BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007402
(605 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|118481211|gb|ABK92556.1| unknown [Populus trichocarpa]
Length = 619
Score = 902 bits (2330), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/575 (77%), Positives = 514/575 (89%), Gaps = 6/575 (1%)
Query: 26 KSFEELGLDLRLVHALNKK--GIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLP 83
+SFEELGLD RL+ ALNKK I +PT IQ+A+IPLIL+GKDVVARAKTGSGKT AYLLP
Sbjct: 38 QSFEELGLDPRLIRALNKKEISIAEPTPIQRAAIPLILQGKDVVARAKTGSGKTLAYLLP 97
Query: 84 LLHRLFNES-SPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMP 142
LL +L + + S + KL+P+A +LVP+ ELCQQVY EV +LI+ CK Q LKVVQLTS+MP
Sbjct: 98 LLQKLLSTADSNRKKLSPSAFILVPSGELCQQVYKEVSSLIDSCKAQ--LKVVQLTSNMP 155
Query: 143 ASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 202
ASDLR ALAGPPDI+++TP C+ K LS GVL+S+S +DSL+ILVLDEADLLLS+GYE+DL
Sbjct: 156 ASDLRNALAGPPDILVSTPSCVAKSLSVGVLKSESINDSLEILVLDEADLLLSFGYEEDL 215
Query: 203 KALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWI 262
KAL+A++PR CQCLLMSATSS+DVDKLKKL+LHNPY+LTLPEV VKDEVIPKNVQQFW+
Sbjct: 216 KALTALVPRRCQCLLMSATSSADVDKLKKLVLHNPYVLTLPEVEGVKDEVIPKNVQQFWV 275
Query: 263 SCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 322
SC +RDKL++IL LLKL+LVQKK LIFTN IDM+FRLKLFLEKFGIKSA+LNAELPQNSR
Sbjct: 276 SCGDRDKLVHILALLKLDLVQKKVLIFTNAIDMSFRLKLFLEKFGIKSAVLNAELPQNSR 335
Query: 323 LHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDF 382
LHILEEFNAGLFDYLIATDD +TKEK++++EG ++RKSKKH K KLDSEFGVVRGIDF
Sbjct: 336 LHILEEFNAGLFDYLIATDDRETKEKEKANEGSLAETRKSKKHAKQKLDSEFGVVRGIDF 395
Query: 383 KNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENED 442
KNVHTVIN++MP +A GYVHRIGRTGRAY+TG+SVSLVSPDEM+I EEIKSF+GDDEN +
Sbjct: 396 KNVHTVINYDMPLSATGYVHRIGRTGRAYSTGSSVSLVSPDEMEILEEIKSFLGDDENNE 455
Query: 443 SNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNP 502
SN+I+P+PLL +NAVESLRYRAED AKSVTKIAVRE+RAQDLRNEILNSEKLKAHFEVNP
Sbjct: 456 SNVISPYPLLTKNAVESLRYRAEDTAKSVTKIAVREARAQDLRNEILNSEKLKAHFEVNP 515
Query: 503 KDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRR 562
+DLDLLKHDK LSKKPPA HL DVPDYLLDA T+EA KMVKLARAAMGN NS RRQGP+R
Sbjct: 516 RDLDLLKHDKVLSKKPPAPHLSDVPDYLLDATTKEASKMVKLARAAMGNNNSGRRQGPKR 575
Query: 563 KFRKS-DPLKSFSAEPTKRAGKGRMKREGRNGDDT 596
FRKS DPLKSFSAE +R KG MKREG++GDDT
Sbjct: 576 NFRKSKDPLKSFSAEGPRRGRKGGMKREGKDGDDT 610
>gi|359496815|ref|XP_002273641.2| PREDICTED: DEAD-box ATP-dependent RNA helicase 16, partial [Vitis
vinifera]
Length = 545
Score = 887 bits (2291), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/536 (82%), Positives = 489/536 (91%), Gaps = 3/536 (0%)
Query: 62 EGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMA 121
EGKDVVARAKTGSGKTFAYLLPLL +LF+ES ++KLAP+A VLVPTRELCQQVYSEV++
Sbjct: 3 EGKDVVARAKTGSGKTFAYLLPLLQKLFSESESRNKLAPSAFVLVPTRELCQQVYSEVLS 62
Query: 122 LIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS 181
LIELC+GQ LKVVQLTSSM SDLR ALAGPPDI+++TPGC+PKCLS GVLQ+ S ++S
Sbjct: 63 LIELCRGQ--LKVVQLTSSMSPSDLRVALAGPPDILVSTPGCIPKCLSAGVLQAASINES 120
Query: 182 LKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILT 241
L+ILVLDEADLLLSYGYEDDLKAL+A +PR CQCLLMSATSS+DV+KLKKLILHNP+ILT
Sbjct: 121 LEILVLDEADLLLSYGYEDDLKALTAHVPRRCQCLLMSATSSADVEKLKKLILHNPFILT 180
Query: 242 LPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKL 301
LPEVGD KDE+IPKNVQQFWISCS RDKLLYIL LLKLELVQKK LIFTN+IDMAFRLKL
Sbjct: 181 LPEVGDGKDEIIPKNVQQFWISCSARDKLLYILALLKLELVQKKILIFTNSIDMAFRLKL 240
Query: 302 FLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRK 361
FLEKFGIKSA+LNAELPQNSRLHILEEFNAGLFDYLIATD +Q KEK+Q+DEG ++ RK
Sbjct: 241 FLEKFGIKSAVLNAELPQNSRLHILEEFNAGLFDYLIATDGSQPKEKEQADEGSQIEPRK 300
Query: 362 SKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS 421
S+KH K KLDSEFGVVRGIDFKNVHTVINFEMPQNA GYVHRIGRTGRAYNTGASVSLVS
Sbjct: 301 SRKHSKQKLDSEFGVVRGIDFKNVHTVINFEMPQNAPGYVHRIGRTGRAYNTGASVSLVS 360
Query: 422 PDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRA 481
PDEM+I EEIKS +GDDEN++SN IAPFPLL +NAVESLRYRAEDV+KSVTK+AVRESRA
Sbjct: 361 PDEMEILEEIKSILGDDENKESNFIAPFPLLTKNAVESLRYRAEDVSKSVTKLAVRESRA 420
Query: 482 QDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKM 541
QDLRNEI+NSEKLKAHFEVN +DLDLLKHDK LSKKP +HLRDVPDYLLD TQEA K+
Sbjct: 421 QDLRNEIVNSEKLKAHFEVNQRDLDLLKHDKVLSKKPIPTHLRDVPDYLLDPTTQEASKI 480
Query: 542 VKLARAAMGNKNSSRRQGPRRKFRKS-DPLKSFSAEPTKRAGKGRMKREGRNGDDT 596
VKLARAAMGN N +RRQG RRKFRKS DPLK+FSAE K+A KG MKR+ ++ DD+
Sbjct: 481 VKLARAAMGNTNPARRQGSRRKFRKSRDPLKTFSAEAPKKASKGGMKRKEKDNDDS 536
>gi|255579537|ref|XP_002530611.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223529859|gb|EEF31791.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 616
Score = 880 bits (2274), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/579 (75%), Positives = 501/579 (86%), Gaps = 5/579 (0%)
Query: 30 ELGLDLRLVHALNKK--GIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
ELGLD RL+ ALNKK I+KPT IQ+ +IPLILEGKDVVARAKTGSGKT AYLLPLL +
Sbjct: 40 ELGLDPRLIRALNKKEISIRKPTPIQRVAIPLILEGKDVVARAKTGSGKTLAYLLPLLQK 99
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
LF++S K KLAP+A +LVP+ ELCQQVY EV ALI+ CK VQLK VQLTS M SDLR
Sbjct: 100 LFSDSGSKKKLAPSAFILVPSGELCQQVYKEVSALIDWCK--VQLKAVQLTSKMSGSDLR 157
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
A+AGPPDI+I++P + KCLS G+LQS S +DSL+ILVLDEADLLLS+GYEDDL+AL+A
Sbjct: 158 TAIAGPPDILISSPASLAKCLSVGLLQSASINDSLEILVLDEADLLLSFGYEDDLRALTA 217
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 267
+IPR CQCLLMSATSS DVDKLKKL+LHNPYILTLPEV KDE IPKNVQQFWISCS R
Sbjct: 218 LIPRRCQCLLMSATSSDDVDKLKKLMLHNPYILTLPEVEGNKDEAIPKNVQQFWISCSGR 277
Query: 268 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 327
DKL++IL LLKL+LVQKK LIFTN+IDM+FRL+LFLEKFGIKSAILNAELPQNSRLHILE
Sbjct: 278 DKLVHILALLKLDLVQKKVLIFTNSIDMSFRLRLFLEKFGIKSAILNAELPQNSRLHILE 337
Query: 328 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 387
EFNAGLFDYLIATDD++TKEK+Q ++ + K K KLDSEFGVVRGIDFKNVHT
Sbjct: 338 EFNAGLFDYLIATDDSETKEKEQEQADRNLAQSRKSKKSKQKLDSEFGVVRGIDFKNVHT 397
Query: 388 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA 447
V+N++MP NAAGYVHRIGRTGR YN+G+SVSLVSPDEM+I E++KSF+GDDEN+DSNIIA
Sbjct: 398 VVNYDMPLNAAGYVHRIGRTGRGYNSGSSVSLVSPDEMEILEDVKSFLGDDENKDSNIIA 457
Query: 448 PFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDL 507
PFPLL +NAVESLRYRAEDVAKSVTKIAV+E+RAQDLRNEILNSEKLKAHFE NP+DLDL
Sbjct: 458 PFPLLTKNAVESLRYRAEDVAKSVTKIAVKEARAQDLRNEILNSEKLKAHFEANPRDLDL 517
Query: 508 LKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKS 567
LKHDK LSK PPA HLRDVPDYL+DA T+EA KMVKLARAAMG N SRRQG ++KF KS
Sbjct: 518 LKHDKVLSKNPPAPHLRDVPDYLMDATTKEASKMVKLARAAMGKNNPSRRQGSKKKFIKS 577
Query: 568 -DPLKSFSAEPTKRAGKGRMKREGRNGDDTGKHKKKKSL 605
DPLK+ S + K++ KG MKRE ++GD T KHKK +++
Sbjct: 578 KDPLKALSFQAPKKSDKGGMKRERKDGDSTHKHKKGRTV 616
>gi|356535071|ref|XP_003536072.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 16-like [Glycine
max]
Length = 601
Score = 848 bits (2191), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/579 (74%), Positives = 485/579 (83%), Gaps = 8/579 (1%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LG+D RL+ AL KK I+KPT IQ+ +IPLILEGKDVVARAKTGSGKT AYLLPLL +LF
Sbjct: 27 LGVDARLLRALIKKRIEKPTPIQRVAIPLILEGKDVVARAKTGSGKTLAYLLPLLQKLFT 86
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
+S + KLAP A VLVPTREL QQVY+EV +L+ELC+ VQLKVVQL S+M A+DLRAAL
Sbjct: 87 ANSDRKKLAPNAFVLVPTRELSQQVYAEVKSLVELCR--VQLKVVQLNSNMLANDLRAAL 144
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 210
AGPPDI+I+TP C+ KCLS GVLQ+ S + SL+ LVLDEADLLLSYGYE+D+KAL+ +P
Sbjct: 145 AGPPDILISTPACVAKCLSCGVLQAASINASLETLVLDEADLLLSYGYENDIKALTPHVP 204
Query: 211 RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKL 270
R CQCLLMSATSS+DVDKLKKLILHNP+ILTLPEVG+ KDEVIPKNVQQFWISC DKL
Sbjct: 205 RSCQCLLMSATSSADVDKLKKLILHNPFILTLPEVGNHKDEVIPKNVQQFWISCPASDKL 264
Query: 271 LYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 330
LYIL +LKL LVQKK LIFTNTIDM+FRLKLFLEKFGI+SA+LN ELPQNSRLHILEEFN
Sbjct: 265 LYILAVLKLGLVQKKVLIFTNTIDMSFRLKLFLEKFGIRSAVLNPELPQNSRLHILEEFN 324
Query: 331 AGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN 390
AGLFDYLIATD +Q+KEKD+ + V SRKS+KH K KLDSEFGVVRGIDFKNV+TVIN
Sbjct: 325 AGLFDYLIATDLSQSKEKDEVPKESIVGSRKSRKHAKIKLDSEFGVVRGIDFKNVYTVIN 384
Query: 391 FEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFP 450
FEMPQ+ AGYVHRIGRTGRAYN+GASVSLVS DEM EEI+SFVGDDEN+ +N IA FP
Sbjct: 385 FEMPQSVAGYVHRIGRTGRAYNSGASVSLVSTDEMDTLEEIRSFVGDDENKGTNSIAEFP 444
Query: 451 LLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKH 510
LL +NAVESLRYRAEDVAKSVT+IAVRESRAQDLRNEILNSEKLK HFE NPKDLDLLKH
Sbjct: 445 LLTKNAVESLRYRAEDVAKSVTRIAVRESRAQDLRNEILNSEKLKTHFETNPKDLDLLKH 504
Query: 511 DKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFRK-SDP 569
DK LSK P HLRDVP+YLLD T+EA +MVKLAR AMGN N RR+G +RK RK DP
Sbjct: 505 DKILSKNAPPPHLRDVPEYLLDKPTKEAREMVKLARDAMGNNN--RRKGSKRKLRKEGDP 562
Query: 570 LKS-FSAEPTKRAGKGRMK--REGRNGDDTGKHKKKKSL 605
LK+ ++ +KR K R + N D KHKK K +
Sbjct: 563 LKAIYATASSKRPHKARKTGGSDSLNSSDRHKHKKNKGI 601
>gi|449451323|ref|XP_004143411.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 16-like [Cucumis
sativus]
gi|449508529|ref|XP_004163338.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 16-like [Cucumis
sativus]
Length = 596
Score = 846 bits (2185), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/573 (75%), Positives = 490/573 (85%), Gaps = 6/573 (1%)
Query: 34 DLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESS 93
D RLV AL KK IQKPT IQ +IPLILEGKDVVARAKTGSGKTFAYLLPLL +LF SS
Sbjct: 29 DPRLVRALIKKEIQKPTPIQHVAIPLILEGKDVVARAKTGSGKTFAYLLPLLQKLFTGSS 88
Query: 94 PKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGP 153
K K P+A+VLVPTREL QQVY E+ +LIE C+ VQ+KV QLTSSM SDLR ALAGP
Sbjct: 89 TKKKSGPSAVVLVPTRELSQQVYKEISSLIETCR--VQVKVAQLTSSMSHSDLRTALAGP 146
Query: 154 PDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGC 213
PDI++ATP C+PKCLS GVLQ S ++SL+ILVLDEADLLLSYGYEDD+KA +A +PR C
Sbjct: 147 PDIIVATPACIPKCLSAGVLQPTSINESLEILVLDEADLLLSYGYEDDIKAFAAHVPRSC 206
Query: 214 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYI 273
QCLLMSATSS DV+KLKKLILHNP+ILTLPEVGDVKD++IPKNVQQF ISC RDKLL+I
Sbjct: 207 QCLLMSATSSEDVEKLKKLILHNPFILTLPEVGDVKDDLIPKNVQQFSISCDARDKLLHI 266
Query: 274 LTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGL 333
L+LLKL+LVQKK LIFTN+IDM FRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGL
Sbjct: 267 LSLLKLDLVQKKVLIFTNSIDMGFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGL 326
Query: 334 FDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEM 393
FDYLIATDD+QTKEK +++E G+VD RKS+K K K+DSEFGVVRGIDFKNV+TVINFE+
Sbjct: 327 FDYLIATDDSQTKEK-EANEEGNVDKRKSRKRAKQKIDSEFGVVRGIDFKNVYTVINFEL 385
Query: 394 PQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLA 453
P +A+GY+HRIGRTGRAYNTGAS+SLVSPDEM FEEI+SF+ D D++II PFPLL
Sbjct: 386 PPSASGYIHRIGRTGRAYNTGASISLVSPDEMDNFEEIQSFLRAD--GDTDIIVPFPLLT 443
Query: 454 QNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKD 513
+NAVESLRYRAEDV+KSVTK+A+RESRA DLRNEILNSEKLKAHFE NPKDLDLLKHDK
Sbjct: 444 KNAVESLRYRAEDVSKSVTKLAIRESRALDLRNEILNSEKLKAHFESNPKDLDLLKHDKI 503
Query: 514 LSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKS-DPLKS 572
LSK PPA HLRDVPDYL+D TQEA K++KLARAAMGN S RR+G +RK R DPLK+
Sbjct: 504 LSKNPPAPHLRDVPDYLVDPVTQEASKIIKLARAAMGNVQSGRRRGFKRKSRNDKDPLKT 563
Query: 573 FSAEPTKRAGKGRMKREGRNGDDTGKHKKKKSL 605
FSAE KR+ +G RE +N D + KKK S+
Sbjct: 564 FSAEGPKRSRRGGGNREDKNDDQNNRRKKKNSV 596
>gi|224094833|ref|XP_002310257.1| predicted protein [Populus trichocarpa]
gi|222853160|gb|EEE90707.1| predicted protein [Populus trichocarpa]
Length = 597
Score = 845 bits (2182), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/575 (74%), Positives = 492/575 (85%), Gaps = 28/575 (4%)
Query: 26 KSFEELGLDLRLVHALNKK--GIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLP 83
+SFEELGLD RL+ ALNKK I +PT IQ+A+IPLIL+GKDVVARAKTGSGKT AYLLP
Sbjct: 38 QSFEELGLDPRLIRALNKKEISIAEPTPIQRAAIPLILQGKDVVARAKTGSGKTLAYLLP 97
Query: 84 LLHRLFNES-SPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMP 142
LL +L + + S + KL+P+A +LVP+ ELCQQVY EV +LI+ CK Q LKVVQLTS+MP
Sbjct: 98 LLQKLLSTADSNRKKLSPSAFILVPSGELCQQVYKEVSSLIDSCKAQ--LKVVQLTSNMP 155
Query: 143 ASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 202
ASDLR ALAGPPDI+++TP C+ K LS GVL+S+S +DSL+ILVLDEADLLLS+GYE+DL
Sbjct: 156 ASDLRNALAGPPDILVSTPSCVAKSLSVGVLKSESINDSLEILVLDEADLLLSFGYEEDL 215
Query: 203 KALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWI 262
KAL+A++PR CQCLLMSATSS+DVDKLKKL+LHNPY+LTLPEV VKDEVIPKNVQQFW+
Sbjct: 216 KALTALVPRRCQCLLMSATSSADVDKLKKLVLHNPYVLTLPEVEGVKDEVIPKNVQQFWV 275
Query: 263 SCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 322
SC +RDKL++IL LLKL+LVQKK LIFTN IDM+FRLKLFLEK
Sbjct: 276 SCGDRDKLVHILALLKLDLVQKKVLIFTNAIDMSFRLKLFLEK----------------- 318
Query: 323 LHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDF 382
EFNAGLFDYLIATDD +TKEK++++EG ++RKSKKH K KLDSEFGVVRGIDF
Sbjct: 319 -----EFNAGLFDYLIATDDRETKEKEKANEGSLAETRKSKKHAKQKLDSEFGVVRGIDF 373
Query: 383 KNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENED 442
KNVHTVIN++MP +A GYVHRIGRTGRAY+TG+SVSLVSPDEM+I EEIKSF+GDDEN +
Sbjct: 374 KNVHTVINYDMPLSATGYVHRIGRTGRAYSTGSSVSLVSPDEMEILEEIKSFLGDDENNE 433
Query: 443 SNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNP 502
SN+I+P+PLL +NAVESLRYRAED AKSVTKIAVRE+RAQDLRNEILNSEKLKAHFEVNP
Sbjct: 434 SNVISPYPLLTKNAVESLRYRAEDTAKSVTKIAVREARAQDLRNEILNSEKLKAHFEVNP 493
Query: 503 KDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRR 562
+DLDLLKHDK LSKKPPA HL DVPDYLLDA T+EA KMVKLARAAMGN NS RRQGP+R
Sbjct: 494 RDLDLLKHDKVLSKKPPAPHLSDVPDYLLDATTKEASKMVKLARAAMGNNNSGRRQGPKR 553
Query: 563 KFRKS-DPLKSFSAEPTKRAGKGRMKREGRNGDDT 596
FRKS DPLKSFSAE +R KG MKREG++GDDT
Sbjct: 554 NFRKSKDPLKSFSAEGPRRGRKGGMKREGKDGDDT 588
>gi|357441703|ref|XP_003591129.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355480177|gb|AES61380.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 604
Score = 833 bits (2152), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/594 (70%), Positives = 480/594 (80%), Gaps = 8/594 (1%)
Query: 16 EEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSG 75
E E E +E++SFEELGLD RLV AL KK I+KPT IQ +IPLILEGKDVVARAKTGSG
Sbjct: 15 EHTEQEIDEDRSFEELGLDARLVRALLKKRIEKPTPIQHVAIPLILEGKDVVARAKTGSG 74
Query: 76 KTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVV 135
KT AYLLPLL +LF + + KLAP VL P+RELCQQ+Y EV +L+ELCK V LK V
Sbjct: 75 KTLAYLLPLLQKLFTANVDRKKLAPNVFVLAPSRELCQQIYVEVKSLLELCK--VPLKAV 132
Query: 136 QLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLS 195
QL S+M A+DL+AAL GPPD++I+TP C+ KCLS VLQ+ S + SL+ LVLDEADLLLS
Sbjct: 133 QLNSNMLATDLQAALVGPPDVLISTPACIAKCLSNSVLQAASINGSLETLVLDEADLLLS 192
Query: 196 YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK 255
YGYE+D+KAL+ IPR CQCLLMSATSS DVDKLKKL+LHNP ILTLPEVG+ KDEVIPK
Sbjct: 193 YGYENDIKALTPHIPRSCQCLLMSATSSDDVDKLKKLMLHNPVILTLPEVGNRKDEVIPK 252
Query: 256 NVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNA 315
NVQQFWI C DKLLYIL +LKLELVQKK LIFTN ID +FRLKLFLEKFGIKSA+LNA
Sbjct: 253 NVQQFWIYCPANDKLLYILAMLKLELVQKKVLIFTNNIDTSFRLKLFLEKFGIKSAVLNA 312
Query: 316 ELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFG 375
ELPQNSRLHILEEFNAGLFDYLIATD +Q+ EKD++ + V S+KS+K+ K KLDSEFG
Sbjct: 313 ELPQNSRLHILEEFNAGLFDYLIATDISQSTEKDEAPKENIVGSKKSRKYTKLKLDSEFG 372
Query: 376 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
VVRGIDFKNV+TVINFEMP++ GYVHRIGRTGRAY++G S+SLVS DEM FEE++SFV
Sbjct: 373 VVRGIDFKNVYTVINFEMPRSVTGYVHRIGRTGRAYSSGTSISLVSTDEMDTFEEVRSFV 432
Query: 436 GDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLK 495
GD+EN SN IA FPLL ++AVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNS KL
Sbjct: 433 GDNENNGSNSIAEFPLLTKSAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSAKLT 492
Query: 496 AHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSS 555
AHF+ NP+DLDLLKHDK LSK P HLRDVPDYL+D T+EA MVKL R AMGN N
Sbjct: 493 AHFQTNPRDLDLLKHDKVLSKTAPPPHLRDVPDYLIDKTTKEARAMVKLTRDAMGNNN-- 550
Query: 556 RRQGPRRKFRK-SDPLKSFSAEPTKRAGKGRMKREGRNGDDTG---KHKKKKSL 605
R+G +RK RK DPL + SA +K+ KG K NG G KHKK K++
Sbjct: 551 HRRGSKRKSRKGGDPLMAISAGVSKKPHKGFKKDGASNGKSNGDRQKHKKTKAI 604
>gi|297798432|ref|XP_002867100.1| hypothetical protein ARALYDRAFT_491167 [Arabidopsis lyrata subsp.
lyrata]
gi|297312936|gb|EFH43359.1| hypothetical protein ARALYDRAFT_491167 [Arabidopsis lyrata subsp.
lyrata]
Length = 634
Score = 774 bits (1999), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/638 (66%), Positives = 501/638 (78%), Gaps = 37/638 (5%)
Query: 1 MGKSKEIPSKEVKQAEEEEAEAEEE----------------------KSFEELGLDLRLV 38
MGK+K P ++V ++ E EE KSFEELGLD RL+
Sbjct: 1 MGKTKYKPVEDVNSQVVDDVEIAEEVEEQRNDGEVEEEEEQKQEEAPKSFEELGLDSRLI 60
Query: 39 HALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN-ESSPKSK 97
AL KKGI+KPTLIQQ++IP ILEGKDVVARAKTGSGKT AYLLPLL +LF+ +S K K
Sbjct: 61 RALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPLLQKLFSADSGSKKK 120
Query: 98 LAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIV 157
LAP+A +LVP+RELC QVYSEV +LIELC+ VQLK VQLTSSM ASD+R ALAG P+I+
Sbjct: 121 LAPSAFILVPSRELCHQVYSEVSSLIELCR--VQLKAVQLTSSMSASDMRNALAGLPEIL 178
Query: 158 IATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLL 217
++TP C+PKC + GVL+ + S+SL ILVLDEADLLLSYGYED+L++++++IPR CQCLL
Sbjct: 179 VSTPACIPKCFAAGVLEPTAVSESLAILVLDEADLLLSYGYEDNLRSVTSIIPRRCQCLL 238
Query: 218 MSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLL 277
MSAT+SSDV+KLKKLILHNP +LTL E D KDE +P NVQQFWISCS +DKLL+IL LL
Sbjct: 239 MSATTSSDVEKLKKLILHNPIVLTLTEEND-KDEAVPSNVQQFWISCSAQDKLLHILALL 297
Query: 278 KLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYL 337
KLE+VQKK LIF NTIDM FRLKLFLEKFGIKSAILN ELPQNSRLHILE+FNAGLFDYL
Sbjct: 298 KLEVVQKKILIFINTIDMGFRLKLFLEKFGIKSAILNGELPQNSRLHILEQFNAGLFDYL 357
Query: 338 IATDD-TQTKEKDQSDEGGHVDSRKSKKH-PKAKLDSEFGVVRGIDFKNVHTVINFEMPQ 395
IATDD +QTK++ + +G K KLD+EFGVVRGIDFK VHTVINF+MPQ
Sbjct: 358 IATDDNSQTKKQKEEAKGEENKENNRNNKRSKPKLDAEFGVVRGIDFKKVHTVINFDMPQ 417
Query: 396 NAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQN 455
+ GY+HRIGRTGRAY++G+SVSLVSPDEM+ FE+IKSF+ D+N+DS+II PFPLL +N
Sbjct: 418 SVTGYIHRIGRTGRAYSSGSSVSLVSPDEMEGFEDIKSFLASDKNKDSDIITPFPLLTEN 477
Query: 456 AVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLS 515
AVESLRYRAEDVAKSVTKIAVRESRAQDLRNEI+NSEKLKAHFE NP+DLDLL+HDK LS
Sbjct: 478 AVESLRYRAEDVAKSVTKIAVRESRAQDLRNEIINSEKLKAHFEANPRDLDLLRHDKPLS 537
Query: 516 KKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKF------RKSDP 569
K PA HL+D+P+YL+D KTQEA KMVKLARAAMGN S G R + SDP
Sbjct: 538 KTAPAPHLKDIPEYLVDPKTQEASKMVKLARAAMGNTRRSGGGGGRNNKNKKRSRKGSDP 597
Query: 570 LKSFSAEPTKRAGKGRM--KREGRNGDDTGKHKKKKSL 605
LK+F+ +KR G + K++GR+ D G KK+K++
Sbjct: 598 LKTFNPNGSKRGHGGGVGQKKDGRDSSD-GSTKKQKTV 634
>gi|15236218|ref|NP_195217.1| DEAD-box ATP-dependent RNA helicase 16 [Arabidopsis thaliana]
gi|75337761|sp|Q9SW44.1|RH16_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 16
gi|5123708|emb|CAB45452.1| RNA helicase (RH16) [Arabidopsis thaliana]
gi|7270442|emb|CAB80208.1| RNA helicase (RH16) [Arabidopsis thaliana]
gi|27754373|gb|AAO22635.1| putative DEAD/DEAH box RNA helicase protein [Arabidopsis thaliana]
gi|28394057|gb|AAO42436.1| putative DEAD/DEAH box RNA helicase protein [Arabidopsis thaliana]
gi|332661036|gb|AEE86436.1| DEAD-box ATP-dependent RNA helicase 16 [Arabidopsis thaliana]
Length = 626
Score = 768 bits (1983), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/589 (69%), Positives = 492/589 (83%), Gaps = 17/589 (2%)
Query: 26 KSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLL 85
KSFEELGLD RL+ AL KKGI+KPTLIQQ++IP ILEGKDVVARAKTGSGKT AYLLPLL
Sbjct: 46 KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPLL 105
Query: 86 HRLFN-ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
+LF+ +S K KLAP+A +LVP+RELCQQVY+EV +LIELC+ VQLK VQLTSSM AS
Sbjct: 106 QKLFSADSVSKKKLAPSAFILVPSRELCQQVYTEVSSLIELCR--VQLKAVQLTSSMSAS 163
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
D+R ALAG P+I+++TP C+PKC + GVL+ + S+SL ILVLDEADLLLSYGYED+L++
Sbjct: 164 DMRNALAGLPEILVSTPACIPKCFAAGVLEPTAVSESLSILVLDEADLLLSYGYEDNLRS 223
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264
++++IPR CQCLLMSAT+SSDV+KLKKLILHNP +LTL E D K+E +P NVQQFWISC
Sbjct: 224 VTSIIPRRCQCLLMSATTSSDVEKLKKLILHNPIVLTLTEDND-KEEAVPSNVQQFWISC 282
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
S +DKLL+IL LLKLE+VQKK LIF NTIDM FRLKLFLEKFGIKSAILN ELPQNSRLH
Sbjct: 283 SAQDKLLHILALLKLEVVQKKILIFINTIDMGFRLKLFLEKFGIKSAILNGELPQNSRLH 342
Query: 325 ILEEFNAGLFDYLIATDD-TQTKEKDQSDEG-GHVDSRKSKKHPKAKLDSEFGVVRGIDF 382
ILE+FNAGLFDYLIATDD +QTK++ + +G + +++K+ K K KLD+EFGVVRGIDF
Sbjct: 343 ILEQFNAGLFDYLIATDDNSQTKKQKEEAKGEANKENKKNNKRSKPKLDAEFGVVRGIDF 402
Query: 383 KNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENED 442
K VHTVINF+MPQ+ GY+HRIGRTGRAY++G+SVSL+SPDEM+ FE+IKSF+ D+N+D
Sbjct: 403 KKVHTVINFDMPQSVTGYIHRIGRTGRAYSSGSSVSLISPDEMEGFEDIKSFLASDKNKD 462
Query: 443 SNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNP 502
+II PFPLL +NAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEI+NSEKLKAHFE NP
Sbjct: 463 IDIITPFPLLTENAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEIINSEKLKAHFEANP 522
Query: 503 KDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRR 562
+DLDLL+HDK LSK PA HL+D+P+YL+DAKTQEA KMVKLARAAMGN S G R
Sbjct: 523 RDLDLLRHDKPLSKTAPAPHLKDIPEYLVDAKTQEASKMVKLARAAMGNTRRSGGGGGRN 582
Query: 563 KF------RKSDPLKSFSAEPTKRAGKGRMKREGRNGDDTGKHKKKKSL 605
+ SDPLK+F+ +KR G+ ++G D+ KK+K++
Sbjct: 583 NKNKKRSRKGSDPLKTFNPNGSKRGAVGQ-----KDGKDSSSTKKQKTV 626
>gi|222625724|gb|EEE59856.1| hypothetical protein OsJ_12436 [Oryza sativa Japonica Group]
Length = 661
Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/585 (61%), Positives = 455/585 (77%), Gaps = 14/585 (2%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF+ELGLD +L AL KKG+ K T IQ+ +IPLILEGKDVVA+AKTGSGKTFAYLLP+LH
Sbjct: 84 SFDELGLDEQLKRALRKKGLDKATPIQREAIPLILEGKDVVAKAKTGSGKTFAYLLPMLH 143
Query: 87 RLFNESSPKS--KLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
L S+ K AP +LVPTRELCQQV++E +L+E C + LKVVQ+ +SM
Sbjct: 144 ELLKLSAEGRIRKSAPNVFILVPTRELCQQVHNEASSLLEFCTSK--LKVVQVNASMSDK 201
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
D++ AL+GPP+I++ TP C+ C+S G+++ S +SL +++LDEADLLLSY EDD+KA
Sbjct: 202 DIKVALSGPPNILVTTPACVASCISKGIIRGSSIKESLSMMILDEADLLLSYRCEDDIKA 261
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264
L IPR CQ +LMSATSS+D++KL KL+LHNP+ILTL EVG KD++IPKNVQQFWISC
Sbjct: 262 LVPHIPRSCQSILMSATSSADIEKLTKLLLHNPFILTLTEVGHAKDDLIPKNVQQFWISC 321
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
+DK+LYIL LLKLEL+QKK LIF N+ID AF+L+LFLEKFGI+S++LNAELPQNSRLH
Sbjct: 322 DAKDKMLYILVLLKLELIQKKVLIFVNSIDSAFKLRLFLEKFGIRSSVLNAELPQNSRLH 381
Query: 325 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 384
I++ FNA LFDYLIATDD ++KE+ Q+++G DSR S+K + LD+EFGVVRGIDFKN
Sbjct: 382 IIQAFNARLFDYLIATDDNKSKEERQANKGNKKDSRVSRKQLQQTLDAEFGVVRGIDFKN 441
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSN 444
V TV+N++MP + AGYVHR+GRTGRA TGAS+SLVSP E IFE+I++ + D EN D++
Sbjct: 442 VFTVVNYDMPPDPAGYVHRVGRTGRANKTGASISLVSPKENGIFEDIENMLKDVENRDTS 501
Query: 445 IIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKD 504
I+PFPLL +NAVESLRYRA+DVA+SVT ++E+R QD++NEILNSEKLKAHF+ NP+D
Sbjct: 502 CISPFPLLTKNAVESLRYRAQDVARSVTTRDIKEARRQDIKNEILNSEKLKAHFDENPRD 561
Query: 505 LDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKF 564
LDLLKHDK LS K +HLRDVP+YL+D T+EA +VKL+RAAM RR+ R F
Sbjct: 562 LDLLKHDKLLSNKEIPAHLRDVPEYLIDPTTKEASNVVKLSRAAMDIDKPRRRK--RMGF 619
Query: 565 -----RKSDPLKSFSAEPTKRAGKGRMKREGRNGDDTGKHKKKKS 604
R SDPLK+FSAE R +GR +R+G D K KK +S
Sbjct: 620 KGGSGRSSDPLKTFSAEGKSRR-RGRKERDGEQ--DRRKRKKVES 661
>gi|115455097|ref|NP_001051149.1| Os03g0728800 [Oryza sativa Japonica Group]
gi|75323066|sp|Q6ATJ8.1|RH16_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 16
gi|50428704|gb|AAT77055.1| putative DEAD/DEAH box helicase [Oryza sativa Japonica Group]
gi|108710879|gb|ABF98674.1| DEAD/DEAH box helicase family protein, expressed [Oryza sativa
Japonica Group]
gi|113549620|dbj|BAF13063.1| Os03g0728800 [Oryza sativa Japonica Group]
gi|215695549|dbj|BAG90740.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 670
Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/585 (61%), Positives = 455/585 (77%), Gaps = 14/585 (2%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF+ELGLD +L AL KKG+ K T IQ+ +IPLILEGKDVVA+AKTGSGKTFAYLLP+LH
Sbjct: 93 SFDELGLDEQLKRALRKKGLDKATPIQREAIPLILEGKDVVAKAKTGSGKTFAYLLPMLH 152
Query: 87 RLFNESSPKS--KLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
L S+ K AP +LVPTRELCQQV++E +L+E C + LKVVQ+ +SM
Sbjct: 153 ELLKLSAEGRIRKSAPNVFILVPTRELCQQVHNEASSLLEFCTSK--LKVVQVNASMSDK 210
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
D++ AL+GPP+I++ TP C+ C+S G+++ S +SL +++LDEADLLLSY EDD+KA
Sbjct: 211 DIKVALSGPPNILVTTPACVASCISKGIIRGSSIKESLSMMILDEADLLLSYRCEDDIKA 270
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264
L IPR CQ +LMSATSS+D++KL KL+LHNP+ILTL EVG KD++IPKNVQQFWISC
Sbjct: 271 LVPHIPRSCQSILMSATSSADIEKLTKLLLHNPFILTLTEVGHAKDDLIPKNVQQFWISC 330
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
+DK+LYIL LLKLEL+QKK LIF N+ID AF+L+LFLEKFGI+S++LNAELPQNSRLH
Sbjct: 331 DAKDKMLYILVLLKLELIQKKVLIFVNSIDSAFKLRLFLEKFGIRSSVLNAELPQNSRLH 390
Query: 325 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 384
I++ FNA LFDYLIATDD ++KE+ Q+++G DSR S+K + LD+EFGVVRGIDFKN
Sbjct: 391 IIQAFNARLFDYLIATDDNKSKEERQANKGNKKDSRVSRKQLQQTLDAEFGVVRGIDFKN 450
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSN 444
V TV+N++MP + AGYVHR+GRTGRA TGAS+SLVSP E IFE+I++ + D EN D++
Sbjct: 451 VFTVVNYDMPPDPAGYVHRVGRTGRANKTGASISLVSPKENGIFEDIENMLKDVENRDTS 510
Query: 445 IIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKD 504
I+PFPLL +NAVESLRYRA+DVA+SVT ++E+R QD++NEILNSEKLKAHF+ NP+D
Sbjct: 511 CISPFPLLTKNAVESLRYRAQDVARSVTTRDIKEARRQDIKNEILNSEKLKAHFDENPRD 570
Query: 505 LDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKF 564
LDLLKHDK LS K +HLRDVP+YL+D T+EA +VKL+RAAM RR+ R F
Sbjct: 571 LDLLKHDKLLSNKEIPAHLRDVPEYLIDPTTKEASNVVKLSRAAMDIDKPRRRK--RMGF 628
Query: 565 -----RKSDPLKSFSAEPTKRAGKGRMKREGRNGDDTGKHKKKKS 604
R SDPLK+FSAE R +GR +R+G D K KK +S
Sbjct: 629 KGGSGRSSDPLKTFSAEGKSRR-RGRKERDGEQ--DRRKRKKVES 670
>gi|218193250|gb|EEC75677.1| hypothetical protein OsI_12480 [Oryza sativa Indica Group]
Length = 661
Score = 696 bits (1797), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/585 (61%), Positives = 456/585 (77%), Gaps = 14/585 (2%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF+ELGLD +L AL KKG+ K T IQ+ +IPLILEGKDVVA+AKTGSGKTFAYLLP+LH
Sbjct: 84 SFDELGLDEQLKRALRKKGLDKATPIQREAIPLILEGKDVVAKAKTGSGKTFAYLLPMLH 143
Query: 87 RLFNESSPKS--KLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
L S+ K AP +LVPTRELCQQV++E +L+E C + LKVVQ+ +SM
Sbjct: 144 ELLKLSAEGRIRKSAPNVFILVPTRELCQQVHNEASSLLEFCTSK--LKVVQVNASMSDK 201
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
D++ AL+GPP+I++ TP C+ C+S G+++ S +SL +++LDEADLLLSY EDD+KA
Sbjct: 202 DIKVALSGPPNILVTTPACVASCISKGIIRGSSIKESLSMMILDEADLLLSYRCEDDIKA 261
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264
L IPR CQ +LMSATSS+D++KL KL+LHNP+ILTL EVG KD++IPKNVQQFWISC
Sbjct: 262 LVPHIPRSCQSILMSATSSADIEKLTKLLLHNPFILTLTEVGHAKDDLIPKNVQQFWISC 321
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
+DK+LYIL LLKLEL+QKK LIF N+ID AF+L+LFLEKFGI+S++LNAELPQNSRLH
Sbjct: 322 DAKDKMLYILVLLKLELIQKKVLIFVNSIDSAFKLRLFLEKFGIRSSVLNAELPQNSRLH 381
Query: 325 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 384
I++ FNA LFDYLIATDD+++KE+ Q+++G DSR S+K + LD+EFGVVRGIDFKN
Sbjct: 382 IIQAFNARLFDYLIATDDSKSKEERQANKGNKKDSRVSRKQLQQTLDAEFGVVRGIDFKN 441
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSN 444
V TV+N++MP + AGY+HR+GRTGRA TGAS+SLVSP E IFE+I++ + D EN D++
Sbjct: 442 VFTVVNYDMPPDPAGYIHRVGRTGRANKTGASISLVSPKENGIFEDIENMLKDVENRDTS 501
Query: 445 IIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKD 504
I+PFPLL +NAVESLRYRA+DVA+SVT ++E+R QD++NEILNSEKLKAHF+ NP+D
Sbjct: 502 CISPFPLLTKNAVESLRYRAQDVARSVTTRDIKEARRQDIKNEILNSEKLKAHFDENPRD 561
Query: 505 LDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKF 564
LDLLKHDK LS K +HLRDVP+YL+D T+EA +VKL+RAAM RR+ R F
Sbjct: 562 LDLLKHDKLLSNKEIPAHLRDVPEYLIDPTTKEASNVVKLSRAAMDIDKPRRRK--RMGF 619
Query: 565 -----RKSDPLKSFSAEPTKRAGKGRMKREGRNGDDTGKHKKKKS 604
R SDPLK+FSAE R +GR +R+G D K KK +S
Sbjct: 620 KGGSGRSSDPLKTFSAEGKSRR-RGRKERDGEQ--DRRKRKKVES 661
>gi|242038265|ref|XP_002466527.1| hypothetical protein SORBIDRAFT_01g009400 [Sorghum bicolor]
gi|241920381|gb|EER93525.1| hypothetical protein SORBIDRAFT_01g009400 [Sorghum bicolor]
Length = 634
Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/572 (62%), Positives = 443/572 (77%), Gaps = 25/572 (4%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF+ELGLD +L AL KKGI K T IQ+ +IPLILEGKDVVA+AKTGSGKTFAYLLPLLH
Sbjct: 38 SFDELGLDEQLKRALRKKGITKATPIQREAIPLILEGKDVVAKAKTGSGKTFAYLLPLLH 97
Query: 87 RLFNESSPKS--KLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
L SS K AP A +LVPTRELCQQVY+E ++L+E C +L+VVQ+T+SM
Sbjct: 98 ELLKLSSEGRIRKPAPNAFILVPTRELCQQVYNEALSLLEFC--TCKLRVVQVTASMSNK 155
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
D+ AL+GPP+I+++TP C+ C+S G+++ S +SL +++LDEADLLLSY EDDLKA
Sbjct: 156 DITVALSGPPNILVSTPACVATCISKGIIRGPSVKESLSMMILDEADLLLSYRCEDDLKA 215
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264
L IPR CQ +LMSATSSSDVDKL KL+LHNP+ILTL VG KD+VIPKNVQQFW+SC
Sbjct: 216 LIPHIPRSCQSILMSATSSSDVDKLTKLLLHNPFILTLSVVGQAKDDVIPKNVQQFWVSC 275
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
+DK+L+IL LLK EL+QKK LIF N+IDMAFRL+LFLEKFGI+SA+LNAELPQNSRLH
Sbjct: 276 DAKDKMLHILALLKFELIQKKVLIFVNSIDMAFRLRLFLEKFGIRSAVLNAELPQNSRLH 335
Query: 325 ILEEFNAGLFDYLIATDDTQTKE------------------KDQSDEGGHVDSRKSKKHP 366
I+E FNA LFDYLIATDDT+TKE + Q+++ + + S+KH
Sbjct: 336 IIEAFNARLFDYLIATDDTKTKEEKQTNKENKKEPKLSHKREKQTNKENQKEPKVSRKHL 395
Query: 367 KAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMK 426
+ LD+EFGVVRGIDFKNV TV+NF+MP +AAGYVHR+GRTGRA TGAS+SLVSP+E
Sbjct: 396 QQTLDAEFGVVRGIDFKNVFTVVNFDMPLDAAGYVHRVGRTGRANKTGASISLVSPEEDS 455
Query: 427 IFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRN 486
F+EI+ + D E +D + I+PFPLL ++AVESLRYRA+DVA++VT ++E+R QD++N
Sbjct: 456 TFKEIEHMLQDVEKKDMDCISPFPLLTKDAVESLRYRAQDVARTVTTRDIQEARRQDIKN 515
Query: 487 EILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLAR 546
EILNSEKLK+HFE NP+DLDLLKHDK LS K +HLRDVPDYL+D KT+EA +VKL+R
Sbjct: 516 EILNSEKLKSHFEENPRDLDLLKHDKLLSNKEIPAHLRDVPDYLIDPKTKEASNVVKLSR 575
Query: 547 AAMGNKNSSR--RQGPRRKFRKS-DPLKSFSA 575
AAMG R RQG + KS DPLK+FSA
Sbjct: 576 AAMGIDKPQRRKRQGFKGGSGKSRDPLKTFSA 607
>gi|326529835|dbj|BAK08197.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 661
Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/557 (64%), Positives = 439/557 (78%), Gaps = 11/557 (1%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
+F+ELGLD +L AL KKG+ K T IQ+ +IPLILEGKDVVA+AKTGSGKTFAYLLPLL
Sbjct: 84 TFDELGLDEQLKRALRKKGLTKTTPIQREAIPLILEGKDVVAKAKTGSGKTFAYLLPLLQ 143
Query: 87 RLFNESSPKS--KLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
L K A AL+LVPTRELCQQVY+E +L+ELC + LK+VQ+T+SM
Sbjct: 144 ELLKLCKEGRIRKSASNALILVPTRELCQQVYNEASSLLELCTSK--LKIVQVTASMSDK 201
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
D++ AL+GPP+I++ TP C+ C+S G++Q S +SL +++LDEADLLLSY EDDLKA
Sbjct: 202 DIKLALSGPPNILVTTPACVAACISKGIVQGSSIKESLSMMILDEADLLLSYRCEDDLKA 261
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264
L IPR CQ +LMSATSS D+DKL KL+LHNP++LTL EVG KD+V+PKNVQQFWISC
Sbjct: 262 LVPHIPRSCQSILMSATSSPDIDKLTKLLLHNPFVLTLTEVGHAKDDVVPKNVQQFWISC 321
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
S +DK+LYIL+LLKLEL+QKK LIF N+ID AFRL+LFLEKF I+SA+LNAELPQNSRLH
Sbjct: 322 SAKDKMLYILSLLKLELIQKKVLIFVNSIDNAFRLRLFLEKFAIRSAVLNAELPQNSRLH 381
Query: 325 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 384
I+E FNA LFDYLIATDD +TK+ Q+++ DS+ S+KH + LD+EFGVVRGIDFKN
Sbjct: 382 IIEAFNARLFDYLIATDDNKTKDAKQTNKESKKDSKASRKHLQQTLDAEFGVVRGIDFKN 441
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSN 444
V TV+NF+MP N AGY+HRIGRTGRA TGAS+SLVSP+E +FEEI+ + D E +D+N
Sbjct: 442 VFTVVNFDMPPNPAGYIHRIGRTGRANKTGASISLVSPEEENVFEEIEHMLQDVEKKDTN 501
Query: 445 IIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKD 504
I PFPLL +NAVESLRYRA+DVA+SVT ++E+R QD++NEILNSEKLKAHFE NP D
Sbjct: 502 CILPFPLLTKNAVESLRYRAQDVARSVTSRDIQEARRQDVKNEILNSEKLKAHFEENPTD 561
Query: 505 LDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKF 564
LDLLKHDK L+ K +HLRDVP+YL+D T+EA VKL+RAAMG N R++ R F
Sbjct: 562 LDLLKHDKLLTNKSIPAHLRDVPEYLIDPTTKEASNAVKLSRAAMGLDNPGRKK--RMGF 619
Query: 565 R-----KSDPLKSFSAE 576
R SDPL++FSAE
Sbjct: 620 RSGSGKSSDPLRTFSAE 636
>gi|357115389|ref|XP_003559471.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 16-like
[Brachypodium distachyon]
Length = 653
Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/587 (62%), Positives = 453/587 (77%), Gaps = 19/587 (3%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
+F+ELGLD +L AL KKG+ T IQ+ +IPLILEGKDVVA+AKTGSGKTFAYLLPLL
Sbjct: 75 TFDELGLDEQLKRALRKKGMTTTTPIQREAIPLILEGKDVVAKAKTGSGKTFAYLLPLLQ 134
Query: 87 RLFNESSPKS--KLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
L SS K AP AL+LVPTRELCQQV++E +L+ELC +V K+VQ+T+SM
Sbjct: 135 ELLKLSSEGRIRKSAPNALILVPTRELCQQVFNEASSLLELCTSKV--KIVQVTASMSDK 192
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
D++ AL+GPP+I++ TP C+ C+S G++Q S +SL +++LDEADLLLSY EDDLKA
Sbjct: 193 DIKLALSGPPNILVTTPACVATCISKGIVQGSSIKESLSMMILDEADLLLSYRCEDDLKA 252
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264
L IPR CQ +LMSATSS D+DKL KL+LHNP+ILTL EVG KD+VIP+NVQQF ISC
Sbjct: 253 LVPHIPRSCQSILMSATSSPDIDKLTKLLLHNPFILTLTEVGHAKDDVIPRNVQQFSISC 312
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
S +DK+LYIL LLKL+L+QKK LIF N+IDMAFRL+LFLEKFGI+SA+LNAELPQNSRLH
Sbjct: 313 SAKDKMLYILALLKLDLIQKKVLIFVNSIDMAFRLRLFLEKFGIRSAVLNAELPQNSRLH 372
Query: 325 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 384
I+E FNA LFDYLIATDD + KE ++++ DSR+S+KH + LD+EFGVVRG+DFKN
Sbjct: 373 IIEAFNARLFDYLIATDDNKPKEVKETNKENKKDSRQSRKHSQQTLDAEFGVVRGVDFKN 432
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSN 444
V TV+NF+MP N AGY+HRIGRTGRA +GAS+SLVSP+E IFEEI+ V D +D +
Sbjct: 433 VFTVVNFDMPPNPAGYIHRIGRTGRANKSGASISLVSPEENNIFEEIEQMVQDIAKKDIS 492
Query: 445 IIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKD 504
I+ FPLL +NAVESLRYRA+DVA+SVT ++E+R QD++NEILNSEKLKAHF NP D
Sbjct: 493 CISSFPLLTKNAVESLRYRAQDVARSVTSRDIQEARRQDIKNEILNSEKLKAHFVENPTD 552
Query: 505 LDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKF 564
LDLLKHDK LS K +HLRDVP+YL+D T+EA VKL+RAAMG N RR+ R F
Sbjct: 553 LDLLKHDKLLSNKTIPAHLRDVPEYLIDPTTKEASNAVKLSRAAMGLDNPGRRK--RMGF 610
Query: 565 -----RKSDPLKSFSAEPTKRAGKGRMKREG--RNGDDTGKHKKKKS 604
+ DPL++FSAE GK R KR G R+G+ + ++KK+
Sbjct: 611 KGGSGKSRDPLRTFSAE-----GKSR-KRGGKERDGEQDRRKRRKKA 651
>gi|242081725|ref|XP_002445631.1| hypothetical protein SORBIDRAFT_07g022960 [Sorghum bicolor]
gi|241941981|gb|EES15126.1| hypothetical protein SORBIDRAFT_07g022960 [Sorghum bicolor]
Length = 632
Score = 665 bits (1715), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/568 (63%), Positives = 441/568 (77%), Gaps = 21/568 (3%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF+ELGLD +L AL KKGI K T IQ+ +IPLILEGKDVVA+AKTGSGKTFAYLLPLLH
Sbjct: 41 SFDELGLDEQLKRALRKKGIAKATPIQREAIPLILEGKDVVAKAKTGSGKTFAYLLPLLH 100
Query: 87 RLFNESSPKS--KLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
L SS K AP A +LVPTRELCQQVY+E ++L+E C +L+VVQ+T+SM
Sbjct: 101 ELLKLSSEGRIRKPAPNAFILVPTRELCQQVYNEALSLLEFC--TCKLRVVQVTASMSDK 158
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
D+ AL+GPP+I+++TP C+ C+S G+++ S +SL +++ DEADLLLSY EDDLKA
Sbjct: 159 DITVALSGPPNILVSTPACVATCISKGIIRGPSVKESLSMMIFDEADLLLSYRCEDDLKA 218
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264
L IPR CQ +LMSATSSSDVDKL KL+LHNP+ILTL EVG KD++IPKNVQQFWISC
Sbjct: 219 LIPHIPRSCQSILMSATSSSDVDKLTKLLLHNPFILTLSEVGGTKDDMIPKNVQQFWISC 278
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
+DK+L++L LLK EL+QKK LIF N+IDMAFRL+LFLEKFGI SA+LNAELPQNSRLH
Sbjct: 279 DAKDKMLHMLALLKFELIQKKVLIFVNSIDMAFRLRLFLEKFGIGSAVLNAELPQNSRLH 338
Query: 325 ILEEFNAGLFDYLIATDDTQT--------------KEKDQSDEGGHVDSRKSKKHPKAKL 370
I+E FNA LFDYLIATDDT+T K + Q+++ +S+ S+KH + L
Sbjct: 339 IIEAFNARLFDYLIATDDTKTKEEKENKKEPKLSRKREKQTNKENEKESKVSRKHLQQTL 398
Query: 371 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE 430
D+EFGVVRGIDFKNV TV+NF+MP +AAGYVHR+GRTGRA TGAS+SLVS +E F+E
Sbjct: 399 DAEFGVVRGIDFKNVFTVVNFDMPLDAAGYVHRVGRTGRANKTGASISLVSQEEDSTFKE 458
Query: 431 IKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILN 490
I+ + D E +D + I+PFPLL ++AVESLRYRA+DVA+SVT ++E+R QD++NEILN
Sbjct: 459 IEHMLQDVEKKDMDCISPFPLLTKDAVESLRYRAQDVARSVTTRDIQEARRQDIKNEILN 518
Query: 491 SEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMG 550
SEKLK+HFE NP+DLDLLKHDK LS K +HLRDVPDYL+D KT+EA +VKL+RAAMG
Sbjct: 519 SEKLKSHFEENPRDLDLLKHDKLLSNKEIPAHLRDVPDYLIDPKTKEASNVVKLSRAAMG 578
Query: 551 NKNSSR--RQGPRRKFRKS-DPLKSFSA 575
R RQG + KS DPLK+FSA
Sbjct: 579 IDKPQRRKRQGFKGGSGKSRDPLKTFSA 606
>gi|226507661|ref|NP_001141827.1| uncharacterized protein LOC100273968 [Zea mays]
gi|194706072|gb|ACF87120.1| unknown [Zea mays]
gi|413933175|gb|AFW67726.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
Length = 634
Score = 655 bits (1691), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/571 (62%), Positives = 436/571 (76%), Gaps = 24/571 (4%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF+ELGLD +L AL KKGI K T IQ+ +IPLILEGKDVVA+AKTGSGKTFAYLLPLLH
Sbjct: 42 SFDELGLDEQLKRALRKKGILKATPIQREAIPLILEGKDVVAKAKTGSGKTFAYLLPLLH 101
Query: 87 RLFNESSPKS--KLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
L SS K AP A +LVPTR+LC QVY+E ++L+ELC +L+VVQ+T+SM
Sbjct: 102 ELLKLSSEGRIRKPAPNAFILVPTRDLCHQVYNEALSLLELC--TCKLRVVQVTASMSDK 159
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
D+ AL+GPP+I+++TP C+ C+S G+++ + +SL +++LDEADLLLSY E DLKA
Sbjct: 160 DITVALSGPPNILVSTPACVATCISKGIIRGPAVKESLSMMILDEADLLLSYRCEVDLKA 219
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264
L IPR CQ +LMSATSSSDVDKL KL+LHNP++LTL EVG KD+VIPKNVQQFWISC
Sbjct: 220 LIPHIPRSCQSILMSATSSSDVDKLTKLLLHNPFVLTLSEVGQAKDDVIPKNVQQFWISC 279
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
+DK+L+IL LLK EL+QKK LIF N+IDMAFRL+L LEKFGI+SA+LNAELPQNSRLH
Sbjct: 280 DAKDKILHILALLKFELIQKKVLIFVNSIDMAFRLRLILEKFGIRSAVLNAELPQNSRLH 339
Query: 325 ILEEFNAGLFDYLIATDDTQTKEKD-----------------QSDEGGHVDSRKSKKHPK 367
I+E FNA LFDYLIATDDT+TKEK Q+++ + + S+KH +
Sbjct: 340 IIEAFNARLFDYLIATDDTKTKEKQTNEENKKEATLSRKRKKQTNKENQKEQKVSRKHLQ 399
Query: 368 AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 427
LD+EFGVVRGIDFKNV TV+NF+MP +A GYVHRIGRTGRA TGAS+SLVSP E
Sbjct: 400 QTLDAEFGVVRGIDFKNVFTVVNFDMPLDATGYVHRIGRTGRANKTGASISLVSPKEDST 459
Query: 428 FEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNE 487
F+EI+ + D E +D + I+PFPLL ++AVESLRYRA+DVA+SVT V+E+R QD++NE
Sbjct: 460 FKEIEHMLQDVEKKDMDCISPFPLLTKDAVESLRYRAQDVARSVTTRDVQEARRQDIKNE 519
Query: 488 ILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARA 547
ILNSEKLK+HFE NP DLDLLKHDK L K ++LRDVPDYL+D KT+EA VKL+RA
Sbjct: 520 ILNSEKLKSHFEENPTDLDLLKHDKLLCNKEIPAYLRDVPDYLIDPKTKEASNAVKLSRA 579
Query: 548 AMGNKNSSR--RQGPRRKFRKS-DPLKSFSA 575
AM R RQG + KS DPLK+FSA
Sbjct: 580 AMHIDKPQRRKRQGFKGGSGKSRDPLKTFSA 610
>gi|168019520|ref|XP_001762292.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686370|gb|EDQ72759.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 558
Score = 621 bits (1602), Expect = e-175, Method: Compositional matrix adjust.
Identities = 317/549 (57%), Positives = 406/549 (73%), Gaps = 26/549 (4%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
+GLD RL+ AL+KKG+ PT +Q ++PLILEGKDVVARAKTGSGKT +YLLPL+H+L
Sbjct: 1 MGLDARLLRALSKKGLSYPTPVQAKAMPLILEGKDVVARAKTGSGKTLSYLLPLVHKLLA 60
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
E SK P A+VLVPTRELCQQVY E +L E C L+VVQL ++M + ++ +L
Sbjct: 61 EGG--SKKGPRAMVLVPTRELCQQVYDEATSLAEYCGAT--LRVVQLATTMSTATMKMSL 116
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 210
A PDI++ATP + C+S V+Q +SL +LVLDEADLL SYGYE+DL++L+ +P
Sbjct: 117 ARVPDILVATPARIAACISQNVIQPAVLEESLAMLVLDEADLLFSYGYEEDLRSLAVYVP 176
Query: 211 RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEV--GDVKDEVIPKNVQQFWISCSERD 268
R CQCLLMSAT+S DVDKLKKL+LHNP LTL E G V+PK+VQQF + C +D
Sbjct: 177 RKCQCLLMSATASPDVDKLKKLVLHNPVTLTLTEEVDGSGDTSVVPKSVQQFSVHCKSKD 236
Query: 269 KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 328
KLLY+L++LK +L+QKKA+IF NTID FRLKLFLE+FGIKSA+LN ELPQNSRLHIL++
Sbjct: 237 KLLYMLSILKYDLIQKKAIIFVNTIDTGFRLKLFLEQFGIKSAVLNGELPQNSRLHILQQ 296
Query: 329 FNAGLFDYLIATDDTQTKE----------KDQSDEGGHVDSRKSKKHPKAKLDSEFGVVR 378
FN GLF++LIATDD ++ + + E V+S+ SK KA D+EFGVVR
Sbjct: 297 FNVGLFEHLIATDDGKSLQPVSSTSKESSSTKDSEAEPVESKSSK---KAVRDTEFGVVR 353
Query: 379 GIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK-SFVGD 437
GIDFKNV TV+N++MP+ AGY+HRIGRTGRA N G S+SLV P++ +I ++IK G
Sbjct: 354 GIDFKNVRTVVNYDMPETVAGYIHRIGRTGRAGNAGISLSLVPPEDEEILKQIKVELSGV 413
Query: 438 DENEDSN--IIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLK 495
DE + +N +I+PFPLL++ AVESLRYRAEDV +SVTKIAVRE+RA++LR EILNSE+LK
Sbjct: 414 DEGQQNNKALISPFPLLSKTAVESLRYRAEDVMRSVTKIAVREARAKELRIEILNSERLK 473
Query: 496 AHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSS 555
AHFE NP DL+LLKHDK LSK PA+HL+ VP+YL D T+ A + A + +K+ +
Sbjct: 474 AHFEDNPTDLELLKHDKVLSKVAPAAHLKTVPEYLRDPTTEAASR----AHNQIRDKSPT 529
Query: 556 RRQGPRRKF 564
+ P RK
Sbjct: 530 KASSPHRKL 538
>gi|302772787|ref|XP_002969811.1| hypothetical protein SELMODRAFT_440996 [Selaginella moellendorffii]
gi|300162322|gb|EFJ28935.1| hypothetical protein SELMODRAFT_440996 [Selaginella moellendorffii]
Length = 591
Score = 617 bits (1592), Expect = e-174, Method: Compositional matrix adjust.
Identities = 326/590 (55%), Positives = 425/590 (72%), Gaps = 13/590 (2%)
Query: 19 EAEAEEEK-SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKT 77
+ E EEE FEELGLD RL+ A+ K+G+ KPTLIQQ +IP ILEGKDVV RAKTGSGKT
Sbjct: 5 DGEDEEEALGFEELGLDPRLLRAIAKRGLPKPTLIQQTAIPRILEGKDVVGRAKTGSGKT 64
Query: 78 FAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQL 137
FAYLLP++H+L + + L ALVLVPTRELCQQV+ E+ +L+ G L VQL
Sbjct: 65 FAYLLPMIHKLLAHTENATGLK--ALVLVPTRELCQQVFDELESLLNFSGGV--LTAVQL 120
Query: 138 TSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYG 197
T+SM ++ ++ A+ P+IV++TPGC+ C++ G + + S +SL LVLDEADLLLSYG
Sbjct: 121 TTSMSSAVVKGAVTRRPNIVVSTPGCVASCIADGTISAPSLKESLATLVLDEADLLLSYG 180
Query: 198 YEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEV-GDVKDEVIPKN 256
YE+DL+ L +P CQC+LMSAT+S+DVDKLKKL+LH+P LTL EV G KD+V+P
Sbjct: 181 YEEDLQKLVLHVPPRCQCILMSATTSADVDKLKKLVLHDPVTLTLTEVDGSTKDDVVPST 240
Query: 257 VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAE 316
VQQF + C DKLL++LTL++ EL+QKKALIF N ID +F++KLFLE+FGIKSA+LNAE
Sbjct: 241 VQQFMVRCEAEDKLLHLLTLVRFELIQKKALIFVNAIDTSFKIKLFLEQFGIKSAVLNAE 300
Query: 317 LPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGV 376
LPQNSRLHIL+EFN GLFDY+IATDD ++ + + D+ G + K + +D+EFGV
Sbjct: 301 LPQNSRLHILKEFNLGLFDYMIATDDGKSDKLETEDQAGGKLKNRKKLKKRI-MDAEFGV 359
Query: 377 VRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV- 435
VRG+DFKNV+TV+NF++P+ GY+HRIGRTGRA N G +VS V + + ++ +
Sbjct: 360 VRGVDFKNVYTVVNFDLPRTVTGYIHRIGRTGRAGNAGVAVSFVCEGDEGLLSSLEDVLS 419
Query: 436 GDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLK 495
GD N I PFP + AVESLRYRAEDVA+ VTKI++RE+RA++L+ EILNSE+LK
Sbjct: 420 GDSGNAGEKRILPFPTITSGAVESLRYRAEDVARGVTKISIREARAKELKMEILNSERLK 479
Query: 496 AHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSS 555
AHFE NP DL LLKHDK LSK+ P HLR VP+YL DA+ A K +K A AA+G + S
Sbjct: 480 AHFEDNPADLKLLKHDKPLSKRQPPQHLRSVPEYLRDAEVMAAGKAMKAANAAIGRPSVS 539
Query: 556 RRQGPRRKFRKSDPLKSFSAEPTKRAGK-GRMKREGRNGDDTGKHKKKKS 604
+ R++ + DPLKS + KR GK GR + GR+ + H K+S
Sbjct: 540 YTK-KRKQNWEQDPLKSI-GKKHKRGGKPGRTQHPGRSHKNA--HSSKRS 585
>gi|302806830|ref|XP_002985146.1| hypothetical protein SELMODRAFT_424270 [Selaginella moellendorffii]
gi|300146974|gb|EFJ13640.1| hypothetical protein SELMODRAFT_424270 [Selaginella moellendorffii]
Length = 578
Score = 609 bits (1570), Expect = e-171, Method: Compositional matrix adjust.
Identities = 313/555 (56%), Positives = 406/555 (73%), Gaps = 8/555 (1%)
Query: 23 EEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLL 82
EE FEELGLD RL+ A+ K+G+ KPTLIQQ +IP ILEGKDVV RAKTGSGKTFAYLL
Sbjct: 10 EEALGFEELGLDPRLLRAIAKRGLPKPTLIQQTAIPRILEGKDVVGRAKTGSGKTFAYLL 69
Query: 83 PLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMP 142
P++H+L + + L ALVLVPTRELCQQV+ E+ +L+ G L VQLT+SM
Sbjct: 70 PMIHKLLAHTENATGLK--ALVLVPTRELCQQVFDELESLLNFSGGV--LTAVQLTTSMS 125
Query: 143 ASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 202
++ ++ A+ P+IV++TPGC+ C++ G + + S +SL LVLDEADLLLSYGYE+DL
Sbjct: 126 SAVVKGAVTRRPNIVVSTPGCVASCIADGTISAPSLKESLATLVLDEADLLLSYGYEEDL 185
Query: 203 KALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEV-GDVKDEVIPKNVQQFW 261
+ L +P CQC+LMSAT+S+DVDKLKKL+LH+P LTL EV G KD+V+P VQQF
Sbjct: 186 QKLVLHVPPRCQCILMSATTSADVDKLKKLVLHDPVTLTLTEVDGSTKDDVVPSTVQQFM 245
Query: 262 ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 321
+ C DKLL++LTL++ EL+QKKALIF N ID +F++KLFLE+FGIKSA+LNAELPQNS
Sbjct: 246 VRCEAEDKLLHLLTLVRFELIQKKALIFVNAIDTSFKIKLFLEQFGIKSAVLNAELPQNS 305
Query: 322 RLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGID 381
RLHIL+EFN GLFDY+IATDD ++ + + D+ G + K + +D+EFGVVRG+D
Sbjct: 306 RLHILKEFNLGLFDYMIATDDGKSDKLETEDQAGGKLKNRKKLKKRI-MDAEFGVVRGVD 364
Query: 382 FKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV-GDDEN 440
FKNV+TV+NF++P+ GY+HRIGRTGRA N G +VS V + + ++ + GD N
Sbjct: 365 FKNVYTVVNFDLPRTVTGYIHRIGRTGRAGNAGVAVSFVCEGDEGLLSSLEDVLSGDSGN 424
Query: 441 EDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEV 500
I PFP + AVESLRYRAEDVA+ VTKI++RE+RA++L+ EILNSE+LKAHFE
Sbjct: 425 AGEKRILPFPTITSGAVESLRYRAEDVARGVTKISIREARAKELKMEILNSERLKAHFED 484
Query: 501 NPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGP 560
NP DL LLKHDK LSK+ P HLR VP+YL DA+ A K +K A AA+G + S +
Sbjct: 485 NPADLKLLKHDKPLSKRQPPQHLRSVPEYLRDAEVMAAGKAMKAANAAIGRPSVSYTK-K 543
Query: 561 RRKFRKSDPLKSFSA 575
R++ + DPLKS
Sbjct: 544 RKQNWEQDPLKSIGV 558
>gi|356576789|ref|XP_003556512.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase
16-like [Glycine max]
Length = 365
Score = 578 bits (1491), Expect = e-162, Method: Compositional matrix adjust.
Identities = 283/358 (79%), Positives = 315/358 (87%)
Query: 189 EADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDV 248
+ADLLLSYGYE+ +KA + +PR CQCLLMSATSS+DVDKLKKLILH+P+ILTLPEVG+
Sbjct: 3 QADLLLSYGYENHIKAFTPHVPRSCQCLLMSATSSADVDKLKKLILHSPFILTLPEVGNH 62
Query: 249 KDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGI 308
KDEVIP NVQQFWISC DKLL IL +LKL LVQKK LIFTNTIDM+FRLKLF EKFGI
Sbjct: 63 KDEVIPXNVQQFWISCPASDKLLNILAVLKLGLVQKKVLIFTNTIDMSFRLKLFXEKFGI 122
Query: 309 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA 368
+SA+LN ELPQNSRLHILEEFNAGLFDYLIATD +Q+KEKD+ + +V S KS++H K
Sbjct: 123 RSAVLNPELPQNSRLHILEEFNAGLFDYLIATDLSQSKEKDEVPKESNVGSWKSRQHAKI 182
Query: 369 KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF 428
KLDSEFGVVRGIDFKNV+TVINFEMP++ AGYVHRIGRTGRAYN+GASVSLVS DEM
Sbjct: 183 KLDSEFGVVRGIDFKNVYTVINFEMPESVAGYVHRIGRTGRAYNSGASVSLVSTDEMDTL 242
Query: 429 EEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEI 488
EEI+SFV DDEN+ +N IA FPLL +NAVESLRYRAEDVAKSVT+IAVRESRAQDLRNEI
Sbjct: 243 EEIRSFVRDDENKGTNSIAEFPLLTKNAVESLRYRAEDVAKSVTRIAVRESRAQDLRNEI 302
Query: 489 LNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLAR 546
LNSEKLKAHFE NPKDLDLLKHDK LSK PP HLRDVP+YLLD T+EA +MVKLAR
Sbjct: 303 LNSEKLKAHFETNPKDLDLLKHDKVLSKNPPPPHLRDVPEYLLDKPTKEAREMVKLAR 360
>gi|116787621|gb|ABK24578.1| unknown [Picea sitchensis]
Length = 465
Score = 537 bits (1383), Expect = e-150, Method: Compositional matrix adjust.
Identities = 284/433 (65%), Positives = 342/433 (78%), Gaps = 6/433 (1%)
Query: 150 LAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVI 209
+ GPPDIV+ATP C+ C+S +LQS S +SL LVLDEADLLLSYGYE DLK+L I
Sbjct: 1 MVGPPDIVVATPACIATCISKNILQSSSLEESLSTLVLDEADLLLSYGYEQDLKSLVHHI 60
Query: 210 PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEV-GDVKDEVIPKNVQQFWISCSERD 268
PR CQC+LMSATSS+DV+K+KKL+LH+P ILTL EV G+ + V+P +VQQFWISC D
Sbjct: 61 PRRCQCILMSATSSADVEKIKKLVLHSPVILTLTEVEGNEYNGVVPNSVQQFWISCDVHD 120
Query: 269 KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 328
KLLYIL LLKLELVQKKALIF N+ID FRLKLFLE+FGIKSA+LN+ELPQNSRLH+LEE
Sbjct: 121 KLLYILALLKLELVQKKALIFVNSIDTGFRLKLFLEQFGIKSAVLNSELPQNSRLHMLEE 180
Query: 329 FNAGLFDYLIATDDTQ-TKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 387
FNAG FDYLIA DD++ K +++ E + + S+K K DSEFGVVRGIDFKNV T
Sbjct: 181 FNAGSFDYLIAIDDSKPEKVENEPIEKRMANHKGSRKRHKRSFDSEFGVVRGIDFKNVRT 240
Query: 388 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK-SFVGDDE--NEDSN 444
VINF+MP N +GY+HRIGRTGRAY+TGASVSLVSP E +F EIK + G E E +
Sbjct: 241 VINFDMPLNPSGYIHRIGRTGRAYSTGASVSLVSPSEDDVFREIKVALSGGKELDTESTK 300
Query: 445 IIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKD 504
I+PFPLL +NAVESLRYRA+D+A+S+TK+AV+E+RA +LRNEILNSE+LKAHFE NPKD
Sbjct: 301 FISPFPLLTKNAVESLRYRAQDIAQSITKVAVKEARANELRNEILNSERLKAHFEDNPKD 360
Query: 505 LDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKF 564
L+LLKHDK LSKK P+SHL +PDYL+D T+ A K +KLAR AMG +S R ++K
Sbjct: 361 LELLKHDKVLSKKRPSSHLCAIPDYLVDPTTEVASKAIKLAREAMGQSHSGHRSWFKKKT 420
Query: 565 -RKSDPLKSFSAE 576
R DPLK+FS E
Sbjct: 421 GRTGDPLKTFSLE 433
>gi|147797635|emb|CAN71941.1| hypothetical protein VITISV_038912 [Vitis vinifera]
Length = 377
Score = 502 bits (1292), Expect = e-139, Method: Compositional matrix adjust.
Identities = 277/440 (62%), Positives = 311/440 (70%), Gaps = 98/440 (22%)
Query: 26 KSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLL 85
K+FEELGL+ L+ AL KKGI+KPT IQ+ +IPLILEGKDVVARAKTGSGKTFAYLLPLL
Sbjct: 24 KTFEELGLEPSLIRALIKKGIEKPTPIQEVAIPLILEGKDVVARAKTGSGKTFAYLLPLL 83
Query: 86 HRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASD 145
+LF+ES ++KLAP+A VLV T ++PA
Sbjct: 84 QKLFSESESRNKLAPSAFVLVAN-----------------------------TRTLPA-- 112
Query: 146 LRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL 205
GVLQ+ S ++SL+ILVLDEADLLLSYGYEDDLKAL
Sbjct: 113 -------------------------GVLQAASINESLEILVLDEADLLLSYGYEDDLKAL 147
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
+A +PR CQCLLMSATSS+
Sbjct: 148 TAHVPRRCQCLLMSATSSA----------------------------------------- 166
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
RDKLLYIL LLKLELVQKK LIFTN+IDMAFRLKLFLEKFGIKSA+LNAELPQNSRLHI
Sbjct: 167 -RDKLLYILALLKLELVQKKILIFTNSIDMAFRLKLFLEKFGIKSAVLNAELPQNSRLHI 225
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
LEEFNAGLFDYLIATD +Q KEK+Q+DEG ++ RKS+KH K KLDSEFGVVRGIDFKNV
Sbjct: 226 LEEFNAGLFDYLIATDGSQPKEKEQADEGSQIEPRKSRKHSKQKLDSEFGVVRGIDFKNV 285
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNI 445
HTVINFEMPQNA GYVHRIGRTGRAYN+GASVSLVSPDEM+I EEIKS +GDDEN++SN
Sbjct: 286 HTVINFEMPQNAPGYVHRIGRTGRAYNSGASVSLVSPDEMEILEEIKSILGDDENKESNF 345
Query: 446 IAPFPLLAQNAVESLRYRAE 465
IAPFPLL +NAVESLRYRAE
Sbjct: 346 IAPFPLLTKNAVESLRYRAE 365
>gi|297741871|emb|CBI33259.3| unnamed protein product [Vitis vinifera]
Length = 8206
Score = 490 bits (1261), Expect = e-135, Method: Compositional matrix adjust.
Identities = 238/292 (81%), Positives = 263/292 (90%), Gaps = 1/292 (0%)
Query: 306 FGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKH 365
FGIKSA+LNAELPQNSRLHILEEFNAGLFDYLIATD +Q KEK+Q+DEG ++ RKS+KH
Sbjct: 7906 FGIKSAVLNAELPQNSRLHILEEFNAGLFDYLIATDGSQPKEKEQADEGSQIEPRKSRKH 7965
Query: 366 PKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM 425
K KLDSEFGVVRGIDFKNVHTVINFEMPQNA GYVHRIGRTGRAYNTGASVSLVSPDEM
Sbjct: 7966 SKQKLDSEFGVVRGIDFKNVHTVINFEMPQNAPGYVHRIGRTGRAYNTGASVSLVSPDEM 8025
Query: 426 KIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLR 485
+I EEIKS +GDDEN++SN IAPFPLL +NAVESLRYRAEDV+KSVTK+AVRESRAQDLR
Sbjct: 8026 EILEEIKSILGDDENKESNFIAPFPLLTKNAVESLRYRAEDVSKSVTKLAVRESRAQDLR 8085
Query: 486 NEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLA 545
NEI+NSEKLKAHFEVN +DLDLLKHDK LSKKP +HLRDVPDYLLD TQEA K+VKLA
Sbjct: 8086 NEIVNSEKLKAHFEVNQRDLDLLKHDKVLSKKPIPTHLRDVPDYLLDPTTQEASKIVKLA 8145
Query: 546 RAAMGNKNSSRRQGPRRKFRKS-DPLKSFSAEPTKRAGKGRMKREGRNGDDT 596
RAAMGN N +RRQG RRKFRKS DPLK+FSAE K+A KG MKR+ ++ DD+
Sbjct: 8146 RAAMGNTNPARRQGSRRKFRKSRDPLKTFSAEAPKKASKGGMKRKEKDNDDS 8197
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 188/229 (82%), Positives = 211/229 (92%), Gaps = 2/229 (0%)
Query: 77 TFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQ 136
TFAYLLPLL +LF+ES ++KLAP+A VLVPTRELCQQVYSEV++LIELC+GQ LKVVQ
Sbjct: 1 TFAYLLPLLQKLFSESESRNKLAPSAFVLVPTRELCQQVYSEVLSLIELCRGQ--LKVVQ 58
Query: 137 LTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSY 196
LTSSM SDLR ALAGPPDI+++TPGC+PKCLS GVLQ+ S ++SL+ILVLDEADLLLSY
Sbjct: 59 LTSSMSPSDLRVALAGPPDILVSTPGCIPKCLSAGVLQAASINESLEILVLDEADLLLSY 118
Query: 197 GYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN 256
GYEDDLKAL+A +PR CQCLLMSATSS+DV+KLKKLILHNP+ILTLPEVGD KDE+IPKN
Sbjct: 119 GYEDDLKALTAHVPRRCQCLLMSATSSADVEKLKKLILHNPFILTLPEVGDGKDEIIPKN 178
Query: 257 VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEK 305
VQQFWISCS RDKLLYIL LLKLELVQKK LIFTN+IDMAFRLKLFLEK
Sbjct: 179 VQQFWISCSARDKLLYILALLKLELVQKKILIFTNSIDMAFRLKLFLEK 227
>gi|359496992|ref|XP_003635393.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 16-like, partial
[Vitis vinifera]
Length = 305
Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust.
Identities = 238/296 (80%), Positives = 266/296 (89%), Gaps = 1/296 (0%)
Query: 302 FLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRK 361
+L +FGIKSA+LNAELPQNSRLHILEEFNAGLFDYLIATD +Q KEK+Q+DEG ++ RK
Sbjct: 1 YLWQFGIKSAVLNAELPQNSRLHILEEFNAGLFDYLIATDGSQPKEKEQADEGSQIEPRK 60
Query: 362 SKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS 421
S+KH K KLDSEFGVVRGIDFKNVHTVINFEMPQNA GYVHRIGRTGRAYN+GASVSLVS
Sbjct: 61 SRKHSKQKLDSEFGVVRGIDFKNVHTVINFEMPQNAPGYVHRIGRTGRAYNSGASVSLVS 120
Query: 422 PDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRA 481
PDEM+I EEIKS +GDDEN++SN IAPFPLL +NAVESLRYRAEDV+KSVTK+AVRESRA
Sbjct: 121 PDEMEILEEIKSILGDDENKESNFIAPFPLLTKNAVESLRYRAEDVSKSVTKLAVRESRA 180
Query: 482 QDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKM 541
QDLRNEILNSEKLKAHFEVN +DLDLLKHDK LSKKP +HLRDVPDYLLD TQEA K+
Sbjct: 181 QDLRNEILNSEKLKAHFEVNQRDLDLLKHDKVLSKKPIPTHLRDVPDYLLDPTTQEASKI 240
Query: 542 VKLARAAMGNKNSSRRQGPRRKFRKS-DPLKSFSAEPTKRAGKGRMKREGRNGDDT 596
VKLARAAMGN N +RRQG RRKFRKS DPLK+FSAE K+A KG +KR+ ++ DD+
Sbjct: 241 VKLARAAMGNTNPARRQGSRRKFRKSRDPLKTFSAEAPKKAPKGGVKRKEKDNDDS 296
>gi|296090645|emb|CBI41044.3| unnamed protein product [Vitis vinifera]
Length = 301
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 237/292 (81%), Positives = 263/292 (90%), Gaps = 1/292 (0%)
Query: 306 FGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKH 365
FGIKSA+LNAELPQNSRLHILEEFNAGLFDYLIATD +Q KEK+Q+DEG ++ RKS+KH
Sbjct: 1 FGIKSAVLNAELPQNSRLHILEEFNAGLFDYLIATDGSQPKEKEQADEGSQIEPRKSRKH 60
Query: 366 PKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM 425
K KLDSEFGVVRGIDFKNVHTVINFEMPQNA GYVHRIGRTGRAYN+GASVSLVSPDEM
Sbjct: 61 SKQKLDSEFGVVRGIDFKNVHTVINFEMPQNAPGYVHRIGRTGRAYNSGASVSLVSPDEM 120
Query: 426 KIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLR 485
+I EEIKS +GDDEN++SN IAPFPLL +NAVESLRYRAEDV+KSVTK+AVRESRAQDLR
Sbjct: 121 EILEEIKSILGDDENKESNFIAPFPLLTKNAVESLRYRAEDVSKSVTKLAVRESRAQDLR 180
Query: 486 NEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLA 545
NEILNSEKLKAHFEVN +DLDLLKHDK LSKKP +HLRDVPDYLLD TQEA K+VKLA
Sbjct: 181 NEILNSEKLKAHFEVNQRDLDLLKHDKVLSKKPIPTHLRDVPDYLLDPTTQEASKIVKLA 240
Query: 546 RAAMGNKNSSRRQGPRRKFRKS-DPLKSFSAEPTKRAGKGRMKREGRNGDDT 596
RAAMGN N +RRQG RRKFRKS DPLK+FSAE K+A KG +KR+ ++ DD+
Sbjct: 241 RAAMGNTNPARRQGSRRKFRKSRDPLKTFSAEAPKKAPKGGVKRKEKDNDDS 292
>gi|384250759|gb|EIE24238.1| DEAD-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 631
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 262/611 (42%), Positives = 361/611 (59%), Gaps = 74/611 (12%)
Query: 16 EEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSG 75
EE E++A +F +LGLD RL+ AL K+ +KPT +Q A IP LEGKD+VARA+TGSG
Sbjct: 2 EEPESKAPAASTFADLGLDPRLLLALEKRQYEKPTTVQAACIPAALEGKDIVARARTGSG 61
Query: 76 KTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVV 135
KT AYLLP LH++ K + AL+ VPTRELC+QV E A+ CK +++ +
Sbjct: 62 KTLAYLLPALHKILAVPKDKQRAGWQALIFVPTRELCEQVREEAEAVATRCKADIRVSSL 121
Query: 136 QLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-------DSLKILVLD 188
+ S+ D+ + IV++TPG + + L G L++ SF L +LVLD
Sbjct: 122 AVDSAAVQRDIFLHIG---QIVVSTPGQVAQALKEGRLRAASFQPDERMRRPGLSVLVLD 178
Query: 189 EADLLLSY-GYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGD 247
EADL+LS GYEDDL+A++ +IPR CQC+LMSATSS +V++L+KL+LHNP L L +G
Sbjct: 179 EADLMLSMPGYEDDLRAIAPLIPRSCQCMLMSATSSEEVERLQKLVLHNPTTLNL--LGS 236
Query: 248 VKD--------EVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRL 299
D ++ F I+C DKLL+ + LLKL LV+KK L+F N+I+ FRL
Sbjct: 237 DADGSGAAGPGPGSAAEIEHFQIACDRSDKLLHTMVLLKLGLVRKKVLLFVNSINAGFRL 296
Query: 300 KLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSD------- 352
KLFLE FGI+SA EFN G+FDYLIATDD + + + D
Sbjct: 297 KLFLEAFGIRSA----------------EFNKGIFDYLIATDDPAKRLEQEEDAAKPAPL 340
Query: 353 ----------EGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVH 402
+G DSRK + K + D+EFGV+RGIDF+ V TVIN ++P++ YVH
Sbjct: 341 PKPAAVKGRGKGRDRDSRKRGR--KTENDNEFGVIRGIDFQGVKTVINVDVPESVQTYVH 398
Query: 403 RIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD---------ENEDSNIIAPFPLLA 453
R+GRTGRA G ++S+ +P + ++ E+++ +G E E + F L
Sbjct: 399 RVGRTGRAGQAGTAISIFTPADSEVREQLEQQLGGQPASTSGTGAEEEQQAGLRRFERLT 458
Query: 454 QNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKD 513
+ +VE LRYRAED+A+S+TK +++E+RA++LR E+LNS +L+AHFE +P DL LLKHDK
Sbjct: 459 KASVEGLRYRAEDIARSLTKSSIKEARAKELRLELLNSRRLQAHFEEHPADLALLKHDKP 518
Query: 514 LSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSR-RQGPRRKF-RKSDPLK 571
L+K SHL+ +P YL D R+A GN Q RRK R DPLK
Sbjct: 519 LAKAAAPSHLKHIPAYLKDPAAAS-------GRSASGNAGPGMLPQKKRRKMERGKDPLK 571
Query: 572 SFSAEPTKRAG 582
KR G
Sbjct: 572 GGFVRAPKRGG 582
>gi|159477789|ref|XP_001696991.1| hypothetical protein CHLREDRAFT_120099 [Chlamydomonas reinhardtii]
gi|158274903|gb|EDP00683.1| predicted protein [Chlamydomonas reinhardtii]
Length = 516
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 239/506 (47%), Positives = 328/506 (64%), Gaps = 12/506 (2%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF++LGLD RL+ AL K+G KPT +Q +IP LEGKDVVARA+TGSGKT AYLLP LH
Sbjct: 2 SFQDLGLDPRLLRALGKRGFTKPTPVQLEAIPKTLEGKDVVARARTGSGKTLAYLLPTLH 61
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
++ + A++LVPTRELCQQV E A + C + ++V + +P + L
Sbjct: 62 KILTTEDVRGSFR--AIILVPTRELCQQVAEEAAATAQHCGADITVRVC--GARLPGAAL 117
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
+ A+A IV++TPG + L G+L + + + L +LVLDEADLLLSYGYE+DL+ L+
Sbjct: 118 KRAVATAGHIVVSTPGKIATALREGLLPAAALTSRLAVLVLDEADLLLSYGYEEDLQLLA 177
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
+PR CQC+LMSATSS DV++L+KL+LHNP L L C
Sbjct: 178 PQVPRSCQCILMSATSSDDVERLQKLVLHNPITLNL----AAAGAGAAGTGAGAEEGCPR 233
Query: 267 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
DKLL+++ LL+L L +KK L+F NT+D RL+LFLE FG++ A+LNAELP NSR HIL
Sbjct: 234 PDKLLHVMALLRLGLCRKKVLLFVNTVDEGVRLRLFLEAFGVRPALLNAELPLNSRSHIL 293
Query: 327 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 386
FN GLFD+LIATDD + G R +K A+ D+EFGV RGIDFK V
Sbjct: 294 SSFNRGLFDFLIATDDKAGARLGKDGSG----KRGAKGGDGARKDAEFGVTRGIDFKGVR 349
Query: 387 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNII 446
TVIN++ P + GYVHR+GRTGRA +G ++SL +P ++ ++ + G +
Sbjct: 350 TVINYDPPSSLQGYVHRVGRTGRAGESGTAISLFTPQHSELNDDEGAGAGAGGKGRDAAL 409
Query: 447 APFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLD 506
P+ L+Q VE+LRYR EDVA+ +TK ++E+RA++L+NE+L SE+LK +FE + +
Sbjct: 410 RPYGRLSQAQVEALRYRGEDVARGITKAVIKEARAKELKNELLTSERLKEYFEDHAAEKA 469
Query: 507 LLKHDKDLSKKPPASHLRDVPDYLLD 532
LL+HDK L+ P A+HL+ +P YL D
Sbjct: 470 LLRHDKPLAAAPAAAHLKHMPAYLKD 495
>gi|359497578|ref|XP_003635571.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 16-like, partial
[Vitis vinifera]
Length = 301
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 227/280 (81%), Positives = 254/280 (90%), Gaps = 2/280 (0%)
Query: 26 KSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLL 85
K+FEELGL+ L+ AL KKGI+KPT IQ+ +IPLILEGKDVVARAKTGSGKTFAYLLPLL
Sbjct: 24 KTFEELGLEPSLIRALIKKGIEKPTPIQEVAIPLILEGKDVVARAKTGSGKTFAYLLPLL 83
Query: 86 HRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASD 145
+LF ES ++KLAP+A VLVPTRELCQQVYSEV++LIELC+GQ LKVVQLTSSM SD
Sbjct: 84 QKLFCESESRNKLAPSAFVLVPTRELCQQVYSEVLSLIELCRGQ--LKVVQLTSSMSPSD 141
Query: 146 LRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL 205
LR ALAGPPDI+++TPGC+PKCLS GVLQ+ S +SL+ILVLDEADLLLSYGYEDDLKAL
Sbjct: 142 LRVALAGPPDILVSTPGCIPKCLSAGVLQAASIIESLEILVLDEADLLLSYGYEDDLKAL 201
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
+A +PR CQCLLMSATSS+DV+KLKKLILHNP+ILTLPEVGD KDE+IPKNVQQFWISCS
Sbjct: 202 TAHVPRRCQCLLMSATSSADVEKLKKLILHNPFILTLPEVGDGKDEIIPKNVQQFWISCS 261
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEK 305
RDKLLYIL LLKLELVQKK LIFTN+IDMAFRLKLFLEK
Sbjct: 262 ARDKLLYILALLKLELVQKKILIFTNSIDMAFRLKLFLEK 301
>gi|303273436|ref|XP_003056079.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462163|gb|EEH59455.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 598
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 234/549 (42%), Positives = 333/549 (60%), Gaps = 32/549 (5%)
Query: 25 EKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPL 84
+ + LGLD ++ AL KK + PT +Q +IPL+L GKDV+ARA TGSGKT AYLLP
Sbjct: 6 DTGWPSLGLDRGILRALAKKKFKCPTAVQSRAIPLVLAGKDVLARAHTGSGKTAAYLLPA 65
Query: 85 LHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
+H++ S K+K P L+LVPT EL QQV E ++ + C L+ +LT S A
Sbjct: 66 IHKIMQRSDSKTKSNPRVLILVPTHELAQQVMKEAVSFLVECAP--TLRAGELTCSGSAD 123
Query: 145 DLRAALAG-PPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLK 203
L AG PP+I+++TP + C+ G ++ + L+ VLDEADLLLS+GYEDD++
Sbjct: 124 VLPRNFAGVPPEILVSTPSRVAACIRGGKFPPRALNSGLEFFVLDEADLLLSFGYEDDIR 183
Query: 204 ALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLP-----EVGDVKDEVIPKN-- 256
++ RGCQC+L+SATS D+ KLK ++LHNP + + G VK+E +
Sbjct: 184 CIADATERGCQCMLVSATSPDDLSKLKAIVLHNPVNVDIALENNFVSGRVKEEQVTTGKS 243
Query: 257 -----VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 311
+ + + E+DKLLY + LL+L L +KK+L+F ++ D A RL+LFL KFGI
Sbjct: 244 AVMPLISHYALEILEKDKLLYCMALLRLGLCKKKSLVFVSSPDAAVRLRLFLHKFGIPCC 303
Query: 312 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTK-----EKDQSDEGGHVDSRKSKKHP 366
+L+ ELP NSR HIL EFN G++DY+IA D + D D H K K++
Sbjct: 304 VLHEELPANSRAHILHEFNRGVYDYMIAAADDLSSSISVVNDDNKDFTKHT---KRKRNA 360
Query: 367 KAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMK 426
+ +EFGVVRGIDFK+VHTV+N ++P +A+ Y+HR+GRTGRA G +++L +P +
Sbjct: 361 MSHAQTEFGVVRGIDFKDVHTVLNLDVPISASDYIHRVGRTGRAGQPGTAITLTTPKNAR 420
Query: 427 IFEEIKSFVGDDENEDSNIIA--PFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDL 484
E++ S ++ + IA P+ +L + AVE+LRYRAED A++V + AVRE+R ++L
Sbjct: 421 ALEDMLSRHSVSRHDTRSAIALMPYKMLRREAVEALRYRAEDAARAVGRTAVREARLREL 480
Query: 485 RNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKL 544
R E+LNSE+L AHF+ NP DL LLK L HL +P Y+ K V
Sbjct: 481 RAELLNSERLAAHFDGNPTDLALLKRASCLISHQEQPHLCHLPSYIRSQK-------VTC 533
Query: 545 ARAAMGNKN 553
+ A G KN
Sbjct: 534 SSAKTGKKN 542
>gi|307107419|gb|EFN55662.1| hypothetical protein CHLNCDRAFT_23258 [Chlorella variabilis]
Length = 611
Score = 427 bits (1097), Expect = e-116, Method: Compositional matrix adjust.
Identities = 255/567 (44%), Positives = 336/567 (59%), Gaps = 70/567 (12%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF+ GLD RL+ AL+K+G +KPT +Q IP LEG+D+VARA+TGSGKT AYLLP LH
Sbjct: 2 SFDSTGLDPRLLRALSKRGFEKPTPVQAECIPKALEGRDIVARARTGSGKTLAYLLPALH 61
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
R+ +S K K ALVLVPTRELC+QV E ++ LC L + P L
Sbjct: 62 RVL--ASGKGKAGWQALVLVPTRELCEQVREEAASVASLCG--ADLSATSVAGDAP---L 114
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
RAA A +V+ TP + + L GVL + L++LVLDEADLLLSYGYE+D++AL+
Sbjct: 115 RAACATAGQLVVTTPAKLAQALREGVLTPHMLEERLQVLVLDEADLLLSYGYEEDVQALA 174
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL-----PEVGDVKDEVI--PKNVQQ 259
+PR QCLLMSATSS DVD+L KL+LH+P L L E G+++ + P
Sbjct: 175 PHVPRSTQCLLMSATSSEDVDRLTKLVLHSPVALNLLGQATGEGGEIEHFRVDLPAGCGS 234
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+ +KLL++L LLKL LVQ+K L+F N+ D R++LFLE FG+ +A+L+AELP
Sbjct: 235 GGAATEAAEKLLHLLALLKLNLVQRKVLVFVNSADSGMRVRLFLEAFGVPAAVLSAELPL 294
Query: 320 NSRLHIL------------EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPK 367
NSR HIL +EFN GLFDYLIATDD + D S G ++ KK +
Sbjct: 295 NSRHHILQARPRQGWPSAAQEFNRGLFDYLIATDDVHAGDADGST--GSSKQQRQKKGSR 352
Query: 368 A--------------KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNT 413
+ + EFGV RGIDFK V TVINFEMP + GYVHR+GRTGRA
Sbjct: 353 GDAGGGKGAVGGKRQRKEEEFGVTRGIDFKGVRTVINFEMPGSTKGYVHRVGRTGRAGQA 412
Query: 414 GASVSLVSPDEMKIFEEIKSFVGDDENED---------------------SNIIAPFPLL 452
G ++SL++P + + E+ + + D + + P L
Sbjct: 413 GTAISLLAPSDAPLAAELTAMLRDSGGGEAGGDHPAAAAAAGGAAAAAATQAGLQPHQRL 472
Query: 453 AQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDK 512
+ AVE LRYRAEDVA+S+TK A RA++L+NE+LNS++L A FE +P DL+LLKHDK
Sbjct: 473 TKAAVEGLRYRAEDVARSITKNA----RAKELKNELLNSQRLAAFFEEHPSDLNLLKHDK 528
Query: 513 DL---SKKPPASHLRDVPDYLLDAKTQ 536
L A+HL+ +P YL D Q
Sbjct: 529 PLAASGAAAAAAHLKHIPAYLRDPTLQ 555
>gi|212526270|ref|XP_002143292.1| ATP dependent RNA helicase (Dbp9), putative [Talaromyces marneffei
ATCC 18224]
gi|210072690|gb|EEA26777.1| ATP dependent RNA helicase (Dbp9), putative [Talaromyces marneffei
ATCC 18224]
Length = 621
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 251/632 (39%), Positives = 361/632 (57%), Gaps = 72/632 (11%)
Query: 4 SKEIPSKEVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEG 63
+ ++PS +V E E E + +FE L LD R+ AL K+ KPTL+Q +IPL LEG
Sbjct: 7 ANDVPSTDV-----AEGENETKTTFESLALDPRIRQALVKENFSKPTLVQSKAIPLALEG 61
Query: 64 KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKL-APAALVLVPTRELCQQVYSEVMAL 122
KD++ARAKTGSGKT AY+LP+L + S L A +AL+LVPTREL +QV +++
Sbjct: 62 KDILARAKTGSGKTAAYVLPVLQSILQRKSNDPSLKATSALILVPTRELSEQVQRVIVSF 121
Query: 123 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSL 182
C + + V LT + S RA LA PDIVI+TP + ++ L D L
Sbjct: 122 SSFCGKDI--RPVNLTQKVSDSVQRAMLADVPDIVISTPARVVSNVNNSALSL----DHL 175
Query: 183 KILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL 242
LV+DEADL+LSYGYEDD+ AL+ +PRG Q LMSAT +S+VD LK L NP IL L
Sbjct: 176 TQLVIDEADLVLSYGYEDDINALAKAVPRGVQTFLMSATLTSEVDTLKGLFCRNPVILKL 235
Query: 243 PEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLF 302
E D + QF + C+E +K L + KL+LV+ K +IF ID +RLKLF
Sbjct: 236 TETEDEGG-----GISQFAVRCAEDEKFLLTYVIFKLQLVKGKCIIFVGDIDRCYRLKLF 290
Query: 303 LEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQT------------KEKDQ 350
LE+FGIKS +LN+ELP NSR+H+++EFN G++D +IA DD + K D
Sbjct: 291 LEQFGIKSCVLNSELPANSRIHVVQEFNKGVYDIIIAADDQEVLGTKKIKKTSAIKNADN 350
Query: 351 S---------------DEGGHVDSRKSKKHPKAKLDS---EFGVVRGIDFKNVHTVINFE 392
+ +E ++ +SK + K KL ++G+ RGIDF+NV V+NF+
Sbjct: 351 NENDEDAEAELEESSDEEAQPAENAQSKSNKKQKLSGKQKDYGISRGIDFQNVACVLNFD 410
Query: 393 MPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE------------MKIFEEIKSFVGDDEN 440
+P + Y HRIGRTGRA TG ++S V P E K E + + + ++
Sbjct: 411 LPTTSKSYTHRIGRTGRAGKTGMALSFVVPKEEYGKHKPTSYPTAKHDEAVLAKIIKRQS 470
Query: 441 EDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEV 500
+ + + P+ + VES RYR D ++VT++A++E+RA+++R E++ SEKL+ HFE
Sbjct: 471 KLGHEVKPYHFEMKQ-VESFRYRMTDALRAVTRLAIQEARAREIRQELIKSEKLRRHFEE 529
Query: 501 NPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMG------NKNS 554
NP +L L+HD ++ HL+ VPDYL+ +K ++ R +G N+
Sbjct: 530 NPDELRHLRHDGEIRAVRIQPHLKHVPDYLMPSKGKQGLMKEDSQRHGVGIGKTSENRIR 589
Query: 555 SRRQGPRRKFR------KSDPLKSFSAEPTKR 580
R+ R K R KSDPLK+F+A+ K+
Sbjct: 590 KARERNRAKGRRGVAGKKSDPLKTFNAKGRKK 621
>gi|156052519|ref|XP_001592186.1| hypothetical protein SS1G_06425 [Sclerotinia sclerotiorum 1980]
gi|160380645|sp|A7EM78.1|DBP9_SCLS1 RecName: Full=ATP-dependent RNA helicase dbp9
gi|154704205|gb|EDO03944.1| hypothetical protein SS1G_06425 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 607
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 248/605 (40%), Positives = 348/605 (57%), Gaps = 55/605 (9%)
Query: 18 EEAEAEEEK-SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGK 76
EEAEA K +F LGLD RL+ + K+ Q PTL+Q +IPL LEG+D++ARAKTGSGK
Sbjct: 15 EEAEAANGKATFASLGLDARLLQGIAKQNFQSPTLVQSKAIPLTLEGRDILARAKTGSGK 74
Query: 77 TFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQ 136
T AYLLP+LH + +AL+LVPTREL QVY V + C V + V
Sbjct: 75 TAAYLLPILHSILKRKELSPTQCTSALILVPTRELADQVYKTVESFTAFCAKDV--RAVN 132
Query: 137 LTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSY 196
LT + + R+ LA PDIVIATP +T L +L +V+DEADL+LSY
Sbjct: 133 LTQRVSDAVQRSLLADSPDIVIATPARASLNANTSAL----LLTNLTHMVIDEADLVLSY 188
Query: 197 GYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN 256
GY++DL+ ++ ++P+G Q +LMSAT +S+V+ LK L NP +L L E D K
Sbjct: 189 GYDEDLQNVAKIMPKGVQTVLMSATLTSEVETLKGLFCRNPEVLKLEEAEDEG-----KG 243
Query: 257 VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAE 316
V QF + C+E +K L + + KL+L++ K +IF ID +RLKLFLE+FG +S ILN++
Sbjct: 244 VSQFVVKCAEDEKFLLVYVIFKLKLIKGKCIIFVGDIDRCYRLKLFLEQFGTRSCILNSQ 303
Query: 317 LPQNSRLHILEEFNAGLFDYLIATDD------------TQTKEKDQSDEGGH----VDSR 360
LP NSR+H++EEFN ++D +IA+D+ +T+E + D G D++
Sbjct: 304 LPVNSRIHVVEEFNKNVYDIIIASDEHEVLGDEDEPKPEETEEVEADDASGEKEDAKDAK 363
Query: 361 KSKKHPK------AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTG 414
K K P K D E+GV RGIDFKNV V+NF++P ++ Y HRIGRT RA TG
Sbjct: 364 KETKQPSKKKQKTGKKDKEYGVSRGIDFKNVACVLNFDLPTSSKSYTHRIGRTARAGQTG 423
Query: 415 ASVSLVSPDEMKIFEEIKSF--VGDDENEDSNII----------APFPLLAQNAVESLRY 462
++S V P + + S DDE + II P+ + V++ RY
Sbjct: 424 MALSFVIPSALYRKHKPTSIESAKDDEKVLAKIIKHQAKKGKEVKPYNFDMKQ-VDAFRY 482
Query: 463 RAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASH 522
R D ++VT IAV+E++A+++R E++ SEKLK HFE NP DL L+HD +L +H
Sbjct: 483 RMGDALRAVTSIAVQEAKAREIRQELMKSEKLKRHFEENPSDLYHLRHDGELRPARVQAH 542
Query: 523 LRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSR--------RQGPRRKFRKSDPLKSFS 574
L+ VPDYLL + ++ + M +R + R K RKSDPLK+F
Sbjct: 543 LKHVPDYLLPKEGKKGITGGDIGFVGMHKTTENRIRKARAANKAKGRGKGRKSDPLKTFK 602
Query: 575 AEPTK 579
A+ K
Sbjct: 603 AKSRK 607
>gi|242780444|ref|XP_002479596.1| ATP dependent RNA helicase (Dbp9), putative [Talaromyces stipitatus
ATCC 10500]
gi|218719743|gb|EED19162.1| ATP dependent RNA helicase (Dbp9), putative [Talaromyces stipitatus
ATCC 10500]
Length = 620
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 248/630 (39%), Positives = 359/630 (56%), Gaps = 66/630 (10%)
Query: 5 KEIPSKEVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGK 64
+++ + +V + E E + +FE L LD RL AL K+ KPTL+Q +IPL LEGK
Sbjct: 3 RKLDANDVPSTDATGGENEAQITFESLPLDPRLRQALVKENFSKPTLVQSKAIPLALEGK 62
Query: 65 DVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLA-PAALVLVPTRELCQQVYSEVMALI 123
D++ARAKTGSGKT AY+LP+L + S L +AL+LVPTREL +QV +++
Sbjct: 63 DILARAKTGSGKTAAYVLPVLQSILQRKSNDLSLKETSALILVPTRELSEQVQRVIVSFS 122
Query: 124 ELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLK 183
C V + V LT + S RA LA PDI+I+TP + ++ L D L+
Sbjct: 123 SFCGKAV--RSVNLTQKVSDSVQRAMLADVPDIIISTPARVVSNVNNSALSL----DHLR 176
Query: 184 ILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLP 243
LV+DEADL+LSYGYEDD+ AL+ +PRG Q LMSAT +S+VD LK L NP IL L
Sbjct: 177 QLVIDEADLVLSYGYEDDINALAKAVPRGVQTFLMSATLTSEVDTLKGLFCRNPVILKLT 236
Query: 244 EVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFL 303
E D + QF + C+E +K L + KL+LV+ K +IF ID +RLKLFL
Sbjct: 237 EAEDEGG-----GISQFAVRCAEDEKFLLTYVIFKLQLVKGKCIIFVGDIDRCYRLKLFL 291
Query: 304 EKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ---TKE------------- 347
E+FGIKS +LN+ELP NSR+H+++EFN G++D +IA DD + TK+
Sbjct: 292 EQFGIKSCVLNSELPANSRIHVVQEFNKGVYDIIIAADDQEVLGTKKIKKTAAVKNADSN 351
Query: 348 ----------KDQSDEGGHVDSRKSKKHPKAKLDS---EFGVVRGIDFKNVHTVINFEMP 394
++ SD+ D S + K KL ++G+ RGIDF+NV V+NF++P
Sbjct: 352 EVDDDAEAEIEESSDDEVQPDESASTSNKKQKLSGKQKDYGISRGIDFQNVACVLNFDLP 411
Query: 395 QNAAGYVHRIGRTGRAYNTGASVSLVSPDE------------MKIFEEIKSFVGDDENED 442
+ Y HRIGRTGRA TG ++S V P E K E + S + + +
Sbjct: 412 TTSKSYTHRIGRTGRAGKTGMALSFVVPKEEYGKHKPTSYPTAKHDEAVLSKIIKRQGKL 471
Query: 443 SNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNP 502
+ + P+ + VES RYR D ++VT++A++E+RA+++R E++ SEKL+ HFE NP
Sbjct: 472 GHEVRPYHFEMKQ-VESFRYRMTDALRAVTRLAIQEARAREIRQELIKSEKLRRHFEENP 530
Query: 503 KDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMG---------NKN 553
+L L+HD ++ HL+ VPDYL+ +K ++ R +G K
Sbjct: 531 DELRHLRHDGEIRAVRIQPHLKHVPDYLMPSKGKQGLMAEDSQRHGVGIGKTSENRIRKA 590
Query: 554 SSRRQGPRRK---FRKSDPLKSFSAEPTKR 580
R +G R+ +K+DPLK+F+A+ K+
Sbjct: 591 RERNRGKGRRGAVGKKADPLKNFNAKGRKK 620
>gi|432884660|ref|XP_004074527.1| PREDICTED: probable ATP-dependent RNA helicase DDX56-like [Oryzias
latipes]
Length = 558
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 239/586 (40%), Positives = 343/586 (58%), Gaps = 56/586 (9%)
Query: 22 AEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYL 81
A E F E+GLD RL+ A+ G +PTLIQ+ +IPL LEGKD++ARA+TGSGKT AY
Sbjct: 2 ACERLQFHEMGLDDRLLKAVADLGWSQPTLIQEKAIPLALEGKDLLARARTGSGKTAAYA 61
Query: 82 LPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSM 141
+P++ + + A LVLVPT+EL QQV + + L C V +V ++S
Sbjct: 62 VPIIQHILTSKQSVREQAVRVLVLVPTKELGQQVQTMMRQLTSFCSRDV--RVADISSKA 119
Query: 142 PASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDD 201
S R L PD+V+ TP + L+ + SL++LV+DEADL+ S+G+E D
Sbjct: 120 DVSSQRPILMEKPDVVVGTPA---RVLAHINAHNLDLQASLEVLVVDEADLIFSFGFEAD 176
Query: 202 LKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW 261
LK+L +P+ Q LMSAT + DV LK+L+LHNP +L L + + D +QQ+
Sbjct: 177 LKSLLCHLPKIYQSFLMSATFTEDVQALKELLLHNPVVLKL-QGSQLPDS---SQLQQYT 232
Query: 262 ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 321
I C E DK L + TLLKL+LV+ K L+F +D ++RLKLFLE+F I + +LN+ELP S
Sbjct: 233 IKCEEEDKFLLVYTLLKLQLVRGKTLLFVGAVDRSYRLKLFLEQFSIPACVLNSELPVQS 292
Query: 322 RLHILEEFNAGLFDYLIATDD-----------TQTKEKDQSDEGGHVDSRKSKKHPKAKL 370
R HI+ +FN G +D +IATD+ T+ KEK +D+GG KAK
Sbjct: 293 RCHIITQFNQGFYDIIIATDEQSLSPPAGSSQTKGKEKKNADKGG-----------KAK- 340
Query: 371 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE 430
D EFGV RG+DF+NV VINF+ P Y+HR+GRT RA N G ++S +S E+ + E
Sbjct: 341 DKEFGVSRGVDFQNVANVINFDFPTTVESYIHRVGRTARADNQGTALSFISHTELPLLVE 400
Query: 431 IKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILN 490
++ + D E +++ P+ + +E RYR D ++VTK AVRE+R ++++ E+LN
Sbjct: 401 VEEALSTDNAE--SVLKPYQFRMEE-IEGFRYRCRDAMRAVTKQAVREARLKEIKQELLN 457
Query: 491 SEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMG 550
SEKLK +F+ NP+DL LL+HDKDL H++++PDYL+ + + G
Sbjct: 458 SEKLKTYFDDNPRDLQLLRHDKDLHPAVVKPHMKNIPDYLIPQTLRGVVNPLS------G 511
Query: 551 NKNSSRRQGP-----RRKFRKSD----PLKSFSAEPTKRAGKGRMK 587
+ R + P R F+K+D PLKSF R +GR K
Sbjct: 512 RRKRWRVKPPAEGVARSSFKKNDPSRNPLKSF------RYTRGRNK 551
>gi|326476368|gb|EGE00378.1| ATP-dependent RNA helicase DBP9 [Trichophyton tonsurans CBS 112818]
gi|326484727|gb|EGE08737.1| ATP-dependent RNA helicase DBP9 [Trichophyton equinum CBS 127.97]
Length = 618
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 245/608 (40%), Positives = 348/608 (57%), Gaps = 67/608 (11%)
Query: 26 KSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLL 85
+ FE+ GLD RL+ AL + KPTL+Q +IPL L GKD++ARAKTGSGKT AYL+P+L
Sbjct: 24 RHFEDFGLDPRLLQALTSQNFSKPTLVQAEAIPLALSGKDILARAKTGSGKTAAYLIPIL 83
Query: 86 HRLFNE--SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPA 143
++ + + P K + + LVLVPTREL QQV+ V A E C + + LT +
Sbjct: 84 QKILQKKAADPAHK-SISTLVLVPTRELAQQVHKTVTAFSEFCSKDI--RSGNLTQKVSD 140
Query: 144 SDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLK 203
+ RA LA PDIVI+TP ++ L D++ +V+DEADLLLSYGYE D++
Sbjct: 141 AVQRALLADLPDIVISTPARAIVNVNNSAL----VLDNISQVVIDEADLLLSYGYEQDMQ 196
Query: 204 ALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWIS 263
L+ IPRG Q LMSAT +S+VD LK L +P IL L E D + QF +
Sbjct: 197 NLAKAIPRGVQTFLMSATLTSEVDTLKGLFCRSPAILKLEEAEDEG-----AGISQFAVK 251
Query: 264 CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
C+E DK L + KL+LV+ K +IF +D +RLKLFLE+FGIKS ILN+ELP NSR+
Sbjct: 252 CAEDDKFLLTYVIFKLQLVKGKCIIFVGDVDRCYRLKLFLEQFGIKSCILNSELPANSRI 311
Query: 324 HILEEFNAGLFDYLIATDDTQT-------KEKDQSD--------------------EGGH 356
H +EEFN G++D +IA DD + KE +S+ E
Sbjct: 312 HAVEEFNKGVYDIIIAADDQEVIGKIESKKEPSESEVPIADGATEENKDLSEPEEVEEKA 371
Query: 357 VDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGAS 416
S K+KK ++ + ++G+ RGIDF++V V+NF++P A Y HRIGRTGRA TG +
Sbjct: 372 APSNKNKKRKRSGKEKDYGISRGIDFQDVACVLNFDLPTTAKSYTHRIGRTGRAGKTGMA 431
Query: 417 VSLVSPDEM------KIFEEIK---SFVGDDENEDSNI---IAPFPLLAQNAVESLRYRA 464
+S V P E+ IF K S + E + + + P+ + +E RYR
Sbjct: 432 LSFVVPSELYGKHKPTIFPPAKNDESVLAKIEKRQAKMGREVKPYH-FDKKQIEVFRYRM 490
Query: 465 EDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLR 524
D ++VT+IAV+E+RA+++R E++ SEKLK HFE NP++L L+HD++L S L+
Sbjct: 491 TDALRAVTRIAVQEARAKEIRQELVKSEKLKRHFEENPQELRELRHDQELGSVRVQSQLK 550
Query: 525 DVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRK-------------FRKSDPLK 571
+VP+YL+ K + + + + K +R + R+K RK DPLK
Sbjct: 551 NVPEYLMPTKGKSSLTSEDIGFVGLHKKKENRIRQARQKNRARGRIAKKGGAGRKIDPLK 610
Query: 572 SFSAEPTK 579
SF ++ K
Sbjct: 611 SFKSKVKK 618
>gi|440633789|gb|ELR03708.1| ATP-dependent RNA helicase dbp9 [Geomyces destructans 20631-21]
Length = 620
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 240/616 (38%), Positives = 356/616 (57%), Gaps = 74/616 (12%)
Query: 18 EEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKT 77
EE +A+E SF +LGLD RL+ A+ K+ + PTL+Q+ +IPL ++G+DV+ARAKTGSGKT
Sbjct: 15 EETKAQESNSFADLGLDARLLQAIAKQNFKAPTLVQKKAIPLAIKGRDVLARAKTGSGKT 74
Query: 78 FAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQL 137
AYLLP+LH + + +K AAL+LVPTREL QV+ V C V + + L
Sbjct: 75 AAYLLPILHAILKQKEISTKPCTAALILVPTRELADQVFKAVELFTSFCAKDV--RAINL 132
Query: 138 TSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYG 197
T + + R+ LA PDIV+ATP ++T L D+L LV+DEADL+LSYG
Sbjct: 133 TQKVSDAVQRSLLADAPDIVVATPARAALNINTSALS----LDNLTHLVIDEADLVLSYG 188
Query: 198 YEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNV 257
Y++DL+ ++ + +G Q +LMSAT +S+VD LK L NP +L L E D +E +
Sbjct: 189 YDEDLQNVAKTMRKGVQTILMSATLTSEVDTLKGLFCRNPAVLKLDEQNDEGEE-----I 243
Query: 258 QQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAEL 317
Q+ + C+E +K L I + KL+L++ K ++F ID +RLKLFLE+FGIKS ILN+EL
Sbjct: 244 SQYVVKCAEDEKFLLIYVIFKLKLIKGKCIVFVQDIDRCYRLKLFLEQFGIKSCILNSEL 303
Query: 318 PQNSRLHILEEFNAGLFDYLIATDDTQT--KEKD-----QSDEGGHVDSRKSKKHPKAKL 370
P NSR+H++ EFN ++D +IA+D+ + E+D + +E + +K+ + ++
Sbjct: 304 PVNSRIHVVAEFNKNVYDIIIASDEYEIIGDEEDAPRVQELEEATPEEPKKAAGDDEMEV 363
Query: 371 D------------------------SEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGR 406
D E+GV RGIDFKNV V+NF+ P + Y HR+GR
Sbjct: 364 DVAESEEVVKEEKPAKKKRKQAKRDKEYGVSRGIDFKNVACVLNFDFPTTSKSYTHRVGR 423
Query: 407 TGRAYNTGASVSLVSP------------DEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQ 454
TGRA +G ++S V P + K EE+ + + + + + P+ +
Sbjct: 424 TGRAGQSGMALSFVIPADQYRKHKPTSVESCKHDEEVLAKIIRHQTKKGKEVKPYNFDMK 483
Query: 455 NAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDL 514
VE+ RYR D ++VT+IAVRE+R ++LR E++ S+KLK HFE NP+DL L+HD +L
Sbjct: 484 Q-VEAFRYRMGDALRAVTRIAVREARTRELRQELMKSDKLKRHFEENPEDLHHLRHDGEL 542
Query: 515 SKKPPASHLRDVPDYLLDAKTQEAC--------------KMVKLARAAMGNKNSSRRQGP 560
H++ VP YL+ + Q+A ++ ARAA N S+ +G
Sbjct: 543 RAAKVQGHMKHVPSYLMPSGGQKAITGELGIVGIRKESENRIRKARAA----NKSKGRGA 598
Query: 561 -RRKFRKSDPLKSFSA 575
K ++ DPLKSF A
Sbjct: 599 FGSKAKRHDPLKSFRA 614
>gi|156407059|ref|XP_001641362.1| predicted protein [Nematostella vectensis]
gi|156228500|gb|EDO49299.1| predicted protein [Nematostella vectensis]
Length = 507
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 226/512 (44%), Positives = 319/512 (62%), Gaps = 16/512 (3%)
Query: 21 EAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAY 80
E E+ SF+ +GLD R+V A++K KPT IQ+ +I L LEGKDV+ARAKTGSGKT AY
Sbjct: 4 EDEQSLSFDSMGLDDRIVKAISKLNWSKPTPIQEKAITLALEGKDVLARAKTGSGKTAAY 63
Query: 81 LLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSS 140
+P++ R+ E + AL+LVPT+EL QQ L C +V++ V +
Sbjct: 64 AIPVVQRILQEKQTCKESYIRALILVPTKELAQQAARNAKELSSCCAREVRVADVA-QGN 122
Query: 141 MPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKS--FSDSLKILVLDEADLLLSYGY 198
+P++ + L PDIV+ TP + G +Q+K+ DSL++LV+DEADL+ SYGY
Sbjct: 123 LPST--KPLLMDKPDIVVGTPSGI-----LGHIQAKNMDLKDSLQMLVIDEADLVFSYGY 175
Query: 199 EDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ 258
EDDLK L + +P+ Q LMSAT + DV LKKL+LHNP L L E +D+ +
Sbjct: 176 EDDLKVLLSHLPKIYQAFLMSATLTDDVKALKKLVLHNPVTLKLNESQLPEDD----RLV 231
Query: 259 QFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELP 318
Q+ I C DK L I TLLKL LV+ K L+F N ID +RLKLFLE+F IK+ +LN+ELP
Sbjct: 232 QYLIKCEPDDKFLLIYTLLKLRLVRGKTLLFVNGIDRCYRLKLFLEQFSIKACVLNSELP 291
Query: 319 QNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVR 378
NSRLHI+EEFN ++DY+IA+D+ S + S + K D E+GV R
Sbjct: 292 HNSRLHIVEEFNRDVYDYIIASDEASLDLAPSSRILAFFFYKISFIFRRKK-DKEYGVAR 350
Query: 379 GIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD 438
GIDF+ V VINF+ P Y+HR+GRT R ++G ++S V+ + + + + + +
Sbjct: 351 GIDFQGVENVINFDFPSTVEAYIHRVGRTARGDSSGTALSFVTHSDNTVISKAEERLAQE 410
Query: 439 ENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHF 498
D + PF + +E RYRA D ++VTK AV+E+R ++++ EILNSEKLKA+F
Sbjct: 411 TGSDKEVFKPFQFRMEE-IEGFRYRARDAIRAVTKTAVKEARLKEIKREILNSEKLKAYF 469
Query: 499 EVNPKDLDLLKHDKDLSKKPPASHLRDVPDYL 530
E NP+DL +L+HDK+L +H+++VPDYL
Sbjct: 470 EDNPRDLQVLRHDKELHPAKVQAHMKNVPDYL 501
>gi|347838407|emb|CCD52979.1| similar to ATP-dependent RNA helicase dbp9 [Botryotinia fuckeliana]
Length = 607
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 238/599 (39%), Positives = 342/599 (57%), Gaps = 54/599 (9%)
Query: 23 EEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLL 82
+E +F LGLD RL+ + K+ Q PTL+Q +IPL LEG+D++ARAKTGSGKT AYLL
Sbjct: 21 KENVTFASLGLDARLLQGIAKQNFQSPTLVQSKAIPLTLEGRDILARAKTGSGKTAAYLL 80
Query: 83 PLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMP 142
P+LH + S AL+LVPTREL QVY V + C V + V LT +
Sbjct: 81 PILHSILKRKELSSTQCTTALILVPTRELADQVYKTVESFTAFCAKDV--RAVNLTQRVS 138
Query: 143 ASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 202
+ R+ LA PDIVIATP +T L + + +V+DEADL+LSYGY++DL
Sbjct: 139 DAVQRSLLADSPDIVIATPARASLNANTSALSLTNLTH----MVIDEADLVLSYGYDEDL 194
Query: 203 KALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWI 262
+ ++ ++P+G Q +LMSAT +S+V+ LK L NP +L L E D + V QF +
Sbjct: 195 QNVAKIMPKGVQTVLMSATLTSEVETLKGLFCRNPEVLKLEEAEDEGE-----GVSQFVV 249
Query: 263 SCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 322
C+E +K L + KL+L++ K +IF ID +RLKLFLE+FG +S ILN++LP NSR
Sbjct: 250 KCAEDEKFLLTYVIFKLKLIKGKCIIFVGDIDRCYRLKLFLEQFGTRSCILNSQLPVNSR 309
Query: 323 LHILEEFNAGLFDYLIATD--------------DTQTKEKDQSDEGGH--VDSRKSKKHP 366
+H++EEFN ++D +IA+D D + E D +DE D++K K P
Sbjct: 310 IHVVEEFNKNVYDIIIASDEHEVLGDEDEPKSGDAEEVEADDADEEKEDAKDAKKETKQP 369
Query: 367 K------AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLV 420
K D E+GV RGIDFKNV V+NF++P ++ Y HRIGRT RA TG ++S V
Sbjct: 370 SKKKQKTGKKDKEYGVSRGIDFKNVACVLNFDLPTSSKSYTHRIGRTARAGQTGMALSFV 429
Query: 421 SPDEM------------KIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVA 468
P E K E++ + + + + + P+ + V++ RYR D
Sbjct: 430 IPSEQYRKHKPTSIESAKNDEKVLAKIVKHQAKKGKEVKPYNFDMKQ-VDAFRYRMGDAL 488
Query: 469 KSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPD 528
++VT IAV+E++ +++R E++ S+KLK HFE NP DL L+HD +L +HL+ VPD
Sbjct: 489 RAVTSIAVQEAKTREIRQELMKSDKLKRHFEENPGDLYHLRHDGELRPARVQAHLKHVPD 548
Query: 529 YLLDAKTQEACKMVKLARAAMGNKNSSR--------RQGPRRKFRKSDPLKSFSAEPTK 579
YLL + ++ + M +R + R K RKSDPLK+F A+ K
Sbjct: 549 YLLPKEGKKGITGGDVGFVGMHKTTENRIRKARAANKAKGRGKGRKSDPLKTFKAKSKK 607
>gi|160380696|sp|A6SNX1.2|DBP9_BOTFB RecName: Full=ATP-dependent RNA helicase dbp9
Length = 607
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 238/599 (39%), Positives = 342/599 (57%), Gaps = 54/599 (9%)
Query: 23 EEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLL 82
+E +F LGLD RL+ + K+ Q PTL+Q +IPL LEG+D++ARAKTGSGKT AYLL
Sbjct: 21 KENVTFASLGLDARLLQGIAKQNFQSPTLVQSKAIPLTLEGRDILARAKTGSGKTAAYLL 80
Query: 83 PLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMP 142
P+LH + S AL+LVPTREL QVY V + C V + V LT +
Sbjct: 81 PILHSILKRKELSSTQCTTALILVPTRELADQVYKTVESFTAFCAKDV--RAVNLTQRVS 138
Query: 143 ASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 202
+ R+ LA PDIVIATP +T L + + +V+DEADL+LSYGY++DL
Sbjct: 139 DAVQRSLLADSPDIVIATPARASLNANTSALSLANLTH----MVIDEADLVLSYGYDEDL 194
Query: 203 KALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWI 262
+ ++ ++P+G Q +LMSAT +S+V+ LK L NP +L L E D + V QF +
Sbjct: 195 QNVAKIMPKGVQTVLMSATLTSEVETLKGLFCRNPEVLKLEEAEDEGE-----GVSQFVV 249
Query: 263 SCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 322
C+E +K L + KL+L++ K +IF ID +RLKLFLE+FG +S ILN++LP NSR
Sbjct: 250 KCAEDEKFLLTYVIFKLKLIKGKCIIFVGDIDRCYRLKLFLEQFGTRSCILNSQLPVNSR 309
Query: 323 LHILEEFNAGLFDYLIATD--------------DTQTKEKDQSDEGGH--VDSRKSKKHP 366
+H++EEFN ++D +IA+D D + E D +DE D++K K P
Sbjct: 310 IHVVEEFNKNVYDIIIASDEHEVLGDEDEPKSGDAEEVEADDADEEKEDAKDAKKETKQP 369
Query: 367 K------AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLV 420
K D E+GV RGIDFKNV V+NF++P ++ Y HRIGRT RA TG ++S V
Sbjct: 370 SKKKQKTGKKDKEYGVSRGIDFKNVACVLNFDLPTSSKSYTHRIGRTARAGQTGMALSFV 429
Query: 421 SPDEM------------KIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVA 468
P E K E++ + + + + + P+ + V++ RYR D
Sbjct: 430 IPSEQYRKHKPTSIESAKNDEKVLAKIVKHQAKKGKEVKPYNFDMKQ-VDAFRYRMGDAL 488
Query: 469 KSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPD 528
++VT IAV+E++ +++R E++ S+KLK HFE NP DL L+HD +L +HL+ VPD
Sbjct: 489 RAVTSIAVQEAKTREIRQELMKSDKLKRHFEENPGDLYHLRHDGELRPARVQAHLKHVPD 548
Query: 529 YLLDAKTQEACKMVKLARAAMGNKNSSR--------RQGPRRKFRKSDPLKSFSAEPTK 579
YLL + ++ + M +R + R K RKSDPLK+F A+ K
Sbjct: 549 YLLPKEGKKGITGGDVGFVGMHKTTENRIRKARAANKAKGRGKGRKSDPLKTFKAKSKK 607
>gi|322700573|gb|EFY92327.1| ATP-dependent RNA helicase dbp9 [Metarhizium acridum CQMa 102]
Length = 612
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 240/606 (39%), Positives = 359/606 (59%), Gaps = 49/606 (8%)
Query: 8 PSKEVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVV 67
P E ++ + E+ + E +F +LGLD RLV A+ ++ KPTL+Q+ +IPL L GKDV+
Sbjct: 13 PEPENQKRTKAESTGDAELTFADLGLDPRLVQAVAEQTFLKPTLVQRKAIPLALNGKDVL 72
Query: 68 ARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCK 127
++KTGSGKT AY+LP+L + + + ++ A +AL+LVPTREL QV+ + C
Sbjct: 73 CKSKTGSGKTAAYVLPVLTAILKKKAAETVAATSALILVPTRELADQVFKVIEQFSSFCA 132
Query: 128 GQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVL 187
V + V+LT + + R+ L+ PDIVI+TP + + QS D L LVL
Sbjct: 133 KDV--RAVKLTDKLSDAVQRSLLSTNPDIVISTPARAWYNVKSN--QSSLSLDKLTHLVL 188
Query: 188 DEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHN--PYILTLPEV 245
DEADLLLSYGY++DL+ LS IP+G Q ++MSAT ++++D LKK + P +L L E
Sbjct: 189 DEADLLLSYGYDEDLENLSWSIPKGIQTIMMSATLTTEIDSLKKTFYRDNAPTLLDLEE- 247
Query: 246 GDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEK 305
D + E + Q + C+E +K L + KL+LV+ K +IF +D +RLKLF E+
Sbjct: 248 PDAEGE----GITQLFTKCAEDEKFLLAYIIFKLQLVKGKCIIFVGDVDRCYRLKLFFEQ 303
Query: 306 FGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQT---------KEKDQSDEGGH 356
FGI+S ILN+ELP NSR+H++EEFN ++D +IA+D+ + +E + D+
Sbjct: 304 FGIRSCILNSELPVNSRIHVVEEFNRNVYDIIIASDEKEVLGNEEKADEEENHEGDQEED 363
Query: 357 VDSRKSKKHPK-----AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAY 411
D+ K ++ PK +K D E+GV RGIDFKNV VINF++P +A+ Y HR+GRT RA
Sbjct: 364 SDAEKEERRPKKKRKASKRDKEYGVSRGIDFKNVAAVINFDLPTSASSYTHRVGRTARAG 423
Query: 412 NTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNI-------------IAPFPLLAQNAVE 458
G ++S V P E + + + + + EN++ + I P+ + VE
Sbjct: 424 KAGMALSFVIPKE-QFRKHMPTSIQSAENDEKVLARITKQQAKKGKEIKPYNFNTKQ-VE 481
Query: 459 SLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKP 518
+ RYR D ++VTK+AVRE+R ++LR E++ SEKLK +FE NP +++ L+HD +L
Sbjct: 482 AFRYRMNDALRAVTKVAVREARTRELRQELMKSEKLKRYFEENPSEINHLRHDGELRTAR 541
Query: 519 PASHLRDVPDYLL--DAK---TQEACKMVKLARAA----MGNKNSSRRQGPRRKFRKSDP 569
+HL+ +PDYLL D K T+ V L + ++R G R RK DP
Sbjct: 542 QQAHLKHIPDYLLPKDGKKGLTENDIGFVPLRKPGKLRDHRKGKGTKRGGFRVGARKGDP 601
Query: 570 LKSFSA 575
LK+F A
Sbjct: 602 LKTFKA 607
>gi|330798693|ref|XP_003287385.1| hypothetical protein DICPUDRAFT_32400 [Dictyostelium purpureum]
gi|325082590|gb|EGC36067.1| hypothetical protein DICPUDRAFT_32400 [Dictyostelium purpureum]
Length = 634
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 234/583 (40%), Positives = 342/583 (58%), Gaps = 51/583 (8%)
Query: 25 EKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPL 84
E +F+++GLD R++ AL K G + P+L+Q +IPL L+GKD++A+A+TGSGKT AY +P+
Sbjct: 15 ETTFDQMGLDSRILRALKKMGFKNPSLVQSKAIPLSLQGKDILAKARTGSGKTAAYSIPI 74
Query: 85 LHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
+ ++ + A++LVPTRELC+QV L C + VVQL
Sbjct: 75 IQKILTAKEKTNIKGVKAVILVPTRELCEQVKQHFTQLS--CYSSHLVSVVQLGGDKSID 132
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
+ + L PD++I+TP + + L +Q +S SL ILV+DEADL+LSYG+++D+
Sbjct: 133 EQKGLLRDIPDVIISTPTRLVQHLQNKTIQLQS---SLDILVIDEADLVLSYGHQEDINI 189
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264
+ + +P+ CQC LMSAT + V++LKKL+LH P IL L E D+ I N+ ++ I C
Sbjct: 190 IKSFLPKVCQCFLMSATLTQQVEELKKLVLHTPAILKLEE-----DKAIQTNLTEYSIKC 244
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
+E DK L I +LL+L L+Q K L F N + ++LKLF E+F IK A+LN+ELP NSR +
Sbjct: 245 AETDKFLLIFSLLRLRLMQGKILFFVNDTNNCYKLKLFFERFHIKCAVLNSELPINSRHN 304
Query: 325 ILEEFNAGLFDYLIATDDTQTKEKD----------------QSDEGGHVDSR-------- 360
I+ +FN G+FDYLIATD++ + S +G D
Sbjct: 305 IILQFNKGIFDYLIATDESFSSTTSTLKEEELEDKDEEEMEDSIDGEEEDIENLIKKNIT 364
Query: 361 KSKKHPKA--KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVS 418
KS K K+ K+D E+GV RGIDFKNV V+NF+ P+ Y+HRIGRT R N G ++S
Sbjct: 365 KSNKSNKSDPKVDKEYGVARGIDFKNVDIVVNFDFPRTIKNYIHRIGRTARGTNKGIALS 424
Query: 419 LVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRE 478
V+ + + +++ G E + PF NA+E RYR EDV ++V +++E
Sbjct: 425 FVTFNNENLLSKVQKTRG----EAGYNLKPFE-FKMNAIEGFRYRVEDVLRNVNVRSIKE 479
Query: 479 SRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEA 538
+R +L+ E+LN+EKLK+HF NP+DL LKHD L KK ++HL+ VP+YLL + +
Sbjct: 480 ARKSELKQEVLNNEKLKSHFSENPQDLLALKHDTALIKKQVSNHLKYVPEYLLPQQFKSH 539
Query: 539 CKMVKLARAAMGNK-------NSSRRQGPRRKFRKSDPLKSFS 574
KL N N S++ RR RK D LK+ S
Sbjct: 540 VDQ-KLEVIPSTNNPEKVRGVNYSKKTEQRR--RKKDILKTLS 579
>gi|410903870|ref|XP_003965416.1| PREDICTED: probable ATP-dependent RNA helicase DDX56-like [Takifugu
rubripes]
Length = 563
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 241/579 (41%), Positives = 340/579 (58%), Gaps = 36/579 (6%)
Query: 22 AEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYL 81
A E F E+G+D RL+ A+ G +PTLIQ+ +IPL LEGKD++ARA+TGSGKT AY
Sbjct: 2 ASERLQFHEMGIDDRLLKAVADLGWSQPTLIQEKAIPLALEGKDLLARARTGSGKTAAYA 61
Query: 82 LPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSM 141
+P++ R+ + AL+LVPT+EL QQV + + L C V +V ++
Sbjct: 62 VPVIQRILASKQSVREQDVKALILVPTKELGQQVQTMIRQLTAFCSRDV--RVADVSGKA 119
Query: 142 PASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDD 201
S R L PDIV+ TP + L+ Q+ SL++LV+DEADLL S+G+E D
Sbjct: 120 DVSTQRPILMEKPDIVVGTPS---RILAHLNAQNLLLHSSLEMLVVDEADLLFSFGFEAD 176
Query: 202 LKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW 261
LK L +P+ Q LMSAT S DV LK+L+LHNP IL L + + D +QQ+
Sbjct: 177 LKNLLCHLPKIYQSFLMSATLSEDVQSLKELLLHNPIILKL-QGSQLPDS---SQLQQYS 232
Query: 262 ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 321
I+C E DK L I TLLKL LVQ K L+F +D ++RLKLFLE+FGI + +LN+ELP S
Sbjct: 233 INCEEEDKFLLIYTLLKLRLVQGKTLLFVGAVDRSYRLKLFLEQFGIPTCVLNSELPVGS 292
Query: 322 RLHILEEFNAGLFDYLIATDD------TQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFG 375
R HI+ +FN G +DY+IA D+ + ++ G + S+K K+K D EFG
Sbjct: 293 RCHIISQFNQGFYDYIIAADEESLAVPAEGAASAEAAAGKGKKKKNSEKAGKSK-DKEFG 351
Query: 376 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
V RG+DF+NV VINF+ P Y+HR+GRT RA N G ++S +S E+ + +++ +
Sbjct: 352 VSRGVDFQNVSNVINFDFPTTVESYIHRVGRTARADNPGTALSFISHKEVALLSDVEEAL 411
Query: 436 GDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLK 495
D + +++ P+ + +E RYR D +SVTK AVRE+R ++++ E+LNSEKLK
Sbjct: 412 TGDHS--GSVLKPYKFKMEE-IEGFRYRCRDAMRSVTKQAVREARLKEIKQELLNSEKLK 468
Query: 496 AHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKN-S 554
+FE NP+DL LL+HDKDL HLR++PDYL+ + + KN
Sbjct: 469 TYFEDNPRDLQLLRHDKDLHPAVVKPHLRNLPDYLIPDTLRNVIN-------PLSCKNRR 521
Query: 555 SRRQGPR--------RKFRKSDPLKSFSAEPTK-RAGKG 584
R++ P+ + R DPLKSF K R GK
Sbjct: 522 KRKEKPKLGVVKTSFKNTRGKDPLKSFRYTRGKNRKGKA 560
>gi|95132450|gb|AAI16543.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [Danio rerio]
gi|182891866|gb|AAI65407.1| Ddx56 protein [Danio rerio]
Length = 557
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 234/562 (41%), Positives = 338/562 (60%), Gaps = 13/562 (2%)
Query: 23 EEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLL 82
E+ F E+GLD RL+ AL G +PTLIQ+ +IPL+LEGKD++ARA+TGSGKT AY +
Sbjct: 3 EDSVRFHEMGLDDRLLKALADLGWSQPTLIQEKAIPLVLEGKDLLARARTGSGKTAAYAV 62
Query: 83 PLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMP 142
PL+ R+ + A A+VLVPT+EL QQV + + L C V +V ++
Sbjct: 63 PLIQRVLTSKQTVREQAVRAVVLVPTKELGQQVQTMIRQLTVYCSRDV--RVADISGKAD 120
Query: 143 ASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 202
S + L PDIV++TP + ++ LQ S SL++LV+DEADLL S+G+E DL
Sbjct: 121 LSAQKPILMEKPDIVVSTPSRIQAHINAQNLQLHS---SLEMLVIDEADLLFSFGFEADL 177
Query: 203 KALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWI 262
K L +P+ Q LMSAT + DV LK+L+LHNP L L + + D +QQF I
Sbjct: 178 KNLLCHLPKIYQAFLMSATLNDDVQALKELVLHNPVTLKL-QGSQLPDS---SQLQQFSI 233
Query: 263 SCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 322
C E DK L I T+LKL L+Q K L+F + +D ++RLKLFLE+F I + +LN+ELP +SR
Sbjct: 234 KCEEEDKFLLIYTMLKLGLIQGKTLLFVSDVDRSYRLKLFLEQFSIPACVLNSELPVHSR 293
Query: 323 LHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDF 382
HI+ +FN G ++Y+IA+D+ + S + K K K D E+GV RGIDF
Sbjct: 294 CHIISQFNQGFYNYIIASDEQGLESPAGSSQKTQEKGNKKKGTGKKGKDKEYGVSRGIDF 353
Query: 383 KNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENED 442
NV VINF+ P + Y+HR+GRT RA N G ++S +S E+ + E+++ + D N
Sbjct: 354 HNVSNVINFDFPTSVESYIHRVGRTARADNPGTALSFISHAELSMLSEVENALTGDSN-- 411
Query: 443 SNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNP 502
+ ++ P+ + +E RYR D +SVTK AV+E+R ++++ E+LNSEKLK +FE NP
Sbjct: 412 NCVLKPYEFRMEE-IEGFRYRCRDGMRSVTKQAVKEARLKEIKQELLNSEKLKTYFEDNP 470
Query: 503 KDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRR 562
+DL LL+HDKDL H+++VP+YL+ + + R K+S +
Sbjct: 471 RDLQLLRHDKDLHPAIIKPHMKNVPEYLIPTALKSLVNPLNQRRKRKKVKSSGVMLSSFK 530
Query: 563 K-FRKSDPLKSFSAEPTKRAGK 583
K +R +PLKSF +R K
Sbjct: 531 KNYRGRNPLKSFRYAKKRRGEK 552
>gi|154292863|ref|XP_001546999.1| hypothetical protein BC1G_14464 [Botryotinia fuckeliana B05.10]
Length = 676
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 236/596 (39%), Positives = 340/596 (57%), Gaps = 54/596 (9%)
Query: 23 EEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLL 82
+E +F LGLD RL+ + K+ Q PTL+Q +IPL LEG+D++ARAKTGSGKT AYLL
Sbjct: 21 KENVTFASLGLDARLLQGIAKQNFQSPTLVQSKAIPLTLEGRDILARAKTGSGKTAAYLL 80
Query: 83 PLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMP 142
P+LH + S AL+LVPTREL QVY V + C V + V LT +
Sbjct: 81 PILHSILKRKELSSTQCTTALILVPTRELADQVYKTVESFTAFCAKDV--RAVNLTQRVS 138
Query: 143 ASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 202
+ R+ LA PDIVIATP +T L + + +V+DEADL+LSYGY++DL
Sbjct: 139 DAVQRSLLADSPDIVIATPARASLNANTSALSLANLTH----MVIDEADLVLSYGYDEDL 194
Query: 203 KALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWI 262
+ ++ ++P+G Q +LMSAT +S+V+ LK L NP +L L E D + V QF +
Sbjct: 195 QNVAKIMPKGVQTVLMSATLTSEVETLKGLFCRNPEVLKLEEAEDEGE-----GVSQFVV 249
Query: 263 SCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 322
C+E +K L + KL+L++ K +IF ID +RLKLFLE+FG +S ILN++LP NSR
Sbjct: 250 KCAEDEKFLLTYVIFKLKLIKGKCIIFVGDIDRCYRLKLFLEQFGTRSCILNSQLPVNSR 309
Query: 323 LHILEEFNAGLFDYLIATD--------------DTQTKEKDQSDEGGH--VDSRKSKKHP 366
+H++EEFN ++D +IA+D D + E D +DE D++K K P
Sbjct: 310 IHVVEEFNKNVYDIIIASDEHEVLGDEDEPKSGDAEEVEADDADEEKEDAKDAKKETKQP 369
Query: 367 KAKLDS------EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLV 420
K E+GV RGIDFKNV V+NF++P ++ Y HRIGRT RA TG ++S V
Sbjct: 370 SKKKQKTGKKDKEYGVSRGIDFKNVACVLNFDLPTSSKSYTHRIGRTARAGQTGMALSFV 429
Query: 421 SPDEM------------KIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVA 468
P E K E++ + + + + + P+ + V++ RYR D
Sbjct: 430 IPSEQYRKHKPTSIESAKNDEKVLAKIVKHQAKKGKEVKPYNFDMKQ-VDAFRYRMGDAL 488
Query: 469 KSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPD 528
++VT IAV+E++ +++R E++ S+KLK HFE NP DL L+HD +L +HL+ VPD
Sbjct: 489 RAVTSIAVQEAKTREIRQELMKSDKLKRHFEENPGDLYHLRHDGELRPARVQAHLKHVPD 548
Query: 529 YLLDAKTQEACKMVKLARAAMGNKNSSR--------RQGPRRKFRKSDPLKSFSAE 576
YLL + ++ + M +R + R K RKSDPLK+F A+
Sbjct: 549 YLLPKEGKKGITGGDVGFVGMHKTTENRIRKARAANKAKGRGKGRKSDPLKTFKAK 604
>gi|320587772|gb|EFX00247.1| ATP dependent RNA helicase [Grosmannia clavigera kw1407]
Length = 613
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 240/586 (40%), Positives = 345/586 (58%), Gaps = 48/586 (8%)
Query: 22 AEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYL 81
A +E SF +LGLD RLV A+ ++ +KPTL+Q+ +IPL L G+D++A+AKTGSGKT AYL
Sbjct: 38 AAKETSFADLGLDPRLVQAVARQSFEKPTLVQRKAIPLALNGQDLLAKAKTGSGKTAAYL 97
Query: 82 LPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSM 141
LP+L + + +AL+L PTREL QV+ + C + V+LT +
Sbjct: 98 LPVLQVILKRKQTDTTAFTSALILAPTRELADQVFKSIAEFSSFCAKDIT--AVKLTDKV 155
Query: 142 PASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDD 201
+ LR+ L+ PDIV++TP +S+ + D L LVLDEADL+LSYGY +D
Sbjct: 156 SDAVLRSLLSNMPDIVVSTPSRAWHAVSSSFMT----LDKLTNLVLDEADLVLSYGYSED 211
Query: 202 LKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW 261
L+ +S +P+G Q +LMSAT +++VD LK ++ NP +L L E D + E V Q+
Sbjct: 212 LEQISGSLPKGIQTILMSATLTTEVDTLKGMLCRNPTLLNLEE-RDAEGE----GVTQYV 266
Query: 262 ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 321
+ C+E +K L + KL+LV K L+F + +D +RLKLF E+FGI+S ILN+ELP NS
Sbjct: 267 VKCAEDEKFLLAYIIFKLKLVTGKCLVFVSDVDRCYRLKLFFEQFGIRSCILNSELPVNS 326
Query: 322 RLHILEEFNAGLFDYLIATDDTQ-TKEKDQSDEGGHVDSRKSKKHP------KAKLDSEF 374
R++ +EEFN ++D +IA+D+ + ++Q+DE + + ++ P AK D EF
Sbjct: 327 RINCIEEFNRNMYDIIIASDEHELLGNEEQADEQATKEGKGAEAQPKKKRKTAAKRDREF 386
Query: 375 GVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 434
GV RGIDFKNV VINF++P ++ Y HRIGRT RA TG ++S V P + + I +
Sbjct: 387 GVSRGIDFKNVRAVINFDLPTSSKSYTHRIGRTARAGQTGMALSFVVPSAL-YRKHIPTT 445
Query: 435 VGDDENEDSNI-------------IAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRA 481
V EN++ + + P+ + VE+ RYR D +SVTK+AVRE+R
Sbjct: 446 VESAENDEKVLGRITRQQAKLGKEVKPYDFDMKQ-VEAFRYRMNDALRSVTKVAVREART 504
Query: 482 QDLRNEILNSEKLKAHFEVNPKDLD-LLKHDKDLSKKPPASHLRDVPDYLL-----DAKT 535
+++R E+L SEKLK HFE NP +L L +HD +L HL+ VPDYLL A T
Sbjct: 505 REIRQELLKSEKLKRHFEENPGELQHLARHDHELRTLRAQPHLKHVPDYLLPRDGKKALT 564
Query: 536 QEACKMVKLARAAMGNKNSSRR--------QGPRRKFRKSDPLKSF 573
V L R G KN RR + K RK +PL++F
Sbjct: 565 ASEVGFVPLRRKD-GKKNDKRRTKYFAKGGKSALSKGRKVNPLRTF 609
>gi|303315147|ref|XP_003067581.1| ATP-dependent RNA helicase DBP9, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240107251|gb|EER25436.1| ATP-dependent RNA helicase DBP9, putative [Coccidioides posadasii
C735 delta SOWgp]
Length = 612
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 244/603 (40%), Positives = 355/603 (58%), Gaps = 63/603 (10%)
Query: 25 EKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPL 84
EK+FE L LD RL+ AL K+ KPTL+Q +IPL+L GKDV+ARAKTGSGKT AYLLP+
Sbjct: 22 EKTFETLHLDPRLLQALTKQKFTKPTLVQAEAIPLVLSGKDVLARAKTGSGKTAAYLLPI 81
Query: 85 LHRLFNE--SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMP 142
L + + ++P K + +AL+LVPTREL +QV + V++ C + + LT +
Sbjct: 82 LQSILQKKIANPTQK-SISALILVPTRELAEQVQNAVVSFSSFCGKDI--RSANLTQKVS 138
Query: 143 ASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 202
+ RA LA PDI+I+TP + + S S +D L LV+DEADL+LSYGYE D+
Sbjct: 139 DAVQRAILADLPDIIISTPA---RAIINTNSSSLSLND-LTHLVIDEADLVLSYGYEQDM 194
Query: 203 KALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWI 262
+ L+ IPRG Q LLMSAT +S+VD LK L +P IL L E D + QF +
Sbjct: 195 QNLAKAIPRGVQTLLMSATLTSEVDALKGLFCRSPVILKLEEAEDEG-----AGIAQFAV 249
Query: 263 SCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 322
C+E +K L + KL+LV+ K +IF ID ++RLKLFLE+FGIKS +LN+ELP NSR
Sbjct: 250 KCAEDEKFLLTYVIFKLQLVKGKCIIFVGDIDRSYRLKLFLEQFGIKSCVLNSELPVNSR 309
Query: 323 LHILEEFNAGLFDYLIATDD-----------TQTKEKDQSDEGGHVDSRK---------- 361
+H+++EFN G++D +IA DD ++T E+ + G + K
Sbjct: 310 IHVVQEFNKGVYDIIIAADDQEVIGEIPKKGSKTPEQSNGENGDEPEEEKGFSDEDEVEP 369
Query: 362 --SKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSL 419
SKK K+ + ++G+ RGIDF++V V+NF++P A Y HRIGRTGRA TG ++SL
Sbjct: 370 PPSKKRKKSTKEKDYGISRGIDFQDVACVLNFDLPTTAKSYTHRIGRTGRAGKTGMALSL 429
Query: 420 VSPDEMKIFEEIKSF--VGDDENEDSNIIAPFPLLAQNA---------VESLRYRAEDVA 468
+ P E+ + SF +DE + II L + +++ RYR D
Sbjct: 430 IVPSELYGRHKPTSFPTTKNDEAVLAKIIKRQAKLGREVKPYNFDTKQIDAFRYRMTDAL 489
Query: 469 KSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPD 528
++VT++AV+E+R ++++ E+LNSEKLK HFE NP++L L+HD +L +HL+ VP+
Sbjct: 490 RAVTRVAVQEARTKEIKQELLNSEKLKRHFEENPEELRQLRHDGELRPTRVQAHLKHVPE 549
Query: 529 YLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFR---------------KSDPLKSF 573
YL+ AK + + + N +R + R + R K+DPLK+F
Sbjct: 550 YLMPAKGKAGLTSGDIGFVGLRKTNENRIRKARDRNRMRGKGGRKGGRGGGRKADPLKTF 609
Query: 574 SAE 576
++
Sbjct: 610 KSK 612
>gi|255070509|ref|XP_002507336.1| helicase [Micromonas sp. RCC299]
gi|226522611|gb|ACO68594.1| helicase [Micromonas sp. RCC299]
Length = 605
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 223/537 (41%), Positives = 331/537 (61%), Gaps = 24/537 (4%)
Query: 19 EAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTF 78
E + ++ LGLD R++ AL +K PT +Q +IPL+L GKDVV RA TGSGKT
Sbjct: 9 ECPQADHSTWASLGLDRRILKALKRKQYNAPTAVQAQAIPLVLSGKDVVVRAHTGSGKTA 68
Query: 79 AYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLT 138
AYLLP+ H + + + P A+VLVPTREL QV E ++ LC+ L+ +L
Sbjct: 69 AYLLPVAHIVMQNHAHGALPNPRAIVLVPTRELANQVTKEASSI--LCQCAPTLRAGELP 126
Query: 139 SSMPASDLRAALAG-PPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYG 197
+S A ++ AG PP+I++ TP + +C+ G + + L +LVLDEAD+LLS+G
Sbjct: 127 ASGCAPEILREFAGAPPEILVGTPARVVECIRCGFFPPDALNSGLDLLVLDEADMLLSFG 186
Query: 198 YEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL----------PEVGD 247
Y D+K ++A + RGCQ +L+SAT++ ++ ++ L+LHNP L L E
Sbjct: 187 YNHDIKCIAAEVQRGCQSILLSATTNEELTGMQSLVLHNPVQLDLGSLNRNRCGQTETNA 246
Query: 248 VKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFG 307
V+ P+ + + I DKLLY + L +L L +KK L+F + D A RL+LFL KF
Sbjct: 247 VQPVQSPR-ISHYIIKLHTDDKLLYCMALFRLGLCEKKTLVFVSHSDAAIRLRLFLAKFS 305
Query: 308 IKSAILNAELPQNSRLHILEEFNAGLFDYLIAT-DDTQTKEKDQSD------EGGHVDSR 360
I L+ ELP NSR HIL+E+N G++D +IA DD + K +S+ +G H+++
Sbjct: 306 ISCCALHHELPYNSRAHILQEYNRGVYDCMIAVADDISARTKKESEARDLMLDGKHLNAS 365
Query: 361 KSKKHPKAKLDS--EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVS 418
+ K + D+ +FGVVRGIDFK V TVINF++P +A+ YVH+IGRTGR G++++
Sbjct: 366 EEVKRFGRQKDAHKDFGVVRGIDFKQVRTVINFDVPSDASAYVHQIGRTGRGGEHGSAIT 425
Query: 419 LVSPDEMKIFEEIKSFVGD-DENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVR 477
VS E++ E I+ + + EN S + PF LA VE+LRYRAEDV+++V + +VR
Sbjct: 426 FVSLSEVRKIEAIQQDLKEYGENGSSLVFKPFGKLAIEDVEALRYRAEDVSRTVGRASVR 485
Query: 478 ESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAK 534
++R +++R E+LNS++L AHF+ NP +L LLKHD L+K+ HL +P+YL K
Sbjct: 486 DARVREIRTELLNSDRLAAHFDENPDELILLKHDFRLAKQRALPHLNHLPNYLRGGK 542
>gi|442570098|sp|Q1DWF4.2|DBP9_COCIM RecName: Full=ATP-dependent RNA helicase DBP9
gi|392868756|gb|EAS34544.2| ATP-dependent RNA helicase DBP9 [Coccidioides immitis RS]
Length = 612
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 244/603 (40%), Positives = 355/603 (58%), Gaps = 63/603 (10%)
Query: 25 EKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPL 84
EK+FE L LD RL+ AL K+ KPTL+Q +IPL+L GKDV+ARAKTGSGKT AYLLP+
Sbjct: 22 EKTFETLHLDPRLLQALTKQKFTKPTLVQAEAIPLVLSGKDVLARAKTGSGKTAAYLLPI 81
Query: 85 LHRLFNE--SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMP 142
L + + ++P K + +AL+LVPTREL +QV + V++ C + + LT +
Sbjct: 82 LQSILQKKIANPTQK-SISALILVPTRELAEQVQNAVVSFSSFCGKDI--RSANLTQKVS 138
Query: 143 ASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 202
+ RA LA PDI+I+TP + + S S +D L LV+DEADL+LSYGYE D+
Sbjct: 139 DAVQRAILADLPDIIISTPA---RAIINTNSSSLSLND-LTHLVIDEADLVLSYGYEQDM 194
Query: 203 KALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWI 262
+ L+ IPRG Q LLMSAT +S+VD LK L +P IL L E D + QF +
Sbjct: 195 QNLAKAIPRGVQTLLMSATLTSEVDALKGLFCRSPVILKLEEAEDEG-----AGIAQFAV 249
Query: 263 SCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 322
C+E +K L + KL+LV+ K +IF ID ++RLKLFLE+FGIKS +LN+ELP NSR
Sbjct: 250 KCAEDEKFLLTYVIFKLQLVKGKCIIFVGDIDRSYRLKLFLEQFGIKSCVLNSELPVNSR 309
Query: 323 LHILEEFNAGLFDYLIATDD-----------TQTKEKDQSDEGGHVDSRK---------- 361
+H+++EFN G++D +IA DD ++T E+ + G + K
Sbjct: 310 IHVVQEFNKGVYDIIIAADDQEVIGEIPKKGSKTPEQSNGENGDEPEEEKGFSDEDEVEP 369
Query: 362 --SKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSL 419
SKK K+ + ++G+ RGIDF++V V+NF++P A Y HRIGRTGRA TG ++SL
Sbjct: 370 PPSKKRKKSTKEKDYGISRGIDFQDVACVLNFDLPTTAKSYTHRIGRTGRAGKTGMALSL 429
Query: 420 VSPDEMKIFEEIKSF--VGDDENEDSNIIAPFPLLAQNA---------VESLRYRAEDVA 468
+ P E+ + SF +DE + II L + +++ RYR D
Sbjct: 430 IVPSELYGRHKPTSFPTAKNDEAVLAKIIKRQAKLGREVKPYNFDTKQIDAFRYRMTDAL 489
Query: 469 KSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPD 528
++VT++AV+E+R ++++ E+LNSEKLK HFE NP++L L+HD +L +HL+ VP+
Sbjct: 490 RAVTRVAVQEARTKEIKQELLNSEKLKRHFEENPEELRQLRHDGELRPTRVQAHLKHVPE 549
Query: 529 YLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFR---------------KSDPLKSF 573
YL+ AK + + + N +R + R + R K+DPLK+F
Sbjct: 550 YLMPAKGKAGLTSGDIGFVGLRKTNENRIRKARDRNRMRGKGGRKGGRGGGRKADPLKTF 609
Query: 574 SAE 576
++
Sbjct: 610 KSK 612
>gi|322711278|gb|EFZ02852.1| ATP-dependent RNA helicase dbp9 [Metarhizium anisopliae ARSEF 23]
Length = 612
Score = 407 bits (1045), Expect = e-110, Method: Compositional matrix adjust.
Identities = 240/606 (39%), Positives = 363/606 (59%), Gaps = 49/606 (8%)
Query: 8 PSKEVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVV 67
P E ++ + E+ ++E +F +LGLD RLV A+ ++ KPTL+Q+ +IPL L GKDV+
Sbjct: 13 PEPENQKRTKSESAGDQELTFADLGLDPRLVQAVAEQTFLKPTLVQRKAIPLALNGKDVL 72
Query: 68 ARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCK 127
++KTGSGKT AY+LP+L + + + ++ A +AL+LVPTREL QV+ + C
Sbjct: 73 CKSKTGSGKTAAYVLPVLTAILKKKTAETVAATSALILVPTRELADQVFKVIEQFSSFCA 132
Query: 128 GQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVL 187
V + V+LT + + R+ L+ PDIVI+TP + + QS D L LVL
Sbjct: 133 KDV--RAVKLTDKLSDAVQRSLLSTNPDIVISTPARAWYNVKSN--QSSLSLDKLTHLVL 188
Query: 188 DEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHN--PYILTLPEV 245
DEADLLLSYGY++DL+ LS IP+G Q ++MSAT +++++ LKK+ + P +L L E
Sbjct: 189 DEADLLLSYGYDEDLENLSWSIPKGIQTIMMSATLTAEIESLKKIFYRDNAPTLLDLEE- 247
Query: 246 GDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEK 305
D + E + Q C+E +K L + KL+LV+ K +IF ID +RLKLF E+
Sbjct: 248 PDAEGE----GITQLVTKCAEDEKFLLAYIIFKLQLVKGKCIIFVGDIDRCYRLKLFFEQ 303
Query: 306 FGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQ---------SDEGGH 356
FGI+S ILN+ELP NSR+H++EEFN ++D +IA+D+ + ++ ++
Sbjct: 304 FGIRSCILNSELPVNSRIHVVEEFNRNVYDIIIASDEKEVLGNEEKADEEENNEDEQEED 363
Query: 357 VDSRKSKKHPK-----AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAY 411
D+ K ++ PK +K D E+GV RGIDFKNV VINF++P +A+ Y HRIGRT RA
Sbjct: 364 SDAEKEERRPKKKRKASKRDKEYGVSRGIDFKNVAAVINFDLPTSASSYTHRIGRTARAG 423
Query: 412 NTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNI-------------IAPFPLLAQNAVE 458
G ++S V P E + + + + + EN++ + I P+ + VE
Sbjct: 424 KAGMALSFVIPKE-QFRKHMPTSIQSAENDEKVLARITRQQAKKGKEIKPYNFNTKQ-VE 481
Query: 459 SLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKP 518
+ RYR D ++VTK+AVRE+R ++LR E++ SEKLK +FE NP +++ L+HD +L
Sbjct: 482 AFRYRMNDALRAVTKVAVREARTRELRQELMKSEKLKRYFEENPSEINHLRHDGELRTAR 541
Query: 519 PASHLRDVPDYLL--DAK---TQEACKMVKLAR--AAMGNK--NSSRRQGPRRKFRKSDP 569
+HL+ +PDYLL D K T+ V L + + G++ ++R G R RK DP
Sbjct: 542 QQAHLKHIPDYLLPKDGKKDLTENDIGFVPLRKPGSLRGHRKGKGTKRGGFRVGARKGDP 601
Query: 570 LKSFSA 575
LK+F A
Sbjct: 602 LKTFKA 607
>gi|51467996|ref|NP_001003876.1| probable ATP-dependent RNA helicase DDX56 [Danio rerio]
gi|49619091|gb|AAT68130.1| DEAD/H box 56 RNA helicase/noh61 [Danio rerio]
Length = 557
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 234/562 (41%), Positives = 338/562 (60%), Gaps = 13/562 (2%)
Query: 23 EEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLL 82
E+ F E+GLD RL+ AL G +PTLIQ+ +IPL LEGKD++ARA+TGSGKT AY +
Sbjct: 3 EDSVRFHEMGLDDRLLKALADLGWSQPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAV 62
Query: 83 PLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMP 142
PL+ R+ + A A+VLVPT+EL QQV + + L C V +V ++
Sbjct: 63 PLIQRVLTSKQTVREQAVRAVVLVPTKELGQQVQTMIRQLTAYCSRDV--RVADISGKAD 120
Query: 143 ASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 202
S + L PDIV++TP + ++ LQ S SL++LV+DEADLL S+G+E DL
Sbjct: 121 LSAQKPILMEKPDIVVSTPSRIQAHINAQNLQLHS---SLEMLVIDEADLLFSFGFEADL 177
Query: 203 KALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWI 262
K L +P+ Q LMSAT + DV LK+L+LHNP L L + + D +QQF I
Sbjct: 178 KNLLCHLPKIYQAFLMSATLNDDVQALKELVLHNPVTLKL-QGSQLPDS---SQLQQFSI 233
Query: 263 SCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 322
C E DK L I T+LKL L+Q K L+F + +D ++RLKLFLE+F I + +LN+ELP +SR
Sbjct: 234 KCEEEDKFLLIYTMLKLGLIQGKTLLFVSDVDRSYRLKLFLEQFSIPACVLNSELPVHSR 293
Query: 323 LHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDF 382
HI+ +FN G ++Y+IA+D+ + S + +K K K D E+GV RGIDF
Sbjct: 294 CHIISQFNQGFYNYIIASDEQGLESPAGSSQKTQEKGKKKKGTGKKGKDKEYGVSRGIDF 353
Query: 383 KNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENED 442
NV VINF+ P + Y+HR+GRT RA N G ++S +S E+ + E+++ + D N
Sbjct: 354 HNVSNVINFDFPTSVESYIHRVGRTARADNPGTALSFISHAELSMLSEVENALTGDSN-- 411
Query: 443 SNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNP 502
+ ++ P+ + +E RYR D +SVTK AV+E+R ++++ E+LNSEKLK +FE NP
Sbjct: 412 NCVLKPYEFRMEE-IEGFRYRCRDGMRSVTKQAVKEARLKEIKQELLNSEKLKTYFEDNP 470
Query: 503 KDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRR 562
+DL LL+HDKDL H+++VP+YL+ + + R K+S +
Sbjct: 471 RDLQLLRHDKDLHPAIIKPHMKNVPEYLIPTALKSLVNPLNQRRKRKKVKSSGVMLSSFK 530
Query: 563 K-FRKSDPLKSFSAEPTKRAGK 583
K +R +PLKSF +R K
Sbjct: 531 KNYRGRNPLKSFRYAKKRRGEK 552
>gi|145341038|ref|XP_001415623.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144575846|gb|ABO93915.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 583
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 217/517 (41%), Positives = 322/517 (62%), Gaps = 22/517 (4%)
Query: 46 IQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVL 105
+ PT Q+A +P+ L G+DV ARA TGSGKT AYL+P+L ++ +S + P +VL
Sbjct: 6 LDAPTATQRAVVPVALRGRDVCARAPTGSGKTMAYLVPMLDKMCARASATAS-GPRGIVL 64
Query: 106 VPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMP 165
PTREL Q A + C ++ + + S+ + LR PPD+++ATP +
Sbjct: 65 TPTRELAHQTRRACAAAMRTCAPGMRAGELPVASAG-TNVLRETAGSPPDVLVATPTRVA 123
Query: 166 KCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSD 225
+C G + D L+++VLDEADLLLS+GY DD+K + + RG Q +++SAT S +
Sbjct: 124 ECARGGYFPPGALGDGLEMVVLDEADLLLSFGYVDDIKCVMKAVKRGTQVMMLSATMSKE 183
Query: 226 VDKLKKLILHNPYILTL-------PEVGDVKDEVIPK---NVQQFWISCSE-RDKLLYIL 274
+++L+ +I H P + + E G+ K K +++ + + + D+LLY++
Sbjct: 184 IEELRDVIAHKPTTIDVDDEEDVDAEKGEAKAGEGAKPGPDIKHYSLHIPKAHDRLLYVM 243
Query: 275 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 334
LL+L L +KKAL+F ++ D A RL+LFL KFG+ + L+ ELP NSR HIL+EFN G++
Sbjct: 244 ALLRLGLCKKKALVFVSSADAAVRLRLFLHKFGVPTCALHGELPANSRTHILQEFNRGVY 303
Query: 335 DYLIATDDTQ-----TKEKDQSDEG-GHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTV 388
D+++A D T+E D +E +R+SKK + + D EFGVVRGIDF+ V+TV
Sbjct: 304 DFMVAAADDANMAEPTEEADAVEEQEDKAPTRESKKKKRDRRDKEFGVVRGIDFQAVNTV 363
Query: 389 INFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD---DENEDSNI 445
INFE+P AA YVHR+GRTGRA N+G +++LV+P E + F I+S + D + +
Sbjct: 364 INFEVPTTAAAYVHRVGRTGRAGNSGTAITLVAPSEEQSFAAIQSKLASAVGDAVAATQV 423
Query: 446 IAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDL 505
+ PF L + AV++LRYRAED A++V K AV+E+R ++LR E+LNSE+L AHFE N +DL
Sbjct: 424 MQPFDRLPKEAVDALRYRAEDAARAVGKTAVKEARVRELRQELLNSERLAAHFEDNAEDL 483
Query: 506 DLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMV 542
LLKHD L+K P A HL +P YL K++ V
Sbjct: 484 ALLKHDTSLAKHPDAKHLSHLPGYLRGGKSRRGAARV 520
>gi|121716290|ref|XP_001275754.1| ATP dependent RNA helicase (Dbp9), putative [Aspergillus clavatus
NRRL 1]
gi|134034082|sp|A1C7F7.1|DBP9_ASPCL RecName: Full=ATP-dependent RNA helicase dbp9
gi|119403911|gb|EAW14328.1| ATP dependent RNA helicase (Dbp9), putative [Aspergillus clavatus
NRRL 1]
Length = 621
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 239/625 (38%), Positives = 356/625 (56%), Gaps = 68/625 (10%)
Query: 4 SKEIPSKEVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEG 63
+ ++PS EV AE +EA+ + FE L LD RL AL K+ KPT +Q +IPL LEG
Sbjct: 7 ANDVPSAEV--AEGKEAKDADNTDFENLNLDPRLRQALIKEQFTKPTPVQSKAIPLALEG 64
Query: 64 KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKL-APAALVLVPTRELCQQVYSEVMAL 122
KD++ARAKTGSGKT AY+LP+L + + + L A L+LVPTREL +QV S +
Sbjct: 65 KDILARAKTGSGKTAAYVLPILQTILQKKAADPSLKATTGLILVPTRELAEQVQSVITKF 124
Query: 123 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSL 182
C V + V LT + + R LA PD++++TP + L + L D+L
Sbjct: 125 TAFCGKDV--RSVNLTQKVSDAVQRTMLADYPDLIVSTPARVIANLGSSALAL----DNL 178
Query: 183 KILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL 242
LV+DEADL+LSYGY++D+ AL+ IPRG Q LMSAT +S+VD LK L NP +L L
Sbjct: 179 THLVIDEADLVLSYGYDEDINALAKAIPRGVQTFLMSATLTSEVDTLKGLFCRNPVVLKL 238
Query: 243 PEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLF 302
D +DE + QF + C+E +K L + KL+L++ K +IF ID +R+KLF
Sbjct: 239 E---DKEDE--GAGISQFVVRCAEDEKFLLTYVIFKLQLIKGKVIIFVGDIDRCYRVKLF 293
Query: 303 LEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD----------------TQTK 346
LE+FGIKS +LN+ELP NSR+H+++EFN G++D +IA D+ T
Sbjct: 294 LEQFGIKSCVLNSELPINSRIHVVQEFNKGVYDIIIAADEQEVMGARTTFKKSKEITDGD 353
Query: 347 EKDQSDEGGHV--------DSRKSKKHPKAKLDS-----EFGVVRGIDFKNVHTVINFEM 393
E++ D+ G D+ K HP+ + + ++G+ RGIDF+NV V+NF++
Sbjct: 354 EEETRDKMGSSEDEDNEPEDNDKKSAHPEKRRKTSGKGKDYGISRGIDFQNVACVLNFDL 413
Query: 394 PQNAAGYVHRIGRTGRAYNTGASVSLVSP-DEM-----------KIFEEIKSFVGDDENE 441
P + Y HRIGRTGRA G ++S V P DE K E + + + + +
Sbjct: 414 PTTSKSYTHRIGRTGRAGKAGMALSFVVPADEFGKHKPTSFPTAKYDESVLAKIVKRQAK 473
Query: 442 DSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVN 501
+ + P+ + V++ RYR D +SVT++A++E+RA+++R E++ SEKLK HFE N
Sbjct: 474 LDHEVKPYHFEMKQ-VDAFRYRMTDALRSVTRLAIQEARAREIRQELVKSEKLKRHFEEN 532
Query: 502 PKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPR 561
P++L L+HD +L HL+ +PDYL+ +K ++ + ++ +R + R
Sbjct: 533 PEELKQLRHDGELRAARIQPHLKHIPDYLMPSKGRKGISSENVGYVGFTKQSDNRIRKAR 592
Query: 562 RK------------FRKSDPLKSFS 574
K RK DPLK+F+
Sbjct: 593 EKNRGKGKGRKPSGVRKVDPLKTFN 617
>gi|378733411|gb|EHY59870.1| ATP-dependent RNA helicase dbp9 [Exophiala dermatitidis NIH/UT8656]
Length = 601
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 236/600 (39%), Positives = 358/600 (59%), Gaps = 60/600 (10%)
Query: 22 AEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYL 81
A E SF+ GLD RL+ A+ K PT +Q IPL LEGKD++A++KTGSGKT AY+
Sbjct: 20 APSEPSFDSFGLDPRLMQAVAKANYSAPTPVQAKVIPLALEGKDILAKSKTGSGKTAAYI 79
Query: 82 LPLLHRLFN--ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTS 139
LP+L + ++SPK+K+ + L+LVPTREL QV ++L C VQ + LT
Sbjct: 80 LPILQSILRRKKTSPKNKVI-STLILVPTRELADQVQKAFVSLSAFCTKDVQ--SLNLTQ 136
Query: 140 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE 199
+ + L+A L PDI+++TPG + + L++G + ++ S LV+DEAD++LSYGYE
Sbjct: 137 RLSDAVLQAVLQDSPDIIVSTPGRVTQYLNSGRISLENISH----LVIDEADIVLSYGYE 192
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
DD+ +++++PRG Q L+SAT + +V++LK + + ++ + E + +E+ Q
Sbjct: 193 DDINTVASLLPRGVQTFLVSATLTPEVEELKGMFCRDATVVKIDEKEEKGEEIT-----Q 247
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+ + C E +K L I L KL LV+ K++IF +D ++RLKLFLE+FGIKS +LNAELP
Sbjct: 248 YVVRCGEDEKFLLIYVLFKLRLVKGKSIIFVQDVDRSYRLKLFLEQFGIKSCVLNAELPV 307
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQT--------------KEKDQSDEGGHVDSRKSKKH 365
NSRLH+++EFN GL+D LIA DD + +E + SDE + +KK
Sbjct: 308 NSRLHVVQEFNKGLYDILIAADDQEVLGGIVRRPKTRAHDQENEMSDEDDGTEEHVAKKS 367
Query: 366 PKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSP--- 422
+ + ++GV RGIDF+NV VINF++PQ + Y HRIGRT RA G ++S V P
Sbjct: 368 RISNNEKDYGVSRGIDFQNVACVINFDLPQTSKSYTHRIGRTARAGKAGMALSFVIPKDR 427
Query: 423 -------------DEMKIFEEIKSFVGDDENEDSNIIAPFPL-LAQNAVESLRYRAEDVA 468
++ ++ E+I + NE + P+ +AQ V++ RYR D
Sbjct: 428 YGKHKATSIPSAKNDERVLEKIIARQAKKGNE----VKPYHFDMAQ--VDAFRYRMNDAL 481
Query: 469 KSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSK-KPPASHLRDVP 527
++VT+ AV E+RA++++ E++ SEKL+ HFE NP+DL L+HD + S SHL+ VP
Sbjct: 482 RAVTRAAVHEARAREIKQELIKSEKLRKHFEENPEDLRHLRHDGEHSAIVRHQSHLKHVP 541
Query: 528 DYLLDAKTQEACKMVKLARAAM------GNKNSSRRQGPRR-KFR-KSDPLKSFSAEPTK 579
DYL+ + ++ + + G K ++++G R+ K R K DPLKSFSA K
Sbjct: 542 DYLMPPQGRKGVSAEDIGFVGLRKLDADGKKKDNKKRGGRKGKPRGKVDPLKSFSARERK 601
>gi|358382914|gb|EHK20584.1| hypothetical protein TRIVIDRAFT_90268 [Trichoderma virens Gv29-8]
Length = 616
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 244/583 (41%), Positives = 351/583 (60%), Gaps = 49/583 (8%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F +LGLD RLV A+ ++ KPTL+Q+ +IPL L+GKDV+ +AKTGSGKT AY+LP+L
Sbjct: 43 FADLGLDARLVQAVAQQKFLKPTLVQRKAIPLALDGKDVLCKAKTGSGKTAAYVLPVLAG 102
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+ + S S A AL+LVPTREL QV+ + C V + V+LT + + R
Sbjct: 103 ILKKKSVDSTAATMALILVPTRELADQVFKSIELFSAFCAKDV--RAVKLTDKLTDAVQR 160
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALS 206
+ L+ PDIVI+TP + S + S D L LVLDEADLLLSYGY +DL++LS
Sbjct: 161 SLLSTCPDIVISTPA---RAWHNVNGNSSALSLDKLSYLVLDEADLLLSYGYSEDLESLS 217
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHN--PYILTLPEVGDVKDEVIPKNVQQFWISC 264
IP+G Q ++MSAT +++VD LKK+ + P +L L E D + E V Q C
Sbjct: 218 WSIPKGIQTIMMSATLTTEVDSLKKIFYRDQQPTLLDLEE-PDAEGE----GVTQLVTKC 272
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
E +K L I + KL+LV+ K +IF ID +RLKL+ E+FGI+S ILN+ELP NSR+H
Sbjct: 273 GEDEKFLLIYVIFKLQLVKGKCIIFVADIDRCYRLKLYFEQFGIRSCILNSELPVNSRIH 332
Query: 325 ILEEFNAGLFDYLIATDDTQT----------KEKDQSDEGGHVDSRKSKKHPKAKLDSEF 374
++EEFN ++D +IA+D+ + +E++++D +SR KK AK D E+
Sbjct: 333 VVEEFNRNVYDIIIASDEKEVLGNEEKAEEEQEEEENDGESKQESRPKKKRKAAKGDVEY 392
Query: 375 GVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 434
GV RGIDFKNV VINF++P +A+ Y HRIGRT RA TG ++S V P ++ + I +
Sbjct: 393 GVSRGIDFKNVAAVINFDLPTSASSYTHRIGRTARAGRTGMALSFVVPKDL-YRKHIHTS 451
Query: 435 VGDDENEDSNI-------------IAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRA 481
+ EN++ + I P+ ++ V++ RYR D ++VTK+A+RE+R
Sbjct: 452 IASSENDEKILARITKQQAKKGKEIKPYN-FNKDQVDAFRYRMNDALRAVTKVAIREART 510
Query: 482 QDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKM 541
++LR E+L SEKLK +FE NP +++ L+HD +L +HL+ VPDYLL + ++A
Sbjct: 511 RELRQELLKSEKLKRYFEENPSEMNHLRHDGELRTARQQAHLKHVPDYLLPKEGRQALTA 570
Query: 542 VKLARAAMGNKNSSRRQGPRRK---------FRKSDPLKSFSA 575
+ + K RR G +RK RK DPLK+F A
Sbjct: 571 GDIGFVPL--KKFDRRAGTKRKGGKRSAKGGVRKGDPLKTFKA 611
>gi|169774379|ref|XP_001821657.1| ATP-dependent RNA helicase dbp9 [Aspergillus oryzae RIB40]
gi|91206553|sp|Q2UFL0.1|DBP9_ASPOR RecName: Full=ATP-dependent RNA helicase dbp9
gi|83769520|dbj|BAE59655.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391867816|gb|EIT77056.1| RNA helicase [Aspergillus oryzae 3.042]
Length = 605
Score = 404 bits (1037), Expect = e-109, Method: Compositional matrix adjust.
Identities = 230/585 (39%), Positives = 342/585 (58%), Gaps = 50/585 (8%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
FE L LD RL AL K+ KPTL+Q +IPL LEGKD++ARAKTGSGKT AY+LP+L
Sbjct: 29 FESLNLDPRLRQALIKEKFTKPTLVQAKAIPLALEGKDILARAKTGSGKTAAYVLPILQT 88
Query: 88 LFNESSPKSKL-APAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
+ + + A L+LVPTREL +QV + V C V + V LT + +
Sbjct: 89 ILQKKATDPSFKATTGLILVPTRELAEQVQNVVTTFAAFCGKDV--RSVNLTQKVSDAVQ 146
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
R LA PD+V++TP + L + L ++L LV+DEADL+LSYGYE+D+ AL+
Sbjct: 147 RTMLADYPDLVVSTPARVVTNLGSSALSL----ENLTHLVIDEADLVLSYGYEEDINALA 202
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
IPRG Q LMSAT + +VD LK L +P L L + D V QF + C+E
Sbjct: 203 KAIPRGVQTFLMSATLTDEVDTLKGLFCRSPVTLKLEDKDDQG-----AGVSQFVVRCAE 257
Query: 267 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
+K L + KL+L++ K +IF + +D +R+KLFLE+FGIKS +LN+ELP NSR+H++
Sbjct: 258 DEKFLLTYVIFKLQLIKGKVIIFVDDVDRCYRVKLFLEQFGIKSCVLNSELPINSRIHVV 317
Query: 327 EEFNAGLFDYLIATDDTQ------TKEKDQSDEGGHVDSR------KSKKHPKAKLDSEF 374
+EFN G++D LIA D+ + +K+ +++E G D KSK+ + + ++
Sbjct: 318 QEFNKGVYDILIAADEQEVIGARKSKKSKETEEAGSSDEDEGEPEDKSKRRKVSGKEKDY 377
Query: 375 GVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM--------- 425
G+ RGIDF+NV V+NF++P + Y HRIGRTGRA TG ++S V P +
Sbjct: 378 GISRGIDFQNVACVLNFDLPSTSKSYTHRIGRTGRAGKTGMALSFVIPKDQHGKHRPTST 437
Query: 426 ---KIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQ 482
K E + + + + + + + P+ VE+ RYR D ++VT++AV+E+RA+
Sbjct: 438 ATSKHDESVLAKIVKRQGKLGHEVKPYHF-EMKQVEAFRYRMTDALRAVTRLAVQEARAR 496
Query: 483 DLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMV 542
++R E++ SEKLK HFE NP++L L+HD +L HL+ +P+YL+ AK ++
Sbjct: 497 EIRQELIKSEKLKRHFEENPEELRQLRHDDELRSARVQPHLKHIPEYLMPAKGKKGLSSG 556
Query: 543 KLARAAMGNKNS---------SRRQGPRRKF----RKSDPLKSFS 574
+ + +N +R +G RKF +K DPLK+F+
Sbjct: 557 DVGFVSFRKQNENRIRKAREKNRGKGNGRKFAGVKKKVDPLKTFN 601
>gi|327303856|ref|XP_003236620.1| ATP-dependent RNA helicase DBP9 [Trichophyton rubrum CBS 118892]
gi|326461962|gb|EGD87415.1| ATP-dependent RNA helicase DBP9 [Trichophyton rubrum CBS 118892]
Length = 613
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 241/603 (39%), Positives = 345/603 (57%), Gaps = 65/603 (10%)
Query: 26 KSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLL 85
+ FE+ GLD RL+ AL + KPTL+Q +IPL L GKD++ARAKTGSGKT AYL+P++
Sbjct: 24 RHFEDFGLDPRLLQALTSQKFSKPTLVQAEAIPLALSGKDILARAKTGSGKTAAYLIPII 83
Query: 86 HRLFNESS--PKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPA 143
++ + + P K + + L+LVPTREL QQV+ V A E C + + LT +
Sbjct: 84 QKILQKKAVDPAHK-SISTLILVPTRELAQQVHKTVTAFSEFCSKDI--RSGNLTQKVSD 140
Query: 144 SDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLK 203
+ RA LA PDIVI+TP ++ L D++ +V+DEADL+LSYGYE D++
Sbjct: 141 AVQRALLADLPDIVISTPARAIVNVNNSALAL----DTISQVVIDEADLVLSYGYEQDMQ 196
Query: 204 ALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWIS 263
L+ IPRG Q LMSAT +S+VD LK L +P IL L E D + QF +
Sbjct: 197 NLAKAIPRGVQTFLMSATLTSEVDTLKGLFCRSPAILKLEEAEDEG-----AGISQFAVK 251
Query: 264 CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
C+E DK L + KL+LV+ K +IF +D +RLKLFLE+FGIKS ILN+ELP NSR+
Sbjct: 252 CAEDDKFLLTYVIFKLQLVKGKCIIFVGDVDRCYRLKLFLEQFGIKSCILNSELPANSRI 311
Query: 324 HILEEFNAGLFDYLIATDDTQT-------KEKDQSD---EGGHVDSRKSKKHPK------ 367
H +EEFN G++D +IA DD + KE +S+ + K P+
Sbjct: 312 HAVEEFNKGVYDIIIAADDQEVIGKIESKKETSESEVPITDAATEENKDLSEPEEVEEKL 371
Query: 368 ----------AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASV 417
++ + ++G+ RGIDF++V V+NF++P A Y HRIGRTGRA TG ++
Sbjct: 372 PPSNKKKRKKSEKEKDYGISRGIDFQDVACVLNFDLPTTAKSYTHRIGRTGRAGKTGMAL 431
Query: 418 SLVSPDEM------KIFEEIK---SFVGDDENEDSNI---IAPFPLLAQNAVESLRYRAE 465
S V P E+ IF K S + E + + + P+ + +E RYR
Sbjct: 432 SFVVPSELYGKHKPTIFPPAKNDESVLAKIEKRQAKMGREVKPYH-FDKKQIEVFRYRMT 490
Query: 466 DVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRD 525
D ++VT+IAV+E+RA+++R E++ SEKLK HFE NP++L L+HD++L S L++
Sbjct: 491 DALRAVTRIAVQEARAKEIRQELVKSEKLKRHFEENPQELRELRHDQELGSVRVQSQLKN 550
Query: 526 VPDYLLDAK-----TQEACKMV-------KLARAAMGNKNSSRRQGPRRKFRKSDPLKSF 573
VP+YL+ K T E V ++ +A N+ R R RK DPLKSF
Sbjct: 551 VPEYLMPTKGKSSLTSEDIGFVGLHKKENRIRQARQKNRARGRIAKKGRAGRKIDPLKSF 610
Query: 574 SAE 576
++
Sbjct: 611 KSK 613
>gi|296812221|ref|XP_002846448.1| ATP-dependent RNA helicase DBP9 [Arthroderma otae CBS 113480]
gi|238841704|gb|EEQ31366.1| ATP-dependent RNA helicase DBP9 [Arthroderma otae CBS 113480]
Length = 617
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 245/607 (40%), Positives = 348/607 (57%), Gaps = 69/607 (11%)
Query: 26 KSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLL 85
K FE+ GLD RL+ AL + KPTL+Q +IPL L+GKD++ARAKTGSGKT AYLLP+L
Sbjct: 24 KRFEDFGLDPRLLQALKLQKFSKPTLVQAEAIPLALDGKDILARAKTGSGKTAAYLLPIL 83
Query: 86 HRLFNE-SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
R+ + ++ + + + L+LVPTREL QQV+ V A E C + + LT + +
Sbjct: 84 QRILQKKAADPAHRSISTLILVPTRELAQQVHRTVTAFSEFCSKDI--RSGNLTQKVSDA 141
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
RA LA PDIVI+TP ++ L D++ +V+DEADL+LSYGYE D+++
Sbjct: 142 VQRALLADMPDIVISTPARAIVNVNNSAL----VLDNISQVVIDEADLVLSYGYEQDMQS 197
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264
L+ IP G Q LMSAT +S+VD LK L +P IL L E D + QF + C
Sbjct: 198 LAKAIPHGVQTFLMSATLTSEVDTLKGLFCRSPAILKLEEAEDEG-----AGISQFAVKC 252
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
+E +K L + KL+LV+ K +IF +D +RLKLFLE+FGIKS ILN+ELP NSR+H
Sbjct: 253 AEDEKFLLTYVIFKLQLVKGKCIIFVGDVDRCYRLKLFLEQFGIKSCILNSELPANSRIH 312
Query: 325 ILEEFNAGLFDYLIATDDTQT-------KEKDQSDEGGHVDSRKSK-------------- 363
++EFN G++D +IA DD + KE +S +G D+ +
Sbjct: 313 AVQEFNKGVYDIIIAADDQEVIGKVESKKETVESKDGPVEDTATEEAKEELSEPEEVEEK 372
Query: 364 --------KHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGA 415
K K+ + ++G+ RGIDF++V V+NF++P A Y HRIGRTGRA TG
Sbjct: 373 TVLSNKNKKRKKSGKEKDYGISRGIDFQDVACVLNFDLPTTAKSYTHRIGRTGRAGKTGM 432
Query: 416 SVSLVSPDEM------KIFEEIK---SFVGDDENEDSNI---IAPFPLLAQNAVESLRYR 463
++S V P ++ IF K S + E + + + P+ + +E RYR
Sbjct: 433 ALSFVVPSDLYGKHKPTIFPPAKNDESVLAKIEKRQAKMGREVKPYH-FDKKQIEVFRYR 491
Query: 464 AEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHL 523
D ++VT+IA++E+RA+++R E++ SEKLK HFE NP++L L+HD +L SHL
Sbjct: 492 MTDALRAVTRIAIQEARAKEIRQELVKSEKLKKHFEENPQELRQLRHDDELGSVRVQSHL 551
Query: 524 RDVPDYLLDAK-----TQEACKMVKLARAAMGNKNSSRRQGPRRK---------FRKSDP 569
+ VPDYL+ AK T E V L R + N+ RQ R + RK DP
Sbjct: 552 KHVPDYLMPAKGKSALTSEDIGFVGL-RKSKENRIRQARQKNRARGRVAKKGGAGRKIDP 610
Query: 570 LKSFSAE 576
LKSF ++
Sbjct: 611 LKSFKSK 617
>gi|346320186|gb|EGX89787.1| ATP-dependent RNA helicase DBP9 [Cordyceps militaris CM01]
Length = 604
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 244/609 (40%), Positives = 357/609 (58%), Gaps = 57/609 (9%)
Query: 10 KEVKQAEEEE----AEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKD 65
+E +A E+E AE ++ SF +L LD RLV A+ ++ +PTL+Q+ +IP+ L+G+D
Sbjct: 6 EETNEAAEKETAAPAETDKGFSFTDLALDARLVQAIAEQKFSQPTLVQRMAIPIALKGQD 65
Query: 66 VVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIEL 125
V+ +AKTGSGKT AY+LP+L + + S+ A AL+LVPTREL QV+ +
Sbjct: 66 VLCKAKTGSGKTAAYVLPVLAGILKRKTTDSEPATTALILVPTRELADQVFKAIEQFSAF 125
Query: 126 CKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKIL 185
C V + V+LT + + R+ LA PDIVI+TP ++ G + S S L L
Sbjct: 126 CSKDV--RAVKLTDKLSDAVQRSLLATLPDIVISTPARAWHNVN-GNSAALSLS-KLSHL 181
Query: 186 VLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEV 245
VLDEADLLLSYGY+ DL+ LS +P+G Q ++MSAT +S++D LKK+ + +PE+
Sbjct: 182 VLDEADLLLSYGYDSDLENLSWSLPKGIQTIMMSATLTSEIDSLKKIFYRD----NVPEL 237
Query: 246 GDVKDEVIPKN----VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKL 301
D+++ P N + Q + C E +K L + KL+LV+ K +IF ID +RLKL
Sbjct: 238 LDLEE---PDNEGEGITQLFTKCGEDEKFLLAYIIFKLKLVKGKCIIFVGDIDRCYRLKL 294
Query: 302 FLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ---------------TK 346
F E+FGI+S ILN+ELP NSR+H++EEFN ++D +IA+D+ + +
Sbjct: 295 FFEQFGIRSCILNSELPVNSRIHVVEEFNKNVYDIIIASDEKEILGSEDQAAEGEAEEGQ 354
Query: 347 EKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGR 406
E++ + + R KK K D E+GV RGIDFKNV VINF++P A+ Y HRIGR
Sbjct: 355 EEEAEEATETSEKRPKKKRKSTKQDLEYGVSRGIDFKNVAAVINFDLPTTASSYTHRIGR 414
Query: 407 TGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA--------------PFPLL 452
T RA G ++S V P + + + I + + E +D I+A P+
Sbjct: 415 TARAGKAGMALSFVVPKD-QYRKHIPTTIASAE-KDEKILARITKQQAKKGKEMKPYNFS 472
Query: 453 AQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDK 512
+ VE+ RYR D ++VTK+AVRE+R ++LR E+L SEKLK +FE NP ++ L+HD
Sbjct: 473 TEQ-VEAFRYRMNDALRAVTKVAVREARTRELRQELLKSEKLKRYFEENPTEMAHLRHDG 531
Query: 513 DLSKKPPASHLRDVPDYLLDAKTQEACKMVKLA----RAAMGNKNSSRR--QGPRRKFRK 566
+L +HL+ +P+YLL + +EA K+ R G S+R G R RK
Sbjct: 532 ELRTARQQAHLKHIPEYLLPKEGKEALTADKIGFVPLRKFGGKDRKSKRGKSGKRIGSRK 591
Query: 567 SDPLKSFSA 575
DPLK+FSA
Sbjct: 592 GDPLKTFSA 600
>gi|425768045|gb|EKV06591.1| ATP dependent RNA helicase (Dbp9), putative [Penicillium digitatum
Pd1]
gi|425769672|gb|EKV08158.1| ATP dependent RNA helicase (Dbp9), putative [Penicillium digitatum
PHI26]
Length = 616
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 241/622 (38%), Positives = 357/622 (57%), Gaps = 73/622 (11%)
Query: 4 SKEIPSKEVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEG 63
+ ++PS E AE++E + FE L LD RL AL K+ KPTL+Q +IPL LEG
Sbjct: 13 ANDVPSPEAAGAEDQELD------FEALNLDPRLRQALIKEKFTKPTLVQSKAIPLALEG 66
Query: 64 KDVVARAKTGSGKTFAYLLPLLHRLFNE--SSPKSKLAPAALVLVPTRELCQQVYSEVMA 121
KD++ARAKTGSGKT AY+LP+L + + + P SK A AL+LVPTREL +QV + +
Sbjct: 67 KDILARAKTGSGKTAAYVLPILQAILQQKIADPSSK-ATTALILVPTRELAEQVQKVITS 125
Query: 122 LIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS 181
C + + V LT + R+ LA PDI+++TP + ++ L D
Sbjct: 126 FASFCGKDI--RSVNLTQKVSDEVQRSMLADFPDIIVSTPTRVYSNVNNSALTL----DK 179
Query: 182 LKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILT 241
+ LV+DEADL+LSYGY++++ ALS IPRG Q LMSAT +S+VD LK L NP IL
Sbjct: 180 ITHLVIDEADLVLSYGYDEEINALSKAIPRGAQTFLMSATLTSEVDTLKDLYCRNPVILK 239
Query: 242 LPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKL 301
L E E V QF + C+E +K L + KL+L++ K +IF +D +R+KL
Sbjct: 240 LEE-----KEEKGAGVSQFVVRCTEDEKFLLTYVIFKLQLIKGKVIIFVADVDRCYRVKL 294
Query: 302 FLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ----TKEK--------- 348
FLE+FG+KS +LN+ELP NSR+H++EEFN G++D ++A D+ + TK K
Sbjct: 295 FLEQFGLKSCVLNSELPINSRIHVVEEFNKGVYDIIVAADEQEVLGVTKSKKSREVKEAD 354
Query: 349 -------DQSDEGGHVDSRKSKKHPKAK-------LDSEFGVVRGIDFKNVHTVINFEMP 394
S++ VD +K P+AK + ++ + RGIDF+NV V+NF++P
Sbjct: 355 EEAKEEIGSSEDEEAVDENGKEKKPEAKKRRKMTSKEKDYSIARGIDFQNVACVLNFDLP 414
Query: 395 QNAAGYVHRIGRTGRAYNTGASVSLVSPDE------------MKIFEEIKSFVGDDENED 442
++ Y HRIGRTGRA G ++S V P E K E + + + +++
Sbjct: 415 TSSKSYTHRIGRTGRAGKAGMALSFVIPTEQYGKHRPTSIPSTKHDEAMLAKIIKRQSKL 474
Query: 443 SNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNP 502
+ + P+ V++ RYR D +SVT++AV+E+R +++R E++ SEKLK HFE NP
Sbjct: 475 GHEVKPYH-FEMTQVDAFRYRMTDALRSVTRLAVQEARGREIRQELIKSEKLKRHFEENP 533
Query: 503 KDLDLLKHDKDLSKKPPASHLRDVPDYLLDAK-----TQEACKMVKLARAAMGNKNSSRR 557
+L L+HD +L +HL+ VPDYL+ AK ++E+ V ++ +N R+
Sbjct: 534 DELRQLRHDGELRAARVQAHLKHVPDYLMPAKGRKGLSKESVGFVGFTKS---KQNRIRK 590
Query: 558 QGPRRKFR-----KSDPLKSFS 574
R + R K DPLK+F+
Sbjct: 591 ARDRNRARGKSGGKVDPLKTFN 612
>gi|358397310|gb|EHK46685.1| hypothetical protein TRIATDRAFT_132616 [Trichoderma atroviride IMI
206040]
Length = 656
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 242/580 (41%), Positives = 346/580 (59%), Gaps = 44/580 (7%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F +LGLD RLV A+ ++G KPTL+Q+ +IPL L+GKDV+ +AKTGSGKT AY+LP+L
Sbjct: 84 FADLGLDARLVQAVAEQGFLKPTLVQRRAIPLALDGKDVLCKAKTGSGKTAAYVLPVLAG 143
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+ + S S A AL+LVPTREL QV+ + C V + V+LT + + R
Sbjct: 144 ILKKKSVDSTAATTALILVPTRELADQVFKAIELFSAFCAKDV--RAVKLTDKLTDAVQR 201
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
+ L+ PDIVI+TP ++ S D L LVLDEADLLLSYGY +DL++LS
Sbjct: 202 SLLSTCPDIVISTPARAWHNVNGN--SSALALDKLAYLVLDEADLLLSYGYSEDLESLSW 259
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLIL--HNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
IP+G Q +MSAT +++VD LKK+ P +L L E D + E V Q C
Sbjct: 260 SIPKGIQTTMMSATLTTEVDSLKKIFYREQQPELLDLEE-PDAEGE----GVTQLVTKCG 314
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
E +K L I + KL+LV+ K +IF ID +RLKL+ E+FGI+S ILN+ELP NSR+H+
Sbjct: 315 EDEKFLLIYVIFKLQLVKGKCIIFVADIDRCYRLKLYFEQFGIRSCILNSELPVNSRIHV 374
Query: 326 LEEFNAGLFDYLIATDDTQT----------KEKDQSDEGGHVDSRKSKKHPKAKLDSEFG 375
+EEFN ++D +IA+D+ + +E ++++ +SR KK AK D E+G
Sbjct: 375 VEEFNRNVYDIIIASDEKEVLGNEEKAEEEQEDEENEGESKEESRPKKKRKAAKGDVEYG 434
Query: 376 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM---KIFEEIK 432
V RGIDFKNV VINF++P +A+ Y HRIGRT RA TG ++S V P ++ I+ I
Sbjct: 435 VSRGIDFKNVAAVINFDLPTSASSYTHRIGRTARAGRTGMALSFVVPKDLYKKHIYTSIP 494
Query: 433 SFVGDD---------ENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQD 483
S D+ + + + P+ ++ V++ RYR D ++VTK+A+RE+R ++
Sbjct: 495 SAENDEKILARITKQQAKKGKELNPYD-FNKDQVDAFRYRMNDALRAVTKVAIREARTRE 553
Query: 484 LRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVK 543
LR E+L SEKLK +FE NP +++ L+HD +L +HL+ VPDYLL + ++
Sbjct: 554 LRQELLKSEKLKRYFEENPTEMNHLRHDGELRTARQQAHLKHVPDYLLPKEGRQGIAAGD 613
Query: 544 LARAAMGNKNSSRRQGPRRK--------FRKSDPLKSFSA 575
+ + K RR G +RK RK DPLK+F A
Sbjct: 614 IGFVPL--KKHDRRAGTKRKGGGKRKVGARKGDPLKTFKA 651
>gi|348504260|ref|XP_003439680.1| PREDICTED: probable ATP-dependent RNA helicase DDX56-like
[Oreochromis niloticus]
Length = 560
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 241/575 (41%), Positives = 342/575 (59%), Gaps = 31/575 (5%)
Query: 22 AEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYL 81
A E F E+GLD RL+ A+ G KPTLIQ+ IPL L+GKD++ARA+TGSGKT +Y
Sbjct: 2 AHERLQFHEMGLDDRLLKAVADLGWSKPTLIQEKVIPLALDGKDLLARARTGSGKTASYG 61
Query: 82 LPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSM 141
+P++ R+ + AL++VPT+EL QV + L C + +V ++S +
Sbjct: 62 IPVIQRILASKQNVREQDVRALIVVPTKELGHQVQIMMRQLTAYCSRDI--RVADISSKV 119
Query: 142 PASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDD 201
S R L PD+V+ TP + L+ Q+ SL++LV+DEADL+ S+G+E D
Sbjct: 120 DLSTQRPILMEKPDVVVGTPS---RVLAHLNAQNLVLRSSLEMLVVDEADLIFSFGFESD 176
Query: 202 LKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW 261
LK L +P Q LMSAT + DV LK+L+LHNP IL L + + D +QQ+
Sbjct: 177 LKNLLCHLPNIYQSFLMSATFNEDVQTLKELLLHNPVILKL-QGSQLPDS---SQLQQYS 232
Query: 262 ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 321
I C E DK L + TLLKL LV+ K L+F T+D +RLKLFLE+FGI + +LN+ELP S
Sbjct: 233 IKCEEEDKFLLVYTLLKLCLVKGKTLLFVGTVDRCYRLKLFLEQFGIPACVLNSELPVQS 292
Query: 322 RLHILEEFNAGLFDYLIATDD---TQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVR 378
R HI+ +FN G +DY+IATD+ T+T + Q+ + +K++K D E+GV R
Sbjct: 293 RCHIIAQFNQGFYDYIIATDEQSLTETAAEPQTT--AGKEKKKTQKKGGKAKDKEYGVSR 350
Query: 379 GIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI-KSFVGD 437
G+DF+NV VINF+ P+ Y+HR+GRT RA N G ++S VS E+ + E+ ++ GD
Sbjct: 351 GVDFQNVANVINFDFPKTVESYIHRVGRTARADNPGTALSFVSHTELGLLSEVEEALTGD 410
Query: 438 DENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAH 497
+ N + P+ + +E RYR D +SVTK AV+E+R ++++ E+LNSEKLK +
Sbjct: 411 ETNSP---LKPYEFKMEQ-IEGFRYRCRDAMRSVTKQAVKEARLKEIKQELLNSEKLKTY 466
Query: 498 FEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMV--KLARAAMGNKNSS 555
FE NP+DL LL+HDKDL HL++VP+YL+ EA K V L K
Sbjct: 467 FEDNPRDLQLLRHDKDLHPAVVKPHLKNVPEYLIP----EALKGVVHPLTSRRRRRKEIQ 522
Query: 556 RRQGP-RRKFRKS----DPLKSFSAEPTK-RAGKG 584
R G + F+K+ +PLKSF K R GK
Sbjct: 523 RPGGVIKSSFKKNIQGKNPLKSFQYTGGKNRKGKA 557
>gi|407921724|gb|EKG14864.1| Helicase [Macrophomina phaseolina MS6]
Length = 640
Score = 400 bits (1028), Expect = e-108, Method: Compositional matrix adjust.
Identities = 255/661 (38%), Positives = 367/661 (55%), Gaps = 94/661 (14%)
Query: 1 MGKSK----EIPSKEVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQAS 56
MGK K ++P A +++ + SF+ LGLD RL+ + ++ PT +Q +
Sbjct: 1 MGKRKLNEHDVPEDAEVVAASTQSQDSAQPSFDNLGLDARLLQGIVRQRFATPTPVQAQA 60
Query: 57 IPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKS-KLAPAALVLVPTRELCQQV 115
IPL LEGKD++AR+KTGSGKT AY+LP+LH + + S +AL+LVPTREL QV
Sbjct: 61 IPLALEGKDILARSKTGSGKTAAYVLPILHSILKRKADSSFTQCTSALILVPTRELAGQV 120
Query: 116 YSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQS 175
V A C GQ ++V +T + RA LA PDIV+ATPG L+ G L
Sbjct: 121 TKTVEAFAAFC-GQ-DVRVANITMREDDAVQRARLADSPDIVVATPGRTCVNLNAGALSL 178
Query: 176 KSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILH 235
D L LV+DEADL+LSYGY+DDL+++S IP+G Q LMSAT SSDV+ LK L
Sbjct: 179 ----DRLAHLVIDEADLVLSYGYDDDLQSISKSIPKGTQTFLMSATLSSDVEDLKGLFCR 234
Query: 236 NPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDM 295
+P +L L E + K +V Q+ + C+E +K L + + L+LV+ K ++F ID
Sbjct: 235 DPVLLELDEKEEDKGKV-----SQYIVKCAEDEKFLLMYAIFMLKLVKGKVIVFVGDIDR 289
Query: 296 AFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD--------DTQTKE 347
+RLKLFLE+FGIKS +LN+ELP NSR+H++EEFN ++D +IA+D D + K
Sbjct: 290 CYRLKLFLEQFGIKSCVLNSELPVNSRIHVVEEFNRNVYDIIIASDEHEVLGDEDKKNKR 349
Query: 348 KDQS-----------------DEGGHVDSRKSKKHPKAKL--DS---------------E 373
K + DEG D+ + K K DS E
Sbjct: 350 KSKGGDEDEEKAEEAEKSNGKDEGADGDAADNDAESKTKTVEDSTEPPRKKRKGRKKDKE 409
Query: 374 FGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSP----------- 422
+G+ RGIDF+NV V+NF++P ++ Y HRIGRT RA G ++S V P
Sbjct: 410 YGIARGIDFQNVSLVLNFDLPTSSKSYTHRIGRTARAGQNGMAISFVIPKDKFRKHKPTS 469
Query: 423 -DEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRA 481
+ K EE+ + + + + N + P+ A+E RYR D ++VT+IAVRE+RA
Sbjct: 470 IESCKNDEEVLAKIMKSQEKRGNKVQPYH-FDMKALEGFRYRLADALRAVTRIAVREARA 528
Query: 482 QDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAK------- 534
++LR E+L SEKLK HFE NP++L L+HD ++ HL+ VP+YLL A
Sbjct: 529 RELRQELLKSEKLKRHFEENPQELQHLRHDAEVRTARQQPHLKHVPEYLLPAGGKKDVEK 588
Query: 535 -------TQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSFSAEPTKRAGKGRMK 587
++ + ++ +A M +N S+ +G K +K+DPLK+F+A KGR K
Sbjct: 589 EVGFIGFRKDEGRENRIRKARM--QNRSKGKGRIAKTKKADPLKTFNA-------KGRGK 639
Query: 588 R 588
+
Sbjct: 640 K 640
>gi|261195464|ref|XP_002624136.1| ATP-dependent RNA helicase DBP9 [Ajellomyces dermatitidis SLH14081]
gi|239588008|gb|EEQ70651.1| ATP-dependent RNA helicase DBP9 [Ajellomyces dermatitidis SLH14081]
Length = 628
Score = 400 bits (1028), Expect = e-108, Method: Compositional matrix adjust.
Identities = 237/636 (37%), Positives = 355/636 (55%), Gaps = 78/636 (12%)
Query: 5 KEIPSKEVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGK 64
+++ + V E+ + SFE L LD RL+ AL ++ KPTLIQ +IPL L+GK
Sbjct: 3 RKLDANNVPSPEDSAGKNNTAHSFENLNLDPRLLQALTQQKFTKPTLIQAEAIPLALDGK 62
Query: 65 DVVARAKTGSGKTFAYLLPLLHRLFNESS--PKSKLAPAALVLVPTRELCQQVYSEVMAL 122
DV+ARAKTGSGKT AYLLP+L + + + P K A + L+LVPTREL +QV+ V +
Sbjct: 63 DVLARAKTGSGKTAAYLLPILQSILQKKTNDPTHK-AISTLILVPTRELAEQVHKTVTSF 121
Query: 123 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSL 182
+ + LT + + R+ LA PDIVI+TP +++ L + +
Sbjct: 122 SAFAGKDI--RSTNLTQKVSDAVQRSILADLPDIVISTPARAVVNINSSALTLQHLTH-- 177
Query: 183 KILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL 242
LV+DEADL+LSYGYE+D+++L+ +PRG Q LMSAT +S+VD LK L NP +L L
Sbjct: 178 --LVIDEADLVLSYGYEEDMQSLANAVPRGVQAFLMSATFTSEVDALKGLFCRNPVVLKL 235
Query: 243 PEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLF 302
E D + QF + C+E +K L + KL+LV+ K +IF +D +RLKLF
Sbjct: 236 EEKEDEG-----AGISQFVVRCAEDEKFLLTYVIFKLQLVKGKCIIFVGDVDRCYRLKLF 290
Query: 303 LEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ------------TKEKDQ 350
LE+FGI+S +LN+ELP NSR+H+++EFN G++D +IA DD + +++ DQ
Sbjct: 291 LEQFGIRSCVLNSELPVNSRIHVVQEFNKGVYDIIIAADDQEVLGELPKKPRKPSRKSDQ 350
Query: 351 S--------DEGGHVDS---------------RKSKKHPKAKLDSEFGVVRGIDFKNVHT 387
S D+G V + R SK+ K+ + ++G+ RGIDF++V
Sbjct: 351 SSKDPEQENDDGSGVKTTNNYLQDSSEDETKARPSKRPKKSAKEKDYGISRGIDFQDVAC 410
Query: 388 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENED----- 442
V+NF++P N+ Y HRIGRTGRA TG ++S V P + + SF +E
Sbjct: 411 VLNFDLPTNSKSYTHRIGRTGRAGKTGMALSFVVPSDQFGKHKPTSFSSAKHDEAVLGKI 470
Query: 443 -------SNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLK 495
+ P+ + V++ RYR D ++VT++AV+E+RA+++R E++ SEKLK
Sbjct: 471 IKRQGKLGREVKPYHFEMKQ-VDAFRYRMSDALRAVTRVAVQEARAREIRQELVKSEKLK 529
Query: 496 AHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMV------------- 542
HFE NP++L L+HD +L +HL+ VPDYL+ K +
Sbjct: 530 RHFEENPEELRQLRHDGELRAARVQAHLKHVPDYLMPTKGKGGLSSGPAGDVGFVGFRKT 589
Query: 543 ---KLARAAMGNKNSSRRQGPRRKFRKSDPLKSFSA 575
++ +A N+ R R +K DPLKSF++
Sbjct: 590 HENRIRKARERNRGRGRPAKAGRGGKKVDPLKSFNS 625
>gi|315051032|ref|XP_003174890.1| ATP-dependent RNA helicase DBP9 [Arthroderma gypseum CBS 118893]
gi|311340205|gb|EFQ99407.1| ATP-dependent RNA helicase DBP9 [Arthroderma gypseum CBS 118893]
Length = 616
Score = 400 bits (1027), Expect = e-108, Method: Compositional matrix adjust.
Identities = 240/607 (39%), Positives = 348/607 (57%), Gaps = 70/607 (11%)
Query: 26 KSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLL 85
++FE+ GLD RL+ AL + KPTL+Q +IPL L GKD++ARAKTGSGKT AYL+P+L
Sbjct: 24 RNFEDFGLDPRLLQALTSQKFSKPTLVQAEAIPLALNGKDILARAKTGSGKTAAYLIPIL 83
Query: 86 HRLFNESS--PKSKLAPAALVLVPTRELCQQVYSEVMALIELC-KGQVQLKVVQLTSSMP 142
++ + + P K + + L+LVPTREL QQV+ V A E C KG ++ LT +
Sbjct: 84 QKILQKKAAHPAHK-SISTLILVPTRELAQQVHKTVTAFSEFCSKG---IRSGNLTQKVS 139
Query: 143 ASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 202
+ RA LA PDIVI+TP V S D + +V+DEADL+LSYGYE D+
Sbjct: 140 DAVQRALLADLPDIVISTPARA----VVNVNNSALVLDDISQVVIDEADLVLSYGYEQDM 195
Query: 203 KALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWI 262
++L+ IPRG Q LMSAT +S+VD LK L +P IL L E D + QF +
Sbjct: 196 QSLAKAIPRGVQTFLMSATLTSEVDTLKGLFCRSPAILKLEEAEDEG-----AGISQFAV 250
Query: 263 SCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 322
C+E +K L + KL+LV+ K +IF +D +RLKLFLE+FGIKS ILN+ELP NSR
Sbjct: 251 KCAEDEKFLLTYVIFKLQLVKGKCIIFVGDVDRCYRLKLFLEQFGIKSCILNSELPANSR 310
Query: 323 LHILEEFNAGLFDYLIATDD------TQTKEKDQSDEGGHV------------DSRKSKK 364
+H ++EFN G++D +IA DD ++K++ E V D + ++
Sbjct: 311 IHAVQEFNKGVYDIIIAADDQEVIGKVESKKEPVGSEDATVTDAVAEESKDLSDPEEVEE 370
Query: 365 HP----------KAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTG 414
P K+ + ++G+ RGIDF++V V+NF++P A Y HRIGRTGRA TG
Sbjct: 371 KPAPSNKNKKRKKSGKEKDYGISRGIDFQDVACVLNFDLPTTAKSYTHRIGRTGRAGKTG 430
Query: 415 ASVSLVSPDEM------KIFEEIK---SFVGDDENEDSNI---IAPFPLLAQNAVESLRY 462
++S V P E+ IF K S + E + + + P+ + +E RY
Sbjct: 431 MALSFVVPSELYGKHKPTIFPPAKNDESVLAKIEKRQAKMGREVKPYH-FDKKQIEVFRY 489
Query: 463 RAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASH 522
R D ++VT+IA++E+RA+++R E++ SEKLK HFE NP++L L+HD++L S
Sbjct: 490 RMTDALRAVTRIAIQEARAKEIRQELVKSEKLKRHFEENPQELRELRHDQELGSVRVQSQ 549
Query: 523 LRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRK-------------FRKSDP 569
L+ VP+YL+ K + + + + K +R + R+K RK DP
Sbjct: 550 LKSVPEYLMPTKGKSSLTSEDIGFVGLHKKKENRIRQARQKNRARGRIAKKGGAGRKVDP 609
Query: 570 LKSFSAE 576
LKSF ++
Sbjct: 610 LKSFKSK 616
>gi|119481657|ref|XP_001260857.1| ATP dependent RNA helicase (Dbp9), putative [Neosartorya fischeri
NRRL 181]
gi|134034085|sp|A1DHV3.1|DBP9_NEOFI RecName: Full=ATP-dependent RNA helicase dbp9
gi|119409011|gb|EAW18960.1| ATP dependent RNA helicase (Dbp9), putative [Neosartorya fischeri
NRRL 181]
Length = 619
Score = 400 bits (1027), Expect = e-108, Method: Compositional matrix adjust.
Identities = 239/622 (38%), Positives = 352/622 (56%), Gaps = 64/622 (10%)
Query: 4 SKEIPSKEVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEG 63
+ ++PS EV AEE+E + + FE L LD RL AL ++ KPT +Q +IPL LEG
Sbjct: 7 ANDVPSTEV--AEEKETKDADNTDFESLNLDPRLRQALIREQFTKPTPVQSKAIPLALEG 64
Query: 64 KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKL-APAALVLVPTRELCQQVYSEVMAL 122
KD++ARAKTGSGKT AY+LP+L + + + L A LVLVPTREL +QV S ++
Sbjct: 65 KDILARAKTGSGKTAAYVLPILQTILQKKAADPSLKATTGLVLVPTRELAEQVQSVIIKF 124
Query: 123 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSL 182
C V + V LT + + R LA PD++++TP + L T L + L
Sbjct: 125 SAFCGKDV--RSVNLTQKVSDAVQRTMLADYPDLIVSTPARVIANLGTSALSL----EHL 178
Query: 183 KILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL 242
LV+DEADL+LSYGY++D+ AL+ IPRG Q LMSAT +S+VD LK L +P IL L
Sbjct: 179 THLVIDEADLVLSYGYDEDINALAKAIPRGVQTFLMSATLTSEVDTLKGLFCRSPVILKL 238
Query: 243 PEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLF 302
D +DE + QF + C+E +K L + KL+L++ K +IF ID +RLKLF
Sbjct: 239 E---DKEDE--GAGISQFVVRCAEDEKFLLTYVIFKLQLIKGKVIIFVGDIDRCYRLKLF 293
Query: 303 LEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ------------------ 344
LE+FGIKS +LN+ELP NSR+H+++EFN G++D +IA D+ +
Sbjct: 294 LEQFGIKSCVLNSELPINSRIHVVQEFNKGVYDIIIAADEQEVMGSRTSSKKSKEATDGD 353
Query: 345 ---------TKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQ 395
++++D E +R K+ + ++G+ RGIDF+NV V+NF++P
Sbjct: 354 DEAKDKMGSSEDEDNEPEQSGKSARPEKRRKTSGKAKDYGISRGIDFQNVACVLNFDLPT 413
Query: 396 NAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF--VGDDENEDSNIIAPFPLLA 453
+ Y HRIGRTGRA G ++S V P + + SF DE+ + I+ L
Sbjct: 414 TSKSYTHRIGRTGRAGKAGMALSFVVPADEFGKHKPTSFPTAKHDESVLAKIVKKQAKLG 473
Query: 454 QNA---------VESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKD 504
V++ RYR D ++VT++A++E+RA+++R E++ SEKLK HFE NP++
Sbjct: 474 HEVKPYHFEMKQVDAFRYRMTDALRAVTRLAIQEARAREIRQELVKSEKLKRHFEENPEE 533
Query: 505 LDLLKHDKDLSKKPPASHLRDVPDYLLDAK-----TQEACKMVKLARAAMGN----KNSS 555
L L+HD +L HL+ +PDYL+ +K + E V ++ + +
Sbjct: 534 LKQLRHDGELRAARIQPHLKHIPDYLMPSKGRKGISSEDVGFVGFRKSGDNRIRKAREKN 593
Query: 556 RRQGPRRK---FRKSDPLKSFS 574
R +G RK RK DPLK+F+
Sbjct: 594 RGKGKGRKPSGVRKVDPLKTFN 615
>gi|239610502|gb|EEQ87489.1| ATP-dependent RNA helicase DBP9 [Ajellomyces dermatitidis ER-3]
Length = 628
Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust.
Identities = 235/614 (38%), Positives = 347/614 (56%), Gaps = 78/614 (12%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SFE L LD RL+ AL ++ KPTLIQ +IPL L+GKDV+ARAKTGSGKT AYLLP+L
Sbjct: 25 SFENLNLDPRLLQALTQQKFTKPTLIQAEAIPLALDGKDVLARAKTGSGKTAAYLLPILQ 84
Query: 87 RLFNESS--PKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
+ + + P K A + L+LVPTREL +QV+ V + + + LT + +
Sbjct: 85 SILQKKTNDPTHK-AISTLILVPTRELAEQVHKTVTSFSAFAGKDI--RSTNLTQKVSDA 141
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
R+ LA PDIVI+TP +++ L + + LV+DEADL+LSYGYE+D+++
Sbjct: 142 VQRSILADLPDIVISTPARAVVNINSSALTLQHLTH----LVIDEADLVLSYGYEEDMQS 197
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264
L+ +PRG Q LMSAT +S+VD LK L NP +L L E D + QF + C
Sbjct: 198 LAKAVPRGVQAFLMSATFTSEVDALKGLFCRNPVVLKLEEKEDEG-----AGISQFVVRC 252
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
+E +K L + KL+LV+ K +IF +D +RLKLFLE+FGI+S +LN+ELP NSR+H
Sbjct: 253 AEDEKFLLTYVIFKLQLVKGKCIIFVGDVDRCYRLKLFLEQFGIRSCVLNSELPVNSRIH 312
Query: 325 ILEEFNAGLFDYLIATDDTQ------------TKEKDQS--------DEGGHVDS----- 359
+++EFN G++D +IA DD + +++ DQS D+G V +
Sbjct: 313 VVQEFNKGVYDIIIAADDQEVLGELPKKPRKPSRKSDQSSKDPEQENDDGSGVKTTNNYL 372
Query: 360 ----------RKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGR 409
R SK+ K+ + ++G+ RGIDF++V V+NF++P N+ Y HRIGRTGR
Sbjct: 373 QDSSEDETKARPSKRPKKSAKEKDYGISRGIDFQDVACVLNFDLPTNSKSYTHRIGRTGR 432
Query: 410 AYNTGASVSLVSPDEMKIFEEIKSFVGDDENED------------SNIIAPFPLLAQNAV 457
A TG ++S V P + + SF +E + P+ + V
Sbjct: 433 AGKTGMALSFVVPSDQFGKHKPTSFSSAKHDEAVLGKIIKRQGKLGREVKPYHFEMKQ-V 491
Query: 458 ESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKK 517
++ RYR D ++VT++AV+E+RA+++R E++ SEKLK HFE NP++L L+HD +L
Sbjct: 492 DAFRYRMSDALRAVTRVAVQEARAREIRQELVKSEKLKRHFEENPEELRQLRHDGELRAA 551
Query: 518 PPASHLRDVPDYLLDAKTQEACKMV----------------KLARAAMGNKNSSRRQGPR 561
+HL+ VPDYL+ K + ++ +A N+ R
Sbjct: 552 RVQAHLKHVPDYLMPTKGKGGLSSGPAGDVGFVGFRKTHENRIRKARERNRGRGRPAKAG 611
Query: 562 RKFRKSDPLKSFSA 575
R +K DPLKSF++
Sbjct: 612 RGGKKVDPLKSFNS 625
>gi|400599562|gb|EJP67259.1| DEAD/DEAH box helicase [Beauveria bassiana ARSEF 2860]
Length = 604
Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust.
Identities = 239/593 (40%), Positives = 356/593 (60%), Gaps = 49/593 (8%)
Query: 20 AEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFA 79
++E+ SF +L LD RLV A+ ++ +PTL+Q+ +IP+ L+G+DV+ +AKTGSGKT A
Sbjct: 20 GKSEKSFSFTDLALDPRLVQAVAEQKFSQPTLVQRMAIPIALKGQDVLCKAKTGSGKTAA 79
Query: 80 YLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTS 139
Y+LP+L+ + + + A AL+LVPTREL QV+ + C V + V+LT
Sbjct: 80 YVLPVLNGILKRKTTDPEPATTALILVPTRELADQVFKAIEQFSAFCSKDV--RAVKLTD 137
Query: 140 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE 199
+ + R+ LA PDIVI+TP ++ G + S + L LVLDEADLLLSYGY+
Sbjct: 138 KLSDAVQRSLLATLPDIVISTPARAWHNVN-GNSSALSLA-KLSHLVLDEADLLLSYGYD 195
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN--- 256
DL+ LS IP+G Q ++MSAT +S+V+ LKK+ + +PE+ D+++ P+N
Sbjct: 196 GDLENLSWSIPKGIQTIMMSATLTSEVNSLKKIFYRD----NVPELLDLEE---PENEGE 248
Query: 257 -VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNA 315
+ Q C+E +K L + KL+LV+ K +IF ID +RLKLF E+FGI+S ILNA
Sbjct: 249 GITQLVTKCAEDEKFLLAYVIFKLKLVKGKCIIFVADIDRCYRLKLFFEQFGIRSCILNA 308
Query: 316 ELPQNSRLHILEEFNAGLFDYLIATDDTQ----------TKEKDQSDEGGHVDSRKSKKH 365
ELP NSR+H++EEFN ++D +IA+D+ + + ++ ++ G +++KS+K
Sbjct: 309 ELPVNSRIHVVEEFNKNVYDIIIASDENEILGNEDKAGEEEAEEAEEQEGEEETQKSEKR 368
Query: 366 PKAKL-----DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLV 420
PK K D E+GV RGIDFKNV VINF++P A+ Y HRIGRT RA G ++S V
Sbjct: 369 PKKKRKATEQDLEYGVSRGIDFKNVAAVINFDLPTTASSYTHRIGRTARAGKAGMALSFV 428
Query: 421 SP-DEMKIF-----------EEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVA 468
P D+ + E+I + + + + I P+ + VE+ RYR D
Sbjct: 429 VPKDQYRKHMPTTIASTEKDEKIMARITKQQAKKGKEIKPYNFNPEQ-VEAFRYRMNDAL 487
Query: 469 KSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPD 528
++VTK+AVRE+R ++LR E+L SEKLK +FE NP ++ L+HD +L +HL+ +P+
Sbjct: 488 RAVTKVAVREARTRELRQELLKSEKLKRYFEENPTEMAHLRHDGELRTARQQAHLKHIPE 547
Query: 529 YLLDAKTQEACKMVKLA----RAAMGNKNSSRR--QGPRRKFRKSDPLKSFSA 575
YLL + +EA K+ R G S+R G R RK DPLK+F+A
Sbjct: 548 YLLPKEGKEALTAAKIGFVPLRKFGGKDRKSKRGKSGKRIGSRKGDPLKTFTA 600
>gi|340370804|ref|XP_003383936.1| PREDICTED: probable ATP-dependent RNA helicase DDX56-like
[Amphimedon queenslandica]
Length = 545
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 224/569 (39%), Positives = 345/569 (60%), Gaps = 37/569 (6%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F+E+ LD R+V A+ K G +PT IQ+ ++PLI+EGKD+V +AKTGSGKT +Y LPL+ +
Sbjct: 3 FDEMNLDPRIVKAVRKLGWGQPTPIQEKAVPLIMEGKDLVVKAKTGSGKTASYALPLIQK 62
Query: 88 LFNESSPKSKLAPA--ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASD 145
+ S K+ P+ ALVLVP++EL Q +++ L C + KVV ++ S S
Sbjct: 63 ILELQSTSIKVPPSVKALVLVPSQELSLQAAAQIKELCTCCSRDI--KVVCVSQSNAVSS 120
Query: 146 LRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL 205
R L PD+V+ TP + LS +S ++SL ++ DEADLL SYGYE+D+ +
Sbjct: 121 QRTVLLECPDVVVGTPS---RILSHLSGKSLLLTESLHFVIFDEADLLFSYGYEEDINNI 177
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
+ +P Q +LMSAT + DV LKK++LH P + L E +D+ + Q+ I C
Sbjct: 178 VSFLPSPIQSILMSATLNEDVISLKKVVLHQPVTIKLEESELPQDD----RLTQYHIQCL 233
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
E DK L I +LLKL+L++ K+LIF N I ++LKLFLE+F IKS +LN+ELP NSR H+
Sbjct: 234 EDDKFLLIYSLLKLKLIRGKSLIFVNDITRCYKLKLFLEQFFIKSCVLNSELPHNSRCHV 293
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
+E+FN ++DY+IATD+ VD K K D E+GV RGIDF+ V
Sbjct: 294 IEQFNRDIYDYIIATDEL-------------VDHTHQTKKKKKGQDKEYGVSRGIDFQGV 340
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNI 445
V+NF+ P N+ Y+HR+GRT R + G +++ VSP E E++ + + + D ++
Sbjct: 341 VNVVNFDFPPNSKAYIHRVGRTARGNDYGTALTFVSPSEETKLTELQLLLKEQRDFDHDL 400
Query: 446 IAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDL 505
+ P+ + +E RYR ++ ++VT++A++E+R +++R EIL+S++LK HFE NP+DL
Sbjct: 401 VQPYK-FKMSEIEGFRYRVQEAVQAVTQLAIKEARLKEIRCEILSSKRLKTHFEDNPRDL 459
Query: 506 DLLKHDKDLSKKPPAS----HLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPR 561
+L+HD+DL P+S HL+ +P YL+ + + R +G+ N RR+ +
Sbjct: 460 QVLRHDRDLL---PSSKVKEHLKYIPPYLVPKALKSSAVE---EREGIGDGNMKRRRAHK 513
Query: 562 RKFRKSDPLKSFS-AEPTKRAGKGRMKRE 589
+ + ++PLK+F TK K KR+
Sbjct: 514 VR-QHNNPLKTFKLTNETKLVSKPSKKRK 541
>gi|380494042|emb|CCF33441.1| ATP-dependent RNA helicase DBP9 [Colletotrichum higginsianum]
Length = 594
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 235/596 (39%), Positives = 352/596 (59%), Gaps = 41/596 (6%)
Query: 7 IPSKEVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDV 66
+P+ E ++ + E A E SF +LGLD RLV A+ + + PT +QQ +IPL L+GKDV
Sbjct: 10 VPAGETEKRAKTEQSATPELSFADLGLDTRLVQAVAAESFKDPTPVQQKAIPLALDGKDV 69
Query: 67 VARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELC 126
VA+A GSGKT AY+LP+L + + S A AL+LVPTREL QV + C
Sbjct: 70 VAKAPCGSGKTAAYVLPVLSSILKRKTTDSSPATTALILVPTRELADQVLKAIEQFSAYC 129
Query: 127 KGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILV 186
+ ++L + + R+ L+ PD+VI+TP + + + L D+L ++
Sbjct: 130 AKDIH--AIKLVDKISDAVQRSLLSNFPDVVISTPATAWRNIVSEALSL----DNLTCMI 183
Query: 187 LDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVG 246
LDEADL+LSYGY +DL+ ++ +P+G Q +MSAT S+DV L+ + P +L L +
Sbjct: 184 LDEADLILSYGYNEDLENIARKLPKGVQLTMMSATLSTDVTSLQGIFGRKPTVLDLDD-- 241
Query: 247 DVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKF 306
+E ++ QF +SC E +K L + KL+LV+ K LIF N +D ++RLKLFLE+F
Sbjct: 242 ---EETEGDSLSQFVVSCGEDEKFLLAFIIFKLKLVKGKCLIFVNDVDRSYRLKLFLEQF 298
Query: 307 GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ---TKEKDQSDEGG----HVDS 359
++S ILN+ELP SR H+LEEFN G++D +IA+D+ +EKD E G +
Sbjct: 299 QVRSCILNSELPVTSRAHVLEEFNRGVYDIIIASDEKSAMGAEEKDVEGEEGTEQPEKEK 358
Query: 360 RKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSL 419
+SKK K+K D+EFGV RGIDFKNV V+NF++P +A+ Y HRIGRT RA TG ++S
Sbjct: 359 EQSKKKRKSKRDAEFGVSRGIDFKNVAAVVNFDLPTSASSYTHRIGRTARAGRTGMALSF 418
Query: 420 VSPDEM------------KIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDV 467
P E+ + E+I + + + + + P+ ++ +++ RYR +D
Sbjct: 419 YVPSELYRKHLPTSIETAENDEKILARIKKQQAKQGKEVKPYNFKKEH-LDAFRYRLDDA 477
Query: 468 AKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVP 527
++VTK+AVRE+R ++L+ E+L SEKLK +FE NP +L L+HD +L HL+ +P
Sbjct: 478 LRAVTKVAVREARMRELKQELLKSEKLKRYFEENPTELQHLRHDGELRTARQQPHLKHIP 537
Query: 528 DYLL-----DAKTQEACKMVKLARAAMGNKNSSRRQGPRRK---FRKSDPLKSFSA 575
+YLL D+ T+ MV + +G K + P RK RK +PLK+F A
Sbjct: 538 EYLLPKEGKDSLTKNDIGMVPFRK--IGGKQRRSKGKPGRKKIGTRKVNPLKTFKA 591
>gi|255933215|ref|XP_002558078.1| Pc12g12670 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582697|emb|CAP80894.1| Pc12g12670 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 613
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 241/623 (38%), Positives = 352/623 (56%), Gaps = 72/623 (11%)
Query: 4 SKEIPSKEVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEG 63
+ ++PS AE++E + FE L LD RL AL K+ KPTL+Q +IPL LEG
Sbjct: 7 ANDVPSPGAAGAEDQELD------FEALNLDPRLRQALIKEKFTKPTLVQSKAIPLALEG 60
Query: 64 KDVVARAKTGSGKTFAYLLPLLHRLFNESS--PKSKLAPAALVLVPTRELCQQVYSEVMA 121
KD++ARAKTGSGKT AY+LP+L + + + P SK A AL+LVPTREL +QV + +
Sbjct: 61 KDILARAKTGSGKTAAYVLPILQAILQQKTADPSSK-ATTALILVPTRELAEQVQKVITS 119
Query: 122 LIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS 181
C + + V LT + R+ LA PDIV++TP + ++ L D
Sbjct: 120 FASFCGKDI--RSVNLTQKVSDEVQRSMLADFPDIVVSTPTRVYSNVNNSALSL----DK 173
Query: 182 LKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILT 241
+ LV+DEADL+LSYGY++++ ALS IPRG Q LMSAT +S+VD LK L NP IL
Sbjct: 174 VTHLVIDEADLVLSYGYDEEINALSKAIPRGAQTFLMSATLTSEVDTLKDLYCRNPVILK 233
Query: 242 LPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKL 301
L E E V QF + C+E +K L + KL+L++ K +IF +D +R+KL
Sbjct: 234 LEE-----KEEKGAGVSQFVVRCAEDEKFLLTYVIFKLQLIKGKVIIFVADVDRCYRVKL 288
Query: 302 FLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ----TKEK--------- 348
FLE+FG+KS +LN+ELP NSR+H++EEFN G++D ++A D+ + TK K
Sbjct: 289 FLEQFGLKSCVLNSELPINSRIHVVEEFNKGVYDIIVAADEQEVMGVTKSKKSREDKEAE 348
Query: 349 -------------------DQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVI 389
D+S +G +++K +K + D + + RGIDF+NV V+
Sbjct: 349 AEEEEAKEEMGSSEDEEAVDESGKGKKPETKKRRKMTSKEKD--YSIARGIDFQNVACVL 406
Query: 390 NFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF--VGDDENEDSNIIA 447
NF++P ++ Y HRIGRTGRA G ++S V P + + S DE + II
Sbjct: 407 NFDLPTSSKSYTHRIGRTGRAGKAGMALSFVIPTDQHGKHKPTSIPSTKHDETMLAKIIK 466
Query: 448 PFPLLAQ---------NAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHF 498
L + V++ RYR D +SVT++AV+E+R +++R E++ SEKLK HF
Sbjct: 467 KQTKLGHEVKPYHFEMSQVDAFRYRMTDALRSVTRLAVQEARGREIRQELIKSEKLKRHF 526
Query: 499 EVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEAC--KMVKLARAAMGNKNSSR 556
E NP++L L+HD +L +HL+ VPDYL+ AK ++ + V + +N R
Sbjct: 527 EENPEELRQLRHDGELRAARVQAHLKHVPDYLMPAKGRKGLSKENVGFVGFSKSKQNRIR 586
Query: 557 RQGPRRKFR-----KSDPLKSFS 574
+ R + R K DPLK+F+
Sbjct: 587 KARDRNRARGKSGGKVDPLKTFN 609
>gi|71002100|ref|XP_755731.1| ATP dependent RNA helicase (Dbp9) [Aspergillus fumigatus Af293]
gi|74675200|sp|Q4X0C2.1|DBP9_ASPFU RecName: Full=ATP-dependent RNA helicase dbp9
gi|66853369|gb|EAL93693.1| ATP dependent RNA helicase (Dbp9), putative [Aspergillus fumigatus
Af293]
gi|159129787|gb|EDP54901.1| ATP dependent RNA helicase (Dbp9), putative [Aspergillus fumigatus
A1163]
Length = 649
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 237/622 (38%), Positives = 352/622 (56%), Gaps = 64/622 (10%)
Query: 4 SKEIPSKEVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEG 63
+ ++PS EV+ EE+ + + FE L LD RL AL K+ KPT +Q +IPL LEG
Sbjct: 37 ANDVPSTEVE--EEKNTKDADNTDFESLNLDPRLRQALIKEQFTKPTPVQSKAIPLALEG 94
Query: 64 KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKL-APAALVLVPTRELCQQVYSEVMAL 122
KD++ARAKTGSGKT AY+LP+L + + + L A L+LVPTREL +QV S ++
Sbjct: 95 KDILARAKTGSGKTAAYVLPILQTILQKKAADPSLKATTGLILVPTRELAEQVQSVIIKF 154
Query: 123 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSL 182
C V + V LT + + R LA PD++++TP + L T L ++L
Sbjct: 155 SAFCGKDV--RSVNLTQKVSDAVQRTMLADYPDLIVSTPARVIANLGTSALSL----ENL 208
Query: 183 KILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL 242
LV+DEADL+LSYGY++D+ AL+ IPRG Q LMSAT +S+VD LK L +P IL L
Sbjct: 209 THLVIDEADLVLSYGYDEDINALAKAIPRGVQTFLMSATLTSEVDTLKGLFCRSPVILKL 268
Query: 243 PEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLF 302
D +DE + QF + C+E +K L + KL+L++ K +IF ID +RLKLF
Sbjct: 269 E---DKEDE--GAGISQFVVRCAEDEKFLLTYVIFKLQLIKGKVIIFVGDIDRCYRLKLF 323
Query: 303 LEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ------------------ 344
LE+FGIKS +LN+ELP NSR+H+++EFN G++D +IA D+ +
Sbjct: 324 LEQFGIKSCVLNSELPINSRIHVVQEFNKGVYDIIIAADEQEVMGLRTSSKKSKEATDGD 383
Query: 345 ---------TKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQ 395
++++D E +R K+ + ++G+ RGIDF+NV V+NF++P
Sbjct: 384 DEAKDKMGSSEDEDNEPEQSGKSARPEKRRKTSGKAKDYGISRGIDFQNVACVLNFDLPT 443
Query: 396 NAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF--VGDDENEDSNIIAPFPLLA 453
+ Y HRIGRTGRA G ++S V P + + SF DE+ + I+ L
Sbjct: 444 TSKSYTHRIGRTGRAGKAGMALSFVVPADKFGKHKPTSFPTAKHDESVLAKIVKKQAKLG 503
Query: 454 QNA---------VESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKD 504
V++ RYR D ++VT++A++E+RA+++R E++ SEKLK HFE NP++
Sbjct: 504 HEVKPYHFEMKQVDAFRYRMTDALRAVTRLAIQEARAREIRQELVKSEKLKRHFEENPEE 563
Query: 505 LDLLKHDKDLSKKPPASHLRDVPDYLLDAK-----TQEACKMVKLARAAMGN----KNSS 555
L L+HD +L HL+ +PDYL+ +K + E V ++ + +
Sbjct: 564 LKQLRHDGELRAARIQPHLKHIPDYLMPSKGRKGISSEDVGFVGFRKSGDNRIRKAREKN 623
Query: 556 RRQGPRRK---FRKSDPLKSFS 574
R +G RK RK DPLK+F+
Sbjct: 624 RGKGKGRKPSGVRKVDPLKTFN 645
>gi|134034084|sp|Q0CY48.2|DBP9_ASPTN RecName: Full=ATP-dependent RNA helicase dbp9
Length = 619
Score = 397 bits (1020), Expect = e-107, Method: Compositional matrix adjust.
Identities = 230/599 (38%), Positives = 338/599 (56%), Gaps = 64/599 (10%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
FE L LD RL AL K+ KPTL+Q +IPL LEGKD++ARAKTGSGKT AY+LP+L
Sbjct: 29 FESLNLDPRLRQALVKEKFTKPTLVQAKAIPLALEGKDILARAKTGSGKTAAYVLPILQT 88
Query: 88 LFNESSPKSKL-APAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
+ + + L A L+LVPTREL +QV + + C V + V LT + +
Sbjct: 89 ILQKKANDPSLKATTGLILVPTRELAEQVQNVITTFAAFCGKDV--RSVNLTQKVSDAVQ 146
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
R LA PD++++TP + L + L ++L LV+DEADL+LSYGY++D+ AL+
Sbjct: 147 RTMLADYPDLIVSTPSRVIANLGSSALSL----ENLTHLVIDEADLVLSYGYDEDINALA 202
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
IPRG Q LMSAT +++VD LK L +P IL L + D V QF + C+E
Sbjct: 203 KAIPRGVQTFLMSATLTAEVDTLKGLFCRSPVILKLEDKDDQGS-----GVSQFVVKCAE 257
Query: 267 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
+K L + KL+L++ K +IF +D +R+KLFLE+FGIKS +LN+ELP NSRLH++
Sbjct: 258 DEKFLLTYVIFKLQLIKGKVIIFVGDVDRCYRVKLFLEQFGIKSCVLNSELPVNSRLHVV 317
Query: 327 EEFNAGLFDYLIATDDTQ---------TKEKDQSDEG------------------GHVDS 359
+EFN G++D +IA D+ + +KE +++D G D
Sbjct: 318 QEFNKGVYDIIIAADEQEVMGARKSKKSKEAEENDAGEAAGSSDEDEGEAQKPSTTRSDK 377
Query: 360 RKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSL 419
K+ A D ++G+ RGIDF+NV V+NF++P + Y HRIGRTGRA TG ++S
Sbjct: 378 PSEKRRKTAGKDKDYGISRGIDFQNVACVLNFDLPTTSKSYTHRIGRTGRAGKTGMALSF 437
Query: 420 VSPDEMKIFEEIKSF--VGDDENEDSNI----------IAPFPLLAQNAVESLRYRAEDV 467
V P + + SF DE + I + P+ + V++ RYR D
Sbjct: 438 VVPADQFGKHKPTSFPTAKHDETVLAKITKRQAKLGHEVKPYHFEMKQ-VDAFRYRMTDA 496
Query: 468 AKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVP 527
+S+T++AV+E+RA+++R E++ SEKLK HFE NP++L L+HD +L HL+ +P
Sbjct: 497 LRSITRLAVQEARAREIRQELIKSEKLKRHFEENPEELRQLRHDDELRSARIQPHLKHIP 556
Query: 528 DYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFR------------KSDPLKSFS 574
DYL+ +K ++ + + +R + R K R K DPLK+F+
Sbjct: 557 DYLMPSKGKKGISSENVGYVGFRKTSENRIRKAREKNRGKGKGRNYAGVKKVDPLKTFN 615
>gi|308799543|ref|XP_003074552.1| RNA helicase (ISS) [Ostreococcus tauri]
gi|116000723|emb|CAL50403.1| RNA helicase (ISS) [Ostreococcus tauri]
Length = 1934
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 224/548 (40%), Positives = 344/548 (62%), Gaps = 25/548 (4%)
Query: 15 AEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGS 74
A ++ A+ +++ +LGL + AL ++ +PT +Q+ +IPL LEG+ VV R+ TGS
Sbjct: 4 ARDDVADDHALRAWTDLGLHRAVARALVREHKTRPTAVQRRAIPLALEGRSVVVRSSTGS 63
Query: 75 GKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKV 134
GKT +Y+ P++H L +S + K A+V PTREL +QV + LC ++
Sbjct: 64 GKTMSYVAPIVHALCGTASER-KRGLRAIVFAPTRELARQVRRACASTTRLCAPGCRVGE 122
Query: 135 VQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLL 194
+ S+ S LR PP+I+++TP + +C+ G + + L+ +VLDE DLLL
Sbjct: 123 LPAPSAG-TSVLRETAGSPPEILVSTPARVAECVRGGYFPPGALEEELETVVLDEVDLLL 181
Query: 195 SYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL-------TLPEVGD 247
S+GY DD+K++ + RG + +++SAT S +V++L+ ++ H P + + E GD
Sbjct: 182 SFGYVDDIKSVMKPVKRGTRVMMLSATLSPEVEELRDVVAHKPTTIDVEDEEAAMKEEGD 241
Query: 248 VKDEVIPK--NVQQFWISCSER-DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLE 304
+D+ P N+ + + ++ D+LLY + LL+L L +KK L+F + D A RL+LFL
Sbjct: 242 DQDDGKPSAPNISHYSLEIAKSSDRLLYTMALLRLGLCKKKVLVFVSNADAAVRLRLFLH 301
Query: 305 KFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD-----TQTKEKDQSDEGGHVDS 359
KFG+ + L++ELP NSR HIL+EFN G++D+++A D T+ +E+++ D+ +
Sbjct: 302 KFGVPTCALHSELPANSRAHILQEFNRGVYDFMVAAADDARVATEVEEEEEEDKA---PT 358
Query: 360 RKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSL 419
R+SKK K + D EFGVVRGIDF+ V TVINFE+P AA YVHR+GRTGRA +G ++++
Sbjct: 359 RESKKKKKDRRDKEFGVVRGIDFQAVGTVINFEVPATAAAYVHRVGRTGRAGKSGTAITI 418
Query: 420 VSPDEMKIFEEIK----SFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIA 475
VSP E + F++I+ S VGD + +I PF L + AV++LRYRAED A++V K A
Sbjct: 419 VSPTEEEAFKQIQEDLVSTVGDTVAA-TQVIQPFDRLPKEAVDALRYRAEDAARAVGKTA 477
Query: 476 VRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKT 535
V+E+R ++L+ E+LNSE+L AHFE N DL LLKHD LSK P A HL +P YL K
Sbjct: 478 VKEARVRELKQELLNSERLAAHFEDNADDLALLKHDSSLSKNPDAKHLSHLPGYLRGTKK 537
Query: 536 QEACKMVK 543
+ + V+
Sbjct: 538 RGDSRAVE 545
>gi|225563337|gb|EEH11616.1| ATP-dependent RNA helicase DBP9 [Ajellomyces capsulatus G186AR]
Length = 624
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 224/574 (39%), Positives = 335/574 (58%), Gaps = 57/574 (9%)
Query: 5 KEIPSKEVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGK 64
+++ + V E+ ++ SFE L LD RL+ AL ++ KPTLIQ +IPL L+GK
Sbjct: 3 RKLDANNVPSPEDSAGKSSTSHSFETLKLDPRLLQALTQQKFTKPTLIQAEAIPLALDGK 62
Query: 65 DVVARAKTGSGKTFAYLLPLLHRLFNE--SSPKSKLAPAALVLVPTRELCQQVYSEVMAL 122
DV+ARAKTGSGKT AYLLP+L + + ++P K + +AL+LVPTREL +QV+ ++
Sbjct: 63 DVLARAKTGSGKTAAYLLPVLQSILQQKMNNPAHK-SISALILVPTRELAEQVHRTAISF 121
Query: 123 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSL 182
+ + LT + + RA LA PDIV++TP +++ L + L
Sbjct: 122 SAFSGKDI--RSANLTQKVSDAVQRALLADLPDIVVSTPARAVANVNSSALSL----ERL 175
Query: 183 KILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL 242
LV+DEADL+LSYGYE+D++ L+ +PRG Q LMSAT +S+VD LK L NP +L L
Sbjct: 176 THLVIDEADLVLSYGYEEDMQNLAKAVPRGVQTFLMSATFTSEVDTLKGLFCRNPVVLKL 235
Query: 243 PEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLF 302
E D + QF + C+E +K L + KL+LV+ K +IF +D +RLKLF
Sbjct: 236 EEKEDEG-----AGISQFVVRCAEDEKFLLTYVIFKLQLVKGKCIIFVGDVDRCYRLKLF 290
Query: 303 LEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDT------------QTKEKDQ 350
LE+FGI+S +LN+ELP NSR+H+++EFN G++D +IA DD Q ++ DQ
Sbjct: 291 LEQFGIRSCVLNSELPVNSRIHVVQEFNKGVYDIIIAADDQEVLGELRKNSKKQPRKSDQ 350
Query: 351 SDEGGHVD------------------SRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFE 392
S D ++ SK+ K+ + ++G+ RGIDF+NV V+NF+
Sbjct: 351 SSRDSEYDGAQASKNNDQYSSEDDAETQPSKRPKKSAKEKDYGISRGIDFQNVACVLNFD 410
Query: 393 MPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM------------KIFEEIKSFVGDDEN 440
+P + Y HRIGRTGRA TG ++S V P + K E + S + +
Sbjct: 411 LPTTSKSYTHRIGRTGRAGKTGMALSFVIPSDQFGKHKPTSIPSAKHDEAMLSKIIKRQG 470
Query: 441 EDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEV 500
+ + P+ + V++ RYR D ++VT++AV+E+RA+++R E++ SEKLK HFE
Sbjct: 471 KLGREVKPYHFDMKQ-VDAFRYRMSDALRAVTRVAVQEARAREIRQELVKSEKLKRHFEE 529
Query: 501 NPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAK 534
NP++L L+HD +L +HL+ VPDYL+ K
Sbjct: 530 NPEELRQLRHDGELRAARVQAHLKHVPDYLMPTK 563
>gi|320167827|gb|EFW44726.1| ATP-dependent RNA helicase dbp9 [Capsaspora owczarzaki ATCC 30864]
Length = 631
Score = 394 bits (1011), Expect = e-106, Method: Compositional matrix adjust.
Identities = 240/636 (37%), Positives = 351/636 (55%), Gaps = 88/636 (13%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF+ L LD RL A+ K G +PTLIQ +IPL L+GKD++ARA+TGSGKT AY +P++
Sbjct: 6 SFDALRLDPRLQRAIAKLGWSRPTLIQAKAIPLALQGKDILARARTGSGKTAAYAIPVIQ 65
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQ-LKVVQLTSSMPASD 145
R+ +++ + A+VLVPTREL Q L + C +V +++ TS+
Sbjct: 66 RILADTAAAAIAVEQAIVLVPTRELSLQAKQNFKDLTQYCSREVTAVELAGDTSATAIEA 125
Query: 146 LRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL 205
R L PDIVI TP + + G L ++ SL+++V+DEADL+ +GYE+D+K L
Sbjct: 126 QRHELLANPDIVIGTPSRIVAHIEAGHLDVRT---SLQMIVVDEADLVFGFGYENDIKTL 182
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
+PR Q LMSAT S DVD LK+L+LH+P IL L E + D + Q+ I C
Sbjct: 183 LRHLPRIVQAFLMSATLSPDVDSLKRLMLHSPVILKLQE-SQLPDA---DRLMQYVIKCD 238
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
DK L + T LKL L++ K +IF N +D +R+KLFLE+FGI++ +LN+ELPQNSR HI
Sbjct: 239 MNDKFLLVFTFLKLRLLRGKTIIFVNDVDRCYRVKLFLEQFGIRACVLNSELPQNSRYHI 298
Query: 326 LEEFNAGLFDYLIATDD---------------------TQTKEKDQ-------------- 350
++EFN G++DY+IATD+ +T E D
Sbjct: 299 VQEFNRGVYDYIIATDEHDSNSQVDDSDSDSDNDEEESNETAETDTVEAVFENDDDAEQA 358
Query: 351 ---------------SDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQ 395
+ +G K K KA DSE+GV RGIDF+NV VINF+ P+
Sbjct: 359 TTTATASAEPVATAAASKGKAQQRPKRKAGRKAGADSEYGVARGIDFQNVSNVINFDFPE 418
Query: 396 NAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQN 455
A YVHR+GRT R +G S+SL++P++ ++ + ++ + F A +
Sbjct: 419 TARSYVHRVGRTARGDKSGQSLSLIAPEDEGRLAIVQRKLS--KHNSGHKFQQFQ-FAMH 475
Query: 456 AVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLS 515
+ + RYRA D ++VT +V+E+R ++++NEI NS+KLKA+FE NPKDL+ L+HDK
Sbjct: 476 EIAAFRYRAADALRAVTAASVKEARLKEIKNEIFNSQKLKAYFEDNPKDLEALRHDKPSH 535
Query: 516 KKPPASHLRDVPDYLL----------------------DAKTQEACKMVKLARAAMGNKN 553
+HL+ +P YL+ D + E + AA K
Sbjct: 536 PARIQAHLKHIPSYLMPESLMKKKLAPAATSEAAAMAVDGEAAEEAPEAEEDLAASEPKP 595
Query: 554 SSRRQG--PRRKFR---KSDPLKSFSAEPTKRAGKG 584
+++ +G P R + K+DPLKSF+A P+KR +G
Sbjct: 596 NTKHRGKQPHRGMKRPAKADPLKSFAANPSKRFAQG 631
>gi|291228064|ref|XP_002734002.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 56-like
[Saccoglossus kowalevskii]
Length = 566
Score = 393 bits (1009), Expect = e-106, Method: Compositional matrix adjust.
Identities = 221/533 (41%), Positives = 320/533 (60%), Gaps = 43/533 (8%)
Query: 20 AEAEEEK-SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTF 78
AE E + +F E+GLD RL+ A+ + G KPTLIQ+ +IPL LEGKD++ARA+TGSGKT
Sbjct: 2 AEVEADSLNFHEMGLDDRLLKAIAQLGWAKPTLIQERAIPLALEGKDLLARARTGSGKTA 61
Query: 79 AYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLT 138
A+ +PL+ R+ ++ + AL+L P++EL Q + Q K
Sbjct: 62 AFAIPLIQRILISKQTATEQSIKALILTPSKELSNQASHHI---------QTPPKSQFHR 112
Query: 139 SSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGY 198
S P +R L PDI++ TP + L+ ++ +SL++LV+DEADLL S+GY
Sbjct: 113 SDFPKDSVRPLLIEKPDIIVGTPS---RVLAHIQAKNIYLKESLEMLVIDEADLLFSFGY 169
Query: 199 EDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-- 256
E+D+K L +P+ Q LMSAT S++V+ LKKL+LHNP IL L E +P++
Sbjct: 170 ENDVKTLLRHLPKIFQAFLMSATLSNEVETLKKLVLHNPVILKLQESQ------LPESDR 223
Query: 257 VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAE 316
+ Q+ I C DK L I TL+KL+L++ K +IF N ID +RLKLFLE+F I S +LN+E
Sbjct: 224 LLQYHIKCKAEDKFLLIYTLIKLKLIRGKTIIFVNKIDRCYRLKLFLEQFSIASCVLNSE 283
Query: 317 LPQNSRLHILEEFNAGLFDYLIATDDT-----------------QTKEKDQSDEGGHVDS 359
LP NSR HI+ + N G +D +IA+D++ T E D+SD
Sbjct: 284 LPVNSRCHIVNQVNEGFYDIVIASDESVLSMPDDKLDELDEIPDATVEADESDNKKKKRK 343
Query: 360 RKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSL 419
K K E+GV RGIDF+NV V+NF+ P Y+HR+GRT R + G ++S
Sbjct: 344 GKKLSKTMMKKVKEYGVSRGIDFQNVSNVLNFDFPPTVDAYIHRVGRTARGFKMGTALSF 403
Query: 420 VSPDEMKIFEEIKSFV-GDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRE 478
V+ E+ + ++ + + GDDE + P+ + +E RYRA+D ++VTK+AV+E
Sbjct: 404 VNYSEIHLLQQAEMILSGDDE---VPAVKPYQFKMEE-IEGFRYRAKDAMRAVTKVAVKE 459
Query: 479 SRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 531
+R Q+++NEI+NS+KLK +FE NP+DL LL+HDK L SHLR VPDYL+
Sbjct: 460 ARLQEIKNEIMNSQKLKTYFEDNPRDLQLLRHDKVLHPAKVQSHLRHVPDYLV 512
>gi|148231338|ref|NP_001084622.1| DEAD (Asp-Glu-Ala-Asp) box helicase 56 [Xenopus laevis]
gi|46249840|gb|AAH68749.1| MGC81243 protein [Xenopus laevis]
Length = 552
Score = 393 bits (1009), Expect = e-106, Method: Compositional matrix adjust.
Identities = 235/556 (42%), Positives = 332/556 (59%), Gaps = 19/556 (3%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F ELGLD RL+ ++ G KPTLIQ+ +IPL LEGKD++ARA+TGSGKT +Y +P++
Sbjct: 6 FHELGLDDRLLKSIADLGWAKPTLIQEKAIPLALEGKDLLARARTGSGKTASYSIPIIQN 65
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
L S+ A ++LVPT+EL QQV + L C + KV ++ S R
Sbjct: 66 LLQAKMMVSEQAIRVIILVPTKELGQQVQQMIRQLTVYCARDI--KVADISGQADISAQR 123
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
L PDIV+ TP + L+ Q+ D+L+ LV+DEADL+ S+G+E+DLK L
Sbjct: 124 PILMEKPDIVVGTPS---RVLTHITQQTICVRDTLQALVIDEADLIFSFGFEEDLKNLLC 180
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ--QFWISCS 265
+P+ Q LMSAT S DV LK+L+LHNP L L E +P + Q Q+ I C
Sbjct: 181 QLPKIFQSFLMSATFSEDVQALKELVLHNPVTLKLEE------SQLPDSSQLTQYHIQCE 234
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
E DK L + TLLKL LV+ K +IF N +D ++RLKLFLE+F I + +LN+ELP +SR HI
Sbjct: 235 EEDKFLLLYTLLKLSLVRGKTIIFVNEVDRSYRLKLFLEQFSIPACVLNSELPIHSRCHI 294
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
+ +FN G +DY+IATD+ D S +G + +K + D E+GV RGIDF+NV
Sbjct: 295 ISQFNQGFYDYIIATDEQSL--ADPSVKGRRGEGKKKGGRGQKGQDKEYGVSRGIDFQNV 352
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNI 445
TV+NF+ PQ+ Y+HR GRT RA N G +++ V+ E+ + ++ +G D +
Sbjct: 353 STVLNFDFPQSVDSYIHRAGRTARANNPGVALTFVAHTELPLLAGVEEALGGGV-PDEYV 411
Query: 446 IAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDL 505
+ P+ + VE RYR D +SVTK A++E+R ++++ E+LNSEKLK +FE NP+D
Sbjct: 412 LKPYRFCMEE-VEGFRYRCRDAMRSVTKQAIKEARLKEIKEELLNSEKLKTYFEDNPRDF 470
Query: 506 DLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARA-AMGNKNSSRRQGPRRKF 564
LL+HDK L HL++VPDYL+ + + R N SS QG R KF
Sbjct: 471 QLLRHDKPLHPAIVKPHLKNVPDYLIPPTLRAVADLHNRKRKRKRPNAVSSGFQGTRSKF 530
Query: 565 -RKSDPLKSFSAEPTK 579
R +PL+SF +K
Sbjct: 531 QRGQNPLRSFKYAKSK 546
>gi|119190623|ref|XP_001245918.1| hypothetical protein CIMG_05359 [Coccidioides immitis RS]
Length = 607
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 239/603 (39%), Positives = 350/603 (58%), Gaps = 68/603 (11%)
Query: 25 EKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPL 84
EK+FE L LD RL+ AL K+ KPTL+Q +IPL+L GKDV+ GSGKT AYLLP+
Sbjct: 22 EKTFETLHLDPRLLQALTKQKFTKPTLVQAEAIPLVLSGKDVL-----GSGKTAAYLLPI 76
Query: 85 LHRLFNE--SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMP 142
L + + ++P K + +AL+LVPTREL +QV + V++ C + + LT +
Sbjct: 77 LQSILQKKIANPTQK-SISALILVPTRELAEQVQNAVVSFSSFCGKDI--RSANLTQKVS 133
Query: 143 ASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 202
+ RA LA PDI+I+TP + + S S +D L LV+DEADL+LSYGYE D+
Sbjct: 134 DAVQRAILADLPDIIISTPA---RAIINTNSSSLSLND-LTHLVIDEADLVLSYGYEQDM 189
Query: 203 KALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWI 262
+ L+ IPRG Q LLMSAT +S+VD LK L +P IL L E D + QF +
Sbjct: 190 QNLAKAIPRGVQTLLMSATLTSEVDALKGLFCRSPVILKLEEAEDEG-----AGIAQFAV 244
Query: 263 SCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 322
C+E +K L + KL+LV+ K +IF ID ++RLKLFLE+FGIKS +LN+ELP NSR
Sbjct: 245 KCAEDEKFLLTYVIFKLQLVKGKCIIFVGDIDRSYRLKLFLEQFGIKSCVLNSELPVNSR 304
Query: 323 LHILEEFNAGLFDYLIATDD-----------TQTKEKDQSDEGGHVDSRK---------- 361
+H+++EFN G++D +IA DD ++T E+ + G + K
Sbjct: 305 IHVVQEFNKGVYDIIIAADDQEVIGEIPKKGSKTPEQSNGENGDEPEEEKGFSDEDEVEP 364
Query: 362 --SKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSL 419
SKK K+ + ++G+ RGIDF++V V+NF++P A Y HRIGRTGRA TG ++SL
Sbjct: 365 PPSKKRKKSTKEKDYGISRGIDFQDVACVLNFDLPTTAKSYTHRIGRTGRAGKTGMALSL 424
Query: 420 VSPDEMKIFEEIKSF--VGDDENEDSNIIAPFPLLAQNA---------VESLRYRAEDVA 468
+ P E+ + SF +DE + II L + +++ RYR D
Sbjct: 425 IVPSELYGRHKPTSFPTAKNDEAVLAKIIKRQAKLGREVKPYNFDTKQIDAFRYRMTDAL 484
Query: 469 KSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPD 528
++VT++AV+E+R ++++ E+LNSEKLK HFE NP++L L+HD +L +HL+ VP+
Sbjct: 485 RAVTRVAVQEARTKEIKQELLNSEKLKRHFEENPEELRQLRHDGELRPTRVQAHLKHVPE 544
Query: 529 YLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFR---------------KSDPLKSF 573
YL+ AK + + + N +R + R + R K+DPLK+F
Sbjct: 545 YLMPAKGKAGLTSGDIGFVGLRKTNENRIRKARDRNRMRGKGGRKGGRGGGRKADPLKTF 604
Query: 574 SAE 576
++
Sbjct: 605 KSK 607
>gi|340519870|gb|EGR50107.1| predicted protein [Trichoderma reesei QM6a]
Length = 633
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 239/595 (40%), Positives = 343/595 (57%), Gaps = 60/595 (10%)
Query: 22 AEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYL 81
++E+K+F +LGLD RLV A+ ++ KPTL+Q+ +IPL L+GKDV+ +AKTGSGKT AY+
Sbjct: 53 SDEDKTFADLGLDARLVQAVAQQKFLKPTLVQRRAIPLALDGKDVLCKAKTGSGKTAAYV 112
Query: 82 LPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSM 141
LP+L + + S A AL+LVPTREL QV+ + C V + V+LT +
Sbjct: 113 LPVLAGILKKKSVDPTPATTALILVPTRELADQVFKSIELFSAFCAKDV--RAVKLTDKL 170
Query: 142 PASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYED 200
+ R+ L+ PDIVI+TP + S + S D L LVLDEADLLLSYGY +
Sbjct: 171 TDAVQRSLLSTCPDIVISTPA---RAWHNVNGNSGALSLDKLAYLVLDEADLLLSYGYSE 227
Query: 201 DLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHN--PYILTLPEVGDVKDEVIPKNVQ 258
DL++LS +P+G Q ++MSAT +++VD LKK+ + P +L L E D + E V
Sbjct: 228 DLESLSFSLPKGIQTIMMSATLTTEVDSLKKIFYRDQQPTLLDLEE-PDAEGE----GVT 282
Query: 259 QFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELP 318
Q C E +K L I + KL+LV+ K +IF ID +RLKL+ E+FGI+S ILN+ELP
Sbjct: 283 QLVTKCGEDEKFLLIYVIFKLQLVKGKCIIFVADIDRCYRLKLYFEQFGIRSCILNSELP 342
Query: 319 QNSRLHILEEFNAGLFDYLIATDDTQT---------------KEKDQSDEGGHVDSRKSK 363
NSR+H++EEFN +D +IA+D+ + + + EGG ++
Sbjct: 343 VNSRIHVVEEFNRNAYDIIIASDEKEVLGNEEKAEEEQEDEAMDDGEVKEGGRPKKKRKA 402
Query: 364 KHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPD 423
D E+GV RGIDFKNV VINF++P +A+ Y HRIGRT RA G ++S V P
Sbjct: 403 AKG----DVEYGVSRGIDFKNVAAVINFDLPTSASSYTHRIGRTARAGRAGMALSFVVPK 458
Query: 424 EMKIFEEIKSFVGDDENEDSNIIA--------------PFPLLAQNAVESLRYRAEDVAK 469
++ + I + EN D I+A P+ + VE+ RYR D +
Sbjct: 459 DL-YRKHIHTSTPSAEN-DEKILARITKQQAKKGKELKPYN-FNKEQVEAFRYRMNDALR 515
Query: 470 SVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDY 529
+VTK+A+RE+R ++LR E+L SEKLK +FE NP +++ L+HD +L +HL+ VPDY
Sbjct: 516 AVTKVAIREARTRELRQELLKSEKLKRYFEENPSEMNHLRHDGELRTARQQAHLKHVPDY 575
Query: 530 LLDAKTQEACKMVKLARAAMGNKNSSRR---------QGPRRKFRKSDPLKSFSA 575
LL + ++A + M K RR + + RK DPLK+F A
Sbjct: 576 LLPKEGRQALTAGDVGFVPM--KRFDRRAGTKRKGGKKSGKAGVRKGDPLKTFKA 628
>gi|302884336|ref|XP_003041064.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256721960|gb|EEU35351.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 607
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 235/605 (38%), Positives = 346/605 (57%), Gaps = 49/605 (8%)
Query: 3 KSKEIPSKEVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILE 62
K+ E P+ E + + + + EEE SF +LGLD RL+ A+ ++ KPTL+Q+ +IPL L
Sbjct: 15 KAAEKPT-ETQVEKPAQQQQEEETSFADLGLDPRLLQAVAQQKFAKPTLVQRKAIPLALN 73
Query: 63 GKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMAL 122
G+DV+A+A GSGKT AY+LPLL + + S +AL+LVPTREL QV+ +
Sbjct: 74 GQDVLAKADCGSGKTAAYVLPLLSSILKRKTTDSTAFTSALILVPTRELADQVFKAIEQF 133
Query: 123 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSL 182
C + V+LT + + RA L+ PDIVI+TP +++ L D L
Sbjct: 134 ASFCAKDIS--TVKLTDKVSNAVQRALLSNSPDIVISTPATAWHNVNSSALS----LDKL 187
Query: 183 KILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL 242
LVLDEADL+LSYGY +DL+ LS +P+G Q ++MSAT + +VD LK + +P +L L
Sbjct: 188 THLVLDEADLVLSYGYSEDLENLSRSVPKGVQVMMMSATLTDEVDTLKGIFRRDPTLLDL 247
Query: 243 PEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLF 302
E E + + QF C E +K L + KL L++ K +IF + ID +RLKLF
Sbjct: 248 KE-----KEAEGEGITQFVAKCGEDEKFLLAYVIFKLRLIKGKCIIFVSDIDRCYRLKLF 302
Query: 303 LEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKD------------- 349
E+FGI+S ILN+ELP NSR+H++EEFN ++D +IA D+ D
Sbjct: 303 FEQFGIRSCILNSELPLNSRVHVVEEFNRNVYDIIIAADEKNDMLGDDEVAEGEEAKEKA 362
Query: 350 QSDEGGHVDS-RKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTG 408
+ D+ V++ R KK K+K D E+GV RG+DFK V VINF++P A+ Y HRIGRT
Sbjct: 363 EGDDDAEVEAKRPKKKAKKSKGDKEYGVSRGVDFKKVSAVINFDLPTTASSYTHRIGRTA 422
Query: 409 RAYNTGASVSLVSPDEM------------KIFEEIKSFVGDDENEDSNIIAPFPLLAQNA 456
RA TG ++S V P E+ + E++ + + + + + P+ +
Sbjct: 423 RAGQTGMALSFVVPKELYRKHVPTSTPTAEKDEKVMAKIIRQQAKRGKEVKPYNFNMEQ- 481
Query: 457 VESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSK 516
V+ RYR D ++VTK+A+RE+R ++LR E+L SEKLK +FE NP +L L+HD +L
Sbjct: 482 VDPFRYRMNDALRAVTKVAIREARTRELRQELLKSEKLKRYFEENPTELTHLRHDGELRT 541
Query: 517 KPPASHLRDVPDYLLDAKTQEACK------MVKLARAAMGNKNSSRRQGPRRKFRKSDPL 570
+HL+ VP+YLL ++A ++ R G K + G R++ DPL
Sbjct: 542 ARQQAHLKHVPEYLLPKDGKQALTKDIGFVAMRKDRKVKGKKGRGFKVGSRKR----DPL 597
Query: 571 KSFSA 575
K+F A
Sbjct: 598 KTFKA 602
>gi|187607828|ref|NP_001120553.1| DEAD (Asp-Glu-Ala-Asp) box helicase 56 [Xenopus (Silurana)
tropicalis]
gi|171846295|gb|AAI61488.1| LOC100145707 protein [Xenopus (Silurana) tropicalis]
Length = 552
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 238/563 (42%), Positives = 335/563 (59%), Gaps = 25/563 (4%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F ELGLD RL+ ++ G KPTLIQ+ +IPL LEGKD++ARA+TGSGKT AY +P++
Sbjct: 6 FHELGLDDRLLKSIADLGWAKPTLIQEKAIPLALEGKDLLARARTGSGKTAAYSIPIIQN 65
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
L S+ A L+LVPT+EL QQV + L C + KV ++ S R
Sbjct: 66 LLQAKMTVSEQAIRVLILVPTKELGQQVQQMIRQLTVYCARDI--KVADISGQADISAQR 123
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
L PDIV+ TP + L+ Q+ D+L+ LV+DEADL+ S+G+E+DLK L
Sbjct: 124 PILMEKPDIVVGTPS---RVLTHMTQQTICVRDTLQALVIDEADLVFSFGFEEDLKNLLC 180
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ--QFWISCS 265
+P+ Q LMSAT S DV LK+L+LHNP L L E P + Q QF I C
Sbjct: 181 QLPKIFQSFLMSATFSEDVQALKELVLHNPVTLKLEE------SQFPDSSQLTQFHIQCE 234
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
E DK L + TLLKL L++ K +IF N +D ++RLKLFLE+F I + +LN+ELP +SR HI
Sbjct: 235 EEDKFLLLYTLLKLSLIRGKTIIFVNEVDRSYRLKLFLEQFSIPACVLNSELPIHSRCHI 294
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
+ +FN G +DY+IATD+ D S +G + +K + D E+GV RGIDF+NV
Sbjct: 295 ISQFNQGFYDYIIATDEHSL--ADPSVKGRRGEGKKKGGKGQKGQDKEYGVSRGIDFQNV 352
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNI 445
TV+NF+ PQ+ Y+HR GRT RA N G +++ V+ E+ + E++ +G D ++
Sbjct: 353 STVLNFDFPQSVDSYIHRAGRTARANNPGVALTFVAHTELPLLSEVEEALGGG-VPDEHV 411
Query: 446 IAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDL 505
+ P+ + VE RYR D +SVTK A++E+R ++++ E+LNSEKLK +FE NP+D
Sbjct: 412 LKPYRFCMEE-VEGFRYRCRDAMRSVTKQAIKEARLKEIKEELLNSEKLKTYFEDNPRDF 470
Query: 506 DLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKM----VKLARAAMGNKNSSRRQGPR 561
LL+HDK L HL++VP+YL+ + + K + GN QG R
Sbjct: 471 QLLRHDKPLHPAIVKPHLKNVPEYLIPPALRAVADIHNRKRKRRKLKAGNLGF---QGTR 527
Query: 562 RKF-RKSDPLKSFSAEPTKRAGK 583
KF R +PL+SF +KR K
Sbjct: 528 SKFQRGQNPLRSFKYAKSKRRRK 550
>gi|409040682|gb|EKM50169.1| hypothetical protein PHACADRAFT_166739 [Phanerochaete carnosa
HHB-10118-sp]
Length = 585
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 220/528 (41%), Positives = 328/528 (62%), Gaps = 46/528 (8%)
Query: 33 LDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNES 92
LD RL+ AL G +PTL+Q +IPL LE +D++ARA+TGSGKT AY +P++ ++ N +
Sbjct: 20 LDARLLRALADLGFARPTLVQSKAIPLALENRDILARARTGSGKTAAYCIPVVQKILNNT 79
Query: 93 SPKSKLAPA--ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
+ S + + AL+LVPTREL +Q+ + + L+ C +V + ++S R L
Sbjct: 80 AASSSDSQSTRALILVPTRELSEQISAHLRGLVTYCDKEVT--IANVSSGTTHHLQRTLL 137
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL--SAV 208
+ PDIV+ATP K L+ +LQSK+ + LV+DEADL+LSYG+++D++ + S
Sbjct: 138 SDKPDIVVATPS---KALA--LLQSKANT----TLVIDEADLILSYGHDEDVRQIFSSGY 188
Query: 209 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERD 268
+P+ Q LMSAT + DV++LK L L +P IL L E DE N+ Q+ + CSE D
Sbjct: 189 LPKVYQSFLMSATMTDDVEQLKGLALRSPVILKLEE-----DEDEAANLTQYSVRCSEVD 243
Query: 269 KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 328
K L I +LKL L++ K +IF N +D +RLKLFLE+F IKS +LN+ELP NSR H+++E
Sbjct: 244 KFLLIYVILKLRLIKGKCIIFVNDVDRCYRLKLFLEQFSIKSCVLNSELPLNSRYHVVQE 303
Query: 329 FNAGLFDYLIATD--------DTQTKEKD----QSDEGGHVDSRKSKKHPKAKLDSEFGV 376
FN G+++Y+IA+D D +++E+D + D SRK K K + D E+GV
Sbjct: 304 FNKGVYEYIIASDESIKKGEQDVESEEEDAAETKDDNCDQSKSRKRKHRHKGEGDKEYGV 363
Query: 377 VRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE------------ 424
RG+DF +V V+NF++P ++ Y HR+GRT RA +G S+S V P++
Sbjct: 364 TRGVDFVDVSCVVNFDLPPSSRSYTHRVGRTARAGRSGMSLSFVVPEKEWGKNKVVGCVE 423
Query: 425 -MKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQD 483
K E+I + + ++ + I + + VE+ RYR ED ++VT+ AVRE+R ++
Sbjct: 424 STKKDEKISARIEAEQAARGSKIKEYKFDMKQ-VEAFRYRMEDALRAVTRSAVREARIKE 482
Query: 484 LRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 531
L+ EILNS+KLKAHFE NP DL+ L+HDK L SH++ VP Y+L
Sbjct: 483 LKTEILNSDKLKAHFEDNPLDLEYLRHDKPLHPARVQSHMKHVPKYML 530
>gi|255648393|gb|ACU24647.1| unknown [Glycine max]
Length = 268
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 192/241 (79%), Positives = 213/241 (88%)
Query: 306 FGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKH 365
FGI+SA+LN ELPQNSRLHILEEFNAGLFDYLIATD +Q+KEKD+ + +V S KS++H
Sbjct: 23 FGIRSAVLNPELPQNSRLHILEEFNAGLFDYLIATDLSQSKEKDEVPKESNVGSWKSRQH 82
Query: 366 PKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM 425
K KLDSEFGVVRGIDFKNV+TVINFEMP++ AGYVHRIGRTGRAYN+GASVSLVS DEM
Sbjct: 83 AKIKLDSEFGVVRGIDFKNVYTVINFEMPESVAGYVHRIGRTGRAYNSGASVSLVSTDEM 142
Query: 426 KIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLR 485
EEI+SFV DDEN+ +N IA FPLL +NAVESLRYRAEDVAKSVT+IAVRESRAQDLR
Sbjct: 143 DTLEEIRSFVRDDENKGTNSIAEFPLLTKNAVESLRYRAEDVAKSVTRIAVRESRAQDLR 202
Query: 486 NEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLA 545
NEILNSEKLKAHFE NPKDLDLLKHDK LSK PP HLRDVP+YLLD T+EA +MVKLA
Sbjct: 203 NEILNSEKLKAHFETNPKDLDLLKHDKVLSKNPPPPHLRDVPEYLLDKPTKEAREMVKLA 262
Query: 546 R 546
R
Sbjct: 263 R 263
>gi|327349068|gb|EGE77925.1| ATP-dependent RNA helicase DBP9 [Ajellomyces dermatitidis ATCC
18188]
Length = 607
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 229/615 (37%), Positives = 345/615 (56%), Gaps = 57/615 (9%)
Query: 5 KEIPSKEVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGK 64
+++ + V E+ + SFE L LD RL+ AL ++ KPTLIQ +IPL L+GK
Sbjct: 3 RKLDANNVPSPEDSAEKNNTAHSFENLNLDPRLLQALTQQKFTKPTLIQAEAIPLALDGK 62
Query: 65 DVVARAKTGSGKTFAYLLPLLHRLFNESS--PKSKLAPAALVLVPTRELCQQVYSEVMAL 122
DV+ARAKTGSGKT AYLLP+L + + + P K A + L+LVPTREL +QV+ V +
Sbjct: 63 DVLARAKTGSGKTAAYLLPILQSILQKKTNDPTHK-AISTLILVPTRELAEQVHKTVTSF 121
Query: 123 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSL 182
+ + LT + + R+ LA PDIVI+TP +++ L + +
Sbjct: 122 SAFAGKDI--RSTNLTQKVSDAVQRSILADLPDIVISTPARAVVNINSSALTLQHLTH-- 177
Query: 183 KILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL 242
LV+DEADL+LSYGYE+D+++L+ +PRG Q LMSAT +S+VD LK L NP +L L
Sbjct: 178 --LVIDEADLVLSYGYEEDMQSLAKAVPRGVQAFLMSATFTSEVDALKGLFCRNPVVLKL 235
Query: 243 PEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLF 302
E D + QF + C+E +K L + KL+LV+ K +IF +D +RLKLF
Sbjct: 236 EEKEDEG-----AGISQFVVRCAEDEKFLLTYVIFKLQLVKGKCIIFVGDVDRCYRLKLF 290
Query: 303 LEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGG------- 355
LE+FGI+S +LN+ELP NSR+H+++EFN G+ + ++ E++ D G
Sbjct: 291 LEQFGIRSCVLNSELPVNSRIHVVQEFNKGVKPSRKSDQSSKDPEQENDDGSGVKTTNNY 350
Query: 356 -------HVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTG 408
+R SK+ K+ + ++G+ RGIDF++V V+NF++P N+ Y HRIGRTG
Sbjct: 351 LQDSSEDETKARPSKRPKKSAKEKDYGISRGIDFQDVACVLNFDLPTNSKSYTHRIGRTG 410
Query: 409 RAYNTGASVSLVSPDEMKIFEEIKSFVGDDENED------------SNIIAPFPLLAQNA 456
RA TG ++S V P + + SF +E + P+ +
Sbjct: 411 RAGKTGMALSFVVPSDQFGKHKPTSFSSAKHDEAVLGKIIKRQGKLGREVKPYHFEMKQ- 469
Query: 457 VESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSK 516
V++ RYR D ++VT++AV+E+RA+++R E++ SEKLK HFE NP++L L+HD +L
Sbjct: 470 VDAFRYRMSDALRAVTRVAVQEARAREIRQELVKSEKLKRHFEENPEELRQLRHDGELRA 529
Query: 517 KPPASHLRDVPDYLLDAKTQEACKMV----------------KLARAAMGNKNSSRRQGP 560
+HL+ VPDYL+ K + ++ +A N+ R
Sbjct: 530 ARVQAHLKHVPDYLMPTKGKGGLSSGPAGDVGFVGFRKTHENRIRKARERNRGRGRPAKA 589
Query: 561 RRKFRKSDPLKSFSA 575
R +K DPLKSF++
Sbjct: 590 GRGGKKVDPLKSFNS 604
>gi|443726609|gb|ELU13728.1| hypothetical protein CAPTEDRAFT_150704 [Capitella teleta]
Length = 549
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 220/557 (39%), Positives = 335/557 (60%), Gaps = 28/557 (5%)
Query: 21 EAEEEK--SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTF 78
E +EEK F E+GLD R++ A+ K G PTLIQ+ +IPL L GKD++ARA+TGSGKT
Sbjct: 2 EEQEEKLIEFHEMGLDDRILKAVAKLGWMHPTLIQEKAIPLALNGKDILARARTGSGKTA 61
Query: 79 AYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLT 138
AY++P+L ++ + S+ AL+L PTRELC QV + L C +V + ++
Sbjct: 62 AYVIPVLQKILSSKLTASEQCIRALILTPTRELCNQVSKNIAELCLSCSREV--STIDIS 119
Query: 139 SSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGY 198
M + LA PDIV++TP + L G L S +SL+ LV+DEADL+ S+GY
Sbjct: 120 GQMSLESQKPMLAEKPDIVVSTPSRILLHLQAGTL---SLKESLEFLVIDEADLVFSFGY 176
Query: 199 EDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-- 256
E DL+A+ + +PR Q LMSAT S DV LK ++LHN IL L +D +P +
Sbjct: 177 ESDLQAIKSYLPRIYQAFLMSATLSEDVKSLKSMVLHNAVILKL------EDSSLPTSAK 230
Query: 257 VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAE 316
+ Q+ I C E +K + + ++LKL L++ K L+F NT+D +RLKLFLE+F I S +LN+E
Sbjct: 231 LSQYHIRCEEDEKYVILYSMLKLRLIRGKTLLFVNTVDKCYRLKLFLEQFQIASCVLNSE 290
Query: 317 LPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGV 376
LP NSR HI+ +FN+G +D +IA+D+ + + K K D E G+
Sbjct: 291 LPVNSRCHIVSQFNSGFYDIIIASDEVALETPSEV---------KKTKKKTKGKDKESGI 341
Query: 377 VRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
RGIDF+ V VINF++P +A Y+HR+GRT R N G ++S ++ + + EI++ +
Sbjct: 342 SRGIDFQYVSNVINFDLPLDADSYIHRVGRTARGDNEGTALSFIAVKDQERQMEIEAALS 401
Query: 437 DDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKA 496
D + ++ P+ L +E +YRA+D K+VTK+AV+ +R +++ E+LNS+KLK
Sbjct: 402 DGLPKGEQVLKPY-LFKMKEIEGFQYRAQDALKAVTKVAVKNTRMNEIKKELLNSQKLKL 460
Query: 497 HFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSR 556
+F+ NP+D +L+HD+ + K HL++VP+YL+ ++ K R + SR
Sbjct: 461 YFKDNPRDQQVLRHDRRSTNKVQG-HLQNVPNYLVPPTLRKYNLGSKGRRQPKAAASISR 519
Query: 557 RQGPRRKFRKSDPLKSF 573
P RK + ++PL +F
Sbjct: 520 --APSRKRQAANPLNTF 534
>gi|449297989|gb|EMC94006.1| hypothetical protein BAUCODRAFT_112682 [Baudoinia compniacensis
UAMH 10762]
Length = 624
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 240/618 (38%), Positives = 345/618 (55%), Gaps = 84/618 (13%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
+F +L +D RL+ A+N++ PT +Q +IPL L G+DV+ARAKTGSGKT AYLLP+LH
Sbjct: 28 AFTDLSIDPRLLQAVNREKFAAPTPVQAKTIPLALTGRDVLARAKTGSGKTLAYLLPVLH 87
Query: 87 RLFNESSPKSKL-APAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASD 145
+ + SK+ AL+LVPT+EL Q+ S + C +++ + L+ + A+
Sbjct: 88 GVLRHKAGFSKVRETTALLLVPTKELAAQITSTLKTFTSYCTQEIRYE--NLSKTEDAAV 145
Query: 146 LRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL 205
+A LA PDIV+ATP ++ +L+S D LK LV+DEADL+LSYGYE+DL+ L
Sbjct: 146 TKARLAETPDIVVATPARAVYWMNQSLLKS----DRLKYLVIDEADLVLSYGYEEDLQTL 201
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK--NVQQFWIS 263
+A +P G Q L+MSAT +++D L + + T PE+ D+ E + + Q+ I
Sbjct: 202 AAALPNGVQKLMMSATLRTEIDTLNSVFFADG---TKPEILDLSAEEAAEKPTLAQYTIR 258
Query: 264 CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
E DK L I T+ KL+L++ K ++F I+ +R+KLFLE+FGI+S +LN+ELP NSRL
Sbjct: 259 TGEADKFLLIYTIFKLQLIKGKVILFVADIERCYRVKLFLEQFGIRSVVLNSELPVNSRL 318
Query: 324 HILEEFNAGLFDYLIATDDTQT---------KEKDQSDEGGHVDSRKSKKHP-------- 366
H +EEFN G++D ++A D+ + + K + +E R S + P
Sbjct: 319 HAVEEFNKGVYDIIVAADEEEVVGQEEAKRKRRKLEIEEDVEGQERPSAEQPPDEESIHH 378
Query: 367 ----------KAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGAS 416
+ + D EFGV RGIDF+NV V+NF++P + Y HRIGRT RA TG +
Sbjct: 379 EVKQAANVRKRNRRDREFGVSRGIDFRNVTCVLNFDLPTTSKSYTHRIGRTARAGQTGMA 438
Query: 417 VSLVSPDEM----------------KIFEEIK---SFVGDDENEDSNIIAPFPLLAQNAV 457
+S P + +I E I+ + VG E + +A +
Sbjct: 439 LSFYVPKDQYRKHKSTSIPQTEHDERILERIRKRQASVGGSIQEWNFDMAK--------L 490
Query: 458 ESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKK 517
E RYR D ++VT+IAVRE+R ++LR ++NSEKLK HFE NP+DL L+HD +
Sbjct: 491 EPFRYRFNDALRAVTRIAVREARTKELRQALINSEKLKRHFEENPEDLRHLRHDAETHAV 550
Query: 518 PPASHLRDVPDYLLDAKTQEAC-KMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSFSAE 576
HL+ VPDYLL A ++A K V G +NS R+ RR F KS
Sbjct: 551 RRQEHLKHVPDYLLPAGGRQAVSKDVGFVGLKSGTENSLRK---RRAFNKS--------- 598
Query: 577 PTKRAGKGRMKREGRNGD 594
GKGRM R GR D
Sbjct: 599 ----RGKGRMMR-GRGMD 611
>gi|301122249|ref|XP_002908851.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262099613|gb|EEY57665.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 609
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 226/553 (40%), Positives = 331/553 (59%), Gaps = 29/553 (5%)
Query: 30 ELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLF 89
E GLD RL A+ K TL+Q IPL L+GKD++ RA+TGSGKT A+ LPLLH++
Sbjct: 21 EFGLDRRLTKAVAKMRFVHATLVQVHCIPLALQGKDLLVRARTGSGKTAAFALPLLHKIL 80
Query: 90 N--ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+ +P S+ A ALVLVPT+EL +Q +M L+ C+ V L + SM A +
Sbjct: 81 QHKQDTPASEPAVRALVLVPTKELVEQTRRHMMDLMYYCQDTVSLLALG-GQSMNAQ--Q 137
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
A L PD+++ATPG + L G L + DS++ +V+DEADL+LS+GY +D++ +
Sbjct: 138 ALLRDAPDVLVATPGRLVAHLEAGNL---TLKDSVQTVVIDEADLVLSFGYGEDIRTIFN 194
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 267
+P+ CQ MSAT S +++KLK+ +LHNP ++ L E +QQF++
Sbjct: 195 ALPKACQTFCMSATLSPELEKLKRSVLHNPAVVKLEE------GATDGKLQQFYLPVKAS 248
Query: 268 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 327
DK L + LL+L +V K + F N+ D A+RLKLF E+F IKSA+LNA+LP NSR HI+E
Sbjct: 249 DKDLLLYALLRLGVVSGKVIFFVNSTDAAYRLKLFFEQFVIKSAVLNAKLPHNSRQHIIE 308
Query: 328 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 387
EFN GLFDYLIATDD+ +++ ++ G R D +GV RG+DF+ V
Sbjct: 309 EFNRGLFDYLIATDDSVDRDEQETKAVGSKRGRAD--------DESYGVSRGVDFRGVQF 360
Query: 388 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDE---NEDSN 444
VIN + P++ Y HRIGRT R +G ++SLVS ++ K +K + +E ++
Sbjct: 361 VINVDFPKSVRAYTHRIGRTARGGASGTALSLVSKEDAKEERALKRVQAKQQAVLSETND 420
Query: 445 IIAPFPLLAQN--AVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNP 502
+IA LA + ++ RYR EDV ++VT++AVRE++ D++ E+LNS++L AHF+ NP
Sbjct: 421 VIAQPAELAFDLKEIDCFRYRVEDVRRAVTRVAVREAQLADVKKEMLNSDRLAAHFQANP 480
Query: 503 KDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRR 562
+DL++L+HDK + P HL +PDYL+ + Q + NK G RR
Sbjct: 481 RDLNMLEHDKVVGSAPVQPHLATIPDYLVPTELQPPAPGRTKKKLNKHNKRQRLADGKRR 540
Query: 563 KFRKSDPLKSFSA 575
+DPL +F A
Sbjct: 541 T--DNDPLHTFVA 551
>gi|321462909|gb|EFX73929.1| hypothetical protein DAPPUDRAFT_109408 [Daphnia pulex]
Length = 541
Score = 390 bits (1002), Expect = e-105, Method: Compositional matrix adjust.
Identities = 220/564 (39%), Positives = 328/564 (58%), Gaps = 35/564 (6%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
+ LD RL+ A+ K G PTLIQ+ IPL LEGKDV+A+ +TGSGKT + +P++ +
Sbjct: 1 MNLDDRLLKAIAKLGWVSPTLIQEKGIPLFLEGKDVLAKGRTGSGKTAVFAIPIIQNILT 60
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
E + AL+L PT+ELCQQ++ + C V +V + S S + L
Sbjct: 61 EKQTAKEQVTRALILAPTKELCQQLHKAFQSFTTSCSRDVS--IVNVGSQTAISGQKTLL 118
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 210
A PDI+IATP + L + L K DSL+ V+DEADL+ S+G+E+DLK++ +P
Sbjct: 119 AAHPDIIIATPSTILVHLVSKKLVLK---DSLQFFVIDEADLVFSFGFEEDLKSVLGYLP 175
Query: 211 RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-VQQFWISCSERDK 269
QC+L SAT D+ LK+L+LH P L L E E+ P + + Q+ I E DK
Sbjct: 176 TDYQCVLTSATLGDDIQSLKQLVLHQPVTLKLEE-----PELPPASQLTQYQIYAEESDK 230
Query: 270 LLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 329
+ I L KL LV+ K +IF +D ++LKL+L++FGI S LN ELP NSR HI+++F
Sbjct: 231 AVLIYALFKLGLVRGKTIIFVRNVDRCYKLKLYLQQFGIPSCALNGELPVNSRCHIVQQF 290
Query: 330 NAGLFDYLIATDDTQTKE-----KDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 384
NAG++D +IA+D++ ++ DQS++G K K D E GVVRGIDF+
Sbjct: 291 NAGIYDIIIASDESTLEDPNYASADQSNKG------------KRKNDKESGVVRGIDFQF 338
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD--DENED 442
V VINF+ P + Y+HR+GRT R N G ++S VS E + E ++ + D +D
Sbjct: 339 VSNVINFDFPSDVDSYIHRVGRTARGNNKGTALSFVSVREKYLMERVEEHLQDWVPPGQD 398
Query: 443 SNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNP 502
S + P+ + +E+ RYR++D K+VT+IAVRE+R ++++E++ S+KL++HFE NP
Sbjct: 399 S-VFKPYQFRMEE-IEAFRYRSQDAWKTVTRIAVREARLAEIKSEMMQSKKLRSHFENNP 456
Query: 503 KDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMV-KLARAAMGNKNSSRRQGPR 561
D+ +L+HDK L SHL+DVPDY++ + K AR + R
Sbjct: 457 NDMGILRHDKALHTVRIQSHLKDVPDYIIPPTLRRLAKASGHKARGGQSSHGEGRTGKNE 516
Query: 562 RKF--RKSDPLKSFSAEPTKRAGK 583
+ F RK +PL +F + K+ +
Sbjct: 517 KSFLKRKDNPLLTFEFDGFKKKAR 540
>gi|325093293|gb|EGC46603.1| ATP-dependent RNA helicase DBP9 [Ajellomyces capsulatus H88]
Length = 621
Score = 390 bits (1001), Expect = e-105, Method: Compositional matrix adjust.
Identities = 224/560 (40%), Positives = 332/560 (59%), Gaps = 57/560 (10%)
Query: 19 EAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTF 78
E A + SFE L LD RL+ AL ++ KPT IQ +IPL L+GKDV+ARAKTGSGKT
Sbjct: 14 EDSAGKSSSFETLKLDPRLLQALTQQKFTKPTPIQAEAIPLALDGKDVLARAKTGSGKTA 73
Query: 79 AYLLPLLHRLFNE--SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQ 136
AYLLP+L + + ++P K + +AL+LVPTREL +QV+ + L G+ ++ V
Sbjct: 74 AYLLPVLQSILQQKMNNPTHK-SISALILVPTRELAEQVHRTAI-LFSAFSGK-DVRSVN 130
Query: 137 LTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSY 196
LT + + R+ LA PDIV++TP +++ L + L LV+DEADL+LSY
Sbjct: 131 LTQKVSDAVQRSLLADLPDIVVSTPARAVTNVNSSALSL----ERLTHLVIDEADLVLSY 186
Query: 197 GYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN 256
GYE+D+++L+ +PRG Q LMSAT +S+VD LK L NP +L L E D
Sbjct: 187 GYEEDMQSLAKAVPRGVQTFLMSATFTSEVDTLKGLFCRNPVVLKLEEKEDEG-----AG 241
Query: 257 VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAE 316
+ QF + C+E +K L + KL+LV+ K +IF +D +RLKLFLE+FGI+S +LN+E
Sbjct: 242 ISQFVVRCAEDEKFLLTYVIFKLQLVKGKCIIFVGDVDRCYRLKLFLEQFGIRSCVLNSE 301
Query: 317 LPQNSRLHILEEFNAGLFDYLIATDDT------------QTKEKDQSDEGGHVD------ 358
LP NSR+H+++EFN G++D +IA DD Q ++ DQS D
Sbjct: 302 LPVNSRIHVVQEFNKGVYDIIIAADDQEVLGELRKNSKKQPRKSDQSSRDSEYDGAQPSN 361
Query: 359 ------------SRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGR 406
++ SK+ K+ + ++G+ RGIDF+NV V+NF++P + Y HRIGR
Sbjct: 362 NNDQYSSEDDAETQPSKRPKKSAKEKDYGISRGIDFQNVACVLNFDLPTTSKSYTHRIGR 421
Query: 407 TGRAYNTGASVSLVSPDEM------------KIFEEIKSFVGDDENEDSNIIAPFPLLAQ 454
TGRA +G ++S V P + K E + S + + + + P+ +
Sbjct: 422 TGRAGKSGMALSFVIPSDQFGKHKPTSIPSAKHDEAMLSKIIKRQGKLGREVKPYHFDMK 481
Query: 455 NAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDL 514
V++ RYR D ++VT++AV+E+RA+++R E++ SEKLK HFE NP++L L+HD +L
Sbjct: 482 Q-VDAFRYRMSDALRAVTRVAVQEARAREIRQELVKSEKLKRHFEENPEELRELRHDGEL 540
Query: 515 SKKPPASHLRDVPDYLLDAK 534
+HL+ VPDYL+ K
Sbjct: 541 RAARVQAHLKHVPDYLMPTK 560
>gi|240275931|gb|EER39444.1| ATP-dependent RNA helicase DBP9 [Ajellomyces capsulatus H143]
Length = 621
Score = 390 bits (1001), Expect = e-105, Method: Compositional matrix adjust.
Identities = 224/560 (40%), Positives = 332/560 (59%), Gaps = 57/560 (10%)
Query: 19 EAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTF 78
E A + SFE L LD RL+ AL ++ KPT IQ +IPL L+GKDV+ARAKTGSGKT
Sbjct: 14 EDSAGKSSSFETLKLDPRLLQALTQQKFTKPTPIQAEAIPLALDGKDVLARAKTGSGKTA 73
Query: 79 AYLLPLLHRLFNE--SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQ 136
AYLLP+L + + ++P K + +AL+LVPTREL +QV+ + L G+ ++ V
Sbjct: 74 AYLLPVLQSILQQKMNNPTHK-SISALILVPTRELAEQVHRTAI-LFSAFSGK-DVRSVN 130
Query: 137 LTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSY 196
LT + + R+ LA PDIV++TP +++ L + L LV+DEADL+LSY
Sbjct: 131 LTQKVSDAVQRSLLADLPDIVVSTPARAVTNVNSSALSL----ERLTHLVIDEADLVLSY 186
Query: 197 GYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN 256
GYE+D+++L+ +PRG Q LMSAT +S+VD LK L NP +L L E D
Sbjct: 187 GYEEDMQSLAKAVPRGVQTFLMSATFTSEVDTLKGLFCRNPVVLKLEEKEDEG-----AG 241
Query: 257 VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAE 316
+ QF + C+E +K L + KL+LV+ K +IF +D +RLKLFLE+FGI+S +LN+E
Sbjct: 242 ISQFVVRCAEDEKFLLTYVIFKLQLVKGKCIIFVGDVDRCYRLKLFLEQFGIRSCVLNSE 301
Query: 317 LPQNSRLHILEEFNAGLFDYLIATDDT------------QTKEKDQSDEGGHVD------ 358
LP NSR+H+++EFN G++D +IA DD Q ++ DQS D
Sbjct: 302 LPVNSRIHVVQEFNKGVYDIIIAADDQEVLGELRKNSKKQPRKSDQSSRDSEYDGAQPSN 361
Query: 359 ------------SRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGR 406
++ SK+ K+ + ++G+ RGIDF+NV V+NF++P + Y HRIGR
Sbjct: 362 NNDQYSSEDDAETQPSKRPKKSAKEKDYGISRGIDFQNVACVLNFDLPTTSKSYTHRIGR 421
Query: 407 TGRAYNTGASVSLVSPDEM------------KIFEEIKSFVGDDENEDSNIIAPFPLLAQ 454
TGRA +G ++S V P + K E + S + + + + P+ +
Sbjct: 422 TGRAGKSGMALSFVIPSDQFGKHKPTSIPSAKHDEAMLSKIIKRQGKLGREVKPYHFDMK 481
Query: 455 NAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDL 514
V++ RYR D ++VT++AV+E+RA+++R E++ SEKLK HFE NP++L L+HD +L
Sbjct: 482 Q-VDAFRYRMSDALRAVTRVAVQEARAREIRQELVKSEKLKRHFEENPEELRELRHDGEL 540
Query: 515 SKKPPASHLRDVPDYLLDAK 534
+HL+ VPDYL+ K
Sbjct: 541 RAARVQAHLKHVPDYLMPTK 560
>gi|115384408|ref|XP_001208751.1| hypothetical protein ATEG_01386 [Aspergillus terreus NIH2624]
gi|114196443|gb|EAU38143.1| hypothetical protein ATEG_01386 [Aspergillus terreus NIH2624]
Length = 637
Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust.
Identities = 229/617 (37%), Positives = 339/617 (54%), Gaps = 82/617 (13%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
FE L LD RL AL K+ KPTL+Q +IPL LEGKD++ARAKTGSGKT AY+LP+L
Sbjct: 29 FESLNLDPRLRQALVKEKFTKPTLVQAKAIPLALEGKDILARAKTGSGKTAAYVLPILQT 88
Query: 88 LFNESSPKSKL-------------------APAALVLVPTRELCQQVYSEVMALIELCKG 128
+ + + ++ A L+LVPTREL +QV + + C
Sbjct: 89 ILQKKAVRTVTSSIAIYFLTVPFQNDPSLKATTGLILVPTRELAEQVQNVITTFAAFCGK 148
Query: 129 QVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLD 188
V + V LT + + R LA PD++++TP + L + L ++L LV+D
Sbjct: 149 DV--RSVNLTQKVSDAVQRTMLADYPDLIVSTPSRVIANLGSSALSL----ENLTHLVID 202
Query: 189 EADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDV 248
EADL+LSYGY++D+ AL+ IPRG Q LMSAT +++VD LK L +P IL L + D
Sbjct: 203 EADLVLSYGYDEDINALAKAIPRGVQTFLMSATLTAEVDTLKGLFCRSPVILKLEDKDDQ 262
Query: 249 KDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGI 308
V QF + C+E +K L + KL+L++ K +IF +D +R+KLFLE+FGI
Sbjct: 263 GS-----GVSQFVVKCAEDEKFLLTYVIFKLQLIKGKVIIFVGDVDRCYRVKLFLEQFGI 317
Query: 309 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ---------TKEKDQSDEG----- 354
KS +LN+ELP NSRLH+++EFN G++D +IA D+ + +KE +++D G
Sbjct: 318 KSCVLNSELPVNSRLHVVQEFNKGVYDIIIAADEQEVMGARKSKKSKEAEENDAGEAAGS 377
Query: 355 -------------GHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYV 401
D K+ A D ++G+ RGIDF+NV V+NF++P + Y
Sbjct: 378 SDEDEGEAQKPSTTRSDKPSEKRRKTAGKDKDYGISRGIDFQNVACVLNFDLPTTSKSYT 437
Query: 402 HRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF--VGDDENEDSNI----------IAPF 449
HRIGRTGRA TG ++S V P + + SF DE + I + P+
Sbjct: 438 HRIGRTGRAGKTGMALSFVVPADQFGKHKPTSFPTAKHDETVLAKITKRQAKLGHEVKPY 497
Query: 450 PLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLK 509
+ V++ RYR D +S+T++AV+E+RA+++R E++ SEKLK HFE NP++L L+
Sbjct: 498 HFEMKQ-VDAFRYRMTDALRSITRLAVQEARAREIRQELIKSEKLKRHFEENPEELRQLR 556
Query: 510 HDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFR---- 565
HD +L HL+ +PDYL+ +K ++ + + +R + R K R
Sbjct: 557 HDDELRSARIQPHLKHIPDYLMPSKGKKGISSENVGYVGFRKTSENRIRKAREKNRGKGK 616
Query: 566 --------KSDPLKSFS 574
K DPLK+F+
Sbjct: 617 GRNYAGVKKVDPLKTFN 633
>gi|340939028|gb|EGS19650.1| hypothetical protein CTHT_0041290 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 610
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 234/593 (39%), Positives = 348/593 (58%), Gaps = 50/593 (8%)
Query: 16 EEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSG 75
E+++ + E E SF ELGLD RLV A+ K+ +KPTL+Q+ +IPL L+G+DV+ +AKTGSG
Sbjct: 27 EQQKQQPEPEPSFSELGLDPRLVQAVAKQNFEKPTLVQRKAIPLALKGQDVLCKAKTGSG 86
Query: 76 KTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVV 135
KT AYLLP+L + + A L+LVPTREL QV+ V C +
Sbjct: 87 KTAAYLLPILTSILKRKATDPTPFTAGLILVPTRELADQVFKAVEEFSAFCAKDIH--AA 144
Query: 136 QLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLS 195
+LT ++ + R+ LA PD+V++TP +++ L L+ LVLDEADL+LS
Sbjct: 145 KLTENVSDAVQRSLLANVPDVVVSTPARAWHSVNSSALSLA----KLQFLVLDEADLVLS 200
Query: 196 YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK 255
YGY++D++ LS +P+G Q ++MSAT S ++D LK++ NP IL L E +DE
Sbjct: 201 YGYDEDMENLSRSLPKGVQTIMMSATLSPELDALKEIFCRNPTILDLKEEFGAEDE---- 256
Query: 256 NVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNA 315
+ QF++ C E DK L + KL+L++ LIF ID ++RLKLF E+F I+S +LN+
Sbjct: 257 KLTQFYVKCGEEDKWLIAYLIFKLQLIKGPCLIFVADIDRSYRLKLFFEQFSIRSCVLNS 316
Query: 316 ELPQNSRLHILEEFNAGLFDYLIATDD--------------TQTKEKDQSDEGGHVDSRK 361
ELP N+R+ I+EEFN G++D +IA+D+ + ++ +S +G +++K
Sbjct: 317 ELPINTRIKIIEEFNKGIYDIIIASDERPEAFGEEAAEEGEEEKEKNSKSKDGQ--ENQK 374
Query: 362 SKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS 421
SKK K + D E+GV RGIDFKNV VINF+MP +A+ Y HRIGRT RA G ++S V
Sbjct: 375 SKKKRKYQKDEEYGVSRGIDFKNVAAVINFDMPTSASSYTHRIGRTARAGRAGIALSFVI 434
Query: 422 PDEMKIFEEIKSFVGDDENEDSNIIA--------------PFPLLAQNAVESLRYRAEDV 467
P + F + K + +D ++A P+ Q +E+ RYR D
Sbjct: 435 PKDQ--FGKHKPTMVKSCEKDEKVLAKIIRQQAKLGRKLEPYNFNKQQ-MEAFRYRMTDA 491
Query: 468 AKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSK-KPPASHLRDV 526
++VT+ A+RE+R ++LR E+L SE LK +FE NP +L L+HD +L K +HL+ V
Sbjct: 492 LRAVTRAAIREARTRELRQELLRSEALKRYFEENPTELQHLRHDGELGKGMRHQAHLKHV 551
Query: 527 PDYLL-----DAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKS-DPLKSF 573
PDYLL A T++ V + ++ + + R F+ DPLK+F
Sbjct: 552 PDYLLPKEGKKALTEQQIGFVPFKKLDGKDRRRRKGRPKGRTFKTGKDPLKTF 604
>gi|403216467|emb|CCK70964.1| hypothetical protein KNAG_0F03020 [Kazachstania naganishii CBS
8797]
Length = 598
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 231/599 (38%), Positives = 341/599 (56%), Gaps = 56/599 (9%)
Query: 19 EAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGK-DVVARAKTGSGKT 77
+A +E +FE LD RL+ A+ + G+ PTL+Q +IPL L+ K D++A+A TGSGKT
Sbjct: 11 DAYIDESVTFESFQLDARLLQAVKRAGLHHPTLVQSHAIPLALQQKRDIIAKAATGSGKT 70
Query: 78 FAYLLPLLHRLFNESSPKSKLA-----PAALVLVPTRELCQQVYSEVMALIELCKGQVQL 132
AYL+P++ + N + A ++LVPTREL QQV + + +I C +
Sbjct: 71 LAYLVPVIQTILNYKANAPNEADEGSSTLGIILVPTRELAQQVTAVLEKMILFCSKDI-- 128
Query: 133 KVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADL 192
K + ++S + AS + A L P+I++ATPG + L T + + D+LK V+DEADL
Sbjct: 129 KTLNVSSDLSASVMTALLLEKPEIIVATPGKLTNLLDTKI--NYISLDNLKFFVIDEADL 186
Query: 193 LLSYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD 250
+L++GY+DDL ++ +P + Q LMSAT + D+++LK P IL + KD
Sbjct: 187 VLTFGYQDDLNKIAEYLPLKKNLQTFLMSATLNDDINELKTKFCRAPAILKFNDDNINKD 246
Query: 251 EVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 310
+ + Q+++ +E DK L + KL L++ K LIF N ID +RLKL +E+FGIKS
Sbjct: 247 QT---KLVQYYVKTNEFDKFLLCYVIFKLNLIKGKTLIFVNNIDRGYRLKLVMEQFGIKS 303
Query: 311 AILNAELPQNSRLHILEEFNAGLFDYLIATDDT-----------------QT--KEKDQS 351
ILN+ELP NSR HI+++FN L+ LIATDDT QT +E +
Sbjct: 304 CILNSELPSNSRQHIVDQFNKNLYSLLIATDDTDFLKEGDEGEEQESVEEQTDNQETKDT 363
Query: 352 DEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAY 411
+E + K + H + K D E+GV RG+DFKNV V+NF++P A YVHRIGRT RA
Sbjct: 364 EEPNKEQNTKKRNHTEVKQDKEYGVSRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAG 423
Query: 412 NTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNA--------------- 456
+G ++S V P +K F + K + D I + +L Q +
Sbjct: 424 RSGTAISFVVP--LKDFGKHKPSMCPTAKRDEKIFS--RILKQQSKLGLELQPYSFDPKQ 479
Query: 457 VESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSK 516
+E RYR ED ++VT++AVRE+R ++LR E+L SEKLK HFE NPK+L L+HDK+L
Sbjct: 480 IEGFRYRMEDGFRAVTQVAVREARIKELRQELLASEKLKRHFEENPKELQSLRHDKELHP 539
Query: 517 KPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGP--RRKFRKSDPLKSF 573
HL+ VP+YLL ++ K + K + +G +R+ K+DPLK+F
Sbjct: 540 ARVQQHLKRVPEYLLPDAAKQGGKKPRFV-PFHNPKKTRHNKGKVGKRRTAKADPLKNF 597
>gi|160380693|sp|A7TPC9.2|DBP9_VANPO RecName: Full=ATP-dependent RNA helicase DBP9
Length = 597
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 242/604 (40%), Positives = 347/604 (57%), Gaps = 66/604 (10%)
Query: 19 EAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLIL-EGKDVVARAKTGSGKT 77
EA ++ SFE L LD RL+ A+ + G + PTLIQ +IPL L E +D++A+A TG GKT
Sbjct: 10 EAYIDDSISFESLQLDTRLLQAIKRNGFKNPTLIQSHAIPLALQEKRDIIAKAATGCGKT 69
Query: 78 FAYLLPLLHRLF-----NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQL 132
AYL+P++ + N ++LVPTREL QQV + +I C +
Sbjct: 70 LAYLIPVIQTILDYKKTNTDKIDGTSNTLGIILVPTRELAQQVNDVLDKMILYCSNDI-- 127
Query: 133 KVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADL 192
+ + ++S MP+S L + L P+I+IATPG + L T V +S S + LK LV+DE DL
Sbjct: 128 RSLNISSDMPSSVLTSLLLEKPEIIIATPGKLMTLLDTNV-ESVSLEE-LKFLVIDEVDL 185
Query: 193 LLSYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTL--PEVGDV 248
+L++GY++DL ++ +P + Q LMSAT + D+ +LKK P IL E+
Sbjct: 186 VLTFGYKEDLSKIAEYLPLKKNLQTFLMSATLNDDIQELKKEFCRAPAILKFNDDEISKD 245
Query: 249 KDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGI 308
K+++I Q+++ SE DK L + KL L++ K LIF N ID +RLKL LE+FGI
Sbjct: 246 KNKLI-----QYYVKTSEFDKFLLCYVIFKLGLIKGKTLIFVNNIDRGYRLKLVLEQFGI 300
Query: 309 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ----------------TKEKDQSD 352
KS ILN+ELP NSR HI+++FN ++ LIATDDT+ ++E+D+ +
Sbjct: 301 KSCILNSELPANSRQHIVDQFNKNVYHLLIATDDTEYIKEEDEENDDEIETNSEEQDKVE 360
Query: 353 EGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYN 412
+ +K KK K K D EFGV RG+DF+NV V+NF++P A YVHRIGRT RA
Sbjct: 361 DSNDTKDKKGKKASKIKKDKEFGVSRGVDFQNVACVLNFDLPTTAKSYVHRIGRTARAGK 420
Query: 413 TGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA--------------PFPLLAQNAVE 458
TG ++S V P +K F + K + D I++ P+ + +E
Sbjct: 421 TGTAISFVVP--LKEFGKHKPSMYQSTKRDEKILSRIIKQQSKLGLELQPYSFDTKQ-IE 477
Query: 459 SLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKP 518
RYR ED ++VT++A+RE+R ++L++E+L SEKLK HFE NP++L L+HDK+L
Sbjct: 478 GFRYRMEDGFRAVTQVAIREARVKELKDELLASEKLKRHFEENPQELQSLRHDKELHPSR 537
Query: 519 PASHLRDVPDYLLDAKTQEACKMV---------KLARAAMGNKNSSRRQGPRRKFRKSDP 569
HL+ VPDYLL A+ +E K V K R NK +R G KSDP
Sbjct: 538 VQQHLKRVPDYLLPAEAREGKKKVGFVPFHSVKKSNRHKKNNKVFKKRSGS-----KSDP 592
Query: 570 LKSF 573
LK+F
Sbjct: 593 LKNF 596
>gi|67540408|ref|XP_663978.1| hypothetical protein AN6374.2 [Aspergillus nidulans FGSC A4]
gi|74680800|sp|Q5AZA6.1|DBP9_EMENI RecName: Full=ATP-dependent RNA helicase dbp9
gi|40739568|gb|EAA58758.1| hypothetical protein AN6374.2 [Aspergillus nidulans FGSC A4]
gi|259479407|tpe|CBF69600.1| TPA: ATP-dependent RNA helicase dbp9 (EC 3.6.1.-)
[Source:UniProtKB/Swiss-Prot;Acc:Q5AZA6] [Aspergillus
nidulans FGSC A4]
Length = 610
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 244/614 (39%), Positives = 357/614 (58%), Gaps = 57/614 (9%)
Query: 4 SKEIPSKEVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEG 63
+ ++PS E +AEE + A+ ++ FE L LD RL AL K+ KPT +Q +IPL LEG
Sbjct: 7 ANDVPSTEANEAEEVKG-ADRDEDFETLNLDPRLRQALVKEKFSKPTPVQAKAIPLALEG 65
Query: 64 KDVVARAKTGSGKTFAYLLPLLHRLFNESS--PKSKLAPAALVLVPTRELCQQVYSEVMA 121
KD++ARAKTGSGKT AY+LP+L + + + P K A L+LVPTREL +QV +
Sbjct: 66 KDILARAKTGSGKTAAYVLPILQTILQKKAIDPSMK-ATTGLILVPTRELAEQVQKVITT 124
Query: 122 LIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS 181
C V + V LT + + +A LA PDIV++TP + L T L ++ +
Sbjct: 125 FAAFCGKDV--RSVNLTQKVSDAVQKAMLADYPDIVVSTPARVIANLGTSALSLENLTH- 181
Query: 182 LKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILT 241
LV+DEADL+LSYGYEDD+ ALS IPRG Q LMSAT +++VD LK L +P IL
Sbjct: 182 ---LVIDEADLVLSYGYEDDINALSKAIPRGVQTFLMSATLTAEVDTLKGLFCRSPVILK 238
Query: 242 LPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKL 301
L + D V QF + C+E +K L + KL+L++ K +IF ID ++RLKL
Sbjct: 239 LEDKDDHG-----AGVSQFVVKCAEDEKFLLTYVIFKLQLIKGKVIIFVGDIDRSYRLKL 293
Query: 302 FLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQT-------KEKDQS--- 351
FLE+FGIKS ILN+ELP NSR+H++EEFN G++D +IA D+ + K KD +
Sbjct: 294 FLEQFGIKSCILNSELPVNSRIHVVEEFNKGVYDIIIAADEQEVLGVSKSRKSKDATEGD 353
Query: 352 -------DEGGHVDSRKSKKHPKAKLDS---EFGVVRGIDFKNVHTVINFEMPQNAAGYV 401
DE + ++ + KL S ++G+ RGIDF+NV V+NF++P ++ Y
Sbjct: 354 DELLSDEDEETSAKAASTRTDKRRKLSSKEKDYGISRGIDFQNVACVLNFDLPTSSKSYT 413
Query: 402 HRIGRTGRAYNTGASVSLVSPDE------------MKIFEEIKSFVGDDENEDSNIIAPF 449
HRIGRTGR TG ++S V P + K E + + + + + + + P+
Sbjct: 414 HRIGRTGRGGKTGMALSFVIPADKYGKHKPTSISSAKHDEAVLAKIIKRQAKLGHEVKPY 473
Query: 450 PLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLK 509
V++ RYR D +++T++A++E+RA+++R E++ SEKLK HFE NP++L L+
Sbjct: 474 H-FDMTQVDAFRYRMSDALRAITRLAIQEARAREIRQELVKSEKLKRHFEENPEELRQLR 532
Query: 510 HDKDLSKKPPASHLRDVPDYLLDAK-----TQEACKMVKLARAAMGN---KNSSRRQGPR 561
HD +L HL+ +P+YL+ AK + E V L + N K R +G
Sbjct: 533 HDGELRAARIQPHLKHIPEYLMPAKGKKGISNEDVGFVSLRKTGPENRIRKARDRNRGRG 592
Query: 562 RK-FRKSDPLKSFS 574
+K RK DPLK+F+
Sbjct: 593 KKPGRKIDPLKTFN 606
>gi|348676256|gb|EGZ16074.1| hypothetical protein PHYSODRAFT_506165 [Phytophthora sojae]
Length = 610
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 225/557 (40%), Positives = 337/557 (60%), Gaps = 38/557 (6%)
Query: 30 ELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLF 89
E GLD RL A+ K TL+Q IPL L+GKD++ RA+TGSGKT A+ LPLLH++
Sbjct: 22 EFGLDRRLTKAVAKMRFVHATLVQVHCIPLALQGKDLLVRARTGSGKTAAFALPLLHKIL 81
Query: 90 N--ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+ +P S+ ALVLVPT+EL +Q +M L+ C+ V L + SM A +
Sbjct: 82 QHKQDAPASEPVVRALVLVPTKELVEQTRRHMMELMYYCQDTVSLLALG-GQSMNAQ--Q 138
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
A L PD++++TPG + L G L + DS++ +V+DEADL+LS+GY +D++ +
Sbjct: 139 ALLRDAPDVLVSTPGRLVAHLEAGNL---TLKDSVQTVVIDEADLVLSFGYGEDIRTIFN 195
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 267
+P+ CQ MSAT S +++KLK+ +LHNP ++ L E +QQF++
Sbjct: 196 ALPKACQTFCMSATLSPELEKLKRSVLHNPAVVKLEE------GATDGKLQQFYLPVKPA 249
Query: 268 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 327
DK L + LL+L +V K + F N+ D A+RLKLF E+F IKSA+LNA+LP NSR HI+E
Sbjct: 250 DKDLLLYALLRLGVVSGKVIFFVNSTDAAYRLKLFFEQFVIKSAVLNAKLPHNSRQHIIE 309
Query: 328 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 387
EFN GLFDYLIATDD+ +++ + +K+ + + D +GV RG+DF+ V
Sbjct: 310 EFNRGLFDYLIATDDSVDRDEQE---------KKTVGSKRGRADEGYGVSRGVDFRGVQF 360
Query: 388 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS---PDEMKIFEEIKSFVGDDENEDSN 444
VIN + P++ Y HRIGRT R +G ++SLVS P E + + +++ +E ++
Sbjct: 361 VINVDFPKSVRAYTHRIGRTARGGASGTALSLVSKDDPKEERALKRVQARQQAVRSESND 420
Query: 445 IIAPFPLLAQNA--VESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNP 502
+IA LA + ++ RYR EDV ++VT++AVRE++ D++ E+LNSE+L AHF+ NP
Sbjct: 421 VIAQPAELAFDLKDIDCFRYRVEDVRRAVTRVAVREAQLADVKKEMLNSERLAAHFQANP 480
Query: 503 KDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQ---- 558
+DL++L+HDK + P HL +PDYL+ + Q +R + ++RQ
Sbjct: 481 RDLNMLEHDKVVGSAPVQPHLATIPDYLVPIELQPPAP----SRTKKKHNKHNKRQRLAD 536
Query: 559 GPRRKFRKSDPLKSFSA 575
G RR +DPL +F A
Sbjct: 537 GKRRT--DNDPLHTFVA 551
>gi|154281927|ref|XP_001541776.1| hypothetical protein HCAG_03874 [Ajellomyces capsulatus NAm1]
gi|160380634|sp|A6R2L6.1|DBP9_AJECN RecName: Full=ATP-dependent RNA helicase DBP9
gi|150411955|gb|EDN07343.1| hypothetical protein HCAG_03874 [Ajellomyces capsulatus NAm1]
Length = 625
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 221/575 (38%), Positives = 336/575 (58%), Gaps = 58/575 (10%)
Query: 5 KEIPSKEVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGK 64
+++ + V E+ ++ SFE L LD RL+ AL ++ KPT IQ +IPL L+GK
Sbjct: 3 RKLDANNVPSPEDSAGKSITAHSFETLKLDPRLLQALTQQKFTKPTPIQAEAIPLALDGK 62
Query: 65 DVVARAKTGSGKTFAYLLPLLHRLFNE--SSPKSKLAPAALVLVPTRELCQQVYSEVMAL 122
DV+ARAKTGSGKT AYLLP+L + + ++P K + +AL+LVPTREL +QV+ ++
Sbjct: 63 DVLARAKTGSGKTAAYLLPVLQSILQQKRNTPAHK-SISALILVPTRELAEQVHRTAISF 121
Query: 123 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSL 182
V + V LT + + R+ LA PDIV++TP +++ L + L
Sbjct: 122 SAFSGKHV--RSVNLTQKVSDAVQRSLLADLPDIVVSTPARAVANVNSSALSL----ERL 175
Query: 183 KILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL 242
LV+DEADL+LSYGYE+D+++L+ +PRG Q LMSAT +S+VD LK L NP +L L
Sbjct: 176 THLVIDEADLVLSYGYEEDMQSLAKAVPRGVQTFLMSATFTSEVDTLKGLFCRNPVVLKL 235
Query: 243 PEVGDVKDEVIPKNVQQFWIS-CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKL 301
E D + QF + C+E +K L + KL+LV+ K +IF +D +RLKL
Sbjct: 236 EEKEDEG-----AGISQFVVRRCAEDEKFLLTYVIFKLQLVKGKCIIFVGDVDRCYRLKL 290
Query: 302 FLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ----------------- 344
FLE+FGI+S +LN+ELP NSR+H+++EFN G++D +IA DD +
Sbjct: 291 FLEQFGIRSCVLNSELPVNSRIHVVQEFNKGVYDIIIAVDDQEVLGELRKNSKKQPRKSD 350
Query: 345 -------------TKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINF 391
++ DQ +++ SK+ K+ + ++G+ RGIDF+NV V+NF
Sbjct: 351 QCSRDSEYDGAQTSRNNDQYSSEDDAETQPSKRPKKSAKEKDYGISRGIDFQNVACVLNF 410
Query: 392 EMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM------------KIFEEIKSFVGDDE 439
++P + Y HRIGRTGRA TG ++S V P + K E + S + +
Sbjct: 411 DLPTTSKSYTHRIGRTGRAGKTGMALSFVIPSDQFGKHKPTSIPSAKHDEAMLSKIIKRQ 470
Query: 440 NEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFE 499
++ + P+ + V++ RYR D ++VT++AV+E+RA+++R E++ SEKLK HFE
Sbjct: 471 DKLGREVKPYHFDMKQ-VDAFRYRMSDALRAVTRVAVQEARAREIRQELVKSEKLKRHFE 529
Query: 500 VNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAK 534
NP++L L+HD +L +HL+ VPDYL+ K
Sbjct: 530 ENPEELRQLRHDGELRAARVQAHLKHVPDYLMPTK 564
>gi|310795147|gb|EFQ30608.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
Length = 594
Score = 386 bits (992), Expect = e-104, Method: Compositional matrix adjust.
Identities = 232/596 (38%), Positives = 347/596 (58%), Gaps = 41/596 (6%)
Query: 7 IPSKEVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDV 66
+P+ E ++ + E E SF +LGLD RLV A+ + ++PT +QQ +IPL L+GKDV
Sbjct: 10 VPAGETEKRVKTEQSTTTELSFADLGLDTRLVQAVAAESFKEPTPVQQKAIPLALDGKDV 69
Query: 67 VARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELC 126
VA+A GSGKT AY+LP+L + + S A AL+LVPTREL QV + C
Sbjct: 70 VAKAPCGSGKTAAYVLPVLSSILKRKTTDSSPATTALILVPTRELADQVLKAIEKFSAYC 129
Query: 127 KGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILV 186
+ ++L + + R+ L+ PD+VI+TP + + + L +L +V
Sbjct: 130 AKDIH--AIKLVDKISDAVQRSLLSNFPDVVISTPATAWRNIVSEAL----LLGNLTSIV 183
Query: 187 LDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVG 246
LDEADL++SYGY +DL+ ++ +P+G Q +MSAT S+DV L+ P IL L +
Sbjct: 184 LDEADLIMSYGYNEDLENIARKLPKGVQLTMMSATLSTDVTTLQGTFGRKPTILDLDD-- 241
Query: 247 DVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKF 306
+E ++ QF +SC E +K L + KL+LV+ K LIF N +D ++RLKLFLE+F
Sbjct: 242 ---EETEGDSLSQFVVSCGEDEKFLLAFIIFKLKLVKGKCLIFVNDVDRSYRLKLFLEQF 298
Query: 307 GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRK----- 361
++S ILN+ELP SR H+LEEFN G++D +IA+D+ ++ D D+ +
Sbjct: 299 QVRSCILNSELPVTSRAHVLEEFNRGVYDIIIASDEKSAMGAEEKDGEEEEDTEQRQKEK 358
Query: 362 --SKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSL 419
SKK K+K DSEFGV RGIDFKNV V+NF++P +A+ Y HRIGRT RA TG ++S
Sbjct: 359 EQSKKKRKSKRDSEFGVSRGIDFKNVAAVVNFDLPTSASSYTHRIGRTARAGRTGMALSF 418
Query: 420 VSPDEM------------KIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDV 467
P E+ + E+I + + + + + P+ ++ +++ RYR D
Sbjct: 419 YVPTELYRKHLPTSIETAEHDEKILARIKKQQAKQGKEVKPYSFKKEH-LDAFRYRLNDA 477
Query: 468 AKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVP 527
++VTK+AVRE+R ++L+ E+L SEKLK +FE NP +L L+HD +L HL+ +P
Sbjct: 478 LRAVTKVAVREARMRELKQELLKSEKLKRYFEENPTELQHLRHDGELRTARQQPHLKHIP 537
Query: 528 DYLL-----DAKTQEACKMVKLARAAMGNKNSSRRQGPRRK---FRKSDPLKSFSA 575
+YLL D+ T+ MV + +G K + P RK RK +PLK+F A
Sbjct: 538 EYLLPKEGKDSLTKNDVGMVPFRK--VGGKQRRNKGKPGRKKIGTRKVNPLKTFKA 591
>gi|401624490|gb|EJS42546.1| dbp9p [Saccharomyces arboricola H-6]
Length = 594
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 238/600 (39%), Positives = 335/600 (55%), Gaps = 59/600 (9%)
Query: 18 EEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLIL-EGKDVVARAKTGSGK 76
E A ++ +FE LD RL+ A+ G Q PTLIQ SIPL L E +D++A+A TGSGK
Sbjct: 9 EGAYIDDATTFESFHLDSRLLQAIKNIGFQNPTLIQSHSIPLALQEKRDIIAKAATGSGK 68
Query: 77 TFAYLLPLLHRLFNES---SPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLK 133
T AYL+P++ + + + ++LVPTREL QQVY+ + LI C + +
Sbjct: 69 TLAYLIPVIQTILEYKKTIANDEENGTLGIILVPTRELAQQVYNVLEKLILYCSKDI--R 126
Query: 134 VVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLL 193
+ ++S M L L P+I++ TPG + L T + S S +D LK LV+DE DL+
Sbjct: 127 SLNISSDMSGPVLSTLLMDQPEIIVGTPGKLLDLLQTKI-DSISLND-LKFLVVDEVDLV 184
Query: 194 LSYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 251
L++GY+DDL + +P + Q LMSAT + ++ LK+ +P IL DE
Sbjct: 185 LTFGYQDDLDKIGEYLPLKKKLQTFLMSATLNDEIQTLKQKFCRSPAILKF------NDE 238
Query: 252 VIPKN---VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGI 308
I KN + Q+++ SE DK L+ + KL L++ K LIF N ID +RLKL +E+FGI
Sbjct: 239 EINKNQNKLLQYYVKVSEFDKFLFCYVIFKLGLIKGKTLIFVNNIDRGYRLKLVMEQFGI 298
Query: 309 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ-TKEKDQ----------------- 350
KS ILN+ELP NSR HI+++FN ++ LIATDDT+ KE+D+
Sbjct: 299 KSCILNSELPINSRQHIVDQFNKNVYQLLIATDDTEYIKEEDEDIGEEHSSQNEEDKNLG 358
Query: 351 -SDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGR 409
E G S+K K + K D E+GV RG+DFKNV V+NF++P A YVHR+GRT R
Sbjct: 359 TETENGQAPSKKKK--IQVKEDKEYGVSRGVDFKNVACVLNFDLPTTAKSYVHRVGRTAR 416
Query: 410 AYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA--------------PFPLLAQN 455
TG ++S V P +K F + K + D I++ P+ Q
Sbjct: 417 GGKTGTAISFVVP--LKEFGKHKPSMLQTAKRDEKILSRIIKQQSKLGLELQPYR-FDQE 473
Query: 456 AVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLS 515
VE RYR ED ++VT++A+RE+R ++L+ E+L SEKLK HFE NPK+L L+HDK+L
Sbjct: 474 QVEGFRYRMEDGFRAVTQVAIREARVKELKQELLASEKLKRHFEENPKELQSLRHDKELH 533
Query: 516 KKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFR--KSDPLKSF 573
HL+ VPDYLL + VK K R+G K + K DPLK+F
Sbjct: 534 PARVQQHLKRVPDYLLPESARGNGTKVKFVPFHNPKKRHPHRKGKVNKPKNGKVDPLKNF 593
>gi|431909937|gb|ELK13033.1| Putative ATP-dependent RNA helicase DDX56 [Pteropus alecto]
Length = 545
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 216/508 (42%), Positives = 311/508 (61%), Gaps = 21/508 (4%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
FE +GLD RL+ A+ G +PTLIQ+ +IPL LEGKD++ARA+TGSGKT AY +P+L
Sbjct: 8 GFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQ 67
Query: 87 RLFNE--SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
L ++ + P + A +VLVPT+EL +Q S + L C + +V ++++ ++
Sbjct: 68 LLLHKKTTGPAVEQAVRGVVLVPTKELARQAQSMIQQLAAYCARDI--RVANVSAAEDSA 125
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
RA L PDIV+ TP + L+ S DSL++LV+DEADLL S+G+E++LK+
Sbjct: 126 SQRAVLTEKPDIVVGTPS---RILNHLQQDSLRLRDSLELLVMDEADLLFSFGFEEELKS 182
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264
L +PR Q LMSAT + DV LK+L+LHNP L L E P+ +QQF + C
Sbjct: 183 LLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE----SQLPGPEQLQQFQVVC 238
Query: 265 S-ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+ E DK L + LLKL L++ KAL+F NT++ ++RL+LFLE+F I + +LN ELP SR
Sbjct: 239 AAEEDKFLVLYALLKLALIRGKALLFVNTLERSYRLRLFLEQFSIPACVLNGELPLRSRC 298
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
HI+ +FN GL+D +IATD + G K K +A D E GV RGIDF
Sbjct: 299 HIISQFNQGLYDCVIATDAEVLGASVKGKRRG-----KGSKGDRAS-DPEAGVARGIDFH 352
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDS 443
+V V+NF++P + Y+HR GRT RA N G ++ V P E+ +I+ +G D D+
Sbjct: 353 HVCAVLNFDLPPSPEAYIHRAGRTARANNPGIVLTFVLPTELPHLGKIEELLGGD--SDA 410
Query: 444 NIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPK 503
+ P+ + +E RYR D +SVTK +RE+R ++++ E+L+SE+LK +FE NP+
Sbjct: 411 PTLLPYQFHMEE-IEGFRYRCRDAMRSVTKQGIREARLKEIKEELLHSERLKTYFEDNPR 469
Query: 504 DLDLLKHDKDLSKKPPASHLRDVPDYLL 531
DL LL+HD L HL VPDYL+
Sbjct: 470 DLQLLRHDLPLHPAVVKPHLGHVPDYLV 497
>gi|46111741|ref|XP_382928.1| hypothetical protein FG02752.1 [Gibberella zeae PH-1]
gi|91206554|sp|Q4IJ56.1|DBP9_GIBZE RecName: Full=ATP-dependent RNA helicase DBP9
Length = 615
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 227/600 (37%), Positives = 339/600 (56%), Gaps = 45/600 (7%)
Query: 9 SKEVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVA 68
S +V++A + + EEE SF +LGLD RL+ A+ ++ KPTL+Q+ +IPL L G+DV+A
Sbjct: 23 STDVEKAIKPAQKQEEETSFVDLGLDPRLLQAIAQQKFAKPTLVQRKAIPLALNGQDVLA 82
Query: 69 RAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKG 128
+A GSGKT AY+LPLL + + S AL+LVPTREL QV + C
Sbjct: 83 KADCGSGKTAAYVLPLLSSILKRKATDSTAFTTALILVPTRELADQVSKAIEQFASFCAK 142
Query: 129 QVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLD 188
+ +LT + + RA L+ PDIVI+TP + +++ L D L L+LD
Sbjct: 143 DIS--TAKLTDKVSSKVQRALLSNSPDIVISTPSTAWQNVNSSALS----IDKLTHLILD 196
Query: 189 EADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDV 248
EADL+LSYGY +DL+ LS +P+G Q ++MSAT S +VD LK + +P +L L E
Sbjct: 197 EADLVLSYGYSEDLENLSRSVPKGVQVMMMSATLSDEVDTLKGIFRRDPTLLDLKE---- 252
Query: 249 KDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGI 308
E + + QF C E +K L + KL+L++ K +IF + ID +RLKLF E+FGI
Sbjct: 253 -KEAEGEGITQFVAKCGEDEKFLLAYVIFKLKLIKGKCIIFVSDIDRCYRLKLFFEQFGI 311
Query: 309 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEG----GHVDSRKSKK 364
+S ILN+ELP NSR+H++EEFN ++D +IA D+ D + D++KS +
Sbjct: 312 RSCILNSELPLNSRVHVVEEFNRHVYDIIIAADEKNEMLGDDEEPAETAEAQDDAKKSNE 371
Query: 365 HPKAKLDS---------------EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGR 409
A+ ++ E+GV RG+DFK V VINF++P A+ Y HRIGRT R
Sbjct: 372 GDDAETEAKRPKKKAKKSKGGDKEYGVSRGVDFKKVSAVINFDLPTTASAYTHRIGRTAR 431
Query: 410 AYNTGASVSLVSPDEM------------KIFEEIKSFVGDDENEDSNIIAPFPLLAQNAV 457
A TG ++S V P ++ + E+I + + + + + P+ + V
Sbjct: 432 AGQTGMALSFVVPKDLYRKHMPTSTPACENDEKIMARIIRQQAKRDKEVKPYNFNMKQ-V 490
Query: 458 ESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKK 517
+ RYR D ++VTK+A+RE+R ++LR E+L SEKLK +FE NP +L L+HD +L
Sbjct: 491 DPFRYRMNDALRAVTKVAIREARTRELRQELLKSEKLKRYFEENPTELSHLRHDGELRTA 550
Query: 518 PPASHLRDVPDYLL--DAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSFSA 575
+HL+ +P+YL+ D K + +A + +G + RK DPLK+F A
Sbjct: 551 RQQAHLKHIPEYLMPKDGKQALTEDVGFVAMRKDKKGKGKKGRGFKVGSRKRDPLKTFKA 610
>gi|346971615|gb|EGY15067.1| ATP-dependent RNA helicase dbp9 [Verticillium dahliae VdLs.17]
Length = 609
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 237/617 (38%), Positives = 360/617 (58%), Gaps = 70/617 (11%)
Query: 10 KEVKQAEEEEAEA-------EEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILE 62
+++ Q EE E A E + +++ LGL RL+ + + PT IQ ++PL LE
Sbjct: 3 RKIDQTEEPEVAATPTKKPSETKATWDNLGLSPRLLQGVAQLNWHNPTDIQAKAVPLALE 62
Query: 63 GKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLA---PAALVLVPTRELCQQVYSEV 119
G+D++A++ TG+GKT AY+LP+L ++ ++K A + L+LVPTREL QV+ +
Sbjct: 63 GRDILAKSGTGTGKTAAYVLPVLEKVLQRKEKEAKGAAAATSVLMLVPTRELADQVHRSI 122
Query: 120 MALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS 179
+L C +Q V+LT + + RA L+ PDIVI+TP +S+ L + +
Sbjct: 123 ESLAAFCAKDIQ--AVKLTDKVSTTVQRALLSANPDIVISTPARAWDNVSSSALSLANLT 180
Query: 180 DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYI 239
LVLDEADL+LSYGY++DL+ ++ +P+G Q +LMSAT + +VD +K L NP +
Sbjct: 181 H----LVLDEADLVLSYGYKEDLQNVARSLPKGVQTILMSATLTPEVDTVKGLFCRNPAL 236
Query: 240 LTL--PEV-GDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMA 296
L L PE GD + QF + C+E +K L I + KL+L+Q KAL+F + +D +
Sbjct: 237 LDLEQPEAEGD--------GITQFVVKCAEDEKFLLIYVIFKLKLIQGKALVFCHDVDRS 288
Query: 297 FRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQT----------- 345
++LKL+ E+FGI+S ILNAELP NSRLH+++EFN G++D LIA+DD +
Sbjct: 289 YKLKLYFEQFGIRSCILNAELPVNSRLHVVDEFNKGVYDILIASDDNEVVGDEGQEDEGE 348
Query: 346 ---KEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVH 402
E+ + + +++ ++ ++ D E+GV RGIDFKNV VINF++P +A Y H
Sbjct: 349 EETTEEPKKEAKKSKKTQQQQQQRASRKDKEYGVSRGIDFKNVAAVINFDLPTSAKSYTH 408
Query: 403 RIGRTGRAYNTGASVSLVSP------------DEMKIFEEIKSFVGDDENEDSNIIAPFP 450
RIGRT RA G ++S V P + + E+I + + + + + P+
Sbjct: 409 RIGRTARAGQRGMALSFVIPAQHYRGHPPSSVESAEHDEKILARIEKQQAKKGKEVKPYH 468
Query: 451 L-LAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLK 509
+AQ V + +YR +D ++VT++AVRE+R ++LR E++ S+KL+ HFE NP++L L+
Sbjct: 469 FDMAQ--VSAFKYRMDDALRAVTRVAVREARTRELRQELIKSDKLRRHFEENPQELAHLR 526
Query: 510 HDKDLSKKPPASHLRDVPDYLLDAK-----TQEACKMVKLARAAMGNKNSSRRQGPR--- 561
HD +L HLR VPDYLL A T + V L R +NSSRR G +
Sbjct: 527 HDGELRAARMQPHLRHVPDYLLPADGKKGLTADEVGFVPL-RKKNDRRNSSRRAGGKKNS 585
Query: 562 -RKF----RKSDPLKSF 573
R F +KSDPLKSF
Sbjct: 586 NRVFKVGRKKSDPLKSF 602
>gi|389629680|ref|XP_003712493.1| ATP-dependent RNA helicase DBP9 [Magnaporthe oryzae 70-15]
gi|152013498|sp|A4QTR1.1|DBP9_MAGO7 RecName: Full=ATP-dependent RNA helicase DBP9
gi|351644825|gb|EHA52686.1| ATP-dependent RNA helicase DBP9 [Magnaporthe oryzae 70-15]
gi|440475945|gb|ELQ44591.1| ATP-dependent RNA helicase dbp9 [Magnaporthe oryzae Y34]
gi|440487798|gb|ELQ67573.1| ATP-dependent RNA helicase dbp9 [Magnaporthe oryzae P131]
Length = 636
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 239/607 (39%), Positives = 343/607 (56%), Gaps = 81/607 (13%)
Query: 30 ELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLF 89
+LGLD RL+ A+ ++ QKPTL+Q +IPL LEG+DV+A+AKTGSGKT AY+LP+L +
Sbjct: 47 DLGLDPRLLQAVAQQSFQKPTLVQSKAIPLALEGRDVLAKAKTGSGKTAAYVLPILQAVL 106
Query: 90 NESSPKSKLAPAA-----LVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
+ ++ P A L+LVPTREL QV EV C +VQ VV LT + +
Sbjct: 107 K----RKQINPGATYISSLILVPTRELTVQVTKEVERFSAFCAKEVQ--VVGLTDKVSDA 160
Query: 145 DLRAAL-AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLK 203
R+ L + PDIV++TP + + +G L D L LVLDEADL+LSYGY++DL+
Sbjct: 161 VQRSLLQSSSPDIVVSTPSTAWRNVDSGALSL----DKLTHLVLDEADLVLSYGYDEDLE 216
Query: 204 ALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWIS 263
++ +P+G Q ++ SAT + ++D LK + L +P +L L E E+ Q+ +
Sbjct: 217 KVARGLPKGVQTVMTSATLTDEIDTLKGIFLRDPVLLDLEEPDAEGSEIT-----QYIVK 271
Query: 264 CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
C E +K L L KL+L++ K +IF +D +RLKLF E+FGI+S ILN+ELP NSR+
Sbjct: 272 CGEDEKFLLAYILFKLQLIKGKVIIFVADVDRCYRLKLFFEQFGIRSCILNSELPVNSRI 331
Query: 324 HILEEFNAGLFDYLIATDDTQT--------------------KEKDQSDEGGHVDSRKSK 363
++EEFN ++D +IA+D+ + K+ + DEG D SK
Sbjct: 332 SVVEEFNRNVYDIIIASDENEMMGDEDRPAPNGDGKEEAEVDKKHENEDEGQ--DGEASK 389
Query: 364 KHP--------KAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGA 415
P K D ++GV RGIDFKNV V+NF++P ++ Y HRIGRTGRA G
Sbjct: 390 AAPRPKKKRKMDRKRDKQYGVSRGIDFKNVAVVVNFDLPLSSTSYTHRIGRTGRAGQAGM 449
Query: 416 SVSLVSPDEMKIFEEIKSFVGDDENEDSNI-------------IAPFPLLAQNAVESLRY 462
+S P E+ + I + + EN++ + I P+ ++ VES RY
Sbjct: 450 VLSFYVPKEL-FRKHIPTSIDSAENDEKVLARVIKQQKKLGREIKPYN-FDRDQVESFRY 507
Query: 463 RAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLD-LLKHDKDLSKKPPAS 521
R D ++VTKIAVRE+R ++LR E+L SEKLK HFE NP +L L++HD +L
Sbjct: 508 RMNDALRAVTKIAVREARTRELRQELLKSEKLKRHFEENPAELQHLVRHDGELRTARANP 567
Query: 522 HLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQ--------GPRRKF----RKSDP 569
LR VPDYLL + ++ ++ + + SS RQ G R F RK DP
Sbjct: 568 ELRHVPDYLLPKEGRKGLSAAEIGFVPL--RKSSDRQKKGRFFKKGGARSFKAGGRKPDP 625
Query: 570 LKSFSAE 576
LK+F A+
Sbjct: 626 LKTFKAK 632
>gi|258565271|ref|XP_002583380.1| ATP-dependent helicase [Uncinocarpus reesii 1704]
gi|237907081|gb|EEP81482.1| ATP-dependent helicase [Uncinocarpus reesii 1704]
Length = 607
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 236/625 (37%), Positives = 353/625 (56%), Gaps = 73/625 (11%)
Query: 5 KEIPSKEVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGK 64
+++ + V E E ++SFE L LD RL+ AL K+ KPTL+Q +IPL L GK
Sbjct: 3 RKLDANNVPTPEGAEQSRAVQQSFEALQLDPRLLQALTKQKFTKPTLVQAEAIPLALSGK 62
Query: 65 DVVARAKTGSGKTFAYLLPLLHRLFNE--SSPKSKLAPAALVLVPTRELCQQVYSEVMAL 122
DV+ GSGKT AYLLP+L + ++ ++P K + +AL+LVPTREL +QV+ +++
Sbjct: 63 DVL-----GSGKTAAYLLPVLQSILHKKIANPTQK-STSALILVPTRELAEQVHDTILSF 116
Query: 123 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS--- 179
C +Q LT + + RA LA PDIV++TP + V+ + + S
Sbjct: 117 SSYCGKDLQ--TANLTQKVSDAVQRAILADLPDIVVSTP-------ARAVVNANNSSLAL 167
Query: 180 DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYI 239
D+L LV+DEADL+LSYGYE D++ L+ IPRG Q LLMSAT +S+VD LK L +P
Sbjct: 168 DNLTHLVIDEADLVLSYGYEQDMQHLAKSIPRGVQTLLMSATLTSEVDTLKGLFCRSPVT 227
Query: 240 LTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRL 299
L L E D + QF + C+E +K L + KL+LV+ K +IF +D ++RL
Sbjct: 228 LKLEEAEDEG-----AGISQFAVKCAEDEKFLLTYVIFKLQLVKGKCIIFVGDVDRSYRL 282
Query: 300 KLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQT-------KEKDQSD 352
KLFLE+FGIKS +LN+ELP NSR+H+++EFN G++D +IA DD + + KD +
Sbjct: 283 KLFLEQFGIKSCVLNSELPVNSRIHVVQEFNKGVYDIIIAADDQEVVGEVPRKQPKDSNR 342
Query: 353 EGGH--------------VDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAA 398
E + VD KK K+ + ++G+ RGIDF++V V+NF++P A
Sbjct: 343 EAQNSADEAQKGLSEDEEVDRPPVKKRKKSSKEKDYGISRGIDFQDVACVLNFDLPTTAK 402
Query: 399 GYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF--VGDDENEDSNIIAPFPLLAQNA 456
Y HRIGRTGRA TG ++S + P E+ + SF DE + I+ L +
Sbjct: 403 SYTHRIGRTGRAGKTGMALSFIVPSELYGKHKPTSFPTAKHDETVLAKIVKRQAKLGREV 462
Query: 457 ---------VESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDL 507
+++ RYR D ++VT++AV+E+RA++++ E+L SEKLK HFE NP++L
Sbjct: 463 KPYNFDTKQIDAFRYRMTDALRAVTRVAVQEARAKEIKQELLKSEKLKRHFEENPEELRQ 522
Query: 508 LKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKS 567
L+HD +L +HL+ VP+YL+ AK + + + N +R + R + R
Sbjct: 523 LRHDGELRPARVQAHLKHVPEYLMPAKGKAGLTSGDVGFVGLKKTNENRIRKARDRNRMR 582
Query: 568 ----------------DPLKSFSAE 576
DPLK+F ++
Sbjct: 583 GKGGKRGGRGGGGRKVDPLKTFKSK 607
>gi|449690217|ref|XP_002156431.2| PREDICTED: probable ATP-dependent RNA helicase DDX56-like [Hydra
magnipapillata]
Length = 534
Score = 384 bits (985), Expect = e-103, Method: Compositional matrix adjust.
Identities = 228/553 (41%), Positives = 334/553 (60%), Gaps = 31/553 (5%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
+F + +D RLV A++K G P+ IQ+ +IP LEGKD++ RAKTGSGKT AYL+PL+
Sbjct: 4 NFTDFDIDDRLVKAISKLGWATPSEIQKRAIPPALEGKDIIIRAKTGSGKTAAYLIPLIQ 63
Query: 87 RLF-NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASD 145
++ N+ S K K ++VLVP++ELC+Q Y + L C V VV L +S S
Sbjct: 64 KILKNKESNKPK--TLSVVLVPSKELCKQSYRNALDLTSYCSKLVS--VVDLGNSTVQSS 119
Query: 146 LRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL 205
++L DI+I+TP + ++ + K F D L+LDEAD++ SYGYE DLK +
Sbjct: 120 --SSLINNADILISTPSKILAHINNKTINLKDFLD---YLILDEADMMFSYGYEQDLKTI 174
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
+ +P+ Q LL+SAT S D+ L+ LIL+ P IL L E + E + QF I C
Sbjct: 175 TTSLPKIYQALLVSATISEDIKCLEALILNKPVILKLEESHLPEKE----KLNQFVIKCE 230
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
DK L I L KL LVQ K LIF N+ID +RLKLFLE+F I++ +LN+ELPQ+SR+HI
Sbjct: 231 SSDKYLLIYALFKLNLVQGKTLIFVNSIDRCYRLKLFLEQFYIRTCVLNSELPQSSRIHI 290
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
++EFN G++D +IATD+ + S+ + + K K ++ V RGIDF++V
Sbjct: 291 VDEFNRGVYDIVIATDEAVVINTNLSNTNQNK-EKTKKNKKAMKTKKDYAVARGIDFQDV 349
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE-----MKIFEEIKSFVGDDEN 440
V+NF+ P+ Y+HR+GRT R N G ++S V+ E M + E++K+ V EN
Sbjct: 350 DNVLNFDFPETGDAYIHRVGRTARGNNHGTALSFVASSEDQKHLMMVEEKLKTDVIAKEN 409
Query: 441 EDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEV 500
+ P+ + +E LRYR DV SVT+I V+++R +++++EIL+S KLK +FE
Sbjct: 410 A----LKPYNFKIEE-IEGLRYRVNDVINSVTRIKVKDARFKEIKSEILHSNKLKMYFEE 464
Query: 501 NPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGP 560
NPKDL +L+HDK L H++DVP+YL+ + + MVK R + S Q
Sbjct: 465 NPKDLRVLRHDKILKPTDQQPHMKDVPEYLVPSSLRHI--MVKSKR----KRKQSNIQHE 518
Query: 561 RRKFRKSDPLKSF 573
+ K +K+DPLK+F
Sbjct: 519 KIKKKKTDPLKTF 531
>gi|342874553|gb|EGU76555.1| hypothetical protein FOXB_12929 [Fusarium oxysporum Fo5176]
Length = 614
Score = 383 bits (984), Expect = e-103, Method: Compositional matrix adjust.
Identities = 230/603 (38%), Positives = 339/603 (56%), Gaps = 52/603 (8%)
Query: 9 SKEVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVA 68
+ EV++ + + E+E SF +LGLD RL+ A+ ++ KPTL+Q+ +IPL L G+DV+A
Sbjct: 23 TTEVEKPTKPAQKQEDETSFVDLGLDPRLLQAIAQQKFAKPTLVQRKAIPLALNGQDVLA 82
Query: 69 RAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKG 128
+A GSGKT AY+LPLL + + S AL+LVPTREL QV+ + C
Sbjct: 83 KADCGSGKTAAYVLPLLSSILKRKATDSTAFTTALILVPTRELADQVFKAIEQFASFCAK 142
Query: 129 QVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLD 188
+ V+LT + + RA L+ PDIVI+TP ++ L D L L+LD
Sbjct: 143 DIS--TVKLTDKVSNAVQRALLSNSPDIVISTPATAWHNANSSALS----IDKLTHLILD 196
Query: 189 EADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDV 248
EADL+LSYGY +DL+ LS +P+G Q ++MSAT + +VD LK + +P +L L E
Sbjct: 197 EADLVLSYGYSEDLENLSRSVPKGIQVMMMSATLTDEVDALKGIFRRDPTLLDLKE---- 252
Query: 249 KDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGI 308
E + + QF C E +K L + KL+L++ K +IF + ID +RLKLF E+FGI
Sbjct: 253 -KEAEGEGITQFVAKCGEDEKFLLAYVIFKLKLIKGKCIIFVSDIDRCYRLKLFFEQFGI 311
Query: 309 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSD--EGGHVDSRKSKKHP 366
+S ILN+ELP NSR+H++EEFN ++D +IA D+ D + EG D+ K
Sbjct: 312 RSCILNSELPLNSRVHVVEEFNKHVYDIIIAADEKNEMMGDDEEPVEGETEDAEKQGDGD 371
Query: 367 KAKLDS---------------EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAY 411
A+ ++ E+GV RG+DFK V VINF++P A+ Y HRIGRT RA
Sbjct: 372 DAETEAKRPKKKAKKSKGGDKEYGVSRGVDFKKVSAVINFDLPTTASAYTHRIGRTARAG 431
Query: 412 NTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNA--------------- 456
TG ++S V P ++ + + + EN D ++A ++ Q A
Sbjct: 432 QTGMALSFVVPKDL-YRKHMPTSTPASEN-DEKVMA--KIIRQQAKRGKEVKPYNFNMKQ 487
Query: 457 VESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSK 516
V+ RYR D ++VTK+++RE+R ++LR E+L SEKLK +FE NP +L L+HD +L
Sbjct: 488 VDPFRYRMNDALRAVTKVSIREARTRELRQELLKSEKLKRYFEENPTELTHLRHDGELRT 547
Query: 517 KPPASHLRDVPDYLLDAKTQEACK----MVKLARAAMGNKNSSRRQGPRRKFRKSDPLKS 572
+HL+ +P+YLL ++A V L R + +G + RK DPLK+
Sbjct: 548 ARQQAHLKHIPEYLLPKDGKQALTNDIGFVAL-RKDRKGHKGKKGRGFKVGSRKRDPLKT 606
Query: 573 FSA 575
F A
Sbjct: 607 FKA 609
>gi|296423379|ref|XP_002841232.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637467|emb|CAZ85423.1| unnamed protein product [Tuber melanosporum]
Length = 590
Score = 383 bits (984), Expect = e-103, Method: Compositional matrix adjust.
Identities = 215/525 (40%), Positives = 321/525 (61%), Gaps = 31/525 (5%)
Query: 20 AEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFA 79
+E + + SF GLD RL+ + K+ PTL+Q +IPL LEGKD++ARAKTGSGKT A
Sbjct: 27 SEVDTDTSFAAFGLDPRLLQGIAKQNFSHPTLVQAKAIPLALEGKDILARAKTGSGKTAA 86
Query: 80 YLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTS 139
YLLP+L + + +AL+LVPT+EL QQV+ + +L C + + + L
Sbjct: 87 YLLPVLQAILKRKETSEERFTSALILVPTKELAQQVHKVIESLAAYCGKHI--RSINLAQ 144
Query: 140 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE 199
++ ++ L+ D+V++TP ++ S+S + L LV+DEADL+LSYGYE
Sbjct: 145 NISEKVQQSLLSEKQDVVVSTPSRALVHINI----SESLTSQLTHLVIDEADLVLSYGYE 200
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
+DL+ +S +P+G Q LMSAT +++V+ LK L NP IL L E D + E + Q
Sbjct: 201 NDLQGVSKALPKGLQTFLMSATLTTEVETLKSLFCRNPAILRLEEDVDAEGE----GLTQ 256
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+ + CSE +K L + + KL+L++ K +IF ID ++R+KLFLE+FGI+S +LN+ELP
Sbjct: 257 YCVKCSEDEKFLLLYVIFKLKLIKGKTIIFVGDIDRSYRVKLFLEQFGIRSCVLNSELPV 316
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
NSRLHI+EEFN +++ +IA+D+ + E + + K KK+ K + D E+G+ RG
Sbjct: 317 NSRLHIVEEFNKNVYEIIIASDENEQAEPEPT------PKSKKKKNAKNRKDKEYGISRG 370
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM--KIFEEIKSFVGD 437
+DFKN+ V+NF++P + Y HRIGRT RA+ G S+S V P + K +
Sbjct: 371 LDFKNLACVLNFDLPTTSKSYTHRIGRTARAHKNGISLSFVIPTHLFGKHKPTTHPICAN 430
Query: 438 DENEDSNI----------IAPFPL-LAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRN 486
+E I I P+ +AQ V++ RYR +D ++VTKIAVRE+R ++LR
Sbjct: 431 NEKTLQRIRRSQAKLGREIKPYVFDMAQ--VDAFRYRMDDALRAVTKIAVREARMRELRV 488
Query: 487 EILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 531
E++ SE+LK HFE NP+DL L+HD + + +HLR VP YLL
Sbjct: 489 ELVKSERLKRHFEENPEDLLALRHDGESGRVRVQAHLRHVPGYLL 533
>gi|50304895|ref|XP_452403.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74690379|sp|Q6CUI6.1|DBP9_KLULA RecName: Full=ATP-dependent RNA helicase DBP9
gi|49641536|emb|CAH01254.1| KLLA0C04576p [Kluyveromyces lactis]
Length = 594
Score = 383 bits (984), Expect = e-103, Method: Compositional matrix adjust.
Identities = 244/605 (40%), Positives = 345/605 (57%), Gaps = 59/605 (9%)
Query: 14 QAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLIL-EGKDVVARAKT 72
Q + ++ SF+ LD RL A+ G + PTLIQ ++IPL L E +D++A+A T
Sbjct: 3 QTSASQGYIDDSSSFDSFHLDSRLSQAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKAST 62
Query: 73 GSGKTFAYLLPLLHRLFN--ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQV 130
GSGKT AYL+P++ + + ++ + A ++LVPTREL QQV V LI C ++
Sbjct: 63 GSGKTLAYLIPVIQTILDHKKADQNDEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEI 122
Query: 131 QLKVVQLTS-SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDE 189
K + L+S ++ + L++ L P+I+IATP + L + D LK LV+DE
Sbjct: 123 --KCLNLSSGNVSGNLLKSLLTENPEILIATPAKLVDLLDAQDVNI----DRLKFLVIDE 176
Query: 190 ADLLLSYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGD 247
DL+L++GY++DL +S +P + Q LMSAT + D+ LK+ +P IL L +
Sbjct: 177 VDLVLTFGYQEDLTKISERLPLRKSLQTFLMSATLNDDIQHLKQQFCRSPAILKLNDDEV 236
Query: 248 VKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFG 307
KD+ + Q+++ E DK L + KL L++ K LIF N ID +RLKL LE+FG
Sbjct: 237 NKDQT---KLIQYYVKVGEFDKFLLCYVIFKLGLIKGKTLIFVNNIDRGYRLKLVLEQFG 293
Query: 308 IKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ-TKEKDQS-----DEGGHV---- 357
IKS ILN+ELP NSR HI+EEFN ++ LIATDDT+ KE+D+ E G V
Sbjct: 294 IKSCILNSELPANSRQHIVEEFNKNVYQLLIATDDTEYIKEEDEDLESEKTEDGLVEVVD 353
Query: 358 -------DSRKSKKHPKAKL--DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTG 408
D+ K +K PK + D E+GV RG+DFKNV V+NF++P A YVHRIGRT
Sbjct: 354 DSTVTTKDNAKKQKKPKLNVEKDKEYGVSRGVDFKNVACVLNFDLPTTAKSYVHRIGRTA 413
Query: 409 RAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA---------PFPLLAQN---- 455
RA +G S+S V P +K F + K + +D I+ F L N
Sbjct: 414 RAGKSGISISFVVP--LKEFGKHKPSMIKSAKKDEKILGRIIKQQAKLGFELQPYNFDIK 471
Query: 456 AVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLS 515
VE RYR ED ++VT++A+RE+R ++L+ E+L SEKLK HFE NP DL+ L+HDK+L
Sbjct: 472 QVEGFRYRMEDGFRAVTQVAIREARIKELKQELLASEKLKRHFEENPHDLESLRHDKELH 531
Query: 516 KKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFR-------KSD 568
HL+ VPDYLL ++ K + +KNS R+ G K + KSD
Sbjct: 532 PARVQQHLKRVPDYLLPETARKDNKKIGFVPF---HKNSHRKNGRVVKKKGNVQRKGKSD 588
Query: 569 PLKSF 573
PLKSF
Sbjct: 589 PLKSF 593
>gi|149047667|gb|EDM00337.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [Rattus norvegicus]
Length = 546
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 236/564 (41%), Positives = 331/564 (58%), Gaps = 44/564 (7%)
Query: 21 EAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAY 80
E +E FE +GLD RL+ A+ G +PTLIQ+ +IPL LEGKD++ARA+TGSGKT AY
Sbjct: 2 EDQEALGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAY 61
Query: 81 LLPLLHRLFNE--SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLT 138
+P+L L ++ + P + A LVLVPT+EL +Q S + L C V +V ++
Sbjct: 62 AIPMLQLLLHKKATGPVMEQAVRGLVLVPTKELARQAQSMIQQLASYCARDV--RVANVS 119
Query: 139 SSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGY 198
++ ++ RA L PD+V+ TP + L L+ DSL++LV+DEADLL S+G+
Sbjct: 120 AAEDSASQRAVLMEKPDVVVGTPSRILNHLQQKNLK---LRDSLELLVVDEADLLFSFGF 176
Query: 199 EDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ 258
ED+LK+L +PR Q LMSAT + DV LK+L+LHNP L L E P +Q
Sbjct: 177 EDELKSLLCHLPRIYQAFLMSATFNEDVQTLKELVLHNPVTLKLQE----SQLPGPDQLQ 232
Query: 259 QFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAEL 317
QF + C +E DK L + LLKL L++ KAL+F NT++ +RL+LFLE+F I S +LN EL
Sbjct: 233 QFQVVCETEEDKFLLLYALLKLSLIRGKALLFVNTLERGYRLRLFLEQFSIPSCVLNGEL 292
Query: 318 PQNSRLHILEEFNAGLFDYLIATD----DTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSE 373
P SR HI+ +FN GL+D +IATD Q K K Q + K KA D E
Sbjct: 293 PLRSRCHIISQFNQGLYDCVIATDAEILGPQVKAKRQG---------RGSKGDKAS-DPE 342
Query: 374 FGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKS 433
GV RGIDF +V V+NF++P A YVHR GRT RA N G ++ V P E +I+
Sbjct: 343 SGVARGIDFHHVSAVLNFDLPPTAEAYVHRAGRTARANNPGIVLTFVLPTEQSSLGKIEE 402
Query: 434 FVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEK 493
+ + + I+ P+ + +ES RYR D +SVTK A+RE+R ++++ E+L+SEK
Sbjct: 403 LLSGEGQ--APILLPYQFQMEE-IESFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEK 459
Query: 494 LKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKN 553
LK +FE NP+DL LL+HD L HL +VPDYL+ A A + +
Sbjct: 460 LKTYFEDNPRDLQLLRHDLPLHPAVVKPHLGNVPDYLVPA-----------ALRGLVHPR 508
Query: 554 SSRRQGP----RRKFRKSDPLKSF 573
RR+ P +K + +PL+ F
Sbjct: 509 KKRRKMPFSRKAKKVKTQNPLRDF 532
>gi|366992942|ref|XP_003676236.1| hypothetical protein NCAS_0D02940 [Naumovozyma castellii CBS 4309]
gi|342302102|emb|CCC69875.1| hypothetical protein NCAS_0D02940 [Naumovozyma castellii CBS 4309]
Length = 611
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 234/615 (38%), Positives = 347/615 (56%), Gaps = 64/615 (10%)
Query: 13 KQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGK-DVVARAK 71
K + E ++ +FE LD RL+ A+ G Q PTLIQ +IPL L+ K D++A+A
Sbjct: 6 KGSSASEVYIDDSATFESFQLDSRLLQAVKGFGFQHPTLIQSNAIPLALQQKRDIIAKAA 65
Query: 72 TGSGKTFAYLLPLLHRLFNESSPKSKLA------PAALVLVPTRELCQQVYSEVMALIEL 125
TGSGKT AYL+P++ + + K+ ++LVPTREL QQV + + +I
Sbjct: 66 TGSGKTLAYLIPVIQTILDYKKTKATSMDLEENDTLGIILVPTRELAQQVSNVLEKMILY 125
Query: 126 CKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKIL 185
C ++ + + +++ M S L + LA P+I++ATPG + L T + S D LK L
Sbjct: 126 CSNEI--RQLNVSADMSNSVLTSLLASKPEILVATPGKLINILETNI--SSISLDELKFL 181
Query: 186 VLDEADLLLSYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTLP 243
V+DE DL+L++GY+DDL +S +P + Q LMSAT + D+ +LKK +P IL
Sbjct: 182 VIDEVDLVLTFGYQDDLNKISEYLPLKKNLQTFLMSATLNDDIQELKKKFCRSPAILKFN 241
Query: 244 EVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFL 303
+ KD+ + Q+++ SE DK L + KL L++ K LIF N ID +RLKL L
Sbjct: 242 DDEINKDQT---KLIQYYVKVSEFDKFLLCYVIFKLGLIKGKTLIFVNNIDRGYRLKLVL 298
Query: 304 EKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ-TKEKDQ------------ 350
E+FGIKS ILN+ELP NSR HI+++FN ++ LIATDDT+ KE+D+
Sbjct: 299 EQFGIKSCILNSELPANSRQHIVDQFNKNIYSLLIATDDTEYIKEEDELENESKVEDVSG 358
Query: 351 --------------SDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQN 396
+D+ +++ KK + D E+GV RG+DFKNV V+NF++P
Sbjct: 359 EEKTEQNETLSTGNADDKVDINNDDKKKKQTFRKDKEYGVSRGVDFKNVACVLNFDLPTT 418
Query: 397 AAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA--------- 447
+ Y+HRIGRT RA +G ++S V P +K F + K + D I++
Sbjct: 419 SKSYIHRIGRTARAGQSGTAISFVVP--LKEFGKHKPSMCSTAKRDEKILSRIIKQQSKL 476
Query: 448 -----PFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNP 502
P+ + VE RYR ED ++VT++AVRE+R ++L+ E+L SEKLK HFE NP
Sbjct: 477 GLEMQPYSFDTKQ-VEGFRYRLEDGFRAVTQVAVREARVKELKQELLASEKLKRHFEENP 535
Query: 503 KDLDLLKHDKDLSKKPPASHLRDVPDYLL--DAKTQEA--CKMVKLARAAMGNKNSSRRQ 558
K+L L+HDK+L HL+ VP+YLL A++ + K V G K + + +
Sbjct: 536 KELQSLRHDKELHPARVQQHLKRVPEYLLPESARSSDGKKIKFVPFHNVKKGRKGNKKGK 595
Query: 559 GPRRKFRKSDPLKSF 573
+R+ KSDPLK+F
Sbjct: 596 VTKRRNGKSDPLKNF 610
>gi|402083785|gb|EJT78803.1| ATP-dependent RNA helicase DBP9 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 616
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 235/601 (39%), Positives = 339/601 (56%), Gaps = 61/601 (10%)
Query: 23 EEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLL 82
E+ SF ELGLD RL+ A+ ++ Q PTL+Q +IPL+L+GKDV+A+AKTGSGKT AY+L
Sbjct: 26 EQGPSFAELGLDPRLLQAVAQQAFQAPTLVQSKAIPLVLDGKDVLAKAKTGSGKTAAYVL 85
Query: 83 PLLHRLFNESSPKSKLAP-AALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSM 141
P+L + + A AAL+LVPTREL QV EV C +Q VV LT +
Sbjct: 86 PILQAILKRKQINNGDASIAALILVPTRELAVQVTKEVEKFSAFCAKDIQ--VVGLTDKL 143
Query: 142 PASDLRAAL-AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYED 200
AS R+ L + PD++++TP + + L D L LVLDEADL+LSYGY D
Sbjct: 144 SASVQRSLLLSNSPDVIVSTPSTAWHNIESSALAL----DKLTHLVLDEADLVLSYGYSD 199
Query: 201 DLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF 260
DL+ ++ +P+G Q ++ SAT + ++D LK L L + +L L E + Q+
Sbjct: 200 DLEKVAQALPKGVQTVMTSATLTDEIDSLKGLFLRDSVMLDLEE-----PDAEGSGATQY 254
Query: 261 WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 320
+ C E +K L + KL+L++ K +IF +D +RLKLF E+FGI+S ILN+ELP N
Sbjct: 255 VVKCGEDEKFLLAYIMFKLKLIKGKVIIFVGDVDRCYRLKLFFEQFGIRSCILNSELPVN 314
Query: 321 SRLHILEEFNAGLFDYLIATDDTQT------------KEKDQSDEGGHVD--------SR 360
SR+ ++EEFN ++D +IA+D+ + E + D+ G D SR
Sbjct: 315 SRISVVEEFNRNVYDIIIASDENEILGDEDVGEGSNKVEAESGDKAGDADEGDSKPKGSR 374
Query: 361 -KSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSL 419
K K+ K D ++GV RGIDFKNV V+NF++P A Y HRIGRT RA TG +S
Sbjct: 375 PKKKRRTGPKRDKQYGVSRGIDFKNVAVVVNFDLPLTATSYTHRIGRTARAGQTGMVLSF 434
Query: 420 VSPDEMKIFEEIKSFVGDDENEDSNIIA--------------PFPLLAQNAVESLRYRAE 465
P E+ F + D +D ++A P+ ++ VE RYR
Sbjct: 435 YVPKEL--FRKHIPTSIDSAEKDEKVLARIVKQQAKLGRELKPYH-FDRDQVEGFRYRMN 491
Query: 466 DVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLD-LLKHDKDLSKKPPASHLR 524
D ++VTK+AVRE+R ++LR E+L SEKLK HFE NP +L L +HD +L LR
Sbjct: 492 DALRAVTKVAVREARTRELRQELLKSEKLKRHFEENPAELQHLARHDSELRTARANPELR 551
Query: 525 DVPDYLLDAKTQEACKMVKLA----RAAMGNKNSSRR-----QGPRRKFRKSDPLKSFSA 575
VPDYLL + ++A ++ R + +K+ + +G + RK+DPL++F A
Sbjct: 552 HVPDYLLPKEGRKALSATEIGFVPLRKSASDKDRRTKYFRKGRGGKVGVRKADPLRTFKA 611
Query: 576 E 576
+
Sbjct: 612 K 612
>gi|408390101|gb|EKJ69512.1| hypothetical protein FPSE_10337 [Fusarium pseudograminearum CS3096]
Length = 615
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 226/600 (37%), Positives = 339/600 (56%), Gaps = 45/600 (7%)
Query: 9 SKEVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVA 68
S +V++ + + EEE SF +LGLD RL+ A+ ++ KPTL+Q+ +IPL L G+DV+A
Sbjct: 23 STDVEKFTKPAQKQEEETSFVDLGLDPRLLQAIAQQKFAKPTLVQRKAIPLALNGQDVLA 82
Query: 69 RAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKG 128
+A GSGKT AY+LPLL + + S AL+LVPTREL QV + C
Sbjct: 83 KADCGSGKTAAYVLPLLSSILKRKATDSTAFTTALILVPTRELADQVSKAIEQFASFCAK 142
Query: 129 QVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLD 188
+ +LT + + RA L+ PDIVI+TP + +++ L D L L+LD
Sbjct: 143 DIS--TAKLTDKVSSKVQRALLSNSPDIVISTPSTAWQNVNSSALS----IDKLTHLILD 196
Query: 189 EADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDV 248
EADL+LSYGY +DL+ LS +P+G Q ++MSAT S +VD LK + +P +L L E
Sbjct: 197 EADLVLSYGYSEDLENLSRSVPKGVQVMMMSATLSDEVDTLKGIFRRDPTLLDLKE---- 252
Query: 249 KDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGI 308
E + + QF C E +K L + KL+L++ K +IF + ID +RLKLF E+FGI
Sbjct: 253 -KEAEGEGITQFVAKCGEDEKFLLAYVIFKLKLIKGKCIIFVSDIDRCYRLKLFFEQFGI 311
Query: 309 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHV----DSRKSKK 364
+S ILN+ELP NSR+H++EEFN ++D +IA D+ D+ + D++KS +
Sbjct: 312 RSCILNSELPLNSRVHVVEEFNRHVYDIIIAADEKNEMLGDEEEPTETAEAEDDAKKSNE 371
Query: 365 HPKAKLDS---------------EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGR 409
A+ ++ E+GV RG+DFK V VINF++P A+ Y HRIGRT R
Sbjct: 372 GDDAETEAKRPKKKAKKSKGGDKEYGVSRGVDFKKVSAVINFDLPTTASAYTHRIGRTAR 431
Query: 410 AYNTGASVSLVSPDEM------------KIFEEIKSFVGDDENEDSNIIAPFPLLAQNAV 457
A TG ++S V P ++ + E+I + + + + + P+ + V
Sbjct: 432 AGQTGMALSFVVPKDLYRKHMPTSTPACENDEKIMARIIRQQAKRDKEVKPYNFNMKQ-V 490
Query: 458 ESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKK 517
+ RYR D ++VTK+A+RE+R ++LR E+L SEKLK +FE NP +L L+HD +L
Sbjct: 491 DPFRYRMNDALRAVTKVAIREARTRELRQELLKSEKLKRYFEENPTELSHLRHDGELRTA 550
Query: 518 PPASHLRDVPDYLL--DAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSFSA 575
+HL+ +P+YL+ D K + +A + +G + RK DPLK+F A
Sbjct: 551 RQQAHLKHIPEYLMPKDGKQALTEDVGFVAMRKDKKGKGKKGRGFKVGSRKRDPLKTFKA 610
>gi|45201374|ref|NP_986944.1| AGR278Cp [Ashbya gossypii ATCC 10895]
gi|74691680|sp|Q74ZC1.1|DBP9_ASHGO RecName: Full=ATP-dependent RNA helicase DBP9
gi|44986308|gb|AAS54768.1| AGR278Cp [Ashbya gossypii ATCC 10895]
gi|374110194|gb|AEY99099.1| FAGR278Cp [Ashbya gossypii FDAG1]
Length = 595
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 238/593 (40%), Positives = 340/593 (57%), Gaps = 53/593 (8%)
Query: 23 EEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGK-DVVARAKTGSGKTFAYL 81
+E K+F LDLRL +L G PTLIQ ++IPL LE K D++A+A TGSGKT AYL
Sbjct: 13 DESKTFSSFQLDLRLQQSLKSSGFHHPTLIQSSAIPLALEQKRDIIAKASTGSGKTLAYL 72
Query: 82 LPLLHRLFNESSPKS---KLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLT 138
+P++ + S + +VLVPTREL QQV + L+ C ++L + ++
Sbjct: 73 IPVVQTILEHKSTQGADRTTGTLGVVLVPTRELAQQVRVVLEKLVLYCSKDIRL--LNIS 130
Query: 139 SSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGY 198
+++ S L LA P+I+I+TP + K L LQ+ S D L+ LV+DE DL+L++GY
Sbjct: 131 ANVDDSVLGPLLAENPEIIISTPSQLVKILEGKHLQTISLRD-LRFLVIDEVDLILTFGY 189
Query: 199 EDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN 256
++DL +S +P + Q LMSAT + ++ +LK +P IL L D+ I KN
Sbjct: 190 QEDLLKISQYLPLKKNLQAFLMSATLNEEIQELKTKFCRSPAILKL------NDDEINKN 243
Query: 257 ---VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAIL 313
+ Q+++ SE DK L + KL L++ K +IF NTID +RLKL LE+FGI+S IL
Sbjct: 244 KNKLLQYYVKVSEFDKFLLCYVIFKLSLIKGKTIIFVNTIDRGYRLKLVLEQFGIRSCIL 303
Query: 314 NAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQ------SDEGGH----------- 356
N+ELP NSR HI++EFN ++ LIATDD + E++ +EG
Sbjct: 304 NSELPLNSRQHIVDEFNKNVYQLLIATDDNEYIEEEDEETVEAGEEGSEKLEEGGEKLEE 363
Query: 357 VDSRKSKKHPK---AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNT 413
+ S+ S + K AK D E+G RG+DF+NV V+NF++P A YVHRIGRT RA +
Sbjct: 364 ITSKTSSTNGKQKIAKKDKEYGASRGVDFQNVSCVLNFDLPTTAKSYVHRIGRTARAGKS 423
Query: 414 GASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA---------PFPLLAQN----AVESL 460
G ++S V P +K + + K + +D I+A F + N +E
Sbjct: 424 GTAISFVVP--LKEYGKHKPSMLVTAKKDEKILARVIKQQSKLGFQIEPYNFDVKQIEGF 481
Query: 461 RYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPA 520
RYR ED ++VT++AVRE+R ++L+ E+L SEKLK HFE NP DLD L+HDK+L
Sbjct: 482 RYRMEDGFRAVTQVAVREARVKELKQELLASEKLKRHFEENPHDLDSLRHDKELHPARVQ 541
Query: 521 SHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSF 573
HL+ VPDYLL +E K + KN + R+ RKSDPLK+F
Sbjct: 542 QHLKRVPDYLLPEAARETGKKIGFVPFHNPKKNRKGKVAKRKPGRKSDPLKNF 594
>gi|358365595|dbj|GAA82217.1| ATP dependent RNA helicase [Aspergillus kawachii IFO 4308]
Length = 617
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 238/622 (38%), Positives = 351/622 (56%), Gaps = 66/622 (10%)
Query: 4 SKEIPSKEVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEG 63
+ ++PS EV AE +EA E FE L LD RL AL K+ KPTL+Q +IPL L G
Sbjct: 7 ANDVPSPEV--AETKEAPDANEADFESLNLDPRLRQALIKEKFTKPTLVQAKAIPLALAG 64
Query: 64 KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKL-APAALVLVPTRELCQQVYSEVMAL 122
KD++ARAKTGSGKT AY+LP+L + + + L A L+LVPTREL +QV + V
Sbjct: 65 KDILARAKTGSGKTAAYVLPILQTILQKKAADPSLKATTGLILVPTRELAEQVQNVVTTF 124
Query: 123 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSL 182
C V + V LT + + R L+ PDIVI+TP + L L D+L
Sbjct: 125 AAFCGKDV--RSVNLTQKVSEAVQRTMLSDYPDIVISTPARVIANLGNSSLSL----DNL 178
Query: 183 KILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL 242
LV+DEADL+LSYGY++D+ ALS IPRG Q LMSAT +S+VD LK L +P +L L
Sbjct: 179 THLVIDEADLVLSYGYDEDINALSKAIPRGVQTFLMSATLTSEVDTLKGLFCRSPVVLKL 238
Query: 243 PEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLF 302
+ E V QF + C+E +K L + KL+L++ K +IF ID +RLKLF
Sbjct: 239 ED-----KEEKGAGVSQFVVKCAEDEKFLLTYVIFKLQLIKGKVIIFVGDIDRCYRLKLF 293
Query: 303 LEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ------------------ 344
LE+FG+KS +LN+ELP NSR+H+++EFN G++D +IA DD +
Sbjct: 294 LEQFGVKSCVLNSELPVNSRIHVVQEFNKGVYDIIIAADDQEVLGSKSKKAKNADADEEE 353
Query: 345 -------TKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNA 397
+ + ++++E +R K+ + ++G+ RGIDF+NV V+NF++P A
Sbjct: 354 EAAGVMGSSDDEEAEEDKSKSNRPDKRRKLTAKEKDYGISRGIDFQNVACVLNFDLPTTA 413
Query: 398 AGYVHRIGRTGRAYNTGASVSLVSPDEM------------KIFEEIKSFVGDDENEDSNI 445
Y HRIGRTGR TG ++S V P + K E + + + +++ +
Sbjct: 414 KSYTHRIGRTGRGGKTGMALSFVVPADQYGKHKPTSFPTAKHDEAVLAKIVKRQSKHGHE 473
Query: 446 IAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDL 505
+ P+ + V++ RYR D +++T++AV+E+RA+++R E++ SEKLK HFE NP +L
Sbjct: 474 VKPYH-FEMSQVDAFRYRMTDGLRAITRLAVQEARAREIRQELVKSEKLKRHFEDNPDEL 532
Query: 506 DLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNS----------S 555
L+HD +L HL+ +P+YL+ +K ++ + KNS +
Sbjct: 533 RQLRHDGELRSARIQPHLKHIPEYLMPSKGRKGISSEDVGFVGF-RKNSDNRIRKARDKN 591
Query: 556 RRQGPRRK---FRKSDPLKSFS 574
R +G RK RK DPLK+F+
Sbjct: 592 RAKGKGRKPSGVRKVDPLKTFN 613
>gi|242010319|ref|XP_002425916.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
gi|212509892|gb|EEB13178.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
Length = 544
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 205/514 (39%), Positives = 318/514 (61%), Gaps = 25/514 (4%)
Query: 21 EAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAY 80
E + K F E+ +D R++ A+ + G +PTLIQ+ +IPLILEGK+++ RA+TGSGKT A+
Sbjct: 2 ENNKVKGFHEMEIDDRILKAIARLGWIEPTLIQEKAIPLILEGKNILLRARTGSGKTAAF 61
Query: 81 LLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSS 140
+P++ ++ + AL+L P++ELC Q+Y + L C +V + ++
Sbjct: 62 AIPVIQKILSAKPLSLNQVIRALILAPSKELCSQIYQNFIELTVKCSREVS--CLDISQH 119
Query: 141 MPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYED 200
+ S + L PD+VIATP + L+ Q+ + DSL++L++DEADL+ S+G+E+
Sbjct: 120 LELSAQKPLLVEGPDVVIATPS---RALAHLKAQNMTLKDSLEMLIVDEADLVFSFGFEN 176
Query: 201 DLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-VQQ 259
DLK + + +P Q +L SAT + DV LK+L L NP IL L E E+ P +
Sbjct: 177 DLKQILSYLPDVYQAVLASATLTKDVLNLKELTLQNPVILKLKE-----PELAPTTQLAH 231
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+ IS E +K + + LLKL L++ K +IF N +D +RLKL+LE+F I S ILN+ELP
Sbjct: 232 YHISAEEEEKAVILYVLLKLSLIRGKTIIFVNHVDKCYRLKLYLEQFNIPSCILNSELPA 291
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
+ R H + ++N G++D +IA+D E D G ++++RK KK D EFGV+RG
Sbjct: 292 SMRCHAVTQYNLGVYDLIIASD-----ENIADDPGANLNNRKRKK------DKEFGVIRG 340
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDE 439
IDF+ V VINF+ P+ Y+HR+GRT R N G ++S V+ E ++FEE+++ +
Sbjct: 341 IDFQFVSNVINFDFPKTVVSYIHRVGRTARGNNEGTALSFVASKERQLFEEVENHLKMSY 400
Query: 440 NEDSN--IIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAH 497
+ DSN +I + + VE RYR+ D ++VTKIAVRE+R +++R EILN KLK++
Sbjct: 401 DIDSNQSVIRAYEFKMEE-VEGFRYRSRDAWRAVTKIAVREARLKEIRQEILNDNKLKSY 459
Query: 498 FEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 531
F+ NP+DL L+HD+ L HL +VP+Y++
Sbjct: 460 FKDNPRDLQCLRHDRALHTVKQQQHLANVPEYII 493
>gi|21312650|ref|NP_080814.1| probable ATP-dependent RNA helicase DDX56 [Mus musculus]
gi|20139152|sp|Q9D0R4.1|DDX56_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX56; AltName:
Full=ATP-dependent 61 kDa nucleolar RNA helicase;
AltName: Full=DEAD box protein 56
gi|12847068|dbj|BAB27426.1| unnamed protein product [Mus musculus]
gi|17390686|gb|AAH18291.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [Mus musculus]
gi|26345784|dbj|BAC36543.1| unnamed protein product [Mus musculus]
gi|26346376|dbj|BAC36839.1| unnamed protein product [Mus musculus]
gi|74143954|dbj|BAE41278.1| unnamed protein product [Mus musculus]
gi|74204609|dbj|BAE35375.1| unnamed protein product [Mus musculus]
gi|74216851|dbj|BAE26549.1| unnamed protein product [Mus musculus]
gi|148708631|gb|EDL40578.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [Mus musculus]
Length = 546
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 232/560 (41%), Positives = 331/560 (59%), Gaps = 36/560 (6%)
Query: 21 EAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAY 80
E +E FE +GLD RL+ A+ G +PTLIQ+ +IPL LEGKD++ARA+TGSGKT AY
Sbjct: 2 EDQEALGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAY 61
Query: 81 LLPLLHRLFNE--SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLT 138
+P+L L ++ + P + A LVLVPT+EL +Q + + L C V +V ++
Sbjct: 62 AIPMLQSLLHKKATGPVMEQAVRGLVLVPTKELARQAQAMIQQLAAYCARDV--RVANVS 119
Query: 139 SSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGY 198
++ ++ RA L PD+V+ TP + L L+ DSL++LV+DEADLL S+G+
Sbjct: 120 AAEDSASQRAVLMEKPDVVVGTPSRVLSHLQQNTLK---LRDSLELLVVDEADLLFSFGF 176
Query: 199 EDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ 258
ED+LK+L +PR Q LMSAT + DV LK+L+LHNP L L E P +Q
Sbjct: 177 EDELKSLLCHLPRIYQAFLMSATFNEDVQTLKELVLHNPVTLKLQE----SQLPGPDQLQ 232
Query: 259 QFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAEL 317
QF + C +E DK L + LLKL L++ KAL+F NT++ +RL+LFLE+F I S +LN EL
Sbjct: 233 QFQVVCETEEDKFLLLYALLKLSLIRGKALLFVNTLERGYRLRLFLEQFSIPSCVLNGEL 292
Query: 318 PQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVV 377
P SR HI+ +FN GL+D +IATD + + G R SK + + D E GV
Sbjct: 293 PLRSRCHIISQFNQGLYDCVIATDAEILGPQVKGKRRG----RGSKGNKAS--DPESGVA 346
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RGIDF +V V+NF++P A YVHR GRT RA N G ++ V P E +I+ +
Sbjct: 347 RGIDFHHVSAVLNFDLPPTAEAYVHRAGRTARANNPGIVLTFVLPAEQPFLGKIEDLLSG 406
Query: 438 DENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAH 497
+ ++ I+ P+ + +ES RYR D +SVTK A+RE+R ++++ E+L+SEKLK +
Sbjct: 407 E--GEAPILLPYQFQMEE-IESFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTY 463
Query: 498 FEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRR 557
FE NP+DL LL+HD L HL VPDYL+ A A + + RR
Sbjct: 464 FEDNPRDLQLLRHDLPLHPAVVKPHLGHVPDYLVPA-----------ALRGLVHPRKKRR 512
Query: 558 QGP----RRKFRKSDPLKSF 573
+ P +K + +PL+ F
Sbjct: 513 KVPFSRKAKKVKAQNPLRDF 532
>gi|428171692|gb|EKX40607.1| hypothetical protein GUITHDRAFT_46656, partial [Guillardia theta
CCMP2712]
Length = 525
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 218/548 (39%), Positives = 328/548 (59%), Gaps = 33/548 (6%)
Query: 33 LDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRL---- 88
LD RL A+ G Q+PTLIQ +IPL L+GKD++A+AKTGSGKT AY LP+L ++
Sbjct: 1 LDDRLKKAIAHMGWQQPTLIQTQAIPLALQGKDILAKAKTGSGKTGAYALPILQKILQSE 60
Query: 89 -FNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+N+++ + P A+VLVPTREL +QV ELC + + +T+ + +
Sbjct: 61 GYNKNTRIERSGPVAVVLVPTRELVEQVRQ---VFSELCFFVPSVTLAAITADQSLAAQK 117
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
+ L P ++IATP + + + L + +S +++VLDEADLLLS+G+ED++K+++
Sbjct: 118 SILLTKPHVLIATPSRLDQHVK---LDNVLLRESTEMIVLDEADLLLSFGFEDEIKSIAG 174
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 267
+P CQC+LMSAT S D +KL+ L+++NP L + +E + QF + CS+R
Sbjct: 175 SLPNICQCMLMSATLSEDTEKLQALVMNNPVTLKAED-----NESAQGRLAQFSLRCSQR 229
Query: 268 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 327
DK L LLKL ++Q K L F N +D + LKLFLE+F I++A+LN+ELPQNSR+ I++
Sbjct: 230 DKFLISYVLLKLGILQGKVLFFVNDVDRCYELKLFLEQFSIRAAVLNSELPQNSRMSIIQ 289
Query: 328 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 387
FN G ++Y ++ ++ + +K K LD ++GV+RG+DFK V
Sbjct: 290 GFNRGFYNYEEEEEEASEDDESEE-------EEVEEKTGKRDLD-DYGVMRGVDFKLVDA 341
Query: 388 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA 447
V+NFE+P+ Y HR+GRT RA G ++SLVSP+E+ E G +I
Sbjct: 342 VVNFELPRTLRAYTHRVGRTARAGQNGTALSLVSPEEVGRLE---GLAGKQAERGMQVIE 398
Query: 448 PFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDL 507
P P Q VE RYRAED + VTK+A++ +R +++ +E+LNS+ LK HF+ NP+DL
Sbjct: 399 PLPFNLQQ-VEGFRYRAEDSLRRVTKLAIKRARLREIESELLNSKTLKEHFQHNPQDLRA 457
Query: 508 LKHDKDLSKKPPASHLRDVPDYLL--DAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFR 565
L+HD+ L+ +HL VPDYLL +TQ + R A ++S +RK
Sbjct: 458 LRHDRTLAPNRQMAHLAKVPDYLLPPSLRTQVMQSKREAKRRA---RDSLPVNSKKRKKE 514
Query: 566 KSDPLKSF 573
+DPLK+F
Sbjct: 515 GADPLKTF 522
>gi|19076031|ref|NP_588531.1| ATP-dependent RNA helicase Dbp9 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|74676034|sp|O60080.1|DBP9_SCHPO RecName: Full=ATP-dependent RNA helicase dbp9
gi|3184061|emb|CAA19304.1| ATP-dependent RNA helicase Dbp9 (predicted) [Schizosaccharomyces
pombe]
Length = 595
Score = 380 bits (976), Expect = e-102, Method: Compositional matrix adjust.
Identities = 239/608 (39%), Positives = 337/608 (55%), Gaps = 80/608 (13%)
Query: 21 EAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAY 80
E EK+F + LD RL A++K +KPT +Q +IPL LEGKD+VA+A+TGSGKT AY
Sbjct: 9 EESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAY 68
Query: 81 LLPLLHRLFNESS-PKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTS 139
L+P+L L + +++ AL+LVPTREL QQVY+ + L C ++ V S
Sbjct: 69 LIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNS 128
Query: 140 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE 199
S R L PDIVIATP +++GVL D LK LV+DEADL+LS+GY
Sbjct: 129 SDTVQ--RPLLLDLPDIVIATPSRCVVHVASGVLPL----DKLKFLVIDEADLMLSFGYN 182
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
+D+K LS +PRG Q LMSAT S ++ L+KL+ NP+IL VKD+ + Q
Sbjct: 183 EDMKTLSRSLPRGTQSFLMSATLSKNIASLQKLVCRNPFILA------VKDKEASGKLTQ 236
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+ + CSE+DK L LLKL L++ K LIF N I+ +RLKLFLE+FG+KS +LN+ELP
Sbjct: 237 YVVKCSEQDKFLLAYILLKLRLIKGKILIFVNEINRCYRLKLFLEQFGLKSLVLNSELPV 296
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQ--------------TKEKDQSDEGGHVDSRKSKKH 365
NSRLHILE++N GL+ +IATD++ +E+ S + +D K +++
Sbjct: 297 NSRLHILEQYNKGLYQIIIATDESGMMGEIEELENNVDFVEEEVISTDQPTLDKMKDQEN 356
Query: 366 PKAKLDS-------------------EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGR 406
+S E+GV RG+DF+NV V+NF+MP N Y+HRIGR
Sbjct: 357 ADVNDESILAAAKDKSKKKKRVKQDKEYGVARGLDFENVACVLNFDMPSNTKSYIHRIGR 416
Query: 407 TGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDE-------NEDSNI----------IAPF 449
T RA G ++S V P KS VG + +D ++ + P+
Sbjct: 417 TARAGKPGTAMSFVVP---------KSEVGKHKPTSLESCKKDESVLRRLEKKQISLQPY 467
Query: 450 PLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLK 509
+N +++ RYR ED ++VT +AV +RA +L+ E+L SEKLK++F NP +L L
Sbjct: 468 S-FDKNQIDAFRYRMEDALRAVTTVAVSAARAAELKQELLISEKLKSYFAENPDELLSLT 526
Query: 510 HDKDLSKK--PPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNS--SRRQGPRRKFR 565
HD S + HLR VP+YLL Q K + N+ R+ P+
Sbjct: 527 HDTVSSVRLGHTQRHLRHVPEYLLPKGMQAVNKDIGFVPFKKNNRRKVFKSRKNPK---H 583
Query: 566 KSDPLKSF 573
+ DPL+S
Sbjct: 584 RHDPLRSM 591
>gi|448533726|ref|XP_003870686.1| DEAD-box helicase [Candida orthopsilosis Co 90-125]
gi|380355041|emb|CCG24557.1| DEAD-box helicase [Candida orthopsilosis]
Length = 570
Score = 380 bits (975), Expect = e-102, Method: Compositional matrix adjust.
Identities = 223/571 (39%), Positives = 340/571 (59%), Gaps = 35/571 (6%)
Query: 23 EEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGK-DVVARAKTGSGKTFAYL 81
+E+ +++ L LD RL+ A+++ G + PTLIQ ++IPL LE K D++A+A TGSGKT AY
Sbjct: 13 DEDTTWKSLNLDPRLLQAIDQLGFENPTLIQSSAIPLALEEKRDIIAKASTGSGKTAAYA 72
Query: 82 LPLLHRLF-NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSS 140
+P++ L + S P K +++LVPTREL QV+ + LI+ ++ ++ L+SS
Sbjct: 73 IPVIQNLLLDNSGPGIK----SIILVPTRELSNQVFQFMEQLIKHSNKKIG--ILNLSSS 126
Query: 141 MPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYED 200
L + LA P+I+I+TP + + L + S++ L +DE DL+LS+GY +
Sbjct: 127 YSDQVLNSLLANKPEIIISTPNKLIQILEMNDEKIPIDLSSVRNLTIDEVDLILSFGYLE 186
Query: 201 DLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ 258
DL L + +P + Q LMSAT + D+++LK P IL L + D+++
Sbjct: 187 DLAKLESYLPVKKNLQTFLMSATINDDINELKTKFCTKPAILKLDDEQSSNDKLV----- 241
Query: 259 QFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELP 318
QF+ +E DK L + KL L++ K ++F N ID +RLKLFLE+FGI+ ILN+ELP
Sbjct: 242 QFYAKTTEFDKFLLSYVIFKLNLIKGKTIVFVNNIDRGYRLKLFLEQFGIRCCILNSELP 301
Query: 319 QNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSD---EGGHVDSRKSKKHPKAKLDSEFG 375
NSRLHI+EEFN ++ LIATD+ EKD+ + E G ++ K ++K D E+G
Sbjct: 302 INSRLHIVEEFNKNVYHLLIATDEISV-EKDEGENDVEEGKSAQKEETKSKRSKKDKEYG 360
Query: 376 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSP------------D 423
V RG+DFKNV V+NF++P + YVHRIGRT RA +G ++S V P
Sbjct: 361 VSRGVDFKNVACVLNFDLPTTSKAYVHRIGRTARAGKSGMALSFVIPLKEVGKHKTATLS 420
Query: 424 EMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQD 483
K E+I S + + ++ I P+ VE RYRA+D ++VT+ A+RE+R ++
Sbjct: 421 TAKRDEKILSKIVKQQEKNGFEIKPYQ-FDMKQVEGFRYRADDAFRAVTQTAIREARVKE 479
Query: 484 LRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVK 543
L+NE++NSEKLK F+ NP++L L+HDK+L +HL+++P+YLL + K +
Sbjct: 480 LKNELINSEKLKRFFQENPQNLASLRHDKELHPARVQAHLKNLPEYLLPESARSDVKNIG 539
Query: 544 LARAAMGNK-NSSRRQGPRRKFRKSDPLKSF 573
NK N R++G + RK DPLK+F
Sbjct: 540 FVPFHNKNKVNKYRKKGKSK--RKQDPLKTF 568
>gi|406868160|gb|EKD21197.1| putative ATP-dependent RNA helicase dbp9 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 590
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 234/597 (39%), Positives = 336/597 (56%), Gaps = 79/597 (13%)
Query: 23 EEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLL 82
+E+ +F LGLD RL+ + K+ Q PTL+Q +IPL LEG+D++ARAKTG+GKT
Sbjct: 21 KEDATFAALGLDSRLLQGIAKQNFQTPTLVQSKAIPLALEGRDILARAKTGTGKT----- 75
Query: 83 PLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMP 142
A +AL+LVPTREL QV V + C ++ + V L +
Sbjct: 76 ---------------AATSALILVPTRELADQVIKVVESFSAFCTKEI--RAVNLAQKVS 118
Query: 143 ASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDD 201
+ LR+ LA PDIVIATP L+T +FS ++L LV+DEADL+LSYGY++D
Sbjct: 119 DAVLRSLLADSPDIVIATPARASMNLNTA-----AFSLENLAHLVIDEADLVLSYGYDED 173
Query: 202 LKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW 261
L+ ++ ++P+G Q +LMSAT +S+V+ LK L NP +L L + EV + V QF
Sbjct: 174 LQNVAKIMPKGVQTILMSATLTSEVETLKGLFCRNPVVLKL-----EEAEVEGEGVSQFV 228
Query: 262 ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 321
+ C+E +K L + KL+L++ K +IF ID +RLKLFLE+FG +S ILN+ELP NS
Sbjct: 229 VKCAEDEKFLLAYVIFKLKLIKGKCIIFVGDIDRCYRLKLFLEQFGTRSCILNSELPVNS 288
Query: 322 RLHILEEFNAGLFDYLIATD-------------DTQTKEKDQSDEGGHVDSRKS------ 362
R+H++EEFN ++D +IA+D D T E D V K+
Sbjct: 289 RIHVVEEFNKNVYDIIIASDEHEVLGDEDEPKEDNGTNEAVAEDGTAAVKKDKNAEPAAQ 348
Query: 363 ---KKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSL 419
KK K D E+GV RGIDFKNV V+NF++P ++ Y HRIGRT RA TG ++S
Sbjct: 349 PSKKKRRTVKKDKEYGVSRGIDFKNVACVLNFDLPTSSKSYTHRIGRTARAGQTGMALSF 408
Query: 420 VSPDEM------------KIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDV 467
V P E+ K E+I + + + + + P+ + V++ RYR D
Sbjct: 409 VIPKELYRKHKPTSIQSAKDDEKILAKIVKHQAKKGKEVKPYNFDMKQ-VDAFRYRMGDA 467
Query: 468 AKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVP 527
++VT IA+RE+R ++LR E++ SEKLK HFE NP+DL L+HD +L SH++ VP
Sbjct: 468 LRAVTGIAIREARTRELRQELIKSEKLKRHFEENPEDLHHLRHDGELRAARVQSHMKHVP 527
Query: 528 DYLLDAKTQEACKMVKLA----RAAMGNKNSSRRQGPRRKF-------RKSDPLKSF 573
+YLL + ++A ++ R N+ R R K RK DPLK+F
Sbjct: 528 EYLLPKEGRKALTSGEIGFVGIRKTTDNRIRKARAVNRGKGKGKKVIGRKMDPLKTF 584
>gi|198434305|ref|XP_002132137.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 56
[Ciona intestinalis]
Length = 570
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 223/578 (38%), Positives = 332/578 (57%), Gaps = 37/578 (6%)
Query: 17 EEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGK 76
E++A +++ F E+GLD R++ A+ + G PTLIQ+ +IPL + GKD+++RA+TGSGK
Sbjct: 3 EDDAATQDKVEFHEMGLDDRILKAIAEAGWASPTLIQEKAIPLAINGKDILSRARTGSGK 62
Query: 77 TFAYLLPLLHRLFN----ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQL 132
T AY +P++ +L N + + LVLVP+REL Q Y+ + L C V
Sbjct: 63 TAAYAVPIIQQLLNLKNTTQEDEYEQEVRGLVLVPSRELSGQAYNMMQQLTTSCSRDVT- 121
Query: 133 KVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADL 192
+ ++ + L+ LA PDIV+ TP + + G L S ++ LVLDEADL
Sbjct: 122 -SIDVSMEGDPNLLKPLLAVKPDIVVGTPSRVLAHVRAGNLTLAS----VRWLVLDEADL 176
Query: 193 LLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEV 252
L S+GYEDDLK L +P Q LMSAT S DV+ LKKL+L+NP L L E E
Sbjct: 177 LFSFGYEDDLKILLKHLPSSYQSFLMSATLSEDVEALKKLVLNNPVTLNLSE------EE 230
Query: 253 IPKN--VQQFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIK 309
+P + Q+ + C SE DK L I L KL+LV+ K+L+F NTI+ +RLKLFLE+F I
Sbjct: 231 LPMTDKLTQYHVFCESEDDKYLLIYALNKLKLVRGKSLLFVNTINKCYRLKLFLEQFSIF 290
Query: 310 SAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAK 369
+LN+ELP ++R H+++++N GL+DY+IATD++ S+ + K K
Sbjct: 291 CCVLNSELPVSTRCHVVQQYNEGLYDYIIATDESAVVASTVSETAPEIKKTGKHKKKKLT 350
Query: 370 LDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFE 429
E+GV RGIDF+NV VINF+ P Y+HR+GRT R +G ++S V +EM++
Sbjct: 351 KAKEYGVSRGIDFQNVSNVINFDFPPTVGSYIHRVGRTARGDKSGTALSFVVSEEMELLS 410
Query: 430 EIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEIL 489
+ ++ + N D ++ P+ + +E RYR +D ++VTK A+ ++R ++LR E+L
Sbjct: 411 QAQARLS--SNADDQVMKPYQ-FKMDEIEGFRYRCKDAIRAVTKRAIHDARVKELRREML 467
Query: 490 NSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAM 549
NS KLK +FE NP DL +L+HD H+++VP+YL+ + V RA+
Sbjct: 468 NSAKLKTYFEENPYDLQVLRHDAASRPMKVKKHMKNVPEYLIPPTLKGLYSGVS-TRASQ 526
Query: 550 GNKNSSRRQGPRR------------KFRK--SDPLKSF 573
S PR+ K++K DPLKSF
Sbjct: 527 HQPPPSHDMKPRKRSSVRVMGKPNPKYKKKLEDPLKSF 564
>gi|350634532|gb|EHA22894.1| hypothetical protein ASPNIDRAFT_46984 [Aspergillus niger ATCC 1015]
Length = 632
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 239/620 (38%), Positives = 351/620 (56%), Gaps = 63/620 (10%)
Query: 4 SKEIPSKEVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEG 63
+ ++PS EV AE +E +E FE L LD RL AL K+ KPT +Q +IPL L G
Sbjct: 23 ANDVPSPEV--AETKETSDADEADFESLNLDPRLRQALIKEKFTKPTPVQAKAIPLALAG 80
Query: 64 KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKL-APAALVLVPTRELCQQVYSEVMAL 122
KD++ARAKTGSGKT AY+LP+L + + + L A L+LVPTREL +QV V
Sbjct: 81 KDILARAKTGSGKTAAYVLPILQTILQKKAADPSLKATTGLILVPTRELAEQVQKVVTTF 140
Query: 123 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSL 182
C V + V LT + + R L+ PDIVI+TP + L L D+L
Sbjct: 141 AAFCGKDV--RSVNLTQKVSEAVQRTMLSDYPDIVISTPARVIANLGNSSLSL----DNL 194
Query: 183 KILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL 242
LV+DEADL+LSYGY++D+ ALS IPRG Q LMSAT +S+VD LK L +P +L L
Sbjct: 195 THLVIDEADLVLSYGYDEDINALSKAIPRGVQTFLMSATLTSEVDTLKGLFCRSPVVLKL 254
Query: 243 PEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLF 302
+ E V QF + C+E +K L + KL+L++ K +IF ID +RLKLF
Sbjct: 255 ED-----KEEKGAGVSQFVVKCAEDEKFLLTYVIFKLQLIKGKVIIFVGDIDRCYRLKLF 309
Query: 303 LEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ---TKEK----------- 348
LE+FG+KS +LN+ELP NSR+H+++EFN G++D +IA DD + +K K
Sbjct: 310 LEQFGVKSCVLNSELPVNSRIHVVQEFNKGVYDIIIAADDQEVLGSKSKKAKNAGADEEE 369
Query: 349 -------DQSDEGGHVDSRKSKKHPKAKL---DSEFGVVRGIDFKNVHTVINFEMPQNAA 398
DE D + ++ + KL + ++G+ RGIDF+NV V+NF++P A
Sbjct: 370 EAAGVMGSSDDEEAEDDKKSNRPDKRRKLTAKEKDYGISRGIDFQNVACVLNFDLPTTAK 429
Query: 399 GYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF------------VGDDENEDSNII 446
Y HRIGRTGR TG ++S V P + + SF + +++ + +
Sbjct: 430 SYTHRIGRTGRGGKTGMALSFVVPADQYGKHKPTSFPTAKHDEAVLAKIVKRQSKHGHEV 489
Query: 447 APFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLD 506
P+ + V++ RYR D +++T++AV+E+RA+++R E++ SEKLK HFE NP +L
Sbjct: 490 KPYH-FEMSQVDAFRYRMTDGLRAITRLAVQEARAREIRQELVKSEKLKRHFEDNPDELR 548
Query: 507 LLKHDKDLSKKPPASHLRDVPDYLLDAK-----TQEACKMVKLARAAMGN----KNSSRR 557
L+HD +L HL+ +P+YL+ +K + E V +++ ++ +R
Sbjct: 549 QLRHDGELRSARIQPHLKHIPEYLMPSKGRKGISSEDVGFVGFRKSSDNRIRKARDKNRA 608
Query: 558 QGPRRK---FRKSDPLKSFS 574
+G RK RK DPLK+F+
Sbjct: 609 KGKGRKPSGVRKVDPLKTFN 628
>gi|354485265|ref|XP_003504804.1| PREDICTED: probable ATP-dependent RNA helicase DDX56 [Cricetulus
griseus]
gi|344252527|gb|EGW08631.1| putative ATP-dependent RNA helicase DDX56 [Cricetulus griseus]
Length = 545
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 235/560 (41%), Positives = 326/560 (58%), Gaps = 37/560 (6%)
Query: 21 EAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAY 80
E +E FE +GLD RL+ A+ G +PTLIQ+ +IPL LEGKD++ARA+TGSGKT AY
Sbjct: 2 EDQEPLGFEHMGLDPRLLQAVADLGWSQPTLIQEKAIPLALEGKDLLARARTGSGKTAAY 61
Query: 81 LLPLLHRLFNE--SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLT 138
+P+L L ++ + P + A LVLVPT+EL +Q S + L C V +V ++
Sbjct: 62 AIPMLQLLLHKKATGPVMEQAVRGLVLVPTKELARQAQSMMQQLAAYCARDV--RVANVS 119
Query: 139 SSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGY 198
++ ++ RA L PD+V+ TP + L L+ DSL++LV+DEADLL S+G+
Sbjct: 120 AAEDSASQRAVLMEKPDVVVGTPSRILNHLQQDNLK---LRDSLELLVIDEADLLFSFGF 176
Query: 199 EDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ 258
ED+LK L +PR Q LMSAT + DV LK+L+LHNP L L E P +Q
Sbjct: 177 EDELKGLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE----SQLPGPDQLQ 232
Query: 259 QFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAEL 317
QF + C +E DK L + LLKL L++ KAL+F NT++ +RL+LFLE+F I S +LN EL
Sbjct: 233 QFQVVCETEEDKFLLLYALLKLSLIRGKALLFVNTLERGYRLRLFLEQFSIPSCVLNGEL 292
Query: 318 PQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVV 377
P SR HI+ +FN G +D +IATD E G R SK A D E GV
Sbjct: 293 PLRSRCHIISQFNQGFYDCVIATD----AEILGPPVKGKRRGRGSKGDKAA--DPESGVA 346
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RGIDF +V V+NF++P YVHR GRT RA N G ++ V P E +I++ +
Sbjct: 347 RGIDFHHVSAVLNFDLPPTPEAYVHRAGRTARANNPGIVLTFVLPTEQSCLAKIEALLS- 405
Query: 438 DENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAH 497
E I+ P+ + +ES RYR D +SVTK A+RE+R ++++ E+L+SEKLK +
Sbjct: 406 --GEGEAILLPYQFRMEE-IESFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTY 462
Query: 498 FEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRR 557
FE NP+DL LL+HD L HL +VPDYL+ A A + + RR
Sbjct: 463 FEDNPRDLQLLRHDLPLHPAVVKPHLGNVPDYLVPA-----------ALRGIVHPRKKRR 511
Query: 558 QGPR----RKFRKSDPLKSF 573
+ P +K R +PL+ F
Sbjct: 512 KLPPCKKVKKVRTQNPLRDF 531
>gi|444315237|ref|XP_004178276.1| hypothetical protein TBLA_0A09740 [Tetrapisispora blattae CBS 6284]
gi|387511315|emb|CCH58757.1| hypothetical protein TBLA_0A09740 [Tetrapisispora blattae CBS 6284]
Length = 617
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 227/616 (36%), Positives = 345/616 (56%), Gaps = 72/616 (11%)
Query: 20 AEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLIL-EGKDVVARAKTGSGKTF 78
A +E SFE LD RL+ A+ G PTLIQ +IPL L E +D++A+A TGSGKT
Sbjct: 11 AYLDESVSFESFQLDSRLLQAIKGSGFHNPTLIQSHAIPLALQEKRDIIAKAATGSGKTL 70
Query: 79 AYLLPLLHRLFN-----ESSPKSKLAPAA---LVLVPTRELCQQVYSEVMALIELCKGQV 130
AY++P++ + N E++ + + ++ ++LVPTREL QQV + +I C +
Sbjct: 71 AYVIPVIQTILNYKRTLENNQGTDITDSSTLGIILVPTRELAQQVLDVIEKMILYCSNDI 130
Query: 131 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEA 190
K + ++ MP S L L+ P+I+++TP + L T + + D+L+ LV+DE
Sbjct: 131 --KALNISKDMPPSVLSTMLSESPEIIVSTPAKLNTLLETN--NNSLYLDNLQFLVIDEV 186
Query: 191 DLLLSYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDV 248
DL+L++GY+DDLK ++ +P + Q LMSAT + D+ +LK+ +P I+ +
Sbjct: 187 DLVLTFGYQDDLKNITQYLPLKKNLQTFLMSATLNDDIQELKQQYCRSPAIIKFNDDQIA 246
Query: 249 KDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGI 308
KD+ + Q++++ SE DK L + KL L++ K LIF N ID +RLKL LE+FGI
Sbjct: 247 KDQ---SKLLQYYVTVSEFDKFLLTYVIFKLNLIKGKTLIFVNNIDRGYRLKLVLEQFGI 303
Query: 309 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ--------TKEKDQSDEG------ 354
KS ILN ELP NSR HI+E+FN ++ LIATDDT+ ++ Q+D+
Sbjct: 304 KSCILNNELPANSRQHIVEQFNKNVYRLLIATDDTEYIKDEEEQDDDEPQNDKTKVVEES 363
Query: 355 --------------------GHVDSRK-SKKHPKAKLDSEFGVVRGIDFKNVHTVINFEM 393
V S+K +K + K K D E+GV RG+DF+N+ V+NF++
Sbjct: 364 EVVEKESDKESDKDDDNSTQNEVKSKKETKNNLKVKKDKEYGVSRGVDFQNIACVLNFDL 423
Query: 394 PQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNI-------- 445
P + YVHRIGRT RA +G ++S V P +K F + K+ + D I
Sbjct: 424 PTTSKSYVHRIGRTARAGKSGTAISFVIP--LKEFGKHKASMCPTTKRDEKILQRIIKQQ 481
Query: 446 ------IAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFE 499
I P+ + +E RYR ED ++VT++AVRE+R ++L+ E+L S+KLK HFE
Sbjct: 482 NKLGLEIQPYAFDIK-QIEGFRYRMEDGFRAVTQVAVREARIKELKQELLASDKLKRHFE 540
Query: 500 VNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQG 559
NP++L+ L+HDK+L HL+ VPDYLL + + + + ++G
Sbjct: 541 ENPQELNSLRHDKELHPARIQQHLKRVPDYLLPEGAKNGNTNIGFVPFHKNGRRKNFKKG 600
Query: 560 --PRRKFRKSDPLKSF 573
+RK KSDPLK+F
Sbjct: 601 RVNKRKHGKSDPLKNF 616
>gi|393221845|gb|EJD07329.1| ATP-dependent RNA helicase dbp9 [Fomitiporia mediterranea MF3/22]
Length = 633
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 241/631 (38%), Positives = 340/631 (53%), Gaps = 109/631 (17%)
Query: 33 LDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNES 92
LD RL+ AL G +PTL+Q +IPL LEG+D++ARA+TGSGKT +Y +PL ++ +
Sbjct: 20 LDARLLRALADMGFARPTLVQAQAIPLALEGRDILARARTGSGKTASYCVPLAQKILRKK 79
Query: 93 SPKSKLAPA-----ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
S PA ALVLVPT+EL QV + L+ C+ ++ VV L S R
Sbjct: 80 DAFSIEDPARQAVRALVLVPTKELADQVAKHLRQLLAYCEKEIV--VVNLVSGTSTHLQR 137
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL-- 205
+ PDIVI TP + LS +++ S SD L+ LV+DEADL+LSYG+++D++ +
Sbjct: 138 VLTSEKPDIVIGTPS---RALSALQVKALSLSD-LESLVIDEADLVLSYGHDEDIRTVIN 193
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
+P+ Q LMSAT + DV+ LK L+L NP IL L E DE + Q+ + C+
Sbjct: 194 GGYLPKVYQSFLMSATMTKDVELLKGLVLRNPAILRLEE-----DEGDAARLSQYVVKCN 248
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
E DK L +LKL+LV+ K +IF N +D +R+KLFLE+F IKS +LN+ELP NSR+HI
Sbjct: 249 EVDKFLLTYVILKLKLVKGKTIIFVNDVDRCYRVKLFLEQFSIKSCVLNSELPLNSRVHI 308
Query: 326 LEEFNAGLFDYLIATDD----TQTKEKDQSDEGGHVD----------------------- 358
++EFN G++DY+IATD+ + D++DE VD
Sbjct: 309 VQEFNKGVYDYIIATDEGSGSIEPDSDDETDEEVQVDGEQLTSTQRDVEPIEPGDPGPSS 368
Query: 359 --SRKSKKHP----------------KAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGY 400
+ K K+ P + + D E+GVVRG+DF +V V+NF++P +A Y
Sbjct: 369 TKTMKRKRSPSPRPTPEGTTTKKNKSRTQNDKEYGVVRGVDFIDVACVLNFDLPTSARAY 428
Query: 401 VHRIGRTGRAYNTGASVSLVSP------------------DEMKI--FEEIKSFVGDDEN 440
HR+GRT RA TG ++S V P DE++ E ++ G N
Sbjct: 429 THRVGRTARAGRTGMALSFVVPAAEWGKNKVVGCLPSARRDEVRFSRIERQQATRGSKIN 488
Query: 441 EDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEV 500
E VE+ RYR +D +SVT+ A+RE+R ++L++EILNSEKLKAHFE
Sbjct: 489 EYK--------FDMKQVEAFRYRMQDALRSVTRTAIREARVKELKSEILNSEKLKAHFEE 540
Query: 501 NPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSS----- 555
NP DL+ L+HDK L H++ VP YL+ A A A G K +S
Sbjct: 541 NPLDLEYLRHDKPLHPTRVQPHMKHVPKYLMPRMGTAASAGELTAGAGGGEKEASFVPFR 600
Query: 556 ------------RRQGP-RRKFRKSDPLKSF 573
GP + + +KSDPLK F
Sbjct: 601 KYTVRGRGRGRGSHTGPGKGRKKKSDPLKKF 631
>gi|145232376|ref|XP_001399636.1| ATP-dependent RNA helicase dbp9 [Aspergillus niger CBS 513.88]
gi|134034083|sp|A2QCW6.1|DBP9_ASPNC RecName: Full=ATP-dependent RNA helicase dbp9
gi|134056552|emb|CAK37606.1| unnamed protein product [Aspergillus niger]
Length = 616
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 239/620 (38%), Positives = 352/620 (56%), Gaps = 63/620 (10%)
Query: 4 SKEIPSKEVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEG 63
+ ++PS EV AE +E +E FE L LD RL AL K+ KPT +Q +IPL L G
Sbjct: 7 ANDVPSPEV--AETKETSDADEADFESLNLDPRLRQALIKEKFTKPTPVQAKAIPLALAG 64
Query: 64 KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKL-APAALVLVPTRELCQQVYSEVMAL 122
KD++ARAKTGSGKT AY+LP+L + + + L A L+LVPTREL +QV V
Sbjct: 65 KDILARAKTGSGKTAAYVLPILQTILQKKAADPSLKATTGLILVPTRELAEQVQKVVTTF 124
Query: 123 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSL 182
C V + V LT + + R L+ PDIVI+TP + L L D+L
Sbjct: 125 AAFCGKDV--RSVNLTQKVSEAVQRTMLSDYPDIVISTPARVIANLGNSSLSL----DNL 178
Query: 183 KILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL 242
LV+DEADL+LSYGY++D+ ALS IPRG Q LMSAT +S+VD LK L +P +L L
Sbjct: 179 THLVIDEADLVLSYGYDEDINALSKAIPRGVQTFLMSATLTSEVDTLKGLFCRSPVVLKL 238
Query: 243 PEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLF 302
+ E V QF + C+E +K L + KL+L++ K +IF ID +RLKLF
Sbjct: 239 ED-----KEEKGAGVSQFVVKCAEDEKFLLTYVIFKLQLIKGKVIIFVGDIDRCYRLKLF 293
Query: 303 LEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQT------KEKD------- 349
LE+FG+KS +LN+ELP NSR+H+++EFN G++D +IA DD + K K+
Sbjct: 294 LEQFGVKSCVLNSELPVNSRIHVVQEFNKGVYDIIIAADDQEVLGSKSKKAKNAGADEEE 353
Query: 350 --------QSDEGGHVDSRKSKKHPKAKL---DSEFGVVRGIDFKNVHTVINFEMPQNAA 398
DE D + ++ + KL + ++G+ RGIDF+NV V+NF++P A
Sbjct: 354 EAAGVMGSSDDEEAEDDKKSNRPDKRRKLTAKEKDYGISRGIDFQNVACVLNFDLPTTAK 413
Query: 399 GYVHRIGRTGRAYNTGASVSLVSPDEM------------KIFEEIKSFVGDDENEDSNII 446
Y HRIGRTGR TG ++S V P + K E + + + +++ + +
Sbjct: 414 SYTHRIGRTGRGGKTGMALSFVVPADQYGKHKPTSFPTAKHDEAVLAKIVKRQSKHGHEV 473
Query: 447 APFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLD 506
P+ + V++ RYR D +++T++AV+E+RA+++R E++ SEKLK HFE NP +L
Sbjct: 474 KPYH-FEMSQVDAFRYRMTDGLRAITRLAVQEARAREIRQELVKSEKLKRHFEDNPDELR 532
Query: 507 LLKHDKDLSKKPPASHLRDVPDYLLDAK-----TQEACKMVKLARAAMGN----KNSSRR 557
L+HD +L HL+ +P+YL+ +K + E V +++ ++ +R
Sbjct: 533 QLRHDGELRSARIQPHLKHIPEYLMPSKGRKGISSEDVGFVGFRKSSDNRIRKARDKNRA 592
Query: 558 QGPRRK---FRKSDPLKSFS 574
+G RK RK DPLK+F+
Sbjct: 593 KGKGRKPSGVRKVDPLKTFN 612
>gi|453085376|gb|EMF13419.1| P-loop containing nucleoside triphosphate hydrolase protein
[Mycosphaerella populorum SO2202]
Length = 634
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 232/629 (36%), Positives = 352/629 (55%), Gaps = 77/629 (12%)
Query: 16 EEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSG 75
+E +A A + +F L LD RL+ +++K+ PTL+Q +IPL L KDV+ARAKTGSG
Sbjct: 23 DESKASAPPKATFANLNLDARLLQSVHKQKFSAPTLVQSKTIPLALASKDVLARAKTGSG 82
Query: 76 KTFAYLLPLLHRLFNESSPKSKL-APAALVLVPTRELCQQVYSEVMALIELCKGQVQLKV 134
KT AYLLP +H + S K+ + AL+LVPT+EL QV + V + C +V K
Sbjct: 83 KTLAYLLPTVHAILQRKSGTKKVKSTTALILVPTKELATQVTNSVKEVTTFCAAEV--KC 140
Query: 135 VQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLL 194
+T S RA LA PDIV+ATP + +++ ++ + LK L++DEADL+L
Sbjct: 141 ENITRKEDPSVTRARLAELPDIVVATPARAIQWVNSETMKL----EGLKHLIIDEADLVL 196
Query: 195 SYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIP 254
SY EDDL+AL+ ++P G Q L+MSAT ++VD L L + PE+ D+ E
Sbjct: 197 SYDGEDDLRALANLLPEGVQKLMMSATLRTEVDTLTALFFAED---SKPEILDLSQEEAK 253
Query: 255 K--NVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAI 312
+ + Q+ + +E +K L I + KL+L++ K ++F ID +R+KLFLE+FGI+S +
Sbjct: 254 EKATLAQYTVRTAEDEKFLLIYAIFKLQLIKGKVIVFVADIDRGYRVKLFLEQFGIRSCV 313
Query: 313 LNAELPQNSRLHILEEFNAGLFDYLIATDDTQ---TKEKDQSDEGGHV------------ 357
LNAELP NSRLH++EEFN G++D +IA D+++ ++ +S E V
Sbjct: 314 LNAELPVNSRLHVVEEFNKGVYDIIIAADESEVVGNEDGKKSKESERVAEEDEDEDEVEP 373
Query: 358 ----------------DSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYV 401
++R KK +++ D E+GV RGIDF++V V+NF++P N Y
Sbjct: 374 DGAEAETEPVTTENSSNTRPVKKQRRSRKDREYGVSRGIDFRHVTCVLNFDLPTNNKSYT 433
Query: 402 HRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNA----- 456
HRIGRT RA +G ++S P + + + K + D ++A ++A+ A
Sbjct: 434 HRIGRTARAGQSGMALSFYVPKSL--YRKHKPTSIEQCEHDEEVLA--KIVAKQADQGSE 489
Query: 457 ----------VESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLD 506
++ RYR D +SVT+IAVRE+R +++RNE++ SEKLK HFE NP+DL
Sbjct: 490 VKEWGIDWTKLDGFRYRLVDALRSVTRIAVREARTKEIRNELVKSEKLKRHFEENPEDLK 549
Query: 507 LLKHDKDLSKKPPASHLRDVPDYLL----DAKTQEACKMVKLAR---AAMGNKNSSRRQG 559
L+HD + +HL+ VPDYLL A + V + R + N+ ++ +
Sbjct: 550 HLRHDTESHAVRAQAHLKHVPDYLLPQGGKAAVAKDVGYVGMKRDKANGIRNRRATNKAK 609
Query: 560 PRRKFRKS---DPLKSFSAEPTKRAGKGR 585
R + K DPLKS + + G+GR
Sbjct: 610 GRGRLAKGKGLDPLKSLNVK-----GRGR 633
>gi|85096857|ref|XP_960335.1| hypothetical protein NCU07070 [Neurospora crassa OR74A]
gi|74628745|sp|Q7S6F3.1|DBP9_NEUCR RecName: Full=ATP-dependent RNA helicase dbp-9
gi|28921823|gb|EAA31099.1| hypothetical protein NCU07070 [Neurospora crassa OR74A]
Length = 676
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 221/554 (39%), Positives = 331/554 (59%), Gaps = 46/554 (8%)
Query: 11 EVKQAEEEEAEAEEEK-----SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKD 65
E KQ +E++ + + EK +F +LGLD RLV A+ K+ +KPTL+Q+ +IPL L G+D
Sbjct: 75 EQKQQDEKDEKKQSEKDDADLTFSDLGLDPRLVQAVAKQSFEKPTLVQRKAIPLALAGQD 134
Query: 66 VVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIEL 125
V+ +AKTGSGKT AY+LP+L + + +AL+LVPTREL QV+ + A
Sbjct: 135 VLCKAKTGSGKTAAYVLPVLSGILKRKATDPTPFTSALILVPTRELADQVHKAIDAFSAF 194
Query: 126 CKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKIL 185
C +Q +LT ++ + LR+ LA PD++++TP + +G L L+ L
Sbjct: 195 CTKDIQ--SAKLTDNVSDAVLRSLLANAPDVIVSTPARAWHNIESGALSVA----KLQYL 248
Query: 186 VLDEADLLLSYGYEDDLKALSAVIPR-GCQCLLMSATSSSD-VDKLKKLILHNPYILTLP 243
VLDEADL+LSYGY++D++ ++ +P+ G Q +MSAT SD +D LK NP +L L
Sbjct: 249 VLDEADLVLSYGYDEDMENIARSLPKGGVQTTMMSATLVSDELDTLKGFFCRNPTMLDLK 308
Query: 244 EVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFL 303
E +DE + QF++ C E DK L + KL+L++ L+F ID A+RLKLF
Sbjct: 309 EEFSNEDE----KLTQFYVKCGEDDKWLISYLIFKLQLIKGPCLVFVADIDRAYRLKLFF 364
Query: 304 EKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD-----------TQTKEKDQSD 352
E+F I+S +LN+ELP N+R+ I+EEFN G++D +IA+D+ + KE+
Sbjct: 365 EQFSIRSCVLNSELPINTRIKIIEEFNRGIYDIIIASDERSEVFLEDEKTEEKKEEQGEK 424
Query: 353 EGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYN 412
+ G K K + D E+GV RGIDFKNV VINF+MP +++ Y+HRIGRT RA
Sbjct: 425 KEGDEKKNGKGKKKKGRRDQEYGVSRGIDFKNVAAVINFDMPTSSSSYIHRIGRTARAGR 484
Query: 413 TGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA--------------PFPLLAQNAVE 458
G ++S+V P ++ F + K +D ++A P+ ++ +E
Sbjct: 485 AGIALSMVVPHDL--FGKHKPTSIKQCEKDEKVLAKVMRQQAKLNRKLEPYN-FNKDQME 541
Query: 459 SLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDL-SKK 517
+ RYR D ++VTK+A+RE+R ++LR E+L SE LK +FE NP +L L+HD +L +K
Sbjct: 542 AFRYRMNDALRAVTKVAIREARTRELRQELLRSETLKRYFEENPHELSHLRHDGELGTKM 601
Query: 518 PPASHLRDVPDYLL 531
+HL+ VPDYLL
Sbjct: 602 RQQAHLKHVPDYLL 615
>gi|26344992|dbj|BAC36145.1| unnamed protein product [Mus musculus]
Length = 546
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 223/516 (43%), Positives = 315/516 (61%), Gaps = 21/516 (4%)
Query: 21 EAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAY 80
E +E FE +GLD RL+ A+ G +PTLIQ+ +IPL LEGKD++ARA+TGSGKT AY
Sbjct: 2 EDQEALGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAY 61
Query: 81 LLPLLHRLFNE--SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLT 138
+P+L L ++ + P + A LVLVPT+EL +Q + + L C V +V ++
Sbjct: 62 AIPMLQSLLHKKATGPVMEQAVRGLVLVPTKELARQAQAMIQQLAAYCARDV--RVANVS 119
Query: 139 SSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGY 198
++ ++ RA L PD+V+ TP + L L+ DSL++LV+DEADLL S+G+
Sbjct: 120 AAEDSASQRAVLMEKPDVVVGTPSRVLSHLQQNTLK---LRDSLELLVVDEADLLFSFGF 176
Query: 199 EDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ 258
ED+LK+L +PR Q LMSAT + DV LK+L+LHNP L L E P +Q
Sbjct: 177 EDELKSLLCHLPRIYQAFLMSATFNEDVQTLKELVLHNPVTLKLQE----SQLPGPDQLQ 232
Query: 259 QFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAEL 317
QF + C +E DK L + LLKL L++ KAL+F NT++ +RL+LFLE+F I S +LN EL
Sbjct: 233 QFQVVCETEEDKFLLLYALLKLSLIRGKALLFVNTLERGYRLRLFLEQFSIPSCVLNGEL 292
Query: 318 PQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVV 377
P SR HI+ +FN GL+D +IATD + + G R SK + + D E GV
Sbjct: 293 PLRSRCHIISQFNQGLYDCVIATDAEILGPQVKGKRRG----RGSKGNKAS--DPESGVA 346
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RGIDF +V V+NF++P A YVHR GRT RA N G ++ V P E +I+ +
Sbjct: 347 RGIDFHHVSAVLNFDLPPTAEAYVHRAGRTARANNPGIVLTFVLPAEQPFLGKIEDLLSG 406
Query: 438 DENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAH 497
+ ++ I+ P+ + +ES RYR D +SVTK A+RE+R ++++ E+L+S KLK +
Sbjct: 407 E--GEAPILLPYQFQMEE-IESFRYRCRDAMRSVTKQAIREARLKEIKEELLHSGKLKTY 463
Query: 498 FEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDA 533
FE NP+DL LL+HD L HL VPDYL+ A
Sbjct: 464 FEDNPRDLQLLRHDLPLHPAVVKPHLGHVPDYLVPA 499
>gi|365990357|ref|XP_003672008.1| hypothetical protein NDAI_0I01960 [Naumovozyma dairenensis CBS 421]
gi|343770782|emb|CCD26765.1| hypothetical protein NDAI_0I01960 [Naumovozyma dairenensis CBS 421]
Length = 608
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 230/612 (37%), Positives = 341/612 (55%), Gaps = 69/612 (11%)
Query: 19 EAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGK-DVVARAKTGSGKT 77
EA ++ +FE LD RL+ A+ G PTLIQ +IPL L+ K D++A+A TGSGKT
Sbjct: 8 EAYIDDSTTFESFQLDSRLLQAIKSFGFHHPTLIQSTAIPLALQQKRDIIAKAATGSGKT 67
Query: 78 FAYLLPLLHRLFNESSPK------SKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQ 131
+YL+P++ + + + + + ++LVPTREL QV + + +I C +
Sbjct: 68 LSYLVPVIETILDYKKTRVGNDIIEENSTLGIILVPTRELAHQVATVLEQMILFCSNDI- 126
Query: 132 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 191
+ + ++S + S L + L P+I+I+TPG + L T + S + D LK LV+DE D
Sbjct: 127 -RYLNISSDISNSVLSSLLTNRPEIIISTPGKLMNVLETKI-TSITLED-LKFLVIDEVD 183
Query: 192 LLLSYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVK 249
L+L++GY++DL +S +P + Q LMSAT + D+ +LK+ +P IL + K
Sbjct: 184 LVLTFGYQEDLNKISEYLPLKKNLQTFLMSATLNDDIQQLKQKFCRSPAILKFNDDEINK 243
Query: 250 DEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIK 309
D+ + Q+++ SE DK L + KL L++ K L+F N ID +RLKL LE+FGIK
Sbjct: 244 DQT---KLIQYYVKVSEFDKFLMCYVIFKLGLIKGKTLLFVNNIDRGYRLKLVLEQFGIK 300
Query: 310 SAILNAELPQNSRLHILEEFNAGLFDYLIATDDT-------------------QTKEKDQ 350
S ILN+ELP NSR HI+++FN +++ LIATDDT +T KD+
Sbjct: 301 SCILNSELPANSRQHIVDQFNKNIYNLLIATDDTEYIKEEEDEDEDEGDSKGDETNAKDK 360
Query: 351 SDEG--GHVDS-------RKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYV 401
+ G G DS K+ K + D E+GV RG+DFKNV V+NF++P A Y+
Sbjct: 361 VEVGVEGKDDSTKESETQNKNNNKQKTRKDKEYGVSRGVDFKNVACVLNFDLPTTAKSYI 420
Query: 402 HRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA-------------- 447
HRIGRT RA +G ++S V P +K + + K + D I++
Sbjct: 421 HRIGRTARAGKSGTAISFVVP--LKEYGKHKPSMCQTTKRDEKILSRIIKQQSKLGLEMQ 478
Query: 448 PFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDL 507
P+ + VE RYR ED ++VT++AVRE+R ++L+ E+L SEKLK HFE NPK+L
Sbjct: 479 PYSFDTKQ-VEGFRYRLEDGFRAVTQVAVREARIKELKQELLTSEKLKRHFEENPKELQS 537
Query: 508 LKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQ------GPR 561
L+HDK+L HL+ VP+YLL ++ K V N SRR +
Sbjct: 538 LRHDKELHSARVQQHLKRVPEYLLPEAARKGGKKVNF--VPFHNPKKSRRNGKKGGKVGK 595
Query: 562 RKFRKSDPLKSF 573
R+ KSDPLK+F
Sbjct: 596 RRTGKSDPLKNF 607
>gi|365759353|gb|EHN01145.1| Dbp9p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|401837470|gb|EJT41395.1| DBP9-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 593
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 231/590 (39%), Positives = 329/590 (55%), Gaps = 58/590 (9%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGK-DVVARAKTGSGKTFAYLLPLL 85
+FE LD RL+ A+ G Q PTLIQ SIPL L+ K D++A+A TGSGKT AYL+P++
Sbjct: 18 TFESFHLDSRLLQAIKNIGFQNPTLIQSHSIPLALQQKRDIIAKAATGSGKTLAYLIPVI 77
Query: 86 HRLFNESSP---KSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMP 142
+ + + ++LVPTREL QQVY+ + L+ C V + + ++S +
Sbjct: 78 QTILEYKKTVDNEEENGTLGIILVPTRELAQQVYNVLEKLVLYCSKDV--RTLNISSDIS 135
Query: 143 ASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 202
S L L P+I++ TPG + L T + S S ++ +K LV+DE DL+L++GY+DDL
Sbjct: 136 DSVLNTLLMDQPEIIVGTPGKLLDLLQTKI-NSISLNE-IKFLVIDEVDLVLTFGYQDDL 193
Query: 203 KALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN---V 257
+ +P + Q LMSAT + D+ LK+ +P IL DE I KN +
Sbjct: 194 HKIGEYLPLKKNLQTFLMSATLNDDIQVLKQKFCRSPAILKF------NDEEINKNQNKL 247
Query: 258 QQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAEL 317
Q+++ SE DK L + KL L++ K LIF N ID +RLKL +E+FGIKS ILN+EL
Sbjct: 248 LQYYVKVSEFDKFLLCYVIFKLGLIKGKTLIFVNNIDRGYRLKLVMEQFGIKSCILNSEL 307
Query: 318 PQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSD------------------EGGHVDS 359
P NSR HI+++FN ++ LIATDDT+ +++ D E G S
Sbjct: 308 PVNSRQHIVDQFNKNVYQLLIATDDTEYIKEEDGDIEEHNGGNEEERNLEAESENGEKPS 367
Query: 360 RKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSL 419
++ K + K D E+GV RG+DF NV V+NF++P A YVHR+GRT R TG ++S
Sbjct: 368 KEKK--VQVKKDKEYGVSRGVDFINVACVLNFDLPTTAKSYVHRVGRTARGGKTGTAISF 425
Query: 420 VSPDEMKIFEEIKSFVGDDENEDSNIIA--------------PFPLLAQNAVESLRYRAE 465
V P +K F + K + D I++ P+ Q VE RYR E
Sbjct: 426 VVP--LKEFGKHKQSMLQTAKRDEKILSRIIKQQSKLGLELQPYK-FDQKQVEGFRYRME 482
Query: 466 DVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRD 525
D ++VT++A+RE+R ++L+ E+L SEKLK HFE NPK+L L+HDK+L HL+
Sbjct: 483 DGFRAVTQVAIREARVKELKQELLASEKLKRHFEENPKELQSLRHDKELHPARVQQHLKR 542
Query: 526 VPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQG--PRRKFRKSDPLKSF 573
VPDYLL + VK K R+G + K K DPLK+F
Sbjct: 543 VPDYLLPESARGNGTKVKFIPFYNPKKRHPHRKGKVSKPKNGKVDPLKNF 592
>gi|443897458|dbj|GAC74798.1| RNA helicase [Pseudozyma antarctica T-34]
Length = 660
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 249/636 (39%), Positives = 356/636 (55%), Gaps = 94/636 (14%)
Query: 12 VKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAK 71
++ + +E+AE F + LD RL+ +L G PT IQQ +IPL L GKD++ARA+
Sbjct: 44 IELSSQEDAERLGFNVFSHI-LDPRLLRSLADLGFGIPTPIQQKAIPLALAGKDILARAR 102
Query: 72 TGSGKTFAYLLPLLHRLFN------ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIEL 125
TGSGKT AY LPLL ++ + +S PK +L ALVLVPTREL +QV+ + +IE
Sbjct: 103 TGSGKTLAYGLPLLQKVLDAKAAVAKSDPKHQLT-RALVLVPTRELAEQVFRHLSVVIEY 161
Query: 126 CKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKIL 185
+ V ++V + R L+ PD+VIATP L G L KS L+ L
Sbjct: 162 LRDDV--RIVNVARDASEKVQRLLLSEKPDVVIATPSKALSYLQNGSLDLKS---GLETL 216
Query: 186 VLDEADLLLSYGYEDDLKAL--SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLP 243
+DEADL+LSYG++ D+K+L + +P Q LMSAT +SDV KLK L+L NP +L L
Sbjct: 217 AIDEADLILSYGHDSDVKSLLGGSFLPSHFQSFLMSATMTSDVSKLKGLLLRNPVVLKLN 276
Query: 244 EVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFL 303
E D+ N+ QF+ +E DK L + +LKL+L++ KA++F N ++ +RLKLFL
Sbjct: 277 ET----DDAAGSNLVQFYTRTTEEDKFLLVYVILKLKLIRGKAILFVNDLERGYRLKLFL 332
Query: 304 EKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD--------TQTKEKDQSDEGG 355
EKFG+++ +LNAELP NSR I+EEFN G FDY++ATD+ + + + +DEG
Sbjct: 333 EKFGLRACVLNAELPINSRYSIVEEFNKGKFDYIVATDEPTGINQEAEEGSDDESADEGE 392
Query: 356 HV------DSRKSKKH---------PKAKLD--------SEFGVVRGIDFKNVHTVINFE 392
V DS K +K KAK + +EFGV RG+DF NV VINF+
Sbjct: 393 DVAENAEDDSTKKRKSGAAEGKAAGKKAKREGKKGSAGAAEFGVSRGVDFVNVSCVINFD 452
Query: 393 MPQNAAGYVHRIGRTGRAYNTGASVSLVSPD----------------EMKIFEEIKSFVG 436
+P + GY+HR+GRT R +G ++S V P + +F +I+
Sbjct: 453 LPTSVDGYIHRVGRTARGGASGTALSFVVPSSEFGRSKYLSCGSTRRDESVFRQIQR--- 509
Query: 437 DDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKA 496
N + + A ++VE RYR D KS+T+ +RE+R ++L+ E+L S KL+A
Sbjct: 510 --RNAAGGELQEWKYDA-SSVEGFRYRVGDTLKSITRTLIREARIKELKAELLTSAKLQA 566
Query: 497 HFEVNPKDLDLLKHDKD-LSKKPPASHLRDVPDYLLDAKTQEACKMVKLA----RAAMG- 550
HFE +P DL L+HD+ LS + HL+ VP YL A K++ + RA G
Sbjct: 567 HFEDHPDDLAYLQHDRALLSTRSGQQHLKHVPAYL-------APKIINNSMAQPRAYTGY 619
Query: 551 ---NKNSSRRQGPRRKFRKSDPLKSFSAEPTKRAGK 583
NK S +G RK RK+ +SF+A K+ GK
Sbjct: 620 VPKNKPS---EGKNRKNRKA---RSFTAASGKKPGK 649
>gi|254582140|ref|XP_002497055.1| ZYRO0D14388p [Zygosaccharomyces rouxii]
gi|238939947|emb|CAR28122.1| ZYRO0D14388p [Zygosaccharomyces rouxii]
Length = 583
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 235/596 (39%), Positives = 346/596 (58%), Gaps = 43/596 (7%)
Query: 7 IPSKEVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGK-D 65
+ S +V+QA E A ++ SFE L LD RL+ A+ + G PTLIQ +IPL L+ K D
Sbjct: 1 MSSNKVEQASE--AYIDDSTSFESLQLDPRLLQAVKRNGFLHPTLIQSHAIPLALQQKRD 58
Query: 66 VVARAKTGSGKTFAYLLPLLHRLFNESSP----KSKLAPAALVLVPTRELCQQVYSEVMA 121
++A+A TGSGKT AYL+P++ + N + +VLVPT+EL QVYS +
Sbjct: 59 IIAKAATGSGKTLAYLIPVIQTILNYKESLQDENDQNQTLGIVLVPTKELANQVYSVLEK 118
Query: 122 LIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-D 180
+ C + + + ++S + S L L P+I++ATPG + L T +++ S D
Sbjct: 119 MTLYCSKDI--RSLNVSSDISNSVLNTLLLEKPEIIVATPGKLVTLLETN---TEAISLD 173
Query: 181 SLKILVLDEADLLLSYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPY 238
LK LV+DE DL+L++GYE+DL ++ +P + Q LMSAT + D+ LK+ P
Sbjct: 174 ELKFLVIDEVDLVLTFGYEEDLTKIAQYLPLKKNLQTFLMSATLNDDIQNLKQQFCRFPA 233
Query: 239 ILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFR 298
IL + +D+ K + Q+++ +E DK L + KL L++ K L+F N ID ++
Sbjct: 234 ILKFNDDEISRDQ---KKLAQYYVKTTEFDKFLLCYVIFKLALIRGKTLVFVNNIDRGYK 290
Query: 299 LKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDT-------QTKEKDQS 351
LKL LE+FGIKS+ILN+ELP NSR HI+++FN LF LIATDDT + ++
Sbjct: 291 LKLVLEQFGIKSSILNSELPINSRQHIVDQFNKNLFHILIATDDTDYIKEEEEELAHEEG 350
Query: 352 DEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAY 411
+ G+ +S+ KH K + E+GV RG+DFKNV V+NF++P A YVHR+GRT RA
Sbjct: 351 RDDGNTESQNKSKHGSKK-NREYGVSRGVDFKNVSCVLNFDLPTTAKSYVHRVGRTARAG 409
Query: 412 NTGASVSLVSP--DEMKIFEEIKSFVGDDENEDSNIIA----------PFPLLAQNAVES 459
+G ++S V P + K + + DE S II P+ + VE
Sbjct: 410 KSGTAISFVVPRKEYGKHKPSMCTTAIKDEKILSRIIKQQSKLGLEMLPYS-FDKKQVEG 468
Query: 460 LRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPP 519
RYR ED ++VT++AVRE+R ++L+ E+L S+KLK HFE NP++L L+HDK+L
Sbjct: 469 FRYRMEDGFRAVTQVAVREARIKELKQELLMSDKLKRHFEENPQELQSLRHDKELHPARV 528
Query: 520 ASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRR--QGPRRKFRKSDPLKSF 573
HL+ VPDYLL +E K ++ +KN +R +G +K K DPLKSF
Sbjct: 529 QQHLKRVPDYLLPEPLREG-KSPQIGFVPF-HKNGKKRAKKGKVQKRGKVDPLKSF 582
>gi|307171935|gb|EFN63564.1| Probable ATP-dependent RNA helicase DDX56 [Camponotus floridanus]
Length = 546
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 229/570 (40%), Positives = 336/570 (58%), Gaps = 30/570 (5%)
Query: 16 EEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSG 75
E +E + + K+F EL LD RL+ A+ K G +PTLIQ+ +IPLILEGKDV+ RA+TGSG
Sbjct: 2 ELDEEDEIKSKNFHELELDDRLLKAIAKLGWNEPTLIQEKAIPLILEGKDVLIRARTGSG 61
Query: 76 KTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVV 135
KT A+ LPL+ ++ + K L++ P++ELC+Q+Y +M L C +V +V+
Sbjct: 62 KTAAFALPLIQKILVNKRMQKKQQIKGLIVAPSKELCKQIYDVIMCLTTKCYREV--RVI 119
Query: 136 QLTSSMPASDLRAA---LAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADL 192
++ P +DL A L PDI++ TP + + L G + K SL+ L++DEADL
Sbjct: 120 DIS---PQTDLNAQKPLLNEMPDIIVVTPSRLLQHLKAGNMMLKH---SLETLIIDEADL 173
Query: 193 LLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEV 252
L S+GYE+++KA+ +P Q +L SAT S DV LK+L+LHNP IL L E
Sbjct: 174 LFSFGYENEIKAVLTYLPTAYQAILASATLSEDVQALKRLVLHNPAILKLEEPPLAP--- 230
Query: 253 IPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAI 312
P + + ++ E DK + LLKL L++ K +IF NT+D ++LKLFLE+FGI + I
Sbjct: 231 -PTQLAHYTLAAEETDKAAILYALLKLHLIRGKTIIFVNTVDRCYKLKLFLEQFGIPTCI 289
Query: 313 LNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDS 372
LN+ELP SR + +FN+G +D +IA+D+ +E HV K K K D
Sbjct: 290 LNSELPATSRCRAVTQFNSGTYDIIIASDEKALEEP-------HVIKTKKD---KRKKDK 339
Query: 373 EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432
E GV RGIDF+ V VINF+ P + Y+HR GRT R N G ++S V+ E + E+++
Sbjct: 340 ESGVARGIDFQFVSNVINFDFPLDINSYIHRAGRTARGKNQGTALSFVAIRERPLMEKVE 399
Query: 433 SFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSE 492
+ N + N+ + + VE RYRA+D K+VT+IAVRE+R +++R E++N E
Sbjct: 400 EHLKGTYNCE-NLFKTYQFKLEE-VEGFRYRAKDGWKAVTRIAVREARLKEIRQEVINCE 457
Query: 493 KLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNK 552
KLK++FE NP+DL L+ DK L HL+DVP+Y++ + + + K R N
Sbjct: 458 KLKSYFEDNPRDLQSLRQDKALHTVKLQPHLKDVPEYIIPSTLKGIMGIGKRKRKFDRNA 517
Query: 553 NSSRRQG--PRRKFRKSDPLKSFSAEPTKR 580
SS R + R S+PL S PTK+
Sbjct: 518 ASSGATAVKSRHQARASNPLISLEI-PTKK 546
>gi|350405187|ref|XP_003487352.1| PREDICTED: probable ATP-dependent RNA helicase DDX56-like [Bombus
impatiens]
Length = 550
Score = 377 bits (967), Expect = e-101, Method: Compositional matrix adjust.
Identities = 215/522 (41%), Positives = 320/522 (61%), Gaps = 28/522 (5%)
Query: 15 AEEEEAEAEEE---KSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAK 71
+ E E + E E K+F EL LD R++ A++K G +PTLIQ+ +IPL++EGKD++ RA+
Sbjct: 3 SNEMEVDDENETKPKNFHELELDDRILKAISKLGWAEPTLIQEKAIPLMMEGKDILIRAR 62
Query: 72 TGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQ 131
TGSGKT A+ +PL+ ++ + + K L++ P++ELC+Q++ ++ L C +V
Sbjct: 63 TGSGKTAAFTIPLIQKILSNKRMQKKQEIKGLIVAPSKELCKQIHDVIICLTVKCSREV- 121
Query: 132 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 191
KV+ ++ + S + LA PDIV+ TP + + L ++ K SL+ L++DEAD
Sbjct: 122 -KVIDVSPQLDLSAQKPLLAEKPDIVVGTPSRLLQHLKANNMKLKQ---SLETLIIDEAD 177
Query: 192 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 251
L+ S+GYED++K+L +P Q L SAT S DV LKKL+L NP IL L E
Sbjct: 178 LVFSFGYEDEIKSLLNYLPIVYQAALASATLSEDVVTLKKLVLRNPAILKLEE-----PP 232
Query: 252 VIP-KNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 310
+ P + + ++ E DK + LLKL LV+ K +IF NT+D ++LKLFLE+FGI +
Sbjct: 233 LAPLSQLSHYSLAAEENDKAAILYALLKLHLVRGKTIIFVNTVDRCYKLKLFLEQFGIPT 292
Query: 311 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL 370
+LN+ELP SR + +FN+G +D +IA+D ++S E H+ K + K
Sbjct: 293 CVLNSELPAVSRCRAVTQFNSGTYDIIIASD-------EKSLEEPHIIKVKRGRRKK--- 342
Query: 371 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE 430
D E GV RGIDF+ V VINF+ PQ+ Y+HR GRT R N G ++S VS E + E+
Sbjct: 343 DKESGVARGIDFQFVSNVINFDFPQDVNSYIHRAGRTARGKNQGTALSFVSIRERPLLEQ 402
Query: 431 IKSFVGDDENEDSNI-IAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEIL 489
++S + N D+ F L VE RYRA+D K+VT+IAVRE+R ++++ E+L
Sbjct: 403 VESELKHCYNRDTLFKTYQFKL---EEVEGFRYRAKDAWKAVTRIAVREARLKEIKQEVL 459
Query: 490 NSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 531
N +KLK++FE NPKDL L+ DK L SHL+DVPDY++
Sbjct: 460 NCQKLKSYFEDNPKDLQSLRQDKALHTVKLQSHLKDVPDYIV 501
>gi|323303814|gb|EGA57597.1| Dbp9p [Saccharomyces cerevisiae FostersB]
Length = 594
Score = 377 bits (967), Expect = e-101, Method: Compositional matrix adjust.
Identities = 234/598 (39%), Positives = 337/598 (56%), Gaps = 55/598 (9%)
Query: 18 EEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGK-DVVARAKTGSGK 76
E A ++ +FE LD RL+ A+ G Q PTLIQ +IPL L+ K D++A+A TGSGK
Sbjct: 9 EGAYIDDSTTFEAFHLDSRLLQAIKNIGFQYPTLIQSHAIPLALQQKRDIIAKAATGSGK 68
Query: 77 TFAYLLPLLHRLFNESSP---KSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLK 133
T AYL+P++ + + ++LVPTREL QQVY+ + L+ C + +
Sbjct: 69 TLAYLIPVIETILEYKKTIDNGEENGTLGIILVPTRELAQQVYNVLEKLVLYCSKDI--R 126
Query: 134 VVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLL 193
+ ++S M S L L P+I++ TPG + L T + S S ++ LK LV+DE DL+
Sbjct: 127 TLNISSDMSDSVLSTLLMDQPEIIVGTPGKLLDLLQTKI-NSISLNE-LKFLVVDEVDLV 184
Query: 194 LSYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 251
L++GY+DDL + +P + Q LMSAT + D+ LK+ +P IL DE
Sbjct: 185 LTFGYQDDLNKIGEYLPLKKNLQTFLMSATLNDDIQALKQKFCRSPAILKF------NDE 238
Query: 252 VIPKN---VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGI 308
I KN + Q+++ SE DK L + KL L++ K LIF N ID +RLKL +E+FGI
Sbjct: 239 EINKNQNKLLQYYVKVSEFDKFLLCYVIFKLNLIKGKTLIFVNNIDRGYRLKLVMEQFGI 298
Query: 309 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ-TKEKDQSDEGGHVDSRKSKKHPK 367
KS ILN+ELP NSR HI+++FN ++ LIATDDT+ KE+D E GH + +K +
Sbjct: 299 KSCILNSELPVNSRQHIVDQFNKNVYQLLIATDDTEYIKEEDDEIEEGHNTENQEEKSLE 358
Query: 368 AKLDS----------------EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAY 411
+ ++ E+GV RG+DFKNV V+NF++P A YVHR+GRT R
Sbjct: 359 GEPENDKKPSKKKKVQVKKDKEYGVSRGVDFKNVACVLNFDLPTTAKSYVHRVGRTARGG 418
Query: 412 NTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA--------------PFPLLAQNAV 457
TG ++S V P +K F + K + +D I++ P+ Q V
Sbjct: 419 KTGTAISFVVP--LKEFGKHKPSMLQTAKKDERILSRIIKQQSKLGLELQPYK-FDQKQV 475
Query: 458 ESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKK 517
E+ RYR ED ++VT++A+RE+R ++L+ E+L SEKLK HFE NPK+L L+HDK+L
Sbjct: 476 EAFRYRMEDGFRAVTQVAIREARVKELKQELLASEKLKRHFEENPKELQSLRHDKELHPA 535
Query: 518 PPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQG--PRRKFRKSDPLKSF 573
HL+ VPDYLL + VK K S ++G + K K DPLK+F
Sbjct: 536 RVQQHLKRVPDYLLPESARGKGTKVKFVPFHNAKKRHSHKKGRVSKPKNGKVDPLKNF 593
>gi|6323306|ref|NP_013378.1| Dbp9p [Saccharomyces cerevisiae S288c]
gi|2500536|sp|Q06218.1|DBP9_YEAST RecName: Full=ATP-dependent RNA helicase DBP9; AltName: Full=DEAD
box protein 9
gi|160380635|sp|A7A1G0.1|DBP9_YEAS7 RecName: Full=ATP-dependent RNA helicase DBP9; AltName: Full=DEAD
box protein 9
gi|577189|gb|AAB67366.1| Ylr276cp [Saccharomyces cerevisiae]
gi|151940983|gb|EDN59364.1| DEAD box protein [Saccharomyces cerevisiae YJM789]
gi|190405335|gb|EDV08602.1| hypothetical protein SCRG_04227 [Saccharomyces cerevisiae RM11-1a]
gi|207342874|gb|EDZ70505.1| YLR276Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256269829|gb|EEU05089.1| Dbp9p [Saccharomyces cerevisiae JAY291]
gi|259148259|emb|CAY81506.1| Dbp9p [Saccharomyces cerevisiae EC1118]
gi|285813693|tpg|DAA09589.1| TPA: Dbp9p [Saccharomyces cerevisiae S288c]
gi|323336336|gb|EGA77604.1| Dbp9p [Saccharomyces cerevisiae Vin13]
gi|392297784|gb|EIW08883.1| Dbp9p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 594
Score = 377 bits (967), Expect = e-101, Method: Compositional matrix adjust.
Identities = 234/598 (39%), Positives = 337/598 (56%), Gaps = 55/598 (9%)
Query: 18 EEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGK-DVVARAKTGSGK 76
E A ++ +FE LD RL+ A+ G Q PTLIQ +IPL L+ K D++A+A TGSGK
Sbjct: 9 EGAYIDDSTTFEAFHLDSRLLQAIKNIGFQYPTLIQSHAIPLALQQKRDIIAKAATGSGK 68
Query: 77 TFAYLLPLLHRLFNESSP---KSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLK 133
T AYL+P++ + + ++LVPTREL QQVY+ + L+ C + +
Sbjct: 69 TLAYLIPVIETILEYKKTIDNGEENGTLGIILVPTRELAQQVYNVLEKLVLYCSKDI--R 126
Query: 134 VVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLL 193
+ ++S M S L L P+I++ TPG + L T + S S ++ LK LV+DE DL+
Sbjct: 127 TLNISSDMSDSVLSTLLMDQPEIIVGTPGKLLDLLQTKI-NSISLNE-LKFLVVDEVDLV 184
Query: 194 LSYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 251
L++GY+DDL + +P + Q LMSAT + D+ LK+ +P IL DE
Sbjct: 185 LTFGYQDDLNKIGEYLPLKKNLQTFLMSATLNDDIQALKQKFCRSPAILKF------NDE 238
Query: 252 VIPKN---VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGI 308
I KN + Q+++ SE DK L + KL L++ K LIF N ID +RLKL +E+FGI
Sbjct: 239 EINKNQNKLLQYYVKVSEFDKFLLCYVIFKLNLIKGKTLIFVNNIDRGYRLKLVMEQFGI 298
Query: 309 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ-TKEKDQSDEGGHVDSRKSKKHPK 367
KS ILN+ELP NSR HI+++FN ++ LIATDDT+ KE+D E GH + +K +
Sbjct: 299 KSCILNSELPVNSRQHIVDQFNKNVYQLLIATDDTEYIKEEDDEIEEGHNTENQEEKSLE 358
Query: 368 AKLDS----------------EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAY 411
+ ++ E+GV RG+DFKNV V+NF++P A YVHR+GRT R
Sbjct: 359 GEPENDKKPSKKKKVQVKKDKEYGVSRGVDFKNVACVLNFDLPTTAKSYVHRVGRTARGG 418
Query: 412 NTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA--------------PFPLLAQNAV 457
TG ++S V P +K F + K + +D I++ P+ Q V
Sbjct: 419 KTGTAISFVVP--LKEFGKHKPSMLQTAKKDERILSRIIKQQSKLGLELQPYK-FDQKQV 475
Query: 458 ESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKK 517
E+ RYR ED ++VT++A+RE+R ++L+ E+L SEKLK HFE NPK+L L+HDK+L
Sbjct: 476 EAFRYRMEDGFRAVTQVAIREARVKELKQELLASEKLKRHFEENPKELQSLRHDKELHPA 535
Query: 518 PPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQG--PRRKFRKSDPLKSF 573
HL+ VPDYLL + VK K S ++G + K K DPLK+F
Sbjct: 536 RVQQHLKRVPDYLLPESARGNGTKVKFVPFHNAKKRHSHKKGRVSKPKNGKVDPLKNF 593
>gi|349579984|dbj|GAA25145.1| K7_Dbp9p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 594
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 234/598 (39%), Positives = 333/598 (55%), Gaps = 55/598 (9%)
Query: 18 EEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGK-DVVARAKTGSGK 76
E A ++ +FE LD RL+ A+ G Q PTLIQ +IPL L+ K D++A+A TGSGK
Sbjct: 9 EGAYIDDSTTFEAFHLDSRLLQAIKNIGFQYPTLIQSHAIPLALQQKRDIIAKAATGSGK 68
Query: 77 TFAYLLPLLHRLFNESSP---KSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLK 133
T AYL+P++ + + ++LVPTREL QQVY+ + L+ C + +
Sbjct: 69 TLAYLIPVIETILEYKKTIDNGEENGTLGIILVPTRELAQQVYNVLEKLVLYCSKDI--R 126
Query: 134 VVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLL 193
+ ++S M S L L P+I++ TPG + L T + S S ++ LK LV+DE DL+
Sbjct: 127 TLNISSDMSDSVLSTLLMDQPEIIVGTPGKLLDLLQTKI-NSISLNE-LKFLVVDEVDLV 184
Query: 194 LSYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 251
L++GY+DDL + +P + Q LMSAT + D+ LK+ +P IL DE
Sbjct: 185 LTFGYQDDLNKIGEYLPLKKNLQTFLMSATLNDDIQALKQKFCRSPAILKF------NDE 238
Query: 252 VIPKN---VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGI 308
I KN + Q+++ SE DK L + KL L++ K LIF N ID +RLKL +E+FGI
Sbjct: 239 EINKNQNKLLQYYVKVSEFDKFLLCYVIFKLNLIKGKTLIFVNNIDRGYRLKLVMEQFGI 298
Query: 309 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ-----------------TKEKDQS 351
KS ILN+ELP NSR HI+++FN ++ LIATDDT+ +EK
Sbjct: 299 KSCILNSELPVNSRQHIVDQFNKNVYQLLIATDDTEYIKEEDDEIEEGHNTEDQEEKSLE 358
Query: 352 DEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAY 411
E + KK + K D E+GV RG+DFKNV V+NF++P A YVHR+GRT R
Sbjct: 359 GEPENDKKPSKKKKVQVKKDKEYGVSRGVDFKNVACVLNFDLPTTAKSYVHRVGRTARGG 418
Query: 412 NTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA--------------PFPLLAQNAV 457
TG ++S V P +K F + K + +D I++ P+ Q V
Sbjct: 419 KTGTAISFVVP--LKEFGKHKPSMLQTAKKDERILSRIIKQQSKLGLELQPYK-FDQKQV 475
Query: 458 ESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKK 517
E+ RYR ED ++VT++A+RE+R ++L+ E+L SEKLK HFE NPK+L L+HDK+L
Sbjct: 476 EAFRYRMEDGFRAVTQVAIREARVKELKQELLASEKLKRHFEENPKELQSLRHDKELHPA 535
Query: 518 PPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQG--PRRKFRKSDPLKSF 573
HL+ VPDYLL + VK K S ++G + K K DPLK+F
Sbjct: 536 RVQQHLKRVPDYLLPESARGNGTKVKFVPFHNAKKRHSHKKGRVSKPKNGKVDPLKNF 593
>gi|156552886|ref|XP_001600943.1| PREDICTED: probable ATP-dependent RNA helicase DDX56 [Nasonia
vitripennis]
Length = 555
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 208/506 (41%), Positives = 310/506 (61%), Gaps = 21/506 (4%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F ELGLD R++ A+ K G +PTLIQ+ +IPLIL+GKDV+ RA+TGSGKT A+ +PL+ +
Sbjct: 22 FHELGLDDRILKAIAKLGWLEPTLIQEKTIPLILDGKDVLVRARTGSGKTGAFAVPLVQK 81
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+ + + L+L P++ELC+Q++ + L C +V + + ++ + S +
Sbjct: 82 ILSNKETQQHQQTTGLILAPSKELCKQIHEVFVNLTTKCSREV--RCLDISPQVELSVQK 139
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
LA PDIVIATPG + L L K SL+ L++DEADL+ S+GYE+++K L A
Sbjct: 140 PLLAENPDIVIATPGRALQHLKAKNLNVKK---SLETLIIDEADLIFSFGYEEEIKTLLA 196
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 267
+P Q +L SAT S DV LKKL+LHNP IL L E P + + ++ E
Sbjct: 197 YLPTVYQAILASATLSEDVLSLKKLVLHNPAILKLEE----PPLAPPSQLAHYTLAAEEN 252
Query: 268 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 327
DK + LLKL L++ K +IF NT+D ++LKLFLE+FGI + +LN+ELP +SR +
Sbjct: 253 DKAAILYALLKLHLIRGKCIIFVNTVDRCYKLKLFLEQFGIPTCVLNSELPASSRCRAVT 312
Query: 328 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 387
+FN+G +D +IA+D+ +E HV +K K K D E GV RGIDF+ V
Sbjct: 313 QFNSGTYDIIIASDEKALEEP-------HVMKQKRGKRRK---DKESGVARGIDFQFVSN 362
Query: 388 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA 447
VINF+ P + Y+HR GRT R N G ++S V+ E + E+++ + D ++ N+
Sbjct: 363 VINFDFPLDINAYIHRAGRTARGKNQGTALSFVAIRERPMLEQVEEQLKKDYGQE-NLFK 421
Query: 448 PFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDL 507
+ N VE RYR+ D K+VT+IAVRE+R ++++ E+L +KLK++FE NP+DL
Sbjct: 422 TYQ-FKLNEVEGFRYRSRDAWKAVTRIAVREARLKEIKQEVLTCDKLKSYFEDNPRDLQS 480
Query: 508 LKHDKDLSKKPPASHLRDVPDYLLDA 533
L+ DK L +HL+DVP+Y++ A
Sbjct: 481 LRQDKALHTVRLQAHLKDVPEYIVPA 506
>gi|167517018|ref|XP_001742850.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163779474|gb|EDQ93088.1| predicted protein [Monosiga brevicollis MX1]
Length = 550
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 220/569 (38%), Positives = 335/569 (58%), Gaps = 42/569 (7%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
+ + GLD RL+ A+ + G KPTLIQQ +I ++ G+DV+ARA+TGSGKT AY +PLL+
Sbjct: 2 GWGDFGLDGRLLKAIGRLGWGKPTLIQQHAIRELMNGRDVLARARTGSGKTGAYTVPLLN 61
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
L S+ + +VLVPT+EL QV + L + C + + V L ++ L
Sbjct: 62 VLL--SATDEEQGVLGIVLVPTKELAFQVTENIKELAKFCLDVINVGV--LATNQSKKQL 117
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
++ A P I++ TP + + + ++K +LK+++LDEADLL SYGY +DL+ L
Sbjct: 118 KSLAASKPPILVGTPTRILQHIQN---EAKEVRQTLKLMILDEADLLFSYGYHEDLRRLC 174
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
A++PR Q +LMSAT DV+ LK+L L NP ++ L E D+ DE ++Q+ + C
Sbjct: 175 ALLPRLRQTILMSATMGDDVNALKELALRNPAVIKLEE-SDLPDE---DQLKQYKLYCEP 230
Query: 267 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
++LL++ LLK +LV+ K LIF N ID +R+KLFL+KFGI+ +LN+ELP NSR HI+
Sbjct: 231 SERLLHLCALLKFQLVRGKTLIFVNDIDSCYRVKLFLDKFGIRCCVLNSELPLNSRRHIV 290
Query: 327 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 386
+FN G++DY+IA+D+ T +S GG K + P A D E+GV RG+DFK +
Sbjct: 291 SQFNKGVYDYIIASDEGAT---GKSLWGGICKRGKGRAEPSA--DQEYGVARGVDFKGIK 345
Query: 387 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG---------- 436
VINF+ P AA YVHR+GRT R + G ++S + + +++ +
Sbjct: 346 NVINFDFPATAAAYVHRVGRTARGHRAGLALSFYLHADNERVAQVERLLEVAEAQEQEEA 405
Query: 437 -----DDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNS 491
+ E ++A + + ++ +RYR EDV V++ A++++R ++ NEILNS
Sbjct: 406 ETAKPNSEASAHRLVAYS--IDKRVLDKIRYRVEDVLSMVSRNAIKKARRAEIENEILNS 463
Query: 492 EKLKAHFEVNPKDLDLLKHDKDLSKKPP-ASHLRDVPDYLLDAKTQEACKMV---KLARA 547
EKL+AHFE NPKDL++L+HD++L ++ HL+ +P Y+ + A + K RA
Sbjct: 464 EKLQAHFEDNPKDLEVLRHDRNLQQRDQHMHHLKHLPAYIKQGVSVPAIQSGANDKNGRA 523
Query: 548 AMGNKNSSRR---QGPRRKFRKSDPLKSF 573
G N RR K RK DPLK+
Sbjct: 524 --GGANGKRRPNKNNKSSKRRKDDPLKAL 550
>gi|332239444|ref|XP_003268913.1| PREDICTED: probable ATP-dependent RNA helicase DDX56 isoform 1
[Nomascus leucogenys]
Length = 547
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 228/558 (40%), Positives = 323/558 (57%), Gaps = 31/558 (5%)
Query: 21 EAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAY 80
E E FE +GLD RL+ A+ G +PTLIQ+ +IPL LEGKD++ARA+TGSGKT AY
Sbjct: 2 EDSEALGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAY 61
Query: 81 LLPLLHRLFNE--SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLT 138
+P+L L + + P + A LVLVPT+EL +Q S + L C V +V ++
Sbjct: 62 AIPMLQLLLHRKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCARDV--RVANVS 119
Query: 139 SSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGY 198
++ ++ RA L PD+V+ TP + LS S DSL++LV+DEADLL S+G+
Sbjct: 120 AAEDSASQRAVLMEKPDVVVGTPS---RILSHLQQDSLKLRDSLELLVVDEADLLFSFGF 176
Query: 199 EDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ 258
E++LK+L +PR Q LMSAT + DV LK+L+LHNP L L E P +Q
Sbjct: 177 EEELKSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE----SQLPGPDQLQ 232
Query: 259 QFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAEL 317
QF + C +E DK L + LLKL L++ K+L+F NT+D ++RL+LFLE+F I S +LN EL
Sbjct: 233 QFQVVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLDRSYRLRLFLEQFSIPSCVLNGEL 292
Query: 318 PQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA--KLDSEFG 375
P SR HI+ +FN G +D +IATD G + ++ + PK D E G
Sbjct: 293 PLRSRCHIISQFNQGFYDCVIATDAEVL--------GAPIKGKRRGRGPKGDKASDPEAG 344
Query: 376 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
V RGIDF +V V+NF++P Y+HR GRT RA N G ++ V P E +I+ +
Sbjct: 345 VARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSHLGKIEELL 404
Query: 436 GDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLK 495
+ S I+ P+ + +E RYR D +SVTK A+RE+R ++++ E+L+SEKLK
Sbjct: 405 SGENR--SPILLPYQFRMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLK 461
Query: 496 AHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSS 555
+FE NP+DL LL+HD L HL VPDYL+ + L R K S
Sbjct: 462 TYFEDNPRDLQLLRHDLPLHPAVVKPHLGHVPDYLVPPALR------GLVRPHKKRKKLS 515
Query: 556 RRQGPRRKFRKSDPLKSF 573
++ + +PL+SF
Sbjct: 516 SSCRKAKRVKSQNPLRSF 533
>gi|336465803|gb|EGO53968.1| hypothetical protein NEUTE1DRAFT_148439 [Neurospora tetrasperma
FGSC 2508]
gi|350287366|gb|EGZ68613.1| P-loop containing nucleoside triphosphate hydrolase protein
[Neurospora tetrasperma FGSC 2509]
Length = 676
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 221/554 (39%), Positives = 331/554 (59%), Gaps = 46/554 (8%)
Query: 11 EVKQAEEEEAEAEEEK-----SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKD 65
E KQ +E++ + + EK +F +LGLD RLV A+ K+ +KPTL+Q+ +IPL L G+D
Sbjct: 75 EQKQQDEKDEKKQSEKDDADLTFSDLGLDPRLVQAVAKQSFEKPTLVQRKAIPLALAGQD 134
Query: 66 VVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIEL 125
V+ +AKTGSGKT AY+LP+L + + +AL+LVPTREL QV+ + A
Sbjct: 135 VLCKAKTGSGKTAAYVLPVLSGILKRKATDPTPFTSALILVPTRELADQVHKAIDAFSAF 194
Query: 126 CKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKIL 185
C +Q +LT ++ + LR+ LA PD++++TP + +G L L+ L
Sbjct: 195 CTKDIQ--SAKLTDNVSDAVLRSLLANAPDVIVSTPARAWHNIESGALSIA----KLQYL 248
Query: 186 VLDEADLLLSYGYEDDLKALSAVIPR-GCQCLLMSATSSSD-VDKLKKLILHNPYILTLP 243
VLDEADL+LSYGY++D++ ++ +P+ G Q +MSAT SD +D LK NP +L L
Sbjct: 249 VLDEADLVLSYGYDEDMENIARSLPKGGVQTTMMSATLVSDELDTLKGFFCRNPTMLDLK 308
Query: 244 EVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFL 303
E +DE + QF++ C E DK L + KL+L++ L+F ID A+RLKLF
Sbjct: 309 EEFSNEDE----KLTQFYVKCGEDDKWLISYLIFKLQLIKGPCLVFVADIDRAYRLKLFF 364
Query: 304 EKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD-----------TQTKEKDQSD 352
E+F I+S +LN+ELP N+R+ I+EEFN G++D +IA+D+ + KE+
Sbjct: 365 EQFSIRSCVLNSELPINTRIKIIEEFNRGIYDIIIASDERSEVFLEDEKTEEKKEEQGEK 424
Query: 353 EGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYN 412
+ G K K + D E+GV RGIDFKNV VINF+MP +++ Y+HRIGRT RA
Sbjct: 425 KEGEEKKNGKGKKKKGRRDQEYGVSRGIDFKNVAAVINFDMPTSSSSYIHRIGRTARAGR 484
Query: 413 TGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA--------------PFPLLAQNAVE 458
G ++S+V P ++ F + K +D ++A P+ ++ +E
Sbjct: 485 AGIALSMVVPHDL--FGKHKPTSIKQCEKDEKVLAKVMRQQAKLNRKLEPYN-FNKDQME 541
Query: 459 SLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDL-SKK 517
+ RYR D ++VTK+A+RE+R ++LR E+L SE LK +FE NP +L L+HD +L +K
Sbjct: 542 AFRYRMNDALRAVTKVAIREARTRELRQELLRSETLKRYFEENPHELSHLRHDGELGTKM 601
Query: 518 PPASHLRDVPDYLL 531
+HL+ VPDYLL
Sbjct: 602 RQQAHLKHVPDYLL 615
>gi|51830470|gb|AAU09764.1| YLR276C [Saccharomyces cerevisiae]
Length = 594
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 233/598 (38%), Positives = 336/598 (56%), Gaps = 55/598 (9%)
Query: 18 EEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGK-DVVARAKTGSGK 76
E A ++ +FE D RL+ A+ G Q PTLIQ +IPL L+ K D++A+A TGSGK
Sbjct: 9 EGAYIDDSTTFEAFHFDSRLLQAIKNIGFQYPTLIQSHAIPLALQQKRDIIAKAATGSGK 68
Query: 77 TFAYLLPLLHRLFNESSP---KSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLK 133
T AYL+P++ + + ++LVPTREL QQVY+ + L+ C + +
Sbjct: 69 TLAYLIPVIETILEYKKTIDNGEENGTLGIILVPTRELAQQVYNVLEKLVLYCSKDI--R 126
Query: 134 VVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLL 193
+ ++S M S L L P+I++ TPG + L T + S S ++ LK LV+DE DL+
Sbjct: 127 TLNISSDMSDSVLSTLLMDQPEIIVGTPGKLLDLLQTKI-NSISLNE-LKFLVVDEVDLV 184
Query: 194 LSYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 251
L++GY+DDL + +P + Q LMSAT + D+ LK+ +P IL DE
Sbjct: 185 LTFGYQDDLNKIGEYLPLKKNLQTFLMSATLNDDIQALKQKFCRSPAILKF------NDE 238
Query: 252 VIPKN---VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGI 308
I KN + Q+++ SE DK L + KL L++ K LIF N ID +RLKL +E+FGI
Sbjct: 239 EINKNQNKLLQYYVKVSEFDKFLLCYVIFKLNLIKGKTLIFVNNIDRGYRLKLVMEQFGI 298
Query: 309 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ-TKEKDQSDEGGHVDSRKSKKHPK 367
KS ILN+ELP NSR HI+++FN ++ LIATDDT+ KE+D E GH + +K +
Sbjct: 299 KSCILNSELPVNSRQHIVDQFNKNVYQLLIATDDTEYIKEEDDEIEEGHNTENQEEKSLE 358
Query: 368 AKLDS----------------EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAY 411
+ ++ E+GV RG+DFKNV V+NF++P A YVHR+GRT R
Sbjct: 359 GEPENDKKPSKKKKVQVKKDKEYGVSRGVDFKNVACVLNFDLPTTAKSYVHRVGRTARGG 418
Query: 412 NTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA--------------PFPLLAQNAV 457
TG ++S V P +K F + K + +D I++ P+ Q V
Sbjct: 419 KTGTAISFVVP--LKEFGKHKPSMLQTAKKDERILSRIIKQQSKLGLELQPYK-FDQKQV 475
Query: 458 ESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKK 517
E+ RYR ED ++VT++A+RE+R ++L+ E+L SEKLK HFE NPK+L L+HDK+L
Sbjct: 476 EAFRYRMEDGFRAVTQVAIREARVKELKQELLASEKLKRHFEENPKELQSLRHDKELHPA 535
Query: 518 PPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQG--PRRKFRKSDPLKSF 573
HL+ VPDYLL + VK K S ++G + K K DPLK+F
Sbjct: 536 RVQQHLKRVPDYLLPESARGNGTKVKFVPFHNAKKRHSHKKGRVSKPKNGKVDPLKNF 593
>gi|452843615|gb|EME45550.1| hypothetical protein DOTSEDRAFT_52793 [Dothistroma septosporum
NZE10]
Length = 644
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 239/636 (37%), Positives = 343/636 (53%), Gaps = 95/636 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF L LD+RL+ A+N PT +Q +IPL +EGKDV+ARAKTGSGKT AYLLP +H
Sbjct: 30 SFATLNLDVRLLQAVNNSKFSAPTPVQVKAIPLAIEGKDVLARAKTGSGKTLAYLLPTIH 89
Query: 87 RLFNESSPKSKL-APAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASD 145
+ + + AL+LVPT+EL QV + V A C G ++ + + A+
Sbjct: 90 NILQRKAANKRFKTTTALILVPTKELATQVVTTVKAFTLFCAGDIRCE--NIARKEDAAV 147
Query: 146 LRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL 205
+A LA PDIV+ATP + + L+ D +K L++DEADL+LSYGY+DDLK++
Sbjct: 148 TKARLAQKPDIVVATPARAVQWSNDETLKL----DEIKQLIIDEADLVLSYGYKDDLKSI 203
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE--VIPKNVQQFWIS 263
+ +P G Q ++MSAT ++VD L L T PE+ D+ E V + Q+ +
Sbjct: 204 ATSLPAGVQKIMMSATLRTEVDDLSSLFFSKQE-GTGPEILDLSSEEAVEKPALAQYTVR 262
Query: 264 CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+E +K L I + KL+L++ K +IF ID +R+KLFLE+FGI+S +LN+ELP NSRL
Sbjct: 263 TAEDEKFLLIYAIFKLQLIKGKIIIFVADIDRCYRIKLFLEQFGIRSCVLNSELPVNSRL 322
Query: 324 HILEEFNAGLFDYLIATDD----------TQTKEK------------------------- 348
H++EEFN G++D +IA D+ T +++
Sbjct: 323 HVVEEFNRGVYDIIIAADEGEVVGIEEAKTANRKRRRLEKEAEKEEEEDEAGEGMEDAIE 382
Query: 349 ------DQSDEGGHVDSRK--SKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGY 400
+ EGG + + +KK K + D E+GV RGIDF+ V V+NF++P N+ Y
Sbjct: 383 PVEAGAEDGAEGGAAPAVQGPAKKERKPRNDREYGVSRGIDFRYVTCVLNFDLPANSKSY 442
Query: 401 VHRIGRTGRAYNTGASVSLVSPDEM----------------KIFEEIKSFVGDDENEDSN 444
HRIGRT RA TG ++S P E K+ ++IK D +E
Sbjct: 443 THRIGRTARAGQTGMALSFYVPQEHYRKHKPTSIAQCEMDEKVLDKIKQKQADKGDE--- 499
Query: 445 IIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKD 504
I + L +E RYR D ++VT+IAVRE+R ++LRNE++ SEKLK HFE NP+D
Sbjct: 500 -IKEWG-LDWAKLEGFRYRLADALRAVTRIAVREARTKELRNELIKSEKLKRHFEENPED 557
Query: 505 LDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEAC------------KMVKLARAAMGNK 552
L L+HD + HL+ VPDYLL + + A + +L +A NK
Sbjct: 558 LRHLRHDTESHAVRQQPHLKHVPDYLLPSGGKAAVSKDVGFVGIRKDRENRLRKARAFNK 617
Query: 553 NSSRRQGPRRKFRKSDPLKSFSAEPTKRAGKGRMKR 588
R +G K + DPLKS +A KGR K+
Sbjct: 618 --GRGKGRLAKGKGLDPLKSLNA-------KGRGKK 644
>gi|323347358|gb|EGA81630.1| Dbp9p [Saccharomyces cerevisiae Lalvin QA23]
gi|365764102|gb|EHN05627.1| Dbp9p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 594
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 233/598 (38%), Positives = 336/598 (56%), Gaps = 55/598 (9%)
Query: 18 EEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGK-DVVARAKTGSGK 76
E A ++ +FE LD RL+ A+ G Q PTLIQ +IPL L+ K D++A+A TGSGK
Sbjct: 9 EGAYIDDSTTFEAFHLDSRLLQAIKNIGFQYPTLIQSHAIPLALQQKRDIIAKAATGSGK 68
Query: 77 TFAYLLPLLHRLFNESSP---KSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLK 133
T AYL+P++ + + ++LVPTREL QQVY+ + L+ C + +
Sbjct: 69 TLAYLIPVIETILEYKKTIDNGEENGTLGIILVPTRELAQQVYNVLEKLVLYCSKDI--R 126
Query: 134 VVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLL 193
+ ++S M S L L P+I++ TPG + L T + S S ++ LK LV+DE DL+
Sbjct: 127 TLNISSDMSDSVLSTLLMDQPEIIVGTPGKLLDLLQTKI-NSISLNE-LKFLVVDEVDLV 184
Query: 194 LSYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 251
L++GY+DDL + +P + Q LMSAT + D+ LK+ +P IL DE
Sbjct: 185 LTFGYQDDLNKIGEYLPLKKNLQTFLMSATLNDDIQALKQKFCRSPAILKF------NDE 238
Query: 252 VIPKN---VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGI 308
I KN + Q+++ SE DK L + KL L++ K LIF N ID +RLKL +E+FGI
Sbjct: 239 EINKNQNKLLQYYVKVSEFDKFLLCYVIFKLNLIKGKTLIFVNNIDRGYRLKLVMEQFGI 298
Query: 309 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ-TKEKDQSDEGGHVDSRKSKKHPK 367
KS ILN+ELP NSR HI+++FN ++ LIATDD + KE+D E GH + +K +
Sbjct: 299 KSCILNSELPVNSRQHIVDQFNKNVYQLLIATDDXEYIKEEDDEIEEGHNTENQEEKSLE 358
Query: 368 AKLDS----------------EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAY 411
+ ++ E+GV RG+DFKNV V+NF++P A YVHR+GRT R
Sbjct: 359 GEPENDKKPSKKKKVQVKKDKEYGVSRGVDFKNVACVLNFDLPTTAKSYVHRVGRTARGG 418
Query: 412 NTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA--------------PFPLLAQNAV 457
TG ++S V P +K F + K + +D I++ P+ Q V
Sbjct: 419 KTGTAISFVVP--LKEFGKHKPSMLQTAKKDERILSRIIKQQSKLGLELQPYK-FDQKQV 475
Query: 458 ESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKK 517
E+ RYR ED ++VT++A+RE+R ++L+ E+L SEKLK HFE NPK+L L+HDK+L
Sbjct: 476 EAFRYRMEDGFRAVTQVAIREARVKELKQELLASEKLKRHFEENPKELQSLRHDKELHPA 535
Query: 518 PPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQG--PRRKFRKSDPLKSF 573
HL+ VPDYLL + VK K S ++G + K K DPLK+F
Sbjct: 536 RVQQHLKRVPDYLLPESARGNGTKVKFVPFHNAKKRHSHKKGRVSKPKNGKVDPLKNF 593
>gi|126136425|ref|XP_001384736.1| ATP-dependent RNA helicase DBP9 (DEAD-box protein 9)
[Scheffersomyces stipitis CBS 6054]
gi|146286107|sp|A3LV40.1|DBP9_PICST RecName: Full=ATP-dependent RNA helicase DBP9
gi|126091958|gb|ABN66707.1| ATP-dependent RNA helicase DBP9 (DEAD-box protein 9)
[Scheffersomyces stipitis CBS 6054]
Length = 581
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 223/580 (38%), Positives = 341/580 (58%), Gaps = 35/580 (6%)
Query: 19 EAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGK-DVVARAKTGSGKT 77
EA ++ S++ LD RLV A+++ G + PTLIQ ++IPL LE K D++A+A TGSGKT
Sbjct: 8 EAYVDDNSSWDSFHLDARLVQAIDQLGFEHPTLIQASAIPLALEEKRDIIAKASTGSGKT 67
Query: 78 FAYLLPLLHRLFNESSPKS-KLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQ 136
AY++P++H L ++ +S +++LVPTREL QV V L L ++ +
Sbjct: 68 GAYVIPIIHNLLTDAEVESGNHHIKSIILVPTRELSNQVLQFVEKL--LVYSNNRINAIN 125
Query: 137 LTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSY 196
L++++ + + L P+I+I+TP + + L + +++ L +DE DL+LSY
Sbjct: 126 LSANLSDQVVNSLLMNKPEIIISTPAKLIQVLEKNANKDLIDLSTVRNLTIDEVDLVLSY 185
Query: 197 GYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIP 254
GY +DL+ L +P + Q LMSAT + D++ LK P IL L + ++++I
Sbjct: 186 GYLEDLQKLETYLPIKKNLQTFLMSATVNDDLNDLKTRFCSRPAILKLNDEESAQNKLI- 244
Query: 255 KNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILN 314
Q++ +E DK L + KL L++ K L+F N ID +RLKLFLE+FGI+ ILN
Sbjct: 245 ----QYYARTTEFDKFLLAYVIFKLNLIKGKTLVFVNNIDRGYRLKLFLEQFGIRCCILN 300
Query: 315 AELPQNSRLHILEEFNAGLFDYLIATDDTQ--TKEKDQSDEGGHVDSR-------KSKKH 365
+ELP NSRLHI+EE+N +++ LIATD+T T EKD+ + D + +SKK
Sbjct: 301 SELPINSRLHIVEEYNKNVYNLLIATDETNDFTVEKDEQQQEESQDKKASSAKTKQSKKS 360
Query: 366 PKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSP--- 422
K K D+E+GV RG+DF+NV V+NF++P + Y+HRIGRT RA G ++S V P
Sbjct: 361 KKQKKDTEYGVSRGVDFRNVACVLNFDLPTTSKAYIHRIGRTARAGKAGMALSFVLPIKE 420
Query: 423 ---------DEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTK 473
K E+I + ++++ I P+ VE RYR+ED ++VT+
Sbjct: 421 VGKHKTASLSTAKKDEKILRRIVKQQSKNGFEIKPYQ-FDMKQVEGFRYRSEDAFRAVTQ 479
Query: 474 IAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDA 533
A+RE+R ++L+NE++NS+KLK FE NP+DL L+HDK+L SHL+ VPDYLL
Sbjct: 480 TAIREARIKELKNELINSDKLKRFFEENPQDLASLRHDKELHPTRVQSHLKRVPDYLLPE 539
Query: 534 KTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSF 573
++ K + + +R++ P RK+DPLKSF
Sbjct: 540 SARQDPKKIGFVPFHKNKVHKNRKKKPTG--RKADPLKSF 577
>gi|390600267|gb|EIN09662.1| ATP-dependent RNA helicase dbp9 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 634
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 227/570 (39%), Positives = 332/570 (58%), Gaps = 81/570 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF + LD RL+ AL G +PTL+Q +IPL LEG+D++ARA+TGSGKT AY +P++
Sbjct: 15 SFSHI-LDARLLRALADLGFARPTLVQAKAIPLALEGRDILARARTGSGKTAAYCIPVIQ 73
Query: 87 RLFNESS----PKSKLAPA-----ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQL 137
++ + + P+ + AP AL+LVPTREL +QV S + AL+ C+ +V +V
Sbjct: 74 KVLSANGVAIDPRQQSAPTDKHTHALILVPTRELAEQVSSHLRALLAYCENEV---IVSN 130
Query: 138 TSSMPASDL-RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS-LKILVLDEADLLLS 195
+S S L + L P IV++TP + L+ +L+SK+ S ++ LV+DEADL+ S
Sbjct: 131 VASGATSHLQKTLLEDRPQIVVSTPS---RVLT--LLKSKTVDISRIECLVIDEADLIFS 185
Query: 196 YGYEDDLKAL--SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVI 253
YG+++D++ + +P+ Q LMSAT + DV+ LK L L NP IL L E D
Sbjct: 186 YGHDEDIRQILGGGYLPKIFQSFLMSATMTEDVETLKGLALRNPAILRLEEGEDQA---- 241
Query: 254 PKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAIL 313
N+ Q+ + CSE DK L +LKL+L++ K +IF NT+D +RLKLFLE+F IKS +L
Sbjct: 242 -ANLTQYSVRCSEVDKFLLTYVILKLKLIKGKCIIFVNTVDRCYRLKLFLEQFSIKSCVL 300
Query: 314 NAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSD---------------EGGHVD 358
N+ELP NSR H+++EFN G++DY+IATD++ + ++ SD E G
Sbjct: 301 NSELPLNSRYHVVQEFNQGVYDYIIATDESGGRGEEDSDDETDAEVLSTQREDPEDGETS 360
Query: 359 -----------------------SRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQ 395
S++SK D E+GV RG+DF +V V+NF++P
Sbjct: 361 KRKPKKRKRTETSATPDSQHPKPSKRSKGGKVKSTDREYGVTRGVDFIDVACVLNFDLPS 420
Query: 396 NAAGYVHRIGRTGRAYNTGASVSLVSPDE-------------MKIFEEIKSFVGDDENED 442
++ Y HR+GRT RA TG S+S V P E K E+ + + ++
Sbjct: 421 SSRAYTHRVGRTARAGRTGMSLSYVVPKEEWGKNKIVGCLETAKKDEKTFARIEKEQAAR 480
Query: 443 SNIIAPFPL-LAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVN 501
+ I + +AQ VE+ RYR ED +SVT+ AV+E+R ++L+ EILNS+KLKAHFE N
Sbjct: 481 GSKIKEYKFDMAQ--VEAFRYRMEDALRSVTRAAVKEARIKELKTEILNSDKLKAHFEDN 538
Query: 502 PKDLDLLKHDKDLSKKPPASHLRDVPDYLL 531
P DL+ L+HDK L H++ VP YLL
Sbjct: 539 PLDLEYLRHDKPLHPTRVQPHMKHVPKYLL 568
>gi|340726173|ref|XP_003401436.1| PREDICTED: probable ATP-dependent RNA helicase DDX56-like [Bombus
terrestris]
Length = 550
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 224/574 (39%), Positives = 342/574 (59%), Gaps = 35/574 (6%)
Query: 15 AEEEEAEAEEE---KSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAK 71
+ E E + E E K+F EL LD R++ A++K G +PTLIQ+ +IPL++EGKD++ RA+
Sbjct: 3 SNEMEVDDENETKPKNFHELELDDRILKAISKLGWVEPTLIQEKAIPLMMEGKDILIRAR 62
Query: 72 TGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQ 131
TGSGKT A+ +PL+ ++ + ++K L++ P++ELC+Q++ ++ L C +V
Sbjct: 63 TGSGKTAAFTIPLIQKILSNKRMQTKQEIKGLIVAPSKELCKQIHDVIICLTVKCSREV- 121
Query: 132 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 191
K + ++ + S + LA PDIV+ TP + + L ++ K SL+ L++DEAD
Sbjct: 122 -KAIDVSPQLDLSAQKPLLAEKPDIVVGTPSRLLQHLKANNMKLKQ---SLETLIIDEAD 177
Query: 192 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 251
L+ S+GYED++K+L +P Q L SAT S DV LKKL+L NP IL L E
Sbjct: 178 LVFSFGYEDEIKSLLNYLPIVYQAALASATLSEDVVTLKKLVLRNPAILKLEE-----PP 232
Query: 252 VIP-KNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 310
+ P + + ++ E DK + LLKL LV+ K +IF NT+D ++LKLFLE+FGI +
Sbjct: 233 LAPLSQLSHYSLAAEENDKAAILYALLKLHLVRGKTIIFVNTVDRCYKLKLFLEQFGIPT 292
Query: 311 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL 370
+LN+ELP SR + +FN+G +D +IA+D ++S E H+ K + K
Sbjct: 293 CVLNSELPAVSRCRAVTQFNSGTYDIIIASD-------EKSLEEPHIMKVKRGRRKK--- 342
Query: 371 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE 430
D E GV RGIDF+ V VINF+ PQ+ Y+HR GRT R N G ++S VS E + E+
Sbjct: 343 DKESGVARGIDFQFVSNVINFDFPQDVNSYIHRAGRTARGKNQGTALSFVSIRERPLLEQ 402
Query: 431 IKSFVGDDENEDSNI-IAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEIL 489
++S + N D+ F L VE RYRA+D K+VT+IAVRE+R ++++ E+L
Sbjct: 403 VESELKHCYNRDTLFKTYQFKL---EEVEGFRYRAKDAWKAVTRIAVREARLKEIKQEVL 459
Query: 490 NSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAM 549
N +KLK++FE NPKDL L+ DK L SHL+DVP+Y++ + ++V + R
Sbjct: 460 NCQKLKSYFEDNPKDLQSLRQDKALHTVKLQSHLKDVPEYIVPPTLK---RLVGINRKRK 516
Query: 550 GNKN--SSRRQGPRRKF--RKSDPLKSFSAEPTK 579
N+ +S+ + K+ R S+PL S + K
Sbjct: 517 FNREAAASKPTATQLKYQARASNPLVSLQIKNMK 550
>gi|297288380|ref|XP_001089984.2| PREDICTED: probable ATP-dependent RNA helicase DDX56 isoform 1
[Macaca mulatta]
Length = 550
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 228/558 (40%), Positives = 326/558 (58%), Gaps = 32/558 (5%)
Query: 21 EAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAY 80
E E FE +GLD RL+ A+ G +PTLIQ+ +IPL LEGKD++ARA+TGSGKT AY
Sbjct: 6 EDSESLGFEHMGLDPRLLQAVTDMGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAY 65
Query: 81 LLPLLHRLFNE--SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLT 138
+P+L L + + P + A LVLVPT+EL +Q S + L C V +V ++
Sbjct: 66 AIPMLQLLLHRKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCARDV--RVANVS 123
Query: 139 SSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGY 198
++ ++ RA L PD+V+ TP + LS S DSL++LV+DEADLL S+G+
Sbjct: 124 AAEDSASQRAMLMEKPDVVVGTPS---RILSHLQQDSLKLRDSLELLVVDEADLLFSFGF 180
Query: 199 EDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ 258
E++LK+L +PR Q LMSAT + DV LK+L+LHNP L L E P +Q
Sbjct: 181 EEELKSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE----SQLPGPDQLQ 236
Query: 259 QFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAEL 317
QF + C +E DK L + LLKL L++ K+L+F NT++ ++RL+LFLE+F I + +LN EL
Sbjct: 237 QFQVVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGEL 296
Query: 318 PQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA--KLDSEFG 375
P SR HI+ +FN G +D +IATD G V ++ + PK D E G
Sbjct: 297 PLRSRCHIISQFNQGFYDCVIATDAEVL--------GAPVKGKRRGRGPKGDKASDPEAG 348
Query: 376 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
V RGIDF +V V+NF++P Y+HR GRT RA N G ++ V P E +I+ +
Sbjct: 349 VARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSHLGKIEELL 408
Query: 436 GDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLK 495
+ I+ P+ + +E RYR D +SVTK A+RE+R ++++ E+L+SEKLK
Sbjct: 409 SGENR--GPILLPYQFRMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLK 465
Query: 496 AHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSS 555
+FE NP+DL LL+HD L HL VPDYL+ + + K + K SS
Sbjct: 466 TYFEDNPRDLQLLRHDLPLHPAVVKPHLGHVPDYLVPPALRGLVRPHKKRK-----KLSS 520
Query: 556 RRQGPRRKFRKSDPLKSF 573
R+ R+ + +PL+SF
Sbjct: 521 CRKA--RRVKSQNPLRSF 536
>gi|452985016|gb|EME84773.1| hypothetical protein MYCFIDRAFT_207390 [Pseudocercospora fijiensis
CIRAD86]
Length = 658
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 232/613 (37%), Positives = 347/613 (56%), Gaps = 71/613 (11%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
+F L +D RL+ A++K+ PT +Q +IPL L G+DV+ARAKTGSGKT AYLLP +H
Sbjct: 62 AFASLDIDPRLLQAISKQKFTTPTPVQSRAIPLALTGQDVLARAKTGSGKTLAYLLPTVH 121
Query: 87 RLFNE--SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
+ S KSK + L+LVPT+EL QV + + C ++++ +T + A+
Sbjct: 122 AILQRKAGSKKSKTT-SVLILVPTKELATQVTNAAKDITSFCANAIRIE--NITRNEDAN 178
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
RA L+ PDIVIATPG + + VL+ ++LK L++DEADL+L Y DD++A
Sbjct: 179 VTRARLSEQPDIVIATPGRANQYYNQEVLKL----NALKHLIIDEADLILGYEENDDVQA 234
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK--NVQQFWI 262
++ +P G Q +++SA+ S +DKL L P PE+ D+K E + + Q+ +
Sbjct: 235 IAGALPAGVQKMMVSASLSDQLDKLSLLFF--PEGSQQPEILDLKSEEAKEKPTLAQYTV 292
Query: 263 SCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 322
+E +K L + + KL+L++ K +IF ID +R+KLFLE+FGI+S +LN+ELP NSR
Sbjct: 293 KTAEDEKFLLLYAIFKLQLIKGKFIIFVADIDRCYRVKLFLEQFGIRSCVLNSELPVNSR 352
Query: 323 LHILEEFNAGLFDYLIATDDTQT------KEKD--------------------QSDEGGH 356
LH+++EFN G+++ +IA D+ + K K + + G
Sbjct: 353 LHVVQEFNRGVYNTIIAADEAEVIGNEGGKRKKRREAEQEDEEVEQEAEAQDAEKENGDS 412
Query: 357 VDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGAS 416
SR +KK K++ D E+GV RGIDF+NV V+NF++PQ+ Y HRIGRT RA TG +
Sbjct: 413 STSRPAKKQRKSRNDREYGVSRGIDFQNVTCVLNFDLPQSNKSYTHRIGRTARAGQTGMA 472
Query: 417 VSLVSPDEM------------KIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRA 464
+S P E+ + EE+ + + + E + + L +E RYR
Sbjct: 473 LSFWVPKELYRKHKPTSIAQCEKDEEVITKIVKKQAEKGAEVKEWG-LDWAKLEGFRYRL 531
Query: 465 EDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLR 524
D ++VT+IAVRE+R Q+LRNE++ SEKLK HFE NP+DL L+HD + HL+
Sbjct: 532 ADALRAVTRIAVREARTQELRNELIKSEKLKRHFEENPEDLKHLRHDTETHAVRSQPHLK 591
Query: 525 DVPDYLLDAKTQEAC------------KMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKS 572
VPDYLL ++A K K+ +A NK +R +G K + DPLKS
Sbjct: 592 HVPDYLLPQGGKQAVAKDVGYVGIRKDKENKIRKARAFNK--ARGKGRLAKGKGLDPLKS 649
Query: 573 FSAEPTKRAGKGR 585
F+A G+G+
Sbjct: 650 FNAR-----GRGK 657
>gi|402863582|ref|XP_003896086.1| PREDICTED: probable ATP-dependent RNA helicase DDX56 isoform 1
[Papio anubis]
Length = 546
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 229/558 (41%), Positives = 326/558 (58%), Gaps = 32/558 (5%)
Query: 21 EAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAY 80
E E FE +GLD RL+ A+ G +PTLIQ+ +IPL LEGKD++ARA+TGSGKT AY
Sbjct: 2 EDSEALGFEHMGLDPRLLQAVTDMGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAY 61
Query: 81 LLPLLHRLFNE--SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLT 138
+P+L L + + P + A LVLVPT+EL +Q S + L C V +V ++
Sbjct: 62 AIPMLQLLLHRKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCARDV--RVANVS 119
Query: 139 SSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGY 198
++ ++ RA L PD+V+ TP + LS S DSL++LV+DEADLL S+G+
Sbjct: 120 AAEDSASQRAMLMEKPDVVVGTPS---RILSHLQQDSLKLRDSLELLVVDEADLLFSFGF 176
Query: 199 EDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ 258
E++LK+L +PR Q LMSAT + DV LK+L+LHNP L L E P +Q
Sbjct: 177 EEELKSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE----SQLPGPDQLQ 232
Query: 259 QFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAEL 317
QF + C +E DK L + LLKL L++ K+L+F NT++ ++RL+LFLE+F I + +LN EL
Sbjct: 233 QFQVVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGEL 292
Query: 318 PQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA--KLDSEFG 375
P SR HI+ +FN G +D +IATD G V ++ + PK D E G
Sbjct: 293 PLRSRCHIISQFNQGFYDCVIATDAEVL--------GAPVKGKRRGRGPKGDKASDPEAG 344
Query: 376 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
V RGIDF +V V+NF++P Y+HR GRT RA N G ++ V P E +I+ +
Sbjct: 345 VARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPPEQSHLGKIEELL 404
Query: 436 GDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLK 495
+ I+ P+ + +E RYR D +SVTK A+RE+R ++++ E+L+SEKLK
Sbjct: 405 SGENR--GPILLPYQFRMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLK 461
Query: 496 AHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSS 555
+FE NP+DL LL+HD L HL VPDYL+ + + K + K SS
Sbjct: 462 TYFEDNPRDLQLLRHDLPLHPAVVKPHLGHVPDYLVPPALRGLVRPHKKRK-----KLSS 516
Query: 556 RRQGPRRKFRKSDPLKSF 573
R+ RK + +PL+SF
Sbjct: 517 CRKA--RKAKSQNPLRSF 532
>gi|380813950|gb|AFE78849.1| putative ATP-dependent RNA helicase DDX56 [Macaca mulatta]
gi|383419375|gb|AFH32901.1| putative ATP-dependent RNA helicase DDX56 [Macaca mulatta]
gi|384947812|gb|AFI37511.1| putative ATP-dependent RNA helicase DDX56 [Macaca mulatta]
Length = 546
Score = 374 bits (959), Expect = e-100, Method: Compositional matrix adjust.
Identities = 228/558 (40%), Positives = 326/558 (58%), Gaps = 32/558 (5%)
Query: 21 EAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAY 80
E E FE +GLD RL+ A+ G +PTLIQ+ +IPL LEGKD++ARA+TGSGKT AY
Sbjct: 2 EDSEALGFEHMGLDPRLLQAVTDMGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAY 61
Query: 81 LLPLLHRLFNE--SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLT 138
+P+L L + + P + A LVLVPT+EL +Q S + L C V +V ++
Sbjct: 62 AIPMLQLLLHRKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCARDV--RVANVS 119
Query: 139 SSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGY 198
++ ++ RA L PD+V+ TP + LS S DSL++LV+DEADLL S+G+
Sbjct: 120 AAEDSASQRAMLMEKPDVVVGTPS---RILSHLQQDSLKLRDSLELLVVDEADLLFSFGF 176
Query: 199 EDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ 258
E++LK+L +PR Q LMSAT + DV LK+L+LHNP L L E P +Q
Sbjct: 177 EEELKSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE----SQLPGPDQLQ 232
Query: 259 QFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAEL 317
QF + C +E DK L + LLKL L++ K+L+F NT++ ++RL+LFLE+F I + +LN EL
Sbjct: 233 QFQVVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGEL 292
Query: 318 PQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA--KLDSEFG 375
P SR HI+ +FN G +D +IATD G V ++ + PK D E G
Sbjct: 293 PLRSRCHIISQFNQGFYDCVIATDAEVL--------GAPVKGKRRGRGPKGDKASDPEAG 344
Query: 376 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
V RGIDF +V V+NF++P Y+HR GRT RA N G ++ V P E +I+ +
Sbjct: 345 VARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSHLGKIEELL 404
Query: 436 GDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLK 495
+ I+ P+ + +E RYR D +SVTK A+RE+R ++++ E+L+SEKLK
Sbjct: 405 SGENR--GPILLPYQFRMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLK 461
Query: 496 AHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSS 555
+FE NP+DL LL+HD L HL VPDYL+ + + K + K SS
Sbjct: 462 TYFEDNPRDLQLLRHDLPLHPAVVKPHLGHVPDYLVPPALRGLVRPHKKRK-----KLSS 516
Query: 556 RRQGPRRKFRKSDPLKSF 573
R+ R+ + +PL+SF
Sbjct: 517 CRKA--RRVKSQNPLRSF 532
>gi|430812630|emb|CCJ29978.1| unnamed protein product [Pneumocystis jirovecii]
Length = 582
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 214/549 (38%), Positives = 319/549 (58%), Gaps = 53/549 (9%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
+F + +D RL+ A++K G KPT +Q IPL LEGKDV A+A+TGSGKT AYL+P++
Sbjct: 3 TFSSMSMDARLLRAISKIGFHKPTYVQSQVIPLALEGKDVFAQARTGSGKTAAYLIPIIE 62
Query: 87 RLFNESS--PKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
L + +L +++LVPTREL QV + L C G++ ++VV L +++ +
Sbjct: 63 SLLKTKKVVTQDQLETKSIILVPTRELASQVVKNIKELTFYC-GKI-VRVVNLAANISDN 120
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
+ ++ P+IV+ TP + L+ L + +SL+ LV+DE DL+LSYGY +DL
Sbjct: 121 AAKILVSDYPEIVVGTPSRILVHLNGSNLHVQ---ESLQHLVIDEFDLILSYGYLEDLNH 177
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264
+ IP+ Q LMSAT + DVD+LKK+I +P IL L E N+ Q+ + C
Sbjct: 178 IIRYIPKSAQMFLMSATLTEDVDELKKMICKDPIILKLDETNK------NANLVQYSVKC 231
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
SE +K L+ +LKL L++ K +IF N+ID +RLKLFLE+FGI+ ILN+ELP NSRLH
Sbjct: 232 SEDEKFLFAFVILKLRLIKGKIIIFVNSIDRCYRLKLFLEQFGIRCCILNSELPVNSRLH 291
Query: 325 ILEEFNAGLFDYLIATDDTQTKEK--------------------DQSDEGGHVDSRKS-- 362
I+EEFN +++ ++ATD+ +K S+E + D+ ++
Sbjct: 292 IIEEFNKNIYNIILATDENDLLKKPDSASSIKGRVIFFLCIYLISNSEENINCDTTQAVL 351
Query: 363 -----KKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASV 417
KK K D+E+GV RGIDFKNV V+NF++P Y+HR GRT RA G +
Sbjct: 352 KNNSSKKQKKIHRDNEYGVSRGIDFKNVTCVLNFDLPTTVKSYIHRSGRTARADKDGMVM 411
Query: 418 SLVSPDEM------------KIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAE 465
S + P+ + K E I + D+ I P+ ++ V + RYR E
Sbjct: 412 SFIVPENLWGKHKSTILESAKYDESIFQAIEKDQEAKGATIKPYSFNMEH-VNAFRYRME 470
Query: 466 DVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRD 525
D +++T+ +RE+R ++LR EIL+S+KLK +F+ NP DL+ L+HDK+L HL+
Sbjct: 471 DALRAITRTVIREAREKELRMEILSSKKLKEYFDENPNDLEQLRHDKELHPARIQPHLKH 530
Query: 526 VPDYLLDAK 534
+PDYLL K
Sbjct: 531 IPDYLLPKK 539
>gi|348560130|ref|XP_003465867.1| PREDICTED: probable ATP-dependent RNA helicase DDX56-like [Cavia
porcellus]
Length = 547
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 227/559 (40%), Positives = 323/559 (57%), Gaps = 39/559 (6%)
Query: 24 EEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLP 83
E FE +GLD RL+ A+ G +PTLIQ+ +IPL LEGKD++ARA+TGSGKT AY +P
Sbjct: 5 ESLGFEHMGLDPRLLQAVADLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIP 64
Query: 84 LLHRLFNE--SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSM 141
+L L + + P + A AL+LVPT+EL +Q + L C V +V ++++
Sbjct: 65 MLQLLLHRKATGPVVEQAVKALILVPTKELARQAQFMIQQLAAYCARDV--RVANVSAAE 122
Query: 142 PASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDD 201
+ RA L PD+V+ TP + L L+ DSL++LV+DEADLL S+G+EDD
Sbjct: 123 DTASQRAMLMEKPDVVVGTPSRILNHLQQDNLK---LRDSLELLVVDEADLLFSFGFEDD 179
Query: 202 LKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW 261
LK+L +PR Q LMSAT + DV LK+L+LHNP L L E P +QQF
Sbjct: 180 LKSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE----SQLPGPDQLQQFQ 235
Query: 262 ISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 320
+ C +E DK L + LLKL L++ K+L+F N+++ ++RL+LFLE+F I + +LN ELP
Sbjct: 236 VVCETEEDKFLLLYALLKLSLIRGKSLLFVNSLERSYRLRLFLEQFSIPTCVLNGELPLR 295
Query: 321 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA--KLDSEFGVVR 378
SR HI+ +FN G +D +IATD G ++ + PK D E GV R
Sbjct: 296 SRCHIISQFNQGFYDCVIATDSDVL--------GAPAKGKQRGRKPKGDKASDPEAGVAR 347
Query: 379 GIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD 438
GIDF +V V+NF++P Y+HR GRT RA N G ++ V P E I+ + D
Sbjct: 348 GIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSQLRRIEELL-TD 406
Query: 439 ENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHF 498
E E S ++ P+ + +E RYR +D +SVTK A+RE+R ++++ E+L+SEKLK +F
Sbjct: 407 EGEASALL-PYQFHMEE-IEGFRYRCKDAMRSVTKQAIREARLKEIKEELLHSEKLKTYF 464
Query: 499 EVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQ 558
E NP+DL LL+HD L HL VPDYL+ R + ++
Sbjct: 465 EDNPRDLQLLRHDLPLHPAVVKPHLGHVPDYLVPPAL----------RGLVRTHRKRKKL 514
Query: 559 GPRRKFRK----SDPLKSF 573
P RK +K +PL+SF
Sbjct: 515 APGRKAKKVKKTQNPLRSF 533
>gi|390356945|ref|XP_790864.3| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
DDX56-like [Strongylocentrotus purpuratus]
Length = 559
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 221/571 (38%), Positives = 333/571 (58%), Gaps = 51/571 (8%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
+F +GLD R++ AL K G PTLIQ+ +IPL LEGKD++ARA+TGSGKT AY +PL+
Sbjct: 12 TFRGMGLDDRVLKALAKLGWSSPTLIQEKAIPLALEGKDILARARTGSGKTAAYAIPLVQ 71
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
++ + A AL+LVP+RELC Q + + + + C ++ K ++ + S
Sbjct: 72 KILTLKETAREQATRALILVPSRELCSQAFKNIQEISKCCSKEI--KCADVSGQVDLSAQ 129
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
R L PDIV+ TP + L+ ++ S +SL++LV+DEADL+ S+G+E D++AL
Sbjct: 130 RPLLMERPDIVLGTPS---RILAHIQAKNLSLQNSLEMLVIDEADLVFSFGHEADMRALL 186
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK--NVQQFWISC 264
+ P+ Q +LMSAT S DV LKKL+LHNP L L E +P+ + Q+ + C
Sbjct: 187 SHFPKIYQAILMSATLSEDVKTLKKLVLHNPITLKLAE------SQLPEADRLSQYQVRC 240
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
E DK L I TLLKL+L++ K +IF N+ID +RLKL+LE+F + +LN+ELP NSR H
Sbjct: 241 IEEDKYLLIYTLLKLKLIRGKTIIFVNSIDRCYRLKLYLEQFSVPVCLLNSELPVNSRCH 300
Query: 325 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 384
I+ +FN GL+D ++A++++ + + DE + ++ K + D E+GV RGIDF N
Sbjct: 301 IVNQFNTGLYDIIVASEESSLFDGGKRDEAE--ERKEKKGKGQKXKDKEYGVSRGIDFHN 358
Query: 385 VHTVINFEMPQNAAG--YVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI-KSFVGDDENE 441
V NF + I RT R G ++S V+ E + + + + +GDD
Sbjct: 359 QQNVNNFMFDDIHLNIKMLLLICRTARGEKMGTALSFVNEQEQDLLDNVEQELIGDD--- 415
Query: 442 DSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVN 501
+ +I P+ + +E RYRA+D ++VTK+AVRE+R ++++ EI NS+KLKA+FE N
Sbjct: 416 GTPLIKPYQ-FKMSEIEGFRYRAKDAMRAVTKVAVREARVKEIKQEIFNSKKLKAYFEDN 474
Query: 502 PKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGN-KNSSRRQGP 560
P+DL LL+HDK L + S L++VP+Y+ + +A G +SRR+ P
Sbjct: 475 PRDLQLLRHDKILQRAKVHSDLKNVPEYV-------------VPKALRGTIPTTSRRKAP 521
Query: 561 RRKFRKSDPLKSFSAEPTKRAGKGRMKREGR 591
+R T GKG KRE R
Sbjct: 522 KR---------------TAADGKGVQKRESR 537
>gi|149704807|ref|XP_001495871.1| PREDICTED: probable ATP-dependent RNA helicase DDX56 [Equus
caballus]
Length = 546
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 215/513 (41%), Positives = 310/513 (60%), Gaps = 25/513 (4%)
Query: 24 EEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLP 83
E FE +GLD RL+ A+ G +PTLIQ+ +IPL LEGKD++ARA+TGSGKT AY +P
Sbjct: 5 EALGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIP 64
Query: 84 LLHRLFNE--SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSM 141
+L L + + P + A LVLVPT+EL +Q S + L C + +V ++++
Sbjct: 65 MLQLLLHRKATGPAVEQAVRGLVLVPTKELARQAQSMIQQLAAYCARDI--RVANVSAAE 122
Query: 142 PASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDD 201
++ RA L PD+V+ TP + L+ S DSL++LV+DEADLL S+G+E++
Sbjct: 123 DSASQRAVLMEKPDVVVGTPS---RILNHLQQDSLKLRDSLELLVVDEADLLFSFGFEEE 179
Query: 202 LKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW 261
LK+L +PR Q LMSAT + DV LK+L+LHNP L L E P+ +QQF
Sbjct: 180 LKSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE----SQLPGPEQLQQFQ 235
Query: 262 ISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 320
+ C +E DK L + LLKL L++ K+L+F NT++ ++RL+LFLE+F I + +LN ELP
Sbjct: 236 VVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPLR 295
Query: 321 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL--DSEFGVVR 378
SR HI+ +FN G +D +IATD G V ++ K PK D E GV R
Sbjct: 296 SRCHIISQFNQGFYDCVIATDAEVL--------GAPVKGKRQGKGPKGDRASDPEAGVAR 347
Query: 379 GIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD 438
GIDF +V V+NF++P Y+HR GRT RA N G ++ V P E +I+ +G +
Sbjct: 348 GIDFHHVCAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSHLGKIEELLGGE 407
Query: 439 ENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHF 498
+ ++ P+ + +E RYR D +SVTK ++RE+R ++++ E+L+SEKLK +F
Sbjct: 408 ST--APVLLPYQFRMEE-IEGFRYRCRDAMRSVTKQSIREARLKEIKEELLHSEKLKTYF 464
Query: 499 EVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 531
E NP+DL LL+HD L HL VPDYL+
Sbjct: 465 EDNPRDLQLLRHDLPLHPAVVKPHLGHVPDYLV 497
>gi|410951930|ref|XP_003982643.1| PREDICTED: probable ATP-dependent RNA helicase DDX56 [Felis catus]
Length = 547
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 218/510 (42%), Positives = 312/510 (61%), Gaps = 25/510 (4%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
FE +GLD RL+ A+ G +PTLIQ+ +IPL LEGKD++ARA+TGSGKT AY +P+L
Sbjct: 8 GFEHMGLDPRLLQAVADLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQ 67
Query: 87 RLFNE--SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
L + + P + A LVLVPT+EL +Q S V L C + +V ++++ ++
Sbjct: 68 LLLHRKATGPAVEQAVRGLVLVPTKELARQARSMVQQLAAYCARDI--RVADVSAAEDSA 125
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
RA L PDIV+ TP + L+ S + DSL++LV+DEADLL S+G+E++LK+
Sbjct: 126 SQRAVLMEKPDIVVGTPS---RILNHLQQDSLTLRDSLELLVVDEADLLFSFGFEEELKS 182
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264
L +PR Q LMSAT + DV LK+L+LHNP L L E P ++QF + C
Sbjct: 183 LLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE----SQLPGPDQLKQFQVVC 238
Query: 265 -SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+E DK L + LLKL L++ K+L+F NT++ ++RL+LFLE+FGI + +LN ELP SR
Sbjct: 239 ETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFGIPACVLNGELPLRSRC 298
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL--DSEFGVVRGID 381
HI+ +FN G +D +IATD G V ++ K PK D E GV RGID
Sbjct: 299 HIISQFNQGFYDCVIATDTEVL--------GAPVKGKRRGKGPKGDRASDPEAGVARGID 350
Query: 382 FKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENE 441
F +V V+NF++P Y+HR GRT RA N G ++ V P E + I+ + ENE
Sbjct: 351 FHHVCAVLNFDLPPTPEAYIHRAGRTARANNPGMVLTFVLPAEQSHLDTIEELLC-GENE 409
Query: 442 DSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVN 501
+ ++ P+ + +E+ RYR D +SVTK A+RE+R ++++ E+L+SE+LK +FE N
Sbjct: 410 -APVLLPYQFRMEE-IEAFRYRCRDAMRSVTKQAIREARLKEIKEELLHSERLKTYFEDN 467
Query: 502 PKDLDLLKHDKDLSKKPPASHLRDVPDYLL 531
P+DL LL+HD L HL VPDYL+
Sbjct: 468 PRDLQLLRHDLPLHPAVVKPHLGHVPDYLV 497
>gi|355560653|gb|EHH17339.1| Putative ATP-dependent RNA helicase DDX56 [Macaca mulatta]
Length = 529
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 218/515 (42%), Positives = 307/515 (59%), Gaps = 25/515 (4%)
Query: 21 EAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAY 80
E E FE +GLD RL+ A+ G +PTLIQ+ +IPL LEGKD++ARA+TGSGKT AY
Sbjct: 2 EDSEALGFEHMGLDPRLLQAVTDMGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAY 61
Query: 81 LLPLLHRLFNE--SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLT 138
+P+L L + + P + A LVLVPT+EL +Q S + L C V +V ++
Sbjct: 62 AIPMLQLLLHRKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCARDV--RVANVS 119
Query: 139 SSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGY 198
++ ++ RA L PD+V+ TP + LS S DSL++LV+DEADLL S+G+
Sbjct: 120 AAEDSASQRAMLMEKPDVVVGTPS---RILSHLQQDSLKLRDSLELLVVDEADLLFSFGF 176
Query: 199 EDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ 258
E++LK+L +PR Q LMSAT + DV LK+L+LHNP L L E P +Q
Sbjct: 177 EEELKSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE----SQLPGPDQLQ 232
Query: 259 QFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAEL 317
QF + C +E DK L + LLKL L++ K+L+F NT++ ++RL+LFLE+F I + +LN EL
Sbjct: 233 QFQVVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGEL 292
Query: 318 PQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA--KLDSEFG 375
P SR HI+ +FN G +D +IATD G V ++ + PK D E G
Sbjct: 293 PLRSRCHIISQFNQGFYDCVIATDAEVL--------GAPVKGKRRGRGPKGDKASDPEAG 344
Query: 376 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
V RGIDF +V V+NF++P Y+HR GRT RA N G ++ V P E +I+ +
Sbjct: 345 VARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSHLGKIEELL 404
Query: 436 GDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLK 495
+ I+ P+ + +E RYR D +SVTK A+RE+R ++++ E+L+SEKLK
Sbjct: 405 SGENR--GPILLPYQFRMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLK 461
Query: 496 AHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYL 530
+FE NP+DL LL+HD L HL VPDYL
Sbjct: 462 TYFEDNPRDLQLLRHDLPLHPAVVKPHLGHVPDYL 496
>gi|336381184|gb|EGO22336.1| hypothetical protein SERLADRAFT_416842 [Serpula lacrymans var.
lacrymans S7.9]
Length = 633
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 231/582 (39%), Positives = 331/582 (56%), Gaps = 96/582 (16%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF L LD R++ AL G +PTL+Q +IPL LEG+D++ARA+TGSGKT AY +P++
Sbjct: 15 SFSHL-LDARILRALADMGFARPTLVQSKAIPLALEGRDILARARTGSGKTAAYCIPVVQ 73
Query: 87 RLFNESSPKSKLAP--------AALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLT 138
++ S K+ L P L+LVPTREL +QV + + L+ C+ + L V
Sbjct: 74 KIL---SAKASLPPDDDAHTSARVLILVPTRELSEQVTAYLRGLVAYCEKNIVLANV--- 127
Query: 139 SSMPASDL-RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSY 196
+S S L RA LA PDIVI+TP + G LQSK+ S SL L++DEADL+LSY
Sbjct: 128 ASGATSHLQRALLADKPDIVISTPS-----RTLGFLQSKALSLASLDSLIIDEADLILSY 182
Query: 197 GYEDDLKAL--SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIP 254
G+++D++ + +P+ Q LMSAT + DV+ LK L L NP IL L E D
Sbjct: 183 GHDEDIRQIFGGEYLPKVYQSFLMSATMTDDVETLKGLALRNPAILKLEEGEDE-----A 237
Query: 255 KNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILN 314
++ Q+ + CSE DK L +LKL+L++ K ++F N +D +RLKLFLE+F IKS +LN
Sbjct: 238 ASLTQYAVRCSEVDKFLLTYVILKLKLIKGKCILFVNDVDRCYRLKLFLEQFSIKSCVLN 297
Query: 315 AELPQNSRLHILEEFNAGLFDYLIATDDTQTK-EKDQSDEG------------------- 354
+ELP NSR H ++EFN G++DY+IATD++ + E+D DE
Sbjct: 298 SELPLNSRYHTVQEFNKGVYDYIIATDESGGRAEQDSDDEAVEDQQAQAEEDVAVVPTQR 357
Query: 355 ------------GHVDSR--------------------KSKKHPKAKLDSEFGVVRGIDF 382
G V S + +KH K K D E+GV RG+DF
Sbjct: 358 ESTDIENATEALGEVQSETGSKKRKRTEGSSTPGPSKSRKRKHRKGK-DKEYGVTRGVDF 416
Query: 383 KNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVS-LVSPDEM------------KIFE 429
+V V+NF++P ++ Y HR+GRT RA TG S+S +VS D+ K E
Sbjct: 417 VDVACVLNFDLPTSSRSYTHRVGRTARAGRTGMSLSFVVSEDQWGKNKAVGCLESAKKDE 476
Query: 430 EIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEIL 489
+ S + ++ + I + + VE+ RYR ED ++VT+ A++E+R ++L+ EI+
Sbjct: 477 LVFSKIEKEQAARGSKIKEYNFDMKQ-VEAFRYRMEDGLRAVTRSAIKEARVKELKTEII 535
Query: 490 NSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 531
NSEKLKAHFE NP DL+ L+HDK L +H++ VP YLL
Sbjct: 536 NSEKLKAHFEDNPLDLEYLRHDKPLHPTRVQAHMKHVPKYLL 577
>gi|336368382|gb|EGN96725.1| hypothetical protein SERLA73DRAFT_161756 [Serpula lacrymans var.
lacrymans S7.3]
Length = 634
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 228/582 (39%), Positives = 329/582 (56%), Gaps = 95/582 (16%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF L LD R++ AL G +PTL+Q +IPL LEG+D++ARA+TGSGKT AY +P++
Sbjct: 15 SFSHL-LDARILRALADMGFARPTLVQSKAIPLALEGRDILARARTGSGKTAAYCIPVVQ 73
Query: 87 RLFNESSPKSKLAP--------AALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLT 138
++ S K+ L P L+LVPTREL +QV + + L+ C+ + L +
Sbjct: 74 KIL---SAKASLPPDDDAHTSARVLILVPTRELSEQVTAYLRGLVAYCEKNIVL--ANVA 128
Query: 139 SSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYG 197
S + RA LA PDIVI+TP + G LQSK+ S SL L++DEADL+LSYG
Sbjct: 129 SGATSHLQRALLADKPDIVISTPS-----RTLGFLQSKALSLASLDSLIIDEADLILSYG 183
Query: 198 YEDDLKAL--SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK 255
+++D++ + +P+ Q LMSAT + DV+ LK L L NP IL L E D
Sbjct: 184 HDEDIRQIFGGEYLPKVYQSFLMSATMTDDVETLKGLALRNPAILKLEEGEDE-----AA 238
Query: 256 NVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNA 315
++ Q+ + CSE DK L +LKL+L++ K ++F N +D +RLKLFLE+F IKS +LN+
Sbjct: 239 SLTQYAVRCSEVDKFLLTYVILKLKLIKGKCILFVNDVDRCYRLKLFLEQFSIKSCVLNS 298
Query: 316 ELPQNSRLHILEEFNAGLFDYLIATDDTQTK-EKDQSDEG-------------------- 354
ELP NSR H ++EFN G++DY+IATD++ + E+D DE
Sbjct: 299 ELPLNSRYHTVQEFNKGVYDYIIATDESGGRAEQDSDDEAVEDQQAQAEEDAVAVVPTQR 358
Query: 355 ------------GHVDSR--------------------KSKKHPKAKLDSEFGVVRGIDF 382
G V S + +KH K K D E+GV RG+DF
Sbjct: 359 ESTDIENATEALGEVQSETGSKKRKRTEGSSTPGPSKSRKRKHRKGK-DKEYGVTRGVDF 417
Query: 383 KNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVS-LVSPDEM------------KIFE 429
+V V+NF++P ++ Y HR+GRT RA TG S+S +VS D+ K E
Sbjct: 418 VDVACVLNFDLPTSSRSYTHRVGRTARAGRTGMSLSFVVSEDQWGKNKAVGCLESAKKDE 477
Query: 430 EIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEIL 489
+ S + ++ + I + + VE+ RYR ED ++VT+ A++E+R ++L+ EI+
Sbjct: 478 LVFSKIEKEQAARGSKIKEYNFDMKQ-VEAFRYRMEDGLRAVTRSAIKEARVKELKTEII 536
Query: 490 NSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 531
NSEKLKAHFE NP DL+ L+HDK L +H++ VP YLL
Sbjct: 537 NSEKLKAHFEDNPLDLEYLRHDKPLHPTRVQAHMKHVPKYLL 578
>gi|354543099|emb|CCE39817.1| hypothetical protein CPAR2_602350 [Candida parapsilosis]
Length = 573
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 231/578 (39%), Positives = 346/578 (59%), Gaps = 44/578 (7%)
Query: 22 AEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGK-DVVARAKTGSGKTFAY 80
+E+ +++ L LD RL+ A++K G + PTLIQ ++IPL LE K D++A+A TGSGKT AY
Sbjct: 12 VDEDTTWKSLNLDPRLLQAIDKLGFENPTLIQSSAIPLALEEKRDIIAKASTGSGKTAAY 71
Query: 81 LLPLLHRLFNESSPKSKLAPA--ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLT 138
LP++ L ++ L P ++VLVPTREL QV+ + LI+ ++ ++ L+
Sbjct: 72 ALPIIQNLLLDN-----LGPGIKSVVLVPTRELSNQVFQFMEQLIKHSNKKI--GILNLS 124
Query: 139 SSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD--SLKILVLDEADLLLSY 196
SS L + LA P+I+I+TP + + L + KS D S++ L +DE DL+LS+
Sbjct: 125 SSYSDQVLNSLLANKPEIIISTPNKLIQVLEMND-EKKSPIDLSSVRNLTIDEVDLILSF 183
Query: 197 GYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIP 254
GY +DL L + +P + Q LMSAT + D+++LK P IL L + D+++
Sbjct: 184 GYLEDLAKLESYLPVKKNLQTFLMSATINDDINELKTKFCTRPAILKLDDEQSNNDKLV- 242
Query: 255 KNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILN 314
QF+ +E DK L + KL L++ K ++F N ID +RLKLFLE+FGI+ ILN
Sbjct: 243 ----QFYAKTTEFDKFLLSYVIFKLNLIKGKTIVFVNNIDRGYRLKLFLEQFGIRCCILN 298
Query: 315 AELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKK---HP---KA 368
+ELP NSRLHI+EEFN ++ LIATD+ EKD+ E + D + S+K +P K+
Sbjct: 299 SELPINSRLHIVEEFNKNVYHLLIATDEISV-EKDEG-ENDNEDGKSSQKVVDNPKAKKS 356
Query: 369 KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE---- 424
K D E+GV RG+DFKNV V+NF++P + YVHRIGRT RA +G ++S V +
Sbjct: 357 KKDKEYGVSRGVDFKNVACVLNFDLPTTSKAYVHRIGRTARAGKSGMALSFVVASKEVGK 416
Query: 425 --------MKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAV 476
K E+I S + + ++ I P+ VE RYRA+D ++VT+ A+
Sbjct: 417 HKTATLSTAKRDEKILSRIVKQQEKNGFEIKPYQ-FDMKQVEGFRYRADDAFRAVTQTAI 475
Query: 477 RESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQ 536
RE+R ++L+NE++NSEKLK F+ NP++L L+HDK+L +HL+++P+YLL +
Sbjct: 476 REARVKELKNELINSEKLKRFFQENPQNLASLRHDKELHPARVQAHLKNLPEYLLPESAR 535
Query: 537 EACKMVKLARAAMGNK-NSSRRQGPRRKFRKSDPLKSF 573
K + NK N R++G + RK DPLKSF
Sbjct: 536 SDVKNIGFVPFHNKNKVNKYRKKGKPK--RKQDPLKSF 571
>gi|255718829|ref|XP_002555695.1| KLTH0G15224p [Lachancea thermotolerans]
gi|238937079|emb|CAR25258.1| KLTH0G15224p [Lachancea thermotolerans CBS 6340]
Length = 596
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 227/552 (41%), Positives = 323/552 (58%), Gaps = 50/552 (9%)
Query: 20 AEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGK-DVVARAKTGSGKTF 78
A ++ +FE LD RL+ ++ G +PTLIQ ++IPL LE + DV+A+A TGSGKT
Sbjct: 9 AYIDDSVTFESFQLDPRLLQSIKYNGYDRPTLIQSSAIPLALEQRRDVIAKAATGSGKTL 68
Query: 79 AYLLPLLHRLFN----ESSPKSKLAPAAL--VLVPTRELCQQVYSEVMALIELCKGQVQL 132
AYL+P++ + N E + P L +LVPTREL QQV S + L+ C V
Sbjct: 69 AYLIPVIQTILNYKQSEQNNSQTQEPKTLGIILVPTRELAQQVQSVLSKLVLYCSKDVH- 127
Query: 133 KVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEAD 191
+ L+S + S L + L P+++I+TP + L T +S + S + LK LV+DE D
Sbjct: 128 -SLNLSSQLSESVLTSLLLDRPEVLISTPSKLLNVLET---KSSALSLEDLKFLVIDEVD 183
Query: 192 LLLSYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVK 249
L+L++GY++DL +S+ +P + Q LMSAT + D+ LK +P IL L E K
Sbjct: 184 LVLTFGYQEDLNQISSYLPLKKNLQTFLMSATLNEDIQDLKMRFCRSPAILKLNEEEINK 243
Query: 250 DEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIK 309
D+ + Q+++ SE DK L + KL L++ K LIF N ID +RLKL LE+FGIK
Sbjct: 244 DQ---SKLLQYYVKVSEFDKFLLCYVIFKLGLLKGKTLIFVNNIDRGYRLKLVLEQFGIK 300
Query: 310 SAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQ------SDEGGHVD----- 358
S ILN+ELP NSR HI+EEFN ++ LIATDDT+ ++++ DEG +
Sbjct: 301 SCILNSELPANSRQHIVEEFNKNVYQLLIATDDTEYIKEEEDGQNLSDDEGAGENTADAN 360
Query: 359 -----SRKSK-KHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYN 412
S+K K K K D ++GV RG+DF+NV V+NF++P A YVHRIGRT RA
Sbjct: 361 SSASTSKKEKNKGINLKKDKDYGVSRGVDFQNVACVLNFDLPTTAKSYVHRIGRTARAGK 420
Query: 413 TGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA---------PFPLLAQN----AVES 459
+G ++S V P +K F + K + D I++ F +L + VE
Sbjct: 421 SGVAISFVVP--LKEFAKHKPSMCPTAKRDEKILSRIIKQQSKLGFEILPYSFDIKQVEG 478
Query: 460 LRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPP 519
RYR ED ++VT++AVRE+R ++L+ E+L S KLK HFE NP+DL L+HDK+L
Sbjct: 479 FRYRMEDGFRAVTQVAVREARVKELKQELLTSSKLKRHFEENPQDLQSLRHDKELHPARV 538
Query: 520 ASHLRDVPDYLL 531
HL+ VPDYLL
Sbjct: 539 QQHLKRVPDYLL 550
>gi|62896883|dbj|BAD96382.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 variant [Homo sapiens]
Length = 547
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 231/560 (41%), Positives = 324/560 (57%), Gaps = 35/560 (6%)
Query: 21 EAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAY 80
E E FE +GLD RL+ A+ G +PTLIQ+ +IPL LEGKD++ARA+TGSGKT AY
Sbjct: 2 EDSEALGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAY 61
Query: 81 LLPLLHRLFNE--SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLT 138
+P+L L + + P + A LVLVPT+EL +Q S + L C V +V ++
Sbjct: 62 AIPMLQLLLHRKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCARDV--RVANVS 119
Query: 139 SSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGY 198
++ + RA L PD+V+ TP + LS S DSL++LV+DEADLL S+G+
Sbjct: 120 AAEDSVSQRAVLMEKPDVVVGTPS---RILSHLQQDSLKLRDSLELLVVDEADLLFSFGF 176
Query: 199 EDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ 258
E++LK+L +PR Q LMSAT + DV LK+LILHNP L L E P +Q
Sbjct: 177 EEELKSLLCHLPRIYQAFLMSATFNEDVQALKELILHNPATLKLQE----SQLPGPDQLQ 232
Query: 259 QFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAEL 317
QF + C +E DK L + LLKL L++ K+L+F NT++ ++RL+LFLE+F I + +LN EL
Sbjct: 233 QFQVVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGEL 292
Query: 318 PQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA--KLDSEFG 375
P SR HI+ +FN G +D +IATD G V ++ + PK D E G
Sbjct: 293 PLRSRCHIISQFNQGFYDCVIATDAEVL--------GAPVKGKRRGRGPKGDKASDPEAG 344
Query: 376 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
V RGIDF +V V+NF++P Y+HR GRT RA N G ++ V P E +I+ +
Sbjct: 345 VARGIDFHHVSAVLNFDLPPTTEAYIHRAGRTARANNPGIVLTFVLPTEQFHLGKIEELL 404
Query: 436 GDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLK 495
+ I+ P+ + +E RYR D +SVTK A+RE+R ++++ E+L+SEKLK
Sbjct: 405 SGENR--GPILLPYQFRMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLK 461
Query: 496 AHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNK--N 553
+FE NP+DL LL+HD L HL VPDYL+ + L R K +
Sbjct: 462 TYFEDNPRDLQLLRHDLPLHPAVVKPHLGHVPDYLVPP------ALRGLVRPHKKRKKLS 515
Query: 554 SSRRQGPRRKFRKSDPLKSF 573
SS R+ R K +PL+SF
Sbjct: 516 SSCRKAKRAK--SQNPLRSF 533
>gi|10434373|dbj|BAB14238.1| unnamed protein product [Homo sapiens]
Length = 547
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 231/560 (41%), Positives = 324/560 (57%), Gaps = 35/560 (6%)
Query: 21 EAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAY 80
E E FE +GLD RL+ A+ G +PTLIQ+ +IPL LEGKD++ARA+TGSGKT AY
Sbjct: 2 EDSEALGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAY 61
Query: 81 LLPLLHRLFNE--SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLT 138
+P+L L + + P + A LVLVPT+EL +Q S + L C V +V ++
Sbjct: 62 AIPMLQLLLHRKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCARDV--RVANVS 119
Query: 139 SSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGY 198
++ + RA L PD+V+ TP + LS S DSL++LV+DEADLL S+G+
Sbjct: 120 AAEDSVSQRAVLMEKPDVVVGTPS---RTLSHLQQDSLKLRDSLELLVVDEADLLFSFGF 176
Query: 199 EDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ 258
E++LK+L +PR Q LMSAT + DV LK+LILHNP L L E P +Q
Sbjct: 177 EEELKSLLCHLPRIYQAFLMSATFNEDVQALKELILHNPVTLKLQE----SQLPGPDQLQ 232
Query: 259 QFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAEL 317
QF + C +E DK L + LLKL L++ K+L+F NT++ ++RL+LFLE+F I + +LN EL
Sbjct: 233 QFQVVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGEL 292
Query: 318 PQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA--KLDSEFG 375
P SR HI+ +FN G +D +IATD G V ++ + PK D E G
Sbjct: 293 PLRSRCHIISQFNQGFYDCVIATDAEVL--------GAPVKGKRRGRGPKGDKASDPEAG 344
Query: 376 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
V RGIDF +V V+NF++P Y+HR GRT RA N G ++ V P E +I+ +
Sbjct: 345 VARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQFHLGKIEELL 404
Query: 436 GDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLK 495
+ I+ P+ + +E RYR D +SVTK A+RE+R ++++ E+L+SEKLK
Sbjct: 405 SGENR--GPILLPYQFRMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLK 461
Query: 496 AHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNK--N 553
+FE NP+DL LL+HD L HL VPDYL+ + L R K +
Sbjct: 462 TYFEDNPRDLQLLRHDLPLHPAVVKPHLGHVPDYLVPP------ALRGLVRPHKKRKKLS 515
Query: 554 SSRRQGPRRKFRKSDPLKSF 573
SS R+ R K +PL+SF
Sbjct: 516 SSCRKAKRAK--SQNPLRSF 533
>gi|9506931|ref|NP_061955.1| probable ATP-dependent RNA helicase DDX56 isoform 1 [Homo sapiens]
gi|426356101|ref|XP_004045430.1| PREDICTED: probable ATP-dependent RNA helicase DDX56 isoform 1
[Gorilla gorilla gorilla]
gi|20139238|sp|Q9NY93.1|DDX56_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX56; AltName:
Full=ATP-dependent 61 kDa nucleolar RNA helicase;
AltName: Full=DEAD box protein 21; AltName: Full=DEAD
box protein 56
gi|11527084|gb|AAG36876.1|AF247666_1 DEAD-box RNA helicase [Homo sapiens]
gi|7576252|emb|CAB87992.1| nucleolar RNA-helicase [Homo sapiens]
gi|12052922|emb|CAB66635.1| hypothetical protein [Homo sapiens]
gi|12654785|gb|AAH01235.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [Homo sapiens]
gi|51094496|gb|EAL23752.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [Homo sapiens]
gi|119581498|gb|EAW61094.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56, isoform CRA_b [Homo
sapiens]
gi|123980624|gb|ABM82141.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [synthetic construct]
gi|123995445|gb|ABM85324.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [synthetic construct]
gi|168277808|dbj|BAG10882.1| ATP-dependent RNA helicase DDX56 [synthetic construct]
Length = 547
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 231/560 (41%), Positives = 324/560 (57%), Gaps = 35/560 (6%)
Query: 21 EAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAY 80
E E FE +GLD RL+ A+ G +PTLIQ+ +IPL LEGKD++ARA+TGSGKT AY
Sbjct: 2 EDSEALGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAY 61
Query: 81 LLPLLHRLFNE--SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLT 138
+P+L L + + P + A LVLVPT+EL +Q S + L C V +V ++
Sbjct: 62 AIPMLQLLLHRKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCARDV--RVANVS 119
Query: 139 SSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGY 198
++ + RA L PD+V+ TP + LS S DSL++LV+DEADLL S+G+
Sbjct: 120 AAEDSVSQRAVLMEKPDVVVGTPS---RILSHLQQDSLKLRDSLELLVVDEADLLFSFGF 176
Query: 199 EDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ 258
E++LK+L +PR Q LMSAT + DV LK+LILHNP L L E P +Q
Sbjct: 177 EEELKSLLCHLPRIYQAFLMSATFNEDVQALKELILHNPVTLKLQE----SQLPGPDQLQ 232
Query: 259 QFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAEL 317
QF + C +E DK L + LLKL L++ K+L+F NT++ ++RL+LFLE+F I + +LN EL
Sbjct: 233 QFQVVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGEL 292
Query: 318 PQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA--KLDSEFG 375
P SR HI+ +FN G +D +IATD G V ++ + PK D E G
Sbjct: 293 PLRSRCHIISQFNQGFYDCVIATDAEVL--------GAPVKGKRRGRGPKGDKASDPEAG 344
Query: 376 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
V RGIDF +V V+NF++P Y+HR GRT RA N G ++ V P E +I+ +
Sbjct: 345 VARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQFHLGKIEELL 404
Query: 436 GDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLK 495
+ I+ P+ + +E RYR D +SVTK A+RE+R ++++ E+L+SEKLK
Sbjct: 405 SGENR--GPILLPYQFRMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLK 461
Query: 496 AHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNK--N 553
+FE NP+DL LL+HD L HL VPDYL+ + L R K +
Sbjct: 462 TYFEDNPRDLQLLRHDLPLHPAVVKPHLGHVPDYLVPPALR------GLVRPHKKRKKLS 515
Query: 554 SSRRQGPRRKFRKSDPLKSF 573
SS R+ R K +PL+SF
Sbjct: 516 SSCRKAKRAK--SQNPLRSF 533
>gi|351706201|gb|EHB09120.1| Putative ATP-dependent RNA helicase DDX56 [Heterocephalus glaber]
Length = 546
Score = 370 bits (951), Expect = e-99, Method: Compositional matrix adjust.
Identities = 222/553 (40%), Positives = 326/553 (58%), Gaps = 28/553 (5%)
Query: 24 EEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLP 83
E FE +GLD RL+ A+ +G +PTLIQ+ +IPL LEGKD++ARA+TGSGKT AY +P
Sbjct: 5 ESLGFEHMGLDPRLLQAIADQGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIP 64
Query: 84 LLHRLFNE--SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSM 141
+L L + + P + A LVLVPT+EL +Q S + L C V +V ++++
Sbjct: 65 MLQLLLHRKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLAAYCARDV--RVANVSAAE 122
Query: 142 PASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDD 201
++ RA L PD+V+ TP + L L+ DSL++LV+DE DLL S+G+E++
Sbjct: 123 DSASQRAVLMEKPDVVVGTPSRILNHLQQDTLK---LRDSLELLVMDETDLLFSFGFEEE 179
Query: 202 LKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW 261
LK L +PR Q LMSAT + DV LK+L+LHNP L L E P +QQF
Sbjct: 180 LKNLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE----SQLPGPDQLQQFQ 235
Query: 262 ISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 320
+ C +E DK L + LLKL L++ K+L+F NT++ ++RL+LFLE+F I + +LN ELP +
Sbjct: 236 VVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPLH 295
Query: 321 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 380
SR HI+ +FN GL+D +IATD + + G RKSK + D E GV RGI
Sbjct: 296 SRCHIISQFNQGLYDCVIATDAEVLGPPGKGKQWG----RKSKGDKAS--DPEAGVARGI 349
Query: 381 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDEN 440
DF +V V+NF++P Y+HR GRT RA N G ++ V +E +I+ + D+ +
Sbjct: 350 DFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLREEQLQLGKIEELLSDEGS 409
Query: 441 EDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEV 500
+ ++ P+ + +E RYR D +SVTK A+RE+R ++++ E+L+SEKLK +FE
Sbjct: 410 --APVLLPYQFHMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFED 466
Query: 501 NPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGP 560
NP+DL LL+HD L HL VPDYL+ + + + K +
Sbjct: 467 NPRDLQLLRHDLPLHPAVVKPHLGHVPDYLVPPALRGLVGTHRKRKKLFSGKKA------ 520
Query: 561 RRKFRKSDPLKSF 573
+K + +PL+SF
Sbjct: 521 -KKVKTQNPLRSF 532
>gi|119581499|gb|EAW61095.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56, isoform CRA_c [Homo
sapiens]
Length = 547
Score = 370 bits (951), Expect = e-99, Method: Compositional matrix adjust.
Identities = 231/560 (41%), Positives = 324/560 (57%), Gaps = 35/560 (6%)
Query: 21 EAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAY 80
E E FE +GLD RL+ A+ G +PTLIQ+ +IPL LEGKD++ARA+TGSGKT AY
Sbjct: 2 EDSEALGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAY 61
Query: 81 LLPLLHRLFNESS--PKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLT 138
+P+L L + + P + A LVLVPT+EL +Q S + L C V +V ++
Sbjct: 62 AIPMLQLLLHRKAVGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCARDV--RVANVS 119
Query: 139 SSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGY 198
++ + RA L PD+V+ TP + LS S DSL++LV+DEADLL S+G+
Sbjct: 120 AAEDSVSQRAVLMEKPDVVVGTPS---RILSHLQQDSLKLRDSLELLVVDEADLLFSFGF 176
Query: 199 EDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ 258
E++LK+L +PR Q LMSAT + DV LK+LILHNP L L E P +Q
Sbjct: 177 EEELKSLLCHLPRIYQAFLMSATFNEDVQALKELILHNPVTLKLQE----SQLPGPDQLQ 232
Query: 259 QFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAEL 317
QF + C +E DK L + LLKL L++ K+L+F NT++ ++RL+LFLE+F I + +LN EL
Sbjct: 233 QFQVVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGEL 292
Query: 318 PQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA--KLDSEFG 375
P SR HI+ +FN G +D +IATD G V ++ + PK D E G
Sbjct: 293 PLRSRCHIISQFNQGFYDCVIATDAEVL--------GAPVKGKRRGRGPKGDKASDPEAG 344
Query: 376 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
V RGIDF +V V+NF++P Y+HR GRT RA N G ++ V P E +I+ +
Sbjct: 345 VARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQFHLGKIEELL 404
Query: 436 GDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLK 495
+ I+ P+ + +E RYR D +SVTK A+RE+R ++++ E+L+SEKLK
Sbjct: 405 SGENR--GPILLPYQFRMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLK 461
Query: 496 AHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNK--N 553
+FE NP+DL LL+HD L HL VPDYL+ + L R K +
Sbjct: 462 TYFEDNPRDLQLLRHDLPLHPAVVKPHLGHVPDYLVPPALR------GLVRPHKKRKKLS 515
Query: 554 SSRRQGPRRKFRKSDPLKSF 573
SS R+ R K +PL+SF
Sbjct: 516 SSCRKAKRAK--SQNPLRSF 533
>gi|402216480|gb|EJT96567.1| DEAD-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 621
Score = 370 bits (950), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 221/569 (38%), Positives = 325/569 (57%), Gaps = 68/569 (11%)
Query: 17 EEEAEAEEEKSFEELG--LDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGS 74
E EA ++F + LD RL+ AL +PT IQ +IPL LEG+D++ARA+TGS
Sbjct: 5 EPEASTSGGETFTSISPPLDFRLLRALADLSFLRPTPIQARAIPLALEGRDILARARTGS 64
Query: 75 GKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKV 134
GKT AY LP+ R+ + + A L+LVPTREL +QV + ++ C+ +V +
Sbjct: 65 GKTAAYCLPVTQRILQARNAGGRHATRGLILVPTRELAEQVKKFLDGALKYCQNEVMVSN 124
Query: 135 VQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLL 194
+ + + + L PDIVI+TP + LS+ L S ++ LV+DEADL+L
Sbjct: 125 IAAGAQLS----KTLLTEIPDIVISTPSKVLSALSSKYLTLAS----VESLVIDEADLIL 176
Query: 195 SYGYEDDLKAL--SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEV 252
SYG++ D++ L +P Q LMSAT + DV++L+ ++L NP IL L +D
Sbjct: 177 SYGHDADVRKLLQGDYLPNIYQSFLMSATMTEDVEQLRGMVLRNPAILRL------EDTD 230
Query: 253 IPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAI 312
+ +++ Q+ + CSE DK L + +LKL L++ K +IF N+ D +RLKLFLE+F I++ +
Sbjct: 231 VARSLSQYSVHCSEEDKFLLLYVILKLRLIRGKCIIFVNSPDRCYRLKLFLEQFSIRACV 290
Query: 313 LNAELPQNSRLHILEEFNAGLFDYLIATDDT----------QTKEKD------------- 349
L+AELP NSR HI++EFN+GL+DY++ATD++ QTK++D
Sbjct: 291 LDAELPLNSRFHIVQEFNSGLYDYVVATDESGVAAEGEEADQTKKEDTVIVEEQTTEIST 350
Query: 350 QSDEGGHV-----DSRKSKKHP------------KAKLDSEFGVVRGIDFKNVHTVINFE 392
Q DE + DS K K+ P + + D E+GV RGIDF +V VINF+
Sbjct: 351 QPDEDAIIESSTGDSLKRKRSPEPASQNKKKRKSRVRTDKEYGVSRGIDFVDVSCVINFD 410
Query: 393 MPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG--DDENEDSNIIAPFP 450
+P + Y HRIGRT RA TG ++S + +I S G +DEN I+
Sbjct: 411 LPPTSRAYTHRIGRTARAGKTGIAISFIVLFAHWGKNKIISLPGAKEDENVFDRILKDQS 470
Query: 451 --------LLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNP 502
+ VE+ RYRA D ++VT+ AVRE+R ++++ EIL SEKLKAHFE NP
Sbjct: 471 NRGGIKEWTFEEKQVEAFRYRAGDAMRAVTRAAVREARIKEVKEEILKSEKLKAHFEDNP 530
Query: 503 KDLDLLKHDKDLSKKPPASHLRDVPDYLL 531
DL L+HDK L + SH++ +P YL+
Sbjct: 531 LDLAYLRHDKPLHPQRIQSHMKHIPSYLI 559
>gi|392565268|gb|EIW58445.1| DEAD-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 649
Score = 370 bits (949), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 227/585 (38%), Positives = 328/585 (56%), Gaps = 99/585 (16%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF L LD R++ AL G +PTL+Q +IPL LE +D++ARA+TGSGKT AY +P++
Sbjct: 15 SFNHL-LDGRILRALADMGFARPTLVQTKAIPLALENRDILARARTGSGKTAAYCIPVVQ 73
Query: 87 RLFNESS------PKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSS 140
++ N PK + A AL+LVPTREL +QV + + +L+ C+ +V V ++S
Sbjct: 74 KVLNTKGNIAIDDPKRQ-ATRALILVPTRELAEQVSAHLRSLLTYCEDEVS--VANVSSG 130
Query: 141 MPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYE 199
+ L+ PD+VIATP + +LQ+K+ S D+L+ LV+DEADL+LSYG++
Sbjct: 131 TTTHLQKTLLSDNPDVVIATPS-----RALALLQAKTMSLDALESLVIDEADLILSYGHD 185
Query: 200 DDLKAL--SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNV 257
+D++ + +P+ Q LMSAT + DV+ LK L L +P IL L E DE N+
Sbjct: 186 EDVRQIFSGGFLPKVFQSFLMSATMTEDVEALKGLALRSPVILKLEE-----DEDEAANL 240
Query: 258 QQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAEL 317
Q+ + CSE DK L +LKL L++ K ++F N +D +RLKLFLE+F IKS +LN+EL
Sbjct: 241 TQYSVRCSEVDKFLLTYVILKLRLIKGKCILFVNDVDRCYRLKLFLEQFSIKSCVLNSEL 300
Query: 318 PQNSRLHILEEFNAGLFDYLIATD---------------------------DTQ------ 344
P NSR H ++EFN G++DY+IA+D DTQ
Sbjct: 301 PLNSRYHTVQEFNKGVYDYIIASDESTGRGEQDSDDEQEEDAAEENEDDFMDTQREAEDA 360
Query: 345 -----------------TKEKDQSDEGGHVDSRKSK----KHPKAKLDSEFGVVRGIDFK 383
++K S+ S KSK K K D+E+GV RG+DF
Sbjct: 361 AVAAPADPAPEDAPKSLKRKKATSEPTPEPSSSKSKANKRKRRKGASDAEYGVSRGVDFV 420
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM----KIFEEIKSFVGDDE 439
+V VINF++P ++ Y HR+GRT RA TG ++S V P E K+ ++S + D+E
Sbjct: 421 DVSCVINFDLPTSSRAYTHRVGRTARAGRTGMALSFVVPKEQWGRNKVVGGVESALRDEE 480
Query: 440 NEDSNIIAPFPL-------------LAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRN 486
I A VE+ RYR ED ++VT+ A++E+R ++L+
Sbjct: 481 -----IFARIEREQAARGSQLKEYQFDMKQVEAFRYRMEDALRAVTRSAIKEARIKELKT 535
Query: 487 EILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 531
EILNS+KLKAHFE NP DL+ L+HDK L SH++ +P YLL
Sbjct: 536 EILNSDKLKAHFEDNPLDLEYLRHDKPLHPTRVQSHMKHIPKYLL 580
>gi|114613145|ref|XP_001145021.1| PREDICTED: probable ATP-dependent RNA helicase DDX56 isoform 6 [Pan
troglodytes]
gi|410207178|gb|JAA00808.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [Pan troglodytes]
gi|410263070|gb|JAA19501.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [Pan troglodytes]
gi|410292962|gb|JAA25081.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [Pan troglodytes]
gi|410328987|gb|JAA33440.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [Pan troglodytes]
Length = 547
Score = 370 bits (949), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 231/560 (41%), Positives = 324/560 (57%), Gaps = 35/560 (6%)
Query: 21 EAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAY 80
E E FE +GLD RL+ A+ G +PTLIQ+ +IPL LEGKD++ARA+TGSGKT AY
Sbjct: 2 EDSEALGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAY 61
Query: 81 LLPLLHRLFNE--SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLT 138
+P+L L + + P + A LVLVPT+EL +Q S + L C V +V ++
Sbjct: 62 AIPMLQLLLHRKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCARDV--RVANVS 119
Query: 139 SSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGY 198
++ + RA L PD+V+ TP + LS S DSL++LV+DEADLL S+G+
Sbjct: 120 AAEDSVSQRAVLMEKPDVVVGTPS---RILSHLQQDSLKLRDSLELLVVDEADLLFSFGF 176
Query: 199 EDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ 258
E++LK+L +PR Q LMSAT + DV LK+LILHNP L L E P +Q
Sbjct: 177 EEELKSLLCHLPRIYQAFLMSATFNEDVQALKELILHNPVTLKLQE----SQLPGPDQLQ 232
Query: 259 QFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAEL 317
QF + C +E DK L + LLKL L++ K+L+F NT++ ++RL+LFLE+F I + +LN EL
Sbjct: 233 QFQVICETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGEL 292
Query: 318 PQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA--KLDSEFG 375
P SR HI+ +FN G +D +IATD G V ++ + PK D E G
Sbjct: 293 PLRSRCHIISQFNQGFYDCVIATDAEVL--------GAPVKGKRRGRGPKGDKASDLEAG 344
Query: 376 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
V RGIDF +V V+NF++P Y+HR GRT RA N G ++ V P E +I+ +
Sbjct: 345 VARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQFHLGKIEELL 404
Query: 436 GDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLK 495
+ I+ P+ + +E RYR D +SVTK A+RE+R ++++ E+L+SEKLK
Sbjct: 405 SGENR--GPILLPYQFRMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLK 461
Query: 496 AHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNK--N 553
+FE NP+DL LL+HD L HL VPDYL+ + L R K +
Sbjct: 462 TYFEDNPRDLQLLRHDLPLHPAVVKPHLGHVPDYLVPPALR------GLVRPHKKRKKLS 515
Query: 554 SSRRQGPRRKFRKSDPLKSF 573
SS R+ R K +PL+SF
Sbjct: 516 SSCRKAKRAK--SQNPLRSF 533
>gi|398405364|ref|XP_003854148.1| hypothetical protein MYCGRDRAFT_92212 [Zymoseptoria tritici IPO323]
gi|339474031|gb|EGP89124.1| hypothetical protein MYCGRDRAFT_92212 [Zymoseptoria tritici IPO323]
Length = 658
Score = 369 bits (948), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 241/641 (37%), Positives = 344/641 (53%), Gaps = 101/641 (15%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
+F L LD RL+ AL ++ + PT +QQ +IPL + GK V+ARAKTGSGKT AYLLP+LH
Sbjct: 40 TFSALNLDARLLQALTREKLSTPTSVQQKAIPLAIAGKHVLARAKTGSGKTLAYLLPILH 99
Query: 87 RLF-----NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSM 141
+ +S KSK +AL+LVPT+EL QV + V C G ++ + +T
Sbjct: 100 AILARKAGTTTSKKSKNVTSALILVPTKELAVQVAATVKDFTTFCAGDIRCE--NITRKE 157
Query: 142 PASDLRAALA-GPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYED 200
++ RA LA PDIVIATP + ++ VL+ + L+ LV+DEADL+LSY Y++
Sbjct: 158 DSAVTRARLADAVPDIVIATPSRACQWINQEVLKV----EDLRHLVIDEADLVLSYEYDE 213
Query: 201 DLKALSAVIPRGCQCLLMSATSSSDVDKLKKLIL-----HNPYILTLPEVGDVKDEVIPK 255
DL++L+ +P G Q ++MSAT ++VD L +L P IL L K+E K
Sbjct: 214 DLQSLATSLPTGVQKIMMSATLRAEVDTLTELFFGKEEGAGPTILDLS-----KEEADEK 268
Query: 256 -NVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILN 314
+ QF + +E +K L I + KL+L+ K ++F ID +R+KLFLE+FGI+S +LN
Sbjct: 269 ATLAQFTVRTAEDEKFLLIYAIFKLQLITGKVIVFVADIDRCYRVKLFLEQFGIRSCVLN 328
Query: 315 AELPQNSRLHILEEFNAGLFDYLIATDD-------------------------------- 342
+ELP NSRLH++EEFN G++D +IA D+
Sbjct: 329 SELPVNSRLHVVEEFNRGVYDIIIAADEGEIIGNEESKGRRKKNNRKAAQQEDADLEDAD 388
Query: 343 ----------TQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFE 392
+ +E + V SR +KK +++ D E+GV RGIDF+ V V+NF+
Sbjct: 389 EQPADDILPPVEDEEAEADSTSATVTSRPAKKPRRSQTDREYGVSRGIDFRYVTCVLNFD 448
Query: 393 MPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK-SFVGDDENEDSNIIAPFPL 451
+P A Y HRIGRT RA TG ++S P E+ + + K S + N+DS +
Sbjct: 449 LPPTAKSYTHRIGRTARAGRTGMALSFHVPAEL--YRKHKPSTIPQCANDDSVLADIIAS 506
Query: 452 LAQNAVE------------SLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFE 499
AQ + E RYR D +SVT+IAVRE+R ++LR E++ SEKLK HFE
Sbjct: 507 QAQKSAEVKAWGLDWAKLDGFRYRLADALRSVTRIAVREARTKELRAELIKSEKLKRHFE 566
Query: 500 VNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEAC------------KMVKLARA 547
NP DL L+HD + HL+ VP+YLL + + A K +L +A
Sbjct: 567 ENPDDLRHLRHDTESHAVRAQPHLKHVPEYLLPSGGKAAVSKDVGYVGMRRDKENRLRKA 626
Query: 548 AMGNKNSSRRQGPRRKFRKSDPLKSFSAEPTKRAGKGRMKR 588
NK R G K + DPL+S +A KGR K+
Sbjct: 627 RAVNKGKGR--GRLAKGKGLDPLRSLNA-------KGRGKK 658
>gi|426227857|ref|XP_004008031.1| PREDICTED: probable ATP-dependent RNA helicase DDX56 isoform 1
[Ovis aries]
Length = 552
Score = 369 bits (948), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 227/560 (40%), Positives = 329/560 (58%), Gaps = 30/560 (5%)
Query: 21 EAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAY 80
E E FE +GLD RL+ A+ G +PTLIQ+ +IPL LEGKD++ARA+TGSGKT AY
Sbjct: 2 EDPESLGFEHMGLDHRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAY 61
Query: 81 LLPLLHRLFNE--SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLT 138
+P+L L + + P + A ALVLVPT+EL +Q S + L C + +V ++
Sbjct: 62 AIPMLQLLLHRKATGPVVEQAVRALVLVPTKELARQAQSMIQQLAAYCARDI--RVANVS 119
Query: 139 SSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGY 198
++ + RA L PD+V+ TP + L L+ DS+++LV+DEADLL S+G+
Sbjct: 120 AAEDLASQRAVLMEKPDVVVGTPSRILNHLQQDNLK---LRDSMELLVVDEADLLFSFGF 176
Query: 199 EDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ 258
E++LK+L +PR Q LMSAT + DV LK+L+LHNP L L E P +Q
Sbjct: 177 EEELKSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE----SQLPGPDQLQ 232
Query: 259 QFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAEL 317
QF + C +E DK L + LLKL L++ K+L+F NT++ ++RL+LFLE+F I + +LN EL
Sbjct: 233 QFQVVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPACVLNGEL 292
Query: 318 PQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVV 377
P SR HI+ +FN G +D +IATD + G K K KA D E GV
Sbjct: 293 PLRSRCHIISQFNQGFYDCVIATDAEVLGPPVKGKHRG-----KGPKRDKAS-DPEAGVA 346
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RGIDF +V V+NF++P Y+HR GRT RA N G ++ V P E +I+ +
Sbjct: 347 RGIDFHHVCAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSQLGKIEELLSG 406
Query: 438 DENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAH 497
D + ++ P+ + +E RYR D +SVTK A+RE+R ++++ E+L+SEKLK +
Sbjct: 407 DSG--APVLLPYQFHMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTY 463
Query: 498 FEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRR 557
FE NP+DL LL+HD L HL +VPDYL+ T +V A + + + R+
Sbjct: 464 FEDNPRDLQLLRHDLPLHPAVVKPHLGNVPDYLVQLLT-----LVPPALRGLVHPHKKRK 518
Query: 558 QGP----RRKFRKSDPLKSF 573
+ P +K + +PL+SF
Sbjct: 519 KPPTSKKAKKAKTQNPLRSF 538
>gi|302685648|ref|XP_003032504.1| hypothetical protein SCHCODRAFT_67090 [Schizophyllum commune H4-8]
gi|300106198|gb|EFI97601.1| hypothetical protein SCHCODRAFT_67090 [Schizophyllum commune H4-8]
Length = 610
Score = 369 bits (948), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 215/547 (39%), Positives = 316/547 (57%), Gaps = 63/547 (11%)
Query: 33 LDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN-- 90
LD R++ AL G +PTL+Q +IPL LE +D++ARA+TGSGKT AY +PL+ ++ N
Sbjct: 20 LDQRVLRALADLGFARPTLVQAKAIPLALESRDILARARTGSGKTAAYCVPLVQKILNLN 79
Query: 91 ---ESSPKSKLAPA--ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASD 145
+ + APA AL+LVPTREL +QV + L+ C+G+V V+ + S A
Sbjct: 80 AKSVGTSRRAEAPATRALILVPTRELAEQVNGHLRKLLAYCEGEVS--VINVASGNTAGL 137
Query: 146 LRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKA 204
R ++ IVIATP + LQSK+ S +L LV+DEADL+LSYG+++D++
Sbjct: 138 QRTLISDTHHIVIATP-----SRALAFLQSKALSLSALDSLVIDEADLILSYGHDEDVRG 192
Query: 205 L--SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWI 262
+ +P+ Q LMSAT + DV+ LK L L NP IL L E + N+ Q+ +
Sbjct: 193 IFNGGYLPKVYQSFLMSATMTEDVEMLKGLALRNPAILKLEE------DPAAANLTQYAV 246
Query: 263 SCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 322
C++RDK L +LKL+L+ K +IF N +D +RLKLFLE+F IKS +LN+ELP NSR
Sbjct: 247 RCTQRDKFLLTYVILKLKLIHGKCIIFVNDVDRCYRLKLFLEQFSIKSCVLNSELPLNSR 306
Query: 323 LHILEEFNAGLFDYLIATDDT-----------------------------QTKEKDQSDE 353
H ++EFN G++DY+IATD++ + + D
Sbjct: 307 YHTVQEFNKGVYDYIIATDESGLGERDEEDIERETEAEAAGEEEAESSEDEAAKPDPPSA 366
Query: 354 GGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNT 413
K P+A D E+GV RG+DF +V V+NF++P +A Y HR+GRT RA
Sbjct: 367 SSAASPPTKAKRPRAS-DREYGVTRGVDFLDVAAVLNFDLPGSARAYTHRVGRTARAGRA 425
Query: 414 GASVSLVSPDEMKIFEEIKSFVG--DDE-------NEDSNIIAPFPLLAQNAVESLRYRA 464
G ++S VS ++ + + +G D+E + + + + + VE+ RYR
Sbjct: 426 GMALSFVSRPDLSDKDPVNRTLGRRDEEVFARIEREQGAGAVKEYRFDMRQ-VEAFRYRM 484
Query: 465 EDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLR 524
ED +SVT++AVRE+R ++L+ E+L SEKLKAHFE NP DL+ LKHD+ L + H++
Sbjct: 485 EDALRSVTRVAVREARVRELKAEVLGSEKLKAHFEDNPLDLEFLKHDRALHPQRVQPHMK 544
Query: 525 DVPDYLL 531
VP YL+
Sbjct: 545 FVPKYLI 551
>gi|440903065|gb|ELR53772.1| Putative ATP-dependent RNA helicase DDX56 [Bos grunniens mutus]
Length = 546
Score = 369 bits (947), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 217/514 (42%), Positives = 310/514 (60%), Gaps = 21/514 (4%)
Query: 21 EAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAY 80
E E FE +GLD RL+ A+ G +PTLIQ+ +IPL LEGKD++ARA+TGSGKT AY
Sbjct: 2 EDPESLGFEHMGLDHRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAY 61
Query: 81 LLPLLHRLFNE--SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLT 138
+P+L L + + P + A ALVLVPT+EL +Q S + L C + +V ++
Sbjct: 62 AIPMLQLLLHRKATGPVVEQAVRALVLVPTKELARQAQSMIQQLAAYCARDI--RVANVS 119
Query: 139 SSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGY 198
++ ++ RA L PD+V+ TP + L L+ DS+++LV+DEADLL S+G+
Sbjct: 120 AAEDSASQRAVLMEKPDVVVGTPSRILNHLQQDNLK---LRDSMELLVVDEADLLFSFGF 176
Query: 199 EDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ 258
E++LK+L +PR Q LMSAT + DV LK+L+LHNP L L E P +Q
Sbjct: 177 EEELKSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE----SQLPGPDQLQ 232
Query: 259 QFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAEL 317
QF + C +E DK L + LLKL L++ K+L+F NT++ ++RL+LFLE+F I + +LN EL
Sbjct: 233 QFQVVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPACVLNGEL 292
Query: 318 PQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVV 377
P SR HI+ +FN G +D +IATD + G K K KA D E GV
Sbjct: 293 PLRSRCHIISQFNQGFYDCVIATDAEVLGPPVKGKHRG-----KGPKRDKAS-DPEAGVA 346
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RGIDF +V V+NF++P Y+HR GRT RA N G ++ V P E +I+ +
Sbjct: 347 RGIDFHHVCAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSQLGKIEELLSG 406
Query: 438 DENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAH 497
D + ++ P+ + +E RYR D +SVTK A+RE+R ++++ E+L+SEKLK +
Sbjct: 407 DSG--APVLLPYQFHMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTY 463
Query: 498 FEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 531
FE NP+DL LL+HD L HL +VPDYL+
Sbjct: 464 FEDNPRDLQLLRHDLPLHPAVVKPHLGNVPDYLV 497
>gi|77735611|ref|NP_001029501.1| probable ATP-dependent RNA helicase DDX56 [Bos taurus]
gi|122140173|sp|Q3SZ40.1|DDX56_BOVIN RecName: Full=Probable ATP-dependent RNA helicase DDX56; AltName:
Full=DEAD box protein 56
gi|74267874|gb|AAI03170.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [Bos taurus]
gi|296488364|tpg|DAA30477.1| TPA: probable ATP-dependent RNA helicase DDX56 [Bos taurus]
Length = 546
Score = 369 bits (947), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 217/514 (42%), Positives = 310/514 (60%), Gaps = 21/514 (4%)
Query: 21 EAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAY 80
E E FE +GLD RL+ A+ G +PTLIQ+ +IPL LEGKD++ARA+TGSGKT AY
Sbjct: 2 EDPESLGFEHMGLDHRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAY 61
Query: 81 LLPLLHRLFNE--SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLT 138
+P+L L + + P + A ALVLVPT+EL +Q S + L C + +V ++
Sbjct: 62 AIPMLQLLLHRKATGPVVEQAVRALVLVPTKELARQAQSMIQQLAAYCARDI--RVANVS 119
Query: 139 SSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGY 198
++ ++ RA L PD+V+ TP + L L+ DS+++LV+DEADLL S+G+
Sbjct: 120 AAEDSASQRAVLMEKPDVVVGTPSRILNHLQQDNLK---LRDSMELLVVDEADLLFSFGF 176
Query: 199 EDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ 258
E++LK+L +PR Q LMSAT + DV LK+L+LHNP L L E P +Q
Sbjct: 177 EEELKSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE----SQLPGPDQLQ 232
Query: 259 QFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAEL 317
QF + C +E DK L + LLKL L++ K+L+F NT++ ++RL+LFLE+F I + +LN EL
Sbjct: 233 QFQVVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPACVLNGEL 292
Query: 318 PQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVV 377
P SR HI+ +FN G +D +IATD + G K K KA D E GV
Sbjct: 293 PLRSRCHIISQFNQGFYDCVIATDAEVLGPPVKGKHRG-----KGPKRDKAS-DPEAGVA 346
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RGIDF +V V+NF++P Y+HR GRT RA N G ++ V P E +I+ +
Sbjct: 347 RGIDFHHVCAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSQLGKIEELLSG 406
Query: 438 DENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAH 497
D + ++ P+ + +E RYR D +SVTK A+RE+R ++++ E+L+SEKLK +
Sbjct: 407 DSG--APVLLPYQFHMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTY 463
Query: 498 FEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 531
FE NP+DL LL+HD L HL +VPDYL+
Sbjct: 464 FEDNPRDLQLLRHDLPLHPAVVKPHLGNVPDYLV 497
>gi|448103033|ref|XP_004199934.1| Piso0_002489 [Millerozyma farinosa CBS 7064]
gi|359381356|emb|CCE81815.1| Piso0_002489 [Millerozyma farinosa CBS 7064]
Length = 572
Score = 369 bits (946), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 217/576 (37%), Positives = 322/576 (55%), Gaps = 34/576 (5%)
Query: 19 EAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGK-DVVARAKTGSGKT 77
E+ + ++ LD RLV A++ G PT +Q ++IPL LE K D++A+A TGSGKT
Sbjct: 8 ESYLNTDSTWSSFNLDPRLVQAIDHVGFSNPTYVQSSAIPLALEEKRDIIAKASTGSGKT 67
Query: 78 FAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQL 137
AY +P+L+ LF + + + +++LVPTREL QV + L+ +V V+ L
Sbjct: 68 AAYCIPILNNLFTSETEEKSIK--SVILVPTRELSSQVTKFLEQLLLFNSDKVS--VLNL 123
Query: 138 TSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYG 197
+S++ L + L PDIVI+TP + + L V + ++ L +DE DL++SYG
Sbjct: 124 SSNISEQVLNSLLINKPDIVISTPAKLLQFLEKNVNSNLINLSKVQSLTIDEVDLVISYG 183
Query: 198 YEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK 255
Y DDL+ L A +P + Q LMSAT + +V++LK P IL L + DE
Sbjct: 184 YSDDLQKLGAYLPAKKNLQTYLMSATINDEVNELKSRFCTKPAILKLDD-----DEATQN 238
Query: 256 NVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNA 315
N+ Q++ +E DK L + KL L++ K +IF N ID +RLKLFLE+FGI+S ILN+
Sbjct: 239 NLVQYYAKTTEFDKFLLAYVIFKLNLIKGKTIIFVNNIDRGYRLKLFLEQFGIRSCILNS 298
Query: 316 ELPQNSRLHILEEFNAGLFDYLIATDDTQTK------EKDQSDEGGHVDSRKSKKHPKAK 369
ELP NSR+HI+EEFN ++ LIATD+ + DQ + + +KS K K
Sbjct: 299 ELPVNSRIHIVEEFNKNVYKLLIATDENSNNRSEMDVDSDQEQDEAQENDKKSTKSNKQN 358
Query: 370 LDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSP------- 422
E+GV RG+DFKNV V+NF++P ++ Y+HRIGRT RA +G ++S V P
Sbjct: 359 NGKEYGVSRGVDFKNVACVLNFDLPTSSKAYIHRIGRTARAGKSGMALSFVIPLKEVGKH 418
Query: 423 -----DEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVR 477
K E+I + ++ I P+ VE RYRAED ++VT ++++
Sbjct: 419 KTACLKTAKKDEKILRRIVKQQSRSGFDIKPYQ-FDMKQVEGFRYRAEDAFRAVTSVSIK 477
Query: 478 ESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQE 537
E+R ++L+ EIL S+KLK FE NP+DL L+HDK+L +HL+ VP+YLL +
Sbjct: 478 EARYKELKEEILTSDKLKRFFEENPQDLSALRHDKELHPAKVQAHLKRVPEYLLPESARN 537
Query: 538 ACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSF 573
A + +R+ +K DPLKS
Sbjct: 538 APSKIGFIPFHKTKGKPRKRKASSKKV---DPLKSL 570
>gi|367016957|ref|XP_003682977.1| hypothetical protein TDEL_0G03990 [Torulaspora delbrueckii]
gi|359750640|emb|CCE93766.1| hypothetical protein TDEL_0G03990 [Torulaspora delbrueckii]
Length = 588
Score = 368 bits (945), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 235/589 (39%), Positives = 338/589 (57%), Gaps = 46/589 (7%)
Query: 19 EAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGK-DVVARAKTGSGKT 77
+A ++ SFE L LD RL+ A+++ G PTLIQ +IPL L+ K D++A+A TGSGKT
Sbjct: 11 DAYLDDSTSFEALQLDPRLLQAIHRNGYHHPTLIQSHAIPLALQQKRDIIAKAATGSGKT 70
Query: 78 FAYLLPLLHRLFN----ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLK 133
AYL+P++ + + ESS +VLVPT+EL QV + + L C V K
Sbjct: 71 LAYLIPVIQTILDCKKDESSELGSNKTLGIVLVPTKELASQVSTVLEQLTLYCSKDV--K 128
Query: 134 VVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADL 192
+ +S M + L + L P+I+IATP + L T + + S ++LK LV+DE DL
Sbjct: 129 NLNASSDMSHAVLSSLLLESPEIIIATPAKLLSLLETNI---NAISLENLKFLVIDEVDL 185
Query: 193 LLSYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD 250
+LS+GY+DDL +S +P + Q LMSAT + D+ LKK +P IL + KD
Sbjct: 186 VLSFGYQDDLTKISEFLPLQKSLQTFLMSATLNDDIQDLKKRFCRSPAILKFNDDQITKD 245
Query: 251 EVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 310
+ + Q+++ +E DK L + KL L++ K+LIF N ID +RLKL LE+FGIKS
Sbjct: 246 D---SKLLQYYVKTTEFDKFLLCYVIFKLGLIKGKSLIFVNNIDRGYRLKLVLEQFGIKS 302
Query: 311 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ--------TKEKDQSDEGGHVDSRKS 362
ILN+ELP NSR HI+++FN ++ LIATDDT+ KE + S++ VD + +
Sbjct: 303 CILNSELPANSRQHIVDQFNKNVYQLLIATDDTEYIREEDEEEKESEVSEDSKEVDGKNN 362
Query: 363 KKHPK---AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSL 419
K K K D E+GV RG+DFKNV V+NF++P A YVHR+GRT RA +G ++S
Sbjct: 363 NKKIKRLQVKKDKEYGVSRGVDFKNVACVLNFDLPTTAKSYVHRVGRTARAGKSGTAISF 422
Query: 420 VSPDEMKIFEEIKSFVGDDENEDSNIIA--------------PFPLLAQNAVESLRYRAE 465
V P +K F + K + D I+ P+ VE RYR E
Sbjct: 423 VVP--LKEFGKHKPSMCPTAKRDEKILTRIIKQQSKLGLELQPYS-FDNKQVEGFRYRLE 479
Query: 466 DVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRD 525
D ++VT++AVRE+R ++L+ E+L S+KLK HFE NP++L L+HDK+L HL+
Sbjct: 480 DGFRAVTQVAVREARIKELKQELLASDKLKRHFEENPQELQSLRHDKELHPARVQQHLKR 539
Query: 526 VPDYLL-DAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSF 573
VP+YLL D+ Q K + K + + +R KSDPLK+F
Sbjct: 540 VPEYLLPDSVKQGKSKKIGFVPFHKPKKAHKKGKVQKRN-GKSDPLKNF 587
>gi|403278477|ref|XP_003930831.1| PREDICTED: probable ATP-dependent RNA helicase DDX56 isoform 1
[Saimiri boliviensis boliviensis]
Length = 547
Score = 368 bits (945), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 224/555 (40%), Positives = 319/555 (57%), Gaps = 31/555 (5%)
Query: 24 EEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLP 83
E FE +GLD RL+ A+ G +PTLIQ+ +IPL LEGKD++ARA+TGSGKT AY +P
Sbjct: 5 EAVGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIP 64
Query: 84 LLHRLFNE--SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSM 141
+L L + + P + A LVLVPT+EL +Q + L C V +V +++
Sbjct: 65 MLQLLLHRKATGPVVEQAVRGLVLVPTKELARQAQCMIQQLATYCARDV--RVANVSAVE 122
Query: 142 PASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDD 201
++ RA L PD+++ TP + LS S DSL++LV+DEADLL S+G+E++
Sbjct: 123 DSASQRAVLMEKPDVIVGTPS---RILSHLQQDSLKLRDSLELLVMDEADLLFSFGFEEE 179
Query: 202 LKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW 261
LK+L +PR Q LMSAT + DV LK+L+LHNP L L E P +QQF
Sbjct: 180 LKSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE----SQLPGPDQLQQFQ 235
Query: 262 ISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 320
+ C +E DK L + TLLKL L++ K+L+F NT++ ++RL+LFLE+F I + +LN ELP
Sbjct: 236 VVCETEEDKFLLLYTLLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPLR 295
Query: 321 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA--KLDSEFGVVR 378
SR HI+ +FN G +D +IATD G V ++ + PK D E GV R
Sbjct: 296 SRCHIISQFNQGFYDCVIATDAEVL--------GAPVKGKRRGRGPKGDKASDPEAGVAR 347
Query: 379 GIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD 438
GIDF +V V+NF++P Y+HR GRT RA N G ++ V P E +I+ + +
Sbjct: 348 GIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGVVLTFVLPTEQSHLGKIEELLSGE 407
Query: 439 ENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHF 498
I+ P+ + +E RYR D +SVTK A+RE+R ++++ E+L+SEKLK +F
Sbjct: 408 NR--GPILLPYQFQMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYF 464
Query: 499 EVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQ 558
E NP+DL LL+HD L HL VPDYL+ + L R K S
Sbjct: 465 EDNPRDLQLLRHDLPLHPAVVKPHLGHVPDYLVPPALR------GLVRPHKKRKKLSSSC 518
Query: 559 GPRRKFRKSDPLKSF 573
++ + +PL SF
Sbjct: 519 RKAKRVKSQNPLHSF 533
>gi|48146543|emb|CAG33494.1| DDX56 [Homo sapiens]
Length = 547
Score = 368 bits (944), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 230/560 (41%), Positives = 323/560 (57%), Gaps = 35/560 (6%)
Query: 21 EAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAY 80
E E FE +GLD RL+ A+ G + TLIQ+ +IPL LEGKD++ARA+TGSGKT AY
Sbjct: 2 EDSEALGFEHMGLDPRLLQAVTDLGWSRSTLIQEKAIPLALEGKDLLARARTGSGKTAAY 61
Query: 81 LLPLLHRLFNE--SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLT 138
+P+L L + + P + A LVLVPT+EL +Q S + L C V +V ++
Sbjct: 62 AIPMLQLLLHRKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCARDV--RVANVS 119
Query: 139 SSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGY 198
++ + RA L PD+V+ TP + LS S DSL++LV+DEADLL S+G+
Sbjct: 120 AAEDSVSQRAVLMEKPDVVVGTPS---RILSHLQQDSLKLRDSLELLVVDEADLLFSFGF 176
Query: 199 EDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ 258
E++LK+L +PR Q LMSAT + DV LK+LILHNP L L E P +Q
Sbjct: 177 EEELKSLLCHLPRIYQAFLMSATFNEDVQALKELILHNPVTLKLQE----SQLPGPDQLQ 232
Query: 259 QFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAEL 317
QF + C +E DK L + LLKL L++ K+L+F NT++ ++RL+LFLE+F I + +LN EL
Sbjct: 233 QFQVVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGEL 292
Query: 318 PQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA--KLDSEFG 375
P SR HI+ +FN G +D +IATD G V ++ + PK D E G
Sbjct: 293 PLRSRCHIISQFNQGFYDCVIATDAEVL--------GAPVKGKRRGRGPKGDKASDPEAG 344
Query: 376 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
V RGIDF +V V+NF++P Y+HR GRT RA N G ++ V P E +I+ +
Sbjct: 345 VARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQFHLGKIEELL 404
Query: 436 GDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLK 495
+ I+ P+ + +E RYR D +SVTK A+RE+R ++++ E+L+SEKLK
Sbjct: 405 SGENR--GPILLPYQFRMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLK 461
Query: 496 AHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNK--N 553
+FE NP+DL LL+HD L HL VPDYL+ + L R K +
Sbjct: 462 TYFEDNPRDLQLLRHDLPLHPAVVKPHLGHVPDYLVPPALR------GLVRPHKKRKKLS 515
Query: 554 SSRRQGPRRKFRKSDPLKSF 573
SS R+ R K +PL+SF
Sbjct: 516 SSYRKAKRAK--SQNPLRSF 533
>gi|397467114|ref|XP_003846141.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
DDX56 [Pan paniscus]
Length = 547
Score = 367 bits (943), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 230/560 (41%), Positives = 323/560 (57%), Gaps = 35/560 (6%)
Query: 21 EAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAY 80
E E FE +GLD RL+ A+ G +PTLIQ+ +IPL LEGKD++ARA+TGSGKT AY
Sbjct: 2 EDSEALGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAY 61
Query: 81 LLPLLHRLFNE--SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLT 138
+P+L L + + P + A LVLVPT+EL +Q S + L C V +V ++
Sbjct: 62 AIPMLQLLLHRKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCARDV--RVANVS 119
Query: 139 SSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGY 198
++ + RA L PD+V+ TP + LS S DSL++LV+DEADL S+G+
Sbjct: 120 AAEDSVSQRAVLMEKPDVVVGTPS---RILSHLQQDSLKLRDSLELLVVDEADLXFSFGF 176
Query: 199 EDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ 258
E++LK+L +PR Q LMSAT + DV LK+LILHNP L L E P +Q
Sbjct: 177 EEELKSLLCHLPRIYQAFLMSATFNEDVQALKELILHNPVTLKLQE----SQLPGPDQLQ 232
Query: 259 QFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAEL 317
QF + C +E DK L + LLKL L++ K+L+F NT++ ++RL+LFLE+F I + +LN EL
Sbjct: 233 QFQVICETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGEL 292
Query: 318 PQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA--KLDSEFG 375
P SR HI+ +FN G +D +IATD G V ++ + PK D E G
Sbjct: 293 PLRSRCHIISQFNQGFYDCVIATDAEVL--------GAPVKGKRRGRGPKGDKASDLEAG 344
Query: 376 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
V RGIDF +V V+NF++P Y+HR GRT RA N G ++ V P E +I+ +
Sbjct: 345 VARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQFHLGKIEELL 404
Query: 436 GDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLK 495
+ I+ P+ + +E RYR D +SVTK A+RE+R ++++ E+L+SEKLK
Sbjct: 405 SGENR--GPILLPYQFRMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLK 461
Query: 496 AHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNK--N 553
+FE NP+DL LL+HD L HL VPDYL+ + L R K +
Sbjct: 462 TYFEDNPRDLQLLRHDLPLHPAVVKPHLGHVPDYLVPPALR------GLVRPHKKRKKLS 515
Query: 554 SSRRQGPRRKFRKSDPLKSF 573
SS R+ R K +PL+SF
Sbjct: 516 SSCRKAKRAK--SQNPLRSF 533
>gi|417402574|gb|JAA48132.1| Putative atp-dependent rna helicase [Desmodus rotundus]
Length = 545
Score = 367 bits (943), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 215/513 (41%), Positives = 307/513 (59%), Gaps = 25/513 (4%)
Query: 24 EEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLP 83
E+ FE +GLD RL+ A+ G +PTLIQ+ +IPL LEGKD++ARA+TGSGKT AY +P
Sbjct: 5 EQLGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIP 64
Query: 84 LLHRLFNE--SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSM 141
+L L + + P + A LVLVPT+EL +Q S + L C + +V ++++
Sbjct: 65 MLQLLLHRKATGPAVEQAVRGLVLVPTKELARQAQSMIQQLAAYCARDI--RVANVSAAE 122
Query: 142 PASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDD 201
++ RA L PD+V+ TP + L+ S DSL++LV+DEADLL S+G+E++
Sbjct: 123 DSASQRAVLMEKPDVVVGTPS---RILNHLQQDSLKLRDSLELLVMDEADLLFSFGFEEE 179
Query: 202 LKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW 261
LK+L +PR Q LMSAT + DV LK+L+LHNP L L E P+ +QQF
Sbjct: 180 LKSLLCHLPRIYQAFLMSATFNEDVQTLKELVLHNPVTLKLQE----SQLPGPEQLQQFQ 235
Query: 262 ISCS-ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 320
+ C E DK L + LLKL L++ K+L+F NT++ ++RL+LFLE+F I + +LN ELP
Sbjct: 236 VVCDMEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPACVLNGELPLR 295
Query: 321 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL--DSEFGVVR 378
SR HI+ +FN G +D +IATD G V + PK D E GV R
Sbjct: 296 SRCHIISQFNQGFYDCVIATDAEVL--------GAPVKGKHRGTGPKGDRASDPEAGVAR 347
Query: 379 GIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD 438
GIDF +V V+NF++P + Y+HR GRT RA N G ++ V P E +I+ + D
Sbjct: 348 GIDFHHVSAVLNFDLPPSPEAYIHRAGRTARANNPGIVLTFVLPTEQSQLGKIEELL--D 405
Query: 439 ENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHF 498
+ + P+ + +E RYR D +SVTK A+RE+R ++++ E+L+SEKLK +F
Sbjct: 406 GETGAPALLPYQFHMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYF 464
Query: 499 EVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 531
E NP+DL LL+HD L HL VPDYL+
Sbjct: 465 EDNPRDLQLLRHDLPLHPAVVKPHLGHVPDYLV 497
>gi|328778265|ref|XP_391920.3| PREDICTED: probable ATP-dependent RNA helicase DDX56 isoform 1
[Apis mellifera]
Length = 552
Score = 367 bits (942), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 218/571 (38%), Positives = 335/571 (58%), Gaps = 31/571 (5%)
Query: 16 EEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSG 75
E +E + KSF EL LD R++ A+ K G +PTLIQ+ +IPL++EGKD++ RA+TGSG
Sbjct: 7 EADEDNETKAKSFYELELDDRILKAVAKLGWLEPTLIQEKTIPLMIEGKDILIRARTGSG 66
Query: 76 KTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVV 135
KT A+ +PL+ ++ + + + L++ P++ELC+Q++ +++L C +V K +
Sbjct: 67 KTAAFTIPLIQKILSNKQTRKQQEIKGLIIAPSKELCKQIHDVIISLTIKCSREV--KAI 124
Query: 136 QLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLS 195
++ + S + LA PDIV++TP + + L ++ K SL+ L++DEADL+ S
Sbjct: 125 DISPQVDLSAQKLLLAEKPDIVVSTPSKLLQHLKAKNMKLKQ---SLETLIIDEADLIFS 181
Query: 196 YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIP- 254
+GYE+++K + +P Q +L SAT S DV LKKL+L +P IL L E + P
Sbjct: 182 FGYENEIKDILNYLPILYQAVLASATLSEDVITLKKLVLRHPVILKLEEAP-----LAPL 236
Query: 255 KNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILN 314
+ + ++ E DK + LLKL L++ K +IF NT+D ++LKLFLE+FGI + +LN
Sbjct: 237 SQLSHYSLAAEENDKAAILCALLKLRLIRGKTIIFVNTVDRCYKLKLFLEQFGIATCVLN 296
Query: 315 AELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEF 374
+ELP SR + +FN+G +D +IA+D ++S E H+ K K K D EF
Sbjct: 297 SELPAVSRCRAVTQFNSGTYDIIIASD-------EKSLEEPHIAKVKRGKRKK---DKEF 346
Query: 375 GVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 434
G+ RGIDF+ V V NF+ P + Y+HR GRT R N G +SLVS E I E+++
Sbjct: 347 GIARGIDFQFVSNVFNFDFPPDINSYIHRAGRTARGKNDGTVLSLVSIRERPILEDVEVE 406
Query: 435 VGDDENEDSNI-IAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEK 493
+ N D + F L VE RYRA+D K+VT+IAVRE+R ++++ E+LN +K
Sbjct: 407 LKQCYNCDKLLKTYEFKL---EEVEGFRYRAKDAWKAVTRIAVREARLKEIKQEVLNCQK 463
Query: 494 LKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEAC----KMVKLARAAM 549
LK++FE NP+DL L+ DK L HL+DVPDY++ + K K R A
Sbjct: 464 LKSYFEDNPRDLQSLRQDKALHTVKLQPHLKDVPDYIIPPTLKRLVNTGKKKKKFNREAT 523
Query: 550 GNKNSSRRQGPRRKFRKSDPLKSFSAEPTKR 580
+K ++ + R R S+PL S + K+
Sbjct: 524 TSKPTATQSKYRA--RASNPLMSLQLQNLKK 552
>gi|255727326|ref|XP_002548589.1| hypothetical protein CTRG_02886 [Candida tropicalis MYA-3404]
gi|240134513|gb|EER34068.1| hypothetical protein CTRG_02886 [Candida tropicalis MYA-3404]
Length = 605
Score = 367 bits (942), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 219/588 (37%), Positives = 336/588 (57%), Gaps = 40/588 (6%)
Query: 9 SKEVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGK-DVV 67
+KE+ A +E+ +++ LD RL+ A+++ G PTLIQ ++IPL LE K D++
Sbjct: 33 TKEMSNTAASSAYLDEDTTWDSFNLDPRLLQAIDQLGFANPTLIQSSAIPLALEEKRDII 92
Query: 68 ARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCK 127
A+A TGSGKT AY +P+++ L + + ++VLVPTREL QV+ + L+
Sbjct: 93 AKASTGSGKTAAYSIPIVNNLLTDGDSE---GIKSIVLVPTRELSNQVFQFIEKLLSFSN 149
Query: 128 GQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVL 187
++ V+ L+S+ L + L PDI+I+TP + + L + ++K L +
Sbjct: 150 NKIN--VLNLSSNYSDQVLNSLLVNKPDIIISTPAKLIQILEKN--EKNVDLSTVKNLTI 205
Query: 188 DEADLLLSYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEV 245
DE DL+LS+GY DDLK L +P + Q LMSAT + D++ LKK P IL L +
Sbjct: 206 DEVDLVLSFGYMDDLKKLENYLPIKKNLQTFLMSATVNDDLEDLKKRYCTKPAILKLNDD 265
Query: 246 GDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEK 305
+++++ Q++ +E DK L + KL L++ K ++F N ID +RLKLFLE+
Sbjct: 266 AANQNKLV-----QYYAKTTEFDKFLLAYVIFKLNLIKGKTIVFVNNIDRGYRLKLFLEQ 320
Query: 306 FGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKH 365
FGI+ ILN+ELP NSRLHI+EEFN ++ LIATD+T E ++ + +D ++
Sbjct: 321 FGIRCCILNSELPINSRLHIVEEFNKNVYHLLIATDETN--ELNEEKDEDDIDEDQADGE 378
Query: 366 PKAKL--------DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASV 417
P AK D E+GV RG+DF+NV V+NF++P ++ Y+HRIGRT RA G ++
Sbjct: 379 PAAKKSKKSKFKQDKEYGVSRGVDFRNVACVLNFDLPTSSKAYIHRIGRTARAGKAGMAL 438
Query: 418 SLVSP------------DEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAE 465
S V P K E++ + ++++ I P+ N VE RYRA+
Sbjct: 439 SFVLPLSEFGKHKTATLSTAKKDEKVLRRIVKQQSKNGFEIKPYQ-FDMNQVEGFRYRAD 497
Query: 466 DVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRD 525
D ++VT+ ++RE+R ++L+NE++NSEKLK FE NP+DL L+HDK+L + L++
Sbjct: 498 DAFRAVTQTSIREARVKELKNELINSEKLKRFFEENPQDLASLRHDKELHPTRIQTQLKN 557
Query: 526 VPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSF 573
VP YLL + K + + R+G RK K DPLKSF
Sbjct: 558 VPQYLLPESARSDVKNIGFVPFHKNKVHKRNRKGKGRK--KVDPLKSF 603
>gi|170043535|ref|XP_001849439.1| ATP-dependent RNA helicase DBP9 [Culex quinquefasciatus]
gi|167866845|gb|EDS30228.1| ATP-dependent RNA helicase DBP9 [Culex quinquefasciatus]
Length = 551
Score = 367 bits (942), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 202/506 (39%), Positives = 314/506 (62%), Gaps = 13/506 (2%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
+F ++ LD R++ + K G PTLIQ+ +IPL+LEGKDV+ RA+TGSGKT A+ +P++
Sbjct: 11 NFHQMELDDRILKGIAKLGWLCPTLIQEKAIPLLLEGKDVLVRARTGSGKTAAFSIPIIQ 70
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
++ + +VL P+R+LC Q ++VM + + G++ ++ V L++ + + L
Sbjct: 71 QILTRKVEAKEQETTVIVLAPSRDLCLQT-AKVMEALTIKCGRL-VRCVDLSAKVDKAAL 128
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
+ LA PD+V++TP + L G L K DSLK L++DEADL+ S+G+E DLKA+
Sbjct: 129 KHMLAERPDVVVSTPAKLLAQLQEGTLNVK---DSLKTLIVDEADLMFSFGFESDLKAVL 185
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-VQQFWISCS 265
+P Q +L SAT DV +LKK+ILHNP IL L E E+ P + + F I
Sbjct: 186 DFMPSVHQSVLASATLEKDVLELKKIILHNPVILKLEE-----PEIAPASQLAHFHILAE 240
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
E DK + TL+KL+LV+ K++IF ++ID ++LKLFLE+F I+S +LN+ELP R H
Sbjct: 241 EVDKAAVLYTLVKLQLVKGKSIIFVDSIDRCYKLKLFLEQFSIRSCVLNSELPAKIRCHT 300
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
+ +FN GL+D ++A+D+ + ++ G + K+ K K +SE GV RGIDF+ V
Sbjct: 301 VSQFNQGLYDIIVASDELHVLDPAVKEKKGQNKKKMLKQIAKQK-ESEAGVARGIDFQFV 359
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNI 445
VINF+ P++ Y+HR GRT R NTG+ +S VS E + + ++ + + +
Sbjct: 360 SNVINFDFPKDINSYIHRAGRTARGNNTGSVLSFVSVAEKDMMDSVEDHLKSGYEQSETV 419
Query: 446 IAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDL 505
+ + + VE RYRA D ++VTKI++RE+R ++++ E+ NSEKLK+ FE NP+DL
Sbjct: 420 MKSYQFKMEE-VEPFRYRARDAWRAVTKISIREARIKEIKTEMFNSEKLKSFFEENPRDL 478
Query: 506 DLLKHDKDLSKKPPASHLRDVPDYLL 531
L+HD+ L HL DVP+Y++
Sbjct: 479 QALRHDRTLHTVKIQEHLGDVPEYIV 504
>gi|50424613|ref|XP_460896.1| DEHA2F12232p [Debaryomyces hansenii CBS767]
gi|74688654|sp|Q6BLM5.1|DBP9_DEBHA RecName: Full=ATP-dependent RNA helicase DBP9
gi|49656565|emb|CAG89246.1| DEHA2F12232p [Debaryomyces hansenii CBS767]
Length = 586
Score = 367 bits (942), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 211/579 (36%), Positives = 339/579 (58%), Gaps = 39/579 (6%)
Query: 22 AEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGK-DVVARAKTGSGKTFAY 80
++ ++E GLD RL+ A+++ G + PTLIQ ++IPL +E K D++A+A TGSGKT AY
Sbjct: 17 VDDSTTWESFGLDARLLQAIDQLGFENPTLIQSSAIPLAIEEKRDIIAKASTGSGKTAAY 76
Query: 81 LLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSS 140
+P++ L + S + ++ +++LVPTREL QV + L+ C +++L + ++S+
Sbjct: 77 SIPIIQNLLQDESTEREIK--SIILVPTRELSNQVSQFLEKLLIFCNSKIRL--INISSN 132
Query: 141 MPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYED 200
+ + + L P+I+++TP + + L V + ++K L +DE DL+LSYGY +
Sbjct: 133 LSDQVINSLLINKPEIIVSTPAKLIQILEKNVNSNLINLSTVKNLTIDEVDLVLSYGYLE 192
Query: 201 DLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ 258
DL+ L + +P + Q LMSAT + D++ +K P IL L + ++ N+
Sbjct: 193 DLQKLESYLPIKKNLQTFLMSATINDDLNDIKSKFCSRPAILKLND-----EDSNQNNLV 247
Query: 259 QFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELP 318
Q++ +E DK L + KL L++ K L+F N ID +RLKLFLE+FG++ ILN+ELP
Sbjct: 248 QYYAKTTEFDKFLLTYVIFKLNLIKGKTLVFVNNIDRGYRLKLFLEQFGVRCCILNSELP 307
Query: 319 QNSRLHILEEFNAGLFDYLIATDDTQ----------TKEKDQSDEGGHVDSRKSK--KHP 366
NSRL+I+E++N +++ LIATD+T E+ + ++ D + SK K P
Sbjct: 308 INSRLNIVEQYNKNVYNLLIATDETNDFTIQEDEKDEGEEIEENKNEENDGKTSKNTKKP 367
Query: 367 KAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSP---- 422
K D E+GV RG+DF+NV V+NF++P ++ Y+HR+GRT RA +G ++S V P
Sbjct: 368 NQKKDKEYGVSRGVDFRNVACVLNFDLPTSSKSYIHRVGRTARAGKSGMALSFVLPLNEF 427
Query: 423 --------DEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKI 474
K E++ + ++ + I P+ VE RYRAED ++VT+
Sbjct: 428 GKHKTASLSTAKKDEKVLRRIVRQQSNNGFEIKPYQ-FDMKQVEGFRYRAEDAFRAVTQS 486
Query: 475 AVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAK 534
AVRE+R ++L+NE++NS+KLK FE NP+DL L+HDK+L +HL+ VP+YLL
Sbjct: 487 AVREARIKELKNELVNSDKLKRFFEENPQDLASLRHDKELHPTRVQTHLKRVPEYLLPES 546
Query: 535 TQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSF 573
+ K + + +R++ P RK DPLKSF
Sbjct: 547 ARADHKKIGFVPFHKNKVHKNRKRKPSG--RKPDPLKSF 583
>gi|307199009|gb|EFN79733.1| Probable ATP-dependent RNA helicase DDX56 [Harpegnathos saltator]
Length = 547
Score = 367 bits (941), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 213/513 (41%), Positives = 316/513 (61%), Gaps = 29/513 (5%)
Query: 23 EEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLL 82
E+ K+F EL LD R++ A+ K G +PTLIQ+ +IPL+LEGKDV+ RA+TGSGKT A+ +
Sbjct: 9 EKTKNFHELELDDRILKAIAKLGWPEPTLIQEKAIPLLLEGKDVLIRARTGSGKTGAFAV 68
Query: 83 PLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMP 142
PL+ ++ + K ++++ P++ELC+Q+ ++ L C +V +VV ++ P
Sbjct: 69 PLIQKILVNKCTQEKQEIKSVIVTPSKELCKQIQEVIVNLTVKCSREV--RVVDIS---P 123
Query: 143 ASDLRAA---LAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE 199
+DL A L PDIV+ATPG + + L L K SL+ L++DEADL+ S+GYE
Sbjct: 124 QTDLNAQKPLLVEMPDIVVATPGRLLQHLKAKNLVLKR---SLETLIIDEADLIFSFGYE 180
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
DD+KA+ A +P Q +L SAT S DV LKKL+LHNP IL L E P +
Sbjct: 181 DDMKAVLAYLPTVYQAVLASATLSEDVQTLKKLVLHNPAILKLEEPPLAP----PTQLAH 236
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+ ++ E DK + LLKL L++ K++IF NT+D ++LKLFLE+FGI + +LN+ELP
Sbjct: 237 YTLAAEENDKAAILYALLKLHLIRGKSIIFVNTVDRCYKLKLFLEQFGIPTCVLNSELPA 296
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
SR + +FN+G +D +IA+D+ +E HV ++K K K D E GV RG
Sbjct: 297 TSRCRAVTQFNSGTYDVIIASDEKALEEP-------HVVNKKKG---KRKKDKESGVARG 346
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDE 439
IDF+ V +INF+ P + Y+HR GRT R N G ++S V+ E + E ++ +
Sbjct: 347 IDFQFVSNIINFDFPLDVDSYIHRAGRTARGKNQGTALSFVAIRERPLMENVEEQLKHTY 406
Query: 440 NEDSNI-IAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHF 498
N +S F L VE RYRA+D K+VT+IAVRE+R ++++ E++N +KLK++F
Sbjct: 407 NRNSLFKTYQFKL---EEVEGFRYRAKDAWKAVTRIAVREARLKEIKQEVMNCQKLKSYF 463
Query: 499 EVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 531
E NP+DL L+ DK L HL+DVP+Y++
Sbjct: 464 EDNPRDLQSLRQDKALHTVKLQPHLKDVPEYIV 496
>gi|296209197|ref|XP_002751433.1| PREDICTED: probable ATP-dependent RNA helicase DDX56 [Callithrix
jacchus]
Length = 547
Score = 367 bits (941), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 224/555 (40%), Positives = 319/555 (57%), Gaps = 31/555 (5%)
Query: 24 EEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLP 83
E FE +GLD RL+ A+ G +PTLIQ+ +IPL LEGKD++ARA+TGSGKT AY +P
Sbjct: 5 EALGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIP 64
Query: 84 LLHRLFNE--SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSM 141
+L L + + P + A LVLVPT+EL +Q + L C V +V ++++
Sbjct: 65 MLQLLLHRKATGPVVEQAVRGLVLVPTKELARQAQCMIQQLATYCARDV--RVANVSAAE 122
Query: 142 PASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDD 201
+ RA L PD+++ TP + LS S DSL++LV+DEADLL S+G+E++
Sbjct: 123 DLASQRAVLMEKPDVIVGTPS---RILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEE 179
Query: 202 LKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW 261
LK+L +PR Q LMSAT + DV LK+L+LHNP L L E P +QQF
Sbjct: 180 LKSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE----SQLPGPDQLQQFQ 235
Query: 262 ISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 320
+ C +E DK L + TLLKL L++ K+L+F NT++ ++RL+LFLE+F I + +LN ELP
Sbjct: 236 VVCETEEDKFLLLYTLLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPLR 295
Query: 321 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA--KLDSEFGVVR 378
SR HI+ +FN G +D +IATD G V ++ + PK D E GV R
Sbjct: 296 SRCHIISQFNQGFYDCVIATDAEVL--------GAPVKGKRRGRGPKGDKASDLEAGVAR 347
Query: 379 GIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD 438
GIDF +V V+NF++P Y+HR GRT RA N G ++ V P E +I+ + +
Sbjct: 348 GIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSHLGKIEELLSGE 407
Query: 439 ENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHF 498
I+ P+ + +E RYR D +SVTK A+RE+R ++++ E+L+SEKLK +F
Sbjct: 408 NR--GPILLPYQFRMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYF 464
Query: 499 EVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQ 558
E NP+DL LL+HD L HL VPDYL+ + L R K S
Sbjct: 465 EDNPRDLQLLRHDLPLHPAVVKPHLGHVPDYLVPPALR------GLVRPHKKRKKLSSSC 518
Query: 559 GPRRKFRKSDPLKSF 573
++ + +PL SF
Sbjct: 519 RKAKRVKSQNPLHSF 533
>gi|3850123|emb|CAA21924.1| dead box helicase [Candida albicans]
Length = 574
Score = 366 bits (940), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 227/576 (39%), Positives = 334/576 (57%), Gaps = 39/576 (6%)
Query: 23 EEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGK-DVVARAKTGSGKTFAYL 81
++E +++ LD RL+ A+++ G PTLIQ ++IPL LE K D++A+A TGSGKT AY
Sbjct: 11 DDETTWDSFNLDPRLLQAIDQLGFSNPTLIQSSAIPLALEEKRDIIAKASTGSGKTAAYC 70
Query: 82 LPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSM 141
+P+++ L + S + +++LVPTREL QV+ V L+ ++ V+ L+SS
Sbjct: 71 IPIVNNLLTDDSSQ---GIKSIILVPTRELSNQVFQFVEKLLTFSTNKIN--VLNLSSSY 125
Query: 142 PASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDD 201
L + L P+I+I+TP + + L + ++K L +DE DL+LS+GY DD
Sbjct: 126 SDQVLNSLLVNKPEIIISTPAKLIQILEKN--EKNIDLSTVKNLTIDEVDLVLSFGYLDD 183
Query: 202 LKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
LK L + +P + Q LMSAT + D+D LK+ P IL L E D N+ Q
Sbjct: 184 LKKLESYLPVKKNLQTFLMSATVNDDLDDLKQRYCTKPAILKLNE-----DSANQNNLVQ 238
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
++ +E DK L + KL L++ K + F N ID +RLKLFLE+FGI+ ILN+ELP
Sbjct: 239 YYAKTTEFDKFLLAYVIFKLNLIKGKTIAFVNNIDRGYRLKLFLEQFGIRCCILNSELPI 298
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSD-EGGHVDSR---------KSKKHPKAK 369
NSRLHI+EEFN ++ LIATD+T ++Q D E G D++ K K K K
Sbjct: 299 NSRLHIVEEFNKNVYHLLIATDETNELNEEQDDNEDGDEDTKDKGNAETKPKKSKKSKFK 358
Query: 370 LDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSP------- 422
D E+GV RG+DF+NV V+NF++P ++ Y+HRIGRT RA G ++S V P
Sbjct: 359 QDKEYGVSRGVDFRNVACVLNFDLPTSSKAYIHRIGRTARAGKAGMALSFVLPLSEFGKH 418
Query: 423 -----DEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVR 477
K E++ + ++++ I P+ N VE RYRA+D ++VT+ AVR
Sbjct: 419 KTASLASAKKDEKVLGRIVKQQSKNGFEIKPYQ-FDMNQVEGFRYRADDAFRAVTQTAVR 477
Query: 478 ESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQE 537
E+R ++L+NE++NSEKLK FE NP+DL L+HDK+L S L++VP YLL ++
Sbjct: 478 EARVKELKNELINSEKLKRFFEENPQDLASLRHDKELHPARIQSQLKNVPQYLLPESARQ 537
Query: 538 ACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSF 573
K + NK R+G + +K DPLKSF
Sbjct: 538 DVKNIGFV-PFHKNKIHKHRKGKGKGRKKVDPLKSF 572
>gi|448099184|ref|XP_004199083.1| Piso0_002489 [Millerozyma farinosa CBS 7064]
gi|359380505|emb|CCE82746.1| Piso0_002489 [Millerozyma farinosa CBS 7064]
Length = 572
Score = 366 bits (939), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 216/576 (37%), Positives = 324/576 (56%), Gaps = 34/576 (5%)
Query: 19 EAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGK-DVVARAKTGSGKT 77
E+ + ++ LD RL A++ G PT +Q ++IPL LE K D++A+A TGSGKT
Sbjct: 8 ESYLNTDSTWSLFNLDPRLFQAIDHVGFSNPTYVQSSAIPLALEEKRDIIAKASTGSGKT 67
Query: 78 FAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQL 137
AY +P+L+ LF + + + +++LVPTREL QV + L+ +V V+ L
Sbjct: 68 AAYCIPILNNLFTTETEEKSIK--SVILVPTRELSSQVTKFLEQLLLFNSDKVS--VLNL 123
Query: 138 TSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYG 197
+S++ L + L PDI+I+TP + + L V + ++ L +DE DL++SYG
Sbjct: 124 SSNISEQVLNSLLINKPDIIISTPAKLLQFLEKNVNSNLINLSKVQSLTIDEVDLIISYG 183
Query: 198 YEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK 255
Y DDL+ L A +P + Q LMSAT + +V++LK P IL L + DE
Sbjct: 184 YSDDLQKLGAYLPAKKNLQTYLMSATINDEVNELKSRFCTKPAILKLDD-----DEATQN 238
Query: 256 NVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNA 315
N+ Q++ +E DK L + KL L++ K +IF N ID +RLKLFLE+FGI+S ILN+
Sbjct: 239 NLVQYYAKTTEFDKFLLAYVIFKLNLIKGKTIIFVNNIDRGYRLKLFLEQFGIRSCILNS 298
Query: 316 ELPQNSRLHILEEFNAGLFDYLIATDDTQTK------EKDQSDEGGHVDSRKSKKHPKAK 369
ELP NSR+HI+EEFN ++ LIATD+ + DQ + + +KS K K
Sbjct: 299 ELPVNSRIHIVEEFNKNVYKLLIATDENSNNRLEMDVDSDQEQDDSQENDKKSTKGNKQN 358
Query: 370 LDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSP------- 422
E+GV RG+DFKNV V+NF++P ++ Y+HRIGRT RA +G ++S V P
Sbjct: 359 NGREYGVSRGVDFKNVACVLNFDLPTSSKAYIHRIGRTARAGKSGMALSFVIPLKEVGKH 418
Query: 423 -----DEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVR 477
K E+I + ++ I P+ VE RYRAED ++VT ++++
Sbjct: 419 KTACLKTAKKDEKILRRIVKQQSRSGFDIKPYQ-FDMKQVEGFRYRAEDAFRAVTSVSIK 477
Query: 478 ESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQE 537
E+R ++L+ EIL S+KLK FE NP+DL L+HDK+L +HL+ VP+YLL ++
Sbjct: 478 EARYKELKEEILTSDKLKRFFEENPQDLSALRHDKELHPAKVQAHLKRVPEYLLPESARD 537
Query: 538 ACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSF 573
A + +K R + + +K DPLKS
Sbjct: 538 APSKIGFVPF---HKTKGRPRKRKAASKKVDPLKSL 570
>gi|344293830|ref|XP_003418623.1| PREDICTED: probable ATP-dependent RNA helicase DDX56 [Loxodonta
africana]
Length = 545
Score = 365 bits (938), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 224/561 (39%), Positives = 322/561 (57%), Gaps = 39/561 (6%)
Query: 22 AEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYL 81
A E FE +GLD RL+ A+ G +PTLIQ+ +IPL LEGKD++ARA+TGSGKT AY
Sbjct: 2 ANEVLGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYA 61
Query: 82 LPLLHRLFNE--SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTS 139
LP+L L + + P + A LVLVPT+EL +Q S + L C + +V +++
Sbjct: 62 LPMLQLLLHRKATGPVVEQAVRVLVLVPTKELAKQAQSMIQQLATYCARDI--RVADVSA 119
Query: 140 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE 199
+ ++ RA L PD+V+ TP + LS + DSL++LV+DEADLL S+G+E
Sbjct: 120 AEHSASQRAVLIEKPDVVVGTPS---RILSHLQQDNLKLHDSLELLVMDEADLLFSFGFE 176
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
++LK+L +PR Q LMSAT + DV LK+L+LHNP L L E P +QQ
Sbjct: 177 EELKSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE----SQLPGPDQLQQ 232
Query: 260 FWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELP 318
F + C +E DK L + LLKL L++ K+L+F NT++ ++RL+LFLE+F I + +LN ELP
Sbjct: 233 FQVVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPACVLNGELP 292
Query: 319 QNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVR 378
SR HI+ +FN G +D +IATD + G + K +A D E GV R
Sbjct: 293 LRSRCHIISQFNQGFYDCVIATDAEVLGAPVKGKHRG-----RGAKGDRAS-DPEAGVAR 346
Query: 379 GIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD 438
GIDF +V V+NF++P Y+HR GRT RA N G ++ V P E +I+ + +
Sbjct: 347 GIDFHHVSAVLNFDLPPTPEAYIHRAGRTARASNPGVVLTFVLPAEQAHLGKIEELLSGE 406
Query: 439 ENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHF 498
++ P+ + +E RYR D +SVTK A+RE+R ++++ E+L SEKLK +F
Sbjct: 407 NG--VPVLLPYQFRMEE-IEGFRYRCRDAMRSVTKQAIREARLKEVKEELLRSEKLKTYF 463
Query: 499 EVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQ 558
E NP+DL LL+HD L HL +VPDYL+ + K +R+
Sbjct: 464 EDNPRDLQLLRHDLPLHPAVVKPHLGNVPDYLVPPTLRGVVHPHK------------KRK 511
Query: 559 GPRRKFRK------SDPLKSF 573
P +RK +PL+SF
Sbjct: 512 KPPSSYRKVKKGKTQNPLRSF 532
>gi|410074969|ref|XP_003955067.1| hypothetical protein KAFR_0A04960 [Kazachstania africana CBS 2517]
gi|372461649|emb|CCF55932.1| hypothetical protein KAFR_0A04960 [Kazachstania africana CBS 2517]
Length = 591
Score = 365 bits (937), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 230/599 (38%), Positives = 344/599 (57%), Gaps = 51/599 (8%)
Query: 13 KQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGK-DVVARAK 71
K A +A +E +FE LD RL+ A+ G PTLIQ IPL L+ K DV+A+A
Sbjct: 5 KNALASDAYIDESVTFESFQLDPRLLQAVKGSGFHHPTLIQSHGIPLALQQKRDVIAKAA 64
Query: 72 TGSGKTFAYLLPLLHRLFN-----ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELC 126
TGSGKT +YL+P++ + + S ++ ++LVPTREL QQV + + +I C
Sbjct: 65 TGSGKTLSYLIPVIQTILDYKGSVASDGVNESKTLGIILVPTRELAQQVTNVIEKMILYC 124
Query: 127 KGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILV 186
++ + + ++ M + L + L P+IV+ATP + L T + S SD LK LV
Sbjct: 125 TKEI--RSLNVSGDMSNAVLNSLLLENPEIVVATPAKLMSLLETQT-NAISLSD-LKFLV 180
Query: 187 LDEADLLLSYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTL-- 242
+DE DL+L++GY++DL ++ +P + Q LMSAT + D+ +LK+ P IL
Sbjct: 181 IDEVDLVLTFGYQEDLNKIAEYLPLKKNLQTFLMSATLNDDIQELKQKFCRAPAILKFND 240
Query: 243 PEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLF 302
E+ K ++I Q+++ +E DK L + KL L++ K+L+F N ID +RLKL
Sbjct: 241 DEINKDKTKLI-----QYYVKTNEFDKFLLCYVIFKLGLIKGKSLVFVNDIDRGYRLKLV 295
Query: 303 LEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ-TKEKDQSDEGGHVDSRK 361
LE+FGIKS ILN+ELP NSR HI+++FN ++ LIATDDT+ KE+D+ E ++
Sbjct: 296 LEQFGIKSCILNSELPANSRQHIVDQFNKNVYHLLIATDDTEYIKEEDEGIEENRLEDSV 355
Query: 362 SKK---------HPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYN 412
+++ ++K D E+GV RG+DFKNV V+NF++P + YVHRIGRT RA
Sbjct: 356 AEETNGGSQKKKQVQSKKDKEYGVSRGVDFKNVACVLNFDLPTTSKSYVHRIGRTARAGK 415
Query: 413 TGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNA---------------V 457
+G ++S V P +K F + K D I + ++ Q A +
Sbjct: 416 SGTAISFVVP--LKDFGKHKPSTCSTAKHDEKIFS--RIVKQQAKLGLELLPYSFDPKQI 471
Query: 458 ESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKK 517
E RYR ED ++VT++AVRE+R ++L+ E+L SEKLK HFE NPK+L L+HDK+L
Sbjct: 472 EGFRYRMEDGFRAVTQVAVREARIKELKEELLASEKLKRHFEENPKELQSLRHDKELHPM 531
Query: 518 PPASHLRDVPDYLL-DAKTQEACKMVKLARAAMGNKNSSRRQG--PRRKFRKSDPLKSF 573
HL+ VP+YLL +A + + K V K ++G +R+ KSDPLK+F
Sbjct: 532 RIQQHLKRVPEYLLPEAARKSSGKKVGFVPFHNPKKGRPHKKGKVSKRRNAKSDPLKNF 590
>gi|367005897|ref|XP_003687680.1| hypothetical protein TPHA_0K01120 [Tetrapisispora phaffii CBS 4417]
gi|357525985|emb|CCE65246.1| hypothetical protein TPHA_0K01120 [Tetrapisispora phaffii CBS 4417]
Length = 604
Score = 365 bits (936), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 226/605 (37%), Positives = 341/605 (56%), Gaps = 61/605 (10%)
Query: 19 EAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLIL-EGKDVVARAKTGSGKT 77
+A ++ +F+ + LD RL+ A+ + G + PTLIQ +IPL L E +D++A+A TGSGKT
Sbjct: 10 DAYIDDSVTFDSMKLDPRLLQAIKRNGYKNPTLIQATAIPLALQEKRDIIAKASTGSGKT 69
Query: 78 FAYLLPLLHRLFNESSPK------SKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQ 131
AYL+P++ + + K + A ++LVPTREL QQV + +I C +
Sbjct: 70 LAYLIPVIQTILDYQQNKGNDVDSNSSATLGIILVPTRELAQQVTEVLDKMILYCSKDI- 128
Query: 132 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEA 190
+ + + + + L + L P+IV++TP + L T V S S D LK LV+DE
Sbjct: 129 -RSLNIAGDISPAVLTSLLLEKPEIVVSTPSRLLGLLETNV---DSLSLDDLKFLVIDEV 184
Query: 191 DLLLSYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDV 248
DL+L++GY++DL +S +P + Q LMSAT + D+ +LKK +P I+ +
Sbjct: 185 DLVLTFGYKEDLTKISQFLPIKKNLQTFLMSATLNDDIQELKKDFCRSPAIIKFNDDEIT 244
Query: 249 KDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGI 308
KD+ + Q+++ SE DK L + KL L++ K LIF N ID +RLKL LE+FGI
Sbjct: 245 KDQT---KLIQYYVKTSEFDKFLLCYVIFKLGLIKGKTLIFVNNIDRGYRLKLVLEQFGI 301
Query: 309 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ-TKEKDQSDEGGHVDSRKS----- 362
K+ ILN+ELP NSR HI+++FN ++ LIATDDT+ KE+D+ +E +++K
Sbjct: 302 KACILNSELPANSRHHIVDQFNKNVYRLLIATDDTEYIKEEDEQEEIQVDETKKDSSEET 361
Query: 363 -----------------KKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIG 405
KK + D E+GV RG+DF+NV V+NF++P A YVHR+G
Sbjct: 362 TENKEEEPNTSDNKNNKKKTITIQKDKEYGVSRGVDFQNVACVLNFDLPTTAKSYVHRVG 421
Query: 406 RTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA--------------PFPL 451
RT RA +G ++S V P +K + K + D I++ P+
Sbjct: 422 RTARAGKSGTAISFVVP--LKEVGKHKPSMSQTSKRDEKILSRIMKQQGKLGLELQPYSF 479
Query: 452 LAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHD 511
++ VE RYR ED ++VT++A+RE+R ++L+ E+L SEKLK HFE NP++L L+HD
Sbjct: 480 DSKQ-VEGFRYRLEDGFRAVTQVAIREARIKELKEELLASEKLKRHFEENPQELKSLRHD 538
Query: 512 KDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSR-RQGPRRKFR--KSD 568
K+L HL+ VP+YLL ++ K V KN R +G + R KSD
Sbjct: 539 KELYPSRIQQHLKRVPEYLLPEAARKGDKKVGFVPFHNPKKNRHRVSKGKKNNKRGSKSD 598
Query: 569 PLKSF 573
PLK+F
Sbjct: 599 PLKNF 603
>gi|157106028|ref|XP_001649134.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
gi|108879960|gb|EAT44185.1| AAEL004445-PA [Aedes aegypti]
Length = 548
Score = 365 bits (936), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 203/506 (40%), Positives = 309/506 (61%), Gaps = 14/506 (2%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
+F ++ LD R++ + K G PTLIQ+ +IPL+LEGKDV+ RA+TGSGKT A+ +P++
Sbjct: 11 NFHQMELDDRILKGIAKLGWLCPTLIQEKAIPLLLEGKDVLVRARTGSGKTAAFSIPVIQ 70
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
++ N + ++L P+++LC Q+ + L C G++ ++ V L++ + L
Sbjct: 71 KILNYKQDAKEQQTTVVILAPSKDLCHQIAKVIEDLTIKC-GRL-VRCVDLSTKVDKVAL 128
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
+ LA PDIV++TP + L G + S DSL+ LV+DEADL+ ++G+E+DLK +
Sbjct: 129 KHILAERPDIVVSTPAKLVSQLQEGNI---SVKDSLQTLVVDEADLMFTFGFENDLKTVL 185
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-VQQFWISCS 265
P Q +L SAT DV +LKK+ILHNP IL L E E+ P + + + I
Sbjct: 186 DYFPSVHQSILASATLEKDVMELKKIILHNPVILKLEE-----PEMAPASQLAHYHILAE 240
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
E DK + TL KL+LV+ K++IF N+ID +RLKLFLE+F I+S ILN+ELP R H
Sbjct: 241 EVDKAAVLYTLFKLQLVKGKSIIFVNSIDRCYRLKLFLEQFSIRSCILNSELPAKIRCHT 300
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
+ +FN GL+D +IA+D+ D S +K K +++SE GV RGIDF+ V
Sbjct: 301 VNQFNQGLYDIIIASDELHV--LDPSVNEKKGQKKKMIKQIAKQVESEAGVSRGIDFQFV 358
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNI 445
VINF+ P++ Y+HR GRT R NTG+ +SLVS +E + + ++ + E +
Sbjct: 359 SNVINFDFPKDVNAYIHRAGRTARGNNTGSVLSLVSIEEKEAMDAVEDHLRPGYEEGDQV 418
Query: 446 IAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDL 505
+ + + VE RYRA D ++VTK ++RE+R ++++ E+ NSEKLK+ FE NP+DL
Sbjct: 419 LKSYHFKMEE-VEPFRYRARDAWRAVTKFSIREARIKEIKTEMFNSEKLKSFFEENPRDL 477
Query: 506 DLLKHDKDLSKKPPASHLRDVPDYLL 531
L+HD+ L HL DVP+Y++
Sbjct: 478 QALRHDRTLHTVKVQEHLGDVPEYIV 503
>gi|169849877|ref|XP_001831637.1| ATP-dependent RNA helicase dbp9 [Coprinopsis cinerea okayama7#130]
gi|116507275|gb|EAU90170.1| ATP-dependent RNA helicase dbp9 [Coprinopsis cinerea okayama7#130]
Length = 633
Score = 365 bits (936), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 227/571 (39%), Positives = 324/571 (56%), Gaps = 90/571 (15%)
Query: 33 LDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLF--- 89
LD R++ AL G +PTL+Q +IPL LE +D++ARA+TGSGKT AY +P++ ++
Sbjct: 20 LDSRILRALADMGFARPTLVQAKAIPLALESRDILARARTGSGKTAAYCIPVVQKILSAK 79
Query: 90 ---NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
+E PK + A AL+LVPTREL +QV + L+ C +V L TS +
Sbjct: 80 NGLDEDDPKRR-ATRALILVPTRELAEQVSGYLRTLLVYCDQEVTL--CNATSGSASHLQ 136
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKAL 205
+ LA PDI+IATP + LS ++QSK+ S S+ LV+DEADL+LSYG++DD++ L
Sbjct: 137 KQLLADQPDILIATPS---RTLS--LVQSKALSLGSIDSLVIDEADLILSYGHDDDVRQL 191
Query: 206 --SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWIS 263
+ P+ Q LMSAT + DV+ LK L L NP IL L E +DE + Q+ +
Sbjct: 192 FKGSHFPKVYQSFLMSATMTEDVEMLKGLTLRNPAILKLEEG---EDEAAL--LTQYAVR 246
Query: 264 CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
CSE DK L +LKL+L++ K +IF N +D ++RLKLFLE+F IKS +LN+ELP NSR
Sbjct: 247 CSEVDKFLLTYVILKLKLIKGKCIIFVNDVDRSYRLKLFLEQFSIKSCVLNSELPLNSRY 306
Query: 324 HILEEFNAGLFDYLIATDD----------------------TQT---------------- 345
H ++EFN G++DY+IATD+ T T
Sbjct: 307 HTVQEFNKGVYDYIIATDEAGVQDEYDTEDEDEGDGEGEEFTSTQRGEADENEASEEEES 366
Query: 346 --KEKDQSDEGGHVDSRKSKKHPKAKL------DSEFGVVRGIDFKNVHTVINFEMPQNA 397
K K+Q + VDS + K + D E+GV RG+DF +V V+NF++P ++
Sbjct: 367 PKKSKNQGKKRKRVDSPEPSSKSKKRKQSKHVSDKEYGVTRGVDFVDVACVLNFDLPTSS 426
Query: 398 AGYVHRIGRTGRAYNTGASVSLVSPDEM-----------------KIFEEIKSFVGDDEN 440
Y HR+GRT RA TG S+S V P E+ K+F+ I+ ++
Sbjct: 427 RSYTHRVGRTARAGRTGMSLSFVVPRELWGKDKVVGGLPSAEHDEKVFKRIEK----EQG 482
Query: 441 EDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEV 500
+ I + VE+ RYR +D +SVT+ A+RE+R ++L+ EILNS+KLKAHFE
Sbjct: 483 ARGSTIKEYN-FDMKQVEAFRYRMQDALRSVTRAAIREARVKELKTEILNSDKLKAHFED 541
Query: 501 NPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 531
NP DL+ L+HDK L H++ +P YLL
Sbjct: 542 NPLDLEYLRHDKPLHPARVQPHMKHIPKYLL 572
>gi|388858151|emb|CCF48219.1| probable ATP dependent RNA helicase of the DEAD-box family
[Ustilago hordei]
Length = 679
Score = 364 bits (935), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 256/653 (39%), Positives = 345/653 (52%), Gaps = 109/653 (16%)
Query: 6 EIPSKEVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKD 65
E+PS EE+AE F + LD RL+ AL G PT IQQ +IPL L GKD
Sbjct: 50 ELPS-------EEDAERLGFNVFSHI-LDPRLLRALADLGYGIPTPIQQKAIPLALAGKD 101
Query: 66 VVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPA-----ALVLVPTRELCQQVYSEVM 120
++ARA+TGSGKT AY LPLL ++ + S +K P ALVLVPTREL +QV +
Sbjct: 102 ILARARTGSGKTLAYGLPLLQKVLDAKSVMAKSDPNHQLTRALVLVPTRELAEQVLRHLS 161
Query: 121 ALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD 180
+IE ++L V +S R L+ PD+VIATP L L KS +
Sbjct: 162 VIIEYVGDDIRLVNVARDASEKVQ--RLLLSEKPDVVIATPSKALSYLQNASLDLKSGME 219
Query: 181 SLKILVLDEADLLLSYGYEDDLKAL--SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPY 238
SL I DEADL+LSYG++ D+K+L +P Q LLMSAT +SDV KLK L+L P
Sbjct: 220 SLAI---DEADLILSYGHDADVKSLLSGNYLPSHFQSLLMSATMTSDVSKLKGLLLRKPV 276
Query: 239 ILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFR 298
+L L E DE N+ QF+ SE DK L + +LKL+L++ KA++F N ++ +R
Sbjct: 277 VLKLNE----SDESSASNLVQFYTKTSEEDKFLLVYIILKLKLIRGKAILFVNELERGYR 332
Query: 299 LKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ-------------- 344
LKLFLEKFG+K+ +LNAELP NSR I+EEFN G FDY++ATD+
Sbjct: 333 LKLFLEKFGLKACVLNAELPINSRYSIVEEFNKGRFDYIVATDEPTGLGKADADQDEDKD 392
Query: 345 --------------------TKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 384
+K +SD SRK +K K+K +EFGV RG+DF N
Sbjct: 393 EDENEEEEETREVEDAGEEVAGKKRKSDTASSKKSRKKQKQSKSKTSAEFGVSRGVDFIN 452
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSP-----------------DE--M 425
V VINF++P GY+HRIGRT R +G S+S V P DE +
Sbjct: 453 VSCVINFDLPTTVDGYIHRIGRTARGGASGTSLSFVVPASEYGKSKYLNCPSTIKDESVL 512
Query: 426 KIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLR 485
+ S +G + E S ++VE RYR D KS+TK+ +RE+R ++L+
Sbjct: 513 RKISRSTSAIGGEVQEWS--------YDASSVEGFRYRVSDTLKSITKLLIREARIKELK 564
Query: 486 NEILNSEKLKAHFEVNPKDLDLLKHDKD-LSKKPPASHLRDVPDYLLDAKTQEACKMVKL 544
+EIL S KL++HF+ +P DL L+HDK L+ + HL+ VP YL+ A K+
Sbjct: 565 HEILTSTKLQSHFQDHPDDLSYLQHDKALLNSRAQQGHLKHVPQYLVPKIINPASKLTGS 624
Query: 545 ARAA---------------------MGNKN-SSRRQGPRRKFR-KSDPLKSFS 574
+ MG K+ SS +G K R K+DPL+ FS
Sbjct: 625 TGSTYKGYVPKNKHLDGKDSKKNRLMGAKSKSSTAKGNGVKGRKKADPLRKFS 677
>gi|219112795|ref|XP_002178149.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217411034|gb|EEC50963.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 512
Score = 364 bits (935), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 215/513 (41%), Positives = 323/513 (62%), Gaps = 26/513 (5%)
Query: 29 EELGLDLRLVHALNKKGIQKPTLIQQASIPLILE-GKDVVARAKTGSGKTFAYLLPLLHR 87
E +GLD+RL A+++ G +PTL+Q +PL L G+D++ RA+TGSGKT AY LPLL +
Sbjct: 15 ESVGLDVRLRKAVSRLGHVRPTLVQSKCLPLALSSGRDLLVRARTGSGKTLAYSLPLLQK 74
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQL------TSSM 141
+ +SK A+VL+PTRELC QV+ + L C + + ++ +
Sbjct: 75 ILQ----RSKSGVGAVVLIPTRELCTQVHQVLQGLSYYCNDIISIAILSAGRGRGEKAQE 130
Query: 142 PASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDD 201
+ A L P++++ATP + + +G+L KS S++ LV+DEADL+LS+GY D
Sbjct: 131 ELTRQEAMLRDQPNVLVATPAGLLTQIRSGLLDLKS---SVETLVVDEADLVLSFGYAKD 187
Query: 202 LKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW 261
+ + +PR CQ LMSAT S ++D LKK++L++P +L L + D K +++QF+
Sbjct: 188 IAEIVKSLPRICQGFLMSATLSPELDSLKKIVLNSPVVLKLEQ--DEKTSTGVGHLKQFY 245
Query: 262 ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 321
++ +RDK L + LKL L++ K L F N+ D +RLKLFLE+F I+SA+LNAELP S
Sbjct: 246 VALPKRDKNLVVYVFLKLGLLKGKGLFFVNSTDAGYRLKLFLEQFSIRSAVLNAELPFRS 305
Query: 322 RLHILEEFNAGLFDYLIATD-DTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 380
RL+I+E+FN G FDYLIATD T ++K+ SD+ + +K K K DS++GV RG+
Sbjct: 306 RLNIIEQFNVGNFDYLIATDASTDAEQKEDSDDEHEANVKKLKTR---KADSQYGVSRGL 362
Query: 381 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDEN 440
DF+NV V+N + P N+ Y HR+GRT R G ++S V E++ ++ + + ++
Sbjct: 363 DFRNVSFVVNVDFPLNSRSYSHRVGRTARGGAKGVALSFV---ELESKQQHDTLLAVQDD 419
Query: 441 EDSNIIAPFPL-LAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFE 499
+ S + P PL + +E RYR EDV ++VT++AVRE+RA +L+ EILNSE+L+AHFE
Sbjct: 420 QPSTPL-PVPLDFDLHEIEGFRYRCEDVQRAVTRMAVRETRAAELKAEILNSERLQAHFE 478
Query: 500 VNPKDLDLLKHDKDLSKKPPAS-HLRDVPDYLL 531
NP DL LL+HD+ + HL+ VP YLL
Sbjct: 479 DNPADLQLLRHDRVATHISRVQDHLKHVPKYLL 511
>gi|270002128|gb|EEZ98575.1| hypothetical protein TcasGA2_TC001089 [Tribolium castaneum]
Length = 550
Score = 364 bits (934), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 218/567 (38%), Positives = 327/567 (57%), Gaps = 37/567 (6%)
Query: 20 AEAEEEK--SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKT 77
AE EEK +F E+ LD R++ A+ K G Q PTLIQ+ +IPL+LEGKDV+ RA+TGSGKT
Sbjct: 2 AEDGEEKPRNFHEMELDDRILKAIAKLGWQTPTLIQERAIPLLLEGKDVLVRARTGSGKT 61
Query: 78 FAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQL 137
A+ +P++ ++ AL+L P++ELC Q+ + L C ++ + V +
Sbjct: 62 AAFTIPVIQKILTLKKTAKHQEIKALILAPSKELCHQICGVIKELTVKCSREI--RCVDV 119
Query: 138 TSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYG 197
+ S + L PDIV+ TP + K + G + K+ S+++LV+DEADL+ S+G
Sbjct: 120 APQVELSVQKPLLVEQPDIVVGTPTRVLKHIKAGYMDLKT---SMELLVIDEADLVFSFG 176
Query: 198 YEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN- 256
YE ++K L +P Q +L SAT S DV LK L+LHNP IL L E E+ P +
Sbjct: 177 YESEVKELLERLPSIYQAILASATLSEDVKNLKSLVLHNPVILKLEE-----PEIAPASQ 231
Query: 257 VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAE 316
+ + + E DK + LLKL L++ K +IF NT+D +++KL+LE+FGI + +LN+E
Sbjct: 232 LSHYHLMAEEMDKATILYALLKLHLIRGKTIIFVNTVDKCYKIKLYLEQFGIPTCVLNSE 291
Query: 317 LPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGV 376
LP R H + +FN G++D ++A+D EK G D K K +S GV
Sbjct: 292 LPAKIRCHSVNQFNQGIYDTIVASD-----EKALEQPGNPNDPELKKSKRKKDKES--GV 344
Query: 377 VRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
RGIDF+ V VINF+ P + YVHR GRT R N G+ +S VS E + E++++
Sbjct: 345 SRGIDFQCVANVINFDFPLDVQSYVHRAGRTARGNNQGSVLSFVSIREKPLLEQVETHFK 404
Query: 437 DDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKA 496
D++ D +I + + VES +YRA+D ++VT+IAVRE+R ++++ EI N +KLK+
Sbjct: 405 SDQD-DVSIFKSYQ-FKLDEVESFKYRAKDAWRAVTRIAVREARLKEIKQEIFNCQKLKS 462
Query: 497 HFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSR 556
+FE NP DL +L+HDK L HL DVP+Y++ + A++G K R
Sbjct: 463 YFEDNPTDLQVLRHDKALHTVKIQQHLSDVPEYIVPPTLK--------GIASLGKKKRKR 514
Query: 557 R-----QGPRRKF--RKSDPLKSFSAE 576
QG +F +K++PL S E
Sbjct: 515 EYYRTSQGSSSRFQAKKNNPLLSMDFE 541
>gi|149236141|ref|XP_001523948.1| hypothetical protein LELG_04761 [Lodderomyces elongisporus NRRL
YB-4239]
gi|152013497|sp|A5E572.1|DBP9_LODEL RecName: Full=ATP-dependent RNA helicase DBP9
gi|146452324|gb|EDK46580.1| hypothetical protein LELG_04761 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 606
Score = 364 bits (934), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 226/620 (36%), Positives = 346/620 (55%), Gaps = 75/620 (12%)
Query: 10 KEVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGK-DVVA 68
K K E ++E +++ L LD RL+ A++K G + PTLIQ ++IPL LE K D++A
Sbjct: 4 KSTKTTAASETYLDDETTWDSLNLDPRLLQAIDKLGFENPTLIQSSAIPLALEEKRDIIA 63
Query: 69 RAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKG 128
+A TGSGKT AY +P++ + + S +L ++VLVPTREL QVY + LI+
Sbjct: 64 KASTGSGKTAAYAIPIIQNIMVQGS---QLGTQSVVLVPTRELSNQVYQFMEQLIKFSNN 120
Query: 129 QVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD--SLKILV 186
++ ++ L+S+ L++ L P+I+I+TP + + L + K D ++K L
Sbjct: 121 KIG--ILNLSSNYSDQVLKSLLINKPEIIISTPSKLIQTLEAH--EGKDIIDLSTVKNLT 176
Query: 187 LDEADLLLSYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPE 244
+DE DL+LS+GY+DDL+ L + +P + Q LMSAT + D+++LK P IL L +
Sbjct: 177 IDEVDLILSFGYKDDLQKLESYLPVKKNLQTFLMSATVNDDLNELKAKFCTKPAILKLDD 236
Query: 245 VGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLE 304
D+ + QF+ +E DK L + KL L++ K ++F N ID +RLKLFLE
Sbjct: 237 -----DQSNNNKLVQFYAKTTEFDKFLLSYVIFKLNLIKGKTIVFVNNIDRGYRLKLFLE 291
Query: 305 KFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTK------------------ 346
+FGI+ ILN+ELP NSRLHI+EEFN ++ LIATDD +
Sbjct: 292 QFGIRCCILNSELPINSRLHIVEEFNKNVYHLLIATDDISVEKEEVDEVDEGEEEHEDAA 351
Query: 347 ---EKDQS-------------DEGGHV--DSRKSKKHPKAKLDSEFGVVRGIDFKNVHTV 388
EK Q E V + K+KKH +K D E+GV RG+DF+NV V
Sbjct: 352 DADEKKQQNNNNNNNNHNNNNKEHKEVLKKNEKNKKHS-SKKDKEYGVSRGVDFRNVACV 410
Query: 389 INFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE------------MKIFEEIKSFVG 436
+NF++P + YVHR+GRT RA +G ++S V P++ K E++ + +
Sbjct: 411 LNFDLPTTSKSYVHRVGRTARAGKSGMALSFVIPEKEVGKHKTASLRSAKKDEKVLNRIV 470
Query: 437 DDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKA 496
+ ++ I P+ VE RYRA+D ++VT+ A+RE+R ++L+NE++NSEKLK
Sbjct: 471 KQQQKNGFEIKPYQ-FDMKQVEGFRYRADDAFRAVTQTAIREARVKELKNELINSEKLKR 529
Query: 497 HFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACK---MVKLARAAMGNKN 553
F+ NP+DL L+HDK+L +HL+ P YLL + K + + +G K
Sbjct: 530 FFQENPRDLASLRHDKELHPARVQAHLKRTPQYLLPESARLDVKNLGFIPFHKNKVG-KY 588
Query: 554 SSRRQGPRRKFRKSDPLKSF 573
+ +G +++ DPLKSF
Sbjct: 589 RKKSKGTKKR----DPLKSF 604
>gi|383862497|ref|XP_003706720.1| PREDICTED: probable ATP-dependent RNA helicase DDX56-like
[Megachile rotundata]
Length = 547
Score = 363 bits (933), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 217/552 (39%), Positives = 324/552 (58%), Gaps = 27/552 (4%)
Query: 26 KSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLL 85
K+F EL LD R++ A+ K G +PTLIQ+ +IPL+LEGKDV+ RA+TGSGKT A+ +PL+
Sbjct: 17 KNFHELELDDRILKAVAKLGWLEPTLIQEKAIPLLLEGKDVLIRARTGSGKTAAFAIPLI 76
Query: 86 HRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASD 145
++ + K L++ P++ELC+Q++ +M+L C +V VV ++ +
Sbjct: 77 QKILLNKRAQKKQDIKGLIVAPSKELCKQIHDVIMSLTIKCSREVN--VVDVSPQLELIA 134
Query: 146 LRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL 205
+ L PDIVI TP + + L ++ K SL+ L++DEADL+ S+GYED++K L
Sbjct: 135 QKPLLNQKPDIVIGTPSRLLQHLKANNMKLKH---SLETLIIDEADLVFSFGYEDEIKNL 191
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIP-KNVQQFWISC 264
+ +P Q L SAT S DV LKKL+LH P L L E + P + + ++
Sbjct: 192 LSYLPTVYQAALASATLSEDVLTLKKLVLHRPVTLKLEE-----PPLAPLSQLSHYSLAA 246
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
E DK + LLKL LV+ K +IF NT+D ++LKLFLE+FGI + +LN+ELP SR
Sbjct: 247 EENDKAAILYALLKLNLVRGKTIIFVNTVDRCYKLKLFLEQFGIPTCVLNSELPALSRCR 306
Query: 325 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 384
+ +FN+G +D +IA+D ++S E H+ K K K D E GV RGIDF+
Sbjct: 307 AVSQFNSGTYDIIIASD-------EKSLEEPHIIKVKRGKRKK---DKESGVARGIDFQF 356
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSN 444
V VINF+ P + Y+HR GRT R N G ++S +S E + E+++S + N D+
Sbjct: 357 VSNVINFDFPPDVNSYIHRAGRTARGKNQGTALSFISIRERPLLEQVESELKHCYNRDAL 416
Query: 445 I-IAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPK 503
F L VE RYRA+D K+VT+IAVRE+R ++++ E+LN +KLK++FE NP+
Sbjct: 417 FKTYQFKL---EEVEGFRYRAKDAWKAVTRIAVREARLKEIKQEVLNCDKLKSYFEDNPR 473
Query: 504 DLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRK 563
DL L+ DK L HL+DVP+Y++ + + K R + +S+ + K
Sbjct: 474 DLQSLRQDKALHTVKLQPHLKDVPEYIVPPTLKRLVGIGKRKRKFNRDAATSKPTATQLK 533
Query: 564 F--RKSDPLKSF 573
+ R S+PL S
Sbjct: 534 YKARASNPLISL 545
>gi|443924692|gb|ELU43680.1| ATP-dependent RNA helicase DBP9 [Rhizoctonia solani AG-1 IA]
Length = 617
Score = 363 bits (932), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 223/573 (38%), Positives = 321/573 (56%), Gaps = 82/573 (14%)
Query: 23 EEEKSFEELG--LDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAY 80
+ E+SF+ +D RL+ AL G +PTL+Q +IPL LEG+D++ARA+TGSGKT AY
Sbjct: 8 DSEQSFQTFSNIIDSRLLRALADLGFARPTLVQSKAIPLALEGRDILARARTGSGKTAAY 67
Query: 81 LLPLLHRLFNESS-PKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTS 139
+P+ ++ N + ++ A A++LVPTREL QV + L+ C + K V +
Sbjct: 68 CIPVAQKILNSKTIANAQQAARAVILVPTRELADQVTKHLKGLLAYCDKDI--KAVNIAG 125
Query: 140 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE 199
+ +A PD+++ATP + L L S V+DEADL+LSYG++
Sbjct: 126 GASGYTQKLIIAEKPDLIVATPSRLLALLRVKALSLSSLESL----VIDEADLILSYGHD 181
Query: 200 DDLKAL--SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNV 257
+D+K + +P+ Q LMSAT + DV+ LK + IL L E KDE N+
Sbjct: 182 EDVKQILSGGHLPKLYQTFLMSATMTKDVETLKGIA-----ILKLEED---KDEA--ANL 231
Query: 258 QQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAEL 317
Q+ + CSE DK L +LKL+LV+ K LIF N +D +R+KLFLE+F IKS +LN+EL
Sbjct: 232 TQYAVKCSEVDKFLLTYVILKLKLVKGKCLIFVNDVDRGYRVKLFLEQFSIKSCVLNSEL 291
Query: 318 PQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDE-----------------GG----- 355
P NSR HI++EFN G++DY+IATD+T K +DQ + GG
Sbjct: 292 PLNSRFHIVQEFNKGVYDYIIATDETGGKHEDQDTDDEKEAEEEEVGSEAEAEGGEDLIT 351
Query: 356 -----------------------HVDSRK-SKKHPKAKLDSEFGVVRGIDFKNVHTVINF 391
+S+K SKKH AK D EFGV RGIDF +V V+NF
Sbjct: 352 TEPTEAGEAGPSNPPPKRKRAPPQPESQKPSKKHRTAKKDKEFGVSRGIDFVDVACVLNF 411
Query: 392 EMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENE---------- 441
++P+++ Y HR+GRT RA +G ++S V P E +++ S + +E
Sbjct: 412 DLPRSSRAYTHRVGRTARAGRSGMALSFVVPKEEFGKDKVLSCASSERDEIVFARIEKEQ 471
Query: 442 ---DSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHF 498
S + +AQ VE+ RYR ED ++VTK AVRE+R ++L+ E+LNSEKLK HF
Sbjct: 472 GARGSKVKDYVFDMAQ--VEAFRYRMEDALRAVTKSAVREARVKELKTELLNSEKLKTHF 529
Query: 499 EVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 531
E NP DL+ ++HDK L +H++ VP YL+
Sbjct: 530 EENPLDLEYIRHDKSLHPTRVQAHMKHVPKYLM 562
>gi|24643725|ref|NP_523434.2| helicase [Drosophila melanogaster]
gi|3378056|gb|AAC28406.1| helicase [Drosophila melanogaster]
gi|17944409|gb|AAL48095.1| RE72861p [Drosophila melanogaster]
gi|22833199|gb|AAF50818.2| helicase [Drosophila melanogaster]
Length = 560
Score = 363 bits (932), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 219/572 (38%), Positives = 335/572 (58%), Gaps = 32/572 (5%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F EL LD R++ A+ + G Q+PTLIQ +IPL+LEGKDVV RA+TGSGKT Y LPL+ +
Sbjct: 11 FHELELDQRILKAVAQLGWQQPTLIQSTAIPLLLEGKDVVVRARTGSGKTATYALPLIQK 70
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+ N S+ +A+VL PT+ELC+Q + L+E C V++ + +S+ + R
Sbjct: 71 ILNSKLNASEQYVSAVVLAPTKELCRQSRKVIEQLVESCGKVVRVADIADSSNDTVTQ-R 129
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD--SLKILVLDEADLLLSYGYEDDLKAL 205
AL+ PDIV+ATP + G S D ++ LV+DEADL+ +YGYE D K L
Sbjct: 130 HALSESPDIVVATPANLLAYAEAG-----SVVDLKHVETLVVDEADLVFAYGYEKDFKRL 184
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-VQQFWISC 264
+P Q +L+SAT + DV ++K L L+NP L L E E++P++ + I
Sbjct: 185 IKHLPPIYQAVLVSATLTDDVVRMKGLCLNNPVTLKLEE-----PELVPQDQLSHQRILA 239
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
E DK + LLKL L++ K++IF N+ID ++++LFLE+FGI++ +LN+ELP N R+H
Sbjct: 240 EENDKPAILYALLKLRLIRGKSIIFVNSIDRCYKVRLFLEQFGIRACVLNSELPANIRIH 299
Query: 325 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 384
+ +FN G +D +IA+D E GG S ++K P++ D E RGIDF+
Sbjct: 300 TISQFNKGTYDIIIASD-----EHHMEKPGG--KSATNRKSPRSG-DMESSASRGIDFQC 351
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD--ENED 442
V+ VINF+ P++ Y+HR GRT R N G+ +S VS E K+ + ++ + D E
Sbjct: 352 VNNVINFDFPRDVTSYIHRAGRTARGNNKGSVLSFVSMKESKVNDSVEKKLCDSFAAQEG 411
Query: 443 SNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNP 502
II + + VES RYRA+D ++ T++AV ++R ++++ EILN EKLKA FE N
Sbjct: 412 EQIIKNYQFKMEE-VESFRYRAQDCWRAATRVAVHDTRIREIKIEILNCEKLKAFFEENK 470
Query: 503 KDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSS--RRQGP 560
+DL L+HDK L SHL D+P+Y++ + ++V + + +G + R+
Sbjct: 471 RDLQALRHDKPLRAIKVQSHLSDMPEYIVPKALK---RVVGTSSSPVGASEAKQPRQSAA 527
Query: 561 RRKFRK--SDPLKSFSAEPTKRAGKGRMKREG 590
+ F + +DPL + + KR R K++
Sbjct: 528 KAAFERQVNDPLMASQVDFGKRRPAHRRKKKA 559
>gi|194897631|ref|XP_001978693.1| GG17541 [Drosophila erecta]
gi|190650342|gb|EDV47620.1| GG17541 [Drosophila erecta]
Length = 559
Score = 363 bits (931), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 217/566 (38%), Positives = 330/566 (58%), Gaps = 24/566 (4%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F EL LD R++ A+ + G Q+PTLIQ +IPL+LEGKDVV RA+TGSGKT Y LPL+ +
Sbjct: 11 FHELELDQRILKAVAQLGWQQPTLIQSTAIPLLLEGKDVVVRARTGSGKTATYALPLIQK 70
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+ N S+ +A+VL PT+ELC+Q + L+E C V++ + +S+ + R
Sbjct: 71 ILNSKLNASEQCVSAVVLAPTKELCRQSRKVIEQLVESCGKVVRVADIAGSSNDTVTQ-R 129
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
ALA PDIV+ATP K L+ S ++ LV+DEADL+ ++GYE D K L
Sbjct: 130 HALAERPDIVVATPA---KLLAHAEAGSVVDLKHVETLVVDEADLVFAFGYEKDFKRLIK 186
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-VQQFWISCSE 266
+P Q +L+SAT + DV ++K L L+NP L L E EV+ ++ + I E
Sbjct: 187 HLPPIYQAVLVSATLTDDVVRMKGLCLNNPVTLKLEE-----PEVVSQDQLTHQRILAEE 241
Query: 267 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
DK + LLKL L++ K++IF N+ID ++++LFLE+FGI++ +LN+ELP N R+H +
Sbjct: 242 NDKPAILYALLKLRLIRGKSIIFVNSIDRCYKVRLFLEQFGIRACVLNSELPANIRIHTI 301
Query: 327 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 386
+FN G +D +IA+D+ ++ GG S ++K P++ D E RGIDF+ V+
Sbjct: 302 SQFNKGTYDIIIASDEHHLEQP-----GG--KSATNRKSPRSG-DMESSASRGIDFQCVN 353
Query: 387 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD--ENEDSN 444
VINF+ P++ Y+HR GRT R N G+ +S VS E K+ + ++ + D E
Sbjct: 354 NVINFDFPRDVTSYIHRAGRTARGNNKGSVLSFVSMKEAKVNDAVEKKLCDSFAAQEGEQ 413
Query: 445 IIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKD 504
II + + VES RYRA+D ++ T++AV ++R ++++ EILN EKLK FE N +D
Sbjct: 414 IIKNYQFKMEE-VESFRYRAQDCWRAATRVAVHDTRIREIKTEILNCEKLKGFFEENKRD 472
Query: 505 LDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKF 564
L L+HDK L SHL D+P+Y++ K + + A R+ + F
Sbjct: 473 LQALRHDKPLRAIKVQSHLSDMPEYIV-PKALKRVVGTNPSTAGASETKQPRQSAAKAAF 531
Query: 565 RK--SDPLKSFSAEPTKRAGKGRMKR 588
+ +DPL + + +R G R K+
Sbjct: 532 ERQANDPLMATQVDFKRRPGPRRKKK 557
>gi|91077434|ref|XP_966623.1| PREDICTED: similar to ATP-dependent RNA helicase DBP9 [Tribolium
castaneum]
Length = 647
Score = 363 bits (931), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 218/567 (38%), Positives = 327/567 (57%), Gaps = 37/567 (6%)
Query: 20 AEAEEEK--SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKT 77
AE EEK +F E+ LD R++ A+ K G Q PTLIQ+ +IPL+LEGKDV+ RA+TGSGKT
Sbjct: 2 AEDGEEKPRNFHEMELDDRILKAIAKLGWQTPTLIQERAIPLLLEGKDVLVRARTGSGKT 61
Query: 78 FAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQL 137
A+ +P++ ++ AL+L P++ELC Q+ + L C ++ + V +
Sbjct: 62 AAFTIPVIQKILTLKKTAKHQEIKALILAPSKELCHQICGVIKELTVKCSREI--RCVDV 119
Query: 138 TSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYG 197
+ S + L PDIV+ TP + K + G + K+ S+++LV+DEADL+ S+G
Sbjct: 120 APQVELSVQKPLLVEQPDIVVGTPTRVLKHIKAGYMDLKT---SMELLVIDEADLVFSFG 176
Query: 198 YEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN- 256
YE ++K L +P Q +L SAT S DV LK L+LHNP IL L E E+ P +
Sbjct: 177 YESEVKELLERLPSIYQAILASATLSEDVKNLKSLVLHNPVILKLEE-----PEIAPASQ 231
Query: 257 VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAE 316
+ + + E DK + LLKL L++ K +IF NT+D +++KL+LE+FGI + +LN+E
Sbjct: 232 LSHYHLMAEEMDKATILYALLKLHLIRGKTIIFVNTVDKCYKIKLYLEQFGIPTCVLNSE 291
Query: 317 LPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGV 376
LP R H + +FN G++D ++A+D EK G D K K +S GV
Sbjct: 292 LPAKIRCHSVNQFNQGIYDTIVASD-----EKALEQPGNPNDPELKKSKRKKDKES--GV 344
Query: 377 VRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
RGIDF+ V VINF+ P + YVHR GRT R N G+ +S VS E + E++++
Sbjct: 345 SRGIDFQCVANVINFDFPLDVQSYVHRAGRTARGNNQGSVLSFVSIREKPLLEQVETHFK 404
Query: 437 DDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKA 496
D++ D +I + + VES +YRA+D ++VT+IAVRE+R ++++ EI N +KLK+
Sbjct: 405 SDQD-DVSIFKSYQ-FKLDEVESFKYRAKDAWRAVTRIAVREARLKEIKQEIFNCQKLKS 462
Query: 497 HFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSR 556
+FE NP DL +L+HDK L HL DVP+Y++ + A++G K R
Sbjct: 463 YFEDNPTDLQVLRHDKALHTVKIQQHLSDVPEYIVPPTLK--------GIASLGKKKRKR 514
Query: 557 R-----QGPRRKF--RKSDPLKSFSAE 576
QG +F +K++PL S E
Sbjct: 515 EYYRTSQGSSSRFQAKKNNPLLSMDFE 541
>gi|68478403|ref|XP_716703.1| hypothetical protein CaO19.3393 [Candida albicans SC5314]
gi|68478522|ref|XP_716643.1| hypothetical protein CaO19.10896 [Candida albicans SC5314]
gi|74679968|sp|Q5A4P9.1|DBP9_CANAL RecName: Full=ATP-dependent RNA helicase DBP9
gi|46438316|gb|EAK97648.1| hypothetical protein CaO19.10896 [Candida albicans SC5314]
gi|46438381|gb|EAK97712.1| hypothetical protein CaO19.3393 [Candida albicans SC5314]
Length = 574
Score = 363 bits (931), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 226/576 (39%), Positives = 333/576 (57%), Gaps = 39/576 (6%)
Query: 23 EEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGK-DVVARAKTGSGKTFAYL 81
++E +++ LD RL+ A+++ G PTLIQ ++IPL LE K D++A+A TGSGKT AY
Sbjct: 11 DDETTWDSFNLDPRLLQAIDQLGFSNPTLIQSSAIPLALEEKRDIIAKASTGSGKTAAYC 70
Query: 82 LPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSM 141
+P+++ L + S + +++LVPTREL QV+ V L+ ++ V+ L+SS
Sbjct: 71 IPIVNNLLTDDSAQ---GIKSIILVPTRELSNQVFQFVEKLLTFSTNKIN--VLNLSSSY 125
Query: 142 PASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDD 201
L + L P+I+I+TP + + L + ++K L +DE DL+LS+GY DD
Sbjct: 126 SDQVLNSLLVNKPEIIISTPAKLIQILEKN--EKNIDLSTVKNLTIDEVDLVLSFGYLDD 183
Query: 202 LKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
LK L + +P + Q LMSAT + D+D LK+ P IL L E D N+ Q
Sbjct: 184 LKKLESYLPVKKNLQTFLMSATVNDDLDDLKQRYCTKPAILKLNE-----DSANQNNLVQ 238
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
++ +E DK L + KL L++ K + F N ID +RLKLFLE+FGI+ ILN+ELP
Sbjct: 239 YYAKTTEFDKFLLAYVIFKLNLIKGKTIAFVNNIDRGYRLKLFLEQFGIRCCILNSELPI 298
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSD-EGGHVDSR---------KSKKHPKAK 369
NSRLHI+EEFN ++ LIATD+T ++Q D E G D++ K K K K
Sbjct: 299 NSRLHIVEEFNKNVYHLLIATDETNELNEEQDDNEDGDEDTKDKGNAETKPKKSKKSKFK 358
Query: 370 LDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSP------- 422
D E+GV RG+DF+NV V+NF++P ++ Y+HRIGRT RA G ++S V P
Sbjct: 359 QDKEYGVSRGVDFRNVACVLNFDLPTSSKAYIHRIGRTARAGKAGMALSFVLPLSEFGKH 418
Query: 423 -----DEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVR 477
K E++ + ++++ I P+ VE RYRA+D ++VT+ AVR
Sbjct: 419 KTASLASAKKDEKVLGRIVKQQSKNGFEIKPYQ-FDMKQVEGFRYRADDAFRAVTQTAVR 477
Query: 478 ESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQE 537
E+R ++L+NE++NSEKLK FE NP+DL L+HDK+L S L++VP YLL ++
Sbjct: 478 EARVKELKNELINSEKLKRFFEENPQDLASLRHDKELHPARIQSQLKNVPQYLLPESARQ 537
Query: 538 ACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSF 573
K + NK R+G + +K DPLKSF
Sbjct: 538 DVKNIGFV-PFHKNKIHKHRKGKGKGRKKVDPLKSF 572
>gi|301777320|ref|XP_002924074.1| PREDICTED: probable ATP-dependent RNA helicase DDX56-like
[Ailuropoda melanoleuca]
Length = 545
Score = 363 bits (931), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 218/513 (42%), Positives = 307/513 (59%), Gaps = 25/513 (4%)
Query: 24 EEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLP 83
E FE +GLD RL+ A+ G +PTLIQ+ +IPL LEGKD++ARA+TGSGKT AY +P
Sbjct: 5 EALGFEHMGLDPRLLQAIADLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIP 64
Query: 84 ----LLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTS 139
LLHR + P + A LVLVPT+EL +Q S + L C + +V +++
Sbjct: 65 ALQLLLHR--KATGPAVEQAVRGLVLVPTKELARQARSMIQQLAAYCARDI--RVADVSA 120
Query: 140 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE 199
+ ++ RA L PD+V+ TP + L+ S DSL++LVLDEADLL S+G+E
Sbjct: 121 AEDSASQRAVLMEKPDMVVGTPS---RVLNHLQQDSLVLRDSLELLVLDEADLLFSFGFE 177
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
++LK+L +PR Q LMSAT + DV LK+L+LHNP L L E P ++Q
Sbjct: 178 EELKSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE----SQLPGPDQLRQ 233
Query: 260 FWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELP 318
F + C +E DK L + LLKL LV+ K+L+F NT+D ++RL+LFLE+F I + +LN ELP
Sbjct: 234 FQVVCQTEEDKFLLLYALLKLSLVRGKSLLFVNTLDRSYRLRLFLEQFSIPTCVLNGELP 293
Query: 319 QNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVR 378
SR HI+ +FN G +D +IATD E + G R SK + D E GV R
Sbjct: 294 LCSRCHIISQFNQGFYDCVIATD----AEVLGAPVKGKRRGRGSKGDRAS--DPEAGVAR 347
Query: 379 GIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD 438
GIDF +V V+NF++P Y+HR GRT RA N G ++ V P E I+ + +
Sbjct: 348 GIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGMVLTFVLPTEQSHLHTIEELLRGE 407
Query: 439 ENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHF 498
+ ++ P+ + +E RYR D +SVTK A+RE+R ++++ E+L+SE+LK +F
Sbjct: 408 NG--APVLLPYQFRMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSERLKTYF 464
Query: 499 EVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 531
E NP+DL LL+HD L HL VPDYL+
Sbjct: 465 EDNPRDLQLLRHDLPLHPAVVKPHLGHVPDYLV 497
>gi|164659008|ref|XP_001730629.1| hypothetical protein MGL_2425 [Malassezia globosa CBS 7966]
gi|159104525|gb|EDP43415.1| hypothetical protein MGL_2425 [Malassezia globosa CBS 7966]
Length = 576
Score = 362 bits (929), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 209/503 (41%), Positives = 296/503 (58%), Gaps = 38/503 (7%)
Query: 49 PTLIQQASIPLILEG--KDVVARAKTGSGKTFAYLLPLLHRLFNESS--PKSKLAPA--- 101
PT +Q+ S+ L G +D++ARA+TGSGKT AY LP++ ++ E P+S A A
Sbjct: 32 PTPVQRESLEHSLGGVARDILARARTGSGKTLAYGLPVIQKILAEKQDIPRSSTAYANTR 91
Query: 102 ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATP 161
ALVLVP+REL +Q ++ A++ C+ VQ V + S+ AS + L+ PDIV+ATP
Sbjct: 92 ALVLVPSRELAEQATRQLSAILTYCRDVVQ--VANIARSVKASVQKLLLSEKPDIVVATP 149
Query: 162 GCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL--SAVIPRGCQCLLMS 219
CL +G L DSL+ LV+DE DL+LSYGY+ D+KA+ + R Q LMS
Sbjct: 150 SRALACLQSGDL---VIRDSLQSLVIDETDLVLSYGYDADVKAILHEGFLSRTHQTFLMS 206
Query: 220 ATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKL 279
AT D + L+ L+L +P +L L D N+ Q+++ SE+DK L + +LKL
Sbjct: 207 ATLDDDTNALRGLMLKDPVVLRLEH-----DPTTAANLTQYYVYTSEQDKFLLVYVILKL 261
Query: 280 ELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIA 339
L++ K L+F N ID +RLKLFLE+FG+++ +LN ELP NSR HI+EEFN G +DY+IA
Sbjct: 262 RLIRGKCLLFVNDIDRCYRLKLFLEQFGLRTCVLNEELPVNSRFHIVEEFNKGKYDYIIA 321
Query: 340 TDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAG 399
T D E D + + + K EF V RGIDF V VINF++P +
Sbjct: 322 T-DVNAAELDPTPAKSSSSASSKSQRSK-----EFSVSRGIDFVAVACVINFDLPTSTRA 375
Query: 400 YVHRIGRTGRAYNTGASVSLVSP------------DEMKIFEEIKSFVGDDENEDSNIIA 447
Y HRIGRT RA NTG ++S + P K E++ + D+ I
Sbjct: 376 YTHRIGRTARAGNTGTALSFIVPRSEFGQKKAIGCSTCKYDEQVWDRILADQKAHGLQIH 435
Query: 448 PFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDL 507
P+ V++ RYR ED +SVTK+A++E+R Q+++ EILNSE LKAHFE NP+DL+
Sbjct: 436 PWN-YDHTQVDAFRYRMEDALRSVTKVAIKEARIQEIKQEILNSEALKAHFEQNPRDLEY 494
Query: 508 LKHDKDLSKKPPASHLRDVPDYL 530
L+HD+ L +H++ VP YL
Sbjct: 495 LRHDRALHPARVQAHMKHVPSYL 517
>gi|380024218|ref|XP_003695902.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
DDX56-like [Apis florea]
Length = 551
Score = 362 bits (929), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 215/568 (37%), Positives = 334/568 (58%), Gaps = 27/568 (4%)
Query: 17 EEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGK 76
E + + E+ K+F EL LD R++ A+ K G +PTLIQ+ +IPL++EGKD++ RA+TGSGK
Sbjct: 7 EVDEDNEKAKTFHELELDDRILKAVAKLGWLEPTLIQEKTIPLMIEGKDILIRARTGSGK 66
Query: 77 TFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQ 136
T A+ +PL+ ++ + + + L++ P++ELC+Q++ +++L C +V K V
Sbjct: 67 TAAFTIPLIQKILSNKRIRRQQEIKGLIIAPSKELCKQIHDVIISLTIKCSREV--KAVD 124
Query: 137 LTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSY 196
++ + S + LA PDI+I+TP + + L ++ K SL+ L++DEADL+ S+
Sbjct: 125 ISPQIDLSAQKPLLAEKPDIIISTPSRLLQHLKAKNVKLKQ---SLETLIIDEADLIFSF 181
Query: 197 GYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIP-K 255
G+E+++K + +P Q +L SAT S DV LKKL+L +P IL L E + P
Sbjct: 182 GHENEIKDILNYLPILYQAVLASATLSEDVITLKKLVLRHPVILKLEE-----PPLAPLS 236
Query: 256 NVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNA 315
+ + ++ E DK + LLKL L++ K +IF NT+D ++LKLFLE+FGI + +LN+
Sbjct: 237 QLSHYSLAAEENDKAAILCALLKLRLIRGKTIIFVNTVDRCYKLKLFLEQFGIATCVLNS 296
Query: 316 ELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFG 375
ELP SR + +FN+G +D +IA+D ++S E H+ K K K D E G
Sbjct: 297 ELPAVSRCRAVTQFNSGTYDIIIASD-------EKSLEEPHIAKIKRGKRKK---DKESG 346
Query: 376 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
V RGIDF+ V V+NF+ P + Y+HR GRT R N G +SLVS E I E+++ +
Sbjct: 347 VARGIDFQFVSNVLNFDFPPDINSYIHRAGRTARGKNDGTVLSLVSIRERPILEDVEVEL 406
Query: 436 GDDENEDSNI-IAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKL 494
N D + F L VE RYRA+D K+VT+IAVRE+R ++ + E+LN +KL
Sbjct: 407 KQCYNCDKLLKTYEFKL---EEVEGFRYRAKDAWKAVTRIAVREARLKEXKQEVLNCQKL 463
Query: 495 KAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNS 554
K++FE NP+DL L+ DK L HL+DVPDY++ + K + +
Sbjct: 464 KSYFEDNPRDLQSLRQDKALHTVKLQPHLKDVPDYIIPPTLKRLVNTSKKKKKFNRETAA 523
Query: 555 SRRQGPRRKF--RKSDPLKSFSAEPTKR 580
S+ R K+ R S+PL S + +K+
Sbjct: 524 SKPTATRSKYRARASNPLMSLQLQNSKK 551
>gi|328771085|gb|EGF81125.1| hypothetical protein BATDEDRAFT_16201 [Batrachochytrium
dendrobatidis JAM81]
Length = 588
Score = 362 bits (929), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 215/546 (39%), Positives = 317/546 (58%), Gaps = 56/546 (10%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
+ LD R+ A+ K G +PTL+Q +IPL LEGKD++ARA+TGSGKT AY +P++ ++
Sbjct: 1 MDLDPRIQRAVAKLGFVQPTLVQAKAIPLALEGKDILARARTGSGKTAAYCIPIIQKILT 60
Query: 91 ESSPKSKLAPA--ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRA 148
+ + PA AL+LVPTREL +QV+ + L +V+ V T + + R+
Sbjct: 61 FKTNNASAPPAIRALILVPTRELAEQVHRHIQQLTMYATKEVR-SVNISTGDVSVAGQRS 119
Query: 149 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 208
LA PDI++ATP + + L+ K ++++ +V+DEADL+LSYG+++D+K L
Sbjct: 120 ILAETPDIIVATPAKIMAHIRENNLELK---ETVESMVIDEADLILSYGHDEDVKKLLLH 176
Query: 209 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERD 268
+PR Q LMSAT S+DV++L++L+L NP IL L E + E+ + Q+ I C E++
Sbjct: 177 LPRILQSYLMSATLSTDVEELRQLVLRNPVILKLEESAE---EL--SMLTQYVIQCEEKE 231
Query: 269 KLLYILTLLKLELV---QKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
K L + KL + KA++F NTID ++LK+FLE FGIKS LN+ELP SR HI
Sbjct: 232 KFLLTFFIFKLHVHPFGSGKAIVFVNTIDRCYKLKIFLESFGIKSCALNSELPLKSRFHI 291
Query: 326 LEEFNAGLFDYLIATD------------DTQTKEKDQS---DEGGHVDSRKSKKHPKAKL 370
++EFN G++D +IATD D +T+E + D+ G S+ + K K +
Sbjct: 292 VQEFNKGVYDIIIATDENSGLFDAEDRADLETEEAKANMTVDDKGKTASKTNNK-SKRES 350
Query: 371 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRA-YNTGASVSLV--SPDEMKI 427
+ E+GV RGIDF NV VINF++P+++ Y HR+GRT R +N G ++S V S + +
Sbjct: 351 NHEYGVSRGIDFVNVQAVINFDLPRSSRAYQHRVGRTARGVHNKGYALSFVTNSSEHTVV 410
Query: 428 FEEIKSFVGDDENEDSNI----------------------IAPFPLLAQNAVESLRYRAE 465
K E + S I I PF VE RYR +
Sbjct: 411 HSSRKKQRAAAEQQSSKIKQMTDAELLPRIEKRQAAMGREILPFAF-DMTQVEGFRYRVD 469
Query: 466 DVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRD 525
DV +TK A++E+R ++++ EILNSEKLK HFE NP+D L+HD+ +HLR
Sbjct: 470 DVLGLITKNAIKEARLKEIKAEILNSEKLKTHFENNPQDFQALRHDRTTHSVRAENHLRH 529
Query: 526 VPDYLL 531
VP+YLL
Sbjct: 530 VPNYLL 535
>gi|444517809|gb|ELV11805.1| Niemann-Pick C1-like protein 1 [Tupaia chinensis]
Length = 1837
Score = 362 bits (928), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 219/523 (41%), Positives = 310/523 (59%), Gaps = 32/523 (6%)
Query: 21 EAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAY 80
E E FE +GLD RL+ A++ G +PTLIQ+ +IPL L+GKD++ARA+TGSGKT AY
Sbjct: 2 EDAESLGFEHMGLDPRLLQAVSDLGWSRPTLIQEKAIPLALDGKDLLARARTGSGKTAAY 61
Query: 81 LLPLLHRLFNE---SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQL 137
LP+L L + SP + A LVLVPT+EL +Q S + L C + +V +
Sbjct: 62 ALPMLQLLLHGKTVGSPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCARDI--RVANV 119
Query: 138 TSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYG 197
+++ A+ RA L PDIV+ TP + LS S DS+++LV+DEADLL S+G
Sbjct: 120 SAAEDAASQRAVLMEKPDIVVGTPS---RILSHLQRDSLKLRDSMELLVVDEADLLFSFG 176
Query: 198 YEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNV 257
+E++LK+L +PR Q LMSAT + DV LK+L+LHNP L L E P +
Sbjct: 177 FEEELKSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE----SQLPGPDQL 232
Query: 258 QQFWISC-SERDKLLYILTLLKLEL------VQKKALIFTNTIDMAFRLKLFLEKFGIKS 310
QQF + C +E DKLL + L L V+ K+L+F NT++ ++RL+LFLE+F I S
Sbjct: 233 QQFQVICETEEDKLLLLFFFLLLYALLKLSLVRGKSLLFVNTLERSYRLRLFLEQFSIPS 292
Query: 311 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAK- 369
+LN ELP SR HI+ +FN G +D +IATD G V ++ + PKA
Sbjct: 293 CVLNGELPLRSRCHIISQFNQGFYDCVIATDAEVL--------GAPVKGKRQGRGPKANK 344
Query: 370 -LDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF 428
D E GV RGIDF +V V+NF++P Y+HR GRT RA N G ++ V P E
Sbjct: 345 ASDPEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGTVLTFVLPVERPHL 404
Query: 429 EEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEI 488
+I+ +G + + ++ P+ + +E RYR D +SVTK A+RE+R ++++ E+
Sbjct: 405 NKIEELLGGENR--APVLLPYQFRMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEEL 461
Query: 489 LNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 531
L+SEKLK +FE NP+DL LL+HD L HL VP+YL+
Sbjct: 462 LHSEKLKTYFEDNPRDLQLLRHDLPLHPAVVKPHLGHVPEYLV 504
>gi|281340691|gb|EFB16275.1| hypothetical protein PANDA_013325 [Ailuropoda melanoleuca]
Length = 496
Score = 362 bits (928), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 218/512 (42%), Positives = 306/512 (59%), Gaps = 25/512 (4%)
Query: 24 EEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLP 83
E FE +GLD RL+ A+ G +PTLIQ+ +IPL LEGKD++ARA+TGSGKT AY +P
Sbjct: 5 EALGFEHMGLDPRLLQAIADLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIP 64
Query: 84 ----LLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTS 139
LLHR + P + A LVLVPT+EL +Q S + L C + +V +++
Sbjct: 65 ALQLLLHR--KATGPAVEQAVRGLVLVPTKELARQARSMIQQLAAYCARDI--RVADVSA 120
Query: 140 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE 199
+ ++ RA L PD+V+ TP + L+ S DSL++LVLDEADLL S+G+E
Sbjct: 121 AEDSASQRAVLMEKPDMVVGTPS---RVLNHLQQDSLVLRDSLELLVLDEADLLFSFGFE 177
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
++LK+L +PR Q LMSAT + DV LK+L+LHNP L L E P ++Q
Sbjct: 178 EELKSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE----SQLPGPDQLRQ 233
Query: 260 FWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELP 318
F + C +E DK L + LLKL LV+ K+L+F NT+D ++RL+LFLE+F I + +LN ELP
Sbjct: 234 FQVVCQTEEDKFLLLYALLKLSLVRGKSLLFVNTLDRSYRLRLFLEQFSIPTCVLNGELP 293
Query: 319 QNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVR 378
SR HI+ +FN G +D +IATD E + G R SK + D E GV R
Sbjct: 294 LCSRCHIISQFNQGFYDCVIATD----AEVLGAPVKGKRRGRGSKGDRAS--DPEAGVAR 347
Query: 379 GIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD 438
GIDF +V V+NF++P Y+HR GRT RA N G ++ V P E I+ + +
Sbjct: 348 GIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGMVLTFVLPTEQSHLHTIEELLRGE 407
Query: 439 ENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHF 498
+ ++ P+ + +E RYR D +SVTK A+RE+R ++++ E+L+SE+LK +F
Sbjct: 408 NG--APVLLPYQFRMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSERLKTYF 464
Query: 499 EVNPKDLDLLKHDKDLSKKPPASHLRDVPDYL 530
E NP+DL LL+HD L HL VPDYL
Sbjct: 465 EDNPRDLQLLRHDLPLHPAVVKPHLGHVPDYL 496
>gi|344300058|gb|EGW30398.1| hypothetical protein SPAPADRAFT_157367 [Spathaspora passalidarum
NRRL Y-27907]
Length = 578
Score = 361 bits (927), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 228/588 (38%), Positives = 339/588 (57%), Gaps = 52/588 (8%)
Query: 19 EAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGK-DVVARAKTGSGKT 77
+A +EE S++ LD RL+ AL++ G +KPTLIQ +SIPL LE K D++A+A TGSGKT
Sbjct: 8 QAYLDEEASWDSFNLDPRLLQALDQLGFEKPTLIQSSSIPLALEEKRDIIAKASTGSGKT 67
Query: 78 FAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQL 137
AY +P+++ L S+ + ++ +++LVPTREL QVY + L L ++ ++ L
Sbjct: 68 GAYCIPIVNNLLTRSTDEHEIK--SIILVPTRELSNQVYEFLEKL--LVFNNQKINILNL 123
Query: 138 TSSMPASDLRAALAGPPDIVIATPGCMPKCL---STGVLQSKSFSDSLKILVLDEADLLL 194
+S+ L + L P+I+I+TP + + L S G++ + S+ L +DE DL+L
Sbjct: 124 SSNYSDQVLNSLLINKPEIIISTPAKLIQTLEKNSKGLIDLSTVSN----LTIDEVDLVL 179
Query: 195 SYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEV 252
S+GY DDLK L + +P + Q LMSAT + +++ LK P IL L + K +
Sbjct: 180 SFGYLDDLKKLESYLPIKKNLQTFLMSATINEELNDLKMRYCTKPAILKLNDETAEKQSL 239
Query: 253 IPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAI 312
+ Q++ +E DK L + KL L++ K +IF N ID +RLKL+LE+FGI+ I
Sbjct: 240 V-----QYYAKTTEFDKFLLCYVIFKLNLIKGKTIIFVNNIDRGYRLKLYLEQFGIRCCI 294
Query: 313 LNAELPQNSRLHILEEFNAGLFDYLIATDDTQ--TKEK-----------DQSDEGGHVDS 359
LN+ELP NSRLHI+EEFN ++ LIATD+T T EK +Q
Sbjct: 295 LNSELPINSRLHIVEEFNKNVYHLLIATDETNDFTVEKEEDSEGEREREEQEQAQEEKKE 354
Query: 360 RKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSL 419
K K AK DSE+GV RG+DF+NV V+NF++P + Y+HRIGRT RA +G ++S
Sbjct: 355 SKKSKKKGAKKDSEYGVSRGVDFRNVACVLNFDLPTTSKAYIHRIGRTARAGKSGMALSF 414
Query: 420 VSPDEMKIF--------------EEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAE 465
+ P +K F E++ + ++ + I P+ VE RYRAE
Sbjct: 415 IIP--LKEFGKHKIANLATAKKDEKVLRRIIKQQSRNGFEIKPYQ-FDMKQVEGFRYRAE 471
Query: 466 DVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRD 525
D ++VT+ +VRE+R ++L+NE++NSEKLK FE NP+DL L+HDK+L S L+
Sbjct: 472 DAFRAVTQTSVREARVKELKNELINSEKLKRFFEENPQDLATLRHDKELHPTRIQSQLKR 531
Query: 526 VPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSF 573
VP YLL + K + +KN + R+ +KSDPLK+F
Sbjct: 532 VPQYLLPESARSDPKNIGFVPF---HKNKVHKNRKRKSTKKSDPLKTF 576
>gi|328710486|ref|XP_001948002.2| PREDICTED: probable ATP-dependent RNA helicase DDX56-like
[Acyrthosiphon pisum]
Length = 546
Score = 361 bits (927), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 192/521 (36%), Positives = 321/521 (61%), Gaps = 25/521 (4%)
Query: 23 EEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLL 82
E +F E+ +D R++ A+ +G +PTL+Q+ IPL+LEGKD++ RA+TGSGKT A+++
Sbjct: 2 ESHINFHEMNIDDRILKAIANQGWTEPTLVQEHGIPLLLEGKDMLVRARTGSGKTAAFVI 61
Query: 83 PLLHRL--FNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSS 140
P++ ++ F + + + AL+L P++ELC Q++ ++ L C V K V ++
Sbjct: 62 PVIQKILEFKDINADT-YCTQALILAPSKELCNQIFKNILQLTIKCSRDV--KCVDISDQ 118
Query: 141 MPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYE 199
+ + + L PPD+++ATP + LQ K+ + L+ LV+DEADL+ S+G+E
Sbjct: 119 IDMKEQQPLLNIPPDVIVATPA-----RALLHLQGKNMTLKKLQTLVVDEADLVFSFGFE 173
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
+++K + +P+ Q +L SAT S DV LKKL+L N IL L E D +
Sbjct: 174 EEIKEVIKFLPKTYQAVLASATLSEDVMALKKLLLRNAVILKLQE----PDLAPLSQLTH 229
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+ ++ E DK + + + KL+LV+ K ++F N++D ++LKLFLE+FG+ + +LN+ELP
Sbjct: 230 YKLNAEEEDKAVILYCIFKLKLVKGKTIVFVNSVDKCYKLKLFLEQFGVHTCVLNSELPA 289
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
+ R H + +FN ++D ++A+D+ K D+ E + K +KH D EF + RG
Sbjct: 290 SCRCHTINQFNDNIYDIILASDE---KFLDEEHEITSTSTNK-RKH-----DKEFSIARG 340
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDE 439
IDF+ V VINF+ PQ+ Y+HR+GRT R N G ++S ++ E+ + ++++ ++
Sbjct: 341 IDFQFVSIVINFDFPQDIYSYIHRVGRTARGKNKGTAISFLNIKELNLLKDVEDYIKQGI 400
Query: 440 NEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFE 499
+E+++I F + VE RYRA+D ++VTKIAVRE+R +++++E+LNS+KLK +F+
Sbjct: 401 SEENDIFQDFNFKLEE-VEGFRYRAKDAWRAVTKIAVREARLKEIKSEMLNSKKLKRYFQ 459
Query: 500 VNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACK 540
NP+DL L+HDK L H+ DVPDY++ +E K
Sbjct: 460 ENPRDLLSLRHDKALHTVKLQDHMSDVPDYMVPTSLKEYIK 500
>gi|395850076|ref|XP_003797626.1| PREDICTED: probable ATP-dependent RNA helicase DDX56 [Otolemur
garnettii]
Length = 547
Score = 361 bits (927), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 220/553 (39%), Positives = 318/553 (57%), Gaps = 27/553 (4%)
Query: 24 EEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLP 83
E FE +GLD R++ A+ G +PTLIQ+ +IPL LEGKD++ARA+TGSGKT AY +P
Sbjct: 5 EYLGFEHMGLDHRILQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIP 64
Query: 84 LLHRLFNE--SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSM 141
+L L + + P + A LVLVPT+EL +Q S + L C V +V ++++
Sbjct: 65 MLQLLLHRKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLAAYCARDV--RVANVSAAD 122
Query: 142 PASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDD 201
++ RA L PD+V+ TP + LS + DSL++LV+DEADLL S+G+E++
Sbjct: 123 DSASQRAVLMEKPDVVVGTPS---RILSHLQQDNLKLHDSLELLVVDEADLLFSFGFEEE 179
Query: 202 LKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW 261
LK L +PR Q LMSAT + DV LK+L+LHNP L L E P +QQF
Sbjct: 180 LKNLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE----SQLPGPDQLQQFQ 235
Query: 262 ISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 320
+ C +E DK L + LLKL L++ K+L+F NT++ ++RL+LFLE+F I + +LN ELP
Sbjct: 236 VVCDTEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPLR 295
Query: 321 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 380
SR HI+ +FN G +D +IATD + G P+A GV RGI
Sbjct: 296 SRCHIISQFNQGFYDSVIATDAEVLGPPAKGKRRGRGPRGDKGSDPEA------GVARGI 349
Query: 381 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDEN 440
DF +V V+NF++P Y+HR GRT RA N G ++ V P E ++I+ + +
Sbjct: 350 DFHHVSAVLNFDLPPTPEAYIHRAGRTARANNLGIVLTFVLPTEKAHLDKIEKLLSGENG 409
Query: 441 EDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEV 500
+ ++ P+ + +E RYR D +SVTK A+RE+R ++++ E+L+SEKLK +FE
Sbjct: 410 --APVLLPYQFRMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFED 466
Query: 501 NPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGP 560
NP+DL LL+HD L HL VPDYL+ + L R K S
Sbjct: 467 NPRDLQLLRHDLPLHPAVVKPHLGHVPDYLVPPALR------GLVRPHKKRKKLSSSCRK 520
Query: 561 RRKFRKSDPLKSF 573
+K + +PL+SF
Sbjct: 521 TKKVKAQNPLRSF 533
>gi|347300354|ref|NP_001231472.1| probable ATP-dependent RNA helicase DDX56 [Sus scrofa]
Length = 546
Score = 361 bits (926), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 224/561 (39%), Positives = 324/561 (57%), Gaps = 34/561 (6%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
FE +GLD RL+ A+ G +PTLIQ+ +IPL LEGKD++ARA+TGSGKT AY +P+L
Sbjct: 8 GFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQ 67
Query: 87 RLFNESS--PKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
L + + P + A LVLVPT++L +Q S + L C + +V ++++ ++
Sbjct: 68 LLLHRKAIGPAVEQAVRGLVLVPTKDLARQAQSMIQQLAAYCARDI--RVANVSAAEDSA 125
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
RA L PDIV+ TP + L L+ DSL++LV+DEADLL S+G+E++LK+
Sbjct: 126 SQRAVLMEKPDIVVGTPSRILNHLQQDNLK---LRDSLELLVVDEADLLFSFGFEEELKS 182
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264
L +PR Q LMSAT + DV LK+L+LHNP L L E P +QQF + C
Sbjct: 183 LLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE----SQLPGPDQLQQFQVVC 238
Query: 265 -SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+E DK L + LLKL L++ K+L+F NT++ ++RL+LFLE+F I + +LN ELP SR
Sbjct: 239 ETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPACVLNGELPLRSRC 298
Query: 324 HILEEFNAGLFDYLIATD----DTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
HI+ +FN GL+D +IATD K K + G R S D E GV RG
Sbjct: 299 HIISQFNQGLYDCVIATDAEVLGPPVKGKGKQRGKGPKGERAS--------DPEAGVARG 350
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDE 439
IDF +V V+NF++P Y+HR GRT RA N G ++ V P E +I+ + +
Sbjct: 351 IDFHHVCGVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSHLGKIEELLSGEN 410
Query: 440 NEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFE 499
+ + F + +E RYR D +SVTK A+RE+R ++++ E+L+SEKLK +FE
Sbjct: 411 GAPALLPYQFRM---EEIEGFRYRRRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFE 467
Query: 500 VNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQG 559
NP+DL LL+HD L HL +VPDYL+ + + K + + K +
Sbjct: 468 DNPRDLQLLRHDLPLHPAVVKPHLGNVPDYLVPPALRGLVRPHKKRKKPLSAKKA----- 522
Query: 560 PRRKFRKSDPLKSFSAEPTKR 580
+K + +PL+SF KR
Sbjct: 523 --KKVKTQNPLRSFKHRGEKR 541
>gi|195568017|ref|XP_002107552.1| GD15498 [Drosophila simulans]
gi|194204962|gb|EDX18538.1| GD15498 [Drosophila simulans]
Length = 557
Score = 361 bits (926), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 217/569 (38%), Positives = 330/569 (57%), Gaps = 29/569 (5%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F EL LD R++ A+ + G Q+PTLIQ +IPL+LEGKDVV RA+TGSGKT Y LPL+ +
Sbjct: 11 FHELELDQRILKAVAQLGWQQPTLIQSTAIPLLLEGKDVVVRARTGSGKTATYALPLIQK 70
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+ N S+ +A+VL PT+ELC+Q + L+E C V++ + +S+ + R
Sbjct: 71 ILNSKLNASEQYVSAVVLAPTKELCRQSRKVIEQLVESCGKVVRVADIADSSNDTVTQ-R 129
Query: 148 AALAGPPDIVIATPG-CMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
AL+ PDIV+ATP + + GV+ K ++ LV+DEADL+ +YGYE D K L
Sbjct: 130 HALSENPDIVVATPANLLAYAEARGVVDLK----HVETLVVDEADLVFAYGYEKDFKRLI 185
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-VQQFWISCS 265
+P Q +L+SAT + DV ++K L L NP L L E E++P++ + I
Sbjct: 186 KHLPPIYQAVLVSATLTDDVVRMKGLCLKNPVTLKLEE-----PELVPQDQLTHQRILAE 240
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
E DK + LLKL L++ K++IF N+ID ++++LFLE+FGI++ +LN+ELP N R+H
Sbjct: 241 ENDKPAILYALLKLRLIRGKSIIFVNSIDRCYKVRLFLEQFGIRACVLNSELPANIRIHT 300
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
+ +FN G ++ +IA+D E GG ++K P++ D E RGIDF+ V
Sbjct: 301 ISQFNKGTYNIIIASD-----EHHMEKPGG-----TNRKSPRSG-DMESSASRGIDFQCV 349
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD--ENEDS 443
+ VINF+ P++ Y+HR GRT R N G+ +S VS E K+ + + + D E
Sbjct: 350 NNVINFDFPRDVTSYIHRAGRTARGNNKGSVLSFVSTKEAKVNDLVAKKLCDSFAAQEGE 409
Query: 444 NIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPK 503
I+ + + VES RYRA+D ++ T++AV ++R ++++ EILN EKLK FE N +
Sbjct: 410 EIMKNYQFKMEE-VESFRYRAQDCWRAATRVAVHDTRIREIKTEILNCEKLKGFFEENKR 468
Query: 504 DLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRK 563
DL L+HDK L SHL D+P+Y++ + + A A K R+ G
Sbjct: 469 DLQALRHDKPLRAIKVHSHLSDMPEYIVPKALKRVVGTLPSAAGASEAKQ-PRQHGAEAA 527
Query: 564 FRK--SDPLKSFSAEPTKRAGKGRMKREG 590
F++ +DPL + + KR R K++
Sbjct: 528 FKRQANDPLMASHVDLGKRRPAHRRKKKA 556
>gi|427795535|gb|JAA63219.1| Putative atp-dependent rna helicase, partial [Rhipicephalus
pulchellus]
Length = 532
Score = 360 bits (925), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 213/560 (38%), Positives = 315/560 (56%), Gaps = 38/560 (6%)
Query: 22 AEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYL 81
+++E F E+GLD RL+ A+ K G KPT IQ+ ++PLILEGKDV+ARA+TGSGKT +
Sbjct: 6 SDKELEFHEMGLDDRLLKAIAKLGWGKPTPIQEKAVPLILEGKDVLARARTGSGKTGGFC 65
Query: 82 LPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSM 141
LP++HRL + A ++L PT+ELC Q+ V L L+ V ++ +
Sbjct: 66 LPMIHRLMQYRVDQEP-ATRGIILAPTKELCGQIARCVSQL-----SGTWLRCVDVSGTA 119
Query: 142 PASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDD 201
+ R LA P IV+ TP + L G L K L++LV+DEADL+LS+G+E D
Sbjct: 120 DLAIQRPLLAERPAIVVGTPSRILAHLKAGHLTLK-----LEMLVIDEADLVLSFGHEQD 174
Query: 202 LKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW 261
L L +P CQ +L SAT S +V LK+L L N L L E E + + Q+
Sbjct: 175 LNELLTRLPNKCQTILTSATLSPEVLNLKRLALRNAVTLKLQE-----GEQDQQRLAQYV 229
Query: 262 ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 321
I C E DK + L KL L+ K LIF T+D F +KLFLE+FG++ +LN+ELP S
Sbjct: 230 IRCEEDDKFALLCALFKLRLIVGKTLIFVTTVDRCFVVKLFLEQFGVRCCVLNSELPLAS 289
Query: 322 RLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGID 381
R IL +FN G ++ ++A+D ++G V + KK K D E+GV RG+D
Sbjct: 290 RALILNQFNEGRYEIMVASD----------EKGAEVQDKAPKKSKKRNQDPEYGVCRGLD 339
Query: 382 FKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENE 441
F+NV VIN + P Y HR+GRT R G ++SLV E + E ++ + +
Sbjct: 340 FQNVANVINLDFPATVQAYQHRVGRTARGDRKGTALSLVKDREAHLLEAVQKALPE---- 395
Query: 442 DSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVN 501
+ P+ L +E RYR++D ++VT+IAVRE+R ++++ E+L+S+KL++ FE N
Sbjct: 396 --GTLKPY-LFRMEEIEPFRYRSKDAFRAVTRIAVREARLKEIKTEMLSSQKLQSFFEEN 452
Query: 502 PKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGN-KNSSRRQGP 560
P++ LL+HDK L HL+ PDY++ Q + +A K R+
Sbjct: 453 PRERQLLRHDKALHIIKHQPHLKHCPDYIIPPTLQRTLQKEGATKAPQQPVKRPMTREAK 512
Query: 561 RRKF----RKSDPLKSFSAE 576
RK+ R++DPL++FS +
Sbjct: 513 NRKYGKKPRRNDPLQTFSCD 532
>gi|195482299|ref|XP_002101990.1| GE15300 [Drosophila yakuba]
gi|194189514|gb|EDX03098.1| GE15300 [Drosophila yakuba]
Length = 560
Score = 360 bits (925), Expect = 9e-97, Method: Compositional matrix adjust.
Identities = 205/507 (40%), Positives = 309/507 (60%), Gaps = 21/507 (4%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F EL LD R++ A+ + G Q+PTLIQ +IPL+LEGKDVV RA+TGSGKT Y LPL+ +
Sbjct: 11 FHELELDQRILKAVAQLGWQQPTLIQSTAIPLLLEGKDVVVRARTGSGKTATYALPLIQK 70
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+ N S+ +A++L PT+ELC+Q + L+E C V++ + +S+ + R
Sbjct: 71 ILNSKLNASEQCVSAVILAPTKELCRQSRKVIEQLVESCGKVVRVADIAGSSNDTVTQ-R 129
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
ALA PDIV+ATP K L+ S ++ LV+DEADL+ ++GYE D K L
Sbjct: 130 HALAERPDIVVATPA---KLLAHAEAGSVVDLKHVETLVVDEADLVFAFGYEKDFKRLIK 186
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-VQQFWISCSE 266
+P Q +L+SAT + DV ++K L L+NP L L E EV+ ++ + I E
Sbjct: 187 HLPPIYQAVLVSATLTDDVVRMKGLCLNNPVTLKLEE-----PEVVSQDQLTHQRILAEE 241
Query: 267 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
DK + LLKL L++ K++IF N+ID ++++LFLE+FGI++ +LN+ELP N R+H +
Sbjct: 242 NDKPSILYALLKLRLIRGKSIIFVNSIDRCYKVRLFLEQFGIRACVLNSELPANIRIHTI 301
Query: 327 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 386
+FN G +D +IA+D+ ++ GG S ++K P++ D E RGIDF+ V+
Sbjct: 302 SQFNKGTYDIIIASDEHHLEQ-----PGG--KSATNRKSPRSG-DMESSASRGIDFQCVN 353
Query: 387 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD--ENEDSN 444
VINF+ P++ Y+HR GRT R N G+ +S VS E K+ + ++ + D E
Sbjct: 354 NVINFDFPRDVTSYIHRAGRTARGNNKGSVLSFVSMKEAKVNDAVEKKLCDSFAAQEGEQ 413
Query: 445 IIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKD 504
II + + VES RYRA+D ++ T++AV ++R ++++ EILN EKLK FE N +D
Sbjct: 414 IIKNYQFKMEE-VESFRYRAQDCWRAATRVAVHDTRIREIKTEILNCEKLKGFFEENKRD 472
Query: 505 LDLLKHDKDLSKKPPASHLRDVPDYLL 531
L L+HDK L SHL D+P+Y++
Sbjct: 473 LQALRHDKPLRAIKVQSHLSDMPEYIV 499
>gi|170087916|ref|XP_001875181.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650381|gb|EDR14622.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 620
Score = 360 bits (924), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 215/543 (39%), Positives = 313/543 (57%), Gaps = 73/543 (13%)
Query: 45 GIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESS-----PKSKLA 99
G +PTL+Q +IPL LEG+D++ARA+TGSGKT AY +P++ ++ + S + + A
Sbjct: 32 GFARPTLVQAKAIPLALEGRDILARARTGSGKTAAYCVPMVQKILSAKSGLDEEDQRRRA 91
Query: 100 PAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIA 159
AL+LVPTREL +QV + + L+ C + L + R L+ PDIVIA
Sbjct: 92 TRALILVPTRELSEQVSTYMRGLLAYCDKDIIYS--NLATGTTTHLQRTLLSDQPDIVIA 149
Query: 160 TPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL--SAVIPRGCQCLL 217
TP + L+ + S SL LV+DEADL+LSYG++DD++++ S +P+ Q L
Sbjct: 150 TPS---RALALLQSKVLS-LSSLDSLVIDEADLILSYGHDDDIRSIFSSGFLPKVYQSFL 205
Query: 218 MSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLL 277
MSAT + DV+ LK L L NP IL L E DE N+ Q+ + CSE DK L +L
Sbjct: 206 MSATMTEDVEILKGLALRNPAILKLEE-----DEDEAANLSQYAVRCSEVDKFLLTYVIL 260
Query: 278 KLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYL 337
K++L++ K ++F N +D ++RLKLFLE+F IKS +LN+ELP NSR H+++EFN G++DY+
Sbjct: 261 KVKLIKGKCILFVNDVDRSYRLKLFLEQFSIKSCVLNSELPLNSRYHVVQEFNKGVYDYI 320
Query: 338 IATDDTQTKEKDQSDEGGHVDSRKS--KKHPKAKL------------------------- 370
IATD+ + + +DE S++S + P A
Sbjct: 321 IATDEAGARAEYDTDEEVEQASQQSLDTEQPSATTDKGKRKRSNSSPAPSARKTRKRKHR 380
Query: 371 ----DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSP---- 422
D E+GV RG+DF +V V+NF++P ++ Y HR+GRT RA TG S+S V P
Sbjct: 381 KAGGDKEYGVTRGVDFVDVACVLNFDLPTSSRSYTHRVGRTARAGRTGMSLSFVVPRDKW 440
Query: 423 --------------DEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVA 468
DEM +F +I+ ++ + I + + VE+ RYR ED
Sbjct: 441 GKNKVVGCLPSAEQDEM-VFSKIEK----EQGARGSKIKEYQFDMKQ-VEAFRYRMEDAL 494
Query: 469 KSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPD 528
+SVT+ A++E+R ++L+ EILNSEKLKAHFE NP DL+ L+HDK L H++ VP
Sbjct: 495 RSVTRTAIKEARVKELKTEILNSEKLKAHFEDNPLDLEYLRHDKPLHPTRIQPHMKHVPK 554
Query: 529 YLL 531
YLL
Sbjct: 555 YLL 557
>gi|50287517|ref|XP_446188.1| hypothetical protein [Candida glabrata CBS 138]
gi|74691026|sp|Q6FUA6.1|DBP9_CANGA RecName: Full=ATP-dependent RNA helicase DBP9
gi|49525495|emb|CAG59112.1| unnamed protein product [Candida glabrata]
Length = 595
Score = 360 bits (923), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 219/560 (39%), Positives = 316/560 (56%), Gaps = 63/560 (11%)
Query: 19 EAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGK-DVVARAKTGSGKT 77
EA ++ +FE LD RL+ A+ G PTLIQ +IPL LE K D++A+A TGSGKT
Sbjct: 7 EAYIDDSVNFESFKLDARLLQAIKGSGFTHPTLIQSHAIPLALEEKRDIIAKAATGSGKT 66
Query: 78 FAYLLPLLHRLFNESSPKS---KLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKV 134
AYL+P++ + + ++ + +++VPTREL QQV + + LI C + KV
Sbjct: 67 LAYLIPVIQTILDYKKSRTNGDEPGTLGIIMVPTRELTQQVTAVLEKLIHYCSKDI--KV 124
Query: 135 VQLTSSMPASDLRAALAGPPDIVIATPGCMPKCL-----STGVLQSKSFSDSLKILVLDE 189
+ L + + S L L+ P+I++ TP + L + G+ D LK LV+DE
Sbjct: 125 LNLAADLSTSVLNTLLSENPEIIVGTPSKILNILERNTDTVGI-------DDLKFLVIDE 177
Query: 190 ADLLLSYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGD 247
DL+L++GY+DDL ++ +P + Q LMSAT S D+ LK+ +P I+ +
Sbjct: 178 VDLVLTFGYQDDLDKIAEYLPLKKNLQTFLMSATLSDDIQSLKQKYCRSPAIIKFNDDEI 237
Query: 248 VKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFG 307
KD+ + Q+++ E DK L+ + KL L++ K L+F N ID +RLKL LE+FG
Sbjct: 238 NKDKT---KLVQYYVRVGEFDKFLFCYVIFKLGLIKGKTLVFVNNIDRGYRLKLVLEQFG 294
Query: 308 IKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDT-QTKEKD-----------QSDEGG 355
IKS ILN ELP NSR HI+++FN ++ LIATDD KE D ++DE
Sbjct: 295 IKSCILNNELPANSRQHIVDQFNKNVYHLLIATDDADNIKEFDDEQKDDIQVEEKNDETN 354
Query: 356 HVDSR---------KSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGR 406
V + KSK K D E+GV RG+DFKNV V+NF++P A YVHR+GR
Sbjct: 355 TVVAEESTNSTTGIKSKTKNNYKQDKEYGVSRGVDFKNVACVVNFDLPTTAKAYVHRVGR 414
Query: 407 TGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNI--------------IAPFPL- 451
T RA +G ++S V P +K F + K + +D I I P+
Sbjct: 415 TARAGKSGTAISFVVP--LKEFGKHKPSMLPSAKKDEKILSRIIKQQSKLGLEIQPYSFD 472
Query: 452 LAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHD 511
L Q VE RYR ED ++VT++AVRE+R ++L+ E+L SEKLK HFE NP +L L+HD
Sbjct: 473 LKQ--VEGFRYRMEDGFRAVTQVAVREARIKELKEELLASEKLKRHFEENPIELKSLRHD 530
Query: 512 KDLSKKPPASHLRDVPDYLL 531
K+L +HL+ +P+YLL
Sbjct: 531 KELHPARVQNHLKRIPEYLL 550
>gi|345568976|gb|EGX51845.1| hypothetical protein AOL_s00043g579 [Arthrobotrys oligospora ATCC
24927]
Length = 621
Score = 360 bits (923), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 226/622 (36%), Positives = 336/622 (54%), Gaps = 75/622 (12%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF L LD RL+ A+ PT +QQ+ IP LEGKD++ARAKTGSGKT AYLLP+LH
Sbjct: 14 SFTSLPLDPRLLQAIATLNYSTPTPVQQSVIPPALEGKDILARAKTGSGKTAAYLLPILH 73
Query: 87 RLFNESS--------------PKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQL 132
R+ S A AL+LVPTREL QVY + C Q+
Sbjct: 74 RILTSQQDVNNANSNDGEGGSGGSAAATEALILVPTRELADQVYKVIEQYTTFCGKQIT- 132
Query: 133 KVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADL 192
V + ++ S ++ L P IVI+TP +T L +SLK LV+DEADL
Sbjct: 133 -AVNIARNISDSIQQSLLLSHPKIVISTPSRAAIHFNTETLSL----ESLKYLVIDEADL 187
Query: 193 LLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEV 252
+LSYG+E+D++ LS +P+G Q LMSAT + DV+ L+KL +P++ P+ +
Sbjct: 188 ILSYGHENDMQVLSGALPKGIQTFLMSATLTDDVEGLQKLFCRHPFVYK-PDAKEEDGAD 246
Query: 253 IPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAI 312
+ V+QF+IS E K L + + KL+L++ K++IF +D +RL+LFLE+FGI++ +
Sbjct: 247 GAEVVKQFYISTGEDTKFLLLYVIFKLKLIKGKSIIFVADVDRCYRLRLFLEQFGIRACV 306
Query: 313 LNAELPQNSRLHILEEFNAGLFDYLIATDDTQT----------------------KEKDQ 350
LN+ELP NSRLHI++EFN +++ +IATD+ + ++ D
Sbjct: 307 LNSELPVNSRLHIVQEFNKNVYEIIIATDENEIMGDEEEEEEDDDDEVEEGQAAGEDGDT 366
Query: 351 SDEGGHVDSRKSKKHPKA---------KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYV 401
+ EG + K K K D+E+GV RG+DF+NV V+NF++P + Y+
Sbjct: 367 TMEGMESEGNPPPKKKKKSKRKSSTHRKRDTEYGVSRGVDFQNVTCVLNFDLPVTSKSYM 426
Query: 402 HRIGRTGRAYNTGASVSLVSPDEM----------------KIFEEIKSFVGDDENEDSNI 445
HRIGRT RA N+G ++S P + K+ E IK + +
Sbjct: 427 HRIGRTARAGNSGMALSFYVPKPLYGKHRPTSVASSVKDEKVLERIKK----QQAKLGRE 482
Query: 446 IAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDL 505
+ P+ +E+ RYR +D ++VTK+AV+ +R ++LR E++ SEKLK HFE NP+DL
Sbjct: 483 LKPYN-FDMKQLEAFRYRMDDALRAVTKVAVQNARMKELRAELVASEKLKRHFEENPEDL 541
Query: 506 DLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFR 565
L+HD+++ H++ VP+YLL +A M ++ K S R+ R K +
Sbjct: 542 RHLRHDREIKVVRVQQHMKRVPEYLLGKG--KAAGMGLNKGGSVPFKVGSSRKTARGKGK 599
Query: 566 KSDPLKSFSAEPTKRAGKGRMK 587
+ +P K GKGR K
Sbjct: 600 QKGKKVGKRKDPLKSFGKGRKK 621
>gi|71019617|ref|XP_760039.1| hypothetical protein UM03892.1 [Ustilago maydis 521]
gi|74701244|sp|Q4P7M1.1|DBP9_USTMA RecName: Full=ATP-dependent RNA helicase DBP9
gi|46099832|gb|EAK85065.1| hypothetical protein UM03892.1 [Ustilago maydis 521]
Length = 686
Score = 359 bits (921), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 248/658 (37%), Positives = 342/658 (51%), Gaps = 109/658 (16%)
Query: 6 EIPSKEVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKD 65
E+PS +E+AE F + LD RL+ AL G PT IQQ +IPL L GKD
Sbjct: 47 ELPS-------QEDAERLGFNVFSHI-LDPRLLRALADLGYGIPTPIQQKAIPLALAGKD 98
Query: 66 VVARAKTGSGKTFAYLLPLLHRLFNESSPKSK-----LAPAALVLVPTRELCQQVYSEVM 120
++ARA+TGSGKT AY LPLL ++ + S +K ALVLVPTREL +QV+ +
Sbjct: 99 ILARARTGSGKTLAYGLPLLQKVLDAKSAVAKSDANHQLTRALVLVPTRELAEQVFRHLS 158
Query: 121 ALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD 180
+IE + ++L V +S R L+ PD+VIATP L L KS +
Sbjct: 159 VVIEYVRDDIRLVNVAREASEKVQ--RLLLSEKPDVVIATPSKALNYLQNASLDLKSGME 216
Query: 181 SLKILVLDEADLLLSYGYEDDLKAL--SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPY 238
SL I DEADL+LSYG++ D+K+L + +P Q LMSAT +SDV KLK L+L NP
Sbjct: 217 SLAI---DEADLILSYGHDADVKSLLGANFLPSHFQSFLMSATMTSDVSKLKGLLLRNPV 273
Query: 239 ILTLPEVGDVKDEVIP-KNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAF 297
+L L + DE N+ QF+ +E DK L +LKL+L++ KA++F N ++ +
Sbjct: 274 VLKL----NHDDEAASGSNLVQFYTKTTEEDKFLLAYVILKLKLIRGKAILFVNELERGY 329
Query: 298 RLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD---------------- 341
RLKLFLEKFG+++ +LNAELP NSR I+EEFN G FDY++ATD
Sbjct: 330 RLKLFLEKFGLRACVLNAELPINSRYSIVEEFNKGKFDYIVATDEPTGASGNMQDDEGDD 389
Query: 342 -------------DTQT--------KEKDQSDEGGHVDSRKSK--KHPKAKLD-SEFGVV 377
D Q K K G S KSK +H K K SE+GV
Sbjct: 390 EEEDADEREADEVDEQAEDQREAGKKRKSSEHAGAETKSNKSKVSQHRKGKNGASEYGVS 449
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RG+DF NV VINF++P + Y+HR+GRT R +G ++S V P + ++ +
Sbjct: 450 RGVDFINVSCVINFDLPTSVDSYIHRVGRTARGGASGTALSFVVPSD-QVGRSKYLYCAS 508
Query: 438 DENEDS-----NIIAPFPLLA---------QNAVESLRYRAEDVAKSVTKIAVRESRAQD 483
++S N + LL ++V YR D KS+TK +RE+R ++
Sbjct: 509 TTRDESVFKMLNKPSTISLLGSALQEWKYDSSSVAGFHYRVTDTLKSITKALIREARIKE 568
Query: 484 LRNEILNSEKLKAHFEVNPKDLDLLKHDKD-LSKKPPASHLRDVPDYLLDAKTQEACKMV 542
L+NEIL S KL++HFE +P DL L+HDK L+ + SHL+ VP YL+ K+
Sbjct: 569 LKNEILTSSKLQSHFEDHPDDLAFLQHDKALLTSRAQQSHLKHVPQYLVPKIINPGAKLT 628
Query: 543 KLA--------------------------RAAMGNKNSSRRQGPRRKFRKSDPLKSFS 574
K + R + KN++ G RK K DPL+ FS
Sbjct: 629 KSSGSEYKGYVPKNKIKDGANDRKNKGGKRRSSTGKNTTGAAGKSRK--KVDPLRKFS 684
>gi|195173765|ref|XP_002027657.1| GL15985 [Drosophila persimilis]
gi|198470361|ref|XP_001355297.2| GA14086 [Drosophila pseudoobscura pseudoobscura]
gi|194114592|gb|EDW36635.1| GL15985 [Drosophila persimilis]
gi|198145414|gb|EAL32354.2| GA14086 [Drosophila pseudoobscura pseudoobscura]
Length = 558
Score = 358 bits (919), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 212/543 (39%), Positives = 325/543 (59%), Gaps = 26/543 (4%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F EL LD R++ A++K G ++PTLIQ +IPL+LEGKDVV RA+TGSGKT Y LPL+ +
Sbjct: 10 FHELELDHRILKAVSKLGWEQPTLIQGTAIPLLLEGKDVVVRARTGSGKTATYALPLIQK 69
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+ N ++ +A+VL PT+ELC+Q + + L E C V++ + T+S ++ R
Sbjct: 70 ILNSKLTATEQCVSAVVLAPTKELCRQSRAVIEQLAEYCHKVVRVADISGTTSNTVTE-R 128
Query: 148 AALAGPPDIVIATPG-CMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
ALA PDIV+ATP + + GV+ K ++ LV+DEADL+ ++GYE D KAL
Sbjct: 129 HALAERPDIVVATPAKLLNHAKADGVVDLK----KVETLVVDEADLIFAFGYEMDFKALL 184
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
+P Q +L+SAT S DV ++K L LHNP L L E D V + I E
Sbjct: 185 KHLPSIYQSVLVSATLSDDVVRMKGLCLHNPVTLKLEE----PDVVSQDQLTHQRILAEE 240
Query: 267 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
DK + + LLKL+L++ K +IF NTID +++++LFLE+FGI++ +LN +LP + R++++
Sbjct: 241 NDKPVILYALLKLQLIRGKTIIFVNTIDRSYKIRLFLEQFGIRACVLNPQLPASIRINMI 300
Query: 327 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 386
+FN G +D +IA+D + D G D RKS + D E RGIDF++V+
Sbjct: 301 SQFNKGTYDIIIASDQHYLERPD----NGSQDKRKSTRG-----DFESSASRGIDFQSVN 351
Query: 387 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI--KSFVGDDENEDSN 444
VINF+ P + Y+HR GRT R N G+ +SLVS E + + + K + +
Sbjct: 352 NVINFDFPLDVTSYIHRAGRTARGNNKGSVLSLVSIKESGVNDAVEKKLRITFSAKKGDT 411
Query: 445 IIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKD 504
II + + +ES RYRA D ++ ++ AV+E+R ++++ E+LNS KLK +FE + +D
Sbjct: 412 IIKNYQ-FKMDELESFRYRAYDAWRAASRAAVQETRLREIKTEVLNSVKLKGYFEDHQRD 470
Query: 505 LDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKF 564
L+ L+HDK L SHL D+P+Y++ + K V +++A+ SS + PR+
Sbjct: 471 LNALRHDKPLRILKTPSHLSDMPEYMV----PKVLKRVVVSKASGPADESSDAKRPRQTA 526
Query: 565 RKS 567
K+
Sbjct: 527 AKA 529
>gi|397565637|gb|EJK44705.1| hypothetical protein THAOC_36732 [Thalassiosira oceanica]
Length = 698
Score = 358 bits (919), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 224/597 (37%), Positives = 326/597 (54%), Gaps = 59/597 (9%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPL-ILEGKDVVARAKTGSGKTFAYLLPLLHRLF 89
+G+D RL AL++ PTL+Q SIPL + G+D++ RA+TGSGKT AY +P
Sbjct: 25 VGIDPRLRKALSRLNYVHPTLVQSRSIPLAVTSGRDLLVRARTGSGKTVAYCVPAGIDGD 84
Query: 90 NESSPKSKL-----APAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
++ A ++LVPTRELC QV + L C V+ V+ S +
Sbjct: 85 GGGDDETDGGGGGAAVRGVILVPTRELCNQVAQVLNDLTYYCADVVRTVVLSSKGSKGSK 144
Query: 145 DLRAA-------LAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYG 197
AA L PDIV+ATP + + G+L K S++ LV+DEADL+LS+G
Sbjct: 145 RRDAATLQQEALLRDRPDIVVATPAGLVANVRAGLLDLKR---SVETLVVDEADLILSFG 201
Query: 198 YEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEV-GDVKDEVIPKN 256
Y DD+ + +PR CQ LMSAT S +++KLK ++LH+P +L L E G N
Sbjct: 202 YADDVTEIMKALPRTCQGFLMSATISPELNKLKGVVLHSPAVLKLEEDDGAELANAREGN 261
Query: 257 VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAE 316
+ QF++ +D+ L + LKL L++ K L F N+ID +RLKLFLE+F I+SA+LN+E
Sbjct: 262 LMQFYLDLPSKDRYLLVYVFLKLGLLRGKGLFFVNSIDGGYRLKLFLEQFHIRSAVLNSE 321
Query: 317 LPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEG------GHVDSRKSKKHPKAKL 370
LP SRL+I+E FN G FDYLIATD+ + +E + +K K +
Sbjct: 322 LPLKSRLNIIEHFNVGNFDYLIATDEATHRRSRSENESGGGGGDDGGRKKSRRKSEKRRR 381
Query: 371 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE 430
D E+G RG+DF+ V V+NF+MP N Y HRIGRT R +G +++LV + + EE
Sbjct: 382 DGEYGASRGLDFRGVSFVVNFDMPPNPESYTHRIGRTARGGASGVALTLV---DGSVAEE 438
Query: 431 IKSFVGDDENEDSNIIA-----------------------------PFPL-LAQNAVESL 460
++ + E++ S A P PL +E
Sbjct: 439 AETLLDIQESQPSRSAAGSGDGELREAADDGAGMEGSGVHPQVQAQPGPLEFDLKEIEGF 498
Query: 461 RYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPA 520
RYR EDV ++VT++AV+E+RA +++ EILNSE+L+AHFE NP DL LL+HD+ +
Sbjct: 499 RYRVEDVNRAVTRVAVKETRAAEVKAEILNSERLQAHFEANPADLQLLQHDRQATHVSKV 558
Query: 521 -SHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSFSAE 576
SHL++VP YLL Q A V R ++ R R++ + +DPL++F +
Sbjct: 559 QSHLKNVPGYLLPRGMQVAN--VSRKRRKKKTRSQQRAAAGRQRNKSNDPLQTFDGD 613
>gi|295674119|ref|XP_002797605.1| ATP-dependent RNA helicase DBP9 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226280255|gb|EEH35821.1| ATP-dependent RNA helicase DBP9 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 607
Score = 358 bits (919), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 216/556 (38%), Positives = 304/556 (54%), Gaps = 82/556 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SFE L LD RL+ AL + KPTLIQ +IPL L+GKDV+
Sbjct: 25 SFESLNLDPRLLQALTAQKFTKPTLIQAKAIPLALDGKDVLG------------------ 66
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
+ N+ + K A AL+LVPTREL +QV V + + + LT + +
Sbjct: 67 -VLNDPTNK---AVQALILVPTRELAEQVQKVVASFCAFAGKNI--RSANLTQKVSDAVQ 120
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
R+ LA PD+VI+TPG +++ L + L LV+DEADL+LSYGYE D++ L+
Sbjct: 121 RSILADLPDVVISTPGRAVVNINSSALSL----ERLAHLVIDEADLVLSYGYEQDMQNLA 176
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
+PRG Q LMSAT SS+VD LK L NP IL L E D + QF + C+E
Sbjct: 177 KAVPRGVQTFLMSATFSSEVDTLKGLFCRNPVILKLEEKDDEG-----AGISQFVVRCAE 231
Query: 267 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
+K L + KL+LV+ K +IF +D +RLKLFLE+FGI+S +LN+ELP NSR+H++
Sbjct: 232 DEKFLLTYVIFKLQLVKGKCIIFVGDVDRCYRLKLFLEQFGIRSCVLNSELPVNSRIHVV 291
Query: 327 EEFNAGLFDYLIATDDTQT---------KEKDQSDE----GGHVDSRK------------ 361
+EFN G++D +IA DD + K +SDE G DS +
Sbjct: 292 QEFNKGVYDIIIAADDQEVLGELPKKSKKPNRKSDEAPKGAGQEDSEENSDTKTSKDGAQ 351
Query: 362 -----------SKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRA 410
SK+H K+ + ++G+ RGIDF++V V+NF++P A Y HRIGRTGRA
Sbjct: 352 DSSDEEVQEHPSKRHKKSVKEKDYGISRGIDFQDVACVLNFDLPTTAKSYTHRIGRTGRA 411
Query: 411 YNTGASVSLVSPDEMKIFEEIKSFVGDDENE------------DSNIIAPFPLLAQNAVE 458
TG ++S V P + SF +E + P+ + VE
Sbjct: 412 GKTGMALSFVVPSNQFGKHKPTSFPSAKRDEAVLAKITKRQVKAGQEVKPYHFEMKQ-VE 470
Query: 459 SLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKP 518
+ RYR D ++VT+IAV+E+RA+++R E+L SEKLK HFE NP++L L+HD +L
Sbjct: 471 AFRYRMSDALRAVTRIAVQEARAREIRQELLKSEKLKRHFEENPEELRQLRHDGELRAAR 530
Query: 519 PASHLRDVPDYLLDAK 534
+HL+ VPDYL+ K
Sbjct: 531 VQAHLKHVPDYLMPTK 546
>gi|325191602|emb|CCA25813.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
Length = 654
Score = 358 bits (918), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 231/599 (38%), Positives = 337/599 (56%), Gaps = 69/599 (11%)
Query: 25 EKSFEE--LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLL 82
+++F+E GLD RL+ A K TL+Q IPL L+GKD++ RA+TGSGKT A+ L
Sbjct: 11 KQTFQERDFGLDQRLIKATQKLNYTHATLVQVHCIPLALQGKDLIVRARTGSGKTAAFAL 70
Query: 83 PLLHRLF-----NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQL 137
PLLH++ SS S+ A++LVPTREL QV ++ L+ C+ ++ L +
Sbjct: 71 PLLHKILMHKESEASSTGSRSVTQAIILVPTRELVDQVREQLWNLMHYCRNRISLLAL-- 128
Query: 138 TSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYG 197
+ S +A L PDI+I+TPG + L G + + L++DEADL+LS+G
Sbjct: 129 -TGQSMSIQQALLRDAPDILISTPGRIVSHLEAGYFDPAN----IHSLIIDEADLILSFG 183
Query: 198 YEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNV 257
+ DL ++ +P+ Q L MSAT S D+ LKK + HN IL L E EV +
Sbjct: 184 SKSDLCSIFDHLPKAIQILCMSATLSPDLRALKKSVFHNAAILKLEE------EVTDGKL 237
Query: 258 QQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAEL 317
QQF++ +DK L + LLKL L+ K L F N A+RLKLF E+F IKSA+LNAE+
Sbjct: 238 QQFYLRIPPKDKELLLYALLKLGLLHGKILFFVNVTASAYRLKLFFEQFHIKSAVLNAEM 297
Query: 318 PQNSRLHILEEFNAGLFDYLIATDDTQTKE---------------------------KDQ 350
P NSR HIL+E+N GLFD LIATD++ E +D+
Sbjct: 298 PHNSRKHILQEYNRGLFDNLIATDESVEAEDEDVPLDDEDVPLDDEDVPLEVEDVPQEDE 357
Query: 351 SDEGGHVDS-----RKSKKHPKA-----KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGY 400
SDE + D +K P++ + D+ +GV RG+DF V V+N + PQ+A Y
Sbjct: 358 SDEESNDDQLGDDFNHDQKVPESTNKSRQQDALYGVSRGVDFSGVKFVVNVDFPQSARSY 417
Query: 401 VHRIGRTGRAYNTGASVSLVSPD---EMKIFEEIKSFVGDDENEDSNII-APFPL-LAQN 455
+HRIGRT R G ++S+VS D E K +++++ +++I P PL +
Sbjct: 418 IHRIGRTARGNECGTALSIVSSDCQKEAKTLDKLQAKQQPLITPSNDLIKQPAPLSFDLH 477
Query: 456 AVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLS 515
++ RYR EDV ++VT+IAVRE++ D++ EILNSEKL +HFE NP+DL++L+HDK +
Sbjct: 478 EIDRFRYRVEDVQRAVTRIAVREAQLADIKKEILNSEKLASHFEANPRDLNVLQHDKTIG 537
Query: 516 KKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSFS 574
K HL +PDYL+ Q V ++ + +++ G RR +DPL SF+
Sbjct: 538 KARIQPHLATIPDYLVPIGLQ-----VAPSKPTRKKQRTTKTNGKRRT--DNDPLHSFT 589
>gi|380091313|emb|CCC11170.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 680
Score = 357 bits (915), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 216/553 (39%), Positives = 324/553 (58%), Gaps = 52/553 (9%)
Query: 10 KEVKQAEEEEAEAEEEK---SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDV 66
K+ K E+++ E E + +F +LGLD RLV A+ K+ +KPTL+Q+ +IPL L G+DV
Sbjct: 88 KKNKSQEDQKKENENDDADLTFSDLGLDPRLVQAVAKQSFEKPTLVQRKAIPLALAGQDV 147
Query: 67 VARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELC 126
+ +A TGSGKT AY+LP+L + + S +AL+LVPTREL QV+ + A C
Sbjct: 148 LCKANTGSGKTAAYVLPVLSGILKRKATDSAPFTSALILVPTRELADQVHKAIDAFSAFC 207
Query: 127 KGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILV 186
+Q +LT ++ + LR+ LA PD++++TP + +G L L+ LV
Sbjct: 208 TKDIQ--SAKLTDNVSDAVLRSLLANAPDVIVSTPARAWHNIESGALSVA----KLQYLV 261
Query: 187 LDEADLLLSYGYEDDLKALSAVIPR-GCQCLLMSATSSSD-VDKLKKLILHNPYILTLPE 244
LDEADL+LSYGY++D++ ++ +P+ G Q +MSAT SD +D LK NP +L L E
Sbjct: 262 LDEADLVLSYGYDEDMENIARSLPKGGVQTTMMSATLVSDELDTLKGFFCRNPTMLDLKE 321
Query: 245 VGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLE 304
+DE + QF++ C E DK L + KL+L++ L+F ID A+RLKLF E
Sbjct: 322 SFSAEDE----KLTQFYVKCGEDDKWLISYLIFKLQLIKGPCLVFVADIDRAYRLKLFFE 377
Query: 305 KFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD-----------TQTKEKDQSDE 353
+F I+S +LN+ELP N+R+ I+EEFN G++D +IA+D+ T+ K + + D
Sbjct: 378 QFSIRSCVLNSELPINTRIKIIEEFNRGIYDIIIASDERSEVFLEDEKKTEEKAEKKEDG 437
Query: 354 GGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNT 413
K K + D E+GV RGIDFKNV VINF+MP +++ Y+HRIGRT RA
Sbjct: 438 EDKDKKSGKGKKKKGRRDQEYGVSRGIDFKNVAAVINFDMPTSSSSYIHRIGRTARAGRA 497
Query: 414 GASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA--------------PFPLLAQNAVES 459
G ++S+V P ++ F + K +D ++A P+ ++ +E+
Sbjct: 498 GIALSMVVPHDL--FGKHKPTSIKQCEKDEKVLAKVMRQQAKLNRKLEPYN-FNKDQMEA 554
Query: 460 LRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDL-SKKP 518
RYR D A+RE+R ++LR E++ SE LK +FE NP +L L+HD +L +K
Sbjct: 555 FRYRMND--------AIREARTRELRQELMRSETLKRYFEENPNELSHLRHDGELGTKMR 606
Query: 519 PASHLRDVPDYLL 531
+HL+ VPDYLL
Sbjct: 607 QQAHLKHVPDYLL 619
>gi|336266016|ref|XP_003347778.1| hypothetical protein SMAC_03876 [Sordaria macrospora k-hell]
Length = 680
Score = 357 bits (915), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 216/553 (39%), Positives = 324/553 (58%), Gaps = 52/553 (9%)
Query: 10 KEVKQAEEEEAEAEEEK---SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDV 66
K+ K E+++ E E + +F +LGLD RLV A+ K+ +KPTL+Q+ +IPL L G+DV
Sbjct: 88 KKNKSQEDQKKENENDDADLTFSDLGLDPRLVQAVAKQSFEKPTLVQRKAIPLALAGQDV 147
Query: 67 VARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELC 126
+ +A TGSGKT AY+LP+L + + S +AL+LVPTREL QV+ + A C
Sbjct: 148 LCKANTGSGKTAAYVLPVLSGILKRKATDSAPFTSALILVPTRELADQVHKAIDAFSAFC 207
Query: 127 KGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILV 186
+Q +LT ++ + LR+ LA PD++++TP + +G L L+ LV
Sbjct: 208 TKDIQ--SAKLTDNVSDAVLRSLLANAPDVIVSTPARAWHNIESGALSVA----KLQYLV 261
Query: 187 LDEADLLLSYGYEDDLKALSAVIPR-GCQCLLMSATSSSD-VDKLKKLILHNPYILTLPE 244
LDEADL+LSYGY++D++ ++ +P+ G Q +MSAT SD +D LK NP +L L E
Sbjct: 262 LDEADLVLSYGYDEDMENIARSLPKGGVQTTMMSATLVSDELDTLKGFFCRNPTMLDLKE 321
Query: 245 VGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLE 304
+DE + QF++ C E DK L + KL+L++ L+F ID A+RLKLF E
Sbjct: 322 SFSAEDE----KLTQFYVKCGEDDKWLISYLIFKLQLIKGPCLVFVADIDRAYRLKLFFE 377
Query: 305 KFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD-----------TQTKEKDQSDE 353
+F I+S +LN+ELP N+R+ I+EEFN G++D +IA+D+ T+ K + + D
Sbjct: 378 QFSIRSCVLNSELPINTRIKIIEEFNRGIYDIIIASDERSEVFLEDEKKTEEKVEKKEDG 437
Query: 354 GGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNT 413
K K + D E+GV RGIDFKNV VINF+MP +++ Y+HRIGRT RA
Sbjct: 438 EDKDKKSGKGKKKKGRRDQEYGVSRGIDFKNVAAVINFDMPTSSSSYIHRIGRTARAGRA 497
Query: 414 GASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA--------------PFPLLAQNAVES 459
G ++S+V P ++ F + K +D ++A P+ ++ +E+
Sbjct: 498 GIALSMVVPHDL--FGKHKPTSIKQCEKDEKVLAKVMRQQAKLNRKLEPYN-FNKDQMEA 554
Query: 460 LRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDL-SKKP 518
RYR D A+RE+R ++LR E++ SE LK +FE NP +L L+HD +L +K
Sbjct: 555 FRYRMND--------AIREARTRELRQELMRSETLKRYFEENPNELSHLRHDGELGTKMR 606
Query: 519 PASHLRDVPDYLL 531
+HL+ VPDYLL
Sbjct: 607 QQAHLKHVPDYLL 619
>gi|195399387|ref|XP_002058302.1| GJ15568 [Drosophila virilis]
gi|194150726|gb|EDW66410.1| GJ15568 [Drosophila virilis]
Length = 564
Score = 356 bits (914), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 220/579 (37%), Positives = 322/579 (55%), Gaps = 44/579 (7%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F EL LD R++ A+ + G +PTLIQ +IPL+LEGKDVV RA+TGSGKT Y LPL+ +
Sbjct: 10 FHELELDQRILKAIAQLGWVQPTLIQSTAIPLLLEGKDVVVRARTGSGKTATYALPLIQK 69
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+ N S+ +ALVL PT+ELC+Q + L E C V++ + +S+ A+ R
Sbjct: 70 ILNSKMNASEQRVSALVLCPTKELCRQSRQVIEQLAESCGKVVRVADIAGSSNDVATQ-R 128
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
ALA PDIV+ATP + LQ ++ LV+DEADL+ ++GYE D K L
Sbjct: 129 HALAERPDIVVATPSKLLAHADVVDLQ------HIETLVVDEADLIFAFGYEKDFKRLIK 182
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 267
+P Q +L+SAT S DV ++K L LHN L L E D V + I E
Sbjct: 183 HLPPIYQAVLVSATISDDVARMKGLCLHNAVTLKLEE----PDLVSLDQLSHQRILAEEN 238
Query: 268 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 327
DK + LLKL L+Q K++IF N +D ++++LFLE+FGI+S +LN+ELP N R+H +
Sbjct: 239 DKPAILCALLKLTLIQGKSIIFVNNVDRCYKVRLFLEQFGIRSCVLNSELPANIRIHTIS 298
Query: 328 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 387
+FN G++D +IA+D+ EK K K++ D E RGIDF+ V+
Sbjct: 299 QFNRGVYDIIIASDE-HLLEKPAG----------QKAKDKSQRDHESSASRGIDFQGVNN 347
Query: 388 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS----PDEMKIFEEIKSFVGDDENEDS 443
VINF+ P++ Y+HR GRT R N G+ +S VS P + E ++ +G + +
Sbjct: 348 VINFDFPRDVTSYIHRAGRTARGNNKGSVLSFVSIKELPVNQAVEERLRCSLGKEPHLTV 407
Query: 444 NIIAPFP------------LLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNS 491
+ ++ P VE+ RYRA+D ++ T++AV ++R ++++NEILN
Sbjct: 408 DALSDEPQKPAVEDIIKLYQFKMEEVEAFRYRAQDCWRAATRVAVHDTRIREIKNEILNC 467
Query: 492 EKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGN 551
EKLK FE N +DL L+HDK SHL VPDY+L + A K V LAR
Sbjct: 468 EKLKGFFEENKRDLLALRHDKPARTIKVQSHLAHVPDYILPS----ALKRVALARPNTLA 523
Query: 552 KNSSRRQGPRRKFRK--SDPLKSFSAEPTKRAGKGRMKR 588
+R G + +++ +DPL + KR G + ++
Sbjct: 524 AKQTRTTGAKSAYQRQSNDPLMVSEVDYGKRRGAPKRRK 562
>gi|385305572|gb|EIF49536.1| atp-dependent rna helicase dbp9 (dead-box protein 9) [Dekkera
bruxellensis AWRI1499]
Length = 564
Score = 356 bits (913), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 226/577 (39%), Positives = 334/577 (57%), Gaps = 49/577 (8%)
Query: 22 AEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGK-DVVARAKTGSGKTFAY 80
+E+ SFE L LD RL+ A+NK G + PTL+Q SI L LE K D++ARA TGSGKT AY
Sbjct: 10 VDEDVSFESLHLDPRLIQAINKLGYEHPTLVQTQSIKLSLEDKKDIIARASTGSGKTAAY 69
Query: 81 LLPLLHRLFN--ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLT 138
+P++ + E S S+ A++LVPT+EL +QV + L C +V+L + T
Sbjct: 70 CIPIIQSILTDKEGSRSSEHXTKAIILVPTKELSKQVSDFLNDLCVFCSKEVRL--LNAT 127
Query: 139 SSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGY 198
S+ L + + P+I+I+TP + ++ +F+D LK V+DE DL++SYGY
Sbjct: 128 ESLGDDLLNSLVDEHPEIIISTPSKLVSIFENH--KNLTFAD-LKYFVIDEVDLVVSYGY 184
Query: 199 EDDLKALS---AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK 255
DDL+ LS + +G Q +MSAT + DVD LKK P +L L +V + K
Sbjct: 185 NDDLEKLSDQYLNMKQGVQVFMMSATLNEDVDALKKRFCTKPAVLRLQDVSEDN-----K 239
Query: 256 NVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNA 315
+++Q++I E DK L I +LKL L++ K LIF N +D +RLKL+L+ FGI+S ILN+
Sbjct: 240 DLRQYYIKTGELDKFLLIYVILKLNLIKGKILIFVNDLDRGYRLKLYLQNFGIRSCILNS 299
Query: 316 ELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFG 375
ELP NSRLHI+E+FN ++ LIATD ++ E+D + KK K+ ++G
Sbjct: 300 ELPLNSRLHIVEQFNKNVYHLLIATD--ESNEQDAE-------DKDEKKSSKSSKKXDYG 350
Query: 376 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLV--------------- 420
V RG+DFKNV V+NF++P ++ Y+HR+GRT RA +G S+S V
Sbjct: 351 VSRGVDFKNVACVLNFDLPTSSRAYIHRVGRTARAGKSGISLSFVVDAKEWGKHRASSLA 410
Query: 421 -SPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRES 479
+ + K+ E I+ + + + P+ + +++ RYR ED +S+T+ A+RE+
Sbjct: 411 TARKDEKVMERIRR----AQTKLGYELEPYQF-DKAQLDNFRYRMEDSFRSITRAAIREA 465
Query: 480 RAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL---DAKTQ 536
R ++++ E++ SEKLK HFE NP+DL L+HDK +SK +L+DVPDYLL K
Sbjct: 466 RLREIKMELITSEKLKRHFEENPEDLATLRHDKAVSKVRSDQNLKDVPDYLLPKAARKNP 525
Query: 537 EACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSF 573
V R+ + R G K RK DPLK F
Sbjct: 526 SQVGFVPFNRSNGRKRRRGGRNGKDWKKRKVDPLKKF 562
>gi|225684674|gb|EEH22958.1| ATP-dependent RNA helicase dbp9 [Paracoccidioides brasiliensis
Pb03]
Length = 885
Score = 355 bits (912), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 213/556 (38%), Positives = 305/556 (54%), Gaps = 82/556 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SFE L LD RL+ AL + KPTLIQ +IPL L+GKDV+
Sbjct: 303 SFESLNLDPRLLQALTAQKFTKPTLIQAEAIPLALDGKDVLG------------------ 344
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
+ ++ + + A AL+LVPTREL +QV V + + + LT + +
Sbjct: 345 -VLDDPTNR---AVQALILVPTRELAEQVQKVVASFCAFAGKNI--RSANLTQKVSDAVQ 398
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
R+ LA PD+VI+TPG +++ L + L LV+DEADL+LSYGYE D++ L+
Sbjct: 399 RSILADLPDVVISTPGRAVVNINSSALSL----ERLAHLVIDEADLVLSYGYEQDMQNLA 454
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
+PRG Q LMSAT SS+VD LK L NP IL L E D + QF + C+E
Sbjct: 455 KAVPRGVQTFLMSATFSSEVDTLKGLFCRNPVILKLEEKDDEG-----AGISQFVVRCAE 509
Query: 267 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
+K L + KL+LV+ K +IF +D +RLKLFLE+FGI+S +LN+ELP NSR+H++
Sbjct: 510 DEKFLLTYVIFKLQLVKGKCIIFVGDVDRCYRLKLFLEQFGIRSCVLNSELPVNSRIHVV 569
Query: 327 EEFNAGLFDYLIATDDTQT---------KEKDQSDE--GG-------------------- 355
+EFN G++D +IA DD + K +SDE GG
Sbjct: 570 QEFNKGVYDIIIAADDQEVLGELPKKSKKPNRKSDEAPGGAGQEDSEENPDTKTSKDGAQ 629
Query: 356 -----HVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRA 410
V SK+H K+ + ++G+ RGIDF++V V+NF++P A Y HRIGRTGRA
Sbjct: 630 DSSDEEVQEHPSKRHKKSVKEKDYGISRGIDFQDVACVLNFDLPTTAKSYTHRIGRTGRA 689
Query: 411 YNTGASVSLVSPDEM------------KIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVE 458
TG ++S V P K E + + + + + + P+ + VE
Sbjct: 690 GKTGMALSFVVPSNQFGKHKPTSFPSAKRDEAVLAKITKRQAKAGQEVKPYHFEMKQ-VE 748
Query: 459 SLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKP 518
+ RYR D ++VT+IAV+E+RA+++R E+L SEKLK HFE NP++L L+HD +L
Sbjct: 749 AFRYRMSDALRAVTRIAVQEARAREIRQELLKSEKLKRHFEENPEELRQLRHDGELRAAR 808
Query: 519 PASHLRDVPDYLLDAK 534
+HL+ VPDYL+ K
Sbjct: 809 VQAHLKHVPDYLMPTK 824
>gi|194763885|ref|XP_001964063.1| GF21359 [Drosophila ananassae]
gi|190618988|gb|EDV34512.1| GF21359 [Drosophila ananassae]
Length = 567
Score = 355 bits (911), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 206/518 (39%), Positives = 309/518 (59%), Gaps = 22/518 (4%)
Query: 21 EAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAY 80
+A+ F EL LD R++ A+ + G Q+PTLIQ +IPL+LEGKDVV RA+TGSGKT Y
Sbjct: 4 KAQTAVQFHELELDQRILKAVAQLGWQQPTLIQSTAIPLLLEGKDVVVRARTGSGKTATY 63
Query: 81 LLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLT-S 139
LPL+ ++ N S+ +A+VL PT+ELC+Q + + L E C G+V ++V + S
Sbjct: 64 ALPLIQKILNSKLNASEQCVSAVVLAPTKELCRQSRAVIEQLAESC-GKV-IRVADIAGS 121
Query: 140 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE 199
S A+ R ALA PDIV++TP + G + + ++ LV+DEADL+ ++GYE
Sbjct: 122 SSDAATQRHALAERPDIVVSTPSKLLNHADAGGVVDLKYVET---LVVDEADLMFAFGYE 178
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-VQ 258
D K L P Q +L+SAT S DV ++K L L+NP L L E E++P++ +
Sbjct: 179 KDFKKLIKHFPPIYQAILVSATLSDDVVRMKGLCLNNPVTLKLEE-----PELVPQDQLT 233
Query: 259 QFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELP 318
I E DK + LLKL LV+ K +IF N ID ++++LFLE+FGI++ +LN+ELP
Sbjct: 234 HQRILAEENDKPAILYALLKLRLVRGKTIIFVNNIDRCYKVRLFLEQFGIRACVLNSELP 293
Query: 319 QNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVR 378
N R+H + +FN G +D +IA+D+ ++ S +K P++ D E R
Sbjct: 294 ANIRIHTISQFNKGTYDIIIASDEHHLEQPGGKSSAASSSSSGKRKSPRSG-DFESSASR 352
Query: 379 GIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK-----S 433
GIDF+ V+ V+NF+ P++ Y+HR GRT R N G+ +S VS E + + ++ +
Sbjct: 353 GIDFQCVNNVLNFDFPRDVTSYIHRAGRTARGNNKGSVLSFVSMKEAAVNDAVEKKLHST 412
Query: 434 FVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEK 493
F E II + + VES RYRA+D ++ T++AV ++R ++++ EILN EK
Sbjct: 413 FAA---QEGEQIIKNYQFKMEE-VESFRYRAQDCWRAATRVAVHDTRIREIKTEILNCEK 468
Query: 494 LKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 531
LK FE N +DL L+HDK L +HL D+PDY++
Sbjct: 469 LKGFFEENKRDLQALRHDKPLKTIKVQNHLSDMPDYIV 506
>gi|213409936|ref|XP_002175738.1| ATP-dependent RNA helicase dbp9 [Schizosaccharomyces japonicus
yFS275]
gi|212003785|gb|EEB09445.1| ATP-dependent RNA helicase dbp9 [Schizosaccharomyces japonicus
yFS275]
Length = 563
Score = 354 bits (909), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 219/568 (38%), Positives = 319/568 (56%), Gaps = 29/568 (5%)
Query: 22 AEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYL 81
E +SF LD RL+ A+ K G + PTL+Q +IPL L+G D++ RA+TGSGKT +YL
Sbjct: 6 TEGHQSFASFELDPRLLRAIEKNGFETPTLVQSKAIPLALKGHDLLVRARTGSGKTASYL 65
Query: 82 LPLLHRLFNESSPKSKLAPA--ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTS 139
+P++ ++ + KS L+LVPTREL QQV + L C ++ L S
Sbjct: 66 IPIIEQILRKKESKSLTTGGILGLILVPTRELAQQVMKVLEKLTAFCSKNIRF--TNLAS 123
Query: 140 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE 199
++ + + L PD+VIATP ++ G + + L LV+DEADL+ S+GY+
Sbjct: 124 NVSTAVQKPLLLDLPDLVIATPSRAVAHITAGNMSL----NELLYLVIDEADLVFSFGYK 179
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
DD+ L+ +P+GCQ LMSAT + + D LK L+ NP L L E + Q
Sbjct: 180 DDIVTLTKSLPQGCQSFLMSATLNDNTDSLKGLVCRNPVTLKLEE------SEAEGQLTQ 233
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+ + C E++K L L KL L++ K L+F N ID +RLKLFLE+FGIKS +LN+ELP
Sbjct: 234 YVVKCGEQEKFLLAYVLFKLSLIKGKILVFVNEIDRCYRLKLFLEQFGIKSLVLNSELPI 293
Query: 320 NSRLHILEEFNAGLFDYLIATD----DTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFG 375
N+R+HI+++FN GL+ +IA D D + E+ + E S +SKK K D E+G
Sbjct: 294 NTRMHIVDQFNKGLYQIIIAADEGERDDEGVEEQANTETEAQSSGESKKSKHGKKDKEYG 353
Query: 376 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSP-DEM-KIFEEIKS 433
V RG+DF++V V+NF+MP Y+HR+GRT RA G S+S V P +E+ K +
Sbjct: 354 VARGLDFEDVACVLNFDMPTTTKSYIHRVGRTARAGKPGISLSFVVPKNEVGKHRPTTLA 413
Query: 434 FVGDDEN-----EDSNI-IAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNE 487
DE E I +AP+ + ++ +YR ED +SVT++AV+E+R +L+ E
Sbjct: 414 SCKKDERVLHRLEKKGIELAPYK-FNKEQTQAFQYRMEDALRSVTRVAVQEARTAELKQE 472
Query: 488 ILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPAS--HLRDVPDYLLDAKTQEACKMVKLA 545
IL SEKLK++F NP DL L HD S + + HL+ VPDYLL Q V
Sbjct: 473 ILASEKLKSYFSENPDDLVSLTHDTAASVRMARTQKHLKHVPDYLLPKGKQAVAAEVGFV 532
Query: 546 RAAMGNKNSSRRQGPRRKFRKSDPLKSF 573
N ++ R ++ DPL++
Sbjct: 533 PYTKQNGRKHVQRSRTRGKQRYDPLRTM 560
>gi|343424963|emb|CBQ68500.1| probable ATP dependent RNA helicase of the DEAD-box family
[Sporisorium reilianum SRZ2]
Length = 653
Score = 354 bits (908), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 229/570 (40%), Positives = 325/570 (57%), Gaps = 64/570 (11%)
Query: 6 EIPSKEVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKD 65
E+PS +EEAE F + LD RL+ AL G PT IQQ +IPL L GKD
Sbjct: 40 ELPS-------QEEAERLGFNVFSHI-LDPRLLRALADLGYGIPTPIQQKAIPLALAGKD 91
Query: 66 VVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPA-----ALVLVPTRELCQQVYSEVM 120
++ARA+TGSGKT AY LPLL ++ + S +K P ALVLVPTREL +QV+ +
Sbjct: 92 ILARARTGSGKTLAYGLPLLQKVLDAKSAVAKSDPNRQLTRALVLVPTRELAEQVFRHLS 151
Query: 121 ALIELCKGQVQLKVVQLTSSMPASD--LRAALAGPPDIVIATPGCMPKCLSTGVLQSKSF 178
+IE + V+L V + ASD R L+ PD+VIATP L L K+
Sbjct: 152 VIIEHVRDDVRLVNV----AREASDKVQRLLLSEKPDVVIATPSKALAYLQNASLDLKTG 207
Query: 179 SDSLKILVLDEADLLLSYGYEDDLKAL--SAVIPRGCQCLLMSATSSSDVDKLKKLILHN 236
+SL I DEADL+LSYG++ D+K+L + +P Q LMSAT +SDV KLK L+L N
Sbjct: 208 MESLAI---DEADLILSYGHDADVKSLLGANFLPAHFQTFLMSATMTSDVSKLKGLLLRN 264
Query: 237 PYILTLPEVGDVKDEVIP-KNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDM 295
P IL L + +DE N+ QF+ +E DK L + +LKL+L++ KA++F N ++
Sbjct: 265 PVILKL----NHEDESASGSNLVQFYTKTTEEDKFLLVYVILKLKLIRGKAILFVNELER 320
Query: 296 AFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD------------- 342
+RLKLFLEKFG+++ +LNAELP NSR I+EEFN G FDY++ATD+
Sbjct: 321 GYRLKLFLEKFGLRACVLNAELPINSRYSIVEEFNKGKFDYIVATDEPTGASGAVGDDEE 380
Query: 343 -------TQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQ 395
+ + + + + K+ K K+ +E+GV RG+DF NV VINF++P
Sbjct: 381 EEGEEEAEDGEGESKKRKSSKDKAVKTSKRAKST-SAEYGVSRGVDFVNVSCVINFDLPS 439
Query: 396 NAAGYVHRIGRTGRAYNTGASVSLVSPDE---MKIFEEIKSFVGDDE------NEDSNII 446
+ Y+HR+GRT R ++G S+S + P + S GD+ S+ +
Sbjct: 440 SVDAYIHRVGRTARGGSSGTSLSFIVPSAEVGRSKYLYCASTHGDETLFKQLARPSSHAL 499
Query: 447 APFPLLAQN----AVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNP 502
L N +V RYR D KS+T+ +RE+R ++L++EIL+S KL++HFE +P
Sbjct: 500 LGGALQEWNYDAASVAGFRYRVTDTLKSITRATIREARIKELKHEILSSAKLQSHFEDHP 559
Query: 503 KDLDLLKHDKD-LSKKPPASHLRDVPDYLL 531
DL L+HDK L + +HL+ VP YL+
Sbjct: 560 DDLAYLQHDKALLGSRAQQAHLKHVPQYLV 589
>gi|158287479|ref|XP_564375.2| AGAP011147-PA [Anopheles gambiae str. PEST]
gi|157019670|gb|EAL41595.2| AGAP011147-PA [Anopheles gambiae str. PEST]
Length = 551
Score = 353 bits (907), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 196/512 (38%), Positives = 304/512 (59%), Gaps = 22/512 (4%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
+F E LD RL+ + + G PTL+Q+ +IP +LEGKDV+ RA+TGSGKT A+ +P++
Sbjct: 12 NFHEFELDDRLLRDIARLGWISPTLVQEKAIPFLLEGKDVLIRARTGSGKTAAFAIPIIQ 71
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
+ + + + LV+ P+++LC Q+ ++V A + G + ++V L+S +
Sbjct: 72 NVLRYKTETAVRETSVLVMAPSQDLCHQI-AKVFASLTYSCGPL-IRVADLSSKEEKATH 129
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
R LA PDIV++TPG + L+ G L + +SL+ + +DEADL+ ++G+E DLK +
Sbjct: 130 RHLLAERPDIVVSTPGRLRTVLADGTLNVR---ESLRCVTIDEADLMFTFGFEKDLKEVL 186
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
P Q +L SAT DV ++KK++L NP IL L E + + + I E
Sbjct: 187 KHFPPVHQSVLCSATLEEDVTQMKKMVLRNPVILKLEE----PQLAVGTQLTHYQIEAEE 242
Query: 267 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
DK + T+LKL+L+Q K +IF ++D +RLKLFLE+FGI+S ILN+ELP R H +
Sbjct: 243 VDKAAILYTVLKLKLIQGKCIIFVKSVDRCYRLKLFLEQFGIRSCILNSELPIKIRCHTV 302
Query: 327 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAK-----LDSEFGVVRGID 381
+FN G +D +IA+D+ E + +KS K P K ++E V RGID
Sbjct: 303 HQFNQGSYDIIIASDELMA-------ENPALVKKKSDKKPSTKQLLQQTETESSVSRGID 355
Query: 382 FKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENE 441
F+ V V+NF+ P + Y+HR GRT R N G+ +S V +E+++ ++ F+ N+
Sbjct: 356 FQCVSCVVNFDFPSDLNSYIHRAGRTARGQNNGSVLSFVGIEELELKRNVEEFLQTLSND 415
Query: 442 DSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVN 501
+ F + VE+ RYRA+D +++TKI++RE+R ++L+ EI NSEKLK+ FE N
Sbjct: 416 AEFSMKDFN-FNFDEVEAFRYRAKDAWRAITKISIREARIKELKMEIFNSEKLKSFFEEN 474
Query: 502 PKDLDLLKHDKDLSKKPPASHLRDVPDYLLDA 533
P+DL L+HD+ L HL DVP+YL+ A
Sbjct: 475 PRDLQTLRHDRPLHTVHVQEHLGDVPEYLVPA 506
>gi|50557380|ref|XP_506098.1| YALI0F31493p [Yarrowia lipolytica]
gi|74689228|sp|Q6BZR4.1|DBP9_YARLI RecName: Full=ATP-dependent RNA helicase DBP9
gi|49651968|emb|CAG78911.1| YALI0F31493p [Yarrowia lipolytica CLIB122]
Length = 544
Score = 353 bits (906), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 205/527 (38%), Positives = 309/527 (58%), Gaps = 43/527 (8%)
Query: 24 EEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILE-GKDVVARAKTGSGKTFAYLL 82
E+KSF+ GLD RL+ L +++PTLIQ +IPL L+ G D+ A+A TGSGKT AYLL
Sbjct: 7 EDKSFDSFGLDDRLLSGLAACDMKQPTLIQNTTIPLALDKGVDITAKAVTGSGKTVAYLL 66
Query: 83 PLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMP 142
P+ + K + AL++VPTRELC+QV + L + C LK + +T +
Sbjct: 67 PIFELMLRAEKEKRDIQ-TALIVVPTRELCEQVSKVITKLTQFCP---HLKSLNVTQQLG 122
Query: 143 ASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKI--LVLDEADLLLSYGYED 200
+ + L P I++ TP + +L+ D K+ LV+DEADLLLSYGY++
Sbjct: 123 DDVISSLLEEKPSIIVGTP--------SRLLKYAKEMDCSKVGYLVIDEADLLLSYGYKE 174
Query: 201 DLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF 260
DL LS ++P+ +MSAT + + D +K+ + T+ V E + + Q+
Sbjct: 175 DLIELSEMLPKTKHTFIMSATLNKESDLMKQQFCRS----TVASVAVTAAEE-ERKLLQY 229
Query: 261 WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 320
++ CSERDK L + KL+LV+ K ++F N ID +RL+LFLE+FGIK+ +LN+ELP
Sbjct: 230 YVKCSERDKFLLAYVMFKLQLVKGKTIVFVNEIDRCYRLRLFLEQFGIKACVLNSELPIA 289
Query: 321 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 380
SRLHI+E+FN G+F+ LI TD E ++ E S+++K+ +A E+ RG+
Sbjct: 290 SRLHIVEQFNKGVFNLLICTD-----EANKLAEASKSASKQTKEVSRA---HEYSSTRGL 341
Query: 381 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSP------------DEMKIF 428
DF NV V+NF++P ++ YVHR+GRT RA G ++S V P D K
Sbjct: 342 DFMNVAFVLNFDLPLSSRAYVHRVGRTARANKAGTALSFVVPADQWGKDKVAKLDTAKRD 401
Query: 429 EEI-KSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNE 487
E++ K + + E+++ I P+ VE RYR +D ++VT + VRE+R ++++ E
Sbjct: 402 EKVLKKIIKNQESQNME-IKPYS-FDMKQVEGFRYRMDDAFRAVTTVGVREARVKEIKTE 459
Query: 488 ILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAK 534
+LNSE+L HF+ NP DL L+HDK+L +H++ VPDYLL K
Sbjct: 460 LLNSERLARHFDENPDDLKALRHDKELHTSKVQAHMKRVPDYLLGRK 506
>gi|260944756|ref|XP_002616676.1| hypothetical protein CLUG_03917 [Clavispora lusitaniae ATCC 42720]
gi|238850325|gb|EEQ39789.1| hypothetical protein CLUG_03917 [Clavispora lusitaniae ATCC 42720]
Length = 598
Score = 353 bits (906), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 209/561 (37%), Positives = 320/561 (57%), Gaps = 57/561 (10%)
Query: 20 AEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGK-DVVARAKTGSGKTF 78
A ++ +E LD RL+ A++ G + PTLIQ ++IPL LE K D++A++ TGSGKT
Sbjct: 8 AYLDDTSKWESFNLDPRLLQAIDHLGFKYPTLIQSSAIPLALEEKRDIIAKSSTGSGKTA 67
Query: 79 AYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLT 138
AY +P+L + + + K + +++LVPTREL QV + +L+ C + V L+
Sbjct: 68 AYCIPILQNIISTENSNEK-SVKSIILVPTRELSSQVCQFLESLLVYCNHK--FSAVNLS 124
Query: 139 SSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGY 198
S++ L++ L PDI+++TP + + L V + ++ LV+DE DL+LSYGY
Sbjct: 125 SNVSEQVLKSLLVNKPDIIVSTPAKLIEVLEQNVNTNMIDLSKVRSLVIDEVDLVLSYGY 184
Query: 199 EDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN 256
+DL+ L + +P Q LMSAT + D+++LK P +L L E K N
Sbjct: 185 MEDLQQLESYLPVKTNLQTFLMSATINDDLEELKTRFCSRPAVLRLNEQNLTK-----AN 239
Query: 257 VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAE 316
+ Q++ +E DK L + KL L++ K LIF NTID +RLKLFLE+FGI+ ILN+E
Sbjct: 240 LVQYYARTTEFDKFLLSYVIFKLNLIKGKTLIFVNTIDRGYRLKLFLEQFGIRCCILNSE 299
Query: 317 LPQNSRLHILEEFNAGLFDYLIATDDTQ--------------TKEKDQSDEGGHVDSRKS 362
LP NSRLHI++EFN G+++ LIATD+T TK+ ++++ G+ D K+
Sbjct: 300 LPVNSRLHIVDEFNKGVYNLLIATDETNDFTKEEDEDEEEGTTKKVAENEQQGNSD-EKT 358
Query: 363 KKHPKAKLDS------------------EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRI 404
+ + +S E+GV RG+DF+NV V+NF++P + Y+HR+
Sbjct: 359 ENNENVTEESEASHKKSKKNKNKAKKDKEYGVSRGVDFRNVACVLNFDLPTTSRAYIHRV 418
Query: 405 GRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG---DD---------ENEDSNIIAPFPLL 452
GRT RA G ++S V P + + G DD ++++ + P+
Sbjct: 419 GRTARAGKAGMALSFVIPKKEVGRHRVAGLGGPQKDDKILKRIEKQQSKNGFELKPYQ-F 477
Query: 453 AQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDK 512
VE RYRAED +++T +A+RE+R +L+NE+LNS+KLK FE NP+DL L+HDK
Sbjct: 478 DMKQVEGFRYRAEDAFRAITLVAIREARVMELKNELLNSDKLKRFFEENPQDLASLRHDK 537
Query: 513 DLSKKPPASHLRDVPDYLLDA 533
+L S L+ VP+YLL A
Sbjct: 538 ELHPSRVQSQLKRVPEYLLPA 558
>gi|223590194|sp|A5DC85.2|DBP9_PICGU RecName: Full=ATP-dependent RNA helicase DBP9
gi|190344991|gb|EDK36792.2| hypothetical protein PGUG_00890 [Meyerozyma guilliermondii ATCC
6260]
Length = 586
Score = 353 bits (906), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 209/527 (39%), Positives = 315/527 (59%), Gaps = 33/527 (6%)
Query: 23 EEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGK-DVVARAKTGSGKTFAYL 81
+E +E LD RL+ A+ + G +KPTLIQ +IPL LE K D++A+A TGSGKT AY
Sbjct: 32 DESAKWENFKLDPRLLQAVYQLGFEKPTLIQSNAIPLSLEDKRDIIAKASTGSGKTGAYS 91
Query: 82 LPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSM 141
+P++ + +E + + +++LVPT+EL QV + L+ C Q + L +++
Sbjct: 92 IPIIQNILSEGLSEHNIK--SVILVPTKELANQVTKFIEKLLVYCNSITQ---INLATNV 146
Query: 142 PASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD--SLKILVLDEADLLLSYGYE 199
+ + L+ P+I+I+TP L+T + + S D ++ L +DE DL+LSYGY
Sbjct: 147 SDQVVVSLLSAKPEIIISTPSR----LTTVLEKHASIVDLTTVTSLAIDEVDLMLSYGYM 202
Query: 200 DDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNV 257
+DL+ L +P R Q LMSAT + DV+ LK P I+ L + + ++ ++
Sbjct: 203 EDLQKLDDFLPIKRNLQTYLMSATVNDDVNDLKARFCTKPAIIKLNDNEENQNRLV---- 258
Query: 258 QQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAEL 317
QF+ SE DK L+ + KL L++ K L F N ID +RLKLFLE+FG++ ILN+EL
Sbjct: 259 -QFYARTSEFDKFLFAYVIFKLHLIKGKTLAFVNNIDRGYRLKLFLEQFGVRCCILNSEL 317
Query: 318 PQNSRLHILEEFNAGLFDYLIATDD-TQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGV 376
P NSRLHI++EFN +++ LIA+D+ T+ E++ D+ KSKK K+D E+GV
Sbjct: 318 PVNSRLHIVDEFNKNVYNLLIASDESTEVTEQEGEDDQEDSKPEKSKKKKGKKVDGEYGV 377
Query: 377 VRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE------------ 424
RG+DF+NV V+NF++P + YVHR+GRT RA G ++S V P +
Sbjct: 378 SRGVDFRNVACVLNFDLPTTSRSYVHRVGRTARAGKAGMALSFVVPVKEVGKHKTATNPG 437
Query: 425 MKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDL 484
K E++ + + ++++ I P+ VE RYRAED ++VT A+RE+R ++L
Sbjct: 438 AKRDEKVLARIVKSQSKNGFEIKPYQ-FDMTQVEGFRYRAEDAFRAVTSAAIREARIREL 496
Query: 485 RNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 531
+NEI+NSEKLK FE NP+DL L+HDK+L S L+ VPDYLL
Sbjct: 497 KNEIMNSEKLKRFFEENPQDLASLRHDKELHPAKVQSQLKRVPDYLL 543
>gi|158287483|ref|XP_309500.4| AGAP011145-PA [Anopheles gambiae str. PEST]
gi|157019672|gb|EAA05151.5| AGAP011145-PA [Anopheles gambiae str. PEST]
Length = 548
Score = 352 bits (904), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 196/512 (38%), Positives = 303/512 (59%), Gaps = 22/512 (4%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
+F E LD RL+ + + G PTL+Q+ +IP +LEGKDV+ RA+TGSGKT A+ +P++
Sbjct: 9 NFHEFELDDRLLRDIARLGWISPTLVQEKAIPFLLEGKDVLIRARTGSGKTAAFAIPIIQ 68
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
+ + + + LV+ P+++LC Q+ ++V A + G + ++V L+S +
Sbjct: 69 NVLRYKTETAVRETSVLVMAPSQDLCHQI-AKVFASLTYSCGPL-IRVADLSSKEEKATH 126
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
R LA PDIV++TPG + L+ G L + +SL+ + +DEADL+ ++G+E DLK +
Sbjct: 127 RHLLAERPDIVVSTPGRLRTVLADGTLNVR---ESLRCVTIDEADLMFTFGFEKDLKEVL 183
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
P Q +L SAT DV ++KK++L NP IL L E + + + I E
Sbjct: 184 KHFPPVHQSVLCSATLEEDVTQMKKMVLRNPVILKLEE----PQLAVGTQLTHYQIEAEE 239
Query: 267 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
DK + T+LKL+L+Q K +IF ++D +RLKLFLE+FGI+S ILN+ELP R H +
Sbjct: 240 VDKAAILYTVLKLKLIQGKCIIFVKSVDRCYRLKLFLEQFGIRSCILNSELPIKIRCHTV 299
Query: 327 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAK-----LDSEFGVVRGID 381
+FN G +D +IA+D+ E + +KS K P K ++E V RGID
Sbjct: 300 HQFNQGSYDIIIASDELMA-------ENPALVKKKSDKKPSTKQLLQQTEAESSVSRGID 352
Query: 382 FKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENE 441
F+ V V+NF+ P + Y+HR GRT R N G+ +S V E+++ ++ F+ N+
Sbjct: 353 FQCVSCVVNFDFPSDLNSYIHRAGRTARGQNNGSVLSFVGIQELELKRNVEEFLQTLSND 412
Query: 442 DSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVN 501
+ F + VE+ RYRA+D +++TKI++RE+R ++L+ EI NSEKLK+ FE N
Sbjct: 413 AEFSMKDFN-FNFDEVEAFRYRAKDAWRAITKISIREARIKELKMEIFNSEKLKSFFEEN 471
Query: 502 PKDLDLLKHDKDLSKKPPASHLRDVPDYLLDA 533
P+DL L+HD+ L HL DVP+YL+ A
Sbjct: 472 PRDLQTLRHDRPLHTVHVQEHLGDVPEYLVPA 503
>gi|344230357|gb|EGV62242.1| ATP-dependent RNA helicase DBP9 [Candida tenuis ATCC 10573]
Length = 560
Score = 352 bits (902), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 210/530 (39%), Positives = 315/530 (59%), Gaps = 40/530 (7%)
Query: 20 AEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLIL-EGKDVVARAKTGSGKTF 78
A ++ S++ LD RL A+ G + PTL+Q +IPL L E +D++A+A TGSGKT
Sbjct: 13 AYLDDSVSWKAFKLDSRLNQAIEHLGFRTPTLVQSNAIPLALDEKRDIIAKASTGSGKTA 72
Query: 79 AYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLT 138
AY +P++ + K +++LVPTREL QV+ ++ L+ C ++ V+ L+
Sbjct: 73 AYCIPIIQNILTGKDIKE---IQSVILVPTRELANQVHQFIIKLLVYCANKIN--VINLS 127
Query: 139 SSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYG 197
S++ + + L P+I+I+TP + + L S S S S+K L +DE DL+LSYG
Sbjct: 128 SNLSDQVINSMLVNKPEIIISTPSKLIQVLDKA---SPSISLASVKNLTIDEVDLILSYG 184
Query: 198 YEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK 255
Y+DD+ L +P + Q LMSAT + D+++LK P IL L DE I
Sbjct: 185 YKDDVIKLEEYLPIKKNLQVFLMSATVNDDLNELKAKFCSKPAILKL------NDENISS 238
Query: 256 N-VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILN 314
N + Q++ +E DK L + KL L++ K L+F N+ID +RLKLFLE+FGI+ ILN
Sbjct: 239 NKLVQYYCRTTEFDKFLLSYVIFKLNLIKGKTLVFVNSIDRGYRLKLFLEQFGIRCCILN 298
Query: 315 AELPQNSRLHILEEFNAGLFDYLIATDDTQ-TKEKDQSDEGGHVDSRKSKKHPKAKLDSE 373
+ELP NSRLHI++EFN +++ LIATDDT T EK+ V+ S K K K D E
Sbjct: 299 SELPVNSRLHIVDEFNKNIYNLLIATDDTNDTNEKE-------VEDSTSNKKDKVKKDKE 351
Query: 374 FGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE--------- 424
+GV RG+DF+NV V+NF++P + YVHR+GRT RA +G ++S V PD+
Sbjct: 352 YGVSRGVDFRNVACVLNFDLPTTSRAYVHRVGRTARAGKSGMALSFVIPDKEFGKHKVAS 411
Query: 425 ---MKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRA 481
K E+I + + + + + P+ + VE RYR+ED ++VT+ A+RE+R
Sbjct: 412 LKTAKRDEKILARIVKQQTKSGFELKPYQFDIKQ-VEGFRYRSEDAFRAVTQTAIREARV 470
Query: 482 QDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 531
++L+ E++NS+KLK FE NP+DL L+HDK+L + L+ VP+YLL
Sbjct: 471 KELKQELINSDKLKRFFEENPQDLVSLRHDKELHPSRVQTQLKRVPEYLL 520
>gi|403414059|emb|CCM00759.1| predicted protein [Fibroporia radiculosa]
Length = 660
Score = 350 bits (897), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 217/597 (36%), Positives = 322/597 (53%), Gaps = 106/597 (17%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF + LD RL+ AL G +PTL+Q +IPL LE +D++ARA+TGSGKT AY +PL+
Sbjct: 15 SFSHI-LDARLLRALADMGFARPTLVQTKAIPLALENRDILARARTGSGKTAAYCIPLVQ 73
Query: 87 RLFNESSPK--SKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
++ N + + S+ AL+LVPTREL +QV + + +LI C +V + + S+
Sbjct: 74 KVLNAKAVEDPSRQITRALILVPTRELSEQVSAHLNSLIAYCDKEVTIANICTGSTTQLQ 133
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKIL-VLDEADLLLSYGYEDDLK 203
+ L+ PDIVIATP + L+ +LQSK+ V+DEADL+LSYG+++ ++
Sbjct: 134 --KTLLSDHPDIVIATPA---RALT--LLQSKALLLDALDTLVIDEADLILSYGHDESVR 186
Query: 204 AL--SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW 261
+ +P+ Q LMSAT + DV+ LK L+L +P IL L E DE N+ Q++
Sbjct: 187 QVFQGGFLPKVFQSFLMSATMTEDVEALKGLVLRSPVILKLEE-----DEDEAANLSQYY 241
Query: 262 ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 321
+ CSE DK L + +LKL L++ K ++F N +D +RLKLFLE+F IKS +LN+ELP NS
Sbjct: 242 VRCSEVDKFLLVYVILKLRLIKGKCILFVNDVDRCYRLKLFLEQFSIKSCVLNSELPLNS 301
Query: 322 RLHILEEFNAGLFDYLIATDDTQTKEKDQSDE--------------------GGHVDSRK 361
R H ++EFN G++DY+IA+D++ + + SDE G S +
Sbjct: 302 RYHTVQEFNKGVYDYIIASDESAGRTEHDSDEEEPHAESDDDEYTTTQRETLSGQPASDE 361
Query: 362 SKKHPKA-----------------------------------KLDSEFGVVRGIDFKNVH 386
K+ P + D+E+GV RG+DF +V
Sbjct: 362 EKEQPSSSGSSLKRKRRSDTLATEGTAAKSSSKSSKRKQRRRNNDAEYGVSRGVDFVDVS 421
Query: 387 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNII 446
VINF++P +A Y HR+GRT RA TG ++S V P + ++ V + ED +
Sbjct: 422 CVINFDLPTSARSYTHRVGRTARAGRTGMALSFVIPRDQWGRNKVVGSV-ESSKEDEKVF 480
Query: 447 APFPL-------------LAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEK 493
A VE+ RYR ED +SVT+ A++E+R ++L++EILNS+K
Sbjct: 481 ARVEREQAARGSQVKEYSFDMKQVEAFRYRMEDALRSVTRSAIKEARIKELKSEILNSDK 540
Query: 494 -------------------LKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 531
++AHFE NP DL+ L+HDK L H++ VP YLL
Sbjct: 541 LKVTTLLLLFSKAMLIAYGIQAHFEDNPNDLEYLRHDKPLHPTRVQPHMKHVPKYLL 597
>gi|406602502|emb|CCH45896.1| hypothetical protein BN7_5483 [Wickerhamomyces ciferrii]
Length = 579
Score = 350 bits (897), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 225/582 (38%), Positives = 343/582 (58%), Gaps = 51/582 (8%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLIL-EGKDVVARAKTGSGKTFAYLLPLL 85
SFE LD RL+ A+ + G + PTL+Q +IPL L E +D++A+A TGSGKT AY +P++
Sbjct: 16 SFESFKLDPRLIQAIKQLGFKNPTLVQSKAIPLALQEKRDIIAKASTGSGKTVAYSVPVV 75
Query: 86 HRLFNE--SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPA 143
+ N ++ S ++++LVPT+EL QV S + LI C + K++ L++ +
Sbjct: 76 QSILNAKANNNSSDHEISSIILVPTKELATQVTSFLEKLILYCGKSI--KILNLSNQINE 133
Query: 144 SDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS-----LKILVLDEADLLLSYGY 198
+ L P+I+++TP + L +DS L LV+DE DL+LSYGY
Sbjct: 134 QVQHSLLLENPEILVSTPSRLINSLQKN-------NDSIDLSKLTYLVIDEVDLILSYGY 186
Query: 199 EDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN 256
++DL L++ +P + Q LMSAT S D+ LK +P IL L + DE+ K+
Sbjct: 187 QEDLDKLASYLPLKKTLQTFLMSATLSEDIQDLKTKFCRSPAILKLND-----DELNNKS 241
Query: 257 -VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNA 315
+ Q++ +E DK L + KL L++ K LIF N ID +RLKLFLE+FGIKS ILN+
Sbjct: 242 KLVQYYAKTTEFDKFLLSYVIFKLNLIKGKTLIFVNNIDRGYRLKLFLEQFGIKSCILNS 301
Query: 316 ELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHV-------DSRKSKKHPKA 368
ELP NSRLHI++E+N +++ LIATDD+ +++ ++ + + +KK K
Sbjct: 302 ELPINSRLHIVDEYNKNVYNLLIATDDSDNIQENDEEDEDQEGEGEVENNDKSNKKDSKL 361
Query: 369 KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE---- 424
K D E+GV RG+DFKNV V+NF++P +A YVHR+GRT RA G S+S V P++
Sbjct: 362 KKDKEYGVSRGVDFKNVACVLNFDLPLSAKSYVHRVGRTARAGKAGISLSFVIPEKEVGK 421
Query: 425 --------MKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAV 476
K E+I + +N+ I P+ VE RYR+ED +SVT++++
Sbjct: 422 HKASFLKSTKRDEKILRRIIKQQNKLGFEIKPYQ-FDMKQVEGFRYRSEDAFRSVTQVSI 480
Query: 477 RESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL--DAK 534
RE+R ++L+NE+L +EKLK HFE NP+DL L+HDK+L +HL+ +P+YLL A+
Sbjct: 481 REARVKELKNELLTNEKLKRHFEENPQDLASLRHDKELHPARVQTHLKRIPNYLLPEGAR 540
Query: 535 TQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSFSAE 576
T E K++ ++++ ++K K DPLKSF ++
Sbjct: 541 TDEK----KISFVPFHKNKINKKKMGKKKGGKIDPLKSFKSK 578
>gi|195132612|ref|XP_002010737.1| GI21708 [Drosophila mojavensis]
gi|193907525|gb|EDW06392.1| GI21708 [Drosophila mojavensis]
Length = 566
Score = 349 bits (895), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 221/588 (37%), Positives = 326/588 (55%), Gaps = 60/588 (10%)
Query: 20 AEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFA 79
++A+E F EL LD R++ A+ + G +PTLIQ +IPL+LEGKDVV RA+TGSGKT
Sbjct: 2 SQAKELLQFHELELDQRILKAIAQLGWVQPTLIQSTAIPLLLEGKDVVVRARTGSGKTAT 61
Query: 80 YLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLT- 138
Y LPL+ ++ N S+ +ALVL PT+ELC+Q + L + C KVV++T
Sbjct: 62 YALPLIQKILNSKLNSSEQCVSALVLCPTKELCRQSRQVIEQLSDSCG-----KVVRVTD 116
Query: 139 ---SSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD--SLKILVLDEADLL 193
SS A+ R ALA PDIV++TP +L D ++ LV+DEADL+
Sbjct: 117 IAGSSNDAATQRHALAERPDIVVSTPA--------KILAHADIVDLKHIETLVVDEADLI 168
Query: 194 LSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVI 253
++GYE D K L ++P Q +L+SAT S DV ++K L LHN L L E D V
Sbjct: 169 FAFGYEKDFKKLIKLLPPIYQAVLVSATISDDVARMKGLCLHNAVTLKLEE----PDLVS 224
Query: 254 PKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAIL 313
+ I E +K + LLKL L+Q K++IF N +D ++++LFLE+FGI+S +L
Sbjct: 225 LDQLSHHRILAEENEKPAILYALLKLMLIQGKSIIFVNNVDRCYKVRLFLEQFGIRSCVL 284
Query: 314 NAELPQNSRLHILEEFNAGLFDYLIATDD--TQTKEKDQSDEGGHVDSRKSKKHPKAKLD 371
N+ELP N R+H + +FN G++D +IA+D+ + ++GG + K D
Sbjct: 285 NSELPANIRIHTINQFNRGVYDIIIASDEHLLEKPAGKTKNKGG-----------QQKND 333
Query: 372 SEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS----PDEMKI 427
E RGIDF+ V+ VINF+ P++ Y+HR GRT R N G+ +S VS P +
Sbjct: 334 HESSASRGIDFQGVNNVINFDFPRDVTSYIHRAGRTARGNNKGSVLSFVSIKEAPINQAV 393
Query: 428 FEEIKSFVGDD------------ENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIA 475
E+++ +G + NII P+ + VE+ RYRA D ++ T++A
Sbjct: 394 EEKLRISLGKQPHLTVDALSDQPQKPTENIIKPYQFKLEE-VEAFRYRANDCWRAATRVA 452
Query: 476 VRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKT 535
V ++R ++++ EILN EKLK FE N +DL L+HDK SHL VP+Y+L +
Sbjct: 453 VHDTRIKEIKTEILNCEKLKGFFEENKRDLMALRHDKPSRTLKVQSHLAHVPEYILPS-- 510
Query: 536 QEACKMVKLARA-AMGNKNSSRRQGPRRKFRK--SDPLKSFSAEPTKR 580
A K V L + A +R G + +++ +DPL + KR
Sbjct: 511 --ALKRVALNHSTAQSAPKQARITGAKAAYQRQSNDPLMVSEVDYGKR 556
>gi|358057669|dbj|GAA96434.1| hypothetical protein E5Q_03101 [Mixia osmundae IAM 14324]
Length = 642
Score = 349 bits (895), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 220/574 (38%), Positives = 321/574 (55%), Gaps = 86/574 (14%)
Query: 33 LDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNES 92
LD RL+ AL++ G PTL+Q IPL L G DV+ARA+TGSGKT AY +P++ +
Sbjct: 14 LDARLLRALSELGFTHPTLVQHKVIPLALAGNDVLARARTGSGKTLAYGIPVVQSILRTK 73
Query: 93 SPKSKLAP-----AALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMP----- 142
+ S +P AL+LVPT+EL +QV + +L +K++ + SS
Sbjct: 74 AALSAASPDRAATRALILVPTKELSEQVTQHLRSLCSFLGETDAVKILNIASSSGSRSKK 133
Query: 143 --ASDL------RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLL 193
A+D + LA PDIV+ATP + L L+S++ + +L+ LV+DEADL+
Sbjct: 134 GKATDRTNDKAHKLGLAEKPDIVVATPS---RALDH--LRSETLALTALESLVIDEADLI 188
Query: 194 LSYGYE-DDLKAL---SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVK 249
LSYG+ DD+KAL S +P Q LMSAT + +VD+LK ++L P +L L E D
Sbjct: 189 LSYGHSSDDIKALLSGSWNLPAVYQSYLMSATLNDEVDELKGIVLRRPVVLKLDEQEDGL 248
Query: 250 DEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIK 309
N+ Q + CSE DK L+I +LKL+LV+ KALIF N +D +R+KLFLEKFG++
Sbjct: 249 -----ANLTQHCVRCSEEDKFLFIYVILKLKLVKGKALIFVNDVDRGYRVKLFLEKFGLR 303
Query: 310 SAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQS------------------ 351
S +LNAELP NSR H ++EFN G+FDYLIATD++ E +
Sbjct: 304 SGVLNAELPFNSRYHAVQEFNRGVFDYLIATDESGLSEAPSTAASMPQVEDLIPAQAGEA 363
Query: 352 --------DEGGHVDSRKSKKHPKAKLDS-----------EFGVVRGIDFKNVHTVINFE 392
+E ++++ K K+ K + S ++GV RG+DF +V VINF+
Sbjct: 364 VDPAQEPIEELDNIETGKRKREDKPETASKKRKASKNSQIDYGVSRGVDFVDVACVINFD 423
Query: 393 MPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM---KIFEEI------------KSFVGD 437
+P N Y HR+GRT RA TG ++S V P + + F ++ + D
Sbjct: 424 LPANVESYTHRVGRTARAGRTGMALSFVVPKALWGKQTFGDLSLPNARRDEAHWRKIEKD 483
Query: 438 DENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAH 497
+ + + + VE RYR ED +SVT+ ++RE+R ++++ E++NS+KLKAH
Sbjct: 484 QKARGVTDLKEYKFDMKQ-VEGFRYRMEDGLRSVTRASIREARVREIKQEVINSDKLKAH 542
Query: 498 FEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 531
FE NP DLD L+HDK L H++ VP YL+
Sbjct: 543 FEDNPADLDFLRHDKPLHPARVQPHMKHVPSYLM 576
>gi|146423163|ref|XP_001487513.1| hypothetical protein PGUG_00890 [Meyerozyma guilliermondii ATCC
6260]
Length = 586
Score = 348 bits (894), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 211/528 (39%), Positives = 313/528 (59%), Gaps = 35/528 (6%)
Query: 23 EEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGK-DVVARAKTGSGKTFAYL 81
+E +E LD RL+ A+ + G +KPTLIQ +IPL LE K D++A+A TGSGKT AY
Sbjct: 32 DESAKWENFKLDPRLLQAVYQLGFEKPTLIQSNAIPLSLEDKRDIIAKASTGSGKTGAYS 91
Query: 82 LPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSM 141
+P++ + +E + + +++LVPT+EL QV + L+ C Q + L +++
Sbjct: 92 IPIIQNILSEGLSEHNIK--SVILVPTKELANQVTKFIEKLLVYCNSITQ---INLATNV 146
Query: 142 PASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD--SLKILVLDEADLLLSYGYE 199
+ + L P+I+I+TP L+T + + S D ++ L +DE DL+LSYGY
Sbjct: 147 SDQVVVSLLLAKPEIIISTP----LRLTTVLEKHASIVDLTTVTSLAIDEVDLMLSYGYM 202
Query: 200 DDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNV 257
+DL+ L +P R Q LMSAT + DV+ LK P I+ L + + ++ ++
Sbjct: 203 EDLQKLDDFLPIKRNLQTYLMSATVNDDVNDLKARFCTKPAIIKLNDNEENQNRLV---- 258
Query: 258 QQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAEL 317
QF+ SE DK L+ + KL L++ K L F N ID +RLKLFLE+FG++ ILN+EL
Sbjct: 259 -QFYARTSEFDKFLFAYVIFKLHLIKGKTLAFVNNIDRGYRLKLFLEQFGVRCCILNSEL 317
Query: 318 PQNSRLHILEEFNAGLFDYLIATDD-TQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGV 376
P NSRLHI++EFN +++ LIA+D+ T+ E++ D+ KSKK K+D E+GV
Sbjct: 318 PVNSRLHIVDEFNKNVYNLLIASDESTEVTEQEGEDDQEDSKPEKSKKKKGKKVDGEYGV 377
Query: 377 VRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
RG+DF+NV V+NF++P + YVHR+GRT RA G ++S V P +K + K+
Sbjct: 378 SRGVDFRNVACVLNFDLPTTSRSYVHRVGRTARAGKAGMALSFVVP--VKEVGKHKTATN 435
Query: 437 DDENEDSNIIAPF-PLLAQNA------------VESLRYRAEDVAKSVTKIAVRESRAQD 483
D ++A L ++N VE RYRAED ++VT A+RE+R ++
Sbjct: 436 PGAKRDEKVLARIVKLQSKNGFEIKPYQFDMTQVEGFRYRAEDAFRAVTLAAIREARIRE 495
Query: 484 LRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 531
L+NEI+NSEKLK FE NP+DL L+HDK+L S L+ VPDYLL
Sbjct: 496 LKNEIMNSEKLKRFFEENPQDLASLRHDKELHPAKVQSQLKRVPDYLL 543
>gi|289742677|gb|ADD20086.1| RNA helicase [Glossina morsitans morsitans]
Length = 543
Score = 348 bits (894), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 208/531 (39%), Positives = 308/531 (58%), Gaps = 45/531 (8%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F E+ LD R++ A++K G +PTLIQ+A+IPL+LEGKDV+ +A+TGSGKT A+ LPLL +
Sbjct: 10 FHEMELDDRILKAISKLGWTEPTLIQEAAIPLLLEGKDVIVKARTGSGKTAAFALPLLQK 69
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL- 146
+ N ++ +AL+L P++ELCQQ + + E C G+V L+++ L+S +DL
Sbjct: 70 ILNTKMNAAEQCISALILAPSKELCQQTRVAMQQMSEKC-GKV-LRIIDLSS----NDLL 123
Query: 147 --RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
R AL+ PD+V++TP + L L K L+ LV+DEADL S+G+E + K
Sbjct: 124 AQRHALSERPDVVVSTPAKILLHLQASALDLK----CLETLVVDEADLAFSFGFEKEFKK 179
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW--- 261
+P Q +L+SAT + +V +K +IL NP IL L E E++P+ QQ
Sbjct: 180 FVEYLPPIYQAVLVSATITQEVIDIKSIILKNPVILKLEE-----PELVPE--QQLLHQR 232
Query: 262 ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 321
I E DK + LLKL L++ K +IF N++D +++LKLF+E+F IKS +LN+ELP
Sbjct: 233 IIVEEDDKPAILYALLKLRLIRGKNVIFVNSVDRSYKLKLFIEQFSIKSCVLNSELPSTI 292
Query: 322 RLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGID 381
R+H + +FN G +D +IA+D+ + ++ K D E G RGID
Sbjct: 293 RIHTINQFNQGAYDLIIASDEHMLENPGRN-----------------KSDKESGASRGID 335
Query: 382 FKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENE 441
F V VIN + P++A Y+HR GRT R N G +S VS E + E+++ +
Sbjct: 336 FHCVSNVINLDFPKDANSYIHRAGRTARGNNKGTVLSFVSLHEQQTNEKVEERLRSGYKS 395
Query: 442 DSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVN 501
D II + + VE RYRA+D +++T+IAV ESR ++++ EI NSEKLK F N
Sbjct: 396 DEQIIKNYQ-FKLDEVEPFRYRAKDAWRAITRIAVHESRVREIKQEIFNSEKLKGFFNEN 454
Query: 502 PKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNK 552
+DL +L+HDK L HL VPDY++ +A K + L NK
Sbjct: 455 TRDLQVLRHDKPLKTIKIQPHLSQVPDYIVP----KALKRLTLTAKGTANK 501
>gi|169600249|ref|XP_001793547.1| hypothetical protein SNOG_02955 [Phaeosphaeria nodorum SN15]
gi|118578053|sp|Q0UZ59.1|DBP9_PHANO RecName: Full=ATP-dependent RNA helicase DBP9
gi|111068566|gb|EAT89686.1| hypothetical protein SNOG_02955 [Phaeosphaeria nodorum SN15]
Length = 597
Score = 348 bits (893), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 221/580 (38%), Positives = 331/580 (57%), Gaps = 52/580 (8%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF EL L+ RL+ + + PT +Q +IPL L+G+D++AR+ TG+GKT AYLLP+LH
Sbjct: 48 SFAELQLEPRLLRGIRDQKWGSPTAVQSKAIPLALQGRDILARSGTGTGKTGAYLLPILH 107
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
S L+LVPT+EL Q+ AL C V+++ + S +
Sbjct: 108 NTLLRKGKTS------LILVPTKELALQITKVAKALSAHCGQAVRIQNIAGKESEVVT-- 159
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
+A LA PDIVIATP ++TG L + LV+DE DL++ YG+++DL ++
Sbjct: 160 KAKLADNPDIVIATPARASANINTGALAVTELAH----LVVDEGDLVMGYGFKEDLDQIA 215
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
IP+G Q LMSAT +++V+ L L+ ++P +L L ++ KD K V+Q+ I C+E
Sbjct: 216 QNIPKGVQMFLMSATLNTEVESLGSLLCNDPVVLKLDDLD--KDS---KRVKQYVIKCAE 270
Query: 267 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
+K L I + KL L++ K ++F D ++R+KLFLE+FGIKS +LN+ELP SRLHI+
Sbjct: 271 EEKFLLIYAMFKLGLIKGKTIVFVGDTDRSYRVKLFLEQFGIKSCVLNSELPLASRLHIV 330
Query: 327 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPK----AKLDSEFGVVRGIDF 382
EEFN +++ LIA+D+T+ + D + KK PK AK DS GV RGIDF
Sbjct: 331 EEFNKNIYNILIASDETEILGSQKK-----ADESRPKKKPKTDKEAKNDS--GVSRGIDF 383
Query: 383 KNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENE- 441
NV V+NF+ P Y HRIGRT RA +G ++S + P + + +F G + +E
Sbjct: 384 LNVSCVLNFDFPATYKSYFHRIGRTARAGKSGTAISFIIPKDKYRKHKSTTFAGCENDEE 443
Query: 442 -----DSNIIAPFPLLAQN----AVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSE 492
+ + A L N +E RYR D +SVT+IA+RE+R +++R E+ S+
Sbjct: 444 VLKKVEKHQEAGQKLENYNFDMKRLEPFRYRFGDALRSVTRIAIREARIKEIRLELSKSQ 503
Query: 493 KLKAHFEVNPKDLDLLKHDKDLSKKPPAS---HLRDVPDYLLDAKTQEACKM--VKLARA 547
KL +FE NP+ L L+HD+ L+ PA HL+ VPDYLL +++ + V L
Sbjct: 504 KLSRYFEENPEALAHLRHDQTLNH--PARIQPHLKHVPDYLLPGGSRKPADVGFVGLNVP 561
Query: 548 AMGNKNSSRRQGPR--RKFRKSDPLKSFSAEPTKRAGKGR 585
+ + + +G + R+ K DPLK+F+A GKG+
Sbjct: 562 RVNKRQYVKGKGRKVVRRNGKVDPLKTFNAR-----GKGK 596
>gi|241956492|ref|XP_002420966.1| ATP-dependent RNA helicase, putative; ribosome biogenesis protein,
putative [Candida dubliniensis CD36]
gi|223644309|emb|CAX41122.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
Length = 570
Score = 348 bits (892), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 219/572 (38%), Positives = 328/572 (57%), Gaps = 35/572 (6%)
Query: 23 EEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGK-DVVARAKTGSGKTFAYL 81
++E +++ LD RL+ A+++ G PTLIQ ++IPL LE K D++A+A TGSGKT AY
Sbjct: 11 DDETTWDSFNLDPRLLQAIDQLGFSNPTLIQSSAIPLALEEKRDIIAKASTGSGKTAAYC 70
Query: 82 LPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSM 141
+P+++ L S + +++LVPTREL QV+ + L+ ++ ++ L+SS
Sbjct: 71 IPIVNNLLTNDSTQ---GIKSIILVPTRELSNQVFQFIEKLLIFSNNKIN--ILNLSSSY 125
Query: 142 PASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDD 201
L + L P+I+I+TP + + L + ++K L +DE DL+LS+GY DD
Sbjct: 126 SDQVLNSLLVNKPEIIISTPAKLIQILEKN--EKNIDLTTVKNLTIDEVDLVLSFGYLDD 183
Query: 202 LKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
LK L + +P + Q LMSAT + D+D LK+ P IL L E +++++ Q
Sbjct: 184 LKKLESYLPVKKNLQTFLMSATVNDDLDDLKQRYCTKPAILKLNEDAASQNKLV-----Q 238
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
++ +E DK L + KL L++ K + F N ID +RLKLFLE+FGI+ ILN+ELP
Sbjct: 239 YYAKTTEFDKFLLAYVIFKLNLIKGKTIAFVNNIDRGYRLKLFLEQFGIRCCILNSELPI 298
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQ------TKEKDQSDEGGHVDSRKSKKHPKAKLDSE 373
NSRLHI+EEFN ++ LIATD+T ++ D EG K K K K D E
Sbjct: 299 NSRLHIVEEFNKNVYHLLIATDETNELNEEQDEDDDDEGEGEIETKSKKSKKSKFKQDKE 358
Query: 374 FGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSP----------- 422
+GV RG+DF+NV V+NF++P ++ Y+HRIGRT RA G ++S V P
Sbjct: 359 YGVSRGVDFRNVACVLNFDLPTSSKAYIHRIGRTARAGKAGMALSFVLPLSEFGKHKTAS 418
Query: 423 -DEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRA 481
K E++ + ++++ I P+ VE RYRA+D ++VT+ VRE+R
Sbjct: 419 LPSAKKDEKVLRRIVKQQSKNGFEIKPYQ-FDMKQVEGFRYRADDAFRAVTQTVVREARV 477
Query: 482 QDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKM 541
++L+NE++NSEKLK FE NP+DL L+HDK+L S L++VP YLL + K
Sbjct: 478 KELKNELINSEKLKRFFEENPQDLASLRHDKELHPARIQSQLKNVPQYLLPESARSDVKN 537
Query: 542 VKLARAAMGNKNSSRRQGPRRKFRKSDPLKSF 573
+ NK R+G + +K DPLKSF
Sbjct: 538 IGFV-PFHKNKIHKHRKGKGKGRKKVDPLKSF 568
>gi|226286779|gb|EEH42292.1| ATP-dependent RNA helicase DBP9 [Paracoccidioides brasiliensis
Pb18]
Length = 627
Score = 345 bits (885), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 213/571 (37%), Positives = 308/571 (53%), Gaps = 92/571 (16%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SFE L LD RL+ AL + KPTLIQ +IPL L+GKDV+
Sbjct: 25 SFESLNLDPRLLQALTAQKFTKPTLIQAEAIPLALDGKDVLG------------------ 66
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
+ ++ + + A AL+LVPTREL +QV V + + + LT + +
Sbjct: 67 -VLDDPTNR---AVQALILVPTRELAEQVQKVVASFCAFAGKNI--RSANLTQKVSDAVQ 120
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
R+ LA PD+VI+TPG +++ L + L LV+DEADL+LSYGYE D++ L+
Sbjct: 121 RSILADLPDVVISTPGRAVVNINSSALSL----ERLAHLVIDEADLVLSYGYEQDMQNLA 176
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ--QFW--- 261
+PRG Q LMSAT SS+VD LK L NP IL L E D + V+ +W
Sbjct: 177 KAVPRGVQTFLMSATFSSEVDTLKGLFCRNPVILKLEEKDDEGAGISQFVVRYGAYWRGL 236
Query: 262 ----------ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 311
I C+E +K L + KL+LV+ K +IF +D +RLKLFLE+FGI+S
Sbjct: 237 PFQTHFTNRIIRCAEDEKFLLTYVIFKLQLVKGKCIIFVGDVDRCYRLKLFLEQFGIRSC 296
Query: 312 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQT---------KEKDQSDE----GGHVD 358
+LN+ELP NSR+H+++EFN G++D +IA DD + K +SDE G D
Sbjct: 297 VLNSELPVNSRIHVVQEFNKGVYDIIIAADDQEVLGELPKKSKKPNRKSDEAARGAGQED 356
Query: 359 SRK-----------------------SKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQ 395
S + SK++ K+ + ++G+ RGIDF++V V+NF++P
Sbjct: 357 SEENPDTKTSKDGAQDSSDEEVQEHPSKRYKKSVKEKDYGISRGIDFQDVACVLNFDLPT 416
Query: 396 NAAGYVHRIGRTGRAYNTGASVSLVSPDEM------------KIFEEIKSFVGDDENEDS 443
A Y HRIGRTGRA TG ++S V P K E + + + + +
Sbjct: 417 TAKSYTHRIGRTGRAGKTGMALSFVVPSNQFGKHKPTSFPSAKRDEAVLAKITKRQAKAG 476
Query: 444 NIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPK 503
+ P+ + VE+ RYR D ++VT+IAV+E+RA+++R E+L SEKLK HFE NP+
Sbjct: 477 QEVKPYHFEMKQ-VEAFRYRMSDALRAVTRIAVQEARAREIRQELLKSEKLKRHFEENPE 535
Query: 504 DLDLLKHDKDLSKKPPASHLRDVPDYLLDAK 534
+L L+HD +L +HL+ VPDYL+ K
Sbjct: 536 ELRQLRHDGELRAARVQAHLKHVPDYLMPTK 566
>gi|367029669|ref|XP_003664118.1| hypothetical protein MYCTH_2081249 [Myceliophthora thermophila ATCC
42464]
gi|347011388|gb|AEO58873.1| hypothetical protein MYCTH_2081249 [Myceliophthora thermophila ATCC
42464]
Length = 873
Score = 345 bits (885), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 219/614 (35%), Positives = 335/614 (54%), Gaps = 91/614 (14%)
Query: 8 PSKEVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVV 67
P E K ++ E+ AE E SF ELGLD RLV A+ K+ +KPTL+Q+ +IPL L+G+DV+
Sbjct: 296 PKTESKPSQPEKQAAETEPSFAELGLDPRLVQAIAKQNFEKPTLVQRKAIPLALKGQDVL 355
Query: 68 ARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCK 127
+AKTGSGKT AY+LP+L + + AAL+LVPTREL QV+ + C
Sbjct: 356 CKAKTGSGKTAAYVLPVLSTILKRKAVDPTPFTAALILVPTRELADQVFKAIEQFSAFCA 415
Query: 128 GQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVL 187
+ +LT ++ + R+ LA PD+V++TP +S+ S L+ LVL
Sbjct: 416 KDIH--AARLTENVSDAVQRSLLANVPDVVVSTPARAWHSVSS----SALSLAKLQHLVL 469
Query: 188 DEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGD 247
DEADL+LSYGY++D++ +S +P+G Q ++MSAT S+++D LK + NP +L L E
Sbjct: 470 DEADLVLSYGYDEDMENISRSLPKGVQTIMMSATLSAELDALKGIFCRNPTVLDLHEEFG 529
Query: 248 VKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFG 307
+DE + QF++ CSE DK L + KL+L++ LIF ID ++RLKLF E+F
Sbjct: 530 AEDE----KLTQFYVKCSEEDKWLISYLIFKLQLIKGPCLIFVADIDRSYRLKLFFEQFS 585
Query: 308 IKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD------------------------- 342
I+S +LN+ELP N+R+ I+EEFN G++D +IA+D+
Sbjct: 586 IRSCVLNSELPINTRIKIIEEFNRGIYDIIIASDEKSELFGDEAADAEEEKKKKKQKQKS 645
Query: 343 TQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVH 402
E ++ DEG + + KK + K D E+GV R
Sbjct: 646 NSNDEAEKKDEG----AEQPKKKRRYKKDEEYGVSR------------------------ 677
Query: 403 RIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENED------------SNIIAPFP 450
GRT RA G ++S V P E+ + + +++E + + P+
Sbjct: 678 --GRTARAGRAGIALSFVVPKELHGKHKPTTIKSTEKDEKVLAKVMRQQAKLNRKLEPYN 735
Query: 451 LLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKH 510
++ +E+ RYR D ++VTK+A+RE+R ++LR E+L SE LK +FE NP +L L+H
Sbjct: 736 -FNKSQMEAFRYRMNDALRAVTKVAIREARTKELRQELLRSEALKRYFEENPTELAHLRH 794
Query: 511 DKDL---SKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAM----GNKNSSRRQGPR-R 562
D +L +++ P HL+ VPDYLL + ++A ++ + G R+ P+ R
Sbjct: 795 DGELGHATRQQP--HLKHVPDYLLPKEGKKALASEQIGFVPLKKLDGKDRRHRKGKPKGR 852
Query: 563 KFR---KSDPLKSF 573
F+ K DPLK+F
Sbjct: 853 SFKVGGKKDPLKTF 866
>gi|224003339|ref|XP_002291341.1| dead-box RNA helicase [Thalassiosira pseudonana CCMP1335]
gi|220973117|gb|EED91448.1| dead-box RNA helicase, partial [Thalassiosira pseudonana CCMP1335]
Length = 529
Score = 342 bits (878), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 221/552 (40%), Positives = 324/552 (58%), Gaps = 33/552 (5%)
Query: 32 GLDLRLVHALNKKGIQKPTLIQQASIPLIL-EGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
G+D RL+ AL++ PTL+Q SIPL L G+D++ RA+TGSGKT AY +P++ ++
Sbjct: 1 GIDARLLKALSRLNYVHPTLVQSKSIPLALTSGRDLLVRARTGSGKTLAYCIPVIQKILG 60
Query: 91 ESSPKSKLAPA--ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRA 148
+ A ++LVPTRELC QV + L C V++ V+ S+ + A
Sbjct: 61 RKKEEQGEGTAVKGVILVPTRELCTQVAKVIDDLTYYCADHVKVVVLNNNSNNLQQE--A 118
Query: 149 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 208
L PDIV+ATP + + +G L K S++ LV+DEADL+LS+GY +D+ +
Sbjct: 119 LLRDRPDIVVATPAGLVGHVRSGKLNLKR---SVETLVVDEADLILSFGYANDVTEIMKS 175
Query: 209 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK-NVQQFWISCSER 267
+P+ CQ LMSAT S ++ LK ++LH+P +L L E +DE N+ QF++ +
Sbjct: 176 LPKTCQGFLMSATLSPELHNLKHVVLHSPAVLKLEE----EDEDGGNGNLMQFYLDLPGK 231
Query: 268 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 327
DK L + LKL L++ K L F NTID +RLKLFLE+F I+SA+LNAELP SRL+I+E
Sbjct: 232 DKFLVLYVFLKLGLLKGKGLFFVNTIDGGYRLKLFLEQFHIRSAVLNAELPLRSRLNIIE 291
Query: 328 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVD----SRKSKKHPKAKLDSEFGVVRGIDFK 383
FN G FDYLIATD+ +D H D S K K + + + D E+GV RG+DF+
Sbjct: 292 HFNVGNFDYLIATDEA-------TDMRSHHDGKKKSTKGKSNKRRRRDGEYGVSRGLDFR 344
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDS 443
V V+N ++P + Y HRIGRT R G +++LV + EE + EN+ +
Sbjct: 345 GVSFVVNVDLPTSPESYTHRIGRTARGGANGVALTLVDGSKD---EEAEMLFQIQENQPT 401
Query: 444 NIIAPFPL-LAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNP 502
P PL +E RYR ED ++VT++AVRE+RA +++ EILNSE+L++HF+ NP
Sbjct: 402 KSSGPCPLDFDLKEIEGFRYRVEDGTRAVTRVAVRETRAAEVKAEILNSERLQSHFQENP 461
Query: 503 KDLDLLKHDKDLSKKPPAS-HLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPR 561
DL LL+HD+ + HL+ VP YLL ++ ++R K S+R R
Sbjct: 462 ADLQLLQHDRQATHISKVQDHLKHVPKYLL----PRGMEVADVSRKRRKKKTRSQRMASR 517
Query: 562 RKFRKSDPLKSF 573
+ + +DPL++F
Sbjct: 518 ARNKDNDPLQNF 529
>gi|367040143|ref|XP_003650452.1| hypothetical protein THITE_2072362 [Thielavia terrestris NRRL 8126]
gi|346997713|gb|AEO64116.1| hypothetical protein THITE_2072362 [Thielavia terrestris NRRL 8126]
Length = 866
Score = 342 bits (877), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 212/587 (36%), Positives = 321/587 (54%), Gaps = 79/587 (13%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF +LGLD RLV A+ K+ +KPTL+Q+ +IPL L+G+DV+ +A+TGSGKT AY+LP+L
Sbjct: 312 SFADLGLDPRLVQAVAKQSFEKPTLVQRKAIPLALQGQDVLCKARTGSGKTAAYVLPVLS 371
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
+ AAL+LVPTREL Q++ + C + +LT ++ +
Sbjct: 372 GILRRKITDPTPCTAALILVPTRELADQIFKAIEQFSAFCAKDIH--AARLTENVSDAVQ 429
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
R+ LA PD+V+ATP +++ L L+ LVLDEADL+LSYGY++D++ LS
Sbjct: 430 RSLLANIPDVVVATPARAWHSVNSSALSLAK----LQYLVLDEADLVLSYGYDEDMENLS 485
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
+P+G Q ++MSAT S++++ LK + NP +L L E +DE + QF++ C E
Sbjct: 486 RALPKGVQTIMMSATLSTELETLKGMFCRNPTLLDLKEEFGAEDE----KLTQFYVKCGE 541
Query: 267 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
DK L + KL+L++ LIF ID ++RLKLF E+F I+S ILN+ELP N+R+ I+
Sbjct: 542 DDKWLIAYLIFKLQLIKGPCLIFVADIDRSYRLKLFFEQFSIRSCILNSELPVNTRIKII 601
Query: 327 EEFNAGLFDYLIATDDTQTKEKDQ-SDEG---------------GHVDSRKSKKHPKAKL 370
EEFN G++D +IA+D+ D+ + EG G + KK K +
Sbjct: 602 EEFNRGIYDIIIASDEKSELFGDEAAGEGGDDKKESKKKSKAKEGEDNVEPPKKRRKNRK 661
Query: 371 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE 430
D E+GV R GRT RA G ++S V P E+ F +
Sbjct: 662 DEEYGVSR--------------------------GRTARAGRAGIALSFVVPKEL--FGK 693
Query: 431 IKSFVGDDENEDSNIIA--------------PFPLLAQNAVESLRYRAEDVAKSVTKIAV 476
K +D ++A P+ ++ +E+ RYR D ++VTK+A+
Sbjct: 694 HKPTSIKSCEKDEKVLAKIIKQQAKLNRKLEPYN-FNKSQMEAFRYRMNDALRAVTKVAI 752
Query: 477 RESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKP-PASHLRDVPDYLLDAKT 535
RE+R ++LR E+L SE LK +FE NP +L L+HD +L ++ HL+ VPDYLL +
Sbjct: 753 REARTKELRQELLRSETLKRYFEENPTELAHLRHDGELGRRTRQQPHLKHVPDYLLPKEG 812
Query: 536 QEA-----CKMVKLARAAMGNKNSSRRQGPR-RKFR---KSDPLKSF 573
+EA V + ++ R+ P+ R F+ K+DPLK+F
Sbjct: 813 KEALASKQVGFVPFKKEGGKDRRHHRKGKPKGRSFKVGGKNDPLKTF 859
>gi|452004861|gb|EMD97317.1| hypothetical protein COCHEDRAFT_1209171 [Cochliobolus
heterostrophus C5]
Length = 611
Score = 341 bits (874), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 220/577 (38%), Positives = 332/577 (57%), Gaps = 50/577 (8%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF EL L+ RL+ A+ PT +Q +IPL LEG+D++AR+ TG+GKT AYLLP+LH
Sbjct: 66 SFAELQLEPRLLRAIRDLKWASPTAVQSQAIPLALEGRDILARSGTGTGKTAAYLLPILH 125
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
+ +L+L PTRELCQQ+ + +L + C GQ +++V + + +
Sbjct: 126 KTLQRKQ-------TSLILAPTRELCQQIANVAKSLAQHC-GQ-EIRVRNIAGKESDAVV 176
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
+AALA P++V+ATP T + S + L LV+DE DL+ YG+ +D+ ++
Sbjct: 177 KAALADKPEVVVATPARA----WTNINNSTLAVNDLGTLVVDEGDLINGYGFAEDMTNIA 232
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
IP G Q +++SAT S+DV+ L L+ +P IL L ++ KD K V+Q+ + +E
Sbjct: 233 REIPVGVQKIVLSATLSTDVEALGSLLCTDPVILKLADLD--KDS---KRVKQYVLKVAE 287
Query: 267 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
+K L I + KL+L++ K ++F +D ++R+KLFLE+FGIKSA+LN+ELP SR HI+
Sbjct: 288 DEKFLLIYAMFKLQLIKGKTIVFVGDVDRSYRVKLFLEQFGIKSAVLNSELPLASRTHIV 347
Query: 327 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 386
EEFN +++ LIA+D+ DE +K+K++ +K DS GV RGIDF NV
Sbjct: 348 EEFNKNVYNILIASDENDV--VGVQDEDSKPKKKKAKRNNDSK-DS--GVSRGIDFLNVA 402
Query: 387 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG--DDE----- 439
V+NF+ P N Y HRIGRT RA +G ++S + P E + SF G +DE
Sbjct: 403 CVLNFDFPGNYKSYFHRIGRTARAGKSGTAISFIIPKEKYRKHKPTSFAGCENDEEVLKK 462
Query: 440 ----NEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLK 495
E+ + + + +E RYR D KSVT+IA+RE+R +++ +E+ S+KL
Sbjct: 463 VEKHQEEGQKLENYNFDMKR-LEPFRYRFADALKSVTRIAIREARIKEIHSELAKSQKLS 521
Query: 496 AHFEVNPKDLDLLKHDKDLSK----KPPASHLRDVPDYLL-DAKTQEACKMVKLARAAMG 550
+FE NP+ L L+HD+ L+ +P HL+ VPDYLL K E V L
Sbjct: 522 RYFEENPEALAHLRHDQTLNHPLRIQP---HLKHVPDYLLPGGKKPEDVGFVGLNLPKPD 578
Query: 551 NKNSSRRQGPR--RKFRKSDPLKSFSAEPTKRAGKGR 585
K + +G + ++ K DPLK+F+A GKG+
Sbjct: 579 RKRFVKGRGRKVVKRNGKVDPLKTFNAR-----GKGK 610
>gi|451853432|gb|EMD66726.1| hypothetical protein COCSADRAFT_138680 [Cochliobolus sativus
ND90Pr]
Length = 611
Score = 340 bits (873), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 219/585 (37%), Positives = 333/585 (56%), Gaps = 52/585 (8%)
Query: 20 AEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFA 79
AE SF EL L+ RL+ A+ PT +Q +IPL LEG+D++AR+ TG+GKT A
Sbjct: 59 AEPTPFASFAELQLEPRLLRAIRDLKWASPTAVQSQAIPLALEGRDILARSGTGTGKTAA 118
Query: 80 YLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTS 139
YLLP+LH+ +L+L PTRELCQQ+ + +L + C +++++ +
Sbjct: 119 YLLPILHKTLQRKQ-------TSLILAPTRELCQQIANVAKSLAQHCSQEIRVRNIAGKE 171
Query: 140 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE 199
S + ++AALA P++V+ATP T + S + L LV+DE DL+ YG+
Sbjct: 172 S--DAVVKAALADKPEVVVATPARA----WTNINNSTLAVNDLGTLVVDEGDLMNGYGFA 225
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
+D+ ++ IP G Q +++SAT S+DV+ L L+ +P IL L ++ KD K V+Q
Sbjct: 226 EDMTNIAREIPVGVQKIVLSATLSTDVEALGSLLCIDPVILKLADLD--KDS---KRVKQ 280
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+ + +E +K L I + KL+L++ K ++F +D ++R+KLFLE+FGIKSA+LN+ELP
Sbjct: 281 YVLKVAEDEKFLLIYAMFKLQLIKGKTIVFVGDVDRSYRVKLFLEQFGIKSAVLNSELPL 340
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
SR HI+EEFN +++ LIA+D+ DE +K+K++ +K DS GV RG
Sbjct: 341 ASRTHIVEEFNKNVYNILIASDENDV--VGVQDEDSKPKKKKAKRNNDSK-DS--GVSRG 395
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDE 439
IDF NV V+NF+ P N Y HRIGRT RA +G ++S + P E + SF G +
Sbjct: 396 IDFLNVACVLNFDFPGNYKSYFHRIGRTARAGKSGTAISFIIPKEKYRKHKPTSFAGCEN 455
Query: 440 NEDSNIIAPFPLLAQNA------------VESLRYRAEDVAKSVTKIAVRESRAQDLRNE 487
+E+ ++ Q +E RYR D KSVT+IA+RE+R +++ +E
Sbjct: 456 DEE--VLKKVEKHQQEGQKLENYNFDMKRLEPFRYRFADALKSVTRIAIREARIKEIHSE 513
Query: 488 ILNSEKLKAHFEVNPKDLDLLKHDKDLSK----KPPASHLRDVPDYLL-DAKTQEACKMV 542
+ S+KL +FE NP+ L L+HD+ L+ +P HL+ VPDYLL K E V
Sbjct: 514 LAKSQKLSRYFEENPEALAHLRHDQTLNHPLRIQP---HLKHVPDYLLPGGKKPEDVGFV 570
Query: 543 KLARAAMGNKNSSRRQGPR--RKFRKSDPLKSFSAEPTKRAGKGR 585
L K + +G + ++ K DPLK+F+A GKG+
Sbjct: 571 GLNLPKPDRKRFVKGRGRKVVKRNGKVDPLKTFNAR-----GKGK 610
>gi|254573594|ref|XP_002493906.1| hypothetical protein [Komagataella pastoris GS115]
gi|238033705|emb|CAY71727.1| hypothetical protein PAS_chr4_0966 [Komagataella pastoris GS115]
gi|328354273|emb|CCA40670.1| RNA helicase [Komagataella pastoris CBS 7435]
Length = 601
Score = 340 bits (873), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 220/609 (36%), Positives = 326/609 (53%), Gaps = 72/609 (11%)
Query: 19 EAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLIL-EGKDVVARAKTGSGKT 77
EA + +F+ GLD R++ A+N+ G + PTL+Q +IPL L E +DV+A+A TG+GKT
Sbjct: 9 EAYVDNSTTFDSFGLDPRILQAINELGYEHPTLVQAKAIPLALQEKRDVIAKASTGTGKT 68
Query: 78 FAYLLPLLHRLF--NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVV 135
AY +P+L + N +P A++LVPTREL QV + +L C +V K +
Sbjct: 69 AAYCIPILQSILSNNNRTP----GIQAVILVPTRELSVQVDKFLDSLTSFCSKKV--KCL 122
Query: 136 QLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLS 195
L++S+ A L+ P+IVI+TP + + L SK LK V+DE DL+ S
Sbjct: 123 NLSNSVSEQIHLAQLSELPEIVISTPTKLLQLLKKS---SKVNLSQLKYFVIDEVDLIFS 179
Query: 196 YGYEDDLKALSAV---IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEV 252
YGY+DDLK L+ + + Q LMSAT + DV++LK L P +L L + D +
Sbjct: 180 YGYDDDLKELTELYLNLQNKIQVFLMSATMNEDVEQLKALYCKAPAVLKLND-----DAI 234
Query: 253 IPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAI 312
N+ Q++ E +K L + KL L++ K LIF N ID +RLKLFLE+FGIKS +
Sbjct: 235 KSSNLVQYYCKTGELEKFLLSYVIFKLNLIKGKTLIFVNNIDRGYRLKLFLEQFGIKSCL 294
Query: 313 LNAELPQNSRLHILEEFNAGLFDYLIATDD-------------------TQTKEKDQSDE 353
LN ELP +SR+H +++FN ++ LIATD+ T EK +
Sbjct: 295 LNNELPLSSRMHTVDQFNKNVYRLLIATDESSVGEEREEDFLEEANETETNADEKVAEKK 354
Query: 354 GGHVDSRKS--------------KKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAG 399
++ K+ K + K+ + G RG+DFKNV V+NF++P A
Sbjct: 355 STENNTEKTEENEDGEEEIEEEEKINSKSSKQRDSGFSRGVDFKNVACVLNFDLPTTAKS 414
Query: 400 YVHRIGRTGRAYNTGASVSLVSPDEM---KIFEEIKSFVGDD---------ENEDSNIIA 447
YVHR+GRT RA +G ++S V + I +KS D+ + + +
Sbjct: 415 YVHRVGRTARAGKSGMALSFVVEKRLWNKHIASNLKSAKRDEKILARIMTAQGRIGSKLE 474
Query: 448 PFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDL 507
P+ ++ VE RYR ED ++VT A+R +R ++++ EI+ +EKL+ HFE NP+DL
Sbjct: 475 PYHF-NESQVEGFRYRMEDAFRAVTATAIRNARIKEIKQEIMVNEKLQRHFEENPQDLLS 533
Query: 508 LKHDKDLSKKPPASHLRDVPDYLL--DAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFR 565
L+HDK+L HL+ VPDYLL A++ V N N ++GPR R
Sbjct: 534 LRHDKELHPNRVQPHLKRVPDYLLPKGARSHPTVGFVPFKNT---NPNKHEKRGPRGGVR 590
Query: 566 KS-DPLKSF 573
K +PLK F
Sbjct: 591 KRVNPLKKF 599
>gi|257215840|emb|CAX83072.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [Schistosoma japonicum]
Length = 529
Score = 340 bits (873), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 202/527 (38%), Positives = 314/527 (59%), Gaps = 38/527 (7%)
Query: 23 EEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLL 82
E + F +L LD RL+ A+ KPT IQQA IPL+ +V AKTGSGKT A+ +
Sbjct: 2 ESIEEFHQLNLDQRLLKAIADLNWIKPTDIQQAVIPLVFAKHCIVVHAKTGSGKTAAFAI 61
Query: 83 PLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQ-LKVVQLTSSM 141
P+L+ L E S A + ++L PT+ELC QV S + L CK + + V +++S
Sbjct: 62 PVLNDLLQEKQFASCQATSVVILTPTKELCSQVASNIKYL---CKYAAKSISSVDISASY 118
Query: 142 PASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDD 201
++ + PDIVI TP + + L +G L K L+ +V+DEADL+ ++G+E +
Sbjct: 119 DIDQIKPLILENPDIVIGTPSRLMQVLRSGFLSLKH----LRCIVVDEADLIFTFGHEAE 174
Query: 202 LKALSAVIPRGCQCLLMSATSSSDVDKL--KKLILHNPYI-LTLPEVGDVKDEVIPKNVQ 258
++ L +P+ Q +LMSAT D K+ + L+ H ++ + LP+ + +P + Q
Sbjct: 175 IRDLRTYLPQKIQAILMSATLD-DTSKIIRRYLVKHANWVRVELPD-----EAFLPGDNQ 228
Query: 259 --QFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAE 316
Q+ IS + DK ++ L KL +V+ K LIFTN++D ++L+LFL++FGI++A+LN+E
Sbjct: 229 LTQYIISAEDEDKYAILIALFKLRIVRGKTLIFTNSVDRCYKLRLFLDEFGIRAALLNSE 288
Query: 317 LPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGV 376
LP SR HI+++FN GL+DYL+ATD++Q S E S KS K + + D+E+GV
Sbjct: 289 LPVKSRSHIIDQFNRGLYDYLLATDESQADHNTPSSEV----SNKSSKRIRHR-DTEYGV 343
Query: 377 VRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF-- 434
RGIDF+ V VINF+ P YVHR+GRT RA G ++S VS E ++++
Sbjct: 344 SRGIDFQMVSNVINFDFPPTPILYVHRVGRTARADQMGTALSFVSKAEESRLVDVEALLN 403
Query: 435 ----------VGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDL 484
V +++N S++ P+ + V+ +YRA DV + +T+ VRE+R +++
Sbjct: 404 PSGAAVVKPGVANEKNVASSVFRPYQ-FRLSEVDGFKYRAADVMRHITRKVVREARLKEI 462
Query: 485 RNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 531
+ E+LNSE+LK +F+ + DL+ L+HDK L K HL+DVPDYL+
Sbjct: 463 KIELLNSERLKGYFQDHIPDLEALRHDKPL-KHIAQPHLKDVPDYLV 508
>gi|429858013|gb|ELA32849.1| ATP dependent RNA helicase [Colletotrichum gloeosporioides Nara
gc5]
Length = 577
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 221/590 (37%), Positives = 331/590 (56%), Gaps = 50/590 (8%)
Query: 8 PSKEVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVV 67
P +E + +E A +E +F +LGLD RLV + + + PT +QQ +IPL L+GKDVV
Sbjct: 13 PKEEKRAKTQEPQPAVKELTFSDLGLDTRLVQGVAAESFKDPTPVQQKAIPLALDGKDVV 72
Query: 68 ARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCK 127
A+A GSGKT AY+LP+L + + S A A++LVPTREL QV + C
Sbjct: 73 AKAPCGSGKTAAYVLPVLSSILKRKTTDSSPATTAVILVPTRELADQVLKAIEQFSAYCA 132
Query: 128 GQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVL 187
+ V+L + + R+ L+ PDIVI+TP + +L + L LVL
Sbjct: 133 KDIH--AVKLVDKISDAVQRSLLSNFPDIVISTPATAWR----NILNDALSLEKLSYLVL 186
Query: 188 DEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGD 247
DEADL+LSYGY +DL+ ++ +P+G Q L+MSAT S+DV L+ + P +L L +
Sbjct: 187 DEADLILSYGYNEDLENIARKLPKGVQLLMMSATLSTDVTSLQGIFARKPTVLDLDD--- 243
Query: 248 VKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFG 307
+E N+ QF +SC+E +K L + KL+LV+ K LIF N +D ++RLKLFLE+F
Sbjct: 244 --EETEGDNLSQFVVSCAEDEKFLLAFIIFKLKLVKGKCLIFVNDVDRSYRLKLFLEQFQ 301
Query: 308 IKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ---TKEKDQSDEGGHVDSRKSKK 364
++S ILN+ELP SR H+LEEFN G++D +IA+D+ +EKD +E G + K K+
Sbjct: 302 VRSCILNSELPITSRAHVLEEFNRGVYDIIIASDEKSAMGVEEKDAEEEDGEGEKEKEKE 361
Query: 365 HPKAKL--------DSEFGVVRGIDFKNV----HTVINFEMPQNAAGYVHRIGRTGRAYN 412
K D EFGV RGIDFKNV ++F +P+ ++R +
Sbjct: 362 KESKKKNKKKSSKRDVEFGVSRGIDFKNVAAGQRMALSFYVPKE----LYR-------KH 410
Query: 413 TGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVT 472
S+ DE K+ +IK + + + P+ ++ +++ RYR +D ++VT
Sbjct: 411 MPTSIETAENDE-KVLAKIKR----QQAKQGKEVKPYNFKKEH-LDAFRYRLDDALRAVT 464
Query: 473 KIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL- 531
K+AVRE+R ++L+ E+L SEKLK +FE NP +L L+HD +L HL+ +P+YLL
Sbjct: 465 KVAVREARMRELKQELLKSEKLKRYFEENPTELQHLRHDGELRTARQQPHLKHIPEYLLP 524
Query: 532 ----DAKTQEACKMVKLARAA--MGNKNSSRRQGPRRKFRKSDPLKSFSA 575
D+ T MV + + NK +G + RK +PLK+F A
Sbjct: 525 KEGKDSLTSNEVGMVPFRKVGGKLRNKKGKFGRGKKVGTRKVNPLKTFKA 574
>gi|195438252|ref|XP_002067051.1| GK24230 [Drosophila willistoni]
gi|194163136|gb|EDW78037.1| GK24230 [Drosophila willistoni]
Length = 555
Score = 339 bits (869), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 204/519 (39%), Positives = 308/519 (59%), Gaps = 32/519 (6%)
Query: 19 EAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTF 78
+ +A + F EL LD R++ A+ G +PTLIQ +IPL+LEGKDVV RA+TGSGKT
Sbjct: 3 QTQANKTLQFHELELDQRILKAVAYLGWHQPTLIQSTAIPLLLEGKDVVVRARTGSGKTA 62
Query: 79 AYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLT 138
Y LPL+ ++ N S+ +ALVL PT+ELC+Q + L E C G+V ++V +
Sbjct: 63 TYALPLIQKILNSKLNASEQCVSALVLAPTKELCRQSRLVIEKLAESC-GKV-VRVADIA 120
Query: 139 -SSMPASDLRAALAGPPDIVIATPG-CMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSY 196
SS A R AL+ PDIV++TP + + GV+ K ++ LV+DEADL+ ++
Sbjct: 121 GSSNDAVTQRHALSERPDIVVSTPSKILAHAEAGGVVDLK----HIETLVVDEADLIFAF 176
Query: 197 GYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN 256
GYE D K L +P Q +L+SAT + DV ++K L L NP L L E E++P++
Sbjct: 177 GYEKDFKKLIKHLPPIYQAVLVSATITDDVVRMKGLCLKNPVTLKLEE-----PELVPQD 231
Query: 257 -VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNA 315
+ I E DK + LLKL LV+ K++IF N +D ++++LFLE+ GI++ +LN+
Sbjct: 232 QLTHQRILAEENDKPAILYALLKLRLVRGKSIIFVNNVDRCYKVRLFLEQIGIRACVLNS 291
Query: 316 ELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFG 375
ELP N R+H + +FN G +D +IA+D+ ++ GG SR + +
Sbjct: 292 ELPANIRIHTISQFNKGSYDIIIASDEHYLEK-----PGGKSSSRSDHESSSS------- 339
Query: 376 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
RGIDF+ V+ VINF+ P++ Y+HR GRT R N G+ +SLVS E + E +++ +
Sbjct: 340 --RGIDFQCVNNVINFDFPRDVTSYIHRAGRTARGNNKGSVLSLVSIKEGPVNEAVENKL 397
Query: 436 GDD---ENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSE 492
+ +D II + + +ES RYRA+D ++ T++AV + R +++++EILN E
Sbjct: 398 RSTFAAQADDEQIIKNYQ-FKMDEIESFRYRAQDCWRAATRVAVHDYRMREIKSEILNCE 456
Query: 493 KLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 531
KLK FE N +DL L+HDK SHL DVP+Y++
Sbjct: 457 KLKGFFEENKRDLQALRHDKPSRTIKVQSHLSDVPEYIV 495
>gi|71024867|ref|XP_762663.1| hypothetical protein UM06516.1 [Ustilago maydis 521]
gi|46099685|gb|EAK84918.1| hypothetical protein UM06516.1 [Ustilago maydis 521]
Length = 672
Score = 338 bits (868), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 242/650 (37%), Positives = 339/650 (52%), Gaps = 107/650 (16%)
Query: 6 EIPSKEVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKD 65
E+PS +E+AE F + LD RL+ AL G PT IQQ +IPL L GKD
Sbjct: 47 ELPS-------QEDAERLGFNVFSHI-LDPRLLRALADLGYGIPTPIQQKAIPLALAGKD 98
Query: 66 VVARAKTGSGKTFAYLLPLLHRLFNESSPKSK-----LAPAALVLVPTRELCQQVYSEVM 120
++ARA+TGSGKT AY LPLL ++ + S +K ALVLVPTREL +QV+ +
Sbjct: 99 ILARARTGSGKTLAYGLPLLQKVLDAKSAVAKSDANHQLTRALVLVPTRELAEQVFRHLS 158
Query: 121 ALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD 180
+IE + ++L V +S R L+ PD+VIATP L L KS +
Sbjct: 159 VVIEYVRDDIRLVNVAREASEKVQ--RLLLSEKPDVVIATPSKALNYLQNASLDLKSGME 216
Query: 181 SLKILVLDEADLLLSYGYEDDLKAL--SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPY 238
SL I DEADL+LSYG++ D+K+L + +P Q LMSAT +SDV KLK L+L NP
Sbjct: 217 SLAI---DEADLILSYGHDADVKSLLGANFLPSHFQSFLMSATMTSDVSKLKGLLLRNPV 273
Query: 239 ILTLPEVGDVKDEVIP-KNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAF 297
+L L + DE N+ QF+ +E DK L +LKL+L++ KA++F N ++ +
Sbjct: 274 VLKL----NHDDEAASGSNLVQFYTKTTEEDKFLLAYVILKLKLIRGKAILFVNELERGY 329
Query: 298 RLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD---------------- 341
RLKLFLEKFG+++ +LNAELP NSR I+EEFN G FDY++ATD
Sbjct: 330 RLKLFLEKFGLRACVLNAELPINSRYSIVEEFNKGKFDYIVATDEPTGASGNMQDDEGDD 389
Query: 342 -------------DTQT--------KEKDQSDEGGHVDSRKSK--KHPKAKLD-SEFGVV 377
D Q K K G S KSK +H K K SE+GV
Sbjct: 390 EEEDADEREADEVDEQAEDQREAGKKRKSSEHAGAETKSNKSKVSQHRKGKNGASEYGVS 449
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RG+DF NV VINF++P + Y+HR+GRT R +G ++S V P + ++ +
Sbjct: 450 RGVDFINVSCVINFDLPTSVDSYIHRVGRTARGGASGTALSFVVPSD-QVGRSKYLYCAS 508
Query: 438 DENEDS-----NIIAPFPLLAQNAVESLRYRAEDVAKSVT-KIAVRESRAQDLRNEILNS 491
++S N + LL +A++ +Y + + ++ K A++E L+NEIL S
Sbjct: 509 TTRDESVFKMLNKPSTISLLG-SALQEWKYDSSASPRRLSEKHAIKE-----LKNEILTS 562
Query: 492 EKLKAHFEVNPKDLDLLKHDKD-LSKKPPASHLRDVPDYLLDAKTQEACKMVKLA----- 545
KL++HFE +P DL L+HDK L+ + SHL+ VP YL+ K+ K +
Sbjct: 563 SKLQSHFEDHPDDLAFLQHDKALLTSRAQQSHLKHVPQYLVPKIINPGAKLTKSSGSEYK 622
Query: 546 ---------------------RAAMGNKNSSRRQGPRRKFRKSDPLKSFS 574
R + KN++ G RK K DPL+ FS
Sbjct: 623 GYVPKNKIKDGANDRKNKGGKRRSSTGKNTTGAAGKSRK--KVDPLRKFS 670
>gi|195047250|ref|XP_001992302.1| GH24281 [Drosophila grimshawi]
gi|193893143|gb|EDV92009.1| GH24281 [Drosophila grimshawi]
Length = 602
Score = 338 bits (868), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 227/626 (36%), Positives = 330/626 (52%), Gaps = 88/626 (14%)
Query: 21 EAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAY 80
E +E+ F EL LD R++ A+ + G +PTLIQ +IPL+L+G DVV RA+TGSGKT AY
Sbjct: 5 ETQEKLQFHELELDQRILKAIAQLGWVQPTLIQSTAIPLLLDGNDVVVRARTGSGKTAAY 64
Query: 81 LLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLT-S 139
LPL+ ++ N S+ +ALVL PT+ELC+Q V L E C G+V ++V + S
Sbjct: 65 ALPLIQKILNSKLNASEQCVSALVLAPTKELCRQSRLVVEQLAESC-GKV-IRVADIAGS 122
Query: 140 SMPASDLRAALAGPPDIVIATPGCMPKCL--STGVLQSKSFSDSLKILVLDEADLLLSYG 197
S + R ALA PDIV+ATP + + TG++ + ++ LV+DEAD++ ++G
Sbjct: 123 SNDMATQRHALAERPDIVVATPSKILAHVEAGTGIVDLQ----QIETLVVDEADMIFAFG 178
Query: 198 YEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNV 257
YE D K L +P Q +L+SAT + DV ++K L L N L L E V E +
Sbjct: 179 YEKDFKRLMKHLPPIYQAILVSATITDDVVRMKGLCLKNAITLKLEEPELVSLEQLTHQ- 237
Query: 258 QQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAEL 317
I E DK + LLKL L+Q K++IF NT+D ++++LFLE+FGI+S +LN+EL
Sbjct: 238 ---RILAEENDKPAILCALLKLTLIQGKSIIFVNTVDRCYKVRLFLEQFGIRSCVLNSEL 294
Query: 318 PQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVV 377
P N R+H + +FN G +D +IA+D+ EK RKS+ D E
Sbjct: 295 PANMRIHTISQFNRGTYDIIIASDE-HILEKPAGK-----TQRKSQHS-----DHESSTS 343
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM------------ 425
RGIDF+ V+ VINF+ P++ Y+HR GRT R N G+ +S VS E+
Sbjct: 344 RGIDFQGVNNVINFDFPRDVTSYIHRAGRTARGNNKGSVLSFVSVKELPINLAVEEKLRS 403
Query: 426 -------------------------------KIFEEIK-SFVGDDENEDSNIIAPFPLLA 453
K E++K SF E +I+ +
Sbjct: 404 TFGRETLHKKDNAVTLPSSSSSDDNKKADNSKTVEQLKRSFANSLERPQEDIVDDIIKIY 463
Query: 454 Q---NAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKH 510
Q VE+ RYRA+D ++ T++AV ++R ++++ EILN EKLK FE N +DL L+H
Sbjct: 464 QFKMEEVEAFRYRAQDCWRAATRVAVHDTRIREIKTEILNCEKLKGFFEENKRDLQALRH 523
Query: 511 DKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMG------NKNSSRRQGPRRKF 564
DK SHL VP+Y+L L R A+G +R G + F
Sbjct: 524 DKPSRTIKVHSHLAHVPEYILPK---------ALKRVAIGPPPTHTAYKQARTTGAKAAF 574
Query: 565 RK--SDPLKSFSAEPTKRAGKGRMKR 588
++ +DPL + KR G+ + KR
Sbjct: 575 QRQSNDPLMVSEVDYGKRRGRPKSKR 600
>gi|391337668|ref|XP_003743188.1| PREDICTED: probable ATP-dependent RNA helicase DDX56-like
[Metaseiulus occidentalis]
Length = 506
Score = 338 bits (866), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 190/510 (37%), Positives = 301/510 (59%), Gaps = 23/510 (4%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F E+GLD R+V A+ + G ++PT IQ+ +IP L+GKD++ARA+TGSGKT + +P + +
Sbjct: 11 FHEMGLDERIVKAIARLGWKQPTPIQEQAIPFALKGKDILARARTGSGKTAGFAVPAIQK 70
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+ + S LVL P++ELC+Q+ +AL + C G VQ VV + + S LR
Sbjct: 71 VLEAKAQGSSQNVTVLVLAPSKELCKQICRHFVALGQCCGGLVQ--VVDVAEHVQLSVLR 128
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
L PD+V+ TP + + G L SLKIL++DEADL+ ++G E D + L
Sbjct: 129 PQLLEKPDVVVGTPSRILAHIKAGNLD----VSSLKILMVDEADLVFTFGQEKDTEQLLK 184
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 267
+P Q ++ SAT + DV LK+L+LHNP L L E +E + Q+ + C E
Sbjct: 185 QLPPIYQAIVSSATLNEDVLSLKRLVLHNPITLRLDENSLTDNE----GLTQYVVKCEEL 240
Query: 268 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 327
DK + L +L+L++ K LIF N++D +R KLFL++F ++S +LN+ELP +SR +++
Sbjct: 241 DKHAILAALFQLKLIKGKTLIFLNSVDRGYRTKLFLDQFAVRSCVLNSELPLSSRQVVID 300
Query: 328 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 387
FN G +D ++ TDD+ + +S + R++ + EF RG+DF+ V
Sbjct: 301 RFNEGRYDVIVVTDDSNLEASQKSKKKKGSKQRQN--------EGEFAASRGLDFQFVSN 352
Query: 388 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA 447
VIN E P + YVHR+GRT RA N G +++ VS EM I++E+++ + E N+
Sbjct: 353 VINLEFPPSVEAYVHRVGRTARAGNKGTALNFVSVREMPIYKEVEARM---IAEKKNMFK 409
Query: 448 PFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDL 507
P+ + +E +YRA+ S+ K +R++R +D++ E+LNSEKLK FE NP++ L
Sbjct: 410 PYR-FKIDEIEGFKYRAQTALNSLQKKVIRDARLRDIKEEMLNSEKLKTFFESNPRETSL 468
Query: 508 LKHDKDL-SKKPPASHLRDVPDYLLDAKTQ 536
L+HD+ L +K + L+ VP+Y++ Q
Sbjct: 469 LRHDRALRTKGAKHTSLKHVPEYIVPPTLQ 498
>gi|441650301|ref|XP_004091008.1| PREDICTED: probable ATP-dependent RNA helicase DDX56 isoform 2
[Nomascus leucogenys]
Length = 507
Score = 338 bits (866), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 215/556 (38%), Positives = 302/556 (54%), Gaps = 67/556 (12%)
Query: 21 EAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAY 80
E E FE +GLD RL+ A+ G +PTLIQ+ +IPL LEGKD++ARA+TGSGKT AY
Sbjct: 2 EDSEALGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAY 61
Query: 81 LLPLLHRLFNE--SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLT 138
+P+L L + + P + A LVLVPT+EL +Q S + L C V +V ++
Sbjct: 62 AIPMLQLLLHRKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCARDV--RVANVS 119
Query: 139 SSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGY 198
++ ++ RA L PD+V+ TP + LS S DSL++LV+DEADLL S+G+
Sbjct: 120 AAEDSASQRAVLMEKPDVVVGTPS---RILSHLQQDSLKLRDSLELLVVDEADLLFSFGF 176
Query: 199 EDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ 258
E++LK+L +PR Q LMSAT + DV LK+L+LHNP L L E P +Q
Sbjct: 177 EEELKSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE----SQLPGPDQLQ 232
Query: 259 QFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAEL 317
QF + C +E DK L + LLKL L++ K+L+F NT+D ++RL+LFLE+F I S +LN EL
Sbjct: 233 QFQVVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLDRSYRLRLFLEQFSIPSCVLNGEL 292
Query: 318 PQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVV 377
P SR D E GV
Sbjct: 293 PLRSRAS----------------------------------------------DPEAGVA 306
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RGIDF +V V+NF++P Y+HR GRT RA N G ++ V P E +I+ +
Sbjct: 307 RGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSHLGKIEELLSG 366
Query: 438 DENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAH 497
+ S I+ P+ + +E RYR D +SVTK A+RE+R ++++ E+L+SEKLK +
Sbjct: 367 ENR--SPILLPYQFRMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTY 423
Query: 498 FEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRR 557
FE NP+DL LL+HD L HL VPDYL+ + L R K S
Sbjct: 424 FEDNPRDLQLLRHDLPLHPAVVKPHLGHVPDYLVPPALR------GLVRPHKKRKKLSSS 477
Query: 558 QGPRRKFRKSDPLKSF 573
++ + +PL+SF
Sbjct: 478 CRKAKRVKSQNPLRSF 493
>gi|238497093|ref|XP_002379782.1| ATP dependent RNA helicase (Dbp9), putative [Aspergillus flavus
NRRL3357]
gi|220694662|gb|EED51006.1| ATP dependent RNA helicase (Dbp9), putative [Aspergillus flavus
NRRL3357]
Length = 526
Score = 337 bits (864), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 197/530 (37%), Positives = 301/530 (56%), Gaps = 52/530 (9%)
Query: 82 LPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSM 141
L +LF + S K A L+LVPTREL +QV + V C V + V LT +
Sbjct: 8 LFFRRKLFTDPSFK---ATTGLILVPTRELAEQVQNVVTTFAAFCGKDV--RSVNLTQKV 62
Query: 142 PASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDD 201
+ R LA PD+V++TP + L + L ++L LV+DEADL+LSYGYE+D
Sbjct: 63 SDAVQRTMLADYPDLVVSTPARVVTNLGSSALSL----ENLTHLVIDEADLVLSYGYEED 118
Query: 202 LKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW 261
+ AL+ IPRG Q LMSAT + +VD LK L +P L L + D V QF
Sbjct: 119 INALAKAIPRGVQTFLMSATLTDEVDTLKGLFCRSPVTLKLEDKDDQ-----GAGVSQFV 173
Query: 262 ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 321
+ C+E +K L + KL+L++ K +IF + +D +R+KLFLE+FGIKS +LN+ELP NS
Sbjct: 174 VRCAEDEKFLLTYVIFKLQLIKGKVIIFVDDVDRCYRVKLFLEQFGIKSCVLNSELPINS 233
Query: 322 RLHILEEFNAGLFDYLIATDDTQ------TKEKDQSDEGGHVDSR------KSKKHPKAK 369
R+H+++EFN G++D LIA D+ + +K+ +++E G D KSK+ +
Sbjct: 234 RIHVVQEFNKGVYDILIAADEQEVIGARKSKKSKETEEAGSSDEDEGEPEDKSKRRKVSG 293
Query: 370 LDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM---- 425
+ ++G+ RGIDF+NV V+NF++P + Y HRIGRTGRA TG ++S V P +
Sbjct: 294 KEKDYGISRGIDFQNVACVLNFDLPSTSKSYTHRIGRTGRAGKTGMALSFVIPKDQHGKH 353
Query: 426 --------KIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVR 477
K E + + + + + + + P+ VE+ RYR D ++VT++AV+
Sbjct: 354 RPTSTATSKHDESVLAKIVKRQGKLGHEVKPYHF-EMKQVEAFRYRMTDALRAVTRLAVQ 412
Query: 478 ESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQE 537
E+RA+++R E++ SEKLK HFE NP++L L+HD +L HL+ +P+YL+ AK ++
Sbjct: 413 EARAREIRQELIKSEKLKRHFEENPEELRQLRHDDELRSARVQPHLKHIPEYLMPAKGKK 472
Query: 538 ACKMVKLARAAMGNKNS---------SRRQGPRRKF----RKSDPLKSFS 574
+ + +N +R +G RKF +K DPLK+F+
Sbjct: 473 GLSSGDVGFVSFRKQNENRIRKAREKNRGKGNGRKFAGVKKKVDPLKTFN 522
>gi|357616261|gb|EHJ70100.1| RNA helicase [Danaus plexippus]
Length = 559
Score = 335 bits (859), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 210/566 (37%), Positives = 321/566 (56%), Gaps = 30/566 (5%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F E+ LD RL+ A+++ G PTLIQ+ +IPL+LEGKDV+ RA+TGSGKT A+ +P++ +
Sbjct: 9 FHEMELDDRLLKAISQLGWPHPTLIQETAIPLLLEGKDVLMRARTGSGKTAAFTIPVIQK 68
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+ N + + AL+L P++ELC Q+ S V L C +V + + ++S+ +
Sbjct: 69 ILNLKNTSAHQCIRALILSPSKELCGQITSVVGHLTLKCAREV--RCIDISSNGDMQIQK 126
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
+ LA PDIV++TP + L+ + + + +LV+DEADL+ S+GYE+++K L
Sbjct: 127 SLLADKPDIVVSTPS---RVLAHLKANNVRLKEDIAMLVVDEADLVFSFGYENEIKELLE 183
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-VQQFWISCSE 266
+P+ Q +L SAT S DV LKK++L NP L L E E+ P +Q + + E
Sbjct: 184 HLPKIYQAVLASATLSDDVLSLKKIVLRNPVTLKLEE-----PELAPSTQLQHYHLFAEE 238
Query: 267 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
DK + LLKL L++ K +IF T+D ++LKL+LE+F I S +LN+ELP R +
Sbjct: 239 DDKAAILYALLKLNLIRGKTIIFVRTVDRCYKLKLYLEQFKIGSCVLNSELPAAVRCMSV 298
Query: 327 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHV--DSRKSKKHPKAKLDSEFGVVRGIDFKN 384
E+FN G + ++A+D+ +E D GG + ++ K K+ K + D E GV RGIDF++
Sbjct: 299 EQFNRGRYQIIVASDEKALEEPD----GGMMLEETGKKKQKSKRRKDKESGVSRGIDFQH 354
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSN 444
V VINF+ P + YVHR GRT R + G+ +S VS E + +K + N
Sbjct: 355 VSNVINFDFPLDVTAYVHRAGRTARGTSQGSVLSFVSIREKPLMNAVKEHLTKCFN-GQK 413
Query: 445 IIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKD 504
++ + A + VE RYR+ D ++VT++AVRE+R ++R E+LN ++L+ +FE NP D
Sbjct: 414 VLQKYS-FALDEVEGFRYRSRDAWRAVTRVAVREARLSEIRRELLNCKRLQGYFEENPTD 472
Query: 505 LDLLKHDKDLSKKPPASHLRDVPDYLL------DAKTQEACKMVKLARAAMGNKNSSRRQ 558
L LK DK L L VP+YLL D E +N +
Sbjct: 473 LAALKRDKALHTVRLQPQLAHVPEYLLPAALRTDGPEPEPAAPDAPPAKKKKQQNFGSVK 532
Query: 559 GPRRKFRKSDPLKSF-----SAEPTK 579
+ + R+ DPLKSF SA P+K
Sbjct: 533 RHKYQARQRDPLKSFAVKAASASPSK 558
>gi|402863584|ref|XP_003896087.1| PREDICTED: probable ATP-dependent RNA helicase DDX56 isoform 2
[Papio anubis]
Length = 506
Score = 334 bits (857), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 215/556 (38%), Positives = 305/556 (54%), Gaps = 68/556 (12%)
Query: 21 EAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAY 80
E E FE +GLD RL+ A+ G +PTLIQ+ +IPL LEGKD++ARA+TGSGKT AY
Sbjct: 2 EDSEALGFEHMGLDPRLLQAVTDMGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAY 61
Query: 81 LLPLLHRLFNE--SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLT 138
+P+L L + + P + A LVLVPT+EL +Q S + L C V +V ++
Sbjct: 62 AIPMLQLLLHRKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCARDV--RVANVS 119
Query: 139 SSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGY 198
++ ++ RA L PD+V+ TP + LS S DSL++LV+DEADLL S+G+
Sbjct: 120 AAEDSASQRAMLMEKPDVVVGTPS---RILSHLQQDSLKLRDSLELLVVDEADLLFSFGF 176
Query: 199 EDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ 258
E++LK+L +PR Q LMSAT + DV LK+L+LHNP L L E P +Q
Sbjct: 177 EEELKSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE----SQLPGPDQLQ 232
Query: 259 QFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAEL 317
QF + C +E DK L + LLKL L++ K+L+F NT++ ++RL+LFLE+F I + +LN EL
Sbjct: 233 QFQVVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGEL 292
Query: 318 PQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVV 377
P SR D E GV
Sbjct: 293 PLRSRAS----------------------------------------------DPEAGVA 306
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RGIDF +V V+NF++P Y+HR GRT RA N G ++ V P E +I+ +
Sbjct: 307 RGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPPEQSHLGKIEELLSG 366
Query: 438 DENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAH 497
+ I+ P+ + +E RYR D +SVTK A+RE+R ++++ E+L+SEKLK +
Sbjct: 367 ENR--GPILLPYQFRMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTY 423
Query: 498 FEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRR 557
FE NP+DL LL+HD L HL VPDYL+ + + K + K SS R
Sbjct: 424 FEDNPRDLQLLRHDLPLHPAVVKPHLGHVPDYLVPPALRGLVRPHKKRK-----KLSSCR 478
Query: 558 QGPRRKFRKSDPLKSF 573
+ RK + +PL+SF
Sbjct: 479 KA--RKAKSQNPLRSF 492
>gi|320583899|gb|EFW98112.1| ATP-dependent RNA helicase DBP9 (DEAD-box protein 9) [Ogataea
parapolymorpha DL-1]
Length = 542
Score = 334 bits (856), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 204/526 (38%), Positives = 302/526 (57%), Gaps = 52/526 (9%)
Query: 22 AEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILE-GKDVVARAKTGSGKTFAY 80
+E SFE LD RL+ A+NK G + PTLIQ +I L LE KD++ARA TGSGKT AY
Sbjct: 10 VDEGVSFESFDLDARLIQAINKLGFEHPTLIQTQTIKLSLEERKDIIARASTGSGKTAAY 69
Query: 81 LLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSS 140
+P++ + S + ALVLVPT+EL +QV + L C +V+ L +
Sbjct: 70 CIPIVQSILASGSDSEGVK--ALVLVPTKELSKQVAEFLGQLTVFCGRSA--RVLNLNDN 125
Query: 141 MPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYE 199
+ L +I ++TP + L ++KS +L+ LV+DE DL++SYGY+
Sbjct: 126 VSEQVQLQLLNEGREIYVSTPAKLISVLE----KNKSIQLTNLRFLVIDEVDLMVSYGYK 181
Query: 200 DDLKALSAVIPR--GCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNV 257
DDL L + Q LMSAT + +V +LK + P +L L +V K +++
Sbjct: 182 DDLDKLGEYLSTKTNTQTFLMSATLNEEVTELKTKFCNKPAVLKLEDVDSDKKKLV---- 237
Query: 258 QQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAEL 317
Q++I +E DK L I +LKL L++ K L+F N +D ++LKLFL+ FGIKS +LN+EL
Sbjct: 238 -QYYIKTNELDKFLLIYVILKLGLIKGKILLFVNELDRGYKLKLFLQNFGIKSCLLNSEL 296
Query: 318 PQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVV 377
P NSRLHI+EEFN +++ LIATD+ ++ QS+ +FGV
Sbjct: 297 PVNSRLHIVEEFNKNVYNLLIATDEAN--QEGQSN--------------------DFGVS 334
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLV------------SPDEM 425
RG+DFKNV V+NF++P ++ YVHR+GRT R +G ++S V S
Sbjct: 335 RGVDFKNVACVLNFDLPVSSKTYVHRVGRTARGGKSGMALSFVVAAKEWGKHKASSLASA 394
Query: 426 KIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLR 485
K E++ + + +++ + P+ VE+ RYR ED +SVT+ AVR++R ++++
Sbjct: 395 KKDEKVLARIERSQSKLGYELKPYQ-FNMKQVEAFRYRMEDSFRSVTRAAVRDARLREIK 453
Query: 486 NEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 531
E++ SEKLK HFE NP+DL L+HDKDL+ +HL+ VP YLL
Sbjct: 454 QELMASEKLKRHFEENPQDLVTLRHDKDLASVRADAHLKRVPTYLL 499
>gi|328860912|gb|EGG10017.1| hypothetical protein MELLADRAFT_34088 [Melampsora larici-populina
98AG31]
Length = 640
Score = 333 bits (855), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 199/542 (36%), Positives = 308/542 (56%), Gaps = 70/542 (12%)
Query: 49 PTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPA------- 101
PT +Q+ IPL L GKD++A ++TGSGKT AY +P++ + + + K +L P
Sbjct: 44 PTQVQRDFIPLALSGKDILAGSRTGSGKTLAYAIPIIQNILDLRA-KKRLNPIEIINFNL 102
Query: 102 -ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIAT 160
A++LVPTREL +QV +L + ++V+ L++ + + PD++++T
Sbjct: 103 NAIILVPTRELSEQVSVTFRSLCNGMGSEAIIEVLNLSAPDASGSKKRNSGSSPDVLVST 162
Query: 161 PGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE-DDLKAL----------SAVI 209
P + L +G L + S LVLDEADL+LSYG+ DD+K++ +
Sbjct: 163 PAKLLSKLRSGSLNLSNLS----FLVLDEADLILSYGHSSDDIKSILSGSGNADGITWRF 218
Query: 210 PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS-ERD 268
P Q LMSAT + +V +LK L+L +P IL + E E KN+ QF I + E+D
Sbjct: 219 PNFYQSFLMSATMTEEVAQLKNLVLRDPEILMVKET-----ESELKNLTQFSIGITNEQD 273
Query: 269 KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 328
K L + + +L L++ K LIF N+ D +++LKLFLEKFGI+S +LN+ELP NSR H ++E
Sbjct: 274 KFLLVYVIFRLRLIKGKGLIFVNSTDKSYQLKLFLEKFGIRSGVLNSELPFNSRYHAVQE 333
Query: 329 FNAGLFDYLIATD---DTQTKEKDQSDEGGHVDSRKSKKHPKAKLDS------------- 372
FN G+F+YLIATD D++ E +Q+D+ S + P A++++
Sbjct: 334 FNRGVFNYLIATDESGDSRDDEDEQADQSVEEASSLQESKPDAEVETTVSEKSSKKRKRK 393
Query: 373 ------------EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLV 420
++GV RG+DF +V VINF++P +A Y HRIGRT RA TG S+S V
Sbjct: 394 ESAKDRFADRSQDYGVSRGVDFVDVGCVINFDIPPSARCYTHRIGRTARAGRTGISLSFV 453
Query: 421 SPD---------EMKIFEEIKSF--VGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAK 469
+ ++ +++ ++ + + + + + I + VE RYR +D +
Sbjct: 454 RSTASTSTQKNVDQQVTKDLNTWQRIEEQQRQRGSEIREYK-FDMTQVEGFRYRMQDGLR 512
Query: 470 SVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDY 529
SVTK A+RE+R ++++NE++NSEKLK+HFE NP DL LKHDK L H++ VP Y
Sbjct: 513 SVTKAAIREARIKEIKNEVMNSEKLKSHFEANPNDLAFLKHDKPLHPTRIQPHMKHVPSY 572
Query: 530 LL 531
L+
Sbjct: 573 LV 574
>gi|28273387|gb|AAO38473.1| putative RNA helicase, 5'-partial [Oryza sativa Japonica Group]
Length = 299
Score = 333 bits (853), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 180/290 (62%), Positives = 228/290 (78%), Gaps = 8/290 (2%)
Query: 306 FGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKH 365
FGI+S++LNAELPQNSRLHI++ FNA LFDYLIATDD ++KE+ Q+++G DSR S+K
Sbjct: 1 FGIRSSVLNAELPQNSRLHIIQAFNARLFDYLIATDDNKSKEERQANKGNKKDSRVSRKQ 60
Query: 366 PKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM 425
+ LD+EFGVVRGIDFKNV TV+N++MP + AGYVHR+GRTGRA TGAS+SLVSP E
Sbjct: 61 LQQTLDAEFGVVRGIDFKNVFTVVNYDMPPDPAGYVHRVGRTGRANKTGASISLVSPKEN 120
Query: 426 KIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLR 485
IFE+I++ + D EN D++ I+PFPLL +NAVESLRYRA+DVA+SVT ++E+R QD++
Sbjct: 121 GIFEDIENMLKDVENRDTSCISPFPLLTKNAVESLRYRAQDVARSVTTRDIKEARRQDIK 180
Query: 486 NEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLA 545
NEILNSEKLKAHF+ NP+DLDLLKHDK LS K +HLRDVP+YL+D T+EA +VKL+
Sbjct: 181 NEILNSEKLKAHFDENPRDLDLLKHDKLLSNKEIPAHLRDVPEYLIDPTTKEASNVVKLS 240
Query: 546 RAAMGNKNSSRRQGPRRKF-----RKSDPLKSFSAEPTKRAGKGRMKREG 590
RAAM RR+ R F R SDPLK+FSAE R +GR +R+G
Sbjct: 241 RAAMDIDKPRRRK--RMGFKGGSGRSSDPLKTFSAEGKSRR-RGRKERDG 287
>gi|324508234|gb|ADY43479.1| ATP-dependent RNA helicase DDX56 [Ascaris suum]
Length = 665
Score = 333 bits (853), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 210/581 (36%), Positives = 330/581 (56%), Gaps = 48/581 (8%)
Query: 20 AEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFA 79
A E +F+E LD RL+ A+ + G +KPT IQQ IPL LEGK++ ARA+TGSGKT A
Sbjct: 108 AGVNEFTNFDEFNLDERLLKAIGELGWEKPTQIQQTMIPLALEGKNITARARTGSGKTAA 167
Query: 80 YLLPLLHRLFNESSPKSKL---APAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQ 136
++LP++ +L + +S S P AL + P+REL Q++ L++L L V
Sbjct: 168 FMLPIIQKLLHLTSMSSSCTSAGPYALFIAPSRELAAQIFK---LLLQLTAAFPFLLSVN 224
Query: 137 LTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSY 196
+ +++ A L PD++++TP L + + L+ +VLDEADLLLSY
Sbjct: 225 FSDFDFNAEI-AWLKEHPDMIVSTPSR----LVDACKRKPQLCEQLRYVVLDEADLLLSY 279
Query: 197 GYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN 256
GYE+D++ L +P+ Q + SAT + D+ LKK+ L+ + + G + D
Sbjct: 280 GYENDMRQLKQFLPQNYQTIFTSATLTEDISPLKKMFLNGALVTLRLKEGQLPDS---DQ 336
Query: 257 VQQFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNA 315
+ Q+ I+C +E ++ +L ++KL+L+ K++IF + D ++L LFL+ F I+S ILNA
Sbjct: 337 LAQYLITCRNEEERFAVLLAMMKLKLLVGKSIIFVSNPDRCYQLGLFLQAFQIRSCILNA 396
Query: 316 ELPQNSRLHILEEFNAGLFDYLIATD--------DTQTKEKDQSDEGGHVDSRKSKKHPK 367
++P NSR H+++EFN G + Y+IA+D DTQ + Q+DE R+ KK +
Sbjct: 397 QMPANSRCHVVDEFNEGRYSYIIASDVSGVLAERDTQEGQWPQNDEYSLGIIREKKK--R 454
Query: 368 AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 427
+ D E GV RGIDF +V V+NF+ P + GYVHR+GRT R +N G ++S +P+E
Sbjct: 455 KRFDKESGVARGIDFTHVSNVVNFDFPTSFDGYVHRVGRTARGWNKGTAISFATPNEASF 514
Query: 428 FEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNE 487
E ++ + +E +I P+ + + +ES RA + + T+ +RE+R ++R E
Sbjct: 515 VELVRHKM---VSEMGRVIMPYAIHIKE-LESFVLRAREALAACTRSVIREARLAEIRGE 570
Query: 488 ILNSEKLKAHFEVNPKDLDLLKHDK---DLSKKPPASHLRDVPDYLLDAKTQEACKMVKL 544
L S+KL +F NP++ LL+HDK LS PA + DVPDY++ A + + +
Sbjct: 571 ALRSKKLDGYFAENPRERTLLEHDKKLYTLSLHSPA--IADVPDYMVPA----SLRGMNF 624
Query: 545 ARAA--MGNKNSSRRQGPRR--------KFRKSDPLKSFSA 575
A +G K S+RQ +R + R DPL+SFSA
Sbjct: 625 TSNAQPIGRKRRSQRQNHKRITAAQSKHRRRMEDPLRSFSA 665
>gi|426227859|ref|XP_004008032.1| PREDICTED: probable ATP-dependent RNA helicase DDX56 isoform 2
[Ovis aries]
Length = 512
Score = 332 bits (851), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 212/560 (37%), Positives = 309/560 (55%), Gaps = 70/560 (12%)
Query: 21 EAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAY 80
E E FE +GLD RL+ A+ G +PTLIQ+ +IPL LEGKD++ARA+TGSGKT AY
Sbjct: 2 EDPESLGFEHMGLDHRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAY 61
Query: 81 LLPLLHRLFNE--SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLT 138
+P+L L + + P + A ALVLVPT+EL +Q S + L C + +V ++
Sbjct: 62 AIPMLQLLLHRKATGPVVEQAVRALVLVPTKELARQAQSMIQQLAAYCARDI--RVANVS 119
Query: 139 SSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGY 198
++ + RA L PD+V+ TP + L L+ DS+++LV+DEADLL S+G+
Sbjct: 120 AAEDLASQRAVLMEKPDVVVGTPSRILNHLQQDNLK---LRDSMELLVVDEADLLFSFGF 176
Query: 199 EDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ 258
E++LK+L +PR Q LMSAT + DV LK+L+LHNP L L E P +Q
Sbjct: 177 EEELKSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE----SQLPGPDQLQ 232
Query: 259 QFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAEL 317
QF + C +E DK L + LLKL L++ K+L+F NT++ ++RL+LFLE+F I + +LN EL
Sbjct: 233 QFQVVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPACVLNGEL 292
Query: 318 PQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVV 377
P SR D E GV
Sbjct: 293 PLRSRAS----------------------------------------------DPEAGVA 306
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RGIDF +V V+NF++P Y+HR GRT RA N G ++ V P E +I+ +
Sbjct: 307 RGIDFHHVCAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSQLGKIEELLSG 366
Query: 438 DENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAH 497
D + ++ P+ + +E RYR D +SVTK A+RE+R ++++ E+L+SEKLK +
Sbjct: 367 DSG--APVLLPYQFHMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTY 423
Query: 498 FEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRR 557
FE NP+DL LL+HD L HL +VPDYL+ T +V A + + + R+
Sbjct: 424 FEDNPRDLQLLRHDLPLHPAVVKPHLGNVPDYLVQLLT-----LVPPALRGLVHPHKKRK 478
Query: 558 QGP----RRKFRKSDPLKSF 573
+ P +K + +PL+SF
Sbjct: 479 KPPTSKKAKKAKTQNPLRSF 498
>gi|330934123|ref|XP_003304424.1| hypothetical protein PTT_17014 [Pyrenophora teres f. teres 0-1]
gi|311318967|gb|EFQ87486.1| hypothetical protein PTT_17014 [Pyrenophora teres f. teres 0-1]
Length = 605
Score = 332 bits (851), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 219/593 (36%), Positives = 333/593 (56%), Gaps = 55/593 (9%)
Query: 13 KQAEEEEAEAEE-EKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAK 71
K+A +E A+ + SF EL L+ RL+ A+ PT IQ +IPL LEG+D++AR+
Sbjct: 47 KKASKEAAKNQPVAASFAELQLEPRLLRAIRDLKWASPTDIQSKAIPLALEGRDILARSG 106
Query: 72 TGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQ 131
TG+GKT AYLLP+LH+ +L+L PTRELC Q+ + +L + C +++
Sbjct: 107 TGTGKTAAYLLPILHKTLQRKQ-------TSLILAPTRELCLQIATVAKSLSQHCGQEIR 159
Query: 132 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 191
++ + S + +AALA P++V+ATP +++ L F ILV+DE D
Sbjct: 160 VRNIAGKESEVVT--KAALADKPEVVVATPARAWANINSSNLTISDFG----ILVVDEGD 213
Query: 192 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 251
L+ YG+ +D++ ++ +P G Q +++SAT S+DV+ L L+ NP IL L ++ KD
Sbjct: 214 LINGYGFSEDMENIAREMPAGVQKIVLSATLSTDVESLGSLLCTNPVILKLADLD--KDS 271
Query: 252 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 311
V+Q+ + +E DK L I + KL+L++ K ++F +D ++R+KLFLE+FGIKS
Sbjct: 272 ---NKVKQYVLKVAEDDKFLLIYAMFKLQLIKGKTIVFVGDVDRSYRVKLFLEQFGIKSC 328
Query: 312 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLD 371
+LN+ELP SR HI+E FN ++ LIA+D+T D G DS K KAK +
Sbjct: 329 VLNSELPLASRTHIVECFNRNEYNILIASDET--------DVVGVQDSEARPKKKKAKKE 380
Query: 372 S-EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE 430
S + GV RGIDF NV V+NF+ P Y HRIGRT RA +G ++S + P + +
Sbjct: 381 SNDSGVSRGIDFLNVSCVLNFDFPGTYKSYFHRIGRTARAGKSGTAISFIIPKDQYRKHK 440
Query: 431 IKSFVGDDENEDSNIIAPFPLLAQNA------------VESLRYRAEDVAKSVTKIAVRE 478
+F G + +E+ ++ Q +E RYR D +SVT+IA+RE
Sbjct: 441 PTTFAGCEHDEE--VLEKVEKHQQEGQKLENYNFDMKRLEPFRYRFGDALRSVTRIAIRE 498
Query: 479 SRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPAS---HLRDVPDYLL-DAK 534
+R +++ E+ S+KL +FE NP+ L L+HD+ L+ PA HL+ VPDYLL K
Sbjct: 499 ARIKEIHIELAKSQKLSRYFEENPEALAHLRHDQTLNH--PARIQPHLKYVPDYLLPGGK 556
Query: 535 TQEACKMVKLARAAMGNKNSSRRQGPR--RKFRKSDPLKSFSAEPTKRAGKGR 585
E V L + + +G + R+ K DPLK+F+A GKG+
Sbjct: 557 KPEDVGFVGLNIPKPNRRTYVKGRGRKVVRRNGKVDPLKTFNAR-----GKGK 604
>gi|380692328|ref|NP_001244118.1| probable ATP-dependent RNA helicase DDX56 isoform 2 [Homo sapiens]
gi|426356103|ref|XP_004045431.1| PREDICTED: probable ATP-dependent RNA helicase DDX56 isoform 2
[Gorilla gorilla gorilla]
Length = 507
Score = 331 bits (849), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 217/558 (38%), Positives = 303/558 (54%), Gaps = 71/558 (12%)
Query: 21 EAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAY 80
E E FE +GLD RL+ A+ G +PTLIQ+ +IPL LEGKD++ARA+TGSGKT AY
Sbjct: 2 EDSEALGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAY 61
Query: 81 LLPLLHRLFNE--SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLT 138
+P+L L + + P + A LVLVPT+EL +Q S + L C V +V ++
Sbjct: 62 AIPMLQLLLHRKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCARDV--RVANVS 119
Query: 139 SSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGY 198
++ + RA L PD+V+ TP + LS S DSL++LV+DEADLL S+G+
Sbjct: 120 AAEDSVSQRAVLMEKPDVVVGTPS---RILSHLQQDSLKLRDSLELLVVDEADLLFSFGF 176
Query: 199 EDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ 258
E++LK+L +PR Q LMSAT + DV LK+LILHNP L L E P +Q
Sbjct: 177 EEELKSLLCHLPRIYQAFLMSATFNEDVQALKELILHNPVTLKLQE----SQLPGPDQLQ 232
Query: 259 QFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAEL 317
QF + C +E DK L + LLKL L++ K+L+F NT++ ++RL+LFLE+F I + +LN EL
Sbjct: 233 QFQVVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGEL 292
Query: 318 PQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVV 377
P SR D E GV
Sbjct: 293 PLRSRAS----------------------------------------------DPEAGVA 306
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RGIDF +V V+NF++P Y+HR GRT RA N G ++ V P E +I+ +
Sbjct: 307 RGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQFHLGKIEELLSG 366
Query: 438 DENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAH 497
+ I+ P+ + +E RYR D +SVTK A+RE+R ++++ E+L+SEKLK +
Sbjct: 367 ENR--GPILLPYQFRMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTY 423
Query: 498 FEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNK--NSS 555
FE NP+DL LL+HD L HL VPDYL+ + L R K +SS
Sbjct: 424 FEDNPRDLQLLRHDLPLHPAVVKPHLGHVPDYLVPPALR------GLVRPHKKRKKLSSS 477
Query: 556 RRQGPRRKFRKSDPLKSF 573
R+ R K +PL+SF
Sbjct: 478 CRKAKRAK--SQNPLRSF 493
>gi|116202485|ref|XP_001227054.1| hypothetical protein CHGG_09127 [Chaetomium globosum CBS 148.51]
gi|88177645|gb|EAQ85113.1| hypothetical protein CHGG_09127 [Chaetomium globosum CBS 148.51]
Length = 1029
Score = 331 bits (848), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 221/599 (36%), Positives = 328/599 (54%), Gaps = 80/599 (13%)
Query: 11 EVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARA 70
E K A+ E+ E E SF ELGLD RLV A+ K+ +KPTL+Q+ +IPL L+G+DV+ +A
Sbjct: 291 EPKPAKAEKPSTEAEPSFAELGLDPRLVQAVAKQSFEKPTLVQRKAIPLALQGQDVLCKA 350
Query: 71 KTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQV 130
KTGSGKT AY+LP+L + S A L+LVPTREL QV+ + C +
Sbjct: 351 KTGSGKTAAYVLPVLSAILKRKSTDPAPFTAGLILVPTRELADQVFKAIEQFSAFCAKDI 410
Query: 131 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEA 190
+LT ++ + R+ LA PDIV++TP +++ L S S L+ LVLDEA
Sbjct: 411 H--AAKLTENVSDAVQRSLLANVPDIVVSTPARAWHSVNSSAL---SLS-QLQYLVLDEA 464
Query: 191 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD 250
DL+LSYGY++D++ ++ +P+G Q +MSAT S+++D LK + NP +L L E +D
Sbjct: 465 DLVLSYGYDEDMENIARALPKGVQTTMMSATLSAELDTLKGIFCRNPTVLDLQEEFGAED 524
Query: 251 EVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 310
E + QF++ C+E DK L + KL+L++ LIF ID ++RL KF I+S
Sbjct: 525 E----KLTQFYVKCAEDDKWLVSYLVFKLQLIKGPCLIFVADIDRSYRL-----KFSIRS 575
Query: 311 AILNAELPQNSRLHILEEFNAGLFDYLIATDD---------------TQTKEKDQSDEGG 355
+LN+ELP N+R+ I+EEFN G++D +IA+D+ + K+K ++E G
Sbjct: 576 CVLNSELPINTRIKIIEEFNRGIYDIIIASDEKSEVFGDAAADAEAEKEPKKKSNNEEDG 635
Query: 356 HVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGA 415
+ KK + K D E+GV R GRT RA G
Sbjct: 636 A--EQPKKKRRQQKKDEEYGVSR--------------------------GRTARAGRAGI 667
Query: 416 SVSLVSPDEM------------KIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYR 463
++S V P E + E++ + V + + + P+ ++ +E+ RYR
Sbjct: 668 ALSFVIPKEFHGKHRPTAIKSTEKDEKVLAKVTRQQEKLGRKLEPYN-FNKSQMEAFRYR 726
Query: 464 AEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKP-PASH 522
D ++VTK+A+RE+R ++LR E+L SE LK +FE NP +L L+HD +L + H
Sbjct: 727 MNDALRAVTKVAIREARTKELRQELLRSETLKRYFEENPTELSHLRHDGELGRTTRQQPH 786
Query: 523 LRDVPDYLL--DAKTQEACKMVKLAR-AAMGNKNSSRRQG-PR-RKFR---KSDPLKSF 573
L+ VPDYLL D K A + V G K+ R+G P+ R FR K DPLK+F
Sbjct: 787 LKHVPDYLLPKDGKKALASEHVGFVPFKKEGGKDRKHRKGKPKGRSFRVGGKKDPLKTF 845
>gi|326437945|gb|EGD83515.1| hypothetical protein PTSG_04124 [Salpingoeca sp. ATCC 50818]
Length = 632
Score = 330 bits (847), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 207/542 (38%), Positives = 306/542 (56%), Gaps = 56/542 (10%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
S+ LGLD R A + G +PT IQ+A I LEG+D++ARA+TGSGKT AY LPL++
Sbjct: 14 SWGSLGLDPRTAKASQRMGWSRPTAIQRAVITCALEGRDILARARTGSGKTGAYALPLIN 73
Query: 87 RLFNESSPKSKLAPA-------ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTS 139
+ ++ A ALVLVPT+EL Q + + C+ QV + V ++
Sbjct: 74 AVLKAKEERATTASGGEDHGILALVLVPTKELVDQTADTLKQIAAHCEQQVSVVSVVASA 133
Query: 140 SMPAS----DLRAALAGPPDIVIATPG-CMPKCLSTGVLQSKSFSDSLKILVLDEADLLL 194
S S D + L PDIV+ATP + K L V+ +D K+LVLDEADL+L
Sbjct: 134 SSSRSRKKMDDASLLTDLPDIVVATPTTVLSKILEKRVV----VTDDFKMLVLDEADLIL 189
Query: 195 SYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKK-LILHNPYILTLPEVGDVKDEVI 253
+YG++D ++ LS V+P Q +L+SAT S D+ LK ++L +P I+ L E D+ D+
Sbjct: 190 TYGHDDAVRQLSTVLPSVKQTILLSATMSEDIQALKSHIVLRSPAIIKLEE-SDLPDD-- 246
Query: 254 PKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAIL 313
+ ++Q + C++ DK L LL L+L+ K L+F NT++ ++LKLFLEKF I+S L
Sbjct: 247 -EQLKQHALVCNDEDKYLNFYALLALKLLSGKTLVFVNTVNECYKLKLFLEKFSIRSCAL 305
Query: 314 NAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSE 373
N+ LP NSR HI+ +FN G++D +IA+D+T ++G + R +K D+E
Sbjct: 306 NSRLPANSRRHIVTQFNKGIYDIIIASDET------DGNQGKKIKPRNAK---FVASDNE 356
Query: 374 FGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKS 433
+GVVRG+DFK+V V+NF+ P YVHR+GRT R +G ++S V P + ++
Sbjct: 357 YGVVRGVDFKDVTNVVNFDFPPTVERYVHRVGRTARGRQSGIALSFVDPRQRSALHRVEK 416
Query: 434 FV--------------------GDDENE----DSNIIAPFPLLAQNAVESLRYRAEDVAK 469
F+ G E E D II P+ + + V+ L+YR +D
Sbjct: 417 FLQEQAKAQDDDDEDVDGNDEGGKAETEIDAQDGEIIKPYTIKV-DVVKPLKYRVDDAIA 475
Query: 470 SVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSK-KPPASHLRDVPD 528
VTK + + +D+ ++LNSE LKAHF NP+DL +L+HD L K HL+D+P
Sbjct: 476 HVTKRDIDLAIRRDIELQLLNSETLKAHFVENPRDLQVLRHDTVLHDVKDIKPHLKDLPF 535
Query: 529 YL 530
YL
Sbjct: 536 YL 537
>gi|189192450|ref|XP_001932564.1| ATP-dependent RNA helicase DBP9 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187974170|gb|EDU41669.1| ATP-dependent RNA helicase DBP9 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 605
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 215/578 (37%), Positives = 326/578 (56%), Gaps = 54/578 (9%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF EL L+ RL+ A+ PT IQ +IPL LEG+D++AR+ TG+GKT AYLLP+LH
Sbjct: 62 SFAELHLEPRLLRAIRDLKWASPTDIQSKAIPLALEGRDILARSGTGTGKTAAYLLPILH 121
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
+ +L+L PTRELC Q+ + +L + C +++++ + S +
Sbjct: 122 KTLQRKQ-------TSLILAPTRELCLQIATVAKSLSQHCGQEIRVRNIAGKESEVVT-- 172
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
+AALA P++V+ATP +++ L + SD L LV+DE DL+ YG+ +D++ ++
Sbjct: 173 KAALADKPEVVVATPARAWANINSSNL---AISD-LGTLVVDEGDLINGYGFSEDMENIA 228
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
+P G Q +++SAT S+DV+ L L+ NP +L L ++ KD V+Q+ + E
Sbjct: 229 REMPAGVQKIVLSATLSTDVESLGSLLCTNPVVLKLADLD--KDS---NKVKQYVLKVGE 283
Query: 267 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
+K L I + KL+L++ K ++F +D ++R+KLFLE+FGIKS +LN+ELP SR HI+
Sbjct: 284 DEKFLLIYAMFKLQLIKGKTIVFVGDVDRSYRVKLFLEQFGIKSCVLNSELPLASRTHIV 343
Query: 327 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDS-EFGVVRGIDFKNV 385
E FN ++ LIA+D+T D G DS K KAK DS + GV RGIDF NV
Sbjct: 344 ECFNRNEYNILIASDET--------DVVGVQDSETRPKKKKAKKDSNDSGVSRGIDFLNV 395
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNI 445
V+NF+ P Y HRIGRT RA +G ++S + P + + +F G + +E+ +
Sbjct: 396 SCVLNFDFPGTYKSYFHRIGRTARAGKSGTAISFIIPKDQYRKHKPTTFAGCEHDEE--V 453
Query: 446 IAPFPLLAQNA------------VESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEK 493
+ Q +E RYR D +SVT+IA+RE+R +++ E+ S+K
Sbjct: 454 LKKVEKHQQEGQKLENYNFDMKRLEPFRYRFSDALRSVTRIAIREARIKEIHMELAKSQK 513
Query: 494 LKAHFEVNPKDLDLLKHDKDLSKKPPAS---HLRDVPDYLL-DAKTQEACKMVKLARAAM 549
L +FE NP+ L L+HD+ L+ PA HL+ VPDYLL K E V L
Sbjct: 514 LSRYFEENPEALAHLRHDQTLNH--PARIQPHLKHVPDYLLPGGKKPEDVGFVGLNIPKP 571
Query: 550 GNKNSSRRQGPR--RKFRKSDPLKSFSAEPTKRAGKGR 585
+ + +G + R+ K DPLK+F+A GKG+
Sbjct: 572 NRRTYVKGRGRKVVRRNGKVDPLKTFNAR-----GKGK 604
>gi|410058883|ref|XP_003951047.1| PREDICTED: probable ATP-dependent RNA helicase DDX56 [Pan
troglodytes]
Length = 507
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 217/558 (38%), Positives = 303/558 (54%), Gaps = 71/558 (12%)
Query: 21 EAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAY 80
E E FE +GLD RL+ A+ G +PTLIQ+ +IPL LEGKD++ARA+TGSGKT AY
Sbjct: 2 EDSEALGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAY 61
Query: 81 LLPLLHRLFNE--SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLT 138
+P+L L + + P + A LVLVPT+EL +Q S + L C V +V ++
Sbjct: 62 AIPMLQLLLHRKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCARDV--RVANVS 119
Query: 139 SSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGY 198
++ + RA L PD+V+ TP + LS S DSL++LV+DEADLL S+G+
Sbjct: 120 AAEDSVSQRAVLMEKPDVVVGTPS---RILSHLQQDSLKLRDSLELLVVDEADLLFSFGF 176
Query: 199 EDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ 258
E++LK+L +PR Q LMSAT + DV LK+LILHNP L L E P +Q
Sbjct: 177 EEELKSLLCHLPRIYQAFLMSATFNEDVQALKELILHNPVTLKLQE----SQLPGPDQLQ 232
Query: 259 QFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAEL 317
QF + C +E DK L + LLKL L++ K+L+F NT++ ++RL+LFLE+F I + +LN EL
Sbjct: 233 QFQVICETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGEL 292
Query: 318 PQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVV 377
P SR D E GV
Sbjct: 293 PLRSRAS----------------------------------------------DLEAGVA 306
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RGIDF +V V+NF++P Y+HR GRT RA N G ++ V P E +I+ +
Sbjct: 307 RGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQFHLGKIEELLSG 366
Query: 438 DENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAH 497
+ I+ P+ + +E RYR D +SVTK A+RE+R ++++ E+L+SEKLK +
Sbjct: 367 ENR--GPILLPYQFRMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTY 423
Query: 498 FEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNK--NSS 555
FE NP+DL LL+HD L HL VPDYL+ + L R K +SS
Sbjct: 424 FEDNPRDLQLLRHDLPLHPAVVKPHLGHVPDYLVPPALR------GLVRPHKKRKKLSSS 477
Query: 556 RRQGPRRKFRKSDPLKSF 573
R+ R K +PL+SF
Sbjct: 478 CRKAKRAK--SQNPLRSF 493
>gi|396501090|ref|XP_003845894.1| similar to ATP-dependent RNA helicase dbp9 [Leptosphaeria maculans
JN3]
gi|312222475|emb|CBY02415.1| similar to ATP-dependent RNA helicase dbp9 [Leptosphaeria maculans
JN3]
Length = 634
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 215/567 (37%), Positives = 321/567 (56%), Gaps = 42/567 (7%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF +L L+ RL+ + + PT +Q +IPL L+G+D++AR+ TG+GKT AYLLP+LH
Sbjct: 86 SFADLDLEPRLLRGIRDQKWSIPTAVQSQAIPLALQGRDILARSGTGTGKTGAYLLPILH 145
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
S L+LVPT+EL Q+ AL C ++++ + S +
Sbjct: 146 NTLRRKGKSS------LILVPTKELALQITKVAKALSAYCGQDIRIQNIAGKESELVT-- 197
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
+A LA PDIVIATP ++ G L + LV+DE DL++ YG++DDL +
Sbjct: 198 KAKLADRPDIVIATPARAWININNGALSVTELAH----LVVDEGDLVMGYGFKDDLDQIE 253
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
IP G Q LMSAT +++V L L+ +P +L L ++ + + V+Q+ I C+E
Sbjct: 254 ENIPTGVQKFLMSATLNTEVKSLGTLLCVDPVVLKLDDL-----DKNAQKVKQYVIKCAE 308
Query: 267 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
+K L I + KL+L++ K+++F D ++R+KLFLE+FGIKS +LN+ELP SRLHI+
Sbjct: 309 EEKFLLIYAMFKLQLIKGKSIVFVGDTDRSYRVKLFLEQFGIKSCVLNSELPLASRLHIV 368
Query: 327 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 386
EEFN +++ LIA+D+T+ Q + G +KSKK ++K DS GV RGIDF NV
Sbjct: 369 EEFNKNIYNILIASDETEI--LGQQEIGESRPKKKSKKENESKTDS--GVSRGIDFLNVS 424
Query: 387 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG--DDE----- 439
V+NF+ P Y HRIGRT RA +G ++S + P + + +F G +DE
Sbjct: 425 CVLNFDFPGTYKSYFHRIGRTARAGKSGTAISFIIPKDKYRKHKSTTFSGCENDEEILKK 484
Query: 440 ----NEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLK 495
E+ + + + +E RYR D +SVT+IA+RE+R +++R E+ S KL
Sbjct: 485 VEKHQEEGQKLENYNFDMKR-LEPFRYRFGDALRSVTRIAIREARIKEIRLELSKSAKLS 543
Query: 496 AHFEVNPKDLDLLKHDKDLSKKPPAS---HLRDVPDYLL-DAKTQEACKMVKLARAAMGN 551
+FE NP+ L L+HD+ L+ PA HL+ VPDYLL K E V L +
Sbjct: 544 RYFEENPEALAHLRHDQTLNH--PARIQPHLKHVPDYLLPGGKKPEDVGFVGLNLPRLDR 601
Query: 552 KNSSRRQGP---RRKFRKSDPLKSFSA 575
K + +G R + K DPLK+F+A
Sbjct: 602 KKFIKGKGRKVVRGRNGKVDPLKTFNA 628
>gi|302502050|ref|XP_003013016.1| hypothetical protein ARB_00560 [Arthroderma benhamiae CBS 112371]
gi|291176578|gb|EFE32376.1| hypothetical protein ARB_00560 [Arthroderma benhamiae CBS 112371]
Length = 565
Score = 330 bits (845), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 210/602 (34%), Positives = 308/602 (51%), Gaps = 113/602 (18%)
Query: 26 KSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLL 85
++FE+ GLD RL+ AL + KPTL+Q +IPL L+GKD+ L
Sbjct: 24 RNFEDFGLDPRLLQALTSQKFSKPTLVQAEAIPLALDGKDI------------------L 65
Query: 86 HRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASD 145
+ ES E C + ++ LT + +
Sbjct: 66 ENIAEES-----------------EFCSK----------------DIRSGNLTQKVSDAV 92
Query: 146 LRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL 205
RA LA PDIVI+TP ++ L D++ +V+DEADL+LSYGYE D++ L
Sbjct: 93 QRALLADLPDIVISTPARAIVNVNNSALAL----DNISQVVIDEADLVLSYGYEQDMQNL 148
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
+ IPRG Q LMSAT +S+VD LK L +P IL L E D + QF + C+
Sbjct: 149 AKAIPRGVQTFLMSATLTSEVDTLKGLFCRSPAILKLEEAEDEG-----AGISQFAVKCA 203
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
E DK L + KL+LV+ K +IF +D +RLKLFLE+FGIKS ILN+ELP NSR+H
Sbjct: 204 EDDKFLLTYVIFKLQLVKGKCIIFVGDVDRCYRLKLFLEQFGIKSCILNSELPANSRIHA 263
Query: 326 LEEFNAGLFDYLIATDDTQT----------KEKDQSDEGGHVDSRKSKKHPK-------- 367
+EEFN G++D +IA DD + E+++ + K P+
Sbjct: 264 VEEFNKGVYDIIIAADDQEVIGKIESNKKPSEREEPITDAATEENKDLSEPEEVEEKAAP 323
Query: 368 ---------AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVS 418
+ + ++G+ RGIDF++V V+NF++P A Y HRIGRTGRA TG ++S
Sbjct: 324 SNKNKKRKKSGKEKDYGISRGIDFQDVACVLNFDLPTTAKSYTHRIGRTGRAGKTGMALS 383
Query: 419 LVSPDEM------KIFEEIK---SFVGDDENEDSNI---IAPFPLLAQNAVESLRYRAED 466
V P E+ IF K S + E + + + P+ + +E RYR D
Sbjct: 384 FVVPSELYGKHKPTIFPPAKNDESVLAKIEKRQAKMGREVKPYH-FDKKQIEVFRYRMTD 442
Query: 467 VAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDV 526
++VT+IAV+E+RA+++R E++ SEKLK HFE NP++L L+HD++L S L++V
Sbjct: 443 ALRAVTRIAVQEARAKEIRQELVKSEKLKRHFEENPQELRELRHDQELGSVRVQSQLKNV 502
Query: 527 PDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRK-------------FRKSDPLKSF 573
P+YL+ K + + + + K +R + R+K RK DPLKSF
Sbjct: 503 PEYLMPTKGKSSLTSEDIGVVGLHKKKGNRIRQARQKNKARGRIAKKGGAGRKIDPLKSF 562
Query: 574 SA 575
+
Sbjct: 563 KS 564
>gi|331232346|ref|XP_003328835.1| hypothetical protein PGTG_10136 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309307825|gb|EFP84416.1| hypothetical protein PGTG_10136 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 668
Score = 330 bits (845), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 213/555 (38%), Positives = 297/555 (53%), Gaps = 85/555 (15%)
Query: 49 PTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPK-------SKLAPA 101
PT +Q+ IPL L GKD++AR+ TGSGKT AY +P+L + +
Sbjct: 45 PTQVQKEFIPLALNGKDILARSSTGSGKTLAYAIPILQSILENKFKRRTSTTTALTTLTM 104
Query: 102 ALVLVPTRELCQQVYSEVMALIELCKG---QVQLKVVQLTSSMPASDLR-------AALA 151
A++LVPTREL QV +A+ LCKG + ++++ L SS R + +
Sbjct: 105 AVILVPTRELSAQV---TLAISSLCKGLGNENAIEIINLASSDSKRSKRKHAQVDQSYTS 161
Query: 152 GPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE-DDLKAL----- 205
PPDI+++TP + L T + + L LVLDEADL+LSYG+ DD+KA+
Sbjct: 162 NPPDIIVSTPARLLDRLRT----TPTDMSGLSFLVLDEADLILSYGHSFDDIKAILSGSG 217
Query: 206 -----SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPE-VGDVKDEVIPKNVQQ 259
S P Q LMSAT +S+V +LK L+L NP IL + E + ++ N+ Q
Sbjct: 218 SSGTHSWRFPTFFQSFLMSATMTSEVAELKSLVLRNPEILYVKESINELS------NLTQ 271
Query: 260 FWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELP 318
F I +E+DK L I + +L+L++ K L+F N+ D +++LKLFLEKFGI+S +LN+ELP
Sbjct: 272 FSIKVPNEQDKFLLIYVIFRLKLIKGKGLVFVNSTDKSYQLKLFLEKFGIRSGVLNSELP 331
Query: 319 QNSRLHILEEFNAGLFDYLIATDD-------------------------TQTKEKDQSDE 353
NSR H +EEFN G+FDYLIATD+ TQ +++ +
Sbjct: 332 FNSRYHAVEEFNKGIFDYLIATDESENNLPIEKKASNPTPAPTDPNLIPTQPSVAEETTD 391
Query: 354 GGHVDSRKSKKHPKAKLDS--EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAY 411
+ +K K D ++GV RGIDF NV VINF++P + Y HRIGRT RA
Sbjct: 392 NVVTNPKKRKNRDDKSQDKPIDYGVSRGIDFVNVACVINFDLPLSTQSYTHRIGRTARAG 451
Query: 412 NTGASVSLV------SPDEMKIFEEIKSFVGDDENEDSNIIA------PFPL---LAQNA 456
TG +S V P K + ++ + I A P
Sbjct: 452 RTGIGLSFVLSTARMEPSSNKTSKNLQETCARETEMWKKIEAEQITRGSIPKEYKFDMTQ 511
Query: 457 VESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSK 516
VE RYR ED +SVTK A+RE+R ++++NEILNS KLK+HFE NP DL LKHDK L
Sbjct: 512 VEGFRYRMEDGLRSVTKAAIREARIKEIKNEILNSTKLKSHFEENPNDLMFLKHDKPLHP 571
Query: 517 KPPASHLRDVPDYLL 531
H++ VP YL+
Sbjct: 572 TRIQPHMKHVPSYLI 586
>gi|403278479|ref|XP_003930832.1| PREDICTED: probable ATP-dependent RNA helicase DDX56 isoform 2
[Saimiri boliviensis boliviensis]
Length = 507
Score = 329 bits (844), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 210/553 (37%), Positives = 298/553 (53%), Gaps = 67/553 (12%)
Query: 24 EEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLP 83
E FE +GLD RL+ A+ G +PTLIQ+ +IPL LEGKD++ARA+TGSGKT AY +P
Sbjct: 5 EAVGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIP 64
Query: 84 LLHRLFNE--SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSM 141
+L L + + P + A LVLVPT+EL +Q + L C V +V +++
Sbjct: 65 MLQLLLHRKATGPVVEQAVRGLVLVPTKELARQAQCMIQQLATYCARDV--RVANVSAVE 122
Query: 142 PASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDD 201
++ RA L PD+++ TP + LS S DSL++LV+DEADLL S+G+E++
Sbjct: 123 DSASQRAVLMEKPDVIVGTPS---RILSHLQQDSLKLRDSLELLVMDEADLLFSFGFEEE 179
Query: 202 LKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW 261
LK+L +PR Q LMSAT + DV LK+L+LHNP L L E P +QQF
Sbjct: 180 LKSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE----SQLPGPDQLQQFQ 235
Query: 262 ISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 320
+ C +E DK L + TLLKL L++ K+L+F NT++ ++RL+LFLE+F I + +LN ELP
Sbjct: 236 VVCETEEDKFLLLYTLLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPLR 295
Query: 321 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 380
SR D E GV RGI
Sbjct: 296 SRAS----------------------------------------------DPEAGVARGI 309
Query: 381 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDEN 440
DF +V V+NF++P Y+HR GRT RA N G ++ V P E +I+ + +
Sbjct: 310 DFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGVVLTFVLPTEQSHLGKIEELLSGENR 369
Query: 441 EDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEV 500
I+ P+ + +E RYR D +SVTK A+RE+R ++++ E+L+SEKLK +FE
Sbjct: 370 --GPILLPYQFQMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFED 426
Query: 501 NPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGP 560
NP+DL LL+HD L HL VPDYL+ + L R K S
Sbjct: 427 NPRDLQLLRHDLPLHPAVVKPHLGHVPDYLVPPALR------GLVRPHKKRKKLSSSCRK 480
Query: 561 RRKFRKSDPLKSF 573
++ + +PL SF
Sbjct: 481 AKRVKSQNPLHSF 493
>gi|302653052|ref|XP_003018360.1| hypothetical protein TRV_07630 [Trichophyton verrucosum HKI 0517]
gi|291181997|gb|EFE37715.1| hypothetical protein TRV_07630 [Trichophyton verrucosum HKI 0517]
Length = 565
Score = 328 bits (842), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 217/604 (35%), Positives = 311/604 (51%), Gaps = 117/604 (19%)
Query: 26 KSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLL 85
+ FE+ GLD RL+ AL + KPTL+Q +IPL L GKD+ L
Sbjct: 24 RHFEDFGLDPRLLQALTSQKFSKPTLVQAEAIPLALGGKDI------------------L 65
Query: 86 HRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASD 145
+ ES E C + ++ LT + +
Sbjct: 66 ENIAEES-----------------EFCSK----------------DIRSGNLTQKVSDAV 92
Query: 146 LRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL 205
RA LA PDIVI+TP ++ L D++ +V+DEADL+LSYGYE D++ L
Sbjct: 93 QRALLADLPDIVISTPARAIVNVNNSALAL----DNISQVVIDEADLVLSYGYEQDMQNL 148
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
+ PRG Q LMSAT +S+VD LK L NP IL L E D + QF + C+
Sbjct: 149 AKATPRGVQTFLMSATLTSEVDTLKGLFCRNPAILKLEEAEDEG-----AGINQFAVKCA 203
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
E DK L + KL+LV+ K +IF +D +RLKLFLE+FGIKS ILN+ELP NSR+H
Sbjct: 204 EDDKFLLTYVIFKLQLVKGKCIIFVGDVDRCYRLKLFLEQFGIKSCILNSELPANSRIHA 263
Query: 326 LEEFNAGLFDYLIATDDTQ-------TKEKDQSDE---GGHVDSRKSKKHPK-------- 367
+EEFN G++D +IA DD + K+ +S+E + K P+
Sbjct: 264 VEEFNKGVYDIIIAADDQEVIGKIESNKKPSESEEPITDAATEENKDLSEPEEVEEKAAP 323
Query: 368 ---------AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVS 418
+ + ++G+ RGIDF++V V+NF++P A Y HRIGRTGRA TG ++S
Sbjct: 324 SNKNKKRKKSGKEKDYGISRGIDFQDVACVLNFDLPTTAKSYTHRIGRTGRAGKTGMALS 383
Query: 419 LVSPDEM------KIFEEIK---SFVGDDENEDSNI---IAPFPLLAQNAVESLRYRAED 466
V P E+ IF K S + E + + + P+ + +E RYR D
Sbjct: 384 FVVPSELYGKHKPTIFPPAKNDESVLAKIEKRQAKMGREVKPYH-FDKKQIEVFRYRMTD 442
Query: 467 VAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDV 526
++VT+IAV+E+RA+++R E++ SEKLK HFE NP++L L+HD++L S L++V
Sbjct: 443 ALRAVTRIAVQEARAKEIRQELVKSEKLKRHFEENPQELRELRHDQELGSVRVQSQLKNV 502
Query: 527 PDYLLDAK-----TQEACKMV--------KLARAAMGNKNSSR--RQGPRRKFRKSDPLK 571
P+YL+ K T E + V ++ +A NK R ++G R RK DPLK
Sbjct: 503 PEYLMPTKGKSSLTSEDIRFVGLHKKKGNRIRQARQKNKARGRIAKKGSAR--RKIDPLK 560
Query: 572 SFSA 575
SF +
Sbjct: 561 SFKS 564
>gi|320035635|gb|EFW17576.1| ATP-dependent RNA helicase [Coccidioides posadasii str. Silveira]
Length = 467
Score = 327 bits (838), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 185/418 (44%), Positives = 259/418 (61%), Gaps = 43/418 (10%)
Query: 25 EKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPL 84
EK+FE L LD RL+ AL K+ KPTL+Q +IPL+L GKDV+ARAKTGSGKT AYLLP+
Sbjct: 22 EKTFETLHLDPRLLQALTKQKFTKPTLVQAEAIPLVLSGKDVLARAKTGSGKTAAYLLPI 81
Query: 85 LHRLFNE--SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMP 142
L + + ++P K + +AL+LVPTREL +QV + V++ C + + LT +
Sbjct: 82 LQSILQKKIANPTQK-SISALILVPTRELAEQVQNAVVSFSSFCGKDI--RSANLTQKVS 138
Query: 143 ASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS---DSLKILVLDEADLLLSYGYE 199
+ RA LA PDI+I+TP + ++ + S S + L LV+DEADL+LSYGYE
Sbjct: 139 DAVQRAILADLPDIIISTP-------ARAIINTNSSSLSLNDLTHLVIDEADLVLSYGYE 191
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
D++ L+ IPRG Q LLMSAT +S+VD LK L +P IL L E D + Q
Sbjct: 192 QDMQNLAKAIPRGVQTLLMSATLTSEVDALKGLFCRSPVILKLEEAEDEG-----AGIAQ 246
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
F + C+E +K L + KL+LV+ K +IF ID ++RLKLFLE+FGIKS +LN+ELP
Sbjct: 247 FAVKCAEDEKFLLTYVIFKLQLVKGKCIIFVGDIDRSYRLKLFLEQFGIKSCVLNSELPV 306
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQ---------TKEKDQSD---------EGGHVDSRK 361
NSR+H+++EFN G++D +IA DD + +K +QS+ E G D +
Sbjct: 307 NSRIHVVQEFNKGVYDIIIAADDQEVIGEIPKKGSKTPEQSNGENGDEPEEEKGFSDEDE 366
Query: 362 SKKHPK-----AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTG 414
+ P + + ++G+ RGIDF++V V+NF++P A Y HRIGRTGRA TG
Sbjct: 367 VEPPPSKKRKKSTKEKDYGISRGIDFQDVACVLNFDLPTTAKSYTHRIGRTGRAGKTG 424
>gi|353243874|emb|CCA75359.1| related to DBP9-ATP-dependent RNA helicase of the DEAD-box family
involved in biogenesis of the 60S ribosomal subunit
[Piriformospora indica DSM 11827]
Length = 702
Score = 326 bits (836), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 217/614 (35%), Positives = 327/614 (53%), Gaps = 119/614 (19%)
Query: 26 KSFEELG-LDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPL 84
K+F LD R++ AL + KPTL+Q+ +IP+ LEG+DV+ RA+TGSGKT AY +P+
Sbjct: 16 KTFSAFANLDTRILRALADQSFIKPTLVQEKAIPVALEGRDVLCRARTGSGKTVAYCVPV 75
Query: 85 LHRLFN----ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSS 140
L R+ S+ + K + A++LVPTREL +QV +++ L + C+ + V +TS
Sbjct: 76 LERVLAGRKASSNDEEKQSTRAVILVPTRELSEQVTTQLKKLSKYCEDII---VSNVTSG 132
Query: 141 MPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYE 199
A + PD+V+ TP + + QSK+ S +L+ILV+DEADL+LSYG+
Sbjct: 133 GNAHRNKMLGDDRPDVVVGTPARV-----LALAQSKTLSLHALEILVIDEADLILSYGHS 187
Query: 200 DDL--------------------KALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYI 239
+ K + +P Q +LMSAT ++DV LK L+L +P I
Sbjct: 188 QTMQTLLSSSTRSSDETTNDGTSKQTKSYLPSVYQSVLMSATLTADVTTLKSLVLRDPVI 247
Query: 240 LTLPEVGDVKDEVIPKNVQQFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFR 298
LTL E + KD + Q+ + ++ +K L+I +LKL+L++ KA++F N ++ +R
Sbjct: 248 LTLTE-EEAKDS--RSLLSQYVLKVDNDAEKFLHIYVILKLKLIKGKAILFVNDVERCYR 304
Query: 299 LKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTK------EKDQS- 351
LKLFLE+F I+ +LN ELP NSR H ++EFN G++DY+IATD++ + + DQ+
Sbjct: 305 LKLFLEQFSIRCCVLNRELPINSRYHTIQEFNKGIYDYIIATDESGARNEEVDSDSDQAM 364
Query: 352 DEGG--------------------------------HVDSR------------------- 360
DEG H++
Sbjct: 365 DEGNQDPDLDEFVQTQREAEPQQEAPSSPLAGKKRKHIEVEDEDIKMEFEGEIADAKKQL 424
Query: 361 KSKKHPKAKL---DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASV 417
K K P K+ + E+ RG+DF +V V+NF++P ++ YVHR+GRT RA G ++
Sbjct: 425 KGSKKPTKKVKAEEKEYSTSRGVDFLDVACVVNFDLPLSSRSYVHRVGRTARAGRGGVAI 484
Query: 418 SLVSPDEMKI------FEEIKSF--VGDDENEDSNIIAPFP------------LLAQNAV 457
S V + KI EE K + + D+N S + P L+ N +
Sbjct: 485 SFVVTTDYKIKGGKSHLEETKIWRRIERDQNGWSKDVYSLPAEDKPQSCIKDFTLSPNLL 544
Query: 458 ESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKK 517
RYR +D +SVT AV+E+R ++L+NEILNS KLKAHFE +P DL+ L+HDK L
Sbjct: 545 AGFRYRMQDALRSVTGKAVKEARIKELKNEILNSGKLKAHFEDHPLDLEYLRHDKPLHPA 604
Query: 518 PPASHLRDVPDYLL 531
SH++ VP YLL
Sbjct: 605 RIQSHMKYVPSYLL 618
>gi|412994181|emb|CCO14692.1| predicted protein [Bathycoccus prasinos]
Length = 668
Score = 323 bits (828), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 217/578 (37%), Positives = 316/578 (54%), Gaps = 72/578 (12%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
+E+LGLD RL+ + + + +PT Q SIPL L+G DV RA TGSGKT AYLLP LH+
Sbjct: 18 WEQLGLDERLIRSCVSRNLLRPTHAQIRSIPLTLKGLDVSCRAHTGSGKTLAYLLPSLHK 77
Query: 88 LF-----NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELC--KGQVQLKVVQLTSS 140
+F ++S + P +VLVPTREL QV E +++ C + + +V +L
Sbjct: 78 VFLQEKKKKTSREKTTNPRVIVLVPTRELATQVRKECQEILKHCGDDDEKKYRVGELPQG 137
Query: 141 MPASD-LRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGY 198
AS +R A PD++++TP + +CL + KS + D L+++VLDE DLLLS+G+
Sbjct: 138 SSASAAVREAARNCPDVLVSTPARVAQCLKDKLFPPKSVNGDGLEMMVLDECDLLLSFGH 197
Query: 199 EDDLKALSAVIPRGCQCLLMSATSSSD-VDKLKKLILHNPYILTLPEVGDVKDEVIPKN- 256
E D+K + G Q +++SAT++S+ V LK L+L P + +V +++ + +
Sbjct: 198 EKDIKYIFERCREGVQTVMVSATTTSEEVGNLKSLLLSKPAEVDCDDVEEMEQKEREERE 257
Query: 257 ------------VQQFW--ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLF 302
+ F I + DKLLY++ LL+L L +KK LIF D A R +LF
Sbjct: 258 MRKELKKKKKPLITHFGLEIKKGKNDKLLYLMALLRLGLCKKKILIFVKDADEAVRARLF 317
Query: 303 LEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKE--------------- 347
L KFG+ L++ELP NSR HILEEFN G+ D L+A + +
Sbjct: 318 LHKFGVLCVALHSELPANSRAHILEEFNRGVHDVLVAAAEDDSSSNSSNDGSNANEKENA 377
Query: 348 ---------KDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAA 398
+ K K++ AK DSEFGV RG+DFK VHTVINFE+P+
Sbjct: 378 KEEEEEEEEQPTRKSKKERKKEKEKRNQAAKKDSEFGVSRGVDFKKVHTVINFEVPKTFE 437
Query: 399 GYVHRIGRTGRAYNTGASVSLVSP-DEMKIFEEIKSFVGDDENEDSN------------- 444
Y HR+GRTGRA TG +++ P DE +K + +
Sbjct: 438 AYQHRVGRTGRAGATGVAITFFGPSDEEAYHVLLKGYADAAAVAKAAEAKEEDDDEEEDE 497
Query: 445 --------IIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKA 496
+ PF L + A E+LRYRAED +S++K AV+++R ++LR E+LNSE+L +
Sbjct: 498 REEEDVDDFLKPFERLPKEATEALRYRAEDTLRSISKSAVKDARLRELRVELLNSERLAS 557
Query: 497 HFEVNPKDLDLLKHDKDLSKKPPAS-HLRDVPDYLLDA 533
HFE NP DL+LL+HD +SK+ A+ HL +P YL +A
Sbjct: 558 HFEENPDDLNLLRHDSSISKRDDANKHLSHLPAYLRNA 595
>gi|3776007|emb|CAA09206.1| RNA helicase [Arabidopsis thaliana]
Length = 259
Score = 321 bits (822), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 179/257 (69%), Positives = 214/257 (83%), Gaps = 8/257 (3%)
Query: 325 ILEEFNAGLFDYLIATDD-TQTKEKDQSDEG-GHVDSRKSKKHPKAKLDSEFGVVRGIDF 382
ILE+FNAGLFDYLIATDD +QTK++ + +G + +++K+ K K KLD+EFGVVRGIDF
Sbjct: 1 ILEQFNAGLFDYLIATDDNSQTKKQKEEAKGEANKENKKNNKRTKPKLDAEFGVVRGIDF 60
Query: 383 KNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENED 442
K VHTVINF+MPQ+ GY+HRIGRTGRAY++G+SVSL+SPDEM+ FE+IKSF+ D+N+D
Sbjct: 61 KKVHTVINFDMPQSVTGYIHRIGRTGRAYSSGSSVSLISPDEMEGFEDIKSFLASDKNKD 120
Query: 443 SNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNP 502
+II PFPLL +NAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEI+NSEKLKAHFE NP
Sbjct: 121 IDIITPFPLLTENAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEIINSEKLKAHFEANP 180
Query: 503 KDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRR 562
+DLDLL+HDK LSK PA HL+D+P+YL+DAKTQEA KMVKLARAAMGN S G R
Sbjct: 181 RDLDLLRHDKPLSKTAPAPHLKDIPEYLVDAKTQEASKMVKLARAAMGNTRRSGGGGGRN 240
Query: 563 KF------RKSDPLKSF 573
+ SDPLK+F
Sbjct: 241 NKNKKRSRKGSDPLKTF 257
>gi|392579442|gb|EIW72569.1| hypothetical protein TREMEDRAFT_72807 [Tremella mesenterica DSM
1558]
Length = 606
Score = 314 bits (804), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 211/571 (36%), Positives = 316/571 (55%), Gaps = 103/571 (18%)
Query: 33 LDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNES 92
LD R++ AL PTL+Q +IPL+LEGKDV+A+A+TGSGKT AY +P L ++ +
Sbjct: 23 LDARILRALADLSFAHPTLVQAKAIPLLLEGKDVLAKARTGSGKTAAYAVPALQKILDV- 81
Query: 93 SPKSKLAPAA--------LVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
K L+PA+ L+LVPTREL QV + +L+ + + + +SS S
Sbjct: 82 --KETLSPASENYQVTRSLILVPTRELSLQVTKFITSLLAYSE---HITIYNASSS---S 133
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLK 203
LRA PDI+++TP + +L+S+ L +LV+DEADL+LSYG++++L+
Sbjct: 134 TLRA---DSPDIIVSTPSRL-----LTLLESRQVDLTHLVLLVIDEADLVLSYGHKEELQ 185
Query: 204 AL----SAVIPR-GCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-- 256
L IPR G Q LMSAT +V +K +ILHNP ILTL E P +
Sbjct: 186 RLCDPNEGWIPRLGVQGCLMSATLGEEVQSIKGMILHNPAILTLSE---------PTSSL 236
Query: 257 VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAE 316
+ Q++ SERDK L + LLKL+L++ K+++F NT+D + +KLFLE+FGIKS ++NAE
Sbjct: 237 LTQYYTHTSERDKFLLLYVLLKLKLIRGKSIVFVNTVDRGYMVKLFLEQFGIKSCVVNAE 296
Query: 317 LPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSR---------------- 360
LP SR H++EEFN G++D ++ATD+ + +E V++
Sbjct: 297 LPLGSRYHVVEEFNRGVYDVIVATDEVAGDGEPPEEESQSVEAELDEGAEEGGEGNDAAE 356
Query: 361 -------------------KSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYV 401
++K K + D + RGIDF + +VINF++P N Y+
Sbjct: 357 EVAEEKKAGSSKRKVPPPLNNRKRQKRQKDPASSLARGIDFTSASSVINFDLPTNPTAYM 416
Query: 402 HRIGRTGRAYNTGASVSLV------SPDEMK------------IFEEIKSFV---GDDEN 440
HR+GRT RA ++G S+S + S D+++ ++E I V G E
Sbjct: 417 HRVGRTARAGHSGLSLSFIVSRSKWSQDKLRQVSLSTAEHDEEVWERILYRVSKEGGGEM 476
Query: 441 EDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEV 500
++ + ++ ++ RYR ED KSVT V+++R +++R E+LNSEKLKAHF
Sbjct: 477 KEWDWGG-----RKSEIDGFRYRMEDALKSVTTKRVQDARREEVRRELLNSEKLKAHFAA 531
Query: 501 NPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 531
NP DL+ L+HD L SHL+ VP YL+
Sbjct: 532 NPLDLNYLRHDAPLHPARIQSHLKHVPSYLM 562
>gi|405945579|gb|EKC17390.1| Putative ATP-dependent RNA helicase DDX56 [Crassostrea gigas]
Length = 446
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 174/428 (40%), Positives = 266/428 (62%), Gaps = 28/428 (6%)
Query: 22 AEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYL 81
+E+ SF E+GLD RL+ A+++ G +PT IQ+ +IPL L+GKD++ARA+TGSGKT A+
Sbjct: 2 SEDTLSFHEMGLDDRLLKAISQLGWSEPTPIQEKAIPLALDGKDILARARTGSGKTAAFC 61
Query: 82 LPLLHRLFN-ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSS 140
+P++ ++ + + ++ ALVL PT+ELC Q Y +M L C +V KV+ ++
Sbjct: 62 IPVIQKILTAKQTSSTEQCVKALVLTPTKELCHQAYRNLMDLTSSCSREV--KVLDISPQ 119
Query: 141 MPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYED 200
+P + L PDI++ATP + G L + SL++L++DEADLL S+GYED
Sbjct: 120 VPLPTQKPMLMEKPDIIVATPTRALAHIKAGNLDLRQ---SLELLIIDEADLLFSFGYED 176
Query: 201 DLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ-- 258
D++ + + +P+ Q LMSAT S DV LK+++LHN IL L E +P+ Q
Sbjct: 177 DVRGILSNLPKIYQAFLMSATLSEDVRALKRMVLHNAVILKLEE------SQLPEASQLT 230
Query: 259 QFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELP 318
Q+ I C E+DK + L+KL L++ K++IF N ++ ++LKLFLE+F I + +LN+ELP
Sbjct: 231 QYHIKCEEQDKFTLVYALMKLNLLRGKSIIFVNEVNRCYKLKLFLEQFAIPACVLNSELP 290
Query: 319 QNSRLHILEEFNAGLFDYLIATD-----DTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSE 373
NSR HI+ +FN GL+D +IA+D D +TK +D K K + K D E
Sbjct: 291 VNSRCHIVNQFNEGLYDIIIASDENLLMDPKTKP---------LDPEKKKDKKRKKKDKE 341
Query: 374 FGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKS 433
+GV RGIDF+NV VINF+ P + Y+HR+GRT R N G+++S VS +M + E++
Sbjct: 342 YGVSRGIDFQNVSNVINFDFPCDVDTYIHRVGRTARGDNQGSALSFVSVKDMDLLVEVEK 401
Query: 434 FVGDDENE 441
+ + +E
Sbjct: 402 TLSESGSE 409
>gi|42539171|gb|AAS18604.1| RNA helicase [Choristoneura fumiferana]
Length = 565
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 205/568 (36%), Positives = 319/568 (56%), Gaps = 21/568 (3%)
Query: 23 EEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLL 82
E++ F E+ LD R++ A+ + +PTLIQ+ +IPL+LEGKDV+ RA+TGSGKT A+ +
Sbjct: 4 EKKVMFHEMELDDRIIKAVAQLAWSEPTLIQETAIPLLLEGKDVLMRARTGSGKTAAFTI 63
Query: 83 PLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMP 142
P++ ++ + ++ AL+L P++ELC Q+ S + L C +V + + ++++
Sbjct: 64 PVIQKILHLNNTSEHQCIRALILSPSKELCGQITSVIADLTLKCAREV--RCIDISANGD 121
Query: 143 ASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 202
+A L+ PDIV+ATP K L+ + D L +LV+DEADL+ +GYED++
Sbjct: 122 MQTQKALLSDKPDIVVATPS---KALAHLKANNMRLKDDLAMLVVDEADLVFPFGYEDEI 178
Query: 203 KALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWI 262
K L +P+ Q +L SAT S DV LKK+ L NP L L +D+ +
Sbjct: 179 KELLGHLPKIYQAVLASATLSDDVLSLKKIGLRNPVTLKL------EDQSWGHHHSYNTS 232
Query: 263 SCSE-RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 321
S S R K + + LKL LV+ K++IF T+D ++LKL+LE+F I S +LN+ELP
Sbjct: 233 SYSPGRCKSRHFVCPLKLNLVRGKSIIFVRTVDRCYKLKLYLEQFKIGSCVLNSELPAAV 292
Query: 322 RLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGID 381
R +++FN G + ++A+D+ ++ D +K K+ K K D E GV RGID
Sbjct: 293 RCLSVDQFNRGRYQIIVASDEKALEKPDGGILPIEERQKKKKQASKRKRDKESGVSRGID 352
Query: 382 FKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENE 441
F++V VINF+ P + YVHR GRT R N+G+ +S VS E + +
Sbjct: 353 FQHVSNVINFDFPLDVNSYVHRAGRTARGNNSGSVLSFVSIREKPLMDPGWRTTYQGGVN 412
Query: 442 DSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVN 501
++ + A VE RYR+ D ++VT+IAVRE+R ++++ E+LN +KL+ +FE N
Sbjct: 413 GQKVLQKYE-FALEEVEGFRYRSRDPWRAVTRIAVREARLKEIKQELLNCKKLQGYFEEN 471
Query: 502 PKDLDLLKHDKDLSKKPPASHLRDVPDYLLDA--KTQEACKMVKLARAAMGNKNSSRRQG 559
P DL L+ DK L L VP+YLL +T+E + A A RRQG
Sbjct: 472 PTDLAALRRDKALHTVRVQPQLAHVPEYLLPHALRTEEPEADAEAAEAPAPAPQKKRRQG 531
Query: 560 ----PRRKF--RKSDPLKSFSAEPTKRA 581
R K+ R+++PL+SF+ + +
Sbjct: 532 FGSAKRHKYQARQNNPLRSFNVKSVNKT 559
>gi|321265279|ref|XP_003197356.1| ATP-dependent RNA helicase [Cryptococcus gattii WM276]
gi|317463835|gb|ADV25569.1| ATP-dependent RNA helicase, putative [Cryptococcus gattii WM276]
Length = 627
Score = 313 bits (802), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 212/568 (37%), Positives = 304/568 (53%), Gaps = 87/568 (15%)
Query: 33 LDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNES 92
+D R++ AL + PTL+Q +IPL+LEGKDV+ARA+TGSGKT AY++P + ++
Sbjct: 28 IDSRVLVALADQKFAHPTLVQAKAIPLLLEGKDVLARARTGSGKTAAYVVPAVQKILEA- 86
Query: 93 SPKSKLAPA--------ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
K+ L+PA A++LVPT+EL QV S + + + C+G VQ V S S
Sbjct: 87 --KADLSPASAEYQATRAVILVPTKELALQVSSFIKNVTKYCEGLVQCVDVAAGGS---S 141
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
R L PDIVI+TP L + + L L +DEADLLLSYG++DDL
Sbjct: 142 IQRVLLNDKPDIVISTP----TKLLSLLQSKSLSLSELSFLAIDEADLLLSYGFKDDLTR 197
Query: 205 L----SAVIPR-GCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
+ IP+ G Q LMSAT S DV+ +K LIL NP ILTL E + Q
Sbjct: 198 IMDPTCGWIPKLGVQGCLMSATLSDDVEGIKGLILRNPAILTLSEPAAASSLL-----TQ 252
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+ SERDK L I LLKL+L++ K++IF N ++ +R+KLFLE+FG+K ++N+ELP
Sbjct: 253 HYTHTSERDKFLLIYVLLKLKLIRGKSIIFVNDVERGYRVKLFLEQFGVKCCVVNSELPL 312
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKE-------------------------------- 347
SR H++EEFN G++D ++ATD+ +
Sbjct: 313 ASRYHVVEEFNRGVYDVIVATDEGAGADAEEEEDVKQEENESEEEEGEDADEEAKDEEKE 372
Query: 348 -KDQSDEGGHVDSRKSKKHPKA------KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGY 400
K +++ R++ P + D + RGIDF + +VINF++P + Y
Sbjct: 373 TKGEAEPAAGPSKRRAASPPSKPNKRARRADPTSSLARGIDFTSASSVINFDLPLTSTSY 432
Query: 401 VHRIGRTGRAYNTGASVSLVSPDEM----------------KIFEEIKSFVGDDENEDSN 444
+HR+GRT RA +G ++S V P E K+FE IK V + E +
Sbjct: 433 MHRVGRTARAGQSGLALSFVVPREKWGKDKAVSIKSAEKDEKVFERIKERV---KKESGS 489
Query: 445 IIAPFPLLAQNA-VESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPK 503
I + + +E RYR ED K+VT V E+R +++R E+LNSEKLK+HF NP
Sbjct: 490 EIKEWDWGGRKGEIEGFRYRMEDALKAVTGKRVAEARREEVRRELLNSEKLKSHFAANPL 549
Query: 504 DLDLLKHDKDLSKKPPASHLRDVPDYLL 531
DL L+HD L +HL+ VP+YL+
Sbjct: 550 DLSYLRHDAPLHPTRQQTHLKHVPNYLM 577
>gi|58262184|ref|XP_568502.1| hypothetical protein CNM02050 [Cryptococcus neoformans var.
neoformans JEC21]
gi|134118521|ref|XP_772034.1| hypothetical protein CNBM1920 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338818062|sp|P0CR11.1|DBP9_CRYNB RecName: Full=ATP-dependent RNA helicase DBP9
gi|338818063|sp|P0CR10.1|DBP9_CRYNJ RecName: Full=ATP-dependent RNA helicase DBP9
gi|50254640|gb|EAL17387.1| hypothetical protein CNBM1920 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57230675|gb|AAW46985.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 627
Score = 313 bits (802), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 214/567 (37%), Positives = 306/567 (53%), Gaps = 85/567 (14%)
Query: 33 LDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNES 92
+D R++ AL + PTL+Q +IPL+LEGKDV+ARA+TGSGKT AY++P + ++
Sbjct: 28 IDSRVLVALADQKFAHPTLVQAKAIPLLLEGKDVLARARTGSGKTAAYIVPAVQKILEA- 86
Query: 93 SPKSKLAPA--------ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
K+ L+PA A++LVPT+EL QV S + + C G VQ V ++ AS
Sbjct: 87 --KADLSPASAEYQATRAIILVPTKELALQVSSFTKNVTKYCDGLVQCVDV---AAGGAS 141
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
R L PDIVI+TP L + + L L +DEADLLLSYG++DDL
Sbjct: 142 IQRVLLNDKPDIVISTP----TKLLSLLQSKSLSLSQLSFLAIDEADLLLSYGFKDDLTR 197
Query: 205 L----SAVIPR-GCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
+ S IP+ G Q LMSAT S DV+ +K L+L NP ILTL E + Q
Sbjct: 198 IMDPTSGWIPKLGVQGCLMSATLSDDVEGIKGLVLRNPAILTLSEPASASSLL-----SQ 252
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+ SERDK L I LLKL+L++ K++IF N ++ +R+KLFLE+FG+K ++N+ELP
Sbjct: 253 HYTHTSERDKFLLIYVLLKLKLIRGKSIIFVNDVERGYRVKLFLEQFGVKCCVVNSELPL 312
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGG------------------------ 355
SR H++EEFN G++D ++ATD+ + ++ ++
Sbjct: 313 ASRYHVVEEFNRGVYDVVVATDEGAGADAEEEEDVKQEESESEGEEDEDDDKEAEDKEKE 372
Query: 356 --------------HVDSRKSKKHPKA-KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGY 400
S SK + +A + D + RGIDF + +VINF++P + Y
Sbjct: 373 AKEEAKPAPGPSKRRATSPPSKPNKRARRADPTSSLARGIDFTSASSVINFDLPLTSTSY 432
Query: 401 VHRIGRTGRAYNTGASVSLVSPDEM----------------KIFEEIKSFVGDDENEDSN 444
+HR+GRT RA +G ++S V P E K+FE IK V + DS
Sbjct: 433 MHRVGRTARAGQSGLALSFVVPRENWGKDKAVSIKSAEKDEKVFERIKERV--KKESDSE 490
Query: 445 IIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKD 504
I + +E RYR ED K+VT V E+R +++R E+LNSEKLK+HF NP D
Sbjct: 491 IKEWDWKGRKGEIEGFRYRMEDALKAVTGKRVAEARREEVRRELLNSEKLKSHFAANPLD 550
Query: 505 LDLLKHDKDLSKKPPASHLRDVPDYLL 531
L L+HD L +HL+ VP+YL+
Sbjct: 551 LSYLRHDAPLHPARQQTHLKHVPNYLM 577
>gi|51948394|ref|NP_001004211.1| probable ATP-dependent RNA helicase DDX56 [Rattus norvegicus]
gi|50925531|gb|AAH78919.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [Rattus norvegicus]
Length = 482
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 201/499 (40%), Positives = 283/499 (56%), Gaps = 44/499 (8%)
Query: 84 LLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPA 143
LLH+ + P + A LVLVPT+EL +Q S + L C V +V ++++ +
Sbjct: 5 LLHK--KATGPVMEQAVRGLVLVPTKELARQAQSMIQQLASYCARDV--RVANVSAAEDS 60
Query: 144 SDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLK 203
+ RA L PD+V+ TP + L L+ DSL++LV+DEADLL S+G+ED+LK
Sbjct: 61 ASQRAVLMEKPDVVVGTPSRILNHLQQKNLK---LRDSLELLVVDEADLLFSFGFEDELK 117
Query: 204 ALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWIS 263
+L +PR Q LMSAT + DV LK+L+LHNP L L E P +QQF +
Sbjct: 118 SLLCHLPRIYQAFLMSATFNEDVQTLKELVLHNPVTLKLQE----SQLPGPDQLQQFQVV 173
Query: 264 C-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 322
C +E DK L + LLKL L++ KAL+F NT++ +RL+LFLE+F I S +LN ELP SR
Sbjct: 174 CETEEDKFLLLYALLKLSLIRGKALLFVNTLERGYRLRLFLEQFSIPSCVLNGELPLRSR 233
Query: 323 LHILEEFNAGLFDYLIATD----DTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVR 378
HI+ +FN GL+D +IATD Q K K Q + K KA D E GV R
Sbjct: 234 CHIISQFNQGLYDCVIATDAEILGPQVKAKRQG---------RGSKGDKAS-DPESGVAR 283
Query: 379 GIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD 438
GIDF +V V+NF++P A YVHR GRT RA N G ++ V P E +I+ + +
Sbjct: 284 GIDFHHVSAVLNFDLPPTAEAYVHRAGRTARANNPGIVLTFVLPTEQSSLGKIEELLSGE 343
Query: 439 ENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHF 498
+ I+ P+ + +ES RYR D +SVTK A+RE+R ++++ E+L+SEKLK +F
Sbjct: 344 GQ--APILLPYQFQMEE-IESFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYF 400
Query: 499 EVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQ 558
E NP+DL LL+HD L HL +VPDYL+ A A + + RR+
Sbjct: 401 EDNPRDLQLLRHDLPLHPAVVKPHLGNVPDYLVPA-----------ALRGLVHPRKKRRK 449
Query: 559 GP----RRKFRKSDPLKSF 573
P +K + +PL+ F
Sbjct: 450 MPFSRKAKKVKTQNPLRDF 468
>gi|401885210|gb|EJT49333.1| ATP-dependent RNA helicase [Trichosporon asahii var. asahii CBS
2479]
Length = 614
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 221/555 (39%), Positives = 312/555 (56%), Gaps = 76/555 (13%)
Query: 33 LDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNES 92
LD R++ AL PTL+Q +IPL+LEGKDV+ARA+TGSGKT AY++P + R+
Sbjct: 25 LDARILRALADLKFANPTLVQAKAIPLLLEGKDVLARARTGSGKTAAYVVPAVQRVLEL- 83
Query: 93 SPKSKLAPA--------ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
K +PA A++LVPTREL QV + V ++ C+G V VV + S A+
Sbjct: 84 --KGATSPAESDYQVTRAVILVPTRELAMQVTNFVKSISTYCEGLVS--VVNVASG--AT 137
Query: 145 DLRAALAGP-PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDL 202
+++ L PDIV+ATP K L+ +LQSKS L L +DEADLLLSYG++DDL
Sbjct: 138 NVQKILLNDNPDIVVATP---TKLLA--LLQSKSIDLAHLAFLAIDEADLLLSYGHKDDL 192
Query: 203 K-----ALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNV 257
A+ V G Q LMSAT S DV+ +K L+L NP ILTL E +
Sbjct: 193 TRIMDPAMGFVPKLGVQGCLMSATLSEDVEGVKGLVLRNPAILTLSEPATASSLL----T 248
Query: 258 QQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAEL 317
Q F S SERDK L + LLKL+L++ K++IF N I+ +R++LFLE+FGIK ++N+EL
Sbjct: 249 QHFTFS-SERDKFLLLFVLLKLKLIKGKSIIFVNDIERGYRVRLFLEQFGIKCCVVNSEL 307
Query: 318 PQNSRLHILEEFNAGLFDYLIATDDTQ--------------------TKEKDQSDEGGHV 357
P SR H++EEFN G++ +IATD+ ++++++ E G
Sbjct: 308 PLASRYHVVEEFNRGVYQVVIATDEASLGDEEPEDEEEESEAEEDAEEEQEEKNAEAGPS 367
Query: 358 DSRKSKKHPKA----KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNT 413
R S P A K S + RGIDF + +VINF++P Y+HR+GRT RA ++
Sbjct: 368 KRRASSPAPGAPGKKKKRSAGSMARGIDFTSASSVINFDLPTTTTAYLHRVGRTARAGHS 427
Query: 414 GASVSLVSPDEM----------------KIFEEIKSFVGDDENEDSNIIAPFPLLAQNA- 456
G ++S V P + ++F+ IKS V + D I + +
Sbjct: 428 GLALSFVVPKDQWGKDKSVSIKTAERDEQVFDRIKSKVKAEGGGD---IKEWDWGGRRGE 484
Query: 457 VESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSK 516
+E RYR ED ++VT V ++R +++R E+LNSEKLK HF NP DL L+HD L
Sbjct: 485 IEGFRYRMEDALRAVTSKRVSDARREEVRRELLNSEKLKQHFAANPLDLAYLRHDAPLHP 544
Query: 517 KPPASHLRDVPDYLL 531
+SHL+ VP YL+
Sbjct: 545 GRTSSHLKHVPGYLM 559
>gi|156840672|ref|XP_001643715.1| hypothetical protein Kpol_1009p3 [Vanderwaltozyma polyspora DSM
70294]
gi|156114338|gb|EDO15857.1| hypothetical protein Kpol_1009p3 [Vanderwaltozyma polyspora DSM
70294]
Length = 479
Score = 312 bits (799), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 197/495 (39%), Positives = 284/495 (57%), Gaps = 60/495 (12%)
Query: 122 LIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS 181
+I C + + + ++S MP+S L + L P+I+IATPG + L T V +S S +
Sbjct: 1 MILYCSNDI--RSLNISSDMPSSVLTSLLLEKPEIIIATPGKLMTLLDTNV-ESVSLEE- 56
Query: 182 LKILVLDEADLLLSYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYI 239
LK LV+DE DL+L++GY++DL ++ +P + Q LMSAT + D+ +LKK P I
Sbjct: 57 LKFLVIDEVDLVLTFGYKEDLSKIAEYLPLKKNLQTFLMSATLNDDIQELKKEFCRAPAI 116
Query: 240 LTL--PEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAF 297
L E+ K+++I Q+++ SE DK L + KL L++ K LIF N ID +
Sbjct: 117 LKFNDDEISKDKNKLI-----QYYVKTSEFDKFLLCYVIFKLGLIKGKTLIFVNNIDRGY 171
Query: 298 RLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ------------- 344
RLKL LE+FGIKS ILN+ELP NSR HI+++FN ++ LIATDDT+
Sbjct: 172 RLKLVLEQFGIKSCILNSELPANSRQHIVDQFNKNVYHLLIATDDTEYIKEEDEENDDEI 231
Query: 345 ---TKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYV 401
++E+D+ ++ +K KK K K D EFGV RG+DF+NV V+NF++P A YV
Sbjct: 232 ETNSEEQDKVEDSNDTKDKKGKKASKIKKDKEFGVSRGVDFQNVACVLNFDLPTTAKSYV 291
Query: 402 HRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA-------------- 447
HRIGRT RA TG ++S V P +K F + K + D I++
Sbjct: 292 HRIGRTARAGKTGTAISFVVP--LKEFGKHKPSMYQSTKRDEKILSRIIKQQSKLGLELQ 349
Query: 448 PFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDL 507
P+ + +E RYR ED ++VT++A+RE+R ++L++E+L SEKLK HFE NP++L
Sbjct: 350 PYSFDTKQ-IEGFRYRMEDGFRAVTQVAIREARVKELKDELLASEKLKRHFEENPQELQS 408
Query: 508 LKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMV---------KLARAAMGNKNSSRRQ 558
L+HDK+L HL+ VPDYLL A+ +E K V K R NK +R
Sbjct: 409 LRHDKELHPSRVQQHLKRVPDYLLPAEAREGKKKVGFVPFHSVKKSNRHKKNNKVFKKRS 468
Query: 559 GPRRKFRKSDPLKSF 573
G KSDPLK+F
Sbjct: 469 GS-----KSDPLKNF 478
>gi|393911673|gb|EFO27871.2| DEAD/DEAH box helicase [Loa loa]
Length = 629
Score = 312 bits (799), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 193/531 (36%), Positives = 306/531 (57%), Gaps = 30/531 (5%)
Query: 14 QAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTG 73
++ E E +F++ GLD +L+ + + G ++PTLIQ IP E K+++ARA+TG
Sbjct: 67 ESAERAVNLESVMTFKDFGLDEQLLKVIGELGWERPTLIQSRMIPAAFENKNILARARTG 126
Query: 74 SGKTFAYLLPLLHRLFN---ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQV 130
SGKT A++LP++ R+ SS P A+ +VPT+EL +Q YS + L E +
Sbjct: 127 SGKTAAFMLPIIQRVLQLKCNSSSNGDAGPFAVFIVPTKELAKQTYSLLCRLTEKFPFLM 186
Query: 131 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEA 190
L +L + + L PD V++TP + LS + +S+K +VLDEA
Sbjct: 187 SLNFSELNINTDDN----WLLKKPDFVVSTPSRFLQALS----KYGKPCESVKHVVLDEA 238
Query: 191 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD 250
DLLLS+GY ++++ + +P Q + SAT + V+ LK+L + P IL +K+
Sbjct: 239 DLLLSFGYSEEMRLIKNFLPTHHQTIFTSATMTEKVEALKELYVTGPIILM-----KLKE 293
Query: 251 EVIPKNVQ--QFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFG 307
+P + Q Q+ ISC +E ++ L LLKL+L+ K++IF D ++L LFL+ F
Sbjct: 294 GQLPNSDQLSQYHISCQNEEERFAIFLALLKLKLIIGKSIIFVRDTDRCYQLGLFLQAFN 353
Query: 308 IKSAILNAELPQNSRLHILEEFNAGLFDYLIATD------DTQTKEKDQSDEGGHVDSRK 361
I+S ILNA++P NSR H++E+FN G + Y+IA+D D+Q KD+ D+G +
Sbjct: 354 IRSCILNAQMPVNSRCHVVEQFNEGRYSYVIASDINDVSCDSQAVMKDE-DDGNVSRKER 412
Query: 362 SKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS 421
+K + +D E GV RGIDF +V VINF+ P + Y+HR+GRT R +N G ++S VS
Sbjct: 413 IRKKKQKHIDRESGVSRGIDFHHVANVINFDFPTSLNSYIHRVGRTARGWNKGNALSFVS 472
Query: 422 PDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRA 481
P E EE++ + + I P+ + + +ES RA +V + TK A+RE+R
Sbjct: 473 PQEKPFLEEVQDEINAQLGHRA--ITPYEVRIKE-LESFFLRAREVLVACTKTAIREARL 529
Query: 482 QDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDL-SKKPPASHLRDVPDYLL 531
++R E+L S++L+A+F NP++ L+HDK L S + + DVPDY++
Sbjct: 530 AEIRAEVLRSKRLEAYFAKNPRERAALEHDKKLFSVNLHSPAIADVPDYMV 580
>gi|312066294|ref|XP_003136202.1| DEAD/DEAH box helicase [Loa loa]
Length = 621
Score = 311 bits (798), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 193/531 (36%), Positives = 306/531 (57%), Gaps = 30/531 (5%)
Query: 14 QAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTG 73
++ E E +F++ GLD +L+ + + G ++PTLIQ IP E K+++ARA+TG
Sbjct: 59 ESAERAVNLESVMTFKDFGLDEQLLKVIGELGWERPTLIQSRMIPAAFENKNILARARTG 118
Query: 74 SGKTFAYLLPLLHRLFN---ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQV 130
SGKT A++LP++ R+ SS P A+ +VPT+EL +Q YS + L E +
Sbjct: 119 SGKTAAFMLPIIQRVLQLKCNSSSNGDAGPFAVFIVPTKELAKQTYSLLCRLTEKFPFLM 178
Query: 131 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEA 190
L +L + + L PD V++TP + LS + +S+K +VLDEA
Sbjct: 179 SLNFSELNINTDDN----WLLKKPDFVVSTPSRFLQALS----KYGKPCESVKHVVLDEA 230
Query: 191 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD 250
DLLLS+GY ++++ + +P Q + SAT + V+ LK+L + P IL +K+
Sbjct: 231 DLLLSFGYSEEMRLIKNFLPTHHQTIFTSATMTEKVEALKELYVTGPIILM-----KLKE 285
Query: 251 EVIPKNVQ--QFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFG 307
+P + Q Q+ ISC +E ++ L LLKL+L+ K++IF D ++L LFL+ F
Sbjct: 286 GQLPNSDQLSQYHISCQNEEERFAIFLALLKLKLIIGKSIIFVRDTDRCYQLGLFLQAFN 345
Query: 308 IKSAILNAELPQNSRLHILEEFNAGLFDYLIATD------DTQTKEKDQSDEGGHVDSRK 361
I+S ILNA++P NSR H++E+FN G + Y+IA+D D+Q KD+ D+G +
Sbjct: 346 IRSCILNAQMPVNSRCHVVEQFNEGRYSYVIASDINDVSCDSQAVMKDE-DDGNVSRKER 404
Query: 362 SKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS 421
+K + +D E GV RGIDF +V VINF+ P + Y+HR+GRT R +N G ++S VS
Sbjct: 405 IRKKKQKHIDRESGVSRGIDFHHVANVINFDFPTSLNSYIHRVGRTARGWNKGNALSFVS 464
Query: 422 PDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRA 481
P E EE++ + + I P+ + + +ES RA +V + TK A+RE+R
Sbjct: 465 PQEKPFLEEVQDEINAQLGHRA--ITPYEVRIKE-LESFFLRAREVLVACTKTAIREARL 521
Query: 482 QDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDL-SKKPPASHLRDVPDYLL 531
++R E+L S++L+A+F NP++ L+HDK L S + + DVPDY++
Sbjct: 522 AEIRAEVLRSKRLEAYFAKNPRERAALEHDKKLFSVNLHSPAIADVPDYMV 572
>gi|405123669|gb|AFR98433.1| ATP-dependent RNA helicase DBP9 [Cryptococcus neoformans var.
grubii H99]
Length = 625
Score = 310 bits (793), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 212/567 (37%), Positives = 309/567 (54%), Gaps = 86/567 (15%)
Query: 33 LDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNES 92
+D R++ AL + PTL+Q +IPL+LEGKDV+ARA+TGSGKT AY++P + ++
Sbjct: 27 IDSRVLVALADQKFAHPTLVQAKAIPLLLEGKDVLARARTGSGKTAAYVVPAVQKILEA- 85
Query: 93 SPKSKLAPA--------ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
K+ L+PA A++LVPT+EL QV S + + + C+G VQ V ++ AS
Sbjct: 86 --KADLSPASAEYQATRAVILVPTKELALQVTSFIKNVTKYCEGLVQCVDV---AAGGAS 140
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
R L PDIVI+TP L + + L +L +DEADLLLSYG++DDL
Sbjct: 141 IQRVLLNDKPDIVISTP----TKLLSLLQSKSLSLSQLSLLAIDEADLLLSYGFKDDLTR 196
Query: 205 L----SAVIPR-GCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
+ S IP+ G Q LMSAT S DV+ +K L+L NP ILTL E + Q
Sbjct: 197 IMDPTSGWIPKLGVQGCLMSATLSDDVEGIKGLVLRNPAILTLSEPAAASSLL-----AQ 251
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+ SERDK L I LLKL+L++ K++IF N ++ +R+KLFLE+FG+K ++N+ELP
Sbjct: 252 HYTHTSERDKFLLIYVLLKLKLIRGKSIIFVNDVERGYRVKLFLEQFGVKCCVVNSELPL 311
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGG------------------------ 355
SR H++EEFN G++D ++ATD+ + ++ ++
Sbjct: 312 ASRYHVVEEFNRGVYDVVVATDEGAGADAEEEEDVKQEEGESEGEEDEDVDKEAKDEEEA 371
Query: 356 -------------HVDSRKSKKHPKA-KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYV 401
S SK + +A + D + RGIDF + +VINF++P + Y+
Sbjct: 372 KEDAKPAPGPSKRRATSPPSKPNKRARRADPTSSLARGIDFTSASSVINFDLPLTSTSYM 431
Query: 402 HRIGRTGRAYNTGASVSLVSPDEM----------------KIFEEIKSFVGDDENEDSNI 445
HR+GRT RA +G ++S V P E K+FE IK + E +
Sbjct: 432 HRVGRTARAGQSGLALSFVVPREKWGKDKAVSIKSAEKDEKVFERIKERA---KKESGSE 488
Query: 446 IAPFPLLAQNA-VESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKD 504
I + + +E RYR ED K+VT V E+R +++R E+LNSEKLK+HF NP D
Sbjct: 489 IKEWDWGGRKGEIEGFRYRMEDALKAVTGKRVAEARREEVRRELLNSEKLKSHFAANPLD 548
Query: 505 LDLLKHDKDLSKKPPASHLRDVPDYLL 531
L L+HD L +HL+ VP+YL+
Sbjct: 549 LSYLRHDTPLHPTRQQTHLKHVPNYLM 575
>gi|47228579|emb|CAG05399.1| unnamed protein product [Tetraodon nigroviridis]
Length = 447
Score = 310 bits (793), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 200/516 (38%), Positives = 273/516 (52%), Gaps = 77/516 (14%)
Query: 22 AEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYL 81
A E F E+GLD RL+ A+ G +PTLIQ+ +IPL LEGKD++ARA+TGSGKT AY
Sbjct: 2 ASERLQFHEMGLDDRLLKAVADLGWSQPTLIQEKAIPLALEGKDLLARARTGSGKTAAYA 61
Query: 82 LPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSM 141
+P++ R+ + AL+LVPT+EL QQV Q + QLT+
Sbjct: 62 VPVIQRILASKQSVREQDVKALILVPTKELGQQV---------------QTMIRQLTAYC 106
Query: 142 PASDLRAA-LAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYED 200
+ D+R A ++G D LST
Sbjct: 107 -SRDVRVADISGKAD------------LST------------------------------ 123
Query: 201 DLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF 260
+ +P+ Q LMSAT S DV LK+L+LHNP IL L + + D +QQ+
Sbjct: 124 -----QSHLPKIYQSFLMSATLSEDVQSLKELLLHNPVILKL-QGSQLPDS---SQLQQY 174
Query: 261 WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 320
I C E DK L I TLLKL LVQ K L+F +D ++RLKLFLE+FGI S +LN+ELP
Sbjct: 175 SIKCEEEDKFLLIYTLLKLRLVQGKTLLFVGAVDRSYRLKLFLEQFGIPSCVLNSELPVG 234
Query: 321 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL-----DSEFG 375
SR HI+ +FN G +DY+IA D+ V + K KK D EFG
Sbjct: 235 SRCHIISQFNQGFYDYIIAADEQSLAVPAVGAASADVTATKGKKKKTPDKGGKSKDKEFG 294
Query: 376 VVRGIDFKNVHTVINFEMPQNAAGYVH-RIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 434
V RG+DF+NV VINF+ P Y+H R T A + L P + I + +
Sbjct: 295 VSRGVDFQNVSNVINFDFPTTVESYIHRVGRNGRRGGTTPARLCLSYPTKRWIC--CQRW 352
Query: 435 VGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKL 494
++ +++ P+ + +E RYR D +SVTK AV+E+R ++++ E+LNSEKL
Sbjct: 353 RKLSQDHSGSVLKPYEFKMEE-IEGFRYRCRDAMRSVTKQAVKEARLKEIKQELLNSEKL 411
Query: 495 KAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYL 530
K +FE NP+DL LL+HDKDL HLR++PDYL
Sbjct: 412 KTYFEDNPRDLQLLRHDKDLHPAVVKPHLRNLPDYL 447
>gi|393227212|gb|EJD34901.1| P-loop containing nucleoside triphosphate hydrolase protein
[Auricularia delicata TFB-10046 SS5]
Length = 521
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 190/487 (39%), Positives = 277/487 (56%), Gaps = 77/487 (15%)
Query: 104 VLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGC 163
+LVPTREL +QV + + L++ C + V S+ S L++ LA PDIVI+TP
Sbjct: 1 MLVPTRELAEQVSNLLKGLLKYCDKDLTFVNVAAGST---SHLKSILADSPDIVISTPA- 56
Query: 164 MPKCLSTGVLQSKSFSDSL-KILVLDEADLLLSYGYEDDLKAL--SAVIPRGCQCLLMSA 220
+ LS +LQSK + +L + LV+DEADL+LSYG+++D+K + P Q LMSA
Sbjct: 57 --RALS--LLQSKVLTLALMESLVIDEADLILSYGHDEDMKQILGGGFFPSVYQSYLMSA 112
Query: 221 TSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLE 280
T + DV+ LK L+L +P IL L E DE + N+ Q+ + C+E DK L +LKL+
Sbjct: 113 TMTKDVETLKGLVLRSPAILRLEE-----DEDVAANLSQYAVRCNEVDKFLLTYVMLKLK 167
Query: 281 LVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIAT 340
LV+ K L+F N +D +RLKLFLE+F IKS +LN+ELP NSR HI++EFN G++DY+IAT
Sbjct: 168 LVKGKCLVFVNDVDRCYRLKLFLEQFSIKSCVLNSELPLNSRFHIVQEFNKGVYDYIIAT 227
Query: 341 DDTQTKEK-------------------------DQSDEGGHVDSRKS------------- 362
D++ K + Q G +K+
Sbjct: 228 DESGEKAEADSDAESESEAEAEDEDEADPDMLPTQRPAEGEAPPKKTLKRKRGTPPPPLT 287
Query: 363 -KKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS 421
KK K D E+GV RG+DF +V V+NF++P +A Y HR+GRT RA +G +++ V
Sbjct: 288 QKKRQKKAGDREYGVSRGVDFVDVACVLNFDLPSSARAYTHRVGRTARAGKSGMALAFVV 347
Query: 422 P-DEM----------------KIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRA 464
P DE K+F+ I+ +D+ + IA + V S RYR
Sbjct: 348 PKDEFGKNKVVGGVPSTKRDEKVFKRIE----EDQAARGSKIAEYA-FDMKQVNSFRYRM 402
Query: 465 EDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLR 524
+D ++VT+ A++E+R ++L++EILNS+KLKAHFE NP DL+ L+HDK L H++
Sbjct: 403 DDALRAVTRAAIKEARVKELKSEILNSDKLKAHFEDNPLDLEYLRHDKALHPTRVQPHMK 462
Query: 525 DVPDYLL 531
VP YL+
Sbjct: 463 HVPKYLM 469
>gi|126303427|ref|XP_001379754.1| PREDICTED: probable ATP-dependent RNA helicase DDX56-like
[Monodelphis domestica]
Length = 495
Score = 308 bits (788), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 195/514 (37%), Positives = 278/514 (54%), Gaps = 90/514 (17%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
F+ +GLD RL+ A+ ++G +PTLIQ+ +IPL LEGKD++ARA+TGSGKT AY +PLL
Sbjct: 8 GFQHMGLDQRLLQAIAEQGWARPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPLLQ 67
Query: 87 RLFNE--SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
L + + P + A LVLVPT+EL + Q Q + QLT+ +
Sbjct: 68 HLLHRKATGPVVEQAIRGLVLVPTKELAR---------------QAQTMIRQLTAYC-SR 111
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
D+R V S+ F A
Sbjct: 112 DVRV---------------------VDVSASEDF-------------------------A 125
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264
+ +PR Q LMSAT + DV LK+L+LHNP L L E P +QQF + C
Sbjct: 126 FQSHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE----SQLPGPDQLQQFQVVC 181
Query: 265 -SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+E DK L + LLKL L++ K+L+F NT++ +RL+LFLE+F I + +LN ELP SR
Sbjct: 182 ETEEDKFLLLYALLKLSLLRGKSLLFVNTLERGYRLRLFLEQFSIPACVLNGELPLRSRC 241
Query: 324 HILEEFNAGLFDYLIATDDT------QTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVV 377
HI+ +FN G +D +IATD+ + K + Q +G D+E GV
Sbjct: 242 HIISQFNQGFYDCVIATDEEVLGAPFKGKRRGQGSKGERAS------------DTESGVA 289
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RGIDF NV V+NF++P + Y+HR GRT RA N G +++ V P E +EI+ +G
Sbjct: 290 RGIDFHNVTAVLNFDLPPSPEAYIHRAGRTARANNPGTALTFVLPTERPQLKEIEEALGG 349
Query: 438 DENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAH 497
+ E ++ P+ + +E RYR D +SVTK A+RE+R ++++ E+L+SEKLK +
Sbjct: 350 ESAE--SMFLPYQFRMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTY 406
Query: 498 FEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 531
FE NP+DL LL+HD+ L HL VPDYL+
Sbjct: 407 FEDNPRDLQLLRHDRPLHPAVVKPHLGHVPDYLV 440
>gi|406694736|gb|EKC98058.1| ATP-dependent RNA helicase [Trichosporon asahii var. asahii CBS
8904]
Length = 644
Score = 307 bits (787), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 222/585 (37%), Positives = 311/585 (53%), Gaps = 106/585 (18%)
Query: 33 LDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNES 92
LD R++ AL PTL+Q +IPL+LEGKDV+ARA+TGSGKT AY++P + R+
Sbjct: 25 LDARILRALADLKFANPTLVQAKAIPLLLEGKDVLARARTGSGKTAAYVVPAVQRVLEL- 83
Query: 93 SPKSKLAPA--------ALVLVPTRELCQQVYSEVMALIELCKGQV-------------- 130
K +PA A++LVPTREL QV + V ++ C+G V
Sbjct: 84 --KGATSPAESDYQVTRAVILVPTRELAMQVTNFVKSISTYCEGLVSVVNVASGATNVQK 141
Query: 131 -------------QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKS 177
+L+ QL + A R L PDIV+ATP K L+ +LQSKS
Sbjct: 142 AQNKCGHLRCLPSELQPSQLNPQVQALTSRILLNDNPDIVVATP---TKLLA--LLQSKS 196
Query: 178 FS-DSLKILVLDEADLLLSYGYEDDLK-----ALSAVIPRGCQCLLMSATSSSDVDKLKK 231
L L +DEADLLLSYG++DDL A+ V G Q LMSAT S DV+ +K
Sbjct: 197 IDLAHLAFLAIDEADLLLSYGHKDDLTRIMDPAMGFVPKLGVQGCLMSATLSEDVEGVKG 256
Query: 232 LILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTN 291
L+L NP ILTL E + Q F S SERDK L + LLKL+L++ K++IF N
Sbjct: 257 LVLRNPAILTLSEPATASSLL----TQHFTFS-SERDKFLLLFVLLKLKLIKGKSIIFVN 311
Query: 292 TIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ------- 344
I+ +R++LFLE+FGIK ++N+ELP SR H++EEFN G++ +IATD+
Sbjct: 312 DIERGYRVRLFLEQFGIKCCVVNSELPLASRYHVVEEFNRGVYQVVIATDEASLGDEEPE 371
Query: 345 -------------TKEKDQSDEGGHVDSRKSKKHPKA----KLDSEFGVVRGIDFKNVHT 387
++++++ E G R S P A K + + RGIDF + +
Sbjct: 372 DEEEESEAEEDAEEEQEEKNAEAGPSKRRASSPAPGAPGKKKKRNAGSMARGIDFTSASS 431
Query: 388 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM----------------KIFEEI 431
VINF++P Y+HR+GRT RA ++G ++S V P + ++F+ I
Sbjct: 432 VINFDLPTTTTAYLHRVGRTARAGHSGLALSFVVPKDQWGKDKSVSIKTAERDEQVFDRI 491
Query: 432 KSFV-----GDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRN 486
KS V GD + D + +E RYR ED ++VT V ++R +++R
Sbjct: 492 KSKVKAEGGGDIKEWDWGG-------RRGEIEGFRYRMEDALRAVTSKRVSDARREEVRR 544
Query: 487 EILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 531
E+LNSEKLK HF NP DL L+HD L +SHL+ VP YL+
Sbjct: 545 ELLNSEKLKQHFAANPLDLAYLRHDAPLHPGRTSSHLKHVPGYLM 589
>gi|395507002|ref|XP_003757817.1| PREDICTED: probable ATP-dependent RNA helicase DDX56 [Sarcophilus
harrisii]
Length = 492
Score = 307 bits (786), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 186/456 (40%), Positives = 272/456 (59%), Gaps = 26/456 (5%)
Query: 79 AYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLT 138
YL P H L ++ P + A LVLVPT+EL +Q + + L C V +VV ++
Sbjct: 5 CYLSP--HFLL-QTGPVIEQAVRGLVLVPTKELARQAQTMIRQLTAYCARDV--RVVDVS 59
Query: 139 SSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGY 198
+S + R L PD+V+ TP + LS + + + DSL++LV+DEADLL S+G+
Sbjct: 60 ASEDFAFQRPLLMEKPDVVVGTPS---RVLSHLLQGNLNLRDSLELLVMDEADLLFSFGF 116
Query: 199 EDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ 258
E++LK L +PR Q LMSAT + DV LK+L+LHNP L L E P +Q
Sbjct: 117 EEELKTLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE----SQLPGPDQLQ 172
Query: 259 QFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAEL 317
QF + C +E DK L + LLKL L++ K+L+F NT++ ++RL+LFLE+F I + +LN EL
Sbjct: 173 QFQVVCETEEDKFLLLYALLKLSLLRGKSLLFVNTLERSYRLRLFLEQFSIPACVLNGEL 232
Query: 318 PQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAK--LDSEFG 375
P SR HI+ +FN G +D +IATD+ G V ++ + K + D+E G
Sbjct: 233 PLRSRCHIISQFNQGFYDCVIATDEEVL--------GAPVKGKRQGQGSKGERSADTESG 284
Query: 376 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
V RGIDF NV V+NF++P + Y+HR GRT RA N G +++ V P E +EI+ +
Sbjct: 285 VARGIDFHNVTAVLNFDLPPSPEAYIHRAGRTARANNPGTALTFVLPTERPQLKEIEEAL 344
Query: 436 GDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLK 495
G + E ++ P+ + +E RYR D +SVTK A+RE+R ++++ E+L+SEKLK
Sbjct: 345 GGESAE--SMFLPYQFRMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLK 401
Query: 496 AHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 531
+FE NP+DL LL+HD+ L HL VPDYL+
Sbjct: 402 TYFEDNPRDLQLLRHDRPLHPAVVKPHLGHVPDYLV 437
>gi|154416022|ref|XP_001581034.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
gi|121915258|gb|EAY20048.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
Length = 522
Score = 307 bits (786), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 186/499 (37%), Positives = 283/499 (56%), Gaps = 60/499 (12%)
Query: 38 VHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSK 97
V+ KK +PT IQQ +IP L+GKD++A+A+TGSGKT AY++P+L L P
Sbjct: 21 VYDAAKKLWDRPTPIQQTAIPPALQGKDILAKARTGSGKTAAYIIPILIGLSRSPLP--- 77
Query: 98 LAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL------A 151
L AL+LVPTRELC+QV S+ L C+ +TS+ D+ AA A
Sbjct: 78 LNFKALILVPTRELCKQVKSQFDELAHYCR---------ITSAHLGEDVSAATQKVTLAA 128
Query: 152 GPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPR 211
PP ++I TP L+S F +++ LV+DEAD L + + D++A+ + +P
Sbjct: 129 NPPAVLIGTPA------RVSALESMDFFKNVQFLVVDEADQQLGFDHGADIEAIISKLPP 182
Query: 212 GCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLL 271
Q LMSAT +V +L KL+L+NP + DV +E +Q ++I+ +E ++ +
Sbjct: 183 TRQSFLMSATLEKNVQELTKLVLNNPVFV------DVTEEQQQSLLQHYFINVTEDNRYM 236
Query: 272 YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 331
+ TL+++ + K+ L+F N+I+ F+L LFLE+ IKS++LN++LP SR+ ILE FN
Sbjct: 237 VLYTLIQIGRLGKRILLFVNSINRGFKLCLFLERMHIKSSVLNSQLPVASRISILESFNH 296
Query: 332 GLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINF 391
G D L+A D+ G D + +EF RG+DF+N+H+V+NF
Sbjct: 297 GKVDVLVAIDE------------GDDD-----------VLAEFSAARGVDFQNLHSVVNF 333
Query: 392 EMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPL 451
++P YVHR+GRT R G +V+ V + E I +G+ D+ +AP
Sbjct: 334 DIPLKYDQYVHRVGRTARGNREGMAVTFVG-----VNENINQ-IGESLAADNQTLAPLDF 387
Query: 452 LAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHD 511
++A E RYR V +S+T+ ++E++ ++ EILN+EKLK+HFE NPKDL +LKHD
Sbjct: 388 DTKSA-EGFRYRVNSVLESITRHQIKEAQKIYIKREILNAEKLKSHFEENPKDLQILKHD 446
Query: 512 KDLSKKPPASHLRDVPDYL 530
L + LR +PDYL
Sbjct: 447 TTLIPEKVNPALRQIPDYL 465
>gi|300120597|emb|CBK20151.2| unnamed protein product [Blastocystis hominis]
Length = 568
Score = 305 bits (782), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 202/579 (34%), Positives = 311/579 (53%), Gaps = 75/579 (12%)
Query: 45 GIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALV 104
G PTL+Q+ SIPLIL GKDV+ +A+TGSGKT AY +P L +L + ++ + A++
Sbjct: 2 GYVHPTLVQEQSIPLILSGKDVLIKARTGSGKTVAYAIPTLQKLLSITNTTDGIK--AVI 59
Query: 105 LVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCM 164
LVP++ELC Q Y +L C + + + L+S A + L D+VI+TP +
Sbjct: 60 LVPSKELCVQTYECFRSLSRYCSNVINVVSLHLSS---ADQQKGYLNEYTDVVISTPKML 116
Query: 165 PKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSS 224
L L S + ++ ++DEADLLLSYGY++D+ + IP CQ +++SAT +
Sbjct: 117 LNHLK---LYSDNILKNIHTFIVDEADLLLSYGYKEDMNKVVERIPATCQNIILSATLNE 173
Query: 225 DVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQK 284
+V LK+ +LHN + L E + ++ +F+I SE K L + LL+L +++
Sbjct: 174 EVSLLKQKLLHNCVTVKLEEENTSER----NDLNEFFIEVSEEKKALLLYALLRLHILKG 229
Query: 285 KALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD--- 341
K +IF ++++ + L +FLE+F +KS +LN ELP SR +I+ +FN G++DYLIATD
Sbjct: 230 KVIIFVDSLNFGYFLSIFLERFSMKSVVLNNELPALSRNNIIHQFNRGMYDYLIATDEGL 289
Query: 342 -----------------------------DTQTKEKDQSDEGGHVDSRKSK--------- 363
D++ ++ + S+ VDS K
Sbjct: 290 AQSIPENSEKEENGGNSGTNAKEDAELLGDSENEKDEDSEIEKDVDSEIEKDDSDDFDLE 349
Query: 364 ------KHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASV 417
K + + E+ V RGIDF+NV VIN+ MP + + YVHRIGRT RA N G +
Sbjct: 350 DSSEPEKETEETQNDEYNVSRGIDFENVAAVINYSMPASVSHYVHRIGRTARAGNLGTPL 409
Query: 418 SLVSPD---EMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKI 474
S + P + +I EI+ + + PF + + +ES YR E V + +T
Sbjct: 410 SFIVPTSDKDQRILAEIQKYNPPRDGHPVPQRLPFDI---SQIESFSYRVEGVKRGITPN 466
Query: 475 AVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKK--PPASHLRDVPDYLL- 531
+R +R LR E LNS KLK HFE NP +L+LL+H LSK+ P ++LRD+PDYL+
Sbjct: 467 LIRNTRMMQLRKEALNSSKLKMHFEDNPHELELLQH--GLSKQLVRPIAYLRDIPDYLIP 524
Query: 532 DAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPL 570
DA ++ A G++ + + +RK R +DPL
Sbjct: 525 DALKPKSNP----EEAKRGHEEDEKNKEWKRK-RVADPL 558
>gi|440300993|gb|ELP93440.1| DEAD box ATP-dependent RNA helicase, putative [Entamoeba invadens
IP1]
Length = 534
Score = 304 bits (779), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 181/522 (34%), Positives = 284/522 (54%), Gaps = 44/522 (8%)
Query: 17 EEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGK 76
E + ++ K+F GLD L H +N+ G + PTLIQ IP+ LEGKD++ A+TG+GK
Sbjct: 2 ENDNLLDKSKTFANFGLDDFLSHQINRLGYKNPTLIQSQFIPIALEGKDIITEARTGTGK 61
Query: 77 TFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQ 136
T AY++P+L L S + + AL+L P+RELC QV + V +L KG + ++
Sbjct: 62 TLAYVIPILQNLLTTKSEGNYVR--ALILNPSRELCVQVKNVVD---QLLKGFYGISIIN 116
Query: 137 LTSSMPASDLRAALAGPPDIVIATPGCMPKCLS-TGVLQSKSFSDSLKILVLDEADLLLS 195
+ S + G PDIV ATP + L TG S +L ++V DE DL+++
Sbjct: 117 VASDTSMISQKGKTRGLPDIVTATPSSLLTYLKRTGTNLS-----TLDMVVYDEVDLMIA 171
Query: 196 YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK 255
YGYE D+ +S +P C+ L+SAT + DV+ +KKL + N + L + G+
Sbjct: 172 YGYEKDITQISKTLPETCKKWLLSATINDDVETIKKLTIRNAVKIRLEDEGE------KG 225
Query: 256 NVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNA 315
N+ ++ I C ++DK+L + +L+L +++ K LIF N+I AF +K+FL++F I S +LN+
Sbjct: 226 NITEYSIFCEQKDKILNLYIILRLNMIRGKVLIFVNSIQQAFFVKIFLDRFSIPSVVLNS 285
Query: 316 ELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFG 375
+ P++ R I+ +FN F LIATD+ T EK ++ +D+ + K++ F
Sbjct: 286 DFPRDIRTDIINQFNNKQFKILIATDEV-TIEKVIEEKAKDLDAEEGKEN--------FS 336
Query: 376 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
V RGIDF +V TV+NF+ P + Y HRIGRT R G +++ V E++ F EIK+
Sbjct: 337 VARGIDFVDVATVMNFDCPVSDVSYTHRIGRTARGIKKGTAITFVDKSELEQFSEIKT-- 394
Query: 436 GDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLK 495
+ ++ P L S + R D ++TK + +R +D + E +N E LK
Sbjct: 395 --KHTLKTYVVDPVIL------NSFKTRVYDAQNTITKNTCKLARIRDFKEEKMNLETLK 446
Query: 496 AHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQE 537
+ H L+ +HLRD+PDYLL +E
Sbjct: 447 NSVGSG------VSHTTQLA--AAQNHLRDIPDYLLPKNVRE 480
>gi|300176507|emb|CBK24172.2| unnamed protein product [Blastocystis hominis]
Length = 565
Score = 304 bits (778), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 203/580 (35%), Positives = 311/580 (53%), Gaps = 80/580 (13%)
Query: 45 GIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALV 104
G PTL+Q+ SIPLIL GKDV+ +A+TGSGKT AY +P L +L + ++ + A++
Sbjct: 2 GYVHPTLVQEQSIPLILSGKDVLIKARTGSGKTVAYAIPTLQKLLSITNTTDGIK--AVI 59
Query: 105 LVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCM 164
LVP++ELC Q Y +L C + + + L+S A + L D+VI+TP +
Sbjct: 60 LVPSKELCVQTYECFRSLSRYCSNVINVVSLHLSS---ADQQKGYLNEYTDVVISTPKML 116
Query: 165 PKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSS 224
L L S + ++ ++DEADLLLSYGY++D+ + IP CQ +++SAT +
Sbjct: 117 LNHLK---LYSDNILKNIHTFIVDEADLLLSYGYKEDMNKVVERIPATCQNIILSATLNE 173
Query: 225 DVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQK 284
+V LK+ +LHN + L E N+ +F+I SE K L + LL+L +++
Sbjct: 174 EVSLLKQKLLHNCVTVKLEEEN--------TNLNEFFIEVSEEKKALLLYALLRLHILKG 225
Query: 285 KALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD--- 341
K +IF ++++ + L +FLE+F +KS +LN ELP SR +I+ +FN G++DYLIATD
Sbjct: 226 KVIIFVDSLNFGYFLSIFLERFSMKSVVLNNELPALSRNNIIHQFNRGMYDYLIATDEGL 285
Query: 342 -----------------------------DTQTKEKDQSDEGGHVDSRKSK--------- 363
D++ ++ + S+ VDS K
Sbjct: 286 AQSIPENSEKEENGGNSGTNAKEDAELLGDSENEKDEDSEIEKDVDSEIEKDDSDDFDLE 345
Query: 364 ------KHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASV 417
K + + E+ V RGIDF+NV VIN+ MP + + YVHRIGRT RA N G ++
Sbjct: 346 DSSEPEKETEETQNDEYNVSRGIDFENVAAVINYSMPASVSHYVHRIGRTARAGNLGTAL 405
Query: 418 SLVSPD---EMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRY-RAEDVAKSVTK 473
S + P + +I EI+ + + PF + + +ES Y R E V + +T
Sbjct: 406 SFIVPTSDKDQRILAEIQKYNPPRDGHPVPQRLPFDI---SQIESFSYRRVEGVKRGITP 462
Query: 474 IAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKK--PPASHLRDVPDYLL 531
+R +R LR E LNS KLK HFE NP +L+LL+H LSK+ P ++LRD+PDYL+
Sbjct: 463 NLIRNTRMMQLRKEALNSSKLKMHFEDNPHELELLQH--GLSKQLVRPIAYLRDIPDYLI 520
Query: 532 -DAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPL 570
DA ++ A G++ + + +RK R +DPL
Sbjct: 521 PDALKPKSNP----EEAKRGHEEDEKNKEWKRK-RVADPL 555
>gi|355747655|gb|EHH52152.1| Putative ATP-dependent RNA helicase DDX56 [Macaca fascicularis]
Length = 475
Score = 301 bits (772), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 180/443 (40%), Positives = 258/443 (58%), Gaps = 23/443 (5%)
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
++ P + A LVLVPT+EL +Q S + L C V +V ++++ ++ RA L
Sbjct: 20 QTGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCARDV--RVANVSAAEDSASQRAML 77
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 210
PD+V+ TP + LS S DSL++LV+DEADLL S+G+E++LK+L +P
Sbjct: 78 MEKPDVVVGTPS---RILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEELKSLLCHLP 134
Query: 211 RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC-SERDK 269
R Q LMSAT + DV LK+L+LHNP L L E P +QQF + C +E DK
Sbjct: 135 RIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE----SQLPGPDQLQQFQVVCETEEDK 190
Query: 270 LLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 329
L + LLKL L++ K+L+F NT++ ++RL+LFLE+F I + +LN ELP SR HI+ +F
Sbjct: 191 FLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPLRSRCHIISQF 250
Query: 330 NAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA--KLDSEFGVVRGIDFKNVHT 387
N G +D +IATD G V ++ + PK D E GV RGIDF +V
Sbjct: 251 NQGFYDCVIATDAEVL--------GAPVKGKRRGRGPKGDKASDPEAGVARGIDFHHVSA 302
Query: 388 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA 447
V+NF++P Y+HR GRT RA N G ++ V P E +I+ + + I+
Sbjct: 303 VLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSHLGKIEELLSGENR--GPILL 360
Query: 448 PFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDL 507
P+ + +E RYR D +SVTK A+RE+R ++++ E+L+SEKLK +FE NP+DL L
Sbjct: 361 PYQFRMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQL 419
Query: 508 LKHDKDLSKKPPASHLRDVPDYL 530
L+HD L HL VPDYL
Sbjct: 420 LRHDLPLHPAVVKPHLGHVPDYL 442
>gi|172087520|ref|XP_001913302.1| ATP-dependent 61 kDa nucleolar RNA helicase-like protein
[Oikopleura dioica]
gi|42601431|gb|AAS21454.1| ATP-dependent 61 kDa nucleolar RNA helicase-like protein
[Oikopleura dioica]
gi|313228721|emb|CBY17872.1| unnamed protein product [Oikopleura dioica]
Length = 548
Score = 295 bits (755), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 208/576 (36%), Positives = 321/576 (55%), Gaps = 58/576 (10%)
Query: 17 EEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGK 76
EEE + + SF GLD R++ + G ++PT IQ+A +P+ L+GKD++A+A+TGSGK
Sbjct: 5 EEEVKVVQWNSF---GLDPRILSGIAALGWKEPTEIQEAGLPIALKGKDILAKARTGSGK 61
Query: 77 TFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQ 136
T AYL+P++ R+ + +S + AL++ PTRELC Q+ + V L C V + +
Sbjct: 62 TGAYLIPIVQRILHIASTR------ALIIGPTRELCSQIEAVVRELCVKCLDVVS--IYE 113
Query: 137 LTSSMPA-SDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLS 195
L S + +D+ A+ IVI TPG + L + L S ++ L ++VLDEADLL
Sbjct: 114 LGSEVETEADISAS------IVIGTPGRILNALKSERL---SLTE-LSVMVLDEADLLFG 163
Query: 196 YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIP- 254
+G + + + + +P Q LMSAT S V+K+KKL L NP L L D +P
Sbjct: 164 FGNDKMVTEIVSHLPGTQQSFLMSATLSEQVEKIKKLTLRNPVTLKLD------DSSLPN 217
Query: 255 -KNVQQFWISCSER-DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAI 312
+ +QQ+ I+ +E +K L IL+ LKL +V+ K+L+F + ++LKLFL++FGI S +
Sbjct: 218 AETLQQYQINLNEDFEKYLVILSFLKLRIVRGKSLVFACGTNRCYKLKLFLKQFGIPSVV 277
Query: 313 LNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDS 372
L++EL SR + +++FN G FD +IA D E + +EG H ++K +K K K
Sbjct: 278 LSSELAAASRHNAVQQFNKGKFDVMIANDQVDLDE--EIEEGEHTKAKKEEKDSKKKKSK 335
Query: 373 -------EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSL-VSPDE 424
EFGV RGIDF+NV VINF+ P +A Y+HR GRT R N G ++L + +E
Sbjct: 336 TQEEDHREFGVSRGIDFQNVSNVINFDFPTSAKQYIHRAGRTARGDNKGRVINLMIGQEE 395
Query: 425 MKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDL 484
+++ G + F + VE LR RA D +K A+R+ R ++
Sbjct: 396 RDCLDKVTEVTGIS-------VDRFKFKMEQ-VEGLRGRASDALDKCSKRAIRDGRVAEI 447
Query: 485 RNEILNSEKLK-AHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVK 543
+ ILNS+KL+ +F + DL L+HD +L K S L ++P YLL A+ + + ++
Sbjct: 448 KQAILNSKKLQEEYFTRHENDLMALRHDANLKKVSKRSDLANIPTYLLPAQIKNSLN-IE 506
Query: 544 LARAAMGNKN-------SSRRQGPRRKFRKSDPLKS 572
AR KN + +Q +K R +DPLK+
Sbjct: 507 NARLKPQTKNYHKKGLSTKEKQALLKKRRANDPLKT 542
>gi|25148203|ref|NP_740966.1| Protein C24H12.4, isoform a [Caenorhabditis elegans]
gi|351020852|emb|CCD62828.1| Protein C24H12.4, isoform a [Caenorhabditis elegans]
Length = 634
Score = 291 bits (746), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 184/571 (32%), Positives = 316/571 (55%), Gaps = 46/571 (8%)
Query: 24 EEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLP 83
E K+F + GLD R++ ++ + G +K +Q++ I L LE K+++ RA+TGSGKT A+L+P
Sbjct: 87 EHKTFADFGLDERILKSIGELGWEKANQVQESVISLALENKNIMGRARTGSGKTGAFLIP 146
Query: 84 LLHRLFNES-SPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMP 142
L+ +L ES + + P+A+++ PT+EL Q+Y ++L + L+ + L +
Sbjct: 147 LVQKLIAESKTNDGSVGPSAVIIAPTKELITQIYK---LFVKLSQALPFLQAINLCD-IN 202
Query: 143 ASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 202
+ L +V+ TPG K L L+ + + + LV+DEADLLLS+GYE+++
Sbjct: 203 EEENSVWLEDRSHVVVTTPG---KLLRMCSLRPE-YCTLVSYLVMDEADLLLSFGYEEEM 258
Query: 203 KALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWI 262
+ + +P QCL+ SAT D+ LKKL + P I GD+ + + Q+ +
Sbjct: 259 IKIRSKLPPTYQCLMTSATLKDDMTTLKKLFMTGPVITIKLTEGDLPNS---DQLTQYQL 315
Query: 263 SC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 321
+C S+ ++ ++ + KL+L+ ++++F NTID ++L L L FG+KS ILN+ +P NS
Sbjct: 316 TCGSDEERFAILVAMFKLKLIVGRSILFVNTIDRCYKLMLILRVFGLKSCILNSAMPANS 375
Query: 322 RLHILEEFNAGLFDYLIAT-----DDTQTKEK--DQSDEGGHVDSRKSKKHPKAKLDSEF 374
R H++ +FN G + +IA+ D ++ KE+ +SDE D +K KK +KLD E
Sbjct: 376 RCHVINQFNEGSYQIVIASDVSDADGSKLKEEIAGKSDEKPEKDEKKGKK--ASKLDKES 433
Query: 375 GVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 434
GV RGIDF +V V+NF+ P+ Y+HR+GRT R +N G ++S P E E+I+
Sbjct: 434 GVSRGIDFHHVSNVVNFDFPETTDAYIHRVGRTARGFNKGTALSFCIPSERAHLEQIQEE 493
Query: 435 VGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKL 494
+ ++ ++ P+ + +++ R + TK ++++R +++R E++ S L
Sbjct: 494 I--NQQMGRKVLQPYEFRIKE-LDTFLLRTREALSKCTKGVIKKARLKEIRQELMRSANL 550
Query: 495 KAHFEVNPKDLDLLK---HDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLA------ 545
+ F N ++ L++ H L PA + DV Y++ EA + + +
Sbjct: 551 QTFFAKNEREKLLMQTDCHPVMLKINSPA--IADVTSYMVP----EALRGMDFSAPGAKN 604
Query: 546 -RAAMGNKNSSRRQGPRRKFRK--SDPLKSF 573
R MG K+ RQ + KF+K DPLK+F
Sbjct: 605 RRYNMGQKH---RQKLKHKFQKKGKDPLKTF 632
>gi|67470935|ref|XP_651424.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
gi|56468157|gb|EAL46038.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
gi|449708575|gb|EMD48009.1| ATP-dependent RNA helicase dbp9, putative [Entamoeba histolytica
KU27]
Length = 551
Score = 291 bits (745), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 186/526 (35%), Positives = 295/526 (56%), Gaps = 56/526 (10%)
Query: 22 AEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYL 81
E+EK+F E LD L H L K KPT+IQ IP LEGKD++ +A+TGSGKT AY+
Sbjct: 9 VEQEKTFNEFELDDFLTHQLKKNNFIKPTIIQSQFIPFALEGKDIICQARTGSGKTLAYV 68
Query: 82 LPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSM 141
+P+L+ L + ++ ++L P+RELC Q + + +L KG + V+ + +
Sbjct: 69 IPILNNLLVSQEEQRRIR--VIILNPSRELCYQCKN---VIDQLLKGYFGISVLNVANEN 123
Query: 142 PASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDD 201
+ + PDI+ ATP + + L ++ + D ++I V DE DL+++YGYE+D
Sbjct: 124 GVISQKGKMKSIPDIITATPATLLQYLK----KTGNNLDGVEISVYDEVDLMIAYGYEND 179
Query: 202 LKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW 261
+K L+ IP+ L+SAT + D++ LK L+L + + + E ++V +V+++
Sbjct: 180 IKELNKKIPKESVKWLLSATINDDIETLKHLMLKSAVKIRIEE-----EQV---SVEEYI 231
Query: 262 ISCSER-DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 320
I+C + DK L + LLKL ++ K LIF N+I F +KLFL+ F I S +LN++LP++
Sbjct: 232 INCERKEDKALNLYVLLKLNMIHGKVLIFVNSIQKCFYVKLFLDLFSIPSVVLNSDLPRD 291
Query: 321 SRLHILEEFNAGLFDYLIATDDT-----------QTKEKDQSDEGGHVDSRKSKKHPKAK 369
R++I+E+FN F+ LIATD+T + K+K+ +E G H ++
Sbjct: 292 IRMNIIEQFNNKEFNILIATDETTIQKIIPKKLQEVKDKNNMEEVG------DHSHIISE 345
Query: 370 LDS---EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMK 426
DS + V RGIDF++V VINF+ P + Y HRIGRTGRA G +++ V ++
Sbjct: 346 GDSAQENYSVSRGIDFQDVACVINFDCPISIVSYTHRIGRTGRASKKGTAITFVLNEDKD 405
Query: 427 IFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRN 486
IK D E +D II P + V + + R D+ ++VTK A ++R +D +
Sbjct: 406 YITSIKK---DHEIKDF-IIEP------SVVGAFKTRVYDMQRNVTKNACNDARIKDYKK 455
Query: 487 EILNSEKLKAHF-EVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 531
E+ N E+LK ++N +KH L + A HL+D+PDYLL
Sbjct: 456 EVGNVEELKKSVGKLN------IKHTAALVDQ-RAQHLKDIPDYLL 494
>gi|170578156|ref|XP_001894291.1| DEAD/DEAH box helicase family protein [Brugia malayi]
gi|158599187|gb|EDP36872.1| DEAD/DEAH box helicase family protein [Brugia malayi]
Length = 599
Score = 291 bits (744), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 180/523 (34%), Positives = 288/523 (55%), Gaps = 50/523 (9%)
Query: 20 AEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFA 79
+ E +F++ GLD +L+ + + G ++PTLIQ IP E K+++ARA+TGSGKT A
Sbjct: 67 TDVESVMTFKDFGLDEQLLKVIGEFGWERPTLIQSRMIPTAFENKNILARARTGSGKTAA 126
Query: 80 YLLPLLHRLFN---ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQ 136
++LPL+ ++ SS P A+ +VP++EL +Q YS + L E + L +
Sbjct: 127 FMLPLVQKVLQLKCNSSSNGDAGPFAVFIVPSKELAKQTYSLLCKLTEKFPFLMSLNFAE 186
Query: 137 LTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSY 196
L + L PD V++TPG + L + +S+K +VLDEADLLLS+
Sbjct: 187 LNVNTDD----GWLLKKPDFVVSTPGRLLHALK----KYGKPCESVKHVVLDEADLLLSF 238
Query: 197 GYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN 256
GY ++++ + P Q + SAT + +V+ LK+L + P +L + G + K
Sbjct: 239 GYAEEMRLIKNFFPAHHQTIFTSATMTENVEALKELYVTGPIVLMKLKEGQLPSS---KQ 295
Query: 257 VQQFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNA 315
+ Q+ ISC +E ++ L LLKL+L+ K++IF D ++L LFL+ F I+S ILNA
Sbjct: 296 LSQYHISCQNEEERFAIFLALLKLKLIVGKSIIFVRDTDRCYQLGLFLQAFNIRSCILNA 355
Query: 316 ELPQNSRLHILEEFNAGLFDYLIATD------DTQTKEKDQSDEGGHVDSRKSKKHPKAK 369
++P NSR H++E+FN G + Y+IA+D ++Q KD+ DE + KK +
Sbjct: 356 QMPMNSRCHVVEQFNEGRYSYVIASDINDVSGESQAVMKDEDDEDISKKKKMQKKK-RKH 414
Query: 370 LDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFE 429
+D E G+ RGIDF +V VINF+ P + Y+HR+G + N ++P E++I +
Sbjct: 415 IDKESGISRGIDFHHVANVINFDFPTSLNSYIHRVGSSKEEINAQLGHRAITPYEVRI-K 473
Query: 430 EIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEIL 489
E++SFV R +V + TK A+RE+R ++R EIL
Sbjct: 474 ELESFV--------------------------LRTREVLAACTKTAIREARLAEIRAEIL 507
Query: 490 NSEKLKAHFEVNPKDLDLLKHDKDL-SKKPPASHLRDVPDYLL 531
S++L+A+F NP++ L+HDK L S + + DVPDY++
Sbjct: 508 RSKRLEAYFAKNPRERAALEHDKKLFSVNLHSPAIGDVPDYMV 550
>gi|345806339|ref|XP_850575.2| PREDICTED: probable ATP-dependent RNA helicase DDX56 [Canis lupus
familiaris]
Length = 521
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 172/431 (39%), Positives = 250/431 (58%), Gaps = 19/431 (4%)
Query: 102 ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATP 161
LVLVPT+EL +Q S + L C + +V ++++ ++ RA L PDIV+ TP
Sbjct: 61 GLVLVPTKELARQARSMIQQLASYCARDI--RVADVSAAEDSASQRAVLMEKPDIVVGTP 118
Query: 162 GCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSAT 221
+ L+ S DSL++LVLDEADLL S+G+E++LK L +PR Q LMSAT
Sbjct: 119 S---RILNHLQQDSLVLRDSLELLVLDEADLLFSFGFEEELKGLLCHLPRIYQAFLMSAT 175
Query: 222 SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC-SERDKLLYILTLLKLE 280
+ DV LK+L+LHNP L L E P ++QF + C +E DK L + LLKL
Sbjct: 176 FNEDVQALKELVLHNPVTLKLQE----SQLPGPDQLRQFQVVCETEEDKFLLLYALLKLS 231
Query: 281 LVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIAT 340
L++ K L+F NT++ ++RL+LFLE+F I + +LN ELP SR HI+ +FN G +D +IAT
Sbjct: 232 LIRGKCLLFVNTLERSYRLRLFLEQFSIPACVLNGELPLCSRCHIISQFNQGFYDCVIAT 291
Query: 341 DDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGY 400
D + G P+A GV RGIDF +V +V+NF++P Y
Sbjct: 292 DAEVLGSLVKGRRRGRGSRGTRASDPEA------GVARGIDFHHVSSVLNFDLPPTPEAY 345
Query: 401 VHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESL 460
+HR GRT RA N G ++ V P E + I+ + + + ++ P+ + +E
Sbjct: 346 IHRAGRTARANNPGMVLTFVLPTEQSHLDTIEELLSGENR--APVLLPYQFRMEE-IEGF 402
Query: 461 RYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPA 520
RYR D +SVTK A+RE+R ++++ E+L+SE+LK +FE NP+DL LL+HD L
Sbjct: 403 RYRCRDAMRSVTKQAIREARLKEIKEELLHSERLKTYFEDNPRDLQLLRHDLPLHPAIVK 462
Query: 521 SHLRDVPDYLL 531
HL VPDYL+
Sbjct: 463 PHLGHVPDYLV 473
>gi|341896819|gb|EGT52754.1| hypothetical protein CAEBREN_22546 [Caenorhabditis brenneri]
Length = 637
Score = 286 bits (731), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 182/574 (31%), Positives = 315/574 (54%), Gaps = 47/574 (8%)
Query: 24 EEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLP 83
E K+F + GLD R++ ++ + G +K T +Q++ I L LE K+++ RA+TGSGKT A+L+P
Sbjct: 85 EHKTFADFGLDERILKSIGELGWEKATQVQESLISLALENKNIMGRARTGSGKTGAFLIP 144
Query: 84 LLHRLFNESSPK-SKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMP 142
L+ +L ES+ + P+A+V+ PT+EL Q+Y ++L + L+ + L +
Sbjct: 145 LVQKLITESATNDGSVGPSAVVIAPTKELITQIYK---LFVKLSQALPFLQAINL-CDIN 200
Query: 143 ASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 202
+ L +V+ TPG K L L+ + + + LV+DEADLLLS+GYE+++
Sbjct: 201 EEENSVWLEDRSHVVVTTPG---KLLRMCTLRPE-YCSLVNYLVMDEADLLLSFGYEEEM 256
Query: 203 KALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWI 262
+ + +P QC++ SAT D+ LKKL + P I GD+ + + Q+ +
Sbjct: 257 IKIRSKLPPTYQCVMTSATLKDDMTTLKKLFMTGPVITIKLTEGDLPNS---DQLTQYQL 313
Query: 263 SC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 321
+C S+ ++ ++ + KL+L+ ++++F N+ID ++L L L FG+KS ILN+ +P NS
Sbjct: 314 TCASDEERFAILVAMFKLKLIVGRSILFVNSIDRCYKLMLILRVFGLKSCILNSAMPANS 373
Query: 322 RLHILEEFNAGLFDYLIATD-----DTQTKEK------DQSDEGGHVDSRKSKKHPKAKL 370
R H++ +FN G + +IA+D ++ KE+ D +EGG ++ K KL
Sbjct: 374 RCHVINQFNEGSYQIVIASDVSDADGSKLKEQLAAVPEDTPEEGGKTAKKEKKAG-GKKL 432
Query: 371 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE 430
D E GV RGIDF +V V+NF+ P+ Y+HR+GRT R +N G ++S +P E +
Sbjct: 433 DKESGVSRGIDFHHVSNVVNFDFPETTDAYIHRVGRTARGFNKGTALSFCTPQERPYLDT 492
Query: 431 IKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILN 490
I+ + ++ ++ P+ + +++ R + TK ++++R +++R E++
Sbjct: 493 IQEEI--NQQMGRKVLQPYEFRIKE-LDTFLLRTREALAKCTKGVIKKARLKEIRQELMR 549
Query: 491 SEKLKAHFEVNPKDLDLLK---HDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARA 547
S L+ F N ++ L++ H L PA + DV Y++ EA + + +
Sbjct: 550 SANLQTFFAKNEREKLLMQTDCHPVMLKINSPA--IADVTSYMVP----EALRGMDF--S 601
Query: 548 AMGNKN------SSRRQGPRRKFRK--SDPLKSF 573
A GNKN RQ + KF+K DPLK+F
Sbjct: 602 APGNKNRRYNMGQKHRQKLKHKFQKKGKDPLKTF 635
>gi|281207672|gb|EFA81852.1| putative RNA helicase [Polysphondylium pallidum PN500]
Length = 729
Score = 286 bits (731), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 146/321 (45%), Positives = 217/321 (67%), Gaps = 13/321 (4%)
Query: 23 EEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLL 82
+++ +FE + LD+R+ ++ K G PTLIQ +IPL L+GKD++A+A+TGSGKT AY +
Sbjct: 19 DQDTTFESMCLDMRITRSIRKMGFDHPTLIQSKAIPLALQGKDILAKARTGSGKTAAYSV 78
Query: 83 PLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMP 142
P++ ++ + +K A+VLVPTRELC+QV + +++C QL VVQL
Sbjct: 79 PIVQKILMSKANNNKKCIRAVVLVPTRELCEQVKNH---FLQIC-FYTQLSVVQLAGDQS 134
Query: 143 ASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 202
S+ + L PDI+I+TP + L +G +Q +S SL++LV+DEADL+LSYGY++D+
Sbjct: 135 ESEQKGLLRDIPDIIISTPTRLVNHLKSGSIQLES---SLEMLVIDEADLVLSYGYQEDI 191
Query: 203 KALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWI 262
+ + +P+ CQ LMSAT ++ V++LKKLILH P IL L +D V N+ ++ I
Sbjct: 192 NTIKSYLPKVCQGFLMSATLTAQVEELKKLILHTPAILRL------EDTVEKSNLSEYSI 245
Query: 263 SCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 322
CS DK L + +LL+L+L+Q K L F N ++LKLFLE+F IK+A+LN+ELP NSR
Sbjct: 246 RCSNFDKFLLVFSLLRLKLMQGKILFFVNDTSSCYKLKLFLERFHIKAAVLNSELPINSR 305
Query: 323 LHILEEFNAGLFDYLIATDDT 343
HI+ +FN G+FDYLIATD++
Sbjct: 306 HHIILQFNKGIFDYLIATDES 326
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 87/192 (45%), Positives = 116/192 (60%), Gaps = 11/192 (5%)
Query: 346 KEKDQSDEGGHVDSR-----KSKKHPKAKL-DSEFGVVRGIDFKNVHTVINFEMPQNAAG 399
+EK DE DS K K K KL D+E+GV RGIDF+NV V+NF+ P+
Sbjct: 444 EEKTSDDEKEMEDSFFSSTPKVKTEKKTKLTDTEYGVSRGIDFRNVDIVVNFDFPRTVKN 503
Query: 400 YVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVES 459
YVHRIGRT R N G ++S ++PD + E++ G E + PF NA+E
Sbjct: 504 YVHRIGRTARGSNKGIALSFITPDNDDLLHEVQKKRG----ETGYNLKPFEF-KMNAIEG 558
Query: 460 LRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPP 519
RYR EDV +V+K + +R +++ EI+N+EKLK+HFE NPKDL+ LKHD L KK
Sbjct: 559 FRYRVEDVLNTVSKNEISAARKKEIELEIINNEKLKSHFEANPKDLEALKHDVPLLKKKI 618
Query: 520 ASHLRDVPDYLL 531
A +LR +PDYLL
Sbjct: 619 ARNLRIIPDYLL 630
>gi|384495993|gb|EIE86484.1| hypothetical protein RO3G_11195 [Rhizopus delemar RA 99-880]
Length = 454
Score = 285 bits (728), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 163/416 (39%), Positives = 247/416 (59%), Gaps = 38/416 (9%)
Query: 141 MPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYED 200
M A R L PDI+++TP K L+ Q+ S+SL+ LV+DEADL+LS+GYED
Sbjct: 1 MSAQLQRPLLLEKPDIIVSTPS---KTLTHLEAQNMVLSESLENLVIDEADLVLSFGYED 57
Query: 201 DLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF 260
D++ + + +P+ Q LMSAT + ++++L L+L P IL L D ++E ++ Q+
Sbjct: 58 DVRKILSFLPKIYQSFLMSATFTKEIEELTALVLRKPAILALE---DSEEEA--SSLTQY 112
Query: 261 WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 320
+ CSE +K L+ ++KL L++ K L+F N ID ++LKLFLE+F IKS +LN+ELP N
Sbjct: 113 VVQCSEFEKFLFTFVIIKLRLIKGKILLFVNDIDRCYKLKLFLEQFSIKSCVLNSELPLN 172
Query: 321 SRLHILEEFNAGLFDYLIATDDTQTK---------EKDQSDEGGHVDSRKSKKHPKAKLD 371
SR HI+EEFN G++DYLIATD+++ K E+++ + ++K K K K D
Sbjct: 173 SRYHIVEEFNRGIYDYLIATDESELKGEQDSEDEDEEEKKEGEEEEKAKKKKNKQKVKKD 232
Query: 372 SEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM------ 425
E+GV RG+DF+ V V+NF+ P ++ Y HRIGRT R N G S+S V E
Sbjct: 233 KEYGVSRGVDFQGVAAVVNFDFPTSSKAYTHRIGRTARGGNQGMSLSFVVTKEFVEDNKE 292
Query: 426 ----------KIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIA 475
++E +K + + + +N V +YR +D K+V K+A
Sbjct: 293 VSRGRGVHDEAVYERVKK----QQEAKKAELKSYSFEKKN-VAGFKYRVQDALKAVNKVA 347
Query: 476 VRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 531
++E+R ++++ EILNSEKLKAHFE PKDL+ L+HD L H++ +P YL+
Sbjct: 348 IKEARIKEIKREILNSEKLKAHFEDKPKDLEFLRHDVALQPAKVQEHMKHIPSYLM 403
>gi|167382435|ref|XP_001736101.1| ATP-dependent RNA helicase dbp9 [Entamoeba dispar SAW760]
gi|165901540|gb|EDR27618.1| ATP-dependent RNA helicase dbp9, putative [Entamoeba dispar SAW760]
Length = 552
Score = 284 bits (727), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 197/571 (34%), Positives = 309/571 (54%), Gaps = 61/571 (10%)
Query: 22 AEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYL 81
E+EK+F E LD L H L K KPT+IQ IP LEGKD++ +A+TGSGKT AY+
Sbjct: 9 VEQEKTFNEFELDDFLTHQLKKNNFVKPTIIQSQFIPFALEGKDIICQARTGSGKTLAYV 68
Query: 82 LPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSM 141
+P+L+ L + ++ ++L P+RELC Q + + +L KG + V+ + +
Sbjct: 69 IPILNNLLVSQEEQRRIR--VVILNPSRELCYQCKN---VIDQLLKGYFGISVLNVANEN 123
Query: 142 PASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDD 201
+ + PDI+ ATP + + L ++ + D ++I V DE DL+++YGYE+D
Sbjct: 124 GVISQKGKMKSIPDIITATPATLLQYLK----KTGNNLDGVEISVYDEVDLMIAYGYEND 179
Query: 202 LKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW 261
+K L+ IP+ L+SAT + D++ LK L+L + + + E +V+++
Sbjct: 180 IKELNKKIPKESVKWLLSATINDDIETLKHLMLKSAVKIRIEEEE-------QVSVEEYI 232
Query: 262 ISCSER-DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 320
I+C + DK L + LLKL ++ K LIF N+I F +KLFL+ F I S +LN++LP+
Sbjct: 233 INCERKEDKALNLYVLLKLNMIHGKVLIFVNSIQKCFYVKLFLDLFSIPSVVLNSDLPRE 292
Query: 321 SRLHILEEFNAGLFDYLIATDDT-----------QTKEKDQSDEGGHVDSRKSKKHPKAK 369
R++I+E+FN F+ LIATD+T + K+K+ +E G H ++
Sbjct: 293 IRMNIIEQFNNKEFNILIATDETTIQKVIPKKLQEVKDKNIMEEDG------DHSHIISE 346
Query: 370 LDS---EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMK 426
DS + V RGIDF++V VINF+ P + Y HRIGRTGRA G +++ V ++
Sbjct: 347 GDSAQENYSVSRGIDFQDVACVINFDCPISIVSYTHRIGRTGRASKKGTAITFVLNEDKD 406
Query: 427 IFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRN 486
IK D E +D II P + V + + R D+ ++VTK A ++R +D +
Sbjct: 407 YITSIKK---DHEIKDF-IIEP------SVVGAFKTRVYDMQRNVTKNACNDARIKDYKK 456
Query: 487 EILNSEKLKAHF-EVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLA 545
E+ N E+LK ++N +KH L + A HL+D+PDYLL + K V L
Sbjct: 457 EVGNVEELKKSVGKLN------IKHTAALVDQ-RAQHLKDIPDYLLPDNVVQRLKGV-LD 508
Query: 546 RAAMGNKNSSRRQGPR----RKFRKSDPLKS 572
R ++R P+ +K R+S P KS
Sbjct: 509 RTNEYEAKETKR-NPKSKSSKKRRESKPRKS 538
>gi|407038398|gb|EKE39109.1| DEAD/DEAH box helicase, putative [Entamoeba nuttalli P19]
Length = 552
Score = 284 bits (727), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 185/526 (35%), Positives = 292/526 (55%), Gaps = 55/526 (10%)
Query: 22 AEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYL 81
E+EK+F E LD L H L K KPT+IQ IP LEGKD++ +A+TGSGKT AY+
Sbjct: 9 VEQEKTFNEFELDDFLTHQLKKNNFIKPTIIQSQFIPFALEGKDIICQARTGSGKTLAYV 68
Query: 82 LPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSM 141
+P+L+ L + ++ ++L P+RELC Q + + +L KG + V+ + +
Sbjct: 69 IPILNNLLVSQEEQRRIR--VIILNPSRELCYQCKN---VIDQLLKGYFGISVLNVANEN 123
Query: 142 PASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDD 201
+ + PDI+ ATP + + L ++ + D ++I V DE DL+++YGYE+D
Sbjct: 124 GVISQKGKMKSIPDIITATPATLLQYLK----KTGNNLDGVEISVYDEVDLMIAYGYEND 179
Query: 202 LKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW 261
+K L+ IP+ L+SAT + D++ LK L+L + + + E +V+++
Sbjct: 180 IKELNKKIPKESVKWLLSATINDDIETLKHLMLKSAVKIRIEEEE-------QVSVEEYI 232
Query: 262 ISCSER-DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 320
I+C + DK L + LLKL ++ K LIF N+I F +KLFL+ F I S +LN++LP++
Sbjct: 233 INCERKEDKALNLYVLLKLNMIHGKVLIFVNSIQKCFYVKLFLDLFSIPSVVLNSDLPRD 292
Query: 321 SRLHILEEFNAGLFDYLIATDDT-----------QTKEKDQSDEGGHVDSRKSKKHPKAK 369
R++I+E+FN F+ LIATD+T + K+K+ +E G H ++
Sbjct: 293 IRMNIIEQFNNKEFNILIATDETTIQKIIPKKLQEVKDKNNMEEVG------DHSHIISE 346
Query: 370 LDS---EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMK 426
DS + V RGIDF++V VINF+ P + Y HRIGRTGRA G +++ V ++
Sbjct: 347 GDSAQENYSVSRGIDFQDVACVINFDCPISIVSYTHRIGRTGRASKKGTAITFVLNEDKD 406
Query: 427 IFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRN 486
IK D E +D II P + V + + R D+ ++VTK A ++R +D +
Sbjct: 407 YITSIKK---DHEIKDF-IIEP------SVVGAFKTRVYDMQRNVTKNACNDARIKDYKK 456
Query: 487 EILNSEKLKAHF-EVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 531
E+ N E+LK ++N +KH L + A HL+D+PDYLL
Sbjct: 457 EVGNVEELKKSVGKLN------IKHTAALVDQ-RAQHLKDIPDYLL 495
>gi|323455805|gb|EGB11673.1| hypothetical protein AURANDRAFT_52462 [Aureococcus anophagefferens]
Length = 761
Score = 284 bits (726), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 203/598 (33%), Positives = 310/598 (51%), Gaps = 66/598 (11%)
Query: 29 EELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRL 88
E + LD RL A+ + +P+LIQQA++P+ G+D++ RA+TGSGKT Y LP+L +
Sbjct: 117 ENVRLDRRLARAVAELNWARPSLIQQAALPVAATGRDLLIRARTGSGKTACYALPILDLI 176
Query: 89 FNESSP-----KSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPA 143
+ + + A+VLVPTREL Q +++ L C+ V +V L A
Sbjct: 177 LKKKAETLEGRREYGGVLAVVLVPTRELVAQAATQLRELAAYCRDDVA--IVALRGESAA 234
Query: 144 SDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD--------SLKILVLDEADLLLS 195
D +G D+V TP + V ++++ D + + +DEADL+LS
Sbjct: 235 EDAAQVRSGNADVVAGTPAAV----RDAVERARAHDDHPLLRLRRTCRAYAVDEADLVLS 290
Query: 196 YGYEDDLKALS-------------AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL 242
+GY++D+ ++ A P+G L+SAT DV KLKKL L + L
Sbjct: 291 FGYDEDVAFVARELGVAGDDAADRADRPQG---FLLSATLGDDVLKLKKLALKGAATVKL 347
Query: 243 PEV-----GDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAF 297
E GD DE + Q+++ ++ DK L +LKL L++ + ++F N++D +
Sbjct: 348 DERAGVFGGDRDDEA---QLAQYYVPVAKGDKYLVTYVMLKLALLEGRGVLFVNSVDACY 404
Query: 298 RLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHV 357
+LKLFL+ F I+ +LNAELP SRLH +E +N GL+D L+ATD + E + E
Sbjct: 405 KLKLFLDLFSIRCLVLNAELPLASRLHAIESYNRGLYDILVATD--ASVEATDAPEKRKR 462
Query: 358 DSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASV 417
+K+ K PK D+ FGV RGIDF++V V+N ++P Y HR+GRT RA G ++
Sbjct: 463 GQKKATKAPKKSKDA-FGVARGIDFRDVKWVLNVDVPATPESYTHRVGRTARAGARGTAL 521
Query: 418 SLVSPDEMKIFE-----EIKSFVGDDENEDSNIIAPFPLLAQ-----NAVESLRYRAEDV 467
SLV P ++ + + + DE A P A+ A E RYR DV
Sbjct: 522 SLVPPMKLASLAAGGACAVLAALDVDEAAALGAGAHVPQPARLAFDGGACEPFRYRVSDV 581
Query: 468 AKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDK---DLSKKPPASHLR 524
+ VT +VR++RA +LR E+L+SE LKAHF NP DL +L+ K + + A+ ++
Sbjct: 582 QRGVTAASVRDARAAELRKEMLDSEALKAHFSDNPDDLAVLQQTKAEHHVRRDLLAATIK 641
Query: 525 DVPDYLL-------DAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSFSA 575
VP YL+ AK +++ K K + G K + +DPL+SF A
Sbjct: 642 TVPSYLVPKALAAAGAKPKQSFKRKKRSEKRSGAKRQRGDGADETRRTDNDPLQSFDA 699
>gi|146197830|dbj|BAF57628.1| DEAD/H box protein [Dugesia japonica]
Length = 529
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 189/564 (33%), Positives = 287/564 (50%), Gaps = 53/564 (9%)
Query: 30 ELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLF 89
E LD RL+ L++ +PT IQ IP ILE K+++ A+TGSGKT AY++P + L
Sbjct: 5 EFHLDQRLLKTLSELNWDRPTDIQSGVIPHILEKKNLIISARTGSGKTAAYMIPTIQELL 64
Query: 90 NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAA 149
S+ + L+L P++ELC Q Y + L + + L V ++S L+
Sbjct: 65 VSKIGDSEQKVSVLILCPSKELCAQSYKNLTMLTKY----LDLSSVNISSQKKHDILKPI 120
Query: 150 LAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVI 209
L PD +I TP + + G++ K LK L++DEADL+ +GY +D++ LS I
Sbjct: 121 LLKRPDYIIGTPSQVLGYVKEGLINIKE----LKFLIIDEADLMSGFGYREDIEKLSNDI 176
Query: 210 -PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ--QFWISCSE 266
Q L++SAT DV L+ + + L L E++P Q Q C E
Sbjct: 177 NAANSQILMLSATLGEDVKALRHIFKVRWFRLELNN-----SEMLPSTEQLTQLVKKCDE 231
Query: 267 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
+K ++ + KL L++ K +IF NT+D +R+++ + F I S +LNAE+P SR HI+
Sbjct: 232 EEKFNILVGMFKLNLIKGKTIIFANTVDKCYRMRIVFDTFHISSVVLNAEMPVASRNHIV 291
Query: 327 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL--DSEFGVVRGIDFKN 384
EFN G +D L+A SDE +D+ + K K KL D EF + RGIDF
Sbjct: 292 HEFNVGRYDLLLA-----------SDEDNLIDNAE-KDFTKKKLNKDEEFKISRGIDFNQ 339
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSN 444
V VIN + P YVHR+GR R G +V VS + F I + + D N S
Sbjct: 340 VSNVINMDCPSTVESYVHRVGRAARVNQKGQAVLFVSIKDNDKFTAIDNMLMKDNNGVS- 398
Query: 445 IIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKD 504
+ PF ++N E YR + T+ ++R++R D+ EI NS L+A+F+ NP +
Sbjct: 399 VFKPFK-CSRNIYEGFVYRITEALSKCTRASIRQARLLDIHKEIENSHALQAYFQENPTE 457
Query: 505 LDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPR--- 561
+ +L+H+K + K+ H+++VP YL+ QE K KNS +R+ R
Sbjct: 458 MKVLQHNKPVIKE-RNQHMKNVPSYLIPPILQEKLK-----------KNSKKRRRTRFKE 505
Query: 562 ------RKFRKSDPLKSFSAEPTK 579
K + S+PL SF + K
Sbjct: 506 GTKPSINKKKSSNPLFSFKKKAKK 529
>gi|119581497|gb|EAW61093.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56, isoform CRA_a [Homo
sapiens]
Length = 375
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 170/391 (43%), Positives = 235/391 (60%), Gaps = 22/391 (5%)
Query: 21 EAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAY 80
E E FE +GLD RL+ A+ G +PTLIQ+ +IPL LEGKD++ARA+TGSGKT AY
Sbjct: 2 EDSEALGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAY 61
Query: 81 LLPLLHRLFNE--SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLT 138
+P+L L + + P + A LVLVPT+EL +Q S + L C V +V ++
Sbjct: 62 AIPMLQLLLHRKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCARDV--RVANVS 119
Query: 139 SSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGY 198
++ + RA L PD+V+ TP + LS S DSL++LV+DEADLL S+G+
Sbjct: 120 AAEDSVSQRAVLMEKPDVVVGTPS---RILSHLQQDSLKLRDSLELLVVDEADLLFSFGF 176
Query: 199 EDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ 258
E++LK+L +PR Q LMSAT + DV LK+LILHNP L L E P +Q
Sbjct: 177 EEELKSLLCHLPRIYQAFLMSATFNEDVQALKELILHNPVTLKLQE----SQLPGPDQLQ 232
Query: 259 QFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAEL 317
QF + C +E DK L + LLKL L++ K+L+F NT++ ++RL+LFLE+F I + +LN EL
Sbjct: 233 QFQVVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGEL 292
Query: 318 PQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA--KLDSEFG 375
P SR HI+ +FN G +D +IATD G V ++ + PK D E G
Sbjct: 293 PLRSRCHIISQFNQGFYDCVIATDAEVL--------GAPVKGKRRGRGPKGDKASDPEAG 344
Query: 376 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGR 406
V RGIDF +V V+NF++P Y+HR GR
Sbjct: 345 VARGIDFHHVSAVLNFDLPPTPEAYIHRAGR 375
>gi|308456622|ref|XP_003090738.1| hypothetical protein CRE_04391 [Caenorhabditis remanei]
gi|308260774|gb|EFP04727.1| hypothetical protein CRE_04391 [Caenorhabditis remanei]
Length = 633
Score = 281 bits (720), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 182/568 (32%), Positives = 313/568 (55%), Gaps = 40/568 (7%)
Query: 24 EEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLP 83
E K+F + GLD R++ ++ + G + T +Q++ I L LE K+++ RA+TGSGKT A+L+P
Sbjct: 88 EHKTFADFGLDERILKSIGELGWENATQVQESLISLALENKNIMGRARTGSGKTGAFLIP 147
Query: 84 LLHRLFNES-SPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMP 142
L+ +L ES + + P+A+V+ PT+EL Q+Y ++L + L+ + L +
Sbjct: 148 LVQKLIAESKTNDGSIGPSAVVIAPTKELVTQIYK---LFVKLAQALPFLQAINL-CDIN 203
Query: 143 ASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 202
+ L +VI+TPG + + S + ++ LV+DEADLLLS+GYE+++
Sbjct: 204 EEENSVWLEDHSHVVISTPGKLLRMCSI----RPEYCSLVQYLVMDEADLLLSFGYEEEM 259
Query: 203 KALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWI 262
+ + +P QC++ SAT D+ LKKL + P I GD+ + + Q+ +
Sbjct: 260 IKIRSKLPSTYQCVMTSATLKDDMTTLKKLFMTGPVITIKLTEGDLPNS---DQLTQYQL 316
Query: 263 SC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 321
+C S+ ++ ++ + KL+L+ ++++F N+ID ++L L L FG+KS ILN+ +P NS
Sbjct: 317 TCGSDEERFAILVAMYKLKLIVGRSILFVNSIDRCYKLMLILRVFGLKSCILNSAMPANS 376
Query: 322 RLHILEEFNAGLFDYLIATDDTQ---TKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVR 378
R H++ +FN G + +IA+D + +K KD EG +KSKK KLD E GV R
Sbjct: 377 RCHVINQFNEGAYQIVIASDVSDADGSKLKDLEPEGTEQKEKKSKKSGSKKLDKESGVSR 436
Query: 379 GIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD 438
GIDF +V V+NF+ P+ Y+HR+GRT R +N G ++S +P E E I+ + +
Sbjct: 437 GIDFHHVSNVVNFDFPETTDAYIHRVGRTARGFNKGTALSFCTPQERPHLETIQDEI--N 494
Query: 439 ENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHF 498
++ P+ + +++ R + TK ++++R +++R E++ S L+ F
Sbjct: 495 AQMGRKVLQPYEFRIKE-LDTFLLRTREALAKCTKGVIKKARLKEIRQEMMRSANLQTFF 553
Query: 499 EVNPKDLDLLK---HDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLA-------RAA 548
N ++ L++ H L PA + DV Y++ EA + + + R
Sbjct: 554 AKNEREKLLMQTDCHPVMLKINSPA--IADVTPYMVP----EALRGMDFSAPGNKHRRYN 607
Query: 549 MGNKNSSRRQGPRRKFRK--SDPLKSFS 574
MG K+ RQ + KF+K DPLK+F+
Sbjct: 608 MGQKH---RQKLKHKFQKKGKDPLKTFT 632
>gi|294898598|ref|XP_002776294.1| ATP-dependent RNA helicase DBP9, putative [Perkinsus marinus ATCC
50983]
gi|239883204|gb|EER08110.1| ATP-dependent RNA helicase DBP9, putative [Perkinsus marinus ATCC
50983]
Length = 631
Score = 281 bits (718), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 212/578 (36%), Positives = 315/578 (54%), Gaps = 68/578 (11%)
Query: 29 EELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRL 88
E+ G+D R+ ALNK ++P L+Q +IP +LE KDV+ +A+TG GKT AY++PLL +L
Sbjct: 38 EKHGIDRRISKALNKLQFERPALVQSRAIPPVLESKDVLVKARTGCGKTIAYVVPLLQQL 97
Query: 89 FNESSPK--SKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
++PK S+ A VLVPT+ELC QV V +L+ V+
Sbjct: 98 L-ATAPKSGSRHPLTAFVLVPTKELCVQVNQVVNSLLHYA-----FDVISCDMHTTTHPY 151
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQS-KSFSDSLKILVLDEADLLLSYGYEDDLKAL 205
R AL P I++ TP CLS VL+S K ++K LV+DEADL+LSYGYE+D+K +
Sbjct: 152 RKAL---PSILVCTPAA---CLS--VLKSRKELGPTIKHLVIDEADLMLSYGYEEDIKGV 203
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEV--GDVKDEVIPKNVQQFWIS 263
+ R QC+L+SAT + DV+ LK L LH P I+ L E G E +++QF++
Sbjct: 204 LGYLDR-YQCMLLSATLNDDVETLKGLCLHKPVIVKLEEAESGAAAGE---GHLKQFYLP 259
Query: 264 CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS-AILNAELPQNSR 322
+K L + LLKL+L+ K LIF ID A+R KL L+KF + S A+LN ELP SR
Sbjct: 260 LRPDEKYLVVYGLLKLKLLVGKTLIFAKDIDSAYRYKLLLDKFSMGSVAVLNYELPFLSR 319
Query: 323 LHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDF 382
I+E FN D LIAT +Q+ G + E + RG+DF
Sbjct: 320 NQIIESFNMNAIDVLIAT--------NQAVSGSGAE--------------EQAIHRGLDF 357
Query: 383 KNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENED 442
+V V+N +MP A YVHR+GRT R G +++LV D+++ ++E+ + E E+
Sbjct: 358 VDVKAVLNADMPDTAREYVHRVGRTARGGANGTALTLV--DDVEQWQEVLA-----EIEE 410
Query: 443 SNI-IAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVN 501
+ + I P L + + SL+YR EDV+ S+TK AV R +L E+L+S+K+K + N
Sbjct: 411 AGVEIEALP-LDISELNSLKYRVEDVSHSITKKAVASLRQSELMREVLHSDKMKQQLQEN 469
Query: 502 PKDLDLLK-----HDKDLSKKPPASHLRDVPDYLLDA-------KTQEACKMVKLARAAM 549
+D L+ ++ ++ L+D+P+YL+ + +A VKLA
Sbjct: 470 TEDAKALRKSLRQNNAKVAGSTIKKSLKDLPEYLVPQSFLNSLDEDGDASNPVKLAALGK 529
Query: 550 GNKNSSRRQGPRRKFRKSDPLKSFSAEPTKRAGKGRMK 587
GN ++ ++ SDPLK+F + KR G M+
Sbjct: 530 GNSTDGKKGKGMKRKLSSDPLKTFEST-RKRLLTGSMR 566
>gi|66813958|ref|XP_641158.1| hypothetical protein DDB_G0280407 [Dictyostelium discoideum AX4]
gi|74997096|sp|Q54VF1.1|DDX56_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx56; AltName:
Full=DEAD box protein 56
gi|60469187|gb|EAL67182.1| hypothetical protein DDB_G0280407 [Dictyostelium discoideum AX4]
Length = 685
Score = 281 bits (718), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 142/329 (43%), Positives = 216/329 (65%), Gaps = 10/329 (3%)
Query: 25 EKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPL 84
E +FE +GLD R++ AL K G Q P+L+Q SIPL L+GKD++A+A+TGSGKT AY +P+
Sbjct: 22 ECTFESMGLDNRILRALKKMGFQNPSLVQSKSIPLSLQGKDILAKARTGSGKTAAYSIPI 81
Query: 85 LHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
+ ++ + A+VLVPTRELC+QV + + C+ V VVQL +
Sbjct: 82 IQKVLMAKEKSNIKGVKAVVLVPTRELCEQVKNHFNQVSYYCQQLVS--VVQLGNDKTLD 139
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
+ + L PD++++TP + + L +Q +S +L ILV+DEADL+L+YG+++D+
Sbjct: 140 EQKGLLRDIPDVIVSTPTRLVQHLENKTIQLQS---TLDILVIDEADLVLNYGHQNDINI 196
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264
+ + +P+ CQC LMSAT + +V++LKKL+LH P +L L E D+ I N+ ++ I C
Sbjct: 197 IKSFLPKVCQCFLMSATLTKEVEELKKLVLHTPAVLKLEE-----DKAIQTNLSEYSIKC 251
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
+E DK L + +LL+L L+Q K L F N + ++LKLF E+F IK A+LN+ELP NSR
Sbjct: 252 AEVDKFLLVFSLLRLRLMQGKILFFVNDTNNCYKLKLFFERFHIKCAVLNSELPINSRHD 311
Query: 325 ILEEFNAGLFDYLIATDDTQTKEKDQSDE 353
I+ +FN GLFDYLIATD++ + ++ +E
Sbjct: 312 IILQFNKGLFDYLIATDESFKSDSNKKEE 340
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 103/164 (62%), Gaps = 5/164 (3%)
Query: 368 AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 427
+K D E+GV RGIDF+NV V+NF+ P+ Y+HRIGRT R N G ++S V+ ++
Sbjct: 419 SKGDKEYGVARGIDFRNVDIVVNFDFPRTIKNYIHRIGRTARGTNKGIALSFVTYHNEEL 478
Query: 428 FEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNE 487
+++ GD + PF NA+E RYR EDV +++ A++E++ +L+ E
Sbjct: 479 LKKVSKTRGDAGYN----LKPFEF-KMNAIEGFRYRVEDVLRTIGIRAIKEAKKTELKQE 533
Query: 488 ILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 531
+LN+EKLK+HF NP+DL LKHD L KK HLR VP+YLL
Sbjct: 534 LLNNEKLKSHFSENPQDLLALKHDTTLIKKQVPLHLRVVPEYLL 577
>gi|21064833|gb|AAM29646.1| RH74035p [Drosophila melanogaster]
Length = 388
Score = 280 bits (716), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 162/395 (41%), Positives = 237/395 (60%), Gaps = 22/395 (5%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F EL LD R++ A+ + G Q+PTLIQ +IPL+LEGKDVV RA+TGSGKT Y LPL+ +
Sbjct: 11 FHELELDQRILKAVAQLGWQQPTLIQSTAIPLLLEGKDVVVRARTGSGKTATYALPLIQK 70
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+ N S+ +A+VL PT+ELC+Q + L+E C V++ + +S+ + R
Sbjct: 71 ILNSKLNASEQYVSAVVLAPTKELCRQSRKVIEQLVESCGKVVRVADIADSSNDTVTQ-R 129
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD--SLKILVLDEADLLLSYGYEDDLKAL 205
AL+ PDIV+ATP + G S D ++ LV+DEADL+ +YGYE D K L
Sbjct: 130 HALSESPDIVVATPANLLAYAEAG-----SVVDLKHVETLVVDEADLVFAYGYEKDFKRL 184
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-VQQFWISC 264
+P Q +L+SAT + DV ++K L L+NP L L E E++P++ + I
Sbjct: 185 IKHLPPIYQAVLVSATLTDDVARMKGLCLNNPVTLKLEE-----PELVPQDQLSHQRILA 239
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
E DK + LLKL L++ K++IF N+ID ++++LFLE+FGI++ +LN+ELP N R+H
Sbjct: 240 EENDKPAILYALLKLRLIRGKSIIFVNSIDRCYKVRLFLEQFGIRACVLNSELPANIRIH 299
Query: 325 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 384
+ +FN G +D +IA+D E GG S ++K P++ D E RGIDF+
Sbjct: 300 TISQFNKGTYDIIIASD-----EHHMEKPGG--KSATNRKSPRSG-DMESSASRGIDFQC 351
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSL 419
V+ VINF+ P++ Y+HR GRT R S L
Sbjct: 352 VNNVINFDFPRDVTSYIHRAGRTARGNKRAPSCPL 386
>gi|268534132|ref|XP_002632196.1| Hypothetical protein CBG07062 [Caenorhabditis briggsae]
Length = 634
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 190/580 (32%), Positives = 323/580 (55%), Gaps = 44/580 (7%)
Query: 14 QAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTG 73
Q +E + E E K+F + GLD R++ ++ + G +K T +Q++ I L LE K+++ RA+TG
Sbjct: 77 QVDEMDFEPEH-KTFADFGLDERILKSIGELGWEKCTQVQESLISLALENKNIMGRARTG 135
Query: 74 SGKTFAYLLPLLHRLFNES-SPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQL 132
SGKT A+L+PL+ +L ES + + P+A+V+ PT+EL QVY+ ++L + L
Sbjct: 136 SGKTGAFLIPLVQKLIAESKTNDGSVGPSAVVIAPTKELITQVYT---LFVKLSQALPFL 192
Query: 133 KVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADL 192
+ + L + + L +V+ TPG K L L+ + + + LV+DEADL
Sbjct: 193 QAINL-CDINEEESSVWLEDRSHVVVTTPG---KLLRMCGLRPE-YCSIVSYLVMDEADL 247
Query: 193 LLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEV 252
LLS+GYE+++ + + +P QC+L SAT D+ LKKL + P I GD+ +
Sbjct: 248 LLSFGYEEEMIKIRSKLPPTYQCVLTSATLKDDMTTLKKLFMTGPVITIKLTEGDLPNS- 306
Query: 253 IPKNVQQFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 311
+ Q+ ++C S+ ++ ++ + KL+L+ ++++F N+ID ++L L L FG+KS
Sbjct: 307 --DQLTQYQLTCGSDEERFAILVAMFKLKLIVGRSILFVNSIDRCYKLMLILRVFGLKSC 364
Query: 312 ILNAELPQNSRLHILEEFNAGLFDYLIATD-----DTQTKE--KDQSDEGGHVDSRKSKK 364
ILN+ +P NSR H++ +FN G + +IA+D ++ KE KD ++E K +K
Sbjct: 365 ILNSAMPANSRCHVINQFNEGSYQIVIASDVFDADGSKLKEELKDATEESTEGKKDKKEK 424
Query: 365 HPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE 424
KLD E GV RGIDF +V V+NF+ P+ Y+HR+GRT R +N G ++S +P E
Sbjct: 425 KGGKKLDKESGVSRGIDFHHVSNVVNFDFPETTDAYIHRVGRTARGFNKGTALSFCTPQE 484
Query: 425 MKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDL 484
+ E I+ + ++ ++ P+ + +++ R + A S TK ++++R +++
Sbjct: 485 RQHLETIQEEI--NQQMGRKVLQPYEFRIKE-LDTFLLRTRE-ALSKTKGVIKKARLKEI 540
Query: 485 RNEILNSEKLKAHFEVNPKDLDLLK---HDKDLSKKPPASHLRDVPDYLLDAKTQEACKM 541
R E++ S L+ F N ++ L++ H L PA + DV Y++ EA +
Sbjct: 541 RQELMRSANLQTFFAKNEREKLLMQTDCHPVMLKINSPA--IADVTSYMVP----EALRG 594
Query: 542 VKLARAAMGNKN------SSRRQGPRRKFRK--SDPLKSF 573
+ +A GNKN RQ + KF+K DPLK+F
Sbjct: 595 MDF--SAPGNKNRRYNMGQKHRQKLKHKFQKKGKDPLKTF 632
>gi|452820880|gb|EME27917.1| ATP-dependent RNA helicase [Galdieria sulphuraria]
Length = 525
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 183/524 (34%), Positives = 283/524 (54%), Gaps = 39/524 (7%)
Query: 24 EEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLP 83
E SF+EL L+ RLV A+ + G PT +Q +P +L GKD + A TG+GKT Y +P
Sbjct: 10 EIDSFDELQLEPRLVKAIQRAGFLHPTPVQCQGLPCLLGGKDALISAPTGTGKTVCYAVP 69
Query: 84 LLHRLFNESS---PKSK-----LAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVV 135
++H+L E S P S + ALVLVPT+EL QV A +L ++ +
Sbjct: 70 IIHQLLKEESTMDPNSTSFHDGMQWEALVLVPTKELAYQV----TATFQLLNRYNSIRTL 125
Query: 136 QLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLS 195
L P+S + AL I++ TP + L G K+ LK LV+DEADLL S
Sbjct: 126 ALLQKQPSSWQKVALT---HILVTTPATLLHLLQQGTYSIKN----LKWLVVDEADLLFS 178
Query: 196 YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEV-GDV-KDEVI 253
+GYE D++ + IP Q + +SAT + + + + + DV ++E +
Sbjct: 179 FGYEQDMQKILPSIPAKVQSVFVSATLDKETYHFLRHFEDKRHAMQQIRIKHDVTQEERL 238
Query: 254 PKNVQQFWISCS-ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAI 312
+ ++ E+DK L + L+KL++++ K LIF N++D FRLKL L++F I +++
Sbjct: 239 QVLAKHHYVQVEKEQDKYLVVFALIKLQVLKGKILIFVNSVDKGFRLKLLLDQFYIHTSL 298
Query: 313 LNAELPQNSRLHILEEFNAGLFDYLIATDD----TQTKEKDQSDEGGHVDSRKSKKHPKA 368
LNAELP SRLH +E+FN G LIATD+ Q + +D K+K+
Sbjct: 299 LNAELPLLSRLHSVEQFNQGKSSILIATDEACIWNQKMKSSWKANANTLDKEKTKEQ--- 355
Query: 369 KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF 428
++EF + RG+DF+ V V+N + P + Y+HR GRT RA G ++LV+ +EM
Sbjct: 356 --ENEFDLSRGMDFQQVAVVLNLDCPYSLISYIHRAGRTARAGKAGDILTLVTSEEMPRL 413
Query: 429 EEIKSFVGDDENEDSNIIAPFPL-LAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNE 487
+ +G + + + PL + + VE RYR ED +TK ++E+RA ++R E
Sbjct: 414 QNHFEGMGLKQEQWN------PLKVKMSQVEPFRYRVEDCLYKITKNVLKEARATEIRRE 467
Query: 488 ILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 531
+LNSEK+K +F + D + LK D+ L+ + HL D+P YL+
Sbjct: 468 MLNSEKMKEYFAHHALDFEALKSDRPLNTR-TNPHLADIPSYLM 510
>gi|328874326|gb|EGG22691.1| putative RNA helicase [Dictyostelium fasciculatum]
Length = 712
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 152/364 (41%), Positives = 227/364 (62%), Gaps = 15/364 (4%)
Query: 1 MGKSKEIPSKEVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLI 60
M SK + +++ + E+ + E +FE + LD+R++ A+ K G + PTLIQ SIPL
Sbjct: 1 MDLSKTLITEKSNNSNISESLIDGETTFESMCLDMRIIKAVKKIGYEHPTLIQAKSIPLS 60
Query: 61 LEGKDVVARAKTGSGKTFAYLLPLLHRLF----NESSPKSKLAPA-ALVLVPTRELCQQV 115
L+GKD++A+A+TGSGKT AY +P++ ++ N P SK A A++LVPT+ELC+QV
Sbjct: 61 LQGKDILAKARTGSGKTAAYTIPIVQKILMAKQNTKIPSSKGAGVKAVILVPTKELCEQV 120
Query: 116 YSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQS 175
++ + C + VV L S + R L PDI+I+TP + L Q+
Sbjct: 121 QQNLLQICFYCTHLIN--VVHLGSEQSVDEQRGMLRDVPDIIISTPTRLVNHLKN---QN 175
Query: 176 KSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILH 235
SL++LV+DEADL+LSYGY++D++ + + +P+ CQ LMSAT + VD+LKKLILH
Sbjct: 176 IKLDMSLEMLVIDEADLVLSYGYQEDIQTIKSFLPKVCQGFLMSATLTPQVDELKKLILH 235
Query: 236 NPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDM 295
P IL L E D+ N+ ++ I D+ L I TLL+L+L+Q K L F N
Sbjct: 236 TPAILRLEE-----DQSEKTNLTEYSIKTVSFDRYLLIFTLLRLKLMQGKILFFVNDTFQ 290
Query: 296 AFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGG 355
++LKLFLE+F I++A+LN+ELP NSR HI+ +FN G++DYLIATD++ K + +
Sbjct: 291 CYKLKLFLEQFHIRAAVLNSELPINSRHHIILQFNKGIYDYLIATDESFKSTKSELKDFD 350
Query: 356 HVDS 359
+DS
Sbjct: 351 EIDS 354
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 72/169 (42%), Positives = 99/169 (58%), Gaps = 6/169 (3%)
Query: 364 KHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPD 423
+ P D E+GV RGIDFKNV VINF+ P+ YVHR+GRT R + G ++S V+
Sbjct: 465 RKPSKLADKEYGVARGIDFKNVDIVINFDFPRTYKNYVHRVGRTARGNSKGVALSFVTKR 524
Query: 424 EMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQD 483
+ ++I+ E + PF +E RYR EDV SVTK + +R +
Sbjct: 525 NEPLLKKIQR----KRAEHGYNVKPFEF-KMATIEGFRYRVEDVLNSVTKNTISRARKTE 579
Query: 484 LRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPP-ASHLRDVPDYLL 531
L EI+NSEKLK HF+ NPKDL++LKHD L++K HL +P+YL+
Sbjct: 580 LEQEIINSEKLKNHFKENPKDLEILKHDIPLTRKHDLKEHLGYIPEYLV 628
>gi|432092632|gb|ELK25167.1| Putative ATP-dependent RNA helicase DDX56 [Myotis davidii]
Length = 445
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 162/395 (41%), Positives = 233/395 (58%), Gaps = 21/395 (5%)
Query: 132 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 191
++V ++++ ++ RA L PDIV+ TP + L L+ + DSL++LV+DEAD
Sbjct: 13 IRVANVSAAEDSASQRAVLMEKPDIVVGTPSRLLNHLQQDSLKLR---DSLELLVMDEAD 69
Query: 192 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 251
LL S+G+E++LK+L +PR Q LMSAT + DV LK+L+LHNP L L E
Sbjct: 70 LLFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQTLKELVLHNPVTLKLQE----SQL 125
Query: 252 VIPKNVQQFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 310
P+ +QQF + C +E DK L + LLKL LV+ K+L+F NT++ +RL+LFLE+F I +
Sbjct: 126 PGPEQLQQFQVVCGAEEDKFLLLYALLKLSLVRGKSLLFVNTLERGYRLRLFLEQFSIPA 185
Query: 311 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL 370
+LN ELP SR HI+ +FN G +D +IATD G V ++ K PK
Sbjct: 186 CVLNGELPLRSRCHIISQFNQGFYDCVIATDAEVL--------GAPVKGKRQGKGPKGNR 237
Query: 371 --DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF 428
D E GV RGIDF +V V+NF++P YVHR GRT RA N G ++ V P E
Sbjct: 238 ASDLEAGVARGIDFHHVCAVLNFDLPPTPEAYVHRAGRTARANNPGVVLTFVLPTEQSQL 297
Query: 429 EEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEI 488
I+ +G + + + F + +E RYR D +SVTK A+RE+R ++++ E+
Sbjct: 298 GRIEELLGGENGAPALLPYQFRM---EEIEGFRYRCRDAMRSVTKQAIREARLKEIKEEL 354
Query: 489 LNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHL 523
L+SE+LK +FE NP+DL LL+HD L HL
Sbjct: 355 LHSERLKTYFEDNPRDLQLLRHDLPLHPAVVKPHL 389
>gi|298707633|emb|CBJ30201.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 818
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 143/317 (45%), Positives = 211/317 (66%), Gaps = 15/317 (4%)
Query: 30 ELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLF 89
+ GLD RLV A+ K G PTL+Q IPL L GKD++ RA+TGSGKT A+ LPLL ++
Sbjct: 51 DFGLDRRLVKAVAKMGFVYPTLVQNKCIPLALRGKDLLVRARTGSGKTAAFALPLLQKIL 110
Query: 90 N--ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
E+ P A+VLVPTRELC Q + + L+ C+ QV L + + +M A +
Sbjct: 111 RRKEAEPGLPRGVRAVVLVPTRELCDQARAHLSELMHYCRDQVSL-LALVDDNMAAQE-- 167
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
AAL D+++ATP + L G ++ K D+++ LV+DEADL+LS+GY +D++A++
Sbjct: 168 AALRDKADVLVATPARLVAHLKAGNVELK---DTVETLVVDEADLVLSFGYSEDIRAVTK 224
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 267
+P+ CQ LMSAT S++++ LK+++LH+P +L L E +D + QF++S +++
Sbjct: 225 RLPKICQGFLMSATLSAELEDLKRVVLHSPAVLKLEE--GARD----GRLSQFYLSLADK 278
Query: 268 -DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
DK L + +KL L++ K L F N + ++RLKLFLE+F ++SA+LNAELP NSRLHIL
Sbjct: 279 GDKFLVVFAFIKLGLLEGKGLFFVNETESSYRLKLFLEQFHVRSAVLNAELPLNSRLHIL 338
Query: 327 EEFNAGLFDYLIATDDT 343
+EFN G+FDYLI TDD+
Sbjct: 339 QEFNRGIFDYLIVTDDS 355
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 81/148 (54%), Gaps = 20/148 (13%)
Query: 457 VESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKD-LS 515
+E RYR ED K VT+++VRE+RA +L+ EI+NS+KL +F+ N DL +L+HDK L
Sbjct: 617 IERFRYRVEDTLKKVTRVSVREARAAELKAEIVNSQKLAGYFKENAGDLKVLRHDKSVLH 676
Query: 516 KKPPASHLRDVPDYLL-------DAKTQEACKMVKLARAAMGNKNSSRRQGP-----RRK 563
HL+ +PDYL+ + TQ K +K AR + RRQG RRK
Sbjct: 677 PLRKLDHLKHIPDYLMPPGLQTGEDPTQRQRKRIKRARG-----GAKRRQGQGLDQGRRK 731
Query: 564 FRKSDPLKSFSAEPTKRAGKGRMKREGR 591
+DPL++F A G + EGR
Sbjct: 732 --DNDPLQTFEASELGADGSYGGEEEGR 757
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 34/50 (68%)
Query: 371 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLV 420
DSEFG RG+DF+ V V+N + P A+ Y HR+GRT R +G ++SLV
Sbjct: 481 DSEFGAARGVDFRGVSFVLNVDFPPTASSYTHRVGRTARGGASGTALSLV 530
>gi|260817772|ref|XP_002603759.1| hypothetical protein BRAFLDRAFT_86587 [Branchiostoma floridae]
gi|229289082|gb|EEN59770.1| hypothetical protein BRAFLDRAFT_86587 [Branchiostoma floridae]
Length = 359
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 144/325 (44%), Positives = 212/325 (65%), Gaps = 11/325 (3%)
Query: 209 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN--VQQFWISCSE 266
+P+ Q LMSAT S DV LKKLILHNP L L E +P++ + Q+ I C E
Sbjct: 2 LPKIYQAFLMSATLSEDVQALKKLILHNPVTLKLEE------SQLPESDRLTQYHIMCEE 55
Query: 267 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
DK L I TLLKL LV+ K ++F N+ID +RLKLFLE+F + + +LN+ELP +SR HI+
Sbjct: 56 GDKFLIIYTLLKLRLVRGKTILFVNSIDRCYRLKLFLEQFSVPACVLNSELPVSSRCHIV 115
Query: 327 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 386
+FN GL++ +IATD++ +D + ++K K K K D E+GV RGIDF+ V
Sbjct: 116 NQFNQGLYNLVIATDESALDAEDSGGKEKTGKAKKKAKRFKKKKDKEYGVSRGIDFQFVS 175
Query: 387 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNII 446
VINF+ P Y+HR+GRT R + G ++SL+S E+ + ++ ++ + D N+ +I
Sbjct: 176 NVINFDFPTQVDSYIHRVGRTARGDSQGTALSLISAQELPLLQQAETALSGDTNDP--VI 233
Query: 447 APFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLD 506
P+ + +E RYRA+D +SVTK VRE+R +++R+EILNSEKLK++FE NP+DL
Sbjct: 234 KPYRFKMEE-IEGFRYRAKDALRSVTKTNVREARLKEIRSEILNSEKLKSYFEDNPRDLQ 292
Query: 507 LLKHDKDLSKKPPASHLRDVPDYLL 531
+L+HDK L+ H+++VP+YL+
Sbjct: 293 VLRHDKALAASKVKPHMKNVPEYLM 317
>gi|449017498|dbj|BAM80900.1| similar to RNA helicase [Cyanidioschyzon merolae strain 10D]
Length = 552
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 175/523 (33%), Positives = 285/523 (54%), Gaps = 58/523 (11%)
Query: 26 KSFEELGLDLRLVHA-LNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPL 84
++F +LGLD R+V A L K + P +Q+A IP +L GKDV+ A TGSGKT AY LPL
Sbjct: 7 RTFPQLGLDARVVEAVLRKLRWRTPAPVQEAVIPAVLSGKDVLVNAPTGSGKTGAYALPL 66
Query: 85 LH---RLFNESSPKSKLAPA--ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTS 139
+H ++++E + + + A+VLVP+++L Q+ ++L E + L +T
Sbjct: 67 VHLLLQIYDEENARGAWCESTRAIVLVPSQDLALQLGRTFVSLTE----NLPLHCCVVTG 122
Query: 140 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE 199
+ L + + TP + + L+T + ++ +LV+DEADL+LS+
Sbjct: 123 AFSNKALIDTWTDA-SVCVGTPAGLAQSLTT------ERARNVVLLVIDEADLVLSFASS 175
Query: 200 -DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ 258
+ + IP Q +L+SAT +V+ L+ L LH P + D NVQ
Sbjct: 176 ATQVHDVVRKIPTNAQGVLLSATLDEEVEALRALALHQPEACRIEASWDADPSGNKSNVQ 235
Query: 259 QFWIS----CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILN 314
+W+S ER LY++ L+L +++ + L+F +++ A+R+KLFL++FGI+ A+LN
Sbjct: 236 -YWVSRLSGLDERFAWLYVV--LRLRILRDRILVFVDSVLEAYRVKLFLDRFGIRCAVLN 292
Query: 315 AELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEF 374
A+LP SR H L++F+AG+FD L+ +D+ T + + +
Sbjct: 293 ADLPVTSRQHCLQQFDAGIFDILVTSDEATTLKS-----------------------TGY 329
Query: 375 GVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 434
RG+DF++V VI+F P+N ++HR GRTGRA G V+LV+ D+ + I+ F
Sbjct: 330 SASRGLDFRSVDVVIHFTAPKNIEVFLHRSGRTGRAGRAGKVVTLVTNDDES--QRIERF 387
Query: 435 VGDDENEDSNIIAPFPLLA--QNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSE 492
E+ ++ LLA + +E+ RYR ED + T +AVRE+R Q LR+E+L S
Sbjct: 388 F--TEHARLSMQGQPRLLAVRKETMETFRYRVEDALCACTDLAVREARVQALRDEMLRSR 445
Query: 493 KLK----AHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 531
+ A + + DL++L HD+ L +K A+HL +PDY+L
Sbjct: 446 AFRDALLAARQGDRVDLEVLSHDRPLVRKRLAAHLGHIPDYML 488
>gi|389745435|gb|EIM86616.1| DEAD-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 666
Score = 259 bits (662), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 139/316 (43%), Positives = 211/316 (66%), Gaps = 22/316 (6%)
Query: 37 LVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNE----- 91
L+ AL G +PTL+QQ +IPL LE +DV+ARA+TGSGKT AY +PL+ ++ N
Sbjct: 24 LLRALADLGFARPTLVQQKAIPLALENRDVLARARTGSGKTAAYCIPLVQKILNAKANLG 83
Query: 92 SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL-RAAL 150
+ +++ A ALVLVPT+EL +QV + + LI+ C+G V ++ +S + L ++ L
Sbjct: 84 AGDEARQATRALVLVPTKELSEQVSTHLKGLIKYCEGDV---IISNVASGTTTHLQKSLL 140
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKAL--SA 207
A PD+V+ TP + +LQ+KS +L+ LV+DEADL+ SYG+++D++ + +
Sbjct: 141 AEKPDVVVGTPSKL-----LALLQAKSLQLGALESLVIDEADLIFSYGHDEDVRQILSNG 195
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 267
+P+ Q LMSAT + DV+ LK L+L +P IL L E DE N+ Q+ + CSE
Sbjct: 196 YLPKVFQSFLMSATMTEDVETLKGLVLRSPAILRLEE-----DEDEAANLSQYSVKCSEV 250
Query: 268 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 327
DK L + +LKL+L++ K +IF N +D ++RLKLFLE+F IKS +LN+ELP NSR H+++
Sbjct: 251 DKFLLVYVILKLKLIKGKCIIFVNDVDRSYRLKLFLEQFSIKSCVLNSELPLNSRYHVVQ 310
Query: 328 EFNAGLFDYLIATDDT 343
EFN G++DY+IATD++
Sbjct: 311 EFNKGVYDYIIATDES 326
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 104/175 (59%), Gaps = 16/175 (9%)
Query: 371 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE 430
DSE+GV RGIDF +V V+NF++P ++ Y HR+GRT RA +G S+S + P+ F +
Sbjct: 417 DSEYGVTRGIDFIDVACVLNFDLPPSSRSYTHRVGRTARAGRSGMSLSFIVPESE--FGK 474
Query: 431 IKSFVGDDENEDSNIIAPFPLLAQNA--------------VESLRYRAEDVAKSVTKIAV 476
K G E ++ Q A VE+ RYR ED ++VT+ A+
Sbjct: 475 NKVVGGVAGTERDEVVWERIEREQGARGSKVREYKFDMKQVEAFRYRMEDALRAVTRSAI 534
Query: 477 RESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 531
RE+R ++L+ EILNS+KLKAHFE NP DL+ L+HDK L SH++ VP YLL
Sbjct: 535 REARVKELKQEILNSDKLKAHFEDNPLDLEFLRHDKPLHPTRVQSHMKHVPKYLL 589
>gi|395326974|gb|EJF59378.1| DEAD-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 651
Score = 259 bits (662), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 145/334 (43%), Positives = 212/334 (63%), Gaps = 21/334 (6%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF ++ LD R++ AL G +PTL+Q IPL LE +D++ARA+TGSGKT AY +P++
Sbjct: 15 SFSQI-LDARILRALADMGFSRPTLVQSKGIPLALENRDILARARTGSGKTAAYCIPVVQ 73
Query: 87 RLFNESSPKS-----KLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSM 141
++ N S S + A AL+LVPTREL +QV + + +L+ C V V ++
Sbjct: 74 KVLNAKSSISEEDSRRQATRALILVPTRELAEQVSAHLKSLLTYCDADVA--VANASTGT 131
Query: 142 PASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYED 200
A + L+ PDIVIATP + +LQSK S SL+ LV+DEADL+LSYG+++
Sbjct: 132 TAHLQKTLLSDNPDIVIATPS-----RALALLQSKDLSLGSLESLVIDEADLILSYGHDE 186
Query: 201 DLKAL--SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ 258
D++ + +P+ Q LMSAT + DV+ LK L L +P IL L D +DE N+
Sbjct: 187 DVRQIFGGGYLPKVFQSFLMSATMTEDVEALKGLALRSPVILKLE---DEEDEA--ANLT 241
Query: 259 QFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELP 318
Q+ + CSE DK L +LKL+L++ K ++F N +D +RLKLFLE+F IKS +LN+ELP
Sbjct: 242 QYSVRCSEVDKFLLTYVILKLKLIKGKCILFVNDVDRCYRLKLFLEQFSIKSCVLNSELP 301
Query: 319 QNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSD 352
NSR H+++EFN G++DY+IA+D+ K + S+
Sbjct: 302 LNSRYHVVQEFNKGVYDYIIASDENSGKAEQDSN 335
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 108/174 (62%), Gaps = 14/174 (8%)
Query: 371 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM----- 425
D+E+GV RG+DF +V VINF++P ++ Y HR+GRT RA TG ++S V P E+
Sbjct: 410 DAEYGVSRGVDFVDVSCVINFDLPASSRAYTHRVGRTARAGRTGMALSFVVPKELWGKNR 469
Query: 426 --------KIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVR 477
K EE+ + V ++ + I + + VE+ RYR ED ++VT+ A++
Sbjct: 470 VVGCVESAKRDEEVFARVEREQAARGSQIKEYQFDMKQ-VEAFRYRMEDALRAVTRSAIK 528
Query: 478 ESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 531
E+R ++L+ EILNS+KLKAHFE NP DL+ L+HDK L SH++ VP YLL
Sbjct: 529 EARIKELKTEILNSDKLKAHFEDNPLDLEYLRHDKPLHPTRVQSHMKHVPKYLL 582
>gi|388583305|gb|EIM23607.1| DEAD-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 605
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 152/327 (46%), Positives = 213/327 (65%), Gaps = 19/327 (5%)
Query: 23 EEEKSFEELG--LDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAY 80
E E+SF + LD RL+ AL G +PTL+Q ++PL L GKD++ARAKTGSGKT AY
Sbjct: 6 ESEESFAKFDHLLDKRLLRALADLGFARPTLVQAKAVPLALNGKDILARAKTGSGKTLAY 65
Query: 81 LLPLLHRLFNE-SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTS 139
LLP+ ++ E SK AL+LVPTREL +QV S + +L++ + +V V L
Sbjct: 66 LLPIAQKVLAEKDDGDSKPETRALILVPTRELSEQVSSHLKSLLKYSQKEVS--QVNLAG 123
Query: 140 SMPASDL-RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYG 197
S + R L+ PDIVI+TP + G LQSKS S +LK L +DEADL+LSYG
Sbjct: 124 SGTDNKFQRLLLSDKPDIVISTPSRL-----IGHLQSKSLSLSTLKTLAIDEADLILSYG 178
Query: 198 YEDDLKAL--SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK 255
+ DD+KAL +P+ Q LMSAT + DV+KL+ ++L NP ILTL + +E
Sbjct: 179 HADDVKALLSGGYLPKIYQSFLMSATMTQDVEKLRGMVLRNPAILTLED-----NEDDSS 233
Query: 256 NVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNA 315
N++Q+++ C E DK L LLKL+L++ K ++F N ++ F+L+LFLE FGI++ +LN
Sbjct: 234 NLKQYYVKCPENDKYLLTYVLLKLKLIKGKVIMFVNNVERGFKLRLFLEAFGIRAVVLNR 293
Query: 316 ELPQNSRLHILEEFNAGLFDYLIATDD 342
ELP NSR HI++EFN G++DY+IATD+
Sbjct: 294 ELPINSRFHIVQEFNKGVYDYMIATDE 320
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 110/185 (59%), Gaps = 22/185 (11%)
Query: 358 DSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASV 417
D++K+K K + EFG+ RGIDF +V VINF++P+N++ Y HR+GRT RA +G S+
Sbjct: 391 DNKKTKMSKKG--EKEFGISRGIDFVDVACVINFDLPKNSSSYTHRVGRTARAGRSGISL 448
Query: 418 SLV--------SPDEMKIFEEI---KSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAED 466
+ V +E KI+++I + G +N + VE +YR D
Sbjct: 449 TFVVNGETKKSKRNEEKIWKKISKRQERRGGSQNWE---------FDWKQVEGFKYRVND 499
Query: 467 VAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDV 526
K VT AV+E+R ++L+NEILN++KLKAHFE NP D + LKHDK L SHL+ V
Sbjct: 500 ALKMVTPNAVKEARVKELKNEILNNDKLKAHFEDNPVDYEFLKHDKPLHPMRQQSHLKHV 559
Query: 527 PDYLL 531
P YL+
Sbjct: 560 PGYLM 564
>gi|66359422|ref|XP_626889.1| Dbp9p, eIF4A-1-family RNA SFII helicase, DEXDc+HELICc
[Cryptosporidium parvum Iowa II]
gi|46228356|gb|EAK89255.1| Dbp9p, eIF4A-1-family RNA SFII helicase, DEXDc+HELICc
[Cryptosporidium parvum Iowa II]
Length = 664
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 175/553 (31%), Positives = 291/553 (52%), Gaps = 63/553 (11%)
Query: 13 KQAEEEEAEAEEEKSFEELG---LDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVAR 69
KQ + E ++ E SF EL LD R++ +L PT +Q I I+EGKD++
Sbjct: 1 KQTMKNENDSNELLSFSELYGSILDRRIIQSLTNSNYLVPTKVQVEVIKKIIEGKDLLIN 60
Query: 70 AKTGSGKTFAYLLPLLHRLFNESSPKSKLAP--AALVLVPTRELCQQVYSEVMALIELCK 127
+ TGSGKT AY +P+ H L N S+ +LA +LVLVP+REL Q + L+ C+
Sbjct: 61 SYTGSGKTLAYAIPICHNLLNISN---RLANKVYSLVLVPSRELVIQTHEIFEQLLVFCE 117
Query: 128 GQVQLKVVQLTSS---MPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKI 184
V + + DL+ + +I+I+TPG + + G+ +S ++
Sbjct: 118 NNVSVGTIFNADDNLLHKGKDLKYG-SFRYNILISTPGDI--LCAKGMGSKESIFQNIAH 174
Query: 185 LVLDEADLLLSYGYEDDLKALSAVIP----RGCQCLLMSATSSSDVDKLKKLILHNPYIL 240
LV+DEADLL ++GY+ D+ + ++P R QC+L+SAT + +VD LKK++LH P +
Sbjct: 175 LVIDEADLLFAFGYDKDMSKVLDLLPNSQDRKYQCILLSATLNKEVDSLKKMVLHRPIFV 234
Query: 241 TL-PEV---------GDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFT 290
+ PE+ D K + + + I S DK L + LLK+ ++ +K LIF
Sbjct: 235 DIKPEIKEDYFDQEGNDSKCQTSGLLSEYYTICDSMVDKWLMLYILLKMNVIPRKCLIFV 294
Query: 291 NTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQ 350
+ +D A+ +KLFLE+FG+ +L +P +R +++ FN G +D L+ +D EKD+
Sbjct: 295 SEVDTAYSIKLFLERFGMSCGVLTPIIPAATRRMLIQCFNQGSYDILVTSD--TINEKDE 352
Query: 351 SDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRA 410
S + L RG+D+K V +V NF+ P + Y+H IGRT R
Sbjct: 353 S--------------VLSILKDNSITYRGVDYKEVASVFNFDCPSSVRSYIHHIGRTARG 398
Query: 411 YNTGASVSLVS---PDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDV 467
++G S+++V+ P+EM++ +E+ +D N N + + V RYR ED
Sbjct: 399 GSSGVSITIVNSNIPNEMEVLDELL----NDSNRKMNKLK----ITSEEVACFRYRIEDC 450
Query: 468 AKSVTKIAVRESRAQDLRNEILNSEKL--KAHFEVNPKDLDLLK-HDKDLSKKPPAS--- 521
+ +TK ++ + Q+++ ILN+ +L +F +P D ++LK + K ++ S
Sbjct: 451 MRILTKGNIQRHKLQEIQGLILNNTRLLKSGYFSKHPGDKNVLKSYHKHITNALNISNSG 510
Query: 522 --HLRDVPDYLLD 532
H++++PDYL D
Sbjct: 511 REHIKNIPDYLYD 523
>gi|449541864|gb|EMD32846.1| hypothetical protein CERSUDRAFT_108634 [Ceriporiopsis subvermispora
B]
Length = 649
Score = 256 bits (653), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 142/333 (42%), Positives = 212/333 (63%), Gaps = 21/333 (6%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF + +D RL+ AL G +PTL+Q +IPL LE +D++ARA+TGSGKT +Y +P++
Sbjct: 15 SFAHI-VDARLLRALADMGFARPTLVQTKAIPLALENRDILARARTGSGKTASYCIPVVQ 73
Query: 87 RLFNESSPKSKLAPA-----ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSM 141
++ N S + PA L+LVPTREL +QV + + L+ C V V ++
Sbjct: 74 KILNAKSNLPEEDPARQATRGLILVPTRELAEQVSAHLRGLLAYCDKDVT--VANVSGGT 131
Query: 142 PASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYED 200
+ + L+ PDI++ATP + LS +LQSK+ S S++ LV+DEADL+LSYG+++
Sbjct: 132 TSHLQKVLLSDSPDIIVATPS---RGLS--LLQSKTLSLSSVESLVIDEADLILSYGHDE 186
Query: 201 DLKAL--SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ 258
D++ + +P+ Q LMSAT + DV+ LK L+L NP IL L E DE N+
Sbjct: 187 DVRQIFGGGYLPKVFQSFLMSATMTDDVEALKGLVLRNPAILKLEE-----DEDEAANLT 241
Query: 259 QFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELP 318
Q+ + CSE DK L +LKL+L++ K ++F N +D +RLKLFLE+F IKS +LN+ELP
Sbjct: 242 QYSVRCSEVDKFLLAYVILKLKLIKGKCILFVNDVDRCYRLKLFLEQFSIKSCVLNSELP 301
Query: 319 QNSRLHILEEFNAGLFDYLIATDDTQTKEKDQS 351
NSR H ++EFN G++DY+IA+D++ + K S
Sbjct: 302 LNSRYHTVQEFNKGVYDYIIASDESAGRIKQDS 334
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/174 (40%), Positives = 102/174 (58%), Gaps = 14/174 (8%)
Query: 371 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE 430
D+E+GV RG+DF +V VINF++P ++ Y HR+GRT RA +G ++S V P E +
Sbjct: 405 DAEYGVSRGVDFIDVSCVINFDLPSSSRAYTHRVGRTARAGRSGMALSFVVPREEWGKNK 464
Query: 431 IKSFVGDDENEDSNIIAPFP-------------LLAQNAVESLRYRAEDVAKSVTKIAVR 477
+ V + D + A VE+ RYR ED ++VT+ A++
Sbjct: 465 VVGGV-ESTRRDERVFARIEKEQAARGSQMKEYQFDMKQVEAFRYRMEDALRAVTRSAIK 523
Query: 478 ESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 531
E+R ++L++EILNS+KLKAHFE NP DLD L+HDK L H++ VP YLL
Sbjct: 524 EARIKELKSEILNSDKLKAHFEDNPNDLDYLRHDKPLHPTRVQPHMKHVPKYLL 577
>gi|209882032|ref|XP_002142453.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
gi|209558059|gb|EEA08104.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
Length = 615
Score = 255 bits (651), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 173/584 (29%), Positives = 310/584 (53%), Gaps = 51/584 (8%)
Query: 33 LDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNES 92
LD R+V ALN +G PT +Q +I L++EGKDV+ +KTGSGKT A+++P+ H L +
Sbjct: 12 LDRRIVQALNSQGFVYPTKVQSDAIGLVIEGKDVLINSKTGSGKTLAFIIPICHNLLSNQ 71
Query: 93 SPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAG 152
+ S++ L+LVP+REL QVY ++++I C ++++ S + + + +
Sbjct: 72 NSGSRM--KVLILVPSRELVNQVYDVLLSVIRYCGNKIRI------SHLISENSSWSYIS 123
Query: 153 PPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 212
+IVI+TP + S+ + + ++ LV+DEADLL ++GYE ++ + ++P
Sbjct: 124 KCNIVISTPYDIVN--SSDQDKKVKWLCNVSCLVVDEADLLFAFGYEKYMEIILELLPNS 181
Query: 213 C----QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE-VIPKN-----VQQFWI 262
QC+ SAT S ++ L +LH P + + E+ ++ V+ K+ ++++++
Sbjct: 182 AGKKYQCIFCSATLSKNLKLLNSKLLHKP--ICVNEISQANEKSVLDKSSIEGILKEYYV 239
Query: 263 SCSE-RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 321
+CS +K L + L K++++ K LIF ++IDMA+ ++LFL+KF I + I++ LP ++
Sbjct: 240 NCSNITEKWLMLYVLFKMQVIPIKCLIFASSIDMAYSIRLFLDKFDISAGIMSPILPFST 299
Query: 322 RLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGID 381
R I++ FN G D LI D T E D+ + S KSK E RGID
Sbjct: 300 RQLIIQYFNQGTIDILITADITN--ELDEISTKDILSSAKSK---------EAVAYRGID 348
Query: 382 FKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENE 441
++ V +V+NF+ P + Y+HRIGRT R ++G +++ ++ D E ++ + ++
Sbjct: 349 YQGVSSVLNFDCPTSVRSYIHRIGRTARGNSSGTAITFINKDIPNDVELLQLLIARNKYN 408
Query: 442 DSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKL--KAHFE 499
D I P + V YR ED KS+TK +R + ++++ IL+S +L +F
Sbjct: 409 DDKGIEPLD-FGPHDVSCFNYRIEDCLKSITKTNIRRYKLKEIQGLILSSSRLIKGGYFS 467
Query: 500 VNPKDLDLLK--HDKDLSKKPPAS----HLRDVPDYL------LDAKTQEACKMVKLARA 547
+P++ +L+ H LS + +L+ P YL + Q C
Sbjct: 468 KHPEERSVLRSYHKHLLSTLAISGTGREYLKLTPRYLEEIVYPIVQSIQPNCNATTATEQ 527
Query: 548 AMGNK--NSSRRQGPRRKFRKSDPLKSFSAEPTKRAGKGRMKRE 589
A+ + + R++ PR K + D L ++ + + K ++K+E
Sbjct: 528 AIYTQFPEALRKKEPRYKLSRYDNLHKYNTQSKDISRKSQLKKE 571
>gi|302406528|ref|XP_003001100.1| ATP-dependent RNA helicase DBP9 [Verticillium albo-atrum VaMs.102]
gi|261360358|gb|EEY22786.1| ATP-dependent RNA helicase DBP9 [Verticillium albo-atrum VaMs.102]
Length = 423
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 145/341 (42%), Positives = 205/341 (60%), Gaps = 42/341 (12%)
Query: 104 VLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGC 163
+LVPTREL QV+ + +L C +Q V+LT + + RA L+ PDIVI+TP
Sbjct: 1 MLVPTRELADQVHRSIESLAAFCAKDIQ--AVKLTDKVSTTVQRALLSANPDIVISTPAR 58
Query: 164 MPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSS 223
+ +S+ L + + LVLDEADL+LSYGY++DL+ ++ +P+G Q +LMSAT +
Sbjct: 59 AWENVSSSALSLANLTH----LVLDEADLVLSYGYKEDLQNVARSLPKGVQTILMSATLT 114
Query: 224 SDVDKLKKLILHNPYILTL--PEV-GDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLE 280
+VD +K L NP +L L PE GD + QF + C+E +K L I + KL+
Sbjct: 115 PEVDTVKGLFCRNPALLDLEQPEAEGD--------GITQFVVKCAEDEKFLLIYVIFKLK 166
Query: 281 LVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIAT 340
L+Q KAL+F + +D +++LKL+ E+FGI+S ILNAELP NSRLH+++EFN G++D LIA+
Sbjct: 167 LIQGKALVFCHDVDRSYKLKLYFEQFGIRSCILNAELPVNSRLHVVDEFNKGVYDILIAS 226
Query: 341 DDTQT-------------------KEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGID 381
DD + KE +S + R S+K D E+GV RGID
Sbjct: 227 DDNEVVGDEGQEDEGEEETTEEPKKETKKSKKKQQQQQRASRK------DKEYGVSRGID 280
Query: 382 FKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSP 422
FKNV VINF++P +A Y HRIGRT RA G ++S V P
Sbjct: 281 FKNVAAVINFDLPTSAKSYTHRIGRTARAGQRGMALSFVIP 321
>gi|353231552|emb|CCD77970.1| putative dead box ATP-dependent RNA helicase [Schistosoma mansoni]
Length = 555
Score = 253 bits (645), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 140/364 (38%), Positives = 224/364 (61%), Gaps = 18/364 (4%)
Query: 23 EEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLL 82
E F +L LD R++ A++ KPT IQQA IPL+ K ++ AKTGSGKT A+ +
Sbjct: 2 ESVDEFHQLNLDQRILKAISDLNWVKPTDIQQAVIPLVFAKKCLIVHAKTGSGKTAAFAI 61
Query: 83 PLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQ-LKVVQLTSSM 141
P+L+ L E + + +VL PT+ELC QV S + L CK + + V +++
Sbjct: 62 PILNDLLQEKQFAMCQSTSVVVLAPTKELCSQVASNIKCL---CKYAAKSISSVDISTGH 118
Query: 142 PASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDD 201
++ + PDI+I TP + K L +G+L K L+ +V+DEADL+ ++GYED+
Sbjct: 119 DTDQIKPLILENPDIIIGTPSRLMKVLRSGILSLKD----LRCIVVDEADLIFTFGYEDE 174
Query: 202 LKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ--Q 259
++ L + +P+ Q +LMSAT +++ ++ N + + E+ D + +P + Q Q
Sbjct: 175 IRDLRSYLPQKIQAILMSATLDDTSKVIRRYLVKNADWVRV-ELPD--EAFLPGDSQLTQ 231
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+ IS + DK ++ L KL +V+ K LIFTN++D ++L+LFLE+FGI++A+LN+ELP
Sbjct: 232 YIISAEDNDKYAILIALFKLRIVRGKTLIFTNSVDRCYKLRLFLEEFGIRAALLNSELPV 291
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
SR H++++FN GL+DYL+ATD++Q ++EGG +KS K P+ + D E+GV RG
Sbjct: 292 KSRSHVIDQFNRGLYDYLLATDESQADHSTSNNEGG----KKSLKKPRCR-DVEYGVSRG 346
Query: 380 IDFK 383
IDF+
Sbjct: 347 IDFQ 350
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 57/83 (68%), Gaps = 1/83 (1%)
Query: 449 FPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLL 508
F L + V+ RYRA DV + +T+ VRE+R ++++ E+LNSE+LK +F+ + DL+ L
Sbjct: 349 FQLFRLSEVDGFRYRAADVMRHITRKVVREARLKEIKIELLNSERLKGYFQDHIPDLEAL 408
Query: 509 KHDKDLSKKPPASHLRDVPDYLL 531
+HDK L K HL+DVPDYL+
Sbjct: 409 RHDKPL-KHVAQPHLKDVPDYLV 430
>gi|256088729|ref|XP_002580478.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
Length = 500
Score = 253 bits (645), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 140/364 (38%), Positives = 224/364 (61%), Gaps = 18/364 (4%)
Query: 23 EEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLL 82
E F +L LD R++ A++ KPT IQQA IPL+ K ++ AKTGSGKT A+ +
Sbjct: 2 ESVDEFHQLNLDQRILKAISDLNWVKPTDIQQAVIPLVFAKKCLIVHAKTGSGKTAAFAI 61
Query: 83 PLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQ-LKVVQLTSSM 141
P+L+ L E + + +VL PT+ELC QV S + L CK + + V +++
Sbjct: 62 PILNDLLQEKQFAMCQSTSVVVLAPTKELCSQVASNIKCL---CKYAAKSISSVDISTGH 118
Query: 142 PASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDD 201
++ + PDI+I TP + K L +G+L K L+ +V+DEADL+ ++GYED+
Sbjct: 119 DTDQIKPLILENPDIIIGTPSRLMKVLRSGILSLKD----LRCIVVDEADLIFTFGYEDE 174
Query: 202 LKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ--Q 259
++ L + +P+ Q +LMSAT +++ ++ N + + E+ D + +P + Q Q
Sbjct: 175 IRDLRSYLPQKIQAILMSATLDDTSKVIRRYLVKNADWVRV-ELPD--EAFLPGDSQLTQ 231
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+ IS + DK ++ L KL +V+ K LIFTN++D ++L+LFLE+FGI++A+LN+ELP
Sbjct: 232 YIISAEDNDKYAILIALFKLRIVRGKTLIFTNSVDRCYKLRLFLEEFGIRAALLNSELPV 291
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
SR H++++FN GL+DYL+ATD++Q ++EGG +KS K P+ + D E+GV RG
Sbjct: 292 KSRSHVIDQFNRGLYDYLLATDESQADHSTSNNEGG----KKSLKKPRCR-DVEYGVSRG 346
Query: 380 IDFK 383
IDF+
Sbjct: 347 IDFQ 350
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 57/83 (68%), Gaps = 1/83 (1%)
Query: 449 FPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLL 508
F L + V+ RYRA DV + +T+ VRE+R ++++ E+LNSE+LK +F+ + DL+ L
Sbjct: 349 FQLFRLSEVDGFRYRAADVMRHITRKVVREARLKEIKIELLNSERLKGYFQDHIPDLEAL 408
Query: 509 KHDKDLSKKPPASHLRDVPDYLL 531
+HDK L K HL+DVPDYL+
Sbjct: 409 RHDKPL-KHVAQPHLKDVPDYLV 430
>gi|67623801|ref|XP_668183.1| ENSANGP00000021948 [Cryptosporidium hominis TU502]
gi|54659367|gb|EAL37947.1| ENSANGP00000021948 [Cryptosporidium hominis]
Length = 661
Score = 252 bits (643), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 171/547 (31%), Positives = 287/547 (52%), Gaps = 59/547 (10%)
Query: 17 EEEAEAEEEKSFEELG---LDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTG 73
+ E ++ E SF EL LD R++ +L PT +Q I I+EGKD++ + TG
Sbjct: 2 KNENDSNELLSFSELYGSILDRRIIQSLTNNNYLVPTKVQVEVIKKIIEGKDLLINSYTG 61
Query: 74 SGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLK 133
SGKT AY +P+ H L N S+ +S +LVLVP+REL Q + L+ C+ V +
Sbjct: 62 SGKTLAYAIPICHNLLNISN-RSANKVYSLVLVPSRELVIQTHEVFEQLLVFCENNVSVG 120
Query: 134 VVQLTSS---MPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEA 190
+ DL+ + +I+I+TPG + + G+ + ++ LV+DEA
Sbjct: 121 TIFNADDNLLHKGKDLKYG-SFRYNILISTPGDI--LCAKGMGSKEMIFQNIAHLVIDEA 177
Query: 191 DLLLSYGYEDDLKALSAVIP----RGCQCLLMSATSSSDVDKLKKLILHNPYILTL-PEV 245
DLL ++GY+ D+ + ++P R QC+L+SAT + +VD LKK++LH P + + PE+
Sbjct: 178 DLLFAFGYDKDMSKVLDLLPNSQDRKYQCILLSATLNKEVDSLKKMVLHRPIFVDIKPEI 237
Query: 246 --GDVKDEVIPKNVQ------QFWISCSER-DKLLYILTLLKLELVQKKALIFTNTIDMA 296
D E Q +++ C DK L + LLK+ ++ +K LIF + +D A
Sbjct: 238 KEDDFNQEGNDSKYQTSGLLSEYYTICDNMVDKWLMLYILLKMNVIPRKCLIFVSEVDTA 297
Query: 297 FRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGH 356
+ +KLFLE+FG+ +L +P +R +++ FN G +D L+ +D EKD+S
Sbjct: 298 YSIKLFLERFGMSCGVLTPIIPAATRRMLIQCFNQGSYDILVTSD--TINEKDES----- 350
Query: 357 VDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGAS 416
+ L RG+D+K V +V NF+ P + Y+H IGRT R ++G S
Sbjct: 351 ---------VLSILKDNSITYRGVDYKEVASVFNFDCPSSVRSYIHHIGRTARGGSSGVS 401
Query: 417 VSLVS---PDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTK 473
+++V+ P+EM++ +E+ +D N N + + V RYR ED + +TK
Sbjct: 402 ITIVNSNIPNEMEVLDELL----NDSNRKMNKLK----ITSEEVACFRYRIEDCMRILTK 453
Query: 474 IAVRESRAQDLRNEILNSEKL--KAHFEVNPKDLDLLK-HDKDLSKKPPAS-----HLRD 525
++ + Q+++ ILN+ +L +F +P D ++LK + K ++ S H+++
Sbjct: 454 GNIQRHKLQEIQGLILNNTRLLKSGYFSKHPGDKNVLKSYHKHITNALNISNSGREHIKN 513
Query: 526 VPDYLLD 532
+PDYL D
Sbjct: 514 IPDYLYD 520
>gi|361130742|gb|EHL02492.1| putative ATP-dependent RNA helicase dbp9 [Glarea lozoyensis 74030]
Length = 764
Score = 252 bits (643), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 156/409 (38%), Positives = 229/409 (55%), Gaps = 51/409 (12%)
Query: 209 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWIS--CSE 266
+P+G Q +LMSAT +S+V+ LK L NP +L L + E + V Q+ ++ C+E
Sbjct: 1 MPKGVQTVLMSATLTSEVETLKGLFCRNPVVLKL-----EEAEEAGEGVSQYTVNYRCAE 55
Query: 267 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
+K L + + KL+L++ K +IF ID +RLKL+LE+FGI+S ILN+ELP NSR+H++
Sbjct: 56 DEKFLLLYVIFKLKLIKGKCIIFVGDIDRCYRLKLYLEQFGIRSCILNSELPVNSRIHVV 115
Query: 327 EEFNAGLFDYLIATDD---------------------TQTKEKDQSDEGGHVDSRKSKKH 365
EEFN ++D +IA+D+ +TKE D + KK
Sbjct: 116 EEFNKNVYDIIIASDEHEVLGDEEEEKTEDAEEKADAGETKEADAEEAKSRSKEPSKKKR 175
Query: 366 PKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSP-DE 424
+ D ++GV RGIDFKN+ V+NF++P ++ Y HRIGRT RA TG ++S V P D+
Sbjct: 176 RVVEKDKDYGVSRGIDFKNLACVLNFDLPTSSKSYTHRIGRTARAGQTGMALSFVIPADQ 235
Query: 425 MK--IFEEIKSFVGDDENEDSNI----------IAPFPLLAQNAVESLRYRAEDVAKSVT 472
+ I I+S DDE + I + P+ + VE+ RYR D ++VT
Sbjct: 236 YRKHIPTSIES-AKDDEKVLAKIMRHQLKKGKEVKPYNFDMKQ-VEAFRYRMSDALRAVT 293
Query: 473 KIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLD 532
++A+RE+R ++LR E++ SEKLK HFE NP DL L+HD +L SHL+ VPDYLL
Sbjct: 294 RVAIREARTRELRQELMKSEKLKRHFEENPGDLHHLRHDGELRAARVQSHLKHVPDYLLP 353
Query: 533 AKTQEACK-----MVKLARAAMGNKNSSR---RQGPRRKFRKSDPLKSF 573
++A V + G +R +G + RK DPLKSF
Sbjct: 354 EGGRKAITAGEHGFVGFRKVTDGKNRRTRINKGRGKKAGGRKIDPLKSF 402
>gi|253745305|gb|EET01322.1| ATP-dependent RNA helicase [Giardia intestinalis ATCC 50581]
Length = 612
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 171/540 (31%), Positives = 276/540 (51%), Gaps = 44/540 (8%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
++ G+D RL AL G+ + IQ+ +IP L D++ ++ TGSGKT Y+ +LHR
Sbjct: 3 WDSFGIDPRLCDALRSLGLYEALPIQKLAIPEALAHNDILCQSFTGSGKTIIYVAAILHR 62
Query: 88 LFNESSPKSKLAPA--ALVLVPTRELCQQVYSEVMALI-ELCKGQVQLKVVQLTSSMPAS 144
+ E S K A +L++VPTRELC+Q+ ++A+I E + + +S
Sbjct: 63 ILQERSRSVKPVAAITSLIVVPTRELCRQLEDVLLAIIKEFSSNAFTISCAAIYLGENSS 122
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
L P+I+I+TP + + G + K+ V DEADL+ Y DL+A
Sbjct: 123 ADTITLRSMPEILISTPSLVMNLIKDGKISLKNIVQ----FVCDEADLIFDMDYGPDLEA 178
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264
L +P Q +SAT ++ + L L +P ++ L E + +++ + +Q
Sbjct: 179 LLEYLPASAQKFFLSATLDHKLESIVSLHLRSPKLIKLEEA---EQKLLTQPIQHLISLD 235
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
+ K + I L+KL+++Q +IF N++ A++LKLFL +FG K+ + N ELP ++R
Sbjct: 236 TTEKKYMLIYALIKLQILQGYIVIFVNSVTTAYKLKLFLHRFGQKTFLYNPELPVSTRQA 295
Query: 325 ILEEFNAGLFDYLIATDD-----TQTKEKDQSDEG---------GHVDSRKSKKHPKAKL 370
++E +N G LIA DD T+ K+ +DEG V +++ P A
Sbjct: 296 VIEGYNLGAEYVLIAVDDSIKDNTKDGAKNDNDEGVTSAQEVPNEAVAEEQTEHDPSASA 355
Query: 371 D-------------SEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYN-TGAS 416
+ E G+ RG+DF V V+NF+ P ++ YVHRIGRT R N G +
Sbjct: 356 ERKTPTPAPMPSAPKEAGIFRGLDFTRVDVVLNFDCPVSSINYVHRIGRTARGANPCGHA 415
Query: 417 VSLVSPDEMKIFEEIKSFVGDDENE-DSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIA 475
++++ D + I S + + E ++APF Q A+ES RYR DV S+T A
Sbjct: 416 ITIIHEDSKENRGVIASILREQREEFGKELLAPFQFNIQ-ALESFRYRVADVLHSLTPSA 474
Query: 476 VRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKD----LSKKPPASHLRDVPDYLL 531
++E R ++++EIL S+ L+ +F KDL L+K K ++ HL+ VP YLL
Sbjct: 475 IKEYRISEIKSEILASDALRKYFSQQSKDLALIKRIKTNPLIERQRQMTMHLKFVPSYLL 534
>gi|409081610|gb|EKM81969.1| hypothetical protein AGABI1DRAFT_105361 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 654
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 145/332 (43%), Positives = 204/332 (61%), Gaps = 27/332 (8%)
Query: 33 LDLRLVHALNKKGIQKPTLIQQASIPLIL-EGKDVVARAKTGSGKTFAYLLPLLHR-LFN 90
LD RL+ AL G +PTLIQ +IPL L E +D++ARA+TGSGKT AY LP++ + L
Sbjct: 21 LDARLLRALADMGFARPTLIQARAIPLALDEHRDILARARTGSGKTAAYCLPIIQKILLR 80
Query: 91 ESSPKSKLA----------PAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSS 140
+ K K AL+LVPTREL +QV S + + C V V+ + S
Sbjct: 81 KGKGKDKAVEDAGEGALNQTKALILVPTRELAEQVTSFLKGATKYCDKDVV--VINVASG 138
Query: 141 MPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYE 199
A R L+ PD+V+ATP + +LQ+K+ S +L LV+DEADL+LSYG++
Sbjct: 139 TTAHLQRLLLSDHPDVVVATPS-----RALALLQAKTLSLSALDTLVIDEADLILSYGHD 193
Query: 200 DDLKAL--SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNV 257
D++ + + +P+ Q LMSAT + DV+ LK + L NP IL L E +DE ++
Sbjct: 194 HDIRQIFSGSYLPKVHQSFLMSATMTEDVEMLKGITLRNPAILKLEEA---EDEA--ASL 248
Query: 258 QQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAEL 317
Q+ + CSE DK L +LKL+LV+ K ++F N +D +RLKLFLE+F IKS +LN+EL
Sbjct: 249 SQYAVQCSEVDKFLLTYVILKLKLVKGKCILFVNDVDRCYRLKLFLEQFSIKSCVLNSEL 308
Query: 318 PQNSRLHILEEFNAGLFDYLIATDDTQTKEKD 349
P NSR H ++EFN G++DY+IATD+ EKD
Sbjct: 309 PLNSRYHTVQEFNKGVYDYIIATDEGGLAEKD 340
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/204 (38%), Positives = 117/204 (57%), Gaps = 23/204 (11%)
Query: 345 TKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRI 404
TK++ + E V S K K KLD E+GV RG+DF +V V+NF++P + Y HR+
Sbjct: 403 TKKRIKQSEDQSVKSTKKSKRAN-KLDKEYGVTRGVDFVDVACVLNFDLPTSTRSYTHRV 461
Query: 405 GRTGRAYNTGASVSLVSP-----------------DEMKIFEEIKSFVGDDENEDSNIIA 447
GRT RA TG S+S V P ++ ++F+ I+ + + I
Sbjct: 462 GRTARAGRTGMSLSFVIPSSEWGKNKVVGCLPNAQNDPRVFKRIEK----QQAARGSQIK 517
Query: 448 PFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDL 507
+ + VE+ RYR ED +SVT+ A++E+R ++L+NE+LNS+KLKA+FE NP DL+
Sbjct: 518 EYKFDMRQ-VEAFRYRMEDALRSVTRAAIKEARIKELKNELLNSDKLKAYFEDNPLDLEH 576
Query: 508 LKHDKDLSKKPPASHLRDVPDYLL 531
L+HDK L H++ +P YLL
Sbjct: 577 LRHDKALRPARVQPHMKHIPKYLL 600
>gi|426196845|gb|EKV46773.1| hypothetical protein AGABI2DRAFT_178983 [Agaricus bisporus var.
bisporus H97]
Length = 654
Score = 246 bits (628), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 144/332 (43%), Positives = 202/332 (60%), Gaps = 27/332 (8%)
Query: 33 LDLRLVHALNKKGIQKPTLIQQASIPLIL-EGKDVVARAKTGSGKTFAYLLPLLHR-LFN 90
LD RL+ AL G +PTLIQ +IPL L E +D++ARA+TGSGKT AY LP++ + L
Sbjct: 21 LDARLLRALADMGFARPTLIQARAIPLALDEHRDILARARTGSGKTAAYCLPIIQKILLR 80
Query: 91 ESSPKSKLA----------PAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSS 140
+ K K AL+LVPTREL +QV S + + C V V+ + S
Sbjct: 81 KGKGKDKAVEDAGEGALNQTKALILVPTRELAEQVTSFLKGATKYCDKDVV--VINVASG 138
Query: 141 MPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYE 199
A R L+ PD+V+ATP + +LQ+K+ S +L LV+DEADL+LSYG++
Sbjct: 139 TTAHLQRLLLSDHPDVVVATPS-----RALALLQAKTLSLSALDTLVIDEADLILSYGHD 193
Query: 200 DDLKAL--SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNV 257
D++ + + +P+ Q LMSAT + DV+ LK + L NP IL L E D ++
Sbjct: 194 HDIRQIFSCSYLPKVHQSFLMSATMTEDVEMLKGITLRNPAILKLEEAEDE-----AASL 248
Query: 258 QQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAEL 317
Q+ + CSE DK L +LKL+LV+ K ++F N +D +RLKLFLE+F IKS +LN+EL
Sbjct: 249 SQYAVQCSEVDKFLLTYVILKLKLVKGKCILFVNDVDRCYRLKLFLEQFSIKSCVLNSEL 308
Query: 318 PQNSRLHILEEFNAGLFDYLIATDDTQTKEKD 349
P NSR H ++EFN G++DY+IATD+ EKD
Sbjct: 309 PLNSRYHTVQEFNKGVYDYIIATDEGGLAEKD 340
Score = 138 bits (348), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 116/204 (56%), Gaps = 23/204 (11%)
Query: 345 TKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRI 404
TK++ + E V S K K KLD E+GV RG+DF +V V+NF++P + Y HR+
Sbjct: 403 TKKRIKQSEDQSVKSTKKSKRAN-KLDKEYGVTRGVDFVDVACVLNFDLPTSTRSYTHRV 461
Query: 405 GRTGRAYNTGASVSLVSP-----------------DEMKIFEEIKSFVGDDENEDSNIIA 447
GRT RA TG S+S V P ++ ++F+ I+ + + I
Sbjct: 462 GRTARAGRTGMSLSFVIPSSEWGKNKVVGCLPSAQNDPRVFKRIEK----QQAARGSQIK 517
Query: 448 PFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDL 507
+ VE+ RYR ED +SVT+ A++E+R ++L+NE+LNS+KLKA+FE NP DL+
Sbjct: 518 EYK-FDMRQVEAFRYRMEDALRSVTRAAIKEARIKELKNELLNSDKLKAYFEDNPLDLEH 576
Query: 508 LKHDKDLSKKPPASHLRDVPDYLL 531
L+HDK L H+R +P YLL
Sbjct: 577 LRHDKALRPARVQPHMRHIPKYLL 600
>gi|308159301|gb|EFO61842.1| ATP-dependent RNA helicase [Giardia lamblia P15]
Length = 616
Score = 238 bits (607), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 167/544 (30%), Positives = 271/544 (49%), Gaps = 48/544 (8%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
+E G+D RL AL G+ + IQ+ +IP L D++ ++ TGSGKT YL +LHR
Sbjct: 3 WESFGIDPRLCDALRNLGLYEALPIQKLAIPEALAHNDILCQSFTGSGKTVIYLTAILHR 62
Query: 88 LFNESS--PKSKLAPAALVLVPTRELCQQVYSEVMALI-ELCKGQVQLKVVQLTSSMPAS 144
+ E S KS A +L++VPTRELC+Q+ ++A+I E + + +S
Sbjct: 63 ILQERSRSVKSVAAITSLIVVPTRELCRQLEEVLLAIIKEFSSNAFTVTCAAIYLGENSS 122
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
L P+I+I+TP + + G + K+ V DEADL+ Y DL+A
Sbjct: 123 AETITLRSMPEILISTPSLVMNLIKDGKISLKNIVQ----FVCDEADLIFDMDYGPDLEA 178
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264
L +P Q +SAT ++ + L L +P ++ L E + +++ + VQ
Sbjct: 179 LLEYLPASAQKFFLSATLDQKLENIASLHLRSPKLVKLEET---EQKLLTQPVQHLISLD 235
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
+ K + I L+KL++++ +IF N++ A++LKLFL +FG K+ + N ELP ++R
Sbjct: 236 TTEKKYMLIYALIKLQILRGYIVIFVNSVTTAYKLKLFLHRFGQKTFLYNPELPVSTRQA 295
Query: 325 ILEEFNAGLFDYLIATDD---------TQTKEKD-------------QSDEGGHVDSRKS 362
++E +N G LIA DD T++ KD Q + V + +
Sbjct: 296 VIEGYNLGAEYVLIAVDDSIKDSVKDDTKSGTKDGTKGFDDKEAASVQEADNASVMTETA 355
Query: 363 KKHPKAKLDS---------EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYN- 412
P A + E G+ RG+DF V V+NF+ P ++ Y+HRIGRT R N
Sbjct: 356 GDDPNASTEKRTSAPSAPKEAGIFRGLDFTRVDVVLNFDCPVSSINYIHRIGRTARGANP 415
Query: 413 TGASVSLVSPDEMKIFEEIKSFVGDDENE-DSNIIAPFPLLAQNAVESLRYRAEDVAKSV 471
G +++++ D + + + E ++APF Q A+ES RYR DV +
Sbjct: 416 CGHAITIIHEDSKDNRDVVIDVLRVQREEFGKELLAPFQFNIQ-ALESFRYRVVDVLHGL 474
Query: 472 TKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKD----LSKKPPASHLRDVP 527
T +++E R +++ EIL S+ L+ +F KD+ L+K K ++ HL+ VP
Sbjct: 475 TPSSIKEYRLSEIKAEILASDSLRKYFSQQSKDMALIKRIKTNPLIERQRQMTMHLKFVP 534
Query: 528 DYLL 531
YLL
Sbjct: 535 SYLL 538
>gi|392589759|gb|EIW79089.1| ATP-dependent RNA helicase dbp9 [Coniophora puteana RWD-64-598 SS2]
Length = 658
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 136/328 (41%), Positives = 199/328 (60%), Gaps = 20/328 (6%)
Query: 33 LDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNES 92
LD R++ AL G +PTL+Q +IPL LEG+D++ARA+TGSGKT AY +P++ ++ N
Sbjct: 20 LDARILRALADMGFARPTLVQTKAIPLALEGRDILARARTGSGKTAAYAIPVVQKVLNAK 79
Query: 93 SP------KSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
S + +L +VLVPT+EL +QV + + L+ C+ V L V S
Sbjct: 80 SAWAAGDERGQLT-RVMVLVPTKELAEQVMACLRTLVAYCEKSVVL--VNAASGSETQLQ 136
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL- 205
R + PD+V++TP K L + SL+ LV+DEADL+LSYG+++D++ +
Sbjct: 137 RTMMVEKPDVVVSTPSRALKLLQS----KVLSLSSLESLVIDEADLILSYGHDEDIRQIF 192
Query: 206 -SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264
+P+ Q LMSAT + DV+ LK L L NP IL L E D + Q+ + C
Sbjct: 193 SGGYLPKVYQSFLMSATMTDDVEVLKGLALRNPAILKLEEGSDEA-----ALLSQYSVKC 247
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
SE DK L +LKL L++ K ++F N +D +RLKLFLE+F IKS +LN+ELP NSR H
Sbjct: 248 SEVDKFLLTYVILKLRLIKGKCILFVNDVDRCYRLKLFLEQFSIKSCVLNSELPLNSRYH 307
Query: 325 ILEEFNAGLFDYLIATDDTQTKEKDQSD 352
++EFN G++DY+IATD++ + + SD
Sbjct: 308 TVQEFNKGVYDYIIATDESNGQTEQDSD 335
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 84/217 (38%), Positives = 124/217 (57%), Gaps = 28/217 (12%)
Query: 360 RKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSL 419
RK+K+H D E+GV RG+DF +V V+NF++P +A Y HR+GRT RA +G ++S
Sbjct: 415 RKNKRH---NPDKEYGVTRGVDFVDVSCVLNFDLPASARSYTHRVGRTARAGRSGMALSF 471
Query: 420 VSPDE----MKIFEEIKSFVGD---------DENEDSNIIAPFPLLAQNAVESLRYRAED 466
V P E K+ + S GD D+ + + + + VE+ RYR ED
Sbjct: 472 VVPREEWGKNKVVGCVPSARGDGEVWARIERDQAARGSKVREYNFDMRQ-VEAFRYRMED 530
Query: 467 VAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDV 526
+SVT+ A++E+R ++L+ E+LNSEKLKAHFE NP DL+ L+HDK L SH++ V
Sbjct: 531 ALRSVTRSAIKEARVKELKTEMLNSEKLKAHFEDNPLDLEYLRHDKPLHPTRVQSHMKHV 590
Query: 527 PDYLLDAKTQEACKMVKLARAAMGNKN----SSRRQG 559
P YLL K+ + +GN+ S ++QG
Sbjct: 591 PKYLLP-------KIAPVTDGVVGNRTEAEASEQQQG 620
>gi|402589981|gb|EJW83912.1| DEAD/DEAH box helicase [Wuchereria bancrofti]
Length = 452
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 144/395 (36%), Positives = 230/395 (58%), Gaps = 29/395 (7%)
Query: 154 PDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGC 213
PD V++TPG + L + +S+K +VLDEADLLLS+GY ++++ + +P
Sbjct: 21 PDFVVSTPGRLLHALK----KYGKPCESVKHVVLDEADLLLSFGYAEEMRLIKDFLPTHH 76
Query: 214 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ--QFWISC-SERDKL 270
Q + SAT + +V+ LK+L + +L +K+ +P + Q Q+ ISC +E ++
Sbjct: 77 QTIFTSATMTENVEALKELYVTGSIVLM-----KLKEGQLPSSDQLSQYHISCQNEEERF 131
Query: 271 LYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 330
L LLKL+L+ K++IF D ++L LFL+ F I+S ILNA++P NSR H++E+FN
Sbjct: 132 AIFLALLKLKLIVGKSIIFVKDTDRCYQLGLFLQAFNIRSCILNAQMPINSRCHVVEQFN 191
Query: 331 AGLFDYLIATD------DTQTKEKDQSDEG-------GHVDSRKSKKHPKAKLDSEFGVV 377
G + Y+IA+D ++Q KD+ DE ++ +K K + +D E GV
Sbjct: 192 EGRYSYVIASDINDVSGESQAVMKDEDDEDVCHNFIFRYLKRKKIHKKKRKHIDKESGVS 251
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RGIDF +V VINF+ P + Y+HR+GRT R +N G ++S SP E EE++ +
Sbjct: 252 RGIDFHHVANVINFDFPTSLNSYIHRVGRTARGWNKGNALSFASPQEKPFLEEVQEEINA 311
Query: 438 DENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAH 497
+ I P+ + + +ES RA +V + TK A+RE+R ++R EIL S++L+A+
Sbjct: 312 QLGHRA--ITPYEVRIKE-LESFVLRAREVLAACTKTAIREARLAEIRAEILRSKRLEAY 368
Query: 498 FEVNPKDLDLLKHDKDL-SKKPPASHLRDVPDYLL 531
F NP++ L+HDK L S + + DVPDY++
Sbjct: 369 FAKNPRERAALEHDKKLFSVNLHSPAIADVPDYMV 403
>gi|294894908|ref|XP_002775012.1| ATP-dependent RNA helicase HAS1, putative [Perkinsus marinus ATCC
50983]
gi|239880795|gb|EER06828.1| ATP-dependent RNA helicase HAS1, putative [Perkinsus marinus ATCC
50983]
Length = 590
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 194/579 (33%), Positives = 284/579 (49%), Gaps = 109/579 (18%)
Query: 29 EELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRL 88
E+ G+D R+ ALNK ++P L+Q +IP +LE KDV+ +A+TG GKT AY++PLL +L
Sbjct: 36 EKHGIDRRISKALNKLQFERPALVQSRAIPPVLESKDVLVKARTGCGKTIAYVVPLLQQL 95
Query: 89 FNESSPK--SKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
++PK S+ A VLVPT+ELC QV V +L+ V+
Sbjct: 96 L-ATAPKSGSRHPLTAFVLVPTKELCVQVNQVVNSLLHYA-----FDVISCDMHTTTHPY 149
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQS-KSFSDSLKILVLDEADLLLSYGYEDDLKAL 205
R AL P I++ TP CLS VL+S K ++K LV+DEADL+LSYGYE+D+K +
Sbjct: 150 RKAL---PTILVCTPAA---CLS--VLKSRKDLGPTIKHLVIDEADLMLSYGYEEDIKGV 201
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEV--GDVKDEVIPKNVQQFWIS 263
+ R QC+L+SAT + DV+ LK L LH P I+ L E G E +++QF++
Sbjct: 202 LGYLDR-YQCMLLSATLNDDVETLKGLCLHKPVIVKLEEAESGAAAGE---GHLKQFYLP 257
Query: 264 CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS-AILNAELPQNSR 322
+K L + LLKL+L+ K LIF ID A+R KL L+KF + S A+LN ELP SR
Sbjct: 258 LRPDEKYLVVYGLLKLKLLVGKTLIFAKDIDSAYRYKLLLDKFSMGSVAVLNYELPFLSR 317
Query: 323 LHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDF 382
I+E FN D LIAT +Q+ G + E + RG+DF
Sbjct: 318 NQIIESFNMNAIDVLIAT--------NQAVSGSGAE--------------EQAIHRGLDF 355
Query: 383 KNVHTVINFEMPQNAAGYVHRIGRTGRA--YNTGASVSLVSPDEMKIFEEIKSFVGDDEN 440
+V V+N +MP A YVHR+GRT RA G +V ++++
Sbjct: 356 VDVKAVLNADMPDTAREYVHRVGRTARACCIXXGTTVGHFGTEQLE-------------- 401
Query: 441 EDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEV 500
AV R +L E+L+S+K+K +
Sbjct: 402 ----------------------------------AVAALRQSELMREVLHSDKMKQQLQE 427
Query: 501 NPKDLDLLK-----HDKDLSKKPPASHLRDVPDYLLDA-------KTQEACKMVKLARAA 548
N +D L+ ++ ++ L+D+P+YL+ + + VKLA
Sbjct: 428 NTEDAKALRKSLRQNNAKVAGSTIKKSLKDLPEYLVPQSFLNSLDEDGDGSNPVKLAALG 487
Query: 549 MGNKNSSRRQGPRRKFRKSDPLKSFSAEPTKRAGKGRMK 587
GN ++ ++ SDPLK+F + KR G M+
Sbjct: 488 KGNSTDGKKGKGMKRKLSSDPLKTFEST-RKRLLTGSMR 525
>gi|25148205|ref|NP_740967.1| Protein C24H12.4, isoform b [Caenorhabditis elegans]
gi|351020853|emb|CCD62829.1| Protein C24H12.4, isoform b [Caenorhabditis elegans]
Length = 567
Score = 234 bits (598), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 154/496 (31%), Positives = 266/496 (53%), Gaps = 45/496 (9%)
Query: 98 LAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIV 157
+ P+A+++ PT+EL Q+Y ++L + L+ + L + + L +V
Sbjct: 95 VGPSAVIIAPTKELITQIYK---LFVKLSQALPFLQAINL-CDINEEENSVWLEDRSHVV 150
Query: 158 IATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLL 217
+ TPG K L L+ + + + LV+DEADLLLS+GYE+++ + + +P QCL+
Sbjct: 151 VTTPG---KLLRMCSLRPE-YCTLVSYLVMDEADLLLSFGYEEEMIKIRSKLPPTYQCLM 206
Query: 218 MSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC-SERDKLLYILTL 276
SAT D+ LKKL + P I GD+ + + Q+ ++C S+ ++ ++ +
Sbjct: 207 TSATLKDDMTTLKKLFMTGPVITIKLTEGDLPNS---DQLTQYQLTCGSDEERFAILVAM 263
Query: 277 LKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDY 336
KL+L+ ++++F NTID ++L L L FG+KS ILN+ +P NSR H++ +FN G +
Sbjct: 264 FKLKLIVGRSILFVNTIDRCYKLMLILRVFGLKSCILNSAMPANSRCHVINQFNEGSYQI 323
Query: 337 LIAT-----DDTQTKEK--DQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVI 389
+IA+ D ++ KE+ +SDE D +K KK +KLD E GV RGIDF +V V+
Sbjct: 324 VIASDVSDADGSKLKEEIAGKSDEKPEKDEKKGKK--ASKLDKESGVSRGIDFHHVSNVV 381
Query: 390 NFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPF 449
NF+ P+ Y+HR+GRT R +N G ++S P E E+I+ + ++ ++ P+
Sbjct: 382 NFDFPETTDAYIHRVGRTARGFNKGTALSFCIPSERAHLEQIQEEI--NQQMGRKVLQPY 439
Query: 450 PLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLK 509
+ +++ R + TK ++++R +++R E++ S L+ F N ++ L++
Sbjct: 440 EFRIKE-LDTFLLRTREALSKCTKGVIKKARLKEIRQELMRSANLQTFFAKNEREKLLMQ 498
Query: 510 ---HDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLA-------RAAMGNKNSSRRQG 559
H L PA + DV Y++ EA + + + R MG K+ RQ
Sbjct: 499 TDCHPVMLKINSPA--IADVTSYMVP----EALRGMDFSAPGAKNRRYNMGQKH---RQK 549
Query: 560 PRRKFRK--SDPLKSF 573
+ KF+K DPLK+F
Sbjct: 550 LKHKFQKKGKDPLKTF 565
>gi|159111504|ref|XP_001705983.1| ATP-dependent RNA helicase [Giardia lamblia ATCC 50803]
gi|157434075|gb|EDO78309.1| ATP-dependent RNA helicase [Giardia lamblia ATCC 50803]
Length = 616
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 168/544 (30%), Positives = 268/544 (49%), Gaps = 48/544 (8%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
+E G+D RL AL G+ + IQ+ +IP L D++ ++ TGSGKT YL +LHR
Sbjct: 3 WESFGIDPRLCDALRNLGLYEALPIQKLAIPEALAHNDILCQSFTGSGKTVIYLTAILHR 62
Query: 88 LFN--ESSPKSKLAPAALVLVPTRELCQQVYSEVMALI-ELCKGQVQLKVVQLTSSMPAS 144
+ S K A AL++VPTRELC+Q+ ++A+I E + + +S
Sbjct: 63 ILQGRSRSVKPMAAITALIVVPTRELCRQLEEVLLAIIKEFSSNAFTVTCAAIYLGENSS 122
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
L P+I+I+TP + + + K+ V DEADL+ Y DL+A
Sbjct: 123 AEAITLRSMPEILISTPSLVMNLIKDSKISLKNIVQ----FVCDEADLIFDMDYGPDLEA 178
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264
L +P Q +SAT ++ + L L +P ++ L E + +++ + VQ
Sbjct: 179 LLEYLPASAQKFFLSATLDQKLENIVNLHLRSPKLIKLEET---EQKLLTQPVQHLISLD 235
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
+ K + I L+KL++++ +IF N++ A++LKLFL +FG K+ + N ELP ++R
Sbjct: 236 TTEKKYMLIYALVKLQILRGYIVIFVNSVTTAYKLKLFLYRFGQKAFLYNPELPVSTRQA 295
Query: 325 ILEEFNAGLFDYLIATDDT---------------QTKEKDQSDEGG-------------- 355
++E +N G LIA DD+ TK D + G
Sbjct: 296 VIEGYNLGAEYVLIAVDDSIRDSAKDDTKSDTKDGTKASDNKETEGVQEADSSSMATKAA 355
Query: 356 -HVDSRKSKKHPKAKLDS-EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYN- 412
H S ++K A S E G+ RG+DF V V+NF+ P ++ Y+HRIGRT R N
Sbjct: 356 EHDPSTPAEKQASAPSASKEAGIFRGLDFTRVDVVLNFDCPVSSINYIHRIGRTARGANP 415
Query: 413 TGASVSLVSPDEMKIFEEIKSFV-GDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSV 471
G +++++ D + + + E ++APF Q A+ES RYR DV +
Sbjct: 416 CGHAITIIHEDSKDNRDVVLDVLRAQREEFGKELLAPFQFNIQ-ALESFRYRVVDVLHGL 474
Query: 472 TKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKD----LSKKPPASHLRDVP 527
T A++E R +++ EIL S+ L+ +F KD+ L+K K ++ HL+ VP
Sbjct: 475 TPSAIKEYRLSEIKAEILASDSLRKYFSQQSKDMALIKRIKTNPLIERQRQMTMHLKFVP 534
Query: 528 DYLL 531
YLL
Sbjct: 535 SYLL 538
>gi|85000803|ref|XP_955120.1| DEAD-box family (RNA) helicase [Theileria annulata strain Ankara]
gi|65303266|emb|CAI75644.1| DEAD-box family (RNA) helicase, putative [Theileria annulata]
Length = 566
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 172/572 (30%), Positives = 276/572 (48%), Gaps = 85/572 (14%)
Query: 1 MGKSKEIPSKEVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLI 60
M +S +I E E E+ +F + L+ L+ L + +K T +QQ +IP+I
Sbjct: 1 MMESSKIEEDPEDTMESSELADEDILTFGKSNLNSVLLENLLTR-FKKFTPVQQKAIPII 59
Query: 61 LEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVM 120
L G+DV+ +++TGSGKT A L+PLL+ L ++S S L+LVP+ +L QV +
Sbjct: 60 LSGRDVMIKSQTGSGKTLAALIPLLNSLLDKSGTFSPFDLKLLILVPSNDLINQVTDLLK 119
Query: 121 ALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD 180
L+ C ++ +K P ++L +L+ +IV+ P + L S
Sbjct: 120 ILLRKCSDRLSVK--------PLTELSNSLS---NIVVTKPSIAVELLK---------SQ 159
Query: 181 SLKILVLDEADLLLSYGYEDDLKALSAVIP-----RGCQCLLMSATSSSDVDKLKKLILH 235
L L++DEADLL +GY++D+ L ++ + Q +L+SAT ++ + L+L
Sbjct: 160 QLLYLIIDEADLLFEFGYKNDMLKLIEILRNSSKFKSFQSVLLSATLDPEIKNIANLLLF 219
Query: 236 NPYILTLPEVGDVKDEVIPK--NVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTI 293
P + +P PK NV+Q+++ +E KLL + LLK+E + ++IF NT
Sbjct: 220 KPVYIDVPYT--------PKLGNVKQYYVLVNEDAKLLNLYVLLKMECIPYGSIIFVNTN 271
Query: 294 DMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDE 353
+ L FL K + I++ L R IL+ FN GL LI DD D D
Sbjct: 272 KTGYYLYCFLRKLCLDINIISKLLSPKLRHTILQSFNQGLLGSLILIDD------DSED- 324
Query: 354 GGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNT 413
EF + RGIDFKNV+ VINF+ P++ Y HRIGRTGR Y +
Sbjct: 325 -------------------EFSLSRGIDFKNVNCVINFDQPKSLGIYKHRIGRTGRNYQS 365
Query: 414 GASVSLVSPDEMKIFE------------EIKSFVGDDENEDSNIIAPFPL--------LA 453
G+S++ + + ++ + ++K +G + NED N + L +
Sbjct: 366 GSSLTFFTNESDQLLQQLVFSGTVSKGSQLKEVIGSENNEDLNGVNEETLDSEIQEIKIG 425
Query: 454 QNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDL--DLLKHD 511
+ ES YR DV K +T V ++ Q +R+ + E+ + + N L +LK+D
Sbjct: 426 EEMFESFNYRINDVLKMITPKLVEIAQIQSVRHSAIEQEEFLKNVDENDMLLLKSVLKND 485
Query: 512 KDLSKKPPASHLRDVPDYLLDAKTQEACKMVK 543
L KP HL +P YL++ + Q VK
Sbjct: 486 NQLL-KPEKKHLTFIPSYLINNQLQSTIDTVK 516
>gi|302843754|ref|XP_002953418.1| hypothetical protein VOLCADRAFT_63761 [Volvox carteri f.
nagariensis]
gi|300261177|gb|EFJ45391.1| hypothetical protein VOLCADRAFT_63761 [Volvox carteri f.
nagariensis]
Length = 358
Score = 224 bits (572), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 162/410 (39%), Positives = 213/410 (51%), Gaps = 94/410 (22%)
Query: 23 EEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLL 82
+ SF++LGLD RL+ AL K+G KPT +Q +IP LEGKDVVARA+TGSGKT AYLL
Sbjct: 1 NQSMSFQDLGLDPRLLRALGKRGFTKPTPVQLEAIPRTLEGKDVVARARTGSGKTMAYLL 60
Query: 83 PLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMP 142
PLLH+L + + A+VLVPTRE LC+ Q+ ++ P
Sbjct: 61 PLLHKLLSTDNISGSFR--AIVLVPTRE--------------LCQ---QVGLLSFRPPAP 101
Query: 143 AS----DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGY 198
+ D + L PP S DS+++
Sbjct: 102 PTTNVRDSQHPLHSPP----------------------STHDSMRV-------------- 125
Query: 199 EDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEV------ 252
PR CQC+LMSAT S +V++L+KL+LHNP L L
Sbjct: 126 -----------PRSCQCILMSATVSEEVERLQKLVLHNPITLNLAGGPGGTGAPGAAEGG 174
Query: 253 ------------IPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLK 300
+ ++Q F+I C DKLL++L LL+L LV KK LIF NT+ RL+
Sbjct: 175 GEGRGGLASGSGVSADIQHFYIQCPRPDKLLHVLALLRLGLVPKKVLIFVNTVYEGVRLR 234
Query: 301 LFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSR 360
LFLE FG++ A+LN+ELP NSR HIL FN GLFDYLIATDD + + V
Sbjct: 235 LFLEAFGVRPALLNSELPLNSRSHILASFNKGLFDYLIATDDDAAAGGKKGRKKQKVLLG 294
Query: 361 KSKKHPK------AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRI 404
K+ K + A+ D+EFGV RGIDFK V TV+N++ P + GYVHR+
Sbjct: 295 KAGKAARGGENGGARKDAEFGVTRGIDFKGVRTVLNYDPPSSLQGYVHRV 344
>gi|340058667|emb|CCC53027.1| putative ATP-dependent RNA helicase [Trypanosoma vivax Y486]
Length = 596
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 186/612 (30%), Positives = 295/612 (48%), Gaps = 87/612 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
++ EL LD RL+ A+ + + PT +Q A IPL L+G+D+ +++TGSGKT A+L+P+L
Sbjct: 12 TWSELTLDERLLEAIKRLKWKAPTPVQGACIPLALKGRDLAIQSRTGSGKTGAFLVPILQ 71
Query: 87 RLFNE----SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMP 142
R+ E + ++ P LVL+P+ ELC+Q AL K +V V LTS
Sbjct: 72 RVITEQERLCNRRAVQNPVGLVLLPSEELCEQTVEVANALSRYIKPRV--TVNNLTSR-- 127
Query: 143 ASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 202
S +A LA P I++AT + K G + ++ L+ +V+DEADL++S E L
Sbjct: 128 DSITKARLASAP-ILVATAAALGKMCRNGTVTAEDMR-PLRCVVIDEADLMMSIA-ESSL 184
Query: 203 KALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL--------PEVGDVKDEVI- 253
+ + ++IP Q +L SAT + +V +K +LHNP +TL P GD + ++
Sbjct: 185 RTVQSLIPPSTQTILASATLTDEVAHIKGQLLHNPVTITLDNEEDGSSPPGGDNTENIVL 244
Query: 254 -------------PKNVQQFWISCSE--RDKLLYILTLLKLELVQKKALIFTNTIDMAFR 298
K + ++ E R LLY L +L + K LIF N+ D ++
Sbjct: 245 ETRVTVRGGDSKGGKLSHHYLVATDECHRHTLLY--ALFRLGHIDGKTLIFVNSEDSTYK 302
Query: 299 LKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDT-----------QTKE 347
L+ FL + GI+S + ++ LP N RL+ L F G LI TD T +
Sbjct: 303 LQSFLAQLGIESLVYDSSLPMNVRLNALHSFQTGTVGALICTDGTLENMDRLRDGAEVVS 362
Query: 348 KDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVI---NFEMPQNAA--GYVH 402
+ Q+ E G +R K L + + RGIDF +V+ VI F P +A Y H
Sbjct: 363 ESQAGEVGQGMAR--GKSVTYNLKNAGTLHRGIDFSDVNNVILFDGFSAPTTSAFSRYTH 420
Query: 403 RIGRTGRAYNTGASVSLVSPDEMK-IFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLR 461
R GR GR G +++ S + K + ++ ++G + F + ++ L+
Sbjct: 421 RAGRAGRGGKDGIVITIFSLYQAKNVTRPLRDYLGGTH----DTFTAFKQMQRSQAAKLQ 476
Query: 462 YRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPA- 520
YR ++V S+T+ + R R + E+ S LK+H + KD +LK SK
Sbjct: 477 YRVDNVLASITRSSTRRQRVAAVATELTRSAYLKSHM--SEKDGTVLKRILSRSKGSTKC 534
Query: 521 -SHLRDVPDYLLDAKTQEA------CKMVKLARAAMGNKNSSR-----RQGPRRKFRKSD 568
+ + DVP Y+ + Q A CK V G +N+SR RQ R++ R D
Sbjct: 535 DTAVVDVPHYM---RIQGADSVRSYCKRV-------GARNASREGTATRQSKRKRSR--D 582
Query: 569 PLKSFSAEPTKR 580
P+ S ++ +R
Sbjct: 583 PVSSLTSALKRR 594
>gi|261334450|emb|CBH17444.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
gambiense DAL972]
Length = 601
Score = 222 bits (565), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 170/605 (28%), Positives = 290/605 (47%), Gaps = 64/605 (10%)
Query: 25 EKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPL 84
K++ ++ LD RLV A+ K + PT +Q A IPL ++G+D+ +++TG+GKT A+L+P+
Sbjct: 10 RKAWSDIALDSRLVEAIKKLKWKAPTPVQSACIPLAMKGRDLAIQSQTGTGKTGAFLIPV 69
Query: 85 LHRLFNES----SPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSS 140
+ R+ E+ ++ P AL+L+P+ ELC+Q AL K ++ V LTS
Sbjct: 70 IQRIITENERACGRRNAQNPVALILLPSEELCKQTVEVANALTRYVKPRI--IVNDLTSR 127
Query: 141 MPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYED 200
+ ++ A P I+++T + K G + S L+ +V+DEADL++S E
Sbjct: 128 VSTANALRLTAAP--ILVSTAASLGKLCRNGSVTSDDMK-PLRCVVIDEADLIMSIA-EG 183
Query: 201 DLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL-PEVGD-----------V 248
L+A+ +V+P Q +L SAT + V ++K +LHNP ++L P+ G+
Sbjct: 184 SLRAVQSVLPTSAQTILASATLTDGVAQIKGQLLHNPITVSLKPDDGEKEPTGCEGPVGA 243
Query: 249 KDEVIPKNV-------------QQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDM 295
+D V+ V + +S E + L +L ++ K L+F N+ D
Sbjct: 244 EDVVLESRVTVRGGAAAAGTLRHYYLVSTDECHHHTLLYALYRLGHIKGKTLVFVNSEDT 303
Query: 296 AFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDT-----QTKEKDQ 350
++L FL + GI + + ++ LP N R+ L F G L+ TD T + +
Sbjct: 304 TYKLHNFLAQLGINALVYDSNLPMNVRVDALRRFQTGKVGTLVCTDGTLESLDRMRGATD 363
Query: 351 SDEGGHVDSRKSKKHPKAKLDSEFG------VVRGIDFKNVHTVINFEMPQNAAG----- 399
DE + +S K K + G + RGIDF +V VI F+ NA
Sbjct: 364 GDEETTTSTPRSNSRGKRKSLAAGGDEGGSALHRGIDFSDVSNVILFDGVTNATTSDFSR 423
Query: 400 YVHRIGRTGRAYNTGASVSLVSPDEM-KIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVE 458
Y HR+GR GR G +++ ++ + K+ ++++ ++G APF L ++A
Sbjct: 424 YTHRVGRAGRGNKDGVAITFLTLHQARKVKQQLRDYLGGTFQS----FAPFKQLDRHAAS 479
Query: 459 SLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKP 518
L+YR ++V S+T+ + R R + E+ S L +H KD +LK SK
Sbjct: 480 RLQYRVDNVLASITRSSTRRQRVAAVAAELTRSAHLMSHM--GDKDSGVLKRILSRSKGD 537
Query: 519 PASH--LRDVPDYLLDAKTQEACKMVKLARAAMGNKNS-SRRQGPRRKFRKSDPLKSFSA 575
+ DVP+Y+ A + RA + + ++R P+ R DPL S ++
Sbjct: 538 TKCDQTVVDVPEYMRIKGADSAESYRRRVRAPKKHTTAVAKRSAPK---RSRDPLGSLTS 594
Query: 576 EPTKR 580
+R
Sbjct: 595 SLKRR 599
>gi|440799062|gb|ELR20123.1| DEAD/DEAH box helicase domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 762
Score = 221 bits (564), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 162/524 (30%), Positives = 259/524 (49%), Gaps = 79/524 (15%)
Query: 10 KEVKQA--EEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVV 67
K++K+A E+ E E + +SF +L L L+ A+ G +PT +Q +IP+ L+GKDV
Sbjct: 175 KQIKEAFFEKSETEGYQAESFLDLHLSRALLKAVANLGYDRPTPVQSQAIPIALQGKDVC 234
Query: 68 ARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCK 127
A A TGSGKT +++LP+L RL + K +A ++L PTREL Q +S + L +
Sbjct: 235 ASATTGSGKTASFVLPILERLIHRD--KRIMATRVVILTPTRELAIQCHSVIEKLAKFTD 292
Query: 128 GQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILV 186
L V L++ + AAL PDIV+ATPG + L ++SF+ +++ ILV
Sbjct: 293 ITACLVVGGLSNKVQ----EAALRRHPDIVVATPGRIIDHLRN----AQSFTLETVDILV 344
Query: 187 LDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL-PEV 245
LDEAD LLS G+ D+L+ + P Q LL SAT + +VD+L L L+ P + L P +
Sbjct: 345 LDEADRLLSLGFADELEQIIKFCPPNRQTLLFSATMTEEVDRLASLSLNRPVRVRLDPNM 404
Query: 246 GDVKDEVIPKNVQQFWISCSE-----RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLK 300
+ +QQ +I E RD +L L +K+ LIF A RLK
Sbjct: 405 R------VASGIQQEFIKIKEAREFDRDAMLLALCTRSF---KKRVLIFFRAKKEAHRLK 455
Query: 301 LFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSR 360
+ G+K+A L+ L QN RL LE+F G FDYL+ATD
Sbjct: 456 VIFGLAGLKAAELHGNLSQNQRLEALEKFRDGNFDYLLATD------------------- 496
Query: 361 KSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLV 420
RG+D + T+IN+ M + Y+HR+GRT R ++G SV+ +
Sbjct: 497 --------------LAARGLDILGIETIINYNMARTVESYIHRVGRTARWGHSGKSVTFI 542
Query: 421 SPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESR 480
S + K+F+EI ++ + +I P ++ R + + + +++I E
Sbjct: 543 SEQDRKVFKEI--MKSTNQKVSNRVIPP------KIIDQWREKIDSMKGDISQIFAMEYE 594
Query: 481 AQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLR 524
+ LR + + K + ++++H ++ +PP + +
Sbjct: 595 EKQLRLTQMEASKTQ----------NMIEHHDEIMSRPPRTWFQ 628
>gi|71657202|ref|XP_817120.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma cruzi strain CL
Brener]
gi|70882291|gb|EAN95269.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
Length = 592
Score = 221 bits (563), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 175/586 (29%), Positives = 296/586 (50%), Gaps = 54/586 (9%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
++ E+ LD R++ A+ + PT +Q A IPL L+G+D+ +++TGSGKT A+++P+L
Sbjct: 12 AWPEMALDSRILEAIKRVKWNLPTPVQGACIPLALKGRDLALQSRTGSGKTGAFVIPILQ 71
Query: 87 RLFNES----SPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMP 142
R+ E+ + ++ P AL+L+P+ ELC+Q V AL + K +V V LTS
Sbjct: 72 RVITETEKMCNRRTAKNPVALILLPSVELCEQTVEVVTALAKYVKPRV--VVDNLTSRGV 129
Query: 143 ASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 202
+ R A A P I++ T + K +G + ++ + +L+ +V+DE D ++S E L
Sbjct: 130 VTKARVA-AAP--ILVTTAALLGKLCRSGTVTAEDLA-TLRCVVIDEVDFVISIA-EGSL 184
Query: 203 KALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE---------VI 253
+A+ +V+P Q +L SAT + V +K +LHNP +TL GD +DE V+
Sbjct: 185 RAVQSVLPPSVQTILSSATLTDGVVHIKSQLLHNPVTITL-STGD-EDEMNPTEGENIVV 242
Query: 254 PKNVQQFWISCSERDKLLYIL------------TLLKLELVQKKALIFTNTIDMAFRLKL 301
+ + I+ ER + Y++ L +L ++ K LIF N + ++L+
Sbjct: 243 ESRITKKGINSEERLRHYYLVATEECHHHTLLYALYRLGHIKGKTLIFVNEEEKTYKLQS 302
Query: 302 FLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDT--QTKEKDQSDEGGHVDS 359
FL + G+++ + ++ LP N R+ L F G L+ TD T +S G +
Sbjct: 303 FLAQLGVEALVYDSNLPLNVRVDTLHRFQVGSVGTLVCTDGTLESVDNLQESIPGAEAQA 362
Query: 360 RK--SKKHPKAKLDSEFGVVRGIDFKNVHTVINFE---MPQNAA--GYVHRIGRTGRAYN 412
+ SKK + + + + RGIDF +V V+ F+ P +A Y HR+GR GRA
Sbjct: 363 TRMHSKKGKRTEDRHDGALQRGIDFSDVRNVVLFDGIAHPTTSAFSRYTHRVGRAGRAGK 422
Query: 413 TGASVSLVSPDE-MKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSV 471
+G +++L + + ++ ++ +G + PF L + L+YR ++V S+
Sbjct: 423 SGMAITLFTLQQAQRVTRHLRRHLGATH----DTFEPFKQLRRQEAAKLQYRVDNVLFSI 478
Query: 472 TKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPA--SHLRDVPDY 529
T+ + R R + E+ S LK+H + KD +L+ SKK + L DVP Y
Sbjct: 479 TRSSTRRQRISSVAAELTRSAYLKSHM--SQKDEAVLQRILSRSKKTTKCDTTLLDVPHY 536
Query: 530 LLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSFSA 575
+ A K K RA +K+SS Q PR + R DPL ++
Sbjct: 537 MHIEGADSAEKYRKRVRARTSSKSSSASQQPRTRSR--DPLSRVAS 580
>gi|71755317|ref|XP_828573.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70833959|gb|EAN79461.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
Length = 601
Score = 221 bits (562), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 168/604 (27%), Positives = 290/604 (48%), Gaps = 62/604 (10%)
Query: 25 EKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPL 84
K++ ++ LD RLV A+ K + PT +Q A IPL ++G+D+ +++TG+GKT A+L+P+
Sbjct: 10 RKAWSDIALDSRLVEAIKKLKWKAPTPVQSACIPLAMKGRDLAIQSQTGTGKTGAFLIPV 69
Query: 85 LHRLFNES----SPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSS 140
+ R+ E+ ++ P AL+L+P+ ELC+Q AL K ++ V LTS
Sbjct: 70 IQRIITENERACGRRNAQNPVALILLPSEELCKQTVEVANALTRYVKPRI--IVNDLTSR 127
Query: 141 MPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYED 200
+ ++ A P I+++T + K G + S L+ +V+DEADL++S E
Sbjct: 128 VSTANALRLTAAP--ILVSTAASLGKLCRNGSVTSDDMK-PLRCVVIDEADLIMSIA-EG 183
Query: 201 DLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL-PEVGD-----------V 248
L+A+ +V+P Q +L SAT + V ++K +LHNP ++L P+ G+
Sbjct: 184 SLRAVQSVLPTSAQTILASATLTDGVAQIKGQLLHNPITVSLKPDDGEKEPTGCEGPVGA 243
Query: 249 KDEVIPKNV-------------QQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDM 295
+D V+ V + +S E + L +L ++ K L+F N+ D
Sbjct: 244 EDVVLESRVTVRGGAAAAGTLRHYYLVSTDECHHHTLLYALYRLGHIKGKTLVFVNSEDT 303
Query: 296 AFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDT-----QTKEKDQ 350
++L FL + GI + + ++ LP N R+ L F G L+ TD T + +
Sbjct: 304 TYKLHNFLAQLGINALVYDSNLPMNVRVDALRRFQTGKVGTLVCTDGTLESLDRMRGATD 363
Query: 351 SDEGGHVDSRKSKKHPKAKLDSEFG------VVRGIDFKNVHTVINFEMPQNAAG----- 399
DE + +S K K + G + RGIDF +V VI F+ NA
Sbjct: 364 GDEETTTSTPRSNSRGKRKSLAAGGDEGGSALHRGIDFSDVSNVILFDGVTNATTSDFSR 423
Query: 400 YVHRIGRTGRAYNTGASVSLVSPDEM-KIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVE 458
Y HR+GR GR G +++ ++ + K+ ++++ ++G APF L ++A
Sbjct: 424 YTHRVGRAGRGNKDGVAITFLTLHQARKVKQQLRDYLGGTFQS----FAPFKQLDRHAAS 479
Query: 459 SLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKP 518
L+YR ++V S+T+ + R R + E+ S L +H KD +LK SK
Sbjct: 480 RLQYRVDNVLASITRSSTRRQRVAAVAAELTRSAHLMSHM--GDKDSGVLKRILSRSKGD 537
Query: 519 PASH--LRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSFSAE 576
+ DVP+Y+ A + RA + + ++ +++ R DPL S ++
Sbjct: 538 TKCDQTVVDVPEYMRIKGADSAESYRRRVRAPKKHTTAVAKRSAQKRSR--DPLGSLTSS 595
Query: 577 PTKR 580
+R
Sbjct: 596 LKRR 599
>gi|399216115|emb|CCF72803.1| unnamed protein product [Babesia microti strain RI]
Length = 579
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 155/527 (29%), Positives = 254/527 (48%), Gaps = 78/527 (14%)
Query: 49 PTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPT 108
P +I+ +IP+IL G+DV+ R++TGSGKT A ++P++ L ++ + P AL+L PT
Sbjct: 16 PPIIEALAIPVILSGRDVLIRSRTGSGKTLAAIIPMVELLTSDGENADRQYPRALILAPT 75
Query: 109 RELCQQVYSEVMALIELCKGQVQLKVVQLTSS---------------MPASDLRA---AL 150
ELC Q+Y V +IE + + + VV+++ + D++A +
Sbjct: 76 SELCLQIYDVVSQVIEYLQDHLTV-VVKISHHSIVENVALGKRYKNLVEKYDIQAETEEI 134
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVI- 209
DI+I TP + + L LK L++DE D+L G+E++++ + ++
Sbjct: 135 DNFGDILICTPTSFIRDVKVANLHK-----YLKFLLIDEGDMLFLMGFEEEIEKIVKLLR 189
Query: 210 ----PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
+ Q +++SAT +VDKL +IL+ P ++ D+KDE+ + + I +
Sbjct: 190 PNAQTKSFQTVVLSATLDDNVDKLNGMILYKPKLI------DMKDEIKMGVLSELIIKVN 243
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
E DK L I L+ ++ K LIF NTI+ A+ LKL L I ++ L +R I
Sbjct: 244 ENDKFLIIYIFLRFSVLPMKCLIFVNTIERAYSLKLLLSGLQIDCVAISPILALETRSSI 303
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
+ FN G F LIA D KL +F + RGIDFK +
Sbjct: 304 INSFNKGTFKILIACPD--------------------------KLGGKFSLDRGIDFKGI 337
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNI 445
+N + P + YVHRIGRT RA + G +++ +S E+ F+ ++
Sbjct: 338 TCAVNLDAPHSDKDYVHRIGRTARAGSNGIALTFIS-------NEVDHFLLSRQD----- 385
Query: 446 IAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDL 505
+ L +E +RYR +DV ++VT A+ ++ Q + L S KLK +FE N D
Sbjct: 386 -IKYIELPLGVLEQMRYRFDDVMRNVTPNAISSAQLQAISKSALTSSKLKDYFETNRGDF 444
Query: 506 DLLK---HDKDLSKKPPASHLRDVPDYLL-DAKTQEACKMVKLARAA 548
D L+ D+ HL +P YLL +A T+ ++ K +
Sbjct: 445 DALQIYASQTDIKGVKDKKHLSLIPSYLLSEALTEHLAELRKFVYGS 491
>gi|332022664|gb|EGI62950.1| Putative ATP-dependent RNA helicase DDX56 [Acromyrmex echinatior]
Length = 323
Score = 218 bits (555), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 125/300 (41%), Positives = 186/300 (62%), Gaps = 9/300 (3%)
Query: 48 KPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVP 107
+PTLIQ IPL+LEGKD++ +A+TGSGKT A+++PL+ ++ + K L++ P
Sbjct: 2 EPTLIQDKVIPLLLEGKDLLIKARTGSGKTAAFVVPLIQKILINKRIQEKQEIKGLIIAP 61
Query: 108 TRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKC 167
++ELC+Q++ +++L C +V+ + L + + A L L PDIV+ TPG + +
Sbjct: 62 SKELCRQIHDVIVSLTTKCCREVRTIDLSLQTDLNAQKL--LLRDMPDIVVVTPGRLLQH 119
Query: 168 LSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVD 227
L L K SL L++DEADLL S+GYE DLKA+ A +P Q +L SAT S DV
Sbjct: 120 LKAKNLMLKH---SLDTLIIDEADLLFSFGYEKDLKAVLAYLPTVYQAVLASATLSEDVQ 176
Query: 228 KLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKAL 287
LKKLILHNP IL L E P + + ++ E DK + LLKL L++ K++
Sbjct: 177 SLKKLILHNPAILKLEEPPLAP----PTQLAHYTLAAEENDKAAILYALLKLHLIRGKSI 232
Query: 288 IFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKE 347
IF +T+D ++LKLFLE+FGI + +LN+ELP SR + +FN G +D +IA+D+ +E
Sbjct: 233 IFVHTVDRCYKLKLFLEQFGIPTCVLNSELPATSRCRAVSQFNNGTYDIIIASDEKILEE 292
>gi|169844029|ref|XP_001828736.1| ATP-dependent RNA helicase drs1 [Coprinopsis cinerea okayama7#130]
gi|116510107|gb|EAU93002.1| ATP-dependent RNA helicase drs1 [Coprinopsis cinerea okayama7#130]
Length = 754
Score = 213 bits (542), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 145/425 (34%), Positives = 214/425 (50%), Gaps = 48/425 (11%)
Query: 17 EEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGK 76
EE+ + +F ++ L ++ A++ G KPT IQ ++IP+ L GKD+V A TGSGK
Sbjct: 165 EEDGGSTTCDTFLQMNLSRPILKAISSLGFTKPTPIQASTIPVALLGKDIVGNAVTGSGK 224
Query: 77 TFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQ 136
T A+++P+L RL K A L+L+PTREL Q Y + + ++
Sbjct: 225 TAAFMIPMLERLLYREKGKRAAATRCLILLPTRELAVQCYE----VGKRLGAHTDIQFCL 280
Query: 137 LTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLS 195
L + AAL PD+V+ATPG L V S F+ DSL ILVLDEAD +LS
Sbjct: 281 LVGGLSLKAQEAALRQRPDVVLATPG----RLIDHVRNSVGFNLDSLDILVLDEADRMLS 336
Query: 196 YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK 255
G+ D+L + P+ Q +L SAT + VD+L K+ L+ P L + D K
Sbjct: 337 EGFADELTEIIKACPKSRQTMLFSATMTDSVDELIKMSLNKPVRLFV----DPKRSTARG 392
Query: 256 NVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNA 315
+Q+F E D+ ++ L K + + K +IF + +A ++++ G+K A L+
Sbjct: 393 LIQEFVRIRKESDRPAMLVALCK-QTYKHKVIIFVRSKKLAHQMRIVFSLLGMKCAELHG 451
Query: 316 ELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFG 375
+L Q RL L+ F G DYL+ATD L S
Sbjct: 452 DLSQEQRLQALQSFREGSVDYLMATD----------------------------LAS--- 480
Query: 376 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFE-EIKSF 434
RG+D K V TV+N++MP A Y+HR+GRT RA G SV+LV + K+ + IK
Sbjct: 481 --RGLDIKGVETVVNYDMPGQMAQYLHRVGRTARAGRKGKSVTLVGEADRKLLKAAIKHA 538
Query: 435 VGDDE 439
G+D+
Sbjct: 539 AGEDQ 543
>gi|302695203|ref|XP_003037280.1| hypothetical protein SCHCODRAFT_73122 [Schizophyllum commune H4-8]
gi|300110977|gb|EFJ02378.1| hypothetical protein SCHCODRAFT_73122 [Schizophyllum commune H4-8]
Length = 771
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 154/427 (36%), Positives = 211/427 (49%), Gaps = 48/427 (11%)
Query: 16 EEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSG 75
+ E E SF + L ++ AL G KPT IQ A+IP+ L GKDVV A TGSG
Sbjct: 169 DSESGAPAEHSSFLTMNLSRPILKALTTLGFTKPTPIQAATIPVALLGKDVVGNAVTGSG 228
Query: 76 KTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVV 135
KT A+ +P+L RL K A LVLVPTREL Q Y L +V L V
Sbjct: 229 KTAAFTIPMLERLLYREKGKKAAATRCLVLVPTRELAVQCYEVGKKLAAHTDIEVALIVG 288
Query: 136 QLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLL 194
L+ + LRA PDIVIATPG L + S SF+ D+L +LVLDEAD +L
Sbjct: 289 GLSLKSQEATLRAR----PDIVIATPG----RLIDHIHNSPSFTLDNLDVLVLDEADRML 340
Query: 195 SYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIP 254
S G+ D+L + P+ Q +L SAT + VD+L ++ L P L + D K
Sbjct: 341 SDGFADELTEIIKACPKSRQTMLFSATMTDSVDELVRMSLDKPVRLFV----DPKRSTAK 396
Query: 255 KNVQQFWISCSERDKLLY-ILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAIL 313
+Q+F + R+K +L L + + +IF + +A +L++ G+K L
Sbjct: 397 GLIQEFVRVRAGREKERSPLLVALCTRTFKTRVIIFVRSKKLAHQLRIVFGLVGLKCGEL 456
Query: 314 NAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSE 373
+ +L Q RL+ L++F G DYL+ATD L S
Sbjct: 457 HGDLSQEQRLNALQQFRDGTVDYLMATD----------------------------LAS- 487
Query: 374 FGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFE-EIK 432
RG+D K V TVIN++MP A Y+HR+GRT RA G SV+LV + K+ + IK
Sbjct: 488 ----RGLDIKGVETVINYDMPGQLAQYLHRVGRTARAGKKGRSVTLVGEGDRKMLKAAIK 543
Query: 433 SFVGDDE 439
G D+
Sbjct: 544 HSTGQDQ 550
>gi|342185613|emb|CCC95097.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 598
Score = 213 bits (541), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 159/555 (28%), Positives = 274/555 (49%), Gaps = 66/555 (11%)
Query: 26 KSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLL 85
K++ ++ LD RLV A+ + PT +Q A IPL L+G+D++ +++TG+GKT A+L+P++
Sbjct: 11 KTWSDMALDDRLVEAVKRLKWSTPTPVQSACIPLALKGRDLMIQSRTGTGKTGAFLIPII 70
Query: 86 HRLFNES----SPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSM 141
R+ +S +S P AL+L+P+ ELC+Q AL K ++ V LT
Sbjct: 71 QRIITDSERVGGGRSTKCPLALILLPSEELCKQTVEVANALARYVKPRI--IVNDLTLRG 128
Query: 142 PASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDD 201
P + +R LA P IVI T + K +G + S+ L+ +V+DEADL++S E+
Sbjct: 129 PTTGMR--LAAAP-IVITTAAALGKLCRSGGVASEEL-KPLRCVVIDEADLIISIA-ENS 183
Query: 202 LKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL----------PEVGDVKDE 251
L+ + ++IP Q +L SAT + V +K +L NP ++L P + D ++
Sbjct: 184 LRLVQSLIPPSTQTILASATLTDGVVHVKGQLLRNPVTISLNPDNREPPGAPALADSENI 243
Query: 252 VIPKNV-------------QQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFR 298
V+ V + ++ E + L +L +Q K L+F N+ D ++
Sbjct: 244 VLESRVTVRGAGADGGKLSHYYLVATDECHHHTLLYALYRLGHIQGKTLVFVNSEDTTYK 303
Query: 299 LKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVD 358
L FLE+ G+ + + ++ LP N R+ L F G L+ TD T + DQ E G+V
Sbjct: 304 LHSFLEQLGVSALVYDSNLPMNVRIDALHRFQTGAVGTLVCTDGT-LECLDQLQEKGNVA 362
Query: 359 ----------SRKSKKHPKAKLDSEFGVV---RGIDFKNVHTVINFEMPQNAAG-----Y 400
+ K K+ + + G RGIDF +V VI F+ +A+ Y
Sbjct: 363 GSEVAEATTPNHKGKRKAISSCEGSPGASALHRGIDFSDVRNVILFDGVPSASNAAFSRY 422
Query: 401 VHRIGRTGRAYNTGASVSLVSPDEM-KIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVES 459
HR+GR R G +++ ++ + K+ + ++ ++G + APF + + +
Sbjct: 423 THRVGRAARGNKDGMAITFLTLHQARKVKQPLREYLGGKFSS----FAPFKQMDRGSASR 478
Query: 460 LRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLK----HDKDLS 515
L+YR ++V S+T+ + R R + E+ S L +H + KD +L+ K ++
Sbjct: 479 LQYRVDNVLASITRSSTRRQRVAAVAAELTRSAYLTSHM--SDKDGAVLQRIISRTKGMT 536
Query: 516 KKPPASHLRDVPDYL 530
K L DVP+Y+
Sbjct: 537 KCDKT--LTDVPEYM 549
>gi|298706016|emb|CBJ29130.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 944
Score = 212 bits (540), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 152/494 (30%), Positives = 238/494 (48%), Gaps = 66/494 (13%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F++L + L+ A+ G PT +QQ ++P L G+DV A A TGSGKT A+LLP+L R
Sbjct: 309 FQQLNISRPLLRAVEAMGYVTPTSVQQRAVPFALAGRDVCASATTGSGKTAAFLLPILER 368
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
L PK +++ PTREL Q++S +L + L VV ++ A +
Sbjct: 369 LLYR--PKKVAVTRVMIITPTRELGVQIHSMCRSLSQFTDIACAL-VVGGNKNLKAQE-- 423
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
A L PDIVI TPG M L+ + D ++ILVLDEAD LL G+++++ L
Sbjct: 424 AELRARPDIVICTPGRMVDHLTN---SASVHMDDVEILVLDEADRLLELGFQEEVAELVK 480
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWI---SC 264
P G Q LL SAT ++ VD L L L+ P + + P+ + Q ++
Sbjct: 481 SCPIGRQTLLFSATMNTKVDDLASLALNKPVRVKASPMNSA-----PQRLVQEFVRIRQS 535
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
E+D+ +L+LL + K ++F +T +A RL + L GI++A L+ L RL
Sbjct: 536 REQDREAILLSLL-TRTFKTKTIVFFDTKILAHRLNIVLGIAGIRAAELHGNLAMTQRLE 594
Query: 325 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 384
L+ F +G L+ATD RG+D
Sbjct: 595 ALDRFKSGDVTVLVATDL---------------------------------AARGLDITG 621
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSN 444
VHTVINFEMP++A Y+HR+GRT RA G SV+L+ + +E+ G+ S
Sbjct: 622 VHTVINFEMPRSADSYIHRVGRTARAGCGGRSVTLIGESRRIVMKEVLKTQGEGVEIKSR 681
Query: 445 IIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKD 504
+ Q+A++ R + E + SV I E ++ R ++ +++
Sbjct: 682 AV------PQSAIDHFRSKIEGMEASVKAILTEEKVEKEERCAMMEADRA---------- 725
Query: 505 LDLLKHDKDLSKKP 518
++L++H K++ +P
Sbjct: 726 VNLVEHQKEIHARP 739
>gi|71027619|ref|XP_763453.1| ATP-dependent RNA helicase [Theileria parva strain Muguga]
gi|68350406|gb|EAN31170.1| ATP-dependent RNA helicase, putative [Theileria parva]
Length = 566
Score = 212 bits (539), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 172/572 (30%), Positives = 279/572 (48%), Gaps = 85/572 (14%)
Query: 1 MGKSKEIPSKEVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLI 60
M +S +I + E E E+ +F L+ L+ L + +K T IQQ +IP+I
Sbjct: 1 MMESSKIEEEPEDTLESSELADEDILTFGRSNLNPVLLENLLTR-FKKFTPIQQKAIPII 59
Query: 61 LEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVM 120
L G+DV+ +++TGSGKT A L+PLL+ L +SS + L+LVP+ +L QV +
Sbjct: 60 LSGRDVMIKSQTGSGKTLAALIPLLNSLLEKSSTFNPFDLKLLILVPSNDLINQVTDLLK 119
Query: 121 ALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD 180
L+ C ++ +K P ++L +L+ +IVI P + LS +
Sbjct: 120 VLLRKCSDRLSVK--------PLTELSNSLS---NIVITKPSIAVELLS---------NQ 159
Query: 181 SLKILVLDEADLLLSYGYEDDLKALSAVIP-----RGCQCLLMSATSSSDVDKLKKLILH 235
L L++DEADLL +GY++D+ L ++ + Q +L+SAT ++ + L+L+
Sbjct: 160 RLLYLIIDEADLLFEFGYKNDMVKLIEILRNSSKFKSFQSVLLSATLDPEIKNIANLLLY 219
Query: 236 NPYILTLPEVGDVKDEVIPK--NVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTI 293
P + +P PK NV+Q+++ +E +KLL + LLK+E + ++IF NT
Sbjct: 220 KPIYIDVPYT--------PKLGNVKQYYVLVNEDNKLLTLYLLLKMECIPYGSIIFVNTN 271
Query: 294 DMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDE 353
+ L FL K + I++ L R IL+ FN GL LI DD D D
Sbjct: 272 KTGYYLYCFLRKLCLDINIISKLLSPKLRHTILQSFNQGLLGSLILIDD------DSED- 324
Query: 354 GGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNT 413
EF + RGIDFKNV+ VINF+ P++ Y HRIGRTGR Y +
Sbjct: 325 -------------------EFSLSRGIDFKNVNCVINFDKPKSRGIYKHRIGRTGRNYQS 365
Query: 414 GASVSLVSPDEMKIFEEIKSFVGDDE-------NEDSNIIAPFPL-------------LA 453
G+S++ + + ++ ++ S +D+ NE N + + +
Sbjct: 366 GSSLTFFTNESDQLLRQLVSSSANDKDSHLEGVNEAENNLELNGVNEETLDSDVQEIKIG 425
Query: 454 QNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDL--DLLKHD 511
+ ES +YR DV K +T V ++ Q +R+ + E+ + + N L +LK+D
Sbjct: 426 EEIFESFKYRINDVLKMITPKLVEIAQIQSVRHSAIEQEEFLKNVDENDMLLLKSVLKND 485
Query: 512 KDLSKKPPASHLRDVPDYLLDAKTQEACKMVK 543
L KP HL +P+YL++ + Q VK
Sbjct: 486 NQL-LKPEKKHLTFIPNYLINNQLQSTIDSVK 516
>gi|392597372|gb|EIW86694.1| DEAD-domain-containing protein [Coniophora puteana RWD-64-598 SS2]
Length = 750
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 167/505 (33%), Positives = 244/505 (48%), Gaps = 85/505 (16%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF + L L AL G KPT IQ A+IP+ L GKD+V A TGSGKT A+++P+L
Sbjct: 179 SFLTMNLSRPLQKALTTLGFNKPTPIQVAAIPVALIGKDIVGNAVTGSGKTAAFVIPMLE 238
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
RL KS A L+LVPTREL Q Y L ++ L V L S+ + +
Sbjct: 239 RLLYREKGKSAAATRCLILVPTRELGVQCYEVAQKLAAYTDARIALVVGGL--SLKSQE- 295
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKAL 205
AAL PD+VIATPG L + S SF+ D+L ILVLDEAD +LS G+ D+L +
Sbjct: 296 -AALRTRPDVVIATPG----RLVDHIHNSPSFNLDALDILVLDEADRMLSEGFADELSEI 350
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
P+ Q +L SAT + VD+L K+ L+ P L + D + VQ+F +
Sbjct: 351 IKACPKSRQTMLFSATMTDSVDELVKMSLNKPVRLFV----DPRRTTARGLVQEFVRVRA 406
Query: 266 ERD-KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
E++ + +L L ++F + +A ++++ +K L+ +L Q RL
Sbjct: 407 EKETERSSLLVALCQRTFTSGVIVFFRSKKLAHQMRIIFRMLDMKCEELHGDLTQEQRLQ 466
Query: 325 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 384
L+ F G ++L+ATD L S RG+D K
Sbjct: 467 ALQLFRDGQVNFLMATD----------------------------LAS-----RGLDIKG 493
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSN 444
+ TVIN++MP AA Y+HR+GRT RA TG S++LV + K+ + + EN
Sbjct: 494 IETVINYDMPNQAAQYLHRVGRTARAGKTGRSLTLVGEADRKMLKSVIKHSASGEN---- 549
Query: 445 IIAPFPLLAQNAVESLRYR---AEDVAKSVTKIAVRESRAQDLRNEI---LNSEK----- 493
+R+R AE VAK +IA DL++EI L EK
Sbjct: 550 ---------------IRHRVVPAESVAKWSKRIA-------DLKDEISMVLQEEKEEKQI 587
Query: 494 LKAHFEVNPKDLDLLKHDKDLSKKP 518
+A E+ K +++ H+K++ +P
Sbjct: 588 RQAEMELK-KGKNMIDHEKEIFSRP 611
>gi|157962445|ref|YP_001502479.1| DEAD/DEAH box helicase [Shewanella pealeana ATCC 700345]
gi|157847445|gb|ABV87944.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
700345]
Length = 448
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 148/415 (35%), Positives = 214/415 (51%), Gaps = 49/415 (11%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F + LD RL+ +L GI PT IQ+ +IP+ L GKD++A +KTGSGKT A+LLP + R
Sbjct: 3 FTDFALDQRLLQSLKHMGIDTPTEIQEQAIPVALAGKDLMASSKTGSGKTLAFLLPAMQR 62
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
L + SK P ++L+PTREL QVYS++ L+ Q K ++ +D
Sbjct: 63 LIS-CKALSKRDPRVVILLPTRELATQVYSQLRLLV----ANTQFKATKILGGENFNDQA 117
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
AL+ P V+ATPG + L Q + L++L+LDEAD +L G+ + LK ++A
Sbjct: 118 KALSRDPHFVVATPGRLADHLK----QHHLHLNGLELLILDEADRMLDLGFAEQLKMINA 173
Query: 208 VIP-RGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
+ Q L+ SAT DV+ + +L P + + G+++ K++ Q C
Sbjct: 174 AADHKRRQTLMFSATLDHGDVNDIANELLKFPEHVAIG-AGNLEH----KDITQRIFLCD 228
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
D ILT + E QK+ +IFT T RL L G K+A L+ EL QN+R I
Sbjct: 229 HLDHKEAILTRILKEEQQKQIIIFTATRQDTDRLATKLAAEGFKTASLSGELKQNARNQI 288
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
++EF+ GL L+ TD V S RG+D NV
Sbjct: 289 MDEFSRGLQQILVTTD---------------VAS------------------RGLDLLNV 315
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDEN 440
VINF+MP+ A YVHRIGRTGRA G ++SLV P + F ++++F+ N
Sbjct: 316 SLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWINFTQVQTFLNKTFN 370
>gi|157869983|ref|XP_001683542.1| putative ATP-dependent RNA helicase [Leishmania major strain
Friedlin]
gi|68126608|emb|CAJ04058.1| putative ATP-dependent RNA helicase [Leishmania major strain
Friedlin]
Length = 605
Score = 209 bits (533), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 170/609 (27%), Positives = 285/609 (46%), Gaps = 71/609 (11%)
Query: 20 AEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFA 79
+EAE + + EL LD R++ AL ++PT +Q A +PL L+GKD+ +++TGSGKT A
Sbjct: 2 SEAEVQTEWSELLLDTRVLEALEDLAWKQPTAVQSACVPLALKGKDISIQSRTGSGKTGA 61
Query: 80 YLLPLLHRLFNESSPKSKLA----PAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVV 135
+++P + R+ E +S P L+LVP+ ELC+Q + + Q +L +
Sbjct: 62 FVIPAVQRIITEREQRSNARALPNPCVLILVPSVELCEQTAEAAQLIAKYV--QPRLAID 119
Query: 136 QLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLS 195
LTS + R A IVI T + K S G + + + +++ VLDEAD++ S
Sbjct: 120 NLTSGGAVTARRIQSA---HIVITTAALLAKGCSQGTVTADTL-QHVRLFVLDEADVVAS 175
Query: 196 YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNP--YILTLPEV-----GDV 248
E L+ + +++P Q +L SAT + V +K +L +P +LT +V GDV
Sbjct: 176 MA-ERSLRTVQSLLPPSMQVILASATLTKGVAAVKGQLLRHPVNVVLTSEDVEELVRGDV 234
Query: 249 KDEV-----------------IPKNVQQFW-ISCSERDKLLYILTLLKLELVQKKALIFT 290
+D + K + Q++ ++ E + L ++ L+ K LIF
Sbjct: 235 EDSAASQQGLVVESRVRVRDPLKKTLHQYYLVATDECHGHTLLFGLYRMALITGKTLIFV 294
Query: 291 NTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDT------- 343
N + +RL+ FLE+ G+ + +A LP N RL L F +G+ L+ TD T
Sbjct: 295 NDDEQTYRLQNFLEQLGVATLAYDANLPINVRLDTLRRFQSGMVSTLVCTDGTLESAMQL 354
Query: 344 -QTKEKDQSDEGGH----------VDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFE 392
+ E+ Q E G R + +A ++ + RGIDF +V V+ F+
Sbjct: 355 QASLEEPQPGEKGSDGQLWSSSSRRRPRSASVRGRANTEAPSALHRGIDFAHVRNVVLFD 414
Query: 393 M-----PQNAAGYVHRIGRTGRAYNTGASVSLVS-PDEMKIFEEIKSFVGDDENEDSNII 446
P + Y HRIGR GRA G S+++ + P K ++ + E ++I
Sbjct: 415 GVEATDPIALSRYTHRIGRAGRAGEEGVSIAIFTVPQARKYLRPLQEYC----RERGDVI 470
Query: 447 APFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLD 506
PF + + V L+YR + V ++T+ + R+ R + E+ S L H + KD D
Sbjct: 471 RPFRQMQRAEVAKLQYRVDSVLGNITRASTRKMRVASVAAELSRSSYLANHL--SQKDTD 528
Query: 507 LLKHDKDLSKK--PPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKF 564
L+ S K ++ +VP+Y+ + + K +A N R+ +
Sbjct: 529 ALQRVMRRSSKRIRVERNILEVPEYMHLSTADDVGAYRKRVQAKQTQSNRLRKATQK--- 585
Query: 565 RKSDPLKSF 573
+DPLK+
Sbjct: 586 ASADPLKAV 594
>gi|401422698|ref|XP_003875836.1| putative ATP-dependent RNA helicase [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322492076|emb|CBZ27350.1| putative ATP-dependent RNA helicase [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 605
Score = 209 bits (532), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 169/609 (27%), Positives = 286/609 (46%), Gaps = 71/609 (11%)
Query: 20 AEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFA 79
+EAE + + EL LD R++ AL +KPT +Q A +PL L+GKD+ +++TGSGKT A
Sbjct: 2 SEAEVQTEWSELPLDTRVLEALKDLAWKKPTAVQSACVPLALKGKDISIQSRTGSGKTGA 61
Query: 80 YLLPLLHRLFNE----SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVV 135
+++P + R+ E +P++ +P L++VP+ ELC+Q + + Q +L +
Sbjct: 62 FVIPAVQRIITEREQRGNPRALPSPRVLIVVPSVELCEQTAEAAHVIAKYV--QPRLVID 119
Query: 136 QLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLS 195
LTS + R A IVI T + K S G + + + ++ VLDEAD++ S
Sbjct: 120 NLTSGGAVTARRIQSA---HIVITTAALLAKGCSQGTVTADTL-QHVRFFVLDEADVVAS 175
Query: 196 YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNP--YILTLPEV-----GDV 248
E L+ + +++P Q +L SAT + V +K +L +P +LT +V D
Sbjct: 176 MA-ERSLRTVQSLLPPNMQVILASATLTKGVAAVKGQLLRHPVNVVLTSEDVEELVRSDG 234
Query: 249 KDEV-----------------IPKNVQQFW-ISCSERDKLLYILTLLKLELVQKKALIFT 290
KD + K + Q++ ++ E + L ++ L+ K LIF
Sbjct: 235 KDNAASQQGPVVESRVRVRDPLKKTLHQYYLVATDECHSHTLLFGLYRMALITGKTLIFV 294
Query: 291 NTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDT------- 343
N + +RL+ FLE+ G+ + +A LP N RL L F G+ L+ TD T
Sbjct: 295 NDDEQTYRLQNFLEQLGVATLAYDANLPINVRLDTLRRFQTGMASTLVCTDGTLENAMQL 354
Query: 344 -------QTKEKDQSDEGGHVDSRKSKKHP----KAKLDSEFGVVRGIDFKNVHTVINFE 392
Q EK + G SR+ + +A ++ + RGIDF +V V+ F+
Sbjct: 355 QASLEESQPGEKGSDGQSGSPSSRRRPRSASVCGRANTEAPSALHRGIDFAHVRNVVLFD 414
Query: 393 M-----PQNAAGYVHRIGRTGRAYNTGASVSLVS-PDEMKIFEEIKSFVGDDENEDSNII 446
P + Y HRIGR GRA G S+++ + P K ++ + E ++I
Sbjct: 415 GVEATDPIALSRYTHRIGRAGRAGEEGVSIAIFTVPQARKYLRPLQEYC----TERGDVI 470
Query: 447 APFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLD 506
PF + + V L+YR + V ++T+ + R+ R + E+ S L H + KD D
Sbjct: 471 RPFRQMQRAEVAKLQYRVDSVLGNITRTSTRKMRVASVAAELSRSSYLANHL--SQKDTD 528
Query: 507 LLKHDKDLSKK--PPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKF 564
L+ S K ++ +VP+Y+ + ++ + +A N R+ +
Sbjct: 529 ALQRVMRRSSKRIRVERNILEVPEYMHLSTAEDVGAYQRRVQAKQTQSNRLRKATQK--- 585
Query: 565 RKSDPLKSF 573
+DPLK+
Sbjct: 586 ASADPLKAV 594
>gi|167624613|ref|YP_001674907.1| DEAD/DEAH box helicase [Shewanella halifaxensis HAW-EB4]
gi|167354635|gb|ABZ77248.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
HAW-EB4]
Length = 458
Score = 209 bits (532), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 147/415 (35%), Positives = 208/415 (50%), Gaps = 49/415 (11%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F + LD RL+ +L GI PT IQ+ +IP+ L GKD++A +KTGSGKT A+LLP + R
Sbjct: 13 FTDFALDQRLLQSLKHMGIDTPTEIQEQAIPIALAGKDLMASSKTGSGKTLAFLLPAMQR 72
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
L + SK P ++L+PTREL QVYS++ L+ Q K ++ +D
Sbjct: 73 LIS-CKALSKRDPRVVILLPTRELATQVYSQLRLLV----ANTQFKATKILGGENFNDQA 127
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL-S 206
ALA P V+ATPG + L Q + L++L+LDEAD +L G+ + LK + +
Sbjct: 128 KALARDPHFVVATPGRLADHLK----QHHLHLNGLELLILDEADRMLDLGFAEQLKLINN 183
Query: 207 AVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
A + Q L+ SAT DV+ + +L P V + K++ Q C
Sbjct: 184 AADHKRRQTLMFSATLDHGDVNDIANELLKFP-----EHVAIGASNLEHKDITQRIFLCD 238
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
D ILT + E QK+ +IFT T RL L G K+A L+ EL QN+R I
Sbjct: 239 HLDHKEAILTRILKEEQQKQIIIFTATRQDTDRLATKLAAEGFKTASLSGELKQNARNQI 298
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
++EF+ GL L+ TD RG+D NV
Sbjct: 299 MDEFSRGLQQILVTTDVAS---------------------------------RGLDLLNV 325
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDEN 440
VINF+MP+ A YVHRIGRTGRA G ++SLV P + F ++++F+ N
Sbjct: 326 SLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWVNFTQVQTFLNKTFN 380
>gi|157374733|ref|YP_001473333.1| DEAD/DEAH box helicase [Shewanella sediminis HAW-EB3]
gi|157317107|gb|ABV36205.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
HAW-EB3]
Length = 465
Score = 209 bits (531), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 143/410 (34%), Positives = 221/410 (53%), Gaps = 49/410 (11%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F + LD RL+ L+ GI+KPT IQQ +IP+ L GKD++A +KTGSGKT A+LLP + R
Sbjct: 22 FTDFSLDTRLLKTLDHMGIEKPTEIQQQAIPVGLSGKDLMASSKTGSGKTLAFLLPAMQR 81
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+ + + SK P L+L+PTREL QVYS++ L+ Q K V++ +D
Sbjct: 82 IIS-TRALSKRDPRVLILLPTRELANQVYSQLRLLV----ANTQYKAVKILGGENFNDQA 136
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
+L P V+ATPG + L+ Q + L++L+LDEAD +L G+ D LKA++A
Sbjct: 137 KSLERDPHFVVATPGRLADHLA----QHHLHLNGLELLILDEADRMLDLGFVDQLKAINA 192
Query: 208 VIP-RGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
+ Q L+ SAT + ++++ +L +P +++ G++++ I Q+ ++S
Sbjct: 193 AADHKRRQTLMFSATLDHNKINEIAAELLKDPMHVSIG-AGNIENLDI---TQRIYLSDH 248
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
K + +LK E K+ +IFT T RL L + G +A L+ +L QN+R I
Sbjct: 249 LDHKEALLNHILKNE-KNKQVIIFTATRQDTDRLATKLAEAGFNTASLSGDLKQNARNQI 307
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
+++F+ GL D L+ TD RG+D NV
Sbjct: 308 MDQFSRGLQDILVTTDVAS---------------------------------RGLDLLNV 334
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
VINF+MP+ A YVHRIGRTGRA G ++SLV P + F++++ F+
Sbjct: 335 SLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWVNFKQVQVFL 384
>gi|449551073|gb|EMD42037.1| hypothetical protein CERSUDRAFT_129370 [Ceriporiopsis subvermispora
B]
Length = 794
Score = 207 bits (528), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 164/512 (32%), Positives = 244/512 (47%), Gaps = 85/512 (16%)
Query: 20 AEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFA 79
A +EE SF + L ++ +L G PT IQ A+IP+ L GKDVV A TGSGKT A
Sbjct: 202 APSEEHSSFLSMNLSRPIIKSLTTLGFNTPTPIQAATIPVALLGKDVVGNAVTGSGKTAA 261
Query: 80 YLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTS 139
+++P+L RL K A LVLVPTREL Q + L ++ +
Sbjct: 262 FIIPMLERLMYRDRGKKAAATRCLVLVPTRELAVQCFEVGTKLA----AHTDIRSCLVVG 317
Query: 140 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGY 198
+ A+L PD+VIATPG + L S +F+ ++L ILVLDEAD +L G+
Sbjct: 318 GLSLKAQEASLRTRPDVVIATPGRLIDHLRN----SPTFTLEALDILVLDEADRMLEDGF 373
Query: 199 EDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ 258
D+L + P Q +L SAT + VD+L ++ L+ P L + D K VQ
Sbjct: 374 SDELTEIIKSCPTSRQTMLFSATMTDTVDELVRMSLNKPVRLFV----DPKRTTARGLVQ 429
Query: 259 QF-WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAEL 317
+F + + + +L L + K++IF + +A ++++ G+KS L+ +L
Sbjct: 430 EFVRVRAGKEAERSALLAALCKRTFRTKSIIFFRSKKLAHQMRIVFSLLGMKSDELHGDL 489
Query: 318 PQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVV 377
Q RL L++F G DYL+ATD L S
Sbjct: 490 SQEQRLKALQQFRDGTVDYLMATD----------------------------LAS----- 516
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFE-EIKSFVG 436
RG+D K + TVIN++MP A Y+HR+GRT RA G SV+LV + K+ + IK G
Sbjct: 517 RGLDIKGIETVINYDMPGQLALYLHRVGRTARAGKKGRSVTLVGEADRKMLKAAIKHAAG 576
Query: 437 DDENEDSNIIAPFPLLAQNAVESLRYR---AEDVAKSVTKIAVRESRAQDLRN---EILN 490
+D+ +R+R AE +AK K+A L+N EIL
Sbjct: 577 EDQ--------------------VRHRQVPAEAIAKWSEKLA-------SLKNEISEILQ 609
Query: 491 SEKLKAHFEVNPKDL----DLLKHDKDLSKKP 518
EK + F +L +L++H++++ KP
Sbjct: 610 EEKEEKQFRQAEMELKKGQNLIEHEEEIYSKP 641
>gi|156083803|ref|XP_001609385.1| DEAD/DEAH box helicase [Babesia bovis T2Bo]
gi|154796636|gb|EDO05817.1| DEAD/DEAH box helicase, putative [Babesia bovis]
Length = 530
Score = 207 bits (528), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 151/494 (30%), Positives = 248/494 (50%), Gaps = 77/494 (15%)
Query: 50 TLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTR 109
T IQ+ +IPLIL GKDV+ +A+TGSGKT A L+P+ + L+ + LV++PT
Sbjct: 49 TDIQRKAIPLILSGKDVLIKAQTGSGKTLAALVPVANYLYESMRNIGEAQLVVLVVLPTT 108
Query: 110 ELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLS 169
EL Q + +L+E G V +K +S+ ++ A ++V++ P +
Sbjct: 109 ELVHQTVEVLSSLLE---GSVTVK-----ASLKNENIIA------NVVVSKP-------N 147
Query: 170 TGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP-----RGCQCLLMSATSSS 224
+ +K +LKI+VLDEADLL +G++ + L+ ++ + Q +L+SAT
Sbjct: 148 MALYHAKEHQATLKIVVLDEADLLFEFGFKSETLQLAEILRNFGRRKSFQTILLSATLDQ 207
Query: 225 DVDKLKKLILHNPYILTL---PEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLEL 281
V L LIL+ P + P +G +K +F++ +E DKLL++ L+K+E
Sbjct: 208 HVQNLANLILYKPLFVEAEYKPSMGCIK---------EFYVRLNEDDKLLFVYALIKMET 258
Query: 282 VQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 341
+ ALIFTN+ + A+++K L K ++S L+ L R +L FN G + LI D
Sbjct: 259 LPYPALIFTNSDERAYKIKTHLAKLSVESRALSRLLSPRMRQALLTSFNQGTINVLIVAD 318
Query: 342 DTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYV 401
D D+ D + RG+DFK V V+NF+ P ++ Y
Sbjct: 319 D------DRGD--------------------KLCATRGVDFKCVQCVLNFDAPTDSTTYT 352
Query: 402 HRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLR 461
HRIGRTGR G+S++ + +++ + E+++ GD + P + +++R
Sbjct: 353 HRIGRTGRMGRVGSSITFICDNDLPLLEDLQ---GDPSRHIQELDIP-----KGVFDTMR 404
Query: 462 YRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPA- 520
YR EDV K VTK V S+ Q LR+ L + + ++ +D LLK + +K
Sbjct: 405 YRVEDVGKGVTKRLVSTSQMQALRHSALLEDAFVTN--LSKRDEVLLKAVVENDEKRLGV 462
Query: 521 --SHLRDVPDYLLD 532
HL +P YL++
Sbjct: 463 EKRHLAHIPKYLVN 476
>gi|356504849|ref|XP_003521207.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 10-like [Glycine
max]
Length = 439
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 143/419 (34%), Positives = 210/419 (50%), Gaps = 55/419 (13%)
Query: 21 EAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAY 80
E EE K+F++LGL LV A K G + P IQ +IPL LEGKDV+ A+TGSGKT A+
Sbjct: 4 ENEETKTFKDLGLSESLVEACEKLGWKNPLKIQTEAIPLALEGKDVIGLAQTGSGKTGAF 63
Query: 81 LLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSS 140
LP+LH L PK A VL PTREL Q+ + AL ++ +K L
Sbjct: 64 ALPILHALLEAPRPKDFF---ACVLSPTRELAIQIAEQFEAL----GSEIGVKCAVLVGG 116
Query: 141 MPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS-LKILVLDEADLLLSYGYE 199
+ +A P I++ TPG + L +K FS S LK LVLDEAD LL+ +E
Sbjct: 117 IDMVQQSIKIAKQPHIIVGTPGRVIDHLK----HTKGFSLSRLKYLVLDEADRLLNEDFE 172
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
+ L + +IPR + L SAT + V KL+++ L NP + K + QQ
Sbjct: 173 ESLNEILQMIPRERRTFLFSATMTKKVQKLQRVCLRNPVKIE----ASSKYSTVDTLKQQ 228
Query: 260 F-WISCSERD-KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAEL 317
+ ++ +D L+YILT E+ +++FT T D L L L G+K+ +N +
Sbjct: 229 YRFLPAKHKDCYLVYILT----EMAGSTSMVFTRTCDATRLLALILRNLGLKAIPINGHM 284
Query: 318 PQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVV 377
Q+ RL L +F +G + L+ TD
Sbjct: 285 SQSKRLGALNKFKSGECNILLCTDVAS--------------------------------- 311
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
RG+D V VIN+++P N+ Y+HR+GRT RA +G ++SLV+ E++ + +I+ +G
Sbjct: 312 RGLDIPTVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIG 370
>gi|405958064|gb|EKC24228.1| Putative ATP-dependent RNA helicase DDX56 [Crassostrea gigas]
Length = 521
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 115/290 (39%), Positives = 175/290 (60%), Gaps = 25/290 (8%)
Query: 36 RLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN-ESSP 94
R + A+++ G +PT IQ+ +IPL L+GKD++ARA+TGSGKT A+ +P++ ++ + +
Sbjct: 98 RNLMAISQLGWSEPTPIQEKAIPLALDGKDILARARTGSGKTAAFCIPVIQKILTAKQTS 157
Query: 95 KSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPP 154
++ ALVL PT+ELC Q Y +M + V + LR L P
Sbjct: 158 STEQCVKALVLTPTKELCHQAYKNLMVYDSTYRVHVHI-------------LRPMLMEKP 204
Query: 155 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 214
DI++ATP + G L SL++L++DEADLL S+GYEDD++ + + +P+ Q
Sbjct: 205 DIIVATPTRALAHIKAGNL---DLRQSLELLIIDEADLLFSFGYEDDVRGILSNLPKIYQ 261
Query: 215 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ--QFWISCSERDKLLY 272
LMSAT S DV LK+++LHN IL L E +P+ Q Q+ I C E+DK
Sbjct: 262 AFLMSATLSEDVRALKRMVLHNAVILKLEE------SQLPEASQLTQYHIKCEEQDKFTL 315
Query: 273 ILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 322
+ L+KL L++ K++IF N ++ ++LKLFLE+F I + +LN+ELP NSR
Sbjct: 316 VYALMKLNLLRGKSIIFVNEVNRCYKLKLFLEQFAIPACVLNSELPVNSR 365
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 75/105 (71%), Gaps = 1/105 (0%)
Query: 22 AEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYL 81
+E+ SF E+GLD RL+ A+++ G +PT IQ+ +IPL L+GKD++ARA+TGSGKT A+
Sbjct: 2 SEDTLSFHEMGLDDRLLKAISQLGWSEPTPIQEKAIPLALDGKDILARARTGSGKTAAFC 61
Query: 82 LPLLHRLFN-ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIEL 125
+P++ ++ + + ++ ALVL PT+ELC Q Y +MA+ +L
Sbjct: 62 IPVIQKILTAKQTSSTEQCVKALVLTPTKELCHQAYRNLMAISQL 106
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 91/197 (46%), Gaps = 52/197 (26%)
Query: 388 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA 447
V+N E+P N+ RT R N G+++S VS +M +
Sbjct: 355 VLNSELPVNS--------RTARGDNQGSALSFVSVKDMDLL------------------- 387
Query: 448 PFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDL 507
ED + VTK A+RE+R ++++ E+L S KLK +FE NP+DL +
Sbjct: 388 ----------------GEDAMRMVTKTAIREARLKEIKQEMLASNKLKTYFEDNPRDLQV 431
Query: 508 LKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRR---KF 564
L+HDK L HL++VPDYL+ + M + + + +GP + K+
Sbjct: 432 LRHDKSLHTVKVQKHLKNVPDYLVPQTLRHMRGMSDKPGKSKARRKNMAPKGPTKAEIKY 491
Query: 565 ------RKSDPLKSFSA 575
RK+DPL+SF +
Sbjct: 492 KVGGNKRKADPLRSFES 508
>gi|171682130|ref|XP_001906008.1| hypothetical protein [Podospora anserina S mat+]
gi|170941024|emb|CAP66674.1| unnamed protein product [Podospora anserina S mat+]
Length = 320
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 118/282 (41%), Positives = 171/282 (60%), Gaps = 11/282 (3%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F ELGLD RLV A+ K G +KPTL+Q+ +IPL L G+DV+ +AKTGSGKT AY+LP+L
Sbjct: 45 FAELGLDPRLVQAVAKLGFEKPTLVQRRAIPLALNGEDVLCKAKTGSGKTAAYVLPVLQG 104
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+ + A L+LVPTREL QV+ + C V +LT ++ + R
Sbjct: 105 ILGRKKTDNTPTTAGLILVPTRELADQVHKAIEEFSAFCAKDV--TAAKLTENVSDAVQR 162
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
+ LA PD+V++TP K + +G L +L+ LVLDEADL+LSYGY++D++ L+
Sbjct: 163 SLLANVPDVVVSTPARAWKSVDSGALSVA----NLQYLVLDEADLVLSYGYDEDMENLAR 218
Query: 208 VIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
+P+G Q +MSAT S+++D LK + NP +L L E +DE + Q+++ E
Sbjct: 219 SMPKGVQTTMMSATLLSAELDTLKGIFCRNPTLLDLKEEFGEEDE----KLTQYYVRTGE 274
Query: 267 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGI 308
DK L + KL+L++ LIF ID ++RLKLF E+F I
Sbjct: 275 DDKWLITYLIFKLQLIKGPCLIFVADIDRSYRLKLFFEQFSI 316
>gi|401885525|gb|EJT49639.1| ATP-dependent RNA helicase [Trichosporon asahii var. asahii CBS
2479]
gi|406694842|gb|EKC98161.1| ATP-dependent RNA helicase [Trichosporon asahii var. asahii CBS
8904]
Length = 804
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 160/503 (31%), Positives = 246/503 (48%), Gaps = 67/503 (13%)
Query: 22 AEEEKS-----FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGK 76
A++EKS F + L L+ AL+ G PT IQ ++PL L G+D++ A TGSGK
Sbjct: 199 ADKEKSDLPTTFASMNLSRPLLRALSSLGFNAPTPIQSRAVPLALLGRDILGSAVTGSGK 258
Query: 77 TFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQ 136
T A+++P+L RL K A LVL PTREL Q AL E +G + ++
Sbjct: 259 TAAFMIPILERLQYRDRGKGGAACRVLVLCPTRELAVQCEQVGKALAE--RGGLDVRFAL 316
Query: 137 LTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLS 195
L + + AL PDI+IATPG + L+ + SF+ +L ILV+DEAD +L
Sbjct: 317 LVGGLSLNAQAHALRTLPDILIATPGRLIDHLTN----TPSFTLGALDILVIDEADRMLE 372
Query: 196 YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK 255
G+ D+L+ + PRG Q +L SAT + VD+L KL L P + + D +
Sbjct: 373 AGFTDELEEIVRQCPRGRQTMLFSATMTDSVDELVKLSLDRPVRVFV----DKERNTAAG 428
Query: 256 NVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNA 315
Q+F SE + +LTL K V +KA+IF + +A ++++ G+ +A L+
Sbjct: 429 LTQEFVRVRSEETRSPALLTLCK-RTVHEKAIIFFRSKALAHQMRVVFGLCGLVAAELHG 487
Query: 316 ELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFG 375
L Q RL L +F AG DYL+ATD
Sbjct: 488 NLTQEQRLVALNDFKAGRVDYLLATDLAS------------------------------- 516
Query: 376 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
RG+D K V TVIN++MP A YVHR+GRT RA G S+SLV + K+ + +
Sbjct: 517 --RGLDIKGVETVINYDMPGQLAQYVHRVGRTARAGRKGRSISLVGEPDRKMLKAVMKR- 573
Query: 436 GDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLK 495
D + II P AV+++ + +++ + ++ + E + LR +
Sbjct: 574 SDKDQIRHRIIPP------EAVQAMSAKLDELKEEISAVLAEEREEKLLR---------Q 618
Query: 496 AHFEVNPKDLDLLKHDKDLSKKP 518
A E+ K ++++H+ ++ +P
Sbjct: 619 ADMELR-KGQNMVEHEAEIYSRP 640
>gi|255544624|ref|XP_002513373.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223547281|gb|EEF48776.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 442
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 152/425 (35%), Positives = 213/425 (50%), Gaps = 61/425 (14%)
Query: 19 EAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTF 78
E E EE K+F+ELG+ +LV A + G + PT IQ SIP LEGKD++ A+TGSGKT
Sbjct: 2 EEEKEEVKTFKELGVCDQLVTACDNLGWKNPTKIQIESIPHALEGKDLIGLAQTGSGKTG 61
Query: 79 AYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLT 138
A+ LP+L L E+S KS A A VL PTREL Q+ + AL + +K L
Sbjct: 62 AFALPILQSLL-EASEKSVQAFFACVLSPTRELAIQIAEQFEAL----GSDIGVKCAVLV 116
Query: 139 SSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYG 197
+ AL P IV+ATPG + LS +K FS +LK LVLDEAD LL+
Sbjct: 117 GGVDMVQQSIALGKRPHIVVATPGRLVDHLS----NTKGFSLRTLKYLVLDEADRLLNED 172
Query: 198 YEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL----TLPEVGDVKDE-- 251
+E L + VIPR + L SAT + V KL++ L NP + V +K E
Sbjct: 173 FEKSLDEILKVIPRERRTFLFSATMTKKVKKLQRACLRNPVKIEAASKYSTVDTLKQEYR 232
Query: 252 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 311
IP + + L+YILT E +++FT T D L L L G+++
Sbjct: 233 FIPAKYKDCY--------LVYILT----EKSGSTSMVFTRTCDATTFLALVLRNLGLRAI 280
Query: 312 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLD 371
+N + Q+ RL L +F AG + LI TD
Sbjct: 281 PINGHMTQSKRLGALNKFKAGECNILICTDVAS--------------------------- 313
Query: 372 SEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 431
RG+D +V VIN+++P N+ Y+HR+GRT RA +G ++SLV+ E++ F +I
Sbjct: 314 ------RGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYEVEWFIQI 367
Query: 432 KSFVG 436
+ +G
Sbjct: 368 EKLIG 372
>gi|212557425|gb|ACJ29879.1| ATP-dependent RNA helicase, DEAD box family [Shewanella
piezotolerans WP3]
Length = 447
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 145/410 (35%), Positives = 213/410 (51%), Gaps = 49/410 (11%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F + LD RL+ L GI PT IQ+ +IP+ L GKD++A +KTGSGKT A+LLP + R
Sbjct: 3 FTDFSLDQRLLQTLKHMGIDTPTEIQEQAIPIALAGKDLMASSKTGSGKTLAFLLPAMQR 62
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+ + SK P A++L+PTREL QVYS++ L+ Q K ++ +D
Sbjct: 63 MIS-CKALSKRDPRAVILLPTRELATQVYSQLRLLV----ANTQFKATKILGGENFNDQA 117
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL-S 206
ALA P V+ATPG + L Q + L++L+ DEAD +L G+ + LK + +
Sbjct: 118 KALARDPHFVVATPGRLADHLK----QHHLHLNGLELLIFDEADRMLDLGFAEQLKQINN 173
Query: 207 AVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
A + Q L+ SAT DVD++ +L P + + G+++ K++ Q C
Sbjct: 174 AADHKRRQTLMFSATLDHGDVDEIAAELLKTPEHVAIG-AGNLEH----KDITQRIFLCD 228
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
D +L+ + + QK+ +IFT T RL L G K+A L+ EL Q++R I
Sbjct: 229 HLDHKEALLSRILKDEQQKQIIIFTATRQDTDRLAKKLADDGFKTASLSGELKQSARNQI 288
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
++EF+ GL L+ TD V S RG+D NV
Sbjct: 289 MDEFSRGLQQILVTTD---------------VAS------------------RGLDLLNV 315
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
VINF+MP+ A YVHRIGRTGRA G +VSLV P + F ++++F+
Sbjct: 316 SLVINFDMPKFAEEYVHRIGRTGRAGAKGDAVSLVGPKDWVNFTQVQTFL 365
>gi|113970779|ref|YP_734572.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
MR-4]
gi|113885463|gb|ABI39515.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
Length = 449
Score = 206 bits (523), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 142/410 (34%), Positives = 209/410 (50%), Gaps = 49/410 (11%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F + LD RL+ +L GI PT IQ+ ++P+ L GKD++A +KTGSGKT A+LLP L R
Sbjct: 3 FTDFSLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQR 62
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+ + + SK P L+L+PTREL QVYS++ L+ Q K + + +D
Sbjct: 63 VIS-TRALSKRDPRVLILLPTRELAHQVYSQLRLLV----ANTQYKAISVLGGENFNDQA 117
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
ALA P ++ATPG + L Q F + L++LVLDEAD +L G+ LKA++A
Sbjct: 118 KALAKEPHFIVATPGRIADHLE----QKNLFLNGLELLVLDEADRMLDLGFAPQLKAINA 173
Query: 208 VIP-RGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
+ Q L+ SAT S+++++ +L NP + +G E +++ Q C
Sbjct: 174 AADHKRRQTLMFSATLDHSEINEIAAALLKNPSHVA---IGAAHTE--HQDITQRIYLCD 228
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
D +LT L + K+ +IFT T RL L G +A L+ EL Q +R I
Sbjct: 229 HLDHKEALLTRLLSDETHKQVIIFTATRADTERLASKLSAQGFATAALSGELKQAARNQI 288
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
+++F G L+ TD RG+D NV
Sbjct: 289 MDQFARGQQQILVTTDVAS---------------------------------RGLDLLNV 315
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
VINF+MP+ A YVHRIGRTGRA G ++SLV P + F++++ F+
Sbjct: 316 SLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDNFKKVQLFL 365
>gi|114048006|ref|YP_738556.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
MR-7]
gi|113889448|gb|ABI43499.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
Length = 449
Score = 206 bits (523), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 142/410 (34%), Positives = 209/410 (50%), Gaps = 49/410 (11%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F + LD RL+ +L GI PT IQ+ ++P+ L GKD++A +KTGSGKT A+LLP L R
Sbjct: 3 FTDFSLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQR 62
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+ + + SK P L+L+PTREL QVYS++ L+ Q K + + +D
Sbjct: 63 VIS-TRALSKRDPRVLILLPTRELAHQVYSQLRLLV----ANTQYKAISVLGGENFNDQA 117
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
ALA P ++ATPG + L Q F + L++LVLDEAD +L G+ LKA++A
Sbjct: 118 KALAKEPHFIVATPGRIADHLE----QKNLFLNGLELLVLDEADRMLDLGFAPQLKAINA 173
Query: 208 VIP-RGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
+ Q L+ SAT S+++++ +L NP + +G E +++ Q C
Sbjct: 174 AADHKRRQTLMFSATLDHSEINEIAAALLKNPSHVA---IGAAHTE--HQDITQRIYLCD 228
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
D +LT L + K+ +IFT T RL L G +A L+ EL Q +R I
Sbjct: 229 HLDHKEALLTHLLSDETHKQVIIFTATRADTERLASKLSAQGFATAALSGELKQAARNQI 288
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
+++F G L+ TD RG+D NV
Sbjct: 289 MDQFARGQQQILVTTDVAS---------------------------------RGLDLLNV 315
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
VINF+MP+ A YVHRIGRTGRA G ++SLV P + F++++ F+
Sbjct: 316 SLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDNFKKVQLFL 365
>gi|336372365|gb|EGO00704.1| hypothetical protein SERLA73DRAFT_105076 [Serpula lacrymans var.
lacrymans S7.3]
Length = 681
Score = 205 bits (522), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 160/505 (31%), Positives = 243/505 (48%), Gaps = 63/505 (12%)
Query: 16 EEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSG 75
++E +E SF + L ++ AL G+ KPT IQ A++P+ L GKDVV A TGSG
Sbjct: 176 DDETRPSETHASFLTMNLSRPIIKALTTMGLHKPTPIQAAAVPVALLGKDVVGGAVTGSG 235
Query: 76 KTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVV 135
KT A+ +P++ RL K+ A LV+VPTREL Q + EV + G ++
Sbjct: 236 KTAAFTIPIIERLLYRDKGKNAAATRCLVVVPTRELAVQCF-EVGTRM---AGHTDVRFC 291
Query: 136 QLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLL 194
+ + AAL PD++IATPG + L S SF+ D+L ILVLDEAD +L
Sbjct: 292 LVVGGLSLKSQEAALRSRPDVLIATPGRLIDHLHN----SPSFTLDALDILVLDEADRML 347
Query: 195 SYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIP 254
G+ D+L + P Q +L SAT + VDKL +L L P + + D K +
Sbjct: 348 EDGFADELTEIVKACPVSRQTMLFSATMTDSVDKLIRLSLTKPVRIFV----DAKRSMAK 403
Query: 255 KNVQQFWISCSERDKLLYILTLLKLELVQK-KALIFTNTIDMAFRLKLFLEKFGIKSAIL 313
VQ+F E++K L L + K + ++F + +A ++++ +K L
Sbjct: 404 GLVQEFVRVRPEKEKERPALLLCICKRTFKTRVIVFFRSKKLAHQMRIVFGLLDMKCDEL 463
Query: 314 NAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSE 373
+ +L Q RL L+ F G DYL+ATD L S
Sbjct: 464 HGDLSQEQRLKALQAFRDGSVDYLMATD----------------------------LAS- 494
Query: 374 FGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKS 433
RG+D K + TVINF+MP A Y+HR+GRT RA TG SV+ V + K+ +++
Sbjct: 495 ----RGLDIKGIETVINFDMPSQLAQYLHRVGRTARAGKTGRSVTFVGEADRKM---LRA 547
Query: 434 FVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEK 493
V EDS ++ + V + E V + V+ I E + LR
Sbjct: 548 VVKHSAGEDS---VRHRVVPADVVSKWAQKFEQVKEEVSVILKEEKEEKQLR-------- 596
Query: 494 LKAHFEVNPKDLDLLKHDKDLSKKP 518
+A E+ K ++++H+K++ +P
Sbjct: 597 -QAEMELK-KGQNMIEHEKEIYSRP 619
>gi|91794376|ref|YP_564027.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
OS217]
gi|91716378|gb|ABE56304.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
OS217]
Length = 496
Score = 205 bits (522), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 144/415 (34%), Positives = 213/415 (51%), Gaps = 58/415 (13%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF LGL L+ A+ K+G PT IQ +IP +LEGKDV+A A+TG+GKT + LPLL
Sbjct: 2 SFSSLGLSAALLKAIAKQGYDTPTAIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLE 61
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
+ ++ P + ALVL PTREL QV V E + LK + +
Sbjct: 62 -ILSKGKPAQRGQVRALVLTPTRELAAQVADSV----ETYGHNLPLKSAVVFGGVSIVPQ 116
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
AAL DI++ATPG + L ++ SFS +L+ILVLDEAD +L G+ D++ +
Sbjct: 117 IAALKQGVDILVATPG---RLLDLCNQRALSFS-TLEILVLDEADRMLDMGFIRDIRKVL 172
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQFW 261
A++P+ Q L+ SAT S D+ +L K +++NP V+ V P+N V Q+
Sbjct: 173 AMLPKQRQNLMFSATFSDDIRELAKGLVNNP----------VEISVTPRNATANTVTQWV 222
Query: 262 ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 321
+ DK ++ L+K Q + L+F+ T A R+ LE IK+A ++ Q +
Sbjct: 223 TPVGQSDKTSVLIDLIKDNNWQ-QVLVFSRTKHGANRIAKNLEAASIKAAAIHGNKSQGA 281
Query: 322 RLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGID 381
R L +F AG ++ATD RGID
Sbjct: 282 RTKALADFKAGKVQVMVATDI---------------------------------AARGID 308
Query: 382 FKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
+ V+NF++P + YVHRIGRTGRA +G +VSLV+ +E+K+ +I+ +G
Sbjct: 309 IDQLPFVVNFDLPNVSEDYVHRIGRTGRAGASGQAVSLVADEEVKLLHDIERLIG 363
>gi|339898318|ref|XP_003392537.1| putative ATP-dependent RNA helicase [Leishmania infantum JPCM5]
gi|321399509|emb|CBZ08705.1| putative ATP-dependent RNA helicase [Leishmania infantum JPCM5]
Length = 605
Score = 205 bits (521), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 169/611 (27%), Positives = 282/611 (46%), Gaps = 75/611 (12%)
Query: 20 AEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFA 79
+EAE + + EL LD R++ AL +KPT +Q A +PL L+GKD+ +++TGSGKT A
Sbjct: 2 SEAEVQTEWSELPLDTRVLEALTDLAWKKPTAVQSACVPLALKGKDISIQSRTGSGKTGA 61
Query: 80 YLLPLLHRLFNESSPKSKLA----PAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVV 135
+++P + R+ E + P L+LVP+ ELC+Q + + Q +L +
Sbjct: 62 FVIPAVQRIITEREQRGNARALPNPRVLILVPSVELCEQTAEAAQLIAKYV--QPRLIID 119
Query: 136 QLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLS 195
LTS + R A IVI T + K S G + + +F ++ VLDEAD++ S
Sbjct: 120 NLTSGGAVTARRIQSA---HIVITTAALLAKGCSQGTVTADTF-QHVRFFVLDEADVVAS 175
Query: 196 YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNP--YILTLPEV-----GDV 248
E L+ + +++P Q +L SAT + V +K +L +P +LT +V GDV
Sbjct: 176 MA-ERSLRTVQSLLPPSMQVILASATLTKGVAAVKGQLLRHPVNVVLTSEDVEELARGDV 234
Query: 249 KDEV-----------------IPKNVQQFW-ISCSERDKLLYILTLLKLELVQKKALIFT 290
+D + K + Q++ ++ E + L ++ L+ K LIF
Sbjct: 235 EDSAASPQGPVVESRVRVRDPLKKTLHQYYLVATDECHSHTLLFGLYRMALITGKTLIFV 294
Query: 291 NTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQ 350
N + +RL+ FLE+ G+ + +A LP N RL L F +G+ L+ TD T E
Sbjct: 295 NDDEQTYRLQNFLEQLGVATLAYDANLPINVRLDTLRRFQSGMVSTLVCTDG--TLESAM 352
Query: 351 SDEGGHVDSRKSKK--------------------HPKAKLDSEFGVVRGIDFKNVHTVIN 390
+ + R +K +A ++ + RGIDF +V V+
Sbjct: 353 QLQASLEELRPGEKGSDGQSGSSSSRRRSRSASVCSRANTEAPSALHRGIDFAHVRNVVL 412
Query: 391 FEM-----PQNAAGYVHRIGRTGRAYNTGASVSLVS-PDEMKIFEEIKSFVGDDENEDSN 444
F+ P + Y+HRIGR GRA G S+++ + P K ++ + E +
Sbjct: 413 FDGVEATDPIALSRYIHRIGRAGRAGEEGVSIAIFTVPQARKYLRPLQEYC----TERGD 468
Query: 445 IIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKD 504
I PF + + V L+YR + V ++T+ + R+ R + E+ S L H + KD
Sbjct: 469 AIRPFRQMQRAEVAKLQYRVDSVLGNITRASTRKMRVASVAAELSRSSYLANHL--SQKD 526
Query: 505 LDLLKHDKDLSKK--PPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRR 562
D L+ S K ++ +VP+Y+ + + K +A N R+ +
Sbjct: 527 TDALQRVMRRSSKRIRVERNILEVPEYMHLSTADDVGAYRKRVQAKQTQSNRLRKATQK- 585
Query: 563 KFRKSDPLKSF 573
+DPLK+
Sbjct: 586 --ASADPLKAV 594
>gi|336311141|ref|ZP_08566108.1| ATP-dependent RNA helicase [Shewanella sp. HN-41]
gi|335865357|gb|EGM70383.1| ATP-dependent RNA helicase [Shewanella sp. HN-41]
Length = 449
Score = 205 bits (521), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 140/410 (34%), Positives = 207/410 (50%), Gaps = 49/410 (11%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F + LD RL+ +L GI PT IQ+ ++P+ L GKD++A +KTGSGKT A+LLP L R
Sbjct: 3 FTDFSLDQRLLQSLQHMGITAPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQR 62
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+ + + +K P L+L+PTREL QVYS++ L+ Q K + + +D
Sbjct: 63 VIS-TRALTKRDPRVLILLPTRELAHQVYSQLRLLV----ANTQYKAISVLGGENFNDQA 117
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS- 206
ALA P ++ATPG + L Q F + L++L+LDEAD +L G+ LKA++
Sbjct: 118 KALAKEPHFIVATPGRIADHLE----QKHLFLNGLELLILDEADRMLDLGFAPQLKAINE 173
Query: 207 AVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
A + Q L+ SAT S+++ + +L P + +G E ++ Q C
Sbjct: 174 AADHKRRQTLMFSATLDHSEINDIAATLLKKPAHVA---IGAAHSE--HNDIHQRIFLCD 228
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
D +LT L + K+ +IFT T RL L G +A L+ EL Q +R I
Sbjct: 229 HLDHKEALLTRLLQDEQHKQVIIFTATRPDTERLAAKLSAQGFATAALSGELKQTARNQI 288
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
+++F GL L+ TD RG+D NV
Sbjct: 289 MDQFGRGLQQVLVTTDVAS---------------------------------RGLDLLNV 315
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
VINF+MP+ A YVHRIGRTGRA G ++SLV P + F++++ F+
Sbjct: 316 SLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDNFKKVQVFL 365
>gi|345316817|ref|XP_001516951.2| PREDICTED: probable ATP-dependent RNA helicase DDX56-like
[Ornithorhynchus anatinus]
Length = 353
Score = 204 bits (520), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 122/281 (43%), Positives = 170/281 (60%), Gaps = 22/281 (7%)
Query: 157 VIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCL 216
V+ TP + L G L DSL++LV+DEADLL S+G+E++LK+L +PR Q
Sbjct: 27 VVGTPSRVHSHLQQGGL---VLRDSLELLVMDEADLLFSFGFEEELKSLLCHLPRIYQAF 83
Query: 217 LMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC-SERDKLLYILT 275
LMSAT + DV LK+L+LHNP L L E P+ +QQF + C +E DK L +
Sbjct: 84 LMSATFNEDVQALKELVLHNPVTLKLQE----SQLPGPERLQQFQVLCEAEEDKFLLLYA 139
Query: 276 LLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFD 335
LLKL L++ K+L+F NT++ ++RL+LFLE+F I + +LN ELP SR HI+ +FN G +D
Sbjct: 140 LLKLRLLRGKSLLFVNTVERSYRLRLFLEQFSIPACVLNGELPLRSRCHIISQFNQGFYD 199
Query: 336 YLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQ 395
+IATD +E+ +RK +K D E GV RGIDF NV V+NF++P
Sbjct: 200 CIIATDGVIRRER----------ARKGEK----ASDPEAGVARGIDFHNVAAVLNFDLPP 245
Query: 396 NAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
+ YVHR GRT RA N G +++ V P E I+ +G
Sbjct: 246 SPEAYVHRAGRTARADNPGTTLTFVLPAERPQLARIEETLG 286
>gi|409051554|gb|EKM61030.1| hypothetical protein PHACADRAFT_24252 [Phanerochaete carnosa
HHB-10118-sp]
Length = 793
Score = 204 bits (520), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 141/420 (33%), Positives = 208/420 (49%), Gaps = 48/420 (11%)
Query: 23 EEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLL 82
E+ SF + L ++ A+ KPT IQ A+IP+ L GKD+V A TGSGKT A+++
Sbjct: 191 EQHSSFMSMNLSRPVLKAIASLNFTKPTPIQAATIPVALLGKDIVGNAVTGSGKTAAFMI 250
Query: 83 PLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMP 142
P++ RL K A +VLVPTREL Q Y L ++ + +
Sbjct: 251 PMIERLMYRERGKKAAATRCMVLVPTRELGVQCYEVGTKLA----AHTDIRFCLVVGGLS 306
Query: 143 ASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDD 201
AL PDI+IATPG L + + +F+ D+L ILVLDEAD +LS G++D+
Sbjct: 307 LKSQEVALRTRPDIIIATPG----RLIDHIRNTPTFTLDTLDILVLDEADRMLSEGFQDE 362
Query: 202 LKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF- 260
L + P Q +L SAT + VD+L ++ L+ P L + D K +Q+F
Sbjct: 363 LAEIIKSCPVSRQTMLFSATMTDSVDELVRMSLNQPVRLFV----DPKRTTARGLLQEFV 418
Query: 261 WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 320
+ S+ D+ +L L + LIF + +A ++++ G+K++ L+ +L Q
Sbjct: 419 RVRASKEDERSALLVSLCKRTFKGGVLIFFRSKKLAHQMRIVFGLLGMKASELHGDLTQE 478
Query: 321 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 380
RL L+ F G DYL+ATD L S RG+
Sbjct: 479 QRLQALQAFREGSVDYLMATD----------------------------LAS-----RGL 505
Query: 381 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFE-EIKSFVGDDE 439
D K + TVIN++MP A Y+HR+GRT RA G SV+LV + KI + IK G+D+
Sbjct: 506 DIKGIDTVINYDMPGQVAQYLHRVGRTARAGKKGRSVTLVGEADRKILKAAIKHASGEDQ 565
>gi|403415272|emb|CCM01972.1| predicted protein [Fibroporia radiculosa]
Length = 782
Score = 204 bits (519), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 158/500 (31%), Positives = 240/500 (48%), Gaps = 67/500 (13%)
Query: 23 EEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLL 82
EE SF + L ++ ++ G KPT IQ A+IP+ L GKD+V A TGSGKT A+++
Sbjct: 190 EEHTSFLSMNLSRPIIKSITALGFNKPTPIQAATIPVALLGKDIVGNAVTGSGKTAAFII 249
Query: 83 PLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMP 142
P+L RL K A LVLVPTREL Q + L + L V L+
Sbjct: 250 PMLERLLYRDRGKKAAATRCLVLVPTRELGVQCFEVGTKLAAHTDIRFSLVVGGLSVKTQ 309
Query: 143 ASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDD 201
+ LR PD+VIATPG + L S +F+ D+L ILVLDEAD +LS G+ D+
Sbjct: 310 EATLRTR----PDVVIATPGRLIDHLRN----SPAFTLDALDILVLDEADRMLSDGFADE 361
Query: 202 LKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF- 260
L + P Q +L SAT + VD+L ++ L P L + D K VQ+F
Sbjct: 362 LTEIIKSCPMSRQTMLFSATMTDSVDELVRMSLDKPVRLFV----DPKRSTASGLVQEFV 417
Query: 261 -WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+ E ++ ++TL K + +A+IF + +A ++++ +K+ L+ +L Q
Sbjct: 418 RVRAGKESERSALLVTLCK-RTFKSRAIIFFRSKKLAHQMRIVFRLLDMKADELHGDLSQ 476
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
RL L++F G D+L+ATD L S RG
Sbjct: 477 EQRLKALQQFRDGAVDFLMATD----------------------------LAS-----RG 503
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFE-EIKSFVGDD 438
+D K + TVIN++MP A Y+HR+GRT RA G SV+LV + K+ + IK + +D
Sbjct: 504 LDIKGIETVINYDMPSQLAQYLHRVGRTARAGKKGRSVTLVGEADRKMLKASIKHAMAED 563
Query: 439 ENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHF 498
I AV + +D+ K + ++ E + LR +A
Sbjct: 564 SVRHRQI-------PPEAVAKWSAKLDDMKKEIAEVLQEEKEEKQLR---------QAEM 607
Query: 499 EVNPKDLDLLKHDKDLSKKP 518
EV K ++++H+ ++ +P
Sbjct: 608 EVK-KGQNMIEHEAEIFSRP 626
>gi|170727393|ref|YP_001761419.1| DEAD/DEAH box helicase [Shewanella woodyi ATCC 51908]
gi|169812740|gb|ACA87324.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
51908]
Length = 447
Score = 204 bits (519), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 137/410 (33%), Positives = 219/410 (53%), Gaps = 49/410 (11%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F E LD RL+ +L+ GI PT IQ+ +IP+ L GKD++A +KTGSGKT A+LLP + R
Sbjct: 3 FTEFSLDARLLQSLSHMGITTPTEIQEMAIPVGLSGKDLMASSKTGSGKTLAFLLPAMQR 62
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+ + + SK P L+L+PTREL QVYS++ L+ Q K +++ +D
Sbjct: 63 IIS-TKALSKRDPRVLILLPTRELANQVYSQLRLLV----ANTQYKALKILGGENFNDQA 117
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
ALA P V+ATPG + L+ Q + L++L+LDEAD +L G+ D LKA++A
Sbjct: 118 KALARDPHFVVATPGRLADHLA----QHHFHLNGLELLILDEADRMLDLGFADQLKAINA 173
Query: 208 VIP-RGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
+ Q L+ SAT + ++++++ +L +P + + +++++ I Q+ ++ C
Sbjct: 174 AADHKRRQTLMFSATLNHNEINEIASELLKDPKHVAVG-ASNIENQDI---TQKIYL-CD 228
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
D +L + QK+ +IFT T RL L + G +A L+ +L Q++R I
Sbjct: 229 HLDHKEALLQSILKRGEQKQVIIFTATRQDTDRLAKKLAEEGFNTASLSGDLNQSARNQI 288
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
+++F+ G+ D L+ TD RG+D NV
Sbjct: 289 MDQFSRGMQDILVTTDVAS---------------------------------RGLDLLNV 315
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
VINF+MP+ A YVHRIGRT RA G ++S V P + F++++ F+
Sbjct: 316 SLVINFDMPKFAEEYVHRIGRTARAGAKGDAISFVGPKDWVNFKQVQQFL 365
>gi|398015851|ref|XP_003861114.1| ATP-dependent RNA helicase, putative [Leishmania donovani]
gi|322499339|emb|CBZ34412.1| ATP-dependent RNA helicase, putative [Leishmania donovani]
Length = 605
Score = 204 bits (519), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 168/611 (27%), Positives = 282/611 (46%), Gaps = 75/611 (12%)
Query: 20 AEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFA 79
+EA+ + + EL LD R++ AL +KPT +Q A +PL L+GKD+ +++TGSGKT A
Sbjct: 2 SEADVQTEWSELPLDTRVLEALTDLAWKKPTAVQSACVPLALKGKDISIQSRTGSGKTGA 61
Query: 80 YLLPLLHRLFNESSPKSKLA----PAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVV 135
+++P + R+ E + P L+LVP+ ELC+Q + + Q +L +
Sbjct: 62 FVIPAVQRIITEREQRGNARALPNPRVLILVPSVELCEQTAEAAQLIAKYV--QPRLIID 119
Query: 136 QLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLS 195
LTS + R A IVI T + K S G + + +F ++ VLDEAD++ S
Sbjct: 120 NLTSGGAVTARRIQSA---HIVITTAALLAKGCSQGTVTADTF-QHVRFFVLDEADVVAS 175
Query: 196 YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNP--YILTLPEV-----GDV 248
E L+ + +++P Q +L SAT + V +K +L +P +LT +V GDV
Sbjct: 176 MA-ERSLRTVQSLLPPSMQVILASATLTKGVAAVKGQLLRHPVNVVLTSEDVEELARGDV 234
Query: 249 KDEV-----------------IPKNVQQFW-ISCSERDKLLYILTLLKLELVQKKALIFT 290
+D + K + Q++ ++ E + L ++ L+ K LIF
Sbjct: 235 EDSAASPQGPVVESRVRVRDPLKKTLHQYYLVATDECHSHTLLFGLYRMALITGKTLIFV 294
Query: 291 NTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQ 350
N + +RL+ FLE+ G+ + +A LP N RL L F +G L+ TD T E
Sbjct: 295 NDDEQTYRLQNFLEQLGVATLAYDANLPINVRLDTLRRFQSGTVSTLVCTDG--TLESAM 352
Query: 351 SDEGGHVDSRKSKK--------------------HPKAKLDSEFGVVRGIDFKNVHTVIN 390
+ + R +K +A ++ + RGIDF +V V+
Sbjct: 353 QLQASLEELRPGEKGSDGQSGSSSSRRRSRSASVCSRANTEAPSALHRGIDFAHVRNVVL 412
Query: 391 FEM-----PQNAAGYVHRIGRTGRAYNTGASVSLVS-PDEMKIFEEIKSFVGDDENEDSN 444
F+ P + Y+HRIGR GRA G S+++ + P K ++ + E +
Sbjct: 413 FDGVEATDPIALSRYIHRIGRAGRAGEEGVSIAIFTVPQARKYLRPLQEYC----TERGD 468
Query: 445 IIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKD 504
+I PF + + V L+YR + V ++T+ + R+ R + E+ S L H + KD
Sbjct: 469 VIRPFRQMQRAEVAKLQYRVDSVLGNITRASTRKMRVASVAAELSRSSYLANHL--SQKD 526
Query: 505 LDLLKHDKDLSKK--PPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRR 562
D L+ S K ++ +VP+Y+ + + K +A N R+ +
Sbjct: 527 TDALQRVMRRSSKRIRVERNILEVPEYMHLSTADDVGAYRKRVQAKQTQSNRLRKATQK- 585
Query: 563 KFRKSDPLKSF 573
+DPLK+
Sbjct: 586 --ASADPLKAV 594
>gi|117921047|ref|YP_870239.1| DEAD/DEAH box helicase [Shewanella sp. ANA-3]
gi|117613379|gb|ABK48833.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
Length = 449
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 140/410 (34%), Positives = 209/410 (50%), Gaps = 49/410 (11%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F + LD RL+ +L GI PT IQ+ ++P+ L GKD++A +KTGSGKT A+LLP + R
Sbjct: 3 FTDFSLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPAMQR 62
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+ + + +K P L+L+PTREL QVYS++ L+ Q K + + +D
Sbjct: 63 VIS-TRALTKRDPRVLILLPTRELAHQVYSQLRLLV----ANTQYKAISVLGGENFNDQA 117
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
ALA P ++ATPG + L Q F + L++LVLDEAD +L G+ LKA++A
Sbjct: 118 KALAKEPHFIVATPGRIADHLE----QKNLFLNGLELLVLDEADRMLDLGFAPQLKAINA 173
Query: 208 VIP-RGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
+ Q L+ SAT S+++++ +L NP + +G E +++ Q C
Sbjct: 174 AADHKRRQTLMFSATLDHSEINEIAAALLKNPSHVA---IGAAHTE--HQDITQRIYLCD 228
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
D +LT L + K+ +IFT T RL L G +A L+ EL Q +R I
Sbjct: 229 HLDHKEALLTRLLSDETHKQVIIFTATRADTERLASKLSAQGFATAALSGELKQAARNQI 288
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
+++F G L+ TD RG+D NV
Sbjct: 289 MDQFARGQQQILVTTDVAS---------------------------------RGLDLLNV 315
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
VINF+MP+ A YVHRIGRTGRA G ++SLV P + F++++ F+
Sbjct: 316 SLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDNFKKVQLFL 365
>gi|24374367|ref|NP_718410.1| ATP-dependent RNA helicase DEAD box family [Shewanella oneidensis
MR-1]
gi|24348927|gb|AAN55854.1| ATP-dependent RNA helicase DEAD box family [Shewanella oneidensis
MR-1]
Length = 449
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 140/410 (34%), Positives = 209/410 (50%), Gaps = 49/410 (11%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F + LD RL+ +L GI PT IQ+ ++P+ L GKD++A +KTGSGKT A+LLP L R
Sbjct: 3 FTDFSLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQR 62
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+ + + SK P L+L+PTREL QVYS++ L+ Q K + + +D
Sbjct: 63 VIS-TRALSKRDPRVLILLPTRELAHQVYSQLRLLV----ANTQYKAISVLGGENFNDQA 117
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS- 206
ALA P ++ATPG + L Q F + L++L+LDEAD +L G+ LKA++
Sbjct: 118 KALAKEPHFIVATPGRIADHLE----QKNLFLNGLELLILDEADRMLDLGFAPQLKAINE 173
Query: 207 AVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
A + Q L+ SAT S+++++ +L NP + +G E +++ Q C
Sbjct: 174 AADHKRRQTLMFSATLDHSEINEIAAALLKNPLHVA---IGTAHAE--HQDISQRIYLCD 228
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
D +L+ L + K+ +IFT T RL L G +A L+ EL Q +R I
Sbjct: 229 HLDHKEALLSRLLSDESHKQVIIFTATRADTERLAAKLSAQGFATAALSGELKQAARNQI 288
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
+++F G L+ TD RG+D NV
Sbjct: 289 MDQFARGQQQILVTTDVAS---------------------------------RGLDLLNV 315
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
VINF+MP+ A YVHRIGRTGRA G ++SLV P + F++++ F+
Sbjct: 316 SLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDSFKKVQLFL 365
>gi|262273976|ref|ZP_06051788.1| ATP-dependent RNA helicase [Grimontia hollisae CIP 101886]
gi|262221786|gb|EEY73099.1| ATP-dependent RNA helicase [Grimontia hollisae CIP 101886]
Length = 441
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 138/411 (33%), Positives = 210/411 (51%), Gaps = 51/411 (12%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
FE+LGLD RL+ + G PT +Q ++IP++ GKD++A +KTGSGKT A+LLP L R
Sbjct: 3 FEDLGLDKRLLKTMELWGFDTPTDVQASAIPVVCAGKDLLASSKTGSGKTLAFLLPALQR 62
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+ S S+ P +VL PTREL +QVY E+ L+ Q K + + +D
Sbjct: 63 VM-RSKAFSRSGPRVVVLAPTRELVKQVYGELRKLL----AGTQFKGMLILGGENFNDQA 117
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKAL- 205
P ++ATPG + L+ + S + L++L+LDEAD +L G+ LKA+
Sbjct: 118 KEFRKNPAFIVATPGRLADH-----LEHRHLSLEGLELLILDEADRMLDLGFAPQLKAIN 172
Query: 206 SAVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264
SA R Q L+ SAT V+++ +L +P + +G V +E K+++Q + C
Sbjct: 173 SAANHRRRQTLMFSATLDHQQVNEIAADMLKDPKRVA---IGFVNEE--HKDIEQRFFLC 227
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
D +L + + ++ +IFT T RL + + GIK+ L+ +L Q++R
Sbjct: 228 DHLDHKQALLDRVMEQESYQQVMIFTATRADTDRLATWFVERGIKAVALSGDLSQSARNR 287
Query: 325 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 384
I+ EF GL L+ TD RG+D N
Sbjct: 288 IMNEFERGLHKVLVTTDVAS---------------------------------RGLDISN 314
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
V V+NF+MP++A YVHRIGRTGRA N G ++S V P + F+ I+ F+
Sbjct: 315 VSHVVNFDMPKHAEEYVHRIGRTGRAGNKGIAISFVGPKDWNSFKNIEGFL 365
>gi|83647393|ref|YP_435828.1| superfamily II DNA/RNA helicase [Hahella chejuensis KCTC 2396]
gi|83635436|gb|ABC31403.1| Superfamily II DNA and RNA helicase [Hahella chejuensis KCTC 2396]
Length = 453
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 142/415 (34%), Positives = 214/415 (51%), Gaps = 60/415 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF LGL ++ A++++G P+ IQ +IP++LEGKDV+A A+TG+GKT A+ LP+L
Sbjct: 2 SFASLGLSAPILDAISEQGYASPSPIQLQAIPVVLEGKDVMAAAQTGTGKTAAFTLPILE 61
Query: 87 RLFNESSPKSKLAPAALVLVPTREL------CQQVYSEVMALIELCKGQVQLKVVQLTSS 140
RL +S A AL+L PTREL C +YS + L + V V++
Sbjct: 62 RLSKGDRARSNQA-RALILTPTRELAAQVGECVSIYSSKLPL----RSTVVFGGVKINPQ 116
Query: 141 MPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYED 200
M LR + D+++ATPG + + ++ F D L++LVLDEAD +L G+
Sbjct: 117 M--MRLRRGV----DVIVATPGRLLDLYNQNAVR---FQD-LEVLVLDEADRMLDMGFIH 166
Query: 201 DLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF 260
D++ + ++P+ Q L+ SAT S+D+ KL K +++NP E+ K V+Q
Sbjct: 167 DIRKILDILPKRRQNLMFSATFSNDIRKLAKELVNNPV-----EISVSPPNTTAKTVKQ- 220
Query: 261 WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 320
WI ++ + +LT L + +AL+F+ T A RL L GI +A ++ + QN
Sbjct: 221 WIHPVDKKQKSALLTQLIRDNNWDQALVFSRTKHGANRLTRQLCAKGINAAAIHGDKSQN 280
Query: 321 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 380
+R L +F G L+ATD RGI
Sbjct: 281 ARTKALADFKTGSVQILVATDIA---------------------------------ARGI 307
Query: 381 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
D + V+NF++PQ A YVHRIGRTGRA G +VSLVS DE K+ +I+ +
Sbjct: 308 DIDQLPQVVNFDLPQVAEDYVHRIGRTGRAGAEGQAVSLVSADEFKLLADIERLI 362
>gi|407425375|gb|EKF39383.1| ATP-dependent RNA helicase, putative, partial [Trypanosoma cruzi
marinkellei]
Length = 599
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 170/581 (29%), Positives = 294/581 (50%), Gaps = 54/581 (9%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
++ E+ LD R++ A+ + PT +Q A IPL L+G+D+ ++TGSGKT A+++P+L
Sbjct: 19 AWPEMALDSRILEAIKRVKWNSPTPVQGACIPLALKGRDLAIHSRTGSGKTGAFVIPILQ 78
Query: 87 RLFNES----SPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMP 142
R+ E+ + ++ P AL+++P+ ELC+Q V AL + + +V V LTS
Sbjct: 79 RVITETEKMCNRRTAKNPVALIVLPSVELCEQTVEVVTALAKYVRPRV--VVDNLTSRGV 136
Query: 143 ASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 202
+ +A LA P I++ T + K +G + ++ + +L+ +V+DE D ++S E L
Sbjct: 137 VT--KARLAAAP-ILVTTAALLGKHCRSGTVTAEDLA-TLRCVVIDEVDFVISIA-EGSL 191
Query: 203 KALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIP-------- 254
+A+ +++P Q +L SAT + V +K +LHNP +TL GD +DE+ P
Sbjct: 192 RAVQSILPPSVQTILSSATLTDGVVHIKSQLLHNPVTITL-STGD-EDEMTPPEGENIVV 249
Query: 255 -KNVQQFWISCSERDKLLYIL------------TLLKLELVQKKALIFTNTIDMAFRLKL 301
+ + I+ ER + Y++ L +L ++ K LIF N + ++++
Sbjct: 250 ESRITKKGITSEERLRHYYLVATDECHNHTLLYALYRLGHIKGKTLIFVNEEETTYKVQS 309
Query: 302 FLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRK 361
FL + G+++ + ++ LP N R+ L F G L+ TD T + + V+++
Sbjct: 310 FLAQLGVEALVYDSNLPLNVRVDTLHRFQVGSVGTLVCTDGTLESFDNLQESTPGVEAQA 369
Query: 362 SKKHPKAKLDSEFG----VVRGIDFKNVHTVINFE---MPQNAA--GYVHRIGRTGRAYN 412
++ + K +E G + RGIDF +V VI F+ P +A Y HR+GR GRA
Sbjct: 370 TRTYSKKGKRTEDGHDGALQRGIDFSDVRNVILFDGIAHPTTSAFSRYTHRVGRAGRAGK 429
Query: 413 TGASVSLVSPDE-MKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSV 471
G +++L + + ++ ++ +G + PF L + L+YR ++V ++
Sbjct: 430 GGMAITLFTLQQAQRVTRHLRRHLGATH----DTFEPFKQLRRQEAAKLQYRVDNVLFTI 485
Query: 472 TKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPA--SHLRDVPDY 529
T+ + R R + E+ S LK+H + KD +L+ SKK + L DVP Y
Sbjct: 486 TRSSTRRQRISSVAAELTRSAYLKSHM--SQKDESVLQRILSRSKKTTKCDTTLLDVPHY 543
Query: 530 LLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPL 570
+ A K RA +K+SS Q PR K R DPL
Sbjct: 544 MHIEGADSAENYRKRVRARTSSKSSSSSQQPRTKSR--DPL 582
>gi|345563744|gb|EGX46729.1| hypothetical protein AOL_s00097g477 [Arthrobotrys oligospora ATCC
24927]
Length = 854
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 134/403 (33%), Positives = 201/403 (49%), Gaps = 49/403 (12%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
+F+++ L ++ L PT IQ +IP+ L +D+V A TGSGKT AY++P+L
Sbjct: 320 TFQQMNLSRPILRGLGHINFTTPTAIQSRTIPIALLARDIVGGAVTGSGKTAAYMVPILE 379
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
RL PK ++L PTREL QV++ + L + L V L+ ++L
Sbjct: 380 RLLYR--PKKVAQTRVVILTPTRELAIQVHAVAVKLAAFTDIKFTLAVGGLSLKAQEAEL 437
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSF-SDSLKILVLDEADLLLSYGYEDDLKAL 205
R PDIVIATPG + S SF +D ++ILVLDEAD +L G+ D+L +
Sbjct: 438 RQR----PDIVIATPGRFIDHMRN----SASFHTDGIEILVLDEADRMLEDGFADELDEI 489
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW-ISC 264
+P+ Q +L SAT + VDKL ++ + P L + D K + Q+F I
Sbjct: 490 LKTLPKSRQTMLFSATMTDSVDKLVRVGMQKPVRLLV----DSKKSTVATLTQEFIRIRP 545
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
L +L LL EL + + ++F + A R+++ G+K+A L+ L Q R+
Sbjct: 546 GREGGRLAMLVLLATELYKSRCIVFFRSKVYAHRVRIIFGLLGLKAAELHGSLSQEQRIK 605
Query: 325 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 384
+E+F G D+L+ATD L S RG+D KN
Sbjct: 606 AVEQFRDGTVDFLLATD----------------------------LAS-----RGLDIKN 632
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 427
V VINFE+PQ+ Y HR+GRT RA +G +++L + + KI
Sbjct: 633 VSYVINFELPQSHEIYTHRVGRTARAGRSGRAITLAAEADRKI 675
>gi|333891675|ref|YP_004465550.1| ATP-dependent RNA helicase RhlE [Alteromonas sp. SN2]
gi|332991693|gb|AEF01748.1| ATP-dependent RNA helicase RhlE [Alteromonas sp. SN2]
Length = 457
Score = 203 bits (516), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 144/411 (35%), Positives = 208/411 (50%), Gaps = 52/411 (12%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF ELGL L+ A+ K+G P+ IQQ +IP+ILEGKD++A A+TG+GKT + LPLLH
Sbjct: 2 SFSELGLAAPLLQAIEKQGYTTPSPIQQQAIPIILEGKDILAAAQTGTGKTAGFSLPLLH 61
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIEL--CKGQVQLKVVQLTSSMPAS 144
RL + P + AL+L PTREL QV V + E K V V + M A
Sbjct: 62 RLL-DGRPAASNCVRALILTPTRELAAQVEENVKSFSEFLPLKTAVVFGGVGINPQMKA- 119
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
LR+ + D++IATPG + ++ FS L+ LVLDEAD +L G+ D+K
Sbjct: 120 -LRSGV----DVLIATPGRLLDLYQQNAVK---FSQ-LETLVLDEADRMLDMGFIHDIKR 170
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264
+ ++P Q LL SAT SS++ L + I +NP +V + VQQ +
Sbjct: 171 ILKLLPTKRQTLLFSATFSSEITTLAQTITNNPE-----KVSTAPANTTVETVQQHLVPI 225
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
+ K +++L+K + K+ L+F+ T A R+ L + I SA ++ Q +R
Sbjct: 226 DKSKKTAALISLIK-QNGWKQVLVFSRTKHGANRIADKLSRARIPSAAIHGNKSQGARTK 284
Query: 325 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 384
L EF +G D L+ATD RGID
Sbjct: 285 ALSEFKSGEIDVLVATDI---------------------------------AARGIDINE 311
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ VIN ++P A YVHRIGRTGRA +G + S VS DE+ ++I++ +
Sbjct: 312 LPIVINIDLPNTPADYVHRIGRTGRAGASGQAWSFVSIDELDQLKDIETLI 362
>gi|154338133|ref|XP_001565291.1| putative ATP-dependent RNA helicase [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134062340|emb|CAM42199.1| putative ATP-dependent RNA helicase [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 606
Score = 203 bits (516), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 168/610 (27%), Positives = 280/610 (45%), Gaps = 72/610 (11%)
Query: 20 AEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFA 79
+E E + + EL LD R++ AL +KPT +Q A +PL L+GKD+ ++ TGSGKT A
Sbjct: 2 SEGEVQAEWSELPLDTRVLEALKDLAWRKPTAVQSACVPLALKGKDISIQSHTGSGKTGA 61
Query: 80 YLLPLLHRLFNE----SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVV 135
+++P + R+ E S + +P L+LVP+ ELC+Q + + +L +
Sbjct: 62 FVIPAVQRIITEREQCGSGRVLPSPRVLILVPSVELCEQTAEATEVIAKYV--HPRLVID 119
Query: 136 QLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLS 195
LTS D+ A I+I+T + K S G + + + ++ VLDEAD++ S
Sbjct: 120 NLTS---GGDVTARRIQSAHIIISTAALLGKGCSHGTVTADTLKH-VRFFVLDEADVVAS 175
Query: 196 YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNP--YILTLPEV-----GDV 248
E L+ + +++P Q +L SAT + V +K +L +P +LT +V GD+
Sbjct: 176 MA-ERSLRTVQSLLPPNMQVILASATLTKGVAAVKGQLLRHPVNVVLTSEDVEELVPGDI 234
Query: 249 KDEV-----------------IPKNVQQFW-ISCSERDKLLYILTLLKLELVQKKALIFT 290
KD + K + Q++ ++ E + L ++ L+ K LIF
Sbjct: 235 KDSAASQQGPVVESRVTVRDPLKKTLHQYYLVATDECHSHTLLFGLYRMALITGKTLIFV 294
Query: 291 NTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEK-- 348
N + +RL+ FLE+ G+ + +A LP N R L F +G L+ TD T K
Sbjct: 295 NDDEQTYRLQNFLEQLGVATLAYDANLPVNVRFDTLRRFQSGAVSTLVCTDGTLEKAMQL 354
Query: 349 ----DQSDEGGHVDS--------RKSKKHPK-----AKLDSEFGVVRGIDFKNVHTVINF 391
++ GG + R+S+ P A ++ + RGIDF +V VI F
Sbjct: 355 QMSLEEPQPGGRASTGKLAASSRRRSRPTPACGGGLANDEAPSALHRGIDFTHVRNVILF 414
Query: 392 EM-----PQNAAGYVHRIGRTGRAYNTGASVSLVS-PDEMKIFEEIKSFVGDDENEDSNI 445
+ P + Y HRIGR GRA G S+++ + P K ++ + +
Sbjct: 415 DGVEATDPIALSRYTHRIGRAGRAGEEGVSIAIFTVPKARKYLRPLQEYC----RGRGDA 470
Query: 446 IAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDL 505
I PF + + V L+YR + V ++T+ + R+ R + E+ S L + + KD
Sbjct: 471 IQPFRQMQRAEVAKLQYRVDSVLGNITRTSTRKMRVASVAAELSRSSYLSNYL--SQKDT 528
Query: 506 DLLKHDKDLSKK--PPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRK 563
D L+ S K ++ +VP+Y+ + K RA+ N R +
Sbjct: 529 DALQRVMQRSSKRVRVERNILEVPEYMHLPTADDVATYRKRVRASQTQSNRLRNATHK-- 586
Query: 564 FRKSDPLKSF 573
+DPLK+
Sbjct: 587 -ATADPLKAV 595
>gi|308497817|ref|XP_003111095.1| hypothetical protein CRE_03900 [Caenorhabditis remanei]
gi|308240643|gb|EFO84595.1| hypothetical protein CRE_03900 [Caenorhabditis remanei]
Length = 749
Score = 202 bits (515), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 143/460 (31%), Positives = 223/460 (48%), Gaps = 54/460 (11%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SFE++ L +++ A G PT IQQA IP+ L GKD+ A A TG+GKT A++LP+L
Sbjct: 156 SFEQMNLSRQILKACAGAGYTDPTPIQQACIPVALSGKDICACAATGTGKTAAFVLPILE 215
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
R+ PK LVLVPTREL QV+ L +QL+V +
Sbjct: 216 RMI--YRPKGASCTRVLVLVPTRELAIQVFQVFRKLSTF----IQLEVCLCAGGLDLKAQ 269
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKAL 205
AAL PD+V+ATPG + L S +F+ S+++LVLDEAD +L + D + L
Sbjct: 270 EAALRSGPDVVVATPGRLIDHLHN----SPNFNLGSIEVLVLDEADRMLEEAFRDQMNEL 325
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
+ Q LL SAT + ++D+L + L P + + E D ++ + ++ +
Sbjct: 326 IRLCAENRQTLLFSATMTEEIDELASMSLQRPVKIFINENTDTALKLRQEFIRIRAGRET 385
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
+R+ ++ L Q ++F T R+++ L GIK + + L Q R+
Sbjct: 386 DRESMVAALVTRTF---QTNTIVFVRTKKDCQRMQILLGLLGIKVGQMQSSLTQGQRIES 442
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
L +F G D L++TD L S RG+D + V
Sbjct: 443 LSKFKKGEIDVLVSTD----------------------------LAS-----RGLDIEGV 469
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNI 445
TVIN MP++ Y+HR+GRT RA G S+SLV +E K+ +EI N +++
Sbjct: 470 QTVINMNMPKSIKQYIHRVGRTARAGKAGRSISLVGEEERKLLKEIV-------NSNADR 522
Query: 446 IAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLR 485
L+A VE+ R R +D+ +++ +I + ++LR
Sbjct: 523 TLKQRLVAPEVVEAYRSRIDDLEETIQQIDEEDRAEKELR 562
>gi|71414286|ref|XP_809250.1| ATP-dependent RNA helicase [Trypanosoma cruzi strain CL Brener]
gi|70873604|gb|EAN87399.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
Length = 592
Score = 202 bits (515), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 174/599 (29%), Positives = 300/599 (50%), Gaps = 56/599 (9%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
++ E+ LD R++ A+ + PT +Q A IPL L+G+D+ +++TGSGKT A+++P+L
Sbjct: 12 AWPEMALDSRILEAIKRVKWNSPTPVQGACIPLALKGRDLAIQSRTGSGKTGAFVIPILQ 71
Query: 87 RLFNES----SPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMP 142
R+ E+ + ++ P AL+L+P+ ELC+Q V AL + + +V V LTS
Sbjct: 72 RVITETEKMCNRRTAKNPVALILLPSVELCEQTVEVVTALAKYVRPRV--VVDNLTSRGV 129
Query: 143 ASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 202
+ R A A P I++ T + K +G + ++ + +L+ +V+DE D ++S E L
Sbjct: 130 VTKARVA-AAP--ILVTTAALLGKHCRSGTVTAEDLA-TLRCVVIDEVDFVISIA-EGSL 184
Query: 203 KALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL---------PEVGDVKDEVI 253
+A+ +V+P Q +L SAT + V +K +LHNP +TL P G+ + V+
Sbjct: 185 RAVQSVLPPSVQTILSSATLTDGVVHIKSQLLHNPVTITLSTDDENEMTPTEGE--NIVV 242
Query: 254 PKNVQQFWISCSERDKLLYIL------------TLLKLELVQKKALIFTNTIDMAFRLKL 301
+ + I+ ER + Y++ L +L ++ K LIF N + ++++
Sbjct: 243 ESRITKKGINSEERLRHYYLVATDECHHHTLLYALYRLGHIKGKTLIFVNEEEKTYKVQS 302
Query: 302 FLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDT--QTKEKDQSDEGGHVDS 359
FL + G+++ + ++ LP N R+ L F G L+ TD T +S G +
Sbjct: 303 FLAQLGVEALVYDSNLPLNVRVDTLHRFQVGSVGTLVCTDGTLESVDNLQESIPGAEAQT 362
Query: 360 RK--SKKHPKAKLDSEFGVVRGIDFKNVHTVINFE---MPQNAAG--YVHRIGRTGRAYN 412
+ SKK + + + + RGIDF +V V+ F+ P +A Y HR+GR GRA
Sbjct: 363 TRMHSKKGKRTEDRHDGALQRGIDFSDVRNVVLFDGIAHPTTSAFSLYTHRVGRAGRAGK 422
Query: 413 TGASVSLVSPDE-MKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSV 471
G +++L + + ++ ++ +G + PF L + L+YR ++V S+
Sbjct: 423 GGMAITLFTLQQAQRVTRHLRRHLGATH----DTFEPFKQLRRQEAAKLQYRVDNVLFSI 478
Query: 472 TKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPA--SHLRDVPDY 529
T+ + R R + E+ S LK+H + KD +L+ SKK + L DVP Y
Sbjct: 479 TRSSTRRQRISSVAAELTRSAYLKSHM--SQKDEAVLQRILSRSKKTTKCDTTLLDVPHY 536
Query: 530 LLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSFSAEPTKRAGKGRMKR 588
+ A K K RA +K+SS Q PR + R DPL ++ + GK + +R
Sbjct: 537 MHIEGVDSAEKYRKRVRACTSSKSSSASQQPRTRSR--DPLSRVAS--AVKMGKAKKRR 591
>gi|153000172|ref|YP_001365853.1| DEAD/DEAH box helicase [Shewanella baltica OS185]
gi|160874799|ref|YP_001554115.1| DEAD/DEAH box helicase [Shewanella baltica OS195]
gi|378708048|ref|YP_005272942.1| DEAD/DEAH box helicase [Shewanella baltica OS678]
gi|418026102|ref|ZP_12665075.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS625]
gi|151364790|gb|ABS07790.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
gi|160860321|gb|ABX48855.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
gi|315267037|gb|ADT93890.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
gi|353534535|gb|EHC04104.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS625]
Length = 451
Score = 202 bits (515), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 139/410 (33%), Positives = 206/410 (50%), Gaps = 49/410 (11%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F + LD RL+ ++ GI +PT IQ+ ++P+ L GKD++A +KTGSGKT A+LLP L R
Sbjct: 3 FTDFSLDQRLLQSIKHMGITEPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQR 62
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+ + S SK P L+L+PTREL QVYS++ L+ Q K + + +D
Sbjct: 63 VISTRS-LSKRDPRVLILLPTRELAHQVYSQLRLLV----ANTQYKAISVLGGENFNDQA 117
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS- 206
ALA P ++ATPG + L Q F + L++LVLDEAD +L G+ LKA++
Sbjct: 118 KALAKEPHFIVATPGRIADHLE----QKHLFLNGLELLVLDEADRMLDLGFAPQLKAIND 173
Query: 207 AVIPRGCQCLLMSATSSSD-VDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
A + Q L+ SAT D ++ + +L NP + +G E ++ Q C
Sbjct: 174 AADHKRRQTLMFSATLDHDEINDIAATLLKNPAHVA---IGAAHSE--HNDIHQRIFLCD 228
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
D +L L + K+ +IFT T RL L G +A L+ +L Q +R I
Sbjct: 229 HLDHKEALLARLLKDETHKQVIIFTATRPDTERLAAKLTAQGFATAALSGDLKQAARNQI 288
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
+++F G L+ TD RG+D NV
Sbjct: 289 MDQFARGQQQVLVTTDVAS---------------------------------RGLDLLNV 315
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
V+NF+MP+ A YVHRIGRTGRA G ++SLV P + F++++ F+
Sbjct: 316 SLVVNFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDNFKKVQVFL 365
>gi|392884823|ref|NP_490891.2| Protein Y71G12B.8 [Caenorhabditis elegans]
gi|373219451|emb|CCD67990.1| Protein Y71G12B.8 [Caenorhabditis elegans]
Length = 739
Score = 202 bits (515), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 145/463 (31%), Positives = 224/463 (48%), Gaps = 60/463 (12%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SFE++ L +++ A + G PT IQQA IP+ L GKD+ A A TG+GKT A++LP+L
Sbjct: 149 SFEQMNLSRQILKACSGAGYSDPTPIQQACIPVALTGKDICACAATGTGKTAAFVLPILE 208
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
R+ PK LVLVPTREL QV+ L +QL+V +
Sbjct: 209 RMIYR--PKGASCTRVLVLVPTRELAIQVFQVFRKLSTF----IQLEVCLCAGGLDLKAQ 262
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKAL 205
AAL PD+V+ATPG + L S SF+ ++++LVLDEAD +L + D + L
Sbjct: 263 EAALRSGPDVVVATPGRLIDHLHN----SPSFNLSNIEVLVLDEADRMLEEAFRDQMNEL 318
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWI--- 262
+ + Q LL SAT + ++D+L + L P + + E D ++Q +I
Sbjct: 319 IRLCAQNRQTLLFSATMTEEIDELASMSLQKPVKIFINENTDT-----ALKLRQEFIRIR 373
Query: 263 SCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 322
+ E D+ + L+ Q ++F T R+++ L GIK + + L Q R
Sbjct: 374 AGRETDREAMVAALV-TRTFQTNTIVFVRTKKDCQRMQILLGLLGIKVGQMQSSLTQGQR 432
Query: 323 LHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDF 382
+ L +F D L++TD L S RG+D
Sbjct: 433 IESLSKFKKAEIDVLVSTD----------------------------LAS-----RGLDI 459
Query: 383 KNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENED 442
+ V TVIN MP++ Y+HR+GRT RA G S+SLV DE K+ +EI N +
Sbjct: 460 EGVQTVINMNMPKSIKQYIHRVGRTARAGKAGRSISLVGEDERKLLKEIV-------NSN 512
Query: 443 SNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLR 485
++ L+A VE+ R R +++ +++ +I + ++LR
Sbjct: 513 ADRTLKQRLVAPEVVEAYRRRIDELEETIQQIDEEDRAEKELR 555
>gi|145357256|ref|XP_001422836.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144583080|gb|ABP01195.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 710
Score = 202 bits (515), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 157/539 (29%), Positives = 256/539 (47%), Gaps = 67/539 (12%)
Query: 26 KSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLL 85
K+F+EL L L A G +KPT IQ A IP+ + G+DV RA TGSGKT A++LP L
Sbjct: 148 KAFDELHLSRPLTRACEALGYKKPTPIQAAVIPIAMTGRDVCGRAVTGSGKTAAFMLPQL 207
Query: 86 HRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASD 145
R+ + P+ A LVLVPTREL QV+ +L + + L V L++++ A+
Sbjct: 208 ERMLHR-GPRPAAATHVLVLVPTRELAVQVHQMTESLAQFTTIRAVLVVGGLSANVQAAA 266
Query: 146 LRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKA 204
LR P+IV+ATPG + V + SF + L L+LDEAD LL G+ +++K
Sbjct: 267 LRTR----PEIVVATPGRVIDH----VRNTHSFGLEDLATLILDEADRLLEMGFLEEIKE 318
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264
+ P+ Q LL SAT ++ V+ L L + NP L+ +G ++ + ++
Sbjct: 319 IVRQCPKKRQTLLFSATLTAGVEALASLSMKNPARLSADTLGTTPKRLVEEVLKLKPNQS 378
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
++++ L + + K +IF+ T A RLK+ + IK+ L+ ++ Q RL
Sbjct: 379 AQKEAFLMAIVSRSYD---KSTIIFSQTKQEAHRLKIIMGLSDIKAGELHGDMTQTQRLA 435
Query: 325 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 384
L+EF G +LIATD RG+D +
Sbjct: 436 ALDEFRTGTVTHLIATDV---------------------------------AARGLDIPS 462
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSN 444
V VI+F+ P+ A Y+HR+GRT RA G +++ + + K+ +K+ N +
Sbjct: 463 VDAVISFDAPKTLASYLHRVGRTARAGKKGTALTFMEESDRKL---VKTIAKRGANLKAR 519
Query: 445 IIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKD 504
I+ N V + ED+ + + +I E + L+ KA E N K
Sbjct: 520 IV------PGNIVAEWHKKIEDMEEQIVQINYEERTERQLQ---------KAEMEAN-KA 563
Query: 505 LDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRK 563
++L+H ++ +P + + D K +A K ++ A + ++ S R+ RR+
Sbjct: 564 SNILEHAAEIKSRPAKTWFQSERDKRNAQK--DALKAMETAEMDLMDRKSHRKGAKRRQ 620
>gi|414886235|tpg|DAA62249.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 770
Score = 202 bits (515), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 160/480 (33%), Positives = 228/480 (47%), Gaps = 68/480 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF EL L LV A G QKPT IQ A IPL L G+D+ A TGSGKT A+ LP+L
Sbjct: 163 SFLELNLSRPLVRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLE 222
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
RL PK A L+L PTREL QV+S + L + + L V L++ + L
Sbjct: 223 RLLFR--PKRVPAIRVLILTPTRELAAQVHSMIEKLAQFTDIRCCLIVGGLSTKVQEVAL 280
Query: 147 RAALAGPPDIVIATPG----CMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 202
R+ PDIV+ATPG + LS G+ + L +++LDEAD LL G+ ++
Sbjct: 281 RSM----PDIVVATPGRIIDHLRNSLSVGL-------EDLAVVILDEADRLLELGFSAEI 329
Query: 203 KALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL----TLPEVGDVKDEVIPKNVQ 258
+ L + P+ Q +L SAT + ++D+L KL L+ P L +L + +EV+ ++
Sbjct: 330 QELIRMCPKRRQTMLFSATMTEEIDELIKLSLNKPVRLEADPSLKRPATLTEEVV--RIR 387
Query: 259 QFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELP 318
+ S E +L L L+ ++ +IF+ T A RLK+ G+K+A L+ L
Sbjct: 388 RARESNQE-----AVLLALCLKTFKRSVIIFSGTKQSAHRLKIIFGLSGMKAAELHGNLT 442
Query: 319 QNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVR 378
Q RL LE F D+LIATD R
Sbjct: 443 QAQRLEALELFRKQEVDFLIATD---------------------------------VAAR 469
Query: 379 GIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD 438
GID V TVINF P++ Y+HR+GRT RA G +V+ V+ D+ + + I G
Sbjct: 470 GIDIVGVQTVINFACPRDVKTYLHRVGRTARAGREGYAVTFVTDDDRSLLKAIAKKAGSQ 529
Query: 439 ENEDSNIIAPFPLL-AQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAH 497
S I+A P+ +E L ED + + E A+ EI +E + AH
Sbjct: 530 LK--SRIVAEKPVAECAQLIEQL----EDQISIIIREEKVEREARKAEMEIAKAENMIAH 583
>gi|452839340|gb|EME41279.1| hypothetical protein DOTSEDRAFT_73630 [Dothistroma septosporum
NZE10]
Length = 513
Score = 202 bits (514), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 138/420 (32%), Positives = 214/420 (50%), Gaps = 49/420 (11%)
Query: 23 EEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLL 82
EE+KSF ELG+ +L A G KPT IQ+ SIP+ LEGKD++ A+TGSGKT A+ L
Sbjct: 80 EEDKSFAELGVIDQLCDACANLGFTKPTAIQKESIPIALEGKDIIGLAETGSGKTAAFAL 139
Query: 83 PLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMP 142
P+L L ++P+ + LVL PTREL Q+ + AL L + ++ L M
Sbjct: 140 PILQALM--AAPQHEQHKFGLVLAPTRELAYQISQQFEALGSL----INVRCAVLVGGMD 193
Query: 143 ASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDD 201
AL P IV+ATPG + L +K FS SLK LV+DEAD LL +
Sbjct: 194 MVPQAIALNKNPHIVVATPGRLLDHLEN----TKGFSMRSLKYLVMDEADRLLDLDFGPI 249
Query: 202 LKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW 261
L + V+P + +L SAT S+ ++ L + L NP +++ KN+ Q +
Sbjct: 250 LDKILQVLPSKRRTMLFSATMSTKLNNLTRAALQNPVRVSISS----SSYQTVKNLMQRY 305
Query: 262 ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 321
I + K +Y++ LL E + ++FT TI+ R+ L G + L+ ++ Q++
Sbjct: 306 IFIPHKFKDIYLVYLLN-EFAGQTCIVFTRTINETQRIAFLLRALGRSAIPLHGQMNQSA 364
Query: 322 RLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGID 381
RL L +F G + L+ATD RG+D
Sbjct: 365 RLGALNKFRGGSREILVATDVA---------------------------------ARGLD 391
Query: 382 FKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENE 441
+V V+NF++P ++ YVHR+GRT RA +G ++S+V+ +++I++ I+ +G +E
Sbjct: 392 IPSVDLVLNFDLPPDSKTYVHRVGRTARAGKSGVAISVVTQYDIEIYQRIEKALGKKLDE 451
>gi|373949045|ref|ZP_09609006.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
gi|386325116|ref|YP_006021233.1| DEAD/DEAH box helicase [Shewanella baltica BA175]
gi|333819261|gb|AEG11927.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
gi|373885645|gb|EHQ14537.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
Length = 451
Score = 202 bits (514), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 139/410 (33%), Positives = 207/410 (50%), Gaps = 49/410 (11%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F + LD RL+ ++ GI +PT IQ+ ++P+ L GKD++A +KTGSGKT A+LLP L R
Sbjct: 3 FTDFSLDQRLLQSIKHMGITEPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQR 62
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+ + S SK P L+L+PTREL QVYS++ L+ Q K + + +D
Sbjct: 63 VISTRS-LSKRDPRVLILLPTRELAHQVYSQLRLLV----ANTQYKAISVLGGENFNDQA 117
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS- 206
ALA P ++ATPG + L Q F + L++LVLDEAD +L G+ LKA++
Sbjct: 118 KALAKEPHFIVATPGRIADHLE----QKHLFLNGLELLVLDEADRMLDLGFAPQLKAIND 173
Query: 207 AVIPRGCQCLLMSATSSSD-VDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
A + Q L+ SAT D ++ + +L NP + +G E ++ Q C
Sbjct: 174 AADHKRRQTLMFSATLDHDEINDIAATLLKNPAHVA---IGAAHSE--HNDIHQRIFLCD 228
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
D +L L + K+ +IFT T RL L + G +A L+ +L Q +R I
Sbjct: 229 HLDHKEALLARLLKDETHKQVIIFTATRPDTERLAAKLIEQGFATAALSGDLKQAARNQI 288
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
+++F G L+ TD RG+D NV
Sbjct: 289 MDQFARGQQQVLVTTDVAS---------------------------------RGLDLLNV 315
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
V+NF+MP+ A YVHRIGRTGRA G ++SLV P + F++++ F+
Sbjct: 316 SLVVNFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDNFKKVQVFL 365
>gi|213408188|ref|XP_002174865.1| ATP-dependent RNA helicase drs1 [Schizosaccharomyces japonicus
yFS275]
gi|212002912|gb|EEB08572.1| ATP-dependent RNA helicase drs1 [Schizosaccharomyces japonicus
yFS275]
Length = 730
Score = 202 bits (514), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 161/576 (27%), Positives = 266/576 (46%), Gaps = 110/576 (19%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF+++ L ++ L+ + PT IQ +IP+ L GKD+V A TGSGKT A+++P+L
Sbjct: 232 SFQDMKLSRPILRGLSSLNFEDPTPIQSKTIPVALLGKDIVGAAVTGSGKTAAFVVPILE 291
Query: 87 RLFNESSPKSKLAPAALVLVPTREL---CQQVYSEVMALIE----LCKGQVQLKVVQLTS 139
RL PK L++ PTREL C V + A + LC G + LKV +
Sbjct: 292 RLV--YRPKKIPTSRVLIICPTRELAMQCHNVAKRIAAFTDITLCLCVGGLSLKVQE--- 346
Query: 140 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGY 198
+LR PDI+IATPG V S+ FS D+++I+V+DEAD +L G+
Sbjct: 347 ----QELRKR----PDIIIATPG----RFIDHVRNSQGFSVDNIEIMVIDEADRMLEDGF 394
Query: 199 EDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ 258
D+L + + P+ Q +L SAT + VD L +L L+ P + + D K + VQ
Sbjct: 395 ADELNEIVKLCPKSRQTMLFSATMTEKVDDLVRLSLNRPVRIFV----DAKKATAKRLVQ 450
Query: 259 QFWISCSERDKLL-YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAEL 317
+F +R++L +L + ++ +IF A ++++ G+ + ++ L
Sbjct: 451 EFIRVRPQREQLRPAMLVHICKTFFHRRVIIFFRNKAFAHKMRIIFGLVGLNATEIHGSL 510
Query: 318 PQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVV 377
Q R+ LE+F G DYL+ATD
Sbjct: 511 SQEQRVRALEDFRDGKVDYLLATDVAS--------------------------------- 537
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RG+D K V VIN+E P + Y+HR+GRT RA +G ++SLV ++ K+ IK +
Sbjct: 538 RGLDIKGVEFVINYEAPASHEIYLHRVGRTARAGRSGRAISLVGENDRKV---IKDVLKS 594
Query: 438 DENEDSNIIA---PFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKL 494
EN+ N+++ FP R E + K + ++ +D +++ EK
Sbjct: 595 SENQHDNVVSRNLDFP------------RVEAIGKELEEL-------EDTVKQVMEEEKQ 635
Query: 495 KAHFEVNPKDL----DLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMG 550
+ H ++ +DL ++LKH ++ +P + + K ++A K +A
Sbjct: 636 ERHIKIAERDLKKGENILKHQDEIKARPART-------WFQTEKEKKASKTAATGKAV-- 686
Query: 551 NKNSSRRQGPRRKFRKSDPLKSFSAEPTKRAGKGRM 586
P K +K+ + +A P K+ + RM
Sbjct: 687 ---------PLSKRKKAMDAEEAAARPYKKTRQDRM 713
>gi|409083507|gb|EKM83864.1| hypothetical protein AGABI1DRAFT_117335, partial [Agaricus bisporus
var. burnettii JB137-S8]
Length = 701
Score = 202 bits (514), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 170/553 (30%), Positives = 265/553 (47%), Gaps = 83/553 (15%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF + L L+ A+ G KPT IQ ++IP+ L GKDVV A TGSGKT A+++P++
Sbjct: 195 SFLSMNLSRPLMKAVTNLGFNKPTPIQASTIPVALLGKDVVGNAVTGSGKTAAFMIPMIE 254
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYS-----EVMALIELCKGQVQLKVVQLTSSM 141
RL K A LVLVPTREL Q Y + I LC L V L+
Sbjct: 255 RLLFREKGKKAAAIRCLVLVPTRELAVQCYEVGTKLSIHTDIRLC-----LVVGGLSLKS 309
Query: 142 PASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYED 200
+DLR+ PDIVIATPG L + S SFS D+L ILV+DEAD +LS G+ D
Sbjct: 310 QEADLRSR----PDIVIATPG----RLIDHIRNSASFSLDALDILVIDEADRILSEGFSD 361
Query: 201 DLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF 260
+L + PR Q +L SAT + VD+L ++ L P L + D K +Q+F
Sbjct: 362 ELTEIIKSCPRSRQTMLFSATMTDSVDELVRVSLEKPVRLFV----DPKRTTARGLIQEF 417
Query: 261 --WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELP 318
+ E ++ ++TL + +++ ++F + +A ++++ G+K L+ +L
Sbjct: 418 VRVRAGKEAERSAMLVTLCR-RTFKRRVIVFLRSKKLAHQMRIVFSLLGMKCEELHGDLS 476
Query: 319 QNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVR 378
Q RL L+ F D+L+ATD L S R
Sbjct: 477 QEQRLRALQLFRDDAVDFLMATD----------------------------LAS-----R 503
Query: 379 GIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFE-EIKSFVGD 437
G+D K V TVIN++MP A Y+HR+GRT RA G +V+LV + K+ IK +
Sbjct: 504 GLDIKGVETVINYDMPTQLAQYLHRVGRTARAGRGGRAVTLVGEADRKMLRAAIKHAAAE 563
Query: 438 DENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAH 497
D+ + + P E+L++ ++ + + +++ + LR E + LKA
Sbjct: 564 DQVR--HRVLP--------TEALQHWSDKL------VELKDEISHVLREEKEEKQMLKAE 607
Query: 498 FEVNPKDLDLLKHDKDLSKKPPASHL-----RDVPDYLLDAKTQEACKMVKLARAAMGN- 551
EV K +L++H ++ +P + + + + ++ K + +AA
Sbjct: 608 MEVK-KGQNLIEHQNEIFSRPARTWFQTGQEKKASQTISKNEHEQGSKPTQRPKAAANTQ 666
Query: 552 KNSSRRQGPRRKF 564
K+S+ R+ RRK
Sbjct: 667 KHSTTRKAKRRKI 679
>gi|145353647|ref|XP_001421118.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581354|gb|ABO99411.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 755
Score = 202 bits (514), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 163/545 (29%), Positives = 258/545 (47%), Gaps = 73/545 (13%)
Query: 26 KSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLL 85
K+F+EL L L A G +KPT IQ A IP+ + G+DV RA TGSGKT A++LP L
Sbjct: 148 KAFDELHLSRPLTRACEALGYKKPTPIQAAVIPIAMTGRDVCGRAVTGSGKTAAFMLPQL 207
Query: 86 HRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASD 145
R+ + P+ A LVLVPTREL QV+ +L + + L V L++++ A+
Sbjct: 208 ERMLHR-GPRPAAATHVLVLVPTRELAVQVHQMTESLAQFTTIRAVLVVGGLSANVQAAA 266
Query: 146 LRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKA 204
LR P+IV+ATPG + V + SF + L L+LDEAD LL G+ +++K
Sbjct: 267 LRTR----PEIVVATPGRVIDH----VRNTHSFGLEDLATLILDEADRLLEMGFLEEIKE 318
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264
+ P+ Q LL SAT ++ V+ L L + NP L+ +G ++ + ++
Sbjct: 319 IVRQCPKKRQTLLFSATLTAGVEALASLSMKNPARLSADTLGTTPKRLVEEVLKLKPNQS 378
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
++++ L + + K +IF+ T A RLK+ + IK+ L+ ++ Q RL
Sbjct: 379 AQKEAFLMAIVSRSYD---KSTIIFSQTKQEAHRLKIIMGLSDIKAGELHGDMTQTQRLA 435
Query: 325 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 384
L+EF G +LIATD RG+D +
Sbjct: 436 ALDEFRTGTVTHLIATDV---------------------------------AARGLDIPS 462
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSN 444
V VI+F+ P+ A Y+HR+GRT RA G +++ + + K+ +K+ N +
Sbjct: 463 VDAVISFDAPKTLASYLHRVGRTARAGKKGTALTFMEESDRKL---VKTIAKRGANLKAR 519
Query: 445 IIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKD 504
I+ N V + ED+ + + +I E + L+ KA E N K
Sbjct: 520 IV------PGNIVAEWHKKIEDMEEQIVQINYEERTERQLQ---------KAEMEAN-KA 563
Query: 505 LDLLKHDKDLSKKPPASHL---RDVPDYLLDA-KTQEACKMVKLARAAMGNKNSSRRQ-- 558
++L+H ++ +P + RD + DA K E +M + R + K + RRQ
Sbjct: 564 SNILEHAAEIKSRPAKTWFQSERDKRNAQKDALKAMETAEMDLMDRKSH-RKGAKRRQEA 622
Query: 559 -GPRR 562
GP R
Sbjct: 623 AGPDR 627
>gi|449684384|ref|XP_002156411.2| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
DDX27-like [Hydra magnipapillata]
Length = 544
Score = 202 bits (514), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 153/495 (30%), Positives = 239/495 (48%), Gaps = 65/495 (13%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
+ L L+ A+N+ G + PT IQ ++IP+ L GKD+ A A TGSGKT A++LP+L RL
Sbjct: 1 MNLSRPLLKAINELGFEHPTKIQSSTIPIALLGKDLCACATTGSGKTAAFMLPILERLLF 60
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
+ PK L++ + C VYS +L + Q+ L T + + A L
Sbjct: 61 K--PKQTAXTKILLVFICKNFCVXVYSVSESLAKFSNIQLGLA----TGGLDSRSQEAIL 114
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVI 209
PD+VIATPG + L + SF+ +++ILVLDEAD +L + D +K + +
Sbjct: 115 RKNPDVVIATPGRLIDHLH----NTPSFNLQTIEILVLDEADRMLEEHFHDQMKEIIRLC 170
Query: 210 PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDK 269
PRG Q +L SAT + +V+ L L L+NP L + + DV + + V+ S E D+
Sbjct: 171 PRGRQTMLFSATMTDEVNALMSLSLNNPVKLFVDQNTDVASSLHQEFVR--IRSTREADR 228
Query: 270 LLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 329
L ++ L Q + L+F T +A +L++ FG+K+A L+ L Q RL LE+F
Sbjct: 229 LAVVVALCCRSFNQ-QTLVFLQTKVLAHKLRIIFGLFGLKAAELHGNLTQLQRLEALEKF 287
Query: 330 NAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVI 389
D L+ATD RG+D V TVI
Sbjct: 288 KNNEVDILVATD---------------------------------LAARGLDIVGVKTVI 314
Query: 390 NFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPF 449
+F MP Y+HR+GRT RA G S++LV E K+ +E+ +++ I
Sbjct: 315 SFNMPTTIKSYIHRVGRTARAGKAGRSITLVGEKERKMLKEVV--------KNAKIPVKN 366
Query: 450 PLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLK 509
+L+ VE + + E K + +I E A+ LR A E+N K +L++
Sbjct: 367 RILSTEVVEKYKNKLESFEKDIKEILKEEESAKQLR---------VAEMEMN-KAKNLIE 416
Query: 510 HDKDLSKKPPASHLR 524
H ++ +P + ++
Sbjct: 417 HHDEIMSRPAKTFIK 431
>gi|126173892|ref|YP_001050041.1| DEAD/DEAH box helicase [Shewanella baltica OS155]
gi|386340652|ref|YP_006037018.1| DEAD/DEAH box helicase [Shewanella baltica OS117]
gi|125997097|gb|ABN61172.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
gi|334863053|gb|AEH13524.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS117]
Length = 451
Score = 202 bits (514), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 139/410 (33%), Positives = 207/410 (50%), Gaps = 49/410 (11%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F + LD RL+ ++ GI +PT IQ+ ++P+ L GKD++A +KTGSGKT A+LLP L R
Sbjct: 3 FTDFSLDQRLLQSIKHMGITEPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQR 62
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+ + S SK P L+L+PTREL QVYS++ L+ Q K + + +D
Sbjct: 63 VISTRS-LSKRDPRVLILLPTRELAHQVYSQLRLLV----ANTQYKAISVLGGENFNDQA 117
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS- 206
ALA P ++ATPG + L Q F + L++LVLDEAD +L G+ LKA++
Sbjct: 118 KALAKEPHFIVATPGRIADHLE----QKHLFLNGLELLVLDEADRMLDLGFAPQLKAIND 173
Query: 207 AVIPRGCQCLLMSATSSSD-VDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
A + Q L+ SAT D ++ + +L NP + +G E ++ Q C
Sbjct: 174 AADHKRRQTLMFSATLDHDEINDIAATLLKNPAHVA---IGAAHSE--HNDIHQRIFLCD 228
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
D +L L + K+ +IFT T RL L + G +A L+ +L Q +R I
Sbjct: 229 HLDHKEALLARLLKDETHKQVIIFTATRPDTERLAAKLIEQGFATAALSGDLKQAARNQI 288
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
+++F G L+ TD RG+D NV
Sbjct: 289 MDQFARGQQQVLVTTDVAS---------------------------------RGLDLLNV 315
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
V+NF+MP+ A YVHRIGRTGRA G ++SLV P + F++++ F+
Sbjct: 316 SLVVNFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDNFKKVQVFL 365
>gi|58266632|ref|XP_570472.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|134110998|ref|XP_775963.1| hypothetical protein CNBD3700 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338818015|sp|P0CQ93.1|DRS1_CRYNB RecName: Full=ATP-dependent RNA helicase DRS1
gi|338818016|sp|P0CQ92.1|DRS1_CRYNJ RecName: Full=ATP-dependent RNA helicase DRS1
gi|50258629|gb|EAL21316.1| hypothetical protein CNBD3700 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226705|gb|AAW43165.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 808
Score = 202 bits (513), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 142/404 (35%), Positives = 202/404 (50%), Gaps = 45/404 (11%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF + L L+ AL PT IQ +IPL L G+D++ A TGSGKT A+++P+L
Sbjct: 223 SFTAMNLSRPLLRALTSLQFTAPTPIQARAIPLALLGRDILGSAVTGSGKTAAFMVPILE 282
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
RL K A LVL PTREL Q + AL E KG + ++ L + +
Sbjct: 283 RLCYRDRGKGGAACRVLVLCPTRELAVQCEAVGKALAE--KGGLDVRFALLVGGLSLNAQ 340
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKAL 205
L PDI+IATPG + L+ + SF+ +L +LV+DEAD +L G+ D+L+ +
Sbjct: 341 AHTLRTLPDILIATPGRLIDHLT----NTPSFTLSALDVLVIDEADRMLEAGFTDELEEI 396
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
PR Q +L SAT + VD+L KL L P + + D K Q+F S
Sbjct: 397 IKACPRSRQTMLFSATMTDSVDELVKLSLDKPIRVFV----DPKRNTARGLTQEFVRIRS 452
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
+ + +L L K +++K +IF + +A ++++ FG+K+A L+ L Q RL
Sbjct: 453 DDSRSPSLLALCK-RTIREKCIIFFRSKALAHQMRIVFGLFGLKAAELHGNLTQEQRLQA 511
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
L +F AG DYL+ATD L S RG+D K V
Sbjct: 512 LNDFKAGTVDYLLATD----------------------------LAS-----RGLDIKGV 538
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFE 429
TVIN++MP A Y HR+GRT RA G SVSLV + K+ +
Sbjct: 539 ETVINYDMPGQLAQYTHRVGRTARAGRKGRSVSLVGEADRKMLK 582
>gi|261189897|ref|XP_002621359.1| 2-isopropylmalate synthase [Ajellomyces dermatitidis SLH14081]
gi|239591595|gb|EEQ74176.1| 2-isopropylmalate synthase [Ajellomyces dermatitidis SLH14081]
Length = 834
Score = 201 bits (512), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 135/409 (33%), Positives = 201/409 (49%), Gaps = 53/409 (12%)
Query: 23 EEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLL 82
E KSF+ L ++ L G PT IQQ +IP+ L GKDVV A TGSGKT A+++
Sbjct: 308 EPAKSFQAFSLSRPILRGLTSVGFTTPTPIQQKTIPVALLGKDVVGGAVTGSGKTGAFII 367
Query: 83 PLLHRLFNESS--PKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSS 140
P+L RL P S++A +L+PTREL Q Y+ L + QL
Sbjct: 368 PILERLLYRPRKVPTSRVA----ILMPTRELAVQCYNVATKLATFT----DITFCQLVGG 419
Query: 141 MPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYE 199
+ L PD++IATPG + S SF+ D+L+ILVLDEAD +L G+
Sbjct: 420 FSLREQENILKKRPDVIIATPGRFIDHMRN----SASFTVDTLEILVLDEADRMLEDGFA 475
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
D+L + IP+ Q +L SAT +++VDKL ++ L+ P L + D K + + VQ+
Sbjct: 476 DELNEILTTIPKSRQTMLFSATMTNNVDKLIRVGLNRPVRLMV----DAKKQTVGTLVQE 531
Query: 260 F-WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELP 318
F + DK L L +L + + + +IF A R+++ G+K+A L+ +
Sbjct: 532 FVRLRPGREDKRLGYLMVLCKTIYKDRVIIFFRAKKEAHRVRIIFGLMGLKAAELHGSMS 591
Query: 319 QNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVR 378
Q R+ +E F G +L+ATD R
Sbjct: 592 QEQRIKSVESFRDGKVSFLLATDVAS---------------------------------R 618
Query: 379 GIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 427
G+D K V TVIN+E PQ+ Y+HR+GRT RA +G + +L + + K+
Sbjct: 619 GLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKV 667
>gi|423201022|ref|ZP_17187602.1| hypothetical protein HMPREF1167_01185 [Aeromonas veronii AER39]
gi|404618005|gb|EKB14926.1| hypothetical protein HMPREF1167_01185 [Aeromonas veronii AER39]
Length = 416
Score = 201 bits (512), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 149/415 (35%), Positives = 212/415 (51%), Gaps = 59/415 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF EL L RL L + G PT IQ +IP+IL G+D++A A+TG+GKT A++LPLL
Sbjct: 5 SFAELALSPRLQQTLIELGYAAPTPIQARAIPVILAGRDLMAGAQTGTGKTAAFVLPLLE 64
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
+L + S+ ALVLVPTREL QV V +G + A+ +
Sbjct: 65 QLLAQPQMASQRPIRALVLVPTRELAVQVAESVA---RYGQGTGLTSTLVYGGVSIAAQV 121
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
A AG DI+IATPG + L G L DSL+ LV DEAD +L G+ D++KAL
Sbjct: 122 EALQAG-VDILIATPGRLLDHLRQGALS----LDSLRHLVFDEADRMLDMGFMDEIKALL 176
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNV------QQF 260
IP Q LL SAT ++ L K++LH+P ++ EV P+N Q+
Sbjct: 177 KQIPADRQTLLFSATCDDNLFTLSKVLLHDPELI----------EVAPRNTTAAEVEQRV 226
Query: 261 WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 320
+ S+R KL + +LK++ ALIF+ T A +L L K GI + + +L Q+
Sbjct: 227 YTVDSDR-KLALVEHMLKVK-GWAPALIFSRTRQGADKLAQQLGKAGINALAFHGDLSQS 284
Query: 321 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 380
+R +L EF AG L+ATD RG+
Sbjct: 285 AREKVLLEFRAGTLQALVATDVA---------------------------------ARGL 311
Query: 381 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
D +++ VIN E P A YVHRIGRTGRA N G +++L SP++ + E++++ +
Sbjct: 312 DITDLNYVINLEFPFVAEDYVHRIGRTGRAGNKGLAITLFSPEDAPLLEKVEAVL 366
>gi|428164262|gb|EKX33294.1| hypothetical protein GUITHDRAFT_81602 [Guillardia theta CCMP2712]
Length = 679
Score = 201 bits (511), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 153/510 (30%), Positives = 244/510 (47%), Gaps = 73/510 (14%)
Query: 21 EAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAY 80
++ E SF+EL L L+ A++ G KPT+IQ IP+ L+GKDV A ++TGSGKT A+
Sbjct: 108 QSAETSSFQELHLSRPLLKAVSSLGFIKPTVIQSMVIPVALQGKDVCASSRTGSGKTAAF 167
Query: 81 LLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSS 140
LP+L RL P+ A LVL PTREL Q ++ + L + + + + +
Sbjct: 168 ALPILERLL--YRPRRVAATRVLVLTPTRELAVQAHAMMEKLAAFTDIRCYIVIGGVKNQ 225
Query: 141 MPASDLRAALAGPPDIVIATPGCMPKCL--STGVLQSKSFSDSLKILVLDEADLLLSYGY 198
+ ++LR PD+V+ATPG M L + G+ F ++L+ILVLDEAD LL G+
Sbjct: 226 LQETELRK----KPDVVVATPGRMIDHLRNAPGI----GF-EALEILVLDEADRLLEMGF 276
Query: 199 EDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPY-------ILTLPEVGDVKDE 251
++++ L + P+ Q +L SAT + DVDKL L P I T G +
Sbjct: 277 TEEVQELVKMCPQQRQTMLFSATMTHDVDKLAAFSLRRPVRVTADGSIRTDETQGTLNKV 336
Query: 252 VIPKNVQQFWISCS---ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGI 308
+P ++ Q ++ E+D+ +L L K+ ++F A RL++ G+
Sbjct: 337 AVPSSLLQEFVRIRKEHEKDREAILLCLC-TRTFHKRTIVFCREKRRAHRLRIIFGLLGL 395
Query: 309 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA 368
+ L+ L Q RL LE F D+L+ATD
Sbjct: 396 RVEELHGNLTQAQRLEALENFKEEKSDFLLATDLAG------------------------ 431
Query: 369 KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF 428
RG+D K V V+N E+P+N A YVHR+GRT RA G +V+L + D +
Sbjct: 432 ---------RGLDIKGVDVVVNLEVPRNLAEYVHRVGRTARAGRKGRAVTL-ADDSQRTK 481
Query: 429 EEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEI 488
+K V + + P +A+ ++R R E++ V + E+ + +R
Sbjct: 482 SMLKEVVRSAPDVVKRRVVP-----PDAIAAMRSRIEELEADVAAVMEEEAVERQMRIAD 536
Query: 489 LNSEKLKAHFEVNPKDLDLLKHDKDLSKKP 518
+ EK + +L++H++D+ +P
Sbjct: 537 MEGEKAR----------NLVEHEEDILARP 556
>gi|145481669|ref|XP_001426857.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124393934|emb|CAK59459.1| unnamed protein product [Paramecium tetraurelia]
Length = 542
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 155/501 (30%), Positives = 237/501 (47%), Gaps = 89/501 (17%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F++L L+ LV A +++G + PT IQ +PL+L GKDV+A + TGSGKT A+LLPL+ R
Sbjct: 93 FQQLKLNKSLVKACHEQGYKYPTKIQAQIVPLVLAGKDVLASSCTGSGKTAAFLLPLMQR 152
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
N S K AL+++PTREL Q + L + L + ++P
Sbjct: 153 FGNTKSQK---YSKALIVMPTRELALQCFEMFQKLNQFSHCTAAL----VIGAVPIQQQE 205
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFS---DSLKILVLDEADLLLSYGYEDDLKA 204
A L PDI+IATPG + + SFS S+++LVLDEAD L+ G+E ++K
Sbjct: 206 AELRRYPDIIIATPGRIVDIMKN------SFSIDLSSIEVLVLDEADRLMEMGFEAEIKE 259
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWI-- 262
+ PR Q +L+SAT + V +L L LH P +++ V + ++Q+ +
Sbjct: 260 ILQQTPRDRQTVLVSATLKATVKQLSLLALHKPVKVSVDYVDG-----LAYGLKQYILRI 314
Query: 263 -SCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 321
S E+D+ ++ LL+ + ++ K +IF T RL++ L + S L+ L Q
Sbjct: 315 DSDEEKDREATLIALLQQKFIE-KTIIFVRTKHDCHRLQILLGLKNLSSCELHGNLTQQQ 373
Query: 322 RLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGID 381
R+ E+F G F YL+ATD RG+D
Sbjct: 374 RIQAYEDFKEGKFQYLLATD---------------------------------LAARGLD 400
Query: 382 FKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF------------- 428
NV VINFE+P + Y+HR+GRT R N G SV++ E+ F
Sbjct: 401 IANVKAVINFEIPYETSRYIHRVGRTARIGNQGVSVTICLKKEVSQFKQMIKESKQKLFK 460
Query: 429 --------EEIKSFVGDDENEDSNIIA---------PFPLLAQNAVESLRYRAEDVAKSV 471
EEIKS + E + II +LAQ A +++R E + +
Sbjct: 461 LNFNIESIEEIKSDLKSLEPKIKKIIKGEVFEKEIHQTEILAQRAQNLIQHRVE-IMRKP 519
Query: 472 TKIAVRESRAQDLRNEILNSE 492
K ++ ++ + LRN+I E
Sbjct: 520 KKEWIQSAQQKKLRNQIQQEE 540
>gi|423687836|ref|ZP_17662639.1| ATP-dependent RNA helicase [Vibrio fischeri SR5]
gi|371493024|gb|EHN68628.1| ATP-dependent RNA helicase [Vibrio fischeri SR5]
Length = 445
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 138/413 (33%), Positives = 212/413 (51%), Gaps = 49/413 (11%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F++LGLD RL+ L + I+KPT IQ+ ++P+ + GKDV+A +KTGSGKT A++LP+LH+
Sbjct: 3 FKDLGLDNRLLKNLAHQNIKKPTEIQRKAVPVAIAGKDVLASSKTGSGKTLAFVLPMLHK 62
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
S SK P A++L PTREL +QVYS + A++ G + +T +D
Sbjct: 63 SLKTKSF-SKNDPRAVILAPTRELAKQVYSHLRAML----GGLTYDATLITGGENFNDQV 117
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS- 206
AL P ++ATPG + L L + D L+ L+LDEAD +L G+ + L+ +
Sbjct: 118 NALRKHPKFIVATPGRLADHLEHQSL----YLDGLETLILDEADRMLDLGFAEHLQKIHK 173
Query: 207 AVIPRGCQCLLMSATSSSD-VDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
A R Q L+ SAT D V+K +L NP ++ VG DE K++ Q + C
Sbjct: 174 AASHRRRQTLMFSATLDHDAVNKFAGNMLDNPKRIS---VGLSNDE--HKDITQRFYLCD 228
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
D IL + + +IFT T RL L + +K+ L+ ++ Q +R +I
Sbjct: 229 HLDHKQAILNKIIETEDYFQIMIFTATRSDTDRLTKLLNEENLKAVALSGDMNQTARNNI 288
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
+ +F + L+ TD RG+D +V
Sbjct: 289 MSQFERRVHKILVTTDVAS---------------------------------RGLDLTSV 315
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD 438
VINF+MP++ YVHR+GRTGRA G ++SLV P + + F+ +++F+ D
Sbjct: 316 THVINFDMPKHMEEYVHRVGRTGRAGKKGTAISLVGPKDWESFKRVETFLQQD 368
>gi|353237187|emb|CCA69166.1| related to DRS1-RNA helicase of the DEAD box family [Piriformospora
indica DSM 11827]
Length = 767
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 143/416 (34%), Positives = 207/416 (49%), Gaps = 47/416 (11%)
Query: 15 AEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGS 74
A EEE + +F + L ++ +L PT IQ A+IP+ L GKD+V A TGS
Sbjct: 165 AAEEEQMQDMPSTFLTMNLSRPIMKSLTSLSFHTPTPIQAATIPVALLGKDIVGNAVTGS 224
Query: 75 GKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKV 134
GKT A+++P+L RL K+ A LVLVPTREL Q + L Q+ L V
Sbjct: 225 GKTAAFMIPILERLLYRQKGKNAAATRCLVLVPTRELAVQCFEVGTKLAAHTDIQMSLVV 284
Query: 135 VQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLL 193
L S+ A + A L PD+VIATPG + L S +F+ D+L +LVLDEAD +
Sbjct: 285 GGL--SLKAQE--ATLRSKPDLVIATPGRLIDHLRN----SPTFNLDALDVLVLDEADRM 336
Query: 194 LSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVI 253
LS G+ D+L+ + PR Q +L SAT + VD+L K+ L+ P L + D K
Sbjct: 337 LSDGFADELEEIVKSCPRSRQTMLFSATMTDSVDELVKMSLNKPVRLFV----DPKRATA 392
Query: 254 PKNVQQF-WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAI 312
VQ+F + + IL L +++ +IF + +A ++++ +++
Sbjct: 393 KGLVQEFVRVKAGRESERAAILVTLCKRTFRERVIIFFRSKKLAHQMRIMFGLLDMRADE 452
Query: 313 LNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDS 372
L+ +L Q RL L+ F G DYL+ATD L S
Sbjct: 453 LHGDLTQEQRLTSLQAFRDGKVDYLMATD----------------------------LAS 484
Query: 373 EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF 428
RG+D K + TVIN++MP A Y+HR+GRT RA G SV+LV + K+
Sbjct: 485 -----RGLDIKGIETVINYDMPGQLAQYLHRVGRTARAGKNGRSVTLVGEADRKML 535
>gi|226509858|ref|NP_001147574.1| ATP-dependent RNA helicase DRS1 [Zea mays]
gi|195612276|gb|ACG27968.1| ATP-dependent RNA helicase DRS1 [Zea mays]
Length = 770
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 149/433 (34%), Positives = 211/433 (48%), Gaps = 63/433 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF EL L LV A G QKPT IQ A IPL L G+D+ A TGSGKT A+ LP+L
Sbjct: 163 SFLELNLSRPLVRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLE 222
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
RL PK A L+L PTREL QV+S + L + + L V L++ + L
Sbjct: 223 RLLFR--PKRVPAIRVLILTPTRELAAQVHSMIEKLAQFTDIRCCLIVGGLSTKVQEVAL 280
Query: 147 RAALAGPPDIVIATPG----CMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 202
R+ PDIV+ATPG + LS G+ + L +++LDEAD LL G+ ++
Sbjct: 281 RSM----PDIVVATPGRIIDHLRNSLSVGL-------EDLAVVILDEADRLLELGFSAEI 329
Query: 203 KALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL----TLPEVGDVKDEVIPKNVQ 258
+ L + P+ Q +L SAT + ++D+L KL L+ P L +L + +EV+ ++
Sbjct: 330 QELIRMCPKRRQTMLFSATMTEEIDELIKLSLNKPVRLEADPSLKRPATLTEEVV--RIR 387
Query: 259 QFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELP 318
+ S E +L L L+ ++ +IF+ T A RLK+ G+K+A L+ L
Sbjct: 388 RARESNQE-----AVLLALCLKTFKRSVIIFSGTKQSAHRLKIIFGLSGMKAAELHGNLT 442
Query: 319 QNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVR 378
Q RL LE F D+LIATD R
Sbjct: 443 QAQRLEALELFRKQEVDFLIATD---------------------------------VAAR 469
Query: 379 GIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD 438
GID V TVINF P++ Y+HR+GRT RA G +V+ V+ D+ + + I G
Sbjct: 470 GIDIVGVQTVINFACPRDVKTYLHRVGRTARAGREGYAVTFVTDDDRSLLKAIAKKAGSQ 529
Query: 439 ENEDSNIIAPFPL 451
S I+A P+
Sbjct: 530 LK--SRIVAEKPV 540
>gi|388580558|gb|EIM20872.1| DEAD-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 801
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 165/503 (32%), Positives = 246/503 (48%), Gaps = 72/503 (14%)
Query: 15 AEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGS 74
A++ A ++ +F LGL ++ A++ G PT IQ+ +P+ L GKDVV +A TGS
Sbjct: 194 AQQPTASTNKKNTFTSLGLSRPILKAISGLGFTHPTPIQKTVMPVALAGKDVVGQAVTGS 253
Query: 75 GKTFAYLLPLLHRLFNESSPKSKLAPA-ALVLVPTRELCQQVY------SEVMALIE--L 125
GKT A++LP+L RL SK LVL PTREL QQ + S+ M I L
Sbjct: 254 GKTAAFILPVLERLMYRPKTSSKGGETRVLVLCPTRELAQQCFEVGQSLSKFMGDISFCL 313
Query: 126 CKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKI 184
C G + LK+ + L PD+VIATPG L V S SF+ D+L I
Sbjct: 314 CVGGLSLKLQE-----------QQLKQRPDVVIATPG----RLIDHVRNSPSFTLDALDI 358
Query: 185 LVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPE 244
L++DEAD +L G++D+L + P+ Q +L SAT + VD+L +L L+ P L +
Sbjct: 359 LIMDEADRMLEDGFKDELDEIVKECPKNRQTMLFSATMTDKVDELVRLSLNKPVRLFV-- 416
Query: 245 VGDVKDEVIPKNVQQF--WISCSERDKLLYILTLLKL--ELVQKKALIFTNTIDMAFRLK 300
D K Q+F S S+ D TLL L +++ +IF + +A R++
Sbjct: 417 --DPKKSTAKGLTQEFVRIRSNSKNDLKERTATLLSLCRRTFKQRTIIFFRSKALAHRMR 474
Query: 301 LFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSR 360
+ + + L+ +L Q RL+ LE F DYL+ATD
Sbjct: 475 IMFGLMELNAEELHGDLSQEQRLNALERFKNQKSDYLLATD------------------- 515
Query: 361 KSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLV 420
L S RG+D K V TVINF++P Y+HR+GRT RA +G SVSL+
Sbjct: 516 ---------LAS-----RGLDIKGVETVINFDLPNQIEIYLHRVGRTARAGTSGRSVSLI 561
Query: 421 SPDEMKIFEEI-KSFVGDDENEDSNIIAPFPLLAQNA--VESLRYRAEDVAKSVTK---I 474
+ K+ + I K + + I P +L+ A VESL+ + +++ K + I
Sbjct: 562 GETDRKMLKNIVKRSSAQSTDSIKHRIVPTDVLSDVAELVESLQDQIDEILKEEKEDRAI 621
Query: 475 AVRESRAQDLRNEILNSEKLKAH 497
V E Q +N I + +++K+
Sbjct: 622 RVAEMELQKSKNMIEHEDEIKSR 644
>gi|392551533|ref|ZP_10298670.1| DEAD/DEAH box helicase [Pseudoalteromonas spongiae UST010723-006]
Length = 444
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 138/412 (33%), Positives = 218/412 (52%), Gaps = 51/412 (12%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SFE+LG+D R+ L+ GI PT IQQ ++P+ + G D++A++KTGSGKTFA+LLP +
Sbjct: 2 SFEDLGVDKRIASQLSHIGITTPTDIQQQAVPVAIAGHDLLAQSKTGSGKTFAFLLPAIT 61
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
RL ++ SK P AL++ PTREL QVY ++ +I LK ++ +D
Sbjct: 62 RL-SKQKALSKRDPRALIITPTRELANQVYKQLTLII----AGTGLKATKIVGGDNYNDQ 116
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL- 205
AL+ P V+ATPG + L + + L++L+LDEAD +L G+++ ++ +
Sbjct: 117 VKALSKDPQFVVATPGRLVDHLD----DRNFYLEGLELLILDEADRVLELGFKEQIEKIN 172
Query: 206 SAVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264
+A R Q L SAT ++VD L + +L NP +T+ +++ Q+F+++
Sbjct: 173 TAANHRLRQTLFFSATLEHAEVDALSRNLLKNPKRVTIDASTQEHNDI----TQKFFLAD 228
Query: 265 SERDKL-LYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
K+ L I T E Q+ ++FT T D +L LE+ G K+ L+ ++ Q+ R
Sbjct: 229 HLDHKIALLIATTKSAESGQQ--IVFTATRDDTIKLSEILEQEGYKTLALSGDMNQSKRN 286
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
I++ F+ G L+ TD RG+D
Sbjct: 287 SIMDAFSRGQAQILVTTDVAS---------------------------------RGLDLL 313
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
NV VINF++P+ A YVHRIGRTGRA G ++SLVS + + F+ I+S++
Sbjct: 314 NVSQVINFDLPKQAEEYVHRIGRTGRAGFKGNALSLVSAKDWQSFKAIESYL 365
>gi|120599366|ref|YP_963940.1| DEAD/DEAH box helicase [Shewanella sp. W3-18-1]
gi|146292637|ref|YP_001183061.1| DEAD/DEAH box helicase [Shewanella putrefaciens CN-32]
gi|120559459|gb|ABM25386.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
gi|145564327|gb|ABP75262.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
CN-32]
Length = 449
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 137/410 (33%), Positives = 205/410 (50%), Gaps = 49/410 (11%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F + LD RL+ +L GI PT IQ+ ++P+ L GKD++A +KTGSGKT A+LLP L R
Sbjct: 3 FTDFSLDQRLLQSLKHMGITAPTAIQEQTLPIALAGKDLMASSKTGSGKTLAFLLPALQR 62
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+ + S SK P L+L+PTREL QVYS++ L+ Q K + + +D
Sbjct: 63 VISTRS-LSKRDPRVLILLPTRELAHQVYSQLRLLV----ANTQYKAISVLGGENFNDQA 117
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS- 206
ALA P ++ATPG + L Q F + L++L+LDEAD +L G+ LK ++
Sbjct: 118 KALAKEPHFIVATPGRIADHLE----QKHLFLNGLELLILDEADRMLDLGFAPQLKTINE 173
Query: 207 AVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
A + Q L+ SAT S+++ + +L NP + + ++ + Q C
Sbjct: 174 AADHKRRQTLMFSATLDHSEINDIAATLLKNPAHVAIDASHSEHND-----IHQRIFLCD 228
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
D +LT L + K+ ++FT T RL L G +A L+ +L Q +R I
Sbjct: 229 HLDHKEALLTRLLQDETHKQVIVFTATRPDTERLAAKLSTQGFATAALSGDLKQAARNQI 288
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
+++F G L+ TD RG+D NV
Sbjct: 289 MDQFARGQQQILVTTDVAS---------------------------------RGLDLLNV 315
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
VINF+MP+ A YVHRIGRTGRA G ++SLV P + F++++ F+
Sbjct: 316 SLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDNFKKVQIFL 365
>gi|217973860|ref|YP_002358611.1| DEAD/DEAH box helicase [Shewanella baltica OS223]
gi|217498995|gb|ACK47188.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
Length = 451
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 138/410 (33%), Positives = 207/410 (50%), Gaps = 49/410 (11%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F + LD RL+ ++ GI +PT IQ+ ++P+ L GKD++A +KTGSGKT A+LLP L R
Sbjct: 3 FTDFSLDQRLLQSIKHMGITEPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQR 62
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+ + S SK P L+L+PTREL QVYS++ L+ Q K + + +D
Sbjct: 63 VISTRS-LSKRDPRVLILLPTRELAHQVYSQLRLLV----ANTQYKAISVLGGENFNDQA 117
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS- 206
ALA P ++ATPG + L Q F + L++LVLDEAD +L G+ LKA++
Sbjct: 118 KALAKEPHFIVATPGRIADHLE----QKHLFLNGLELLVLDEADRMLDLGFAPQLKAIND 173
Query: 207 AVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
A + Q L+ SAT +++ + +L NP + +G E ++ Q C
Sbjct: 174 AADHKRRQTLMFSATLDHYEINDIAATLLKNPAHVA---IGAAHSE--HNDIHQRIFLCD 228
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
D +L L + K+ +IFT T RL L + G +A L+ +L Q +R I
Sbjct: 229 HLDHKEALLARLLKDETHKQVIIFTATRPDTERLAAKLIEQGFATAALSGDLKQAARNQI 288
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
+++F G L+ TD RG+D NV
Sbjct: 289 MDQFARGQQQVLVTTDVAS---------------------------------RGLDLLNV 315
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
V+NF+MP+ A YVHRIGRTGRA G ++SLV P + F++++ F+
Sbjct: 316 SLVVNFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDNFKKVQVFL 365
>gi|386313316|ref|YP_006009481.1| DEAD/DEAH box helicase [Shewanella putrefaciens 200]
gi|319425941|gb|ADV54015.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
Length = 449
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 137/410 (33%), Positives = 205/410 (50%), Gaps = 49/410 (11%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F + LD RL+ +L GI PT IQ+ ++P+ L GKD++A +KTGSGKT A+LLP L R
Sbjct: 3 FTDFSLDQRLLQSLKHMGITAPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQR 62
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+ + S SK P L+L+PTREL QVYS++ L+ Q K + + +D
Sbjct: 63 VISTRS-LSKRDPRVLILLPTRELAHQVYSQLRLLV----ANTQYKAISVLGGENFNDQA 117
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS- 206
ALA P ++ATPG + L Q F + L++L+LDEAD +L G+ LK ++
Sbjct: 118 KALAKEPHFIVATPGRIADHLE----QKHLFLNGLELLILDEADRMLDLGFAPQLKTINE 173
Query: 207 AVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
A + Q L+ SAT S+++ + +L NP + + ++ + Q C
Sbjct: 174 AADHKRRQTLMFSATLDHSEINDIAATLLKNPAHVAIDASHSEHND-----IHQRIFLCD 228
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
D +LT L + K+ ++FT T RL L G +A L+ +L Q +R I
Sbjct: 229 HLDHKEALLTRLLQDETHKQVIVFTATRPDTERLAAKLSTQGFATAALSGDLKQAARNQI 288
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
+++F G L+ TD RG+D NV
Sbjct: 289 MDQFARGQQQILVTTDVAS---------------------------------RGLDLLNV 315
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
VINF+MP+ A YVHRIGRTGRA G ++SLV P + F++++ F+
Sbjct: 316 SLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDNFKKVQIFL 365
>gi|390604335|gb|EIN13726.1| DEAD-domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 785
Score = 200 bits (509), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 146/421 (34%), Positives = 205/421 (48%), Gaps = 48/421 (11%)
Query: 22 AEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYL 81
+E +F + L ++ A+ KPT IQ A+IP+ L GKDVV A TGSGKT A++
Sbjct: 194 SETHSTFLSMNLSRPILKAITSLSFHKPTPIQAATIPVALLGKDVVGNAVTGSGKTAAFI 253
Query: 82 LPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSM 141
+P+L RL K A LVLVPTREL Q + L + L V L+
Sbjct: 254 IPMLERLLYRDRAKKSAATRCLVLVPTRELGVQCFEVGTKLATYTDIRFCLAVGGLS--- 310
Query: 142 PASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYED 200
AAL PD+VIATPG + L S SF+ D+L ILVLDEAD +LS G+ D
Sbjct: 311 -VKSQEAALRSKPDVVIATPGRLIDHLRN----SPSFNLDALDILVLDEADRMLSDGFAD 365
Query: 201 DLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF 260
+L + P+ Q +L SAT + VD+L K+ L P L + D K +Q+F
Sbjct: 366 ELAEIIKSCPKSRQTMLFSATMTDSVDELVKMSLDKPVRLFV----DPKRSTAKGLIQEF 421
Query: 261 -WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+ + + IL L + +IF + +A ++++ +K A L+ +L Q
Sbjct: 422 VRVRAGKESERSAILVALCKRTFKSGVIIFFRSKKLAHQMRIVFSLLYMKCAELHGDLTQ 481
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
RL L++F G D+L+ATD L S RG
Sbjct: 482 EQRLKALQQFRDGSVDFLMATD----------------------------LAS-----RG 508
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFE-EIKSFVGDD 438
+D K V VIN++MP A Y+HR+GRT RA G SV+LV + K+ + IK GDD
Sbjct: 509 LDIKGVDIVINYDMPGQLAQYLHRVGRTARAGKKGRSVTLVGEADRKMLKAAIKHGAGDD 568
Query: 439 E 439
+
Sbjct: 569 Q 569
>gi|414589946|tpg|DAA40517.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 773
Score = 200 bits (509), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 149/433 (34%), Positives = 211/433 (48%), Gaps = 63/433 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF EL L LV A G QKPT IQ A IPL L G+D+ A TGSGKT A+ LP+L
Sbjct: 168 SFLELNLSRPLVRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLE 227
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
RL PK A L+L PTREL Q++S V L + + L V L++ + L
Sbjct: 228 RLLFR--PKRVPAIRVLILTPTRELAAQIHSMVEKLAQFTDIRCCLIVGGLSTKIQEVAL 285
Query: 147 RAALAGPPDIVIATPG----CMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 202
R+ PDIV+ATPG + LS G+ + L +++LDEAD LL G+ ++
Sbjct: 286 RSM----PDIVVATPGRIIDHLRNSLSVGL-------EDLAVVILDEADRLLELGFSAEI 334
Query: 203 KALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL----TLPEVGDVKDEVIPKNVQ 258
+ L + P+ Q +L SAT + ++D+L KL L+ P L +L + +EV+ ++
Sbjct: 335 QELIRMCPKRRQTMLFSATMTEEIDELVKLSLNKPVRLEADPSLKRPATLTEEVV--RIR 392
Query: 259 QFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELP 318
+ S E +L L L+ ++ +IF+ T A RLK+ G+K+A L+ L
Sbjct: 393 RARESNQE-----AVLLALCLKTFKRSVIIFSGTKQSAHRLKIIFGLSGMKAAELHGNLT 447
Query: 319 QNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVR 378
Q RL LE F D+LIATD R
Sbjct: 448 QAQRLEALELFKKKEVDFLIATD---------------------------------VAAR 474
Query: 379 GIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD 438
GID V TVINF P++ Y+HR+GRT RA G +V+ V+ D+ + + I G
Sbjct: 475 GIDIVGVQTVINFACPRDVKTYLHRVGRTARAGREGYAVTFVTDDDRCLLKAIAKKAGSQ 534
Query: 439 ENEDSNIIAPFPL 451
S I+A P+
Sbjct: 535 LK--SRIVAEKPV 545
>gi|384493436|gb|EIE83927.1| hypothetical protein RO3G_08632 [Rhizopus delemar RA 99-880]
Length = 711
Score = 200 bits (509), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 137/425 (32%), Positives = 204/425 (48%), Gaps = 65/425 (15%)
Query: 15 AEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGS 74
A+E E + ++ SF + L ++ + G KPT IQ +IP+ L GKD+ A TGS
Sbjct: 205 ADESEVDKQDHISFTSMNLSRPILKGVTSLGFVKPTPIQSQTIPIALMGKDICGGAATGS 264
Query: 75 GKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIE-------LCK 127
GKT A+++P+L RL P+ + L+L PTREL QV+S + LC
Sbjct: 265 GKTAAFVIPILERLLYR--PRQTPSTRVLILCPTRELAAQVHSAAVKFAAYTDITFCLCV 322
Query: 128 GQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILV 186
G + LK + L PD+V+ATPG L V + F D+ +ILV
Sbjct: 323 GGLSLKTQE-----------QELKLKPDVVVATPG----RLIDHVRNTSGFHLDACEILV 367
Query: 187 LDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVG 246
+DEAD +L G+ D+L + P+ Q +L SAT + +VD+L ++ LHNP L +
Sbjct: 368 MDEADRMLEDGFADELGEIVKSCPKSRQTMLFSATMTDNVDQLIRMSLHNPVRLFV---- 423
Query: 247 DVKDEVIPKNVQQF--WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLE 304
D ++ + +Q+F E D+ +L L K + K +IF + A ++K+
Sbjct: 424 DRSNQAASRLIQEFVRIRQAREADRSAVLLALCKKSF-KNKVIIFFRSKAAAHQMKILFG 482
Query: 305 KFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKK 364
G+ +A L+ L Q RL LE+F DYL+ATD
Sbjct: 483 LMGLNAAELHGNLTQEQRLEALEQFRDNQVDYLLATD----------------------- 519
Query: 365 HPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE 424
RG+D K + TVIN+ MP A Y+HR+GRT RA G SV+LV +
Sbjct: 520 ----------LAARGLDIKGIETVINYNMPTQFAQYLHRVGRTARAGRNGRSVTLVGESD 569
Query: 425 MKIFE 429
K+ +
Sbjct: 570 RKMLK 574
>gi|242045284|ref|XP_002460513.1| hypothetical protein SORBIDRAFT_02g029690 [Sorghum bicolor]
gi|241923890|gb|EER97034.1| hypothetical protein SORBIDRAFT_02g029690 [Sorghum bicolor]
Length = 760
Score = 200 bits (509), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 149/433 (34%), Positives = 211/433 (48%), Gaps = 63/433 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF EL L LV A G QKPT IQ A IPL L G+D+ A TGSGKT A+ LP+L
Sbjct: 186 SFLELNLSRPLVRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLE 245
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
RL PK A L+L PTREL QV+S + L + + L V L++ + L
Sbjct: 246 RLLFR--PKRVPAIRVLILTPTRELAAQVHSMIEKLAQFTDIRCCLIVGGLSTKVQEVAL 303
Query: 147 RAALAGPPDIVIATPG----CMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 202
R+ PDIV+ATPG + LS G+ + L +++LDEAD LL G+ ++
Sbjct: 304 RSM----PDIVVATPGRIIDHLRNSLSVGL-------EDLAVVILDEADRLLELGFSAEI 352
Query: 203 KALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL----TLPEVGDVKDEVIPKNVQ 258
+ L + P+ Q +L SAT + ++D+L KL L+ P L +L + +EV+ ++
Sbjct: 353 QELIRMCPKRRQTMLFSATMTEEIDELIKLSLNKPVRLEADPSLKRPATLTEEVV--RIR 410
Query: 259 QFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELP 318
+ S E +L L L+ ++ +IF+ T A RLK+ G+K+A L+ L
Sbjct: 411 RARESNQE-----AVLLALCLKTFKRSVIIFSGTKQSAHRLKIVFGLSGMKAAELHGNLT 465
Query: 319 QNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVR 378
Q RL LE F D+LIATD R
Sbjct: 466 QAQRLEALELFKKQEVDFLIATD---------------------------------VAAR 492
Query: 379 GIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD 438
GID V TVINF P++ Y+HR+GRT RA G +V+ V+ D+ + + I G
Sbjct: 493 GIDIVGVRTVINFACPRDVKTYLHRVGRTARAGREGYAVTFVTDDDRSLLKAIAKKAGSQ 552
Query: 439 ENEDSNIIAPFPL 451
S I+A P+
Sbjct: 553 LK--SRIVAEKPV 563
>gi|414589947|tpg|DAA40518.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein,
partial [Zea mays]
Length = 786
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 149/433 (34%), Positives = 211/433 (48%), Gaps = 63/433 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF EL L LV A G QKPT IQ A IPL L G+D+ A TGSGKT A+ LP+L
Sbjct: 184 SFLELNLSRPLVRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLE 243
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
RL PK A L+L PTREL Q++S V L + + L V L++ + L
Sbjct: 244 RLLFR--PKRVPAIRVLILTPTRELAAQIHSMVEKLAQFTDIRCCLIVGGLSTKIQEVAL 301
Query: 147 RAALAGPPDIVIATPG----CMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 202
R+ PDIV+ATPG + LS G+ + L +++LDEAD LL G+ ++
Sbjct: 302 RSM----PDIVVATPGRIIDHLRNSLSVGL-------EDLAVVILDEADRLLELGFSAEI 350
Query: 203 KALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL----TLPEVGDVKDEVIPKNVQ 258
+ L + P+ Q +L SAT + ++D+L KL L+ P L +L + +EV+ ++
Sbjct: 351 QELIRMCPKRRQTMLFSATMTEEIDELVKLSLNKPVRLEADPSLKRPATLTEEVV--RIR 408
Query: 259 QFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELP 318
+ S E +L L L+ ++ +IF+ T A RLK+ G+K+A L+ L
Sbjct: 409 RARESNQE-----AVLLALCLKTFKRSVIIFSGTKQSAHRLKIIFGLSGMKAAELHGNLT 463
Query: 319 QNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVR 378
Q RL LE F D+LIATD R
Sbjct: 464 QAQRLEALELFKKKEVDFLIATD---------------------------------VAAR 490
Query: 379 GIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD 438
GID V TVINF P++ Y+HR+GRT RA G +V+ V+ D+ + + I G
Sbjct: 491 GIDIVGVQTVINFACPRDVKTYLHRVGRTARAGREGYAVTFVTDDDRCLLKAIAKKAGSQ 550
Query: 439 ENEDSNIIAPFPL 451
S I+A P+
Sbjct: 551 LK--SRIVAEKPV 561
>gi|239612877|gb|EEQ89864.1| 2-isopropylmalate synthase [Ajellomyces dermatitidis ER-3]
Length = 834
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 134/409 (32%), Positives = 201/409 (49%), Gaps = 53/409 (12%)
Query: 23 EEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLL 82
E KSF+ L ++ L G PT IQ+ +IP+ L GKDVV A TGSGKT A+++
Sbjct: 308 EPAKSFQAFSLSRPILRGLTSVGFTTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFII 367
Query: 83 PLLHRLFNESS--PKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSS 140
P+L RL P S++A +L+PTREL Q Y+ L + QL
Sbjct: 368 PILERLLYRPRKVPTSRVA----ILMPTRELAVQCYNVATKLATFT----DITFCQLVGG 419
Query: 141 MPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYE 199
+ L PD++IATPG + S SF+ D+L+ILVLDEAD +L G+
Sbjct: 420 FSLREQENILKKRPDVIIATPGRFIDHMRN----SASFTVDTLEILVLDEADRMLEDGFA 475
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
D+L + IP+ Q +L SAT +++VDKL ++ L+ P L + D K + + VQ+
Sbjct: 476 DELNEILTTIPKSRQTMLFSATMTNNVDKLIRVGLNRPVRLMV----DAKKQTVGTLVQE 531
Query: 260 F-WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELP 318
F + DK L L +L + + + +IF A R+++ G+K+A L+ +
Sbjct: 532 FVRLRPGREDKRLGYLMVLCKTIYKDRVIIFFRAKKEAHRVRIIFGLMGLKAAELHGSMS 591
Query: 319 QNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVR 378
Q R+ +E F G +L+ATD R
Sbjct: 592 QEQRIKSVESFRDGKVSFLLATDVAS---------------------------------R 618
Query: 379 GIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 427
G+D K V TVIN+E PQ+ Y+HR+GRT RA +G + +L + + K+
Sbjct: 619 GLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKV 667
>gi|143454043|sp|Q0INC5.2|RH28_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 28
gi|77555691|gb|ABA98487.1| DEAD/DEAH box helicase family protein, expressed [Oryza sativa
Japonica Group]
gi|125579336|gb|EAZ20482.1| hypothetical protein OsJ_36091 [Oryza sativa Japonica Group]
gi|215706455|dbj|BAG93311.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 802
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 150/433 (34%), Positives = 208/433 (48%), Gaps = 63/433 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF EL L L+ A G QKPT IQ A IPL L G+D+ A TGSGKT A+ LP+L
Sbjct: 195 SFLELNLSRPLLRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLE 254
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
RL PK A L+L PTREL QV+S + L + + L V L++ + L
Sbjct: 255 RLLFR--PKRVPAIRVLILTPTRELAAQVHSMIEKLAQFTDIRCCLIVGGLSTKVQEVAL 312
Query: 147 RAALAGPPDIVIATPG----CMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 202
R+ PDIV+ATPG + LS G+ + L IL+LDEAD LL G+ ++
Sbjct: 313 RSM----PDIVVATPGRIIDHLRNSLSVGL-------EDLAILILDEADRLLELGFSAEI 361
Query: 203 KALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL----TLPEVGDVKDEVIPKNVQ 258
+ L + PR Q +L SAT + ++++L L L+ P L +L + +EV+
Sbjct: 362 QELIRMCPRRRQTMLFSATMTEEINELVTLSLNKPVRLEADPSLKRPATLTEEVVR---- 417
Query: 259 QFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELP 318
I + +L L L+ + K +IF+ T A RLK+ G+K+A L+ L
Sbjct: 418 ---IRRAREANQEAVLLALCLKTFKDKVIIFSGTKHSAHRLKIIFGLSGMKAAELHGNLT 474
Query: 319 QNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVR 378
Q RL LE F D+LIATD R
Sbjct: 475 QAQRLEALELFKKQEVDFLIATDV---------------------------------AAR 501
Query: 379 GIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD 438
GID V TVINF P++A Y+HR+GRT RA G +V+ V+ D+ + + I G
Sbjct: 502 GIDIVGVRTVINFSCPRDARTYLHRVGRTARAGREGYAVTFVTDDDRSLLKAIAKKAGSQ 561
Query: 439 ENEDSNIIAPFPL 451
S I+A P+
Sbjct: 562 LK--SRIVAEKPV 572
>gi|392571512|gb|EIW64684.1| DEAD-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 772
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 161/520 (30%), Positives = 246/520 (47%), Gaps = 79/520 (15%)
Query: 10 KEVKQA--EEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVV 67
KE K A + E+ AE SF + L ++ ++ G PT IQ A+IP+ L GKDVV
Sbjct: 165 KERKAAYFDSEQGPAEAHTSFLSMNLSRPIIKSITTLGFTTPTPIQAATIPVALLGKDVV 224
Query: 68 ARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCK 127
A TGSGKT A+++P+L RL K A L+L PTREL Q Y L
Sbjct: 225 GNAVTGSGKTAAFIIPMLERLMYRDRGKKAAATRCLILAPTRELAVQCYEVGSKLAAHTD 284
Query: 128 GQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILV 186
+ L V L+ ++LR PD+VIATPG + L S +F+ D+L ILV
Sbjct: 285 IRFALVVGGLSVKAQETNLRTR----PDVVIATPGRLIDHLRN----SPTFTLDALDILV 336
Query: 187 LDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVG 246
LDEAD +L G+ D+L + P Q +L SAT + VD+L ++ L+ P L +
Sbjct: 337 LDEADRMLEDGFSDELTEIITSCPTSRQTMLFSATMTDSVDELVRMSLNKPVRLFV---- 392
Query: 247 DVKDEVIPKNVQQF-WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEK 305
D K +Q+F + + + +L L + +A+IF + +A ++++
Sbjct: 393 DPKRSTARGLLQEFVRVRAGKETERSALLVALCKRSFKARAIIFYRSKKLAHQMRIMFSL 452
Query: 306 FGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKH 365
G+K L+ +L Q RL L++F G DYL+ATD
Sbjct: 453 LGMKCDELHGDLTQEQRLKALQQFRDGHVDYLMATD------------------------ 488
Query: 366 PKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM 425
L S RG+D K + TVIN++MP + Y+HR+GRT RA G SV+LV +
Sbjct: 489 ----LAS-----RGLDIKGIETVINYDMPGTLSQYLHRVGRTARAGKKGRSVTLVGEADR 539
Query: 426 KIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYR---AEDVAKSVTKIAVRESRAQ 482
K+ +K+ + +ED +R+R E +AK K+A +
Sbjct: 540 KL---LKAAIKHSSSED----------------QVRHRQVPTEVLAKWAQKLAGLKEEI- 579
Query: 483 DLRNEILNSEKLKAHFEVNPKDL----DLLKHDKDLSKKP 518
+EIL EK + H +L ++++H+ ++ +P
Sbjct: 580 ---SEILQEEKEEKHIRQAEMELKKGQNMIEHEAEIFSRP 616
>gi|317025749|ref|XP_001389716.2| ATP-dependent RNA helicase drs1 [Aspergillus niger CBS 513.88]
Length = 827
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 155/506 (30%), Positives = 239/506 (47%), Gaps = 70/506 (13%)
Query: 18 EEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKT 77
E A A+ ++SF+E L ++ L PT IQ+ +IP+ L GKD+V A TGSGKT
Sbjct: 301 ESAMADAKRSFQEFNLSRPILRGLAGVNFSNPTPIQRKTIPVALLGKDIVGSAVTGSGKT 360
Query: 78 FAYLLPLLHRLF--NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVV 135
A+++P+L RL P S++A +L+PTREL Q Y+ L +
Sbjct: 361 AAFVVPILERLLFRPRKVPTSRVA----ILMPTRELAVQCYNVATKLATYT----DITFC 412
Query: 136 QLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLL 194
QL + L PD++IATPG + S SF+ D+L+ILVLDEAD +L
Sbjct: 413 QLVGGFSLREQENILKKRPDVIIATPGRFIDHMRN----SASFTVDTLEILVLDEADRML 468
Query: 195 SYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIP 254
G+ D+L + IP+ Q +L SAT + VDKL ++ L+ P L + D K
Sbjct: 469 EDGFADELNEILTTIPKSRQTMLFSATMTDTVDKLIRVGLNRPVRLMV----DAKKNTAV 524
Query: 255 KNVQQF-WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAIL 313
VQ+F + DK L L L E+ + ++F A R+++ G+K+A L
Sbjct: 525 TLVQEFVRLRPGREDKRLGYLLYLCKEIYTGRVIVFFRQKKEAHRVRIIFGLLGLKAAEL 584
Query: 314 NAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSE 373
+ + Q R+ +E F G +L+ATD L S
Sbjct: 585 HGSMSQEQRIKSVENFREGKAAFLLATD----------------------------LAS- 615
Query: 374 FGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS-PDEMKIFEEIK 432
RG+D K V TVIN+E PQ+ Y+HR+GRT RA +G + ++ + PD + +K
Sbjct: 616 ----RGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAAVK 671
Query: 433 SFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSE 492
+ S +I P +S +AE++A V ++ L E L +
Sbjct: 672 AGKSQGAKIASRVIEP------AVADSWAAKAEELADEVEEV---------LSEEKLEKQ 716
Query: 493 KLKAHFEVNPKDLDLLKHDKDLSKKP 518
+A +V K +L+KH+ ++ +P
Sbjct: 717 LAQAEMQVT-KGENLIKHEAEIKSRP 741
>gi|404398904|ref|ZP_10990488.1| DEAD/DEAH box helicase-like protein [Pseudomonas fuscovaginae
UPB0736]
Length = 621
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 140/428 (32%), Positives = 204/428 (47%), Gaps = 80/428 (18%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF LGL LV A+ G +PT +QQ +IP +L+G+D++ A+TG+GKT + LP+L
Sbjct: 2 SFASLGLSEALVGAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILE 61
Query: 87 RLFNESSP-----KSKLAPAALVLVPTRELCQQV------YSEVMALIELCKGQVQLKVV 135
RLF P P LVL PTREL QV Y+ + + C
Sbjct: 62 RLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSAC--------- 112
Query: 136 QLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLS 195
+ + + A+A D+++A PG + G + ++ILVLDEAD +L
Sbjct: 113 -IFGGVGMNPQVQAMARGVDVLVACPGRLLDLAGQGSVDLS----HVEILVLDEADRMLD 167
Query: 196 YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK 255
G+ D+K + A +P Q LL SAT S D+ L +LHNP + EV P
Sbjct: 168 MGFVHDVKKVLARLPAKRQNLLFSATFSKDITDLAGKLLHNPERI----------EVTPP 217
Query: 256 N-----VQQ--FWISCSERDKLL-YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFG 307
N ++Q F ++ S + LL +++T E V L+FT T A RL +L+K G
Sbjct: 218 NTTVERIEQRVFRLAASHKRALLAHLITTGAWEQV----LVFTRTKHGANRLAEYLDKHG 273
Query: 308 IKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPK 367
+ +A ++ QN+R L +F AG L+ATD
Sbjct: 274 LSAAAIHGNKSQNARTKALADFKAGEIRILVATDI------------------------- 308
Query: 368 AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 427
RG+D + V+NFE+P YVHRIGRTGRA +G ++SLV+PDE K+
Sbjct: 309 --------AARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360
Query: 428 FEEIKSFV 435
+ I+
Sbjct: 361 LKSIERMT 368
>gi|327352045|gb|EGE80902.1| 2-isopropylmalate synthase [Ajellomyces dermatitidis ATCC 18188]
Length = 834
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 134/409 (32%), Positives = 201/409 (49%), Gaps = 53/409 (12%)
Query: 23 EEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLL 82
E KSF+ L ++ L G PT IQ+ +IP+ L GKDVV A TGSGKT A+++
Sbjct: 308 EPAKSFQAFSLSRPILRGLTSVGFTTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFII 367
Query: 83 PLLHRLFNESS--PKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSS 140
P+L RL P S++A +L+PTREL Q Y+ L + QL
Sbjct: 368 PILERLLYRPRKVPTSRVA----ILMPTRELAVQCYNVATKLATFT----DITFCQLVGG 419
Query: 141 MPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYE 199
+ L PD++IATPG + S SF+ D+L+ILVLDEAD +L G+
Sbjct: 420 FSLREQENILKKRPDVIIATPGRFIDHMRN----SASFTVDTLEILVLDEADRMLEDGFA 475
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
D+L + IP+ Q +L SAT +++VDKL ++ L+ P L + D K + + VQ+
Sbjct: 476 DELNEILTTIPKSRQTMLFSATMTNNVDKLIRVGLNRPVRLMV----DAKKQTVGTLVQE 531
Query: 260 F-WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELP 318
F + DK L L +L + + + +IF A R+++ G+K+A L+ +
Sbjct: 532 FVRLRPGREDKRLGYLMVLCKTIYKDRVIIFFRAKKEAHRVRIIFGLMGLKAAELHGSMS 591
Query: 319 QNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVR 378
Q R+ +E F G +L+ATD R
Sbjct: 592 QEQRIKSVESFRDGKVSFLLATDVAS---------------------------------R 618
Query: 379 GIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 427
G+D K V TVIN+E PQ+ Y+HR+GRT RA +G + +L + + K+
Sbjct: 619 GLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKV 667
>gi|327272750|ref|XP_003221147.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
[Anolis carolinensis]
Length = 445
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 142/424 (33%), Positives = 218/424 (51%), Gaps = 53/424 (12%)
Query: 14 QAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTG 73
+ E+EE AE KSF+ELG+ L A ++ G + PT IQ SIPL L+G+D++ A+TG
Sbjct: 4 EMEQEEVNAEAAKSFKELGVTEVLCEACDQLGWKTPTKIQVESIPLALQGRDIIGLAETG 63
Query: 74 SGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLK 133
SGKT A+ LP+L L +P+ ALVL PTREL Q+ + AL VQ
Sbjct: 64 SGKTGAFALPILQALLE--TPQRFF---ALVLTPTRELAFQISEQFEALGSSIG--VQTA 116
Query: 134 VVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADL 192
V+ M A L ALA P ++IATPG + L +K F+ +LK LV+DEAD
Sbjct: 117 VIVGGIDMMAQSL--ALAKKPHVIIATPGRLIDHLEN----TKGFNLRALKYLVMDEADR 170
Query: 193 LLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEV 252
+L+ +E ++ + VIPR + L SAT + V KL++ L +P + K +
Sbjct: 171 ILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKDPVKCAVSS----KYQT 226
Query: 253 IPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAI 312
+ K +QQ+++ + K Y++ +L EL +IF +T + R L L G +
Sbjct: 227 VEK-LQQYYVFIPSKFKDSYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIP 284
Query: 313 LNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDS 372
L+ ++ QN RL L +F A L+ATD
Sbjct: 285 LHGQMNQNKRLGSLNKFKAKARSVLLATDVAS---------------------------- 316
Query: 373 EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432
RG+D +V VINF++P ++ Y+HR+GRT RA +G S++ V+ ++++F+ I+
Sbjct: 317 -----RGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRIE 371
Query: 433 SFVG 436
+G
Sbjct: 372 HLIG 375
>gi|170719671|ref|YP_001747359.1| DEAD/DEAH box helicase [Pseudomonas putida W619]
gi|169757674|gb|ACA70990.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida W619]
Length = 630
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 143/425 (33%), Positives = 207/425 (48%), Gaps = 80/425 (18%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF LGL LV A+ G +PT +QQ +IP +L+G+D++ A+TG+GKT + LP+L
Sbjct: 2 SFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILE 61
Query: 87 RLFNESSP-KSK----LAPAALVLVPTRELCQQ------VYSEVMALIELCKGQVQLKVV 135
RLF P KS+ P LVL PTREL Q VY+ + L+ C
Sbjct: 62 RLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSAC--------- 112
Query: 136 QLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLS 195
+ + + A+A D+++A PG + G + ++ILVLDEAD +L
Sbjct: 113 -IFGGVGMNPQIQAIAKGVDVLVACPGRLLDLAGQGRVDLA----HVEILVLDEADRMLD 167
Query: 196 YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK 255
G+ D+K + A +P Q LL SAT S D+ L +LHNP + EV P
Sbjct: 168 MGFIHDVKKVLARLPAKRQNLLFSATFSKDITDLADKLLHNPERI----------EVTPP 217
Query: 256 N-----VQQ--FWISCSERDKLL-YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFG 307
N ++Q + + S + LL +++TL E V L+FT T A RL +LEK G
Sbjct: 218 NTTVERIEQRVYRLPASHKRALLAHLITLGAWEQV----LVFTRTKHGANRLAEYLEKHG 273
Query: 308 IKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPK 367
+ +A ++ QN+R L +F A L+ATD
Sbjct: 274 LSAAAIHGNKSQNARTKALADFKANSVRVLVATDI------------------------- 308
Query: 368 AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 427
RG+D + V+NFE+P YVHRIGRTGRA +G ++SLV+PDE K+
Sbjct: 309 --------AARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360
Query: 428 FEEIK 432
+ I+
Sbjct: 361 LKSIE 365
>gi|87118170|ref|ZP_01074069.1| ATP-dependent RNA helicase, DEAD box family protein [Marinomonas
sp. MED121]
gi|86165804|gb|EAQ67070.1| ATP-dependent RNA helicase, DEAD box family protein [Marinomonas
sp. MED121]
Length = 459
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 136/410 (33%), Positives = 210/410 (51%), Gaps = 49/410 (11%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F + G D R++ +L G T IQ +IP + G+D++A +KTGSGKT AYL+P LHR
Sbjct: 17 FSDFGFDARILQSLRHWGFDSATQIQAQAIPEAMAGRDLLASSKTGSGKTLAYLIPALHR 76
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
++ + +K A L+LVPTREL +QVYS++ L+ K LK + +D
Sbjct: 77 VYRVKALSNKDAR-VLILVPTRELAKQVYSQLRLLVASSK----LKTALILGGENFNDQI 131
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL-S 206
L P ++ATPG + L+ Q F D L++L+LDEAD +L G+ D LK +
Sbjct: 132 KDLQKDPQFIVATPGRLVDHLN----QRNMFLDGLELLILDEADRMLDLGFADQLKQIDD 187
Query: 207 AVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
A R Q L SAT +++V+ + + +L+ P + + DV ++ Q+F++ C
Sbjct: 188 AASHRLRQTLFFSATLDNAEVNDIAQRLLNEPSRVAIGAGTDVHSDI----KQKFYL-CD 242
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
D ILT + + K+ +IFT T RL LE+ G + LN +L Q++R +
Sbjct: 243 HLDHKEAILTHVLEQETIKQGIIFTATKLDTVRLASLLEEKGFTTQALNGDLTQSARNKV 302
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
++ F G F L++TD RG+D NV
Sbjct: 303 MDSFARGHFQILVSTDLAS---------------------------------RGLDIANV 329
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
VINF++P+++ YVHR GRTGRA G + SLV P + F+ +++F+
Sbjct: 330 THVINFDIPKHSEEYVHRTGRTGRAGFQGDAFSLVGPKDWHNFKALETFL 379
>gi|407860297|gb|EKG07320.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
Length = 592
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 168/586 (28%), Positives = 292/586 (49%), Gaps = 54/586 (9%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
++ E+ LD R++ A+ + PT +Q A IPL L+G+D+ +++TGSGKT +++P+L
Sbjct: 12 AWPEMALDSRILEAIKRVKWNSPTPVQGACIPLALKGRDLAIQSRTGSGKTGTFVIPILQ 71
Query: 87 RLFNES----SPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMP 142
R+ E+ + ++ P AL+L+P+ ELC+Q V AL + + +V V LTS
Sbjct: 72 RVITETEKICNRRTAKNPVALILLPSVELCEQTVEVVTALAKYVRPRVM--VDNLTSRGV 129
Query: 143 ASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 202
+ R A A P I++ T + K +G + ++ + +L+ +V+DE D ++S E L
Sbjct: 130 VTKARVA-AAP--ILVTTAALLGKHCRSGTVTAEDLA-TLRCVVIDEVDFVISIA-EGSL 184
Query: 203 KALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL---------PEVGDVKDEVI 253
+A+ +V+P Q +L SAT + V +K +LHNP +TL P G+ + V+
Sbjct: 185 RAVQSVLPPSVQTILSSATLTDGVVHIKSQLLHNPVTITLSTDDENEMTPTEGE--NIVV 242
Query: 254 PKNVQQFWISCSERDKLLYIL------------TLLKLELVQKKALIFTNTIDMAFRLKL 301
+ + I+ ER + Y++ L +L ++ K LIF N + ++++
Sbjct: 243 ESRITKKGINSEERLRHYYLVATDECHHHTLLYALYRLGHIKGKTLIFVNEEEKTYKVQS 302
Query: 302 FLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDT--QTKEKDQSDEGGHVDS 359
FL + G+++ + ++ LP N R+ L F G L+ TD T +S G +
Sbjct: 303 FLAQLGVEALVYDSNLPLNVRVDTLHRFQVGSVGTLVCTDGTLESVDNLQESIPGAEAQA 362
Query: 360 RK--SKKHPKAKLDSEFGVVRGIDFKNVHTVINFE-----MPQNAAGYVHRIGRTGRAYN 412
+ SKK + + + + RGIDF +V V+ F+ + + Y HR+GR GRA
Sbjct: 363 TRMHSKKGKRTEDRHDGALQRGIDFSDVRNVVLFDGIAHPTTSDFSRYTHRVGRAGRAGK 422
Query: 413 TGASVSLVSPDE-MKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSV 471
G +++L + + ++ ++ +G + PF L + L+YR ++V S+
Sbjct: 423 GGMAITLFTVQQAQRVTRHLRRHLGATH----DTFEPFKQLRRQEAAKLQYRVDNVLFSI 478
Query: 472 TKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPA--SHLRDVPDY 529
T+ + R R + E+ S LK+H + KD +L+ SKK + L DVP Y
Sbjct: 479 TRSSTRRQRISSVAAELTRSAYLKSHM--SQKDEAVLQRILSRSKKTAKCDTTLLDVPHY 536
Query: 530 LLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSFSA 575
+ A K K RA +K+SS Q PR + R DPL ++
Sbjct: 537 MHIEGADSAEKYRKRVRARTSSKSSSASQQPRTRSR--DPLSRVAS 580
>gi|350638693|gb|EHA27049.1| hypothetical protein ASPNIDRAFT_130294 [Aspergillus niger ATCC
1015]
Length = 793
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 155/506 (30%), Positives = 239/506 (47%), Gaps = 70/506 (13%)
Query: 18 EEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKT 77
E A A+ ++SF+E L ++ L PT IQ+ +IP+ L GKD+V A TGSGKT
Sbjct: 274 ESAMADAKRSFQEFNLSRPILRGLAGVNFSNPTPIQRKTIPVALLGKDIVGSAVTGSGKT 333
Query: 78 FAYLLPLLHRLF--NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVV 135
A+++P+L RL P S++A +L+PTREL Q Y+ L +
Sbjct: 334 AAFVVPILERLLFRPRKVPTSRVA----ILMPTRELAVQCYNVATKLATYT----DITFC 385
Query: 136 QLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLL 194
QL + L PD++IATPG + S SF+ D+L+ILVLDEAD +L
Sbjct: 386 QLVGGFSLREQENILKKRPDVIIATPGRFIDHMRN----SASFTVDTLEILVLDEADRML 441
Query: 195 SYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIP 254
G+ D+L + IP+ Q +L SAT + VDKL ++ L+ P L + D K
Sbjct: 442 EDGFADELNEILTTIPKSRQTMLFSATMTDTVDKLIRVGLNRPVRLMV----DAKKNTAV 497
Query: 255 KNVQQF-WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAIL 313
VQ+F + DK L L L E+ + ++F A R+++ G+K+A L
Sbjct: 498 TLVQEFVRLRPGREDKRLGYLLYLCKEIYTGRVIVFFRQKKEAHRVRIIFGLLGLKAAEL 557
Query: 314 NAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSE 373
+ + Q R+ +E F G +L+ATD L S
Sbjct: 558 HGSMSQEQRIKSVENFREGKAAFLLATD----------------------------LAS- 588
Query: 374 FGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS-PDEMKIFEEIK 432
RG+D K V TVIN+E PQ+ Y+HR+GRT RA +G + ++ + PD + +K
Sbjct: 589 ----RGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAAVK 644
Query: 433 SFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSE 492
+ S +I P +S +AE++A V ++ L E L +
Sbjct: 645 AGKSQGAKIASRVIEP------AVADSWAAKAEELADEVEEV---------LSEEKLEKQ 689
Query: 493 KLKAHFEVNPKDLDLLKHDKDLSKKP 518
+A +V K +L+KH+ ++ +P
Sbjct: 690 LAQAEMQVT-KGENLIKHEAEIKSRP 714
>gi|197336796|ref|YP_002158115.1| ATP-dependent RNA helicase [Vibrio fischeri MJ11]
gi|197314048|gb|ACH63497.1| ATP-dependent RNA helicase [Vibrio fischeri MJ11]
Length = 460
Score = 199 bits (507), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 138/413 (33%), Positives = 212/413 (51%), Gaps = 49/413 (11%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F++LGLD RL+ L + I+KPT IQ+ ++P+ + GKDV+A +KTGSGKT A++LP+LH+
Sbjct: 18 FKDLGLDNRLLKNLAHQNIKKPTEIQRKAVPVAIAGKDVLASSKTGSGKTLAFVLPMLHK 77
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
S SK P A++L PTREL +QVYS + A++ G + +T +D
Sbjct: 78 SLKTKSF-SKNDPRAVILAPTRELAKQVYSHLRAML----GGLTYDATLITGGENFNDQV 132
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS- 206
AL P ++ATPG + L L + D L+ L+LDEAD +L G+ + L+ +
Sbjct: 133 NALRKHPKFIVATPGRLADHLEHQSL----YLDGLETLILDEADRMLDLGFAEHLQKIHK 188
Query: 207 AVIPRGCQCLLMSATSSSD-VDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
A R Q L+ SAT D V+K +L NP ++ VG DE K++ Q + C
Sbjct: 189 AASHRRRQTLMFSATLDHDAVNKFAGNMLDNPKRIS---VGLSNDE--HKDITQRFYLCD 243
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
D IL + + +IFT T RL L + +K+ L+ ++ Q +R +I
Sbjct: 244 HLDHKQAILNKIIETEDYFQIMIFTATRSDTDRLTKLLNEENLKAVALSGDMNQTARNNI 303
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
+ +F + L+ TD RG+D +V
Sbjct: 304 MSQFERRVHKILVTTDVAS---------------------------------RGLDLTSV 330
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD 438
VINF+MP++ YVHR+GRTGRA G ++SLV P + + F+ +++F+ D
Sbjct: 331 THVINFDMPKHMEEYVHRVGRTGRAGKKGTAISLVGPKDWESFKRVETFLQQD 383
>gi|357152629|ref|XP_003576183.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 28-like isoform 2
[Brachypodium distachyon]
Length = 770
Score = 199 bits (507), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 147/433 (33%), Positives = 204/433 (47%), Gaps = 63/433 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF EL + L+ A G QKPT IQ A IPL L G+D+ A TGSGKT A+ LP+L
Sbjct: 166 SFLELNISRPLLRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLE 225
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
RL PK A L+L PTREL QV+S + L + ++ + +P
Sbjct: 226 RLLFR--PKRVPAIRVLILTPTRELAAQVHSMIEKLAQF----TDIRCCLIVGGLPTKVQ 279
Query: 147 RAALAGPPDIVIATPG----CMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 202
AL PDIV+ATPG + LS G+ + L IL+LDEAD LL G+ ++
Sbjct: 280 EVALRSNPDIVVATPGRIIDHLRNSLSVGL-------EDLAILILDEADRLLELGFSVEI 332
Query: 203 KALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL----TLPEVGDVKDEVIPKNVQ 258
L + P+ Q +L SAT + ++D+L KL L+ P L +L + +EV+
Sbjct: 333 NELIRMCPKRRQTMLFSATMTEEIDELVKLSLNKPVRLEADPSLKRPATLTEEVV----- 387
Query: 259 QFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELP 318
I S +L L L+ +++ +IF+ T A RLK+ G+K+A L+ L
Sbjct: 388 --RIRRSREANQEAVLLALCLKTFKERVIIFSGTKHSAHRLKIMFGLSGMKAAELHGNLT 445
Query: 319 QNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVR 378
Q RL LE F D LIATD R
Sbjct: 446 QAQRLEALELFKKQEVDILIATDI---------------------------------AAR 472
Query: 379 GIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD 438
GID V TVINF P++ Y+HR+GRT RA G +V+ V+ D+ + + I G
Sbjct: 473 GIDIVGVRTVINFACPRDVKTYLHRVGRTARAGREGYAVTFVTDDDRSLLKAIAKKAGSQ 532
Query: 439 ENEDSNIIAPFPL 451
S I+A P+
Sbjct: 533 LK--SRIVAEKPV 543
>gi|115488568|ref|NP_001066771.1| Os12g0481100 [Oryza sativa Japonica Group]
gi|113649278|dbj|BAF29790.1| Os12g0481100, partial [Oryza sativa Japonica Group]
Length = 832
Score = 199 bits (507), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 150/433 (34%), Positives = 208/433 (48%), Gaps = 63/433 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF EL L L+ A G QKPT IQ A IPL L G+D+ A TGSGKT A+ LP+L
Sbjct: 225 SFLELNLSRPLLRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLE 284
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
RL PK A L+L PTREL QV+S + L + + L V L++ + L
Sbjct: 285 RLLFR--PKRVPAIRVLILTPTRELAAQVHSMIEKLAQFTDIRCCLIVGGLSTKVQEVAL 342
Query: 147 RAALAGPPDIVIATPG----CMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 202
R+ PDIV+ATPG + LS G+ + L IL+LDEAD LL G+ ++
Sbjct: 343 RSM----PDIVVATPGRIIDHLRNSLSVGL-------EDLAILILDEADRLLELGFSAEI 391
Query: 203 KALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL----TLPEVGDVKDEVIPKNVQ 258
+ L + PR Q +L SAT + ++++L L L+ P L +L + +EV+
Sbjct: 392 QELIRMCPRRRQTMLFSATMTEEINELVTLSLNKPVRLEADPSLKRPATLTEEVV----- 446
Query: 259 QFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELP 318
I + +L L L+ + K +IF+ T A RLK+ G+K+A L+ L
Sbjct: 447 --RIRRAREANQEAVLLALCLKTFKDKVIIFSGTKHSAHRLKIIFGLSGMKAAELHGNLT 504
Query: 319 QNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVR 378
Q RL LE F D+LIATD R
Sbjct: 505 QAQRLEALELFKKQEVDFLIATDV---------------------------------AAR 531
Query: 379 GIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD 438
GID V TVINF P++A Y+HR+GRT RA G +V+ V+ D+ + + I G
Sbjct: 532 GIDIVGVRTVINFSCPRDARTYLHRVGRTARAGREGYAVTFVTDDDRSLLKAIAKKAGSQ 591
Query: 439 ENEDSNIIAPFPL 451
S I+A P+
Sbjct: 592 LK--SRIVAEKPV 602
>gi|377555812|ref|ZP_09785540.1| ATP-dependent RNA helicase RhlE [endosymbiont of Bathymodiolus sp.]
Length = 430
Score = 199 bits (507), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 137/406 (33%), Positives = 210/406 (51%), Gaps = 48/406 (11%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
F +LGL ++ A+ KKG KP+ IQ+ +IP++L+GKD++A A+TG+GKT + LP+L
Sbjct: 2 GFSKLGLSDSILEAVTKKGYDKPSPIQEQAIPVVLDGKDIMAAAQTGTGKTAGFTLPIL- 60
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
++ ++ +P L+L PTREL QV + V I+ K Q+ LK + + +
Sbjct: 61 QILSKGTPAKSNQVRTLILTPTRELAAQVNASV---IDYGK-QLPLKSTVVFGGVKINPQ 116
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
L G DI++ATPG + S Q+ D L+ILV DEAD +L G+ D+K +
Sbjct: 117 MQKLRGGVDILVATPGRLLDLYS----QNAVKFDQLEILVFDEADRMLDMGFIHDIKRIL 172
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
++P+ Q L+ SAT S ++ KL K ++++P E+ K+V+Q WI +
Sbjct: 173 KILPKNRQTLMFSATFSEEIRKLAKTLVNDPI-----EISVTPRNTTVKSVKQ-WIHPVD 226
Query: 267 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
+ K +LT L E + L+F+ T A R+ L K GI +A ++ Q +R L
Sbjct: 227 KSKKQALLTHLIQEHSWYQVLVFSRTKHGANRIATQLGKKGITAAAIHGNKSQGARTRAL 286
Query: 327 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 386
+F AG + L+ATD RGID +
Sbjct: 287 ADFKAGKVNVLVATDIA---------------------------------ARGIDIVELP 313
Query: 387 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432
V+NF++P YVHRIGRTGRA + G ++SLVS DE K +I+
Sbjct: 314 HVVNFDLPNVPEDYVHRIGRTGRAGSKGEAISLVSADEAKQLFDIE 359
>gi|401407050|ref|XP_003882974.1| putative ATP-dependent nucleolar RNA helicase [Neospora caninum
Liverpool]
gi|325117390|emb|CBZ52942.1| putative ATP-dependent nucleolar RNA helicase [Neospora caninum
Liverpool]
Length = 919
Score = 199 bits (507), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 126/330 (38%), Positives = 190/330 (57%), Gaps = 27/330 (8%)
Query: 28 FEELGLDLRLVHA-LNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
F L LD RL A + + +Q PT +Q IPL L+GKD++A+A+TGSGKT AY LPLL
Sbjct: 195 FSSLYLDRRLARAAVQQMQLQHPTHVQAQVIPLALQGKDLLAQARTGSGKTLAYALPLLQ 254
Query: 87 RLFNESSPKSKLAP-----AALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSM 141
RL + P ALVLVP++ELC Q++ +AL++ C+ + + L SS
Sbjct: 255 RLLERREEEKATQPRPEGLEALVLVPSKELCLQIHDVFVALLKYCRDLITVNHTALASS- 313
Query: 142 PASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKS-----FSDSLKILVLDEADLLLSY 196
L L PP I+I TP + L G L S + +LK+LV DEADLLLS+
Sbjct: 314 --GSLLPFL--PPSILIGTPAGVVAYL--GKLDSSASIKSLLQRNLKVLVADEADLLLSF 367
Query: 197 GYEDDLKALSAVIP----RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEV 252
G+E ++ L A +P R Q LL+SAT + +V +L++++LH ++ E+ D +
Sbjct: 368 GFESEMARLLACLPATAERHYQALLVSATLNEEVAQLQQMLLHKAVMV---EIDDTLQQA 424
Query: 253 IPKNVQQFWISCSE-RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 311
+ +F++S + DK + + LKL+LV +K LIFT+ + A+ +++FLE+FGI
Sbjct: 425 -SSQLSEFYLSLPKPGDKWVVLYAFLKLDLVPRKCLIFTSGVSSAYAVRIFLERFGISCG 483
Query: 312 ILNAELPQNSRLHILEEFNAGLFDYLIATD 341
+L+ L SR +++ FN GL + LI TD
Sbjct: 484 VLSPTLSLESRQSLIQAFNKGLLEILITTD 513
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 85/243 (34%), Positives = 132/243 (54%), Gaps = 25/243 (10%)
Query: 348 KDQSDEGGHVDSRKS--KKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIG 405
KD S EGG ++ K+ P D EFG RG+D ++V V++F+MP++ Y+HRIG
Sbjct: 608 KDASSEGGEAPKKREAFKRMP----DDEFGSHRGLDLQSVACVLSFDMPRSVRSYIHRIG 663
Query: 406 RTGRAYNTGASVSLVSPD---EMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRY 462
R GR G SV LVS E+ + ++ + + S + P L Q+ VE RY
Sbjct: 664 RAGRGGAQGVSVCLVSQTAAREVLLLRKLVQLRREGNSGGSTALKPLSLRLQD-VECFRY 722
Query: 463 RAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLK------HDKDLSK 516
R EDV + VTK + A++L+ E+L S K+K F NP+D ++L+ D+ L+
Sbjct: 723 RVEDVCRGVTKRVIAALVAKELQQEVLRSRKMKDFFRRNPRDEEVLRAACKQLKDRALAG 782
Query: 517 KPPASHLRDVPDYLLDAKT----QEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKS 572
+ HL+ +P YLL A+T + A ++ A+A G + + ++G +R+ DPLKS
Sbjct: 783 R---GHLQHLPAYLL-AQTPPAQKTAVQLAVEAQAVQGTQATQEKRGLKRRT-LVDPLKS 837
Query: 573 FSA 575
F A
Sbjct: 838 FKA 840
>gi|426201453|gb|EKV51376.1| hypothetical protein AGABI2DRAFT_114110 [Agaricus bisporus var.
bisporus H97]
Length = 754
Score = 199 bits (507), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 146/422 (34%), Positives = 210/422 (49%), Gaps = 60/422 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF + L L+ A+ G KPT IQ ++IP+ L GKDVV A TGSGKT A+++P++
Sbjct: 195 SFLSMNLSRPLMKAVTNLGFNKPTPIQASTIPVALLGKDVVGNAVTGSGKTAAFMIPMIE 254
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYS-----EVMALIELCKGQVQLKVVQLTSSM 141
RL K A LVLVPTREL Q Y + I LC L V L+
Sbjct: 255 RLLFREKGKKAAAIRCLVLVPTRELAVQCYEVGTKLSIHTDIRLC-----LVVGGLSLKS 309
Query: 142 PASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYED 200
+DLR+ PDIVIATPG L + S SFS D+L ILV+DEAD +LS G+ D
Sbjct: 310 QEADLRSR----PDIVIATPG----RLIDHIRNSASFSLDALDILVIDEADRILSEGFSD 361
Query: 201 DLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF 260
+L + PR Q +L SAT + VD+L ++ L P L + D K +Q+F
Sbjct: 362 ELTEIIKSCPRSRQTMLFSATMTDSVDELVRVSLEKPVRLFV----DPKRTTARGLIQEF 417
Query: 261 --WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELP 318
+ E ++ ++TL + +++ ++F + +A ++++ G+K L+ +L
Sbjct: 418 VRVRAGKEAERSAMLVTLCR-RTFKRRVIVFLRSKKLAHQMRIVFSLLGMKCEELHGDLS 476
Query: 319 QNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVR 378
Q RL L+ F D+L+ATD L S R
Sbjct: 477 QEQRLRALQLFRDDAVDFLMATD----------------------------LAS-----R 503
Query: 379 GIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFE-EIKSFVGD 437
G+D K V TVIN++MP A Y+HR+GRT RA G +V+LV + K+ IK +
Sbjct: 504 GLDIKGVETVINYDMPTQLAQYLHRVGRTARAGRGGRAVTLVGEADRKMLRAAIKHAAAE 563
Query: 438 DE 439
D+
Sbjct: 564 DQ 565
>gi|357152627|ref|XP_003576182.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 28-like isoform 1
[Brachypodium distachyon]
Length = 780
Score = 199 bits (507), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 147/433 (33%), Positives = 204/433 (47%), Gaps = 63/433 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF EL + L+ A G QKPT IQ A IPL L G+D+ A TGSGKT A+ LP+L
Sbjct: 176 SFLELNISRPLLRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLE 235
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
RL PK A L+L PTREL QV+S + L + ++ + +P
Sbjct: 236 RLLFR--PKRVPAIRVLILTPTRELAAQVHSMIEKLAQF----TDIRCCLIVGGLPTKVQ 289
Query: 147 RAALAGPPDIVIATPG----CMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 202
AL PDIV+ATPG + LS G+ + L IL+LDEAD LL G+ ++
Sbjct: 290 EVALRSNPDIVVATPGRIIDHLRNSLSVGL-------EDLAILILDEADRLLELGFSVEI 342
Query: 203 KALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL----TLPEVGDVKDEVIPKNVQ 258
L + P+ Q +L SAT + ++D+L KL L+ P L +L + +EV+
Sbjct: 343 NELIRMCPKRRQTMLFSATMTEEIDELVKLSLNKPVRLEADPSLKRPATLTEEVV----- 397
Query: 259 QFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELP 318
I S +L L L+ +++ +IF+ T A RLK+ G+K+A L+ L
Sbjct: 398 --RIRRSREANQEAVLLALCLKTFKERVIIFSGTKHSAHRLKIMFGLSGMKAAELHGNLT 455
Query: 319 QNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVR 378
Q RL LE F D LIATD R
Sbjct: 456 QAQRLEALELFKKQEVDILIATDI---------------------------------AAR 482
Query: 379 GIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD 438
GID V TVINF P++ Y+HR+GRT RA G +V+ V+ D+ + + I G
Sbjct: 483 GIDIVGVRTVINFACPRDVKTYLHRVGRTARAGREGYAVTFVTDDDRSLLKAIAKKAGSQ 542
Query: 439 ENEDSNIIAPFPL 451
S I+A P+
Sbjct: 543 LK--SRIVAEKPV 553
>gi|398849062|ref|ZP_10605837.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM84]
gi|398245455|gb|EJN30975.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM84]
Length = 631
Score = 199 bits (507), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 148/427 (34%), Positives = 209/427 (48%), Gaps = 84/427 (19%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF LGL LV A+ G +PT +QQ +IP +L+G+D++ A+TG+GKT + LP+L
Sbjct: 2 SFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILE 61
Query: 87 RLFNESSP-KSK----LAPAALVLVPTRELCQQ------VYSEVMALIELCK-GQVQLKV 134
RLF P KS+ P LVL PTREL Q VY+ + L+ C G V +
Sbjct: 62 RLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACVFGGVGMNP 121
Query: 135 -VQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLL 193
VQ A+A D+++A PG + G K ++ILVLDEAD +
Sbjct: 122 QVQ------------AIAKGVDVLVACPGRLLDLAGQG----KVDLAHVEILVLDEADRM 165
Query: 194 LSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVI 253
L G+ D+K + A +P Q LL SAT S D+ L +LHNP + EV
Sbjct: 166 LDMGFIHDVKKVLARLPAKRQNLLFSATFSKDITDLADKLLHNPERI----------EVT 215
Query: 254 PKN-----VQQ--FWISCSERDKLL-YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEK 305
P N ++Q + + S + LL +++TL E V L+FT T A RL +LEK
Sbjct: 216 PPNTTVERIEQRVYRLPASHKRALLAHLITLGAWEQV----LVFTRTKHGANRLAEYLEK 271
Query: 306 FGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKH 365
G+ +A ++ QN+R L +F A L+ATD
Sbjct: 272 HGLSAAAIHGNKSQNARTKALADFKANAVRVLVATDI----------------------- 308
Query: 366 PKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM 425
RG+D + V+NFE+P YVHRIGRTGRA +G ++SLV+PDE
Sbjct: 309 ----------AARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEE 358
Query: 426 KIFEEIK 432
K+ + I+
Sbjct: 359 KLLKSIE 365
>gi|84468282|dbj|BAE71224.1| putative replication protein A1 [Trifolium pratense]
Length = 440
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 141/421 (33%), Positives = 207/421 (49%), Gaps = 55/421 (13%)
Query: 19 EAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTF 78
E E E KSF++LGL LV A + G + P IQ +IPL L+GKDV+ A+TGSGKT
Sbjct: 2 EEENNEMKSFKDLGLPEELVEACDNLGWKTPLKIQIEAIPLALQGKDVIGLAQTGSGKTG 61
Query: 79 AYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLT 138
A+ LP+LH L P A VL PTREL Q+ + AL + +K L
Sbjct: 62 AFALPILHALLQAPRPNHFF---ACVLSPTRELAIQISEQFEAL----GSGIGVKSAVLV 114
Query: 139 SSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS-LKILVLDEADLLLSYG 197
+ +A P I++ TPG + L +K FS S LK LVLDEAD LL+
Sbjct: 115 GGIDMVQQSIKIAKHPHIIVGTPGRVLDHLK----NTKGFSLSKLKYLVLDEADRLLNED 170
Query: 198 YEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNV 257
+E+ L + +IPR + L SAT + V+KL+++ L NP + K +
Sbjct: 171 FEESLNEILGMIPRERRTFLFSATMTKKVEKLQRVCLRNPVKIE----ASTKYSTVDTLK 226
Query: 258 QQFWISCSERDK--LLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNA 315
QQ+ ++R L+YILT E+ +++FT T D L L L G+K+ +N
Sbjct: 227 QQYRFLPAKRKDCYLVYILT----EMAGSTSMVFTRTCDATRLLALILRNLGLKAIPING 282
Query: 316 ELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFG 375
+ Q RL L +F +G + L+ TD
Sbjct: 283 HMSQPKRLGALNKFKSGDCNILLCTDVAS------------------------------- 311
Query: 376 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
RG+D V VIN+++P N+ Y+HR+GRT RA +G ++SLV+ E++ + +I+ +
Sbjct: 312 --RGLDIPAVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLI 369
Query: 436 G 436
G
Sbjct: 370 G 370
>gi|237747736|ref|ZP_04578216.1| ATP-dependent RNA helicase [Oxalobacter formigenes OXCC13]
gi|229379098|gb|EEO29189.1| ATP-dependent RNA helicase [Oxalobacter formigenes OXCC13]
Length = 469
Score = 199 bits (505), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 146/415 (35%), Positives = 215/415 (51%), Gaps = 58/415 (13%)
Query: 25 EKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPL 84
+K FE+ GL ++ AL+ G PT IQ +IPL+LEGKDV+ A+TG+GKT Y LP+
Sbjct: 14 DKKFEDFGLSPDILKALDDLGYVSPTPIQVQAIPLVLEGKDVMGAAQTGTGKTAGYSLPM 73
Query: 85 LHRLFNESSPKSKLAPA-----ALVLVPTRELCQQVYSEV--MALIELCKGQVQLKVVQL 137
L L S + ++PA AL+LVPTREL QV+ +V A K V V +
Sbjct: 74 LQSLL--FSANTSMSPARHPVRALILVPTRELADQVFEDVKRYAKYTPVKSAVVFGGVDI 131
Query: 138 TSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYG 197
+S S LRA + +I+IATPG L V Q +ILVLDEAD +L G
Sbjct: 132 SSQ--TSILRAGV----EILIATPG----RLLDHVQQKNVNLSHTQILVLDEADRMLDMG 181
Query: 198 YEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNV 257
+ DL+ + ++P+ Q LL SAT S+D+ KL + + +P + + + +NV
Sbjct: 182 FLPDLQRIVNLLPKQRQNLLFSATFSNDIKKLARSFMKDPVTVEV-----ARQNATAENV 236
Query: 258 QQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAEL 317
+Q E +K + LLK + Q++ LIF+NT A RL LE+ G+K++ ++ +
Sbjct: 237 KQTVYRIEESEKNAAVEHLLK-DRNQEQVLIFSNTKAGASRLARQLERKGMKASAIHGDK 295
Query: 318 PQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVV 377
Q R+ LE F +G D L+ATD
Sbjct: 296 TQAERMATLEAFKSGSIDILVATD---------------------------------VAA 322
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432
RG+ + + VINF++P A YVHRIGRTGRA + G ++SL S + ++ +EI+
Sbjct: 323 RGLHIEELPCVINFDLPFVAEDYVHRIGRTGRAGSKGEAISLYSEKDERLLKEIE 377
>gi|66812836|ref|XP_640597.1| hypothetical protein DDB_G0281711 [Dictyostelium discoideum AX4]
gi|74897154|sp|Q54TJ4.1|DDX27_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx27; AltName:
Full=DEAD box protein 27
gi|60468614|gb|EAL66617.1| hypothetical protein DDB_G0281711 [Dictyostelium discoideum AX4]
Length = 783
Score = 199 bits (505), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 151/465 (32%), Positives = 225/465 (48%), Gaps = 56/465 (12%)
Query: 23 EEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLL 82
EE +FEEL L L+ A+ K G +PT IQ +IPL L GKD++A A TGSGKT A+LL
Sbjct: 187 EELPTFEELHLSRPLLKAVQKLGFSQPTPIQAKAIPLALNGKDILASASTGSGKTAAFLL 246
Query: 83 PLLHR-LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSM 141
P+L R LF +S + A L+L+PTREL Q S + L + L V L++
Sbjct: 247 PVLERLLFRDSEYR---AIRVLILLPTRELALQCQSVMENLAQFSNITSCLIVGGLSNKA 303
Query: 142 PASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYED 200
+LR + PD+VIATPG + L L + D L+IL+LDEAD LL G++D
Sbjct: 304 QEVELRKS----PDVVIATPGRLIDHL----LNAHGIGLDDLEILILDEADRLLDMGFKD 355
Query: 201 DLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF 260
++ + P Q +L SAT + +V L KL L P + + + V + + V+
Sbjct: 356 EINKIVESCPTNRQTMLFSATLNDEVKTLAKLSLQQPIRVQVDALMQVTSTLEQEFVKIK 415
Query: 261 WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 320
S+R +L L+L Q +IF + RL++ +K+A L+ L Q
Sbjct: 416 PQHLSDRPAIL--LSLCTRVFNQGGTIIFCRSKKEVHRLRIIFGLSDLKAAELHGNLSQE 473
Query: 321 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 380
R L++F G +YL+A+D RG+
Sbjct: 474 QRFDSLQQFRDGQVNYLLASD---------------------------------VASRGL 500
Query: 381 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDEN 440
D V TVIN+ MP N A Y+HR+GRT RA G S S ++ ++ K+ ++I + +
Sbjct: 501 DIIGVKTVINYNMPNNMANYIHRVGRTARAGMDGKSCSFITDNDRKLLKDIVTKARNKAK 560
Query: 441 EDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLR 485
S ++Q+ V R R E++ + + I E + DLR
Sbjct: 561 SRS--------VSQDNVNFWRNRIEELTEDIKSIVREEMKEADLR 597
>gi|26991657|ref|NP_747082.1| DEAD/DEAH box helicase [Pseudomonas putida KT2440]
gi|24986754|gb|AAN70546.1|AE016697_1 ATP-dependent RNA helicase, DEAD box family [Pseudomonas putida
KT2440]
Length = 626
Score = 199 bits (505), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 144/425 (33%), Positives = 207/425 (48%), Gaps = 80/425 (18%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF LGL LV A+ G +PT +QQ +IP +L+G+D++ A+TG+GKT + LP+L
Sbjct: 2 SFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILE 61
Query: 87 RLFNESSP-KSK----LAPAALVLVPTRELCQQ------VYSEVMALIELCKGQVQLKVV 135
RLF P KS+ P LVL PTREL Q VY+ + L+ C
Sbjct: 62 RLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSAC--------- 112
Query: 136 QLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLS 195
+ + + A+A D+++A PG + G K ++ILVLDEAD +L
Sbjct: 113 -IFGGVGMNPQIQAIAKGVDVLVACPGRLLDLAGQG----KVDLAHVEILVLDEADRMLD 167
Query: 196 YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK 255
G+ D+K + A +P Q LL SAT S D+ L +LHNP + EV P
Sbjct: 168 MGFIHDVKKVLARLPAKRQNLLFSATFSKDITDLADKLLHNPERI----------EVTPP 217
Query: 256 N-----VQQ--FWISCSERDKLL-YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFG 307
N ++Q + + S + LL +++TL E V L+FT T A RL +LEK G
Sbjct: 218 NTTVERIEQRVYRLPASHKRALLAHLITLGAWEQV----LVFTRTKHGANRLAEYLEKQG 273
Query: 308 IKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPK 367
+ +A ++ QN+R L +F A L+ATD
Sbjct: 274 LTAAAIHGNKSQNARTKALADFKANSVRVLVATDI------------------------- 308
Query: 368 AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 427
RG+D + V+NFE+P YVHRIGRTGRA +G ++SLV+PDE K+
Sbjct: 309 --------AARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360
Query: 428 FEEIK 432
+ I+
Sbjct: 361 LKSIE 365
>gi|296808427|ref|XP_002844552.1| ATP-dependent RNA helicase drs1 [Arthroderma otae CBS 113480]
gi|238844035|gb|EEQ33697.1| ATP-dependent RNA helicase drs1 [Arthroderma otae CBS 113480]
Length = 807
Score = 199 bits (505), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 139/426 (32%), Positives = 211/426 (49%), Gaps = 54/426 (12%)
Query: 13 KQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKT 72
+QA E ++ + SF+ L L ++ L G PT IQ+ +IP+ L GKDVV A T
Sbjct: 280 EQAVESKSNSGAPASFQNLSLSRPILRGLASVGFSTPTPIQRKTIPVALLGKDVVGGAVT 339
Query: 73 GSGKTFAYLLPLLHRLFNESS--PKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQV 130
GSGKT A+++P+L RL P S++A +L+PTREL Q Y+ L
Sbjct: 340 GSGKTAAFIVPILERLLYRPRKVPTSRVA----ILMPTRELAVQCYNVATKLATFT---- 391
Query: 131 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDE 189
+ QL + L PD++IATPG + S SF+ D+L+IL+LDE
Sbjct: 392 DITFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRN----SASFTVDTLEILILDE 447
Query: 190 ADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVK 249
AD +L G+ ++L + IP+ Q +L SAT +S VDKL ++ L+ P L + D K
Sbjct: 448 ADRMLEDGFAEELNEILTTIPKSRQTMLFSATMTSSVDKLIRVGLNKPIRLMV----DSK 503
Query: 250 DEVIPKNVQQF-WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGI 308
+ + VQ+F + DK L L L + + ++F A R+++ G+
Sbjct: 504 KQTVGTLVQEFVRLRPGREDKRLAYLMFLCKTVYTSRVIVFFRQKKEAHRVRIVFGLMGL 563
Query: 309 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA 368
K+A L+ + Q R+ +E+F G YL+ATD
Sbjct: 564 KAAELHGSMSQEQRIKSVEDFRDGKVSYLLATD--------------------------- 596
Query: 369 KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS-PDEMKI 427
L S RG+D K V TVIN+E PQ+ Y+HR+GRT RA +G + ++ + PD +
Sbjct: 597 -LAS-----RGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVV 650
Query: 428 FEEIKS 433
E +K+
Sbjct: 651 KEAVKA 656
>gi|325273080|ref|ZP_08139385.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas sp.
TJI-51]
gi|324101781|gb|EGB99322.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas sp.
TJI-51]
Length = 630
Score = 199 bits (505), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 143/425 (33%), Positives = 207/425 (48%), Gaps = 80/425 (18%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF LGL LV A+ G +PT +QQ +IP +L+G+D++ A+TG+GKT + LP+L
Sbjct: 2 SFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILE 61
Query: 87 RLFNESSP-KSK----LAPAALVLVPTRELCQQ------VYSEVMALIELCKGQVQLKVV 135
RLF P KS+ P LVL PTREL Q VY+ + L+ C
Sbjct: 62 RLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSAC--------- 112
Query: 136 QLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLS 195
+ + + A+A D+++A PG + Q K ++ILVLDEAD +L
Sbjct: 113 -IFGGVGMNPQIQAIAKGVDVLVACPGRLLDLAG----QGKVDLAHVEILVLDEADRMLD 167
Query: 196 YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK 255
G+ D+K + A +P Q LL SAT S D+ L +LHNP + EV P
Sbjct: 168 MGFIHDVKKVLARLPAKRQNLLFSATFSKDITDLADKLLHNPERI----------EVTPP 217
Query: 256 N-----VQQ--FWISCSERDKLL-YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFG 307
N ++Q + + S + LL +++TL E V L+FT T A RL +LEK G
Sbjct: 218 NTTVERIEQRVYRLPASHKRALLAHLITLGAWEQV----LVFTRTKHGANRLAEYLEKHG 273
Query: 308 IKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPK 367
+ +A ++ QN+R L +F A L+ATD
Sbjct: 274 LTAAAIHGNKSQNARTKALADFKANSVRVLVATDI------------------------- 308
Query: 368 AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 427
RG+D + V+NFE+P YVHRIGRTGRA +G ++S+V+PDE K+
Sbjct: 309 --------AARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISMVAPDEEKL 360
Query: 428 FEEIK 432
+ I+
Sbjct: 361 LKSIE 365
>gi|259488879|tpe|CBF88686.1| TPA: ATP-dependent RNA helicase (Drs1), putative (AFU_orthologue;
AFUA_1G14990) [Aspergillus nidulans FGSC A4]
Length = 814
Score = 198 bits (504), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 153/511 (29%), Positives = 249/511 (48%), Gaps = 70/511 (13%)
Query: 13 KQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKT 72
++ +E+ A ++SF+E L ++ L PT IQQ +IP+ L GKD+V A T
Sbjct: 285 EKTDEDAATNSAKRSFQEFNLSRPILRGLAAVNFTNPTPIQQKTIPVALLGKDIVGSAVT 344
Query: 73 GSGKTFAYLLPLLHRLF--NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQV 130
GSGKT A+++P+L RL P S++A +L+PTREL Q Y+ L
Sbjct: 345 GSGKTAAFVVPILERLLFRPRKVPTSRVA----ILMPTRELAVQCYNVATKLATYT---- 396
Query: 131 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDE 189
+ QL + L PD++IATPG + S SF+ D+L+ILVLDE
Sbjct: 397 DITFCQLVGGFSLREQENVLKKRPDVIIATPGRFIDHMR----NSASFTVDTLEILVLDE 452
Query: 190 ADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVK 249
AD +L G+ D+L + IP+ Q +L SAT + VDKL ++ L+ P L + D K
Sbjct: 453 ADRMLEDGFADELNEILTTIPKSRQTMLFSATMTDSVDKLIRVGLNRPVRLMV----DTK 508
Query: 250 DEVIPKNVQQF-WISCSERDKLL-YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFG 307
VQ+F + DK L Y+L L K E+ + ++F A R+++ G
Sbjct: 509 KNTAVTLVQEFVRLRPGREDKRLGYLLHLCK-EVYTGRVIVFFRQKKEAHRVRIVFGLLG 567
Query: 308 IKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPK 367
+K+A L+ + Q R+ +E F G ++L+ATD
Sbjct: 568 LKAAELHGSMSQEQRIKSVESFRDGNVNFLLATD-------------------------- 601
Query: 368 AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 427
L S RG+D K V TVIN+E PQ+ YVHR+GRT RA +G + ++ + + K+
Sbjct: 602 --LAS-----RGLDIKGVETVINYEAPQSHEIYVHRVGRTARAGRSGRACTIAAEPDRKV 654
Query: 428 FEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNE 487
+K+ V + + + I++ ++ + + +A+D+ + + + L E
Sbjct: 655 ---VKAAVKAGKAQGAKIVS--RVVDPSVADDWASKAKDMEEEIDAV---------LEEE 700
Query: 488 ILNSEKLKAHFEVNPKDLDLLKHDKDLSKKP 518
L + +A +V K +L+KH+ ++ +P
Sbjct: 701 KLEKQLAQAEMQVT-KGENLIKHEAEIKSRP 730
>gi|449279156|gb|EMC86802.1| putative ATP-dependent RNA helicase DDX47, partial [Columba livia]
Length = 453
Score = 198 bits (504), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 137/429 (31%), Positives = 218/429 (50%), Gaps = 53/429 (12%)
Query: 9 SKEVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVA 68
+ E + A E EA EE +SF++LG+ L A ++ G + PT IQ +IP+ L+G+D++
Sbjct: 9 TAEPEAAVEPEAAGEESRSFKDLGVTDVLCEACDQLGWKVPTKIQVEAIPVALQGRDIIG 68
Query: 69 RAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKG 128
A+TGSGKT A+ LP+L L +P+ ALVL PTREL Q+ + AL
Sbjct: 69 LAETGSGKTGAFALPILQALLE--TPQRLF---ALVLTPTRELAFQISEQFEAL----GS 119
Query: 129 QVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVL 187
+ + + + A ALA P ++IATPG + L +K F+ +LK LV+
Sbjct: 120 SIGVHTTVIVGGIDAMSQSLALAKKPHVIIATPGRLVDHLEN----TKGFNLRALKYLVM 175
Query: 188 DEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGD 247
DEAD +L+ +E ++ + VIPR + L SAT + V KL++ L NP +
Sbjct: 176 DEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS--- 232
Query: 248 VKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFG 307
K + + K +QQ++I + K Y++ +L EL +IF +T + R L L G
Sbjct: 233 -KYQTVEK-LQQYYIFIPSKFKDSYLVHILN-ELAGNSFMIFCSTCNNTQRTALLLRNLG 289
Query: 308 IKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPK 367
+ L+ ++ QN RL L +F A L+ATD
Sbjct: 290 FTAIPLHGQMSQNKRLGALNKFKAKARSILLATDVAS----------------------- 326
Query: 368 AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 427
RG+D +V VINF++P ++ Y+HR+GRT RA +G S++ V+ ++++
Sbjct: 327 ----------RGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVEL 376
Query: 428 FEEIKSFVG 436
F+ I+ +G
Sbjct: 377 FQRIEHLIG 385
>gi|255941704|ref|XP_002561621.1| Pc16g13220 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211586244|emb|CAP93992.1| Pc16g13220 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 815
Score = 198 bits (504), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 149/495 (30%), Positives = 237/495 (47%), Gaps = 66/495 (13%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
+F+E L ++ L G PT IQ+ +IP+ L GKD+V A TGSGKT A+++P+L
Sbjct: 305 TFQEFNLSRPILRGLAAVGFTDPTPIQRKAIPVALLGKDIVGSAVTGSGKTAAFIVPILE 364
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
RL P+ ++L+PTREL Q Y+ + L + QL +
Sbjct: 365 RLL--FRPRKVPTSRVVILMPTRELAVQCYNVSVKLATFT----DVTFCQLVGGFSLREQ 418
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKAL 205
L PD++IATPG + S SF+ D+L+ILVLDEAD +L G+ D+L +
Sbjct: 419 ENVLKKRPDVIIATPGRFIDHMRN----SPSFTVDTLEILVLDEADRMLEDGFADELNEI 474
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF--WIS 263
IP+ Q +L SAT + +DKL ++ ++ P L + D K + VQ+F
Sbjct: 475 LTTIPKSRQTMLFSATMTDSIDKLIRVGMNRPVRLMV----DSKKNTVSTLVQEFVRLRP 530
Query: 264 CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
E +L Y+L L K E+ K+ +IF A R+++ G+K+A L+ L Q R+
Sbjct: 531 GREDKRLGYLLHLCK-EIYSKRVIIFFRQKKEAHRVRIIFSLLGLKAAELHGSLSQEQRI 589
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
+E F G +L+ATD RG+D K
Sbjct: 590 KSVENFRDGKVAFLLATDVAS---------------------------------RGLDIK 616
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDS 443
V TVIN+E PQ+ Y+HR+GRT RA +G + ++ + + KI +K V + + +
Sbjct: 617 GVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKI---VKLAVRAGKAQGA 673
Query: 444 NIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPK 503
I + ++ Q +S +AE++A V +I L+ E + +A + K
Sbjct: 674 KIAS--RVIEQAVADSWAQKAEEMADEVAEI---------LQEEKTEKQLSQAEMQFT-K 721
Query: 504 DLDLLKHDKDLSKKP 518
+L+KH ++ +P
Sbjct: 722 GENLMKHGAEIMSRP 736
>gi|393218427|gb|EJD03915.1| DEAD-domain-containing protein [Fomitiporia mediterranea MF3/22]
Length = 782
Score = 198 bits (504), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 145/437 (33%), Positives = 216/437 (49%), Gaps = 72/437 (16%)
Query: 17 EEEAEAEEEK-------------------SFEELGLDLRLVHALNKKGIQKPTLIQQASI 57
EEE +AE+E+ SF + L L+ AL G PT IQ A+I
Sbjct: 157 EEETQAEKERKAAYFASPDDPSVSGQVHTSFTTMSLSRPLLKALTALGFSTPTPIQVATI 216
Query: 58 PLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTREL---CQQ 114
P+ L GKDVV A TGSGKT A+++P+L RL K+K A +VLVPTREL C
Sbjct: 217 PVALLGKDVVGNAVTGSGKTAAFMIPVLERLMYRERGKNKAAVRCVVLVPTRELGVQCVD 276
Query: 115 VYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQ 174
V ++ A +++ ++ L V L+ ++LR PDIVIATPG + L
Sbjct: 277 VAKKLSAFMDV---RISLIVGGLSLKSQEAELRTR----PDIVIATPGRLIDHLR----N 325
Query: 175 SKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLI 233
S SF ++L +L+LDEAD +LS G+ D+LK + P Q +L SAT + DVD L ++
Sbjct: 326 SPSFGLETLDVLILDEADRMLSDGFADELKEIIQACPTSRQTMLFSATMTDDVDALVRMS 385
Query: 234 LHNPYILTLPEVGDVKDEVIPKNVQQF-WISCSERDKLLYILTLLKLELVQKKALIFTNT 292
L+ P L + D K +Q+F + + + +L L ++ ++F +
Sbjct: 386 LNRPVKLFV----DPKRSTARGLIQEFVRVRAGKEAERAALLVALCKRTFKQGVIVFFRS 441
Query: 293 IDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSD 352
+A ++++ G+K+ L+ +L Q RL L+ F G D+L+ATD
Sbjct: 442 KKLAHQMRVVFGILGMKAEELHGDLTQEQRLRALQLFRDGAVDFLMATD----------- 490
Query: 353 EGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYN 412
L S RG+D K + V+N++MP A Y+HR+GRT RA
Sbjct: 491 -----------------LAS-----RGLDIKGIEAVVNYDMPGQLAQYLHRVGRTARAGK 528
Query: 413 TGASVSLVSPDEMKIFE 429
G SV+LV + KI +
Sbjct: 529 KGRSVTLVGEADRKILK 545
>gi|389751392|gb|EIM92465.1| DEAD-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 812
Score = 198 bits (504), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 158/458 (34%), Positives = 218/458 (47%), Gaps = 73/458 (15%)
Query: 2 GKSKEIPSKEVKQAEEEEAEA---------EEEKSFEELGLDLRLVHALNKKGIQKPTLI 52
G S E S+ QAE++ A + SF + L ++ AL G PT I
Sbjct: 181 GPSSEDESEPETQAEKDRKTAFFASDAPSSDTHSSFLTMNLSRPVLKALTTLGFNTPTPI 240
Query: 53 QQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELC 112
Q A+IP+ L GKDVV A TGSGKT A+++P++ RL K A L+LVPTREL
Sbjct: 241 QAATIPVGLLGKDVVGNAVTGSGKTAAFIIPMIERLLYRDKGKKAAATRCLILVPTRELA 300
Query: 113 QQVYSEVMAL-----IELC--KGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMP 165
Q Y L I+ C G + LK ++ AL PD+VIATPG +
Sbjct: 301 VQCYEVGKKLGTHTDIQFCLIVGGLSLKSQEV-----------ALRARPDVVIATPGRLI 349
Query: 166 KCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSS 224
L S SF+ D+L ILVLDEAD +LS G+ D+L + P Q +L SAT +
Sbjct: 350 DHLRN----SPSFTLDALDILVLDEADRMLSDGFADELTEIIQSCPTSRQTMLFSATMTD 405
Query: 225 DVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF--WISCSERDKLLYILTLLKLELV 282
VD+L K+ L+ P L + D K VQ+F + E D+ ++ L K
Sbjct: 406 SVDELVKMSLNKPVRLFV----DPKRSTARGLVQEFVRVRAGKESDRSALLVALCK-RTF 460
Query: 283 QKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 342
+ LIF + +A ++++ G+ L+ +L Q RL L+ F G DYL+ATD
Sbjct: 461 KSGVLIFFRSKKLAHQVRIMFSLLGMSCEELHGDLSQEQRLKSLQLFRDGAVDYLMATD- 519
Query: 343 TQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVH 402
L S RG+D K + TVINF+MP A Y+H
Sbjct: 520 ---------------------------LAS-----RGLDIKGIDTVINFDMPGQLAQYLH 547
Query: 403 RIGRTGRAYNTGASVSLVSPDEMKIFE-EIKSFVGDDE 439
R+GRT RA G SV+LV + K+ + IK G D+
Sbjct: 548 RVGRTARAGKKGRSVTLVGEADRKMLKAAIKHSAGADQ 585
>gi|330817865|ref|YP_004361570.1| ATP-dependent RNA helicase [Burkholderia gladioli BSR3]
gi|327370258|gb|AEA61614.1| Putative ATP-dependent RNA helicase 2 [Burkholderia gladioli BSR3]
Length = 485
Score = 198 bits (504), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 135/426 (31%), Positives = 216/426 (50%), Gaps = 54/426 (12%)
Query: 18 EEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKT 77
+ A + +F++ GL ++ A+ ++G PT IQ +IP++L G+DV+ A+TG+GKT
Sbjct: 3 DSAATSVDATFDQFGLAPDILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKT 62
Query: 78 FAYLLPLLHRLF---NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIE--LCKGQVQL 132
++ LP++ RL N S+ ++ AL+L PTREL QV + V A + + V
Sbjct: 63 ASFSLPIIQRLLPQANSSASPARHPVRALILTPTRELADQVAANVHAYAKHTALRSAVVF 122
Query: 133 KVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADL 192
V + S M ++LR + +I+IATPG L V Q + +++LVLDEAD
Sbjct: 123 GGVDMNSQM--AELRRGV----EILIATPG----RLLDHVQQKTANLGQVQMLVLDEADR 172
Query: 193 LLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEV 252
+L G+ DL+ + ++P+ Q LL SAT S ++ KL L NP + + +
Sbjct: 173 MLDMGFLPDLQRILNLLPKQRQTLLFSATFSPEIKKLASTYLSNPQTIEV-----ARSNA 227
Query: 253 IPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAI 312
NV Q +E DK ++ L++ + K+ ++F N+ A RL LE+ G+ +
Sbjct: 228 TATNVTQVVYEIAEGDKQAAVVKLIR-DRSLKQVIVFCNSKIGASRLARQLERDGVVATA 286
Query: 313 LNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDS 372
++ + QN R+ L+ F G + L+ATD
Sbjct: 287 IHGDRSQNERMQALDAFKRGEVEALVATDV------------------------------ 316
Query: 373 EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432
RG+D + VINF++P NA YVHRIGRTGRA +G ++SL SP+E K +I+
Sbjct: 317 ---AARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLADIE 373
Query: 433 SFVGDD 438
+ D
Sbjct: 374 KLIKRD 379
>gi|348667582|gb|EGZ07407.1| hypothetical protein PHYSODRAFT_527947 [Phytophthora sojae]
Length = 773
Score = 198 bits (504), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 153/498 (30%), Positives = 229/498 (45%), Gaps = 73/498 (14%)
Query: 26 KSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLL 85
++F +L L ++ A++ G +KPT IQQ +IP+ L GKD+ A A+TGSGKT A+LLP+L
Sbjct: 149 ETFADLKLSRPIMRAISHIGFEKPTPIQQRAIPIALTGKDICASAQTGSGKTAAFLLPIL 208
Query: 86 HRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASD 145
RL S + + +++ P REL Q S L L V +P
Sbjct: 209 ERLQFRS--RRVQSTRTMIICPVRELATQCQSMFEQLARFTDITCSLAV----GGLPLKA 262
Query: 146 LRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKA 204
A L PD+V+ TPG M L SKS D L+ILVLDEAD LL G+ +++
Sbjct: 263 QEAELRNRPDVVVCTPGRMIDHLRN----SKSVHMDDLEILVLDEADRLLELGFTEEVLE 318
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264
L + P Q +L SAT +S VD+L L + P ++ + D+ ++ + V+ I
Sbjct: 319 LVRMCPVQRQTMLFSATMTSKVDQLIDLSMKRPVRISTDPLFDMAKHLVQEFVR---IRP 375
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
+ D IL L + ++F T A R+ + GIK+A L+ L Q RL
Sbjct: 376 NREDDREAILLALCTRTFRTNTIVFMETKSHAHRMMIIFGLAGIKAAELHGNLMQRERLE 435
Query: 325 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 384
L++F G D L+ TD RGID +
Sbjct: 436 ALQKFRDGTVDILLCTD---------------------------------IAARGIDVRG 462
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI----KSFVGDDEN 440
VH VIN+EMP++ YVHR+GRT RA G +V+L S + +++ K FV
Sbjct: 463 VHAVINYEMPKDITTYVHRVGRTARAGRNGRAVTLTSESRRLVMKQVSRHCKGFV----- 517
Query: 441 EDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEV 500
+ P P++AQ + R E + V + + E L +A E
Sbjct: 518 --KSRAVPDPVIAQ-----WKARIESMQGDVKLV---------MHEETLEKRMREAEKEA 561
Query: 501 NPKDLDLLKHDKDLSKKP 518
+ +LLKH +++ +P
Sbjct: 562 T-RATNLLKHRDEINSRP 578
>gi|421523635|ref|ZP_15970264.1| DEAD/DEAH box helicase [Pseudomonas putida LS46]
gi|402752621|gb|EJX13126.1| DEAD/DEAH box helicase [Pseudomonas putida LS46]
Length = 630
Score = 198 bits (503), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 144/425 (33%), Positives = 207/425 (48%), Gaps = 80/425 (18%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF LGL LV A+ G +PT +QQ +IP +L+G+D++ A+TG+GKT + LP+L
Sbjct: 2 SFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILE 61
Query: 87 RLFNESSP-KSK----LAPAALVLVPTRELCQQ------VYSEVMALIELCKGQVQLKVV 135
RLF P KS+ P LVL PTREL Q VY+ + L+ C
Sbjct: 62 RLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSAC--------- 112
Query: 136 QLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLS 195
+ + + A+A D+++A PG + Q K ++ILVLDEAD +L
Sbjct: 113 -IFGGVGMNPQIQAIAKGVDVLVACPGRLLDLAG----QGKVDLAHVEILVLDEADRMLD 167
Query: 196 YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK 255
G+ D+K + A +P Q LL SAT S D+ L +LHNP + EV P
Sbjct: 168 MGFIHDVKKVLARLPAKRQNLLFSATFSKDITDLADKLLHNPERI----------EVTPP 217
Query: 256 N-----VQQ--FWISCSERDKLL-YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFG 307
N ++Q + + S + LL +++TL E V L+FT T A RL +LEK G
Sbjct: 218 NTTVERIEQRVYRLPASHKRALLAHLITLGAWEQV----LVFTRTKHGANRLAEYLEKQG 273
Query: 308 IKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPK 367
+ +A ++ QN+R L +F A L+ATD
Sbjct: 274 LTAAAIHGNKSQNARTKALADFKANSVRVLVATDI------------------------- 308
Query: 368 AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 427
RG+D + V+NFE+P YVHRIGRTGRA +G ++SLV+PDE K+
Sbjct: 309 --------AARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360
Query: 428 FEEIK 432
+ I+
Sbjct: 361 LKSIE 365
>gi|321257748|ref|XP_003193695.1| ATP-dependent RNA helicase [Cryptococcus gattii WM276]
gi|317460165|gb|ADV21908.1| ATP-dependent RNA helicase, putative [Cryptococcus gattii WM276]
Length = 790
Score = 198 bits (503), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 140/403 (34%), Positives = 200/403 (49%), Gaps = 45/403 (11%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF + L L+ AL PT IQ +IPL L G+D++ A TGSGKT A+++P+L
Sbjct: 205 SFTAMNLSRPLLRALTSLQFTAPTPIQARAIPLALLGRDILGSAVTGSGKTAAFMVPILE 264
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
RL K A LVL PTREL Q + AL E KG + ++ L + +
Sbjct: 265 RLCYRDRGKGGAACRVLVLCPTRELAVQCEAVGKALAE--KGGLDVRFALLVGGLSLNAQ 322
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKAL 205
L PDI+IATPG + L+ + SF+ +L +LV+DEAD +L G+ D+L+ +
Sbjct: 323 AHTLRTLPDILIATPGRLIDHLT----NTPSFTLSALDVLVIDEADRMLEAGFTDELEEI 378
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
PR Q +L SAT + VD+L KL L P + + D K Q+F S
Sbjct: 379 IKACPRSRQTMLFSATMTDSVDELVKLSLDKPIRVFV----DPKRNTAKGLTQEFVRIRS 434
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
+ + +L L K +++K +IF + +A ++++ FG+K+A L+ L Q RL
Sbjct: 435 DDSRSPSLLALCK-RTIREKCIIFFRSKALAHQMRIVFGLFGLKAAELHGNLTQEQRLQA 493
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
L +F A DYL+ATD L S RG+D K V
Sbjct: 494 LNDFKASTVDYLLATD----------------------------LAS-----RGLDIKGV 520
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF 428
TVIN++MP A Y HR+GRT RA G S+SLV + K+
Sbjct: 521 ETVINYDMPGQLAQYTHRVGRTARAGRKGRSISLVGEADRKML 563
>gi|224096618|ref|XP_002310673.1| predicted protein [Populus trichocarpa]
gi|222853576|gb|EEE91123.1| predicted protein [Populus trichocarpa]
Length = 462
Score = 198 bits (503), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 147/420 (35%), Positives = 212/420 (50%), Gaps = 49/420 (11%)
Query: 18 EEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKT 77
++ E EE KSF++LG+ +LV A + G + PT IQ ++P LEGKD++ A+TGSGKT
Sbjct: 18 DQLEKEEVKSFKDLGICDQLVEACDSLGWKNPTKIQVEAVPHALEGKDLIGLAQTGSGKT 77
Query: 78 FAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQL 137
A+ LP+L L ESS KS A VL PTREL Q+ + AL + L+ L
Sbjct: 78 GAFALPILQALL-ESSQKSVQPFFACVLSPTRELAIQIAEQFEAL----GSGIGLRCGVL 132
Query: 138 TSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSY 196
+ LA P IV+ATPG + LS +K FS +LK LVLDEAD LL+
Sbjct: 133 VGGVDIVQQTLILAKRPHIVVATPGRLLDHLS----NTKGFSLRTLKYLVLDEADRLLNE 188
Query: 197 GYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN 256
+E L + VIPR + L SAT + V KL++ L NP + D + K
Sbjct: 189 EFEKSLDEILNVIPRDRKTYLFSATMTKKVKKLQRACLRNPVKIEAASKYSTVDTL--KQ 246
Query: 257 VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAE 316
+F S + L+YILT E+ A++FT T D L L L G+++ +N
Sbjct: 247 QYRFVPSKHKDCYLVYILT----EMSNSTAMVFTRTCDATSFLALVLRNLGLRAIPINGH 302
Query: 317 LPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGV 376
+ Q RL L +F A + LI TD
Sbjct: 303 MSQPKRLGALNKFKARECNVLICTDVAS-------------------------------- 330
Query: 377 VRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
RG+D +V VIN+++P N+ Y+HR+GRT RA +G ++SLV+ E++ + +I++ +G
Sbjct: 331 -RGLDIPSVDMVINYDVPSNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYLQIENLIG 389
>gi|357500169|ref|XP_003620373.1| ATP-dependent RNA helicase [Medicago truncatula]
gi|355495388|gb|AES76591.1| ATP-dependent RNA helicase [Medicago truncatula]
Length = 502
Score = 198 bits (503), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 138/419 (32%), Positives = 206/419 (49%), Gaps = 51/419 (12%)
Query: 19 EAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTF 78
E E +E KSF++LGL LV A K G + P IQ +IP LEGKD++ A+TGSGKT
Sbjct: 66 EEENKEMKSFKDLGLPESLVEACEKMGWKNPLKIQIEAIPPALEGKDLIGLAETGSGKTG 125
Query: 79 AYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLT 138
A+ LP+LH L P A V+ PTREL Q+ + AL ++ +K L
Sbjct: 126 AFALPILHALLEAPRPNHFF---ACVMSPTRELAIQISEQFEAL----GSEIGVKCAVLV 178
Query: 139 SSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYG 197
+ +A P I++ TPG + L +K FS LK LVLDEAD LL+
Sbjct: 179 GGIDMVQQSVKIAKLPHIIVGTPGRVLDHLKN----TKGFSLARLKYLVLDEADRLLNED 234
Query: 198 YEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNV 257
+E+ L + +IPR + L SAT + V+KL+++ L NP + D + K
Sbjct: 235 FEESLNEILGMIPRERRTFLFSATMTKKVEKLQRVCLRNPVKIETSSKYSTVDTL--KQQ 292
Query: 258 QQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAEL 317
+F + + L+YILT E+ +++FT T D L L L G+K+ +N +
Sbjct: 293 YRFLPAKHKDCYLVYILT----EMAGSTSMVFTRTCDSTRLLALILRNLGLKAIPINGHM 348
Query: 318 PQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVV 377
Q RL L +F +G + L+ TD
Sbjct: 349 SQPKRLGALNKFKSGDCNILLCTDVAS--------------------------------- 375
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
RG+D V VIN+++P N+ Y+HR+GRT RA +G ++SLV+ E++ + +I+ +G
Sbjct: 376 RGLDIPAVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYVQIEKLIG 434
>gi|301110278|ref|XP_002904219.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262096345|gb|EEY54397.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 758
Score = 198 bits (503), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 153/499 (30%), Positives = 231/499 (46%), Gaps = 75/499 (15%)
Query: 26 KSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLL 85
++F +L L ++ A++ G +KPT IQQ +IP+ L GKD+ A A+TGSGKT A+LLP+L
Sbjct: 131 ETFADLKLSRPIMRAISHIGFEKPTPIQQRAIPIALTGKDICASAQTGSGKTAAFLLPIL 190
Query: 86 HRL-FNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
RL F +S +++ P REL Q S + L L V +P
Sbjct: 191 ERLQFRSRRVQS---TRVMIICPVRELATQCQSMLEQLARFTDITCSLAV----GGLPLK 243
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLK 203
A L PD+V+ TPG M L SKS D L+ILVLDEAD LL G+ +++
Sbjct: 244 AQEAELRNRPDVVVCTPGRMIDHLRN----SKSVHMDDLEILVLDEADRLLELGFTEEVL 299
Query: 204 ALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWIS 263
L + P Q +L SAT +S VD+L L + P ++ + D+ ++ + V+ I
Sbjct: 300 ELVRMCPVQRQTMLFSATMTSKVDQLIDLSMKRPVRISTDPLFDMAKHLVQEFVR---IR 356
Query: 264 CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+ D IL L + ++F T A R+ + GIK+A L+ L Q RL
Sbjct: 357 PNREDDREAILLALCTRTFRSNTIVFMETKSHAHRMMIIFGLAGIKAAELHGNLQQRERL 416
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
L++F G D L+ TD RGID +
Sbjct: 417 EALQKFRDGTVDVLLCTD---------------------------------IAARGIDVR 443
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI----KSFVGDDE 439
VH VIN+EMP++ YVHR+GRT RA G +V+L S + +++ + FV
Sbjct: 444 GVHAVINYEMPKDITTYVHRVGRTARAGRNGRAVTLTSESRRLVMKQVSRHCQGFV---- 499
Query: 440 NEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFE 499
+ P P++AQ + R E + + V + + E L +A E
Sbjct: 500 ---KSRAVPDPVIAQ-----WKARIESMLEDVKLV---------MHEETLEKRMREAEKE 542
Query: 500 VNPKDLDLLKHDKDLSKKP 518
+ +LLKH +++ +P
Sbjct: 543 AT-RATNLLKHRDEINARP 560
>gi|120556730|ref|YP_961081.1| DEAD/DEAH box helicase [Marinobacter aquaeolei VT8]
gi|120326579|gb|ABM20894.1| DEAD/DEAH box helicase domain protein [Marinobacter aquaeolei VT8]
Length = 443
Score = 198 bits (503), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 143/416 (34%), Positives = 207/416 (49%), Gaps = 63/416 (15%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF LGL +LV A +G + P+ IQQ +IP +L GKDV+A A+TG+GKT + LPLL
Sbjct: 2 SFSSLGLSEQLVRATADQGYETPSPIQQQAIPAVLSGKDVMAAAQTGTGKTAGFTLPLLQ 61
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELC--KGQVQLKVVQLTSSMPAS 144
RL +P++ P AL+L PTREL QV+ V + K V V++ M
Sbjct: 62 RL--AENPRTGKGPRALILTPTRELAAQVHDSVNLYSKYVPTKAAVVFGGVKINPQM--M 117
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
LR L D+++ATPG + Q+ + ++ILVLDEAD +L G+ D++
Sbjct: 118 KLRKGL----DVLVATPGRLMDLYQ----QNAVRFNEVEILVLDEADRMLDMGFIRDIRK 169
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQ 259
+ A++P Q LL SAT S+++ L + +L NP V+ EV +N V+Q
Sbjct: 170 ILALLPAKRQNLLFSATFSNEIRTLAQGLLDNP----------VQVEVAARNTTAEKVKQ 219
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+ K + L++ + + L+FT T A RL LEK GI +A ++ Q
Sbjct: 220 SVYPVDQSQKTALLSKLVR-DNAWDQVLVFTRTKHGANRLTQKLEKDGITAAAIHGNKSQ 278
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
+R L +F AG L+ATD RG
Sbjct: 279 GARTRALADFKAGEVRVLVATDI---------------------------------AARG 305
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+D K + V+NFE+P YVHRIGRTGRA +G ++SLVS DE K+ I+ +
Sbjct: 306 LDIKQLPQVVNFELPNVPEDYVHRIGRTGRAGESGHALSLVSADEGKLLAGIEKLI 361
>gi|78485124|ref|YP_391049.1| DEAD/DEAH box helicase [Thiomicrospira crunogena XCL-2]
gi|78363410|gb|ABB41375.1| ATP-dependent RNA helicase [Thiomicrospira crunogena XCL-2]
Length = 445
Score = 198 bits (503), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 140/413 (33%), Positives = 204/413 (49%), Gaps = 56/413 (13%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
+F LGL ++ A+ ++G + P+ IQ +IP +LEGKDV+A A+TG+GKT + LP+L
Sbjct: 2 TFASLGLSKPILDAVTQQGYETPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPILE 61
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
RL ++ P AL+L PTREL QV V E Q+ LK + + +
Sbjct: 62 RL-SKGKPAGPNQARALILTPTRELAAQVSDSV----ETYGKQLSLKSTVVFGGVKINPQ 116
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
L DI++ATPG + + ++ D L+ILVLDEAD +L G+ D+K +
Sbjct: 117 MMRLRKGVDILVATPGRLLDLFNQNAIK----FDQLEILVLDEADRMLDMGFIHDIKRIL 172
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF----WI 262
+P+ Q LL SAT S+++ +L K +++NP V+ V P+N WI
Sbjct: 173 KALPKNRQNLLFSATFSNEIRQLAKGLVNNP----------VEISVTPRNTTATTVTQWI 222
Query: 263 SCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 322
++ + +LT L E + LIF+ T A RL LE GIK+A ++ Q +R
Sbjct: 223 YPVDKGRKAALLTKLIKENDWSQVLIFSRTKHGANRLTKQLEGKGIKAAAIHGNKSQGAR 282
Query: 323 LHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDF 382
L F G L+ATD RGID
Sbjct: 283 TKALASFKDGTVQALVATDI---------------------------------AARGIDI 309
Query: 383 KNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ V+NF++P A YVHRIGRTGRA G +VSLVS DE+K I++ +
Sbjct: 310 DQLPHVVNFDLPNVAEDYVHRIGRTGRAGAVGEAVSLVSADEVKELAGIENLI 362
>gi|325091017|gb|EGC44327.1| ATP-dependent RNA helicase drs1 [Ajellomyces capsulatus H88]
Length = 828
Score = 197 bits (502), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 151/511 (29%), Positives = 241/511 (47%), Gaps = 70/511 (13%)
Query: 15 AEEEEAEAEEE----KSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARA 70
A EE+A A + KSF+ L ++ L G PT IQ+ +IP+ L GKDVV A
Sbjct: 289 APEEKASANGDLKSAKSFQAFSLSRPILRGLTSVGFTTPTPIQRKTIPVALLGKDVVGGA 348
Query: 71 KTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQV 130
TGSGKT A+++P+L RL P+ ++L+PTREL Q Y+ L
Sbjct: 349 VTGSGKTGAFIIPILERLLYR--PRKVPTSRVVILMPTRELAVQCYNVATKLATFT---- 402
Query: 131 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDE 189
+ QL + L PD++IATPG + S SF+ D+L+ILVLDE
Sbjct: 403 DITFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMR----NSASFTVDTLEILVLDE 458
Query: 190 ADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVK 249
AD +L G+ D+L + IP+ Q +L SAT +++VDKL ++ L+ P L + D K
Sbjct: 459 ADRMLEDGFADELNEILTTIPKSRQTMLFSATMTNNVDKLIRVGLNRPVRLMV----DAK 514
Query: 250 DEVIPKNVQQF--WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFG 307
+ + +Q+F E +L Y++ L K + + + ++F + A R+++ G
Sbjct: 515 KQTVGTLIQEFVRLRPGREEKRLGYLIVLCK-NIYKDRVIVFFRSKKEAHRVRIIFGLLG 573
Query: 308 IKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPK 367
+K L+ + Q R+ +E F G +L+ATD
Sbjct: 574 LKVTELHGSMSQEQRIKSVESFRDGKVSFLLATDVAS----------------------- 610
Query: 368 AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 427
RG+D K V TVIN+E PQ+ Y+HR+GRT RA +G + +L + + K+
Sbjct: 611 ----------RGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKV 660
Query: 428 FEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNE 487
+K+ V + + I++ A E+ ++ A+ + LR E
Sbjct: 661 ---VKAAVKTGRAQGAKIVSRLIETA----EADKWAAKVEEMQEEVQEI-------LREE 706
Query: 488 ILNSEKLKAHFEVNPKDLDLLKHDKDLSKKP 518
+ +A EV + +LL HDK++ +P
Sbjct: 707 KEEKQLAQAEMEVT-RGSNLLNHDKEIMSRP 736
>gi|453382028|dbj|GAC83496.1| putative ATP-dependent RNA helicase [Gordonia paraffinivorans NBRC
108238]
Length = 565
Score = 197 bits (502), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 142/419 (33%), Positives = 204/419 (48%), Gaps = 50/419 (11%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
+F ELG+D R+V AL G + IQ+ ++PL L+G D++ +A+TG GKT+ + +PLLH
Sbjct: 32 TFAELGVDERIVSALADDGKTQTFAIQELTLPLALQGDDLIGQARTGMGKTYGFGIPLLH 91
Query: 87 RLFN-ESSPKSKL--APAALVLVPTRELCQQVYS--EVMAL---IELCKGQVQ-LKVVQL 137
RL N E+S L P ALV+VPTRELC QV S E+ A + L G + LK+ +
Sbjct: 92 RLANAEASGIRPLDNTPRALVIVPTRELCIQVTSDLEIAARKTDVTLADGTNRMLKITSI 151
Query: 138 TSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYG 197
P A L D+V+ TPG + G L + ILVLDEAD +L G
Sbjct: 152 YGGRPYESQIAELQSGVDVVVGTPGRLLDLAQQGHL----VLGKVAILVLDEADEMLDLG 207
Query: 198 YEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNV 257
+ D++ + A +P Q +L SAT + L + LH P T + D +
Sbjct: 208 FLPDIERIMAALPTPRQTMLFSATMPGPIVTLARTFLHRP---THIRAENANDSAVHDRT 264
Query: 258 QQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAEL 317
QF DK + +L+ E + +IFT T A ++ L + G K ++ +L
Sbjct: 265 TQFAYRAHALDKAELVARILQAE-GRGATMIFTRTKRTAQKVADDLAERGFKVGAVHGDL 323
Query: 318 PQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVV 377
Q +R L++F G D L+ATD
Sbjct: 324 GQVAREKALKKFRDGSIDVLVATDV---------------------------------AA 350
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
RGID +V VIN++ P++ YVHRIGRTGRA TG +V+LV DE+ +E I +G
Sbjct: 351 RGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGIAVTLVDWDELHRWELIDKALG 409
>gi|393240212|gb|EJD47739.1| DEAD-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 778
Score = 197 bits (502), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 154/520 (29%), Positives = 244/520 (46%), Gaps = 74/520 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF + L ++ AL PT IQ ++IP+ L GKD+V A TGSGKT A+++P+L
Sbjct: 174 SFLSMNLSRPILKALTALNFHTPTPIQASTIPVALLGKDIVGNAVTGSGKTAAFVIPMLE 233
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
RL K+ A ++LVPTREL Q + L ++ + +
Sbjct: 234 RLLYRDKSKNAAATRCVILVPTRELAVQCFDVATKLA----AHTDVRFCLIVGGLSVKAQ 289
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKAL 205
A+L PD+VIATPG + L + F D++ ILVLDEAD +LS G+ D+L +
Sbjct: 290 EASLRLRPDVVIATPGRLIDHLRN----APQFGLDAVDILVLDEADRMLSDGFADELAEI 345
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
PRG Q +L SAT + VD+L K+ L+ P L + D K VQ+F
Sbjct: 346 VQACPRGRQTMLFSATMTDSVDELVKMSLNKPVRLFV----DAKRTTARSLVQEFVRVRR 401
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
E D+ + L K + +A+IF + +A ++++ + + L+ +L Q RL
Sbjct: 402 EEDRGGMLAALCK-RTFKARAIIFFRSKKLAHQMRVAFALLNLNAGELHGDLTQEQRLRS 460
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
L++F G D+L+ATD L S RG+D K V
Sbjct: 461 LQQFRDGQIDFLMATD----------------------------LAS-----RGLDIKGV 487
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNI 445
VIN++MP A Y+HR+GRT RA G SV+LV + K+ + + +D++
Sbjct: 488 EVVINYDMPGQLAQYLHRVGRTARAGARGRSVTLVGESDRKMLKAAIKHSANASKDDADK 547
Query: 446 IAPFPLLAQNAVESLRYRA---EDVAKSVTKIAVRESRAQDLRNEILN------SEKLKA 496
+ E++R+R + +AK +A DL++EI+ EK
Sbjct: 548 VD----------ETVRHRVVPPDALAKWTAALA-------DLKDEIVRVLAEEKEEKAIR 590
Query: 497 HFEVN-PKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKT 535
E+ K ++++H+K++ +P + + D A+T
Sbjct: 591 QAEMQIKKGENMIEHEKEIFSRPARTWFQSEKDKAKSAET 630
>gi|426225486|ref|XP_004006897.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Ovis aries]
Length = 457
Score = 197 bits (502), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 137/437 (31%), Positives = 222/437 (50%), Gaps = 53/437 (12%)
Query: 1 MGKSKEIPSKEVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLI 60
M S E S+E A + E EE K+F++LG+ L A ++ G KPT IQ +IPL
Sbjct: 1 MAASVEHDSREGMDAPQTAVEVEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLA 60
Query: 61 LEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVM 120
L+G+D++ A+TGSGKT A+ LP+L+ L +P+ ALVL PTREL Q+ +
Sbjct: 61 LQGRDIIGLAETGSGKTGAFALPILNALLE--TPQRLF---ALVLTPTRELAFQISEQFE 115
Query: 121 ALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS- 179
AL + ++ + + + ALA P +VIATPG + L +K F+
Sbjct: 116 AL----GSSIGVQCAVIVGGIDSMSQSLALAKKPHVVIATPGRLIDHLE----NTKGFNL 167
Query: 180 DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYI 239
+LK LV+DEAD +L+ +E ++ + VIPR + L SAT + V KL++ L NP
Sbjct: 168 RALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVK 227
Query: 240 LTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRL 299
+ K + + K +QQ+++ + K Y++ +L EL +IF +T + R
Sbjct: 228 CAVSS----KYQTVEK-LQQYYLFIPSKFKDTYLVYILN-ELAGNSFMIFCSTCNNTQRT 281
Query: 300 KLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDS 359
L L G + L+ ++ Q+ RL L +F A L+ATD
Sbjct: 282 ALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVAS--------------- 326
Query: 360 RKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSL 419
RG+D +V V+NF++P ++ Y+HR+GRT RA +G +++
Sbjct: 327 ------------------RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITF 368
Query: 420 VSPDEMKIFEEIKSFVG 436
V+ ++++F+ I+ +G
Sbjct: 369 VTQYDVELFQRIEHLIG 385
>gi|440910729|gb|ELR60491.1| Putative ATP-dependent RNA helicase DDX47 [Bos grunniens mutus]
Length = 457
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 138/437 (31%), Positives = 222/437 (50%), Gaps = 53/437 (12%)
Query: 1 MGKSKEIPSKEVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLI 60
M S E S E +A + E EE K+F++LG+ L A ++ G KPT IQ +IPL
Sbjct: 1 MAASVEHDSLESMEAPQTAVEVEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLA 60
Query: 61 LEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVM 120
L+G+D++ A+TGSGKT A+ LP+L+ L +P+ ALVL PTREL Q+ +
Sbjct: 61 LQGRDIIGLAETGSGKTGAFALPILNALLE--TPQRLF---ALVLTPTRELAFQISEQFE 115
Query: 121 ALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS- 179
AL + ++ + + + ALA P IVIATPG + L +K F+
Sbjct: 116 AL----GSSIGVQCAVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLE----NTKGFNL 167
Query: 180 DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYI 239
+LK LV+DEAD +L+ +E ++ + VIPR + L SAT + V KL++ L NP
Sbjct: 168 RALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVK 227
Query: 240 LTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRL 299
+ K + + K +QQ+++ + K Y++ +L EL +IF +T + R
Sbjct: 228 CAVSS----KYQTVEK-LQQYYLFIPSKFKDTYLVYILN-ELAGNSFMIFCSTCNNTQRT 281
Query: 300 KLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDS 359
L L G + L+ ++ Q+ RL L +F A L+ATD
Sbjct: 282 ALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVAS--------------- 326
Query: 360 RKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSL 419
RG+D +V V+NF++P ++ Y+HR+GRT RA +G +++
Sbjct: 327 ------------------RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITF 368
Query: 420 VSPDEMKIFEEIKSFVG 436
V+ ++++F+ I+ +G
Sbjct: 369 VTQYDVELFQRIEHLIG 385
>gi|330448478|ref|ZP_08312126.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
gi|328492669|dbj|GAA06623.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
Length = 494
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 145/407 (35%), Positives = 207/407 (50%), Gaps = 62/407 (15%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF LGL ++ A+ K+G +KP+ IQ+ +IP ILEGKDV+A A+TG+GKT + LPLL
Sbjct: 2 SFASLGLSAPILDAVAKQGYEKPSPIQEKAIPAILEGKDVMAAAQTGTGKTAGFTLPLLE 61
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCK--GQVQLKVVQLTSSMPAS 144
RL +S ALVL PTREL QV V + + V V++ M
Sbjct: 62 RLAGGCPARSNHV-RALVLTPTRELAAQVGESVATYGKNLRISSAVVFGGVKVNPQM--- 117
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
LR D+++ATPG + S ++ F D ++ILVLDEAD +L G+ D++
Sbjct: 118 -LRMRKGA--DVLVATPGRLMDLHSQNAVK---FRD-IEILVLDEADRMLDMGFIRDIRK 170
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQ 259
+ A++P+ Q LL SAT S ++ +L K ++++P V+ +V P+N V+Q
Sbjct: 171 ILALLPKERQNLLFSATFSDEIRELAKGLVNDP----------VEIDVNPRNQTARTVKQ 220
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
WI ++ K +LT L E K+ L+FT T A +L LE GI +A ++ Q
Sbjct: 221 -WICPVDKKKKPNLLTKLLSERNWKQVLVFTKTKHGANKLSAHLESRGITAAAIHGNKSQ 279
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
+R L F AG L+ATD RG
Sbjct: 280 GARTKALANFKAGEIRVLVATDI---------------------------------AARG 306
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMK 426
+D + V+NF++P A YVHRIGRTGRA G ++SLVS DE K
Sbjct: 307 LDIDQLPQVVNFDLPHVAEDYVHRIGRTGRAGCEGEAISLVSADEFK 353
>gi|372267577|ref|ZP_09503625.1| DEAD/DEAH box helicase [Alteromonas sp. S89]
Length = 474
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 144/416 (34%), Positives = 211/416 (50%), Gaps = 64/416 (15%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
FE+LGL + A+ ++G +PT IQQ +IP+++ G DV+A A+TG+GKT + LPLLHR
Sbjct: 3 FEDLGLAPEIARAVAEQGYTQPTPIQQQAIPVVMRGGDVMAAAQTGTGKTAGFTLPLLHR 62
Query: 88 LFNESSPKSKLAPA-ALVLVPTRELCQQVYSEVMALIEL--CKGQVQLKVVQLTSSMPAS 144
L + P+++ ALVL PTREL QV+ V + E + V V++ M
Sbjct: 63 L--SAGPRARNNQVRALVLTPTRELAAQVFDNVQSYSEHLPMRHSVVFGGVKINPQM--- 117
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
+R L G DI++ATPG + + ++ D L+ LVLDEAD +L G+ D+K
Sbjct: 118 -MR--LRGGADILVATPGRLLDLYNQRAIK----FDRLETLVLDEADRMLDMGFIHDIKK 170
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQ 259
+ V+P Q LL SAT S ++ L K ++++P V+ +V P+N VQQ
Sbjct: 171 ILRVLPEKRQNLLFSATFSPEIRSLAKGLVNDP----------VEIDVAPRNSTTKTVQQ 220
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+ K + L+K E +AL+F+ T A RL LE+ I +A ++ Q
Sbjct: 221 KLHPVDKSRKASLLCHLIK-ENGWHQALVFSRTKHGANRLAKQLEQHRIPAAAIHGNKSQ 279
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
N+R L EF G L+ATD RG
Sbjct: 280 NARTKALAEFKNGKVQILVATDI---------------------------------AARG 306
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
ID + V+NF++P YVHRIGRTGRA +G +VSLVS DE+K +I+ +
Sbjct: 307 IDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGHAVSLVSADEIKQLRDIERLI 362
>gi|448090292|ref|XP_004197032.1| Piso0_004267 [Millerozyma farinosa CBS 7064]
gi|448094692|ref|XP_004198063.1| Piso0_004267 [Millerozyma farinosa CBS 7064]
gi|359378454|emb|CCE84713.1| Piso0_004267 [Millerozyma farinosa CBS 7064]
gi|359379485|emb|CCE83682.1| Piso0_004267 [Millerozyma farinosa CBS 7064]
Length = 500
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 145/440 (32%), Positives = 214/440 (48%), Gaps = 58/440 (13%)
Query: 3 KSKEIPSKEVKQAEEE---EAEAEEEK--SFEELGLDLRLVHALNKKGIQKPTLIQQASI 57
K +E E KQ E+ E EE K SF EL L L+ +N+ KPT IQ +I
Sbjct: 61 KREERSKNEAKQDSEDTSKEVTVEESKVESFSELNLIPELLETINEMKFTKPTPIQAEAI 120
Query: 58 PLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYS 117
P LEGKD++ A+TGSGKT A+ +P+L L++ +P LVL PTREL Q+
Sbjct: 121 PHALEGKDIIGLAQTGSGKTAAFAIPILQSLWDAQTPY-----FGLVLAPTRELAYQIKE 175
Query: 118 EVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKS 177
AL + L+ V + M D L P I++ATPG + L +K
Sbjct: 176 TFDAL----GSSMGLRTVCIVGGMDMMDQARDLMRRPHILVATPGRIMDHLE----HTKG 227
Query: 178 FS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHN 236
FS +LK LV+DEAD LL + L + VIP L SAT +S V+KL++ LHN
Sbjct: 228 FSLKNLKYLVMDEADRLLDMDFGPALDKILKVIPTQRTTYLFSATMTSKVEKLQRASLHN 287
Query: 237 PYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMA 296
P + + D N+ Q + S+ K Y++ LL E V K ++FT T +
Sbjct: 288 PVKVAVSTKYQTAD-----NLVQSMMLVSDGYKNTYLIHLLN-EFVGKSIIVFTRTCAHS 341
Query: 297 FRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGH 356
R L G + L+ +L Q+ RL L +F +G + L+ATD
Sbjct: 342 QRTSLLARILGFSAVPLHGQLSQSQRLGSLNKFKSGKSNILVATD--------------- 386
Query: 357 VDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGAS 416
RG+D +V VIN+++P ++ Y+HR+GRT RA +G S
Sbjct: 387 ------------------VAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGKSGKS 428
Query: 417 VSLVSPDEMKIFEEIKSFVG 436
+SLV+ +++++ I++ +G
Sbjct: 429 ISLVTQYDLELYLRIENVLG 448
>gi|350571452|ref|ZP_08939778.1| ATP-dependent RNA helicase RhlE [Neisseria wadsworthii 9715]
gi|349792116|gb|EGZ45981.1| ATP-dependent RNA helicase RhlE [Neisseria wadsworthii 9715]
Length = 441
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 136/413 (32%), Positives = 201/413 (48%), Gaps = 55/413 (13%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F +L D ++ AL +G + PT IQ ++P LEG+D++A A+TGSGKT A+LLP L R
Sbjct: 5 FSDLLHDKNILSALKTEGYETPTPIQAQALPAALEGRDIMAGAQTGSGKTAAFLLPTLQR 64
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
L + S KS P ALVL PTREL QV A K + V +
Sbjct: 65 L-TKRSEKSGKGPRALVLAPTRELAAQVEKNAQA---YAKNMKWFRTVTIVGGSSFGQQI 120
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
AL+ P D+V+ATPG + + +G K D L++L+LDEAD +L G+ DD++ + A
Sbjct: 121 RALSKPVDLVVATPGRLMDLMDSG----KVDFDRLEVLILDEADRMLDMGFIDDIETIVA 176
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE- 266
P Q LL SAT V KL + + NP ++ + V D +++ + C +
Sbjct: 177 ATPESRQTLLFSATWDGAVGKLARKLTKNPEVIEIERVDD------QGKIEEQLLYCDDK 230
Query: 267 --RDKLL-YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+D+LL YIL ++ + +IFT+T M L L G + L+ ++PQ R
Sbjct: 231 RHKDRLLDYILRDANID----QCVIFTSTKAMTEVLADELYDKGFAANCLHGDMPQGWRN 286
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
L + G L+ATD RGID
Sbjct: 287 RTLMDLRKGRCKILVATDV---------------------------------AARGIDVP 313
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
+ VIN+++P+ A YVHRIGRTGRA TG +++ +E +I+ ++G
Sbjct: 314 TITHVINYDLPKQAEDYVHRIGRTGRAGRTGLAITFAEVNEYVKVHKIEKYIG 366
>gi|347537925|ref|YP_004845349.1| ATP-dependent RNA helicase [Pseudogulbenkiania sp. NH8B]
gi|345641102|dbj|BAK74935.1| ATP-dependent RNA helicase [Pseudogulbenkiania sp. NH8B]
Length = 560
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 144/416 (34%), Positives = 207/416 (49%), Gaps = 52/416 (12%)
Query: 25 EKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPL 84
E F +LGL L+ A+ + G PT IQ +IP +++G D++A A+TG+GKT + LPL
Sbjct: 3 EIKFTDLGLSEPLLRAVAETGYTTPTPIQAQAIPQVIKGGDLLAAAQTGTGKTAGFTLPL 62
Query: 85 LHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELC--KGQVQLKVVQLTSSMP 142
LHRL + K P ALVL PTREL QV V + K V V + +
Sbjct: 63 LHRL-GPAPTHLKGRPRALVLTPTRELAAQVEESVRTYGKYLPHKSMVMFGGVGINPQI- 120
Query: 143 ASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 202
AAL P DI++ATPG + L ++ S ++ILVLDEAD +L G+ D+
Sbjct: 121 -----AALRKPLDILVATPG---RLLDHAGQKTVDLS-GVEILVLDEADRMLDMGFIHDI 171
Query: 203 KALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWI 262
K + A++P Q LL SAT S ++ L +L+NP ++ + + +E++ + V
Sbjct: 172 KKVLALLPAKRQNLLFSATFSDEIKALADRLLNNPQLVEVARR-NTANELVEQKVH---- 226
Query: 263 SCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 322
+RDK +LT L + + L+FT T A RL L+K GI +A ++ QN+R
Sbjct: 227 -LVDRDKKTELLTHLISQGDWHQVLVFTRTKHGANRLAEKLDKSGITAAAIHGNKSQNAR 285
Query: 323 LHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDF 382
L +F A L+ATD RG+D
Sbjct: 286 TKALADFKANTLQVLVATDI---------------------------------AARGLDI 312
Query: 383 KNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD 438
+ V+NFE+P YVHRIGRTGRA N G +VSLV DE K ++I+ + D
Sbjct: 313 DQLPHVVNFELPNVPEDYVHRIGRTGRAGNEGEAVSLVCVDEFKFLKDIEKLIKKD 368
>gi|325179957|emb|CCA14359.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
Length = 843
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 133/395 (33%), Positives = 195/395 (49%), Gaps = 45/395 (11%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
+F + L ++ ALN+ + KPTLIQ+ +IP+ L GKD+ A A+TGSGKT A+LLP+L
Sbjct: 217 TFADFKLSRPILRALNQMELTKPTLIQEYAIPMALLGKDICASAQTGSGKTAAFLLPILE 276
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
RL + + A +++ P REL Q S LI+L + + + +P
Sbjct: 277 RL--QLRTRRIAATRVIIICPVRELATQCQS---VLIKLARF-TDITSALVVGGLPLKAQ 330
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
L PDI++ TPG M L DSL+ILVLDEAD LL G+ ++++ +
Sbjct: 331 ELELRTCPDIIVCTPGRMIDHLRNS---PSVHLDSLEILVLDEADRLLELGFTEEIQEIV 387
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
+ PR Q +L SAT +S +D+L L + P + + D+ ++ + V+ ++
Sbjct: 388 RMCPRARQTMLFSATMTSKIDQLIALSMKRPVRICADPLYDMSKHLVQEFVRIRPNREAD 447
Query: 267 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
RD +L L L Q K ++F T A R+ + GIK+A L+ L Q RL L
Sbjct: 448 RDAIL--LALCTRAFTQ-KTIVFMETKVHAHRMMILFGLSGIKAAELHGNLTQQERLDAL 504
Query: 327 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 386
E+F G D L+ TD RGID K V
Sbjct: 505 EKFRQGAVDILLCTD---------------------------------VAARGIDVKGVR 531
Query: 387 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS 421
VIN+EMP++ YVHR+GRT RA G +V+L S
Sbjct: 532 AVINYEMPKDITTYVHRVGRTARAGQVGRAVTLTS 566
>gi|217970063|ref|YP_002355297.1| DEAD/DEAH box helicase [Thauera sp. MZ1T]
gi|217507390|gb|ACK54401.1| DEAD/DEAH box helicase domain protein [Thauera sp. MZ1T]
Length = 545
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 141/420 (33%), Positives = 215/420 (51%), Gaps = 66/420 (15%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF +LGL L+ A+ G +PT IQ+ +IP+++ GKDV+ A+TG+GKT + LPLLH
Sbjct: 2 SFADLGLIPELLQAVTDAGYTEPTPIQRQAIPIVIAGKDVMGGAQTGTGKTAGFTLPLLH 61
Query: 87 RL---FNESSPKSKLAPAALVLVPTRELCQQV------YSEVMALIELC-KGQVQLKVVQ 136
R+ N S+ ++ AL+L PTREL QV YS+ + L +C G V ++ Q
Sbjct: 62 RIARHANTSTSPARHQTRALILAPTRELAMQVFESVKTYSKHLPLRSVCVYGGVDIRPQQ 121
Query: 137 LTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS-LKILVLDEADLLLS 195
++LR + +IVIATPG + L+ KS + S +++LVLDEAD +L
Sbjct: 122 -------AELRRGI----EIVIATPGRL-----LDHLEQKSINLSQVEVLVLDEADRMLD 165
Query: 196 YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK 255
G+ D+K + A++P+ Q LL SAT S ++ +L +L P ++ + V + +
Sbjct: 166 MGFIPDIKRILALLPKQRQSLLFSATFSDEIKRLADQMLKEPQLIEVARRNMVSETIT-- 223
Query: 256 NVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNA 315
+V S +R+ L ++L +AL+F +T M RL +LE+ GI + ++
Sbjct: 224 HVVHPVSSGMKRNLLAHLLR----HKPDTQALVFVDTKLMCGRLAHYLERSGISADAIHG 279
Query: 316 ELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFG 375
+ Q R LE F +G L+ATD
Sbjct: 280 DKGQQQRTDTLEAFKSGKLRVLVATDV--------------------------------- 306
Query: 376 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
RG+D + VINFE+P A YVHRIGRTGRA + G ++SLVS +E EI+ +
Sbjct: 307 AARGLDIDELPFVINFELPHTAEDYVHRIGRTGRAGHHGYAISLVSSEEKHWLSEIEKLI 366
>gi|375133072|ref|YP_005049480.1| ATP-dependent RNA helicase RhlE [Vibrio furnissii NCTC 11218]
gi|315182247|gb|ADT89160.1| ATP-dependent RNA helicase RhlE [Vibrio furnissii NCTC 11218]
Length = 397
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 140/412 (33%), Positives = 210/412 (50%), Gaps = 52/412 (12%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF +LGL L A+ + G QKPT IQ +IP+IL+G+D++A A+TG+GKT +++LP+LH
Sbjct: 2 SFSKLGLSEALTQAVAELGYQKPTTIQTKAIPVILQGQDLIAAAQTGTGKTASFVLPILH 61
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQ-VQLKVVQLTSSMPASD 145
+L + + K AL+LVPTREL QV +V GQ L + + +
Sbjct: 62 KLQGRETQRKKRI-RALILVPTRELAIQVADKVAQY-----GQHTGLTTLAMYGGVEEQA 115
Query: 146 LRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL 205
+ L D+++ATPG + Q + + ++I+VLDEAD +L G+ D + +
Sbjct: 116 QKQRLIEGVDVLVATPGRLLDMYG----QRAVYFEEVEIVVLDEADRMLDMGFIDSINKI 171
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
+PR Q LL SAT S V L K +++P+ E+ ++ N++Q W+
Sbjct: 172 IDRLPRDAQYLLFSATLSHKVRDLAKTAVNDPF-----EISIAANQASKSNIEQ-WLITV 225
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
++DK +L+ L E +ALIF T A +L LEK GI + ++ Q R+ +
Sbjct: 226 DKDKKSALLSHLITENNWDQALIFIETKHGAAKLASQLEKRGITAEAFHSGRSQAVRVQL 285
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGV-VRGIDFKN 384
LE+F AG Y+IAT GV RGID
Sbjct: 286 LEDFKAGKIKYMIAT----------------------------------GVGARGIDIHE 311
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
+ V+N+++P A YVHRIGRTGRA G ++S VS D K I+S +G
Sbjct: 312 LSRVVNYDLPFPADEYVHRIGRTGRANAKGEAISFVSKDNFKNLCMIESRLG 363
>gi|114052016|ref|NP_001039850.1| probable ATP-dependent RNA helicase DDX47 [Bos taurus]
gi|109825481|sp|Q29S22.1|DDX47_BOVIN RecName: Full=Probable ATP-dependent RNA helicase DDX47; AltName:
Full=DEAD box protein 47
gi|88758683|gb|AAI13208.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Bos taurus]
gi|296487253|tpg|DAA29366.1| TPA: probable ATP-dependent RNA helicase DDX47 [Bos taurus]
Length = 457
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 138/437 (31%), Positives = 222/437 (50%), Gaps = 53/437 (12%)
Query: 1 MGKSKEIPSKEVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLI 60
M S E S E +A + E EE K+F++LG+ L A ++ G KPT IQ +IPL
Sbjct: 1 MAASVEHDSLESMEAPQTAVEVEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLA 60
Query: 61 LEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVM 120
L+G+D++ A+TGSGKT A+ LP+L+ L +P+ ALVL PTREL Q+ +
Sbjct: 61 LQGRDIIGLAETGSGKTGAFALPILNALLE--TPQRLF---ALVLTPTRELAFQISEQFE 115
Query: 121 ALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS- 179
AL + ++ + + + ALA P IVIATPG + L +K F+
Sbjct: 116 AL----GSSIGVQCAVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLE----NTKGFNL 167
Query: 180 DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYI 239
+LK LV+DEAD +L+ +E ++ + VIPR + L SAT + V KL++ L NP
Sbjct: 168 RALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVK 227
Query: 240 LTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRL 299
+ K + + K +QQ+++ + K Y++ +L EL +IF +T + R
Sbjct: 228 CAVSS----KYQTVEK-LQQYYLFIPSKFKDTYLVYILN-ELAGNSFMIFCSTCNNTQRT 281
Query: 300 KLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDS 359
L L G + L+ ++ Q+ RL L +F A L+ATD
Sbjct: 282 ALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVAS--------------- 326
Query: 360 RKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSL 419
RG+D +V V+NF++P ++ Y+HR+GRT RA +G +++
Sbjct: 327 ------------------RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITF 368
Query: 420 VSPDEMKIFEEIKSFVG 436
V+ ++++F+ I+ +G
Sbjct: 369 VTQYDVELFQRIEHLIG 385
>gi|336314302|ref|ZP_08569221.1| DNA/RNA helicase, superfamily II [Rheinheimera sp. A13L]
gi|335881315|gb|EGM79195.1| DNA/RNA helicase, superfamily II [Rheinheimera sp. A13L]
Length = 420
Score = 197 bits (501), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 135/406 (33%), Positives = 211/406 (51%), Gaps = 47/406 (11%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF LGLD R++ A+ +G PT IQQ +IP+ILEGKDV+A A+TG+GKT A+ LP+L
Sbjct: 2 SFATLGLDPRILSAVTNQGYHTPTPIQQQTIPVILEGKDVLAGAQTGTGKTAAFTLPVLQ 61
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
L ++ S L LVL PTREL QQV V A + LK + +
Sbjct: 62 LLSKNTTKVSHLQVRCLVLTPTRELAQQVADSVKA----YGADLPLKYAVFYGGVSINPQ 117
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
+ DI++ATPG + L G + S S+ L+ILVLDEAD +L G+ D+K +
Sbjct: 118 YDQASRGLDILVATPGRLLDHLHQGTV---SLSE-LQILVLDEADRMLDMGFIHDIKRIM 173
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
A +P+ Q L SAT + ++ +L +L +P ++ + + D++ + + S +
Sbjct: 174 ARLPKERQTLFFSATFAKEIKELADTLLKSPVLIEVAKPNSTADKI--EQLAYRVDSQRK 231
Query: 267 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
R+ L Y++ + K+ LIF+ T A RL L GI++ ++ + Q +R L
Sbjct: 232 REMLSYLIGSRQW----KQVLIFSRTKHGADRLAKQLRLDGIEAGAIHGDKSQGARTKAL 287
Query: 327 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 386
++F L+ATD RG+D + +
Sbjct: 288 DDFKNNRLSVLVATDIA---------------------------------ARGLDIEELP 314
Query: 387 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432
V+N+++PQ A YVHRIGRTGRA N+G ++SL++PD++ + + I+
Sbjct: 315 IVVNYDLPQVAEDYVHRIGRTGRAGNSGLALSLITPDDLVMLQAIE 360
>gi|59713736|ref|YP_206511.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
gi|59481984|gb|AAW87623.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
Length = 460
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 137/413 (33%), Positives = 211/413 (51%), Gaps = 49/413 (11%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F++LGLD RL+ L + I+ PT IQ+ ++P+ + GKDV+A +KTGSGKT A++LP+LH+
Sbjct: 18 FKDLGLDNRLLKNLAHQNIKTPTEIQRKAVPVAIAGKDVLASSKTGSGKTLAFVLPMLHK 77
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
S SK P A++L PTREL +QVYS + A++ G + +T +D
Sbjct: 78 SLKTKSF-SKNDPRAVILAPTRELAKQVYSHLRAML----GGLTYDATLITGGENFNDQV 132
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS- 206
AL P ++ATPG + L L + D L+ L+LDEAD +L G+ + L+ +
Sbjct: 133 NALRKHPKFIVATPGRLADHLEHQSL----YLDGLETLILDEADRMLDLGFAEHLQKIHK 188
Query: 207 AVIPRGCQCLLMSATSSSD-VDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
A R Q L+ SAT D V+K +L NP ++ VG DE K++ Q + C
Sbjct: 189 AASHRRRQTLMFSATLDHDAVNKFAGNMLDNPKRIS---VGLSNDE--HKDITQRFYLCD 243
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
D IL + + +IFT T RL L + +K+ L+ ++ Q +R +I
Sbjct: 244 HLDHKQAILNKIIETEDYFQIMIFTATRSDTDRLTKLLNEENLKAVALSGDMNQTARNNI 303
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
+ +F + L+ TD RG+D +V
Sbjct: 304 MSQFERRVHKILVTTDVAS---------------------------------RGLDLTSV 330
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD 438
VINF+MP++ YVHR+GRTGRA G ++SLV P + + F+ +++F+ D
Sbjct: 331 THVINFDMPKHMEEYVHRVGRTGRAGKKGTAISLVGPKDWESFKRVETFLQQD 383
>gi|119504065|ref|ZP_01626146.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
HTCC2080]
gi|119460068|gb|EAW41162.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
HTCC2080]
Length = 437
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 138/414 (33%), Positives = 210/414 (50%), Gaps = 58/414 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF LGL L+ A+ +G P+ IQ +IP +LEG+DV+A A+TG+GKT + LPLLH
Sbjct: 2 SFSTLGLSESLLKAVADEGYTTPSPIQAQAIPAVLEGRDVMAAAQTGTGKTAGFTLPLLH 61
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
L ++ P ALVL PTREL QV V ++ + L+ + + +
Sbjct: 62 GL-SKGQPAKANQVRALVLTPTRELAAQVAESV----DIYGKYLNLRSAVVFGGVKINPQ 116
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
L DI+IATPG + L + SF L++L+LDEAD +L G+ D++ +
Sbjct: 117 MMRLRKGVDILIATPG---RLLDLYQQNAMSF-QKLEVLILDEADRMLDMGFIHDIRRIM 172
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQFW 261
+P Q L+ SAT S D+ L K I++NP V+ V P+N V Q W
Sbjct: 173 KALPNKRQNLMFSATFSEDIRDLAKTIVNNP----------VEISVTPRNSTAVSVTQ-W 221
Query: 262 ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 321
I ++++ ++L L + ++ L+F+ T A RL FL+K GI++A ++ Q +
Sbjct: 222 IHPVDKNQKRHLLVELINQHNWEQVLVFSRTKRGANRLAEFLDKKGIQAAAIHGNKSQGA 281
Query: 322 RLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGID 381
R L EF +G L+ATD RG+D
Sbjct: 282 RTRALSEFKSGKLRVLVATDI---------------------------------AARGLD 308
Query: 382 FKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ + V+N ++P+ A YVHRIGRTGRA TG ++SLVS DE ++ ++I+ +
Sbjct: 309 IEQLPQVVNLDLPEVAQDYVHRIGRTGRAGATGQAISLVSADEAQLLQDIERLI 362
>gi|330828434|ref|YP_004391386.1| DEAD box family ATP-dependent RNA helicase [Aeromonas veronii B565]
gi|423210879|ref|ZP_17197432.1| hypothetical protein HMPREF1169_02950 [Aeromonas veronii AER397]
gi|328803570|gb|AEB48769.1| ATP-dependent RNA helicase, DEAD box family [Aeromonas veronii
B565]
gi|404614274|gb|EKB11275.1| hypothetical protein HMPREF1169_02950 [Aeromonas veronii AER397]
Length = 416
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 147/415 (35%), Positives = 212/415 (51%), Gaps = 59/415 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF EL L RL L + G PT IQ +IP+IL G+D++A A+TG+GKT A++LPLL
Sbjct: 5 SFAELALSPRLQQTLTELGYAAPTPIQARAIPVILAGRDLMAGAQTGTGKTAAFVLPLLE 64
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
+L + +S+ ALVLVPTREL QV +E +A G +V S D
Sbjct: 65 QLLAQPQMESQRPIRALVLVPTRELAVQV-AESVARYGQGTGLTSTQVYGGVSIAAQVD- 122
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
AL D++IATPG + L G L DSL+ LV DEAD +L G+ D++ AL
Sbjct: 123 --ALKNGVDLLIATPGRLLDHLRQGALS----LDSLRHLVFDEADRMLDMGFMDEITALL 176
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNV------QQF 260
+P Q LL SAT ++ L K++L +P ++ EV P+N Q+
Sbjct: 177 KQLPVDRQTLLFSATCDDNLFALSKVLLRDPELI----------EVAPRNTTAAEVEQRV 226
Query: 261 WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 320
+ S+R KL + +LK++ ALIF+ T A +L L K GI + + +L Q+
Sbjct: 227 YTVDSDR-KLALVEHMLKVK-GWAPALIFSRTRQGADKLAQQLGKSGINALAFHGDLSQS 284
Query: 321 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 380
+R +L EF AG L+ATD RG+
Sbjct: 285 AREKVLLEFRAGTLQALVATDV---------------------------------AARGL 311
Query: 381 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
D +++ VIN E P A YVHRIGRTGRA N G +++L SP++ + E++++ +
Sbjct: 312 DITDLNYVINLEFPFVAEDYVHRIGRTGRAGNKGLAITLFSPEDTPLLEKVEAVL 366
>gi|218186850|gb|EEC69277.1| hypothetical protein OsI_38328 [Oryza sativa Indica Group]
Length = 802
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 149/433 (34%), Positives = 207/433 (47%), Gaps = 63/433 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF EL L L+ A G QKPT IQ A IPL L G+D+ A TGSGKT A+ LP+L
Sbjct: 195 SFLELNLSRPLLRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLE 254
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
RL PK A L+L PTREL V+S + L + + L V L++ + L
Sbjct: 255 RLLFR--PKRVPAIRVLILTPTRELAAPVHSMIEKLAQFTDIRCCLIVGGLSTKVQEVAL 312
Query: 147 RAALAGPPDIVIATPG----CMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 202
R+ PDIV+ATPG + LS G+ + L IL+LDEAD LL G+ ++
Sbjct: 313 RSM----PDIVVATPGRIIDHLRNSLSVGL-------EDLAILILDEADRLLELGFSAEI 361
Query: 203 KALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL----TLPEVGDVKDEVIPKNVQ 258
+ L + PR Q +L SAT + ++++L L L+ P L +L + +EV+
Sbjct: 362 QELIRMCPRRRQTMLFSATMTEEINELVTLSLNKPVRLEADPSLKRPATLTEEVV----- 416
Query: 259 QFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELP 318
I + +L L L+ + K +IF+ T A RLK+ G+K+A L+ L
Sbjct: 417 --RIRRAREANQEAVLLALCLKTFKDKVIIFSGTKHSAHRLKIIFGLSGMKAAELHGNLT 474
Query: 319 QNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVR 378
Q RL LE F D+LIATD R
Sbjct: 475 QAQRLEALELFKKQEVDFLIATDV---------------------------------AAR 501
Query: 379 GIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD 438
GID V TVINF P++A Y+HR+GRT RA G +V+ V+ D+ + + I G
Sbjct: 502 GIDIVGVRTVINFSCPRDARTYLHRVGRTARAGREGYAVTFVTDDDRSLLKAIAKKAGSQ 561
Query: 439 ENEDSNIIAPFPL 451
S I+A P+
Sbjct: 562 LK--SRIVAEKPV 572
>gi|238028205|ref|YP_002912436.1| ATP-dependent RNA helicase 2 [Burkholderia glumae BGR1]
gi|237877399|gb|ACR29732.1| Putative ATP-dependent RNA helicase 2 [Burkholderia glumae BGR1]
Length = 480
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 133/419 (31%), Positives = 213/419 (50%), Gaps = 54/419 (12%)
Query: 25 EKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPL 84
+ +F++ GL ++ A+ +G KPT IQ +IP++L G+DV+ A+TG+GKT ++ LP+
Sbjct: 10 DATFDQFGLAPDILKAIADQGYTKPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPI 69
Query: 85 LHRLF---NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIE--LCKGQVQLKVVQLTS 139
+ RL N S+ ++ AL+L PTREL QV + V + + + V V +
Sbjct: 70 IQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHSYAKHTALRSAVVFGGVDMNP 129
Query: 140 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE 199
M ++LR + +I+IATPG L V Q + +++LVLDEAD +L G+
Sbjct: 130 QM--AELRRGV----EILIATPG----RLLDHVQQKTANLGQVQMLVLDEADRMLDMGFL 179
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
DL+ + ++P+ Q LL SAT S ++ KL L NP + + + NV Q
Sbjct: 180 PDLQRILNLLPKARQTLLFSATFSPEIKKLAATYLTNPQTIEV-----ARSNATATNVTQ 234
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+E DK ++ L++ + K+ ++F N+ A RL LE+ G+ + ++ + Q
Sbjct: 235 IVYDIAEGDKQAAVVKLIR-DRALKQVIVFCNSKIGASRLARLLERDGVVATAIHGDRSQ 293
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
N R+ LE F G + L+ATD RG
Sbjct: 294 NERMQALEAFKRGEVEALVATDV---------------------------------AARG 320
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD 438
+D + VINF++P +A YVHRIGRTGRA +G ++SL SP+E K +I+ + D
Sbjct: 321 LDIAELPAVINFDLPFSAEDYVHRIGRTGRAGASGDALSLCSPNERKQLADIEKLIKRD 379
>gi|156052799|ref|XP_001592326.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980]
gi|160358660|sp|A7EML8.1|RRP3_SCLS1 RecName: Full=ATP-dependent rRNA helicase rrp3
gi|154704345|gb|EDO04084.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980
UF-70]
Length = 482
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 136/422 (32%), Positives = 216/422 (51%), Gaps = 54/422 (12%)
Query: 26 KSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLL 85
KSF++LG+ L A + G + PT IQ+ SIPL L+G+D++ A+TGSGKT A+ LP+L
Sbjct: 56 KSFKDLGIVDSLCEACDTLGYKAPTPIQRESIPLALQGRDLIGLAETGSGKTAAFALPIL 115
Query: 86 HRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASD 145
L ++ P LVL PTREL Q+ AL + +++K + M
Sbjct: 116 QSLLDKPQPL-----FGLVLAPTRELAYQISQSFEALGSI----IRVKCAVIVGGMDMVP 166
Query: 146 LRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKA 204
AL P I++ATPG + L +K FS SLK LV+DEAD LL + L
Sbjct: 167 QAIALGKKPHIIVATPGRLLDHLE----NTKGFSLRSLKYLVMDEADRLLDLDFGPILDK 222
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-WIS 263
+ V+PR + L SAT SS V+ L++ L +P ++ + K + + +Q + +I
Sbjct: 223 ILKVLPRERRTYLFSATISSKVESLQRASLKDPLRVS---ISSNKYQTVSTLIQNYIFIP 279
Query: 264 CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+D Y++ LL E + A+IFT T++ R+ + L G + L+ +L Q+SRL
Sbjct: 280 LVHKDT--YLIYLLN-EFAGQSAIIFTRTVNETQRIAILLRTLGFGAIPLHGQLSQSSRL 336
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
L +F AG + L+ATD RG+D
Sbjct: 337 GALNKFRAGSREILVATDVA---------------------------------ARGLDIP 363
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDS 443
+V V+N++MPQ++ Y+HR+GRT RA +G ++S V+ +++I+ I++ +G + E
Sbjct: 364 SVDVVLNYDMPQDSKTYIHRVGRTARAGKSGHAISFVTQYDVEIWMRIEAALGKKQEEYQ 423
Query: 444 NI 445
+
Sbjct: 424 TV 425
>gi|333908483|ref|YP_004482069.1| DEAD/DEAH box helicase domain-containing protein [Marinomonas
posidonica IVIA-Po-181]
gi|333478489|gb|AEF55150.1| DEAD/DEAH box helicase domain protein [Marinomonas posidonica
IVIA-Po-181]
Length = 445
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 131/410 (31%), Positives = 212/410 (51%), Gaps = 49/410 (11%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
FE+ G D R++ ++ G + T IQ +IP + G+D++A +KTGSGKT AY+LP LHR
Sbjct: 3 FEDFGFDNRILKSIGHLGFDEATEIQARAIPEAMAGRDLLASSKTGSGKTLAYILPALHR 62
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
++ + + S+ P ++LVPTREL +QV+ ++ L+ + L V + +D
Sbjct: 63 VYKKKAL-SRRDPRVVILVPTRELAKQVFGQLRLLLAGSR----LTSVLILGGENFNDQH 117
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL-S 206
+L P ++ATPG + L Q + + L++L+LDEAD +L G+ D ++A+ +
Sbjct: 118 KSLQKDPHFIVATPGRLVDHLK----QRHLYLEGLELLILDEADRMLDLGFADAMRAINN 173
Query: 207 AVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
A R Q L SAT ++DV+++ +L P + +G DE K++QQ + C
Sbjct: 174 AANHRQRQTLFFSATLDNTDVNEMASELLKEPSRVA---IGQGYDE--HKDIQQHVLLCD 228
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
D +L L E K+A+IFT T RL + ++G+ + LN +L Q++R
Sbjct: 229 HLDHKQALLKHLLSEQSIKQAIIFTATKADTVRLAELVAEWGMTTQALNGDLSQSARNKT 288
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
+E F G F+ L++TD RG+D +V
Sbjct: 289 MESFAKGQFNVLVSTDLAS---------------------------------RGLDIASV 315
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
V NF++P+ A +VHR GRTGRA G + SLV P + F+ I++F+
Sbjct: 316 SHVFNFDLPKQAEEFVHRTGRTGRAGFKGDAYSLVGPKDWLSFKAIEAFL 365
>gi|332293596|ref|YP_004432205.1| DEAD/DEAH box helicase domain protein [Krokinobacter sp. 4H-3-7-5]
gi|332171682|gb|AEE20937.1| DEAD/DEAH box helicase domain protein [Krokinobacter sp. 4H-3-7-5]
Length = 427
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 144/417 (34%), Positives = 212/417 (50%), Gaps = 60/417 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF+ LGL L+ A+++KG P+ IQQ +IP++L+GKDV+A A+TG+GKT + LP++H
Sbjct: 2 SFKSLGLSDALLKAVSEKGYTTPSPIQQKAIPVVLQGKDVLASAQTGTGKTAGFTLPMIH 61
Query: 87 RLFNESSPK-SKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASD 145
RL N +PK + ALVL PTREL Q+ V+ E K V +K + + + +
Sbjct: 62 RLIN--NPKQGRRKIRALVLTPTRELAAQIQENVL---EYSK-YVDIKSMVIFGGVNQNP 115
Query: 146 LRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL 205
L DI++ATPG + + G+L S SD ++ LVLDEAD +L G+ D+K +
Sbjct: 116 QVRTLRQGVDILVATPGRLLDLQNQGLL---SLSD-VEFLVLDEADRMLDMGFIHDIKKV 171
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQF 260
++P Q LL SAT ++D+ K IL NP ++ E P+N V Q
Sbjct: 172 LKMVPAKRQNLLFSATFNTDIKKFASSILTNPVLV----------EATPENTTAEKVDQK 221
Query: 261 WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 320
+ K ++ ++ E + L+FT T A RL LEK GI SA ++ QN
Sbjct: 222 SYRVDKSRKTEMLIKFIR-EGNWDQVLVFTRTKHGANRLSQKLEKDGISSAAIHGNKTQN 280
Query: 321 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 380
+R+ L F +G L+ATD RG+
Sbjct: 281 ARVKALAGFKSGKVRVLVATDIA---------------------------------ARGL 307
Query: 381 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
D + VIN+E+P YVHRIGRTGRA +G ++SLV DE+ I+ +G+
Sbjct: 308 DIPLLPYVINYELPNVPEDYVHRIGRTGRAGASGQAISLVGVDEVDYVRGIEKLLGE 364
>gi|302795308|ref|XP_002979417.1| hypothetical protein SELMODRAFT_110816 [Selaginella moellendorffii]
gi|300152665|gb|EFJ19306.1| hypothetical protein SELMODRAFT_110816 [Selaginella moellendorffii]
Length = 749
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 176/579 (30%), Positives = 265/579 (45%), Gaps = 73/579 (12%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF EL + L+ A + G ++PT IQ A IPL L G+D+ A TGSGKT A+ LP+L
Sbjct: 118 SFIELNVSRPLLRACDALGYRQPTPIQAACIPLALAGRDICGSAVTGSGKTAAFALPILE 177
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
RL P+ A L++ PTREL Q++S + L + + L V L+S + L
Sbjct: 178 RLL--FRPRRIPAIRVLIITPTRELAVQLHSMIEKLAQFTDIRCSLVVGGLSSKVQEVAL 235
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
R PDIV+ATPG M L QS + L ILVLDEAD LL G+ +++ L
Sbjct: 236 RTH----PDIVVATPGRMIDHLRN--TQSVGL-EELAILVLDEADRLLELGFREEIHELV 288
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL-PEV---GDVKDEVIPKNVQQFWI 262
+ P Q +L SAT + +V +L KL L +P L+ P + +EVI
Sbjct: 289 KLCPSRRQTMLFSATMTDEVSELIKLSLKSPVRLSADPSTERPSTLTEEVIRIR------ 342
Query: 263 SCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 322
+ E DK +L+L L + K +IF+ T A RLK+ G+KSA L+ L Q R
Sbjct: 343 AGHEGDKEAIVLSLCSRSL-KSKTIIFSGTKVEAHRLKILFGLSGLKSAELHGNLTQAQR 401
Query: 323 LHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDF 382
L LE F D+LIATD RG+D
Sbjct: 402 LEALEAFRKQEVDFLIATD---------------------------------VAARGLDI 428
Query: 383 KNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENED 442
V +VIN E P+ YVHR+GRT RA G SV+L++ + + + + G +
Sbjct: 429 IGVESVINLECPKEIKTYVHRVGRTARAGRHGRSVTLMTEQDRLLLKAVAKRAGSKLQKR 488
Query: 443 SNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNP 502
++A ++ S R R E + + + +I +E + LR KA E N
Sbjct: 489 --------VVAATSIASWRERIEKMEEDLVQILQQEREEKFLR---------KAEMEAN- 530
Query: 503 KDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRR 562
K +++ ++ ++ +P + + D AK A L + A+ Q ++
Sbjct: 531 KAQNMMDYEAEIFARPKKTWFQSQQDKTRIAKVSPASYGPALKKKAISVDEGEELQ--KK 588
Query: 563 KFRKSDPLKSFSAEPTKRAGKGRMKREGRNGDDTGKHKK 601
+ RK++ K+ + +R R E +D +H+K
Sbjct: 589 EKRKAETEKALPRKKRRRLEAARETAEEGADEDENQHRK 627
>gi|343510511|ref|ZP_08747734.1| DEAD-box ATP dependent DNA helicase [Vibrio scophthalmi LMG 19158]
gi|342801480|gb|EGU36940.1| DEAD-box ATP dependent DNA helicase [Vibrio scophthalmi LMG 19158]
Length = 444
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 133/413 (32%), Positives = 211/413 (51%), Gaps = 49/413 (11%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F++LGLD RL+ LN +KPT IQ+ +IP+ + GKD++A +KTGSGKT A++LP+LH+
Sbjct: 3 FKDLGLDNRLLKTLNHYAFKKPTDIQKQAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHK 62
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+ +K P L+L PTREL +QVY E+ A++ G + + +D +
Sbjct: 63 SLKSKAFSAK-DPRGLILAPTRELAKQVYGELRAML----GGLSYDATLVVGGENFNDQQ 117
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS- 206
AL P ++ATPG + L L F D L+ L+LDEAD +L G+ +L+ +
Sbjct: 118 KALRRYPKFIVATPGRLADHLEHKSL----FLDGLETLILDEADRMLDLGFAPELRRIHK 173
Query: 207 AVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
A R Q L+ SAT ++++++ + +P + + V ++ Q+F++ C
Sbjct: 174 AAKHRRRQTLMFSATLDHAEMNEIAAEMQDSPKRIAI----GVSNQEHQDITQKFYL-CD 228
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
D IL + E ++ +IFT T RL L L + +K+ L+ L Q R I
Sbjct: 229 HLDHKEAILDRVLEEANYRQLIIFTATRADTERLTLKLNEQKLKAVALSGGLTQTQRNTI 288
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
+ +F +F L+ TD RG+D NV
Sbjct: 289 MSQFERAVFKILVTTDIAS---------------------------------RGLDIANV 315
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD 438
V+NF+MP++ YVHR+GRTGRA N G +VSLV P + F+ +++++ D
Sbjct: 316 THVVNFDMPKHTEEYVHRVGRTGRAGNKGDAVSLVGPKDWDSFKRVEAYLHQD 368
>gi|212555159|gb|ACJ27613.1| Helicase, DEAD box [Shewanella piezotolerans WP3]
Length = 482
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 147/432 (34%), Positives = 217/432 (50%), Gaps = 68/432 (15%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF LGL +++ A+ KG P+ IQ +IP +LEGKDV+A A+TG+GKT + LPLL
Sbjct: 2 SFASLGLSAQILKAVANKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLE 61
Query: 87 RLFNESSPKSKLAPA----ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMP 142
L K APA ALVL PTREL QV V E+ + LK + +
Sbjct: 62 LL-----SKGNKAPAKQVRALVLTPTRELAAQVGESV----EIYGKNLPLKSAVIFGGVG 112
Query: 143 ASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 202
+ L+ DI++ATPG + L ++ +FS L++LVLDEAD +L G+ D+
Sbjct: 113 IGPQISKLSRGVDILVATPG---RLLDLYNQRAVNFSQ-LEVLVLDEADRMLDMGFIHDI 168
Query: 203 KALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----V 257
K + A++P Q L+ SAT S D+ KL K +++NP V+ V P+N V
Sbjct: 169 KKILAILPAKRQNLMFSATFSDDIRKLAKGLVNNP----------VEISVTPRNATANTV 218
Query: 258 QQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAEL 317
+Q WI ++ + +L L + ++ L+F+ T A RL L+ GI +A ++
Sbjct: 219 KQ-WICPVDKGQKASVLVKLIKQHDWQQVLVFSRTKHGANRLAKNLDAKGITAAAIHGNK 277
Query: 318 PQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVV 377
Q +R L EF +G L+ATD
Sbjct: 278 SQGARTKALAEFKSGDVRVLVATDI---------------------------------AA 304
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RG+D + V+NF++P YVHRIGRTGRA TG +VSLVS +E+K+ +I+ +
Sbjct: 305 RGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSDEEIKLLRDIELLI-- 362
Query: 438 DENEDSNIIAPF 449
+N + +I F
Sbjct: 363 KQNLERRVIEGF 374
>gi|327295054|ref|XP_003232222.1| ATP-dependent RNA helicase DRS1 [Trichophyton rubrum CBS 118892]
gi|326465394|gb|EGD90847.1| ATP-dependent RNA helicase DRS1 [Trichophyton rubrum CBS 118892]
Length = 813
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 137/412 (33%), Positives = 203/412 (49%), Gaps = 54/412 (13%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF+ L L ++ L G PT IQ+ +IP+ L GKDVV A TGSGKT A+++P+L
Sbjct: 297 SFQNLSLSRPILRGLASVGFSTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIVPILE 356
Query: 87 RLFNESS--PKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
RL P S++A +L+PTREL Q Y+ L + QL
Sbjct: 357 RLLYRPRKVPTSRVA----ILMPTRELAVQCYNVATKLATFT----DITFCQLVGGFSLR 408
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLK 203
+ L PD++IATPG + S SF+ D+L+ILVLDEAD +L G+ ++L
Sbjct: 409 EQENILKKRPDVIIATPGRFIDHMRN----SASFTVDTLEILVLDEADRMLEDGFAEELN 464
Query: 204 ALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-WI 262
+ IP+ Q +L SAT +S VDKL +L L+ P L + D K + + VQ+F +
Sbjct: 465 EILTTIPKSRQTMLFSATMTSSVDKLIRLGLNKPVRLMV----DSKKQTVGTLVQEFVRL 520
Query: 263 SCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 322
DK L L L + + ++F A R+++ G+K+A L+ + Q R
Sbjct: 521 RPGREDKRLGYLMFLCKTVYTNRVIVFFRQKKEAHRVRIIFGLMGLKAAELHGSMSQEQR 580
Query: 323 LHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDF 382
+ +E+F YL+ATD L S RG+D
Sbjct: 581 IKSVEDFRDAKVSYLLATD----------------------------LAS-----RGLDI 607
Query: 383 KNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS-PDEMKIFEEIKS 433
K V TVIN+E PQ+ Y+HR+GRT RA +G + ++ + PD + E +K+
Sbjct: 608 KGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKEAVKA 659
>gi|224089124|ref|XP_002308641.1| predicted protein [Populus trichocarpa]
gi|222854617|gb|EEE92164.1| predicted protein [Populus trichocarpa]
Length = 440
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 146/428 (34%), Positives = 213/428 (49%), Gaps = 62/428 (14%)
Query: 15 AEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGS 74
AEE E E K+F +LG+ +LV A + G + PT IQ +IP LEGKD++A A+TGS
Sbjct: 2 AEETE---EAVKTFADLGICEQLVEACERLGWKNPTKIQVEAIPHALEGKDLIALAQTGS 58
Query: 75 GKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKV 134
GKT A+ LP L L ++S S A VL PTREL Q+ + AL + L+
Sbjct: 59 GKTAAFALPTLQALL-QASVTSVPVFYACVLSPTRELAIQIAEQFEAL----GSDIGLRC 113
Query: 135 VQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLL 193
L + ALA P IV+ TPG + LS +K FS +LK L+LDEAD L
Sbjct: 114 AVLVGGVDMGLQTIALAKRPHIVVGTPGRLLDHLS----NTKGFSLRTLKYLILDEADRL 169
Query: 194 LSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVI 253
L+ +E L + VI R + L SAT + V KL++ L NP VK EV
Sbjct: 170 LNEEFEKSLDEILTVISRDRKTYLFSATMTKKVRKLQRACLRNP----------VKIEVA 219
Query: 254 PK-----NVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGI 308
K ++Q + C + K Y++ L L+ ++FT T D L L L G+
Sbjct: 220 SKYSVVETLRQQLLFCPAKYKECYLVHALTLK-SGASTMVFTRTCDATHFLALVLRNLGL 278
Query: 309 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA 368
++ +N + Q+ RL L +F AG + LI TD
Sbjct: 279 RAIPINGHMSQSKRLGALNKFKAGECNILICTDVAS------------------------ 314
Query: 369 KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF 428
RG+D +V V+N+++P N+ Y+HR+GRT RA +G ++SLV+ +E+ F
Sbjct: 315 ---------RGLDIPSVDMVVNYDIPTNSKDYIHRVGRTARAGRSGLAISLVNQNEIGWF 365
Query: 429 EEIKSFVG 436
++I++ +G
Sbjct: 366 KQIENLIG 373
>gi|335420259|ref|ZP_08551297.1| DEAD box family ATP-dependent RNA helicase [Salinisphaera
shabanensis E1L3A]
gi|334894618|gb|EGM32803.1| DEAD box family ATP-dependent RNA helicase [Salinisphaera
shabanensis E1L3A]
Length = 437
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 143/413 (34%), Positives = 202/413 (48%), Gaps = 59/413 (14%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F++LGL L+ A+ G +PT IQ +IP +L+G+DV+A A+TG+GKT A+ LPLLH+
Sbjct: 3 FDQLGLAPSLLEAVAAAGYSEPTPIQAKAIPAVLDGQDVLAAAQTGTGKTAAFTLPLLHK 62
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
L + K P LVL PTREL QV V + G ++ V+ +
Sbjct: 63 LGDRQEKK----PRVLVLAPTRELAAQVNESVRTYGK--SGAIRSTVI--FGGVGYQPQI 114
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
A DIV+ATPG + L G + +++ LVLDEAD +L G+ D+K +
Sbjct: 115 AQFKKGVDIVVATPGRLLDLLQEG----HADLSNIQTLVLDEADRMLDMGFIHDIKRVLK 170
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWIS---- 263
+P Q LL SAT S D+ KL +LH P V+ +V P+N I
Sbjct: 171 YVPEKRQTLLFSATFSKDIRKLASSLLHKP----------VEIDVAPRNATADRIDQKVV 220
Query: 264 CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
E+ + +L+ L E + L+F T A RL LE G+ SA L+ QN+R
Sbjct: 221 MVEKPRKRAVLSHLIKENGWHQVLVFARTKHGANRLCKQLESDGLPSAALHGNKSQNART 280
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
LE F G L+ATD RGID +
Sbjct: 281 KALEGFKDGKIQVLVATDIA---------------------------------ARGIDIE 307
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
++ V+N+E+P + YVHRIGRTGRA G +VSLV PDE K+ ++I+ +G
Sbjct: 308 SLPHVVNYELPNVSEDYVHRIGRTGRAGEAGEAVSLVGPDERKLLKDIEKLIG 360
>gi|224825987|ref|ZP_03699090.1| DEAD/DEAH box helicase domain protein [Pseudogulbenkiania
ferrooxidans 2002]
gi|224601624|gb|EEG07804.1| DEAD/DEAH box helicase domain protein [Pseudogulbenkiania
ferrooxidans 2002]
Length = 562
Score = 196 bits (499), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 144/416 (34%), Positives = 207/416 (49%), Gaps = 52/416 (12%)
Query: 25 EKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPL 84
E F +LGL L+ A+ + G PT IQ +IP +++G D++A A+TG+GKT + LPL
Sbjct: 3 EIKFTDLGLSEPLLRAVAETGYTTPTPIQAQAIPQVIKGGDLLAAAQTGTGKTAGFTLPL 62
Query: 85 LHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELC--KGQVQLKVVQLTSSMP 142
LHRL + K P ALVL PTREL QV V + K V V + +
Sbjct: 63 LHRL-GPAPTHLKGRPRALVLTPTRELAAQVEESVRTYGKYLPHKSMVMFGGVGINPQI- 120
Query: 143 ASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 202
AAL P DI++ATPG + L ++ S ++ILVLDEAD +L G+ D+
Sbjct: 121 -----AALRKPLDILVATPG---RLLDHAGQKTVDLS-GVEILVLDEADRMLDMGFIHDI 171
Query: 203 KALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWI 262
K + A++P Q LL SAT S ++ L +L+NP ++ + + +E++ + V
Sbjct: 172 KKVLALLPAKRQNLLFSATFSDEIKVLADRLLNNPQLVEVARR-NTANELVEQKVH---- 226
Query: 263 SCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 322
+RDK +LT L + + L+FT T A RL L+K GI +A ++ QN+R
Sbjct: 227 -LVDRDKKTELLTHLISQGDWHQVLVFTRTKHGANRLAEKLDKSGITAAAIHGNKSQNAR 285
Query: 323 LHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDF 382
L +F A L+ATD RG+D
Sbjct: 286 TKALADFKANTLQVLVATDI---------------------------------AARGLDI 312
Query: 383 KNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD 438
+ V+NFE+P YVHRIGRTGRA N G +VSLV DE K ++I+ + D
Sbjct: 313 DQLPHVVNFELPNVPEDYVHRIGRTGRAGNEGEAVSLVCVDEFKFLKDIEKLIKKD 368
>gi|386288620|ref|ZP_10065760.1| ATP-dependent RNA helicase RhlB [gamma proteobacterium BDW918]
gi|385278175|gb|EIF42147.1| ATP-dependent RNA helicase RhlB [gamma proteobacterium BDW918]
Length = 447
Score = 196 bits (499), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 145/446 (32%), Positives = 216/446 (48%), Gaps = 64/446 (14%)
Query: 2 GKSKEIPSKEVKQAEEEEAEAEEEKS-FEELGLDLRLVHALNKKGIQKPTLIQQASIPLI 60
G K+ P++ ++ EE K+ F +LGLDLRL+H + G + + IQ S+P
Sbjct: 41 GAEKQKPAEPEWTLDQFSVPTEEGKTRFHDLGLDLRLMHGIADTGFKYCSPIQAVSLPHT 100
Query: 61 LEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLA--PAALVLVPTRELCQQVYSE 118
L G DV+ +A+TG+GKT A+L+ + + L N + + A P ALV+ PTREL Q+ +
Sbjct: 101 LRGNDVIGKAQTGTGKTAAFLITIFNDLLNNPIEEERFAGEPRALVIAPTRELVVQIGED 160
Query: 119 VMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSF 178
AL + C L VV L M + L G DIV+ATPG + + +
Sbjct: 161 ARALGKYCG----LNVVTLIGGMDYQKQQDKLKGMVDIVVATPGRLLDFEG----RKDLY 212
Query: 179 SDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGC--QCLLMSATSSSDVDKLKKLILHN 236
D ++ILV+DEAD +L G+ +K + P Q LL SAT + D+ +L +
Sbjct: 213 LDQIEILVIDEADRMLDMGFIPQVKRIVRATPSTNHRQTLLFSATFTDDIMRLTEQWTKE 272
Query: 237 PYILTLPEVGDVKDEVIPKNV------QQFWISCSERDKLLYILTLLKLELVQKKALIFT 290
P VK E+ P++V Q+ ++ S+ DK +L +++ E +IF
Sbjct: 273 P----------VKIEIEPESVATDTVDQKVYLVESQ-DKYRLLLNIVREEHA-TSVIIFV 320
Query: 291 NTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQ 350
N D RL ++K GI+ IL+ E+PQN R L++F G D L+ATD
Sbjct: 321 NRRDETRRLFEKMQKAGIRCGILSGEIPQNKRSRTLQQFKDGEIDCLVATDVAG------ 374
Query: 351 SDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRA 410
RGI V VIN+ +P++A YVHRIGRTGRA
Sbjct: 375 ---------------------------RGIHVNGVSHVINYVLPEDAEDYVHRIGRTGRA 407
Query: 411 YNTGASVSLVSPDEMKIFEEIKSFVG 436
TG S+S D+ + I+ +G
Sbjct: 408 GATGTSISFACEDDAFLLPNIEEALG 433
>gi|242778101|ref|XP_002479171.1| ATP-dependent RNA helicase (Drs1), putative [Talaromyces stipitatus
ATCC 10500]
gi|218722790|gb|EED22208.1| ATP-dependent RNA helicase (Drs1), putative [Talaromyces stipitatus
ATCC 10500]
Length = 833
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 135/405 (33%), Positives = 197/405 (48%), Gaps = 53/405 (13%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF+ L ++ L G KPT IQ+ +IP+ L GKDVV A TGSGKT A+++P+L
Sbjct: 312 SFQNYNLSRPILRGLAAVGFTKPTPIQRKAIPVALLGKDVVGGAVTGSGKTGAFIIPILE 371
Query: 87 RLFNESS--PKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
RL P S++A +L+PTREL Q Y+ L + QL
Sbjct: 372 RLLYRPRKVPTSRVA----ILMPTRELAVQCYNVATKLATYT----DITFCQLIGGFSLR 423
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLK 203
+ L PDI+IATPG + S SF+ D+L+ILVLDEAD +L G+ D+L
Sbjct: 424 EQENVLKKRPDIIIATPGRFIDHMRN----SASFTVDTLEILVLDEADRMLEDGFADELN 479
Query: 204 ALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-WI 262
+ IP+ Q +L SAT + VDKL ++ L+ P L + D K + VQ+F +
Sbjct: 480 EILTTIPKSRQTMLFSATMTDSVDKLIRVGLNRPVRLMV----DAKKQTAGTLVQEFVRL 535
Query: 263 SCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 322
DK L L L ++ + +IF A R+++ FG+K+A L+ + Q R
Sbjct: 536 RPGREDKRLASLIHLCQQVYAARVIIFFRQKKEAHRVRVIFGLFGLKAAELHGSMSQEQR 595
Query: 323 LHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDF 382
+ +E+F G +L+ATD RG+D
Sbjct: 596 IKSVEDFRDGKVAFLLATDVAS---------------------------------RGLDI 622
Query: 383 KNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 427
K V TVIN+E PQ Y+HR+GRT RA +G + +L + + K+
Sbjct: 623 KGVETVINYEAPQTHEIYLHRVGRTARAGRSGRACTLAADPDRKV 667
>gi|67517117|ref|XP_658442.1| hypothetical protein AN0838.2 [Aspergillus nidulans FGSC A4]
gi|40746512|gb|EAA65668.1| hypothetical protein AN0838.2 [Aspergillus nidulans FGSC A4]
Length = 1676
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 150/511 (29%), Positives = 246/511 (48%), Gaps = 70/511 (13%)
Query: 13 KQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKT 72
++ +E+ A ++SF+E L ++ L PT IQQ +IP+ L GKD+V A T
Sbjct: 777 EKTDEDAATNSAKRSFQEFNLSRPILRGLAAVNFTNPTPIQQKTIPVALLGKDIVGSAVT 836
Query: 73 GSGKTFAYLLPLLHRLF--NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQV 130
GSGKT A+++P+L RL P S++A +L+PTREL Q Y+ L
Sbjct: 837 GSGKTAAFVVPILERLLFRPRKVPTSRVA----ILMPTRELAVQCYNVATKLATY----T 888
Query: 131 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDE 189
+ QL + L PD++IATPG + S SF+ D+L+ILVLDE
Sbjct: 889 DITFCQLVGGFSLREQENVLKKRPDVIIATPGRFIDHMR----NSASFTVDTLEILVLDE 944
Query: 190 ADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVK 249
AD +L G+ D+L + IP+ Q +L SAT + VDKL ++ L+ P L + D K
Sbjct: 945 ADRMLEDGFADELNEILTTIPKSRQTMLFSATMTDSVDKLIRVGLNRPVRLMV----DTK 1000
Query: 250 DEVIPKNVQQF--WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFG 307
VQ+F E +L Y+L L K E+ + ++F A R+++ G
Sbjct: 1001 KNTAVTLVQEFVRLRPGREDKRLGYLLHLCK-EVYTGRVIVFFRQKKEAHRVRIVFGLLG 1059
Query: 308 IKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPK 367
+K+A L+ + Q R+ +E F G ++L+ATD
Sbjct: 1060 LKAAELHGSMSQEQRIKSVESFRDGNVNFLLATDLAS----------------------- 1096
Query: 368 AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 427
RG+D K V TVIN+E PQ+ YVHR+GRT RA +G + ++ + + K+
Sbjct: 1097 ----------RGLDIKGVETVINYEAPQSHEIYVHRVGRTARAGRSGRACTIAAEPDRKV 1146
Query: 428 FEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNE 487
+K+ V + + + I++ ++ + + +A+D+ + + + L E
Sbjct: 1147 ---VKAAVKAGKAQGAKIVS--RVVDPSVADDWASKAKDMEEEIDAV---------LEEE 1192
Query: 488 ILNSEKLKAHFEVNPKDLDLLKHDKDLSKKP 518
L + +A +V K +L+KH+ ++ +P
Sbjct: 1193 KLEKQLAQAEMQVT-KGENLIKHEAEIKSRP 1222
>gi|378728301|gb|EHY54760.1| adenosinetriphosphatase [Exophiala dermatitidis NIH/UT8656]
Length = 813
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 136/412 (33%), Positives = 203/412 (49%), Gaps = 54/412 (13%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF++ L ++ AL PT IQ +IP+ L+G DVV A TGSGKT A+LLP+L
Sbjct: 287 SFQQFSLSRPILKALAALSFTAPTPIQARAIPVALQGLDVVGSAVTGSGKTAAFLLPILE 346
Query: 87 RLFNESS--PKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
RL P +++A +L+PTREL Q Y+ AL + Q+ P
Sbjct: 347 RLLYRPRKVPTTRVA----ILMPTRELAVQCYNVATALARFT----DITFAQVVGGFPLR 398
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSF-SDSLKILVLDEADLLLSYGYEDDLK 203
+ A L PD+VIATPG + S SF ++++ILVLDEAD +L G+ED+L
Sbjct: 399 EQEAILKKRPDVVIATPGRFIDHMRN----SASFVVENIEILVLDEADRMLETGFEDELN 454
Query: 204 ALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWIS 263
+ IP+G Q +L SAT + VDKL ++ ++ P L++ D K + VQ+F
Sbjct: 455 EILKTIPKGRQTMLFSATMTDSVDKLVRVGMNRPVRLSV----DAKKSTVSGLVQEFVRL 510
Query: 264 CSERDKL-LYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 322
R+ L L L +L ++ +IF A R+++ G+K+ L+ + Q R
Sbjct: 511 RPGRENLRLATLCVLCKNFFTERTIIFFRQKKEAHRVRIVFGLLGLKAGELHGSMSQEQR 570
Query: 323 LHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDF 382
+ + F G +L+ATD L S RG+D
Sbjct: 571 ISAVNAFREGKTTHLLATD----------------------------LAS-----RGLDI 597
Query: 383 KNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS-PDEMKIFEEIKS 433
KNV TV+N+E PQ Y+HR+GRT RA +G + ++ + PD + +KS
Sbjct: 598 KNVMTVVNYEAPQTHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVRAAVKS 649
>gi|40063513|gb|AAR38313.1| ATP-dependent RNA helicase RhlE [uncultured marine bacterium 581]
Length = 446
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 139/414 (33%), Positives = 209/414 (50%), Gaps = 58/414 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF LGL L+ A+ +G P+ IQ +IP +LEG+DV+A A+TG+GKT + LPLLH
Sbjct: 2 SFSTLGLSESLLKAVADEGYTTPSPIQAQAIPAVLEGRDVMAAAQTGTGKTAGFTLPLLH 61
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
L S K+ ALVL PTREL QV V ++ + L+ + + +
Sbjct: 62 GLSKGQSAKANQV-RALVLTPTRELAAQVAESV----DIYGKYLNLRSAVVFGGVKINPQ 116
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
L DI+IATPG + L + SF L++L+LDEAD +L G+ D++ +
Sbjct: 117 MMRLRKGVDILIATPG---RLLDLYQQNAMSF-QKLEVLILDEADRMLDMGFIHDIRRIM 172
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQFW 261
+P Q L+ SAT S D+ L K I++NP V+ V P+N V Q W
Sbjct: 173 KALPNKRQNLMFSATFSEDIRDLAKTIVNNP----------VEISVTPRNSTAVSVTQ-W 221
Query: 262 ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 321
I ++++ ++L L + ++ L+F+ T A RL FLEK I++A ++ Q +
Sbjct: 222 IHPVDKNQKRHLLVELINQHNWEQVLVFSRTKRGANRLAEFLEKKDIQAAAIHGNKSQGA 281
Query: 322 RLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGID 381
R L EF +G L+ATD RG+D
Sbjct: 282 RTRALSEFKSGKLRVLVATDI---------------------------------AARGLD 308
Query: 382 FKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ + V+N ++P+ A YVHRIGRTGRA TG ++SLVS DE ++ ++I+ +
Sbjct: 309 IEQLPQVVNLDLPEVAQDYVHRIGRTGRAGATGQAISLVSADEAQLLQDIERLI 362
>gi|212533429|ref|XP_002146871.1| ATP-dependent RNA helicase (Drs1), putative [Talaromyces marneffei
ATCC 18224]
gi|210072235|gb|EEA26324.1| ATP-dependent RNA helicase (Drs1), putative [Talaromyces marneffei
ATCC 18224]
Length = 826
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 139/431 (32%), Positives = 208/431 (48%), Gaps = 53/431 (12%)
Query: 1 MGKSKEIPSKEVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLI 60
+ K K + E + E++A+ SF+ L ++ L G KPT IQ+ +IP+
Sbjct: 279 IAKRKAFFAPEEPASAEKDADDAANGSFQNYNLSRPILRGLAAVGFTKPTPIQRKAIPVA 338
Query: 61 LEGKDVVARAKTGSGKTFAYLLPLLHRLF--NESSPKSKLAPAALVLVPTRELCQQVYSE 118
L GKDVV A TGSGKT A+++P+L RL P S++A +L+PTREL Q ++
Sbjct: 339 LLGKDVVGGAVTGSGKTGAFIIPILERLLYRQRKVPTSRVA----ILMPTRELAVQCFNV 394
Query: 119 VMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSF 178
L + QL + L PDI+IATPG + S SF
Sbjct: 395 ATKLATYT----DITFCQLIGGFSLREQENILKKRPDIIIATPGRFIDHMRN----SSSF 446
Query: 179 S-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNP 237
+ D+L+ILVLDEAD +L G+ D+L + IP+ Q +L SAT + VDKL ++ L+ P
Sbjct: 447 TVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTMLFSATMTDSVDKLIRVGLNRP 506
Query: 238 YILTLPEVGDVKDEVIPKNVQQF-WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMA 296
L + D K + VQ+F + DK L L L ++ + +IF A
Sbjct: 507 VRLMV----DAKKQTAGTLVQEFVRLRPGREDKRLASLIHLCQQVYTSRVIIFFRQKKEA 562
Query: 297 FRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGH 356
R+++ FG+K+A L+ + Q R+ +E+F G +L+ATD
Sbjct: 563 HRVRVIFGLFGLKAAELHGSMSQEQRIKSVEDFRDGKVAFLLATDVAS------------ 610
Query: 357 VDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGAS 416
RG+D K V TVIN+E PQ Y+HR+GRT RA +G +
Sbjct: 611 ---------------------RGLDIKGVETVINYEAPQTHEIYLHRVGRTARAGRSGRA 649
Query: 417 VSLVSPDEMKI 427
+L + + K+
Sbjct: 650 CTLAADPDRKV 660
>gi|240274680|gb|EER38196.1| ATP-dependent RNA helicase drs1 [Ajellomyces capsulatus H143]
Length = 828
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 151/511 (29%), Positives = 241/511 (47%), Gaps = 70/511 (13%)
Query: 15 AEEEEAEAEEE----KSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARA 70
A EE+A A + KSF+ L ++ L G PT IQ+ +IP+ L GKDVV A
Sbjct: 289 APEEKASANGDLKSAKSFQAFSLSRPILRGLTFVGFTTPTPIQRKTIPVALLGKDVVGGA 348
Query: 71 KTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQV 130
TGSGKT A+++P+L RL P+ ++L+PTREL Q Y+ L
Sbjct: 349 VTGSGKTGAFIIPILERLL--YRPRKVPTSRVVILMPTRELAVQCYNVATKLATFT---- 402
Query: 131 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDE 189
+ QL + L PD++IATPG + S SF+ D+L+ILVLDE
Sbjct: 403 DITFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMR----NSASFTVDTLEILVLDE 458
Query: 190 ADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVK 249
AD +L G+ D+L + IP+ Q +L SAT +++VDKL ++ L+ P L + D K
Sbjct: 459 ADRMLEDGFADELNEILTTIPKSRQTMLFSATMTNNVDKLIRVGLNRPVRLMV----DAK 514
Query: 250 DEVIPKNVQQF--WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFG 307
+ + +Q+F E +L Y++ L K + + + ++F + A R+++ G
Sbjct: 515 KQTVGTLIQEFVRLRPGREEKRLGYLIVLCK-NIYKDRVIVFFRSKKEAHRVRIIFGLLG 573
Query: 308 IKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPK 367
+K L+ + Q R+ +E F G +L+ATD
Sbjct: 574 LKVTELHGSMSQEQRIKSVEGFRDGKVSFLLATDVAS----------------------- 610
Query: 368 AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 427
RG+D K V TVIN+E PQ+ Y+HR+GRT RA +G + +L + + K+
Sbjct: 611 ----------RGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKV 660
Query: 428 FEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNE 487
+K+ V + + I++ A E+ ++ A+ + LR E
Sbjct: 661 ---VKAAVKTGRAQGAKIVSRLIETA----EADKWAAKVEEMQEEVQEI-------LREE 706
Query: 488 ILNSEKLKAHFEVNPKDLDLLKHDKDLSKKP 518
+ +A EV + +LL HDK++ +P
Sbjct: 707 KEEKQLAQAEMEVT-RGSNLLNHDKEIMSRP 736
>gi|298571703|gb|ADI87855.1| hypothetical protein AKSOIL_0347 [uncultured bacterium Ak20-3]
Length = 527
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 138/429 (32%), Positives = 220/429 (51%), Gaps = 54/429 (12%)
Query: 12 VKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAK 71
+KQA +E+ ++E +F++ D++L + +G PT IQ +IP++LEGKD++A A+
Sbjct: 19 LKQANQEQLDSE--ANFKDFPFDMKLQQVIADEGFSIPTPIQVRAIPIVLEGKDIIACAQ 76
Query: 72 TGSGKTFAYLLPLLHRLFNESSPKSKLA--PAALVLVPTRELCQQVYSEVMALIELCKGQ 129
TG+GKT A+ LP+LH+L ++ + + + P LVLVPTREL QV E A G
Sbjct: 77 TGTGKTAAFALPILHKLVQDAQTEKQRSYHPKVLVLVPTRELALQV-QETFAAFGHNLGV 135
Query: 130 VQLKVVQLTS-SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLD 188
+ ++ S +LR P +V+ATPG + L G + S+ L+LD
Sbjct: 136 NSIAIIGGVSVGQQMVNLRRR---SPQVVVATPGRLLDILEQGGINLS----SIHTLILD 188
Query: 189 EADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNP-YILTLPEVGD 247
EAD +L G+ D K + IP+ Q L+ SAT SS+V+ L K I++ P +I P+
Sbjct: 189 EADRMLDMGFIPDTKRIVKAIPKERQSLMFSATISSEVNALSKQIMNTPVHISVAPKRAS 248
Query: 248 VKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFG 307
+ ++Q S +K + LL+ + + + +IFT T A +L L + G
Sbjct: 249 A------EGIEQLLYSVPGDNKRALLFHLLENDEM-NRVIIFTRTKFGASKLSDSLIREG 301
Query: 308 IKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPK 367
I+S ++++ Q +R + E F +G L+ATD
Sbjct: 302 IRSKVIHSGKSQAARQSVWEHFRSGKLRVLVATD-------------------------- 335
Query: 368 AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 427
L S RGID + V+N+++P A Y+HRIGRTGRA TG ++S SPD+ ++
Sbjct: 336 --LAS-----RGIDVDGISHVVNYDLPDCAETYIHRIGRTGRANKTGIALSFCSPDQRRL 388
Query: 428 FEEIKSFVG 436
I+ +G
Sbjct: 389 LTAIERHLG 397
>gi|444428260|ref|ZP_21223602.1| ATP-dependent RNA helicase [Vibrio campbellii CAIM 519 = NBRC
15631]
gi|444238494|gb|ELU50097.1| ATP-dependent RNA helicase [Vibrio campbellii CAIM 519 = NBRC
15631]
Length = 447
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 138/420 (32%), Positives = 210/420 (50%), Gaps = 49/420 (11%)
Query: 23 EEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLL 82
E F++LGLD RL+ L +K T IQQ +IP+ + GKD++A +KTGSGKT A++L
Sbjct: 2 ENTLQFKDLGLDNRLLKNLKHYDFKKATDIQQQAIPVAIAGKDLLASSKTGSGKTLAFVL 61
Query: 83 PLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMP 142
P+LH+ S +K P A++L PTREL +QVY E+ +++ G + +
Sbjct: 62 PMLHKSLKTKSFSAK-DPRAVILAPTRELAKQVYGELRSML----GGLTYDAALILGGEN 116
Query: 143 ASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 202
+D AL P ++ATPG + L L F D L+ LVLDEAD +L G+ +L
Sbjct: 117 FNDQVKALRRYPKFIVATPGRLADHLEHRSL----FLDGLETLVLDEADRMLDLGFAPEL 172
Query: 203 KALS-AVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF 260
+ + A R Q L+ SAT ++V+ + +L+ P + + V +E Q+F
Sbjct: 173 RRIHKAAKHRRRQTLMFSATLDHAEVNDIASEMLNAPKRIAI----GVSNEEHKDITQKF 228
Query: 261 WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 320
++ C D IL + E ++ +IFT T D RL L + +K+ L+ L Q
Sbjct: 229 YL-CDHLDHKEAILERVLEEAEYRQVIIFTATRDDTERLTNKLNENKLKAVALSGNLNQT 287
Query: 321 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 380
R I+ +F +F L+ TD RG+
Sbjct: 288 QRNTIMSQFERAVFKILVTTDVAS---------------------------------RGL 314
Query: 381 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDEN 440
D V VINF+MP++ YVHR+GRTGRA N G +VSLV P + F+ +++++ D N
Sbjct: 315 DIATVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAVSLVGPKDWDSFKRVETYLQQDLN 374
>gi|18645108|gb|AAL76409.1| ATP-dependent RNA helicase RhlE [uncultured marine proteobacterium]
Length = 446
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 138/414 (33%), Positives = 210/414 (50%), Gaps = 58/414 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF LGL L+ A+ +G P+ IQ +IP +LEG+DV+A A+TG+GKT + LPLLH
Sbjct: 11 SFSTLGLSESLLKAVADEGYTAPSPIQAQAIPAVLEGRDVMAAAQTGTGKTAGFTLPLLH 70
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
L ++ P ALVL PTREL QV V ++ + L+ + + +
Sbjct: 71 GL-SKGQPAKANQVRALVLTPTRELAAQVAESV----DIYGKYLNLRSAVVFGGVKINPQ 125
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
L DI+IATPG + L + SF L++L+LDEAD +L G+ D++ +
Sbjct: 126 MMRLRKGVDILIATPG---RLLDLYQQNAMSFQ-KLEVLILDEADRMLDMGFIHDIRRIM 181
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQFW 261
+P+ Q L+ SAT S D+ L K I++NP V+ V P+N V Q W
Sbjct: 182 KALPKKRQNLMFSATFSEDIRDLAKTIVNNP----------VEISVTPRNSTAVSVTQ-W 230
Query: 262 ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 321
I ++++ ++L L + ++ L+F+ T A RL FLEK I++A ++ Q +
Sbjct: 231 IHPVDKNQKRHLLVELINQHNWEQVLVFSRTKRGANRLAEFLEKKDIQAAAIHGNKSQGA 290
Query: 322 RLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGID 381
R L EF +G L+ATD RG+D
Sbjct: 291 RTRALSEFKSGKLRVLVATDI---------------------------------AARGLD 317
Query: 382 FKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ + V+N ++P+ A YVHRIGRTGRA TG ++SLVS DE ++ ++I+ +
Sbjct: 318 IEQLPQVVNLDLPEVAQDYVHRIGRTGRAGATGQAISLVSADEAQLLQDIERLI 371
>gi|262403204|ref|ZP_06079764.1| ATP-dependent RNA helicase [Vibrio sp. RC586]
gi|262350703|gb|EEY99836.1| ATP-dependent RNA helicase [Vibrio sp. RC586]
Length = 448
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 135/410 (32%), Positives = 211/410 (51%), Gaps = 49/410 (11%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F++LGLD RL+ L ++ T IQQ +IPL + G+D++A +KTGSGKT A++LP+LH+
Sbjct: 3 FKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHK 62
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+ +K P ++LVPTREL +QVY E+ +++ G + +T +D
Sbjct: 63 SLKTKAFSAK-DPRGVILVPTRELAKQVYGELRSML----GGLSYTATVITGGENFNDQV 117
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL-S 206
ALA P ++ATPG + L L F D L+ LVLDEAD +L G+ +L+ + +
Sbjct: 118 KALARGPRFIVATPGRLADHLDHRSL----FLDGLETLVLDEADRMLDLGFAKELRRIHN 173
Query: 207 AVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
A R Q L+ SAT +DV+ + +L++P + +G +E K++ Q + C
Sbjct: 174 AAKHRRRQTLMFSATLDHADVNDMAMEMLNDPKRIA---IGVGSEE--HKDITQHFYLCD 228
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
D +L + + ++ +IFT T RL L K +K+ L+ L Q R I
Sbjct: 229 HLDHKEALLDRILADADYRQVIIFTATRADTDRLTEKLNKNNLKAVALSGNLNQTQRNTI 288
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
+ +F +F L+ TD RG+D +V
Sbjct: 289 MGQFERTVFKILVTTDVAS---------------------------------RGLDIPSV 315
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
VINF+MP++ YVHRIGRTGRA N G ++SLV P + F+ +++F+
Sbjct: 316 THVINFDMPKHTEEYVHRIGRTGRAGNKGDAMSLVGPKDWDSFKRVEAFL 365
>gi|170725067|ref|YP_001759093.1| DEAD/DEAH box helicase [Shewanella woodyi ATCC 51908]
gi|169810414|gb|ACA84998.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
51908]
Length = 494
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 137/413 (33%), Positives = 201/413 (48%), Gaps = 56/413 (13%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF LGL ++ A+ +KG P+ IQ +IP +LEGKDV+A A+TG+GKT + LPLL
Sbjct: 2 SFTSLGLSAPILKAVAQKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLE 61
Query: 87 RLFNESSPKSKLAPA----ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMP 142
L + K APA ALVL PTREL QV V E + L+ + +
Sbjct: 62 LL-----SRGKRAPAKQVRALVLTPTRELAAQVAESV----ETYGKNLPLRSAVIFGGVG 112
Query: 143 ASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 202
+ L DI++ATPG + + G + K L++LVLDEAD +L G+ D+
Sbjct: 113 IGPQISKLGKGVDILVATPGRLLDLYNQGAVSFK----QLEVLVLDEADRMLDMGFIHDI 168
Query: 203 KALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWI 262
K + ++P Q L+ SAT S D+ L K +++NP E+ K V+Q+
Sbjct: 169 KKILKILPAKRQNLMFSATFSDDIRNLAKGLVNNPV-----EISVTPRNATAKTVEQYIY 223
Query: 263 SCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 322
++ K ++ L+K + K+ L+F+ T A R+ LE G+ +A ++ Q +R
Sbjct: 224 PVDQKQKTAALIHLVK-QNEWKQVLVFSRTKHGANRIAKNLEASGLTAAAIHGNKSQGAR 282
Query: 323 LHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDF 382
L F +G L+ATD RGID
Sbjct: 283 TKALANFKSGEVRVLVATDI---------------------------------AARGIDI 309
Query: 383 KNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ V+NF++P YVHRIGRTGRA G +VSLVS DE K+ +I+ +
Sbjct: 310 DQLPNVVNFDLPNVPEDYVHRIGRTGRAGANGQAVSLVSGDESKLLRDIERLI 362
>gi|432871164|ref|XP_004071864.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
[Oryzias latipes]
Length = 488
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 137/425 (32%), Positives = 219/425 (51%), Gaps = 54/425 (12%)
Query: 13 KQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKT 72
KQ +E+AEA K+F++LG+ L A ++ G + PT IQ +IP+ L+GKDV+ A+T
Sbjct: 27 KQIIDEDAEAAV-KTFKDLGVTDVLCEACDQLGWKSPTKIQVEAIPVALQGKDVIGLAET 85
Query: 73 GSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQL 132
GSGKT A+ LP+L L +SP+ LVL PTREL Q+ + AL + +
Sbjct: 86 GSGKTGAFALPILQSLL--ASPQRL---HTLVLTPTRELAFQISEQFEAL----GSSIGV 136
Query: 133 KVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEAD 191
K + + LA P IVIATPG + + +K FS +LK LV+DEAD
Sbjct: 137 KCAVIVGGIDMMSQSLVLAKKPHIVIATPGRLIDHMEN----TKGFSLRALKFLVMDEAD 192
Query: 192 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 251
+L+ +E ++ + VIPR + L SAT + V KL++ L +P + D+
Sbjct: 193 RILNMDFETEVDKILKVIPRERRTFLFSATMTKKVQKLQRAALKDPVKCAVSTKYSTVDK 252
Query: 252 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 311
+QQ+++ + K Y++++L EL +IF +T + A R+ L L GI +
Sbjct: 253 -----LQQYYVFIPAKYKDCYLVSILN-ELAGNSFMIFCSTCNNAQRVALMLRNLGITAI 306
Query: 312 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLD 371
L+ ++ QN RL L +F + L+ATD
Sbjct: 307 PLHGQMSQNKRLGALNKFKSKSRSVLLATDVAS--------------------------- 339
Query: 372 SEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 431
RG+D +V VIN+++P ++ Y+HR+GRT RA +G S++ V+ ++++F+ I
Sbjct: 340 ------RGLDIPHVDCVINYDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRI 393
Query: 432 KSFVG 436
+S +G
Sbjct: 394 ESLIG 398
>gi|343516142|ref|ZP_08753187.1| DEAD-box ATP dependent DNA helicase [Vibrio sp. N418]
gi|342796980|gb|EGU32640.1| DEAD-box ATP dependent DNA helicase [Vibrio sp. N418]
Length = 444
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 133/413 (32%), Positives = 211/413 (51%), Gaps = 49/413 (11%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F++LGLD RL+ LN +KPT IQ+ +IP+ + GKD++A +KTGSGKT A++LP+LH+
Sbjct: 3 FKDLGLDNRLLKTLNHYAFKKPTDIQKQAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHK 62
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+ +K P L+L PTREL +QVY E+ A++ G + + +D +
Sbjct: 63 SLKSKAFSAK-DPRGLILAPTRELAKQVYGELRAML----GGLSYDATLVVGGENFNDQQ 117
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS- 206
AL P ++ATPG + L L F D L+ L+LDEAD +L G+ +L+ +
Sbjct: 118 KALRRYPKFIVATPGRLADHLEHKSL----FLDGLETLILDEADRMLDLGFAPELRRIHK 173
Query: 207 AVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
A R Q L+ SAT ++++++ + +P + + V ++ Q+F++ C
Sbjct: 174 AAKHRRRQTLMFSATLDHAEMNEIAAEMQDSPKRIAI----GVSNQEHQDITQKFYL-CD 228
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
D IL + E ++ +IFT T RL L L + +K+ L+ L Q R I
Sbjct: 229 HLDHKEAILDRVLEEANYRQLIIFTATRADTERLTLKLNEQKLKAVALSGGLTQTQRNTI 288
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
+ +F +F L+ TD RG+D NV
Sbjct: 289 MSQFERAVFKILVTTDIAS---------------------------------RGLDIANV 315
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD 438
V+NF+MP++ YVHR+GRTGRA N G +VSLV P + F+ +++++ D
Sbjct: 316 THVVNFDMPKHTEEYVHRVGRTGRAGNKGDAVSLVGPKDWDSFKRVEAYLHQD 368
>gi|374335360|ref|YP_005092047.1| DEAD/DEAH box helicase [Oceanimonas sp. GK1]
gi|372985047|gb|AEY01297.1| DEAD-box ATP dependent DNA helicase [Oceanimonas sp. GK1]
Length = 460
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 139/416 (33%), Positives = 214/416 (51%), Gaps = 50/416 (12%)
Query: 22 AEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYL 81
A+ +F + GLD RLV AL+ +G+ PT IQ +IP+++ G D++A +KTGSGKT AYL
Sbjct: 2 AQNNDTFRDFGLDTRLVRALDHQGLNTPTDIQLKAIPVVMAGFDLLASSKTGSGKTLAYL 61
Query: 82 LPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSM 141
LP L RL ++ SK P AL+L PTREL +QVY+++ +L + + L
Sbjct: 62 LPALQRLM-KTRALSKRDPRALILAPTRELARQVYAQLRSL-----AGNSVNIALLLGGE 115
Query: 142 PASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDD 201
+D +L PD+++ATPG + L L + L++L+LDEAD +L G+
Sbjct: 116 NFNDQLKSLRRQPDVIVATPGRLANHLDARSL----MLNGLELLILDEADRMLDLGFAPQ 171
Query: 202 LKALS-AVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
L+ ++ A R Q L+ SAT ++ + + +L +P + VG+ E ++++Q
Sbjct: 172 LERINQAADHRRRQTLMFSATLDHAETNAMAATLLTSPKRVA---VGEAHAEH--QDIEQ 226
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
++ D +L L ++A+IFT T RL L++ + +A L+ +L Q
Sbjct: 227 RFVLGDHLDHKQALLEHLLASEPYQQAIIFTATRADTERLASHLQQTELTTAALHGDLSQ 286
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
R I++ F G LI TD V S RG
Sbjct: 287 AERNRIMDAFARGQHKLLITTD---------------VAS------------------RG 313
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+D V VINF+MP+ A YVHRIGRTGRA +G +VSLV P + F+ ++ F+
Sbjct: 314 LDLLQVSLVINFDMPKQAEEYVHRIGRTGRAGASGTAVSLVGPRDWDAFKRVERFL 369
>gi|403347814|gb|EJY73340.1| hypothetical protein OXYTRI_05530 [Oxytricha trifallax]
Length = 508
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 134/428 (31%), Positives = 209/428 (48%), Gaps = 55/428 (12%)
Query: 11 EVKQAE--EEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVA 68
E+K+ + EEE +FE+LG+ L AL G + PT IQ S+ L+GKD++
Sbjct: 42 EIKEEDIVEEEKTIMSSTTFEKLGVCSELQEALKNMGYKCPTKIQAESLQYTLKGKDIIG 101
Query: 69 RAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKG 128
A+TGSGKT A+ +P++ +L + P A V+ PTRELC Q+ + A+
Sbjct: 102 LAETGSGKTAAFAIPVIQQLLDNPQP-----FFACVMSPTRELCVQIAEQFEAI----GA 152
Query: 129 QVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVL 187
+ L+ L + AL+ P +VI TPG M L+ +K F LK L+
Sbjct: 153 GIGLRTAVLVGGLDMVSQAIALSKNPHVVIGTPGRMADHLA----NTKGFHLKKLKFLIF 208
Query: 188 DEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGD 247
DEAD LLS +E + + IP+ L SAT +S V KL++ L++P + +
Sbjct: 209 DEADRLLSMDFEKQINLILTQIPKSRNTYLFSATMTSKVQKLQRASLNDPVKIEVSSKYK 268
Query: 248 VKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFG 307
D ++ Q +I E+ K Y++ LL + +K +IFT T + + +L L L
Sbjct: 269 TVDTLV-----QNYIFIPEKHKETYLVYLLT-QFAGQKMIIFTTTCNQSMKLALILRNLN 322
Query: 308 IKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPK 367
K+ +N +L Q RL L +F A + LIATD
Sbjct: 323 FKAVNINGQLTQTQRLSALNKFKANERNILIATDVAS----------------------- 359
Query: 368 AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 427
RG+D V VINF++PQ++ YVHR+GRT RA TG +++ V+ +++
Sbjct: 360 ----------RGLDIPEVDFVINFDIPQHSKDYVHRVGRTARAGKTGKAITFVTQYDVET 409
Query: 428 FEEIKSFV 435
F++I+ +
Sbjct: 410 FQKIEQLI 417
>gi|225561576|gb|EEH09856.1| ATP-dependent RNA helicase DRS1 [Ajellomyces capsulatus G186AR]
Length = 829
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 152/513 (29%), Positives = 243/513 (47%), Gaps = 74/513 (14%)
Query: 15 AEEEEAEAEEE----KSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARA 70
A EE+A A + KSF+ L ++ L G PT IQ+ +IP+ L GKDVV A
Sbjct: 290 APEEKASANGDLKSAKSFQAFSLSRPILRGLTSVGFTTPTPIQRKTIPVALLGKDVVGGA 349
Query: 71 KTGSGKTFAYLLPLLHRLFNESS--PKSKLAPAALVLVPTRELCQQVYSEVMALIELCKG 128
TGSGKT A+++P+L RL P S++A +L+PTREL Q Y+ L
Sbjct: 350 VTGSGKTGAFIIPILERLLYRPRKVPTSRVA----ILMPTRELAVQCYNVATKLATFT-- 403
Query: 129 QVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVL 187
+ QL + L PD++IATPG + S SF+ D+L+ILVL
Sbjct: 404 --DITFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMR----NSASFTVDTLEILVL 457
Query: 188 DEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGD 247
DEAD +L G+ D+L + IP+ Q +L SAT +++VDKL ++ L+ P L + D
Sbjct: 458 DEADRMLEDGFTDELNEILTTIPKSRQTMLFSATMTNNVDKLIRVGLNRPVRLMV----D 513
Query: 248 VKDEVIPKNVQQF--WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEK 305
K + + +Q+F E +L Y++ L K + + + ++F + A R+++
Sbjct: 514 AKKQTVGTLIQEFVRLRPGREEKRLGYLIVLCK-NIYKDRVIVFFRSKKEAHRVRIIFGL 572
Query: 306 FGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKH 365
G+K L+ + Q R+ +E F G +L+ATD
Sbjct: 573 LGLKVTELHGSMSQEQRIKSVESFRDGKVSFLLATDVAS--------------------- 611
Query: 366 PKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM 425
RG+D K V TVIN+E PQ+ Y+HR+GRT RA +G + +L + +
Sbjct: 612 ------------RGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDR 659
Query: 426 KIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLR 485
K+ +K+ V + + I++ A E+ ++ A+ + LR
Sbjct: 660 KV---VKAAVKTGRAQGAKIVSRLIETA----EADKWAAKVEEMQEEVQEI-------LR 705
Query: 486 NEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKP 518
E + +A EV + +LL H+K++ +P
Sbjct: 706 EEKEEKQLAQAEMEVT-RGSNLLNHEKEIMSRP 737
>gi|88705999|ref|ZP_01103707.1| ATP-dependent RNA helicase RhlE [Congregibacter litoralis KT71]
gi|88699713|gb|EAQ96824.1| ATP-dependent RNA helicase RhlE [Congregibacter litoralis KT71]
Length = 443
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 140/414 (33%), Positives = 205/414 (49%), Gaps = 57/414 (13%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F++L L L+ A+ K+G K T IQQ +IPL+LEG D++A A+TG+GKT + LP+L R
Sbjct: 3 FKDLSLSAELLRAVEKQGYDKATPIQQKAIPLVLEGSDLLAGAQTGTGKTAGFTLPMLQR 62
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
L N+ +K P ALVL PTREL QV+ V + K + + + +
Sbjct: 63 LQNKYPGTAKSYPKALVLTPTRELAAQVHESVRD----YGAYLPFKSAVIFGGVSINPQK 118
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS-LKILVLDEADLLLSYGYEDDLKALS 206
L D+V+ATPG + +Q +S S ++ILVLDEAD +L G+ D++ +
Sbjct: 119 QKLIKGVDVVVATPGRLLDH-----VQQRSIDLSKIEILVLDEADRMLDMGFIHDIRRVM 173
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS- 265
VIP+ Q LL SAT S+++ KL L NP + +V P+N +S
Sbjct: 174 KVIPKQRQTLLFSATFSNEIKKLASEFLENPQQI----------QVTPQNTATKLVSQRV 223
Query: 266 ---ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 322
++ + +L+ E ++ LIFT T A RL L K GI SA ++ Q +R
Sbjct: 224 YPVDKGRKRELLSQQIGEGNWQQVLIFTRTKHGANRLAEQLSKDGISSAAIHGNKSQGAR 283
Query: 323 LHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDF 382
L EF +G L+ATD RGID
Sbjct: 284 TRALAEFKSGAIRALVATDIA---------------------------------ARGIDI 310
Query: 383 KNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
+ V+N+E+P A Y+HRIGRT RA G ++SLV DE+K+ +I+ +G
Sbjct: 311 DKLPHVVNYELPNVAEDYIHRIGRTARAGQEGHAISLVCVDELKLLRDIEKLLG 364
>gi|383937020|ref|ZP_09990435.1| ATP-dependent RNA helicase srmB homolog [Rheinheimera nanhaiensis
E407-8]
gi|383701930|dbj|GAB60526.1| ATP-dependent RNA helicase srmB homolog [Rheinheimera nanhaiensis
E407-8]
Length = 437
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 141/413 (34%), Positives = 211/413 (51%), Gaps = 55/413 (13%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F +L LD RL+ ++ G KPT IQ +IP ++ G+D++ ++TGSGKT AYLLP++ R
Sbjct: 3 FNDLALDPRLLRSVQHLGFVKPTDIQAEAIPAVMVGRDLIVSSQTGSGKTLAYLLPMMQR 62
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
L +S P SK AL+L PTREL +QVY++ + L L + +D
Sbjct: 63 LL-KSRPLSKRDARALILAPTRELAKQVYAQ----LRLFVANTPLTSALIVGGENFNDQE 117
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS- 206
L PDI++ATPG L F + L++L+LDEAD +L G+ L ++
Sbjct: 118 KLLKREPDIIVATPGRFVDHLE----HKSVFINGLEVLILDEADRMLDLGFMPQLTVINK 173
Query: 207 AVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
A R Q L+ SAT ++VD+L +L NPY + VG + N QQF+++
Sbjct: 174 AADHRLRQTLMFSATLDHAEVDELALALLKNPYRVA---VGASYQQHQDIN-QQFYLA-- 227
Query: 266 ERDKLLYILTLLKLELVQ---KKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 322
D L + LL L Q K+ +IFT T + A RL L + G + L+ +L Q+SR
Sbjct: 228 --DHLSHKEALLSHFLQQDDIKQLIIFTATREDAERLALLCQTLGKTAVGLSGKLSQSSR 285
Query: 323 LHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDF 382
+++ F +G + L+ TD RG+D
Sbjct: 286 NSVMQAFASGKYQVLVTTDLAS---------------------------------RGLDL 312
Query: 383 KNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
V VINF++P++A YVHRIGRTGRA G ++SLV P ++ + I++F+
Sbjct: 313 LQVSHVINFDLPKHAEEYVHRIGRTGRAGAKGTAISLVGPKDVPALQRIEAFL 365
>gi|260769757|ref|ZP_05878690.1| ATP-dependent RNA helicase [Vibrio furnissii CIP 102972]
gi|260615095|gb|EEX40281.1| ATP-dependent RNA helicase [Vibrio furnissii CIP 102972]
Length = 397
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 139/412 (33%), Positives = 210/412 (50%), Gaps = 52/412 (12%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF +LGL L A+ + G QKPT IQ +IP+IL+G+D++A A+TG+GKT +++LP+LH
Sbjct: 2 SFSKLGLSEALTQAVAELGYQKPTTIQTKAIPVILQGQDLIAAAQTGTGKTASFVLPILH 61
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQ-VQLKVVQLTSSMPASD 145
+L + + K AL+LVPTREL QV +V GQ L + + +
Sbjct: 62 KLQGRETQRKKRI-RALILVPTRELAIQVADKVAQY-----GQHTGLTTLAMYGGVEEQA 115
Query: 146 LRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL 205
+ L D+++ATPG + Q + + ++++VLDEAD +L G+ D + +
Sbjct: 116 QKQRLIEGVDVLVATPGRLLDMYG----QRAVYFEEVEMVVLDEADRMLDMGFIDSINKI 171
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
+PR Q LL SAT S V L K +++P+ E+ ++ N++Q W+
Sbjct: 172 IDRLPRDAQYLLFSATLSHKVRDLAKTAVNDPF-----EISIAANQASKSNIEQ-WLITV 225
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
++DK +L+ L E +ALIF T A +L LEK GI + ++ Q R+ +
Sbjct: 226 DKDKKSALLSHLITENNWDQALIFIETKHGAAKLASQLEKRGITAEAFHSGRSQAVRVQL 285
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGV-VRGIDFKN 384
LE+F AG Y+IAT GV RGID
Sbjct: 286 LEDFKAGKIKYMIAT----------------------------------GVGARGIDIHE 311
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
+ V+N+++P A YVHRIGRTGRA G ++S VS D K I+S +G
Sbjct: 312 LSRVVNYDLPFPADEYVHRIGRTGRANAKGEAISFVSKDNFKNLCMIESRLG 363
>gi|149192500|ref|ZP_01870684.1| RhlE [Vibrio shilonii AK1]
gi|148833665|gb|EDL50718.1| RhlE [Vibrio shilonii AK1]
Length = 397
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 142/411 (34%), Positives = 208/411 (50%), Gaps = 50/411 (12%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF +LGL L+ A+ + G QKPT IQ +IP++L+G +++A A+TG+GKT +++LP+L
Sbjct: 2 SFSKLGLSQPLLDAIKEVGYQKPTTIQTKAIPIVLKGSNLIAAAQTGTGKTASFVLPILE 61
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
RL + + K A A++L PTREL QV + A + +K + + + +
Sbjct: 62 RLSAGQTERKKRA-RAIILTPTRELALQVNQSIEAYAQFTS----IKSMAMFGGVDYAPQ 116
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
+ AL DIV+ATPG + Q D ++ LVLDEAD +L G+ + + +
Sbjct: 117 KQALIDGVDIVVATPGRLIDLYG----QRAIHFDEVETLVLDEADKMLDMGFIEAINKII 172
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
A +P Q LL SAT S+ V L K + NP E+ K N++Q WI +
Sbjct: 173 ARVPEDAQSLLFSATLSNPVRDLAKSAIDNP-----EEIAITKHSASKSNIKQ-WIVTVD 226
Query: 267 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
+D +L+ L + K+ALIF T A +L LEK GI + ++ Q R ++
Sbjct: 227 KDMKSSLLSHLLQQNQWKQALIFIETKHGAAKLVSQLEKRGIAAEAFHSGRNQKVRQQLI 286
Query: 327 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGV-VRGIDFKNV 385
E F AG YL+AT GV RGID +N+
Sbjct: 287 ESFKAGEIQYLVAT----------------------------------GVAARGIDIENL 312
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
VIN+++P A YVHRIGRTGRA G ++SLVS D K I+S +G
Sbjct: 313 PVVINYDLPYPADEYVHRIGRTGRADAAGEALSLVSKDNFKNLCMIESRLG 363
>gi|255021847|ref|ZP_05293857.1| ATP-dependent RNA helicase RhlE [Acidithiobacillus caldus ATCC
51756]
gi|340782596|ref|YP_004749203.1| ATP-dependent RNA helicase RhlE [Acidithiobacillus caldus SM-1]
gi|254968671|gb|EET26223.1| ATP-dependent RNA helicase RhlE [Acidithiobacillus caldus ATCC
51756]
gi|340556748|gb|AEK58502.1| ATP-dependent RNA helicase RhlE [Acidithiobacillus caldus SM-1]
Length = 429
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 142/417 (34%), Positives = 203/417 (48%), Gaps = 65/417 (15%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F ELGLD L A +G ++ T IQ +IP IL+G D++A A+TG+GKT A+ LP+LHR
Sbjct: 20 FTELGLDPALCAAAVARGYEQATPIQARAIPEILKGHDILAAAQTGTGKTAAFALPILHR 79
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
L + AL+LVPTREL QV I L +GQ+ ++ + L +
Sbjct: 80 LARDPVSSGPRPVRALILVPTRELAAQVEDN----IRLYRGQMPVRSLMLIGGVKIGPQM 135
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALS 206
L DIV+ATPG + LQ +S D ++ LVLDEAD +L G+ D++ +
Sbjct: 136 EQLRNGADIVVATPGRLLDH-----LQQRSLRLDRVETLVLDEADRMLDMGFIRDIRRII 190
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQFW 261
++P Q LL SAT S ++ +L + +LH P + EV P N + Q
Sbjct: 191 GMLPAKRQNLLFSATFSPEIRQLAEGLLHQPIAV----------EVTPANATVDSITQRV 240
Query: 262 ISCSE---RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELP 318
I + RD LL+++ + V LIFT T A RL +E+ G + ++
Sbjct: 241 IRVDQERKRDLLLHLMDAHQWHQV----LIFTRTKHGADRLARQMEREGFSAMAIHGNKS 296
Query: 319 QNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVR 378
Q +R L EF +G L+ATD R
Sbjct: 297 QGARTRALAEFKSGSLRALVATDIA---------------------------------AR 323
Query: 379 GIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
GID + + V+NFE+PQ A YVHRIGRTGRA G +VSLVS +E + ++ +
Sbjct: 324 GIDIQRLPRVVNFELPQVAEDYVHRIGRTGRAGEDGEAVSLVSGEERSQLQAVERLL 380
>gi|241663607|ref|YP_002981967.1| DEAD/DEAH box helicase [Ralstonia pickettii 12D]
gi|240865634|gb|ACS63295.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12D]
Length = 493
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 132/428 (30%), Positives = 213/428 (49%), Gaps = 54/428 (12%)
Query: 15 AEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGS 74
+E EA A E +F+ GL ++ AL + G KPT IQ A+IP++ G+DV+ A+TG+
Sbjct: 2 SEASEAPANESVTFDSFGLHPDVLRALTESGYTKPTPIQAAAIPVVTAGRDVMGAAQTGT 61
Query: 75 GKTFAYLLPLLHRLF---NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQ 131
GKT + LP++H L N S+ ++ AL+L PTREL QVY V + +
Sbjct: 62 GKTAGFSLPIIHNLLPDANTSASPARHPVRALILTPTRELADQVYDNVAKYAKYTALRSA 121
Query: 132 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS-LKILVLDEA 190
+ + + LR + +I++ATPG + +Q +S + S +++LVLDEA
Sbjct: 122 VVFGGVDMNPQTEQLRRGV----EILVATPGRL-----LDHVQQRSVNLSQVRMLVLDEA 172
Query: 191 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD 250
D +L G+ DL+ + ++P Q LL SAT S ++ KL L +P + + +
Sbjct: 173 DRMLDMGFLPDLQRIINLLPAHRQTLLFSATFSPEIKKLAASYLRHPQTIEV-----ARS 227
Query: 251 EVIPKNVQQFWISCSERDKLLYILTLLKLELVQ---KKALIFTNTIDMAFRLKLFLEKFG 307
+NV+Q + + K ++ LLK Q ++ ++F+N+ RL LE+ G
Sbjct: 228 NATAENVRQVIYTVPDNHKQAALVHLLKQRAEQGLPRQCIVFSNSKIGCSRLARALEREG 287
Query: 308 IKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPK 367
I + ++ + Q R+ LE F G D L+ATD
Sbjct: 288 INANAIHGDKTQTERMQTLEAFKQGTVDVLVATDV------------------------- 322
Query: 368 AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 427
RG+D + VINF++P NA YVHRIGRTGRA +G ++SL +P + ++
Sbjct: 323 --------AARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFAPGDERL 374
Query: 428 FEEIKSFV 435
+I+ +
Sbjct: 375 LADIEKLI 382
>gi|163750900|ref|ZP_02158133.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
benthica KT99]
gi|161329324|gb|EDQ00321.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
benthica KT99]
Length = 492
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 138/416 (33%), Positives = 206/416 (49%), Gaps = 48/416 (11%)
Query: 20 AEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFA 79
A ++ SF LGL ++ A+ KG + PT IQ +IP +LEGKDV+A A+TG+GKT
Sbjct: 8 ASRDQSMSFTSLGLSAPILKAVANKGYETPTPIQAQAIPAVLEGKDVMAAAQTGTGKTAG 67
Query: 80 YLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTS 139
+ LPLL L + ++K ALVL PTREL QV V + + LK +
Sbjct: 68 FTLPLLELLSRGNRAQAKKV-RALVLTPTRELAAQVAESV----DTYGKYLPLKSAVVFG 122
Query: 140 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE 199
+ + L DI++ATPG + + G + +F + L++LVLDEAD +L G+
Sbjct: 123 GVGIGPQISKLGKGVDILVATPGRLLDLYNQGAV---NF-NQLEVLVLDEADRMLDMGFI 178
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
D+K + +P Q L+ SAT S D+ KL K +++NP E+ K+V+Q
Sbjct: 179 HDIKKILRALPAKRQNLMFSATFSDDIRKLAKGLVNNPV-----EISVTPRNATAKSVEQ 233
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+ ++ K ++ L+K Q + L+F+ T A R+ LE I +A ++ Q
Sbjct: 234 YIYMVDQKQKTAALIHLIKQNDWQ-QVLVFSRTKHGANRIAKNLEAKDITAAAIHGNKSQ 292
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
+R L F +GL L+ATD RG
Sbjct: 293 GARTKALANFKSGLVRVLVATDI---------------------------------AARG 319
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
ID + V+NF++P YVHRIGRTGRA +G +VSLVS DE K+ +I+ +
Sbjct: 320 IDIDQLPNVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSADESKLLRDIERLI 375
>gi|443922203|gb|ELU41680.1| ATP-dependent RNA helicase drs1 [Rhizoctonia solani AG-1 IA]
Length = 1126
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 141/411 (34%), Positives = 204/411 (49%), Gaps = 50/411 (12%)
Query: 21 EAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAY 80
+A+ SF + L L+ AL G PT IQ A+IP+ L GKDVV A TGSGKT A+
Sbjct: 181 DAQVHTSFTSMNLSRPLLRALTSAGFNSPTPIQAATIPVALLGKDVVGGAVTGSGKTAAF 240
Query: 81 LLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSS 140
++P+L RL S LVLVPTREL Q ++ L + L V L+
Sbjct: 241 IIPILERLLYRSRDAHT---RVLVLVPTRELAVQCHAVAEKLGTFTDVRCALIVGGLSLK 297
Query: 141 MPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYE 199
+ LR PD+V+ATPG + L S+SF+ D+L +LVLDEAD +LS G+
Sbjct: 298 AQEATLRTR----PDLVVATPGRLIDHLR----NSRSFALDALDVLVLDEADRMLSDGFA 349
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
D+LK + P G Q +L SAT + DV+ L +L L +P L + D + VQ+
Sbjct: 350 DELKEIVQSCPTGRQTMLFSATMTDDVETLIRLSLRHPVRLFV----DPSKQTARGLVQE 405
Query: 260 FW-ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELP 318
F + + + +L L +K +IF + +A + ++ G+K+ L+ L
Sbjct: 406 FVRVRAGKEAERPALLVALCQRTARKGVIIFFRSKKLAHQFRVVFGLCGLKALELHGNLT 465
Query: 319 QNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVR 378
Q RL+ L +F +G DYL+ATD L S R
Sbjct: 466 QEQRLNALTKFRSGEADYLLATD----------------------------LAS-----R 492
Query: 379 GIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFE 429
G+D + + TVIN++MP YVHR+GRT RA G S++LV + K+ +
Sbjct: 493 GLDIRGIETVINYDMPGQIEQYVHRVGRTARAGKKGRSITLVGEADRKMLK 543
>gi|358449520|ref|ZP_09160004.1| DEAD/DEAH box helicase domain-containing protein [Marinobacter
manganoxydans MnI7-9]
gi|357226275|gb|EHJ04756.1| DEAD/DEAH box helicase domain-containing protein [Marinobacter
manganoxydans MnI7-9]
Length = 440
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 141/415 (33%), Positives = 207/415 (49%), Gaps = 61/415 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF LGL +LV A + +G + P+ IQ +IP +L G+DV+A A+TG+GKT + LPLL
Sbjct: 2 SFSSLGLSEQLVRATSDQGYETPSPIQAQAIPAVLSGRDVMAAAQTGTGKTAGFTLPLLQ 61
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELC--KGQVQLKVVQLTSSMPAS 144
RL +P++ P AL+L PTREL QV+ V + K V V++ M
Sbjct: 62 RL--GENPRTGKGPRALILTPTRELAAQVHDSVNLYSKYVPTKAAVVFGGVKINPQM--M 117
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
LR L D+++ATPG + Q+ + ++ILVLDEAD +L G+ D++
Sbjct: 118 KLRKGL----DVLVATPGRLMDLYQ----QNAVRFNEVEILVLDEADRMLDMGFIRDIRK 169
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264
+ A++P Q LL SAT S+++ L + +L NP V+ EV +N I
Sbjct: 170 ILALLPAKRQNLLFSATFSNEIRTLAEGLLDNP----------VQVEVAARNTSAENIKQ 219
Query: 265 S----ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 320
S ++ + +L+ L + + L+FT T A RL LEK GI +A ++ Q
Sbjct: 220 SVYPVDQSQKTALLSKLVRDNSWDQVLVFTRTKHGANRLTQKLEKDGITAAAIHGNKSQG 279
Query: 321 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 380
+R L +F AG L+ATD RG+
Sbjct: 280 ARTRALADFKAGEVRVLVATDI---------------------------------AARGL 306
Query: 381 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
D K + V+NFE+P YVHRIGRTGRA +G ++SLVS DE K+ I+ +
Sbjct: 307 DIKQLPQVVNFELPNVPEDYVHRIGRTGRAGESGHALSLVSADEGKMLAGIERLI 361
>gi|404421752|ref|ZP_11003461.1| DEAD/DEAH box helicase [Mycobacterium fortuitum subsp. fortuitum
DSM 46621]
gi|403658619|gb|EJZ13342.1| DEAD/DEAH box helicase [Mycobacterium fortuitum subsp. fortuitum
DSM 46621]
Length = 499
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 130/409 (31%), Positives = 197/409 (48%), Gaps = 46/409 (11%)
Query: 26 KSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLL 85
K+F ELG+ +V AL++ GI+ P IQ+ ++PL L G D++ +A+TG GKT+A+ +PLL
Sbjct: 6 KTFAELGVRDEIVRALSENGIEHPFAIQELTLPLALAGDDLIGQARTGMGKTYAFGIPLL 65
Query: 86 HRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKG-QVQLKVVQLTSSMPAS 144
HR+ + + P AL++VPTRELC QVY ++ + G + V + P
Sbjct: 66 HRVSTDETRPLNGTPRALIVVPTRELCIQVYGDLAGAAKYLSGPDRKFSVTSIYGGRPYE 125
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
AL D+V+ TPG + G LQ S +LVLDEAD +L G+ D++
Sbjct: 126 PQIEALRKGVDVVVGTPGRLLDLAQQGHLQLGGLS----VLVLDEADEILDLGFLPDIER 181
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL--TLPEVGDVKDEVIPKNVQQFWI 262
+ + P Q +L SAT + L + ++ P + P D +QF
Sbjct: 182 ILRLTPDDRQSMLFSATMPDPIITLARTFMNQPTHIRAEAPHSAATHD-----TTEQFVY 236
Query: 263 SCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 322
DK + +L+ E + +IFT T A ++ L + G K ++ +L Q +R
Sbjct: 237 RAHALDKSELVSRILQAE-GRGATMIFTRTKRTAQKVSDELAERGFKVGAVHGDLGQGAR 295
Query: 323 LHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDF 382
L+ F G D L+ATD RGID
Sbjct: 296 EKALKSFRTGAVDVLVATDV---------------------------------AARGIDI 322
Query: 383 KNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 431
+V VIN++ P++ YVHRIGRTGRA TG +++LV DE+ +E I
Sbjct: 323 DDVTHVINYQCPEDEQAYVHRIGRTGRAGKTGVAITLVDWDELTRWETI 371
>gi|403164869|ref|XP_003324940.2| hypothetical protein PGTG_06477 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375165434|gb|EFP80521.2| hypothetical protein PGTG_06477 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 518
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 139/430 (32%), Positives = 216/430 (50%), Gaps = 55/430 (12%)
Query: 10 KEVKQAEEEEAEAEEE--KSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVV 67
++ K +E++AE EE K+FEELGL L A ++PT IQ SIP LE +D++
Sbjct: 54 RDKKDHQEDQAEQAEEVSKTFEELGLIPELCEACRTLNYKRPTPIQAESIPYALEDRDII 113
Query: 68 ARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCK 127
A+TGSGKT A+ LP+L L+N+ P VL PTREL Q+ + AL
Sbjct: 114 GLAQTGSGKTAAFALPVLQSLWNDPKPF-----FCCVLAPTRELAYQISQQFDAL----G 164
Query: 128 GQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILV 186
+ +K + + AL+ P I++ATPG + L +K FS +LK L+
Sbjct: 165 STIGVKTAVIVGGIDMMSQAIALSKRPHIIVATPGRLHDHLE----NTKGFSLRNLKYLI 220
Query: 187 LDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVG 246
+DEAD LL + + + VIPR + L SAT ++ V KL++ L +P + +
Sbjct: 221 MDEADRLLDMDFGPVIDKILKVIPRERRTYLFSATMTTKVAKLQRASLVSPVKVQMSTKY 280
Query: 247 DVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKF 306
D D ++ Q ++ ++K Y++ L+ EL K +IFT T+ A RL + L
Sbjct: 281 DTVDGLV-----QLYMFFPFKNKDAYLVYLVN-ELSGKSMIIFTRTVYDANRLSIILRLL 334
Query: 307 GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHP 366
G S L+ +L Q++RL L +F +G L+ATD
Sbjct: 335 GFPSIPLHGQLSQSTRLSSLNQFKSGNRSILVATDVAS---------------------- 372
Query: 367 KAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMK 426
RG+D V VINF++P N+ Y+HR+GRT RA +G +V+LV+ +++
Sbjct: 373 -----------RGLDIPTVDCVINFDLPTNSKDYIHRVGRTARAGRSGKAVTLVTQYDVE 421
Query: 427 IFEEIKSFVG 436
+ + I+ +G
Sbjct: 422 LLQRIEGVIG 431
>gi|344939864|ref|ZP_08779152.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
SV96]
gi|344261056|gb|EGW21327.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
SV96]
Length = 441
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 144/410 (35%), Positives = 202/410 (49%), Gaps = 48/410 (11%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF +LGL L+ A+ +G PT +QQ +IPLILEGKDV+A A+TG+GKT ++ LPLL
Sbjct: 2 SFAQLGLADELLKAVADQGYVTPTPVQQKAIPLILEGKDVLAGAQTGTGKTASFTLPLLQ 61
Query: 87 RLFNESSPKSKLAPA-ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASD 145
RL P K AL+LVPTREL QVY V + V + +
Sbjct: 62 RLAENHDPHQKPRRVRALILVPTRELAAQVYESVKTYGAHLPFHAEAVVGGASIGIQTRQ 121
Query: 146 LRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL 205
LR DIV+ATPG L V Q ++++LVLDEAD +L G+ D+K L
Sbjct: 122 LRRGC----DIVVATPG----RLIDHVQQRNINLSNVEVLVLDEADRMLDMGFLPDIKQL 173
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
A+IP+ Q LL SAT + + L +L+NP EV K +NV +
Sbjct: 174 MALIPKKRQSLLFSATVPNAIKSLAAQLLNNPV-----EVEVAKQNATAENVAERVYGIG 228
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
R+ +L+ L K+ L+F T A RL+ L + GI++A L+ + Q +R
Sbjct: 229 -REYKRELLSYLIGSNNWKQVLVFVRTKHGADRLEKQLIEDGIRTAALHGDKTQGARNKA 287
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
LE+F G L+ATD RG+D ++
Sbjct: 288 LEQFKTGKVSVLVATDIA---------------------------------ARGLDIDDL 314
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
V+NF++PQ Y+HRIGRTGRA G ++SLV P+E + EI+ +
Sbjct: 315 PHVVNFDVPQVPEDYIHRIGRTGRAGANGEALSLVCPEEAWMLVEIEKLL 364
>gi|296132950|ref|YP_003640197.1| DEAD/DEAH box helicase [Thermincola potens JR]
gi|296031528|gb|ADG82296.1| DEAD/DEAH box helicase domain protein [Thermincola potens JR]
Length = 529
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 133/414 (32%), Positives = 215/414 (51%), Gaps = 54/414 (13%)
Query: 24 EEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLP 83
E K+FE L L R++ A+ + G ++PT IQ +IP++L G DV+ +A+TG+GKT A+ +P
Sbjct: 3 ETKTFESLQLSRRILQAVKEMGFEEPTPIQAEAIPVLLNGHDVIGQAQTGTGKTAAFGIP 62
Query: 84 LLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQ-LKVVQLTSSMP 142
+L +L +P+ + A ALV+ PTREL QV E+M L G+ + ++ + +
Sbjct: 63 ILEKL----NPRYR-AVQALVITPTRELAIQVAEEIMKL-----GKFKDVRTLAVYGGQS 112
Query: 143 ASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 202
AL +V+ TPG + ++ G L+ + LK+LVLDEAD +L G+ DD+
Sbjct: 113 IDRQIGALKRGVQVVVGTPGRLLDHINRGTLRLQ----HLKMLVLDEADEMLDMGFIDDI 168
Query: 203 KALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWI 262
+A+ P Q LL SAT ++ +L + L NP ++ + KDE+ +++Q +
Sbjct: 169 EAIIKETPETRQTLLFSATMPHEIQQLARKYLKNPRLVAVS-----KDELTVPSIEQVYY 223
Query: 263 SCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 322
E+ KL + +L+ V A+IF T L LE G ++ L+ +L Q R
Sbjct: 224 EVREKTKLESLCRVLETIDV-TLAIIFCKTKRGVDELVASLETRGYQAEGLHGDLTQAQR 282
Query: 323 LHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDF 382
++ +F G DYL+ATD RG+D
Sbjct: 283 NKVMRKFKNGQVDYLVATDVA---------------------------------ARGLDI 309
Query: 383 KNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
+NV VIN+++PQ+ YVHRIGRTGRA +G +++ + P+E + I+ +G
Sbjct: 310 ENVSHVINYDIPQDPEVYVHRIGRTGRAGRSGKAITFIVPEEYRQLRLIEKIIG 363
>gi|154315003|ref|XP_001556825.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
gi|160358659|sp|A6RW56.1|RRP3_BOTFB RecName: Full=ATP-dependent rRNA helicase rrp3
gi|347841755|emb|CCD56327.1| similar to ATP-dependent rRNA helicase rrp3 [Botryotinia
fuckeliana]
Length = 486
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 136/418 (32%), Positives = 217/418 (51%), Gaps = 54/418 (12%)
Query: 26 KSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLL 85
KSF++LG+ L A + G + PT IQ+ SIPL L+G+D++ A+TGSGKT A+ LP+L
Sbjct: 60 KSFKDLGIVDSLCEACDTLGYKAPTPIQRESIPLALQGRDLIGLAETGSGKTAAFALPIL 119
Query: 86 HRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASD 145
L ++ P LVL PTREL Q+ + AL + +++K + M
Sbjct: 120 QALLDKPQPL-----FGLVLAPTRELAYQISQQFEALGSV----IRVKCAVIVGGMDMVP 170
Query: 146 LRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKA 204
AL P I++ATPG + L +K FS SLK LV+DEAD LL + L
Sbjct: 171 QSIALGKKPHIIVATPGRLLDHLE----NTKGFSLRSLKYLVMDEADRLLDLDFGPILDK 226
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-WIS 263
+ V+PR + L SAT SS V+ L++ L +P ++ + K + + +Q + +I
Sbjct: 227 ILKVLPRERRTYLFSATISSKVESLQRASLKDPLRVS---ISSNKYQTVSTLIQNYIFIP 283
Query: 264 CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+D Y++ LL E + A+IFT T++ R+ + L G + L+ +L Q+SRL
Sbjct: 284 LIHKDT--YLIYLLN-EFAGQSAIIFTRTVNETQRIAILLRTLGFGAIPLHGQLSQSSRL 340
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
L +F AG + L+ATD RG+D
Sbjct: 341 GALNKFRAGSREILVATDVA---------------------------------ARGLDIP 367
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENE 441
+V V+N+++PQ++ Y+HR+GRT RA +G ++S+V+ +++IF I++ +G + E
Sbjct: 368 SVDVVLNYDVPQDSKTYIHRVGRTARAGKSGHAISVVTQYDLEIFMRIEAALGKKQVE 425
>gi|357505249|ref|XP_003622913.1| ATP-dependent RNA helicase dbp9 [Medicago truncatula]
gi|355497928|gb|AES79131.1| ATP-dependent RNA helicase dbp9 [Medicago truncatula]
Length = 1155
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 139/420 (33%), Positives = 208/420 (49%), Gaps = 53/420 (12%)
Query: 19 EAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTF 78
E E +E KSF++LGL LV A K G + P IQ +IP LEGKD++ AKTGSGKT
Sbjct: 719 EEENKEMKSFKDLGLPESLVEACEKVGWKTPLEIQIEAIPPALEGKDLIGLAKTGSGKTG 778
Query: 79 AYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLT 138
A+ LP+LH L P A V+ PTREL Q+ + AL ++ +K L
Sbjct: 779 AFALPILHALLEAPRPNHFF---ACVMSPTRELAIQISEQFEAL----GSEIGVKCAVLV 831
Query: 139 SSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS-LKILVLDEADLLLSYG 197
+ +A P I++ TPG + L +K FS + LK LVLDEAD LL+
Sbjct: 832 GGIDMVQQSVKIAKLPHIIVGTPGRVLDHLK----NTKGFSLARLKYLVLDEADRLLNED 887
Query: 198 YEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNV 257
+E+ L + +IPR + L SAT ++ V+KL+++ L NP + E V
Sbjct: 888 FEESLNEILGMIPRERRTFLFSATMTNKVEKLQRVCLRNPVKI---ETSSKYSTVDTLKQ 944
Query: 258 QQFWISCSERD-KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAE 316
Q ++ +D L+YIL+ E+ +++FT T D L L L G+K+ +N
Sbjct: 945 QYRFLPAKHKDCYLVYILS----EMAGSTSMVFTRTCDSTRLLALILRNLGLKAIPINGH 1000
Query: 317 LPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGV 376
+ Q RL L +F +G + L+ TD
Sbjct: 1001 MSQPKRLGALNKFKSGDCNILLCTDVAS-------------------------------- 1028
Query: 377 VRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
RG+D V VIN+++P N+ Y+HR+GRT RA +G ++SLV+ E++ + +I+ +G
Sbjct: 1029 -RGLDIPAVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYVQIEKLIG 1087
>gi|331005215|ref|ZP_08328608.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium IMCC1989]
gi|330420958|gb|EGG95231.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium IMCC1989]
Length = 464
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 139/414 (33%), Positives = 208/414 (50%), Gaps = 58/414 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF LGL ++ A+ KG P+ IQ +IP++LEG+DV+A A+TG+GKT + LPLL
Sbjct: 2 SFTTLGLSDPILKAVTDKGYDTPSPIQAKAIPVVLEGRDVMAAAQTGTGKTAGFTLPLLE 61
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
+ ++ P ALVL PTREL QV V E ++L+ + + +
Sbjct: 62 -ILSKGQPARANQVRALVLTPTRELAAQVAESV----ETYGKHLKLRSAVVFGGVKINPQ 116
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
L G DI+IATPG + L + SF + L+IL+LDEAD +L G+ +D++ +
Sbjct: 117 MMKLRGGVDILIATPG---RLLDLHQQNAMSF-NKLEILILDEADRMLDMGFINDIRKIL 172
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQFW 261
+P Q L+ SAT S D+ L K I++ P ++ V PKN V Q W
Sbjct: 173 KALPEKRQNLMFSATFSDDIRDLAKTIVNKP----------IEISVTPKNSTATTVTQ-W 221
Query: 262 ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 321
I ++ + +L L + ++ L+F+ T A +L FLEK IK+A ++ Q +
Sbjct: 222 IHPVDKKQKPSLLVELIYQHKWEQVLVFSRTKHGANKLATFLEKHSIKAAAIHGNKSQGA 281
Query: 322 RLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGID 381
R L +F AG L+ATD RG+D
Sbjct: 282 RTRALADFKAGKVRVLVATDIA---------------------------------ARGLD 308
Query: 382 FKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ + V+N ++P A YVHRIGRTGRA TG +VSLVS DE++ ++I+ +
Sbjct: 309 IEQLPQVVNIDLPNVAEDYVHRIGRTGRAGATGQAVSLVSADEIQQLQDIERLI 362
>gi|367049970|ref|XP_003655364.1| hypothetical protein THITE_2119013 [Thielavia terrestris NRRL 8126]
gi|347002628|gb|AEO69028.1| hypothetical protein THITE_2119013 [Thielavia terrestris NRRL 8126]
Length = 755
Score = 195 bits (496), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 143/437 (32%), Positives = 217/437 (49%), Gaps = 56/437 (12%)
Query: 16 EEEEAEAEEEK--SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTG 73
EE E A++ K SF +L L L+ AL G +PT IQ +IP+ L GKDVV A TG
Sbjct: 220 EETEKPAKKGKLSSFLDLPLSRPLLRALTSVGFDEPTPIQAKTIPIALMGKDVVGGAVTG 279
Query: 74 SGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLK 133
SGKT A+++P+L RL + P ++L PTREL Q ++ L + L
Sbjct: 280 SGKTAAFMVPILERLLHR--PNKVPTTRVVILTPTRELAMQCHAVATKLARFTDIKFCLA 337
Query: 134 VVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADL 192
L+ + ++LR PD+VIATPG + S SF+ D ++ILVLDEAD
Sbjct: 338 AGGLSRKVQEAELRLR----PDVVIATPGRFIDHMRN----SASFAVDRVEILVLDEADR 389
Query: 193 LLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEV 252
+L G+ D+L + +P+ Q +L SAT +S VD L ++ L+ P + + D +
Sbjct: 390 MLEDGFADELNEILTTLPKSRQTMLFSATMTSSVDNLIRVGLNKPVRIMV----DSQKAT 445
Query: 253 IPKNVQQF--WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 310
Q+F E ++ Y++ + K L K+ +IF +A R ++ G+
Sbjct: 446 AGTLTQEFVRLRPGREEKRMGYLVHICKT-LYTKRVIIFFRQKKVAHRARIIFGLLGLSC 504
Query: 311 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL 370
A L+ + Q R+ +E+F G DYL+ATD L
Sbjct: 505 AELHGSMSQTQRIGSVEDFRDGKVDYLLATD----------------------------L 536
Query: 371 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE 430
S RG+D K V TVIN+E PQN YVHR+GRT RA +G +++L + + K+
Sbjct: 537 AS-----RGLDIKRVDTVINYEAPQNLEIYVHRVGRTARAGRSGVAITLAAEPDRKV--- 588
Query: 431 IKSFVGDDENEDSNIIA 447
+K+ V + + S I++
Sbjct: 589 VKAAVKAGKAQGSKIVS 605
>gi|90577494|ref|ZP_01233305.1| putative ATP-dependent RNA helicase RhlE [Photobacterium angustum
S14]
gi|90440580|gb|EAS65760.1| putative ATP-dependent RNA helicase RhlE [Photobacterium angustum
S14]
Length = 497
Score = 195 bits (496), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 144/416 (34%), Positives = 210/416 (50%), Gaps = 62/416 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF LGL ++ A+ K+G +KP+ IQ+ +IP IL GKDV+A A+TG+GKT + LPLL
Sbjct: 2 SFASLGLSAPILEAVAKQGYEKPSPIQEQAIPAILAGKDVMAAAQTGTGKTAGFTLPLLE 61
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCK--GQVQLKVVQLTSSMPAS 144
RL N +S ALVL PTREL QV V + + V V++ M
Sbjct: 62 RLANGRPARSNHV-RALVLTPTRELAAQVGESVATYGKNLRLSSAVVFGGVKVNPQM--- 117
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
LR + D+++ATPG + S ++ F D ++ILVLDEAD +L G+ D++
Sbjct: 118 -LR--MRKGADVLVATPGRLMDLHSQNAVK---FRD-VEILVLDEADRMLDMGFIRDIRK 170
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQ 259
+ A++P+ Q LL SAT S ++ +L K +++NP V+ +V P+N V+Q
Sbjct: 171 ILALLPKERQNLLFSATFSDEIRELAKGLVNNP----------VEIDVNPRNQTARTVKQ 220
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
WI ++ K +LT L E K+ L+FT T A +L LE G+ +A ++ Q
Sbjct: 221 -WICPVDQKKKPNLLTKLLNERNWKQVLVFTKTKHGANKLATHLESRGVSAAAIHGNKSQ 279
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
+R L F +G L+ATD RG
Sbjct: 280 GARTKALANFKSGDVRVLVATDI---------------------------------AARG 306
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+D + V+NF++P A YVHRIGRTGRA G ++SLVS +E K I+
Sbjct: 307 LDIDQLPQVVNFDLPHVAEDYVHRIGRTGRAGCVGEAISLVSAEEAKDLAAIERLT 362
>gi|295664398|ref|XP_002792751.1| ATP-dependent RNA helicase drs1 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226278865|gb|EEH34431.1| ATP-dependent RNA helicase drs1 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 835
Score = 195 bits (496), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 135/410 (32%), Positives = 206/410 (50%), Gaps = 55/410 (13%)
Query: 23 EEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLL 82
E KSF+ L ++ L G PT IQ+ +IP+ L GKDVV A TGSGKT A+++
Sbjct: 310 ETAKSFQAFSLSRPILRGLTSVGFTTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFII 369
Query: 83 PLLHRLFNESS--PKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSS 140
P+L RL P S++A +L+PTREL Q Y+ L + QL
Sbjct: 370 PILERLLYRPRKVPTSRVA----ILMPTRELAVQCYNVATKLATYT----DITFCQLVGG 421
Query: 141 MPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYE 199
+ L PD++IATPG + S SF+ D+L+ILVLDEAD +L G+
Sbjct: 422 FSLREQENILKKRPDVIIATPGRFIDHMR----NSASFTVDTLEILVLDEADRMLEDGFA 477
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
D+L + IP+ Q +L SAT ++ +DKL ++ L+ P L + + + + + VQ+
Sbjct: 478 DELNEILTTIPKSRQTMLFSATMTNTIDKLIRVGLNRPVRLMV----NAQKQTVGTLVQE 533
Query: 260 F-WISCSERDKLL-YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAEL 317
F + DK L Y++TL K + + + +IF A R+++ FG+K+A L+ +
Sbjct: 534 FVRLRPGREDKRLGYLVTLCKT-VYKDRVIIFFRAKKEAHRVRIIFGLFGLKAAELHGSM 592
Query: 318 PQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVV 377
Q R+ +E F G +L+ATD L S
Sbjct: 593 SQEQRIKSVESFRDGKVSFLLATD----------------------------LAS----- 619
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 427
RG+D K V TVIN+E PQ+ Y+HR+GRT RA +G + ++ + + K+
Sbjct: 620 RGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKV 669
>gi|114682555|ref|XP_001166506.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 isoform 5 [Pan
troglodytes]
Length = 796
Score = 195 bits (496), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 142/417 (34%), Positives = 200/417 (47%), Gaps = 49/417 (11%)
Query: 17 EEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGK 76
E+ ++ +E SF+++ L L+ A+ G ++PT IQ+A IP+ L GKD+ A A TG+GK
Sbjct: 209 EDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGK 268
Query: 77 TFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQ 136
T A+ LP+L RL + P+ LVLVPTREL QV+S L + C L V
Sbjct: 269 TAAFALPVLERLIYK--PRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGG 326
Query: 137 LTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLS 195
L + LRAA PDI+IATPG + L SF S+++L+LDEAD +L
Sbjct: 327 LDVKSQEAALRAA----PDILIATPGRLIDHLHN----CPSFHLSSIEVLILDEADRMLD 378
Query: 196 YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK 255
+E+ +K + + Q +L SAT + +V L + L NP + + + +V P
Sbjct: 379 EYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFV----NSNTDVAPF 434
Query: 256 NVQQFW-ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILN 314
Q+F I + I+ L ++FT T A R+ + L G++ L+
Sbjct: 435 LRQEFIRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELH 494
Query: 315 AELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEF 374
L Q RL L F D L+ATD
Sbjct: 495 GNLSQTQRLEALRRFKDEQIDILVATD--------------------------------- 521
Query: 375 GVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 431
RG+D + V TVINF MP YVHR+GRT RA G SVSLV DE K+ +EI
Sbjct: 522 VAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEI 578
>gi|224593278|ref|NP_060365.7| probable ATP-dependent RNA helicase DDX27 [Homo sapiens]
gi|29427946|sp|Q96GQ7.2|DDX27_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX27; AltName:
Full=DEAD box protein 27
gi|116497013|gb|AAI26288.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo sapiens]
gi|119596072|gb|EAW75666.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27, isoform CRA_b [Homo
sapiens]
gi|120660308|gb|AAI30276.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo sapiens]
gi|219519028|gb|AAI44126.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo sapiens]
gi|313883552|gb|ADR83262.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [synthetic construct]
Length = 796
Score = 195 bits (496), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 142/417 (34%), Positives = 200/417 (47%), Gaps = 49/417 (11%)
Query: 17 EEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGK 76
E+ ++ +E SF+++ L L+ A+ G ++PT IQ+A IP+ L GKD+ A A TG+GK
Sbjct: 209 EDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGK 268
Query: 77 TFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQ 136
T A+ LP+L RL + P+ LVLVPTREL QV+S L + C L V
Sbjct: 269 TAAFALPVLERLIYK--PRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGG 326
Query: 137 LTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLS 195
L + LRAA PDI+IATPG + L SF S+++L+LDEAD +L
Sbjct: 327 LDVKSQEAALRAA----PDILIATPGRLIDHLHN----CPSFHLSSIEVLILDEADRMLD 378
Query: 196 YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK 255
+E+ +K + + Q +L SAT + +V L + L NP + + + +V P
Sbjct: 379 EYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFV----NSNTDVAPF 434
Query: 256 NVQQFW-ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILN 314
Q+F I + I+ L ++FT T A R+ + L G++ L+
Sbjct: 435 LRQEFIRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELH 494
Query: 315 AELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEF 374
L Q RL L F D L+ATD
Sbjct: 495 GNLSQTQRLEALRRFKDEQIDILVATD--------------------------------- 521
Query: 375 GVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 431
RG+D + V TVINF MP YVHR+GRT RA G SVSLV DE K+ +EI
Sbjct: 522 VAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEI 578
>gi|303283946|ref|XP_003061264.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457615|gb|EEH54914.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 809
Score = 195 bits (496), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 145/493 (29%), Positives = 238/493 (48%), Gaps = 65/493 (13%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF +L L +L+ A G PT IQ A +PL L G+D+ RA TGSGKT A++LPLL
Sbjct: 179 SFNDLNLSRQLIRACTALGYDVPTPIQAAVVPLALTGRDICGRAVTGSGKTAAFMLPLLE 238
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
R+ + + ++ A LVLVPTREL QV+ M L + + L V L+++ A++L
Sbjct: 239 RMLHRGA-RAAAATHVLVLVPTRELAVQVHQMTMRLAQFTSIRAALVVGGLSANTQAAEL 297
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
R P+IV+ATPG + + S D L LVLDEAD LL G+ ++++ +
Sbjct: 298 RTR----PEIVVATPGRLIDHVRN--THSVGLED-LAALVLDEADRLLEMGFLEEIREIV 350
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
P Q +L SAT +S V +L + + +P L+ ++G + + ++ + S
Sbjct: 351 RHCPTRRQTMLFSATLTSGVQELAEFSMKHPARLSADQIGTTPGTLTEEVLRLRPGAASM 410
Query: 267 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
++ +++ L+ KK+++F+ T A RLK+ + GI +A L+ +L Q RL L
Sbjct: 411 KE--AHLMALVNRTFT-KKSIVFSRTKQQAHRLKIVMGLAGIVAAELHGDLSQTQRLAAL 467
Query: 327 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 386
E F G +L+ATD RG+D V
Sbjct: 468 ESFRVGEASHLVATDV---------------------------------AARGLDIAGVD 494
Query: 387 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNII 446
VI+++ P+ A Y+HR+GRT RA G +++ + + K+ + + S ++
Sbjct: 495 AVISYDAPRTLASYLHRVGRTARAGKRGTALTFMEESDRKLVKAV-------SKRGSKLV 547
Query: 447 APFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDL-RNEILNSEKLKAHFEVNPKDL 505
A L + VE + E +A + ++ E + L R E+ E +KA
Sbjct: 548 ARS--LPNHVVEEWHAKIEAMADQIKEVEYEERAEKHLNRAEM---EAIKAE-------- 594
Query: 506 DLLKHDKDLSKKP 518
+L+ H K++ +P
Sbjct: 595 NLMTHSKEIHARP 607
>gi|297797047|ref|XP_002866408.1| hypothetical protein ARALYDRAFT_919338 [Arabidopsis lyrata subsp.
lyrata]
gi|297312243|gb|EFH42667.1| hypothetical protein ARALYDRAFT_919338 [Arabidopsis lyrata subsp.
lyrata]
Length = 455
Score = 195 bits (496), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 140/427 (32%), Positives = 209/427 (48%), Gaps = 57/427 (13%)
Query: 19 EAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTF 78
E E E K+F ELG+ LV A + G + P+ IQ ++P LEGKDV+ A+TGSGKT
Sbjct: 2 EEENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTG 61
Query: 79 AYLLPLLHRLFN---ESSPKSKLAP----AALVLVPTRELCQQVYSEVMALIELCKGQVQ 131
A+ +P+L L +S PK P A VL PTREL Q+ + AL +
Sbjct: 62 AFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEAL----GADIS 117
Query: 132 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEA 190
L+ L + AL P +++ATPG + +S +K FS SLK LVLDEA
Sbjct: 118 LRCAVLVGGIDRMQQTIALGKRPHVIVATPGRLWDHMS----DTKGFSLKSLKYLVLDEA 173
Query: 191 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD 250
D LL+ +E L + IPR + L SAT + V KL++ L NP + E
Sbjct: 174 DRLLNEDFEKSLNQILEEIPRERKTFLFSATMTKKVRKLQRACLRNPVKI---EAASKYS 230
Query: 251 EVIPKNVQQFWISCSERD-KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIK 309
V Q +++ +D L+YIL+ E+ + ++IFT T D L L L G +
Sbjct: 231 TVDTLKQQYRFVAAKYKDCYLVYILS----EMPESTSMIFTRTCDGTRFLALVLRSLGFR 286
Query: 310 SAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAK 369
+ ++ ++ Q+ RL L +F AG + L+ TD
Sbjct: 287 AIPISGQMTQSKRLGALNKFKAGECNILVCTDVAS------------------------- 321
Query: 370 LDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFE 429
RG+D +V VIN+++P N+ Y+HR+GRT RA +G +SLV+ E++ +
Sbjct: 322 --------RGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQYELEWYI 373
Query: 430 EIKSFVG 436
+I+ +G
Sbjct: 374 QIEKLIG 380
>gi|71280656|ref|YP_266818.1| DEAD-box ATP dependent DNA helicase [Colwellia psychrerythraea 34H]
gi|71146396|gb|AAZ26869.1| ATP-dependent RNA helicase, DEAD box family [Colwellia
psychrerythraea 34H]
Length = 420
Score = 195 bits (496), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 139/409 (33%), Positives = 208/409 (50%), Gaps = 49/409 (11%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
+F LD L+ A+ + +PT IQ+ SIPLIL DV+ARA+TG+GKT A+ LP+L
Sbjct: 6 TFSSFSLDSTLLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQ 65
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
+L + K +L ALVL PTREL QQV+ + + + +++ S+L
Sbjct: 66 QLISVQPCKPEL--RALVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISEL 123
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
+ + DI+IATPG + L T +S S S+ ++ LV DEAD +L G+++++ ++
Sbjct: 124 KVGV----DILIATPGRLLDLLRT---ESVSLSN-IETLVFDEADRMLDMGFKEEIDQIT 175
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
+P+ Q LL SAT + D+ K+ K IL P ++ + E D +V+Q + +
Sbjct: 176 QYLPKTKQTLLFSATFADDIYKMSKNILVEPKMVEIDEKNKAAD-----DVEQL-VYGVD 229
Query: 267 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
D+ + + L K+ L+FT T A L + K G+KS ++ + Q +R L
Sbjct: 230 ADRKRELTSFLIGSRNWKQVLVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKAL 289
Query: 327 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 386
EF G LIATD RGID K +
Sbjct: 290 HEFKEGKVRALIATD---------------------------------VAARGIDIKGLS 316
Query: 387 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
VIN+E+P NA YVHRIGRT RA N+G +VSLVSP E + I+ +
Sbjct: 317 HVINYELPYNAEDYVHRIGRTARAGNSGLAVSLVSPGEEWLLTAIEELL 365
>gi|313222268|emb|CBY39229.1| unnamed protein product [Oikopleura dioica]
Length = 324
Score = 195 bits (496), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 126/335 (37%), Positives = 201/335 (60%), Gaps = 30/335 (8%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
GLD R++ + G ++PT IQ+A +P+ L+GKD++A+A+TGSGKT AYL+P++ R+ +
Sbjct: 5 FGLDPRILSGIAALGWKEPTEIQEAGLPIALKGKDILAKARTGSGKTGAYLIPIVQRILH 64
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPA-SDLRAA 149
+S + AL++ PTRELC Q+ + V L C V + +L S + +D+ A+
Sbjct: 65 IASTR------ALIIGPTRELCSQIEAVVRELCVKCLDVVS--IYELGSEVETEADISAS 116
Query: 150 LAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVI 209
IVI TPG + L + + S ++ L ++VLDEADLL +G + + + + +
Sbjct: 117 ------IVIGTPGRILNALKS---ERLSLTE-LSVMVLDEADLLFGFGNDKMVTEIVSHL 166
Query: 210 PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIP--KNVQQFWISCSER 267
P Q LMSAT S V+K+KKL L NP L L D +P + +QQ+ I+ +E
Sbjct: 167 PGTQQSFLMSATLSEQVEKIKKLTLRNPVTLKL------DDSSLPNAETLQQYQINLNED 220
Query: 268 -DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
+K L IL+ LKL +V+ K+L+F + ++LKLFL++FGI S +L++EL SR + +
Sbjct: 221 FEKYLVILSFLKLRIVRGKSLVFACGTNRCYKLKLFLKQFGIPSVVLSSELAAASRHNAV 280
Query: 327 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRK 361
++FN G FD +IA D Q ++ +EG H ++K
Sbjct: 281 QQFNKGKFDVMIAND--QVDLDEEIEEGEHTKAKK 313
>gi|291001041|ref|XP_002683087.1| DEAD-box ATP-dependent RNA helicase [Naegleria gruberi]
gi|284096716|gb|EFC50343.1| DEAD-box ATP-dependent RNA helicase [Naegleria gruberi]
Length = 887
Score = 195 bits (496), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 141/420 (33%), Positives = 210/420 (50%), Gaps = 53/420 (12%)
Query: 17 EEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGK 76
E A+ E KSF ++ L L+ A+ +KG + PT IQ IPL+L+G+D+ A A TGSGK
Sbjct: 260 EAPADIEVSKSFNDMNLSRPLLKAIYEKGYEHPTPIQSRCIPLLLKGRDICASAMTGSGK 319
Query: 77 TFAYLLPLLHR-LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVV 135
T A++LP L R L+ + S K L A L+PTREL Q Y + ++ ++
Sbjct: 320 TAAFILPTLERLLYRDRSRKETLVVA---LLPTRELAAQCYEDCSHFLQY----TDIRCC 372
Query: 136 QLT-SSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLL 193
+T ++ L P+I+IATPG + L L S +F D +++L+LDEAD L
Sbjct: 373 LITGGNLKIQKQIQVLQSKPEIIIATPGRVVDHL----LNSPNFRLDEVEVLILDEADRL 428
Query: 194 LSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVI 253
L G+E +K + IP Q +L SAT + D+++L KL L NP ++ D + V
Sbjct: 429 LELGFEPQIKTILDHIPTARQTMLFSATMTDDIEQLVKLSLKNPIRVSC----DSRTGVA 484
Query: 254 PKNVQQFWISCSERDKLLYILTLLKL--ELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 311
Q+F + + ++ LL L + +IF NT M +LK+ L G+K +
Sbjct: 485 SGLTQEFIKLADDENIIMKQAILLSLCTRSFPSEVIIFCNTKSMVRKLKMLLFLKGLKVS 544
Query: 312 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLD 371
L++ L Q RL L +F + D+L+ TD
Sbjct: 545 ELSSSLTQAVRLKELYKFASHETDFLVCTD------------------------------ 574
Query: 372 SEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 431
RG+D K V TVINF+MP N Y+HR+GRT RA +G +VS+ S + I +I
Sbjct: 575 ---VASRGLDIKGVKTVINFDMPLNLKTYIHRVGRTARAGASGVAVSMSSESSIAILRKI 631
>gi|67967779|dbj|BAE00372.1| unnamed protein product [Macaca fascicularis]
Length = 764
Score = 195 bits (496), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 143/417 (34%), Positives = 199/417 (47%), Gaps = 49/417 (11%)
Query: 17 EEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGK 76
E+ ++ +E SF+++ L L+ A+ G ++PT IQ+A IP+ L GKD+ A A TG+GK
Sbjct: 177 EDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTSIQKACIPVGLLGKDICACAATGTGK 236
Query: 77 TFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQ 136
T A+ LP+L RL + P+ LVLVPTREL QV+S L + C L V
Sbjct: 237 TAAFALPVLERLIYK--PRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGG 294
Query: 137 LTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLS 195
L + LRAA PDI+IATPG + L SF S+++L+LDEAD +L
Sbjct: 295 LDVKSQEAALRAA----PDILIATPGRLIDHLHN----CPSFHLSSIEVLILDEADRMLD 346
Query: 196 YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK 255
+E+ +K + + Q +L SAT + +V L + L NP + + D V P
Sbjct: 347 EYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTD----VAPF 402
Query: 256 NVQQFW-ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILN 314
Q+F I + I+ L ++FT T A R+ + L G++ L+
Sbjct: 403 LRQEFIRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELH 462
Query: 315 AELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEF 374
L Q RL L F D L+ATD
Sbjct: 463 GNLSQTQRLEALRRFKDEQIDILVATD--------------------------------- 489
Query: 375 GVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 431
RG+D + V TVINF MP YVHR+GRT RA G SVSLV DE K+ +EI
Sbjct: 490 VAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEI 546
>gi|392578431|gb|EIW71559.1| hypothetical protein TREMEDRAFT_27480 [Tremella mesenterica DSM
1558]
Length = 786
Score = 195 bits (496), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 138/406 (33%), Positives = 201/406 (49%), Gaps = 45/406 (11%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF + L L+ AL + PT IQ +IPL L G+D++ A TGSGKT A+++P+L
Sbjct: 207 SFSTMNLSRPLLRALTSLNLITPTPIQARAIPLALLGRDILGSAVTGSGKTAAFMVPILE 266
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
RL + A L+L PTREL V E +G + ++ L + +
Sbjct: 267 RLTYRERGRGGQACRVLILCPTRELA--VQCEEFGKKLSTQGGLNIRFALLVGGLSLNAQ 324
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKAL 205
L PDI+IATPG + L+ + SF+ +L +LV+DEAD +L G+ D+L +
Sbjct: 325 AQNLRTLPDILIATPGRLIDHLT----NTPSFTLSALDVLVIDEADRMLEAGFTDELNEI 380
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
PRG Q +L SAT + VD+L KL L P L + D K Q+F S
Sbjct: 381 VRSCPRGRQTMLFSATMTDSVDELVKLSLDKPIRLFV----DPKRNTAIGLTQEFVRIKS 436
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
+ + +L L K V+++ +IF + +A ++++ G+K+A L+ L Q RLH
Sbjct: 437 DDTRSPSLLALCK-RTVRERCIIFFRSKALAHQMRVVFGLCGLKAAELHGNLSQEQRLHA 495
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
LEEF G DYL+ATD L S RG+D K V
Sbjct: 496 LEEFKLGKVDYLLATD----------------------------LAS-----RGLDIKGV 522
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 431
TVIN++MP A Y HR+GRT RA G S++LV + K+ + +
Sbjct: 523 ETVINYDMPGQLAQYTHRVGRTARAGRKGRSITLVGEADRKLLKAV 568
>gi|163751114|ref|ZP_02158344.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
benthica KT99]
gi|161329070|gb|EDQ00142.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
benthica KT99]
Length = 445
Score = 195 bits (496), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 138/410 (33%), Positives = 215/410 (52%), Gaps = 49/410 (11%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F + LD RL++ L+ GI+ PT IQQ +IP+ L GKD++A +KTGSGKT A+LLP + R
Sbjct: 3 FTDFSLDKRLLNTLDHMGIETPTEIQQQAIPVGLSGKDLMASSKTGSGKTLAFLLPAMQR 62
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+ + + SK P L+L+PTREL QVY ++ L+ Q K +++ +D
Sbjct: 63 IIS-TRALSKRDPRVLILLPTRELANQVYGQLRLLV----ANTQYKAMKILGGENFNDQA 117
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS- 206
LA P V+ATPG + L+ Q + L++L+LDEAD +L G+ + LKA++
Sbjct: 118 KLLARDPHFVVATPGRLADHLA----QHHLHLNGLELLILDEADRMLDLGFAEQLKAINK 173
Query: 207 AVIPRGCQCLLMSATSSSD-VDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
A + Q L+ SAT + + +L +P + + G+++++ I Q+ +++
Sbjct: 174 AADHKRRQTLMFSATLDHGLISNIAAELLKSPEHVDIG-AGNIENQDI---TQRIYLADH 229
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
K + ++L E K+ +IFT T D RL L G K+A L+ L Q++R I
Sbjct: 230 LDHKEALLDSILNNE-THKQIIIFTATRDDTDRLATKLAASGHKTASLSGNLKQSARNQI 288
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
+++F+ GL L+ TD RG+D NV
Sbjct: 289 MDQFSRGLQKILVTTDIAS---------------------------------RGLDLLNV 315
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
VINF+MP+ A YVHRIGRTGRA G ++S V P + F++I+ F+
Sbjct: 316 SLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISFVGPKDWLSFKQIQVFL 365
>gi|312883216|ref|ZP_07742944.1| ATP-dependent RNA helicase RhlE [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309369079|gb|EFP96603.1| ATP-dependent RNA helicase RhlE [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 399
Score = 195 bits (496), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 141/411 (34%), Positives = 212/411 (51%), Gaps = 50/411 (12%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF +LGL+ L+ A+++ G QKPT IQ +IP L G+D++A A+TG+GKT +++LP+L
Sbjct: 2 SFSKLGLEQPLIDAIHELGYQKPTHIQTQAIPSALSGQDLLAAAQTGTGKTASFVLPILQ 61
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
+L N + K AL+L PTREL QV ++ + + + LK + L +
Sbjct: 62 KL-NAGQTQKKKRARALILTPTRELALQVEEKIQSYGKY----LSLKSIALYGGVDDKAQ 116
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
+ AL DIV+ATPG + + + + ++ILVLDEAD +L G+ + + +
Sbjct: 117 KQALIDGIDIVVATPGRLLDLYGKRAI----YFEEIEILVLDEADKMLDMGFIEGINKIL 172
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
+PR Q LL SAT S+ V L K ++NPY E+ ++ KN++Q W+ +
Sbjct: 173 DRLPRDIQNLLFSATLSNKVRDLAKTAVYNPY-----EISIAANQASKKNIEQ-WLITVD 226
Query: 267 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
+DK +L+ L +ALIF T A +L LEK GI + ++ Q R +L
Sbjct: 227 KDKKSALLSHLIQHNNWDQALIFIETKHGAAKLASQLEKRGIYAEAFHSGRSQAIRSKLL 286
Query: 327 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGV-VRGIDFKNV 385
++F +G YLIAT GV RGID + +
Sbjct: 287 DDFKSGEIKYLIAT----------------------------------GVGARGIDIEGL 312
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
VIN+++P A YVHRIGRTGRA G ++S VS D K I+S +G
Sbjct: 313 SRVINYDLPFPADEYVHRIGRTGRADANGEAISFVSKDNFKNLCMIESRLG 363
>gi|168010159|ref|XP_001757772.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691048|gb|EDQ77412.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 753
Score = 195 bits (496), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 163/500 (32%), Positives = 229/500 (45%), Gaps = 81/500 (16%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F EL L L+ A G ++PT IQ A IPL L G+D+ A TGSGKT A+ LP+L R
Sbjct: 130 FGELNLSRPLIRACETLGYREPTPIQAACIPLALTGRDICGSAVTGSGKTGAFALPMLER 189
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
L P+ A L+L PTREL QV+S V L + + V L+S + LR
Sbjct: 190 LLYR--PRRIPAIRCLILTPTRELAVQVHSMVQKLAQFTDVTSAIVVGGLSSKVQEVALR 247
Query: 148 AALAGPPDIVIATPGCM----PKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLK 203
A PDIV+ATPG M LS G+ + L ILVLDEAD LL G+ ++
Sbjct: 248 AR----PDIVVATPGRMLDHLQNSLSVGL-------EDLSILVLDEADRLLELGFTQEVH 296
Query: 204 ALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL-PEVG---DVKDEVIPKNVQQ 259
L P+ Q +L SAT + +V L L L++P L+ P + +EV+
Sbjct: 297 ELVRQCPKRRQTMLFSATMTEEVSNLINLSLNSPVRLSADPSTKRPVSLSEEVVKIR--- 353
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
E DK +L L ++K +IF+ A RLK+ G+K+A L+ L Q
Sbjct: 354 ---PALENDKEAVLLALC-TRTFKEKVIIFSGMKVEAHRLKILFGLAGLKAAELHGNLTQ 409
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
RL LE F D+LIATD RG
Sbjct: 410 AMRLDALESFRKQEVDFLIATDV---------------------------------AARG 436
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD- 438
+D V TVINF P + YVHR+GRT RA G +V+ V+ E + + I G
Sbjct: 437 LDIVGVETVINFHCPSDITVYVHRVGRTARAGRKGCAVTFVTERERSLLKAIAKKAGSQL 496
Query: 439 ENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHF 498
+N +AP ++ + R + E++ V ++ E + LR KA
Sbjct: 497 QNRQ---VAP------TSIYNWRSKIEEMEDGVREVMQAERYEKALR---------KAEM 538
Query: 499 EVNPKDLDLLKHDKDLSKKP 518
EVN K +++ H+K++ +P
Sbjct: 539 EVN-KAQNMMDHEKEIFSRP 557
>gi|421498297|ref|ZP_15945417.1| ATP-dependent RNA helicase RhlE [Aeromonas media WS]
gi|407182701|gb|EKE56638.1| ATP-dependent RNA helicase RhlE [Aeromonas media WS]
Length = 417
Score = 195 bits (496), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 145/419 (34%), Positives = 211/419 (50%), Gaps = 67/419 (15%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF EL L RL L + G PT IQ ++IP+IL G+D++A A+TG+GKT A++LPLL
Sbjct: 5 SFAELALSPRLQQTLCELGYAAPTPIQASAIPVILAGRDLLAGAQTGTGKTAAFVLPLLE 64
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
+L + +S ALVLVPTREL QV+ V + +G LTS++ +
Sbjct: 65 QLMQQPQGESPRPIRALVLVPTRELAVQVFESV---VRYGQG------TDLTSALVYGGV 115
Query: 147 RA-----ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDD 201
AL D++IATPG + L G L+ S S LV DEAD +L G+ D+
Sbjct: 116 SIAAQVEALKNGVDLLIATPGRLLDHLRQGALRLGSLSH----LVFDEADRMLDMGFMDE 171
Query: 202 LKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN----- 256
+KAL IP Q LL SAT ++ L K++L +P ++ EV P+N
Sbjct: 172 IKALLKQIPADRQTLLFSATCDDNLFALSKVLLRDPELI----------EVAPRNTTAAE 221
Query: 257 VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAE 316
V+Q + KL + +L ++ ALIF+ T A +L L K GI + + +
Sbjct: 222 VEQRVYAVDGDRKLALVEHMLTVK-GWAPALIFSRTRQGADKLAQQLGKAGINALAFHGD 280
Query: 317 LPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGV 376
L Q++R +L EF AG L+ATD
Sbjct: 281 LSQSAREKVLLEFRAGTLQALVATDVA--------------------------------- 307
Query: 377 VRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
RG+D +++ VIN E P A YVHRIGRTGRA N G +++L SP++ + E++++ +
Sbjct: 308 ARGLDISDLNYVINLEFPFVAEDYVHRIGRTGRAGNKGLAITLFSPEDAPLLEKVEAVL 366
>gi|442611149|ref|ZP_21025855.1| ATP-dependent RNA helicase VCA0061 [Pseudoalteromonas luteoviolacea
B = ATCC 29581]
gi|441747077|emb|CCQ11917.1| ATP-dependent RNA helicase VCA0061 [Pseudoalteromonas luteoviolacea
B = ATCC 29581]
Length = 444
Score = 195 bits (495), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 139/412 (33%), Positives = 208/412 (50%), Gaps = 49/412 (11%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F +LG+D RL L+ +GI +PT IQ +IP L G DV A++KTGSGKT A+LLP + R
Sbjct: 3 FTDLGIDNRLAKQLSHQGIVEPTEIQARAIPTALAGHDVFAQSKTGSGKTLAFLLPAVQR 62
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+ + + SK P LV+ PTREL QVY++ LI L V ++ +D
Sbjct: 63 VIKQKA-LSKRDPRVLVVTPTRELANQVYAQCRMLI----ASHTLSVTKILGGENFNDQV 117
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS- 206
ALA P VI TPG + LS +Q + L++L+ DEAD +L G++ L A++
Sbjct: 118 KALAKNPHFVIGTPGRIADHLSQRSMQLQ----GLEMLIFDEADRMLDLGFKAQLDAINE 173
Query: 207 AVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
A R Q LL SAT ++V + +L P + L + + +++ Q +++
Sbjct: 174 AADHRLRQTLLFSATLDHAEVGVTSRNLLKAPKSIMLSDAHEKHEDI----TQTLYLADH 229
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
K + +K E V + +IFT T RL L + + +A L ++PQN RL I
Sbjct: 230 LDHKQALLTHFMKSEAV-GQCIIFTATRSDTSRLSDLLNEQQLNAAALAGDMPQNKRLEI 288
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
++ F+ G F L+ TD RG+D +V
Sbjct: 289 MDAFSRGQFKVLVTTDVAS---------------------------------RGLDLLSV 315
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
VINF++P++A YVHRIGRTGRA G ++S V P + K + I+S++ D
Sbjct: 316 THVINFDLPKHAEEYVHRIGRTGRAGFKGTAISFVGPKDWKSYLAIQSYLKD 367
>gi|156976352|ref|YP_001447258.1| ATP-dependent RNA helicase [Vibrio harveyi ATCC BAA-1116]
gi|156527946|gb|ABU73031.1| hypothetical protein VIBHAR_05125 [Vibrio harveyi ATCC BAA-1116]
Length = 447
Score = 195 bits (495), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 138/420 (32%), Positives = 210/420 (50%), Gaps = 49/420 (11%)
Query: 23 EEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLL 82
E F++LGLD RL+ L +K T IQQ +IP+ + GKD++A +KTGSGKT A++L
Sbjct: 2 ENTLQFKDLGLDNRLLKNLKHYDFKKATDIQQQAIPVAIAGKDLLASSKTGSGKTLAFVL 61
Query: 83 PLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMP 142
P+LH+ S +K P A++L PTREL +QVY E+ +++ G + +
Sbjct: 62 PMLHKSLKTKSFSAK-DPRAVILAPTRELAKQVYGELRSML----GGLTYDAALILGGEN 116
Query: 143 ASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 202
+D AL P ++ATPG + L L F D L+ LVLDEAD +L G+ +L
Sbjct: 117 FNDQVKALRRYPKFIVATPGRLADHLEHRSL----FLDGLETLVLDEADRMLDLGFAPEL 172
Query: 203 KALS-AVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF 260
+ + A R Q L+ SAT ++V+ + +L+ P + + V +E Q+F
Sbjct: 173 RRIHKAAKHRRRQTLMFSATLDHAEVNDIASEMLNAPKRIAI----GVSNEEHKDITQKF 228
Query: 261 WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 320
++ C D IL + E ++ +IFT T D RL L + +K+ L+ L Q
Sbjct: 229 YL-CDHLDHKEAILERVLEEAEYRQVIIFTATRDDTERLTNKLNEKKLKAVALSGNLNQT 287
Query: 321 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 380
R I+ +F +F L+ TD RG+
Sbjct: 288 QRNTIMSQFERAVFKILVTTDVAS---------------------------------RGL 314
Query: 381 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDEN 440
D V VINF+MP++ YVHR+GRTGRA N G +VSLV P + F+ +++++ D N
Sbjct: 315 DIATVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAVSLVGPKDWDSFKRVETYLQQDLN 374
>gi|109091647|ref|XP_001099400.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Macaca
mulatta]
gi|355563050|gb|EHH19612.1| Putative ATP-dependent RNA helicase DDX27 [Macaca mulatta]
gi|355784407|gb|EHH65258.1| Putative ATP-dependent RNA helicase DDX27 [Macaca fascicularis]
Length = 763
Score = 195 bits (495), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 142/417 (34%), Positives = 200/417 (47%), Gaps = 49/417 (11%)
Query: 17 EEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGK 76
E+ ++ +E SF+++ L L+ A+ G ++PT IQ+A IP+ L GKD+ A A TG+GK
Sbjct: 176 EDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGK 235
Query: 77 TFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQ 136
T A+ LP+L RL + P+ LVLVPTREL QV+S L + C L V
Sbjct: 236 TAAFALPVLERLIYK--PRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGG 293
Query: 137 LTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLS 195
L + LRAA PDI+IATPG + L SF S+++L+LDEAD +L
Sbjct: 294 LDVKSQEAALRAA----PDILIATPGRLIDHLHN----CPSFHLSSIEVLILDEADRMLD 345
Query: 196 YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK 255
+E+ +K + + Q +L SAT + +V L + L NP + + + +V P
Sbjct: 346 EYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFV----NSNTDVAPF 401
Query: 256 NVQQFW-ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILN 314
Q+F I + I+ L ++FT T A R+ + L G++ L+
Sbjct: 402 LRQEFIRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELH 461
Query: 315 AELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEF 374
L Q RL L F D L+ATD
Sbjct: 462 GNLSQTQRLEALRRFKDEQIDILVATD--------------------------------- 488
Query: 375 GVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 431
RG+D + V TVINF MP YVHR+GRT RA G SVSLV DE K+ +EI
Sbjct: 489 VAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEI 545
>gi|119596074|gb|EAW75668.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27, isoform CRA_d [Homo
sapiens]
Length = 763
Score = 195 bits (495), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 142/417 (34%), Positives = 200/417 (47%), Gaps = 49/417 (11%)
Query: 17 EEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGK 76
E+ ++ +E SF+++ L L+ A+ G ++PT IQ+A IP+ L GKD+ A A TG+GK
Sbjct: 209 EDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGK 268
Query: 77 TFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQ 136
T A+ LP+L RL + P+ LVLVPTREL QV+S L + C L V
Sbjct: 269 TAAFALPVLERLIYK--PRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGG 326
Query: 137 LTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLS 195
L + LRAA PDI+IATPG + L SF S+++L+LDEAD +L
Sbjct: 327 LDVKSQEAALRAA----PDILIATPGRLIDHLHN----CPSFHLSSIEVLILDEADRMLD 378
Query: 196 YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK 255
+E+ +K + + Q +L SAT + +V L + L NP + + + +V P
Sbjct: 379 EYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFV----NSNTDVAPF 434
Query: 256 NVQQFW-ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILN 314
Q+F I + I+ L ++FT T A R+ + L G++ L+
Sbjct: 435 LRQEFIRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELH 494
Query: 315 AELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEF 374
L Q RL L F D L+ATD
Sbjct: 495 GNLSQTQRLEALRRFKDEQIDILVATD--------------------------------- 521
Query: 375 GVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 431
RG+D + V TVINF MP YVHR+GRT RA G SVSLV DE K+ +EI
Sbjct: 522 VAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEI 578
>gi|40225538|gb|AAH11927.2| DDX27 protein, partial [Homo sapiens]
gi|48257213|gb|AAH16060.2| DDX27 protein, partial [Homo sapiens]
Length = 767
Score = 195 bits (495), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 143/417 (34%), Positives = 199/417 (47%), Gaps = 49/417 (11%)
Query: 17 EEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGK 76
E+ ++ +E SF+++ L L+ A+ G ++PT IQ+A IP+ L GKD+ A A TG+GK
Sbjct: 180 EDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGK 239
Query: 77 TFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQ 136
T A+ LP+L RL + P+ LVLVPTREL QV+S L + C L V
Sbjct: 240 TAAFALPVLERLIYK--PRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGG 297
Query: 137 LTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLS 195
L + LRAA PDI+IATPG + L SF S+++L+LDEAD +L
Sbjct: 298 LDVKSQEAALRAA----PDILIATPGRLIDHLHN----CPSFHLSSIEVLILDEADRMLD 349
Query: 196 YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK 255
+E+ +K + + Q +L SAT + +V L + L NP + + D V P
Sbjct: 350 EYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTD----VAPF 405
Query: 256 NVQQFW-ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILN 314
Q+F I + I+ L ++FT T A R+ + L G++ L+
Sbjct: 406 LRQEFIRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELH 465
Query: 315 AELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEF 374
L Q RL L F D L+ATD
Sbjct: 466 GNLSQTQRLEALRRFKDEQIDILVATD--------------------------------- 492
Query: 375 GVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 431
RG+D + V TVINF MP YVHR+GRT RA G SVSLV DE K+ +EI
Sbjct: 493 VAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEI 549
>gi|189342956|gb|ACD91989.1| DEAD box polypeptide 27 [Homo sapiens]
gi|313883628|gb|ADR83300.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [synthetic construct]
Length = 765
Score = 195 bits (495), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 143/417 (34%), Positives = 199/417 (47%), Gaps = 49/417 (11%)
Query: 17 EEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGK 76
E+ ++ +E SF+++ L L+ A+ G ++PT IQ+A IP+ L GKD+ A A TG+GK
Sbjct: 178 EDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGK 237
Query: 77 TFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQ 136
T A+ LP+L RL + P+ LVLVPTREL QV+S L + C L V
Sbjct: 238 TAAFALPVLERLIYK--PRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGG 295
Query: 137 LTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLS 195
L + LRAA PDI+IATPG + L SF S+++L+LDEAD +L
Sbjct: 296 LDVKSQEAALRAA----PDILIATPGRLIDHLHN----CPSFHLSSIEVLILDEADRMLD 347
Query: 196 YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK 255
+E+ +K + + Q +L SAT + +V L + L NP + + D V P
Sbjct: 348 EYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTD----VAPF 403
Query: 256 NVQQFW-ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILN 314
Q+F I + I+ L ++FT T A R+ + L G++ L+
Sbjct: 404 LRQEFIRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELH 463
Query: 315 AELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEF 374
L Q RL L F D L+ATD
Sbjct: 464 GNLSQTQRLEALRRFKDEQIDILVATD--------------------------------- 490
Query: 375 GVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 431
RG+D + V TVINF MP YVHR+GRT RA G SVSLV DE K+ +EI
Sbjct: 491 VAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEI 547
>gi|221043088|dbj|BAH13221.1| unnamed protein product [Homo sapiens]
Length = 765
Score = 195 bits (495), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 142/417 (34%), Positives = 200/417 (47%), Gaps = 49/417 (11%)
Query: 17 EEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGK 76
E+ ++ +E SF+++ L L+ A+ G ++PT IQ+A IP+ L GKD+ A A TG+GK
Sbjct: 178 EDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGK 237
Query: 77 TFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQ 136
T A+ LP+L RL + P+ LVLVPTREL QV+S L + C L V
Sbjct: 238 TAAFALPVLERLIYK--PRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGG 295
Query: 137 LTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLS 195
L + LRAA PDI+IATPG + L SF S+++L+LDEAD +L
Sbjct: 296 LDVKSQEAALRAA----PDILIATPGRLIDHLHN----CPSFHLSSIEVLILDEADRMLD 347
Query: 196 YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK 255
+E+ +K + + Q +L SAT + +V L + L NP + + + +V P
Sbjct: 348 EYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFV----NSNTDVAPF 403
Query: 256 NVQQFW-ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILN 314
Q+F I + I+ L ++FT T A R+ + L G++ L+
Sbjct: 404 LRQEFIRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELH 463
Query: 315 AELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEF 374
L Q RL L F D L+ATD
Sbjct: 464 GNLSQTQRLEALRRFKDEQIDILVATD--------------------------------- 490
Query: 375 GVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 431
RG+D + V TVINF MP YVHR+GRT RA G SVSLV DE K+ +EI
Sbjct: 491 VAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEI 547
>gi|329906289|ref|ZP_08274385.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
gi|327547309|gb|EGF32148.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
Length = 504
Score = 195 bits (495), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 136/420 (32%), Positives = 217/420 (51%), Gaps = 53/420 (12%)
Query: 21 EAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAY 80
++E FE+ GL ++ AL +G PT IQ A+IP++L+G+DV+ A+TG+GKT +
Sbjct: 11 DSEPALRFEDFGLSAEILRALADQGYDHPTPIQAAAIPVVLQGRDVMGAAQTGTGKTAGF 70
Query: 81 LLPLLHRLF----NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQ 136
LP++ L N +SP ++ AL+L PTREL QV V A C+ L+
Sbjct: 71 SLPIIQLLLANASNSASP-ARHPVRALILTPTRELADQVAENVKA---YCR-HTPLRSTV 125
Query: 137 LTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS-LKILVLDEADLLLS 195
+ M + AAL +IVIATPG + +Q K+ + S +ILV+DEAD +L
Sbjct: 126 VFGGMDMAPQTAALRAGVEIVIATPGRL-----LDHVQQKTLNLSQTQILVMDEADRMLD 180
Query: 196 YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK 255
G+ DL+ + ++P+ Q L+ SAT S ++ KL L NP + + D V +
Sbjct: 181 MGFLPDLQRIINLLPKKRQNLMFSATFSGEIKKLASSFLDNPVTIEVARSNQTADRVT-Q 239
Query: 256 NVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNA 315
V + ++RD + +++ +L K+ L+F+NT A RL LEK G+K++ ++
Sbjct: 240 VVYKVDSDDAKRDIVAHLIRGRQL----KQVLVFSNTKIGASRLARELEKGGVKASAIHG 295
Query: 316 ELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFG 375
+ Q+ R+ LE F G D L+ATD
Sbjct: 296 DKTQSERMAALEAFKGGEIDVLVATD---------------------------------V 322
Query: 376 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
RG+D ++ VIN+++P NA YVHRIGRTGRA +G ++SL + + ++ +I+ +
Sbjct: 323 AARGLDISDLPCVINYDLPYNAEDYVHRIGRTGRAGASGDAISLFTTKDERLLLDIEKLI 382
>gi|404258993|ref|ZP_10962307.1| putative ATP-dependent RNA helicase [Gordonia namibiensis NBRC
108229]
gi|403402387|dbj|GAC00717.1| putative ATP-dependent RNA helicase [Gordonia namibiensis NBRC
108229]
Length = 540
Score = 195 bits (495), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 146/450 (32%), Positives = 213/450 (47%), Gaps = 58/450 (12%)
Query: 21 EAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAY 80
E +F ELG+D R+V AL + G + IQ+ ++PL + G D++ +A+TG GKT+ +
Sbjct: 13 ETHTAPTFAELGVDERIVSALTEDGKTQTFAIQELTLPLAMGGDDLIGQARTGMGKTYGF 72
Query: 81 LLPLLHRLFN-ESSPKSKL--APAALVLVPTRELCQQVYS--EVMAL---IELCKGQVQ- 131
+PLLHRL N E+S L P AL++VPTRELC QV S E+ A + L G +
Sbjct: 73 GIPLLHRLANAEASGVRPLDNTPRALIIVPTRELCVQVTSDLEIAAKNTDVTLADGTNRM 132
Query: 132 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 191
LK+ + P A L D+V+ TPG + G L S ILVLDEAD
Sbjct: 133 LKITSIYGGRPYEAQIAELQSGVDVVVGTPGRLLDLAQQGHLVLGKVS----ILVLDEAD 188
Query: 192 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 251
+L G+ D++ + A +P Q +L SAT + L + LH P T + D
Sbjct: 189 EMLDLGFLPDIERIMAALPTPRQTMLFSATMPGPIVTLARTFLHRP---THIRAENANDS 245
Query: 252 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 311
+ +Q+ DK + +L+ E + +IFT T A ++ L + G K
Sbjct: 246 AVHDRTKQYAYRAHALDKAELVARILQAE-GRGATMIFTRTKRTAQKVADDLAERGFKVG 304
Query: 312 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLD 371
++ +L Q +R L F G D L+ATD
Sbjct: 305 AVHGDLGQVAREKALGRFRDGTIDVLVATDV----------------------------- 335
Query: 372 SEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 431
RGID +V VIN++ P++ YVHRIGRTGRA TG +V+LV DE+ +E I
Sbjct: 336 ----AARGIDIDDVTHVINYQCPEDDKTYVHRIGRTGRAGRTGIAVTLVDWDELHRWELI 391
Query: 432 KSFVGDDENEDSNIIAPFPLLAQNAVESLR 461
+G + P P+ + E+LR
Sbjct: 392 DKALG--------LGIPEPVETYSTSENLR 413
>gi|344279740|ref|XP_003411645.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
DDX27-like [Loxodonta africana]
Length = 822
Score = 195 bits (495), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 142/417 (34%), Positives = 199/417 (47%), Gaps = 49/417 (11%)
Query: 17 EEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGK 76
E+ ++ +E SF+++ L L+ A+ G ++PT IQ+A IP+ L GKD+ A A TG+GK
Sbjct: 235 EDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGK 294
Query: 77 TFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQ 136
T A+ LP+L RL + P+ LVLVPTREL QV+S L + C L V
Sbjct: 295 TAAFALPVLERLIYK--PRQAAVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGG 352
Query: 137 LTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLS 195
L + LRAA PDI+IATPG + L SF S+++L+LDEAD +L
Sbjct: 353 LDVKSQEAALRAA----PDILIATPGRLIDHLHN----CPSFHLSSIEVLILDEADRMLD 404
Query: 196 YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK 255
+E+ +K + + Q +L SAT + +V L + L NP + + D V P
Sbjct: 405 EYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTD----VAPF 460
Query: 256 NVQQFW-ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILN 314
Q+F I + I+ L ++FT T A R+ + L G++ L+
Sbjct: 461 LRQEFIRIRPNREGDREAIVAALLTRTFSDHVMLFTQTKKQAHRMHILLGLMGLQVGELH 520
Query: 315 AELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEF 374
L Q RL L F D L+ATD
Sbjct: 521 GNLSQTQRLEALRRFKDEQIDILVATD--------------------------------- 547
Query: 375 GVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 431
RG+D + V TVINF MP YVHR+GRT RA G SVSLV +E K+ +EI
Sbjct: 548 VAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEI 604
>gi|398406547|ref|XP_003854739.1| RNA-dependent ATPase [Zymoseptoria tritici IPO323]
gi|339474623|gb|EGP89715.1| hypothetical protein MYCGRDRAFT_84402 [Zymoseptoria tritici IPO323]
Length = 446
Score = 195 bits (495), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 132/413 (31%), Positives = 207/413 (50%), Gaps = 52/413 (12%)
Query: 25 EKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPL 84
+K+F +LG+ L A G KPT IQ+ +IP+ LEGKD++ A+TGSGKT A+ LP+
Sbjct: 35 DKTFADLGVVDSLCEACTALGFTKPTAIQREAIPIALEGKDIIGLAETGSGKTAAFALPI 94
Query: 85 LHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
L L ++ P LVL PTREL Q+ + AL L + ++ + M
Sbjct: 95 LQELLDKPQPMF-----GLVLAPTRELAYQISQQFEALGSL----ISVRCAVIVGGMDMV 145
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLK 203
ALA P IV+ATPG + L +K FS LK LV+DEAD LL + L
Sbjct: 146 PQAIALAKKPHIVVATPGRLLDHLE----NTKGFSLRQLKYLVMDEADRLLDLDFGPILD 201
Query: 204 ALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWIS 263
+ V+PR + +L SAT S+ ++ L + L P +++ KN+ Q +I
Sbjct: 202 KIFQVLPRERRTMLFSATMSTKLNNLTRAALQQPVKVSISS----SSYQTVKNLMQRYIF 257
Query: 264 CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+ K +Y++ LL E + ++FT TI+ R+ L G + L+ ++ Q++RL
Sbjct: 258 IPHKFKDIYLVYLLN-EFAGQTCIVFTRTINETARIAFLLRALGRSAIPLHGQMNQSARL 316
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
L +F G D L+ATD RG+D
Sbjct: 317 GALNKFRGGHRDILVATDVA---------------------------------ARGLDIP 343
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
+V V+NF++P ++ YVHR+GRT RA +G ++S+V+ +++I++ I+ +G
Sbjct: 344 SVDLVLNFDLPPDSKTYVHRVGRTARAGKSGVAISVVTQYDIEIYQRIEKALG 396
>gi|297707298|ref|XP_002830447.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 isoform 1
[Pongo abelii]
Length = 765
Score = 195 bits (495), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 142/417 (34%), Positives = 200/417 (47%), Gaps = 49/417 (11%)
Query: 17 EEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGK 76
E+ ++ +E SF+++ L L+ A+ G ++PT IQ+A IP+ L GKD+ A A TG+GK
Sbjct: 178 EDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGK 237
Query: 77 TFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQ 136
T A+ LP+L RL + P+ LVLVPTREL QV+S L + C L V
Sbjct: 238 TAAFALPVLERLIYK--PRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGG 295
Query: 137 LTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLS 195
L + LRAA PDI+IATPG + L SF S+++L+LDEAD +L
Sbjct: 296 LDVKSQEAALRAA----PDILIATPGRLIDHLHN----CPSFHLSSIEVLILDEADRMLD 347
Query: 196 YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK 255
+E+ +K + + Q +L SAT + +V L + L NP + + + +V P
Sbjct: 348 EYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFV----NSNTDVAPF 403
Query: 256 NVQQFW-ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILN 314
Q+F I + I+ L ++FT T A R+ + L G++ L+
Sbjct: 404 LRQEFIRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELH 463
Query: 315 AELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEF 374
L Q RL L F D L+ATD
Sbjct: 464 GNLSQTQRLEALRRFKDEQIDILVATD--------------------------------- 490
Query: 375 GVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 431
RG+D + V TVINF MP YVHR+GRT RA G SVSLV DE K+ +EI
Sbjct: 491 VAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEI 547
>gi|32425487|gb|AAH09304.2| DDX27 protein, partial [Homo sapiens]
Length = 769
Score = 195 bits (495), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 142/417 (34%), Positives = 200/417 (47%), Gaps = 49/417 (11%)
Query: 17 EEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGK 76
E+ ++ +E SF+++ L L+ A+ G ++PT IQ+A IP+ L GKD+ A A TG+GK
Sbjct: 182 EDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGK 241
Query: 77 TFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQ 136
T A+ LP+L RL + P+ LVLVPTREL QV+S L + C L V
Sbjct: 242 TAAFALPVLERLIYK--PRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGG 299
Query: 137 LTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLS 195
L + LRAA PDI+IATPG + L SF S+++L+LDEAD +L
Sbjct: 300 LDVKSQEAALRAA----PDILIATPGRLIDHLHN----CPSFHLSSIEVLILDEADRMLD 351
Query: 196 YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK 255
+E+ +K + + Q +L SAT + +V L + L NP + + + +V P
Sbjct: 352 EYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFV----NSNTDVAPF 407
Query: 256 NVQQFW-ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILN 314
Q+F I + I+ L ++FT T A R+ + L G++ L+
Sbjct: 408 LRQEFIRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELH 467
Query: 315 AELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEF 374
L Q RL L F D L+ATD
Sbjct: 468 GNLSQTQRLEALRRFKDEQIDILVATD--------------------------------- 494
Query: 375 GVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 431
RG+D + V TVINF MP YVHR+GRT RA G SVSLV DE K+ +EI
Sbjct: 495 VAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEI 551
>gi|406868092|gb|EKD21129.1| ATP-dependent RNA helicase DRS1 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 820
Score = 195 bits (495), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 148/488 (30%), Positives = 239/488 (48%), Gaps = 63/488 (12%)
Query: 20 AEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFA 79
A+A +F+ LGL ++ L+ G PT IQ +IP+ L+GKDVV A TGSGKT A
Sbjct: 272 AKAATHATFQSLGLSRPILRGLSAVGFSAPTPIQAKTIPMALQGKDVVGGAVTGSGKTAA 331
Query: 80 YLLPLLHRLFN--ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQL 137
+++P+L RL + P S++A +L+PTREL Q ++ L + L V L
Sbjct: 332 FIVPVLERLLYRPKKVPTSRVA----ILMPTRELAIQCHAVATKLASHTDIKFCLAVGGL 387
Query: 138 TSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSY 196
+ + ++LR PD++IATPG + V SF+ D+L+ILVLDEAD +L
Sbjct: 388 SLKVQEAELRLR----PDVIIATPGRFIDHMRNSV----SFTVDTLEILVLDEADRMLEA 439
Query: 197 GYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN 256
G+ D+L + IP+ Q +L SAT SS VD L ++ L+ P L + D + + +
Sbjct: 440 GFADELNEILTTIPKSRQTMLFSATMSSSVDNLIRVGLNRPVRLLV----DAQKQTVGTL 495
Query: 257 VQQF--WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILN 314
VQ+F E ++ Y+L L + + ++F A R ++ G+K+ L+
Sbjct: 496 VQEFIRLRPGRETKRMGYLLYLC-ANIYTDRVIVFFRQKKEAHRARVIFGLSGLKATELH 554
Query: 315 AELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEF 374
+ Q R++ +E F G +L+ATD L S
Sbjct: 555 GSMSQEQRINSVEAFRDGKASFLLATD----------------------------LAS-- 584
Query: 375 GVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 434
RG+D K V TVIN+E PQ+ Y+HR+GRT RA G + +L + + KI +K+
Sbjct: 585 ---RGLDIKGVDTVINYEAPQSHEIYLHRVGRTARAGRQGRACTLAAEPDRKI---VKAA 638
Query: 435 VGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRN---EILNS 491
V + + I++ ++ + + + +D+ + +I + E + L E+
Sbjct: 639 VKTGRTQGAKIVS--RVIEASEADEWAAKVDDMKDEIDEILIEEKEDKQLAQVEMEVRKG 696
Query: 492 EKLKAHFE 499
E + AH E
Sbjct: 697 ENIMAHGE 704
>gi|89072882|ref|ZP_01159439.1| putative ATP-dependent RNA helicase RhlE [Photobacterium sp. SKA34]
gi|89051404|gb|EAR56859.1| putative ATP-dependent RNA helicase RhlE [Photobacterium sp. SKA34]
Length = 496
Score = 195 bits (495), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 144/416 (34%), Positives = 210/416 (50%), Gaps = 62/416 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF LGL ++ A+ K+G +KP+ IQ+ +IP IL GKDV+A A+TG+GKT + LPLL
Sbjct: 2 SFASLGLSAPILEAVAKQGYEKPSPIQEQAIPAILAGKDVMAAAQTGTGKTAGFTLPLLE 61
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCK--GQVQLKVVQLTSSMPAS 144
RL N +S ALVL PTREL QV V + + V V++ M
Sbjct: 62 RLANGRPARSNHV-RALVLTPTRELAAQVGESVATYSKNLRLSSAVVFGGVKVNPQM--- 117
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
LR + D+++ATPG + S ++ F D ++ILVLDEAD +L G+ D++
Sbjct: 118 -LR--MRKGADVLVATPGRLMDLHSQNAVK---FRD-VEILVLDEADRMLDMGFIRDIRK 170
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQ 259
+ A++P+ Q LL SAT S ++ +L K ++ NP V+ +V P+N V+Q
Sbjct: 171 ILALLPKERQNLLFSATFSDEIRELAKGLVSNP----------VEIDVNPRNQTARTVKQ 220
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
WI ++ K +LT L + K+ L+FT T A +L LE GI +A ++ Q
Sbjct: 221 -WICPVDQKKKPNLLTKLLNKRNWKQVLVFTKTKHGANKLATHLESRGISAAAIHGNKSQ 279
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
+R L F +G L+ATD RG
Sbjct: 280 GARTKALANFKSGDIRVLVATDI---------------------------------AARG 306
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+D + + V+NF++P A YVHRIGRTGRA G ++SLVS +E K I+
Sbjct: 307 LDIEQLPQVVNFDLPHVAEDYVHRIGRTGRAGCVGEAISLVSAEEAKDLAAIERLT 362
>gi|302823844|ref|XP_002993570.1| hypothetical protein SELMODRAFT_270055 [Selaginella moellendorffii]
gi|300138582|gb|EFJ05345.1| hypothetical protein SELMODRAFT_270055 [Selaginella moellendorffii]
Length = 434
Score = 195 bits (495), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 136/418 (32%), Positives = 210/418 (50%), Gaps = 53/418 (12%)
Query: 20 AEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFA 79
A A SF ELG+ LV A K G + PT IQ ++PL L+G+D++ A+TGSGKT A
Sbjct: 2 AAAAAVPSFGELGVREELVDACTKLGWKAPTPIQVEALPLALQGRDLIGLAQTGSGKTAA 61
Query: 80 YLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTS 139
+ LP+L LF + P A VL PTREL Q+ + AL Q+ ++ V +
Sbjct: 62 FALPILQALFQQCHPFF-----ACVLSPTRELAIQISEQFEAL----GSQIGVRSVAIVG 112
Query: 140 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGY 198
+ D AL P IV+ATPG + L+ +K FS ++K LVLDEAD +L +
Sbjct: 113 GVSMVDQAVALGKNPHIVVATPGRLLDHLT----NTKGFSLRNVKYLVLDEADKILHNDF 168
Query: 199 EDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ 258
E ++ + V+PR + L SAT ++ V KL++ L NP T EV + ++
Sbjct: 169 EKEVDEILKVVPRERKTFLFSATMTNKVAKLQRACLRNP---TKVEVSSKYTTAL--TLK 223
Query: 259 QFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELP 318
Q ++ + K Y + LL E+ A++FT T D RL L L G + ++ ++
Sbjct: 224 QEYVFVPAKHKDCYFVFLLN-EMAGSTAMVFTRTCDSTRRLALILRSLGFGAIPISGQMS 282
Query: 319 QNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVR 378
Q+ R L +F AG + LI TD R
Sbjct: 283 QSKRSGALLKFKAGDRNLLICTDVAS---------------------------------R 309
Query: 379 GIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
G+D +V VIN+++P N+ Y+HR+GRT RA +G ++S+V+ ++ +++ I+ +G
Sbjct: 310 GLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGRAISIVTQYDVDLYKRIEDLIG 367
>gi|152992886|ref|YP_001358607.1| ATP-dependent RNA helicase [Sulfurovum sp. NBC37-1]
gi|151424747|dbj|BAF72250.1| ATP-dependent RNA helicase [Sulfurovum sp. NBC37-1]
Length = 457
Score = 195 bits (495), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 144/410 (35%), Positives = 206/410 (50%), Gaps = 49/410 (11%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF LGL+ L+ A+ +G PT IQ+ +IP+++EGKDV+A A+TG+GKT + LPLL
Sbjct: 2 SFTNLGLNESLLKAIKDQGYTSPTPIQKQAIPVVIEGKDVLAAAQTGTGKTAGFTLPLLE 61
Query: 87 RLFNESSPK-SKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASD 145
RL +E+ PK K LVL PTREL QV + + K + + + +
Sbjct: 62 RL-SETHPKMGKKQIRVLVLTPTRELAAQVAESIKTYGKYMKYTSTVVYGGVGINPQLAT 120
Query: 146 LRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL 205
+R + DIVIATPG + L Q FS +L+ LVLDEAD +L G+ D+K L
Sbjct: 121 IRRGV----DIVIATPG---RLLDIAGQQGIDFS-ALETLVLDEADRMLDMGFIHDIKKL 172
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
++P+ Q LL SAT S ++ KL +L NP ++ + D++ V F + S
Sbjct: 173 MKMMPKERQTLLFSATFSLEIKKLASGLLKNPVLVEVARENTTADQI--SQVVHF-VDKS 229
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
+ +LL L K ++ L+FT T A RL LE+ GI +A ++ Q +R
Sbjct: 230 RKRELLSQLIKTK---DWRQVLVFTRTKHGANRLTKQLEEAGISAAAIHGNKSQGARTKA 286
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
L F A L+ATD RGID +
Sbjct: 287 LASFKANEIRVLVATDI---------------------------------AARGIDIDQL 313
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
V+N+E+P YVHRIGRTGRA +G +VSLV DE K+ +I+ F+
Sbjct: 314 PHVVNYELPNVPEDYVHRIGRTGRAGQSGEAVSLVCVDEHKLLFDIEKFI 363
>gi|451823243|ref|YP_007459517.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
desouzaii TCC079E]
gi|451776043|gb|AGF47084.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
desouzaii TCC079E]
Length = 458
Score = 195 bits (495), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 141/415 (33%), Positives = 208/415 (50%), Gaps = 54/415 (13%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF + GL+ L+ + G KPT IQ+ SIPLILEG+DV+ A+TG+GKT A+++P+++
Sbjct: 21 SFSDFGLNKILLDTIISIGHTKPTPIQEKSIPLILEGRDVIGAAQTGTGKTAAFVVPIIN 80
Query: 87 RLFNESSPKSKLAPA-----ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSM 141
RL ++P S +PA +L+LVPTREL QVY I++ L+ + L
Sbjct: 81 RLLPFANPSS--SPARHLLRSLILVPTRELASQVYES----IKIYSKNTNLRSLVLFGGT 134
Query: 142 PASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDD 201
+ L +I++ATPG + + G L +++ S ILVLDEAD +L G+ D
Sbjct: 135 DHNSQEDKLRLGSEILVATPGRLIAHMEQGSLHTQNIS----ILVLDEADRMLDMGFMPD 190
Query: 202 LKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW 261
+ + +P+ Q LL SAT S+ + K+ L+NP E+ I V+Q
Sbjct: 191 VDKIVNALPKYKQILLFSATFSNSIRKIGLSYLNNPV-----EIDVTVPNSIADTVEQIS 245
Query: 262 ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 321
++KLL IL +L+ + ++ +IFTNT +L FL IK ++ + Q
Sbjct: 246 YMVPNQNKLLAILFILQSKPLE-SVIIFTNTKLATIKLSSFLFSKNIKCDSIHGDKNQID 304
Query: 322 RLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGID 381
R LE F G + L+ATD RG+D
Sbjct: 305 RTIALENFRNGSLNVLVATD---------------------------------VAARGLD 331
Query: 382 FKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
V VINF++P N YVHRIGRTGRA N G+++SL S +E I+ F G
Sbjct: 332 VVGVSYVINFDVPFNPEDYVHRIGRTGRANNKGSAISLCSYEEETCLLNIEKFTG 386
>gi|320159208|ref|YP_004191586.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
gi|319934520|gb|ADV89383.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
Length = 398
Score = 195 bits (495), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 142/412 (34%), Positives = 213/412 (51%), Gaps = 52/412 (12%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF +LGL L A++ G KPT IQ +IP+ILEG+D++A A+TG+GKT +++LP+L
Sbjct: 2 SFTQLGLCASLTDAIDTLGYPKPTRIQTQAIPVILEGRDLIAAAQTGTGKTASFVLPMLE 61
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQ-VQLKVVQLTSSMPASD 145
+L + + K K AL+LVPTREL QV ++ GQ + L+ + + +
Sbjct: 62 KLRHGQTQKKK-RTRALILVPTRELAIQVDEKIKQY-----GQNLALRSLAMFGGVDEKA 115
Query: 146 LRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL 205
+ AL DI++ATPG + Q + + +++LVLDEAD +L G+ DD+ +
Sbjct: 116 QKQALIEGLDILVATPGRLLDMYG----QRAVYFEEIEMLVLDEADRMLDMGFIDDINKI 171
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
+P Q LL SAT S+ V L K +HNP+ E+ ++ N++Q WI
Sbjct: 172 LDRLPENIQHLLFSATLSNKVRDLAKSAIHNPF-----EISIAANQASKSNIEQ-WIITV 225
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
++D+ +L+ L E + LIF T A +L LEK GI + ++ Q R +
Sbjct: 226 DKDQKSALLSHLIKENQWDQTLIFIETKHGAAKLVSQLEKRGIVAEAFHSGRSQAVREQL 285
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGV-VRGIDFKN 384
LE+F AG YL++T GV RGID +
Sbjct: 286 LEDFKAGKIKYLVST----------------------------------GVAARGIDIEA 311
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
+ V+N+++P A YVHRIGRTGRA G ++SLVS D K I+S +G
Sbjct: 312 LPRVVNYDLPFPADEYVHRIGRTGRANAKGEAISLVSKDNFKNLCMIESRLG 363
>gi|254481835|ref|ZP_05095078.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
HTCC2148]
gi|214037964|gb|EEB78628.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
HTCC2148]
Length = 435
Score = 194 bits (494), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 138/411 (33%), Positives = 209/411 (50%), Gaps = 52/411 (12%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
+F++LGL L+ A+ KKG +P+ IQ +IP +L GKDV+A A+TG+GKT A+ LP+L
Sbjct: 2 TFDQLGLSSALLRAIEKKGYSEPSPIQAKAIPAVLSGKDVMAAAQTGTGKTAAFTLPILQ 61
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEV--MALIELCKGQVQLKVVQLTSSMPAS 144
RL N S+P AL+L PTREL QV V L K V V++ S + +
Sbjct: 62 RL-NASAPIKPHRIRALILTPTRELAAQVAQSVSTYGLHTPLKSAVVFGGVKINSQI--A 118
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
LR + DI+IATPG + G + F + L+ILVLDEAD +L G+ D++
Sbjct: 119 QLRRGV----DILIATPGRLLDLHGQGEV---DFGE-LEILVLDEADRMLDMGFIHDIRR 170
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264
+ ++P Q LL SAT ++++ +L K L +P + + D+V + W+
Sbjct: 171 ILKLLPAERQNLLFSATFAAEIRELTKKFLQDPIEVEVASRNATADKV------EQWVYP 224
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
++ + +L L E + L+F+ T A RL L+K GI++ ++ Q +R
Sbjct: 225 VDKKRKGALLRELVEEKCWTQVLVFSRTKHGANRLAQQLDKAGIEATAIHGNKSQGARTR 284
Query: 325 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 384
LE+F +G L+ATD RG+D
Sbjct: 285 ALEDFKSGRLRVLVATDIA---------------------------------ARGLDIAQ 311
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ V+NF++P A YVHRIGRTGRA +G + SLV DE+K +I+ +
Sbjct: 312 LPQVVNFDLPNVAQDYVHRIGRTGRAGASGKAYSLVCADEIKQLNDIEQLI 362
>gi|254251800|ref|ZP_04945118.1| DEAD/DEAH box helicase-like [Burkholderia dolosa AUO158]
gi|124894409|gb|EAY68289.1| DEAD/DEAH box helicase-like [Burkholderia dolosa AUO158]
Length = 511
Score = 194 bits (494), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 135/416 (32%), Positives = 212/416 (50%), Gaps = 54/416 (12%)
Query: 25 EKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPL 84
+ +F++ GL ++ A+ ++G PT IQ +IP++L G+DV+ A+TG+GKT ++ LP+
Sbjct: 32 DANFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPI 91
Query: 85 LHRLF---NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELC--KGQVQLKVVQLTS 139
+ RL N S+ ++ AL+L PTREL QV + V A + + V V +
Sbjct: 92 IQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNP 151
Query: 140 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE 199
M ++LR + +I+IATPG L V Q + ++ILVLDEAD +L G+
Sbjct: 152 QM--AELRRGV----EILIATPG----RLLDHVQQKTANLGQVQILVLDEADRMLDMGFL 201
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
DL+ + ++P+ Q LL SAT S ++ KL L NP + + + NV Q
Sbjct: 202 PDLQRILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEV-----ARSNSTNANVTQ 256
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+E DK ++ LL+ E K+ ++F N+ A RL LE+ G+ ++ ++ + Q
Sbjct: 257 IVYDVAEGDKQAAVVQLLR-ERGLKQVIVFCNSKIGASRLARQLERDGVVASAIHGDKSQ 315
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
R+ L+ F G + L+ATD RG
Sbjct: 316 LERMQALDAFKRGEVEALVATDV---------------------------------AARG 342
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+D + VINF++P NA YVHRIGRTGRA TG ++SL SP+E K +I+ +
Sbjct: 343 LDIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQLADIEKLI 398
>gi|119774410|ref|YP_927150.1| DEAD/DEAH box helicase [Shewanella amazonensis SB2B]
gi|119766910|gb|ABL99480.1| DEAD/DEAH box helicase-like protein [Shewanella amazonensis SB2B]
Length = 456
Score = 194 bits (494), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 138/411 (33%), Positives = 207/411 (50%), Gaps = 57/411 (13%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F + LD RL+ +L GI+ PT IQ +IP+ L GKD++A +KTGSGKT A+LLP + R
Sbjct: 3 FSDFSLDKRLMQSLKHMGIETPTPIQSQAIPVALAGKDLMASSKTGSGKTLAFLLPAMQR 62
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+ + S SK P L+L+PTREL QQVY+++ L+ Q + + + +D
Sbjct: 63 VIS-SKALSKKDPRVLILLPTRELAQQVYAQLRLLV----ANTQYRAISVLGGENFNDQA 117
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
ALA P ++ATPG + L Q F + L++LVLDEAD +L G+ LKA++A
Sbjct: 118 KALAREPHFIVATPGRIADHLQ----QRHLFLNGLELLVLDEADRMLDLGFAPQLKAINA 173
Query: 208 VIP-RGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEV----GDVKDEVIPKNVQQFW 261
R Q L+ SAT +V +L +L P + + V GD++ +++ + +
Sbjct: 174 AADHRRRQTLMFSATLEHGEVHELAAELLKEPEHVAIDAVHLGHGDIEQQILLADHLEHK 233
Query: 262 ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 321
+ ER +L+ ++ +IFT T RL L + G +A L+ EL Q
Sbjct: 234 EALLER-----LLSGNNF----RQVMIFTATRQDTERLATLLAEKGYNTAALSGELRQAQ 284
Query: 322 RLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGID 381
R I++ F+ L+ TD RG+D
Sbjct: 285 RNQIMDSFSREHHRILVTTDVAS---------------------------------RGLD 311
Query: 382 FKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432
NV V+NF+MP+ A YVHRIGRTGRA N G ++SLV P + F +++
Sbjct: 312 ISNVSLVVNFDMPKFAEEYVHRIGRTGRAGNKGTAISLVGPKDWDNFLKVQ 362
>gi|340372235|ref|XP_003384650.1| PREDICTED: probable ATP-dependent RNA helicase DDX27-like
[Amphimedon queenslandica]
Length = 598
Score = 194 bits (494), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 162/504 (32%), Positives = 240/504 (47%), Gaps = 73/504 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
+F ++ L L+ A+ G PT +Q +IPL L GKD+ A A TG+GKT A++LP+L
Sbjct: 146 AFTDMNLSRPLLKAVTLLGFTSPTSVQARTIPLALMGKDICACAATGTGKTAAFMLPILE 205
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
RL P + L+L+PTREL QV+S AL + K + L L + L
Sbjct: 206 RLLYR--PTRMRSTRVLILLPTRELAIQVHSVGKALAQNTKIDLCLAAGGLEGRSQEASL 263
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKAL 205
R + PDIVIATPG + L + SFS +++ILVLDEAD +L + D + +
Sbjct: 264 RKS----PDIVIATPGRLVDHLH----NTPSFSLQAIEILVLDEADRMLDEHFLDQMNEI 315
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWI--- 262
+ P Q LL SAT + +V++L +L LHNP + + D D N+ Q ++
Sbjct: 316 IRLCPVSRQTLLFSATMTDEVEELARLSLHNPVRVFVDSNTDTAD-----NLHQEFVRIR 370
Query: 263 SCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 322
S E D+ I++ L L + L+F T A R +L L GIK++ L+ L Q R
Sbjct: 371 SNKEADR-EAIVSALCLRSFKDHCLVFVPTKKQAHRQRLILGLLGIKTSELHGSLTQLQR 429
Query: 323 LHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDF 382
L L+ F D LIATD RG+D
Sbjct: 430 LEALKGFKEAEVDILIATD---------------------------------LAARGLDI 456
Query: 383 KNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENED 442
+NV TVIN+ MP Y+HR+GRT RA +G SV+LV K+ +EI V +
Sbjct: 457 ENVRTVINYSMPPTVKQYIHRVGRTARAGKSGKSVTLVGEKGRKVLKEI---VKGAKCPP 513
Query: 443 SNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLK-AHFEVN 501
N + P AE + K +KI+ ES +D+ + ++++ A EV
Sbjct: 514 KNRVIP---------------AEVIEKYKSKISSLESEIRDILKQEEEEKQVRVAQMEVT 558
Query: 502 PKDLDLLKHDKDLSKKPPASHLRD 525
+ ++ HD ++ +PP +D
Sbjct: 559 KANNMIVHHD-EIHSRPPRVWFQD 581
>gi|302792278|ref|XP_002977905.1| hypothetical protein SELMODRAFT_107914 [Selaginella moellendorffii]
gi|300154608|gb|EFJ21243.1| hypothetical protein SELMODRAFT_107914 [Selaginella moellendorffii]
Length = 741
Score = 194 bits (494), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 164/516 (31%), Positives = 240/516 (46%), Gaps = 71/516 (13%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF EL + L+ A + G ++PT IQ A IPL L G+D+ A TGSGKT A+ LP+L
Sbjct: 116 SFIELNVSRPLLRACDALGYRQPTPIQAACIPLALAGRDICGSAVTGSGKTAAFALPILE 175
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
RL P+ A L++ PTREL Q++S + L + + L V L+S + L
Sbjct: 176 RLL--FRPRRIPAIRVLIITPTRELAVQLHSMIEKLAQFTDIRCCLVVGGLSSKVQEVAL 233
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
R PDIV+ATPG M L QS + L ILVLDEAD LL G+ +++ L
Sbjct: 234 RTH----PDIVVATPGRMIDHLRN--TQSVGL-EELAILVLDEADRLLELGFREEIHELV 286
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL-PEV---GDVKDEVIPKNVQQFWI 262
+ P Q +L SAT + +V +L KL L +P L+ P + +EVI
Sbjct: 287 KLCPSRRQTMLFSATMTDEVSELIKLSLKSPVRLSADPSTERPSTLTEEVIRIR------ 340
Query: 263 SCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 322
+ E DK +L+L L + K +IF+ T A RLK+ G+KSA L+ L Q R
Sbjct: 341 AGHEEDKEAIVLSLCSRSL-KSKTIIFSGTKVEAHRLKILFGLSGLKSAELHGNLTQAQR 399
Query: 323 LHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDF 382
L LE F D+LIATD RG+D
Sbjct: 400 LEALEAFRKQEVDFLIATD---------------------------------VAARGLDI 426
Query: 383 KNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENED 442
V +VIN E P+ YVHR+GRT RA G SV+L++ + + + + G +
Sbjct: 427 IGVESVINLECPKEIKTYVHRVGRTARAGRHGRSVTLMTEQDRLLLKAVAKRAGSKLQKR 486
Query: 443 SNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNP 502
++A ++ S R R E + + + +I +E + LR KA E N
Sbjct: 487 --------VVAATSIASWRERIEKMEEDLVQILQQEREEKFLR---------KAEMEAN- 528
Query: 503 KDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEA 538
K +++ ++ ++ +P + + D AK A
Sbjct: 529 KAQNMMDYEAEIFARPKKTWFQSQQDKTRIAKVSPA 564
>gi|452977644|gb|EME77410.1| hypothetical protein MYCFIDRAFT_83332 [Pseudocercospora fijiensis
CIRAD86]
Length = 498
Score = 194 bits (494), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 137/453 (30%), Positives = 223/453 (49%), Gaps = 61/453 (13%)
Query: 6 EIPSKEVKQAEE---EEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILE 62
E+P ++V+ A ++ + EK+F +LG+ L A + ++PT IQ+ +IP+ LE
Sbjct: 51 EVPERDVESAAASTVKDGDEAAEKTFADLGVREELCDACDSLNFKRPTAIQREAIPIALE 110
Query: 63 GKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMAL 122
GKD++ A+TGSGKT A+ LP+L L ++ P L+L PTREL Q+ + AL
Sbjct: 111 GKDIIGLAETGSGKTAAFALPILQALLDKPQPLF-----GLILAPTRELAYQISQQFEAL 165
Query: 123 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DS 181
L + ++ + M ALA P IV+ATPG + + +K FS
Sbjct: 166 GSL----ISVRCAVIVGGMDMVPQAVALAKKPHIVVATPGRLLDHME----NTKGFSVKH 217
Query: 182 LKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILT 241
K LV+DEAD LL + L + + R + +L SAT S+ ++ L + L NP ++
Sbjct: 218 FKYLVMDEADRLLDLDFGPILDKILQELNRDRRTMLFSATMSTKLNSLTRAALQNPVRVS 277
Query: 242 LPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKL 301
+ E KN+ Q ++ + K +Y++ LL E K +IFT TI R+
Sbjct: 278 ISE----SSYQTVKNLMQRYMFIPHKYKDIYLVYLLD-EFAGKTCIIFTRTIHETQRIAY 332
Query: 302 FLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRK 361
L G + L+ ++ Q++RL L +F G D L+ATD
Sbjct: 333 VLRALGRSAIPLHGQMNQSARLGALNKFRGGSRDILVATD-------------------- 372
Query: 362 SKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS 421
RG+D +V V+NF++P ++ YVHR+GRT RA +G ++S+V+
Sbjct: 373 -------------VAARGLDIPSVDLVLNFDLPPDSKTYVHRVGRTARAGKSGVAISIVT 419
Query: 422 PDEMKIFEEIKSFVGD------DENEDSNIIAP 448
+++I++ I+ +G E E+ + AP
Sbjct: 420 QYDIEIYQRIEKALGKKLEEHATEREEVMVFAP 452
>gi|335041830|ref|ZP_08534857.1| superfamily II DNA and RNA helicase [Methylophaga
aminisulfidivorans MP]
gi|333788444|gb|EGL54326.1| superfamily II DNA and RNA helicase [Methylophaga
aminisulfidivorans MP]
Length = 433
Score = 194 bits (494), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 135/417 (32%), Positives = 209/417 (50%), Gaps = 60/417 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
+F ELGL L L A+ + G P+ IQ +IP I++G DV+A A+TG+GKT + LPLLH
Sbjct: 2 TFSELGLILPLQRAVTESGYTTPSPIQAKAIPAIMQGNDVMAAAQTGTGKTAGFTLPLLH 61
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQV------YSEVMALIELCKGQVQLKVVQLTSS 140
+L +E P ALVL PTREL QV Y + + L + V V++
Sbjct: 62 KL-SEGKPARANQARALVLTPTRELAAQVEESIKTYGKYLPL----RSAVVFGGVKINPQ 116
Query: 141 MPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYED 200
M +R + D+++ATPG + ++ D L++LVLDEAD +L G+
Sbjct: 117 M--MQMRRGV----DVLVATPGRLLDLYQQNAIR----FDELEVLVLDEADRMLDMGFIH 166
Query: 201 DLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF 260
D++ + ++P+ Q LL SAT S+++ +L K ++ NP E+ K V+Q
Sbjct: 167 DIRKIINMLPQKRQTLLFSATFSNEIRELAKRLVKNPV-----EISVAPANTTAKKVKQ- 220
Query: 261 WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 320
WI ++ + +L L + + L+F+ T A +L +LE G+K+A ++ Q
Sbjct: 221 WIIPVDKKQKPALLNQLIQDNNWYQVLVFSKTKHGANKLTKYLEDHGLKAAAIHGNKSQG 280
Query: 321 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 380
+R L +F + L+ATD RG+
Sbjct: 281 ARTRALADFKSNTIQVLVATDI---------------------------------AARGL 307
Query: 381 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
D + VIN ++P AA YVHRIGRTGRA TG ++SLVS DE+ ++I+ +G+
Sbjct: 308 DIDQLPHVINVDLPNVAADYVHRIGRTGRAGATGEAISLVSADEIDQLKDIEKLIGN 364
>gi|424032469|ref|ZP_17771886.1| type III restriction enzyme, res subunit [Vibrio cholerae HENC-01]
gi|408875527|gb|EKM14671.1| type III restriction enzyme, res subunit [Vibrio cholerae HENC-01]
Length = 443
Score = 194 bits (494), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 136/413 (32%), Positives = 208/413 (50%), Gaps = 49/413 (11%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F++LGLD RL+ L +K T IQQ +IP+ + GKD++A +KTGSGKT A++LP+LH+
Sbjct: 3 FKDLGLDNRLLKNLKHYDFKKATDIQQQAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHK 62
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
S +K P A++L PTREL +QVY E+ +++ G + + +D
Sbjct: 63 SLKNKSFSAK-DPRAVILAPTRELAKQVYGELRSML----GGLSYDAALILGGENFNDQV 117
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS- 206
AL P ++ATPG + L L F D L+ LVLDEAD +L G+ +L+ +
Sbjct: 118 KALRRYPKFIVATPGRLADHLEHRSL----FLDGLETLVLDEADRMLDLGFAPELRRIHK 173
Query: 207 AVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
A R Q L+ SAT ++V+ + +L+ P + + V +E Q+F++ C
Sbjct: 174 AAKHRRRQTLMFSATLDHAEVNDIAAEMLNAPKRIAI----GVSNEEHKDITQKFYL-CD 228
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
D IL + E ++ +IFT T D RL L + +K+ L+ L Q R I
Sbjct: 229 HLDHKEAILERVLEEAEYRQVIIFTATRDDTERLTAKLNEKKLKAIALSGNLNQTQRNTI 288
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
+ +F +F L+ TD RG+D V
Sbjct: 289 MSQFERAVFKILVTTDVAS---------------------------------RGLDIATV 315
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD 438
VINF+MP++ YVHR+GRTGRA N G +VSLV P + F+ +++++ D
Sbjct: 316 THVINFDMPKHTEEYVHRVGRTGRAGNKGDAVSLVGPKDWDSFKRVETYLQQD 368
>gi|90414421|ref|ZP_01222398.1| putative ATP-dependent RNA helicase RhlE [Photobacterium profundum
3TCK]
gi|90324534|gb|EAS41090.1| putative ATP-dependent RNA helicase RhlE [Photobacterium profundum
3TCK]
Length = 464
Score = 194 bits (494), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 142/415 (34%), Positives = 204/415 (49%), Gaps = 60/415 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF LGL ++ A+ K+G + P+ IQ +IP ++EGKDV+A A+TG+GKT + LP+L
Sbjct: 2 SFASLGLSAPILEAVAKQGYETPSPIQAQAIPAVIEGKDVMAAAQTGTGKTAGFTLPVLE 61
Query: 87 RLFNESSPKSKLAPA-ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASD 145
RL N P+ K ALVL PTREL QV V L + L + + +
Sbjct: 62 RLSN--GPRVKPNQVRALVLTPTRELAAQVAESVA----LYAKNLPLSSAVVFGGVKINP 115
Query: 146 LRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL 205
L D+++ATPG + + Q D L++LVLDEAD +L G+ D++ L
Sbjct: 116 QMMRLRQGADVLVATPGRLLDLYN----QRAVRFDQLEVLVLDEADRMLDMGFIRDIRKL 171
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQF 260
AV+P+ Q LL SAT S ++ +L K +++NP V+ V P+N V+Q
Sbjct: 172 LAVMPKQRQNLLFSATFSDEIRQLAKGLVNNP----------VEISVTPRNATAPTVKQ- 220
Query: 261 WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 320
WI ++ + +LT L E + L+FT T A RL LE GIK+A ++ Q
Sbjct: 221 WICPVDKSRKANLLTKLLKENNWGQVLVFTKTKHGANRLTTHLEGRGIKAAAIHGNKSQG 280
Query: 321 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 380
+R L F + L+ATD RG+
Sbjct: 281 ARTKALANFKSNEIQVLVATDIA---------------------------------ARGL 307
Query: 381 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
D + + V+NFE+P A YVHRIGRTGRA G ++SLV DE K I+ +
Sbjct: 308 DIEQLPQVVNFELPHVAEDYVHRIGRTGRAGCEGQAISLVCADEYKDLAAIERLI 362
>gi|392308571|ref|ZP_10271105.1| DEAD/DEAH box helicase [Pseudoalteromonas citrea NCIMB 1889]
Length = 454
Score = 194 bits (494), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 143/419 (34%), Positives = 205/419 (48%), Gaps = 63/419 (15%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F ELG+D RL L +GI PT IQ ++P + G DV A++KTGSGKT A+LLP +HR
Sbjct: 16 FTELGIDTRLEAQLAHQGITSPTEIQSQAVPTAIAGHDVFAQSKTGSGKTLAFLLPAIHR 75
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+ + + SK P L++ PTREL QV+S+ L+ + VV++ +D
Sbjct: 76 VMKQRA-LSKRDPRVLIIAPTRELATQVFSQCRLLV----AGTSISVVKVLGGENFNDQV 130
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS- 206
AL P IVI +PG + L LQ L++LV DEAD +L G+ L ++
Sbjct: 131 KALRKDPQIVIGSPGRIADHLEQRSLQ----LSGLELLVFDEADRMLDLGFAPQLNLINE 186
Query: 207 AVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEV----GDVKDEVIPKNVQQFW 261
R Q LL SAT + V+ + +L +P + L + GD+K Q +
Sbjct: 187 QANHRLRQTLLFSATLDHAQVEVTSRNLLRSPKKIILSDAHQQHGDIK--------QTLY 238
Query: 262 ISCSERDKLLYILTLLKLELVQK---KALIFTNTIDMAFRLKLFLEKFGIKSAILNAELP 318
+ D L + LLK + Q + +IFT T + R+ L GIK+ L +L
Sbjct: 239 FA----DHLDHKDALLKHFVTQDNVGQCIIFTATRNDTVRISEQLNTLGIKAVALAGDLA 294
Query: 319 QNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVR 378
QN RL I++ F+ GLF L+ TD R
Sbjct: 295 QNKRLDIMDTFSRGLFKVLVTTDVAS---------------------------------R 321
Query: 379 GIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
G+D +V VINF++P+ A YVHRIGRTGRA G ++SLV P + F IK+++ D
Sbjct: 322 GLDLLSVTHVINFDLPKQAEEYVHRIGRTGRAGFKGTAISLVGPKDWNSFVAIKNYLND 380
>gi|21593647|gb|AAM65614.1| replication protein A1-like [Arabidopsis thaliana]
Length = 456
Score = 194 bits (494), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 140/427 (32%), Positives = 209/427 (48%), Gaps = 57/427 (13%)
Query: 19 EAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTF 78
E E E K+F ELG+ LV A + G + P+ IQ ++P LEGKDV+ A+TGSGKT
Sbjct: 2 EEENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTG 61
Query: 79 AYLLPLLHRLFN---ESSPKSKLAP----AALVLVPTRELCQQVYSEVMALIELCKGQVQ 131
A+ +P+L L +S PK P A VL PTREL Q+ + AL +
Sbjct: 62 AFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEAL----GADIS 117
Query: 132 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEA 190
L+ L + AL P +++ATPG + +S +K FS SLK LVLDEA
Sbjct: 118 LRCAVLFGGIDRMQQTIALGKRPHVIVATPGRLWDHMS----DTKGFSLKSLKYLVLDEA 173
Query: 191 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD 250
D LL+ +E L + IPR + L SAT + V KL++ L NP + E
Sbjct: 174 DRLLNEDFEKSLNQILEEIPRERKTFLFSATMTKKVRKLQRACLRNPVKI---EAASKYS 230
Query: 251 EVIPKNVQQFWISCSERD-KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIK 309
V Q +++ +D L+YIL+ E+ + ++IFT T D L L L G +
Sbjct: 231 TVDTLKQQYRFVAAKYKDCYLVYILS----EMPESTSMIFTRTCDGTRFLALVLRSLGFR 286
Query: 310 SAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAK 369
+ ++ ++ Q+ RL L +F AG + L+ TD
Sbjct: 287 AIPISGQMTQSKRLGALNKFKAGECNILVCTDVAS------------------------- 321
Query: 370 LDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFE 429
RG+D +V VIN+++P N+ Y+HR+GRT RA +G +SLV+ E++ +
Sbjct: 322 --------RGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQYELEWYI 373
Query: 430 EIKSFVG 436
+I+ +G
Sbjct: 374 QIEKLIG 380
>gi|443316249|ref|ZP_21045701.1| DNA/RNA helicase, superfamily II [Leptolyngbya sp. PCC 6406]
gi|442784157|gb|ELR94045.1| DNA/RNA helicase, superfamily II [Leptolyngbya sp. PCC 6406]
Length = 438
Score = 194 bits (494), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 133/425 (31%), Positives = 209/425 (49%), Gaps = 65/425 (15%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SFE LGL ++ A+ +G PT IQ +IPL+LEGKD++A A+TG+GKT + LP+LH
Sbjct: 2 SFETLGLAAGILRAVEDQGYSTPTPIQAKAIPLVLEGKDLMASAQTGTGKTAGFTLPILH 61
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQV---------YSEVMALIELCKGQVQLKVVQL 137
+L + + + P ALVL PTREL QV Y + + ++Q ++ +L
Sbjct: 62 KLASAGRGQGRRPPRALVLTPTRELAAQVAESIATYGKYVPLRTAVVFGGVKIQPQIHKL 121
Query: 138 TSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYG 197
+ D+++ATPG L V Q +++LVLDEAD +L G
Sbjct: 122 QRGV-------------DVLVATPG----RLLDHVGQRTVDLSQVEVLVLDEADRMLDMG 164
Query: 198 YEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNV 257
+ D++ L +P Q L+ SAT S+++ KL IL +P ++ + D++
Sbjct: 165 FIHDIRRLLNELPAERQTLMFSATFSNEIKKLADDILRDPVLVEVAARNSTADKI----- 219
Query: 258 QQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAEL 317
+ +R + +L+ + + ++ L+FT T A RL LE+ G+K+A ++
Sbjct: 220 -SQVVHPVDRQRKRELLSYMIGQHNWQQVLVFTRTKHGANRLAEQLERDGLKTAAIHGNK 278
Query: 318 PQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVV 377
Q +R L++F G L+ATD
Sbjct: 279 SQGARTRALQDFKKGAVRVLVATDIA---------------------------------A 305
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RG+D ++ V+NFE+P + YVHRIGRTGRA NTG +VSLVS +E + I+ +
Sbjct: 306 RGLDIDHLPHVVNFELPNVSEDYVHRIGRTGRAGNTGQAVSLVSSEEYPLLRSIERLLKQ 365
Query: 438 DENED 442
D +D
Sbjct: 366 DLPKD 370
>gi|403282331|ref|XP_003932605.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Saimiri
boliviensis boliviensis]
Length = 765
Score = 194 bits (494), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 142/417 (34%), Positives = 200/417 (47%), Gaps = 49/417 (11%)
Query: 17 EEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGK 76
E+ ++ +E SF+++ L L+ A+ G ++PT IQ+A IP+ L GKD+ A A TG+GK
Sbjct: 178 EDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGK 237
Query: 77 TFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQ 136
T A+ LP+L RL + P+ LVLVPTREL QV+S L + C L V
Sbjct: 238 TAAFALPVLERLIYK--PRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGG 295
Query: 137 LTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLS 195
L + LRAA PDI+IATPG + L SF S+++L+LDEAD +L
Sbjct: 296 LDLKSQEAALRAA----PDILIATPGRLIDHLHN----CPSFHLSSIEVLILDEADRMLD 347
Query: 196 YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK 255
+E+ +K + + Q +L SAT + +V L + L NP + + + +V P
Sbjct: 348 EYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFV----NSNTDVAPF 403
Query: 256 NVQQFW-ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILN 314
Q+F I + I+ L ++FT T A R+ + L G++ L+
Sbjct: 404 LRQEFIRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELH 463
Query: 315 AELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEF 374
L Q RL L F D L+ATD
Sbjct: 464 GNLSQTQRLEALRRFKDEQIDILVATD--------------------------------- 490
Query: 375 GVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 431
RG+D + V TVINF MP YVHR+GRT RA G SVSLV DE K+ +EI
Sbjct: 491 VAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEI 547
>gi|189208750|ref|XP_001940708.1| ATP-dependent RNA helicase DRS1 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187976801|gb|EDU43427.1| ATP-dependent RNA helicase DRS1 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 805
Score = 194 bits (494), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 128/410 (31%), Positives = 198/410 (48%), Gaps = 50/410 (12%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF+ + L ++ L G +PT IQ ++P+ ++GKDVV A+TGSGKT A+L+P+L
Sbjct: 276 SFQAMSLSRPILRGLASVGFTEPTPIQNKAVPIAMQGKDVVGGAETGSGKTAAFLIPILE 335
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
RL PK + +PTREL Q ++ L + + D
Sbjct: 336 RLL--YRPKKVPTTRVAIFMPTRELAVQCFNVATKLASFT----DITFALMAGGFSTRDQ 389
Query: 147 RAALAGPPDIVIATPG-CMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL 205
A L PD+VIATPG + +T Q + L+ILVLDEAD +L G+E L +
Sbjct: 390 EAVLKTRPDVVIATPGRFIDHMHNTAAFQ----VEHLEILVLDEADRMLEEGFESQLNEI 445
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-WISC 264
IP+ Q +L SAT +S VDKL ++ + P L + D K + Q+F +
Sbjct: 446 LTTIPKSRQTMLFSATMTSSVDKLIRIGMDKPVRLMV----DAKKHTVAGLTQEFVRLRQ 501
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
+ DK L L + ++ +K ++F A R+++ G+K++ L+ + Q R+
Sbjct: 502 GKEDKRLAYLMYICEKIYTEKVIVFFRQKKEAHRVRVVFALCGLKASELHGNMSQEQRIQ 561
Query: 325 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 384
+E F +G YL+ATD RG+D KN
Sbjct: 562 SVEAFRSGKSAYLLATDVAS---------------------------------RGLDIKN 588
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS-PDEMKIFEEIKS 433
V TVIN+E PQ+ Y+HR+GRT RA +G + +L + PD + + +K+
Sbjct: 589 VSTVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKVVKQAVKA 638
>gi|449297073|gb|EMC93092.1| hypothetical protein BAUCODRAFT_77654 [Baudoinia compniacensis UAMH
10762]
Length = 496
Score = 194 bits (494), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 133/412 (32%), Positives = 206/412 (50%), Gaps = 52/412 (12%)
Query: 26 KSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLL 85
KSF +LG++ L A G + PT IQ+ +IPL L G+D++ A+TGSGKT A+ LP+L
Sbjct: 58 KSFADLGVNESLCDACTSLGFKTPTAIQREAIPLALSGRDIIGLAETGSGKTAAFALPIL 117
Query: 86 HRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASD 145
L ++ P LVL PTREL Q+ + AL L ++++ + M
Sbjct: 118 QALLHDPQPFF-----GLVLAPTRELAYQISQQFEALGSL----IRVRCAVIVGGMDMVP 168
Query: 146 LRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKA 204
ALA P IV+ATPG + L +K FS SLK L++DEAD LL + L
Sbjct: 169 QAIALAKKPHIVVATPGRLLDHLE----NTKGFSLRSLKYLIMDEADRLLDLDFGPILDK 224
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264
+ V+PR + L SAT ++ +D L + L NP +++ N+ Q +I
Sbjct: 225 ILQVLPRERRTALFSATMNTKLDNLTRAALRNPVRVSI----STSSYQTVANLLQQYIFI 280
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
+ K +Y++ LL E + ++FT T+ RL L + L+ +LPQ++RL
Sbjct: 281 PHKHKDVYLIHLLT-EFSGQTCILFTRTVTETQRLAFLLRALNFSAIPLHGQLPQSARLG 339
Query: 325 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 384
L +F +G L+ATD RG+D +
Sbjct: 340 ALNKFRSGSRSILVATDVA---------------------------------ARGLDIPS 366
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
V VINF++P ++ YVHR+GRT RA +G +VS+V+ ++++F+ I+ +G
Sbjct: 367 VDLVINFDLPPDSKTYVHRVGRTARAGKSGVAVSVVTQYDVEVFQRIEKALG 418
>gi|453082962|gb|EMF11008.1| ATP-dependent rRNA helicase RRP3 [Mycosphaerella populorum SO2202]
Length = 516
Score = 194 bits (494), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 132/412 (32%), Positives = 207/412 (50%), Gaps = 52/412 (12%)
Query: 26 KSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLL 85
K+F ELG+ L A G + PT IQ+ SIP+ L+GKDV+ A+TGSGKT A+ LP+L
Sbjct: 88 KTFAELGVREELCDACISLGYKTPTAIQRESIPIALQGKDVIGLAETGSGKTAAFALPIL 147
Query: 86 HRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASD 145
L + LVL PTREL Q+ + AL L + +K + M +
Sbjct: 148 QALLEKQDHYF-----GLVLAPTRELAYQISQQFEALGSL----INVKCAVIVGGMDMTP 198
Query: 146 LRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKA 204
+ ALA P I++ATPG + L +K FS LK LV+DEAD LL + L
Sbjct: 199 QQIALAKKPHIIVATPGRLMDHLEN----TKGFSLRKLKYLVMDEADRLLDLDFGPILDK 254
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264
+ V+PR + +L SAT S+ +D L + L +P +++ KN++Q +I
Sbjct: 255 ILQVLPRERRTMLFSATMSTKLDNLTRAALQSPVRVSISS----SSYQTVKNLKQSYIFI 310
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
+ K +Y++ L+ E + +IFT TI+ R+ L G + L+ +L Q++RL
Sbjct: 311 PHKFKDIYLVYLVN-EFAGQTCIIFTRTINETARIAFLLRALGRSAIPLHGQLNQSARLG 369
Query: 325 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 384
L +F G D L+ATD RG+D +
Sbjct: 370 ALNKFRGGSRDILVATDVA---------------------------------ARGLDIPS 396
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
V V+N+++P ++ YVHR+GRT RA G ++S+V+ ++++++ I+ +G
Sbjct: 397 VDLVLNYDLPPDSKTYVHRVGRTARAGKAGVAISIVTQYDVEVYQRIEKALG 448
>gi|410630699|ref|ZP_11341386.1| ATP-dependent RNA helicase RhlE [Glaciecola arctica BSs20135]
gi|410149665|dbj|GAC18253.1| ATP-dependent RNA helicase RhlE [Glaciecola arctica BSs20135]
Length = 410
Score = 194 bits (494), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 138/406 (33%), Positives = 202/406 (49%), Gaps = 49/406 (12%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
+F L LD L A+ G PT IQQ +IP ILEGKD++A A+TG+GKT A+ LP+L
Sbjct: 2 NFSSLALDKSLTDAVKTLGYTAPTPIQQQAIPAILEGKDIMAGAQTGTGKTAAFALPILQ 61
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
+L + + ALVL PTREL QQVY + E QL + + +
Sbjct: 62 QLIKYTDAPRPI--RALVLTPTRELAQQVYKSFLRYAE----NTQLNLAVAYGGVSINPQ 115
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
+A+ DI+IATPG + ++ G S S L+ +V DEAD +L G++D++ +
Sbjct: 116 ISAIEKGADILIATPGRLLDHMTKG---SVDLS-QLQTIVFDEADRMLDMGFKDEINRIL 171
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
+ +P Q LL SAT + KL K +L+NP ++ EV D V+Q + +
Sbjct: 172 SRVPNKRQTLLFSATFDETIFKLSKTLLNNPVLI---EVND--RNAAASQVEQL-VYTVD 225
Query: 267 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
RD+ + + L K+ LIFT T A L + K GI++ ++ + Q +R +L
Sbjct: 226 RDRKRELTSFLIGSKNWKQVLIFTRTKQTADELAKEMCKDGIQTQSIHGDKSQGARERVL 285
Query: 327 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 386
EF G L+ATD RGID ++
Sbjct: 286 AEFKQGKIRALVATDV---------------------------------AARGIDIIDLK 312
Query: 387 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432
VIN+E+P A Y+HRIGRTGRA N G ++SL+SP E + E ++
Sbjct: 313 YVINYELPYVAEDYIHRIGRTGRAGNAGLAISLMSPSEKGLLEAVE 358
>gi|269469155|gb|EEZ80700.1| ATP-dependent RNA helicase RhlE [uncultured SUP05 cluster
bacterium]
Length = 434
Score = 194 bits (494), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 134/409 (32%), Positives = 206/409 (50%), Gaps = 48/409 (11%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
F +LGL ++ A+ ++G KP+ IQ+ SIP++L+GKD++A A+TG+GKT + LP+L
Sbjct: 2 GFSKLGLSDSILKAVKQQGYDKPSPIQEKSIPIVLDGKDLMAAAQTGTGKTAGFTLPIL- 60
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
+L ++ P + L+L PTREL QV V + + LK + + +
Sbjct: 61 QLLSKGKPTNSNQVRTLILTPTRELAAQVQDSVATYGK----HLPLKSTVVFGGVKINPQ 116
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
L G DI++ATPG + S ++ D L+I+V DEAD +L G+ D+K +
Sbjct: 117 MKKLRGGVDILVATPGRLLDLYSQNAVK----FDQLEIIVFDEADRMLDMGFIHDIKRIL 172
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
V+P Q L+ SAT S ++ KL K ++HNP EV K+V+Q WI +
Sbjct: 173 KVLPPKRQTLMFSATFSDEIRKLAKSLVHNPV-----EVSTTPRNTTVKSVKQ-WIHPVD 226
Query: 267 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
+ K +LT L + + L+F+ T A R+ L K GI +A ++ Q +R L
Sbjct: 227 KSKKQALLTKLIKDHSWYQVLVFSRTKHGANRIATQLGKRGITAAAIHGNKSQGARTRAL 286
Query: 327 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 386
+F G + L+ATD RGID +
Sbjct: 287 ADFKDGKVNVLVATDIA---------------------------------ARGIDIIELP 313
Query: 387 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
V+NF++P YVHRIGRTGRA + G ++SLVS DE+K +I+ +
Sbjct: 314 HVVNFDLPHVPEDYVHRIGRTGRAGSKGEAISLVSADEVKQLFDIERLI 362
>gi|384172779|ref|YP_005554156.1| ATP-dependent RNA helicase [Arcobacter sp. L]
gi|345472389|dbj|BAK73839.1| ATP-dependent RNA helicase [Arcobacter sp. L]
Length = 448
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 144/410 (35%), Positives = 204/410 (49%), Gaps = 50/410 (12%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF +LGL ++ A+ ++G PT IQ SIP+IL KDV+A A+TG+GKT + LPLL
Sbjct: 2 SFSKLGLCSEILRAIKEEGYTTPTPIQAQSIPVILLKKDVLAGAQTGTGKTAGFTLPLLQ 61
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
RL +S SK P AL+L PTREL QV V E + K + + +
Sbjct: 62 RLTKSTSKDSKY-PKALILTPTRELAAQVAQSV----ETYGKYLPFKSAVIFGGVGINPQ 116
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
+A L DI+IATPG + +S L ++ L+LDEAD +L G+ +D+K +
Sbjct: 117 KALLKKGVDIIIATPGRLLDLISQDSLN----LSKIEFLILDEADRMLDMGFINDIKKIL 172
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS- 265
A++P+ Q LL SAT S+++ KL +L +P ++ + + + VQQ
Sbjct: 173 AILPKQRQNLLFSATFSTEIKKLADGLLKSPILIEVAKANSTSHK-----VQQIVHHVDR 227
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
ER K L I + K + K+ L+FT T A +L L K I SA ++ Q +R
Sbjct: 228 ERKKELLIHLINKNDW--KQVLVFTRTKHGANKLSEALIKENITSAAIHGNKSQGARTKA 285
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
L++F G L+ATD RGID N+
Sbjct: 286 LDDFKEGKVRILVATDI---------------------------------AARGIDIDNL 312
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
VINFE+P A YVHRIGRTGRA N G ++SLV DE + I+ +
Sbjct: 313 PHVINFELPNVAEDYVHRIGRTGRAGNEGVAISLVCIDEHEYLFGIERLI 362
>gi|307729080|ref|YP_003906304.1| DEAD/DEAH box helicase [Burkholderia sp. CCGE1003]
gi|307583615|gb|ADN57013.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1003]
Length = 487
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 132/414 (31%), Positives = 210/414 (50%), Gaps = 54/414 (13%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
+F++ GL ++ A+ + G PT IQ +IP++L G+DV+ A+TG+GKT ++ LP++
Sbjct: 12 TFDQFGLAPDILKAVKESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 87 RLFNESSPKSKLAPA-----ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSM 141
RL ++S + +PA AL+L PTREL QV + V A + + + + +
Sbjct: 72 RLLPQAS--TSASPARHPVRALILTPTRELADQVAANVQAYAKHTALRSAVVFGGVDMNP 129
Query: 142 PASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDD 201
+ LR + +I+IATPG L V Q + ++ILVLDEAD +L G+ D
Sbjct: 130 QSEQLRRGV----EILIATPG----RLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPD 181
Query: 202 LKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW 261
L+ + ++P+ Q LL SAT S ++ KL L NP + + + NV Q
Sbjct: 182 LQRILNLLPKERQTLLFSATFSGEIKKLAATYLRNPQTIEV-----ARSNSTATNVTQIV 236
Query: 262 ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 321
+E DK ++ L++ E K+ ++F N+ A RL LE+ G+ + ++ + QN
Sbjct: 237 YEVAEGDKTGAVVQLIR-ERSLKQVIVFCNSKIGASRLARSLERDGVVATAIHGDRSQNE 295
Query: 322 RLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGID 381
R+ L+ F G + L+ATD RG+D
Sbjct: 296 RMQALDAFKRGEIEALVATDV---------------------------------AARGLD 322
Query: 382 FKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ VINF++P NA YVHRIGRTGRA +G ++SL SP+E K +I+ +
Sbjct: 323 IAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLADIEKLI 376
>gi|262168988|ref|ZP_06036682.1| ATP-dependent RNA helicase [Vibrio cholerae RC27]
gi|262022687|gb|EEY41394.1| ATP-dependent RNA helicase [Vibrio cholerae RC27]
Length = 448
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 134/410 (32%), Positives = 210/410 (51%), Gaps = 49/410 (11%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F++LGLD RL+ L ++ T IQQ +IPL + G+D++A +KTGSGKT A++LP+LH+
Sbjct: 3 FKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHK 62
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+ +K P L+LVPTREL +QVY E+ +++ G + +T +D
Sbjct: 63 SLKTKAFSAK-DPRGLILVPTRELAKQVYGELRSML----GGLSYTATLITGGENFNDQV 117
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL-S 206
ALA P ++ATPG + L L F + L+ LVLDEAD +L G+ +L+ + +
Sbjct: 118 KALARGPRFIVATPGRLADHLDHRSL----FLEGLETLVLDEADRMLDLGFAKELRRIHN 173
Query: 207 AVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
A R Q L+ SAT +DV+ + +L+ P + +G +E K++ Q + C
Sbjct: 174 AAKHRRRQTLMFSATLDHADVNDMAMELLNEPKRIA---IGVGSEE--HKDITQHFYLCD 228
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
D +L + + ++ +IFT T RL L K +K+ L+ L Q R I
Sbjct: 229 HLDHKEALLDRILADAEYRQVIIFTATRADTDRLTEKLNKNNLKAVALSGNLNQTQRNTI 288
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
+ +F +F L+ TD RG+D V
Sbjct: 289 MGQFERAVFKILVTTDVAS---------------------------------RGLDIPAV 315
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
VINF+MP++ YVHR+GRTGRA N G ++SLV P + + F+ +++F+
Sbjct: 316 THVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKRVEAFL 365
>gi|326476440|gb|EGE00450.1| ATP-dependent rRNA helicase RRP3 [Trichophyton tonsurans CBS
112818]
gi|326482119|gb|EGE06129.1| ATP-dependent rRNA helicase RRP3 [Trichophyton equinum CBS 127.97]
Length = 474
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 137/435 (31%), Positives = 221/435 (50%), Gaps = 56/435 (12%)
Query: 3 KSKEIPSKEVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILE 62
+ +E P ++++EE A+ + K+F++LG+ L A G + PT IQ SIPL L+
Sbjct: 30 RERETP----EESDEEPADTKAPKTFKDLGIIDSLCDACTSLGYKNPTPIQAESIPLALQ 85
Query: 63 GKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMAL 122
G+D+V A+TGSGKT A+ LP+L L + P LVL PTREL Q+ AL
Sbjct: 86 GRDLVGLAETGSGKTAAFALPILQALMEKPQPY-----FGLVLAPTRELAVQITEAFEAL 140
Query: 123 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DS 181
L + ++ + M +L P I++ATPG + L +K FS +
Sbjct: 141 GSL----ISVRCAVIVGGMDMISQSISLGKKPHIIVATPGRLLDHLE----NTKGFSLRN 192
Query: 182 LKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILT 241
LK LV+DEAD LL + L + V+PR + L SAT SS V+ L++ L NP ++
Sbjct: 193 LKYLVMDEADRLLDLDFGPVLDKILKVLPRERRTYLFSATLSSKVESLQRASLSNPLRVS 252
Query: 242 LPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKL 301
+ K + + + Q +I + K +Y++ +L E + +IFT T++ RL +
Sbjct: 253 ---ISSNKYQTV-STLLQSYIFIPHKYKDIYLVHILN-EFPGQTTIIFTRTVNETQRLSI 307
Query: 302 FLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRK 361
L G + L+ +L Q++RL L +F +G D L+ATD
Sbjct: 308 LLRALGFGAIPLHGQLSQSARLGALGKFRSGSRDILVATDV------------------- 348
Query: 362 SKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS 421
RG+D V V+NF++P ++ Y+HR+GRT RA +G ++S+V+
Sbjct: 349 --------------AARGLDIPAVDLVLNFDLPSDSKTYIHRVGRTARAGKSGRAISVVT 394
Query: 422 PDEMKIFEEIKSFVG 436
E++I++ I++ +G
Sbjct: 395 QYEVEIWQRIEAALG 409
>gi|308071203|ref|YP_003872808.1| ATP-dependent RNA helicase [Paenibacillus polymyxa E681]
gi|305860482|gb|ADM72270.1| Probable ATP-dependent RNA helicase [Paenibacillus polymyxa E681]
Length = 559
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 130/415 (31%), Positives = 202/415 (48%), Gaps = 58/415 (13%)
Query: 26 KSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLL 85
K+F LG++ V AL ++GI PT +QQ SIPL++EG+DV+A A TG+GKT A+LLP+L
Sbjct: 12 KNFAALGVEQHWVEALKEQGISSPTPVQQESIPLLMEGQDVIAEAHTGTGKTLAFLLPIL 71
Query: 86 HRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASD 145
+L + K P ALV+ PTREL Q+ E L + L ++ +
Sbjct: 72 QKLNLD-----KRHPQALVIAPTRELALQITEEAN---RLAATEPSLSLLAVYGGQDVER 123
Query: 146 LRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL 205
L G ++I TPG + L G L +K+LVLDEAD +L G+ +D++ +
Sbjct: 124 QLRKLKGGAQLIIGTPGRLLDHLRRGTLD----LGGIKMLVLDEADQMLHMGFLNDVETI 179
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVK----DEVIPKNVQQFW 261
+P Q +L SAT + + KL ++ ++ P DVK V ++Q
Sbjct: 180 LQEVPYRRQTMLFSATMPAGIRKLARVYMNEPV--------DVKVKSASSVPVSQIRQVV 231
Query: 262 ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 321
+ ++R K ++ +L + A+IF T A +L L++ G +S L+ +L QN
Sbjct: 232 VQTTDRGKQQALVDMLNTDR-PYLAVIFCRTKRRAAKLNEELQEMGFESGELHGDLSQNK 290
Query: 322 RLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGID 381
R +++ F L+ATD RG+D
Sbjct: 291 REQVMKAFREAKLQLLVATDV---------------------------------AARGLD 317
Query: 382 FKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
+ V V N++MPQ+A Y+HRIGRTGRA G +V+L +P ++ I+ G
Sbjct: 318 VEGVTHVFNYDMPQDAESYIHRIGRTGRAGGKGVAVTLATPRDVPELRNIQRVAG 372
>gi|147671861|ref|YP_001214917.1| DEAD/DEAH box helicase [Vibrio cholerae O395]
gi|227119242|ref|YP_002821137.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae O395]
gi|146314244|gb|ABQ18784.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae O395]
gi|227014692|gb|ACP10901.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae O395]
Length = 452
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 135/415 (32%), Positives = 211/415 (50%), Gaps = 49/415 (11%)
Query: 23 EEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLL 82
E F++LGLD RL+ L ++ T IQQ +IPL + G+D++A +KTGSGKT A++L
Sbjct: 2 ESTLQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVL 61
Query: 83 PLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMP 142
P+LH+ + +K P L+LVPTREL +QVY E+ +++ G + +T
Sbjct: 62 PMLHKSLKTKAFSAK-DPRGLILVPTRELAKQVYGELRSML----GGLSYTATLITGGEN 116
Query: 143 ASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 202
+D ALA P ++ATPG + L L F + L+ LVLDEAD +L G+ +L
Sbjct: 117 FNDQVKALARGPRFIVATPGRLADHLDHRSL----FLEGLETLVLDEADRMLDLGFAKEL 172
Query: 203 KAL-SAVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF 260
+ + +A R Q L+ SAT +DV+ + +L+ P + +G +E K++ Q
Sbjct: 173 RRIHNAAKHRRRQTLMFSATLDHADVNDMAMELLNEPKRIA---IGVGSEE--HKDITQH 227
Query: 261 WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 320
+ C D +L + + ++ +IFT T RL L K +K+ L+ L Q
Sbjct: 228 FYLCDHLDHKEALLDRILADAEYRQVIIFTATRADTDRLTEKLNKNNLKAVALSGNLNQT 287
Query: 321 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 380
R I+ +F +F L+ TD RG+
Sbjct: 288 QRNTIMGQFERAVFKILVTTDVAS---------------------------------RGL 314
Query: 381 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
D V VINF+MP++ YVHR+GRTGRA N G ++SLV P + + F+ +++F+
Sbjct: 315 DIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKRVEAFL 369
>gi|423199692|ref|ZP_17186275.1| hypothetical protein HMPREF1171_04307 [Aeromonas hydrophila SSU]
gi|404628948|gb|EKB25713.1| hypothetical protein HMPREF1171_04307 [Aeromonas hydrophila SSU]
Length = 415
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 146/421 (34%), Positives = 213/421 (50%), Gaps = 71/421 (16%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF +L L RL L + G PT +Q +IPLIL G+D++A A+TG+GKT A++LPLL
Sbjct: 5 SFADLALSPRLQQTLTELGYAAPTPVQAGAIPLILAGRDLMAGAQTGTGKTAAFVLPLLE 64
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMP---- 142
+L + + ALVLVPTREL QV+ V KG + LTS++
Sbjct: 65 QLLQHPASDALRPIRALVLVPTRELAVQVHESV---TRYAKG------IDLTSTLVYGGV 115
Query: 143 --ASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYED 200
A+ + A AG D++IATPG + L G L +L+ LV DEAD +L G+ D
Sbjct: 116 SIAAQVEALKAG-VDLLIATPGRLLDHLRQGALSLA----ALRHLVFDEADRMLDMGFMD 170
Query: 201 DLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNV--- 257
++KAL IP Q LL SAT ++ L K++L +P ++ EV P+N
Sbjct: 171 EIKALLKQIPADRQTLLFSATCDDNLFALSKVLLRDPALI----------EVAPRNTTAA 220
Query: 258 ---QQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILN 314
Q+ + S+R KL + +L ++ ALIF+ T A +L L K GI + +
Sbjct: 221 EVEQRVYTVDSDR-KLALVEHMLNVK-GWAPALIFSRTRQGADKLAQQLGKAGINALAFH 278
Query: 315 AELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEF 374
+L Q +R +L EF AG L+ATD
Sbjct: 279 GDLSQGAREKVLLEFRAGTLQALVATDVA------------------------------- 307
Query: 375 GVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 434
RG+D +++ VIN E P A YVHRIGRTGRA N G +++L SP++ + E++++
Sbjct: 308 --ARGLDITDLNYVINMEFPFVAEDYVHRIGRTGRAGNKGLAITLFSPEDAPLLEKVEAV 365
Query: 435 V 435
+
Sbjct: 366 L 366
>gi|392305118|emb|CCI71481.1| putative ATP-dependent RNA helicase DDX17 [Paenibacillus polymyxa
M1]
Length = 535
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 127/411 (30%), Positives = 201/411 (48%), Gaps = 50/411 (12%)
Query: 26 KSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLL 85
K+F LG++ V AL ++GI PT +QQ SIPL++EG+DV+A A TG+GKT A+LLP+L
Sbjct: 12 KNFTALGVEQHWVEALKEQGISAPTPVQQESIPLLMEGQDVIAEAHTGTGKTLAFLLPIL 71
Query: 86 HRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASD 145
+L + K P ALV+ PTREL Q+ E L + L ++ +
Sbjct: 72 QKLNLD-----KRHPQALVIAPTRELALQITEEAKC---LAAAEPSLSLLAVYGGQDVER 123
Query: 146 LRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL 205
L G ++I TPG + L G L +K+LVLDEAD +L G+ +D++ +
Sbjct: 124 QLRKLKGGAQLIIGTPGRLLDHLRRGTLD----LGGIKMLVLDEADQMLHMGFLNDVETI 179
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
+P Q +L SAT + + KL ++ ++ P + + V ++Q + +
Sbjct: 180 LQEVPYRRQTMLFSATMPAGIRKLARVYMNEPVDVKVKSA----SSVPVSQIRQVVVQTT 235
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
+R K ++ +L + A+IF T A +L L++ G +S L+ +L QN R +
Sbjct: 236 DRGKQQALVDMLNTDR-PYLAVIFCRTKRRASKLNEELQEMGFESGELHGDLSQNKREQV 294
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
++ F L+ATD RG+D + V
Sbjct: 295 MKAFREAKLQLLVATDV---------------------------------AARGLDVEGV 321
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
V N++MPQ+A Y+HRIGRTGRA G +V+L +P ++ I+ G
Sbjct: 322 THVFNYDMPQDAESYIHRIGRTGRAGGKGVAVTLATPRDVPELRNIQRVAG 372
>gi|358370127|dbj|GAA86739.1| ATP-dependent RNA helicase [Aspergillus kawachii IFO 4308]
Length = 832
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 136/414 (32%), Positives = 202/414 (48%), Gaps = 53/414 (12%)
Query: 18 EEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKT 77
E A A+ ++SF+E L ++ L PT IQ+ +IP+ L GKD+V A TGSGKT
Sbjct: 306 ESAMADAKRSFQEFNLSRPILRGLAGVNFSNPTPIQRKTIPVALLGKDIVGSAVTGSGKT 365
Query: 78 FAYLLPLLHRLF--NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVV 135
A+++P+L RL P S++A +L+PTREL Q Y+ L +
Sbjct: 366 AAFVVPILERLLFRPRKVPTSRVA----ILMPTRELAVQCYNVATKLATYT----DITFC 417
Query: 136 QLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLL 194
QL + L PD++IATPG + S SF+ D+L+ILVLDEAD +L
Sbjct: 418 QLVGGFSLREQENILKKRPDVIIATPGRFIDHMRN----SASFTVDTLEILVLDEADRML 473
Query: 195 SYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIP 254
G+ D+L + IP+ Q +L SAT + VDKL ++ L+ P L + D K
Sbjct: 474 EDGFADELNEILTTIPKSRQTMLFSATMTDTVDKLIRVGLNRPVRLMV----DAKKNTAV 529
Query: 255 KNVQQF-WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAIL 313
VQ+F + DK L L L EL + ++F A R+++ G+K+A L
Sbjct: 530 TLVQEFVRLRPGREDKRLGYLLYLCKELYTGRVIVFFRQKKEAHRVRIIFGLLGLKAAEL 589
Query: 314 NAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSE 373
+ + Q R+ +E F G +L+ATD L S
Sbjct: 590 HGSMSQEQRIKSVENFREGKAAFLLATD----------------------------LAS- 620
Query: 374 FGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 427
RG+D K V TVIN+E PQ+ Y+HR+GRT RA +G + ++ + + K+
Sbjct: 621 ----RGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKV 670
>gi|451852848|gb|EMD66142.1| hypothetical protein COCSADRAFT_179496 [Cochliobolus sativus
ND90Pr]
Length = 814
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 127/412 (30%), Positives = 204/412 (49%), Gaps = 54/412 (13%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF+ + L ++ L G +PT IQ ++P+ ++GKDVV A+TGSGKT A+L+P+L
Sbjct: 289 SFQAMSLSRPILRGLASVGFTEPTPIQSKAVPIAMQGKDVVGGAETGSGKTAAFLIPILE 348
Query: 87 RLF--NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
RL + P +++A + +PTREL Q ++ L + + +
Sbjct: 349 RLLYRQKKIPTTRVA----IFMPTRELAVQCFNVATKLASFT----DITFALMAGGFSSR 400
Query: 145 DLRAALAGPPDIVIATPG-CMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLK 203
+ A L PD+VIATPG + +T Q ++L+ILVLDEAD +L G+E L
Sbjct: 401 EQEAVLKTRPDVVIATPGRFIDHMHNTAAFQ----VENLEILVLDEADRMLEEGFESQLN 456
Query: 204 ALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-WI 262
+ IP+ Q +L SAT +S VDKL ++ + P L + D K + + Q+F +
Sbjct: 457 EILTTIPKSRQTMLFSATMTSSVDKLIRIGMDKPVRLMV----DAKKQTVKGLTQEFVRL 512
Query: 263 SCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 322
+ DK L L + ++ +K ++F A R+++ G+K++ L+ + Q R
Sbjct: 513 RQGKEDKRLAYLMYICEKIYTEKVIVFFRQKKEAHRVRVVFALCGLKASELHGNMSQEQR 572
Query: 323 LHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDF 382
+ +E F +G YL+ATD RG+D
Sbjct: 573 IQAVEAFRSGKSSYLLATDVAS---------------------------------RGLDI 599
Query: 383 KNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS-PDEMKIFEEIKS 433
KNV TVIN+E PQ Y+HR+GRT RA +G + +L + PD + + +K+
Sbjct: 600 KNVSTVINYEAPQTHEIYLHRVGRTARAGRSGRACTLAAEPDRKVVKQAVKA 651
>gi|330915742|ref|XP_003297149.1| hypothetical protein PTT_07463 [Pyrenophora teres f. teres 0-1]
gi|311330325|gb|EFQ94748.1| hypothetical protein PTT_07463 [Pyrenophora teres f. teres 0-1]
Length = 805
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 128/410 (31%), Positives = 198/410 (48%), Gaps = 50/410 (12%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF+ + L ++ L G +PT IQ ++P+ ++GKDVV A+TGSGKT A+L+P+L
Sbjct: 276 SFQAMSLSRPILRGLASVGFTEPTPIQNKAVPIAMQGKDVVGGAETGSGKTAAFLIPILE 335
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
RL PK + +PTREL Q ++ L + + D
Sbjct: 336 RLLYR--PKKVPTTRVAIFMPTRELAVQCFNVATKLASFT----DITFALMAGGFSTRDQ 389
Query: 147 RAALAGPPDIVIATPG-CMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL 205
A L PD+VIATPG + +T Q + L+ILVLDEAD +L G+E L +
Sbjct: 390 EAVLKTRPDVVIATPGRFIDHMHNTAAFQ----VEHLEILVLDEADRMLEEGFESQLNEI 445
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-WISC 264
IP+ Q +L SAT +S VDKL ++ + P L + D K + Q+F +
Sbjct: 446 LTTIPKSRQTMLFSATMTSSVDKLIRIGMDKPVRLMV----DAKKHTVAGLTQEFVRLRQ 501
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
+ DK L L + ++ +K ++F A R+++ G+K++ L+ + Q R+
Sbjct: 502 GKEDKRLAYLMYICEKIYTEKVIVFFRQKKEAHRVRVVFALCGLKASELHGNMSQEQRIQ 561
Query: 325 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 384
+E F +G YL+ATD RG+D KN
Sbjct: 562 SVEAFRSGKSAYLLATDVAS---------------------------------RGLDIKN 588
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS-PDEMKIFEEIKS 433
V TVIN+E PQ+ Y+HR+GRT RA +G + +L + PD + + +K+
Sbjct: 589 VSTVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKVVKQAVKA 638
>gi|387816135|ref|YP_005431630.1| RNA helicase [Marinobacter hydrocarbonoclasticus ATCC 49840]
gi|381341160|emb|CCG97207.1| RNA helicase [Marinobacter hydrocarbonoclasticus ATCC 49840]
Length = 443
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 142/416 (34%), Positives = 206/416 (49%), Gaps = 63/416 (15%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF LGL +LV A +G + P+ IQQ +IP +L GKDV+A A+TG+GKT + LPLL
Sbjct: 2 SFSSLGLSEQLVRATADQGYETPSPIQQQAIPAVLSGKDVMAAAQTGTGKTAGFTLPLLQ 61
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELC--KGQVQLKVVQLTSSMPAS 144
RL +P++ P AL+L PTREL QV+ V + K V V++ M
Sbjct: 62 RL--AENPRTGKGPRALILTPTRELAAQVHDSVNLYSKYVPTKAAVVFGGVKINPQM--M 117
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
LR L D+++ATPG + Q+ + ++ILVLDEAD +L G+ D++
Sbjct: 118 KLRKGL----DVLVATPGRLMDLYQ----QNAVRFNEVEILVLDEADRMLDMGFIRDIRK 169
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQ 259
+ A++P Q LL SAT +++ L + +L NP V+ EV +N V+Q
Sbjct: 170 ILALLPAKRQNLLFSATFCNEIRTLAQGLLDNP----------VQVEVAARNTTAEKVKQ 219
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+ K + L++ + + L+FT T A RL LEK GI +A ++ Q
Sbjct: 220 SVYPVDQSQKTALLSKLVR-DNDWDQVLVFTRTKHGANRLTQKLEKDGITAAAIHGNKSQ 278
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
+R L +F AG L+ATD RG
Sbjct: 279 GARTRALADFKAGEVRVLVATDI---------------------------------AARG 305
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+D K + V+NFE+P YVHRIGRTGRA +G ++SLVS DE K+ I+ +
Sbjct: 306 LDIKQLPQVVNFELPNVPEDYVHRIGRTGRAGESGHALSLVSADEGKLLAGIEKLI 361
>gi|299829301|ref|NP_001015005.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Rattus norvegicus]
gi|149049184|gb|EDM01638.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47, isoform CRA_a [Rattus
norvegicus]
Length = 455
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 134/424 (31%), Positives = 218/424 (51%), Gaps = 53/424 (12%)
Query: 14 QAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTG 73
+A + AE EE K+F++LG+ L A ++ G KPT IQ +IPL L+G+D++ A+TG
Sbjct: 12 EALQTAAEEEETKTFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETG 71
Query: 74 SGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLK 133
SGKT A+ LP+L+ L +P+ ALVL PTREL Q+ + AL + ++
Sbjct: 72 SGKTGAFALPILNALLE--TPQRLF---ALVLTPTRELAFQISEQFEAL----GSSIGVQ 122
Query: 134 VVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADL 192
+ + + ALA P IVIATPG + L +K F+ +LK LV+DEAD
Sbjct: 123 CAVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLE----NTKGFNLRALKYLVMDEADR 178
Query: 193 LLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEV 252
+L+ +E ++ + VIPR + L SAT + V KL++ L NP + K +
Sbjct: 179 ILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQT 234
Query: 253 IPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAI 312
+ K +QQ+++ + K Y++ +L EL +IF +T + R L L G +
Sbjct: 235 VEK-LQQYYLFIPSKFKDTYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIP 292
Query: 313 LNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDS 372
L+ ++ Q+ RL L +F A L+ATD
Sbjct: 293 LHGQMSQSKRLGSLNKFKAKARSILLATDVAS---------------------------- 324
Query: 373 EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432
RG+D +V V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+
Sbjct: 325 -----RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIE 379
Query: 433 SFVG 436
+G
Sbjct: 380 HLIG 383
>gi|154282923|ref|XP_001542257.1| 2-isopropylmalate synthase [Ajellomyces capsulatus NAm1]
gi|150410437|gb|EDN05825.1| 2-isopropylmalate synthase [Ajellomyces capsulatus NAm1]
Length = 1466
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 149/498 (29%), Positives = 238/498 (47%), Gaps = 70/498 (14%)
Query: 26 KSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLL 85
KSF+ L ++ L G PT IQ+ +IP+ L GKDVV A TGSGKT A+++P+L
Sbjct: 305 KSFQAFSLSRPILRGLTSVGFTTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIIPIL 364
Query: 86 HRLFNESS--PKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPA 143
RL P S++A +L+PTREL Q Y+ L + QL
Sbjct: 365 ERLLYRPRKVPTSRVA----ILMPTRELAVQCYNVATKLATF----TDITFCQLVGGFSL 416
Query: 144 SDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDL 202
+ L PD++IATPG + S SF+ D+L+ILVLDEAD +L G+ D+L
Sbjct: 417 REQENILKKRPDVIIATPGRFIDHMR----NSASFTVDTLEILVLDEADRMLEDGFADEL 472
Query: 203 KALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-- 260
+ IP+ Q +L SAT +++VDKL ++ L P L + D K + + +Q+F
Sbjct: 473 NEILTTIPKSRQTMLFSATMTNNVDKLIRVGLSRPVRLMV----DAKKQTVGTLIQEFVR 528
Query: 261 WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 320
E +L Y++ L K + + + ++F + A R+++ G+K L+ + Q
Sbjct: 529 LRPGREEKRLGYLIVLCK-NIYKDRVIVFFRSKKEAHRVRIIFGLLGLKVTELHGSMSQE 587
Query: 321 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 380
R+ +E F G +L+ATD RG+
Sbjct: 588 QRIKSVESFRDGKVSFLLATDVAS---------------------------------RGL 614
Query: 381 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDEN 440
D K V TVIN+E PQ+ A Y+HR+GRT RA +G + +L + + K+ +K+ V
Sbjct: 615 DIKGVETVINYEAPQSHAIYLHRVGRTARAGRSGRACTLAAEPDRKV---VKAAVKTGRA 671
Query: 441 EDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEV 500
+ + I++ L + A E+ ++ A+ + LR E + +A EV
Sbjct: 672 QGAKIVS---RLIETA-EADKWAAKVEEMQEEVQEI-------LREEKEEKQLAQAEMEV 720
Query: 501 NPKDLDLLKHDKDLSKKP 518
+ +LL H+K++ +P
Sbjct: 721 T-RGSNLLNHEKEIMSRP 737
>gi|429852313|gb|ELA27456.1| ATP-dependent rRNA helicase rrp3 [Colletotrichum gloeosporioides
Nara gc5]
Length = 476
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 139/439 (31%), Positives = 216/439 (49%), Gaps = 61/439 (13%)
Query: 8 PSKEVKQAEEEEAEAEEE---------KSFEELGLDLRLVHALNKKGIQKPTLIQQASIP 58
P + V+ E E E EE+ K+F++LG+ LV A ++ G PT IQ SIP
Sbjct: 26 PDESVESTSEPEQEPEEDVTANKAESAKTFKDLGIVDSLVEACDRLGYTNPTPIQAQSIP 85
Query: 59 LILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSE 118
L+ +DV+ A+TGSGKT A+ LP++ L ++ S LVL PTREL Q+ +
Sbjct: 86 HALQNRDVIGLAETGSGKTAAFALPIIQALLDKPS-----HLFGLVLAPTRELAAQIAAS 140
Query: 119 VMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSF 178
AL L V L+V + + AL P IV+ATPG + L ++K F
Sbjct: 141 FEALGSL----VNLRVAVIVGGLDMVAQAIALGKKPHIVVATPGRLVDHLE----KTKGF 192
Query: 179 S-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNP 237
S SLK LV+DEAD LL + + + IPR + L SAT SS ++ L++ L +P
Sbjct: 193 SLRSLKYLVMDEADRLLDMDFGPSIDKILKFIPRERRTFLFSATMSSKIESLQRASLRDP 252
Query: 238 YILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAF 297
+++ + +N +I C K Y++ L+ E KK ++FT T+
Sbjct: 253 VRISISSSSHQTVSTLIQN----YIFCPHNKKDTYLVYLVN-EYSGKKIVLFTRTVTETQ 307
Query: 298 RLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHV 357
RL + L G + ++ +L Q +RL L +F AG D L+ATD
Sbjct: 308 RLAILLRTLGFGAIPIHGQLNQTARLGALNKFRAGSRDILVATDVA-------------- 353
Query: 358 DSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASV 417
RG+D V VINF++P ++ YVHR+GRT RA +G ++
Sbjct: 354 -------------------ARGLDIPLVDVVINFDIPSDSKTYVHRVGRTARAGKSGKAI 394
Query: 418 SLVSPDEMKIFEEIKSFVG 436
++++ +++I+ I++ +G
Sbjct: 395 TIMTQYDLEIYLRIEAALG 413
>gi|219122480|ref|XP_002181572.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217406848|gb|EEC46786.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 467
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 144/414 (34%), Positives = 203/414 (49%), Gaps = 60/414 (14%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F +L L L+ + G KPT IQ A IPL L G+D+ A A TGSGKT A+LLP+L R
Sbjct: 1 FNQLSLSRPLLRGVAAMGFVKPTPIQAAVIPLALAGRDICASAVTGSGKTAAFLLPILER 60
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTS-SMPASDL 146
L + S ++K A++L PTREL Q + + + + L V + + A++L
Sbjct: 61 LLHRYSGRTK----AIILTPTRELAAQCLGMLTSFAQFTNLRASLIVGGAKNVNAQAAEL 116
Query: 147 RAALAGPPDIVIATPGCMPKCL--STGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
R+ PD+++ATPG + + S GV + D ++ILVLDEAD LL G++D++
Sbjct: 117 RS----RPDVIVATPGRLLDHITNSAGV----TLED-IEILVLDEADRLLDLGFQDEVHE 167
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD-EVIPKNVQQFWI- 262
L P Q LL SAT ++ VD L +L + P + + + + D EV P+ Q+F
Sbjct: 168 LVKACPVQRQTLLFSATMNTKVDDLIQLSMKRPVRVRISDKANSMDIEVAPRLEQEFVRV 227
Query: 263 -----SCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAEL 317
+ LL +LT +K+ ++F +T A RL + GIK A L+ L
Sbjct: 228 RAGNEGANREGMLLALLT----RTFKKQTIVFFDTKAAAHRLMILCGLCGIKCAELHGNL 283
Query: 318 PQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVV 377
Q RL LEEF G D L+ATD
Sbjct: 284 SQQQRLTALEEFRKGDVDVLLATDLA---------------------------------A 310
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 431
RG+D V TVINFEMP A YVHRIGRT RA G S +L+ + +E+
Sbjct: 311 RGLDIDRVKTVINFEMPSQVATYVHRIGRTARAGRGGRSCTLIGEGRRHLMKEL 364
>gi|410953778|ref|XP_003983547.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
DDX27 [Felis catus]
Length = 920
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 141/417 (33%), Positives = 200/417 (47%), Gaps = 49/417 (11%)
Query: 17 EEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGK 76
E+ ++ +E SF+++ L L+ A+ G ++PT IQ+A IP+ L GKD+ A A TG+GK
Sbjct: 332 EDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGK 391
Query: 77 TFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQ 136
T A+ LP+L RL + P+ LVLVPTREL QV+S L + C L V
Sbjct: 392 TAAFALPVLERLIYK--PRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGG 449
Query: 137 LTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLS 195
L + LRAA PDI+IATPG + L SF S+++L+LDEAD +L
Sbjct: 450 LDVKSQEAALRAA----PDILIATPGRLIDHLHN----CPSFHLSSIEVLILDEADRMLD 501
Query: 196 YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK 255
+E+ +K + + Q +L SAT + +V L + L NP + + + +V P
Sbjct: 502 EYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFV----NSNTDVAPF 557
Query: 256 NVQQF-WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILN 314
Q+F I + I+ L ++FT T A R+ + L G++ L+
Sbjct: 558 LRQEFVRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELH 617
Query: 315 AELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEF 374
L Q RL L F D L+ATD
Sbjct: 618 GNLSQTQRLEALRRFKDEQIDILVATDV-------------------------------- 645
Query: 375 GVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 431
RG+D + V TVINF MP YVHR+GRT RA G SVSLV +E K+ +EI
Sbjct: 646 -AARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEI 701
>gi|315043240|ref|XP_003170996.1| ATP-dependent RNA helicase drs1 [Arthroderma gypseum CBS 118893]
gi|311344785|gb|EFR03988.1| ATP-dependent RNA helicase drs1 [Arthroderma gypseum CBS 118893]
Length = 814
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 138/427 (32%), Positives = 207/427 (48%), Gaps = 54/427 (12%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF+ L L ++ L G PT IQ+ +IP+ L GKDVV A TGSGKT A+++P+L
Sbjct: 300 SFQNLSLSRPILRGLASVGFSAPTPIQKKTIPVALLGKDVVGGAVTGSGKTGAFIVPILE 359
Query: 87 RLFNESS--PKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
RL P S++A +L+PTREL Q Y+ L + QL
Sbjct: 360 RLLYRPRKVPTSRVA----ILMPTRELAVQCYNVATKLATFT----DITFCQLVGGFSLR 411
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLK 203
+ L PD++IATPG + S SF+ D+L+ILVLDEAD +L G+ ++L
Sbjct: 412 EQENILKKRPDVIIATPGRFIDHMRN----SASFTVDTLEILVLDEADRMLEDGFAEELN 467
Query: 204 ALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-WI 262
+ IP+ Q +L SAT ++ VDKL ++ L+ P L + D K + + VQ+F +
Sbjct: 468 EILTTIPKSRQTMLFSATMTNSVDKLIRVGLNKPVRLMV----DSKKQTVGTLVQEFVRL 523
Query: 263 SCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 322
DK L L L + + ++F A R+++ G+K+A L+ + Q R
Sbjct: 524 RPGREDKRLGYLMFLCKTVYTNRVIVFFRQKKEAHRVRIIFGLMGLKAAELHGSMSQEQR 583
Query: 323 LHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDF 382
+ +E+F YL+ATD L S RG+D
Sbjct: 584 IKSVEDFRDAKVSYLLATD----------------------------LAS-----RGLDI 610
Query: 383 KNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS-PDEMKIFEEIKSFVGDDENE 441
K V TVIN+E PQ+ Y+HR+GRT RA +G + ++ + PD + E +K+
Sbjct: 611 KGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKEAVKAGRAQGAKI 670
Query: 442 DSNIIAP 448
S +I P
Sbjct: 671 VSRVIEP 677
>gi|37677117|ref|NP_937513.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
gi|37201662|dbj|BAC97483.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
Length = 402
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 143/412 (34%), Positives = 212/412 (51%), Gaps = 52/412 (12%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF +LGL L AL+ G KPT IQ +IP+ILEG+D++A A+TG+GKT +++LP+L
Sbjct: 6 SFTQLGLCASLTDALDTLGYPKPTRIQTQAIPVILEGQDLIAAAQTGTGKTASFVLPMLE 65
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQ-VQLKVVQLTSSMPASD 145
+L + + K K AL+LVPTREL QV ++ GQ + L+ + + +
Sbjct: 66 KLRHGQTQKKKRI-RALILVPTRELAIQVDEKIKQY-----GQNLALRSLAMFGGVDEKT 119
Query: 146 LRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL 205
+ AL DI++ATPG + Q + + +++LVLDEAD +L G+ DD+ +
Sbjct: 120 QKQALIEGLDILVATPGRLLDMYG----QRAVYFEEIEMLVLDEADRMLDMGFIDDINKI 175
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
+P Q LL SAT S+ V L K +HNP+ E+ + N++Q WI
Sbjct: 176 LDRLPENIQHLLFSATLSNKVRDLAKSAIHNPF-----EISIAAKQASKSNIEQ-WIITV 229
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
++D+ +L+ L E + LIF T A +L LEK GI + ++ Q R +
Sbjct: 230 DKDQKSALLSHLIKENQWDQTLIFIETKHGAAKLVSQLEKRGIVAEAFHSGRSQAVREQL 289
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGV-VRGIDFKN 384
LE+F AG YL++T GV RGID +
Sbjct: 290 LEDFKAGKIKYLVST----------------------------------GVAARGIDIEA 315
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
+ V+N+++P A YVHRIGRTGRA G ++SLVS D K I+S +G
Sbjct: 316 LPRVVNYDLPFPADEYVHRIGRTGRANAKGEAISLVSKDNFKNLCMIESRLG 367
>gi|342889281|gb|EGU88436.1| hypothetical protein FOXB_01039 [Fusarium oxysporum Fo5176]
Length = 797
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 140/416 (33%), Positives = 209/416 (50%), Gaps = 52/416 (12%)
Query: 16 EEEEAEAEEE-KSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGS 74
EEEEA ++ SF+ + L ++ L G KPT IQ SIP+ L GKD+V A TGS
Sbjct: 247 EEEEASGKKSASSFQAMSLSRPILRGLATVGFSKPTPIQAKSIPIALMGKDLVGGAVTGS 306
Query: 75 GKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKV 134
GKT A+++P+L RL PK +VL PTREL Q ++ L + L V
Sbjct: 307 GKTGAFIVPILERLLYR--PKKIPTTRVVVLTPTRELAIQCHAVATKLAAFTDIKFTLAV 364
Query: 135 VQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLL 193
L S+ A ++ L PD++IATPG + S SFS D+++I+VLDEAD +
Sbjct: 365 GGL--SLKAQEVELKLR--PDVIIATPGRFIDHMRN----SASFSVDTVEIMVLDEADRM 416
Query: 194 LSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVI 253
L G+ D+L + +P+ Q +L SAT +S VD+L K+ L+ P + + D + + +
Sbjct: 417 LEDGFADELNEILTTLPKSRQTMLFSATMTSTVDRLIKIGLNKPARVMV----DSQKKTV 472
Query: 254 PKNVQQF--WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 311
VQ+F E ++ Y+ + K L +++ +IF A R ++ G+ A
Sbjct: 473 TTLVQEFVRLRPGREEKRMGYLAHVCK-NLYKERVIIFFRQKKEAHRARIIFGLLGLSCA 531
Query: 312 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLD 371
L+ + Q R+ +E+F G YL+ATD L
Sbjct: 532 ELHGSMNQTQRISSVEDFRDGKVAYLLATD----------------------------LA 563
Query: 372 SEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 427
S RG+D K V TVIN+E PQ+ YVHR+GRT RA G +++L S + K+
Sbjct: 564 S-----RGLDIKGVDTVINYEAPQSLEIYVHRVGRTARAGRKGTALTLASETDRKV 614
>gi|122692565|ref|NP_001073740.1| probable ATP-dependent RNA helicase DDX27 [Bos taurus]
gi|142980808|sp|A1A4H6.1|DDX27_BOVIN RecName: Full=Probable ATP-dependent RNA helicase DDX27; AltName:
Full=DEAD box protein 27
gi|119223998|gb|AAI26498.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Bos taurus]
gi|296481114|tpg|DAA23229.1| TPA: probable ATP-dependent RNA helicase DDX27 [Bos taurus]
Length = 765
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 142/417 (34%), Positives = 200/417 (47%), Gaps = 49/417 (11%)
Query: 17 EEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGK 76
E+ ++ +E SF+++ L L+ A+ G ++PT IQ+A IP+ L GKD+ A A TG+GK
Sbjct: 178 EDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGK 237
Query: 77 TFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQ 136
T A+ LP+L RL + P+ LVLVPTREL QV+S L + C L V
Sbjct: 238 TAAFALPVLERLIYK--PRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGG 295
Query: 137 LTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLS 195
L + LRAA PDI+IATPG + L SF S+++L+LDEAD +L
Sbjct: 296 LDVKSQEAALRAA----PDILIATPGRLIDHLHN----CPSFHLSSIEVLILDEADRMLD 347
Query: 196 YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK 255
+E+ +K + + Q +L SAT + +V L + L NP + + D V P
Sbjct: 348 EYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTD----VAPF 403
Query: 256 NVQQFW-ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILN 314
Q+F I + I+ L + ++FT T A R+ + L G++ L+
Sbjct: 404 LRQEFIRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELH 463
Query: 315 AELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEF 374
L Q RL L F D L+ATD
Sbjct: 464 GNLSQTQRLEALRRFKDEQIDILVATD--------------------------------- 490
Query: 375 GVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 431
RG+D + V TVINF MP YVHR+GRT RA G SVSLV +E K+ +EI
Sbjct: 491 VAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEI 547
>gi|411010727|ref|ZP_11387056.1| ATP-dependent RNA helicase RhlE [Aeromonas aquariorum AAK1]
Length = 415
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 142/414 (34%), Positives = 208/414 (50%), Gaps = 57/414 (13%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF +L L RL L + G PT +Q ++IP+IL G+D++A A+TG+GKT A++LPLL
Sbjct: 5 SFADLALSPRLQQTLTELGYVAPTPVQASAIPVILAGRDLMAGAQTGTGKTAAFVLPLLE 64
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
+L + + ALVLVPTREL QV+ V KG + A+ +
Sbjct: 65 QLLQHPTSDAPRPIRALVLVPTRELAVQVHESV---TRYAKGTDLTSTLVYGGVSIAAQV 121
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
A AG D++IATPG + L G L +L+ LV DEAD +L G+ D++KAL
Sbjct: 122 EALKAG-VDLLIATPGRLLDHLRQGALSLA----ALRHLVFDEADRMLDMGFMDEIKALL 176
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQFW 261
IP Q LL SAT ++ L K++L +P ++ EV P+N V+Q
Sbjct: 177 KQIPADRQTLLFSATCDDNLFALSKVLLRDPALI----------EVAPRNTTAAEVEQRV 226
Query: 262 ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 321
+ KL + +LK++ ALIF+ T A +L L K GI + + +L Q +
Sbjct: 227 YTVDGDRKLALVEHMLKVK-GWAPALIFSRTRQGADKLAQQLGKTGINALAFHGDLSQGA 285
Query: 322 RLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGID 381
R +L EF AG L+ATD RG+D
Sbjct: 286 REKVLLEFRAGTLQALVATDVA---------------------------------ARGLD 312
Query: 382 FKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+++ VIN E P A YVHRIGRTGRA N G +++L SP++ + E++++ +
Sbjct: 313 ITDLNYVINMEFPFVAEDYVHRIGRTGRAGNKGLAITLFSPEDAPLLEKVEAVL 366
>gi|255079330|ref|XP_002503245.1| predicted protein [Micromonas sp. RCC299]
gi|226518511|gb|ACO64503.1| predicted protein [Micromonas sp. RCC299]
Length = 605
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 145/495 (29%), Positives = 239/495 (48%), Gaps = 69/495 (13%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
+F EL L LV A G PT IQ A +PL L G+D+ RA TGSGKT A++LP L
Sbjct: 151 NFTELNLSRPLVKACGALGYASPTPIQAAVVPLALTGRDICGRAVTGSGKTAAFMLPCLE 210
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
R+ + PK A LVLVPTREL QV+ L + + L V L++++ A+ L
Sbjct: 211 RMLHR-GPKPVAATHVLVLVPTRELAVQVHQMTERLAQFTSVRAALVVGGLSANVQATSL 269
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKAL 205
R+ P++V+ATPG L V + S + L LVLDEAD LL G+ ++++ +
Sbjct: 270 RS----RPEVVVATPG----RLIDHVRNTHSVGLEDLATLVLDEADRLLEMGFLEEIREI 321
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ-QFWISC 264
P+ Q +L SAT +S V++L + + NP L+ ++G + + ++ + +
Sbjct: 322 VRHCPKRRQTMLFSATLTSGVEELAEFSMKNPARLSADQIGTTPGTLTEEVLRLRPGAAA 381
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
+ LL I+ K+ +IF+ T A RLK+ + G+K+ L+ +L Q RL
Sbjct: 382 MKEAHLLAIVA----RTFTKRCIIFSRTKQQAHRLKIIMGIHGLKACELHGDLTQTQRLA 437
Query: 325 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 384
LEEF G +++ATD RG+D
Sbjct: 438 ALEEFRTGEATHMVATDV---------------------------------AARGLDIAG 464
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSN 444
V V++++ P+ A Y+HR+GRT RA G +++ + + K+ + + S
Sbjct: 465 VDAVVSYDAPRTLASYLHRVGRTARAGRKGTALTFMEESDRKLIKAVS-------KRGSK 517
Query: 445 IIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDL-RNEILNSEKLKAHFEVNPK 503
++A L + VE + E + +++ ++ + E + L R E+ E +KA
Sbjct: 518 LVARS--LPTHVVEDFHAKIEGMGEAIKEVEMEERAEKHLARAEM---EAIKAE------ 566
Query: 504 DLDLLKHDKDLSKKP 518
+L++H K++ +P
Sbjct: 567 --NLMEHQKEIHSRP 579
>gi|54302911|ref|YP_132904.1| ATP-dependent RNA helicase RhlE [Photobacterium profundum SS9]
gi|46916335|emb|CAG23104.1| putative ATP-dependent RNA helicase RhlE [Photobacterium profundum
SS9]
Length = 471
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 141/415 (33%), Positives = 204/415 (49%), Gaps = 60/415 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF LGL ++ A+ K+G + P+ IQ +IP ++EGKDV+A A+TG+GKT A+ LP+L
Sbjct: 8 SFASLGLSAPILEAVTKQGYETPSPIQAQAIPAVIEGKDVMAAAQTGTGKTAAFTLPVLE 67
Query: 87 RLFNESSPKSKLAPA-ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASD 145
RL N P+ K ALVL PTREL QV V L + L + + +
Sbjct: 68 RLSN--GPRVKPNQVRALVLTPTRELAAQVAESVA----LYAKNLPLSSAVVFGGVKINP 121
Query: 146 LRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL 205
L D+++ATPG + + Q D +++LVLDEAD +L G+ D++ L
Sbjct: 122 QMMRLRQGADVLVATPGRLLDLYN----QRAVRFDQIEVLVLDEADRMLDMGFIRDIRKL 177
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQF 260
A +P+ Q LL SAT S ++ +L K +++NP V+ V P+N V+Q
Sbjct: 178 LAAMPKQRQNLLFSATFSDEIRQLAKGLVNNP----------VEISVTPRNATAPTVKQ- 226
Query: 261 WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 320
WI ++ + +LT L E + L+FT T A RL LE GIK+A ++ Q
Sbjct: 227 WICPVDKSRKANLLTKLLKENNWGQVLVFTKTKHGANRLTTHLEGRGIKAAAIHGNKSQG 286
Query: 321 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 380
+R L F + L+ATD RG+
Sbjct: 287 ARTKALANFKSNEIQVLVATDI---------------------------------AARGL 313
Query: 381 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
D + + V+NFE+P A YVHRIGRTGRA G ++SLV DE K I+ +
Sbjct: 314 DIEQLPQVVNFELPHVAEDYVHRIGRTGRAGCEGQAISLVCADEYKDLAAIERLI 368
>gi|395334307|gb|EJF66683.1| DEAD-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 773
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 142/424 (33%), Positives = 206/424 (48%), Gaps = 49/424 (11%)
Query: 10 KEVKQA--EEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVV 67
KE K A + E +E SF + L ++ +L G PT IQ A+IP+ L GKDVV
Sbjct: 169 KERKAAFFDSESGPSEAHTSFLSMNLSRPIIKSLTTLGFTTPTPIQAATIPVALLGKDVV 228
Query: 68 ARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCK 127
A TGSGKT A+++P+L RL K A LVLVPTREL Q + L
Sbjct: 229 GNAVTGSGKTAAFIIPMLERLMYRDRGKKAAATRCLVLVPTRELGVQCFEVGTKLAAHTD 288
Query: 128 GQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILV 186
+ L V L+ ++LR PD+VIATPG L + S +F+ D+L ILV
Sbjct: 289 IRFALVVGGLSIKAQEANLRTR----PDVVIATPG----RLIDHIRNSPTFTLDALDILV 340
Query: 187 LDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVG 246
LDEAD +L G+ D+L + P Q +L SAT + VD+L ++ L+ P L +
Sbjct: 341 LDEADRMLEDGFADELTEIIKSCPTSRQTMLFSATMTDSVDELVRMSLNKPVRLFV---- 396
Query: 247 DVKDEVIPKNVQQF-WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEK 305
D K +Q+F + + + +L L + + +IF + +A ++++
Sbjct: 397 DPKRATARGLLQEFVRVRAGKEAERSALLVALCKRTFKSRVIIFFRSKKLAHQMRIVFRL 456
Query: 306 FGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKH 365
+K L+ +L Q RL L++F G DYL+ATD
Sbjct: 457 LDMKCDELHGDLSQEQRLKALQQFRDGHVDYLMATD------------------------ 492
Query: 366 PKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM 425
L S RG+D K + TVIN++MP A Y+HR+GRT RA G SV+LV +
Sbjct: 493 ----LAS-----RGLDIKGIETVINYDMPGQLAQYLHRVGRTARAGKKGRSVTLVGEADR 543
Query: 426 KIFE 429
K+ +
Sbjct: 544 KMLK 547
>gi|127513380|ref|YP_001094577.1| DEAD/DEAH box helicase [Shewanella loihica PV-4]
gi|126638675|gb|ABO24318.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
Length = 460
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 137/410 (33%), Positives = 216/410 (52%), Gaps = 49/410 (11%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F + LD RL+ +L GI PT IQ SIP+ L G+D++A +KTGSGKT A+LLP + R
Sbjct: 16 FSDFSLDKRLLTSLEHMGIDTPTEIQTQSIPVGLSGRDLMASSKTGSGKTLAFLLPAMQR 75
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+ + SK P L+L+PTREL QVYS++ L+ Q K +++ +D
Sbjct: 76 VI-ATKALSKRDPRVLILLPTRELATQVYSQLRLLV----ANTQYKAIKILGGENFNDQA 130
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS- 206
ALA P V+ATPG + L+ Q + + L++L+LDEAD +L G+ + L+A++
Sbjct: 131 KALARDPHFVVATPGRLADHLA----QRHLYLNGLELLILDEADRMLDLGFAEQLRAINQ 186
Query: 207 AVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
A + Q L+ SAT ++++ +L P + + V+++ I + + + S
Sbjct: 187 AADHKRRQTLMFSATLDHGQINEIAAELLKEPEHVAIG-ASHVENQDIAQKI-YLCDNLS 244
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
+++LL LL+LE K+ +IFT T RL L + G ++ L+ EL Q +R I
Sbjct: 245 HKEQLLT--RLLQLE-PHKQVIIFTATRGDTDRLAGVLAEQGFSTSSLSGELKQAARNQI 301
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
+++F+ G L+ TD RG+D NV
Sbjct: 302 MDQFSRGQQQILVTTDVAS---------------------------------RGLDLLNV 328
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
VINF+MP+ A Y+HRIGRTGRA G ++SLV P + F+++++F+
Sbjct: 329 SLVINFDMPKFAEEYIHRIGRTGRAGAKGDAISLVGPKDWVNFKQVQNFL 378
>gi|310644435|ref|YP_003949194.1| DEAD/DEAH box helicase [Paenibacillus polymyxa SC2]
gi|309249386|gb|ADO58953.1| DEAD/DEAH box helicase domain protein [Paenibacillus polymyxa SC2]
Length = 525
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 130/415 (31%), Positives = 202/415 (48%), Gaps = 58/415 (13%)
Query: 26 KSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLL 85
K+F LG++ V AL ++GI PT +QQ SIPL++EG+DV+A A TG+GKT A+LLP+L
Sbjct: 2 KNFTALGVEQHWVEALKEQGISAPTPVQQESIPLLMEGQDVIAEAHTGTGKTLAFLLPIL 61
Query: 86 HRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASD 145
+L + K P ALV+ PTREL Q+ E L + L ++ +
Sbjct: 62 QKLNLD-----KRHPQALVIAPTRELALQITEEAKC---LAAAEPSLSLLAVYGGQDVER 113
Query: 146 LRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL 205
L G ++I TPG + L G L +K+LVLDEAD +L G+ +D++ +
Sbjct: 114 QLRKLKGGAQLIIGTPGRLLDHLRRGTLD----LGGIKMLVLDEADQMLHMGFLNDVETI 169
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVK----DEVIPKNVQQFW 261
+P Q +L SAT + + KL ++ ++ P DVK V ++Q
Sbjct: 170 LQEVPYRRQTMLFSATMPAGIRKLARVYMNEPV--------DVKVKSASSVPVSQIRQVV 221
Query: 262 ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 321
+ ++R K ++ +L + A+IF T A +L L++ G +S L+ +L QN
Sbjct: 222 VQTTDRGKQQALVDMLNTDR-PYLAVIFCRTKRRASKLNEELQEMGFESGELHGDLSQNK 280
Query: 322 RLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGID 381
R +++ F L+ATD RG+D
Sbjct: 281 REQVMKAFREAKLQLLVATDV---------------------------------AARGLD 307
Query: 382 FKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
+ V V N++MPQ+A Y+HRIGRTGRA G +V+L +P ++ I+ G
Sbjct: 308 VEGVTHVFNYDMPQDAESYIHRIGRTGRAGGKGVAVTLATPRDVPELRNIQRVAG 362
>gi|27229058|ref|NP_080636.2| probable ATP-dependent RNA helicase DDX47 [Mus musculus]
gi|52782790|sp|Q9CWX9.2|DDX47_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX47; AltName:
Full=DEAD box protein 47
gi|26345792|dbj|BAC36547.1| unnamed protein product [Mus musculus]
gi|26368455|dbj|BAB26843.2| unnamed protein product [Mus musculus]
gi|66365081|gb|AAH95944.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Mus musculus]
gi|124297422|gb|AAI32243.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Mus musculus]
gi|124298172|gb|AAI32245.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Mus musculus]
gi|148678592|gb|EDL10539.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47, isoform CRA_b [Mus
musculus]
Length = 455
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 134/423 (31%), Positives = 217/423 (51%), Gaps = 53/423 (12%)
Query: 15 AEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGS 74
A + AE EE K+F++LG+ L A ++ G KPT IQ +IPL L+G+D++ A+TGS
Sbjct: 13 ALQTAAEEEETKTFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGS 72
Query: 75 GKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKV 134
GKT A+ LP+L+ L +P+ ALVL PTREL Q+ + AL + ++
Sbjct: 73 GKTGAFALPILNALLE--TPQRLF---ALVLTPTRELAFQISEQFEAL----GSSIGVQC 123
Query: 135 VQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLL 193
+ + + ALA P IVIATPG + L +K F+ +LK LV+DEAD +
Sbjct: 124 AVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLE----NTKGFNLRALKYLVMDEADRI 179
Query: 194 LSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVI 253
L+ +E ++ + VIPR + L SAT + V KL++ L NP + K + +
Sbjct: 180 LNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTV 235
Query: 254 PKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAIL 313
K +QQ+++ + K Y++ +L EL +IF +T + R L L G + L
Sbjct: 236 EK-LQQYYLFIPSKFKDTYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPL 293
Query: 314 NAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSE 373
+ ++ Q+ RL L +F A L+ATD
Sbjct: 294 HGQMSQSKRLGSLNKFKAKARSILLATDVAS----------------------------- 324
Query: 374 FGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKS 433
RG+D +V V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+
Sbjct: 325 ----RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEH 380
Query: 434 FVG 436
+G
Sbjct: 381 LIG 383
>gi|426241599|ref|XP_004014677.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Ovis aries]
Length = 765
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 141/417 (33%), Positives = 201/417 (48%), Gaps = 49/417 (11%)
Query: 17 EEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGK 76
E+ ++ +E SF+++ L L+ A+ G ++PT IQ+A IP+ L GKD+ A A TG+GK
Sbjct: 178 EDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGK 237
Query: 77 TFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQ 136
T A+ LP+L RL + P+ LVLVPTREL QV+S L + C L V
Sbjct: 238 TAAFALPVLERLIYK--PRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGG 295
Query: 137 LTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLS 195
L + LRAA PDI+IATPG + L SF S+++L+LDEAD +L
Sbjct: 296 LDVKSQEAALRAA----PDILIATPGRLIDHLHN----CPSFHLSSIEVLILDEADRMLD 347
Query: 196 YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK 255
+E+ +K + + Q +L SAT + +V L + L NP + + + +V P
Sbjct: 348 EYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFV----NSNTDVAPF 403
Query: 256 NVQQFW-ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILN 314
Q+F I + I+ L + ++FT T A R+ + L G++ L+
Sbjct: 404 LRQEFIRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELH 463
Query: 315 AELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEF 374
L Q RL L F D L+ATD
Sbjct: 464 GNLSQTQRLEALRRFKDEQIDILVATD--------------------------------- 490
Query: 375 GVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 431
RG+D + V TVINF MP YVHR+GRT RA G SVSLV +E K+ +EI
Sbjct: 491 VAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEI 547
>gi|429743607|ref|ZP_19277153.1| putative ATP-dependent RNA helicase RhlE [Neisseria sp. oral taxon
020 str. F0370]
gi|429164947|gb|EKY07038.1| putative ATP-dependent RNA helicase RhlE [Neisseria sp. oral taxon
020 str. F0370]
Length = 444
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 130/413 (31%), Positives = 203/413 (49%), Gaps = 55/413 (13%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F +L LD ++ AL G + PT IQ ++P LEG+D++A A+TGSGKT A+LLP L R
Sbjct: 5 FSDLHLDKNILSALTSAGYETPTPIQAQAVPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
L S K P ALVL PTREL QV + K + V +
Sbjct: 65 LTRRSDKPGK-GPRALVLTPTRELAAQVEKNAL---NYAKNMKWFRTVSIVGGASFGYQT 120
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
AL+ P D+++ATPG + +++G K D L++L+LDEAD +L G+ DD++ + A
Sbjct: 121 RALSKPVDLIVATPGRLMDLMNSG----KVDFDRLEVLILDEADRMLDMGFIDDIETIVA 176
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEV---GDVKDEVIPKNVQQFWISC 264
P+ Q LL SAT V KL + + NP ++ + V G ++++++ +
Sbjct: 177 ATPKERQTLLFSATWDGAVGKLARKLTKNPEVIEIERVDEQGKIEEQLL------YCDDM 230
Query: 265 SERDKLL-YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+++LL +IL ++ + +IFT+T M + L + G + L+ ++PQ R
Sbjct: 231 RHKNRLLDHILRDANID----QCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRN 286
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
L + G L+ATD RGID
Sbjct: 287 RTLMDLRKGRCKILVATDV---------------------------------AARGIDVP 313
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
+ VIN+++P+ A YVHRIGRTGRA TG +++ +E +I+ ++G
Sbjct: 314 TITHVINYDLPKQAEDYVHRIGRTGRAGRTGTAITFAEVNEYVKVHKIEKYIG 366
>gi|402885238|ref|XP_003906071.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Papio anubis]
Length = 455
Score = 194 bits (492), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 138/454 (30%), Positives = 229/454 (50%), Gaps = 61/454 (13%)
Query: 14 QAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTG 73
+A + E EE K+F++LG+ L A ++ G KPT IQ +IPL L+G+D++ A+TG
Sbjct: 12 EASQPVMEEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETG 71
Query: 74 SGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLK 133
SGKT A+ LP+L+ L +P+ ALVL PTREL Q+ + AL + ++
Sbjct: 72 SGKTGAFALPILNALLE--TPQRLF---ALVLTPTRELAFQISEQFEAL----GSSIGVQ 122
Query: 134 VVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADL 192
+ + + ALA P I+IATPG + L +K F+ +LK LV+DEAD
Sbjct: 123 SAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLE----NTKGFNLRALKYLVMDEADR 178
Query: 193 LLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEV 252
+L+ +E ++ + VIPR + L SAT + V KL++ L NP + K +
Sbjct: 179 ILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQT 234
Query: 253 IPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAI 312
+ K +QQ++I + K Y++ +L EL +IF +T + R L L G +
Sbjct: 235 VEK-LQQYYIFIPSKFKDTYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIP 292
Query: 313 LNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDS 372
L+ ++ Q+ RL L +F A L+ATD
Sbjct: 293 LHGQMSQSKRLGSLNKFKAKARSILLATDVAS---------------------------- 324
Query: 373 EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432
RG+D +V V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+
Sbjct: 325 -----RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIE 379
Query: 433 SFVGDD----ENEDSNIIAPFPLLAQNAVESLRY 462
+G +D ++ +LA+ E+ R+
Sbjct: 380 HLIGKKLPVFPTQDDEVM----MLAERVAEAQRF 409
>gi|157376037|ref|YP_001474637.1| DEAD/DEAH box helicase [Shewanella sediminis HAW-EB3]
gi|157318411|gb|ABV37509.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
HAW-EB3]
Length = 432
Score = 194 bits (492), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 146/441 (33%), Positives = 227/441 (51%), Gaps = 60/441 (13%)
Query: 20 AEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFA 79
++ + +FE+LGL L+ L + PTL+Q +I +LEGKDV+A A TGSGKT A
Sbjct: 7 SQTSQNATFEQLGLIPELLARLTELEYVTPTLVQTGTIAAVLEGKDVLAGAITGSGKTAA 66
Query: 80 YLLPLLHRLFNE--SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQL 137
+ LPL+ RL ++ +S K L LVLVPTREL QQV + +L K +V+++ V
Sbjct: 67 FALPLIQRLLSKQSTSVKGNLI-GTLVLVPTRELAQQVAESFKSYAKLIKPRVKVEAV-- 123
Query: 138 TSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYG 197
+ A+ AL G D+++ATPG + +S+ ++ + LVLDEAD +LS G
Sbjct: 124 FGGVSANTQMLALRGGADVLVATPGRLLDLISSNAVKLGQVTS----LVLDEADRMLSLG 179
Query: 198 YEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNV 257
+E++L + A +P+ Q LL SAT +V L +L +P + L + E
Sbjct: 180 FEEELTEILAKLPKHKQTLLFSATFPEEVKILTDKLLSSPVEVQL------QSEEKSTLT 233
Query: 258 QQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAEL 317
QQ + + + K + L+K E ++ L+F + + RL+ LEK GI + + +++
Sbjct: 234 QQVY-TVNRNSKTALLAHLIK-ENDWRQVLVFASAKNTCNRLEQKLEKLGIAAQVFHSDK 291
Query: 318 PQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVV 377
Q +R +LE F +G LIATD
Sbjct: 292 AQGARTRVLEGFKSGEIRVLIATDIA---------------------------------A 318
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE---MKIFEEIKSF 434
RGID + + VIN+E+P++ A Y+HRIGR+GRA G ++SL+S DE KI E+ F
Sbjct: 319 RGIDIEKLPVVINYELPRSPADYMHRIGRSGRAGEAGLALSLISHDEYHHFKIIEKKNKF 378
Query: 435 -------VGDDENEDSNIIAP 448
VG + +E++ + P
Sbjct: 379 RLEREQVVGFEASEEAPLDCP 399
>gi|342877843|gb|EGU79271.1| hypothetical protein FOXB_10221 [Fusarium oxysporum Fo5176]
Length = 485
Score = 194 bits (492), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 137/436 (31%), Positives = 219/436 (50%), Gaps = 63/436 (14%)
Query: 13 KQAEEEEAEAEE-----------EKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLIL 61
+Q+EEE A EE +K+F++LG+ L A K + PT IQ+ SIP+ L
Sbjct: 36 EQSEEESATLEEPSAEEAVEDAPKKTFKDLGIVDALCEACEKLNYKYPTPIQEKSIPVAL 95
Query: 62 EGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMA 121
EG+D++ A+TGSGKT A+ LP+L L ++ P LVL PTREL Q+ A
Sbjct: 96 EGRDIIGLAETGSGKTAAFALPVLQALLDKPQPL-----FGLVLAPTRELATQIGQAFEA 150
Query: 122 LIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-D 180
L L + L+ + + AL P I++ATPG + L ++K FS
Sbjct: 151 LGSL----ISLRCAVIVGGLDMVPQAIALGKKPHIIVATPGRLVDHLE----KTKGFSLR 202
Query: 181 SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL 240
+LK L++DEAD LL + + + IPR + L SAT SS ++ L++ L +P +
Sbjct: 203 TLKYLIMDEADRLLDMDFGPSIDKILKFIPRERRTYLFSATISSKIESLQRASLRDPVRV 262
Query: 241 TLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLK 300
+ + K + + + Q +I K +Y++ L+ E V K +IFT T+ R+
Sbjct: 263 S---ISSNKYQTV-STLLQHYIFIPHVRKDVYLIYLIN-EHVGKSTIIFTRTVWETQRIS 317
Query: 301 LFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSR 360
+ L G + L+ +L Q SRL L +F +G D L+ATD
Sbjct: 318 ILLRTLGFGAIPLHGQLSQTSRLGALNKFRSGTRDILVATD------------------- 358
Query: 361 KSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLV 420
RG+D +V V+N+++PQ++ Y+HR+GRT RA +G ++S+V
Sbjct: 359 --------------VAARGLDIPSVDVVLNYDLPQDSKTYIHRVGRTARAGKSGIAISVV 404
Query: 421 SPDEMKIFEEIKSFVG 436
+ +++IF I++ +G
Sbjct: 405 TQYDVEIFTRIEAALG 420
>gi|73992237|ref|XP_534451.2| PREDICTED: probable ATP-dependent RNA helicase DDX27 isoform 1
[Canis lupus familiaris]
Length = 765
Score = 194 bits (492), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 141/417 (33%), Positives = 200/417 (47%), Gaps = 49/417 (11%)
Query: 17 EEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGK 76
E+ ++ +E SF+++ L L+ A+ G ++PT IQ+A IP+ L GKD+ A A TG+GK
Sbjct: 176 EDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGK 235
Query: 77 TFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQ 136
T A+ LP+L RL + P+ LVLVPTREL QV+S L + C L V
Sbjct: 236 TAAFALPVLERLIYK--PRQSPVTRVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGG 293
Query: 137 LTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLS 195
L + LRAA PDI+IATPG + L SF S+++L+LDEAD +L
Sbjct: 294 LDVKSQEAALRAA----PDILIATPGRLIDHLHN----CPSFHLSSIEVLILDEADRMLD 345
Query: 196 YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK 255
+E+ +K + + Q +L SAT + +V L + L NP + + + +V P
Sbjct: 346 EYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFV----NSNTDVAPF 401
Query: 256 NVQQF-WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILN 314
Q+F I + I+ L ++FT T A R+ + L G++ L+
Sbjct: 402 LRQEFVRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELH 461
Query: 315 AELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEF 374
L Q RL L F D L+ATD
Sbjct: 462 GNLSQTQRLEALRRFKDEQIDILVATD--------------------------------- 488
Query: 375 GVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 431
RG+D + V TVINF MP YVHR+GRT RA G SVSLV +E K+ +EI
Sbjct: 489 VAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEI 545
>gi|385333348|ref|YP_005887299.1| DEAD/DEAH box helicase [Marinobacter adhaerens HP15]
gi|311696498|gb|ADP99371.1| DEAD/DEAH box helicase domain protein [Marinobacter adhaerens HP15]
Length = 440
Score = 194 bits (492), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 140/415 (33%), Positives = 207/415 (49%), Gaps = 61/415 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF LGL +LV A + +G + P+ IQ +IP +L G+DV+A A+TG+GKT + LPLL
Sbjct: 2 SFSSLGLSEQLVRATSDQGYETPSPIQAQAIPAVLSGRDVMAAAQTGTGKTAGFTLPLLQ 61
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIEL--CKGQVQLKVVQLTSSMPAS 144
RL +P++ P AL+L PTREL QV+ V + K V V++ M
Sbjct: 62 RL--GENPRTGKGPRALILTPTRELAAQVHDSVNLYSKYIPTKAAVVFGGVKINPQM--M 117
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
LR L D+++ATPG + Q+ + ++ILVLDEAD +L G+ D++
Sbjct: 118 KLRKGL----DVLVATPGRLMDLYQ----QNAVRFNEVEILVLDEADRMLDMGFIRDIRK 169
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264
+ +++P Q LL SAT S+++ L + +L NP V+ EV +N I
Sbjct: 170 ILSLLPAKRQNLLFSATFSNEIRTLAEGLLDNP----------VQVEVAARNTSAENIKQ 219
Query: 265 S----ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 320
S ++ + +L+ L + + L+FT T A RL LEK GI +A ++ Q
Sbjct: 220 SVYPVDQSQKTALLSKLVRDNSWDQVLVFTRTKHGANRLTQKLEKDGITAAAIHGNKSQG 279
Query: 321 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 380
+R L +F AG L+ATD RG+
Sbjct: 280 ARTRALADFKAGEVRVLVATDI---------------------------------AARGL 306
Query: 381 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
D K + V+NFE+P YVHRIGRTGRA +G ++SLVS DE K+ I+ +
Sbjct: 307 DIKQLPQVVNFELPNVPEDYVHRIGRTGRAGESGHALSLVSADEGKMLAGIERLI 361
>gi|254228728|ref|ZP_04922151.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
gi|262396550|ref|YP_003288403.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
gi|151938675|gb|EDN57510.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
gi|262340144|gb|ACY53938.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
Length = 443
Score = 194 bits (492), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 133/413 (32%), Positives = 210/413 (50%), Gaps = 49/413 (11%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F++LGLD RL+ L +KPT IQ+ +IP+ + GKD++A +KTGSGKT A++LP+LH+
Sbjct: 3 FKDLGLDNRLLKNLKHYDFKKPTDIQKQAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHK 62
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
S +K P A++L PTREL +QVY E+ +++ + L + +D
Sbjct: 63 SLKTKSFSAK-DPRAVILAPTRELAKQVYGELRSMLAGLSYEAAL----ILGGENFNDQV 117
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS- 206
AL P ++ATPG + L L + + L+ L+LDEAD +L G+ +L+ +
Sbjct: 118 KALRRYPKFIVATPGRLADHLEHRSL----YLEGLETLILDEADRMLDLGFAPELRRIHK 173
Query: 207 AVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
A R Q L+ SAT +DV+ + +L++P + + V +E Q+F++ C
Sbjct: 174 AAKHRRRQTLMFSATLDHADVNDIAAEMLNSPKRIAI----GVSNEEHKDITQKFYL-CD 228
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
D IL + E ++ +IFT T D RL L + +K+ L+ L Q R I
Sbjct: 229 HLDHKEAILDRVLSEAEYRQVIIFTATRDDTERLTAKLNEKKLKAVALSGNLNQTQRNTI 288
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
+ +F +F L+ TD RG+D V
Sbjct: 289 MSQFERAVFKILVTTDVAS---------------------------------RGLDIATV 315
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD 438
VINF+MP++ YVHR+GRTGRA N G ++SLV P + F+ +++++ D
Sbjct: 316 THVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLVGPKDWDSFKRVEAYLQQD 368
>gi|429886352|ref|ZP_19367911.1| ATP-dependent RNA helicase [Vibrio cholerae PS15]
gi|429226681|gb|EKY32761.1| ATP-dependent RNA helicase [Vibrio cholerae PS15]
Length = 448
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 133/410 (32%), Positives = 210/410 (51%), Gaps = 49/410 (11%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F++LGLD RL+ L ++ T IQQ +IPL + G+D++A +KTGSGKT A++LP+LH+
Sbjct: 3 FKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHK 62
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+ +K P L+LVPTREL +QVY E+ +++ G + +T +D
Sbjct: 63 SLKTKAFSAK-DPRGLILVPTRELAKQVYGELRSML----GGLSYTATLITGGENFNDQV 117
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL-S 206
ALA P ++ATPG + L L F + L+ LVLDEAD +L G+ +L+ + +
Sbjct: 118 KALARGPRFIVATPGRLADHLDHRSL----FLEGLETLVLDEADRMLDLGFAKELRRIHN 173
Query: 207 AVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
A R Q L+ SAT +DV+ + +L+ P + +G +E K++ Q + C
Sbjct: 174 AAKHRRRQTLMFSATLDHADVNDMAMELLNEPKRIA---IGVGSEE--HKDITQHFYLCD 228
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
D +L + + ++ +IFT T RL L + +K+ L+ L Q R I
Sbjct: 229 HLDHKEALLDRILADAEYRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTI 288
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
+ +F +F L+ TD RG+D V
Sbjct: 289 MGQFERAVFKILVTTDVAS---------------------------------RGLDIPTV 315
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
VINF+MP++ YVHR+GRTGRA N G ++SLV P + + F+ +++F+
Sbjct: 316 THVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKRVEAFL 365
>gi|302499800|ref|XP_003011895.1| hypothetical protein ARB_01875 [Arthroderma benhamiae CBS 112371]
gi|291175449|gb|EFE31255.1| hypothetical protein ARB_01875 [Arthroderma benhamiae CBS 112371]
Length = 814
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 137/426 (32%), Positives = 209/426 (49%), Gaps = 54/426 (12%)
Query: 13 KQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKT 72
+Q E ++ + SF+ L L ++ L G PT IQ+ +IP+ L GKDVV A T
Sbjct: 284 EQVTESKSTSGAPASFQNLSLSRPILRGLASVGFSTPTPIQRKTIPVALLGKDVVGGAVT 343
Query: 73 GSGKTFAYLLPLLHRLFNESS--PKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQV 130
GSGKT A+++P+L RL P S++A +L+PTREL Q Y+ L
Sbjct: 344 GSGKTGAFIVPILERLLYRPRKVPTSRVA----ILMPTRELAVQCYNVATKLATFT---- 395
Query: 131 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDE 189
+ QL + L PD++IATPG + S SF+ D+L+ILVLDE
Sbjct: 396 DITFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRN----SASFTVDTLEILVLDE 451
Query: 190 ADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVK 249
AD +L G+ ++L + IP+ Q +L SAT ++ VDKL ++ L+ P L + D K
Sbjct: 452 ADRMLEDGFAEELNEILTTIPKSRQTMLFSATMTNSVDKLIRVGLNKPVRLMV----DSK 507
Query: 250 DEVIPKNVQQF-WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGI 308
+ + VQ+F + DK L L L + + ++F A R+++ G+
Sbjct: 508 KQTVGTLVQEFVRLRPGREDKRLGYLMFLCKTVYTNRVIVFFRQKKEAHRVRIIFGLMGL 567
Query: 309 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA 368
K+A L+ + Q R+ +E+F YL+ATD
Sbjct: 568 KAAELHGSMSQEQRIKSVEDFRDAKVSYLLATD--------------------------- 600
Query: 369 KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS-PDEMKI 427
L S RG+D K V TVIN+E PQ+ Y+HR+GRT RA +G + ++ + PD +
Sbjct: 601 -LAS-----RGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVV 654
Query: 428 FEEIKS 433
E +K+
Sbjct: 655 KEAVKA 660
>gi|348511400|ref|XP_003443232.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like
[Oreochromis niloticus]
Length = 479
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 133/415 (32%), Positives = 212/415 (51%), Gaps = 53/415 (12%)
Query: 23 EEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLL 82
E KSF++LG+ L A ++ G + PT IQ +IP+ L+GKDV+ A+TGSGKT A+ L
Sbjct: 34 ETVKSFKDLGVTEVLCEACDQLGWKSPTKIQIEAIPVALQGKDVIGLAETGSGKTGAFAL 93
Query: 83 PLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMP 142
P+L L +SP+ LVL PTREL Q+ + AL + +K + +
Sbjct: 94 PILQSLL--ASPQRL---HTLVLTPTRELAFQISEQFEAL----GSSIGVKCAVIVGGID 144
Query: 143 ASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDD 201
LA P +VIATPG + L +K FS +LK LV+DEAD +L+ +E +
Sbjct: 145 MMSQSLVLAKKPHVVIATPGRLIDHLE----NTKGFSLRALKFLVMDEADRILNMDFETE 200
Query: 202 LKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW 261
+ + VIPR + L SAT + V KL++ L +P + D+ +QQ++
Sbjct: 201 VDKILKVIPRERRTFLFSATMTKKVQKLERAALKDPVKCAVSTKYSTVDK-----LQQYY 255
Query: 262 ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 321
I + K Y++++L EL +IF +T + A R+ L L GI + L+ ++ QN
Sbjct: 256 IFIPSKYKDCYLVSILN-ELAGNSFIIFCSTCNTAQRVALLLRNLGITAIPLHGQMSQNK 314
Query: 322 RLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGID 381
RL L +F + L+ATD RG+D
Sbjct: 315 RLGALNKFKSKSRSVLLATDVAS---------------------------------RGLD 341
Query: 382 FKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
+V VIN+++P ++ Y+HR+GRT RA +G S++ V+ ++++F+ I++ +G
Sbjct: 342 IPHVDCVINYDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRIETLIG 396
>gi|73540602|ref|YP_295122.1| helicase [Ralstonia eutropha JMP134]
gi|72118015|gb|AAZ60278.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Ralstonia
eutropha JMP134]
Length = 537
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 133/420 (31%), Positives = 212/420 (50%), Gaps = 58/420 (13%)
Query: 25 EKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPL 84
E++FE GLD R++ AL+++G KPT IQ +IP++L GKDV+ A+TG+GKT + LP+
Sbjct: 53 EQTFESFGLDARILRALSEQGYTKPTPIQAQAIPVVLLGKDVMGAAQTGTGKTAGFALPI 112
Query: 85 LHRLFNESSPKSKLAPA-----ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTS 139
+ RL +S + +PA AL+L PTREL QVY V + L+ +
Sbjct: 113 IQRLLPMAS--ASASPARHPVRALMLTPTRELADQVYDNVARYAK----HTDLRSTVVFG 166
Query: 140 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS-LKILVLDEADLLLSYGY 198
+ + AL +I++ATPG + +Q KS + S +++LVLDEAD +L G+
Sbjct: 167 GVDMNPQTDALRRGVEILVATPGRL-----LDHVQQKSVNLSQVQMLVLDEADRMLDMGF 221
Query: 199 EDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ 258
DL+ + ++P Q LL SAT S ++ +L L P + + + +NV+
Sbjct: 222 LPDLQRIINLLPAQRQTLLFSATFSPEIKRLAASYLKQPVTIEV-----ARSNSTNENVR 276
Query: 259 QFWISCSERDKLLYILTLLKLELVQ---KKALIFTNTIDMAFRLKLFLEKFGIKSAILNA 315
Q + K ++ LL+ Q K+ ++F N+ RL LE+ GI +A ++
Sbjct: 277 QMVYQVEDGQKQAAVVHLLRQRAEQGLSKQCIVFVNSKIGCSRLARHLEREGINAAAIHG 336
Query: 316 ELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFG 375
+ Q R+ LE F G D L+ATD
Sbjct: 337 DKTQTERMQTLEGFKNGTIDALVATDV--------------------------------- 363
Query: 376 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
RG+D ++ VINF++P +A YVHRIGRTGRA +G ++S+ P + ++ +I+ +
Sbjct: 364 AARGLDIADMPCVINFDLPFSAEDYVHRIGRTGRAGASGDALSIFVPGDERLLTDIEKLI 423
>gi|28901323|ref|NP_800978.1| DEAD-box ATP dependent DNA helicase [Vibrio parahaemolyticus RIMD
2210633]
gi|417323065|ref|ZP_12109595.1| DEAD-box ATP dependent DNA helicase [Vibrio parahaemolyticus 10329]
gi|28809870|dbj|BAC62811.1| ATP-dependent RNA helicase, DEAD box family [Vibrio
parahaemolyticus RIMD 2210633]
gi|328469261|gb|EGF40207.1| DEAD-box ATP dependent DNA helicase [Vibrio parahaemolyticus 10329]
Length = 448
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 135/418 (32%), Positives = 210/418 (50%), Gaps = 49/418 (11%)
Query: 23 EEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLL 82
E F++LGLD RL+ L +KPT IQ+ +IP+ + GKD++A +KTGSGKT A++L
Sbjct: 2 ENTLQFKDLGLDNRLLKNLKHYDFKKPTDIQKQAIPVAIAGKDLLASSKTGSGKTLAFVL 61
Query: 83 PLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMP 142
P+LH+ S +K P A++L PTREL +QVY E+ +++ + +
Sbjct: 62 PMLHKSLKTKSFSAK-DPRAVILAPTRELAKQVYGELRSML----AGLSYDAALILGGEN 116
Query: 143 ASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 202
+D AL P ++ATPG + L L + D L+ L+LDEAD +L G+ +L
Sbjct: 117 FNDQVKALRRYPKFIVATPGRLADHLEHRSL----YLDGLETLILDEADRMLDLGFAPEL 172
Query: 203 KAL-SAVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF 260
+ + +A R Q L+ SAT ++V+ + +L+ P + VG +E K++ Q
Sbjct: 173 RRIHNAAKHRRRQTLMFSATLDHAEVNDIASEMLNAPKRIA---VGVSNEE--HKDITQK 227
Query: 261 WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 320
+ C D IL + E ++ +IFT T D RL L + +K+ L+ L Q
Sbjct: 228 FYLCDHLDHKEAILERVLSEAEYRQVIIFTATRDDTERLTAKLNEKKLKAVALSGNLNQT 287
Query: 321 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 380
R I+ +F +F L+ TD RG+
Sbjct: 288 QRNTIMSQFERAVFKILVTTDVAS---------------------------------RGL 314
Query: 381 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD 438
D V VINF+MP++ YVHR+GRTGRA N G ++SLV P + F+ I++++ D
Sbjct: 315 DIATVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLVGPKDWDSFKRIETYLQQD 372
>gi|409200013|ref|ZP_11228216.1| DEAD/DEAH box helicase [Pseudoalteromonas flavipulchra JG1]
Length = 443
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 146/451 (32%), Positives = 218/451 (48%), Gaps = 61/451 (13%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F ELG+D RL L +GI +PT IQ +IP L G DV A++KTGSGKT A+LLP + R
Sbjct: 3 FTELGIDTRLEQQLAHQGITEPTEIQAHAIPTALAGHDVFAQSKTGSGKTLAFLLPAVQR 62
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+ + + SK P +++ PTREL QV+SE A LC G L+V ++ +D
Sbjct: 63 VMKQKA-LSKRDPRVVIVAPTRELATQVFSECRA---LCAG-TNLQVCKILGGENYNDQV 117
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS- 206
AL P V+ TPG + + L F L++L+ DEAD + G+E L ++
Sbjct: 118 KALRRDPHFVVGTPGRIADHVENRSL----FLGGLELLIFDEADRMFDLGFEKQLDVIND 173
Query: 207 AVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
+ R Q LL SAT + V+ + +L +P + L +++ Q + +
Sbjct: 174 SADHRQRQTLLFSATLDHTQVEASSRQLLKSPKRIMLSNAHQQHEDI----KQALYFA-- 227
Query: 266 ERDKLLYILTLLKLELVQK---KALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 322
D L + LLK + Q + +IFT T RL L + IK+ L+ ++PQN R
Sbjct: 228 --DHLDHKEALLKHFITQDDVGQCIIFTATRGDTDRLSKLLNEMSIKAVSLSGDMPQNKR 285
Query: 323 LHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDF 382
L I+E F+ G++ L+ TD RG+D
Sbjct: 286 LDIMESFSRGIYKVLVTTDVAS---------------------------------RGLDL 312
Query: 383 KNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDE--- 439
+V V+NF++P+ A YVHRIGRTGRA G ++S V P + + IK+++ DE
Sbjct: 313 LSVTHVMNFDLPKQAEEYVHRIGRTGRAGFKGTAISFVGPKDWDSYVAIKNYL--DEPLR 370
Query: 440 -NEDSNIIAPFPLLAQNAVESLRYRAEDVAK 469
E ++ F L Q +S AE +K
Sbjct: 371 FEEVPGLVGKFKGLKQKPQQSKNRPAESASK 401
>gi|302654026|ref|XP_003018826.1| hypothetical protein TRV_07145 [Trichophyton verrucosum HKI 0517]
gi|291182505|gb|EFE38181.1| hypothetical protein TRV_07145 [Trichophyton verrucosum HKI 0517]
Length = 814
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 135/412 (32%), Positives = 203/412 (49%), Gaps = 54/412 (13%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF+ L L ++ L G PT IQ+ +IP+ L GKDVV A TGSGKT A+++P+L
Sbjct: 298 SFQNLSLSRPILRGLASVGFSTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIVPILE 357
Query: 87 RLFNESS--PKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
RL P S++A +L+PTREL Q Y+ L + QL
Sbjct: 358 RLLYRPRKVPTSRVA----ILMPTRELAVQCYNVATKLATFT----DITFCQLVGGFSLR 409
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLK 203
+ L PD++IATPG + S SF+ D+L+ILVLDEAD +L G+ ++L
Sbjct: 410 EQENILKKRPDVIIATPGRFIDHMRN----SASFTVDTLEILVLDEADRMLEDGFAEELN 465
Query: 204 ALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-WI 262
+ IP+ Q +L SAT ++ VDKL ++ L+ P L + D K + + VQ+F +
Sbjct: 466 EILTTIPKSRQTMLFSATMTNSVDKLIRVGLNKPVRLMV----DSKKQTVGTLVQEFVRL 521
Query: 263 SCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 322
DK L L L + + ++F A R+++ G+K+A L+ + Q R
Sbjct: 522 RPGREDKRLGYLMFLCKTVYTNRVIVFFRQKKEAHRVRIVFGLMGLKAAELHGSMSQEQR 581
Query: 323 LHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDF 382
+ +E+F YL+ATD L S RG+D
Sbjct: 582 IKSVEDFRDAKVSYLLATD----------------------------LAS-----RGLDI 608
Query: 383 KNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS-PDEMKIFEEIKS 433
K V TVIN+E PQ+ Y+HR+GRT RA +G + ++ + PD + E +K+
Sbjct: 609 KGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKEAVKA 660
>gi|355564029|gb|EHH20529.1| Putative ATP-dependent RNA helicase DDX47 [Macaca mulatta]
gi|355785916|gb|EHH66099.1| Putative ATP-dependent RNA helicase DDX47 [Macaca fascicularis]
gi|380786753|gb|AFE65252.1| putative ATP-dependent RNA helicase DDX47 isoform 1 [Macaca
mulatta]
gi|383418889|gb|AFH32658.1| putative ATP-dependent RNA helicase DDX47 isoform 1 [Macaca
mulatta]
Length = 455
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 138/454 (30%), Positives = 229/454 (50%), Gaps = 61/454 (13%)
Query: 14 QAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTG 73
+A + E EE K+F++LG+ L A ++ G KPT IQ +IPL L+G+D++ A+TG
Sbjct: 12 EASQPVMEEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETG 71
Query: 74 SGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLK 133
SGKT A+ LP+L+ L +P+ ALVL PTREL Q+ + AL + ++
Sbjct: 72 SGKTGAFALPILNALLE--TPQRLF---ALVLTPTRELAFQISEQFEAL----GSSIGVQ 122
Query: 134 VVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADL 192
+ + + ALA P I+IATPG + L +K F+ +LK LV+DEAD
Sbjct: 123 SAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLE----NTKGFNLRALKYLVMDEADR 178
Query: 193 LLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEV 252
+L+ +E ++ + VIPR + L SAT + V KL++ L NP + K +
Sbjct: 179 ILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQT 234
Query: 253 IPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAI 312
+ K +QQ++I + K Y++ +L EL +IF +T + R L L G +
Sbjct: 235 VEK-LQQYYIFIPSKFKDTYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIP 292
Query: 313 LNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDS 372
L+ ++ Q+ RL L +F A L+ATD
Sbjct: 293 LHGQMSQSKRLGSLNKFKAKARSILLATDVAS---------------------------- 324
Query: 373 EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432
RG+D +V V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+
Sbjct: 325 -----RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIE 379
Query: 433 SFVGDD----ENEDSNIIAPFPLLAQNAVESLRY 462
+G +D ++ +LA+ E+ R+
Sbjct: 380 HLIGKKLPVFPTQDDEVM----MLAERVAEAQRF 409
>gi|238501386|ref|XP_002381927.1| ATP-dependent RNA helicase , putative [Aspergillus flavus NRRL3357]
gi|220692164|gb|EED48511.1| ATP-dependent RNA helicase , putative [Aspergillus flavus NRRL3357]
gi|391863856|gb|EIT73155.1| ATP-dependent RNA helicase [Aspergillus oryzae 3.042]
Length = 472
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 139/430 (32%), Positives = 212/430 (49%), Gaps = 52/430 (12%)
Query: 8 PSKEVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVV 67
P+ ++ E EA + KSF+ELGL +L A + G + PT IQ +IPL L+G+D++
Sbjct: 34 PNTTEQEQEPSEAPKQAPKSFKELGLIEQLCEACDSMGYKAPTAIQAEAIPLALQGRDLI 93
Query: 68 ARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCK 127
A+TGSGKT A+ LP+L L ++ P S LVL PTREL Q+ L
Sbjct: 94 GLAETGSGKTAAFALPILQALMDK--PSSFF---GLVLAPTRELAYQISQAFEGL----G 144
Query: 128 GQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILV 186
+ ++ L M AL P I++ATPG + L +K FS +LK LV
Sbjct: 145 STISVRSTVLVGGMDMVSQSIALGKKPHIIVATPGRLLDHLEN----TKGFSLRNLKYLV 200
Query: 187 LDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVG 246
+DEAD LL + L + V+PR + L SAT SS V+ L++ L NP + V
Sbjct: 201 MDEADRLLDMDFGPILDKILKVLPRERRTYLFSATMSSKVESLQRASLQNPLRVA---VS 257
Query: 247 DVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKF 306
K + + +QQ +I + K LY++ LL E V + +IF T+ RL FL
Sbjct: 258 SSKFQTV-STLQQSYIFIPHKHKDLYLVYLLN-EFVGQSCIIFCRTVHETQRLSFFLRLL 315
Query: 307 GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHP 366
G + L+ +L Q++RL L +F + D L+ATD
Sbjct: 316 GFGAIPLHGQLSQSARLGALGKFRSRSRDILVATDVA----------------------- 352
Query: 367 KAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMK 426
RG+D +V V+NF++P ++ ++HRIGRT RA +G ++S + +++
Sbjct: 353 ----------ARGLDIPSVDVVLNFDLPGDSKTFIHRIGRTARAGKSGVAISFATQYDVE 402
Query: 427 IFEEIKSFVG 436
+ I+ +G
Sbjct: 403 AWLRIEGALG 412
>gi|254372784|ref|ZP_04988273.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
novicida GA99-3549]
gi|151570511|gb|EDN36165.1| ATP-dependent RNA helicase RhlE [Francisella novicida GA99-3549]
Length = 442
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 130/410 (31%), Positives = 210/410 (51%), Gaps = 50/410 (12%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F +LGL+ + AL KKG KPT IQ +IP++L+G DV+A A+TG+GKT + LP++ R
Sbjct: 3 FSDLGLNSLICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQR 62
Query: 88 LFNESSPKSKLAPA-ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
L ++ PK++ L+L PTREL Q+ + I++ ++ + + +
Sbjct: 63 LLDQ--PKAQANRIKTLILTPTRELAAQIQEQ----IQIYAANTHIRSAVIFGGVSINPQ 116
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
L +I+IATPG + S QS DSL VLDEAD +L G+ +DLK +
Sbjct: 117 MMKLRKGVEILIATPGRLLDLYS----QSAVKFDSLNTFVLDEADRMLDMGFINDLKKIH 172
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
++P+ Q L+ SAT SS++ L L+NP ++ DV + + K Q+ + + +
Sbjct: 173 KLLPKKLQTLMFSATFSSEIKNLANEFLNNPQFVS----ADVVNTTVKKITQKIY-TLDK 227
Query: 267 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
+K+ +++L+K + + + L+F+ T + A ++ L GI S+ ++ Q +R L
Sbjct: 228 SNKINALISLIKDQNLH-QVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKAL 286
Query: 327 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 386
+F + + L+ATD RGID +
Sbjct: 287 ADFKSNDINVLVATDIA---------------------------------ARGIDIAQLP 313
Query: 387 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
VIN ++P A YVHRIGRTGRA G ++SLVS DE++ I+ +G
Sbjct: 314 CVINLDLPNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSNIEHLIG 363
>gi|83720702|ref|YP_441535.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
gi|83654527|gb|ABC38590.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
Length = 571
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 132/416 (31%), Positives = 212/416 (50%), Gaps = 54/416 (12%)
Query: 25 EKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPL 84
+ +F++ GL ++ A+ ++G PT IQ +IP++L G+DV+ A+TG+GKT ++ LP+
Sbjct: 100 DATFDQFGLAAEILRAIAEQGYTTPTPIQANAIPVVLSGRDVMGAAQTGTGKTASFSLPI 159
Query: 85 LHRLF---NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELC--KGQVQLKVVQLTS 139
+ RL N S+ ++ AL+L PTREL QV + V A + + V V +
Sbjct: 160 IQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNP 219
Query: 140 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE 199
M ++LR + +I+IATPG L V Q + ++ILVLDEAD +L G+
Sbjct: 220 QM--AELRRGV----EILIATPG----RLLDHVQQKTANLGQVQILVLDEADRMLDMGFL 269
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
DL+ + ++P+ Q LL SAT S ++ KL L NP + + + V Q
Sbjct: 270 PDLQRILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEV-----ARSNAAASTVTQ 324
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+E DK ++ L++ + K+ ++F N+ A RL +E+ GI +A ++ + Q
Sbjct: 325 IVYDVAEGDKQAAVVKLIR-DRSLKQVIVFCNSKIGASRLARQIERDGIVAAAIHGDRSQ 383
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
+ R+ L+ F G + L+ATD RG
Sbjct: 384 SERMQALDAFKRGEIEALVATDV---------------------------------AARG 410
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+D + VINF++P NA YVHRIGRTGRA +G ++SL SP+E K +I+ +
Sbjct: 411 LDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLADIEKLI 466
>gi|395538707|ref|XP_003771316.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Sarcophilus harrisii]
Length = 460
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 130/423 (30%), Positives = 219/423 (51%), Gaps = 53/423 (12%)
Query: 15 AEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGS 74
+E +EAE +E K+F++LG+ L A ++ G + PT IQ +IP+ LEG+D++ A+TGS
Sbjct: 14 SEPKEAEVQETKTFKDLGVTEVLCDACDQLGWKTPTKIQIEAIPMALEGRDIIGLAETGS 73
Query: 75 GKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKV 134
GKT A+ LP+L+ L +P+ ALVL PTREL Q+ + AL + ++
Sbjct: 74 GKTGAFALPILNALLE--TPQRFF---ALVLTPTRELAFQISEQFEAL----GSSIGVEC 124
Query: 135 VQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLL 193
+ + + ALA P ++IATPG + L +K F+ +LK LV+DEAD +
Sbjct: 125 AVIVGGIDSMSQSLALAKKPHVIIATPGRLIDHLE----NTKGFNLRALKYLVMDEADRI 180
Query: 194 LSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVI 253
L+ +E ++ + +IPR + L SAT + V KL++ L NP + K + +
Sbjct: 181 LNMDFETEVDKILKLIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTV 236
Query: 254 PKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAIL 313
K +QQ+++ + K Y++ +L EL ++F +T + R L L G + L
Sbjct: 237 EK-LQQYYLFIPSKFKDSYLVYILN-ELAGNSFMVFCSTCNNTQRTALLLRNLGFTAIPL 294
Query: 314 NAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSE 373
+ ++ QN RL L +F A L+ATD
Sbjct: 295 HGQMSQNKRLGSLNKFKAKARSILLATDVAS----------------------------- 325
Query: 374 FGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKS 433
RG+D +V V+NF++P ++ Y+HR+GRT RA +G S++ V+ ++++++ I+
Sbjct: 326 ----RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELYQRIEH 381
Query: 434 FVG 436
+G
Sbjct: 382 LIG 384
>gi|161524137|ref|YP_001579149.1| DEAD/DEAH box helicase [Burkholderia multivorans ATCC 17616]
gi|160341566|gb|ABX14652.1| DEAD/DEAH box helicase domain protein [Burkholderia multivorans
ATCC 17616]
Length = 509
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 134/416 (32%), Positives = 212/416 (50%), Gaps = 54/416 (12%)
Query: 25 EKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPL 84
+ +F++ GL ++ A+ ++G PT IQ +IP++L G+DV+ A+TG+GKT ++ LP+
Sbjct: 32 DATFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPI 91
Query: 85 LHRLF---NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELC--KGQVQLKVVQLTS 139
+ RL N S+ ++ AL+L PTREL QV + V A + + V V +
Sbjct: 92 IQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNP 151
Query: 140 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE 199
M ++LR + +I+IATPG L V Q + ++ILVLDEAD +L G+
Sbjct: 152 QM--AELRRGV----EILIATPG----RLLDHVQQKTANLGQVQILVLDEADRMLDMGFL 201
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
DL+ + ++P+ Q LL SAT S ++ KL L NP + + + NV Q
Sbjct: 202 PDLQRILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEV-----ARSNSTNANVTQ 256
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+E DK ++ LL+ + K+ ++F N+ A RL LE+ G+ ++ ++ + Q
Sbjct: 257 IVYDVAEGDKQAAVVQLLR-DRGLKQVIVFCNSKIGASRLARQLERDGVVASAIHGDKSQ 315
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
R+ L+ F G + L+ATD RG
Sbjct: 316 LERMQALDAFKRGEIEALVATDV---------------------------------AARG 342
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+D + VINF++P NA YVHRIGRTGRA TG ++SL SP+E K +I+ +
Sbjct: 343 LDIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQLADIEKLI 398
>gi|152995724|ref|YP_001340559.1| DEAD/DEAH box helicase [Marinomonas sp. MWYL1]
gi|150836648|gb|ABR70624.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1]
Length = 448
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 130/410 (31%), Positives = 205/410 (50%), Gaps = 49/410 (11%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
FEE G D R++ ++ G + T IQ +IP + G+D++A +KTGSGKT AYLLP LHR
Sbjct: 3 FEEFGFDNRILKSIGHLGFDEATEIQARAIPEAMAGRDLLASSKTGSGKTLAYLLPALHR 62
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
++ + + SK P ++LVPTREL +QV+ ++ L+ + + + +D
Sbjct: 63 VYKKKA-LSKRDPRVVILVPTRELAKQVFGQLRLLLAASR----FTSILIQGGENFNDQH 117
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL-S 206
+L P ++ATPG + L Q F + L++LVLDEAD +L G+ D ++A+ S
Sbjct: 118 KSLQKDPHFIVATPGRLVDHLK----QRHVFLEGLELLVLDEADRMLDLGFADAMRAINS 173
Query: 207 AVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
A R Q L SAT ++++ ++ +L P + +G DE ++ Q + C
Sbjct: 174 AASHRQRQTLFFSATLDNTEISEIAGELLREPSRVA---IGQGFDE--HTDISQHVLLCD 228
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
D +L L + K+A++FT T RL + +G+ + LN L Q++R
Sbjct: 229 HLDHKEALLKHLLVGQTIKQAIVFTATKSDTVRLSEIIAGWGLSTQALNGNLSQSARNKT 288
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
+E F G FD L++TD RG+D +V
Sbjct: 289 MESFAKGQFDVLVSTDVAS---------------------------------RGLDIASV 315
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
V NF++P+ A +VHR GRTGRA G + SLV P + F+ I+ F+
Sbjct: 316 SHVFNFDLPKQAEEFVHRTGRTGRAGFKGDAYSLVGPKDWVNFKAIEVFL 365
>gi|440902879|gb|ELR53614.1| Putative ATP-dependent RNA helicase DDX27, partial [Bos grunniens
mutus]
Length = 741
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 141/417 (33%), Positives = 201/417 (48%), Gaps = 49/417 (11%)
Query: 17 EEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGK 76
E+ ++ +E SF+++ L L+ A+ G ++PT IQ+A IP+ L GKD+ A A TG+GK
Sbjct: 148 EDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGK 207
Query: 77 TFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQ 136
T A+ LP+L RL + P+ LVLVPTREL QV+S L + C L V
Sbjct: 208 TAAFALPVLERLIYK--PRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGG 265
Query: 137 LTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLS 195
L + LRAA PDI+IATPG + L SF S+++L+LDEAD +L
Sbjct: 266 LDVKSQEAALRAA----PDILIATPGRLIDHLHN----CPSFHLSSIEVLILDEADRMLD 317
Query: 196 YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK 255
+E+ +K + + Q +L SAT + +V L + L NP + + + +V P
Sbjct: 318 EYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFV----NSNTDVAPF 373
Query: 256 NVQQFW-ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILN 314
Q+F I + I+ L + ++FT T A R+ + L G++ L+
Sbjct: 374 LRQEFIRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELH 433
Query: 315 AELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEF 374
L Q RL L F D L+ATD
Sbjct: 434 GNLSQTQRLEALRRFKDEQIDILVATD--------------------------------- 460
Query: 375 GVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 431
RG+D + V TVINF MP YVHR+GRT RA G SVSLV +E K+ +EI
Sbjct: 461 VAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEI 517
>gi|117621455|ref|YP_855288.1| ATP-dependent RNA helicase RhlE [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117562862|gb|ABK39810.1| putative ATP-dependent RNA helicase RhlE [Aeromonas hydrophila
subsp. hydrophila ATCC 7966]
Length = 416
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 142/414 (34%), Positives = 206/414 (49%), Gaps = 57/414 (13%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF +L L RL L + G PT +Q ++IP+IL G+D++A A+TG+GKT A++LPLL
Sbjct: 5 SFADLALSPRLQQTLTELGYAAPTPVQASAIPVILAGRDLMAGAQTGTGKTAAFVLPLLE 64
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
+L + + ALVLVPTREL QV+ V KG + A+ +
Sbjct: 65 QLLQNPTNDAPRPIRALVLVPTRELAIQVHESV---TRYAKGTDLTSTLVYGGVSIAAQV 121
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
A AG DI+IATPG + L G L +L LV DEAD +L G+ D++K L
Sbjct: 122 EALKAG-VDILIATPGRLLDHLRQGALSLA----ALHHLVFDEADRMLDMGFMDEIKELL 176
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQFW 261
IP Q LL SAT ++ L K++LH+P ++ EV P+N V+Q
Sbjct: 177 KQIPADRQTLLFSATCDDNLFALSKVLLHDPELI----------EVAPRNTTAAEVEQRV 226
Query: 262 ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 321
+ KL + +L ++ ALIF+ T A +L L K GI + + +L Q +
Sbjct: 227 YTVDGDRKLALVEHMLNVK-GWAPALIFSRTRQGADKLAQQLGKAGINALAFHGDLSQGA 285
Query: 322 RLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGID 381
R +L EF AG L+ATD RG+D
Sbjct: 286 REKVLLEFRAGTLQALVATDVA---------------------------------ARGLD 312
Query: 382 FKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+++ VIN E P A YVHRIGRTGRA N G +++L SP++ + E++++ +
Sbjct: 313 ISDLNYVINMEFPFVAEDYVHRIGRTGRAGNKGLAITLFSPEDAPLLEKVEAVL 366
>gi|419828228|ref|ZP_14351719.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-1A2]
gi|419833150|ref|ZP_14356611.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-61A2]
gi|422918668|ref|ZP_16952969.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-02A1]
gi|423779918|ref|ZP_17714002.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-55C2]
gi|423839648|ref|ZP_17717751.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-59A1]
gi|423867631|ref|ZP_17721425.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-60A1]
gi|423999229|ref|ZP_17742422.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-02C1]
gi|424011245|ref|ZP_17754113.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-55B2]
gi|424021072|ref|ZP_17760842.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-59B1]
gi|424626286|ref|ZP_18064736.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-50A1]
gi|424627181|ref|ZP_18065545.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-51A1]
gi|424630976|ref|ZP_18069199.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-52A1]
gi|424637893|ref|ZP_18075890.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-55A1]
gi|424641794|ref|ZP_18079666.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-56A1]
gi|424646310|ref|ZP_18084038.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-57A1]
gi|443525109|ref|ZP_21091305.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-78A1]
gi|341634318|gb|EGS59078.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-02A1]
gi|408010063|gb|EKG47940.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-50A1]
gi|408021267|gb|EKG58531.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-56A1]
gi|408021480|gb|EKG58732.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-55A1]
gi|408029050|gb|EKG65876.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-52A1]
gi|408041004|gb|EKG77145.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-57A1]
gi|408061063|gb|EKG95658.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-51A1]
gi|408623301|gb|EKK96255.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-1A2]
gi|408638624|gb|EKL10511.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-55C2]
gi|408647255|gb|EKL18783.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-60A1]
gi|408648067|gb|EKL19498.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-59A1]
gi|408650474|gb|EKL21749.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-61A2]
gi|408849618|gb|EKL89631.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-02C1]
gi|408864946|gb|EKM04359.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-59B1]
gi|408870972|gb|EKM10234.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-55B2]
gi|443456472|gb|ELT20143.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-78A1]
Length = 448
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 133/410 (32%), Positives = 209/410 (50%), Gaps = 49/410 (11%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F++LGLD RL+ L ++ T IQQ +IPL + G+D++A +KTGSGKT A++LP+LH+
Sbjct: 3 FKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHK 62
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+ +K P L+LVPTREL +QVY E+ +++ G + +T +D
Sbjct: 63 SLKTKAFSAK-DPRGLILVPTRELAKQVYGELRSML----GGLSYTATLITGGENFNDQV 117
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL-S 206
ALA P ++ATPG + L L F + L+ LVLDEAD +L G+ +L+ + +
Sbjct: 118 KALARGPRFIVATPGRLADHLDHRSL----FLEGLETLVLDEADRMLDLGFAKELRRIHN 173
Query: 207 AVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
A R Q L+ SAT +DV+ + +L+ P + +G +E K++ Q + C
Sbjct: 174 AAKHRRRQTLMFSATLDHADVNDMAMELLNEPKRIA---IGVGSEE--HKDITQHFYLCD 228
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
D +L + + ++ +IFT T RL L + +K+ L+ L Q R I
Sbjct: 229 HLDHKEALLDRILADAEYRQVIIFTATRADTDRLTEKLNQSNLKAVALSGNLNQTQRNTI 288
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
+ +F +F L+ TD RG+D V
Sbjct: 289 MGQFERAVFKILVTTDVAS---------------------------------RGLDIPAV 315
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
VINF+MP++ YVHR+GRTGRA N G ++SLV P + F+ +++F+
Sbjct: 316 THVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWDSFKRVEAFL 365
>gi|169768960|ref|XP_001818950.1| ATP-dependent rRNA helicase RRP3 [Aspergillus oryzae RIB40]
gi|91207780|sp|Q2UNB7.1|RRP3_ASPOR RecName: Full=ATP-dependent rRNA helicase rrp3
gi|83766808|dbj|BAE56948.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 472
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 139/430 (32%), Positives = 212/430 (49%), Gaps = 52/430 (12%)
Query: 8 PSKEVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVV 67
P+ ++ E EA + KSF+ELGL +L A + G + PT IQ +IPL L+G+D++
Sbjct: 34 PNTTEQEQEPSEAPKQAPKSFKELGLIEQLCEACDSMGYKAPTAIQAEAIPLALQGRDLI 93
Query: 68 ARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCK 127
A+TGSGKT A+ LP+L L ++ P S LVL PTREL Q+ L
Sbjct: 94 GLAETGSGKTAAFALPILQALMDK--PSSFF---GLVLAPTRELAYQISQAFEGL----G 144
Query: 128 GQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILV 186
+ ++ L M AL P I++ATPG + L +K FS +LK LV
Sbjct: 145 STISVRSTVLVGGMDMVSQSIALGKKPHIIVATPGRLLDHLEN----TKGFSLRNLKYLV 200
Query: 187 LDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVG 246
+DEAD LL + L + V+PR + L SAT SS V+ L++ L NP + V
Sbjct: 201 MDEADRLLDMDFGPILDKILKVLPRERRTYLFSATMSSKVESLQRASLQNPLRVA---VS 257
Query: 247 DVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKF 306
K + + +QQ +I + K LY++ LL E V + +IF T+ RL FL
Sbjct: 258 SSKFQTV-STLQQSYIFIPHKHKDLYLVYLLN-EFVGQSCIIFCRTVHETQRLSFFLRLL 315
Query: 307 GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHP 366
G + L+ +L Q++RL L +F + D L+ATD
Sbjct: 316 GFGAIPLHGQLSQSARLGALGKFRSRSRDILVATDVA----------------------- 352
Query: 367 KAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMK 426
RG+D +V V+NF++P ++ ++HRIGRT RA +G ++S + +++
Sbjct: 353 ----------ARGLDIPSVDVVLNFDLPGDSKTFIHRIGRTARAGKSGVAISFATQYDVE 402
Query: 427 IFEEIKSFVG 436
+ I+ +G
Sbjct: 403 AWLRIEGALG 412
>gi|419797020|ref|ZP_14322524.1| DEAD/DEAH box helicase [Neisseria sicca VK64]
gi|385698868|gb|EIG29205.1| DEAD/DEAH box helicase [Neisseria sicca VK64]
Length = 457
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 132/413 (31%), Positives = 201/413 (48%), Gaps = 55/413 (13%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F +L LD ++ A+ +G + PT IQ +IP LEG+D++A A+TGSGKT A+LLP L R
Sbjct: 5 FADLNLDKNILSAVRSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
L S K P ALVL PTREL QV +A K + V +
Sbjct: 65 LTKRSEKPGK-GPRALVLTPTRELAAQVEKNALA---YAKNMRWFRTVSIVGGASFGYQT 120
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
AL+ P D+++ATPG + + +G K D L++L+LDEAD +L G+ DD++ +
Sbjct: 121 RALSKPVDLIVATPGRLMDLMQSG----KVDFDRLEVLILDEADRMLDMGFIDDIETIVE 176
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE- 266
P Q LL SAT V KL + + NP I+ + V D +++ + C +
Sbjct: 177 ATPTDRQTLLFSATWDGAVGKLARKLTKNPEIIEVERVDD------QGKIEEQLLYCDDM 230
Query: 267 --RDKLL-YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+++LL +IL ++ + +IFT+T M + L + G + L+ ++PQ R
Sbjct: 231 RHKNRLLDHILRDANID----QCVIFTSTKAMTEVIADDLYEKGFAANCLHGDMPQGWRN 286
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
L + G L+ATD RGID
Sbjct: 287 RTLMDLRKGRCKILVATDV---------------------------------AARGIDVP 313
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
+ VIN+++P+ A YVHRIGRTGRA TG +++ +E +I+ ++G
Sbjct: 314 TITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYIG 366
>gi|167580312|ref|ZP_02373186.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis TXDOH]
gi|167618435|ref|ZP_02387066.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis Bt4]
gi|257139776|ref|ZP_05588038.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
Length = 481
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 132/416 (31%), Positives = 212/416 (50%), Gaps = 54/416 (12%)
Query: 25 EKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPL 84
+ +F++ GL ++ A+ ++G PT IQ +IP++L G+DV+ A+TG+GKT ++ LP+
Sbjct: 10 DATFDQFGLAAEILRAIAEQGYTTPTPIQANAIPVVLSGRDVMGAAQTGTGKTASFSLPI 69
Query: 85 LHRLF---NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELC--KGQVQLKVVQLTS 139
+ RL N S+ ++ AL+L PTREL QV + V A + + V V +
Sbjct: 70 IQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNP 129
Query: 140 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE 199
M ++LR + +I+IATPG L V Q + ++ILVLDEAD +L G+
Sbjct: 130 QM--AELRRGV----EILIATPG----RLLDHVQQKTANLGQVQILVLDEADRMLDMGFL 179
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
DL+ + ++P+ Q LL SAT S ++ KL L NP + + + V Q
Sbjct: 180 PDLQRILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEV-----ARSNAAASTVTQ 234
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+E DK ++ L++ + K+ ++F N+ A RL +E+ GI +A ++ + Q
Sbjct: 235 IVYDVAEGDKQAAVVKLIR-DRSLKQVIVFCNSKIGASRLARQIERDGIVAAAIHGDRSQ 293
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
+ R+ L+ F G + L+ATD RG
Sbjct: 294 SERMQALDAFKRGEIEALVATDVA---------------------------------ARG 320
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+D + VINF++P NA YVHRIGRTGRA +G ++SL SP+E K +I+ +
Sbjct: 321 LDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLADIEKLI 376
>gi|344266640|ref|XP_003405388.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Loxodonta
africana]
Length = 461
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 133/423 (31%), Positives = 216/423 (51%), Gaps = 53/423 (12%)
Query: 15 AEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGS 74
A + + E EE K+F++LG+ L A ++ G KPT IQ +IPL L+G+D++ A+TGS
Sbjct: 19 APQPQVEEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGS 78
Query: 75 GKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKV 134
GKT A+ LP+L+ L +P+ ALVL PTREL Q+ + AL + ++
Sbjct: 79 GKTGAFALPILNALLE--TPQRLF---ALVLTPTRELAFQISEQFEAL----GSSIGVQS 129
Query: 135 VQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLL 193
+ + + ALA P IVIATPG + L +K F+ +LK LV+DEAD +
Sbjct: 130 AVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLE----NTKGFNLRALKYLVMDEADRI 185
Query: 194 LSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVI 253
L+ +E ++ + VIPR + L SAT + V KL++ L NP + K + +
Sbjct: 186 LNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTV 241
Query: 254 PKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAIL 313
K +QQ+++ + K Y++ +L EL ++F +T + R L L G + L
Sbjct: 242 EK-LQQYYLFIPSKFKDTYLVYILN-ELAGNSFMVFCSTCNNTQRTALLLRNLGFTAIPL 299
Query: 314 NAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSE 373
+ ++ Q RL L +F A L+ATD
Sbjct: 300 HGQMSQTKRLGSLNKFKAKARSILLATDVAS----------------------------- 330
Query: 374 FGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKS 433
RG+D +V V+NF++P ++ Y+HR+GRT RA +G S++ V+ ++++F+ I+
Sbjct: 331 ----RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRIEH 386
Query: 434 FVG 436
+G
Sbjct: 387 LIG 389
>gi|421477961|ref|ZP_15925746.1| DEAD/DEAH box helicase [Burkholderia multivorans CF2]
gi|400225606|gb|EJO55753.1| DEAD/DEAH box helicase [Burkholderia multivorans CF2]
Length = 487
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 134/416 (32%), Positives = 212/416 (50%), Gaps = 54/416 (12%)
Query: 25 EKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPL 84
+ +F++ GL ++ A+ ++G PT IQ +IP++L G+DV+ A+TG+GKT ++ LP+
Sbjct: 10 DATFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPI 69
Query: 85 LHRLF---NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELC--KGQVQLKVVQLTS 139
+ RL N S+ ++ AL+L PTREL QV + V A + + V V +
Sbjct: 70 IQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNP 129
Query: 140 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE 199
M ++LR + +I+IATPG L V Q + ++ILVLDEAD +L G+
Sbjct: 130 QM--AELRRGV----EILIATPG----RLLDHVQQKTANLGQVQILVLDEADRMLDMGFL 179
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
DL+ + ++P+ Q LL SAT S ++ KL L NP + + + NV Q
Sbjct: 180 PDLQRILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEV-----ARSNSTNANVTQ 234
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+E DK ++ LL+ + K+ ++F N+ A RL LE+ G+ ++ ++ + Q
Sbjct: 235 IVYDVAEGDKQAAVVQLLR-DRGLKQVIVFCNSKIGASRLARQLERDGVVASAIHGDKSQ 293
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
R+ L+ F G + L+ATD RG
Sbjct: 294 LERMQALDAFKRGEIEALVATDV---------------------------------AARG 320
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+D + VINF++P NA YVHRIGRTGRA TG ++SL SP+E K +I+ +
Sbjct: 321 LDIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQLADIEKLI 376
>gi|432107717|gb|ELK32877.1| Putative ATP-dependent RNA helicase DDX47 [Myotis davidii]
Length = 455
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 133/424 (31%), Positives = 217/424 (51%), Gaps = 53/424 (12%)
Query: 14 QAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTG 73
+A + E EE K+F++LG+ L A ++ G KPT IQ +IPL L+G+D++ A+TG
Sbjct: 12 EAPQPAVEEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQVEAIPLALQGRDIIGLAETG 71
Query: 74 SGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLK 133
SGKT A+ LP+L+ L +P+ ALVL PTREL Q+ + AL + ++
Sbjct: 72 SGKTGAFALPILNALLE--TPQRLF---ALVLTPTRELAFQISEQFEAL----GSSIGVQ 122
Query: 134 VVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADL 192
+ + + ALA P +VIATPG + L +K F+ +LK LV+DEAD
Sbjct: 123 TAVIVGGIDSMSQSLALAKKPHVVIATPGRLIDHLE----NTKGFNLRALKYLVMDEADR 178
Query: 193 LLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEV 252
+L+ +E ++ + VIPR + L SAT + V KL++ L +P + K +
Sbjct: 179 ILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKDPVKCAVSS----KYQT 234
Query: 253 IPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAI 312
+ K +QQ++I + K Y++ +L EL +IF +T + R L L G +
Sbjct: 235 VEK-LQQYYIFIPSKFKDTYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIP 292
Query: 313 LNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDS 372
L+ ++ Q+ RL L +F A L+ATD
Sbjct: 293 LHGQMSQSKRLGSLNKFKAKARSILLATDVAS---------------------------- 324
Query: 373 EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432
RG+D +V V+NF++P ++ Y+HR+GRT RA +G S++ V+ ++++F+ I+
Sbjct: 325 -----RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRIE 379
Query: 433 SFVG 436
+G
Sbjct: 380 HLIG 383
>gi|119471950|ref|ZP_01614235.1| ATP-dependent RNA helicase, DEAD box family protein
[Alteromonadales bacterium TW-7]
gi|119445208|gb|EAW26499.1| ATP-dependent RNA helicase, DEAD box family protein
[Alteromonadales bacterium TW-7]
Length = 440
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 139/413 (33%), Positives = 206/413 (49%), Gaps = 49/413 (11%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F +LG+D RL L +GI +PT IQ ++P L G D+ A++KTGSGKT A+LLP + R
Sbjct: 3 FTDLGIDTRLETQLAHQGITQPTDIQAHAVPTALAGHDIFAQSKTGSGKTLAFLLPAVQR 62
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+ + + SK P L++ PTREL QV++++ LI +K V++ +D
Sbjct: 63 VMKQKAL-SKRDPRVLIVAPTRELATQVFTQLRLLI----AGTAIKAVKVLGGENFNDQI 117
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS- 206
AL P V+ATPG + ++ LQ L++L+ DEAD +L G+ + LK ++
Sbjct: 118 KALRNDPQFVVATPGRLADHVTKRSLQLS----GLELLIFDEADRILDLGFTEQLKLIND 173
Query: 207 AVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
R Q LL SAT + VD L + +L P +TL + ++ Q +++
Sbjct: 174 EANHRLRQTLLFSATLDHAQVDALSRNLLKKPKQITLSAANEQHSDI----TQTLYLADH 229
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
K + LK + V + +IFT T RL L G KS L +L Q+ RL I
Sbjct: 230 LDHKEALLAHFLKQDEV-GQCIIFTATRADTSRLSEELNNKGFKSVALAGDLTQSKRLDI 288
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
++ F+ G F LI TD RG+D +V
Sbjct: 289 MDSFSRGNFKILITTDVAS---------------------------------RGLDLLSV 315
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD 438
VINF++P++A YVHRIGRTGRA G ++SLV P + + IKSF+ D+
Sbjct: 316 THVINFDLPKHAEEYVHRIGRTGRAGFKGTAISLVGPKDWASYLAIKSFLNDE 368
>gi|421750235|ref|ZP_16187502.1| helicase, partial [Cupriavidus necator HPC(L)]
gi|409770743|gb|EKN53287.1| helicase, partial [Cupriavidus necator HPC(L)]
Length = 423
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 135/419 (32%), Positives = 211/419 (50%), Gaps = 54/419 (12%)
Query: 24 EEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLP 83
++ +F+ GLD R++ AL+++G KPT IQ +IP++L GKDV+ A+TG+GKT + LP
Sbjct: 17 DDITFDSFGLDPRVLRALSEQGYTKPTPIQAQAIPVVLLGKDVMGAAQTGTGKTAGFALP 76
Query: 84 LLHRLF---NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSS 140
++ RL N S+ ++ AL+L PTREL QVY V L+ +
Sbjct: 77 IIQRLLPLANASASPARHPVRALMLTPTRELADQVYDNVARYAR----HTDLRSTVVFGG 132
Query: 141 MPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS-LKILVLDEADLLLSYGYE 199
+ + AL +I++ATPG + L +Q KS + S +++LVLDEAD +L G+
Sbjct: 133 VDMNPQTDALRRGVEILVATPG---RLLDH--VQQKSVNLSQVQMLVLDEADRMLDMGFL 187
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
DL+ + ++P Q LL SAT S ++ KL LH P + + + NV+Q
Sbjct: 188 PDLQRIINLLPAKRQTLLFSATFSPEIKKLAASYLHQPVTIEVARSNSANE-----NVRQ 242
Query: 260 FWISCSERDKLLYILTLLKLELVQ---KKALIFTNTIDMAFRLKLFLEKFGIKSAILNAE 316
+ K ++ LLK Q ++ ++F N+ RL LE+ GI +A ++ +
Sbjct: 243 TVYQVQDGQKQEAVVHLLKQRADQGLSRQCIVFVNSKIGCSRLARHLEREGINAAAIHGD 302
Query: 317 LPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGV 376
Q R+ LE F G D L+ATD
Sbjct: 303 KTQTERMQTLEGFKQGTIDALVATD---------------------------------VA 329
Query: 377 VRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
RG+D ++ VINF++P NA YVHRIGRTGRA TG ++S+ P + ++ +I+ +
Sbjct: 330 ARGLDIADMPCVINFDLPFNAEDYVHRIGRTGRAGATGDALSIFVPGDERLLADIEKML 388
>gi|183221518|ref|YP_001839514.1| ATP-dependent RNA helicase [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Paris)']
gi|189911602|ref|YP_001963157.1| superfamily II DNA and RNA helicase [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167776278|gb|ABZ94579.1| Superfamily II DNA and RNA helicase [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167779940|gb|ABZ98238.1| ATP-dependent RNA helicase [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Paris)']
Length = 529
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 134/408 (32%), Positives = 196/408 (48%), Gaps = 48/408 (11%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F EL L AL+K G + T IQ SIP +EG D+ A+TG+GKT A+LLP LHR
Sbjct: 3 FNELPFHESLSKALDKIGYVELTPIQAKSIPFAMEGNDLTGLAQTGTGKTMAFLLPTLHR 62
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
L S+ + + P ALVL PTREL Q+ E L+E L V +
Sbjct: 63 LL--SAEEEEALPYALVLAPTRELTIQIAEEAKKLLEFT----DLGVATIIGGTDYKSQE 116
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
AL I++ATPG + + L +++K+++LDEAD + G+ DLK +
Sbjct: 117 QALGNKACIIVATPGRLIDFVKNHGLS----LENIKVVILDEADRMFDMGFVQDLKYIFH 172
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 267
Q LL SAT S +V +L L++P EV ++VI + + Q +
Sbjct: 173 KCKNRKQSLLFSATLSYEVVRLASKYLNDPI-----EVHINPEKVITERIDQSLLHLGRE 227
Query: 268 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 327
+KL Y++ L ++ +IFTN ++ L +FGI + L++EL Q R+ +L
Sbjct: 228 EKLPYLVNSLLNYPIEGLGIIFTNYKMNIPKIVSALRRFGITATGLSSELDQKKRIRLLR 287
Query: 328 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 387
+F AG + YLIATD RGID +N+
Sbjct: 288 DFKAGKYKYLIATDVAS---------------------------------RGIDIENIDV 314
Query: 388 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
V N+++PQ+A YVHRIGRT RA G S+ S + E I+ ++
Sbjct: 315 VYNYDLPQDAENYVHRIGRTARAGRKGQSIGFCSETDYTELERIEKYL 362
>gi|142982611|sp|P0C2N8.1|DRS1_NEUCR RecName: Full=ATP-dependent RNA helicase drs-1
Length = 829
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 139/429 (32%), Positives = 213/429 (49%), Gaps = 52/429 (12%)
Query: 24 EEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLP 83
E SF+E+ L ++ L G KPT IQ +IP+ L GKDVV A TGSGKT A+++P
Sbjct: 291 EMSSFQEMSLSRPILRGLTSVGFTKPTPIQAKTIPISLMGKDVVGGAVTGSGKTAAFVVP 350
Query: 84 LLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPA 143
+L RL PK ++L PTREL Q ++ + L + L V L+ +
Sbjct: 351 ILERLLYR--PKKVPTTRVVILTPTRELAIQCHAVAVKLASHTDIKFCLAVGGLSLKVQE 408
Query: 144 SDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDL 202
++LR PD+VIATPG + S SF+ D+++ILVLDEAD +L G+ D+L
Sbjct: 409 AELRLR----PDVVIATPGRFIDHMRN----SASFAVDTIEILVLDEADRMLEDGFADEL 460
Query: 203 KALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-- 260
+ +P+ Q +L SAT +S VD+L + L+ P + + D + + VQ+F
Sbjct: 461 NEILTTLPKSRQTMLFSATMTSSVDRLIRAGLNKPVRI----MADSQKKTAGTLVQEFVR 516
Query: 261 WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 320
E + Y+L + K + ++ +IF +A ++++ FG+ A L+ + Q
Sbjct: 517 LRPGRESKREGYLLHICKT-IYTERVIIFFRQKKIAHKMRIIFGLFGLSCAELHGSMNQA 575
Query: 321 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 380
R+ +E+F G ++L+ATD L S RG+
Sbjct: 576 QRIQSVEDFRDGKVNFLLATD----------------------------LAS-----RGL 602
Query: 381 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS-PDEMKIFEEIKSFVGDDE 439
D K V TVIN+E PQ YVHR+GRT RA +G +++L + PD + +K+
Sbjct: 603 DIKGVDTVINYEAPQTPEIYVHRVGRTARAGRSGTAITLAAEPDRKVVKAAVKAGKSQGA 662
Query: 440 NEDSNIIAP 448
S II P
Sbjct: 663 KISSRIIDP 671
>gi|410612255|ref|ZP_11323335.1| ATP-dependent RNA helicase RhlE [Glaciecola psychrophila 170]
gi|410168256|dbj|GAC37224.1| ATP-dependent RNA helicase RhlE [Glaciecola psychrophila 170]
Length = 410
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 138/407 (33%), Positives = 203/407 (49%), Gaps = 51/407 (12%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF L LD L A+ G + PT IQQ +IP IL+GKD++A A+TG+GKT A+ LP+L
Sbjct: 2 SFSSLALDKSLTDAIKALGYEIPTPIQQQAIPAILDGKDIMAGAQTGTGKTAAFALPILQ 61
Query: 87 RLFNESSPKSKLAPA-ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASD 145
+L + L P ALVL PTREL QQVY + E QLKV + +
Sbjct: 62 QLIKYADA---LRPIRALVLTPTRELAQQVYKNFVGYAE----NTQLKVAVAYGGVSINP 114
Query: 146 LRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL 205
+AL DI+IATPG + ++ G + L+ +V DEAD +L G++D++ +
Sbjct: 115 QISALERGVDILIATPGRLLDLIAKGNVDLS----QLQTIVFDEADRMLDMGFKDEIDQI 170
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
+ +P Q LL SAT + KL K +L+NP ++ + E V+Q +
Sbjct: 171 LSRLPNKRQTLLFSATFDDAIFKLSKTLLNNPVLIEVSE-----RNTAAAQVEQL-VYTV 224
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
+ D+ + + L + LIFT T MA L + K GI++ ++ + Q +R +
Sbjct: 225 DNDRKRELTSFLIGSKNWHQVLIFTRTKQMADDLAKEMCKDGIQTQSIHGDKSQGARERV 284
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
L EF G L+ATD RGID ++
Sbjct: 285 LAEFKQGKTRALVATD---------------------------------VAARGIDIIDL 311
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432
VIN+E+P A Y+HRIGRTGRA N G ++SL+SP+E + E ++
Sbjct: 312 KYVINYELPYVAEDYIHRIGRTGRAGNAGLAISLMSPNEEWLLEAVE 358
>gi|339444851|ref|YP_004710855.1| hypothetical protein EGYY_12990 [Eggerthella sp. YY7918]
gi|338904603|dbj|BAK44454.1| hypothetical protein EGYY_12990 [Eggerthella sp. YY7918]
Length = 418
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 131/412 (31%), Positives = 204/412 (49%), Gaps = 47/412 (11%)
Query: 25 EKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPL 84
+ +FE+LGL + + + G +PT +QQ +IPL+L G+DVVA AKTG+GKT A+ LPL
Sbjct: 2 DTTFEDLGLSEATLSTVARLGFTEPTPVQQQAIPLVLAGRDVVAAAKTGTGKTAAFALPL 61
Query: 85 LHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
+ RL + + + +P LV+ PTREL QQ+ + A ++ +G +++V+ + MP
Sbjct: 62 IERLAGDEAKRRPGSPRVLVVTPTRELAQQIDA---ACSDMTRGS-RVRVLSVVGGMPYK 117
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
A L DI+IATPG + + G ++ D ++ LVLDEAD +L G+ +K
Sbjct: 118 GQIARLNKGIDILIATPGRLFDLMQRGDVK----LDRVETLVLDEADRMLDMGFWPTMKK 173
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264
+ A P Q LL SAT V IL++P + + G+ D V Q+ I
Sbjct: 174 IVAATPASRQTLLFSATIERKVMDSVSTILNDPAFVEIAHRGETAD-----TVDQYVIPV 228
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
++ K + +L+ + + ++F T A L G + ++++ Q R
Sbjct: 229 TQMKKPALLRAVLE-DKGADRVIVFVRTRQRADMCTHQLRAAGYRVDSIHSDKTQAQRKR 287
Query: 325 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 384
L+ F+ G D L+ATD + RGID
Sbjct: 288 ALDGFSEGKTDVLVATD---------------------------------VLARGIDVSL 314
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
VH VIN+++P N Y+HRIGRTGRA G ++S VSPD +I+ +G
Sbjct: 315 VHHVINYDLPDNPEDYIHRIGRTGRAGEAGYAISFVSPDSKAALVDIERLIG 366
>gi|452002395|gb|EMD94853.1| hypothetical protein COCHEDRAFT_1128751 [Cochliobolus
heterostrophus C5]
Length = 815
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 127/412 (30%), Positives = 203/412 (49%), Gaps = 54/412 (13%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF+ + L ++ L G +PT IQ ++P+ ++GKDVV A+TGSGKT A+L+P+L
Sbjct: 290 SFQAMSLSRPILRGLASVGFTEPTPIQSKAVPIAMQGKDVVGGAETGSGKTAAFLIPILE 349
Query: 87 RLFNESS--PKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
RL P +++A + +PTREL Q ++ L + + +
Sbjct: 350 RLLYRQKKIPTTRVA----IFMPTRELAVQCFNVATKLASFT----DITFALMAGGFSSR 401
Query: 145 DLRAALAGPPDIVIATPG-CMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLK 203
+ A L PD+VIATPG + +T Q ++L+ILVLDEAD +L G+E L
Sbjct: 402 EQEAVLKTRPDVVIATPGRFIDHMHNTAAFQ----VENLEILVLDEADRMLEEGFESQLN 457
Query: 204 ALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-WI 262
+ IP+ Q +L SAT +S VDKL ++ + P L + D K + + Q+F +
Sbjct: 458 EILTTIPKSRQTMLFSATMTSSVDKLIRIGMDKPVRLMV----DSKKQTVKGLTQEFVRL 513
Query: 263 SCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 322
+ DK L L + ++ +K ++F A R+++ G+K++ L+ + Q R
Sbjct: 514 RQGKEDKRLAYLMYICEKIYTEKVIVFFRQKKEAHRVRVVFALCGLKASELHGNMSQEQR 573
Query: 323 LHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDF 382
+ +E F +G YL+ATD RG+D
Sbjct: 574 IQAVEAFRSGKSSYLLATDVAS---------------------------------RGLDI 600
Query: 383 KNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS-PDEMKIFEEIKS 433
KNV TVIN+E PQ Y+HR+GRT RA +G + +L + PD + + +K+
Sbjct: 601 KNVSTVINYEAPQTHEIYLHRVGRTARAGRSGRACTLAAEPDRKVVKQAVKA 652
>gi|424590984|ref|ZP_18030417.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1037(10)]
gi|408033482|gb|EKG70029.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1037(10)]
Length = 448
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 133/410 (32%), Positives = 210/410 (51%), Gaps = 49/410 (11%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F++LGLD RL+ L ++ T IQQ +IPL + G+D++A +KTGSGKT A++LP+LH+
Sbjct: 3 FKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHK 62
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+ +K P L+LVPTREL +QVY E+ +++ G + +T +D
Sbjct: 63 SLKTKAFSAK-DPRGLILVPTRELAKQVYGELRSML----GGLSYTATLITGGENFNDQV 117
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL-S 206
ALA P ++ATPG + L L F + L+ LVLDEAD +L G+ +L+ + +
Sbjct: 118 KALARGPRFIVATPGRLADHLDHRSL----FLEGLETLVLDEADRMLDLGFAKELRRIHN 173
Query: 207 AVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
A R Q L+ SAT +DV+ + +L+ P + +G +E K++ Q + C
Sbjct: 174 AAKHRRRQTLMFSATLDHADVNDMAMELLNEPKRIA---IGVGSEE--HKDITQHFYLCD 228
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
D +L + + ++ +IFT T RL L + +K+ L+ L Q R I
Sbjct: 229 HLDHKEALLDRILADAEYRQVIIFTATRADTDRLTEKLNQSNLKAVALSGNLNQTQRNTI 288
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
+ +F +F L+ TD RG+D V
Sbjct: 289 MGQFERAVFKILVTTDVAS---------------------------------RGLDIPAV 315
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
VINF+MP++ YVHR+GRTGRA N G ++SLV P + + F+ +++F+
Sbjct: 316 THVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKRVEAFL 365
>gi|419836874|ref|ZP_14360314.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-46B1]
gi|421343305|ref|ZP_15793709.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-43B1]
gi|423734316|ref|ZP_17707529.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-41B1]
gi|424008600|ref|ZP_17751548.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-44C1]
gi|395941872|gb|EJH52549.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-43B1]
gi|408631161|gb|EKL03720.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-41B1]
gi|408857424|gb|EKL97112.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-46B1]
gi|408865386|gb|EKM04789.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-44C1]
Length = 448
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 133/410 (32%), Positives = 210/410 (51%), Gaps = 49/410 (11%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F++LGLD RL+ L ++ T IQQ +IPL + G+D++A +KTGSGKT A++LP+LH+
Sbjct: 3 FKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHK 62
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+ +K P L+LVPTREL +QVY E+ +++ G + +T +D
Sbjct: 63 SLKTKAFSAK-DPRGLILVPTRELAKQVYGELRSML----GGLSYTATLITGGENFNDQV 117
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL-S 206
ALA P ++ATPG + L L F + L+ LVLDEAD +L G+ +L+ + +
Sbjct: 118 KALARGPRFIVATPGRLADHLGHRSL----FLEGLETLVLDEADRMLDLGFAKELRRIHN 173
Query: 207 AVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
A R Q L+ SAT +DV+ + +L+ P + +G +E K++ Q + C
Sbjct: 174 AAKHRRRQTLMFSATLDHADVNDMAMELLNEPKRIA---IGVGSEE--HKDITQHFYLCD 228
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
D +L + + ++ +IFT T RL L + +K+ L+ L Q R I
Sbjct: 229 HLDHKEALLDRILADAEYRQVIIFTATRADTDRLTEKLNQSNLKAVALSGNLNQTQRNTI 288
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
+ +F +F L+ TD RG+D V
Sbjct: 289 MGQFERAVFKILVTTDVAS---------------------------------RGLDIPAV 315
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
VINF+MP++ YVHR+GRTGRA N G ++SLV P + + F+ +++F+
Sbjct: 316 THVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKRVEAFL 365
>gi|422909459|ref|ZP_16944107.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-09]
gi|424658842|ref|ZP_18096093.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-16]
gi|341635148|gb|EGS59872.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-09]
gi|408053917|gb|EKG88915.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-16]
Length = 448
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 133/410 (32%), Positives = 209/410 (50%), Gaps = 49/410 (11%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F++LGLD RL+ L ++ T IQQ +IPL + G+D++A +KTGSGKT A++LP+LH+
Sbjct: 3 FKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHK 62
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+ +K P L+LVPTREL +QVY E+ +++ G + +T +D
Sbjct: 63 SLKTKAFSAK-DPRGLILVPTRELAKQVYGELRSML----GGLSYTATLITGGENFNDQV 117
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL-S 206
ALA P ++ATPG + L L F + L+ LVLDEAD +L G+ +L+ + S
Sbjct: 118 NALARGPRFIVATPGRLADHLEHRSL----FLEGLETLVLDEADRMLDLGFAKELRRIHS 173
Query: 207 AVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
A R Q L+ SAT +DV+ + +L+ P + +G +E K++ Q + C
Sbjct: 174 AAKHRRRQTLMFSATLDHADVNDMAMELLNEPKRIA---IGVGSEE--HKDITQHFYLCD 228
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
D +L + + ++ ++FT T RL L + +K+ L+ L Q R I
Sbjct: 229 HLDHKEALLDRILADADYRQVIVFTATRADTDRLTEKLNQSNLKAVALSGNLNQTQRNTI 288
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
+ +F +F L+ TD RG+D V
Sbjct: 289 MGQFERAVFKILVTTDVAS---------------------------------RGLDIPAV 315
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
VINF+MP++ YVHR+GRTGRA N G ++SLV P + F+ +++F+
Sbjct: 316 THVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWDSFKRVEAFL 365
>gi|258622174|ref|ZP_05717200.1| ATP-dependent RNA helicase, DEAD box family [Vibrio mimicus VM573]
gi|424808745|ref|ZP_18234134.1| ATP-dependent RNA helicase, DEAD box family [Vibrio mimicus SX-4]
gi|258585498|gb|EEW10221.1| ATP-dependent RNA helicase, DEAD box family [Vibrio mimicus VM573]
gi|342323697|gb|EGU19480.1| ATP-dependent RNA helicase, DEAD box family [Vibrio mimicus SX-4]
Length = 452
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 135/415 (32%), Positives = 210/415 (50%), Gaps = 49/415 (11%)
Query: 23 EEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLL 82
E F++LGLD RL+ L ++ T IQQ +IPL + G+D++A +KTGSGKT A++L
Sbjct: 2 ENTLQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLSIAGRDLLASSKTGSGKTLAFVL 61
Query: 83 PLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMP 142
P+LH+ + +K P ++LVPTREL +QVY E+ +++ G + +T
Sbjct: 62 PMLHKSLKNKAFSAK-DPRGVILVPTRELAKQVYGELRSML----GGLSYTATLITGGEN 116
Query: 143 ASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 202
+D ALA P ++ATPG + L L F D L+ LVLDEAD +L G+ +L
Sbjct: 117 FNDQVKALARDPKFIVATPGRLADHLDHRSL----FLDGLETLVLDEADRMLDLGFAKEL 172
Query: 203 KAL-SAVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF 260
+ + +A R Q L+ SAT +DV+ + +L+ P + +G +E K++ Q
Sbjct: 173 RRIHNAAKHRRRQTLMFSATLDHADVNDIAMEMLNEPKRIA---IGVGSEE--HKDITQH 227
Query: 261 WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 320
+ C D +L + + ++ +IFT T RL L + +K+ L+ L Q
Sbjct: 228 FYLCDHLDHKEALLERILADAEYRQVIIFTATRADTDRLTEKLNQSNLKAVALSGNLNQA 287
Query: 321 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 380
R I+ +F +F L+ TD RG+
Sbjct: 288 QRNTIMSQFERVVFKILVTTDVAS---------------------------------RGL 314
Query: 381 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
D V VINF+MP++ YVHRIGRTGRA N G ++SLV P + F+ +++F+
Sbjct: 315 DIPTVTHVINFDMPKHTEEYVHRIGRTGRAGNKGDAMSLVGPKDWDSFKRVEAFL 369
>gi|145539279|ref|XP_001455334.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124423133|emb|CAK87937.1| unnamed protein product [Paramecium tetraurelia]
Length = 451
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 137/426 (32%), Positives = 212/426 (49%), Gaps = 63/426 (14%)
Query: 16 EEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSG 75
+++E + +F+ELG+ L A K G + PT IQQ S+P L+ KD++ A+TGSG
Sbjct: 2 DQQEEQQISSVTFKELGVCEELSSACEKLGYKIPTPIQQQSLPYTLQKKDIIGLAETGSG 61
Query: 76 KTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVV 135
KT A+ LP+L L P AL+L PTRELC Q+ A+ + LK V
Sbjct: 62 KTLAFGLPILQHLLANPQPYY-----ALILSPTRELCVQIQEHFQAI----GASIALKSV 112
Query: 136 QLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLL 194
+ M ALA P I+I TPG + L +K F+ LK LVLDEAD LL
Sbjct: 113 VILGGMDPLAQAKALAQKPHIIIGTPGKILYHLEN----TKGFNLKQLKFLVLDEADKLL 168
Query: 195 SYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIP 254
+ +E ++ A+ +IP+ L SAT ++ V KL++ L +P VK EV
Sbjct: 169 NMDFEREINAILDIIPKERNTYLFSATMTNKVSKLQRASLKDP----------VKIEVSS 218
Query: 255 K-----NVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIK 309
K +QQ ++ ++ K Y++ LL EL +++F T MA ++ L L G +
Sbjct: 219 KYQTVSTLQQNYLFVPDKYKETYLVYLLN-ELAGLTSIVFVATCQMAIKITLLLRNLGFQ 277
Query: 310 SAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAK 369
+ ++ ++ Q RL +F + + LIATD
Sbjct: 278 AIAIHGQMSQAKRLSSFNKFKSKESNLLIATDVAS------------------------- 312
Query: 370 LDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFE 429
RG+D V V+NF++PQNA YVHR+GRT RA +G ++SLV+ ++++++
Sbjct: 313 --------RGLDIPFVDLVLNFDIPQNAKEYVHRVGRTARAGKSGKAISLVTQYDVEMYQ 364
Query: 430 EIKSFV 435
+I+ +
Sbjct: 365 KIEQLI 370
>gi|157961286|ref|YP_001501320.1| DEAD/DEAH box helicase [Shewanella pealeana ATCC 700345]
gi|157846286|gb|ABV86785.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
700345]
Length = 442
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 144/422 (34%), Positives = 212/422 (50%), Gaps = 54/422 (12%)
Query: 15 AEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGS 74
A + A+ + F +LGL L+ L KPT IQ IP +L+GKDV+ AKTGS
Sbjct: 12 ATQTVADTQAHSDFTQLGLIPELLETLKLLSYTKPTAIQSHIIPAVLDGKDVLGGAKTGS 71
Query: 75 GKTFAYLLPLLHRLFNESSPKSKLAP--AALVLVPTRELCQQVYSEVMALIELCKGQVQL 132
GKT A+ LP++ +L ++SP+ + LVLVPTREL QQV M +L K L
Sbjct: 72 GKTAAFALPIIQKL-AKASPRKAGGNFVSCLVLVPTRELAQQVADSFMRYSQLIKP--NL 128
Query: 133 KVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADL 192
K + + + + +L G DIV+ATPG + +S+ L+ D+ LVLDEAD
Sbjct: 129 KTLAVYGGVSTNVQMQSLRGGADIVVATPGRLIDLISSNALK----LDNTTTLVLDEADR 184
Query: 193 LLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL--PEVGDVKD 250
+LS G+ ++L L A +P+ Q LL SAT +V +L +L+NP + L E +
Sbjct: 185 MLSLGFTEELNELLAKLPKTKQTLLFSATFPEEVRELTDSLLNNPVEVQLQSSEESTLVQ 244
Query: 251 EVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 310
VI N R++ +L L + ++ LIF + RL LE GI +
Sbjct: 245 RVITVN----------RNRKTALLAQLIKDNQWQQVLIFASAKYSCNRLAQKLENAGITA 294
Query: 311 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL 370
+ +++ Q +R +LEEF +G LIATD
Sbjct: 295 EVFHSDKGQGARNRVLEEFKSGEISVLIATDI---------------------------- 326
Query: 371 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE 430
RGID + + VINFE+P++ Y+HRIGR+GRA G ++SL+S DE + F+
Sbjct: 327 -----AARGIDIEKLPIVINFELPRSPVDYMHRIGRSGRAGEAGLAMSLISHDEYQHFKL 381
Query: 431 IK 432
I+
Sbjct: 382 IE 383
>gi|57529371|ref|NP_001006293.1| probable ATP-dependent RNA helicase DDX27 [Gallus gallus]
gi|53130268|emb|CAG31463.1| hypothetical protein RCJMB04_6k21 [Gallus gallus]
Length = 758
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 144/431 (33%), Positives = 206/431 (47%), Gaps = 49/431 (11%)
Query: 3 KSKEIPSKEVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILE 62
+SK+ KE + E+ +E ++ SF+++ L L+ A+ G ++PT IQ+A IP+ L
Sbjct: 157 RSKKGGQKEAESFFEDASEYDDNLSFQDMNLSRPLLKAITALGFKQPTPIQKACIPVGLL 216
Query: 63 GKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMAL 122
GKD+ A A TG+GKT A++LP+L RL + P+ LVLVPTREL QV+S L
Sbjct: 217 GKDICACAATGTGKTAAFILPVLERLIYK--PRQAPITRVLVLVPTRELGIQVHSVTKQL 274
Query: 123 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DS 181
+ L V + AAL PDI+IATPG + L SF S
Sbjct: 275 AQFSSVTTCLAV----GGLDVKTQEAALRSGPDILIATPGRLIDHLHN----CPSFHLSS 326
Query: 182 LKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILT 241
+++L+LDEAD +L +E+ +K + + R Q +L SAT + +V L + L NP +
Sbjct: 327 VEVLILDEADRMLDEYFEEQMKEIIRLCSRHRQTMLFSATMTEEVKDLASVSLKNPTRIF 386
Query: 242 LPEVGDVKDEVIPKNVQQFW-ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLK 300
+ D V P Q+F I + I++ L ++FT T A R+
Sbjct: 387 VNSNTD----VAPFLRQEFIRIRPNREGDREAIVSALLTRTFPDHVMLFTQTKKQAHRMH 442
Query: 301 LFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSR 360
+ L G++ L+ L Q RL L F D L+ATD
Sbjct: 443 ILLGLMGLRVGELHGNLSQAQRLEALRRFKDEQIDILVATD------------------- 483
Query: 361 KSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLV 420
RG+D + V TVINF MP YVHR+GRT RA G SVSLV
Sbjct: 484 --------------VAARGLDIEGVKTVINFTMPNTTKHYVHRVGRTARAGRAGRSVSLV 529
Query: 421 SPDEMKIFEEI 431
+E K+ +EI
Sbjct: 530 GEEERKMLKEI 540
>gi|426371741|ref|XP_004052800.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Gorilla gorilla gorilla]
Length = 455
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 133/424 (31%), Positives = 217/424 (51%), Gaps = 53/424 (12%)
Query: 14 QAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTG 73
+A + E EE K+F++LG+ L A ++ G KPT IQ +IPL L+G+D++ A+TG
Sbjct: 12 EASQPIVEEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQVEAIPLALQGRDIIGLAETG 71
Query: 74 SGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLK 133
SGKT A+ LP+L+ L +P+ ALVL PTREL Q+ + AL + ++
Sbjct: 72 SGKTGAFALPILNALLE--TPQRLF---ALVLTPTRELAFQISEQFEAL----GSSIGVQ 122
Query: 134 VVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADL 192
+ + + ALA P I+IATPG + L +K F+ +LK LV+DEAD
Sbjct: 123 SAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLE----NTKGFNLRALKYLVMDEADR 178
Query: 193 LLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEV 252
+L+ +E ++ + VIPR + L SAT + V KL++ L NP + K +
Sbjct: 179 ILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQT 234
Query: 253 IPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAI 312
+ K +QQ++I + K Y++ +L EL +IF +T + R L L G +
Sbjct: 235 VEK-LQQYYIFIPSKFKDTYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIP 292
Query: 313 LNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDS 372
L+ ++ Q+ RL L +F A L+ATD
Sbjct: 293 LHGQMSQSKRLGSLNKFKAKARSILLATDVAS---------------------------- 324
Query: 373 EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432
RG+D +V V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+
Sbjct: 325 -----RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIE 379
Query: 433 SFVG 436
+G
Sbjct: 380 HLIG 383
>gi|27367363|ref|NP_762890.1| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6]
gi|27358932|gb|AAO07880.1| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6]
Length = 398
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 142/412 (34%), Positives = 212/412 (51%), Gaps = 52/412 (12%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF +LGL L A++ G KPT IQ +IP+ILEG+D++A A+TG+GKT +++LP+L
Sbjct: 2 SFTQLGLCASLTDAIDTLGYPKPTRIQTQAIPVILEGRDLIAAAQTGTGKTASFVLPMLE 61
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQ-VQLKVVQLTSSMPASD 145
+L + + K K AL+LVPTREL QV ++ GQ + L+ + + +
Sbjct: 62 KLRHGQTQKKKRI-RALILVPTRELAIQVDEKIKQY-----GQNLALRSLAMFGGVDEKA 115
Query: 146 LRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL 205
+ AL DI++ATPG + Q + + +++LVLDEAD +L G+ DD+ +
Sbjct: 116 QKQALIEGLDILVATPGRLLDMYG----QRAVYFEEIEMLVLDEADRMLDMGFIDDINKI 171
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
+P Q LL SAT S+ V L K +HNP+ E+ + N++Q WI
Sbjct: 172 LDRLPENIQHLLFSATLSNKVRDLAKSAIHNPF-----EISIAAKQASKSNIEQ-WIITV 225
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
++D+ +L+ L E + LIF T A +L LEK GI + ++ Q R +
Sbjct: 226 DKDQKSALLSHLIKENQWDQTLIFIETKHGAAKLVSQLEKRGIVAEAFHSGRSQAVREQL 285
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGV-VRGIDFKN 384
LE+F AG YL++T GV RGID +
Sbjct: 286 LEDFKAGKIKYLVST----------------------------------GVAARGIDIEA 311
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
+ V+N+++P A YVHRIGRTGRA G ++SLVS D K I+S +G
Sbjct: 312 LPRVVNYDLPFPADEYVHRIGRTGRANAKGEAISLVSKDNFKNLCMIESRLG 363
>gi|417822866|ref|ZP_12469464.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE48]
gi|422306349|ref|ZP_16393530.1| type III restriction enzyme, res subunit [Vibrio cholerae
CP1035(8)]
gi|422920347|ref|ZP_16953670.1| DEAD/DEAH box helicase family protein [Vibrio cholerae BJG-01]
gi|340048996|gb|EGR09912.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE48]
gi|341650410|gb|EGS74276.1| DEAD/DEAH box helicase family protein [Vibrio cholerae BJG-01]
gi|408626622|gb|EKK99465.1| type III restriction enzyme, res subunit [Vibrio cholerae
CP1035(8)]
Length = 448
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 133/410 (32%), Positives = 210/410 (51%), Gaps = 49/410 (11%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F++LGLD RL+ L ++ T IQQ +IPL + G+D++A +KTGSGKT A++LP+LH+
Sbjct: 3 FKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHK 62
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+ +K P L+LVPTREL +QVY E+ +++ G + +T +D
Sbjct: 63 SLKTKAFSAK-DPRGLILVPTRELAKQVYGELRSML----GGLSYTATLITGGENFNDQV 117
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL-S 206
ALA P ++ATPG + L L F + L+ LVLDEAD +L G+ +L+ + +
Sbjct: 118 KALARGPRFIVATPGRLADHLDHRSL----FLEGLETLVLDEADRMLDLGFAKELRRIHN 173
Query: 207 AVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
A R Q L+ SAT +DV+ + +L+ P + +G +E K++ Q + C
Sbjct: 174 AAKHRRRQTLMFSATLDHADVNDMAMELLNEPKRIA---IGVGSEE--HKDITQHFYLCD 228
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
D +L + + ++ +IFT T RL L + +K+ L+ L Q R I
Sbjct: 229 HLDHKEALLDRILADAEYRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTI 288
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
+ +F +F L+ TD RG+D V
Sbjct: 289 MGQFERAVFKILVTTDVAS---------------------------------RGLDIPAV 315
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
VINF+MP++ YVHR+GRTGRA N G ++SLV P + + F+ +++F+
Sbjct: 316 THVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKRVEAFL 365
>gi|255746112|ref|ZP_05420059.1| ATP-dependent RNA helicase [Vibrio cholera CIRS 101]
gi|379743512|ref|YP_005334564.1| DEAD/DEAH box helicase [Vibrio cholerae IEC224]
gi|417812108|ref|ZP_12458769.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-49A2]
gi|417816592|ref|ZP_12463222.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HCUF01]
gi|418329967|ref|ZP_12941001.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-06A1]
gi|418337492|ref|ZP_12946387.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-23A1]
gi|418339496|ref|ZP_12948384.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-28A1]
gi|418349164|ref|ZP_12953896.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-43A1]
gi|418353493|ref|ZP_12956218.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-61A1]
gi|419824103|ref|ZP_14347632.1| type III restriction enzyme, res subunit [Vibrio cholerae
CP1033(6)]
gi|421317465|ref|ZP_15768035.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1032(5)]
gi|421319832|ref|ZP_15770390.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1038(11)]
gi|421323874|ref|ZP_15774401.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1041(14)]
gi|421326846|ref|ZP_15777364.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1042(15)]
gi|421331933|ref|ZP_15782412.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1046(19)]
gi|421335566|ref|ZP_15786029.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1048(21)]
gi|421341045|ref|ZP_15791475.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-20A2]
gi|421346143|ref|ZP_15796527.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-46A1]
gi|422885236|ref|ZP_16931676.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-40A1]
gi|422897947|ref|ZP_16935367.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-48A1]
gi|422904104|ref|ZP_16939056.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-70A1]
gi|422915379|ref|ZP_16949828.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HFU-02]
gi|422927002|ref|ZP_16960007.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-38A1]
gi|423146342|ref|ZP_17133910.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-19A1]
gi|423148103|ref|ZP_17135481.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-21A1]
gi|423151889|ref|ZP_17139120.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-22A1]
gi|423158512|ref|ZP_17145525.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-32A1]
gi|423162318|ref|ZP_17149190.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-33A2]
gi|423162512|ref|ZP_17149378.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-48B2]
gi|423732334|ref|ZP_17705631.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-17A1]
gi|423736970|ref|ZP_17710083.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-50A2]
gi|423900595|ref|ZP_17727953.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-62A1]
gi|423912137|ref|ZP_17728653.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-77A1]
gi|423999963|ref|ZP_17743120.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-17A2]
gi|424004595|ref|ZP_17747600.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-37A1]
gi|424021755|ref|ZP_17761464.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-62B1]
gi|424028405|ref|ZP_17768002.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-69A1]
gi|424587691|ref|ZP_18027263.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1030(3)]
gi|424592502|ref|ZP_18031917.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1040(13)]
gi|424596365|ref|ZP_18035672.1| DEAD/DEAH box helicase family protein [Vibrio Cholerae CP1044(17)]
gi|424603218|ref|ZP_18042352.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1047(20)]
gi|424605050|ref|ZP_18044037.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1050(23)]
gi|424607955|ref|ZP_18046889.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-39A1]
gi|424614595|ref|ZP_18053375.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-41A1]
gi|424617080|ref|ZP_18055765.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-42A1]
gi|424620976|ref|ZP_18059505.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-47A1]
gi|424643045|ref|ZP_18080823.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-56A2]
gi|424650110|ref|ZP_18087713.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-57A2]
gi|424654942|ref|ZP_18092260.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-81A2]
gi|440711200|ref|ZP_20891841.1| ATP-dependent RNA helicase [Vibrio cholerae 4260B]
gi|443505138|ref|ZP_21072079.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-64A1]
gi|443509037|ref|ZP_21075787.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-65A1]
gi|443512881|ref|ZP_21079504.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-67A1]
gi|443516427|ref|ZP_21082927.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-68A1]
gi|443521128|ref|ZP_21087458.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-71A1]
gi|443521288|ref|ZP_21087610.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-72A2]
gi|443530060|ref|ZP_21096077.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-7A1]
gi|443532710|ref|ZP_21098713.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-80A1]
gi|443537425|ref|ZP_21103283.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-81A1]
gi|449057513|ref|ZP_21735809.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae O1
str. Inaba G4222]
gi|255735866|gb|EET91264.1| ATP-dependent RNA helicase [Vibrio cholera CIRS 101]
gi|340039742|gb|EGR00715.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HCUF01]
gi|340044928|gb|EGR05876.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-49A2]
gi|341630148|gb|EGS55251.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-70A1]
gi|341631063|gb|EGS56004.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-40A1]
gi|341631145|gb|EGS56085.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-48A1]
gi|341631868|gb|EGS56744.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HFU-02]
gi|341645163|gb|EGS69319.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-38A1]
gi|356421245|gb|EHH74748.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-19A1]
gi|356424235|gb|EHH77650.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-21A1]
gi|356426474|gb|EHH79782.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-06A1]
gi|356430876|gb|EHH84081.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-23A1]
gi|356434972|gb|EHH88132.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-32A1]
gi|356436438|gb|EHH89552.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-22A1]
gi|356440415|gb|EHH93356.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-33A2]
gi|356442896|gb|EHH95729.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-28A1]
gi|356446026|gb|EHH98826.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-43A1]
gi|356454558|gb|EHI07205.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-61A1]
gi|356457721|gb|EHI10228.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-48B2]
gi|378796106|gb|AFC59576.1| DEAD-box ATP dependent DNA helicase [Vibrio cholerae IEC224]
gi|395919923|gb|EJH30746.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1032(5)]
gi|395921888|gb|EJH32707.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1041(14)]
gi|395924720|gb|EJH35522.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1038(11)]
gi|395930731|gb|EJH41477.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1046(19)]
gi|395933771|gb|EJH44510.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1042(15)]
gi|395935248|gb|EJH45983.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1048(21)]
gi|395938529|gb|EJH49221.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-20A2]
gi|395947670|gb|EJH58325.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-46A1]
gi|395964480|gb|EJH74697.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-42A1]
gi|395966299|gb|EJH76426.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-56A2]
gi|395969264|gb|EJH79151.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-57A2]
gi|395971531|gb|EJH81191.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1030(3)]
gi|395973180|gb|EJH82750.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1047(20)]
gi|395975243|gb|EJH84739.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-47A1]
gi|408009787|gb|EKG47680.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-41A1]
gi|408015832|gb|EKG53403.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-39A1]
gi|408043109|gb|EKG79130.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1040(13)]
gi|408048059|gb|EKG83530.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1050(23)]
gi|408049868|gb|EKG85056.1| DEAD/DEAH box helicase family protein [Vibrio Cholerae CP1044(17)]
gi|408058764|gb|EKG93549.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-81A2]
gi|408613766|gb|EKK87052.1| type III restriction enzyme, res subunit [Vibrio cholerae
CP1033(6)]
gi|408620833|gb|EKK93837.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-17A1]
gi|408652049|gb|EKL23284.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-50A2]
gi|408653032|gb|EKL24209.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-62A1]
gi|408664208|gb|EKL35047.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-77A1]
gi|408850649|gb|EKL90598.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-37A1]
gi|408854712|gb|EKL94460.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-17A2]
gi|408877912|gb|EKM16937.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-69A1]
gi|408880777|gb|EKM19695.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-62B1]
gi|439972687|gb|ELP48930.1| ATP-dependent RNA helicase [Vibrio cholerae 4260B]
gi|443430436|gb|ELS73005.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-64A1]
gi|443434274|gb|ELS80431.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-65A1]
gi|443438068|gb|ELS87798.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-67A1]
gi|443442178|gb|ELS95491.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-68A1]
gi|443445157|gb|ELT01879.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-71A1]
gi|443452611|gb|ELT12793.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-72A2]
gi|443459630|gb|ELT27024.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-7A1]
gi|443464056|gb|ELT35004.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-80A1]
gi|443467434|gb|ELT42090.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-81A1]
gi|448263232|gb|EMB00479.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae O1
str. Inaba G4222]
Length = 448
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 133/410 (32%), Positives = 210/410 (51%), Gaps = 49/410 (11%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F++LGLD RL+ L ++ T IQQ +IPL + G+D++A +KTGSGKT A++LP+LH+
Sbjct: 3 FKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHK 62
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+ +K P L+LVPTREL +QVY E+ +++ G + +T +D
Sbjct: 63 SLKTKAFSAK-DPRGLILVPTRELAKQVYGELRSML----GGLSYTATLITGGENFNDQV 117
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL-S 206
ALA P ++ATPG + L L F + L+ LVLDEAD +L G+ +L+ + +
Sbjct: 118 KALARGPRFIVATPGRLADHLDHRSL----FLEGLETLVLDEADRMLDLGFAKELRRIHN 173
Query: 207 AVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
A R Q L+ SAT +DV+ + +L+ P + +G +E K++ Q + C
Sbjct: 174 AAKHRRRQTLMFSATLDHADVNDMAMELLNEPKRIA---IGVGSEE--HKDITQHFYLCD 228
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
D +L + + ++ +IFT T RL L + +K+ L+ L Q R I
Sbjct: 229 HLDHKEALLDRILADAEYRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTI 288
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
+ +F +F L+ TD RG+D V
Sbjct: 289 MGQFERAVFKILVTTDVAS---------------------------------RGLDIPAV 315
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
VINF+MP++ YVHR+GRTGRA N G ++SLV P + + F+ +++F+
Sbjct: 316 THVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKRVEAFL 365
>gi|394988591|ref|ZP_10381426.1| hypothetical protein SCD_00993 [Sulfuricella denitrificans skB26]
gi|393791970|dbj|GAB71065.1| hypothetical protein SCD_00993 [Sulfuricella denitrificans skB26]
Length = 476
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 138/412 (33%), Positives = 205/412 (49%), Gaps = 50/412 (12%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SFE LGL L+ A+ +G +PT IQ +IP++LEG+D++ A+TG+GKT + LPLL
Sbjct: 2 SFENLGLSAELLRAVTDQGYTEPTPIQAQAIPVVLEGRDLMGGAQTGTGKTAGFTLPLLQ 61
Query: 87 RL---FNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPA 143
L N S+ +K AL+L PTREL QV V + + LK + +
Sbjct: 62 LLSIHANTSTSPAKHPVRALILTPTRELAAQVEESV----QTYGKYLPLKSTVVFGGVNI 117
Query: 144 SDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLK 203
+ AAL G +I++ATPG L V Q ++ILVLDEAD +L G+ D+K
Sbjct: 118 KEQIAALKGGVEILVATPG----RLLDHVEQKTVNLSKVEILVLDEADRMLDMGFLPDIK 173
Query: 204 ALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWIS 263
+ A++P Q LL SAT + ++ KL +L +P ++ + + +NV Q
Sbjct: 174 RIIALLPAKRQNLLFSATFAGEIKKLSDQLLTDPVLIEV-----ARRNAASENVTQVIYP 228
Query: 264 CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
K + L+K E +Q + L+F+ T A RL LEK GI + ++ + Q R
Sbjct: 229 VDHERKRELLAHLIKSENLQ-QVLVFSRTKHGASRLAQQLEKDGISATAIHGDKSQQQRT 287
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
L EF G L+ATD RG+D
Sbjct: 288 QALAEFKDGTVRVLVATDV---------------------------------AARGLDID 314
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ V+NF++P YVHRIGRTGRA ++G ++SLV DE+++ EI+S +
Sbjct: 315 QLPHVVNFDLPNAPEDYVHRIGRTGRAGSSGEAISLVCADELRMLAEIESML 366
>gi|451812388|ref|YP_007448842.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
galatii TCC219]
gi|451778290|gb|AGF49238.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
galatii TCC219]
Length = 444
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 138/405 (34%), Positives = 202/405 (49%), Gaps = 56/405 (13%)
Query: 26 KSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLL 85
SF GLD ++ L++ G KPTLIQ+++IP IL G D + A+TG+GKT A++LP++
Sbjct: 14 NSFRSFGLDNSILRVLDEIGYIKPTLIQESAIPNILSGSDFIGAAQTGTGKTAAFVLPII 73
Query: 86 HRLF----NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSM 141
+RL N SP L +L+LVPTREL QVY ++L +L+ + L +
Sbjct: 74 NRLIPFANNSVSPARHLL-RSLILVPTRELADQVYE----CVKLYSKNTELRSLVLFGGV 128
Query: 142 PASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDD 201
+ L +I+IATPG + +S Q ++ ILVLDEAD +L G+ D
Sbjct: 129 DLEQQKVLLHRGCEILIATPGRLIAHMS----QKNVSLINVDILVLDEADRMLDMGFMPD 184
Query: 202 LKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPY--ILTLPEVGDVKDEVIPKNVQQ 259
+ + ++PR Q LL SAT + DV KL L NP +T+P I V+Q
Sbjct: 185 VDRIVGMLPRKRQSLLFSATFNEDVRKLVLTYLKNPVEADVTVP-------NSIADTVKQ 237
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+ DK IL L+ + K A++FTNT +L +L +++ ++ + Q
Sbjct: 238 ISYKIANNDKYAAILFLIH-SVKMKHAIVFTNTKIATNKLASYLISNNVRADSIHGDKNQ 296
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
R+ IL +F G D L+ATD V RG
Sbjct: 297 KERIRILNDFKLGELDILVATD---------------------------------VVARG 323
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE 424
+D + VINF++P N YVHRIGRTGRA G+++SL P+E
Sbjct: 324 LDIACISCVINFDIPHNPEDYVHRIGRTGRANKEGSAISLYYPEE 368
>gi|417818816|ref|ZP_12465436.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE39]
gi|423938872|ref|ZP_17732357.1| type III restriction enzyme, res subunit [Vibrio cholerae HE-40]
gi|423968690|ref|ZP_17735907.1| type III restriction enzyme, res subunit [Vibrio cholerae HE-46]
gi|340043530|gb|EGR04488.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE39]
gi|408664653|gb|EKL35483.1| type III restriction enzyme, res subunit [Vibrio cholerae HE-40]
gi|408667254|gb|EKL38004.1| type III restriction enzyme, res subunit [Vibrio cholerae HE-46]
Length = 448
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 133/410 (32%), Positives = 210/410 (51%), Gaps = 49/410 (11%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F++LGLD RL+ L ++ T IQQ +IPL + G+D++A +KTGSGKT A++LP+LH+
Sbjct: 3 FKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHK 62
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+ +K P L+LVPTREL +QVY E+ +++ G + +T +D
Sbjct: 63 SLKTKAFSAK-DPRGLILVPTRELAKQVYGELRSML----GGLSYTATLITGGENFNDQV 117
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL-S 206
ALA P ++ATPG + L L F + L+ LVLDEAD +L G+ +L+ + +
Sbjct: 118 KALARGPRFIVATPGRLADHLDHRSL----FLEGLETLVLDEADRMLDLGFAKELRRIHN 173
Query: 207 AVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
A R Q L+ SAT +DV+ + +L+ P + +G +E K++ Q + C
Sbjct: 174 AAKHRRRQTLMFSATLDHADVNDMAMELLNEPKRIA---IGVGSEE--HKDITQHFYLCD 228
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
D +L + + ++ +IFT T RL L + +K+ L+ L Q R I
Sbjct: 229 HLDHKEALLDRILADAEYRQVIIFTATRADTDRLTEKLNQSNLKAVALSGNLNQTQRNTI 288
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
+ +F +F L+ TD RG+D V
Sbjct: 289 MGQFERAVFKILVTTDVAS---------------------------------RGLDIPAV 315
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
VINF+MP++ YVHR+GRTGRA N G ++SLV P + + F+ +++F+
Sbjct: 316 THVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKRVEAFL 365
>gi|421467479|ref|ZP_15916098.1| DEAD/DEAH box helicase [Burkholderia multivorans ATCC BAA-247]
gi|400233671|gb|EJO63196.1| DEAD/DEAH box helicase [Burkholderia multivorans ATCC BAA-247]
Length = 487
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 134/416 (32%), Positives = 212/416 (50%), Gaps = 54/416 (12%)
Query: 25 EKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPL 84
+ +F++ GL ++ A+ ++G PT IQ +IP++L G+DV+ A+TG+GKT ++ LP+
Sbjct: 10 DATFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPI 69
Query: 85 LHRLF---NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELC--KGQVQLKVVQLTS 139
+ RL N S+ ++ AL+L PTREL QV + V A + + V V +
Sbjct: 70 IQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNP 129
Query: 140 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE 199
M ++LR + +I+IATPG L V Q + ++ILVLDEAD +L G+
Sbjct: 130 QM--AELRRGV----EILIATPG----RLLDHVQQKTANLGQVQILVLDEADRMLDMGFL 179
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
DL+ + ++P+ Q LL SAT S ++ KL L NP + + + NV Q
Sbjct: 180 PDLQRILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEV-----ARSNSTNANVTQ 234
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+E DK ++ LL+ + K+ ++F N+ A RL LE+ G+ ++ ++ + Q
Sbjct: 235 IVYDVAEGDKQAAVVQLLR-DRGLKQVIVFCNSKIGASRLARQLERDGVVASAIHGDKSQ 293
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
R+ L+ F G + L+ATD RG
Sbjct: 294 LERMQALDAFKRGEIEALVATDVA---------------------------------ARG 320
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+D + VINF++P NA YVHRIGRTGRA TG ++SL SP+E K +I+ +
Sbjct: 321 LDIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQLADIEKLI 376
>gi|336469774|gb|EGO57936.1| hypothetical protein NEUTE1DRAFT_81992 [Neurospora tetrasperma FGSC
2508]
Length = 830
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 139/429 (32%), Positives = 213/429 (49%), Gaps = 52/429 (12%)
Query: 24 EEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLP 83
E SF+E+ L ++ L G KPT IQ +IP+ L GKDVV A TGSGKT A+++P
Sbjct: 292 EMASFQEMSLSRPILRGLTSVGFTKPTPIQAKTIPISLMGKDVVGGAVTGSGKTAAFVVP 351
Query: 84 LLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPA 143
+L RL PK ++L PTREL Q ++ + L + L V L+ +
Sbjct: 352 ILERLLYR--PKKVPTTRVVILTPTRELAIQCHAVAVKLASHTDIKFCLAVGGLSLKVQE 409
Query: 144 SDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDL 202
++LR PD+VIATPG + S SF+ D+++ILVLDEAD +L G+ D+L
Sbjct: 410 AELRLR----PDVVIATPGRFIDHMRN----SASFAVDTIEILVLDEADRMLEDGFADEL 461
Query: 203 KALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-- 260
+ +P+ Q +L SAT +S VD+L + L+ P + + D + + VQ+F
Sbjct: 462 NEILTTLPKSRQTMLFSATMTSSVDRLIRAGLNKPVRI----MADSQKKTAGTLVQEFVR 517
Query: 261 WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 320
E + Y+L + K + ++ +IF +A ++++ FG+ A L+ + Q
Sbjct: 518 LRPGRESKREGYLLHICKT-IYTERVIIFFRQKKIAHKMRIIFGLFGLSCAELHGSMNQA 576
Query: 321 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 380
R+ +E+F G ++L+ATD L S RG+
Sbjct: 577 QRIQSVEDFRDGKVNFLLATD----------------------------LAS-----RGL 603
Query: 381 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS-PDEMKIFEEIKSFVGDDE 439
D K V TVIN+E PQ YVHR+GRT RA +G +++L + PD + +K+
Sbjct: 604 DIKGVDTVINYEAPQTPEIYVHRVGRTARAGRSGTAITLAAEPDRKVVKAAVKAGKSQGA 663
Query: 440 NEDSNIIAP 448
S II P
Sbjct: 664 KISSRIIDP 672
>gi|15600832|ref|NP_232462.1| DEAD/DEAH box helicase [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|153823246|ref|ZP_01975913.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae B33]
gi|227811688|ref|YP_002811698.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae M66-2]
gi|229506763|ref|ZP_04396272.1| ATP-dependent RNA helicase [Vibrio cholerae BX 330286]
gi|229510442|ref|ZP_04399922.1| ATP-dependent RNA helicase [Vibrio cholerae B33]
gi|229517427|ref|ZP_04406872.1| ATP-dependent RNA helicase [Vibrio cholerae RC9]
gi|229605237|ref|YP_002875941.1| ATP-dependent RNA helicase [Vibrio cholerae MJ-1236]
gi|254850327|ref|ZP_05239677.1| ATP-dependent RNA helicase [Vibrio cholerae MO10]
gi|298499926|ref|ZP_07009732.1| DEAD-box ATP dependent DNA helicase [Vibrio cholerae MAK 757]
gi|360038066|ref|YP_004939828.1| DEAD-box ATP dependent DNA helicase [Vibrio cholerae O1 str.
2010EL-1786]
gi|9657444|gb|AAF95975.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae O1
biovar El Tor str. N16961]
gi|126519233|gb|EAZ76456.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae B33]
gi|227010830|gb|ACP07041.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae M66-2]
gi|229345463|gb|EEO10436.1| ATP-dependent RNA helicase [Vibrio cholerae RC9]
gi|229352887|gb|EEO17827.1| ATP-dependent RNA helicase [Vibrio cholerae B33]
gi|229357114|gb|EEO22032.1| ATP-dependent RNA helicase [Vibrio cholerae BX 330286]
gi|229371723|gb|ACQ62145.1| ATP-dependent RNA helicase [Vibrio cholerae MJ-1236]
gi|254846032|gb|EET24446.1| ATP-dependent RNA helicase [Vibrio cholerae MO10]
gi|297541907|gb|EFH77958.1| DEAD-box ATP dependent DNA helicase [Vibrio cholerae MAK 757]
gi|356649220|gb|AET29274.1| DEAD-box ATP dependent DNA helicase [Vibrio cholerae O1 str.
2010EL-1786]
Length = 452
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 134/415 (32%), Positives = 211/415 (50%), Gaps = 49/415 (11%)
Query: 23 EEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLL 82
E F++LGLD RL+ L ++ T IQQ +IPL + G+D++A +KTGSGKT A++L
Sbjct: 2 ESTLQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVL 61
Query: 83 PLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMP 142
P+LH+ + +K P L+LVPTREL +QVY E+ +++ G + +T
Sbjct: 62 PMLHKSLKTKAFSAK-DPRGLILVPTRELAKQVYGELRSML----GGLSYTATLITGGEN 116
Query: 143 ASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 202
+D ALA P ++ATPG + L L F + L+ LVLDEAD +L G+ +L
Sbjct: 117 FNDQVKALARGPRFIVATPGRLADHLDHRSL----FLEGLETLVLDEADRMLDLGFAKEL 172
Query: 203 KAL-SAVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF 260
+ + +A R Q L+ SAT +DV+ + +L+ P + +G +E K++ Q
Sbjct: 173 RRIHNAAKHRRRQTLMFSATLDHADVNDMAMELLNEPKRIA---IGVGSEE--HKDITQH 227
Query: 261 WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 320
+ C D +L + + ++ +IFT T RL L + +K+ L+ L Q
Sbjct: 228 FYLCDHLDHKEALLDRILADAEYRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQT 287
Query: 321 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 380
R I+ +F +F L+ TD RG+
Sbjct: 288 QRNTIMGQFERAVFKILVTTDVAS---------------------------------RGL 314
Query: 381 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
D V VINF+MP++ YVHR+GRTGRA N G ++SLV P + + F+ +++F+
Sbjct: 315 DIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKRVEAFL 369
>gi|421355390|ref|ZP_15805721.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-45]
gi|395950060|gb|EJH60679.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-45]
Length = 448
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 133/410 (32%), Positives = 210/410 (51%), Gaps = 49/410 (11%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F++LGLD RL+ L ++ T IQQ +IPL + G+D++A +KTGSGKT A++LP+LH+
Sbjct: 3 FKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHK 62
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+ +K P L+LVPTREL +QVY E+ +++ G + +T +D
Sbjct: 63 SLKTKAFSAK-DPRGLILVPTRELAKQVYGELRSML----GGLSYTATLITGGENFNDQV 117
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL-S 206
ALA P ++ATPG + L L F + L+ LVLDEAD +L G+ +L+ + +
Sbjct: 118 KALARGPRFIVATPGRLADHLDHRSL----FLEGLETLVLDEADRMLDLGFAKELRRIHN 173
Query: 207 AVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
A R Q L+ SAT +DV+ + +L+ P + +G +E K++ Q + C
Sbjct: 174 AAKHRRRQTLMFSATLDHADVNDMAMELLNEPKRIA---IGVGSEE--HKDITQHFYLCD 228
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
D +L + + ++ +IFT T RL L + +K+ L+ L Q R I
Sbjct: 229 HLDHKEALLDRILADAEYRQVIIFTATRADTDRLTEKLNQSNLKAVALSGNLNQTQRNTI 288
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
+ +F +F L+ TD RG+D V
Sbjct: 289 MGQFERAVFKILVTTDVAS---------------------------------RGLDIPAV 315
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
VINF+MP++ YVHR+GRTGRA N G ++SLV P + + F+ +++F+
Sbjct: 316 THVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKRVEAFL 365
>gi|153831249|ref|ZP_01983916.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae
623-39]
gi|229522732|ref|ZP_04412148.1| ATP-dependent RNA helicase [Vibrio cholerae TM 11079-80]
gi|229527951|ref|ZP_04417342.1| ATP-dependent RNA helicase [Vibrio cholerae 12129(1)]
gi|297579800|ref|ZP_06941727.1| DEAD-box ATP dependent DNA helicase [Vibrio cholerae RC385]
gi|148873269|gb|EDL71404.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae
623-39]
gi|229334313|gb|EEN99798.1| ATP-dependent RNA helicase [Vibrio cholerae 12129(1)]
gi|229340717|gb|EEO05723.1| ATP-dependent RNA helicase [Vibrio cholerae TM 11079-80]
gi|297535446|gb|EFH74280.1| DEAD-box ATP dependent DNA helicase [Vibrio cholerae RC385]
Length = 452
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 134/415 (32%), Positives = 211/415 (50%), Gaps = 49/415 (11%)
Query: 23 EEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLL 82
E F++LGLD RL+ L ++ T IQQ +IPL + G+D++A +KTGSGKT A++L
Sbjct: 2 ESTLQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVL 61
Query: 83 PLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMP 142
P+LH+ + +K P L+LVPTREL +QVY E+ +++ G + +T
Sbjct: 62 PMLHKSLKTKAFSAK-DPRGLILVPTRELAKQVYGELRSML----GGLSYTATLITGGEN 116
Query: 143 ASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 202
+D ALA P ++ATPG + L L F + L+ LVLDEAD +L G+ +L
Sbjct: 117 FNDQVKALARGPRFIVATPGRLADHLDHRSL----FLEGLETLVLDEADRMLDLGFAKEL 172
Query: 203 KAL-SAVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF 260
+ + +A R Q L+ SAT +DV+ + +L+ P + +G +E K++ Q
Sbjct: 173 RRIHNAAKHRRRQTLMFSATLDHADVNDMAMELLNEPKRIA---IGVGSEE--HKDITQH 227
Query: 261 WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 320
+ C D +L + + ++ +IFT T RL L + +K+ L+ L Q
Sbjct: 228 FYLCDHLDHKEALLDRILADAEYRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQT 287
Query: 321 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 380
R I+ +F +F L+ TD RG+
Sbjct: 288 QRNTIMGQFERAVFKILVTTDVAS---------------------------------RGL 314
Query: 381 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
D V VINF+MP++ YVHR+GRTGRA N G ++SLV P + + F+ +++F+
Sbjct: 315 DIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKRVEAFL 369
>gi|402221947|gb|EJU02015.1| DEAD-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 809
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 133/415 (32%), Positives = 207/415 (49%), Gaps = 49/415 (11%)
Query: 20 AEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFA 79
A + + +F+ + L L+ AL G +KPT IQ A+IP+ L GKDVV A TGSGKT A
Sbjct: 213 ATSTSDVTFQSMNLSRPLLKALANLGFEKPTPIQAAAIPVALLGKDVVGGAVTGSGKTAA 272
Query: 80 YLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTS 139
+++P+L RL K+ ++L PTREL Q ++ + + L V L+
Sbjct: 273 FVIPILERLLFRDRGKAAATTRVVILCPTRELAVQCHAVATRIGSFTDVRFSLVVGGLSL 332
Query: 140 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGY 198
++LR PD+VIATPG + L S SFS D L +L++DEAD +L G+
Sbjct: 333 KGQEAELRTR----PDVVIATPGRLIDHLRN----SPSFSLDMLDVLIMDEADRMLEEGF 384
Query: 199 EDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ 258
+L + + P+ Q +L SAT + VD+L ++ L+ P L + D + Q
Sbjct: 385 AAELGEIISACPKQRQTMLFSATMTDSVDELIRMGLNKPVRLFV----DPRKSTASGLTQ 440
Query: 259 QFWISCSER--DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAE 316
+F R D+ ++TL K + + +IF + A ++++ G+K+ L+
Sbjct: 441 EFVRVRDNREDDRPALLMTLCK-RTFRTRCIIFFRSKAFAHQMRIVFGLLGMKAGELHGN 499
Query: 317 LPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGV 376
L Q RL L++F G D+L+ATD L S
Sbjct: 500 LTQEQRLRALQQFKDGDVDFLLATD----------------------------LAS---- 527
Query: 377 VRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 431
RG+D + + TVIN++MP A Y+HR+GRT RA + G SV+LV + K+ + +
Sbjct: 528 -RGLDIRGIETVINYDMPGQIAQYLHRVGRTARAGSKGRSVTLVGEADRKMLKAV 581
>gi|390953372|ref|YP_006417130.1| DNA/RNA helicase [Aequorivita sublithincola DSM 14238]
gi|390419358|gb|AFL80115.1| DNA/RNA helicase, superfamily II [Aequorivita sublithincola DSM
14238]
Length = 423
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 148/416 (35%), Positives = 209/416 (50%), Gaps = 58/416 (13%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF+ LGL L+ A++KKG + P+ IQ+ +IPLILE KDV+A A+TGSGKT + LP+L
Sbjct: 2 SFKSLGLSDALLQAISKKGYETPSAIQKKAIPLILERKDVLASAQTGSGKTAGFALPMLQ 61
Query: 87 RLFNESSPKSKLAPA-ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASD 145
L S P + P AL+L PTREL QV E E L+ + + A+
Sbjct: 62 IL--NSEPAFRKRPVRALILTPTRELAAQVEDEFREYSEFT----DLRSTVIFGGVGANP 115
Query: 146 LRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL 205
AL DI++ATPG + + L S S ++ILVLDEAD +L G+ D+K +
Sbjct: 116 QIKALRNGVDILVATPGRLLDLENQNAL---SLS-KVEILVLDEADRMLDMGFLRDIKKI 171
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN--VQQFWIS 263
A++P Q LL SAT S ++ KL LH+P ++ E P+N V++ +
Sbjct: 172 LALLPNKRQNLLFSATFSKEIKKLANEFLHHPVLV----------EATPENTTVEKIDQT 221
Query: 264 CSERDKLLYILTLLKL--ELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 321
DK ++KL E ++ L+FT T A RL LEK I SA ++ Q +
Sbjct: 222 VYRVDKAQKTDLIIKLISEGNWQQVLVFTRTKHGANRLSEKLEKAKITSAAIHGNKSQGA 281
Query: 322 RLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGID 381
R L F G L+ATD RG+D
Sbjct: 282 RTRALSGFKEGKVRVLVATDI---------------------------------AARGLD 308
Query: 382 FKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
+ VINFE+P + YVHRIGRTGRA +G ++SLVS DE+ ++I+ +G+
Sbjct: 309 IPLLPHVINFELPNISEDYVHRIGRTGRAGASGEALSLVSLDEVGYLKDIEKLIGE 364
>gi|297691246|ref|XP_002823001.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Pongo abelii]
Length = 455
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 133/424 (31%), Positives = 217/424 (51%), Gaps = 53/424 (12%)
Query: 14 QAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTG 73
+A + E EE K+F++LG+ L A ++ G KPT IQ +IPL L+G+D++ A+TG
Sbjct: 12 EASQPIVEEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETG 71
Query: 74 SGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLK 133
SGKT A+ LP+L+ L +P+ ALVL PTREL Q+ + AL + ++
Sbjct: 72 SGKTGAFALPILNALLE--TPQRLF---ALVLTPTRELAFQISEQFEAL----GSSIGVQ 122
Query: 134 VVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADL 192
+ + + ALA P I+IATPG + L +K F+ +LK LV+DEAD
Sbjct: 123 SAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLE----NTKGFNLRALKYLVMDEADR 178
Query: 193 LLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEV 252
+L+ +E ++ + VIPR + L SAT + V KL++ L NP + K +
Sbjct: 179 ILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQT 234
Query: 253 IPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAI 312
+ K +QQ++I + K Y++ +L EL +IF +T + R L L G +
Sbjct: 235 VEK-LQQYYIFIPSKFKDTYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIP 292
Query: 313 LNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDS 372
L+ ++ Q+ RL L +F A L+ATD
Sbjct: 293 LHGQMSQSKRLGSLNKFKAKARSILLATDVAS---------------------------- 324
Query: 373 EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432
RG+D +V V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+
Sbjct: 325 -----RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIE 379
Query: 433 SFVG 436
+G
Sbjct: 380 HLIG 383
>gi|39644716|gb|AAH09379.2| DDX47 protein, partial [Homo sapiens]
Length = 450
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 133/424 (31%), Positives = 217/424 (51%), Gaps = 53/424 (12%)
Query: 14 QAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTG 73
+A + E EE K+F++LG+ L A ++ G KPT IQ +IPL L+G+D++ A+TG
Sbjct: 7 EASQPIVEEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETG 66
Query: 74 SGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLK 133
SGKT A+ LP+L+ L +P+ ALVL PTREL Q+ + AL + ++
Sbjct: 67 SGKTGAFALPILNALLE--TPQRLF---ALVLTPTRELAFQISEQFEAL----GSSIGVQ 117
Query: 134 VVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADL 192
+ + + ALA P I+IATPG + L +K F+ +LK LV+DEAD
Sbjct: 118 SAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLE----NTKGFNLRALKYLVMDEADR 173
Query: 193 LLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEV 252
+L+ +E ++ + VIPR + L SAT + V KL++ L NP + K +
Sbjct: 174 ILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQT 229
Query: 253 IPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAI 312
+ K +QQ++I + K Y++ +L EL +IF +T + R L L G +
Sbjct: 230 VEK-LQQYYIFIPSKFKDTYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIP 287
Query: 313 LNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDS 372
L+ ++ Q+ RL L +F A L+ATD
Sbjct: 288 LHGQMSQSKRLGSLNKFKAKARSILLATDVAS---------------------------- 319
Query: 373 EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432
RG+D +V V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+
Sbjct: 320 -----RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIE 374
Query: 433 SFVG 436
+G
Sbjct: 375 HLIG 378
>gi|328869268|gb|EGG17646.1| putative RNA helicase [Dictyostelium fasciculatum]
Length = 860
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 148/478 (30%), Positives = 228/478 (47%), Gaps = 63/478 (13%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
+FEEL L L A+ K G +PT IQ +IPLIL GKD++A A TGSGKT A++LP+L
Sbjct: 235 TFEELHLSRPLQKAVAKLGYTQPTPIQAKAIPLILNGKDILASATTGSGKTAAFILPILE 294
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
RL + + L+++PTREL Q +S +L + Q L V L++ + +L
Sbjct: 295 RLLYRDA--THRVSRVLIVLPTRELALQCHSVFESLAQFTNVQSCLVVGGLSNKVQEHEL 352
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKAL 205
R PD++IATPG + L L + + ++ILVLDEAD LL G++D+L +
Sbjct: 353 RKR----PDVIIATPGRLIDHL----LNAHDVGLEDIEILVLDEADRLLDMGFKDELNRV 404
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
P G Q LL SAT S DV L KL L P + + + V ++Q +I
Sbjct: 405 VESCPDGRQTLLFSATLSDDVKLLAKLSLSQPVRVAVDALFQV-----ASTLEQEFIKIK 459
Query: 266 E---RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 322
D+ +L+L ++F + R+ + L G+K L+ +L Q R
Sbjct: 460 PGQLADRTAMLLSLCTRVFNGGGCIVFFRSKKEVHRIAILLGLSGLKVGELHGDLNQEQR 519
Query: 323 LHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDF 382
L+ F G D+L+ATD RG+D
Sbjct: 520 FEALQSFRNGEVDFLLATDIA---------------------------------ARGLDV 546
Query: 383 KNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENED 442
V TVIN+ MP++ A Y+HR+GRT RA G S S ++ + KI ++I S
Sbjct: 547 LGVRTVINYNMPRSLAQYIHRVGRTARAGLAGRSCSFITEADRKILKDIVS--------R 598
Query: 443 SNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLR---NEILNSEKLKAH 497
+ A +AQ +++ R + +++ V I E R D + +++ +E++ A+
Sbjct: 599 AKTKAKSRTVAQESIKLWRAKIDEMTDDVKDIIREELRELDFKKTEKDLMKAERIVAN 656
>gi|20149629|ref|NP_057439.2| probable ATP-dependent RNA helicase DDX47 isoform 1 [Homo sapiens]
gi|52782792|sp|Q9H0S4.1|DDX47_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX47; AltName:
Full=DEAD box protein 47
gi|12052856|emb|CAB66601.1| hypothetical protein [Homo sapiens]
gi|45786091|gb|AAH68009.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Homo sapiens]
gi|117645464|emb|CAL38198.1| hypothetical protein [synthetic construct]
gi|119616683|gb|EAW96277.1| hCG2044052 [Homo sapiens]
gi|119616687|gb|EAW96281.1| hCG27698, isoform CRA_a [Homo sapiens]
gi|193785403|dbj|BAG54556.1| unnamed protein product [Homo sapiens]
Length = 455
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 133/424 (31%), Positives = 217/424 (51%), Gaps = 53/424 (12%)
Query: 14 QAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTG 73
+A + E EE K+F++LG+ L A ++ G KPT IQ +IPL L+G+D++ A+TG
Sbjct: 12 EASQPIVEEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETG 71
Query: 74 SGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLK 133
SGKT A+ LP+L+ L +P+ ALVL PTREL Q+ + AL + ++
Sbjct: 72 SGKTGAFALPILNALLE--TPQRLF---ALVLTPTRELAFQISEQFEAL----GSSIGVQ 122
Query: 134 VVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADL 192
+ + + ALA P I+IATPG + L +K F+ +LK LV+DEAD
Sbjct: 123 SAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLE----NTKGFNLRALKYLVMDEADR 178
Query: 193 LLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEV 252
+L+ +E ++ + VIPR + L SAT + V KL++ L NP + K +
Sbjct: 179 ILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQT 234
Query: 253 IPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAI 312
+ K +QQ++I + K Y++ +L EL +IF +T + R L L G +
Sbjct: 235 VEK-LQQYYIFIPSKFKDTYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIP 292
Query: 313 LNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDS 372
L+ ++ Q+ RL L +F A L+ATD
Sbjct: 293 LHGQMSQSKRLGSLNKFKAKARSILLATDVAS---------------------------- 324
Query: 373 EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432
RG+D +V V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+
Sbjct: 325 -----RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIE 379
Query: 433 SFVG 436
+G
Sbjct: 380 HLIG 383
>gi|348030348|ref|YP_004873034.1| DEAD/DEAH box helicase [Glaciecola nitratireducens FR1064]
gi|347947691|gb|AEP31041.1| DEAD box helicase [Glaciecola nitratireducens FR1064]
Length = 421
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 146/424 (34%), Positives = 215/424 (50%), Gaps = 74/424 (17%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF+ LGL ++ A+ +KG ++P+ IQ+ IP++LEGKD++A A+TG+GKT A+ LP+L
Sbjct: 2 SFKSLGLSSLVLQAVEEKGYKQPSPIQEQGIPVVLEGKDIMAAAQTGTGKTAAFTLPILS 61
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQV------YSEVMALIELCKGQVQLKVVQLTSS 140
+F + P S AL+L PTREL Q+ Y + + L K QV V +
Sbjct: 62 -MFENTKPASANNVKALILTPTRELAAQIDENIRYYGKHLNL----KTQVVFGGVGINPQ 116
Query: 141 MPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKS--FSDSLKILVLDEADLLLSYGY 198
M LR + D+++ATPG + + Q K+ FS+ L+ILVLDEAD +L G+
Sbjct: 117 M--IKLRRGV----DVLVATPGRL-----MDLYQQKAVKFSE-LEILVLDEADRMLDMGF 164
Query: 199 EDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-- 256
D+K + A++P+ Q LL SAT S D+ KL K I++NP V+ V PKN
Sbjct: 165 IHDIKKIMALLPKKRQNLLFSATFSDDIRKLAKTIVNNP----------VEISVNPKNST 214
Query: 257 ---VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAIL 313
V+Q I + K + L+K E + L+F T A RL FL K I ++ +
Sbjct: 215 AKAVEQVIIPVDKTSKNKLLSHLIK-ENNWHQVLVFCRTKHGADRLAKFLIKQNITASAI 273
Query: 314 NAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSE 373
+ Q +R L +F +G L ATD
Sbjct: 274 HGNKSQGARTRALADFKSGGVQVLAATDIA------------------------------ 303
Query: 374 FGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKS 433
RGID + ++NF++P A YVHRIGRTGRA TG + S + ++ K EI+S
Sbjct: 304 ---ARGIDISELPQIVNFDLPNIAEDYVHRIGRTGRAGATGHAYSFATIEDKKNISEIQS 360
Query: 434 FVGD 437
+G+
Sbjct: 361 LIGE 364
>gi|384422587|ref|YP_005631946.1| ATP-dependent RNA helicase VCA0061 [Vibrio cholerae LMA3984-4]
gi|327485295|gb|AEA79701.1| ATP-dependent RNA helicase VCA0061 [Vibrio cholerae LMA3984-4]
Length = 448
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 133/410 (32%), Positives = 210/410 (51%), Gaps = 49/410 (11%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F++LGLD RL+ L ++ T IQQ +IPL + G+D++A +KTGSGKT A++LP+LH+
Sbjct: 3 FKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHK 62
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+ +K P L+LVPTREL +QVY E+ +++ G + +T +D
Sbjct: 63 SLKTKAFSAK-DPRGLILVPTRELAKQVYGELRSML----GGLSYTATLITGGENFNDQV 117
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL-S 206
ALA P ++ATPG + L L F + L+ LVLDEAD +L G+ +L+ + +
Sbjct: 118 KALARGPRFIVATPGRLADHLDHRSL----FLEGLETLVLDEADRMLDLGFAKELRRIHN 173
Query: 207 AVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
A R Q L+ SAT +DV+ + +L+ P + +G +E K++ Q + C
Sbjct: 174 AAKHRRRQTLMFSATLDHADVNDMAMELLNEPKRIA---IGVGSEE--HKDITQHFYLCD 228
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
D +L + + ++ +IFT T RL L + +K+ L+ L Q R I
Sbjct: 229 HLDHKEALLDRILADAEYRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTI 288
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
+ +F +F L+ TD RG+D V
Sbjct: 289 MGQFERAVFKILVTTDVAS---------------------------------RGLDIPAV 315
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
VINF+MP++ YVHR+GRTGRA N G ++SLV P + + F+ +++F+
Sbjct: 316 THVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKRVEAFL 365
>gi|194224511|ref|XP_001501169.2| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Equus
caballus]
Length = 724
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 141/417 (33%), Positives = 200/417 (47%), Gaps = 49/417 (11%)
Query: 17 EEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGK 76
E+ ++ +E SF+++ L L+ A+ G ++PT IQ+A IP+ L GKD+ A A TG+GK
Sbjct: 227 EDASQYDESLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGK 286
Query: 77 TFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQ 136
T A+ LP+L RL + P+ LVLVPTREL QV+S L + C L V
Sbjct: 287 TAAFALPVLERLIYK--PRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGG 344
Query: 137 LTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLS 195
L + LRAA PDI+IATPG + L SF S+++L+LDEAD +L
Sbjct: 345 LDVKSQEAALRAA----PDILIATPGRLIDHLHN----CPSFHLSSIEVLILDEADRMLD 396
Query: 196 YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK 255
+E+ +K + + Q +L SAT + +V L + L NP + + + +V P
Sbjct: 397 EYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFV----NSNTDVAPF 452
Query: 256 NVQQFW-ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILN 314
Q+F I + I+ L ++FT T A R+ + L G++ L+
Sbjct: 453 LRQEFIRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELH 512
Query: 315 AELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEF 374
L Q RL L F D L+ATD
Sbjct: 513 GNLSQTQRLEALRRFKDEQIDILVATD--------------------------------- 539
Query: 375 GVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 431
RG+D + V TVINF MP YVHR+GRT RA G SVSLV +E K+ +EI
Sbjct: 540 VAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEI 596
>gi|254284787|ref|ZP_04959754.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae
AM-19226]
gi|150425572|gb|EDN17348.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae
AM-19226]
Length = 452
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 134/415 (32%), Positives = 211/415 (50%), Gaps = 49/415 (11%)
Query: 23 EEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLL 82
E F++LGLD RL+ L ++ T IQQ +IPL + G+D++A +KTGSGKT A++L
Sbjct: 2 ESTLQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVL 61
Query: 83 PLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMP 142
P+LH+ + +K P L+LVPTREL +QVY E+ +++ G + +T
Sbjct: 62 PMLHKSLKTKAFSAK-DPRGLILVPTRELAKQVYGELRSML----GGLSYTATLITGGEN 116
Query: 143 ASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 202
+D ALA P ++ATPG + L L F + L+ LVLDEAD +L G+ +L
Sbjct: 117 FNDQVKALARGPRFIVATPGRLADHLDHRSL----FLEGLETLVLDEADRMLDLGFAKEL 172
Query: 203 KAL-SAVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF 260
+ + +A R Q L+ SAT +DV+ + +L+ P + +G +E K++ Q
Sbjct: 173 RRIHNAAKHRRRQTLMFSATLDHADVNDMAMELLNEPKRIA---IGVGSEE--HKDITQH 227
Query: 261 WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 320
+ C D +L + + ++ +IFT T RL L + +K+ L+ L Q
Sbjct: 228 FYLCDHLDHKEALLDRILADAEYRQVIIFTATRADTDRLTEKLNQSNLKAVALSGNLNQT 287
Query: 321 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 380
R I+ +F +F L+ TD RG+
Sbjct: 288 QRNTIMGQFERAVFKILVTTDVAS---------------------------------RGL 314
Query: 381 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
D V VINF+MP++ YVHR+GRTGRA N G ++SLV P + + F+ +++F+
Sbjct: 315 DIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKRVEAFL 369
>gi|395829165|ref|XP_003787731.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
DDX27 [Otolemur garnettii]
Length = 795
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 140/417 (33%), Positives = 200/417 (47%), Gaps = 49/417 (11%)
Query: 17 EEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGK 76
E+ ++ +E SF+++ L L+ A+ G ++PT IQ+A IP+ L GKD+ A A TG+GK
Sbjct: 208 EDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGK 267
Query: 77 TFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQ 136
T A+ LP+L RL + P+ LVLVPTREL QV+S L + C L V
Sbjct: 268 TAAFALPVLERLIYK--PRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGG 325
Query: 137 LTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLS 195
L + LRAA PDI+IATPG + L SF S+++L+LDEAD +L
Sbjct: 326 LDVKSQEAALRAA----PDILIATPGRLIDHLHN----CPSFHLSSIEVLILDEADRMLD 377
Query: 196 YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK 255
+E+ +K + + Q +L SAT + +V L + L NP + + + +V P
Sbjct: 378 EYFEEQMKEIIRLCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFV----NSNTDVAPF 433
Query: 256 NVQQFW-ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILN 314
Q+F I + I+ L ++FT T A R+ + L G++ L+
Sbjct: 434 LRQEFIRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELH 493
Query: 315 AELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEF 374
L Q RL L F D L+ATD
Sbjct: 494 GNLSQTQRLEALRRFKDEQIDILVATD--------------------------------- 520
Query: 375 GVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 431
RG+D + V TVINF MP YVHR+GRT RA G SVSLV +E ++ +EI
Sbjct: 521 VAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERRMLKEI 577
>gi|164660112|ref|XP_001731179.1| hypothetical protein MGL_1362 [Malassezia globosa CBS 7966]
gi|159105079|gb|EDP43965.1| hypothetical protein MGL_1362 [Malassezia globosa CBS 7966]
Length = 638
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 143/438 (32%), Positives = 208/438 (47%), Gaps = 74/438 (16%)
Query: 15 AEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGS 74
A+EE E+ F L L+ L+ L +PT IQ +IP+ L GKD+VA A TGS
Sbjct: 66 AKEEPKESPIPTDFTALQLNRALLRGLAALNFSRPTPIQARTIPIALAGKDIVAGAVTGS 125
Query: 75 GKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIE-------LCK 127
GKT A+L+P++ RL +VL PTREL Q +S AL + LC
Sbjct: 126 GKTAAFLIPIMERLSYRQRSADDAKSRVVVLCPTRELAIQCHSVAQALGKFMNVRFCLCV 185
Query: 128 GQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILV 186
G + LK+ + A L PD++IATPG L V S SF + ++ILV
Sbjct: 186 GGLSLKLQE-----------AELKTRPDVIIATPG----RLIDHVRNSASFGMEDVEILV 230
Query: 187 LDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVG 246
+DEAD +L G+ED+L + + P+ Q +L SAT + DVD+L +L L P L +
Sbjct: 231 MDEADRMLEDGFEDELNEIVRLCPKQRQTMLFSATMTEDVDQLVRLSLRTPVRLFV---- 286
Query: 247 DVKDEVIPKNVQQFWISCSERDKLL-------------YILTLLKLELVQKKALIFTNTI 293
D K K Q+F + + +L IL L + + + +IF +
Sbjct: 287 DPKRSTASKLTQEF-VRVRAQSRLTGHARQQAEDQHRAAILVTLCMRTFRDQVIIFVRSK 345
Query: 294 DMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDE 353
+A +LK+ G+ +A L+ +L Q RL L F G D+L+ATD
Sbjct: 346 KLAHQLKILFGLLGLSAAELHGDLSQEQRLQSLSLFRDGKVDFLLATD------------ 393
Query: 354 GGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNT 413
L S RGID + V TVIN++MP Y+HR+GRT RA
Sbjct: 394 ----------------LAS-----RGIDIRGVQTVINYDMPAQLEPYLHRVGRTARAGRQ 432
Query: 414 GASVSLVSPDEMKIFEEI 431
G +V+LV + ++ + +
Sbjct: 433 GRAVTLVGEPDRRLLKTV 450
>gi|333921425|ref|YP_004495006.1| ATP-dependent RNA helicase DeaD [Amycolicicoccus subflavus
DQS3-9A1]
gi|333483646|gb|AEF42206.1| ATP-dependent RNA helicase DeaD [Amycolicicoccus subflavus
DQS3-9A1]
Length = 534
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 130/416 (31%), Positives = 204/416 (49%), Gaps = 47/416 (11%)
Query: 21 EAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAY 80
E E SF ELG++ +V ALN++GI++ IQ+ ++PL L G+D++ +A+TG GKTF +
Sbjct: 24 EPHESPSFAELGVNDNIVRALNEQGIERTFAIQELTLPLALAGEDLIGQARTGMGKTFGF 83
Query: 81 LLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQV-----QLKVV 135
+PLLHR+ S+P P ALV+VPTRELC QV ++ A +L V
Sbjct: 84 GVPLLHRIVTGSAPLDG-TPRALVVVPTRELCIQVTKDLTAAGRYLSAGANGSSRKLSVS 142
Query: 136 QLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLS 195
+ P + +AL+ D+V+ TPG + + L+ D + I+VLDEAD +L
Sbjct: 143 AIYGGRPYEEQTSALSAGVDVVVGTPGRLLDLANQKYLK----LDGISIVVLDEADEMLD 198
Query: 196 YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK 255
G+ D++ + + +P Q +L SAT + L + L P + E +
Sbjct: 199 LGFLPDIEKILSRVPDVRQTMLFSATMPGPIITLARTFLTQPTHVRAEE---TDSSAVHD 255
Query: 256 NVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNA 315
+QF DKL + +L+ + A++FT T A +L LE+ G ++
Sbjct: 256 RTRQFVYRAHALDKLELVSKVLQAR-ERGAAMVFTRTKRQADQLSRDLEQRGFAVCAIHG 314
Query: 316 ELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFG 375
+L Q +R L F +G + L+ATD
Sbjct: 315 DLGQGAREKALRSFRSGKANVLVATDV--------------------------------- 341
Query: 376 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 431
RGID +V V+NF P + YVHR+GRTGRA TG +V+LV ++++ ++ I
Sbjct: 342 AARGIDIDDVTHVVNFHCPDDENTYVHRVGRTGRAGRTGIAVTLVDWEDLERWKHI 397
>gi|258624240|ref|ZP_05719189.1| ATP-dependent RNA helicase, DEAD box family [Vibrio mimicus VM603]
gi|449145682|ref|ZP_21776483.1| DEAD-box ATP dependent DNA helicase [Vibrio mimicus CAIM 602]
gi|258583391|gb|EEW08191.1| ATP-dependent RNA helicase, DEAD box family [Vibrio mimicus VM603]
gi|449078630|gb|EMB49563.1| DEAD-box ATP dependent DNA helicase [Vibrio mimicus CAIM 602]
Length = 452
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 135/415 (32%), Positives = 210/415 (50%), Gaps = 49/415 (11%)
Query: 23 EEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLL 82
E F++LGLD RL+ L ++ T IQQ +IPL + G+D++A +KTGSGKT A++L
Sbjct: 2 ENTLQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLSIAGRDLLASSKTGSGKTLAFVL 61
Query: 83 PLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMP 142
P+LH+ + +K P ++LVPTREL +QVY E+ +++ G + +T
Sbjct: 62 PMLHKSLKTKAFSAK-DPRGVILVPTRELAKQVYGELRSML----GGLSYTATLITGGEN 116
Query: 143 ASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 202
+D ALA P ++ATPG + L L F D L+ LVLDEAD +L G+ +L
Sbjct: 117 FNDQVKALARDPKFIVATPGRLADHLDHRSL----FLDGLETLVLDEADRMLDLGFAKEL 172
Query: 203 KAL-SAVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF 260
+ + +A R Q L+ SAT +DV+ + +L+ P + +G +E K++ Q
Sbjct: 173 RRIHNAAKHRRRQTLMFSATLDHADVNDIAMEMLNEPKRIA---IGVGSEE--HKDITQH 227
Query: 261 WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 320
+ C D +L + + ++ +IFT T RL L + +K+ L+ L Q
Sbjct: 228 FYLCDHLDHKEALLERILADAEYRQVIIFTATRADTDRLTEKLNQSNLKAVALSGNLNQA 287
Query: 321 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 380
R I+ +F +F L+ TD RG+
Sbjct: 288 QRNTIMSQFERVVFKILVTTDVAS---------------------------------RGL 314
Query: 381 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
D V VINF+MP++ YVHRIGRTGRA N G ++SLV P + F+ +++F+
Sbjct: 315 DIPTVTHVINFDMPKHTEEYVHRIGRTGRAGNKGDAMSLVGPKDWDSFKRVEAFL 369
>gi|421349748|ref|ZP_15800117.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-25]
gi|395956365|gb|EJH66959.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-25]
Length = 448
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 133/410 (32%), Positives = 210/410 (51%), Gaps = 49/410 (11%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F++LGLD RL+ L ++ T IQQ +IPL + G+D++A +KTGSGKT A++LP+LH+
Sbjct: 3 FKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHK 62
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+ +K P L+LVPTREL +QVY E+ +++ G + +T +D
Sbjct: 63 SLKTKAFSAK-DPRGLILVPTRELAKQVYGELRSML----GGLSYTATLITGGENFNDQV 117
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL-S 206
ALA P ++ATPG + L L F + L+ LVLDEAD +L G+ +L+ + +
Sbjct: 118 KALARGPRFIVATPGRLADHLDHRSL----FLEGLETLVLDEADRMLDLGFAKELRRIHN 173
Query: 207 AVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
A R Q L+ SAT +DV+ + +L+ P + +G +E K++ Q + C
Sbjct: 174 AAKHRRRQTLMFSATLDHADVNDMAMELLNEPKRIA---IGVGSEE--HKDITQHFYLCD 228
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
D +L + + ++ +IFT T RL L + +K+ L+ L Q R I
Sbjct: 229 HLDHKEALLDRILADAEYRQVIIFTATRADTDRLTEKLNQSNLKAVALSGNLNQTQRNTI 288
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
+ +F +F L+ TD RG+D V
Sbjct: 289 MGQFERAVFKILVTTDVAS---------------------------------RGLDIPAV 315
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
VINF+MP++ YVHR+GRTGRA N G ++SLV P + + F+ +++F+
Sbjct: 316 THVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKRVEAFL 365
>gi|417401266|gb|JAA47524.1| Putative atp-dependent rna helicase [Desmodus rotundus]
Length = 455
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 134/424 (31%), Positives = 217/424 (51%), Gaps = 53/424 (12%)
Query: 14 QAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTG 73
+A + E EE K+F++LG+ L A ++ G KPT IQ +IPL L+G+D++ A+TG
Sbjct: 12 EAPQPALEEEEAKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETG 71
Query: 74 SGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLK 133
SGKT A+ LP+L+ L +P+ ALVL PTREL Q+ + AL + ++
Sbjct: 72 SGKTGAFALPILNALLE--TPQRLF---ALVLTPTRELAFQISEQFEAL----GSSIGVQ 122
Query: 134 VVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADL 192
+ + + ALA P IVIATPG + L +K F+ +LK LV+DEAD
Sbjct: 123 SAVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLE----NTKGFNLRALKYLVMDEADR 178
Query: 193 LLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEV 252
+L+ +E ++ + VIPR + L SAT + V KL++ L NP + K +
Sbjct: 179 ILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQT 234
Query: 253 IPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAI 312
+ K +QQ++I + K Y++ +L EL +IF +T + R L L G +
Sbjct: 235 VEK-LQQYYIFIPSKFKDTYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIP 292
Query: 313 LNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDS 372
L+ ++ Q+ RL L +F A L+ATD
Sbjct: 293 LHGQMNQSKRLGSLNKFKAKARSILLATDVAS---------------------------- 324
Query: 373 EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432
RG+D +V V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+
Sbjct: 325 -----RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIE 379
Query: 433 SFVG 436
+G
Sbjct: 380 HLIG 383
>gi|76808776|ref|YP_332762.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1710b]
gi|76578229|gb|ABA47704.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
1710b]
Length = 559
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 132/416 (31%), Positives = 212/416 (50%), Gaps = 54/416 (12%)
Query: 25 EKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPL 84
+ +F++ GL ++ A+ ++G PT IQ +IP++L G+DV+ A+TG+GKT ++ LP+
Sbjct: 87 DATFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPI 146
Query: 85 LHRLF---NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELC--KGQVQLKVVQLTS 139
+ RL N S+ ++ AL+L PTREL QV + V A + + V V +
Sbjct: 147 IQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNP 206
Query: 140 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE 199
M ++LR + +I+IATPG L V Q + ++ILVLDEAD +L G+
Sbjct: 207 QM--AELRRGV----EILIATPG----RLLDHVQQKTANLGQVQILVLDEADRMLDMGFL 256
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
DL+ + ++P+ Q LL SAT S ++ KL L NP + + + V Q
Sbjct: 257 PDLQRILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEV-----ARSNAAASTVTQ 311
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+E DK ++ L++ + K+ ++F N+ A RL +E+ GI +A ++ + Q
Sbjct: 312 IVYDVAEGDKQAAVVKLIR-DRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQ 370
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
+ R+ L+ F G + L+ATD RG
Sbjct: 371 SERMQALDAFKRGEIEALVATDV---------------------------------AARG 397
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+D + VINF++P NA YVHRIGRTGRA +G ++SL SP+E K +I+ +
Sbjct: 398 LDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLADIEKLI 453
>gi|374329697|ref|YP_005079881.1| DEAD/DEAH box helicase [Pseudovibrio sp. FO-BEG1]
gi|359342485|gb|AEV35859.1| DEAD/DEAH box helicase domain protein [Pseudovibrio sp. FO-BEG1]
Length = 483
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 141/414 (34%), Positives = 207/414 (50%), Gaps = 53/414 (12%)
Query: 26 KSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLL 85
K+F+E GL ++ A+ ++G + PT IQ+ IPL+ EG+D++ A+TG+GKT A++LPLL
Sbjct: 2 KNFDEAGLAEPILRAVKEEGYEAPTPIQREVIPLMKEGEDILGIAQTGTGKTAAFVLPLL 61
Query: 86 HRLFNESSPKSKLAP---AALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMP 142
RL + + K AP AL+L PTREL Q+ V + V V P
Sbjct: 62 TRLAED---RKKAAPHTCRALILAPTRELASQIAESVRTYGQFIGPSV---AVIFGGVKP 115
Query: 143 ASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 202
LRA G DIVIATPG + +STG ++ D+ +VLDEAD +L G+ +
Sbjct: 116 GPQLRALSKG-LDIVIATPGRLEDHMSTGGIK----LDATTTVVLDEADQMLDLGFAPAI 170
Query: 203 KALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWI 262
+ + +P+ Q +L+SAT + L K L NP+ +++ V E I ++V +F
Sbjct: 171 RRILGKLPKVRQTVLLSATMPIQIRNLAKEFLSNPHEISVAPV-SRPIEKIDQSV-RFLN 228
Query: 263 SCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 322
S S+R LL IL+ +E +A++FT T A R+ LEK G+ SA ++ Q +R
Sbjct: 229 SSSKRAALLDILSEDDIE----RAIVFTRTKRGADRVSGHLEKAGLSSAAIHGNKSQRNR 284
Query: 323 LHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDF 382
L+ F G L+ATD RGID
Sbjct: 285 EKSLDGFKNGRIKILVATDI---------------------------------AARGIDI 311
Query: 383 KNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
V V+N+E+P YVHRIGRT RA +G +VSL E +I+ +G
Sbjct: 312 DGVSHVVNYELPNVPEAYVHRIGRTARAGKSGVAVSLCDATEQPYLRDIERLIG 365
>gi|315055611|ref|XP_003177180.1| ATP-dependent rRNA helicase RRP3 [Arthroderma gypseum CBS 118893]
gi|311339026|gb|EFQ98228.1| ATP-dependent rRNA helicase RRP3 [Arthroderma gypseum CBS 118893]
Length = 474
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 135/432 (31%), Positives = 219/432 (50%), Gaps = 52/432 (12%)
Query: 6 EIPSKEVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKD 65
E+ + +++ +E A+ + K+F++LG+ L A G + PT IQ SIPL L+G+D
Sbjct: 29 ELEQEALEEGSDETADTKVPKTFKDLGIIDSLCDACTSLGYKAPTPIQAESIPLALQGRD 88
Query: 66 VVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIEL 125
+V A+TGSGKT A+ LP+L L + P LVL PTREL Q+ AL L
Sbjct: 89 LVGLAETGSGKTAAFALPILQALMEKPQPY-----FGLVLAPTRELAVQISESFEALGSL 143
Query: 126 CKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKI 184
+ ++ + M +L P I++ATPG + L +K FS +LK
Sbjct: 144 ----ISVRCAVIVGGMDMISQSISLGKKPHIIVATPGRLLDHLE----NTKGFSLRNLKY 195
Query: 185 LVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPE 244
LV+DEAD LL + L + V+PR + L SAT SS V+ L++ L NP ++
Sbjct: 196 LVMDEADRLLDLDFGPVLDKILKVLPRERRTYLFSATLSSKVESLQRASLSNPLRVS--- 252
Query: 245 VGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLE 304
+ K + + + Q +I + K +Y++ +L E + +IFT T++ RL + L
Sbjct: 253 ISSNKYQTV-STLLQSYIFIPHKYKDIYLVHILN-EFPGQTTIIFTRTVNETQRLSILLR 310
Query: 305 KFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKK 364
G + L+ +L Q++RL L +F +G D L+ATD
Sbjct: 311 ALGFGAIPLHGQLSQSARLGALGKFRSGSRDILVATDV---------------------- 348
Query: 365 HPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE 424
RG+D V V+NF++P ++ Y+HR+GRT RA +G ++S+V+ E
Sbjct: 349 -----------AARGLDIPAVDLVLNFDLPSDSKTYIHRVGRTARAGKSGRAISVVTQYE 397
Query: 425 MKIFEEIKSFVG 436
++I++ I++ +G
Sbjct: 398 VEIWQRIEAALG 409
>gi|332232745|ref|XP_003265564.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Nomascus
leucogenys]
Length = 455
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 132/424 (31%), Positives = 217/424 (51%), Gaps = 53/424 (12%)
Query: 14 QAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTG 73
+A + E EE K+F++LG+ L A ++ G KPT IQ +IPL L+G+D++ A+TG
Sbjct: 12 EASQPMVEEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETG 71
Query: 74 SGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLK 133
SGKT A+ LP+L+ L +P+ ALVL PTREL Q+ + AL + ++
Sbjct: 72 SGKTGAFALPILNALLE--TPQRLF---ALVLTPTRELAFQISEQFEAL----GSSIGVQ 122
Query: 134 VVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADL 192
+ + + ALA P ++IATPG + L +K F+ +LK LV+DEAD
Sbjct: 123 SAVIVGGIDSMSQSLALAKKPHVIIATPGRLIDHLE----NTKGFNLRALKYLVMDEADR 178
Query: 193 LLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEV 252
+L+ +E ++ + VIPR + L SAT + V KL++ L NP + K +
Sbjct: 179 ILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQT 234
Query: 253 IPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAI 312
+ K +QQ++I + K Y++ +L EL +IF +T + R L L G +
Sbjct: 235 VEK-LQQYYIFIPSKFKDTYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIP 292
Query: 313 LNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDS 372
L+ ++ Q+ RL L +F A L+ATD
Sbjct: 293 LHGQMSQSKRLGSLNKFKAKARSILLATDVAS---------------------------- 324
Query: 373 EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432
RG+D +V V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+
Sbjct: 325 -----RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIE 379
Query: 433 SFVG 436
+G
Sbjct: 380 YLIG 383
>gi|326473339|gb|EGD97348.1| ATP-dependent RNA helicase DRS1 [Trichophyton tonsurans CBS 112818]
Length = 700
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 137/425 (32%), Positives = 208/425 (48%), Gaps = 54/425 (12%)
Query: 14 QAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTG 73
Q E ++ + SF+ L L ++ L G PT IQ+ +IP+ L GKDVV A TG
Sbjct: 284 QVTESKSTSGAPASFQNLSLSRPILRGLASVGFSTPTPIQRKTIPVALLGKDVVGGAVTG 343
Query: 74 SGKTFAYLLPLLHRLFNESS--PKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQ 131
SGKT A+++P+L RL P S++A +L+PTREL Q Y+ L
Sbjct: 344 SGKTGAFIVPILERLLYRPRKVPTSRVA----ILMPTRELAVQCYNVATKLATFT----D 395
Query: 132 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEA 190
+ QL + L PD++IATPG + S SF+ D+L+ILVLDEA
Sbjct: 396 ITFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMR----NSASFTVDTLEILVLDEA 451
Query: 191 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD 250
D +L G+ ++L + IP+ Q +L SAT ++ VDKL ++ L+ P L + D K
Sbjct: 452 DRMLEDGFAEELNEILTTIPKSRQTMLFSATMTNSVDKLIRVGLNKPVRLMV----DSKK 507
Query: 251 EVIPKNVQQF-WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIK 309
+ + VQ+F + DK L L L + + ++F A R+++ G+K
Sbjct: 508 QTVGTLVQEFVRLRPGREDKRLGYLMFLCKTVYSNRVIVFFRQKKEAHRVRIVFGLMGLK 567
Query: 310 SAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAK 369
+A L+ + Q R+ +E+F YL+ATD
Sbjct: 568 AAELHGSMSQEQRIKSVEDFRDAKVSYLLATD---------------------------- 599
Query: 370 LDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS-PDEMKIF 428
L S RG+D K V TVIN+E PQ+ Y+HR+GRT RA +G + ++ + PD +
Sbjct: 600 LAS-----RGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVK 654
Query: 429 EEIKS 433
E +K+
Sbjct: 655 EAVKA 659
>gi|254374244|ref|ZP_04989726.1| hypothetical protein FTDG_00409 [Francisella novicida GA99-3548]
gi|151571964|gb|EDN37618.1| hypothetical protein FTDG_00409 [Francisella novicida GA99-3548]
Length = 441
Score = 192 bits (489), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 128/410 (31%), Positives = 210/410 (51%), Gaps = 50/410 (12%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F +LGL+ + AL KKG KPT IQ +IP++L+G DV+A A+TG+GKT + LP++ R
Sbjct: 3 FSDLGLNSLICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQR 62
Query: 88 LFNESSPKSKLAPA-ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
L ++ PK++ L+L PTREL Q+ + I++ ++ + + +
Sbjct: 63 LLDQ--PKAQANRIKTLILTPTRELAAQIQEQ----IQIYAANTHIRSAVIFGGVSINPQ 116
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
L +I+IATPG + S ++ DSL VLDEAD +L G+ +DLK +
Sbjct: 117 MMKLRKGVEILIATPGRLLDLYSQNAVK----FDSLNTFVLDEADRMLDMGFINDLKKIH 172
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
++P+ Q L+ SAT SS++ L L+NP ++ DV + + K Q+ + + +
Sbjct: 173 KLLPKKLQTLMFSATFSSEIKNLANEFLNNPQFVS----ADVVNTTVKKITQKIY-TLDK 227
Query: 267 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
+K+ +++L+K + + + L+F+ T + A ++ L GI S+ ++ Q +R L
Sbjct: 228 SNKINALISLIKDQNLH-QVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKAL 286
Query: 327 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 386
+F + + L+ATD RGID +
Sbjct: 287 ADFKSNDINVLVATDIA---------------------------------ARGIDIAQLP 313
Query: 387 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
VIN ++P A YVHRIGRTGRA G ++SLVS DE++ I+ +G
Sbjct: 314 CVINLDLPNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSNIEHLIG 363
>gi|327307140|ref|XP_003238261.1| ATP-dependent rRNA helicase RRP3 [Trichophyton rubrum CBS 118892]
gi|326458517|gb|EGD83970.1| ATP-dependent rRNA helicase RRP3 [Trichophyton rubrum CBS 118892]
Length = 474
Score = 192 bits (489), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 135/425 (31%), Positives = 216/425 (50%), Gaps = 52/425 (12%)
Query: 13 KQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKT 72
+++ EE A+ + K+F++LG+ L A G + PT IQ SIPL L+G+D+V A+T
Sbjct: 36 EESGEEPADTKAPKTFKDLGIIDSLCDACTSLGYKTPTPIQAESIPLALQGRDLVGLAET 95
Query: 73 GSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQL 132
GSGKT A+ LP+L L + P LVL PTREL Q+ AL L + +
Sbjct: 96 GSGKTAAFALPILQALMEKPQPY-----FGLVLAPTRELAVQISEAFEALGSL----ISV 146
Query: 133 KVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEAD 191
+ + M +L P I++ATPG + L +K FS +LK LV+DEAD
Sbjct: 147 RCAVIVGGMDMISQSISLGKKPHIIVATPGRLLDHLE----NTKGFSLRNLKYLVMDEAD 202
Query: 192 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 251
LL + L + V+PR + L SAT SS V+ L++ L NP ++ + K +
Sbjct: 203 RLLDLDFGPVLDKILKVLPRERRTYLFSATLSSKVESLQRASLSNPLRVS---ISSNKYQ 259
Query: 252 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 311
+ + Q +I + K +Y++ +L E + +IFT T++ RL + L G +
Sbjct: 260 TV-STLLQSYIFIPHKYKDIYLVHILN-EFPGQTTIIFTRTVNETQRLSILLRALGFGAI 317
Query: 312 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLD 371
L+ +L Q++RL L +F +G D L+ATD
Sbjct: 318 PLHGQLSQSARLGALGKFRSGSRDILVATDV----------------------------- 348
Query: 372 SEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 431
RG+D V V+NF++P ++ Y+HR+GRT RA +G ++S+V+ E++I++ I
Sbjct: 349 ----AARGLDIPAVDLVLNFDLPSDSKTYIHRVGRTARAGKSGRAISVVTQYEVEIWQRI 404
Query: 432 KSFVG 436
++ +G
Sbjct: 405 EAALG 409
>gi|164428960|ref|XP_001728501.1| hypothetical protein NCU11175 [Neurospora crassa OR74A]
gi|157072353|gb|EDO65410.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 857
Score = 192 bits (489), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 139/429 (32%), Positives = 213/429 (49%), Gaps = 52/429 (12%)
Query: 24 EEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLP 83
E SF+E+ L ++ L G KPT IQ +IP+ L GKDVV A TGSGKT A+++P
Sbjct: 291 EMSSFQEMSLSRPILRGLTSVGFTKPTPIQAKTIPISLMGKDVVGGAVTGSGKTAAFVVP 350
Query: 84 LLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPA 143
+L RL PK ++L PTREL Q ++ + L + L V L+ +
Sbjct: 351 ILERLLYR--PKKVPTTRVVILTPTRELAIQCHAVAVKLASHTDIKFCLAVGGLSLKVQE 408
Query: 144 SDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDL 202
++LR PD+VIATPG + S SF+ D+++ILVLDEAD +L G+ D+L
Sbjct: 409 AELRLR----PDVVIATPGRFIDHMR----NSASFAVDTIEILVLDEADRMLEDGFADEL 460
Query: 203 KALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-- 260
+ +P+ Q +L SAT +S VD+L + L+ P + + D + + VQ+F
Sbjct: 461 NEILTTLPKSRQTMLFSATMTSSVDRLIRAGLNKPVRI----MADSQKKTAGTLVQEFVR 516
Query: 261 WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 320
E + Y+L + K + ++ +IF +A ++++ FG+ A L+ + Q
Sbjct: 517 LRPGRESKREGYLLHICKT-IYTERVIIFFRQKKIAHKMRIIFGLFGLSCAELHGSMNQA 575
Query: 321 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 380
R+ +E+F G ++L+ATD L S RG+
Sbjct: 576 QRIQSVEDFRDGKVNFLLATD----------------------------LAS-----RGL 602
Query: 381 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS-PDEMKIFEEIKSFVGDDE 439
D K V TVIN+E PQ YVHR+GRT RA +G +++L + PD + +K+
Sbjct: 603 DIKGVDTVINYEAPQTPEIYVHRVGRTARAGRSGTAITLAAEPDRKVVKAAVKAGKSQGA 662
Query: 440 NEDSNIIAP 448
S II P
Sbjct: 663 KISSRIIDP 671
>gi|395237134|ref|ZP_10415233.1| ATP-dependent RNA helicase DeaD [Turicella otitidis ATCC 51513]
gi|423351003|ref|ZP_17328655.1| hypothetical protein HMPREF9719_00950 [Turicella otitidis ATCC
51513]
gi|394487633|emb|CCI83321.1| ATP-dependent RNA helicase DeaD [Turicella otitidis ATCC 51513]
gi|404387055|gb|EJZ82184.1| hypothetical protein HMPREF9719_00950 [Turicella otitidis ATCC
51513]
Length = 704
Score = 192 bits (489), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 131/425 (30%), Positives = 203/425 (47%), Gaps = 52/425 (12%)
Query: 9 SKEVKQAEEEEAEAEEEK-SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVV 67
+ E Q +E E+E FE LG+ ++ A+ K G KP+ IQ +IPL++ G+DVV
Sbjct: 81 AAEAAQGDEARESGEDEGPGFESLGISEEMLAAVKKAGFTKPSPIQAETIPLLMAGRDVV 140
Query: 68 ARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCK 127
A+TG+GKT A+ LP+L ++ K++ P ALVL PTREL QV K
Sbjct: 141 GLAQTGTGKTAAFALPVLSKV----DLKAR-TPQALVLAPTRELAAQVADSFQEFAGDLK 195
Query: 128 GQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVL 187
G L+V+ + + L I++ TPG + L G L LK LVL
Sbjct: 196 G---LEVLPVYGGQSYGFQLSGLRRGAQIIVGTPGRIIDHLKRGSLDIS----ELKYLVL 248
Query: 188 DEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGD 247
DEAD +L+ G+++D++ + P Q L SAT + + K+ + L NP +T+
Sbjct: 249 DEADEMLNMGFQEDVERILEDTPEAKQVALFSATMPAGIRKISQQYLTNPAEVTVK---- 304
Query: 248 VKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFG 307
E N+ Q WI RDKL ++ +L++ V ++F T + L G
Sbjct: 305 -TREKTNTNITQRWIFVPHRDKLQALVRILEVTDVD-GMIVFVRTKSETEEVADALRAAG 362
Query: 308 IKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPK 367
+A +N ++ Q R +E+ +G D L+ATD
Sbjct: 363 FSAAAINGDIAQAQRERTVEQLKSGRLDILVATDV------------------------- 397
Query: 368 AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 427
RG+D + + V+NF++P+ A YVHRIGRTGRA +G ++ V+P E ++
Sbjct: 398 --------AARGLDVERISHVVNFDIPREAESYVHRIGRTGRAGRSGEAILFVTPKEKRM 449
Query: 428 FEEIK 432
I+
Sbjct: 450 LRTIE 454
>gi|385792772|ref|YP_005825748.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|328676918|gb|AEB27788.1| ATP-dependent RNA helicase RhlE [Francisella cf. novicida Fx1]
Length = 442
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 128/410 (31%), Positives = 210/410 (51%), Gaps = 50/410 (12%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F +LGL+ + AL KKG KPT IQ +IP++L+G DV+A A+TG+GKT + LP++ R
Sbjct: 3 FSDLGLNSLICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQR 62
Query: 88 LFNESSPKSKLAPA-ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
L ++ PK++ L+L PTREL Q+ + I++ ++ + + +
Sbjct: 63 LLDQ--PKAQANRIKTLILTPTRELAAQIQEQ----IQIYAANTHIRSAVIFGGVSINPQ 116
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
L +I+IATPG + S ++ DSL VLDEAD +L G+ +DLK +
Sbjct: 117 MMKLRKGVEILIATPGRLLDLYSQNAVK----FDSLNTFVLDEADRMLDMGFINDLKKIH 172
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
++P+ Q L+ SAT SS++ L L+NP ++ DV + + K Q+ + + +
Sbjct: 173 KLLPKKLQTLMFSATFSSEIKNLANEFLNNPQFVS----ADVVNTTVKKITQKIY-TLDK 227
Query: 267 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
+K+ +++L+K + + + L+F+ T + A ++ L GI S+ ++ Q +R L
Sbjct: 228 SNKINALISLIKDQNLH-QVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKAL 286
Query: 327 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 386
+F + + L+ATD RGID +
Sbjct: 287 ADFKSNDINVLVATDIA---------------------------------ARGIDIAQLP 313
Query: 387 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
VIN ++P A YVHRIGRTGRA G ++SLVS DE++ I+ +G
Sbjct: 314 CVINLDLPNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSNIEHLIG 363
>gi|357500171|ref|XP_003620374.1| ATP-dependent RNA helicase [Medicago truncatula]
gi|355495389|gb|AES76592.1| ATP-dependent RNA helicase [Medicago truncatula]
Length = 431
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 135/412 (32%), Positives = 203/412 (49%), Gaps = 51/412 (12%)
Query: 26 KSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLL 85
KSF++LGL LV A K G + P IQ +IP LEGKD++ A+TGSGKT A+ LP+L
Sbjct: 2 KSFKDLGLPESLVEACEKMGWKNPLKIQIEAIPPALEGKDLIGLAETGSGKTGAFALPIL 61
Query: 86 HRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASD 145
H L P A V+ PTREL Q+ + AL ++ +K L +
Sbjct: 62 HALLEAPRPNHFF---ACVMSPTRELAIQISEQFEAL----GSEIGVKCAVLVGGIDMVQ 114
Query: 146 LRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS-LKILVLDEADLLLSYGYEDDLKA 204
+A P I++ TPG + L +K FS + LK LVLDEAD LL+ +E+ L
Sbjct: 115 QSVKIAKLPHIIVGTPGRVLDHLK----NTKGFSLARLKYLVLDEADRLLNEDFEESLNE 170
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264
+ +IPR + L SAT + V+KL+++ L NP + D + K +F +
Sbjct: 171 ILGMIPRERRTFLFSATMTKKVEKLQRVCLRNPVKIETSSKYSTVDTL--KQQYRFLPAK 228
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
+ L+YILT E+ +++FT T D L L L G+K+ +N + Q RL
Sbjct: 229 HKDCYLVYILT----EMAGSTSMVFTRTCDSTRLLALILRNLGLKAIPINGHMSQPKRLG 284
Query: 325 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 384
L +F +G + L+ TD RG+D
Sbjct: 285 ALNKFKSGDCNILLCTDVAS---------------------------------RGLDIPA 311
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
V VIN+++P N+ Y+HR+GRT RA +G ++SLV+ E++ + +I+ +G
Sbjct: 312 VDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYVQIEKLIG 363
>gi|116195380|ref|XP_001223502.1| hypothetical protein CHGG_04288 [Chaetomium globosum CBS 148.51]
gi|118595827|sp|Q2H1Q8.1|RRP3_CHAGB RecName: Full=ATP-dependent rRNA helicase RRP3
gi|88180201|gb|EAQ87669.1| hypothetical protein CHGG_04288 [Chaetomium globosum CBS 148.51]
Length = 493
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 146/476 (30%), Positives = 235/476 (49%), Gaps = 63/476 (13%)
Query: 4 SKEIPSKEVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEG 63
+ E S+ + A EE+E K+F++LG+ L A + G +KPT IQQ SIPL L+
Sbjct: 43 NSEAESETIDDASGEESEEPAPKTFQDLGIVDSLCDACKELGWKKPTPIQQESIPLALQD 102
Query: 64 KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALI 123
+D++ A+TGSGKT A+ LP+L L ++ P ALVL PTREL Q+ AL
Sbjct: 103 RDIIGLAETGSGKTGAFALPILQALLDKPQPL-----FALVLAPTRELAAQIAQSFEALG 157
Query: 124 ELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSL 182
L + L+ + + AL P +V+ATPG + L ++K FS +L
Sbjct: 158 SL----ISLRCALILGGLDMVQQAIALGKKPHVVVATPGRLLDHLE----KTKGFSLRNL 209
Query: 183 KILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL 242
+ LV+DEAD LL + L + +PR + L SAT SS V+ L++ L +P ++
Sbjct: 210 RYLVMDEADRLLDMDFGPILDKILKFLPRERRTFLFSATMSSKVESLQRACLRDPLKVS- 268
Query: 243 PEVGDVKDEVIPKNVQQF-WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKL 301
+ K + + VQ + +I + +D Y++ L E + +IFT T+ R+ +
Sbjct: 269 --ISSSKYQTVSTLVQNYVFIPHTHKDT--YLIYLCN-EFAGQTIIIFTRTVIETQRIAI 323
Query: 302 FLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRK 361
L G+ + L+ L Q++RL L +F AG D L+ATD
Sbjct: 324 LLRTLGMGAIPLHGGLSQSARLGALNKFRAGSRDILVATDV------------------- 364
Query: 362 SKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS 421
RG+D NV V+N ++P ++ YVHR+GRT RA +G ++S V+
Sbjct: 365 --------------AARGLDIPNVDCVLNLDLPGDSKTYVHRVGRTARAGRSGHAISFVT 410
Query: 422 PDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVR 477
+++++ I++ +G E S L ++ V R R E+ A+ + K ++
Sbjct: 411 QYDLELWLRIEAALGTKLTEYS--------LEKDDVMVFRPRVEE-AQRIAKTEIK 457
>gi|406915896|gb|EKD54936.1| hypothetical protein ACD_60C00032G0020 [uncultured bacterium]
Length = 457
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 128/411 (31%), Positives = 209/411 (50%), Gaps = 51/411 (12%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
+F E L+ + A++ G + PT +Q SIP IL+GKDVVA A+TG+GKT +++LP LH
Sbjct: 2 TFAEFNLNPHIFKAIDACGYKNPTPVQAKSIPEILQGKDVVASAQTGTGKTASFVLPALH 61
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
RL S+ K+ P L+L PTREL Q+ + V + + + + L MP
Sbjct: 62 RL---STSKASHKPRILILTPTRELATQITTAVTKYGKFLR----VNIASLVGGMPYRQQ 114
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
+L+ P DI++ATPG + +S L ++++LVLDEAD +L G+ DD++ ++
Sbjct: 115 LRSLSKPVDIIVATPGRLLDHMSNRRLD----LSAIEMLVLDEADRMLDMGFIDDVQEIA 170
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNV-QQFWISCS 265
P Q LL SAT + + +L NP ++ +++ P + Q+ +++ +
Sbjct: 171 RATPASRQTLLFSATVDKRLSHIINRLLKNPV-----QINFSNEQLTPVKISQELYMADN 225
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
+ K+ +L ++ + KA+IF+ T A +L L G SA L+ +L QN R
Sbjct: 226 PQHKMRLLLHFVQ-DKKMFKAIIFSATKINADKLAGELSNQGYASAPLHGDLKQNVRNRT 284
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
LE+ +L+ATD RGID +++
Sbjct: 285 LEQLRRSKIQFLVATD---------------------------------VAARGIDVEDI 311
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
VIN+++P+ + YVHRIGRTGRA +G ++SL + + E I+ F+
Sbjct: 312 THVINYDLPKFSEDYVHRIGRTGRAGKSGTAISLALASDRRHIERIERFMN 362
>gi|238484285|ref|XP_002373381.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus flavus
NRRL3357]
gi|317140428|ref|XP_001818181.2| ATP-dependent RNA helicase drs1 [Aspergillus oryzae RIB40]
gi|91206589|sp|Q2UQI6.2|DRS1_ASPOR RecName: Full=ATP-dependent RNA helicase drs1
gi|220701431|gb|EED57769.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus flavus
NRRL3357]
gi|391871961|gb|EIT81110.1| ATP-dependent RNA helicase [Aspergillus oryzae 3.042]
Length = 820
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 156/522 (29%), Positives = 242/522 (46%), Gaps = 92/522 (17%)
Query: 13 KQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKT 72
+Q E+ A +KSF+E L ++ L PT IQ+ +IP+ L GKD+V A T
Sbjct: 289 EQTSEQSAAELSKKSFQEFNLSRPILRGLAAVNFTNPTPIQRKTIPVALLGKDIVGSAVT 348
Query: 73 GSGKTFAYLLPLLHRLF--NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQV 130
GSGKT A+++P+L RL P S++A +L+PTREL Q Y+ L
Sbjct: 349 GSGKTAAFVVPILERLLFRPRKVPTSRVA----ILMPTRELAVQCYNVATKLATYT---- 400
Query: 131 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDE 189
+ QL + L PD++IATPG + S SF+ D+L+ILVLDE
Sbjct: 401 DITFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRN----SASFTVDTLEILVLDE 456
Query: 190 ADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVK 249
AD +L G+ D+L + IP+ Q +L SAT + VDKL ++ L+ P L + D K
Sbjct: 457 ADRMLEDGFADELNEILTTIPKSRQTMLFSATMTDSVDKLIRVGLNRPVRLMV----DSK 512
Query: 250 DEVIPKNVQQF-WISCSERDKLL-YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFG 307
+Q+F + DK L Y+L L K E+ + ++F A R+++ G
Sbjct: 513 KNTSMNLIQEFVRLRPGREDKRLGYLLHLCK-EVYTGRVIVFFRQKKEAHRVRIAFGLLG 571
Query: 308 IKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPK 367
+K+A L+ + Q R+ +E F G +L+ATD
Sbjct: 572 LKAAELHGSMSQEQRIRSVENFREGKVSFLLATD-------------------------- 605
Query: 368 AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 427
RG+D K V TVIN+E PQ+ Y+HR+GRT RA +G + ++ + + K+
Sbjct: 606 -------LAARGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKV 658
Query: 428 FEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQ---DL 484
+ AV++ + + VA V AV + AQ DL
Sbjct: 659 V-------------------------KAAVKASKAQGAKVASRVVDPAVADRWAQKAKDL 693
Query: 485 RNEI---LNSEKL-----KAHFEVNPKDLDLLKHDKDLSKKP 518
EI L EK+ +A +V + +++KH+ ++ +P
Sbjct: 694 EEEINAVLEEEKIEKQLAQAEMQVT-RSENMIKHEAEIMSRP 734
>gi|348569354|ref|XP_003470463.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
[Cavia porcellus]
Length = 455
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 132/418 (31%), Positives = 215/418 (51%), Gaps = 53/418 (12%)
Query: 20 AEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFA 79
AE EE K+F++LG+ L A ++ G KPT IQ +IP+ L+G+D++ A+TGSGKT A
Sbjct: 17 AEEEETKTFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPMALQGRDIIGLAETGSGKTGA 76
Query: 80 YLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTS 139
+ LP+L+ L +P+ ALVL PTREL Q+ + AL + ++ +
Sbjct: 77 FALPILNALLE--TPQRLF---ALVLTPTRELAFQISEQFEAL----GSSIGVQCAVIVG 127
Query: 140 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGY 198
+ + ALA P IVIATPG + L +K F+ +LK LV+DEAD +L+ +
Sbjct: 128 GIDSMSQSLALAKKPHIVIATPGRLIDHLE----NTKGFNLRALKYLVMDEADRILNMDF 183
Query: 199 EDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ 258
E ++ + VIPR + L SAT + V KL++ L NP + K + + K +Q
Sbjct: 184 ETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVEK-LQ 238
Query: 259 QFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELP 318
Q+++ + K Y++ +L EL +IF +T + R L L G + L+ ++
Sbjct: 239 QYYLFIPSKFKDTYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMS 297
Query: 319 QNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVR 378
Q+ RL L +F A L+ATD R
Sbjct: 298 QSKRLGSLNKFKAKARSILLATDVAS---------------------------------R 324
Query: 379 GIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
G+D +V V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+ +G
Sbjct: 325 GLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG 382
>gi|142982528|sp|A2QAX7.1|DRS1_ASPNC RecName: Full=ATP-dependent RNA helicase drs1
gi|134055839|emb|CAK37361.1| unnamed protein product [Aspergillus niger]
Length = 824
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 154/506 (30%), Positives = 237/506 (46%), Gaps = 73/506 (14%)
Query: 18 EEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKT 77
E A A+ ++SF+E L ++ L PT IQ+ +IP+ L GKD+V A TGSGKT
Sbjct: 301 ESAMADAKRSFQEFNLSRPILRGLAGVNFSNPTPIQRKTIPVALLGKDIVGSAVTGSGKT 360
Query: 78 FAYLLPLLHRLF--NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVV 135
A+++P+L RL P S++A +L+PTREL Q Y+ L +
Sbjct: 361 AAFVVPILERLLFRPRKVPTSRVA----ILMPTRELAVQCYNVATKLATYT----DITFC 412
Query: 136 QLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLL 194
QL + L PD++IATPG + S SF+ D+L+ILVLDEAD +L
Sbjct: 413 QLVGGFSLREQENILKKRPDVIIATPGRFIDHMRN----SASFTVDTLEILVLDEADRML 468
Query: 195 SYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIP 254
G+ D+L + IP+ Q +L SAT + VDKL ++ L+ P L + D K
Sbjct: 469 EDGFADELNEILTTIPKSRQTMLFSATMTDTVDKLIRVGLNRPVRLMV----DAKKNTAV 524
Query: 255 KNVQQF-WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAIL 313
VQ+F + DK L L L E+ + ++F A R+++ G+K+A L
Sbjct: 525 TLVQEFVRLRPGREDKRLGYLLYLCKEIYTGRVIVFFRQKKEAHRVRIIFGLLGLKAAEL 584
Query: 314 NAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSE 373
+ + Q +E F G +L+ATD L S
Sbjct: 585 HGSMSQE---QSVENFREGKAAFLLATD----------------------------LAS- 612
Query: 374 FGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS-PDEMKIFEEIK 432
RG+D K V TVIN+E PQ+ Y+HR+GRT RA +G + ++ + PD + +K
Sbjct: 613 ----RGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAAVK 668
Query: 433 SFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSE 492
+ S +I P +S +AE++A V ++ L E L +
Sbjct: 669 AGKSQGAKIASRVIEP------AVADSWAAKAEELADEVEEV---------LSEEKLEKQ 713
Query: 493 KLKAHFEVNPKDLDLLKHDKDLSKKP 518
+A +V K +L+KH+ ++ +P
Sbjct: 714 LAQAEMQVT-KGENLIKHEAEIKSRP 738
>gi|295107314|emb|CBL04857.1| Superfamily II DNA and RNA helicases [Gordonibacter pamelaeae
7-10-1-b]
Length = 445
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 134/410 (32%), Positives = 206/410 (50%), Gaps = 50/410 (12%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
+F++LGL + A+ + G PT +Q+ +IPL LEG+DVVA A TG+GKT A+ LP++
Sbjct: 36 TFQDLGLSETTLAAVAQMGYNAPTPVQEQAIPLALEGRDVVAAAVTGTGKTTAFALPVIE 95
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
R+ P S P ALV+ PTREL Q+ + A +L KG L+VV + +P
Sbjct: 96 RIDRAKKPGS---PRALVVSPTRELALQIDA---ACTQLAKGS-GLRVVTVVGGVPYKGQ 148
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
+ L+ DI++ATPG + + G ++ + ++ILVLDEAD +L G+ +K +
Sbjct: 149 LSKLSRGVDILVATPGRLHDLMERGDVKLRD----VEILVLDEADRMLDMGFWPTMKKIV 204
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
A P Q LL SAT V + IL +P + + G+ D ++QF +
Sbjct: 205 AATPSSRQTLLFSATLDRKVMQSVSAILRDPAFVEVAHKGETSD-----TIEQFIVPVGS 259
Query: 267 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
K +L LL E K+ ++FT+T A L++ G ++ ++++ Q R L
Sbjct: 260 MQKA-SLLRLLLAERGSKRVIVFTDTKTRAEICTGQLKRAGFRAESIHSDKTQAQRKRAL 318
Query: 327 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 386
F+ G D L+ATD + RGID ++
Sbjct: 319 AAFSKGDVDVLVATDV---------------------------------LARGIDVPDIA 345
Query: 387 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
V+N+E+P+N YVHRIGRTGRA G S+S VSP+ +I+ +G
Sbjct: 346 YVVNYELPENPDDYVHRIGRTGRAGEAGCSISFVSPEAKAQLLDIEKLLG 395
>gi|355683275|gb|AER97071.1| DEAD box polypeptide 27 [Mustela putorius furo]
Length = 712
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 140/417 (33%), Positives = 200/417 (47%), Gaps = 49/417 (11%)
Query: 17 EEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGK 76
E+ ++ +E SF+++ L L+ A+ G ++PT IQ+A IP+ L GKD+ A A TG+GK
Sbjct: 177 EDASQYDENLSFQDMNLSRPLLKAITTMGFKQPTPIQKACIPVGLLGKDICACAATGTGK 236
Query: 77 TFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQ 136
T A+ LP+L RL + P+ L+LVPTREL QV+S L + C L V
Sbjct: 237 TAAFALPVLERLIYK--PRQAPVTRVLILVPTRELGIQVHSVTKQLAQFCSITTCLAVGG 294
Query: 137 LTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLS 195
L + LRAA PDI+IATPG + L SF S+++L+LDEAD +L
Sbjct: 295 LDVKSQEAALRAA----PDILIATPGRLIDHLHN----CPSFHLSSIEVLILDEADRMLD 346
Query: 196 YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK 255
+E+ +K + + Q +L SAT + +V L + L NP + + + +V P
Sbjct: 347 EYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFV----NSNTDVAPF 402
Query: 256 NVQQFW-ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILN 314
Q+F I + I+ L ++FT T A R+ + L G++ L+
Sbjct: 403 LRQEFIRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELH 462
Query: 315 AELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEF 374
L Q RL L F D L+ATD
Sbjct: 463 GNLSQTQRLEALRRFKDEQIDILVATD--------------------------------- 489
Query: 375 GVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 431
RG+D + V TVINF MP YVHR+GRT RA G SVSLV +E K+ +EI
Sbjct: 490 VAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEI 546
>gi|229526303|ref|ZP_04415707.1| ATP-dependent RNA helicase [Vibrio cholerae bv. albensis VL426]
gi|229336461|gb|EEO01479.1| ATP-dependent RNA helicase [Vibrio cholerae bv. albensis VL426]
Length = 452
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 134/415 (32%), Positives = 211/415 (50%), Gaps = 49/415 (11%)
Query: 23 EEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLL 82
E F++LGLD RL+ L ++ T IQQ +IPL + G+D++A +KTGSGKT A++L
Sbjct: 2 ESTLQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVL 61
Query: 83 PLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMP 142
P+LH+ + +K P L+LVPTREL +QVY E+ +++ G + +T
Sbjct: 62 PMLHKSLKTKAFSAK-DPRGLILVPTRELAKQVYGELRSML----GGLSYTATLITGGEN 116
Query: 143 ASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 202
+D ALA P ++ATPG + L L F + L+ LVLDEAD +L G+ +L
Sbjct: 117 FNDQVKALARGPRFIVATPGRLADHLDHRSL----FLEGLETLVLDEADRMLDLGFAKEL 172
Query: 203 KAL-SAVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF 260
+ + +A R Q L+ SAT +DV+ + +L+ P + +G +E K++ Q
Sbjct: 173 RRIHNAAKHRRRQTLMFSATLDHADVNDMAMELLNEPKRIA---IGVGSEE--HKDITQH 227
Query: 261 WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 320
+ C D +L + + ++ +IFT T RL L + +K+ L+ L Q
Sbjct: 228 FYLCDHLDHKEALLDRILADAEYRQVIIFTATRADTDRLTEKLNQSNLKAVALSGNLNQT 287
Query: 321 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 380
R I+ +F +F L+ TD RG+
Sbjct: 288 QRNTIMGQFERAVFKILVTTDVAS---------------------------------RGL 314
Query: 381 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
D V VINF+MP++ YVHR+GRTGRA N G ++SLV P + + F+ +++F+
Sbjct: 315 DIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKRVEAFL 369
>gi|53718749|ref|YP_107735.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei K96243]
gi|53725492|ref|YP_103512.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344]
gi|67643786|ref|ZP_00442529.1| dead/deah box helicase [Burkholderia mallei GB8 horse 4]
gi|121599991|ref|YP_992380.1| DEAD/DEAH box helicase [Burkholderia mallei SAVP1]
gi|124383787|ref|YP_001026818.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229]
gi|126449417|ref|YP_001079898.1| DEAD/DEAH box helicase [Burkholderia mallei NCTC 10247]
gi|126454058|ref|YP_001065480.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106a]
gi|134281039|ref|ZP_01767748.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 305]
gi|167893438|ref|ZP_02480840.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 7894]
gi|217419830|ref|ZP_03451336.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 576]
gi|242317719|ref|ZP_04816735.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106b]
gi|386862473|ref|YP_006275422.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1026b]
gi|403517911|ref|YP_006652044.1| DEAD/DEAH box helicase [Burkholderia pseudomallei BPC006]
gi|418390012|ref|ZP_12967823.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 354a]
gi|418538110|ref|ZP_13103738.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1026a]
gi|418541611|ref|ZP_13107086.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1258a]
gi|418547854|ref|ZP_13112990.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1258b]
gi|418554032|ref|ZP_13118832.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 354e]
gi|52209163|emb|CAH35107.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
K96243]
gi|52428915|gb|AAU49508.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344]
gi|121228801|gb|ABM51319.1| DEAD/DEAH box helicase [Burkholderia mallei SAVP1]
gi|124291807|gb|ABN01076.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229]
gi|126227700|gb|ABN91240.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106a]
gi|126242287|gb|ABO05380.1| DEAD/DEAH box helicase [Burkholderia mallei NCTC 10247]
gi|134247345|gb|EBA47430.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 305]
gi|217397134|gb|EEC37150.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 576]
gi|238525219|gb|EEP88647.1| dead/deah box helicase [Burkholderia mallei GB8 horse 4]
gi|242140958|gb|EES27360.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106b]
gi|385348870|gb|EIF55466.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1026a]
gi|385357533|gb|EIF63583.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1258a]
gi|385359528|gb|EIF65484.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1258b]
gi|385370979|gb|EIF76201.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 354e]
gi|385375790|gb|EIF80532.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 354a]
gi|385659601|gb|AFI67024.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1026b]
gi|403073554|gb|AFR15134.1| DEAD/DEAH box helicase [Burkholderia pseudomallei BPC006]
Length = 482
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 132/416 (31%), Positives = 212/416 (50%), Gaps = 54/416 (12%)
Query: 25 EKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPL 84
+ +F++ GL ++ A+ ++G PT IQ +IP++L G+DV+ A+TG+GKT ++ LP+
Sbjct: 10 DATFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPI 69
Query: 85 LHRLF---NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELC--KGQVQLKVVQLTS 139
+ RL N S+ ++ AL+L PTREL QV + V A + + V V +
Sbjct: 70 IQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNP 129
Query: 140 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE 199
M ++LR + +I+IATPG L V Q + ++ILVLDEAD +L G+
Sbjct: 130 QM--AELRRGV----EILIATPG----RLLDHVQQKTANLGQVQILVLDEADRMLDMGFL 179
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
DL+ + ++P+ Q LL SAT S ++ KL L NP + + + V Q
Sbjct: 180 PDLQRILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEV-----ARSNAAASTVTQ 234
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+E DK ++ L++ + K+ ++F N+ A RL +E+ GI +A ++ + Q
Sbjct: 235 IVYDVAEGDKQAAVVKLIR-DRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQ 293
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
+ R+ L+ F G + L+ATD RG
Sbjct: 294 SERMQALDAFKRGEIEALVATDVA---------------------------------ARG 320
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+D + VINF++P NA YVHRIGRTGRA +G ++SL SP+E K +I+ +
Sbjct: 321 LDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLADIEKLI 376
>gi|26450667|dbj|BAC42444.1| putative replication protein A1 [Arabidopsis thaliana]
gi|28951031|gb|AAO63439.1| At5g60990 [Arabidopsis thaliana]
Length = 456
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 139/427 (32%), Positives = 208/427 (48%), Gaps = 57/427 (13%)
Query: 19 EAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTF 78
E E E K+F ELG+ LV A + G + P+ IQ ++P LEGKDV+ A+TGSGKT
Sbjct: 2 EEENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTG 61
Query: 79 AYLLPLLHRLFN---ESSPKSKLAP----AALVLVPTRELCQQVYSEVMALIELCKGQVQ 131
A+ +P+L L +S PK P A VL PTREL Q+ + AL +
Sbjct: 62 AFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEAL----GADIS 117
Query: 132 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEA 190
L+ L + AL P +++ATPG + +S +K FS SLK LVLDEA
Sbjct: 118 LRCAVLVGGIDRMQQTIALGKRPHVIVATPGRLWDHMS----DTKGFSLKSLKYLVLDEA 173
Query: 191 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD 250
D LL+ +E L + IP + L SAT + V KL++ L NP + E
Sbjct: 174 DRLLNEDFEKSLNQILEEIPLERETFLFSATMTKKVRKLQRACLRNPVKI---EAASKYS 230
Query: 251 EVIPKNVQQFWISCSERD-KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIK 309
V Q +++ +D L+YIL+ E+ + ++IFT T D L L L G +
Sbjct: 231 TVDTLKQQYRFVAAKYKDCYLVYILS----EMPESTSMIFTRTCDGTRFLALVLRSLGFR 286
Query: 310 SAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAK 369
+ ++ ++ Q+ RL L +F AG + L+ TD
Sbjct: 287 AIPISGQMTQSKRLGALNKFKAGECNILVCTDVAS------------------------- 321
Query: 370 LDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFE 429
RG+D +V VIN+++P N+ Y+HR+GRT RA +G +SLV+ E++ +
Sbjct: 322 --------RGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQYELEWYI 373
Query: 430 EIKSFVG 436
+I+ +G
Sbjct: 374 QIEKLIG 380
>gi|350290558|gb|EGZ71772.1| DEAD-domain-containing protein [Neurospora tetrasperma FGSC 2509]
Length = 865
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 139/429 (32%), Positives = 213/429 (49%), Gaps = 52/429 (12%)
Query: 24 EEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLP 83
E SF+E+ L ++ L G KPT IQ +IP+ L GKDVV A TGSGKT A+++P
Sbjct: 292 EMASFQEMSLSRPILRGLTSVGFTKPTPIQAKTIPISLMGKDVVGGAVTGSGKTAAFVVP 351
Query: 84 LLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPA 143
+L RL PK ++L PTREL Q ++ + L + L V L+ +
Sbjct: 352 ILERLLYR--PKKVPTTRVVILTPTRELAIQCHAVAVKLASHTDIKFCLAVGGLSLKVQE 409
Query: 144 SDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDL 202
++LR PD+VIATPG + S SF+ D+++ILVLDEAD +L G+ D+L
Sbjct: 410 AELRLR----PDVVIATPGRFIDHMR----NSASFAVDTIEILVLDEADRMLEDGFADEL 461
Query: 203 KALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-- 260
+ +P+ Q +L SAT +S VD+L + L+ P + + D + + VQ+F
Sbjct: 462 NEILTTLPKSRQTMLFSATMTSSVDRLIRAGLNKPVRI----MADSQKKTAGTLVQEFVR 517
Query: 261 WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 320
E + Y+L + K + ++ +IF +A ++++ FG+ A L+ + Q
Sbjct: 518 LRPGRESKREGYLLHICKT-IYTERVIIFFRQKKIAHKMRIIFGLFGLSCAELHGSMNQA 576
Query: 321 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 380
R+ +E+F G ++L+ATD L S RG+
Sbjct: 577 QRIQSVEDFRDGKVNFLLATD----------------------------LAS-----RGL 603
Query: 381 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS-PDEMKIFEEIKSFVGDDE 439
D K V TVIN+E PQ YVHR+GRT RA +G +++L + PD + +K+
Sbjct: 604 DIKGVDTVINYEAPQTPEIYVHRVGRTARAGRSGTAITLAAEPDRKVVKAAVKAGKSQGA 663
Query: 440 NEDSNIIAP 448
S II P
Sbjct: 664 KISSRIIDP 672
>gi|83766036|dbj|BAE56179.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 856
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 156/522 (29%), Positives = 242/522 (46%), Gaps = 92/522 (17%)
Query: 13 KQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKT 72
+Q E+ A +KSF+E L ++ L PT IQ+ +IP+ L GKD+V A T
Sbjct: 325 EQTSEQSAAELSKKSFQEFNLSRPILRGLAAVNFTNPTPIQRKTIPVALLGKDIVGSAVT 384
Query: 73 GSGKTFAYLLPLLHRLF--NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQV 130
GSGKT A+++P+L RL P S++A +L+PTREL Q Y+ L
Sbjct: 385 GSGKTAAFVVPILERLLFRPRKVPTSRVA----ILMPTRELAVQCYNVATKLATYT---- 436
Query: 131 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDE 189
+ QL + L PD++IATPG + S SF+ D+L+ILVLDE
Sbjct: 437 DITFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRN----SASFTVDTLEILVLDE 492
Query: 190 ADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVK 249
AD +L G+ D+L + IP+ Q +L SAT + VDKL ++ L+ P L + D K
Sbjct: 493 ADRMLEDGFADELNEILTTIPKSRQTMLFSATMTDSVDKLIRVGLNRPVRLMV----DSK 548
Query: 250 DEVIPKNVQQF-WISCSERDKLL-YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFG 307
+Q+F + DK L Y+L L K E+ + ++F A R+++ G
Sbjct: 549 KNTSMNLIQEFVRLRPGREDKRLGYLLHLCK-EVYTGRVIVFFRQKKEAHRVRIAFGLLG 607
Query: 308 IKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPK 367
+K+A L+ + Q R+ +E F G +L+ATD
Sbjct: 608 LKAAELHGSMSQEQRIRSVENFREGKVSFLLATD-------------------------- 641
Query: 368 AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 427
RG+D K V TVIN+E PQ+ Y+HR+GRT RA +G + ++ + + K+
Sbjct: 642 -------LAARGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKV 694
Query: 428 FEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQ---DL 484
+ AV++ + + VA V AV + AQ DL
Sbjct: 695 -------------------------VKAAVKASKAQGAKVASRVVDPAVADRWAQKAKDL 729
Query: 485 RNEI---LNSEKL-----KAHFEVNPKDLDLLKHDKDLSKKP 518
EI L EK+ +A +V + +++KH+ ++ +P
Sbjct: 730 EEEINAVLEEEKIEKQLAQAEMQVTRSE-NMIKHEAEIMSRP 770
>gi|350537559|ref|NP_001233477.1| probable ATP-dependent RNA helicase DDX47 [Pan troglodytes]
gi|343958142|dbj|BAK62926.1| apolipoprotein-L domain-containing protein 1 [Pan troglodytes]
gi|410264252|gb|JAA20092.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Pan troglodytes]
gi|410305384|gb|JAA31292.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Pan troglodytes]
gi|410329313|gb|JAA33603.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Pan troglodytes]
Length = 455
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 132/417 (31%), Positives = 214/417 (51%), Gaps = 53/417 (12%)
Query: 21 EAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAY 80
E EE K+F++LG+ L A ++ G KPT IQ +IPL L+G+D++ A+TGSGKT A+
Sbjct: 19 EKEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAF 78
Query: 81 LLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSS 140
LP+L+ L +P+ ALVL PTREL Q+ + AL + ++ +
Sbjct: 79 ALPILNALLE--TPQRLF---ALVLTPTRELAFQISEQFEAL----GSSIGVQSAVIVGG 129
Query: 141 MPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYE 199
+ + ALA P I+IATPG + L +K F+ +LK LV+DEAD +L+ +E
Sbjct: 130 IDSMSQSLALAKKPHIIIATPGRLIDHLE----NTKGFNLRALKYLVMDEADRILNMDFE 185
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
++ + VIPR + L SAT + V KL++ L NP + K + + K +QQ
Sbjct: 186 TEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVEK-LQQ 240
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
++I + K Y++ +L EL +IF +T + R L L G + L+ ++ Q
Sbjct: 241 YYIFIPSKFKDTYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQ 299
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
+ RL L +F A L+ATD RG
Sbjct: 300 SKRLGSLNKFKAKARSILLATDVAS---------------------------------RG 326
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
+D +V V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+ +G
Sbjct: 327 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG 383
>gi|374367571|ref|ZP_09625632.1| helicase [Cupriavidus basilensis OR16]
gi|373100874|gb|EHP41934.1| helicase [Cupriavidus basilensis OR16]
Length = 496
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 134/422 (31%), Positives = 215/422 (50%), Gaps = 62/422 (14%)
Query: 25 EKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPL 84
E +F+ GLD R+ AL+++G KPT IQ+ +IP++L+GKDV+ A+TG+GKT + LP+
Sbjct: 12 EITFDSFGLDARIQRALSEQGYTKPTPIQEQAIPVVLQGKDVMGAAQTGTGKTAGFALPI 71
Query: 85 LHRLFNESSPKSKLAPA-----ALVLVPTRELCQQVYSEVMALIELC--KGQVQLKVVQL 137
+ RL +S + +PA AL+L PTREL QVY V + V V +
Sbjct: 72 IQRLLPLAS--ASASPARHPVRALMLTPTRELADQVYDNVARYARFTDLRSTVVFGGVDM 129
Query: 138 TSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS-LKILVLDEADLLLSY 196
A LR + +I++ATPG + +Q KS + S +++LVLDEAD +L
Sbjct: 130 NPQTEA--LRRGV----EILVATPGRL-----LDHVQQKSVNLSQVQMLVLDEADRMLDM 178
Query: 197 GYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN 256
G+ DL+ + ++P Q LL SAT SS++ +L LH P + + + +N
Sbjct: 179 GFLPDLQRIINLLPAQRQTLLFSATFSSEIKRLAASYLHQPVTIEV-----ARSNSANEN 233
Query: 257 VQQFWISCSERDKLLYILTLLK---LELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAIL 313
V+Q + K ++ LLK E + ++ ++F N+ RL LE+ GI +A +
Sbjct: 234 VRQTVFQVEDGHKQAAVVHLLKKRAAEGLSRQCIVFVNSKIGCSRLARHLEREGINAAAI 293
Query: 314 NAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSE 373
+ + Q R+ L+ F G D L+ATD
Sbjct: 294 HGDKTQTERMQTLDGFKQGNIDALVATDV------------------------------- 322
Query: 374 FGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKS 433
RG+D ++ VINF++P +A Y+HRIGRTGRA +G ++S+ P + ++ +I+
Sbjct: 323 --AARGLDIPDMPCVINFDLPFSAEDYIHRIGRTGRAGASGDALSIYVPADERLLVDIEK 380
Query: 434 FV 435
+
Sbjct: 381 LL 382
>gi|208779218|ref|ZP_03246564.1| dead/deah box helicase domain protein [Francisella novicida FTG]
gi|208745018|gb|EDZ91316.1| dead/deah box helicase domain protein [Francisella novicida FTG]
Length = 441
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 128/410 (31%), Positives = 210/410 (51%), Gaps = 50/410 (12%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F +LGL+ + AL KKG KPT IQ +IP++L+G DV+A A+TG+GKT + LP++ R
Sbjct: 3 FSDLGLNSLICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQR 62
Query: 88 LFNESSPKSKLAPA-ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
L ++ PK++ L+L PTREL Q+ + I++ ++ + + +
Sbjct: 63 LLDQ--PKAQANRIKTLILTPTRELAAQIQEQ----IQIYAANTHIRSAVIFGGVSINPQ 116
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
L +I+IATPG + S ++ DSL VLDEAD +L G+ +DLK +
Sbjct: 117 MMKLRKGVEILIATPGRLLDLYSQNAVK----FDSLNTFVLDEADRMLDMGFINDLKKIH 172
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
++P+ Q L+ SAT SS++ L L+NP ++ DV + + K Q+ + + +
Sbjct: 173 KLLPKKLQTLMFSATFSSEIKNLANEFLNNPQFVS----ADVVNTTVKKITQKIY-TLDK 227
Query: 267 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
+K+ +++L+K + + + L+F+ T + A ++ L GI S+ ++ Q +R L
Sbjct: 228 SNKINALISLIKDQNLH-QVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKAL 286
Query: 327 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 386
+F + + L+ATD RGID +
Sbjct: 287 ADFKSNDINVLVATDIA---------------------------------ARGIDIAQLP 313
Query: 387 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
VIN ++P A YVHRIGRTGRA G ++SLVS DE++ I+ +G
Sbjct: 314 CVINLDLPNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSNIEHLIG 363
>gi|397474910|ref|XP_003808899.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Pan paniscus]
Length = 455
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 132/417 (31%), Positives = 214/417 (51%), Gaps = 53/417 (12%)
Query: 21 EAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAY 80
E EE K+F++LG+ L A ++ G KPT IQ +IPL L+G+D++ A+TGSGKT A+
Sbjct: 19 EEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAF 78
Query: 81 LLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSS 140
LP+L+ L +P+ ALVL PTREL Q+ + AL + ++ +
Sbjct: 79 ALPILNALLE--TPQRLF---ALVLTPTRELAFQISEQFEAL----GSSIGVQSAVIVGG 129
Query: 141 MPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYE 199
+ + ALA P I+IATPG + L +K F+ +LK LV+DEAD +L+ +E
Sbjct: 130 IDSMSQSLALAKKPHIIIATPGRLIDHLE----NTKGFNLRALKYLVMDEADRILNMDFE 185
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
++ + VIPR + L SAT + V KL++ L NP + K + + K +QQ
Sbjct: 186 TEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVEK-LQQ 240
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
++I + K Y++ +L EL +IF +T + R L L G + L+ ++ Q
Sbjct: 241 YYIFIPSKFKDTYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQ 299
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
+ RL L +F A L+ATD RG
Sbjct: 300 SKRLGSLNKFKAKARSILLATDVAS---------------------------------RG 326
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
+D +V V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+ +G
Sbjct: 327 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG 383
>gi|169609619|ref|XP_001798228.1| hypothetical protein SNOG_07902 [Phaeosphaeria nodorum SN15]
gi|143462316|sp|Q0UK12.2|RRP3_PHANO RecName: Full=ATP-dependent rRNA helicase RRP3
gi|160701880|gb|EAT84178.2| hypothetical protein SNOG_07902 [Phaeosphaeria nodorum SN15]
Length = 546
Score = 192 bits (488), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 134/414 (32%), Positives = 211/414 (50%), Gaps = 53/414 (12%)
Query: 25 EKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPL 84
+K+F +LG+ L A G + T IQ SIPL L GKD++ A+TGSGKT A++LP+
Sbjct: 114 KKTFADLGVREELCDACENLGYKTATPIQTESIPLALAGKDIIGLAETGSGKTAAFVLPI 173
Query: 85 LHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
L L ++ P++ L++ PTREL Q+ +V AL + + +K L M
Sbjct: 174 LQALLDK--PQAYF---GLIMAPTRELAYQISQQVDALGSI----INVKCATLVGGMDMV 224
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLK 203
AL+ P I++A+PG + L +K FS LK LVLDEAD LL + D L
Sbjct: 225 PQAIALSKRPHIIVASPGRLLDHLEN----TKGFSLKHLKYLVLDEADRLLDLDFGDSLD 280
Query: 204 ALSAVIPR-GCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWI 262
+ V+PR L SAT SS V+ L++ L NP ++ + +V+ +Q + +
Sbjct: 281 KIFKVLPRDDRHTYLFSATMSSKVESLQRAALKNPVRVS---ISSSSHQVVSTLLQSYML 337
Query: 263 SCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 322
+ K LY++ LL + + ++FT T++ RL + L G ++ L+ +L Q++R
Sbjct: 338 -IPHKYKDLYLIHLLN-DNIGHATILFTRTVNETQRLAVLLRTLGFQALPLHGQLSQSNR 395
Query: 323 LHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDF 382
L L +F A D L+ATD RG+D
Sbjct: 396 LGALNKFKAKARDILVATD---------------------------------VAARGLDI 422
Query: 383 KNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
+V V+NF++P ++ YVHR+GRT RA +G +VS V+ +++IF+ I+ +G
Sbjct: 423 PSVDLVVNFDLPHDSETYVHRVGRTARAGKSGKAVSFVTQYDLEIFQRIEHALG 476
>gi|169598332|ref|XP_001792589.1| hypothetical protein SNOG_01967 [Phaeosphaeria nodorum SN15]
gi|118595361|sp|Q0V1Z7.1|DRS1_PHANO RecName: Full=ATP-dependent RNA helicase DRS1
gi|111069059|gb|EAT90179.1| hypothetical protein SNOG_01967 [Phaeosphaeria nodorum SN15]
Length = 808
Score = 192 bits (488), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 142/498 (28%), Positives = 230/498 (46%), Gaps = 72/498 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF + L + L G +PT IQ +IP+ ++GKDVV A+TGSGKT A+L+P+L
Sbjct: 286 SFHAMSLSRPIQKGLAAIGFTEPTPIQAKAIPIAMQGKDVVGGAETGSGKTAAFLIPILE 345
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
RL PK + +PTREL Q ++ L + L + +
Sbjct: 346 RLL--YRPKKVPTTRVAIFMPTRELAVQCFNVATKLASFT----DITFALLAGGFSSREQ 399
Query: 147 RAALAGPPDIVIATPG-CMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL 205
L PD+VIATPG + +T Q + L+ILVLDEAD +L G+E L +
Sbjct: 400 EVMLKTRPDVVIATPGRFIDHMHNTAAFQ----VEHLEILVLDEADRMLEEGFETQLNEI 455
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW-ISC 264
IP+ Q +L SAT +S VDKL ++ + P L + D K + Q+F +
Sbjct: 456 LTTIPKSRQTMLFSATMTSTVDKLIRIGMDKPVRLMV----DAKKHTVKGLTQEFIRLRQ 511
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
+ DK L L + ++ ++ +IF A R+++ G+K++ L+ + Q R+
Sbjct: 512 GKEDKRLAYLMYICEKIYTERVIIFFRQKKEAHRVRVVFALCGLKASELHGNMSQEQRIQ 571
Query: 325 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 384
+E F +G YL+ATD RG+D KN
Sbjct: 572 AVEAFRSGKSSYLLATDVAS---------------------------------RGLDIKN 598
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSN 444
V TVIN+E PQ+ Y+HR+GRT RA +G + +L + + K+ +K V ++ S
Sbjct: 599 VSTVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKV---VKQAVKQSRDQGSK 655
Query: 445 IIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKD 504
++ S + E+ + + K+ E +D +L EK + + +D
Sbjct: 656 VV------------SRQVPVEETDRWMEKLRGLEDEIED----VLKEEKEERTLSITERD 699
Query: 505 L----DLLKHDKDLSKKP 518
L +L++H+ ++ +P
Sbjct: 700 LKRGMNLIEHEAEIKSRP 717
>gi|11121196|emb|CAC14786.1| DEAD box protein [Homo sapiens]
Length = 455
Score = 192 bits (488), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 133/424 (31%), Positives = 217/424 (51%), Gaps = 53/424 (12%)
Query: 14 QAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTG 73
+A + E EE K+F++LG+ L A ++ G KPT IQ +IPL L+G+D++ A+TG
Sbjct: 12 EASQPIVEEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETG 71
Query: 74 SGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLK 133
SGKT A+ LP+L+ L +P+ ALVL PTREL Q+ + AL + ++
Sbjct: 72 SGKTGAFALPILNALLE--TPQRLF---ALVLTPTRELAFQISEQFEAL----GSSIGVQ 122
Query: 134 VVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADL 192
+ + + ALA P I+IATPG + L +K F+ +LK LV+DEAD
Sbjct: 123 SAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLE----NTKGFNLRALKYLVMDEADR 178
Query: 193 LLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEV 252
+L+ +E ++ + VIPR + L SAT + V KL++ L NP + K +
Sbjct: 179 ILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQT 234
Query: 253 IPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAI 312
+ K +QQ++I + K Y++ +L EL +IF +T + R L L G +
Sbjct: 235 VEK-LQQYYIFIPSKFKDTYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIP 292
Query: 313 LNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDS 372
L+ ++ Q+ RL L +F A L+ATD
Sbjct: 293 LHGQMSQSKRLGSLNKFKAKESSILLATDVAS---------------------------- 324
Query: 373 EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432
RG+D +V V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+
Sbjct: 325 -----RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIE 379
Query: 433 SFVG 436
+G
Sbjct: 380 HLIG 383
>gi|325982424|ref|YP_004294826.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas sp.
AL212]
gi|325531943|gb|ADZ26664.1| DEAD/DEAH box helicase domain protein [Nitrosomonas sp. AL212]
Length = 476
Score = 192 bits (488), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 139/415 (33%), Positives = 208/415 (50%), Gaps = 54/415 (13%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SFE+LGL L+ A++++G PT IQQ +IP+IL+G DV+ A+TG+GKT + LP+L
Sbjct: 6 SFEQLGLSTDLLRAISEQGYTNPTPIQQQAIPIILKGFDVMGGAQTGTGKTAGFTLPMLQ 65
Query: 87 RLFNESSPKSKLAPA-----ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSM 141
+L ES S +PA AL+LVPTREL QVY V A V LK + +
Sbjct: 66 KL--ESHANSSTSPAKHPTRALILVPTRELAIQVYESVRA----YGKYVALKSAVIYDGV 119
Query: 142 PASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDD 201
AA+ +I++ATPG + L Q ++IL+LDEAD +L G+ D
Sbjct: 120 NIDVQIAAIRSGVEILVATPGRLLDHLQ----QKNLILSKIEILILDEADRMLDMGFLPD 175
Query: 202 LKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW 261
+K + ++P Q L+ SAT S ++ KL IL +P ++ + + V D +
Sbjct: 176 IKQIIQMLPDQRQNLMFSATFSEEIKKLAGKILKSPILIEVAKQNSVSDL-----ISHIV 230
Query: 262 ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 321
S ++K +++ ++K + +Q + LIFT T A L L I S++++ + Q
Sbjct: 231 YSVESKNKQEFLIDMIKKKNLQ-QVLIFTRTKHGADHLAQKLNSRDILSSVIHGDRNQLQ 289
Query: 322 RLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGID 381
R L+ F GL L+ATD RG+D
Sbjct: 290 RTQALDNFKCGLIRILVATDVA---------------------------------ARGLD 316
Query: 382 FKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
+ + VINFE+P N YVHRIGRTGRA G ++S VS +E + I+ +G
Sbjct: 317 IEELTHVINFELPNNPEDYVHRIGRTGRAGAKGFAISFVSREETVLLGGIERLLG 371
>gi|16549139|dbj|BAB70762.1| unnamed protein product [Homo sapiens]
Length = 455
Score = 192 bits (488), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 132/424 (31%), Positives = 217/424 (51%), Gaps = 53/424 (12%)
Query: 14 QAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTG 73
+A + E EE K+F++LG+ L A ++ G KPT IQ ++PL L+G+D++ A+TG
Sbjct: 12 EASQPIVEEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAVPLALQGRDIIGLAETG 71
Query: 74 SGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLK 133
SGKT A+ LP+L+ L +P+ ALVL PTREL Q+ + AL + ++
Sbjct: 72 SGKTGAFALPILNALLE--TPQRLF---ALVLTPTRELAFQISEQFEAL----GSSIGVQ 122
Query: 134 VVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADL 192
+ + + ALA P I+IATPG + L +K F+ +LK LV+DEAD
Sbjct: 123 SAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLE----NTKGFNLRALKYLVMDEADR 178
Query: 193 LLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEV 252
+L+ +E ++ + VIPR + L SAT + V KL++ L NP + K +
Sbjct: 179 ILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQT 234
Query: 253 IPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAI 312
+ K +QQ++I + K Y++ +L EL +IF +T + R L L G +
Sbjct: 235 VEK-LQQYYIFIPSKFKDTYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIP 292
Query: 313 LNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDS 372
L+ ++ Q+ RL L +F A L+ATD
Sbjct: 293 LHGQMSQSKRLGSLNKFKAKARSILLATDVAS---------------------------- 324
Query: 373 EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432
RG+D +V V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+
Sbjct: 325 -----RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIE 379
Query: 433 SFVG 436
+G
Sbjct: 380 HLIG 383
>gi|15422163|gb|AAK95821.1| RNA helicase-like protein [Homo sapiens]
Length = 796
Score = 192 bits (488), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 141/417 (33%), Positives = 199/417 (47%), Gaps = 49/417 (11%)
Query: 17 EEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGK 76
E+ ++ +E SF+++ L L+ A+ G ++PT IQ+A IP+ L GKD+ A A TG+GK
Sbjct: 209 EDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGK 268
Query: 77 TFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQ 136
T A+ LP+L RL + P+ LVLVPTREL QV+S L + C L V
Sbjct: 269 TAAFALPVLERLIYK--PRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGG 326
Query: 137 LTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLS 195
L + LRAA PDI+IATPG + L SF S+++L+LDEAD +L
Sbjct: 327 LDVKSQEAALRAA----PDILIATPGRLIDHLHN----CPSFHLSSIEVLILDEADRMLD 378
Query: 196 YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK 255
+E+ +K + + Q +L SAT + +V L + L NP + + + +V P
Sbjct: 379 EYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFV----NSNTDVAPF 434
Query: 256 NVQQFW-ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILN 314
Q+F I + I+ L ++FT T A R+ + L G++ L+
Sbjct: 435 LRQEFIRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELH 494
Query: 315 AELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEF 374
L Q RL L F D L+ATD
Sbjct: 495 GNLSQTQRLEALRRFKDEQIDILVATD--------------------------------- 521
Query: 375 GVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 431
RG+D + V TVINF MP Y HR+GRT RA G SVSLV DE K+ +EI
Sbjct: 522 VAARGLDIEGVKTVINFTMPNTIKHYDHRVGRTARAGRAGRSVSLVGEDERKMLKEI 578
>gi|126442203|ref|YP_001058242.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 668]
gi|167901897|ref|ZP_02489102.1| DEAD/DEAH box helicase [Burkholderia pseudomallei NCTC 13177]
gi|237811490|ref|YP_002895941.1| dead/deah box helicase [Burkholderia pseudomallei MSHR346]
gi|126221696|gb|ABN85202.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 668]
gi|237505268|gb|ACQ97586.1| dead/deah box helicase [Burkholderia pseudomallei MSHR346]
Length = 481
Score = 192 bits (488), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 132/416 (31%), Positives = 212/416 (50%), Gaps = 54/416 (12%)
Query: 25 EKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPL 84
+ +F++ GL ++ A+ ++G PT IQ +IP++L G+DV+ A+TG+GKT ++ LP+
Sbjct: 10 DATFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPI 69
Query: 85 LHRLF---NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELC--KGQVQLKVVQLTS 139
+ RL N S+ ++ AL+L PTREL QV + V A + + V V +
Sbjct: 70 IQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNP 129
Query: 140 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE 199
M ++LR + +I+IATPG L V Q + ++ILVLDEAD +L G+
Sbjct: 130 QM--AELRRGV----EILIATPG----RLLDHVQQKTANLGQVQILVLDEADRMLDMGFL 179
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
DL+ + ++P+ Q LL SAT S ++ KL L NP + + + V Q
Sbjct: 180 PDLQRILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEV-----ARSNAAASTVTQ 234
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+E DK ++ L++ + K+ ++F N+ A RL +E+ GI +A ++ + Q
Sbjct: 235 IVYDVAEGDKQAAVVKLIR-DRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQ 293
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
+ R+ L+ F G + L+ATD RG
Sbjct: 294 SERMQALDAFKRGEIEALVATDVA---------------------------------ARG 320
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+D + VINF++P NA YVHRIGRTGRA +G ++SL SP+E K +I+ +
Sbjct: 321 LDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLADIEKLI 376
>gi|10434683|dbj|BAB14343.1| unnamed protein product [Homo sapiens]
Length = 765
Score = 192 bits (488), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 141/417 (33%), Positives = 199/417 (47%), Gaps = 49/417 (11%)
Query: 17 EEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGK 76
E+ ++ +E SF+++ L L+ A+ G ++PT IQ+A IP+ L GKD+ A A TG+GK
Sbjct: 178 EDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGK 237
Query: 77 TFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQ 136
T A+ LP+L RL + P+ LVLVPTREL QV+S L + C L V
Sbjct: 238 TAAFALPVLERLIYK--PRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGG 295
Query: 137 LTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLS 195
L + LRAA PDI+IATPG + L SF S+++L+LDEAD +L
Sbjct: 296 LDVKSQEAALRAA----PDILIATPGRLIDHLHN----CPSFHLSSIEVLILDEADRMLD 347
Query: 196 YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK 255
+E+ +K + + Q +L SAT + +V L + L NP + + + +V P
Sbjct: 348 EYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFV----NSNTDVAPF 403
Query: 256 NVQQFW-ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILN 314
Q+F I + I+ L ++FT T A R+ + L G++ L+
Sbjct: 404 LRQEFIRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELH 463
Query: 315 AELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEF 374
L Q RL L F D L+ATD
Sbjct: 464 GNLSQTQRLEALRRFKDEQIDILVATD--------------------------------- 490
Query: 375 GVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 431
RG+D + V TVINF MP Y HR+GRT RA G SVSLV DE K+ +EI
Sbjct: 491 VAARGLDIEGVKTVINFTMPNTIKHYDHRVGRTARAGRAGRSVSLVGEDERKMLKEI 547
>gi|114563615|ref|YP_751128.1| DEAD/DEAH box helicase [Shewanella frigidimarina NCIMB 400]
gi|114334908|gb|ABI72290.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
NCIMB 400]
Length = 451
Score = 192 bits (488), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 133/410 (32%), Positives = 207/410 (50%), Gaps = 49/410 (11%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F + LD RL+ +L GI PT +Q ++P+ L GKD++A +KTGSGKT A+LLP + R
Sbjct: 3 FTDFSLDKRLLDSLKHLGISTPTDVQAQALPIALSGKDLMASSKTGSGKTLAFLLPAMQR 62
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+ + + SK P L+L+PTREL QQVY ++ L+ Q K + + +D
Sbjct: 63 VIS-TRALSKKDPRVLILLPTRELAQQVYGQLRLLV----ANTQYKAISVLGGENFNDQA 117
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS- 206
ALA P ++ATPG + L Q + + L++LVLDEAD +L G+ LKA++
Sbjct: 118 KALARDPHFIVATPGRIADHLQ----QRHLYLNGLELLVLDEADRMLDLGFAPQLKAIND 173
Query: 207 AVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
A + Q L+ SAT + + + +L +P ++ +G+ E K+++Q I
Sbjct: 174 AADHKRRQTLMFSATLDHNSIGDIATTLLKSPSHVS---IGESYTE--HKDIEQRIILVD 228
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
D +L + + K+ ++FT T RL L G ++ L+ +L Q++R I
Sbjct: 229 HLDHKQAVLQHILSQETHKQVIVFTATRSDTDRLATLLAAQGFATSALSGDLKQSARNQI 288
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
+++F G L+ TD RG+D NV
Sbjct: 289 MDQFARGQSQILVTTDVAS---------------------------------RGLDLINV 315
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
VINF+MP+ A YVHRIGRTGRA G +VS V P + F++++ F+
Sbjct: 316 SLVINFDMPKFAEEYVHRIGRTGRAGAKGDAVSFVGPKDWDSFKKVQLFL 365
>gi|343502139|ref|ZP_08739999.1| ATP-dependent RNA helicase [Vibrio tubiashii ATCC 19109]
gi|418479314|ref|ZP_13048397.1| ATP-dependent RNA helicase RhlE [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
gi|342815415|gb|EGU50334.1| ATP-dependent RNA helicase [Vibrio tubiashii ATCC 19109]
gi|384573053|gb|EIF03556.1| ATP-dependent RNA helicase RhlE [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
Length = 398
Score = 192 bits (488), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 142/417 (34%), Positives = 211/417 (50%), Gaps = 62/417 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF +LGL + A+++ G QKPT IQ +IP+IL G+D++A A+TG+GKT +++LP+L
Sbjct: 2 SFSKLGLSQPITDAISQLGYQKPTNIQIKAIPVILRGEDLIAAAQTGTGKTASFVLPILE 61
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQV------YSEVMALIELCKGQVQLKVVQLTSS 140
+L ++ + K AL+L PTREL QV YS+ + L L +
Sbjct: 62 KL-SQGETQRKKRIRALILTPTRELAVQVEQKIQDYSQHLPLTSLA----------MYGG 110
Query: 141 MPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYED 200
+ + AL DI++ATPG + + + +++LVLDEAD +L G+ D
Sbjct: 111 VDEQAQKQALIEGVDILVATPGRLIDMYGKRAVH----FEEVEVLVLDEADRMLDMGFID 166
Query: 201 DLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF 260
D+ + +P Q LL SAT S+ V L K +H+PY E+ ++ KN++Q
Sbjct: 167 DINKILDRLPTDIQNLLFSATLSNKVRDLAKTAVHDPY-----EISIAANQASKKNIEQ- 220
Query: 261 WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 320
W+ ++DK +L+ L E +ALIF T A +L LEK GI + ++ Q
Sbjct: 221 WLITVDKDKKSALLSHLINENDWDQALIFIETKHGAAKLASQLEKRGITAEPFHSGRSQA 280
Query: 321 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGV-VRG 379
R +LE+F AG Y+IAT GV RG
Sbjct: 281 VRSQLLEDFKAGKIKYMIAT----------------------------------GVGARG 306
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
ID + + VIN+++P A YVHRIGRTGRA G ++S VS D K I+S +G
Sbjct: 307 IDIEGLTRVINYDLPFPADEYVHRIGRTGRADAQGEAISFVSKDNFKNLCMIESRLG 363
>gi|301119991|ref|XP_002907723.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262106235|gb|EEY64287.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 479
Score = 192 bits (487), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 135/436 (30%), Positives = 216/436 (49%), Gaps = 64/436 (14%)
Query: 8 PSKEVKQAEEEEAEA-EEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDV 66
PS+ A E AE SF ELG+D + A+ G P+ IQQ +IP L GKD+
Sbjct: 9 PSQAPADANNETAEGFSGSASFAELGVDSAICEAIEAVGWSAPSKIQQQAIPHGLAGKDI 68
Query: 67 VARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELC 126
+ A+TGSGKT A+++P+L L + +P+ ALVL PTREL Q+ + AL
Sbjct: 69 IGLAETGSGKTGAFVIPILQSLLH--NPQRLY---ALVLAPTRELAYQIGEQFEAL---- 119
Query: 127 KGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKIL 185
+ LK + + + ALA P +VIATPG + L +K FS ++K L
Sbjct: 120 GASIGLKCACVVGGIDMMQQQVALARKPHVVIATPGRLVDHLEN----TKGFSLRTMKFL 175
Query: 186 VLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEV 245
VLDEAD +LS +E+++ + ++P L SAT +S V KL++ L +P
Sbjct: 176 VLDEADRMLSMDFEEEINQIVQLMPADRNTYLFSATMTSKVRKLQRASLKDP-------- 227
Query: 246 GDVKDEV-----IPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLK 300
VK E+ P+ ++Q ++ + K Y+ +L E+ + LIF +T + ++
Sbjct: 228 --VKVEITHKFATPETLKQHYLFIPAKFKDCYLAYVLN-EVAGQSVLIFASTCNGTQKVT 284
Query: 301 LFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSR 360
L L G ++ L+ ++PQ SRL L +F A + L+ TD
Sbjct: 285 LMLRNLGFQAICLHGQMPQPSRLGALNKFKAKARNVLVCTDVAS---------------- 328
Query: 361 KSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLV 420
RG+D +V VIN+++P + Y+HR+GRT RA G ++S V
Sbjct: 329 -----------------RGLDIPSVDVVINYDIPTHGKDYIHRVGRTARAGRAGVAISFV 371
Query: 421 SPDEMKIFEEIKSFVG 436
+ ++++++ I+ +G
Sbjct: 372 TQYDVELYQRIEHLLG 387
>gi|88797925|ref|ZP_01113512.1| probable ATP-dependent RNA helicase [Reinekea blandensis MED297]
gi|88779122|gb|EAR10310.1| probable ATP-dependent RNA helicase [Reinekea sp. MED297]
Length = 448
Score = 192 bits (487), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 141/413 (34%), Positives = 208/413 (50%), Gaps = 56/413 (13%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F L +L A+ + G +PT +Q ASIP L+GKD++ A+TGSGKT AYLLP LHR
Sbjct: 2 FASFDLHPKLTAAIEQHGWTEPTDVQTASIPQALDGKDLLISAETGSGKTAAYLLPALHR 61
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+ +E PK+ + LV+VPTREL QQV + AL + Q LK V +
Sbjct: 62 VLSERKPKAGI--RVLVMVPTRELAQQVMKDCEALTQ----QTGLKTVIIRGGQEFQYQA 115
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKI--LVLDEADLLLSYGYEDDLKAL 205
+ L P+IVIATPG M + L +K+ +D L + LVLDE D +L G+ D++ A+
Sbjct: 116 SLLRRNPEIVIATPGRMTEHL------NKNSTDLLDVECLVLDECDRMLDMGFRDEVLAI 169
Query: 206 SAVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNV-QQFWIS 263
+ I Q LL+SAT V + K IL++ + +K E++ +N+ QQ S
Sbjct: 170 AGQIRNDHQTLLLSATLKHRGVSSVAKDILNDAEFI------QIKPEMLQENIRQQRIFS 223
Query: 264 CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
K + LL E Q KA++FT T A L L + A L+ E+ Q+ R
Sbjct: 224 DGPAHKTKLVDWLLSHETFQ-KAIVFTKTRVQAEELANNLRLHQKRVATLHGEIEQDERN 282
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
I+ F G+ D ++ATD RG+D +
Sbjct: 283 RIMTRFRDGVVDVIVATD---------------------------------LAARGLDVE 309
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
V V+NF++ Q+ +VHR+GRTGRA +G +VSLV+ + + I+ ++G
Sbjct: 310 GVDLVVNFDIAQSGDEHVHRVGRTGRAGQSGLAVSLVAAHDYNLMSSIERYLG 362
>gi|85816749|gb|EAQ37935.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134]
Length = 425
Score = 192 bits (487), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 144/417 (34%), Positives = 207/417 (49%), Gaps = 60/417 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF+ LGL L+ A+++KG P+ IQQ +IP +LEGKDV+A A+TG+GKT + LP+LH
Sbjct: 2 SFKSLGLSDALLKAVSEKGYTTPSPIQQKAIPKVLEGKDVLASAQTGTGKTAGFTLPMLH 61
Query: 87 RLF-NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASD 145
L N + K+ ALVL PTREL Q+Y V E K V +K + + +
Sbjct: 62 NLIANPRQGRRKV--RALVLTPTRELAAQIYDNVR---EYSK-YVDIKSTVIFGGVNQNP 115
Query: 146 LRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL 205
+ DI++ATPG + + G+L S SD ++ LVLDEAD +L G+ D+K +
Sbjct: 116 QVRTIRQGVDILVATPGRLLDLENQGLL---SLSD-IEFLVLDEADRMLDMGFIHDIKKV 171
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQF 260
++P Q LL SAT + D+ KL IL NP ++ E P+N V Q
Sbjct: 172 LRLVPAKRQNLLFSATFNKDIKKLASSILTNPVLV----------EATPENTTAEKVDQK 221
Query: 261 WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 320
+ K ++ + E + L+FT T A RL L+K GI SA ++ QN
Sbjct: 222 TYRVDKSRKTEMLIKFIN-EGNWDQVLVFTRTKHGANRLSQKLDKAGITSAAIHGNKTQN 280
Query: 321 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 380
+R+ L F +G L+ATD RG+
Sbjct: 281 ARVKALAGFKSGKIRVLVATDI---------------------------------AARGL 307
Query: 381 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
D + VIN+E+P YVHRIGRTGRA +G ++SLV DE+ I+ +G+
Sbjct: 308 DIPLLPYVINYELPNVPEDYVHRIGRTGRAGASGQAISLVGVDEVAYVRGIEKLLGE 364
>gi|78067127|ref|YP_369896.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
gi|77967872|gb|ABB09252.1| DEAD/DEAH box helicase-like protein [Burkholderia sp. 383]
Length = 527
Score = 192 bits (487), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 132/416 (31%), Positives = 212/416 (50%), Gaps = 54/416 (12%)
Query: 25 EKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPL 84
+ +F++ GL ++ A+ ++G PT IQ +IP++L G+DV+ A+TG+GKT ++ LP+
Sbjct: 32 DATFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPI 91
Query: 85 LHRLF---NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELC--KGQVQLKVVQLTS 139
+ RL N S+ ++ AL+L PTREL QV + V A + + V V +
Sbjct: 92 IQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNP 151
Query: 140 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE 199
M ++LR + +++IATPG L V Q + ++ILVLDEAD +L G+
Sbjct: 152 QM--AELRRGV----EVLIATPG----RLLDHVQQKTANLGQVQILVLDEADRMLDMGFL 201
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
DL+ + ++P+ Q LL SAT S ++ KL L NP + + + NV Q
Sbjct: 202 PDLQRILNLLPKERQTLLFSATFSGEIKKLASTYLRNPQTIEV-----ARSNSTNANVTQ 256
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+E DK ++ LL+ + K+ ++F N+ A RL LE+ G+ ++ ++ + Q
Sbjct: 257 IVYDVAEGDKQAAVVQLLR-DRGLKQVIVFCNSKIGASRLARNLERDGVVASAIHGDKTQ 315
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
R+ L+ F G + L+ATD RG
Sbjct: 316 IERMQALDAFKRGEIEALVATDV---------------------------------AARG 342
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+D + VINF++P +A YVHRIGRTGRA TG ++SL SP+E K +I+ +
Sbjct: 343 LDIAELPAVINFDLPFSAEDYVHRIGRTGRAGATGDALSLCSPNERKQLADIEKLI 398
>gi|254473978|ref|ZP_05087371.1| dead/deah box helicase domain protein [Pseudovibrio sp. JE062]
gi|211956867|gb|EEA92074.1| dead/deah box helicase domain protein [Pseudovibrio sp. JE062]
Length = 483
Score = 192 bits (487), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 138/411 (33%), Positives = 204/411 (49%), Gaps = 47/411 (11%)
Query: 26 KSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLL 85
K+F+E GL ++ A+ ++G + PT IQ+ IPL+ EG+D++ A+TG+GKT A++LPLL
Sbjct: 2 KNFDEAGLAEPILRAVKEEGYEAPTPIQREVIPLMKEGEDILGIAQTGTGKTAAFVLPLL 61
Query: 86 HRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASD 145
RL + + AL+L PTREL Q+ V + V V P
Sbjct: 62 TRLAEDRKKPAPHTCRALILAPTRELASQIAESVRTYGQFIGPSV---AVIFGGVKPGPQ 118
Query: 146 LRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL 205
LRA G DIVIATPG + +STG ++ D+ +VLDEAD +L G+ ++ +
Sbjct: 119 LRALSKG-LDIVIATPGRLEDHMSTGGIK----LDATTTVVLDEADQMLDLGFAPAIRRI 173
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
+P+ Q +L+SAT + L K L NP+ +++ V E I ++V +F S S
Sbjct: 174 LGKLPKVRQTVLLSATMPIQIRNLAKEFLSNPHEISVAPV-SRPIEKIDQSV-RFLNSSS 231
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
+R LL IL+ +E +A++FT T A R+ LEK G+ SA ++ Q +R
Sbjct: 232 KRAALLDILSEDDIE----RAIVFTRTKRGADRVSGHLEKAGLSSAAIHGNKSQRNREKS 287
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
L+ F G L+ATD RGID V
Sbjct: 288 LDGFKNGRIKILVATDI---------------------------------AARGIDIDGV 314
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
V+N+E+P YVHRIGRT RA +G +VSL E +I+ +G
Sbjct: 315 SHVVNYELPNVPEAYVHRIGRTARAGKSGVAVSLCDATEQPYLRDIERLIG 365
>gi|350544972|ref|ZP_08914491.1| ATP-dependent RNA helicase Bcep18194_A5658 [Candidatus Burkholderia
kirkii UZHbot1]
gi|350527233|emb|CCD38619.1| ATP-dependent RNA helicase Bcep18194_A5658 [Candidatus Burkholderia
kirkii UZHbot1]
Length = 493
Score = 192 bits (487), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 134/414 (32%), Positives = 207/414 (50%), Gaps = 54/414 (13%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
+F++ GL ++ A+ + G PT IQ +IP++L G+DV+ A+TG+GKT ++ LP++
Sbjct: 18 TFDQFGLSSDILKAVRESGYTTPTPIQAQAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 77
Query: 87 RLF---NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELC--KGQVQLKVVQLTSSM 141
RL N S+ ++ AL+L PTREL QV + V + + V V +
Sbjct: 78 RLLPTANTSASPARHPVRALMLTPTRELADQVAANVQTYSKHTPLRSTVVFGGVDMN--- 134
Query: 142 PASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDD 201
P SD AL +I+IATPG L V Q +++LVLDEAD +L G+ D
Sbjct: 135 PQSD---ALRRGVEILIATPG----RLLDHVQQKTVNLGQVQMLVLDEADRMLDMGFLPD 187
Query: 202 LKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW 261
L+ + ++P+ CQ LL SAT S+++ KL L NP + + + NV+Q
Sbjct: 188 LQRILNLLPKECQTLLFSATFSAEIKKLASTYLRNPQTIEV-----ARSNSTNANVRQIV 242
Query: 262 ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 321
E DK + L++ E K+ ++F N+ A RL LE+ GI + ++ + Q+
Sbjct: 243 YEVHESDKSGAVAQLIR-ERKLKQVIVFCNSKIGASRLARVLERDGIVATAIHGDRTQSE 301
Query: 322 RLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGID 381
R+ L+ F G + L+ATD RG+D
Sbjct: 302 RMQALDAFKRGEIEALVATDV---------------------------------AARGLD 328
Query: 382 FKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ VINF++P NA YVHRIGRTGRA +G ++SL S +E K +I+ +
Sbjct: 329 IAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSANERKQLADIEKLI 382
>gi|261251316|ref|ZP_05943890.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|417956550|ref|ZP_12599514.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|260938189|gb|EEX94177.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|342809390|gb|EGU44509.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891 = ATCC
33934]
Length = 396
Score = 192 bits (487), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 140/410 (34%), Positives = 213/410 (51%), Gaps = 50/410 (12%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F +LGL + A+++ G KPT IQ +IP+IL+G+D++A A+TG+GKT +++LP+L +
Sbjct: 3 FSKLGLSQPITTAISELGYDKPTNIQNKAIPVILDGEDLIAAAQTGTGKTASFVLPILEK 62
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
L ++ + K AL+L PTREL QV +V E K + L + + + +
Sbjct: 63 L-SQGETQRKKRIRALILAPTRELAIQVEQKVQ---EYGK-HLNLTSLAMYGGVDEQPQK 117
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
AL DI++ATPG + + + + + ++ILVLDEAD +L G+ +D+ +
Sbjct: 118 QALIEGVDILVATPGRLLDMYA----KRAVYFEEVEILVLDEADRMLDMGFIEDINKILD 173
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 267
+P Q LL SAT S+ V L K +HNPY E+ ++ KN++Q W+ ++
Sbjct: 174 RLPTDIQNLLFSATLSNKVRDLAKTAVHNPY-----EISIAANQASKKNIEQ-WLITVDK 227
Query: 268 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 327
D +L+ L E +ALIF T A +L LEK GI++ ++ Q R +LE
Sbjct: 228 DMKSALLSHLIKENEWDQALIFIETKHGAAKLASQLEKRGIEAEAFHSGRSQAIRSKLLE 287
Query: 328 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGV-VRGIDFKNVH 386
+F AG Y+IAT GV RGID + +
Sbjct: 288 DFKAGKIKYMIAT----------------------------------GVGARGIDIEGLS 313
Query: 387 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
VIN+++P A YVHRIGRTGRA G ++S VS D K I+S +G
Sbjct: 314 RVINYDLPFPADEYVHRIGRTGRADAQGEAISFVSKDNFKNLCMIESRLG 363
>gi|18424420|ref|NP_568931.1| DEAD-box ATP-dependent RNA helicase 10 [Arabidopsis thaliana]
gi|108861883|sp|Q8GY84.2|RH10_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 10
gi|10177322|dbj|BAB10648.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
gi|332010025|gb|AED97408.1| DEAD-box ATP-dependent RNA helicase 10 [Arabidopsis thaliana]
Length = 456
Score = 192 bits (487), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 139/427 (32%), Positives = 208/427 (48%), Gaps = 57/427 (13%)
Query: 19 EAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTF 78
E E E K+F ELG+ LV A + G + P+ IQ ++P LEGKDV+ A+TGSGKT
Sbjct: 2 EEENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTG 61
Query: 79 AYLLPLLHRLFN---ESSPKSKLAP----AALVLVPTRELCQQVYSEVMALIELCKGQVQ 131
A+ +P+L L +S PK P A VL PTREL Q+ + AL +
Sbjct: 62 AFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEAL----GADIS 117
Query: 132 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEA 190
L+ L + AL P +++ATPG + +S +K FS SLK LVLDEA
Sbjct: 118 LRCAVLVGGIDRMQQTIALGKRPHVIVATPGRLWDHMS----DTKGFSLKSLKYLVLDEA 173
Query: 191 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD 250
D LL+ +E L + IP + L SAT + V KL++ L NP + E
Sbjct: 174 DRLLNEDFEKSLNQILEEIPLERKTFLFSATMTKKVRKLQRACLRNPVKI---EAASKYS 230
Query: 251 EVIPKNVQQFWISCSERD-KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIK 309
V Q +++ +D L+YIL+ E+ + ++IFT T D L L L G +
Sbjct: 231 TVDTLKQQYRFVAAKYKDCYLVYILS----EMPESTSMIFTRTCDGTRFLALVLRSLGFR 286
Query: 310 SAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAK 369
+ ++ ++ Q+ RL L +F AG + L+ TD
Sbjct: 287 AIPISGQMTQSKRLGALNKFKAGECNILVCTDVAS------------------------- 321
Query: 370 LDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFE 429
RG+D +V VIN+++P N+ Y+HR+GRT RA +G +SLV+ E++ +
Sbjct: 322 --------RGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQYELEWYI 373
Query: 430 EIKSFVG 436
+I+ +G
Sbjct: 374 QIEKLIG 380
>gi|309781736|ref|ZP_07676469.1| ATP-dependent RNA helicase [Ralstonia sp. 5_7_47FAA]
gi|308919377|gb|EFP65041.1| ATP-dependent RNA helicase [Ralstonia sp. 5_7_47FAA]
Length = 498
Score = 192 bits (487), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 130/428 (30%), Positives = 212/428 (49%), Gaps = 54/428 (12%)
Query: 15 AEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGS 74
+E EA A E +F+ GL ++ AL + G KPT IQ A+IP++ G DV+ A+TG+
Sbjct: 7 SEASEAPANESVTFDSFGLHPDVLRALTESGYTKPTPIQAAAIPVVTAGHDVMGAAQTGT 66
Query: 75 GKTFAYLLPLLHRLF---NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQ 131
GKT + LP++H L N S+ ++ AL+L PTREL QVY V + +
Sbjct: 67 GKTAGFSLPIIHNLLPDANTSASPARHPVRALILTPTRELADQVYDNVAKYAKYTALRSA 126
Query: 132 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS-LKILVLDEA 190
+ + + LR + +I++ATPG + +Q +S + S +++LVLDEA
Sbjct: 127 VVFGGVDMNPQTEQLRRGV----EILVATPGRL-----LDHVQQRSVNLSQVRMLVLDEA 177
Query: 191 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD 250
D +L G+ DL+ + ++P Q LL SAT S ++ +L L +P + + +
Sbjct: 178 DRMLDMGFLPDLQRIINLLPAHRQTLLFSATFSPEIKRLAASYLRHPQTIEV-----ARS 232
Query: 251 EVIPKNVQQFWISCSERDKLLYILTLLKLELVQ---KKALIFTNTIDMAFRLKLFLEKFG 307
+NV+Q + + K ++ LL+ Q ++ ++F+N+ RL LE+ G
Sbjct: 233 NATAENVRQVIYTVPDNHKQAALVHLLRQRAEQGLPRQCIVFSNSKIGCSRLARALEREG 292
Query: 308 IKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPK 367
I + ++ + Q R+ LE F G D L+ATD
Sbjct: 293 INANAIHGDKTQTERMQTLEAFKQGTVDVLVATDV------------------------- 327
Query: 368 AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 427
RG+D + VINF++P NA YVHRIGRTGRA +G ++SL +P + ++
Sbjct: 328 --------AARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFAPGDERL 379
Query: 428 FEEIKSFV 435
+I+ +
Sbjct: 380 LADIEKLI 387
>gi|449486366|ref|XP_002191498.2| PREDICTED: probable ATP-dependent RNA helicase DDX27-like
[Taeniopygia guttata]
Length = 757
Score = 191 bits (486), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 150/490 (30%), Positives = 224/490 (45%), Gaps = 57/490 (11%)
Query: 17 EEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGK 76
E+ ++ ++ SF+++ L L+ A+ G ++PT IQ+A IP+ L GKD+ A A TG+GK
Sbjct: 170 EDASQYDDNLSFQDMNLSRPLLKAITALGFKQPTPIQKACIPVGLLGKDICACAATGTGK 229
Query: 77 TFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQ 136
T A++LP+L RL + P+ LVLVPTREL QV+S L + L V
Sbjct: 230 TAAFILPVLERLIYK--PRQAPITRVLVLVPTRELGIQVHSVTKQLAQFSNVTTCLAV-- 285
Query: 137 LTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLS 195
+ AAL PDI+IATPG + L SF S+++L+LDEAD +L
Sbjct: 286 --GGLDVKTQEAALRSGPDILIATPGRLIDHLHN----CPSFHLSSVEVLILDEADRMLD 339
Query: 196 YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK 255
+E+ +K + + Q +L SAT + +V L + L NP + + D V P
Sbjct: 340 EYFEEQMKEIIRLCSHHRQTMLFSATMTEEVKDLASVSLKNPVRIFVNSNTD----VAPF 395
Query: 256 NVQQFW-ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILN 314
Q+F I + I+T L Q ++FT T A R+ + L G++ L+
Sbjct: 396 LRQEFIRIRPNREGDREAIVTALLTRTFQDHVMLFTQTKKQAHRMHILLGLMGLRVGELH 455
Query: 315 AELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEF 374
L Q RL L F D L+ATD
Sbjct: 456 GNLSQTQRLESLRRFKDEQIDILVATD--------------------------------- 482
Query: 375 GVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 434
RG+D + V TVINF MP YVHR+GRT RA G SVSLV +E K+ +EI
Sbjct: 483 VAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGKAGRSVSLVGEEERKMLKEI--- 539
Query: 435 VGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKL 494
+ + +L Q+ + R + E++ K + + E ++++ K
Sbjct: 540 -----VKTAKTPVKARILPQDVILKFREKIENLEKDIYAVLCLEREEREMQQSEAQINKA 594
Query: 495 KAHFEVNPKD 504
K E K+
Sbjct: 595 KKQLETGKKE 604
>gi|402077170|gb|EJT72519.1| ATP-dependent RNA helicase DRS1 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 827
Score = 191 bits (486), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 137/417 (32%), Positives = 211/417 (50%), Gaps = 55/417 (13%)
Query: 18 EEAEAEEEK----SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTG 73
EE +AE+ K SF+ + L ++ L G KPT IQ +IP+ L GKDVV A+TG
Sbjct: 271 EEPKAEKGKGGAASFQGMSLSRPILRGLASVGFGKPTPIQAKAIPMALMGKDVVGGAQTG 330
Query: 74 SGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLK 133
SGKT A+++P+L RL PK +VL PTREL Q ++ + L + L
Sbjct: 331 SGKTGAFMVPILERLLYR--PKKVPTSRVVVLTPTRELAIQCHAVAIKLASHTDIKFCLA 388
Query: 134 VVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADL 192
V L+ + ++LR PD++IATPG + S SF+ D+++ILVLDEAD
Sbjct: 389 VGGLSLKVQEAELRLR----PDVIIATPGRFIDHMRN----SASFAVDTVEILVLDEADR 440
Query: 193 LLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEV 252
+L G+ D+L + +P+ Q +L SAT +S VD L + L+ P + + D + +
Sbjct: 441 MLEDGFADELNEILTTLPKSRQTMLFSATMTSSVDTLIRAGLNKPVRIMV----DSQKKT 496
Query: 253 IPKNVQQF--WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 310
+ VQ+F E ++ Y++ L K +L ++ +IF +A ++ G+
Sbjct: 497 VGTLVQEFVRLRPGREEKRMGYLVHLCK-KLYTERVIIFFRQKKIAHHARIIFGLLGLSC 555
Query: 311 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL 370
A L+ + Q R+ +E+F G +L+ATD L
Sbjct: 556 AELHGSMNQTQRIQSVEDFRDGKVSFLLATD----------------------------L 587
Query: 371 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 427
S RG+D K V TVIN+E PQ+ YVHR+GRT RA +G +V+L + + K+
Sbjct: 588 AS-----RGLDIKGVDTVINYEAPQSLEIYVHRVGRTARAGRSGVAVTLAAEPDRKV 639
>gi|294670965|ref|ZP_06735821.1| hypothetical protein NEIELOOT_02671 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291307452|gb|EFE48695.1| hypothetical protein NEIELOOT_02671 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 453
Score = 191 bits (486), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 132/418 (31%), Positives = 203/418 (48%), Gaps = 55/418 (13%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F +L LD ++ A++ +G + PT IQ +IP LEG+D++A A+TGSGKT A+LLP L R
Sbjct: 5 FADLNLDKNILSAVSSEGYENPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
L S K P ALVL PTREL QV +A K + V +
Sbjct: 65 LTKRSEKPGK-GPRALVLTPTRELAAQVEKNALA---YAKNMRWFRTVSIVGGASFGYQT 120
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
AL+ P D+++ATPG + + +G K D L++L+LDEAD +L G+ DD++ +
Sbjct: 121 RALSKPVDLIVATPGRLMDLMQSG----KVDFDRLEVLILDEADRMLDMGFIDDIETIVE 176
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE- 266
P Q LL SAT V KL + + NP ++ + V D +++ + C +
Sbjct: 177 ATPTDRQTLLFSATWDGAVGKLARKLTKNPEVVEVERVDD------QGKIEEQLLYCDDM 230
Query: 267 --RDKLL-YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+++LL +IL ++ + +IFT+T M + L + G + L+ ++PQ R
Sbjct: 231 RHKNRLLDHILRDANID----QCVIFTSTKAMTEVIADDLYEKGFAANCLHGDMPQGWRN 286
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
L + G L+ATD RGID
Sbjct: 287 RTLMDLRKGRCKILVATDV---------------------------------AARGIDVP 313
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENE 441
+ VIN+++P+ A YVHRIGRTGRA TG +++ +E +I+ ++ NE
Sbjct: 314 TITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYIDRKLNE 371
>gi|407803800|ref|ZP_11150632.1| ATP-dependent RNA helicase [Alcanivorax sp. W11-5]
gi|407022210|gb|EKE33965.1| ATP-dependent RNA helicase [Alcanivorax sp. W11-5]
Length = 586
Score = 191 bits (486), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 136/441 (30%), Positives = 213/441 (48%), Gaps = 56/441 (12%)
Query: 25 EKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPL 84
+ F+ L L + A+ G Q P+ IQQA IP ILEG+DV+ +A+TG+GKT A+ LPL
Sbjct: 8 QPGFDALELSPTVKQAIRALGYQTPSAIQQAIIPHILEGRDVIGQAQTGTGKTAAFALPL 67
Query: 85 LHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
+ R + + ++ LVL PTREL QV + + + L+VV L M
Sbjct: 68 ISRFGDAPAGAVQV----LVLAPTRELALQVTE---SFEKYGQQTPSLRVVTLCGGMDYR 120
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
AL +VI TPG + L G L+ D+L+ LVLDEAD +L G+ DD++
Sbjct: 121 PQTRALREGVQVVIGTPGRVVDHLKRGTLK----LDALRCLVLDEADEMLRMGFIDDVEW 176
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264
+ P CQ L+SAT + KL + L +P +T+ K + ++Q ++
Sbjct: 177 VMEQTPAACQVALLSATMPPPIRKLAQRFLKSPQEITVA----TKTATV-AAIRQRYLFI 231
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
++RDKL ++ +L+ E ++F T + L FL++ G ++ LN ++ Q R
Sbjct: 232 NQRDKLDALVRVLETETF-DGVILFARTKESTVELADFLQRAGFRATALNGDMAQPHREQ 290
Query: 325 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 384
++E+ G D L+ATD V RG+D
Sbjct: 291 VVEQIKGGRIDILVATDV---------------------------------VARGLDVPR 317
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSN 444
+ V+N+++P + YVHRIGRTGRA G ++ V+P E ++ + I+ E +
Sbjct: 318 ISMVLNYDIPFDGETYVHRIGRTGRAGREGDAILFVTPREKRMLQNIERLTRQKVEEMA- 376
Query: 445 IIAPFPLLAQ-NAVESLRYRA 464
P AQ N V R++A
Sbjct: 377 ----LPTSAQINVVRKTRFKA 393
>gi|402565885|ref|YP_006615230.1| DEAD/DEAH box helicase [Burkholderia cepacia GG4]
gi|402247082|gb|AFQ47536.1| DEAD/DEAH box helicase domain protein [Burkholderia cepacia GG4]
Length = 574
Score = 191 bits (486), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 133/416 (31%), Positives = 212/416 (50%), Gaps = 54/416 (12%)
Query: 25 EKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPL 84
+ +F++ GL ++ A+ ++G PT IQ +IP++L G+DV+ A+TG+GKT ++ LP+
Sbjct: 84 DATFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPI 143
Query: 85 LHRLF---NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELC--KGQVQLKVVQLTS 139
+ RL N S+ ++ AL+L PTREL QV + V A + + V V +
Sbjct: 144 IQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNP 203
Query: 140 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE 199
M ++LR + +I+IATPG L V Q + ++ILVLDEAD +L G+
Sbjct: 204 QM--AELRRGV----EILIATPG----RLLDHVQQKTANLGQVQILVLDEADRMLDMGFL 253
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
DL+ + ++P+ Q LL SAT S ++ KL L NP + + + NV Q
Sbjct: 254 PDLQRILNLLPKERQTLLFSATFSGEIKKLASTYLRNPQTIEV-----ARSNSTNANVTQ 308
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+E DK ++ LL+ + K+ ++F N+ A RL LE+ G+ ++ ++ + Q
Sbjct: 309 IVYDVAEGDKQAAVVQLLR-DRGLKQVIVFCNSKIGASRLARNLERDGVVASAIHGDKTQ 367
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
R+ L+ F G + L+ATD RG
Sbjct: 368 IERMQALDAFKRGEIEALVATDV---------------------------------AARG 394
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+D + VINF++P +A YVHRIGRTGRA TG ++SL SP+E K +I+ +
Sbjct: 395 LDIAELPAVINFDLPFSAEDYVHRIGRTGRAGATGDALSLCSPNERKQLADIEKLI 450
>gi|66472376|ref|NP_001018522.1| probable ATP-dependent RNA helicase DDX47 [Danio rerio]
gi|63102032|gb|AAH95776.1| Zgc:112350 [Danio rerio]
Length = 512
Score = 191 bits (486), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 131/422 (31%), Positives = 212/422 (50%), Gaps = 53/422 (12%)
Query: 16 EEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSG 75
EE E SF+ELG+ L A ++ G +KPT IQ +IP+ L+G+DV+ A+TGSG
Sbjct: 69 EETVTTGEIHTSFKELGVTEVLCEACDQLGWKKPTKIQIEAIPVALQGRDVIGLAETGSG 128
Query: 76 KTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVV 135
KT A+ +P+L L + +L LVL PTREL Q+ + AL + +K
Sbjct: 129 KTGAFAVPVLQSLL---ACAQRL--HTLVLTPTRELAFQIAEQFDAL----GSSIGVKTA 179
Query: 136 QLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLL 194
+ + LA P +VIATPG + + +K F+ +LK LV+DEAD +L
Sbjct: 180 VIVGGIDMMSQALVLAKKPHVVIATPGRLIDHME----NTKGFNLRALKYLVMDEADRIL 235
Query: 195 SYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIP 254
+ +E ++ + VIPR + L SAT + V KL++ L +P ++ D+
Sbjct: 236 NMDFESEVDKILKVIPRDRRTFLFSATMTKKVQKLQRAALQDPVKCSVSSKYATVDK--- 292
Query: 255 KNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILN 314
+QQF+I + K Y++++L EL ++F T + R+ L L GI + L+
Sbjct: 293 --LQQFYIFIPSKYKDCYLVSILN-ELAGNSFMVFCGTCNNTQRVALLLRNLGITAIPLH 349
Query: 315 AELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEF 374
++ QN RL L +F + L+ATD
Sbjct: 350 GQMSQNKRLGALNKFKSKSRSVLLATDVAS------------------------------ 379
Query: 375 GVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 434
RG+D +V VINF++P ++ Y+HR+GRT RA +G S++ V+ ++++F+ I++
Sbjct: 380 ---RGLDIPHVDCVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRIEAL 436
Query: 435 VG 436
+G
Sbjct: 437 IG 438
>gi|396488909|ref|XP_003842973.1| similar to ATP-dependent RNA helicase DRS1 [Leptosphaeria maculans
JN3]
gi|312219551|emb|CBX99494.1| similar to ATP-dependent RNA helicase DRS1 [Leptosphaeria maculans
JN3]
Length = 811
Score = 191 bits (486), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 127/410 (30%), Positives = 195/410 (47%), Gaps = 50/410 (12%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF+ + L ++ L G +PT IQ +IP+ ++GKDVV A+TGSGKT A+L+P+L
Sbjct: 281 SFQAMSLSRPILRGLAAVGFSEPTPIQNKAIPIAMQGKDVVGGAETGSGKTAAFLIPILE 340
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
RL PK + +PTREL Q ++ L + + D
Sbjct: 341 RLL--YRPKKVPTTRVAIFMPTRELAVQCFNVATKLASFT----DITFALMAGGFSTKDQ 394
Query: 147 RAALAGPPDIVIATPG-CMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL 205
A L PD+VIATPG + +T Q + L+ILVLDEAD +L G+E L +
Sbjct: 395 EAVLKTRPDVVIATPGRFIDHMHNTAAFQ----VEHLEILVLDEADRMLEEGFESQLNEI 450
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW-ISC 264
IP+ Q +L SAT +S VD+L ++ + P L + D K + Q+F +
Sbjct: 451 LTTIPKSRQTMLFSATMTSTVDRLIRIGMDKPVRLMV----DAKKHTVKGLTQEFIRLRQ 506
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
+ D+ L L + + ++ +IF A R+++ G+K++ L+ + Q R+
Sbjct: 507 GKEDRRLAYLMYICEKFYNERVIIFFRQKKEAHRVRVVFALCGLKASELHGNMSQEQRIQ 566
Query: 325 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 384
+E F +G YL+ATD RG+D KN
Sbjct: 567 AVEAFRSGKSAYLLATDVAS---------------------------------RGLDIKN 593
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS-PDEMKIFEEIKS 433
V TVIN+E PQ Y+HR+GRT RA G + +L + PD + + +K+
Sbjct: 594 VSTVINYEAPQTHDIYMHRVGRTARAGREGRACTLAAEPDRKVVKQAVKA 643
>gi|258563228|ref|XP_002582359.1| hypothetical protein UREG_07132 [Uncinocarpus reesii 1704]
gi|237907866|gb|EEP82267.1| hypothetical protein UREG_07132 [Uncinocarpus reesii 1704]
Length = 836
Score = 191 bits (486), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 142/494 (28%), Positives = 232/494 (46%), Gaps = 64/494 (12%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
+F+ L ++ L G PT IQ+ +IP+ L GKD+V A TGSGKT A+++P+L
Sbjct: 313 TFQNFNLSRPILRGLAAVGFSAPTPIQRKAIPVGLLGKDLVGGAVTGSGKTAAFIIPILE 372
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
RL P+ ++L+PTREL Q Y+ L + QL +
Sbjct: 373 RLLYR--PRKVPTSRVVILMPTRELAVQCYNVATKLATYT----DITFCQLVGGFSLREQ 426
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKAL 205
L PD++IATPG + S SF+ D+L+ILVLDEAD +L G+ D+L +
Sbjct: 427 ENVLKQRPDVIIATPGRFIDHMRN----SASFTVDTLEILVLDEADRMLEDGFADELNEI 482
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-WISC 264
IP+ Q +L SAT + VDKL ++ L+ P L + D K + + VQ+F +
Sbjct: 483 LTTIPKSRQTMLFSATMTDSVDKLIRVGLNRPVRLMV----DAKKQTVGTLVQEFVRLRP 538
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
K + L LL + + ++F A R ++ G+K+A L+ + Q R+H
Sbjct: 539 GREGKRMGYLVLLCQTVYTNRVIVFFRQKKEAHRARIVFGLLGLKAAELHGSMSQEQRIH 598
Query: 325 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 384
+E F G +L+ATD L S RG+D K
Sbjct: 599 AVEAFRDGKVPFLLATD----------------------------LAS-----RGLDIKG 625
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSN 444
V +VIN+E PQ+ Y+HR+GRT RA +G + ++ + + KI +K+ V + +
Sbjct: 626 VESVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKI---VKAAVKAGRAQGAK 682
Query: 445 IIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKD 504
I++ ++ N + + E++ + I L+ E +A +V +
Sbjct: 683 IVS--RIVDPNVADEWAIKVEEMQSEIEDI---------LKEEKAEKHLAQAEMQVT-RG 730
Query: 505 LDLLKHDKDLSKKP 518
+L+KH+ ++ +P
Sbjct: 731 HNLIKHEDEIMSRP 744
>gi|46124501|ref|XP_386804.1| hypothetical protein FG06628.1 [Gibberella zeae PH-1]
gi|91206590|sp|Q4I830.1|DRS1_GIBZE RecName: Full=ATP-dependent RNA helicase DRS1
Length = 796
Score = 191 bits (486), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 135/403 (33%), Positives = 203/403 (50%), Gaps = 49/403 (12%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF+ + L ++ L G KPT IQ SIP+ L GKDVV A+TGSGKT A++LP+L
Sbjct: 257 SFQTMSLSRPIMRGLASVGFTKPTPIQAKSIPIALMGKDVVGGAETGSGKTGAFILPILE 316
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
RL PK +VL+PTREL Q ++ L + L V L S+ A +L
Sbjct: 317 RLLYR--PKKIPTTRVVVLLPTRELAIQCHAVATKLAAFTDIKFTLAVGGL--SLKAQEL 372
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKAL 205
L PD++IATPG + S SFS D+++ILVLDEAD +L G+ D+L +
Sbjct: 373 ELKLR--PDVIIATPGRFIDHMRN----SASFSVDTVEILVLDEADRMLEDGFADELNEI 426
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-WISC 264
+P+ Q +L SAT +S VD+L ++ L+ P + + + + + + VQ+F +
Sbjct: 427 LTTLPKSRQTMLFSATMTSSVDRLIQIGLNRPARVMV----NSQKKTVTTLVQEFVRLRP 482
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
DK + L + L +++ +IF A R ++ G+ A L+ + Q R+
Sbjct: 483 GREDKRMGYLAHVCKNLYKERVIIFFRQKKDAHRARIIFGLLGLSCAELHGSMNQTQRIS 542
Query: 325 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 384
+E+F G YL+ATD L S RG+D K
Sbjct: 543 SVEDFRDGKVAYLLATD----------------------------LAS-----RGLDIKG 569
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 427
V TVIN+E PQ+ YVHR+GRT RA G ++++ + + K+
Sbjct: 570 VDTVINYEAPQSLDIYVHRVGRTARAGRKGVALTIAAESDRKV 612
>gi|407715860|ref|YP_006837140.1| ATP-dependent RNA helicase RhlE [Cycloclasticus sp. P1]
gi|407256196|gb|AFT66637.1| ATP-dependent RNA helicase RhlE [Cycloclasticus sp. P1]
Length = 442
Score = 191 bits (486), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 138/413 (33%), Positives = 208/413 (50%), Gaps = 48/413 (11%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF+ LGL L+ A++KKG +PT IQ SIPLILEG+D++ A+TG+GKT ++ LP+L
Sbjct: 2 SFDSLGLRAELITAVSKKGYTEPTSIQAQSIPLILEGRDLMGGAQTGTGKTASFTLPVLQ 61
Query: 87 RLFNESSPKSKLAPA-ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASD 145
RL K K ALVL PTREL QV V + + L + + +
Sbjct: 62 RLMESGDAKPKAGKVRALVLTPTRELAAQVAESVRDYGQ----HLPLSSFVIFGGVNINP 117
Query: 146 LRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL 205
+ L DI++ATPG + +S Q+ S++ILVLDEAD +L G+ D++ +
Sbjct: 118 QKQKLRKGVDILVATPGRLLDHVS----QNTVDLSSVEILVLDEADRMLDMGFIRDIRKV 173
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
A++P+ Q LL SAT S+++ KL +LHNP ++ + + E+I + V
Sbjct: 174 LALLPQQKQTLLFSATFSNEIKKLTSSLLHNPALVEVAKENSA-SELISQVVHPV----- 227
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
++ + +L+ L K+ L+FT T A +L L K GI +A ++ Q +R
Sbjct: 228 DKKRKRELLSFLIGSNDWKQVLVFTRTKHGANKLSEQLNKDGITAAAIHGNKSQGARTKA 287
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
L F + L+ATD RG+D +
Sbjct: 288 LANFKSNDIRVLVATDI---------------------------------AARGLDIDQL 314
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD 438
V+NFE+P YVHRIGRTGRA + G ++SLV DE+K+ + I+ + D
Sbjct: 315 PHVVNFELPNVPEDYVHRIGRTGRAGSEGEAMSLVCVDELKLLKGIERLIKTD 367
>gi|348544540|ref|XP_003459739.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Oreochromis
niloticus]
Length = 736
Score = 191 bits (486), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 148/438 (33%), Positives = 212/438 (48%), Gaps = 60/438 (13%)
Query: 3 KSKEIPSKEVKQAE---EEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPL 59
+ KE K+ K AE E+ ++ +++ +F+++ L ++ A+ G ++PT IQ+A +P+
Sbjct: 140 RDKERRGKKRKAAESFYEDASQYDDQLTFDDMNLSRPILKAITALGFKQPTPIQKACVPV 199
Query: 60 ILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEV 119
L GKD+ A A TG+GKT A++LP+L RL + P++ LVLVPTREL QV+S
Sbjct: 200 GLLGKDLCACAATGTGKTAAFMLPVLERLVYK--PRTSQVTRVLVLVPTRELGIQVHSVA 257
Query: 120 MALIELCKGQVQLKVVQLTSSMPASDLR---AALAGPPDIVIATPGCMPKCLSTGVLQSK 176
L + L V L DL+ AAL PDI+IATPG + L +
Sbjct: 258 RQLAQFTSITTCLAVGGL-------DLKSQEAALRAGPDILIATPGRLIDHLHN----TP 306
Query: 177 SFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILH 235
SF ++IL+LDEAD +L +E+ +K + + Q +L SAT + +V L + L
Sbjct: 307 SFELTHIEILILDEADRMLDEYFEEQMKEIIRLCSYNRQTMLFSATMTEEVKDLAAVSLK 366
Query: 236 NPYILTLPEVGDVKDEVIPKNVQQFWISCSER--DKLLYILTLLKLELVQKKALIFTNTI 293
P + + D V P Q+F R D+ + LL Q ++FT T
Sbjct: 367 QPVRIFVNSNTD----VAPFLRQEFVRIRPHREGDREAVVAALL-TRTFQDHVMLFTQTR 421
Query: 294 DMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDE 353
A RL + L G+K L+ EL QN RL L F D L+ATD
Sbjct: 422 KQAHRLHILLGLMGLKVGELHGELSQNQRLENLRRFKDEQIDILVATD------------ 469
Query: 354 GGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNT 413
RG+D V TVINF MP YVHR+GRT RA +
Sbjct: 470 ---------------------VAARGLDIDGVKTVINFTMPGTVKHYVHRVGRTARAGRS 508
Query: 414 GASVSLVSPDEMKIFEEI 431
G SVSLV E K+ +E+
Sbjct: 509 GRSVSLVGESERKMLKEV 526
>gi|19114747|ref|NP_593835.1| ATP-dependent RNA helicase Rrp3 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|74654514|sp|Q9P6N8.1|RRP3_SCHPO RecName: Full=ATP-dependent rRNA helicase rrp3
gi|7708606|emb|CAB90153.1| ATP-dependent RNA helicase Rrp3 (predicted) [Schizosaccharomyces
pombe]
Length = 465
Score = 191 bits (486), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 131/420 (31%), Positives = 208/420 (49%), Gaps = 53/420 (12%)
Query: 23 EEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLL 82
E K+F+ELG+ L A K G + PT IQQ +IP++L +DV+ A+TGSGKT A+ L
Sbjct: 43 EAPKTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFAL 102
Query: 83 PLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMP 142
P++ L+N SP A+VL PTREL Q+ + E G + ++ V + M
Sbjct: 103 PVIQELWNNPSPF-----FAVVLAPTRELAYQISEQ----FEAIGGSIGVRSVVIVGGMD 153
Query: 143 ASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDD 201
AL+ P +++ TPG + L +K FS +LK L++DEAD LL +
Sbjct: 154 MVTQAVALSKKPHVLVCTPGRLMDHLE----NTKGFSLKNLKYLIMDEADRLLDMDFGPI 209
Query: 202 LKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW 261
+ + +IP + LL SAT +S V+KL++ LH P + + D +I Q +
Sbjct: 210 IDKILKIIPHERRTLLFSATMTSKVEKLQRASLHQPVRVAVSSKFSTVDTLI-----QRY 264
Query: 262 ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 321
+ + K Y++ L+ EL +IF T++ RL + L G + L+ +L Q++
Sbjct: 265 LFFPFKHKDTYLVYLVN-ELAGNSIIIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSN 323
Query: 322 RLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGID 381
RL L +F +G L+ATD RG+D
Sbjct: 324 RLGALNKFKSGARSTLVATDVA---------------------------------ARGLD 350
Query: 382 FKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENE 441
V VIN+++P ++ Y+HR+GRT RA G S++LV+ +++ F I++ +G E
Sbjct: 351 IPLVDVVINYDIPTDSKAYIHRVGRTARAGRAGKSIALVTQYDLEPFLRIEATIGKKMQE 410
>gi|392544521|ref|ZP_10291658.1| DEAD/DEAH box helicase [Pseudoalteromonas piscicida JCM 20779]
Length = 443
Score = 191 bits (486), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 145/454 (31%), Positives = 218/454 (48%), Gaps = 61/454 (13%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F ELG+D RL L +GI +PT IQ +IP L G DV A++KTGSGKT A+LLP + R
Sbjct: 3 FTELGIDTRLEQQLAHQGITEPTEIQAHAIPTALAGHDVFAQSKTGSGKTLAFLLPAVQR 62
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+ + + SK P +++ PTREL QV+SE A LC G ++V ++ +D
Sbjct: 63 VMKQKA-LSKRDPRVVIVAPTRELATQVFSECRA---LCAG-TNIQVCKILGGENYNDQV 117
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS- 206
AL P V+ TPG + + L F L++L+ DEAD + G+E L ++
Sbjct: 118 KALRRDPHFVVGTPGRIADHVENRSL----FLGGLELLIFDEADRMFDLGFEKQLDVIND 173
Query: 207 AVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
+ R Q LL SAT + V+ + +L +P + L +++ Q + +
Sbjct: 174 SADHRQRQTLLFSATLDHTQVEASSRQLLKSPKRIMLSNAHQQHEDI----KQALYFA-- 227
Query: 266 ERDKLLYILTLLKLELVQK---KALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 322
D L + LLK + Q + +IFT T RL L + IK+ L+ ++PQN R
Sbjct: 228 --DHLDHKEALLKHFITQDDVGQCIIFTATRGDTDRLSKLLNEMSIKAVSLSGDMPQNKR 285
Query: 323 LHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDF 382
L I+E F+ G++ L+ TD RG+D
Sbjct: 286 LDIMESFSRGIYKVLVTTDVAS---------------------------------RGLDL 312
Query: 383 KNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDE--- 439
+V V+NF++P+ A YVHRIGRTGRA G ++S V P + + IK+++ DE
Sbjct: 313 LSVTHVMNFDLPKQAEEYVHRIGRTGRAGFKGTAISFVGPKDWDSYVAIKNYL--DEPLR 370
Query: 440 -NEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVT 472
E ++ F L Q +S AE K +
Sbjct: 371 FEEVPGLVGKFKGLKQKPQQSKNRPAESAPKQTS 404
>gi|225457931|ref|XP_002273443.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 28-like [Vitis
vinifera]
Length = 732
Score = 191 bits (486), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 143/414 (34%), Positives = 198/414 (47%), Gaps = 53/414 (12%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF EL L L+ A G KPT IQ A IP+ L G+D+ A TGSGKT A+ LP L
Sbjct: 126 SFLELNLSRPLLRACEALGYTKPTPIQAACIPIALTGRDICGSAITGSGKTAAFSLPTLE 185
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
RL PK A LVL PTREL QV+S + L + + L V L+S M + L
Sbjct: 186 RLLFR--PKRVQAIRVLVLTPTRELAVQVHSMMEKLAQFTDIRCCLIVGGLSSKMQETAL 243
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
R+ PD+V+ATPG M L + S D L +L+LDEAD LL G+ +++ L
Sbjct: 244 RSM----PDVVVATPGRMIDHLRNSM--SVDLED-LAVLILDEADRLLELGFNAEIRELV 296
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL----TLPEVGDVKDEVIPKNVQQFWI 262
+ P+ Q +L SAT + +VD+L KL + P L + + +EV+ +++
Sbjct: 297 RLCPKRRQTMLFSATMTEEVDELVKLSMTKPMRLAADPSTKRPATLTEEVV--RIRRMRE 354
Query: 263 SCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 322
E +L L + KA+IF+ T A RLK+ G K+A L+ L Q R
Sbjct: 355 VNQE-----AVLLALCSKTFTAKAIIFSGTKQAAHRLKILFGLAGFKAAELHGNLTQVQR 409
Query: 323 LHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDF 382
L LE F D+LIATD RG+D
Sbjct: 410 LDALELFRKQQVDFLIATD---------------------------------VAARGLDI 436
Query: 383 KNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
V TVIN+ P++ YVHR+GRT RA G +V+ V+ ++ + + I G
Sbjct: 437 IGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKSIVKRAG 490
>gi|134093720|ref|YP_001098795.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
gi|133737623|emb|CAL60666.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
Length = 502
Score = 191 bits (486), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 133/415 (32%), Positives = 210/415 (50%), Gaps = 58/415 (13%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F++ GL ++ ALN +G PT IQ +IP++L+G DV+ A+TG+GKT + LP++
Sbjct: 25 FQDFGLAPEILKALNDQGYVHPTPIQAEAIPVVLKGMDVMGAAQTGTGKTAGFSLPIIQL 84
Query: 88 LF---NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
L N S+ ++ AL+L PTREL QV + V A L+ + + M +
Sbjct: 85 LMAHANSSASPARHPVRALILTPTRELADQVAANVKAYSR----HTPLRSLVVFGGMDMT 140
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS-LKILVLDEADLLLSYGYEDDLK 203
AAL G +IVIATPG + +Q K+ + S +ILV+DEAD +L G+ DL+
Sbjct: 141 PQTAALRGGVEIVIATPGRL-----LDHVQQKTINLSQTQILVMDEADRMLDMGFLPDLQ 195
Query: 204 ALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWIS 263
+ ++P+ Q L+ SAT S ++ KL L +P + + + +NV Q
Sbjct: 196 RIINLLPKQRQNLMFSATFSPEIKKLAATFLKDPVTIEV-----ARSNATAENVTQIIYK 250
Query: 264 CSE---RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 320
E RD + +I+ L K+ ++F+NT A RL LE G+K++ ++ + Q+
Sbjct: 251 VEEEAKRDAVSFIIRERGL----KQVIVFSNTKIGASRLARQLESEGVKASAIHGDKSQS 306
Query: 321 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 380
R+ LE+F G + L+ATD RG+
Sbjct: 307 ERMQALEQFKNGTIEVLVATDV---------------------------------AARGL 333
Query: 381 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
D + VINF++P NA YVHRIGRTGRA +G ++SL S + ++ +I+ +
Sbjct: 334 DIAELPCVINFDLPYNAEDYVHRIGRTGRAGASGDAISLFSDKDARLLVDIEKMI 388
>gi|420249963|ref|ZP_14753195.1| DNA/RNA helicase, superfamily II [Burkholderia sp. BT03]
gi|398063077|gb|EJL54833.1| DNA/RNA helicase, superfamily II [Burkholderia sp. BT03]
Length = 513
Score = 191 bits (486), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 143/411 (34%), Positives = 204/411 (49%), Gaps = 50/411 (12%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF+ LGL +LV A+N+ G PT IQQ +IP +L+G D++A A+TG+GKT + LP+L
Sbjct: 2 SFDSLGLSEQLVRAVNELGYTSPTPIQQQAIPAVLKGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 87 RLFN-ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASD 145
RL +P K AL+L PTREL QV V A + K LK + + +
Sbjct: 62 RLLTMPPAPGGKRVVRALILTPTRELAAQVEESVRAYGKYLK----LKSTVMFGGVGINP 117
Query: 146 LRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS-LKILVLDEADLLLSYGYEDDLKA 204
AL DIV+ATPG + L +Q K+ S L+ILVLDEAD +L G+ D+K
Sbjct: 118 QIDALRRGVDIVVATPG---RLLDH--MQQKTIDLSHLEILVLDEADRMLDMGFIHDIKR 172
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264
+ A +P Q LL SAT S ++ L +L +P ++ + + V K I
Sbjct: 173 VLAKLPPKRQNLLFSATFSDEIKALADNLLDSPALIEVARRNTTAESVAQK------IHP 226
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
+RD+ +LT L + + L+FT T A RL L K GI + ++ Q++R
Sbjct: 227 VDRDRKREMLTHLIKQHNWFQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTR 286
Query: 325 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 384
L EF L+ATD RGID
Sbjct: 287 ALAEFKNNTLQVLVATDI---------------------------------AARGIDIDQ 313
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ V+NF++P YVHRIGRTGRA TG +VSLV DE+++ ++I+ +
Sbjct: 314 LPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLLKDIEKLI 364
>gi|423205411|ref|ZP_17191967.1| hypothetical protein HMPREF1168_01602 [Aeromonas veronii AMC34]
gi|404624206|gb|EKB21046.1| hypothetical protein HMPREF1168_01602 [Aeromonas veronii AMC34]
Length = 416
Score = 191 bits (486), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 145/416 (34%), Positives = 208/416 (50%), Gaps = 61/416 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF EL L RL L + G PT IQ +IP+IL G+D++A A+TG+GKT A++LPLL
Sbjct: 5 SFAELALSPRLQQTLTELGYAAPTPIQARAIPVILAGRDLMAGAQTGTGKTAAFVLPLLE 64
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQ-VQLKVVQLTSSMPASD 145
+L + +S ALVLVPTREL QV V GQ L + + +
Sbjct: 65 QLLAQPQMESPRPIRALVLVPTRELAVQVAESVARY-----GQGTGLTSTLVYGGVSIAA 119
Query: 146 LRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL 205
AAL D++IATPG + L G L + S LV DEAD +L G+ D++KAL
Sbjct: 120 QVAALQAGVDLLIATPGRLLDHLRQGALSLEHLSH----LVFDEADRMLDMGFMDEIKAL 175
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNV------QQ 259
IP Q LL SAT ++ L K++L +P ++ EV P+N Q+
Sbjct: 176 LKQIPADRQTLLFSATCDDNLFALSKVLLRDPELI----------EVAPRNTTAAEVEQR 225
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+ S+R KL + +LK++ ALIF+ T A +L L K I + + +L Q
Sbjct: 226 VYTVDSDR-KLALVEHMLKVK-GWAPALIFSRTRQGADKLAQQLGKADINALAFHGDLSQ 283
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
++R +L EF AG L+ATD RG
Sbjct: 284 SAREKVLLEFRAGTLQALVATDVA---------------------------------ARG 310
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+D +++ VIN E P A YVHRIGRTGRA N G +++L SP++ + E++++ +
Sbjct: 311 LDITDLNYVINLEFPFVAEDYVHRIGRTGRAGNKGLAITLFSPEDAPLLEKVEAVL 366
>gi|332534579|ref|ZP_08410414.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505]
gi|414070322|ref|ZP_11406308.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. Bsw20308]
gi|332035999|gb|EGI72478.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505]
gi|410807239|gb|EKS13219.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. Bsw20308]
Length = 442
Score = 191 bits (486), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 140/416 (33%), Positives = 207/416 (49%), Gaps = 55/416 (13%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F +LG+D RL L +GI +PT IQ ++P L G D+ A++KTGSGKT A+LLP + R
Sbjct: 3 FTDLGIDTRLETQLAHQGITQPTDIQAHAVPTALAGHDIFAQSKTGSGKTLAFLLPAVQR 62
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+ + + SK P L++ PTREL QV++++ LI +K V++ +D
Sbjct: 63 VMKQKA-LSKRDPRVLIVAPTRELATQVFTQLRLLI----AGTAIKAVKILGGENFNDQI 117
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS- 206
AL P V+ATPG + ++ LQ L++L+ DEAD +L G+ + LK ++
Sbjct: 118 KALRNDPQFVVATPGRLADHITKRSLQL----SGLELLIFDEADRILDLGFTEQLKMINE 173
Query: 207 AVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
R Q LL SAT + VD L + +L P +TL + ++ Q +++
Sbjct: 174 QANHRLRQTLLFSATLDHAQVDALSRNLLKKPKQITLSAANEQHSDI----KQTLYLA-- 227
Query: 266 ERDKLLYILTLLKLELVQK---KALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 322
D L + LL+ L Q + +IFT T RL L G KS L +L QN R
Sbjct: 228 --DHLDHKEALLEHFLNQDDVGQCIIFTATRSDTSRLSEALNAKGFKSVALAGDLTQNKR 285
Query: 323 LHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDF 382
L I++ F+ F LI TD RG+D
Sbjct: 286 LDIMDSFSRENFKILITTDVAS---------------------------------RGLDL 312
Query: 383 KNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD 438
+V VINF++P++A YVHRIGRTGRA G ++SLV P + + IK+F+ D+
Sbjct: 313 LSVTHVINFDLPKHAEEYVHRIGRTGRAGFKGNAISLVGPKDWASYLAIKAFLNDE 368
>gi|149713746|ref|XP_001501494.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Equus caballus]
Length = 455
Score = 191 bits (486), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 140/438 (31%), Positives = 223/438 (50%), Gaps = 57/438 (13%)
Query: 1 MGKSKEIPS-KEVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPL 59
M S+E S EV Q EE EE K+F++LG+ L A ++ G KPT IQ +IPL
Sbjct: 1 MAASEEHDSPTEVPQPAVEE---EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPL 57
Query: 60 ILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEV 119
L+G+D++ A+TGSGKT A+ LP+L+ L +P+ ALVL PTREL Q+ +
Sbjct: 58 ALQGRDIIGLAETGSGKTGAFALPILNALLE--TPQRLF---ALVLTPTRELAFQISEQF 112
Query: 120 MALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS 179
AL + ++ + + + ALA P IVIATPG + L +K F+
Sbjct: 113 EAL----GSSIGVQSAVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLE----NTKGFN 164
Query: 180 -DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPY 238
+LK LV+DEAD +L+ +E ++ + VIPR + L SAT + V KL++ L NP
Sbjct: 165 LRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPV 224
Query: 239 ILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFR 298
+ K + + K +QQ+++ + K Y++ +L EL +IF +T + R
Sbjct: 225 KCAVSS----KYQTVEK-LQQYYLFIPSKFKDTYLVYILN-ELAGNSFMIFCSTCNNTQR 278
Query: 299 LKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVD 358
L L G + L+ ++ Q+ RL L +F A L+ATD
Sbjct: 279 TALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVAS-------------- 324
Query: 359 SRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVS 418
RG+D +V V+NF++P ++ Y+HR+GRT RA +G +++
Sbjct: 325 -------------------RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAIT 365
Query: 419 LVSPDEMKIFEEIKSFVG 436
V+ ++++F+ I+ +G
Sbjct: 366 FVTQYDVELFQRIEHLIG 383
>gi|88859266|ref|ZP_01133906.1| ATP-dependent RNA helicase, DEAD box family protein
[Pseudoalteromonas tunicata D2]
gi|88818283|gb|EAR28098.1| ATP-dependent RNA helicase, DEAD box family protein
[Pseudoalteromonas tunicata D2]
Length = 449
Score = 191 bits (486), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 132/413 (31%), Positives = 210/413 (50%), Gaps = 55/413 (13%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
FEE G+D RL+ L +GI PT +QQ +IP+ L G+D+ ++KTGSGKT A+L+P L R
Sbjct: 12 FEEFGIDKRLLTQLAHQGITSPTDVQQQAIPVALSGQDLFVQSKTGSGKTLAFLVPALQR 71
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+ + P SK P A+++ PTREL QV++++ L+ + ++ +D
Sbjct: 72 IIKQ-KPLSKRDPRAVIITPTRELANQVFAQLRLLV----AGSNIVATKILGGDNFNDQI 126
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
AL P +++ATPG L+ + Q F L++L++DEAD ++ G++ ++ ++
Sbjct: 127 KALKKDPHVIVATPG----RLADHIKQKSCFLAGLELLIIDEADRIMDLGFKAEIDLINT 182
Query: 208 -VIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
R Q LL SAT S +D L + +L +P +TL + + ++ Q + +
Sbjct: 183 EANHRLRQTLLFSATLEHSQIDALSRNLLKSPKKVTLSQSNEEHTDI----TQNMFFA-- 236
Query: 266 ERDKLLYILTLLKLELVQ---KKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 322
D LL+ LL L + + ++FT T + +RL + G+ S L ++PQ+ R
Sbjct: 237 --DNLLHKEALLAHFLSKPNIGQCIVFTATREDTYRLSELISGKGLSSQALAGDMPQSKR 294
Query: 323 LHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDF 382
L I++ F+ G LI TD RG+D
Sbjct: 295 LSIMDSFSRGQSQVLITTDIAS---------------------------------RGLDL 321
Query: 383 KNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
NV VINF++P+ A YVHRIGRTGRA G ++S V P + F IK+F+
Sbjct: 322 LNVTHVINFDLPKQAEEYVHRIGRTGRAGFKGHAISFVGPKDWDSFVAIKAFL 374
>gi|187929488|ref|YP_001899975.1| DEAD/DEAH box helicase [Ralstonia pickettii 12J]
gi|404396603|ref|ZP_10988397.1| hypothetical protein HMPREF0989_03294 [Ralstonia sp. 5_2_56FAA]
gi|187726378|gb|ACD27543.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12J]
gi|348613693|gb|EGY63272.1| hypothetical protein HMPREF0989_03294 [Ralstonia sp. 5_2_56FAA]
Length = 493
Score = 191 bits (486), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 130/428 (30%), Positives = 212/428 (49%), Gaps = 54/428 (12%)
Query: 15 AEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGS 74
+E EA A E +F+ GL ++ AL + G KPT IQ A+IP++ G DV+ A+TG+
Sbjct: 2 SEASEAPANESVTFDSFGLHPDVLRALTESGYTKPTPIQAAAIPVVTAGHDVMGAAQTGT 61
Query: 75 GKTFAYLLPLLHRLF---NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQ 131
GKT + LP++H L N S+ ++ AL+L PTREL QVY V + +
Sbjct: 62 GKTAGFSLPIIHNLLPDANTSASPARHPVRALILTPTRELADQVYDNVAKYAKYTALRSA 121
Query: 132 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS-LKILVLDEA 190
+ + + LR + +I++ATPG + +Q +S + S +++LVLDEA
Sbjct: 122 VVFGGVDMNPQTEQLRRGV----EILVATPGRL-----LDHVQQRSVNLSQVRMLVLDEA 172
Query: 191 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD 250
D +L G+ DL+ + ++P Q LL SAT S ++ +L L +P + + +
Sbjct: 173 DRMLDMGFLPDLQRIINLLPAHRQTLLFSATFSPEIKRLAASYLRHPQTIEV-----ARS 227
Query: 251 EVIPKNVQQFWISCSERDKLLYILTLLKLELVQ---KKALIFTNTIDMAFRLKLFLEKFG 307
+NV+Q + + K ++ LL+ Q ++ ++F+N+ RL LE+ G
Sbjct: 228 NATAENVRQVIYTVPDNHKQAALVHLLRQRAEQGLPRQCIVFSNSKIGCSRLARALEREG 287
Query: 308 IKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPK 367
I + ++ + Q R+ LE F G D L+ATD
Sbjct: 288 INANAIHGDKTQTERMQTLEAFKQGTVDVLVATDV------------------------- 322
Query: 368 AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 427
RG+D + VINF++P NA YVHRIGRTGRA +G ++SL +P + ++
Sbjct: 323 --------AARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFAPGDERL 374
Query: 428 FEEIKSFV 435
+I+ +
Sbjct: 375 LADIEKLI 382
>gi|432859445|ref|XP_004069111.1| PREDICTED: probable ATP-dependent RNA helicase DDX27-like [Oryzias
latipes]
Length = 771
Score = 191 bits (486), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 143/436 (32%), Positives = 211/436 (48%), Gaps = 57/436 (13%)
Query: 2 GKSKEIPSKEVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLIL 61
GK ++ + + E+ ++ +++ SF+++ L ++ A+ G ++PT IQ+A +P+ L
Sbjct: 174 GKKRKAAEEAPESFHEDASQFDDQLSFDDMNLSRPILKAITALGFKQPTPIQKACVPVSL 233
Query: 62 EGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMA 121
G+D+ A A TG+GKT A++LP+L RL + P++ LVLVPTREL QV+S
Sbjct: 234 LGRDLCACAATGTGKTAAFMLPVLERLIYK--PRTSQVTRVLVLVPTRELGIQVHSVARQ 291
Query: 122 LIELCKGQVQLKVVQLTSSMPASDLR---AALAGPPDIVIATPGCMPKCLSTGVLQSKSF 178
L + L V L DL+ AAL PD++IATPG + L + +F
Sbjct: 292 LAQFTSITTCLAVGGL-------DLKSQEAALRAGPDVLIATPGRLIDHLHN----TPNF 340
Query: 179 SDS-LKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNP 237
S ++IL+LDEAD +L +E+ +K + + Q +L SAT + +V L + L P
Sbjct: 341 ELSHIEILILDEADRMLDEYFEEQMKEIIRLCSYNRQTMLFSATMTEEVKDLAAVSLKQP 400
Query: 238 YILTLPEVGDVKDEVIPKNVQQFWISCSER--DKLLYILTLLKLELVQKKALIFTNTIDM 295
+ + D V P Q+F R D+ + LL Q ++FT T
Sbjct: 401 VRIFVNSNTD----VAPFLRQEFIRIRPHREGDREAVVAALL-TRTFQDHVMLFTQTRKQ 455
Query: 296 AFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGG 355
A RL + L G+K L+ EL QN RL L F D L+ATD
Sbjct: 456 AHRLHILLGLMGLKVGELHGELSQNQRLENLRRFKDDQIDILVATD-------------- 501
Query: 356 HVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGA 415
RG+D V TVINF MP YVHR+GRT RA +G
Sbjct: 502 -------------------VAARGLDIDGVKTVINFTMPSTVKHYVHRVGRTARAGRSGR 542
Query: 416 SVSLVSPDEMKIFEEI 431
SVSLV E +I +E+
Sbjct: 543 SVSLVGESERRILKEV 558
>gi|261365074|ref|ZP_05977957.1| putative ATP-dependent RNA helicase RhlE [Neisseria mucosa ATCC
25996]
gi|288566497|gb|EFC88057.1| putative ATP-dependent RNA helicase RhlE [Neisseria mucosa ATCC
25996]
Length = 457
Score = 191 bits (486), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 132/418 (31%), Positives = 202/418 (48%), Gaps = 55/418 (13%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F +L LD ++ A+ +G + PT IQ +IP LEG+D++A A+TGSGKT A+LLP L R
Sbjct: 5 FADLNLDKNILSAVRSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
L S K P ALVL PTREL QV +A K + V +
Sbjct: 65 LTKRSEKPGK-GPRALVLTPTRELAAQVEKNALA---YAKNMRWFRTVSIVGGASFGYQT 120
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
AL+ P D+++ATPG + + +G K D L++L+LDEAD +L G+ DD++ +
Sbjct: 121 RALSKPVDLIVATPGRLMDLMQSG----KVDFDRLEVLILDEADRMLDMGFIDDIETIVE 176
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE- 266
P Q LL SAT V KL + + NP ++ + V D +++ + C +
Sbjct: 177 ATPTDRQTLLFSATWDGAVGKLARKLTKNPEVVEVERVDD------QGKIEEQLLYCDDM 230
Query: 267 --RDKLL-YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+++LL +IL ++ + +IFT+T M + L + G + L+ ++PQ R
Sbjct: 231 RHKNRLLDHILRDANID----QCVIFTSTKAMTEVIADDLYEKGFAANCLHGDMPQGWRN 286
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
L + G L+ATD RGID
Sbjct: 287 RTLMDLRKGRCKILVATDV---------------------------------AARGIDVP 313
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENE 441
+ VIN+++P+ A YVHRIGRTGRA TG +++ +E +I+ ++ NE
Sbjct: 314 TITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYIDRKLNE 371
>gi|294140317|ref|YP_003556295.1| DEAD/DEAH box helicase [Shewanella violacea DSS12]
gi|293326786|dbj|BAJ01517.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea
DSS12]
Length = 431
Score = 191 bits (486), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 143/440 (32%), Positives = 221/440 (50%), Gaps = 65/440 (14%)
Query: 16 EEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSG 75
+E ++A+ E +FE+LGL L+ L PTL+Q +IP +L G+D++A A TGSG
Sbjct: 3 QELSSQAKPETTFEQLGLIPELLKRLTLLEYLNPTLVQGKAIPAVLLGRDLLAGAITGSG 62
Query: 76 KTFAYLLPLLHRLFNESSPKSKLAPA-ALVLVPTRELCQQVYSEVMALIELCKGQVQLKV 134
KT A+ LP+L +L S+ SK LVLVPTREL QQV + +L K +LK+
Sbjct: 63 KTAAFALPMLQKLAKSSAKVSKGNQVCGLVLVPTRELAQQVADSFKSYGQLIKP--RLKI 120
Query: 135 VQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLL 194
+ + A+ A+ G D+++ATPG + +S+ ++ D +K LVLDEAD +L
Sbjct: 121 EAVFGGVSANTQMLAMRGGADVLVATPGRLLDLISSNAIK----LDDVKTLVLDEADRML 176
Query: 195 SYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLP--EVGDVKDEV 252
S G+ ++L + A++P+ Q LL SAT +V L +L +P + + E +K +V
Sbjct: 177 SLGFTEELNQVLALLPKHKQTLLFSATFPEEVKTLTDKLLSSPVEIQIQSEEQSTLKQQV 236
Query: 253 IPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAI 312
N R + +L L E ++ L+F + + RL+ L K GI + I
Sbjct: 237 YTVN----------RTRKTALLAHLIKENNWRQVLVFASAKNTCNRLEQKLAKAGIAAQI 286
Query: 313 LNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDS 372
+++ Q +R +LE F G LIATD
Sbjct: 287 FHSDKSQGARTKVLEAFKNGETHVLIATDI------------------------------ 316
Query: 373 EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF---- 428
RGID + + VIN+E+P++ Y+HRIGR+GRA G ++SL+S DE + F
Sbjct: 317 ---AARGIDIEKLPVVINYELPRSPVDYMHRIGRSGRAGEAGLALSLISHDEYQHFKLIE 373
Query: 429 ---------EEIKSFVGDDE 439
E+++ F DDE
Sbjct: 374 KKNKIKLDREQVEGFEADDE 393
>gi|221134543|ref|ZP_03560848.1| DEAD/DEAH box helicase-like protein [Glaciecola sp. HTCC2999]
Length = 452
Score = 191 bits (486), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 136/414 (32%), Positives = 204/414 (49%), Gaps = 49/414 (11%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
+F +L LD R+V L K +PT +Q +IP + G+D++ +KTGSGKTFA++LP++H
Sbjct: 8 TFSDLNLDHRIVTTLTNKHFTEPTPVQANTIPYAMIGRDILCCSKTGSGKTFAFVLPIIH 67
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
RL N+ S + A AL+L PTREL +QVY EV AL+ + QL V +D
Sbjct: 68 RLMNQKSFAKRDA-RALILAPTRELAKQVYLEVRALVSALPLKAQLVV----GGENFNDQ 122
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
AL P I++ T G + LS + F + L+ILV DEAD +L G+ L ++
Sbjct: 123 VKALRHNPQIIVGTAGRVADHLSGRTV----FLNGLEILVYDEADRMLDLGFAKQLLEIN 178
Query: 207 -AVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264
A R Q +L SAT S + L +L P + L + ++ QQ++ +
Sbjct: 179 QAADHRKRQTMLFSATLDSPSLTHLTDTLLKQPEKIMLDSSFTIHSDI----TQQWYFAD 234
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
K + +L E+ +A++F T + RLK L + + + L+ +L QN R H
Sbjct: 235 HIEHKHALLAAILN-EVEHNQAIVFCATREDTVRLKDLLNEANLDAIALSGDLLQNQRAH 293
Query: 325 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 384
++ F +G L+ TD RG+D K
Sbjct: 294 VMSSFISGQHSVLVTTDVAS---------------------------------RGLDMKK 320
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD 438
V V+NF++P+ A YVHRIGRTGRA G +++LV P + F I+ VG D
Sbjct: 321 VSLVVNFDLPKLAEEYVHRIGRTGRAGAKGLAIALVGPRDWTAFTHIQRNVGSD 374
>gi|383935744|ref|ZP_09989177.1| ATP-dependent RNA helicase RhlE [Rheinheimera nanhaiensis E407-8]
gi|383703063|dbj|GAB59268.1| ATP-dependent RNA helicase RhlE [Rheinheimera nanhaiensis E407-8]
Length = 444
Score = 191 bits (485), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 140/414 (33%), Positives = 210/414 (50%), Gaps = 57/414 (13%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF+ L L ++ L ++G PT +Q+ SIP+IL GKDV+A A+TG+GKT A+ LPLL
Sbjct: 30 SFQSLALAAPILRVLQEQGYDAPTPVQRQSIPVILAGKDVLAGAQTGTGKTAAFTLPLLQ 89
Query: 87 RLFNESSPKSKLAPA---ALVLVPTRELCQQVYSEVMALIEL--CKGQVQLKVVQLTSSM 141
++ N +PK +AP LVL PTREL QQVY V + C+ V V +
Sbjct: 90 QMLN--APKV-VAPNQVRVLVLTPTRELAQQVYDNVRKYSQYLECRSAVFYGGVSIRPQY 146
Query: 142 PASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDD 201
D L DI++ATPG + L Q +L++LVLDEAD +L G+ D
Sbjct: 147 --DDAEQGL----DILVATPGRLIDHLH----QKTVDLSALEVLVLDEADRMLDMGFIVD 196
Query: 202 LKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW 261
+K + A +P Q LL SAT S+++ +L +L++P ++ + + V QQ +
Sbjct: 197 IKRIMAKLPAKRQTLLFSATYSNEIKQLADELLNSPQLIEVAATNATAERV----EQQAY 252
Query: 262 ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 321
+ R + L + + Q L+F T A RL L K G+KSA ++ + Q +
Sbjct: 253 LVDRHRKRELLSHVIGRNNWPQ--VLVFVRTKHGADRLAKQLAKDGLKSAAIHGDKSQGA 310
Query: 322 RLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGID 381
R L +F AG L+ATD RG+D
Sbjct: 311 RTKALADFKAGSVRILVATDIA---------------------------------ARGLD 337
Query: 382 FKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ V+N+++PQ YVHRIGRTGRA N+G +++L++PDE+K +EI+ +
Sbjct: 338 INELPYVVNYDLPQVPEDYVHRIGRTGRAGNSGVALTLITPDEIKALQEIERLI 391
>gi|367044830|ref|XP_003652795.1| hypothetical protein THITE_2114564 [Thielavia terrestris NRRL 8126]
gi|347000057|gb|AEO66459.1| hypothetical protein THITE_2114564 [Thielavia terrestris NRRL 8126]
Length = 490
Score = 191 bits (485), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 135/418 (32%), Positives = 214/418 (51%), Gaps = 54/418 (12%)
Query: 26 KSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLL 85
KSF +LG+ L A ++ G ++PT IQ+ SIPL L+G+D++ A+TGSGKT A+ LP+L
Sbjct: 62 KSFRDLGIVDSLCDACDRLGYKRPTPIQEQSIPLALQGRDIIGIAETGSGKTAAFALPIL 121
Query: 86 HRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASD 145
L ++ P ALVL PTREL Q+ AL L + L+ + +
Sbjct: 122 QALLDKPQPLF-----ALVLAPTRELAAQITQAFEALGSL----ISLRCALILGGLDMVQ 172
Query: 146 LRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKA 204
AL P +V+ATPG + L ++K FS +LK LV+DEAD LL + L+
Sbjct: 173 QAIALGKKPHVVVATPGRLLDHLE----KTKGFSLRNLKYLVMDEADRLLDMDFGPILEK 228
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-WIS 263
+ +PR + L SAT SS V+ L++ L +P ++ + K + + VQ + +I
Sbjct: 229 ILKFLPRERRTFLFSATMSSKVESLQRASLRDPLKVS---ISSSKYQTVATLVQNYLFIP 285
Query: 264 CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+D Y++ L E + +IFT T+ R+ + L G+ + L+ L Q++RL
Sbjct: 286 HMHKDT--YLIYLCN-EFAGQTIIIFTRTVLETQRIAILLRTLGMGAIPLHGGLSQSARL 342
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
L +F AG + L+ATD RG+D
Sbjct: 343 GALNKFRAGSRNILVATDV---------------------------------AARGLDIP 369
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENE 441
NV V+NF++PQ++ YVHR+GRT RA +G ++S+V+ +++I+ I++ +G E
Sbjct: 370 NVDCVLNFDLPQDSKTYVHRVGRTARAGKSGHAISIVTQYDIEIWLRIEAALGTKLTE 427
>gi|260577582|ref|ZP_05845521.1| ATP-dependent RNA helicase DeaD [Corynebacterium jeikeium ATCC
43734]
gi|258604306|gb|EEW17544.1| ATP-dependent RNA helicase DeaD [Corynebacterium jeikeium ATCC
43734]
Length = 707
Score = 191 bits (485), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 132/427 (30%), Positives = 209/427 (48%), Gaps = 59/427 (13%)
Query: 7 IPSKEVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDV 66
+P K+ +Q+EE++ SF+ LGL ++ A+ K G + P+ IQ +IP+++EG DV
Sbjct: 61 VPEKDNQQSEEQQP------SFDGLGLPENVLAAVKKVGFEVPSPIQAETIPVLMEGHDV 114
Query: 67 VARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELC 126
V A+TG+GKT A+ LP+L R+ SK P ALVL PTREL QV + E
Sbjct: 115 VGLAQTGTGKTAAFALPILSRI-----DVSKRHPQALVLAPTRELALQVAESFQSFSEHL 169
Query: 127 KGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILV 186
G + V+ + + L IV+ TPG + L G L L+ +V
Sbjct: 170 GG---IHVLPIYGGQAYGVQLSGLRRGAHIVVGTPGRVIDHLEKGSLDIS----ELRFMV 222
Query: 187 LDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVG 246
LDEAD +L+ G+++D++ + P Q L SAT S + +L K L +P +T+
Sbjct: 223 LDEADEMLNMGFQEDVERILEDTPSDKQVALFSATMPSGIRRLSKQYLSDPREITVKAT- 281
Query: 247 DVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALI-FTNTIDMAFRLKLFLEK 305
+ +N++Q ++ S RDKL + + LE+ + +A+I F T + L L
Sbjct: 282 ----QRTSENIEQDYLLVSHRDKLDALTRI--LEITEFEAMIMFVRTKNETEELAERLRA 335
Query: 306 FGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKH 365
G +A +N ++PQN R +++ G D L+ATD
Sbjct: 336 RGFNAAAINGDIPQNLRERTVDQLKDGRLDILVATD------------------------ 371
Query: 366 PKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM 425
RG+D + V N+++P + YVHRIGRTGRA G ++ V+P E
Sbjct: 372 ---------VAARGLDVDRITHVFNYDIPHDTESYVHRIGRTGRAGRKGRAILFVTPRER 422
Query: 426 KIFEEIK 432
++ + I+
Sbjct: 423 RLLKSIE 429
>gi|68536452|ref|YP_251157.1| ATP-dependent RNA helicase [Corynebacterium jeikeium K411]
gi|68264051|emb|CAI37539.1| ATP-dependent RNA helicase [Corynebacterium jeikeium K411]
Length = 713
Score = 191 bits (485), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 132/427 (30%), Positives = 209/427 (48%), Gaps = 59/427 (13%)
Query: 7 IPSKEVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDV 66
+P K+ +Q+EE++ SF+ LGL ++ A+ K G + P+ IQ +IP+++EG DV
Sbjct: 61 VPEKDNQQSEEQQP------SFDGLGLPENVLAAVKKVGFEVPSPIQAETIPVLMEGHDV 114
Query: 67 VARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELC 126
V A+TG+GKT A+ LP+L R+ SK P ALVL PTREL QV + E
Sbjct: 115 VGLAQTGTGKTAAFALPILSRI-----DVSKRHPQALVLAPTRELALQVAESFQSFSEHL 169
Query: 127 KGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILV 186
G + V+ + + L IV+ TPG + L G L L+ +V
Sbjct: 170 GG---IHVLPIYGGQAYGVQLSGLRRGAHIVVGTPGRVIDHLEKGSLDIS----ELRFMV 222
Query: 187 LDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVG 246
LDEAD +L+ G+++D++ + P Q L SAT S + +L K L +P +T+
Sbjct: 223 LDEADEMLNMGFQEDVERILEDTPSDKQVALFSATMPSGIRRLSKQYLSDPREITVKAT- 281
Query: 247 DVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALI-FTNTIDMAFRLKLFLEK 305
+ +N++Q ++ S RDKL + + LE+ + +A+I F T + L L
Sbjct: 282 ----QRTSENIEQDYLLVSHRDKLDALTRI--LEITEFEAMIMFVRTKNETEELAERLRA 335
Query: 306 FGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKH 365
G +A +N ++PQN R +++ G D L+ATD
Sbjct: 336 RGFNAAAINGDIPQNLRERTVDQLKDGRLDILVATD------------------------ 371
Query: 366 PKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM 425
RG+D + V N+++P + YVHRIGRTGRA G ++ V+P E
Sbjct: 372 ---------VAARGLDVDRITHVFNYDIPHDTESYVHRIGRTGRAGRKGRAILFVTPRER 422
Query: 426 KIFEEIK 432
++ + I+
Sbjct: 423 RLLKSIE 429
>gi|358399923|gb|EHK49260.1| hypothetical protein TRIATDRAFT_143973 [Trichoderma atroviride IMI
206040]
Length = 479
Score = 191 bits (485), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 134/422 (31%), Positives = 211/422 (50%), Gaps = 52/422 (12%)
Query: 18 EEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKT 77
+ AEAEE K+F+ELG+ L A + PT IQ SIP+ L+G+DV+ A+TGSGKT
Sbjct: 47 DAAEAEEPKTFKELGIVDSLCEACESLNYKTPTSIQARSIPVALQGRDVIGLAETGSGKT 106
Query: 78 FAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQL 137
A+ LP+L L + P LVL PTREL Q+ AL L + L+ +
Sbjct: 107 AAFALPILQALLEKPQPFF-----GLVLAPTRELAAQIGQSFEALGAL----ISLRCAVI 157
Query: 138 TSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSY 196
+ AL P I++ATPG + L ++K FS SLK LV+DEAD LL
Sbjct: 158 VGGLDMVPQAIALGKKPHIIVATPGRLVDHLE----KTKGFSLRSLKYLVMDEADRLLDM 213
Query: 197 GYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN 256
+ + + IPR + L SAT SS V+ L++ L +P ++ V K + +
Sbjct: 214 DFGPSIDKILKFIPRERRTYLFSATMSSKVESLQRASLRDPARVS---VSSNKYQTV-ST 269
Query: 257 VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAE 316
+ Q ++ + K Y++ L+ E K +IFT T+ A R+ + L G + L+ +
Sbjct: 270 LLQHYVFIPHKRKDTYLIYLVN-EFAGKSIIIFTRTVFEAQRVAILLRTLGFGAIPLHGQ 328
Query: 317 LPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGV 376
L Q++RL L +F G + L+ATD
Sbjct: 329 LSQSARLGALNKFKGGSREILVATDV---------------------------------A 355
Query: 377 VRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
RG+D V V+N ++PQ++ Y+HR+GRT RA +G ++S+ + +++I++ I++ +G
Sbjct: 356 ARGLDIPAVDVVLNHDLPQDSKTYIHRVGRTARAGKSGIAISIATQYDLEIYQRIEAALG 415
Query: 437 DD 438
+
Sbjct: 416 KE 417
>gi|390571862|ref|ZP_10252096.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
terrae BS001]
gi|389936192|gb|EIM98086.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
terrae BS001]
Length = 513
Score = 191 bits (485), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 143/411 (34%), Positives = 203/411 (49%), Gaps = 50/411 (12%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF+ LGL +LV A+N+ G PT IQQ +IP +L G D++A A+TG+GKT + LP+L
Sbjct: 2 SFDSLGLSEQLVRAVNELGYTSPTPIQQQAIPAVLNGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 87 RLFN-ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASD 145
RL +P K AL+L PTREL QV V A + K LK + + +
Sbjct: 62 RLLTMPPAPGGKRVVRALILTPTRELAAQVEESVRAYGKYLK----LKSTVMFGGVGINP 117
Query: 146 LRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS-LKILVLDEADLLLSYGYEDDLKA 204
AL DIV+ATPG + L +Q K+ S L+ILVLDEAD +L G+ D+K
Sbjct: 118 QIDALRRGVDIVVATPG---RLLDH--MQQKTIDLSHLEILVLDEADRMLDMGFIHDIKR 172
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264
+ A +P Q LL SAT S ++ L +L +P ++ + + V K I
Sbjct: 173 VLAKLPPKRQNLLFSATFSDEIKALADNLLDSPALIEVARRNTTAESVAQK------IHP 226
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
+RD+ +LT L + + L+FT T A RL L K GI + ++ Q++R
Sbjct: 227 VDRDRKREMLTHLIKQHNWFQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTR 286
Query: 325 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 384
L EF L+ATD RGID
Sbjct: 287 ALAEFKNNTLQVLVATDI---------------------------------AARGIDIDQ 313
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ V+NF++P YVHRIGRTGRA TG +VSLV DE+++ ++I+ +
Sbjct: 314 LPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLLKDIEKLI 364
>gi|303317380|ref|XP_003068692.1| ATP-dependent rRNA helicase RRP3, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240108373|gb|EER26547.1| ATP-dependent rRNA helicase RRP3, putative [Coccidioides posadasii
C735 delta SOWgp]
Length = 474
Score = 191 bits (485), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 139/434 (32%), Positives = 221/434 (50%), Gaps = 52/434 (11%)
Query: 9 SKEVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVA 68
S E +E+ EA KSF++LG+ L A + G + PT IQ SIPL L+G+D++
Sbjct: 31 SLEETPGNDEKIEATTTKSFKDLGIIDSLCEACDSLGYKAPTQIQAESIPLALQGRDLIG 90
Query: 69 RAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKG 128
A+TGSGKT A+ LP+L L ++ P+S LVL PTREL Q+ + AL L
Sbjct: 91 LAETGSGKTAAFALPILQALMDK--PQSMF---GLVLAPTRELAYQISQQFEALGSL--- 142
Query: 129 QVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVL 187
+ ++ + M AL P I++ATPG + L +K FS SLK LV+
Sbjct: 143 -ISVRCAVIVGGMDMVSQAIALGKKPHIIVATPGRLLDHLE----NTKGFSLRSLKYLVM 197
Query: 188 DEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGD 247
DEAD LL + L + V+P+ + L SAT SS V+ L++ L NP ++ V
Sbjct: 198 DEADRLLDLDFGPILDKILKVLPKERRTYLFSATMSSKVESLQRASLSNPLRVS---VSS 254
Query: 248 VKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFG 307
K + + +Q I + K +Y++ LL E + +IFT T++ RL + L G
Sbjct: 255 NKYQTVSTLLQNCLI-IPHKHKDIYLIYLLN-EFPGQSVIIFTRTVNETQRLAILLRALG 312
Query: 308 IKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPK 367
+ L+ +L Q++RL L +F + + L+ATD
Sbjct: 313 FGAIPLHGQLSQSARLGALGKFRSRSRNILVATDV------------------------- 347
Query: 368 AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 427
RG+D +V V+N+++P ++ Y+HR+GRT RA +G + SLV+ +++I
Sbjct: 348 --------AARGLDIPSVDLVLNYDLPSDSKTYIHRVGRTARAGKSGRAFSLVTQYDVEI 399
Query: 428 FEEIKSFVGDDENE 441
++ I++ +G + +E
Sbjct: 400 WQRIEAALGKELDE 413
>gi|440636791|gb|ELR06710.1| hypothetical protein GMDG_00327 [Geomyces destructans 20631-21]
Length = 787
Score = 191 bits (485), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 137/405 (33%), Positives = 202/405 (49%), Gaps = 53/405 (13%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF+ + L + L G PT IQ +IP+ L GKDVV A TGSGKT A+++P+L
Sbjct: 264 SFQNMSLSRPIHRGLAACGFSAPTPIQAKTIPVALLGKDVVGGAVTGSGKTAAFIVPVLE 323
Query: 87 RLFN--ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
RL + P S++A +L+PTREL Q ++ L + L V L+ + +
Sbjct: 324 RLLYRPKKVPTSRVA----ILMPTRELAIQCHAVATKLASYTDIKFCLAVGGLSLKIQEA 379
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLK 203
+LR PDI+IATPG + S SF+ D+L+ILVLDEAD +L G+ D+L
Sbjct: 380 ELRL----RPDIIIATPGRFIDHMRN----SPSFTVDTLEILVLDEADRMLEDGFADELN 431
Query: 204 ALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-WI 262
+ IP+ Q +L SAT +S VDKL ++ L+ P L + D + + VQ+F +
Sbjct: 432 EILTTIPKSRQTMLFSATMTSSVDKLIRVGLNRPVRLMV----DAQRSTVTTLVQEFVRL 487
Query: 263 SCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 322
DK + L L ++ K ++F A R ++ G+K+A L+ L Q R
Sbjct: 488 RPGREDKRMGYLLYLCQKVFHNKVIVFFRQKKEAHRARVIFGLSGMKAAELHGSLSQEQR 547
Query: 323 LHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDF 382
+ +E F G YL+ATD L S RG+D
Sbjct: 548 IASVEAFRDGKVSYLLATD----------------------------LAS-----RGLDI 574
Query: 383 KNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 427
K V TVIN+E PQ+ Y+HR+GRT RA +G + +L + + K+
Sbjct: 575 KGVDTVINYEAPQSLEIYLHRVGRTARAGRSGRACTLAAEPDRKV 619
>gi|124485198|ref|YP_001029814.1| hypothetical protein Mlab_0371 [Methanocorpusculum labreanum Z]
gi|124362739|gb|ABN06547.1| DEAD/DEAH box helicase domain protein [Methanocorpusculum labreanum
Z]
Length = 656
Score = 191 bits (485), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 131/412 (31%), Positives = 198/412 (48%), Gaps = 51/412 (12%)
Query: 23 EEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLL 82
EE K+F E + L+ A+ G ++PT IQ +IP IL+GKDV +A+TG+GKT A+ +
Sbjct: 2 EETKTFAEFAISEELLQAIGDMGFEEPTPIQAMAIPQILDGKDVTGQAQTGTGKTAAFGI 61
Query: 83 PLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMP 142
P++ RL P +K ALVL PTREL Q E L++ KG L VV + P
Sbjct: 62 PIIERL----DPDNKNV-QALVLSPTRELAIQTAEEFSRLMKYKKG---LNVVPIYGGQP 113
Query: 143 ASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 202
AL G +VI TPG + + G L DS+ + +LDEAD +L G+ +D+
Sbjct: 114 IERQLRALKGTVQVVIGTPGRVIDHIKRGTLH----LDSVTMFILDEADQMLDMGFREDI 169
Query: 203 KALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWI 262
+ + P+ Q +L SAT + + + +P + + + E+ ++Q +I
Sbjct: 170 EDIFRDTPKDRQTILFSATMPQPILDITRRFQRDPQFVKI-----TRKELTVPQIEQTYI 224
Query: 263 SCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 322
ERDKL + L + + AL+F NT L ++ G L+ ++ Q R
Sbjct: 225 EVRERDKLEALCRTLDMN-NPELALVFCNTKRTVDDLMSRMQARGYFVEALHGDMKQQQR 283
Query: 323 LHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDF 382
++ F +G D LIATD RGID
Sbjct: 284 DRVMARFRSGSIDVLIATD---------------------------------VAARGIDV 310
Query: 383 KNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 434
+V V N+++PQ+ YVHRIGRT RA TG SV+ V+P E+ +I+ +
Sbjct: 311 DDVDIVFNYDVPQDVEYYVHRIGRTARAGRTGKSVTFVAPREIYKLRDIQRY 362
>gi|148237396|ref|NP_001085167.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Xenopus laevis]
gi|47938654|gb|AAH72214.1| MGC81303 protein [Xenopus laevis]
Length = 448
Score = 191 bits (485), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 137/427 (32%), Positives = 216/427 (50%), Gaps = 57/427 (13%)
Query: 15 AEEE----EAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARA 70
+EEE E EE K+F +LG+ L A + G ++PT IQ +IP+ L+G+D++ A
Sbjct: 4 SEEEHDVVENGEEEPKTFRDLGVTDVLCEACEQLGWKQPTKIQIEAIPMALQGRDIIGLA 63
Query: 71 KTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQV 130
+TGSGKT A+ LP+L L SP+ ALVL PTREL Q+ + AL +
Sbjct: 64 ETGSGKTGAFALPILQTLLE--SPQRLY---ALVLTPTRELAFQISEQFEAL----GSSI 114
Query: 131 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDE 189
+K + + ALA P IVIATPG + L +K F+ ++K LV+DE
Sbjct: 115 GVKSAVIVGGIDMMSQSLALAKKPHIVIATPGRLIDHLEN----TKGFNLRAIKYLVMDE 170
Query: 190 ADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVK 249
AD +L+ +E ++ + VIPR + L SAT + V KL++ L +P + K
Sbjct: 171 ADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVHKLQRAALKDPVKCAVSS----K 226
Query: 250 DEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIK 309
+ + K +QQF++ + K Y++ +L EL +IF +T + R+ L L G
Sbjct: 227 YQTVEK-LQQFYVFIPSKFKDSYLVYILN-ELAGNSFMIFCSTCNNTQRVALLLRNLGFT 284
Query: 310 SAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAK 369
+ L+ ++ QN RL L +F A L+ATD
Sbjct: 285 AIPLHGQMGQNKRLGALNKFKAKSRSILLATDVAS------------------------- 319
Query: 370 LDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFE 429
RG+D +V VINF++P ++ Y+HR+GRT RA +G +++ VS ++++F+
Sbjct: 320 --------RGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVSQYDVELFQ 371
Query: 430 EIKSFVG 436
I+ +G
Sbjct: 372 RIEHLIG 378
>gi|238021260|ref|ZP_04601686.1| hypothetical protein GCWU000324_01158 [Kingella oralis ATCC 51147]
gi|237868240|gb|EEP69246.1| hypothetical protein GCWU000324_01158 [Kingella oralis ATCC 51147]
Length = 449
Score = 191 bits (485), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 132/408 (32%), Positives = 195/408 (47%), Gaps = 47/408 (11%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F +L LD ++ AL G ++PT IQ SIP L +D++A A+TGSGKT A+LLP L +
Sbjct: 5 FADLNLDKNILSALKSAGYEEPTPIQAQSIPAALANQDIMASAQTGSGKTAAFLLPSLQK 64
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+ S K P LVL PTREL QQV + K ++ V L
Sbjct: 65 IIKRSEQPGK-GPRVLVLTPTRELAQQVEKNAQLYAQNMK---WVRTVTLVGGSSFGQQI 120
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
AL+ P DIV+ATPG + + +G + D L++LVLDEAD +L G+ DD++ + A
Sbjct: 121 KALSRPIDIVVATPGRLMDHMRSGRID----FDRLEVLVLDEADRMLDMGFIDDIETIVA 176
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 267
+P Q LL SAT V KL + + N PEV +++ +++ + C +R
Sbjct: 177 AMPESRQTLLFSATWDGAVGKLARKLTKN------PEVIEIERAEAQGKIEEQLLYCDDR 230
Query: 268 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 327
+ +L + + + +IFT T M L L + G + L+ ++PQ R L
Sbjct: 231 NHKNRLLDHILRDANIDQCVIFTATKAMTETLADELYEKGFAANCLHGDMPQGWRNRTLM 290
Query: 328 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 387
+ G L+ATD RGID +
Sbjct: 291 DVRKGRCKILVATDV---------------------------------AARGIDVPTITH 317
Query: 388 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
VIN+++P+ A YVHRIGRTGRA TG +VS E + +I+ ++
Sbjct: 318 VINYDLPKQAEDYVHRIGRTGRAGRTGIAVSFADAKEYMMVHKIERYI 365
>gi|328870452|gb|EGG18826.1| putative RNA helicase [Dictyostelium fasciculatum]
Length = 507
Score = 191 bits (485), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 131/418 (31%), Positives = 211/418 (50%), Gaps = 56/418 (13%)
Query: 18 EEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKT 77
E ++ +E +F++LG+ +++ A + G +KPT IQ+ SIP + G+D++ A+TGSGKT
Sbjct: 74 ENSKLDENTTFDQLGMHPQIIEACVRMGFKKPTEIQRESIPHAIAGRDIIGLAQTGSGKT 133
Query: 78 FAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQL 137
A+ +P+L +L P AL+L PTREL Q+ + AL + +K L
Sbjct: 134 AAFAIPILQQLLQSPQPL-----FALILSPTRELAFQISQQFEAL----GAVIGVKCGVL 184
Query: 138 TSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSY 196
M LA P I++ TPG + L +K F +LK LV+DEAD LLS
Sbjct: 185 VGGMDVMQQAMVLARKPHIIVGTPGRVMYHLE----NTKGFHLKALKFLVMDEADRLLSM 240
Query: 197 GYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN 256
+E+++ + VIP+ L SAT +S V KL+K L NP + +V K +
Sbjct: 241 DFEEEINKILKVIPKNRNTYLFSATMTSKVAKLQKASLVNPIKV---QVASTKYSTVDTL 297
Query: 257 VQQF-WISCSERD-KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILN 314
VQQ+ +I +D L YIL EL A++F T + RL + L G+ + +N
Sbjct: 298 VQQYCFIPYQHKDCYLTYILN----ELSGNSAIVFVATCAASNRLSVMLRNLGLGAIPIN 353
Query: 315 AELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEF 374
+ Q RL L +F + + + L+ATD
Sbjct: 354 GNMDQTKRLASLNKFKSSVKNILVATDVA------------------------------- 382
Query: 375 GVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432
RG+D +V V+N+++P N+ YVHR+GRT RA +G +++LV+ ++++++ I+
Sbjct: 383 --ARGLDIPSVGLVVNYDIPVNSKEYVHRVGRTARAGQSGRAITLVTQYDVEVYQRIE 438
>gi|333909234|ref|YP_004482820.1| DEAD/DEAH box helicase domain-containing protein [Marinomonas
posidonica IVIA-Po-181]
gi|333479240|gb|AEF55901.1| DEAD/DEAH box helicase domain protein [Marinomonas posidonica
IVIA-Po-181]
Length = 457
Score = 191 bits (485), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 135/411 (32%), Positives = 209/411 (50%), Gaps = 52/411 (12%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF +LGL ++ A+ ++G +P+ IQ +IP +LEG+DV+A A+TG+GKT + LPLL
Sbjct: 2 SFTKLGLSAPILKAIEEQGYTEPSPIQAQAIPAVLEGQDVMAAAQTGTGKTAGFTLPLLE 61
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIEL--CKGQVQLKVVQLTSSMPAS 144
+L KS ALVL PTREL QV V + K V V++ M
Sbjct: 62 KLSAGPLAKSNQV-RALVLTPTRELAAQVAESVKNYGQHLPLKSTVVFGGVKINPQM--- 117
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
AL D++IATPG + + L+ D L++L+LDEAD +L G+ D+K
Sbjct: 118 ---MALRRGADVLIATPGRLLDLYNQNALK----FDQLEVLILDEADRMLDMGFIHDIKK 170
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264
+ A++P+ Q LL SAT S ++ L K +++NP E+ K+V+Q W+
Sbjct: 171 VLAILPKKRQNLLFSATFSPEIRDLAKGLVNNPV-----EISVTPRNATAKSVEQ-WLHP 224
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
++ + + +L L + ++AL+F+ T A ++ LE GI+++ ++ Q +R
Sbjct: 225 VDKKQKIDLLIDLIADGQWQQALVFSRTKHGANKITKQLEDAGIRASAIHGNKSQGARTR 284
Query: 325 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 384
L +F G L+ATD RGID +
Sbjct: 285 ALADFKEGRIRILVATDI---------------------------------AARGIDIEE 311
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ V+NF++P A YVHRIGRTGRA TG ++SLVS DE++ + I+
Sbjct: 312 LPHVVNFDLPDVAEDYVHRIGRTGRANATGQAISLVSADELEQLKAIERLT 362
>gi|336172862|ref|YP_004580000.1| DEAD/DEAH box helicase [Lacinutrix sp. 5H-3-7-4]
gi|334727434|gb|AEH01572.1| DEAD/DEAH box helicase domain protein [Lacinutrix sp. 5H-3-7-4]
Length = 444
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 143/420 (34%), Positives = 207/420 (49%), Gaps = 66/420 (15%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF++LGL L+ A++KKG + P+ IQ +IP +L+G DV+A A+TG+GKT + LPLLH
Sbjct: 2 SFKQLGLSEPLLKAISKKGYENPSPIQAKAIPPVLDGYDVLASAQTGTGKTAGFTLPLLH 61
Query: 87 RLFNESSPKSKLAPA-ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASD 145
L +PK K P ALVL PTREL QVY+ V E + L+ V + +
Sbjct: 62 IL--SENPKEKFRPIRALVLTPTRELAAQVYANVKEYSEF----LNLRSVVIFGGVNQKP 115
Query: 146 LRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL 205
A + D+++ATPG + + G+L K ++I VLDEAD +L G+ D++ +
Sbjct: 116 QVANIRKGVDVLVATPGRLIDLNNQGLLSLK----RVEIFVLDEADRMLDMGFLRDIERV 171
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
++P Q L+ SAT S D+ KL IL NP V+ E P+N IS
Sbjct: 172 MKLMPDKRQNLMFSATFSKDIKKLAFNILKNP----------VQVEATPENTAVEAIS-- 219
Query: 266 ERDKLLYILTLLKLELV--------QKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAEL 317
K+ + LK LV K+ L+FT T A +L + GI +A ++
Sbjct: 220 --QKVYRVAKGLKTGLVIKLISDGNWKQVLVFTRTKHGANKLTKKMISSGITAAAIHGNK 277
Query: 318 PQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVV 377
Q +R L+ F G ++ATD
Sbjct: 278 SQGARTKALKGFKDGTIRVMVATDIA---------------------------------A 304
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RG+D + VINFE+P + YVHRIGRTGRA G ++SLVS DE + +I+ +G+
Sbjct: 305 RGLDIPLLPHVINFEIPNISEDYVHRIGRTGRAGAKGEAISLVSADETQYLRDIEKLIGE 364
>gi|254259821|ref|ZP_04950875.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1710a]
gi|254218510|gb|EET07894.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1710a]
Length = 486
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 132/416 (31%), Positives = 212/416 (50%), Gaps = 54/416 (12%)
Query: 25 EKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPL 84
+ +F++ GL ++ A+ ++G PT IQ +IP++L G+DV+ A+TG+GKT ++ LP+
Sbjct: 10 DATFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPI 69
Query: 85 LHRLF---NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELC--KGQVQLKVVQLTS 139
+ RL N S+ ++ AL+L PTREL QV + V A + + V V +
Sbjct: 70 IQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNP 129
Query: 140 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE 199
M ++LR + +I+IATPG L V Q + ++ILVLDEAD +L G+
Sbjct: 130 QM--AELRRGV----EILIATPG----RLLDHVQQKTANLGQVQILVLDEADRMLDMGFL 179
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
DL+ + ++P+ Q LL SAT S ++ KL L NP + + + V Q
Sbjct: 180 PDLQRILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEV-----ARSNAAASTVTQ 234
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+E DK ++ L++ + K+ ++F N+ A RL +E+ GI +A ++ + Q
Sbjct: 235 IVYDVAEGDKQAAVVKLIR-DRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQ 293
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
+ R+ L+ F G + L+ATD RG
Sbjct: 294 SERMQALDAFKRGEIEALVATDVA---------------------------------ARG 320
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+D + VINF++P NA YVHRIGRTGRA +G ++SL SP+E K +I+ +
Sbjct: 321 LDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLADIEKLI 376
>gi|119186961|ref|XP_001244087.1| hypothetical protein CIMG_03528 [Coccidioides immitis RS]
gi|118595828|sp|Q1E1N5.1|RRP3_COCIM RecName: Full=ATP-dependent rRNA helicase RRP3
gi|392870806|gb|EAS32639.2| ATP-dependent rRNA helicase RRP3 [Coccidioides immitis RS]
Length = 474
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 137/428 (32%), Positives = 219/428 (51%), Gaps = 52/428 (12%)
Query: 15 AEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGS 74
+E+ EA KSF++LG+ L A + G + PT IQ SIPL L+G+D++ A+TGS
Sbjct: 37 GNDEKIEATTTKSFKDLGIIDSLCEACDSLGYKAPTQIQAESIPLALQGRDLIGLAETGS 96
Query: 75 GKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKV 134
GKT A+ LP+L L ++ P+S LVL PTREL Q+ + AL L + ++
Sbjct: 97 GKTAAFALPILQALMDK--PQSMF---GLVLAPTRELAYQISQQFEALGSL----ISVRC 147
Query: 135 VQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLL 193
+ M AL P I++ATPG + L +K FS SLK LV+DEAD L
Sbjct: 148 AVIVGGMDMVSQAIALGKKPHIIVATPGRLLDHLEN----TKGFSLRSLKYLVMDEADRL 203
Query: 194 LSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVI 253
L + L + V+P+ + L SAT SS V+ L++ L NP ++ V K + +
Sbjct: 204 LDLDFGPILDKILKVLPKERRTYLFSATMSSKVESLQRASLSNPLRVS---VSSNKYQTV 260
Query: 254 PKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAIL 313
+Q I + K +Y++ LL E + +IFT T++ RL + L G + L
Sbjct: 261 STLLQNCLI-IPHKHKDIYLIYLLN-EFPGQSVIIFTRTVNETQRLAILLRALGFGAIPL 318
Query: 314 NAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSE 373
+ +L Q++RL L +F + + L+ATD
Sbjct: 319 HGQLSQSARLGALGKFRSRSRNILVATDV------------------------------- 347
Query: 374 FGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKS 433
RG+D +V V+N+++P ++ Y+HR+GRT RA +G + SLV+ +++I++ I++
Sbjct: 348 --AARGLDIPSVDLVLNYDLPSDSKTYIHRVGRTARAGKSGRAFSLVTQYDVEIWQRIEA 405
Query: 434 FVGDDENE 441
+G + +E
Sbjct: 406 ALGKELDE 413
>gi|343493741|ref|ZP_08732041.1| ATP-dependent RNA helicase RhlE [Vibrio nigripulchritudo ATCC
27043]
gi|342825883|gb|EGU60344.1| ATP-dependent RNA helicase RhlE [Vibrio nigripulchritudo ATCC
27043]
Length = 485
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 138/411 (33%), Positives = 200/411 (48%), Gaps = 52/411 (12%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF LGL L+ A+ + G + P+ IQ +IP +++G+DV+A A+TG+GKT + LPLL
Sbjct: 2 SFSSLGLSPELLRAIEELGYETPSPIQAQAIPPVIQGRDVMAAAQTGTGKTAGFTLPLLQ 61
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIEL--CKGQVQLKVVQLTSSMPAS 144
RL S KS ALVL PTREL QV V+ + V V++ M
Sbjct: 62 RLAGGKSAKSNHV-RALVLTPTRELAAQVNGSVVKYGKYLNVNSNVVFGGVKINPQM--M 118
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
LR D+++ATPG + ++ FS L++LVLDEAD +L G+ D+K
Sbjct: 119 KLRKG----SDVLVATPGRLLDLYQQNAVK---FSQ-LEVLVLDEADRMLDMGFIRDIKK 170
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264
+ A++P Q LL SAT S D+ L K ++HNP +++ K V+Q+ +
Sbjct: 171 ILALLPEKRQNLLFSATFSDDIRALAKGLVHNPEQISVSP-----PNATAKTVEQYLYNV 225
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
++ K + L+K E + LIF+ T A RL FLE + +A ++ Q +R+
Sbjct: 226 DKKKKPSILAKLIK-ENDWSQVLIFSKTKHGANRLSRFLESENVSAAAIHGNKSQGARIK 284
Query: 325 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 384
LE F G L+ATD RG+D
Sbjct: 285 ALEHFKTGQVRALVATDI---------------------------------AARGLDIPQ 311
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ V+NFE+P YVHRIGRTGRA +G + SLV DE K I+ +
Sbjct: 312 LPQVVNFELPHVPEDYVHRIGRTGRAGESGKAYSLVCADEAKELFAIERLI 362
>gi|167823349|ref|ZP_02454820.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 9]
gi|226195327|ref|ZP_03790916.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pakistan 9]
gi|225932529|gb|EEH28527.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pakistan 9]
Length = 478
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 132/416 (31%), Positives = 212/416 (50%), Gaps = 54/416 (12%)
Query: 25 EKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPL 84
+ +F++ GL ++ A+ ++G PT IQ +IP++L G+DV+ A+TG+GKT ++ LP+
Sbjct: 10 DATFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPI 69
Query: 85 LHRLF---NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELC--KGQVQLKVVQLTS 139
+ RL N S+ ++ AL+L PTREL QV + V A + + V V +
Sbjct: 70 IQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNP 129
Query: 140 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE 199
M ++LR + +I+IATPG L V Q + ++ILVLDEAD +L G+
Sbjct: 130 QM--AELRRGV----EILIATPG----RLLDHVQQKTANLGQVQILVLDEADRMLDMGFL 179
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
DL+ + ++P+ Q LL SAT S ++ KL L NP + + + V Q
Sbjct: 180 PDLQRILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEV-----ARSNAAASTVTQ 234
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+E DK ++ L++ + K+ ++F N+ A RL +E+ GI +A ++ + Q
Sbjct: 235 IVYDVAEGDKQAAVVKLIR-DRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQ 293
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
+ R+ L+ F G + L+ATD RG
Sbjct: 294 SERMQALDAFKRGEIEALVATDVA---------------------------------ARG 320
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+D + VINF++P NA YVHRIGRTGRA +G ++SL SP+E K +I+ +
Sbjct: 321 LDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLADIEKLI 376
>gi|403286623|ref|XP_003934579.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Saimiri
boliviensis boliviensis]
Length = 547
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 132/417 (31%), Positives = 214/417 (51%), Gaps = 53/417 (12%)
Query: 21 EAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAY 80
E EE K+F++LG+ L A ++ G KPT IQ +IPL L+G+D++ A+TGSGKT A+
Sbjct: 111 EEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAF 170
Query: 81 LLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSS 140
LP+L+ L +P+ ALVL PTREL Q+ + AL + ++ +
Sbjct: 171 ALPILNALLE--TPQRLF---ALVLTPTRELAFQISEQFEAL----GSSIGVQSAVIVGG 221
Query: 141 MPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYE 199
+ + ALA P I+IATPG + L +K F+ +LK LV+DEAD +L+ +E
Sbjct: 222 IDSMSQSLALAKKPHIIIATPGRLIDHLE----NTKGFNLRALKYLVMDEADRILNMDFE 277
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
++ + VIPR + L SAT + V KL++ L NP + K + + K +QQ
Sbjct: 278 TEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVEK-LQQ 332
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
++I + K Y++ +L EL +IF +T + R L L G + L+ ++ Q
Sbjct: 333 YYIFIPSKFKDTYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQ 391
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
+ RL L +F A L+ATD RG
Sbjct: 392 SKRLGSLNKFKAKARSILLATDVAS---------------------------------RG 418
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
+D +V V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+ +G
Sbjct: 419 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG 475
>gi|410901863|ref|XP_003964414.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like [Takifugu
rubripes]
Length = 471
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 132/421 (31%), Positives = 217/421 (51%), Gaps = 55/421 (13%)
Query: 19 EAEAEEE--KSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGK 76
+A+ +E+ K+F++LG+ L A ++ G + PT IQ ++P+ L+GKDV+ A+TGSGK
Sbjct: 29 DADQDEDTPKTFKDLGVTEVLCEACDQLGWKSPTKIQIEAVPVALQGKDVIGLAETGSGK 88
Query: 77 TFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQ 136
T A+ LP+L L +SP+ LVL PTREL Q+ + AL + +K
Sbjct: 89 TGAFALPILQSLL--ASPQR---LHTLVLTPTRELAFQISEQFEAL----GSSIGVKCAV 139
Query: 137 LTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLS 195
+ + LA P IVIATPG + L +K F+ +LK LV+DEAD +L+
Sbjct: 140 IVGGIDMMSQSLVLAKKPHIVIATPGRLIDHLE----NTKGFTLRALKFLVMDEADRILN 195
Query: 196 YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK 255
+E ++ + VIPR + L SAT + V KL++ L +P + D+
Sbjct: 196 MDFETEVDKILKVIPRERRTFLFSATMTKKVQKLQRAALKDPVKCAVSTKYSTVDK---- 251
Query: 256 NVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNA 315
+QQ++I + K Y++++L +L +IF +T + A R+ L L GI + L+
Sbjct: 252 -LQQYYIFIPSKYKDCYLVSILN-DLAGNSFIIFCSTCNNAQRVALLLRNLGITAISLHG 309
Query: 316 ELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFG 375
++ QN RL L +F + L+ATD
Sbjct: 310 QMSQNKRLGALNKFKSKSRSVLLATDVAS------------------------------- 338
Query: 376 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
RG+D +V VIN+++P ++ Y+HR+GRT RA +G S++ V+ ++++F+ I+S +
Sbjct: 339 --RGLDIPHVDCVINYDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRIESLI 396
Query: 436 G 436
G
Sbjct: 397 G 397
>gi|193214029|ref|YP_001995228.1| DEAD/DEAH box helicase [Chloroherpeton thalassium ATCC 35110]
gi|193087506|gb|ACF12781.1| DEAD/DEAH box helicase domain protein [Chloroherpeton thalassium
ATCC 35110]
Length = 431
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 130/406 (32%), Positives = 203/406 (50%), Gaps = 48/406 (11%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
+FE + L+ ++ AL + G + PT IQ A+IP + GKD++A A+TG+GKT A+ LP+LH
Sbjct: 5 NFESISLNPSILRALKELGYETPTAIQAAAIPEAILGKDILATAQTGTGKTAAFALPILH 64
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
RL E+ AP AL+L PTREL Q+ + I L ++L+ + +PA
Sbjct: 65 RL-GENRSYDIRAPRALILTPTRELALQIDNN----IRLYARYLRLRTGVIMGGVPAHPQ 119
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
L PDI++ATPG + G + D ++ VLDEAD +L G+ DD++ +
Sbjct: 120 IKMLRRNPDILVATPGRLIDLFDQGFIGL----DQIQTFVLDEADRMLDMGFIDDIRRIE 175
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
++ PR Q LL SAT S +++ L +L P + + V V D N+ Q + +
Sbjct: 176 SLQPRDHQTLLFSATLSPEIEALASRMLREPVRIEVAPVSSVAD-----NITQKVLFVEQ 230
Query: 267 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
+K + L K + K+AL+FT T A + L + GI + +++ Q +R L
Sbjct: 231 NNKRELLHNLFKENDI-KRALVFTRTKQRANHVAEQLIRLGISADAIHSSKSQRARQRAL 289
Query: 327 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 386
F+ G + L+ATD RGID +
Sbjct: 290 MLFDRGKINVLVATDIA---------------------------------ARGIDVDGIS 316
Query: 387 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432
VIN+E+P + YVHRIGRT RA +G ++S DE+++ + I+
Sbjct: 317 HVINYELPDDPENYVHRIGRTARAGASGTALSFCDADEVRMLKGIE 362
>gi|385208130|ref|ZP_10034998.1| DNA/RNA helicase, superfamily II [Burkholderia sp. Ch1-1]
gi|385180468|gb|EIF29744.1| DNA/RNA helicase, superfamily II [Burkholderia sp. Ch1-1]
Length = 520
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 146/415 (35%), Positives = 205/415 (49%), Gaps = 56/415 (13%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF+ LGL +LV A+++ G PT IQ +IP +L G D++A A+TG+GKT + LP+L
Sbjct: 2 SFDSLGLSEQLVRAVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 87 RLFNESSP-----KSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSM 141
RL SSP K A AL+L PTREL QV V A + K LK + +
Sbjct: 62 RL--NSSPAVANGSGKRAVRALILTPTRELAAQVEESVRAYGKYLK----LKSTVMFGGV 115
Query: 142 PASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS-LKILVLDEADLLLSYGYED 200
+ AL DIV+ATPG + L +Q K+ S L+ILVLDEAD +L G+
Sbjct: 116 GINPQIGALRSGVDIVVATPG---RLLDH--MQQKTIDLSHLEILVLDEADRMLDMGFIH 170
Query: 201 DLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF 260
D+K + A +P Q LL SAT S ++ L +L +P ++ + + V K
Sbjct: 171 DIKRVLAKLPPKRQNLLFSATFSDEIKTLADNLLDSPALIEVARRNTTAESVAQK----- 225
Query: 261 WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 320
I +RDK +LT L + + L+FT T A RL L K GI S ++ Q+
Sbjct: 226 -IHPVDRDKKRELLTHLIKQHNWFQVLVFTRTKHGANRLAEQLTKDGINSLAIHGNKSQS 284
Query: 321 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 380
+R L EF G L+ATD RGI
Sbjct: 285 ARTRALAEFKDGTLQVLVATDI---------------------------------AARGI 311
Query: 381 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
D + V+N+++P YVHRIGRTGRA TG +VSLV DE+++ ++I+ +
Sbjct: 312 DIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLLKDIEKLI 366
>gi|346978651|gb|EGY22103.1| ATP-dependent rRNA helicase rrp-3 [Verticillium dahliae VdLs.17]
Length = 486
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 137/419 (32%), Positives = 213/419 (50%), Gaps = 54/419 (12%)
Query: 25 EKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPL 84
+KSF +LG+ LV A G + PT IQ+ SIPL LEG+DV+ A+TGSGKT A+ LP+
Sbjct: 60 KKSFADLGVVESLVEATEALGYKHPTPIQEKSIPLALEGRDVIGLAETGSGKTAAFALPV 119
Query: 85 LHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
L L + S A+V+ PTREL Q+ AL L + L+ + +
Sbjct: 120 LQALLEKPS-----GLFAVVMAPTRELAAQIAQTFEALGSL----INLRCAVIVGGLDMV 170
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLK 203
AL P +V+ATPG + L ++K FS SLK LVLDEAD LL + +
Sbjct: 171 QQAIALGKKPHVVVATPGRLLDHLE----KTKGFSLRSLKYLVLDEADRLLDMDFGPSID 226
Query: 204 ALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-WI 262
+ IPR L SAT SS V+ L++ L +P +++ G +V+ +Q + +I
Sbjct: 227 KILKFIPRERHTYLFSATMSSKVESLQRASLKDPARVSVQSNG---YQVVSTLLQNYLFI 283
Query: 263 SCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 322
+ +D +Y + L+ + + ++F T+ RL + L G + L+ +L Q++R
Sbjct: 284 PHALKD--VYCVHLIN-SFIGQTTIVFLRTVHDTQRLAILLRTLGFSALPLHGQLSQSAR 340
Query: 323 LHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDF 382
L L +F AG D L+ATD RG+D
Sbjct: 341 LGALNKFRAGSRDILVATDVA---------------------------------ARGLDI 367
Query: 383 KNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENE 441
NV VIN+++PQ++ Y+HR+GRT RA +G ++SLV+ +++I+ I++ +G +E
Sbjct: 368 PNVDVVINYDLPQDSKTYIHRVGRTARAGKSGRALSLVTQYDLEIWLRIEASMGKKLDE 426
>gi|301610482|ref|XP_002934775.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Xenopus (Silurana) tropicalis]
Length = 448
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 137/427 (32%), Positives = 216/427 (50%), Gaps = 57/427 (13%)
Query: 15 AEEE----EAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARA 70
+EEE E EE+K+F ELG+ L + G ++PT IQ +IP+ L+G+D++ A
Sbjct: 4 SEEEHDVVENGEEEQKTFRELGVTDVLCETCEQLGWKQPTKIQIEAIPVALQGRDIIGLA 63
Query: 71 KTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQV 130
+TGSGKT A+ LP+L L SP+ ALVL PTREL Q+ + AL +
Sbjct: 64 ETGSGKTGAFALPILQTLLE--SPQRLY---ALVLTPTRELAFQISEQFEAL----GSTI 114
Query: 131 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDE 189
+K + + ALA P +VIATPG + L +K F+ +LK LV+DE
Sbjct: 115 GVKSAVIVGGIDMMSQSLALAKKPHVVIATPGRLIDHLEN----TKGFNLRALKYLVMDE 170
Query: 190 ADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVK 249
AD +L+ +E ++ + VIPR + L SAT + V KL++ L +P + K
Sbjct: 171 ADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKDPVKCAVSS----K 226
Query: 250 DEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIK 309
+ + K +QQF++ + K Y++ +L EL +IF +T + R+ L L G
Sbjct: 227 YQTVEK-LQQFYVFIPSKFKDSYLVYILN-ELAGNSFMIFCSTCNNTQRVALLLRNLGFT 284
Query: 310 SAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAK 369
+ L+ ++ QN RL L +F A L+ATD
Sbjct: 285 AIPLHGQMSQNKRLGSLNKFKAKSRSILLATDVAS------------------------- 319
Query: 370 LDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFE 429
RG+D +V VINF++P ++ Y+HR+GRT RA +G +++ VS ++++F+
Sbjct: 320 --------RGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVSQYDVELFQ 371
Query: 430 EIKSFVG 436
I+ +G
Sbjct: 372 RIEHLIG 378
>gi|359441576|ref|ZP_09231469.1| probable DEAD-box ATP-dependent RNA helicase SERP1688
[Pseudoalteromonas sp. BSi20429]
gi|392532799|ref|ZP_10279936.1| DEAD/DEAH box helicase [Pseudoalteromonas arctica A 37-1-2]
gi|358036596|dbj|GAA67718.1| probable DEAD-box ATP-dependent RNA helicase SERP1688
[Pseudoalteromonas sp. BSi20429]
Length = 442
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 140/416 (33%), Positives = 207/416 (49%), Gaps = 55/416 (13%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F +LG+D RL L +GI +PT IQ ++P L G D+ A++KTGSGKT A+LLP + R
Sbjct: 3 FTDLGIDTRLETQLAHQGITQPTDIQAHAVPTALAGHDIFAQSKTGSGKTLAFLLPAVQR 62
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+ + + SK P L++ PTREL QV++++ LI +K V++ +D
Sbjct: 63 VMKQKAL-SKRDPRVLIVAPTRELATQVFTQLRLLI----AGTAIKAVKILGGENFNDQI 117
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS- 206
AL P V+ATPG + ++ LQ L++L+ DEAD +L G+ + LK ++
Sbjct: 118 KALRNDPQFVVATPGRLADHITKRSLQL----SGLELLIFDEADRILDLGFTEQLKMINE 173
Query: 207 AVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
R Q LL SAT + VD L + +L P +TL + ++ Q +++
Sbjct: 174 QANHRLRQTLLFSATLDHAQVDALSRNLLKKPKQITLSAANEQHSDI----KQTLYLA-- 227
Query: 266 ERDKLLYILTLLKLELVQK---KALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 322
D L + LL+ L Q + +IFT T RL L G KS L +L QN R
Sbjct: 228 --DHLDHKEALLEHFLNQDDVGQCIIFTATRSDTSRLSEALNAKGFKSVALAGDLTQNKR 285
Query: 323 LHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDF 382
L I++ F+ F LI TD RG+D
Sbjct: 286 LDIMDSFSRENFKILITTDVAS---------------------------------RGLDL 312
Query: 383 KNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD 438
+V VINF++P++A YVHRIGRTGRA G ++SLV P + + IK+F+ D+
Sbjct: 313 LSVTHVINFDLPKHAEEYVHRIGRTGRAGFKGNAISLVGPKDWASYLAIKAFLNDE 368
>gi|90022842|ref|YP_528669.1| dystroglycan-type cadherin-like protein [Saccharophagus degradans
2-40]
gi|89952442|gb|ABD82457.1| DEAD/DEAH box helicase-like protein [Saccharophagus degradans 2-40]
Length = 516
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 141/425 (33%), Positives = 210/425 (49%), Gaps = 64/425 (15%)
Query: 21 EAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAY 80
+A+ F ELGL + A+ ++G + PT IQ +IP +LEG+DV+A A+TG+GKT +
Sbjct: 13 DADPNMKFAELGLCPAIQKAVLEQGYETPTPIQAQAIPPVLEGRDVMAAAQTGTGKTAGF 72
Query: 81 LLPLLHRLFNESSPKSKLAPA---ALVLVPTRELCQQVYSEVMALIEL--CKGQVQLKVV 135
LP+L L K+ P ALVL PTREL QV V + K + V
Sbjct: 73 TLPILEILAEGIENGRKVKPNQARALVLTPTRELAAQVGENVALYGKYLPIKSTIVFGGV 132
Query: 136 QLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLS 195
++ M LR + DI++ATPG + + Q D L++LVLDEAD +L
Sbjct: 133 KINPQM--MKLRGGV----DILVATPGRLMDLYN----QRAVKFDQLEMLVLDEADRMLD 182
Query: 196 YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK 255
G+ D++ + A++P+ Q L+ SAT S D+ +L K I++NP +T V P
Sbjct: 183 MGFIHDIRKIMAILPKKRQNLMFSATFSQDIRELAKSIVNNPVEIT----------VNPP 232
Query: 256 N-----VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 310
N V+Q+ +++K + L+K Q + L+F+ T A +L LE G+++
Sbjct: 233 NSTATRVKQWICPVDKKEKPALLTHLIKTNKWQ-QVLVFSRTKHGANKLVKQLEGSGLRA 291
Query: 311 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL 370
A ++ Q +R L EF G L+ATD
Sbjct: 292 AAIHGNKSQGARTKALAEFKNGTVKILVATDI---------------------------- 323
Query: 371 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE 430
RG+D + V+NF++PQ A YVHRIGRTGRA G +VSLVS DE ++ +E
Sbjct: 324 -----AARGLDIDQLPQVVNFDLPQVAEDYVHRIGRTGRAGAEGNAVSLVSADEFQMLKE 378
Query: 431 IKSFV 435
I+
Sbjct: 379 IERLT 383
>gi|408790906|ref|ZP_11202517.1| DEAD/DEAH box helicase [Leptospira meyeri serovar Hardjo str. Went
5]
gi|408464935|gb|EKJ88659.1| DEAD/DEAH box helicase [Leptospira meyeri serovar Hardjo str. Went
5]
Length = 536
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 133/408 (32%), Positives = 192/408 (47%), Gaps = 48/408 (11%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F EL L AL K G T IQ SIP +EG D+ A+TG+GKT A+LLP LHR
Sbjct: 3 FNELPFHESLTKALEKIGYTDLTPIQAKSIPFAMEGNDLTGLAQTGTGKTMAFLLPTLHR 62
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
L S+ + + P ALVL PTREL Q+ E L+E V +
Sbjct: 63 LL--SATEEEPLPYALVLAPTRELTIQIAEEAKKLLEFT----DFGVATIIGGTDYRSQE 116
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
AL +++ATPG + + L +++K+++LDEAD + G+ DLK +
Sbjct: 117 QALGNKACLIVATPGRLIDFVKNHGLS----LENIKVVILDEADRMFDMGFVQDLKYIFH 172
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 267
Q LL SAT S +V +L L+ P EV ++VI + + Q +
Sbjct: 173 KCKNRKQSLLFSATLSYEVVRLASKYLNEPI-----EVHINPEKVITERIDQTLLHLGRE 227
Query: 268 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 327
+KL Y++ L ++ +IFTN ++ L KFGI + L++EL Q R+ +L
Sbjct: 228 EKLPYLVNSLLNNQIEGLGIIFTNYKMNIPKIVSVLRKFGITATGLSSELDQKKRIRLLR 287
Query: 328 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 387
+F AG + YLIATD RGID +N+
Sbjct: 288 DFKAGKYKYLIATDVAS---------------------------------RGIDIENIDV 314
Query: 388 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
V N+++PQ+A YVHRIGRT RA G S+ S + E I+ ++
Sbjct: 315 VYNYDLPQDAENYVHRIGRTARAGRKGMSIGFCSETDYTELERIERYL 362
>gi|405120234|gb|AFR95005.1| ATP-dependent RNA helicase DRS1 [Cryptococcus neoformans var.
grubii H99]
Length = 813
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 141/421 (33%), Positives = 203/421 (48%), Gaps = 62/421 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF + L L+ AL PT IQ +IPL L G+D++ A TGSGKT A+++P+L
Sbjct: 205 SFAAMNLSRPLLRALTSLQFTAPTPIQARAIPLALLGRDILGSAVTGSGKTAAFMVPILE 264
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
RL K A LVL PTREL Q + AL E KG + ++ L + +
Sbjct: 265 RLCYRDRGKGGAACRVLVLCPTRELAVQCEAVGKALAE--KGGLDVRFALLVGGLSLNAQ 322
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKAL 205
L PDI+IATPG + L+ + SF+ +L +LV+DEAD +L G+ D+L+ +
Sbjct: 323 AHTLRTLPDILIATPGRLIDHLT----NTPSFTLSALDVLVIDEADRMLEAGFTDELEEI 378
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
PR Q +L SAT + VD+L KL L P + + D K Q+F S
Sbjct: 379 IKACPRSRQTMLFSATMTDSVDELVKLSLDKPIRVFV----DPKRNTAKGLTQEFVRIRS 434
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ------ 319
+ + +L L K +++K +IF + +A ++++ FG+K+A L+ L Q
Sbjct: 435 DDSRSPSLLALCK-RTIREKCIIFFRSKALAHQMRIVFGLFGLKAAELHGNLTQEQGSLP 493
Query: 320 -----------NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA 368
+ RL L +F AG DYL+ATD
Sbjct: 494 SKYRIGVMLTSSQRLQALNDFKAGTVDYLLATD--------------------------- 526
Query: 369 KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF 428
L S RG+D K V TVIN++MP A Y HR+GRT RA G S+SLV + K+
Sbjct: 527 -LAS-----RGLDIKGVETVINYDMPGQLAQYTHRVGRTARAGRKGRSISLVGEADRKML 580
Query: 429 E 429
+
Sbjct: 581 K 581
>gi|410963864|ref|XP_003988479.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Felis catus]
Length = 455
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 130/424 (30%), Positives = 217/424 (51%), Gaps = 53/424 (12%)
Query: 14 QAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTG 73
+A + + EE K+F++LG+ L A ++ G KPT IQ +IPL L+G+D++ A+TG
Sbjct: 12 EAPQPAVQEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETG 71
Query: 74 SGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLK 133
SGKT A+ LP+L+ L +P+ ALVL PTREL Q+ + AL + ++
Sbjct: 72 SGKTGAFALPILNALLE--TPQRLF---ALVLTPTRELAFQISEQFEAL----GSSIGVQ 122
Query: 134 VVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADL 192
+ + + ALA P ++IATPG + L +K F+ +LK LV+DEAD
Sbjct: 123 SAVIVGGIDSMSQSLALAKKPHVIIATPGRLIDHLE----NTKGFNLRALKYLVMDEADR 178
Query: 193 LLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEV 252
+L+ +E ++ + VIPR + L SAT + V KL++ L NP + K +
Sbjct: 179 ILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQT 234
Query: 253 IPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAI 312
+ K +QQ+++ + K Y++ +L EL +IF +T + R L L G +
Sbjct: 235 VEK-LQQYYVFIPSKFKDTYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIP 292
Query: 313 LNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDS 372
L+ ++ Q+ RL L +F A L+ATD
Sbjct: 293 LHGQMSQSKRLGSLNKFKAKARSILLATDVAS---------------------------- 324
Query: 373 EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432
RG+D +V V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+
Sbjct: 325 -----RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIE 379
Query: 433 SFVG 436
+G
Sbjct: 380 HLIG 383
>gi|359435077|ref|ZP_09225307.1| probable DEAD-box ATP-dependent RNA helicase SERP1688
[Pseudoalteromonas sp. BSi20652]
gi|357918290|dbj|GAA61556.1| probable DEAD-box ATP-dependent RNA helicase SERP1688
[Pseudoalteromonas sp. BSi20652]
Length = 440
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 141/418 (33%), Positives = 209/418 (50%), Gaps = 55/418 (13%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F +LG+D RL L +GI +PT IQ ++P L G D+ A++KTGSGKT A+LLP + R
Sbjct: 3 FTDLGIDTRLETQLAHQGITQPTDIQAHAVPTALAGHDIFAQSKTGSGKTLAFLLPAVQR 62
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+ + + SK P L++ PTREL QV++++ LI +K V++ +D
Sbjct: 63 VMKQKA-LSKRDPRVLIVAPTRELATQVFTQLRLLI----AGTAIKAVKILGGENFNDQI 117
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS- 206
AL P V+ATPG + ++ LQ L++L+ DEAD +L G+ + LK ++
Sbjct: 118 KALRNDPQFVVATPGRLADHITKRSLQL----SGLELLIFDEADRILDLGFTEQLKMINE 173
Query: 207 AVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
R Q LL SAT + VD L + +L P +TL + ++ Q +++
Sbjct: 174 QANHRLRQTLLFSATLDHAQVDALSRNLLKKPKQITLSAANEQHSDI----KQTLYLA-- 227
Query: 266 ERDKLLYILTLLKLELVQK---KALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 322
D L + LL+ L Q+ + +IFT T RL L G KS L +L QN R
Sbjct: 228 --DHLDHKEALLEHFLNQENVGQCIIFTATRADTSRLSEALNAKGFKSVALAGDLTQNKR 285
Query: 323 LHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDF 382
L I++ F+ F LI TD RG+D
Sbjct: 286 LDIMDSFSRENFKILITTDVAS---------------------------------RGLDL 312
Query: 383 KNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDEN 440
+V VINF++P++A YVHRIGRTGRA G ++SLV P + + IK+F+ D+ N
Sbjct: 313 LSVTHVINFDLPKHAEEYVHRIGRTGRAGFKGNALSLVGPKDWASYLAIKAFLNDELN 370
>gi|224083077|ref|XP_002306942.1| predicted protein [Populus trichocarpa]
gi|222856391|gb|EEE93938.1| predicted protein [Populus trichocarpa]
Length = 744
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 145/419 (34%), Positives = 197/419 (47%), Gaps = 63/419 (15%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF EL L L+ A G KPT IQ A IPL L G+D+ A TGSGKT A+ LP L
Sbjct: 137 SFMELNLSRPLLRACEALGYTKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 196
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
RL PK LA L+L PTREL QV+S + + + + L V L++ + + L
Sbjct: 197 RLLFR--PKRILAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKVQEASL 254
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKAL 205
R+ PDIV+ATPG M L S S D L +L+LDEAD LL G+ ++ L
Sbjct: 255 RSM----PDIVVATPGRMIDHLRN----SMSVDLDDLAVLILDEADRLLELGFNAEIHEL 306
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL-PEV---GDVKDEVIP----KNV 257
+ P+ Q +L SAT + +VD L KL L P L+ P + +EV+ + V
Sbjct: 307 VRLCPKRRQTMLFSATMTEEVDMLIKLSLTKPLRLSADPSAKRPAALTEEVLRLRRMREV 366
Query: 258 QQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAEL 317
Q +L L + KA+IF+ T A RLK+ G K+A L+ L
Sbjct: 367 NQ-----------EAVLLALCSKTFTSKAIIFSGTKQAAHRLKILFGLAGFKAAELHGNL 415
Query: 318 PQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVV 377
Q RL LE F D+LIATD
Sbjct: 416 TQAQRLDALELFRKQEVDFLIATD---------------------------------VAA 442
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
RG+D V TVIN+ P++ Y+HR+GRT RA G +V+ V+ ++ + + I G
Sbjct: 443 RGLDIIGVQTVINYACPRDLTSYIHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAG 501
>gi|167625497|ref|YP_001675791.1| DEAD/DEAH box helicase [Shewanella halifaxensis HAW-EB4]
gi|167355519|gb|ABZ78132.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
HAW-EB4]
Length = 492
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 142/418 (33%), Positives = 208/418 (49%), Gaps = 66/418 (15%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF LGL +++ A+ KG P+ IQ +IP +LEGKDV+A A+TG+GKT + LPLL
Sbjct: 2 SFASLGLSAQILKAVANKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLE 61
Query: 87 RLFNESSPKSKLAPA----ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMP 142
L K APA ALVL PTREL Q+ V E+ + LK + +
Sbjct: 62 LL-----SKGTKAPAKQVRALVLTPTRELAAQIGESV----EVYGQFLPLKSAVIFGGVG 112
Query: 143 ASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 202
L DI++ATPG + L ++ SFS L++LVLDEAD +L G+ D+
Sbjct: 113 IGPQITKLNRGVDILVATPG---RLLDLYNQRAVSFSQ-LEVLVLDEADRMLDMGFIHDI 168
Query: 203 KALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----V 257
K + A++P Q L+ SAT S D+ +L K +++NP V+ V P+N V
Sbjct: 169 KKILAILPAKRQNLMFSATFSDDIRQLAKGLVNNP----------VEISVTPRNATANTV 218
Query: 258 QQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAEL 317
+Q+ K+ ++ L+K Q + L+F+ T A RL LE GI +A ++
Sbjct: 219 KQWICPVDHGQKVAVLIELIKQNDWQ-QVLVFSRTKHGANRLAKNLEAKGITAAAIHGNK 277
Query: 318 PQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVV 377
Q +R L +F +G L+ATD
Sbjct: 278 SQGARTKALADFKSGAVRVLVATDI---------------------------------AA 304
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
RG+D + V+NF++P YVHRIGRTGRA +G +VSLVS +E+K+ +I+ +
Sbjct: 305 RGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGHAVSLVSSEEIKLLRDIELLI 362
>gi|206560771|ref|YP_002231536.1| putative ATP-dependent RNA helicase 2 [Burkholderia cenocepacia
J2315]
gi|444363801|ref|ZP_21164182.1| DEAD/DEAH box helicase [Burkholderia cenocepacia BC7]
gi|444368994|ref|ZP_21168777.1| DEAD/DEAH box helicase [Burkholderia cenocepacia K56-2Valvano]
gi|198036813|emb|CAR52713.1| putative ATP-dependent RNA helicase 2 [Burkholderia cenocepacia
J2315]
gi|443594238|gb|ELT62906.1| DEAD/DEAH box helicase [Burkholderia cenocepacia BC7]
gi|443599860|gb|ELT68103.1| DEAD/DEAH box helicase [Burkholderia cenocepacia K56-2Valvano]
Length = 494
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 130/414 (31%), Positives = 212/414 (51%), Gaps = 50/414 (12%)
Query: 25 EKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPL 84
+ +F++ GL ++ A+ ++G PT IQ +IP++L G+DV+ A+TG+GKT ++ LP+
Sbjct: 10 DATFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPI 69
Query: 85 LHRLF---NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSM 141
+ RL N S+ ++ AL+L PTREL QV + V A + + + + +
Sbjct: 70 IQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNP 129
Query: 142 PASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDD 201
+++LR + +I+IATPG L V Q + ++ILVLDEAD +L G+ D
Sbjct: 130 QSAELRRGV----EILIATPG----RLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPD 181
Query: 202 LKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW 261
L+ + ++P+ Q LL SAT S ++ KL L NP + + + NV Q
Sbjct: 182 LQRILNLLPKERQTLLFSATFSGEIKKLASTYLRNPQTIEV-----ARSNSTNANVTQIV 236
Query: 262 ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 321
+E DK ++ LL+ + K+ ++F N+ A RL LE+ G+ ++ ++ + Q
Sbjct: 237 YDVAEGDKQAAVVQLLR-DRGLKQVIVFCNSKIGASRLARNLERDGVVASAIHGDKTQIE 295
Query: 322 RLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGID 381
R+ L+ F G + L+ATD RG+D
Sbjct: 296 RMQALDAFKRGEIEALVATDV---------------------------------AARGLD 322
Query: 382 FKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ VINF++P +A YVHRIGRTGRA TG ++SL SP+E K +I+ +
Sbjct: 323 IAELPAVINFDLPFSAEDYVHRIGRTGRAGATGDALSLCSPNERKQLADIEKLI 376
>gi|302817632|ref|XP_002990491.1| hypothetical protein SELMODRAFT_131776 [Selaginella moellendorffii]
gi|300141659|gb|EFJ08368.1| hypothetical protein SELMODRAFT_131776 [Selaginella moellendorffii]
Length = 469
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 136/416 (32%), Positives = 209/416 (50%), Gaps = 58/416 (13%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SFEELG+ LV A + G++ PT +Q+A +P IL+GKDV+ A+TGSGKT A+ LP+L
Sbjct: 54 SFEELGVAEWLVGACKELGMRHPTPVQRACVPQILKGKDVLGMAQTGSGKTAAFALPILQ 113
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
RL ++ ALV+ PTREL Q+ + AL V L+ + M +
Sbjct: 114 RL-----GENPYGIFALVMTPTRELAFQISDQFKAL----GAGVHLRCAVVVGGMDMTTQ 164
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
L P +VIATPG + + + + +FS + K LVLDEADLLL G++D+L+ +
Sbjct: 165 AQILMERPHVVIATPGRIKAHIGSDPDIAAAFSKT-KFLVLDEADLLLDRGFQDELQTIF 223
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYI------LTLPEVGDVKDEVIPKNVQQF 260
I + Q LL SAT + D+ L+ L H + L E D + +P V+
Sbjct: 224 DGISKQRQTLLFSATMTGDLQALRDLFGHRAFFYQAYEGLKTVESLDQRYIFMPGKVKNV 283
Query: 261 WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 320
+++ Y+L L+LE + + +IF + L L L++ GI + L++ Q
Sbjct: 284 YLT--------YLLENLELEDI-RSVIIFVSRCRTCHLLSLILDELGISAVALHSVKTQP 334
Query: 321 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 380
RL L +F +G LIATD RG+
Sbjct: 335 QRLAALNQFKSGQATILIATDVAS---------------------------------RGL 361
Query: 381 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
D V V+N+++P+ YVHR+GRT RA G ++SLV+ ++++ E++SF+G
Sbjct: 362 DIPTVDLVVNYDIPRFTKDYVHRVGRTARAGRGGRAISLVTELDVELVHEVESFLG 417
>gi|421868011|ref|ZP_16299663.1| ATP-dependent RNA helicase Bcep18194_A5658 [Burkholderia
cenocepacia H111]
gi|358071942|emb|CCE50541.1| ATP-dependent RNA helicase Bcep18194_A5658 [Burkholderia
cenocepacia H111]
Length = 494
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 130/414 (31%), Positives = 212/414 (51%), Gaps = 50/414 (12%)
Query: 25 EKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPL 84
+ +F++ GL ++ A+ ++G PT IQ +IP++L G+DV+ A+TG+GKT ++ LP+
Sbjct: 10 DATFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPI 69
Query: 85 LHRLF---NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSM 141
+ RL N S+ ++ AL+L PTREL QV + V A + + + + +
Sbjct: 70 IQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNP 129
Query: 142 PASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDD 201
+++LR + +I+IATPG L V Q + ++ILVLDEAD +L G+ D
Sbjct: 130 QSAELRRGV----EILIATPG----RLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPD 181
Query: 202 LKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW 261
L+ + ++P+ Q LL SAT S ++ KL L NP + + + NV Q
Sbjct: 182 LQRILNLLPKERQTLLFSATFSGEIKKLASTYLRNPQTIEV-----ARSNSTNANVTQIV 236
Query: 262 ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 321
+E DK ++ LL+ + K+ ++F N+ A RL LE+ G+ ++ ++ + Q
Sbjct: 237 YDVAEGDKQAAVVQLLR-DRGLKQVIVFCNSKIGASRLARNLERDGVVASAIHGDKTQIE 295
Query: 322 RLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGID 381
R+ L+ F G + L+ATD RG+D
Sbjct: 296 RMQALDAFKRGEIEALVATDV---------------------------------AARGLD 322
Query: 382 FKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ VINF++P +A YVHRIGRTGRA TG ++SL SP+E K +I+ +
Sbjct: 323 IAELPAVINFDLPFSAEDYVHRIGRTGRAGATGDALSLCSPNERKQLADIEKLI 376
>gi|374320874|ref|YP_005074003.1| ATP-dependent RNA helicase [Paenibacillus terrae HPL-003]
gi|357199883|gb|AET57780.1| ATP-dependent RNA helicase [Paenibacillus terrae HPL-003]
Length = 541
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 129/415 (31%), Positives = 201/415 (48%), Gaps = 58/415 (13%)
Query: 26 KSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLL 85
K+F LG++ V AL ++GI PT +QQ SIPL++EG+DV+A A TG+GKT A+LLP+L
Sbjct: 2 KNFAALGVEQHWVDALKEQGITAPTPVQQESIPLLMEGQDVIAEAHTGTGKTLAFLLPIL 61
Query: 86 HRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASD 145
++ + K P ALV+ PTREL Q+ E L + L ++ +
Sbjct: 62 QKMNLD-----KRHPQALVIAPTRELALQITQEANI---LAATEPSLSLLAVYGGQDVER 113
Query: 146 LRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL 205
L G ++I TPG + L G L +K+LVLDEAD +L G+ +D++ +
Sbjct: 114 QLRKLKGGAQLIIGTPGRLLDHLRRGTLD----LSGVKMLVLDEADQMLHMGFLNDVETI 169
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVK----DEVIPKNVQQFW 261
+P Q +L SAT + + KL ++ ++ P DVK V ++Q
Sbjct: 170 LQEVPYRRQTMLFSATMPAGIRKLARVYMNEPV--------DVKVKSASSVPVSQIRQVV 221
Query: 262 ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 321
+ ++R K ++ +L + A+IF T A L L++ G +S L+ +L QN
Sbjct: 222 VQTTDRGKQQALVDMLNADR-PYLAVIFCRTKRRAAALNEQLQEMGFESGELHGDLSQNK 280
Query: 322 RLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGID 381
R +++ F L+ATD RG+D
Sbjct: 281 REQVMKAFREAKLQLLVATDV---------------------------------AARGLD 307
Query: 382 FKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
+ V V N++MPQ+A Y+HRIGRTGRA G +V+L +P ++ I+ G
Sbjct: 308 VEGVTHVFNYDMPQDAESYIHRIGRTGRAGGKGVAVTLATPRDVPELRNIQKVAG 362
>gi|340362171|ref|ZP_08684568.1| ATP-dependent RNA helicase RhlE [Neisseria macacae ATCC 33926]
gi|339887772|gb|EGQ77294.1| ATP-dependent RNA helicase RhlE [Neisseria macacae ATCC 33926]
Length = 457
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 131/413 (31%), Positives = 202/413 (48%), Gaps = 55/413 (13%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F +L LD ++ A+ +G + PT IQ +IP LEG+D++A A+TGSGKT A+LLP L R
Sbjct: 5 FADLNLDKNILSAVRSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
L S K P ALVL PTREL QV +A K + V +
Sbjct: 65 LTKRSEKPGK-GPRALVLTPTRELAAQVEKNALA---YAKNMRWFRTVSIVGGASFGYQT 120
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
AL+ P D+++ATPG + + +G + F+ L++L+LDEAD +L G+ DD++ +
Sbjct: 121 RALSKPVDLIVATPGRLMDLMQSGKV---DFA-RLEVLILDEADRMLDMGFIDDIETIVE 176
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE- 266
P Q LL SAT V KL + + NP I+ + V D +++ + C +
Sbjct: 177 ATPTDRQTLLFSATWDGAVGKLARKLTKNPEIIEVERVDD------QGKIEEQLLYCDDM 230
Query: 267 --RDKLL-YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+++LL +IL ++ + +IFT+T M + L + G + L+ ++PQ R
Sbjct: 231 RHKNRLLDHILRDANID----QCVIFTSTKAMTEVIADDLYEKGFAANCLHGDMPQGWRN 286
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
L + G L+ATD RGID
Sbjct: 287 RTLMDLRKGRCKILVATDV---------------------------------AARGIDVP 313
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
+ VIN+++P+ A YVHRIGRTGRA TG +++ +E +I+ ++G
Sbjct: 314 TITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYIG 366
>gi|348689923|gb|EGZ29737.1| hypothetical protein PHYSODRAFT_309945 [Phytophthora sojae]
Length = 482
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 130/417 (31%), Positives = 211/417 (50%), Gaps = 63/417 (15%)
Query: 26 KSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLL 85
KSF+ELG+D + A+ G +P+ IQQ +IP L GKD++ A+TGSGKT A+++P+L
Sbjct: 31 KSFQELGVDAAICEAIEAVGWSQPSKIQQQAIPHGLAGKDIIGLAETGSGKTGAFVIPIL 90
Query: 86 HRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASD 145
L +P+ ALVL PTREL Q+ + AL + LK + +
Sbjct: 91 QSLLR--NPQRLY---ALVLAPTRELAYQIGEQFEAL----GASIGLKCACVVGGIDMMQ 141
Query: 146 LRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKA 204
+ ALA P +VIATPG + L +K FS ++K LVLDEAD +LS +E+++
Sbjct: 142 QQVALARKPHVVIATPGRLVDHLEN----TKGFSLRTMKFLVLDEADRMLSMDFEEEINQ 197
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEV-----IPKNVQQ 259
+ ++P L SAT +S V KL++ L +P VK E+ P+ ++Q
Sbjct: 198 IVQLMPAERNTYLFSATMTSKVRKLQRASLKDP----------VKVEITHKFATPETLKQ 247
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
++ + K Y+ +L E+ + LIF +T + ++ L L G ++ L+ ++PQ
Sbjct: 248 HYLFIPAKFKDCYLAYVLN-EVAGQSVLIFASTCNGTQKVTLMLRNLGFQAICLHGQMPQ 306
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
SRL L +F A + L+ TD RG
Sbjct: 307 PSRLGALNKFKAKARNVLVCTDVAS---------------------------------RG 333
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
+D +V VIN+++P + Y+HR+GRT RA G ++S V+ ++++++ I+ +G
Sbjct: 334 LDIPSVDVVINYDIPTHGKDYIHRVGRTARAGRAGVAISFVTQYDVELYQRIEHLLG 390
>gi|349609420|ref|ZP_08888815.1| hypothetical protein HMPREF1028_00790 [Neisseria sp. GT4A_CT1]
gi|348611981|gb|EGY61609.1| hypothetical protein HMPREF1028_00790 [Neisseria sp. GT4A_CT1]
Length = 457
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 131/412 (31%), Positives = 201/412 (48%), Gaps = 55/412 (13%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F +L LD ++ A+ +G + PT IQ +IP LEG+D++A A+TGSGKT A+LLP L R
Sbjct: 5 FADLNLDKNILSAVRSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
L S K P ALVL PTREL QV +A K + V +
Sbjct: 65 LTKRSEKPGK-GPRALVLTPTRELAAQVEKNALA---YAKNMRWFRTVSIVGGASFGYQT 120
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
AL+ P D+++ATPG + + +G + F+ L++L+LDEAD +L G+ DD++ +
Sbjct: 121 RALSKPVDLIVATPGRLMDLMQSGKV---DFA-RLEVLILDEADRMLDMGFIDDIETIVE 176
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE- 266
P Q LL SAT V KL + + NP I+ + V D +++ + C +
Sbjct: 177 ATPTDRQTLLFSATWDGAVGKLARKLTKNPEIIEVERVDD------QGKIEEQLLYCDDM 230
Query: 267 --RDKLL-YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+++LL YIL ++ + +IFT+T M + L + G + L+ ++PQ R
Sbjct: 231 RHKNRLLDYILRDANID----QCVIFTSTKAMTEVIADDLYEKGFAANCLHGDMPQGWRN 286
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
L + G L+ATD RGID
Sbjct: 287 RTLMDLRKGRCKILVATDV---------------------------------AARGIDVP 313
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ VIN+++P+ A YVHRIGRTGRA TG +++ +E +I+ ++
Sbjct: 314 TITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYI 365
>gi|438000180|ref|YP_007183913.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
blastocrithidii (ex Strigomonas culicis)]
gi|451813113|ref|YP_007449566.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
blastocrithidii TCC012E]
gi|429339414|gb|AFZ83836.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
blastocrithidii (ex Strigomonas culicis)]
gi|451779082|gb|AGF49962.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
blastocrithidii TCC012E]
Length = 447
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 135/402 (33%), Positives = 202/402 (50%), Gaps = 52/402 (12%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF E GLD +V L++ G KPTLIQ+++IP IL G D + A+TG+GKT A++LP+++
Sbjct: 15 SFREFGLDFSIVSVLDEIGYVKPTLIQESAIPNILSGADFIGAAQTGTGKTAAFVLPIIN 74
Query: 87 RLF----NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMP 142
RL N SP L +L+LVPTREL QVY ++L L+ + L +
Sbjct: 75 RLVPFANNSISPARHLL-RSLILVPTRELADQVYE----CVKLYSKNTNLRSLVLFGGVD 129
Query: 143 ASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 202
+ L +I++ATPG L ++Q ++ ILVLDEAD +L G+ D+
Sbjct: 130 LEHQKDLLHKGCEILVATPG----RLIAHIIQRNVSLVNVDILVLDEADRMLDMGFIPDV 185
Query: 203 KALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWI 262
+ ++P+ Q LL SAT S DV KL L +P + + D V K + +
Sbjct: 186 DRIVRMLPKKRQSLLFSATFSEDVRKLGLTYLKDPVEADVTVPNSIADTV--KQISYKVL 243
Query: 263 SCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 322
S + D +L+++ ++ K ++FTNT A +L +L I + ++ + Q R
Sbjct: 244 SNEKYDAILFLIRSTEM----KHVIVFTNTKIGANKLASYLSSNKISADCIHGDRTQKER 299
Query: 323 LHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDF 382
+ IL +F + D L+ATD V RG+D
Sbjct: 300 IRILNDFKSSNLDVLVATD---------------------------------VVARGLDI 326
Query: 383 KNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE 424
+ V+NF++P NA YVHRIGRTGRA N G +VSL +E
Sbjct: 327 AGISHVVNFDIPHNAEDYVHRIGRTGRANNEGIAVSLYYSEE 368
>gi|73997167|ref|XP_534885.2| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Canis lupus familiaris]
Length = 456
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 135/430 (31%), Positives = 221/430 (51%), Gaps = 57/430 (13%)
Query: 8 PSKEVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVV 67
P++E + A +EE E K+F++LG+ L A ++ G KPT IQ +IPL L+G+D++
Sbjct: 10 PAEEPQPAVQEE----ETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDII 65
Query: 68 ARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCK 127
A+TGSGKT A+ LP+L+ L +P+ ALVL PTREL Q+ + AL
Sbjct: 66 GLAETGSGKTGAFALPILNALLE--TPQRLF---ALVLTPTRELAFQISEQFEAL----G 116
Query: 128 GQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILV 186
+ ++ + + + ALA P IVIATPG + L +K F+ +LK LV
Sbjct: 117 SSIGVQSAVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLE----NTKGFNLRALKYLV 172
Query: 187 LDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVG 246
+DEAD +L+ +E ++ + VIPR + L SAT + V KL++ L NP +
Sbjct: 173 MDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS-- 230
Query: 247 DVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKF 306
K + + K +QQ+++ + K Y++ +L EL +IF +T + R L L
Sbjct: 231 --KYQTVEK-LQQYYLFIPSKFKDTYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNL 286
Query: 307 GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHP 366
G + L+ ++ Q+ RL L +F A L+ATD
Sbjct: 287 GFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVAS---------------------- 324
Query: 367 KAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMK 426
RG+D +V V+NF++P ++ Y+HR+GRT RA +G +++ V+ +++
Sbjct: 325 -----------RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVE 373
Query: 427 IFEEIKSFVG 436
+F+ I+ +G
Sbjct: 374 LFQRIEHLIG 383
>gi|421540618|ref|ZP_15986763.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 93004]
gi|402318772|gb|EJU54288.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 93004]
Length = 462
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 129/413 (31%), Positives = 202/413 (48%), Gaps = 55/413 (13%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F +L LD ++ A++ +G + PT IQ +IP LEG+D++A A+TGSGKT A+LLP L R
Sbjct: 5 FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
L S K P ALVL PTREL QV +A K + V +
Sbjct: 65 LTKRSEKPGK-GPRALVLTPTRELAAQVEKNALA---YAKNMRWFRTVSIVGGASFGYQT 120
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
AL+ P D+++ATPG + + +G K + L++L+LDEAD +L G+ DD++ +
Sbjct: 121 RALSKPVDLIVATPGRLMDLMQSG----KVDFERLEVLILDEADRMLDMGFIDDIETIVE 176
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE- 266
P Q LL SAT V KL + + +P ++ + V D +++ + C +
Sbjct: 177 ATPSDRQTLLFSATWDGAVGKLARKLTKDPEVIEVERVDD------QGKIEEQLLYCDDM 230
Query: 267 --RDKLL-YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+++LL +IL ++ + +IFT+T M + L + G + L+ ++PQ R
Sbjct: 231 RHKNRLLDHILRDANID----QCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRN 286
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
L + G L+ATD RGID
Sbjct: 287 RTLMDLRKGRCKILVATDV---------------------------------AARGIDVP 313
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
+ VIN+++P+ A YVHRIGRTGRA TG +++ +E +I+ ++G
Sbjct: 314 TITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYIG 366
>gi|163749734|ref|ZP_02156980.1| putative ATP-dependent RNA helicase [Shewanella benthica KT99]
gi|161330547|gb|EDQ01505.1| putative ATP-dependent RNA helicase [Shewanella benthica KT99]
Length = 431
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 141/438 (32%), Positives = 219/438 (50%), Gaps = 65/438 (14%)
Query: 18 EEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKT 77
+ ++A + +FE+LGL L+ L PTL+Q +IP +L G+D++A A TGSGKT
Sbjct: 5 DSSQATSDTTFEQLGLIPELLKRLTLLEYLNPTLVQGKTIPAVLSGRDLLAGAITGSGKT 64
Query: 78 FAYLLPLLHRLFNESSPKSKLAP-AALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQ 136
A+ LP+L +L S+ SK + LVLVPTREL QQV + +L K +LK+
Sbjct: 65 AAFALPMLQKLAKSSAKVSKGNQVSGLVLVPTRELAQQVAESFKSYGQLIKP--RLKIEA 122
Query: 137 LTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSY 196
+ + A+ A+ G D+++ATPG + +S+ ++ D +K LVLDEAD +LS
Sbjct: 123 VFGGVSANTQMLAMRGGADVLVATPGRLLDLISSNAIK----LDDVKTLVLDEADRMLSL 178
Query: 197 GYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLP--EVGDVKDEVIP 254
G+ ++L + A++P+ Q LL SAT +V L +L P + + E +K +V
Sbjct: 179 GFTEELNQVLALLPKHKQTLLFSATFPEEVKTLTDNLLSTPVEIQIQSEEQTTLKQQVYT 238
Query: 255 KNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILN 314
N R++ +L L E ++ L+F + + RL+ L K GI + I +
Sbjct: 239 VN----------RNRKTALLAHLIKENDWRQVLVFASAKNTCNRLEQKLAKAGIAAQIFH 288
Query: 315 AELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEF 374
++ Q +R +LE F G LIATD
Sbjct: 289 SDKSQGARTKVLEAFKNGETHVLIATDI-------------------------------- 316
Query: 375 GVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF------ 428
RGID + VIN+E+P++ Y+HRIGR+GRA G ++SL+S DE + F
Sbjct: 317 -AARGIDIDKLPVVINYELPRSPVDYMHRIGRSGRAGEAGLALSLISHDEYQHFKLIEKK 375
Query: 429 -------EEIKSFVGDDE 439
E+++ F DDE
Sbjct: 376 NKIKLDREQVEGFEADDE 393
>gi|117646246|emb|CAL38590.1| hypothetical protein [synthetic construct]
gi|208967637|dbj|BAG72464.1| apolipoprotein L domain containing 1 [synthetic construct]
Length = 455
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 132/424 (31%), Positives = 216/424 (50%), Gaps = 53/424 (12%)
Query: 14 QAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTG 73
+A + E EE K+F++LG+ L A ++ G KPT IQ +IPL L+G+D++ A+TG
Sbjct: 12 EASQPIVEEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETG 71
Query: 74 SGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLK 133
GKT A+ LP+L+ L +P+ ALVL PTREL Q+ + AL + ++
Sbjct: 72 PGKTGAFALPILNALLE--TPQRLF---ALVLTPTRELAFQISEQFEAL----GSSIGVQ 122
Query: 134 VVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADL 192
+ + + ALA P I+IATPG + L +K F+ +LK LV+DEAD
Sbjct: 123 SAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLE----NTKGFNLRALKYLVMDEADR 178
Query: 193 LLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEV 252
+L+ +E ++ + VIPR + L SAT + V KL++ L NP + K +
Sbjct: 179 ILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQT 234
Query: 253 IPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAI 312
+ K +QQ++I + K Y++ +L EL +IF +T + R L L G +
Sbjct: 235 VEK-LQQYYIFIPSKFKDTYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIP 292
Query: 313 LNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDS 372
L+ ++ Q+ RL L +F A L+ATD
Sbjct: 293 LHGQMSQSKRLGSLNKFKAKARSILLATDVAS---------------------------- 324
Query: 373 EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432
RG+D +V V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+
Sbjct: 325 -----RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIE 379
Query: 433 SFVG 436
+G
Sbjct: 380 HLIG 383
>gi|375111191|ref|ZP_09757402.1| DEAD/DEAH box helicase [Alishewanella jeotgali KCTC 22429]
gi|374568733|gb|EHR39905.1| DEAD/DEAH box helicase [Alishewanella jeotgali KCTC 22429]
Length = 449
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 136/410 (33%), Positives = 213/410 (51%), Gaps = 49/410 (11%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F+++GLD RL+ ++ G +PT IQQ +IP ++ G+D++ +KTGSGKT AYLLP++ R
Sbjct: 8 FQDMGLDPRLLRSVQHLGFARPTEIQQEAIPAVMVGRDLLVSSKTGSGKTLAYLLPMMQR 67
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
L +S SK AL+L PTREL +QVY++ + L + V L +D
Sbjct: 68 LL-KSRALSKQDARALILTPTRELAKQVYAQ----LRLFVANTPVTAVLLVGGENFNDQE 122
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS- 206
L PDI++ATPG L F L++L+LDEAD +L G+ L ++
Sbjct: 123 KLLKRQPDIIVATPGRFVDHLE----HKSVFLQGLEMLILDEADRMLDLGFLPQLTIINK 178
Query: 207 AVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
A R Q LL SAT +D+D L +L NP+ +++ ++ ++ Q+F+ +
Sbjct: 179 AAAHRLRQTLLFSATLEHTDLDALSLALLKNPFRVSVNSGHEIHSDI----SQRFYFADH 234
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
K + LL+ E + K+ +IFT T D A RL F ++ G+ + L+A L Q R +
Sbjct: 235 LTHKEALLAKLLQQESL-KQLIIFTATRDDAGRLAEFCQQAGLPAIGLSARLNQAQRNKV 293
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
+++F +G + L+ TD RG+D V
Sbjct: 294 MQDFASGKYQVLVTTDLAS---------------------------------RGLDLLQV 320
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
VINF++P++ YVHRIGRTGRA G ++SLV P + ++I++F+
Sbjct: 321 SHVINFDLPKHPEEYVHRIGRTGRAGAKGTAISLVGPKDWSALQKIEAFL 370
>gi|334703122|ref|ZP_08518988.1| putative ATP-dependent RNA helicase RhlE [Aeromonas caviae Ae398]
Length = 417
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 141/414 (34%), Positives = 204/414 (49%), Gaps = 57/414 (13%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF EL L RL L G PT +Q ++IPLIL G+D++A A+TG+GKT A++LPLL
Sbjct: 5 SFAELALSPRLQQTLTDLGYAAPTPVQASAIPLILAGRDLMAGAQTGTGKTAAFVLPLLE 64
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
+L + + ALVLVPTREL QV V +G + A+ +
Sbjct: 65 QLLQHPTSDAPRPIRALVLVPTRELAVQVAESV---TRYARGTTLTSTLVYGGVSIAAQV 121
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
A AG DI+IATPG + L G L L+ LV DEAD +L G+ D++KAL
Sbjct: 122 EALNAG-VDILIATPGRLLDHLRQGGLTLA----ELRHLVFDEADRMLDMGFMDEIKALL 176
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQFW 261
IP Q LL SAT ++ L K++L +P ++ EV P+N V+Q
Sbjct: 177 KQIPADRQTLLFSATCDDNLFALCKVLLRDPALV----------EVAPRNTTAAEVEQRV 226
Query: 262 ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 321
+ KL + +L ++ ALIF+ T A +L L K GI + + +L Q++
Sbjct: 227 YAVDGERKLALVEHMLTVK-GWAPALIFSRTRQGADKLAQQLGKGGINALAFHGDLSQSA 285
Query: 322 RLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGID 381
R ++L F AG L+ATD RG+D
Sbjct: 286 RENVLLAFRAGTLQALVATDV---------------------------------AARGLD 312
Query: 382 FKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+++ VIN E P YVHRIGRTGRA N G +++L SP++ + E++++ +
Sbjct: 313 ITDLNHVINLEFPHQPEDYVHRIGRTGRAGNKGLAITLFSPEDAPLLEKVEAVL 366
>gi|302878537|ref|YP_003847101.1| DEAD/DEAH box helicase [Gallionella capsiferriformans ES-2]
gi|302581326|gb|ADL55337.1| DEAD/DEAH box helicase domain protein [Gallionella
capsiferriformans ES-2]
Length = 461
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 141/414 (34%), Positives = 210/414 (50%), Gaps = 54/414 (13%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
+F +L L ++ AL + G KPT IQ +IPL+LEG D++A A+TG+GKT A+ LP+L
Sbjct: 3 NFADLNLAPEILRALIESGYTKPTPIQAQAIPLVLEGSDLMAGAQTGTGKTAAFALPVLQ 62
Query: 87 RL--FNESSPK-SKLAPAALVLVPTRELCQQVYSEVMALIELC--KGQVQLKVVQLTSSM 141
+L F SSP ++ A AL+LVPTREL QV + V A + + V V + +
Sbjct: 63 KLMPFASSSPSPARHAVRALILVPTRELAIQVEASVKAYAKYSHLRSLVVFGGVDIKTQT 122
Query: 142 PASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDD 201
P LRA + +I++ATPG + + +Q + +++LVLDEAD +L G+ D
Sbjct: 123 P--HLRAGI----EILVATPGRLLDHIEQKSVQ----LNQVQMLVLDEADRMLDMGFMPD 172
Query: 202 LKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW 261
LK + A++PR Q L+ SAT S+++ KL L NP ++ + + V Q+ +
Sbjct: 173 LKRILALLPRQRQNLMFSATFSAEIKKLSAEFLVNPKLIEVARSNATSENV----TQKVY 228
Query: 262 ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 321
+ E L L VQ L+FT T A R+ L++ G S ++ + Q
Sbjct: 229 LVGHEEKHALLAHLLRGTGAVQ--TLVFTKTKLTASRIARQLQREGFASDAIHGDKSQLE 286
Query: 322 RLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGID 381
R+ L+ F +G LIATD RG+D
Sbjct: 287 RMQALDAFKSGKITVLIATDVA---------------------------------ARGLD 313
Query: 382 FKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ VIN+E+P A YVHRIGRTGRA G ++SLV+P+E K EI+ +
Sbjct: 314 IDQLPVVINYEIPSAAEDYVHRIGRTGRAGAFGVAISLVAPEEEKYLLEIEKLI 367
>gi|355683299|gb|AER97081.1| DEAD box polypeptide 47 [Mustela putorius furo]
Length = 454
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 130/424 (30%), Positives = 217/424 (51%), Gaps = 53/424 (12%)
Query: 14 QAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTG 73
+A + + EE K+F++LG+ L A ++ G KPT IQ +IPL L+G+D++ A+TG
Sbjct: 11 EAPQPAGQEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETG 70
Query: 74 SGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLK 133
SGKT A+ LP+L+ L +P+ ALVL PTREL Q+ + AL + ++
Sbjct: 71 SGKTGAFALPILNALLE--TPQRLF---ALVLTPTRELAFQISEQFEAL----GSSIGVQ 121
Query: 134 VVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADL 192
+ + + ALA P ++IATPG + L +K F+ +LK LV+DEAD
Sbjct: 122 SAVIVGGIDSMSQSLALAKKPHVIIATPGRLIDHLE----NTKGFNLRALKYLVMDEADR 177
Query: 193 LLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEV 252
+L+ +E ++ + VIPR + L SAT + V KL++ L NP + K +
Sbjct: 178 ILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQT 233
Query: 253 IPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAI 312
+ K +QQ+++ + K Y++ +L EL +IF +T + R L L G +
Sbjct: 234 VEK-LQQYYLFIPSKFKDTYLVYILN-ELAGNSFIIFCSTCNNTQRTALLLRNLGFTAIP 291
Query: 313 LNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDS 372
L+ ++ Q+ RL L +F A L+ATD
Sbjct: 292 LHGQMSQSKRLGSLNKFKAKARSILLATDVAS---------------------------- 323
Query: 373 EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432
RG+D +V V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+
Sbjct: 324 -----RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIE 378
Query: 433 SFVG 436
+G
Sbjct: 379 HLIG 382
>gi|294139294|ref|YP_003555272.1| DEAD/DEAH box helicase [Shewanella violacea DSS12]
gi|293325763|dbj|BAJ00494.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea
DSS12]
Length = 478
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 135/409 (33%), Positives = 203/409 (49%), Gaps = 48/409 (11%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF LGL ++ A+ KG + P+ IQ +IP +LEGKDV+A A+TG+GKT + LPLL
Sbjct: 2 SFTSLGLSAPILKAVASKGYETPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLE 61
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
L + ++K ALVL PTREL QV V E + LK + +
Sbjct: 62 LLSRGNRAQAKKV-RALVLTPTRELAAQVAESV----ETYGKYLPLKSAVIFGGVGIGPQ 116
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
+ L DI++ATPG + + G + +F + L++L+LDEAD +L G+ D+K +
Sbjct: 117 ISKLGKGVDILVATPGRLLDLYNQGAV---NF-NQLEVLILDEADRMLDMGFIHDIKKIL 172
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
V+P Q L+ SAT S D+ KL K +++NP E+ K+V+Q+ +
Sbjct: 173 RVLPAKRQNLMFSATFSDDIRKLAKGLVNNPV-----EISVTPRNATAKSVEQYIYMVDQ 227
Query: 267 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
+ K ++ L+K + K+ L+F+ T A R+ LE + +A ++ Q +R L
Sbjct: 228 KQKTAALIHLIK-QNDWKQVLVFSRTKHGANRIAKNLEANDLTAAAIHGNKSQGARTKAL 286
Query: 327 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 386
F G L+ATD RGID +
Sbjct: 287 ANFKNGAVRVLVATDI---------------------------------AARGIDIDQLP 313
Query: 387 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
V+NF++P YVHRIGRTGRA +G +VSLVS DE K+ +I+ +
Sbjct: 314 NVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSGDESKLLRDIERLI 362
>gi|323494679|ref|ZP_08099782.1| DNA and RNA helicase [Vibrio brasiliensis LMG 20546]
gi|323311112|gb|EGA64273.1| DNA and RNA helicase [Vibrio brasiliensis LMG 20546]
Length = 398
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 137/410 (33%), Positives = 209/410 (50%), Gaps = 50/410 (12%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F +LGL + +++ G KPT IQQ +IP+IL G D++A A+TG+GKT +++LP+L +
Sbjct: 3 FSKLGLSQPITDVISQLGYSKPTTIQQKAIPVILRGDDLIAAAQTGTGKTASFVLPILQK 62
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
L ++ + K AL+L PTREL QV +V + + L + + + + +
Sbjct: 63 L-SQGETQRKKRIRALILAPTRELAVQVEQKV----QDYSKNLPLTSLAMYGGVDEASQK 117
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
AL DI++ATPG + + D +++LVLDEAD +L G+ +D+ +
Sbjct: 118 QALIDGVDILVATPGRLIDMYGKRAVH----FDEVEVLVLDEADRMLDMGFIEDINKILD 173
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 267
+P Q LL SAT S+ V L K +H+PY E+ ++ KN++Q W+ ++
Sbjct: 174 RLPTDIQHLLFSATLSNKVRDLAKTAVHDPY-----EISIAANQASKKNIEQ-WLITVDK 227
Query: 268 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 327
DK +L+ L E +ALIF T A +L LEK GI + ++ Q R +L
Sbjct: 228 DKKSALLSHLINENDWDQALIFIETKHGAAKLASQLEKRGIIAEAFHSGRSQAVRSQLLA 287
Query: 328 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGV-VRGIDFKNVH 386
+F AG Y+IAT GV RGID + +
Sbjct: 288 DFKAGKIKYMIAT----------------------------------GVGARGIDIEGLS 313
Query: 387 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
VIN+++P A YVHRIGRTGRA +G ++S VS D K I+S +G
Sbjct: 314 RVINYDLPFPADEYVHRIGRTGRADASGEAISFVSKDNFKNLCMIESRLG 363
>gi|301765212|ref|XP_002918022.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
[Ailuropoda melanoleuca]
Length = 455
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 131/424 (30%), Positives = 217/424 (51%), Gaps = 53/424 (12%)
Query: 14 QAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTG 73
+A + + EE K+F++LG+ L A ++ G KPT IQ +IPL L+G+D++ A+TG
Sbjct: 12 EAPQPAVQEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETG 71
Query: 74 SGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLK 133
SGKT A+ LP+L+ L +P+ ALVL PTREL Q+ + AL + ++
Sbjct: 72 SGKTGAFALPILNALLE--TPQRLF---ALVLTPTRELAFQISEQFEAL----GSSIGVQ 122
Query: 134 VVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADL 192
+ + + ALA P I+IATPG + L +K F+ +LK LV+DEAD
Sbjct: 123 SAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLE----NTKGFNLRALKYLVMDEADR 178
Query: 193 LLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEV 252
+L+ +E ++ + VIPR + L SAT + V KL++ L NP + K +
Sbjct: 179 ILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQT 234
Query: 253 IPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAI 312
+ K +QQ+++ + K Y++ +L EL +IF +T + R L L G +
Sbjct: 235 VEK-LQQYYLFIPSKFKDTYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIP 292
Query: 313 LNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDS 372
L+ ++ Q+ RL L +F A L+ATD
Sbjct: 293 LHGQMSQSKRLGSLNKFKAKARSILLATDVAS---------------------------- 324
Query: 373 EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432
RG+D +V V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+
Sbjct: 325 -----RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIE 379
Query: 433 SFVG 436
+G
Sbjct: 380 HLIG 383
>gi|167910130|ref|ZP_02497221.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
112]
Length = 400
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 132/416 (31%), Positives = 212/416 (50%), Gaps = 54/416 (12%)
Query: 25 EKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPL 84
+ +F++ GL ++ A+ ++G PT IQ +IP++L G+DV+ A+TG+GKT ++ LP+
Sbjct: 10 DATFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPI 69
Query: 85 LHRLF---NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELC--KGQVQLKVVQLTS 139
+ RL N S+ ++ AL+L PTREL QV + V A + + V V +
Sbjct: 70 IQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNP 129
Query: 140 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE 199
M ++LR + +I+IATPG L V Q + ++ILVLDEAD +L G+
Sbjct: 130 QM--AELRRGV----EILIATPG----RLLDHVQQKTANLGQVQILVLDEADRMLDMGFL 179
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
DL+ + ++P+ Q LL SAT S ++ KL L NP + + + V Q
Sbjct: 180 PDLQRILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEV-----ARSNAAASTVTQ 234
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+E DK ++ L++ + K+ ++F N+ A RL +E+ GI +A ++ + Q
Sbjct: 235 IVYDVAEGDKQAAVVKLIR-DRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQ 293
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
+ R+ L+ F G + L+ATD RG
Sbjct: 294 SERMQALDAFKRGEIEALVATDVA---------------------------------ARG 320
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+D + VINF++P NA YVHRIGRTGRA +G ++SL SP+E K +I+ +
Sbjct: 321 LDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLADIEKLI 376
>gi|407688996|ref|YP_006804169.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii str.
'Balearic Sea AD45']
gi|407292376|gb|AFT96688.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii str.
'Balearic Sea AD45']
Length = 483
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 138/412 (33%), Positives = 205/412 (49%), Gaps = 54/412 (13%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF +LGL L+ A+ K+G P+ IQ+ +IP +L+GKDV+A A+TG+GKT + LP+L
Sbjct: 2 SFTQLGLAEPLLKAIEKRGFSTPSPIQEKAIPEVLQGKDVLAAAQTGTGKTAGFGLPILQ 61
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIEL--CKGQVQLKVVQLTSSMPAS 144
RL E P S AL+L PTREL QV + A E K V V + M
Sbjct: 62 RLM-EGQPVSGNNVRALILTPTRELAAQVEESIRAFSEFLPLKTAVVFGGVGINPQM--M 118
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
LR + D++IATPG + ++ FS L++LVLDEAD +L G+ D+K
Sbjct: 119 KLRKGV----DVLIATPGRLLDLYQQNAVK---FSQ-LEVLVLDEADRMLDMGFIHDIKR 170
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPY-ILTLPEVGDVKDEVIPKNVQQFWIS 263
+ ++P+ Q LL SAT S ++ L K I NP I T P V+ VQQ ++
Sbjct: 171 VLKLLPQERQSLLFSATFSDEITALAKTITRNPVSISTAPANTTVEA------VQQHLVT 224
Query: 264 CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+ K ++ L+K + + + L+F+ T A R+ L + I SA ++ Q +R
Sbjct: 225 IDKSKKTTALICLIKQQKWE-QVLVFSRTKHGANRIAEKLTRSKIPSAAIHGNKSQGART 283
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
L +F G L+ATD RGID
Sbjct: 284 KALTDFKNGAIKVLVATDI---------------------------------AARGIDIS 310
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ V+N ++P AA YVHRIGRTGRA +G + S V +E++ ++I++ +
Sbjct: 311 ELPIVVNLDLPNTAADYVHRIGRTGRAGASGQAWSFVCAEELQNLKDIETLI 362
>gi|302412236|ref|XP_003003951.1| ATP-dependent rRNA helicase RRP3 [Verticillium albo-atrum VaMs.102]
gi|261357856|gb|EEY20284.1| ATP-dependent rRNA helicase RRP3 [Verticillium albo-atrum VaMs.102]
Length = 486
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 145/452 (32%), Positives = 224/452 (49%), Gaps = 66/452 (14%)
Query: 4 SKEIPSKEVK------QAEEEEAEAEEE------KSFEELGLDLRLVHALNKKGIQKPTL 51
SK P+KE + +EA A ++ KSF +LG+ LV A G + PT
Sbjct: 27 SKPAPTKEQSPEPAPPASTTDEAAANQDDAPVAKKSFADLGVVESLVEATEALGYKHPTP 86
Query: 52 IQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTREL 111
IQ+ SIPL L G+DV+ A+TGSGKT A+ LP+L L + S A+V+ PTREL
Sbjct: 87 IQEKSIPLALAGRDVIGLAETGSGKTAAFALPVLQALLEKPS-----GLFAVVMAPTREL 141
Query: 112 CQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTG 171
Q+ AL L + L+ + + AL P +V+ATPG + L
Sbjct: 142 AAQIAQTFEALGSL----INLRCAVIVGGLDMVQQAIALGKKPHVVVATPGRLLDHLE-- 195
Query: 172 VLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLK 230
++K FS SLK LVLDEAD LL + + + IPR L SAT SS V+ L+
Sbjct: 196 --KTKGFSLRSLKYLVLDEADRLLDMDFGPSIDKILKFIPRERHTYLFSATMSSKVESLQ 253
Query: 231 KLILHNPYILTLPEVGDVKDEVIPKNVQQF-WISCSERDKLLYILTLLKLELVQKKALIF 289
+ L +P +++ G +V+ +Q F +I + +D +Y + L+ + + ++F
Sbjct: 254 RASLKDPARVSVQSNG---YQVVSTLLQNFLFIPHALKD--VYCVHLIN-SFIGQTTIVF 307
Query: 290 TNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKD 349
T+ RL + L G + L+ +L Q++RL L +F AG D L+ATD
Sbjct: 308 LRTVHDTQRLAILLRTLGFSALPLHGQLSQSARLGALNKFRAGSRDILVATDVA------ 361
Query: 350 QSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGR 409
RG+D NV VIN+++PQ++ Y+HR+GRT R
Sbjct: 362 ---------------------------ARGLDIPNVDVVINYDLPQDSKTYIHRVGRTAR 394
Query: 410 AYNTGASVSLVSPDEMKIFEEIKSFVGDDENE 441
A +G ++SLV+ +++I+ I++ +G +E
Sbjct: 395 AGKSGRALSLVTQYDLEIWLRIEASMGKKLDE 426
>gi|126175951|ref|YP_001052100.1| DEAD/DEAH box helicase [Shewanella baltica OS155]
gi|152999102|ref|YP_001364783.1| DEAD/DEAH box helicase [Shewanella baltica OS185]
gi|217971789|ref|YP_002356540.1| DEAD/DEAH box helicase [Shewanella baltica OS223]
gi|386342704|ref|YP_006039070.1| DEAD/DEAH box helicase [Shewanella baltica OS117]
gi|125999156|gb|ABN63231.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
gi|151363720|gb|ABS06720.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
gi|217496924|gb|ACK45117.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
gi|334865105|gb|AEH15576.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS117]
Length = 640
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 124/411 (30%), Positives = 208/411 (50%), Gaps = 52/411 (12%)
Query: 22 AEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYL 81
+ +E++F ELGL L+ AL++ G +KPT IQ ASI ++ GKD++ +A+TG+GKT A+
Sbjct: 2 SSDERTFRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFA 61
Query: 82 LPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSM 141
LPLL+++ ++++P+ LVL PTREL QV + + K V+ +
Sbjct: 62 LPLLNKVTSQTTPQ------ILVLAPTRELAVQVAEAFSSYAKFMK---NFHVLPIYGGQ 112
Query: 142 PASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDD 201
AL P +++ TPG + + G L+ DSL+ LVLDEAD +L G+ DD
Sbjct: 113 SMQQQLNALKRGPQVIVGTPGRVMDHMRRGTLK----LDSLQALVLDEADEMLKMGFIDD 168
Query: 202 LKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW 261
++ + P Q L SAT + ++ L NP + + + ++++Q +
Sbjct: 169 IEWILEHTPSERQLALFSATMPEQIKRVANQHLRNPVHVRIE-----SSQTTVESIEQRF 223
Query: 262 ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 321
+ S+ +KL ++ +L++E + +IF T + L LE G S+ L+ ++ Q +
Sbjct: 224 VQVSQHNKLEALVRVLEVENTE-GVIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQA 282
Query: 322 RLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGID 381
R +++ G D LIATD RG+D
Sbjct: 283 RERAVDQLKRGKLDILIATD---------------------------------VAARGLD 309
Query: 382 FKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432
+ + V+N+++P +A YVHRIGRTGRA TG ++ V+ EM++ I+
Sbjct: 310 VERIGHVVNYDIPYDAEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIE 360
>gi|160873699|ref|YP_001553015.1| DEAD/DEAH box helicase [Shewanella baltica OS195]
gi|373951054|ref|ZP_09611015.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
gi|378706943|ref|YP_005271837.1| DEAD/DEAH box helicase [Shewanella baltica OS678]
gi|386323127|ref|YP_006019244.1| DEAD/DEAH box helicase [Shewanella baltica BA175]
gi|418025621|ref|ZP_12664598.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS625]
gi|160859221|gb|ABX47755.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
gi|315265932|gb|ADT92785.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
gi|333817272|gb|AEG09938.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
gi|353534882|gb|EHC04447.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS625]
gi|373887654|gb|EHQ16546.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
Length = 640
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 124/411 (30%), Positives = 208/411 (50%), Gaps = 52/411 (12%)
Query: 22 AEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYL 81
+ +E++F ELGL L+ AL++ G +KPT IQ ASI ++ GKD++ +A+TG+GKT A+
Sbjct: 2 SSDERTFRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFA 61
Query: 82 LPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSM 141
LPLL+++ ++++P+ LVL PTREL QV + + K V+ +
Sbjct: 62 LPLLNKVTSQTTPQ------ILVLAPTRELAVQVAEAFSSYAKFMK---NFHVLPIYGGQ 112
Query: 142 PASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDD 201
AL P +++ TPG + + G L+ DSL+ LVLDEAD +L G+ DD
Sbjct: 113 SMQQQLNALKRGPQVIVGTPGRVMDHMRRGTLK----LDSLQALVLDEADEMLKMGFIDD 168
Query: 202 LKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW 261
++ + P Q L SAT + ++ L NP + + + ++++Q +
Sbjct: 169 IEWILEHTPSERQLALFSATMPEQIKRVANQHLRNPVHVRIE-----SSQTTVESIEQRF 223
Query: 262 ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 321
+ S+ +KL ++ +L++E + +IF T + L LE G S+ L+ ++ Q +
Sbjct: 224 VQVSQHNKLEALVRVLEVENTE-GVIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQA 282
Query: 322 RLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGID 381
R +++ G D LIATD RG+D
Sbjct: 283 RERAVDQLKRGKLDILIATDV---------------------------------AARGLD 309
Query: 382 FKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432
+ + V+N+++P +A YVHRIGRTGRA TG ++ V+ EM++ I+
Sbjct: 310 VERIGHVVNYDIPYDAEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIE 360
>gi|153207356|ref|ZP_01946093.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii 'MSU
Goat Q177']
gi|161830442|ref|YP_001596593.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii RSA
331]
gi|165918485|ref|ZP_02218571.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii Q321]
gi|120576665|gb|EAX33289.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii 'MSU
Goat Q177']
gi|161762309|gb|ABX77951.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii RSA
331]
gi|165917853|gb|EDR36457.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii Q321]
Length = 411
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 133/416 (31%), Positives = 208/416 (50%), Gaps = 58/416 (13%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SFE LGL L+ A+ ++G +PT +Q+ +IP+IL+ +DV+ A+TG+GKT + LPLL
Sbjct: 2 SFEVLGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQ 61
Query: 87 RLFNESSPKSKLAPA---ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPA 143
RLF P + A AL+L PTREL QV+ V A + + + ++
Sbjct: 62 RLFVSRPPLQRSAKPVIRALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQI 121
Query: 144 SDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLK 203
+ LR + DI++ATPG + ++ GVL ++ VLDEAD +L G+ D++
Sbjct: 122 NHLRRGV----DILVATPGRLLDLVNQGVLN----LSRVEFFVLDEADRMLDMGFLPDIR 173
Query: 204 ALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWIS 263
+ ++P Q LL SAT S ++ +L +LH+P ++ EV +N I+
Sbjct: 174 RILKLLPESRQNLLFSATFSKEIKELTDKLLHSPALI----------EVARRNTAAARIT 223
Query: 264 C----SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+R + +L+ + ++ L+FT T A RL LE G+ SA ++ Q
Sbjct: 224 HVVHPVDRQRKRELLSFMIGSKNWRQVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQ 283
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
+R+ L +F G L+ATD RG
Sbjct: 284 AARMRALTQFKQGKIRVLVATDVA---------------------------------ARG 310
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+D + VINFE+P A YVHR+GRTGRA N G ++SLVS DE+++ +I+ +
Sbjct: 311 LDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVSGDEVRLLRDIEKLL 366
>gi|407685080|ref|YP_006800254.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii str.
'English Channel 673']
gi|407246691|gb|AFT75877.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii str.
'English Channel 673']
Length = 483
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 138/412 (33%), Positives = 205/412 (49%), Gaps = 54/412 (13%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF +LGL L+ A+ K+G P+ IQ+ +IP +L+GKDV+A A+TG+GKT + LP+L
Sbjct: 2 SFTQLGLAEPLLKAIEKRGFSTPSPIQEKAIPEVLQGKDVLAAAQTGTGKTAGFGLPILQ 61
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIEL--CKGQVQLKVVQLTSSMPAS 144
RL E P S AL+L PTREL QV + A E K V V + M
Sbjct: 62 RLM-EGQPVSGNNVRALILTPTRELAAQVEESIRAFSEFLPLKTAVVFGGVGINPQM--M 118
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
LR + D++IATPG + ++ FS L++LVLDEAD +L G+ D+K
Sbjct: 119 KLRKGV----DVLIATPGRLLDLYQQNAVK---FSQ-LEVLVLDEADRMLDMGFIHDIKR 170
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPY-ILTLPEVGDVKDEVIPKNVQQFWIS 263
+ ++P+ Q LL SAT S ++ L K I NP I T P V+ VQQ ++
Sbjct: 171 VLKLLPQERQSLLFSATFSDEITALAKTITRNPVSISTAPANTTVEA------VQQHLVT 224
Query: 264 CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+ K ++ L+K + + + L+F+ T A R+ L + I SA ++ Q +R
Sbjct: 225 IDKSKKTTALICLIKQQKWE-QVLVFSRTKHGANRIAEKLTRSKIPSAAIHGNKSQGART 283
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
L +F G L+ATD RGID
Sbjct: 284 KALADFKNGAIKVLVATDI---------------------------------AARGIDIS 310
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ V+N ++P AA YVHRIGRTGRA +G + S V +E++ ++I++ +
Sbjct: 311 ELPIVVNLDLPNTAADYVHRIGRTGRAGASGQAWSFVCAEELQNLKDIETLI 362
>gi|351711397|gb|EHB14316.1| Putative ATP-dependent RNA helicase DDX47 [Heterocephalus glaber]
Length = 454
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 132/423 (31%), Positives = 218/423 (51%), Gaps = 54/423 (12%)
Query: 16 EEEEAEAEEE-KSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGS 74
EE + EEE K+F++LG+ L A ++ G KPT IQ +IP+ L+G+D++ A+TGS
Sbjct: 12 EEPQPTVEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPMALQGRDIIGLAETGS 71
Query: 75 GKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKV 134
GKT A+ LP+L+ L + +P+ ALVL PTREL Q+ + AL + ++
Sbjct: 72 GKTGAFALPILNALLD--TPQRLF---ALVLTPTRELAFQISEQFEAL----GSSIGVQC 122
Query: 135 VQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLL 193
+ + + ALA P +VIATPG + L +K F+ +LK LV+DEAD +
Sbjct: 123 AVIVGGIDSMSQSLALAKKPHVVIATPGRLIDHLE----NTKGFNLRALKYLVMDEADRI 178
Query: 194 LSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVI 253
L+ +E ++ + VIPR + L SAT + V KL++ L NP + K + +
Sbjct: 179 LNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTV 234
Query: 254 PKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAIL 313
K +QQ+++ + K Y++ +L EL +IF +T + R L L G + L
Sbjct: 235 EK-LQQYYLFIPSKFKDTYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPL 292
Query: 314 NAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSE 373
+ ++ Q+ RL L +F A L+ATD
Sbjct: 293 HGQMSQSKRLGSLNKFKAKARSILLATDVAS----------------------------- 323
Query: 374 FGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKS 433
RG+D +V V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+
Sbjct: 324 ----RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEH 379
Query: 434 FVG 436
+G
Sbjct: 380 LIG 382
>gi|167844897|ref|ZP_02470405.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
B7210]
Length = 399
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 132/416 (31%), Positives = 212/416 (50%), Gaps = 54/416 (12%)
Query: 25 EKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPL 84
+ +F++ GL ++ A+ ++G PT IQ +IP++L G+DV+ A+TG+GKT ++ LP+
Sbjct: 10 DATFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPI 69
Query: 85 LHRLF---NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELC--KGQVQLKVVQLTS 139
+ RL N S+ ++ AL+L PTREL QV + V A + + V V +
Sbjct: 70 IQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNP 129
Query: 140 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE 199
M ++LR + +I+IATPG L V Q + ++ILVLDEAD +L G+
Sbjct: 130 QM--AELRRGV----EILIATPG----RLLDHVQQKTANLGQVQILVLDEADRMLDMGFL 179
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
DL+ + ++P+ Q LL SAT S ++ KL L NP + + + V Q
Sbjct: 180 PDLQRILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEV-----ARSNAAASTVTQ 234
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+E DK ++ L++ + K+ ++F N+ A RL +E+ GI +A ++ + Q
Sbjct: 235 IVYDVAEGDKQAAVVKLIR-DRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQ 293
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
+ R+ L+ F G + L+ATD RG
Sbjct: 294 SERMQALDAFKRGEIEALVATDVA---------------------------------ARG 320
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+D + VINF++P NA YVHRIGRTGRA +G ++SL SP+E K +I+ +
Sbjct: 321 LDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLADIEKLI 376
>gi|302917131|ref|XP_003052376.1| hypothetical protein NECHADRAFT_1180 [Nectria haematococca mpVI
77-13-4]
gi|256733315|gb|EEU46663.1| hypothetical protein NECHADRAFT_1180 [Nectria haematococca mpVI
77-13-4]
Length = 768
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 131/400 (32%), Positives = 200/400 (50%), Gaps = 50/400 (12%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF+ + L ++ L G KPT IQ SIP+ L GKD+V A TGSGKT A+++P+L
Sbjct: 256 SFQAMSLSRPILRGLASVGFTKPTPIQSKSIPIALMGKDLVGGAVTGSGKTGAFIVPILE 315
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
RL PK +VL PTREL Q ++ L + L V L+ + ++L
Sbjct: 316 RLL--YRPKKIPTTRVVVLTPTRELAIQCHAVATKLAAYTDIKFTLAVGGLSLKVQEAEL 373
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKAL 205
R PD++IATPG + S SF+ D+++IL+LDEAD +L G+ D+L +
Sbjct: 374 RLR----PDVIIATPGRFIDHMRN----SASFNVDTVEILILDEADRMLEDGFADELNEI 425
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-WISC 264
+P+ Q +L SAT +S VD+L ++ ++ P + + D + + + VQ+F +
Sbjct: 426 LTTLPKSRQTMLFSATMTSTVDRLIRVGMNKPARVMV----DSQKKTVGTLVQEFVRLRP 481
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
+K + L + L +++ +IF A R ++ G+ A L+ + Q R+
Sbjct: 482 GREEKRMGYLAYICKTLYRERVIIFFRQKKEAHRARIIFGLLGLSCAELHGSMNQTQRIS 541
Query: 325 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 384
+EEF G YL+ATD L S RG+D K
Sbjct: 542 SVEEFRDGKVSYLLATD----------------------------LAS-----RGLDIKG 568
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS-PD 423
V TVIN+E PQ+ YVHR+GRT RA G +++L + PD
Sbjct: 569 VDTVINYEAPQSLEIYVHRVGRTARAGRKGTAITLAAEPD 608
>gi|336312904|ref|ZP_08567849.1| cold-shock DEAD-box protein A [Shewanella sp. HN-41]
gi|335863516|gb|EGM68660.1| cold-shock DEAD-box protein A [Shewanella sp. HN-41]
Length = 631
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 125/411 (30%), Positives = 208/411 (50%), Gaps = 52/411 (12%)
Query: 22 AEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYL 81
+ +E++F ELGL L+ AL++ G +KPT IQ ASI ++ GKD++ +A+TG+GKT A+
Sbjct: 2 SSDERTFRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFA 61
Query: 82 LPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSM 141
LPLL+++ ++++P+ LVL PTREL QV + + K V+ +
Sbjct: 62 LPLLNKVTSQTTPQ------ILVLAPTRELAVQVAEAFSSYAKFMK---NFHVLPIYGGQ 112
Query: 142 PASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDD 201
AL P +++ TPG + + G L+ DSLK LVLDEAD +L G+ DD
Sbjct: 113 SMQQQLNALKRGPQVIVGTPGRVMDHMRRGTLK----LDSLKALVLDEADEMLKMGFIDD 168
Query: 202 LKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW 261
++ + P Q L SAT + ++ L +P + + + ++++Q +
Sbjct: 169 IEWILEHTPSERQLALFSATMPEQIKRVANQHLRSPVHVRIE-----SSQTTVESIEQRF 223
Query: 262 ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 321
+ S+ +KL ++ +L++E + +IF T + L LE G S+ L+ ++ Q +
Sbjct: 224 VQVSQHNKLEALVRVLEVENTE-GIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQA 282
Query: 322 RLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGID 381
R +E+ G D LIATD RG+D
Sbjct: 283 RERAVEQLKRGKLDILIATDV---------------------------------AARGLD 309
Query: 382 FKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432
+ + V+N+++P +A YVHRIGRTGRA TG ++ V+ EM++ I+
Sbjct: 310 VERIGHVVNYDIPYDAEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIE 360
>gi|311280327|ref|YP_003942558.1| DEAD/DEAH box helicase [Enterobacter cloacae SCF1]
gi|308749522|gb|ADO49274.1| DEAD/DEAH box helicase domain protein [Enterobacter cloacae SCF1]
Length = 446
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 138/416 (33%), Positives = 208/416 (50%), Gaps = 60/416 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF+ LGL+ ++ A+ ++G ++PT IQ+ +IP +LEG+D++A A+TG+GKT + LPLL
Sbjct: 2 SFDTLGLNPEILRAVAEQGYREPTPIQKQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 87 RLF-NESSPKSKLAPAALVLVPTRELCQQV------YSEVMALIELCKGQVQLKVVQLTS 139
RL NE K + AL+L PTREL QV YS+ + + L V V +
Sbjct: 62 RLVQNEPHAKGRRPIRALILTPTRELAAQVGENVREYSKYLNIRSL----VVFGGVSINP 117
Query: 140 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE 199
M L G DI++ATPG + L+ DS+++LVLDEAD +L G+
Sbjct: 118 QM------MKLRGGVDILVATPGRLLDLEHQNALK----LDSVEVLVLDEADRMLDMGFI 167
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
D++ + A +P Q LL SAT S D+ L + +L NP + + ++V Q
Sbjct: 168 HDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQV----TQH 223
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+R + L L+ + E ++ L+FT T A L L K GI+SA ++ Q
Sbjct: 224 VHFVDKKRKREL--LSQMIGEGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQ 281
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
+R L +F +G L+ATD RG
Sbjct: 282 GARTRALADFKSGDIRVLVATDIA---------------------------------ARG 308
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+D + + V+N+E+P YVHRIGRTGRA TG ++SLV DE K+ +I+ +
Sbjct: 309 LDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLL 364
>gi|260777929|ref|ZP_05886822.1| ATP-dependent RNA helicase [Vibrio coralliilyticus ATCC BAA-450]
gi|260605942|gb|EEX32227.1| ATP-dependent RNA helicase [Vibrio coralliilyticus ATCC BAA-450]
Length = 398
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 138/416 (33%), Positives = 208/416 (50%), Gaps = 62/416 (14%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F +LGL + A+ + G KPT IQ +IP++L G+D++A A+TG+GKT +++LP+L +
Sbjct: 3 FSKLGLSQPITDAIQQLGYDKPTTIQTKAIPVVLRGEDLIAAAQTGTGKTASFVLPMLEK 62
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQV------YSEVMALIELCKGQVQLKVVQLTSSM 141
L ++ + K L+L PTREL QV Y + +AL L + +
Sbjct: 63 L-SQGETQRKKRIRGLILTPTRELAVQVEEKIRDYGQHLALTSLA----------MYGGV 111
Query: 142 PASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDD 201
+ AL DI++ATPG + + + +++LVLDEAD +L G+ DD
Sbjct: 112 DEQAQKQALIEGVDILVATPGRLIDMYGKRAVH----FEEVEMLVLDEADRMLDMGFIDD 167
Query: 202 LKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW 261
+ + +P Q LL SAT S+ V L K +H+PY E+ ++ KN++Q W
Sbjct: 168 INKILDRLPTDIQHLLFSATLSNKVRDLAKTAVHDPY-----EISIAANQASKKNIEQ-W 221
Query: 262 ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 321
+ ++DK +L+ L E +ALIF T A +L LEK GI++ ++ Q
Sbjct: 222 LITVDKDKKSALLSHLIKENDWDQALIFIETKHGAAKLAQQLEKRGIEAEAFHSGRSQAV 281
Query: 322 RLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGV-VRGI 380
R +LE+F AG Y+IAT GV RGI
Sbjct: 282 RSKLLEDFKAGKIQYMIAT----------------------------------GVGARGI 307
Query: 381 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
D + + VIN+++P A YVHRIGRTGRA G ++S VS D K I+S +G
Sbjct: 308 DIEGLTRVINYDLPFPADEYVHRIGRTGRADAQGEAISFVSKDNFKNLCMIESRLG 363
>gi|302508139|ref|XP_003016030.1| hypothetical protein ARB_05427 [Arthroderma benhamiae CBS 112371]
gi|291179599|gb|EFE35385.1| hypothetical protein ARB_05427 [Arthroderma benhamiae CBS 112371]
Length = 474
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 134/425 (31%), Positives = 215/425 (50%), Gaps = 52/425 (12%)
Query: 13 KQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKT 72
+++ E A+ + K+F++LG+ L A G + PT IQ SIPL L+G+D+V A+T
Sbjct: 36 EESGEGPADTKAPKTFKDLGIIDSLCDACTSLGYKTPTPIQAESIPLALQGRDLVGLAET 95
Query: 73 GSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQL 132
GSGKT A+ LP+L L + P LVL PTREL Q+ AL L + +
Sbjct: 96 GSGKTAAFALPILQALMEKPQPY-----FGLVLAPTRELAVQITEAFEALGSL----ISV 146
Query: 133 KVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEAD 191
+ + M +L P I++ATPG + L +K FS +LK LV+DEAD
Sbjct: 147 RCAVIVGGMDMISQSISLGKKPHIIVATPGRLLDHLE----NTKGFSLRNLKYLVMDEAD 202
Query: 192 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 251
LL + L + V+PR + L SAT SS V+ L++ L NP ++ + K +
Sbjct: 203 RLLDLDFGPVLDKILKVLPRERRTYLFSATLSSKVESLQRASLSNPLRVS---ISSNKYQ 259
Query: 252 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 311
+ + Q +I + K +Y++ +L E + +IFT T++ RL + L G +
Sbjct: 260 TV-STLLQSYIFIPHKYKDIYLVHILN-EFPGQTTIIFTRTVNETQRLSILLRALGFGAI 317
Query: 312 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLD 371
L+ +L Q++RL L +F +G D L+ATD
Sbjct: 318 PLHGQLSQSARLGALGKFRSGSRDILVATDV----------------------------- 348
Query: 372 SEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 431
RG+D V V+NF++P ++ Y+HR+GRT RA +G ++S+V+ E++I++ I
Sbjct: 349 ----AARGLDIPAVDLVLNFDLPSDSKTYIHRVGRTARAGKSGRAISVVTQYEVEIWQRI 404
Query: 432 KSFVG 436
++ +G
Sbjct: 405 EAALG 409
>gi|156502690|ref|YP_001428756.1| DEAD/DEAH box helicase [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|290953085|ref|ZP_06557706.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
holarctica URFT1]
gi|423050934|ref|YP_007009368.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
holarctica F92]
gi|156253293|gb|ABU61799.1| DEAD/DEAH box helicase family protein [Francisella tularensis
subsp. holarctica FTNF002-00]
gi|421951656|gb|AFX70905.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
holarctica F92]
Length = 441
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 127/410 (30%), Positives = 210/410 (51%), Gaps = 50/410 (12%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F +LGL+ + +AL KKG KPT IQ +IP++L+G DV+A A+TG+GKT + LP++ R
Sbjct: 3 FSDLGLNSLICNALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQR 62
Query: 88 LFNESSPKSKLAPA-ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
L ++ PK++ L+L PTREL Q+ + I++ ++ + + +
Sbjct: 63 LLDQ--PKAQANRIKTLILTPTRELAAQIQEQ----IQIYAANTHIRSAVIFGGVSNNPQ 116
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
L +I+IATPG + S ++ DSL VLDEAD +L G+ +DLK +
Sbjct: 117 MMKLRKGVEILIATPGRLLDLYSQNAVK----FDSLNTFVLDEADRMLDMGFINDLKKIH 172
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
++P+ Q L+ SAT SS++ L L+NP ++ DV + + K Q+ + + +
Sbjct: 173 NLLPKKLQTLMFSATFSSEIKNLANEFLNNPQFVS----ADVVNTTVKKITQKIY-TLDK 227
Query: 267 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
+K+ +++L+K + + + L+F+ T + A ++ L GI S+ ++ Q +R L
Sbjct: 228 SNKINALISLIKDQNLH-QVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKAL 286
Query: 327 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 386
+F + + L+ATD RGID +
Sbjct: 287 ADFKSNDINVLVATDIA---------------------------------ARGIDIAQLP 313
Query: 387 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
VIN ++ A YVHRIGRTGRA G ++SLVS DE++ I+ +G
Sbjct: 314 CVINLDLSNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSNIEHLIG 363
>gi|109095724|ref|XP_001086352.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 3
[Macaca mulatta]
Length = 455
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 137/454 (30%), Positives = 228/454 (50%), Gaps = 61/454 (13%)
Query: 14 QAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTG 73
+A + E EE K+F++LG+ L A ++ G KPT I +IPL L+G+D++ A+TG
Sbjct: 12 EASQPVMEEEETKTFKDLGVTDVLCEACDQLGWTKPTKILIEAIPLALQGRDIIGLAETG 71
Query: 74 SGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLK 133
SGKT A+ LP+L+ L +P+ ALVL PTREL Q+ + AL + ++
Sbjct: 72 SGKTGAFALPILNALLE--TPQRLF---ALVLTPTRELAFQISEQFEAL----GSSIGVQ 122
Query: 134 VVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADL 192
+ + + ALA P I+IATPG + L +K F+ +LK LV+DEAD
Sbjct: 123 SAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLE----NTKGFNLRALKYLVMDEADR 178
Query: 193 LLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEV 252
+L+ +E ++ + VIPR + L SAT + V KL++ L NP + K +
Sbjct: 179 ILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQT 234
Query: 253 IPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAI 312
+ K +QQ++I + K Y++ +L EL +IF +T + R L L G +
Sbjct: 235 VEK-LQQYYIFIPSKFKDTYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIP 292
Query: 313 LNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDS 372
L+ ++ Q+ RL L +F A L+ATD
Sbjct: 293 LHGQMSQSKRLGSLNKFKAKARSILLATDVAS---------------------------- 324
Query: 373 EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432
RG+D +V V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+
Sbjct: 325 -----RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIE 379
Query: 433 SFVGDD----ENEDSNIIAPFPLLAQNAVESLRY 462
+G +D ++ +LA+ E+ R+
Sbjct: 380 HLIGKKLPVFPTQDDEVM----MLAERVAEAQRF 409
>gi|381150962|ref|ZP_09862831.1| DNA/RNA helicase, superfamily II [Methylomicrobium album BG8]
gi|380882934|gb|EIC28811.1| DNA/RNA helicase, superfamily II [Methylomicrobium album BG8]
Length = 425
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 145/419 (34%), Positives = 204/419 (48%), Gaps = 64/419 (15%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF +LGL L+ A+ ++G PT IQQ +IPLIL+G+DV+A A+TG+GKT ++ LPLL
Sbjct: 2 SFAQLGLAAPLLKAVAEQGYVTPTPIQQQTIPLILDGRDVLAGAQTGTGKTASFTLPLLQ 61
Query: 87 RLFNESS-PKSKLAPAALVLVPTRELCQQVYSEVMA-------LIELCKGQVQLKVVQLT 138
RL + P+ AL+L PTREL QV+ V A E+ G V +
Sbjct: 62 RLAESNDKPQKPRKIRALILAPTRELAAQVHDSVRAYGKHLPLFAEVVVGGVSIN----- 116
Query: 139 SSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGY 198
+R+ G DIV+ATPG + L LQ L+ILVLDEAD +L G+
Sbjct: 117 -----GQIRSLQRG-CDIVVATPGRLLDHL----LQKNIELSHLEILVLDEADRMLDMGF 166
Query: 199 EDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ 258
D++ + +PR Q LL SAT ++ L K +LH P EV N++
Sbjct: 167 LPDIRKIIGHLPRQKQSLLFSATFPEEIRGLAKQLLHEPA-----EVSVAPHNTTADNIK 221
Query: 259 QFWISCS-ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAEL 317
+ + ER + L L+ L K+ L+F T A RL+ L K GI++A L+ +
Sbjct: 222 ELCYGIAKERKRGL--LSYLIGSNNWKQVLVFVRTKHGADRLEKQLVKDGIRTAALHGDK 279
Query: 318 PQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVV 377
Q +R L+ F G L+ATD
Sbjct: 280 SQGARTRALDYFKTGQVAALVATDIA---------------------------------A 306
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
RG+D + VINF++PQ Y+HRIGRTGRA G +VSLV P+E +I+ +G
Sbjct: 307 RGLDIDELPHVINFDLPQVPEDYIHRIGRTGRAGANGEAVSLVCPEEAYQLAQIEKLLG 365
>gi|254367888|ref|ZP_04983908.1| ATP-dependent RNA helicase rhlE [Francisella tularensis subsp.
holarctica 257]
gi|134253698|gb|EBA52792.1| ATP-dependent RNA helicase rhlE [Francisella tularensis subsp.
holarctica 257]
Length = 441
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 127/410 (30%), Positives = 210/410 (51%), Gaps = 50/410 (12%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F +LGL+ + +AL KKG KPT IQ +IP++L+G DV+A A+TG+GKT + LP++ R
Sbjct: 3 FSDLGLNSLICNALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQR 62
Query: 88 LFNESSPKSKLAPA-ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
L ++ PK++ L+L PTREL Q+ + I++ ++ + + +
Sbjct: 63 LLDQ--PKAQANRIKTLILTPTRELAAQIQEQ----IQIYAANTHIRSAVIFGGVSINPQ 116
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
L +I+IATPG + S ++ DSL VLDEAD +L G+ +DLK +
Sbjct: 117 MMKLRKGVEILIATPGRLLDLYSQNAVK----FDSLNTFVLDEADRMLDMGFINDLKKIH 172
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
++P+ Q L+ SAT SS++ L L+NP ++ DV + + K Q+ + + +
Sbjct: 173 NLLPKKLQTLMFSATFSSEIKNLANEFLNNPQFVS----ADVVNTTVKKITQKIY-TLDK 227
Query: 267 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
+K+ +++L+K + + + L+F+ T + A ++ L GI S+ ++ Q +R L
Sbjct: 228 SNKINALISLIKDQNLH-QVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKAL 286
Query: 327 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 386
+F + + L+ATD RGID +
Sbjct: 287 ADFKSNDINVLVATDIA---------------------------------ARGIDIAQLP 313
Query: 387 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
VIN ++ A YVHRIGRTGRA G ++SLVS DE++ I+ +G
Sbjct: 314 CVINLDLSNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSNIEHLIG 363
>gi|24374643|ref|NP_718686.1| ATP-dependent RNA helicase DEAD box family [Shewanella oneidensis
MR-1]
gi|24349273|gb|AAN56130.1| ATP-dependent RNA helicase DEAD box family [Shewanella oneidensis
MR-1]
Length = 427
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 139/409 (33%), Positives = 201/409 (49%), Gaps = 52/409 (12%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF ELG+ L + L + G PT +Q A+IP +L G+DV+A A TGSGKT A+ LPLL
Sbjct: 10 SFAELGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQ 69
Query: 87 RLFN-ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASD 145
RL +S+ KS LVLVPTREL QQV ++ G QLK+V + +
Sbjct: 70 RLSEAKSADKSAGVVRCLVLVPTRELAQQVADSFLSYASHFNG--QLKIVAAFGGVSVNL 127
Query: 146 LRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL 205
+L D+++ATPG + L++ L+ S VLDEAD +LS G+ ++L+ +
Sbjct: 128 QMQSLRAGADVLVATPGRLLDLLASNALKLTQVSA----FVLDEADRMLSLGFTEELEQV 183
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNP--YILTLPEVGDVKDEVIPKNVQQFWIS 263
A +PR Q LL SAT +V L +LH P Y L + ++ VI N
Sbjct: 184 LAALPRQKQTLLFSATFPEEVRALTTKLLHQPLEYHLQSEQESTIEQRVITVN------- 236
Query: 264 CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
R++ +L L + +ALIF + + L L K GI + + + + Q +R
Sbjct: 237 ---REQKTALLAHLIKQHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGART 293
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
+L+ F G LIATD RGID
Sbjct: 294 RVLDGFKNGEISVLIATDIA---------------------------------ARGIDID 320
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432
+ VINF++P++ A Y+HRIGR+GRA G +V+L+S +E F I+
Sbjct: 321 KLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEEYHHFGVIE 369
>gi|452986589|gb|EME86345.1| hypothetical protein MYCFIDRAFT_202484 [Pseudocercospora fijiensis
CIRAD86]
Length = 756
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 150/511 (29%), Positives = 248/511 (48%), Gaps = 74/511 (14%)
Query: 15 AEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGS 74
AEE ++ +F + L +++ L G KPT IQ +IP+ LEGKD+V A TGS
Sbjct: 223 AEETKSAKATATAFHSMNLSRQILKGLAAVGFDKPTPIQAKTIPVALEGKDLVGGAVTGS 282
Query: 75 GKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKV 134
GKT A+L+P+L RL P++ +L+PTREL Q ++ L +
Sbjct: 283 GKTAAFLIPILERLLYR--PRNAATTRVAILMPTRELALQCFNVAKKLA----AHTDITF 336
Query: 135 VQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLL 193
Q + + + L PDIVIATPG S SF+ ++++ILVLDEAD +
Sbjct: 337 GQAIGGLNSREQEKQLKLRPDIVIATPGRFIDLERN----SASFAVNTIEILVLDEADRM 392
Query: 194 LSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVI 253
L G+ D+L + IP+ Q +L SAT +S VD L ++ + P L + D + +
Sbjct: 393 LEEGFADELNEILTKIPKSRQTMLFSATMTSKVDDLIRVGMQRPVRLMV----DAQKATV 448
Query: 254 PKNVQQF--WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 311
VQ+F E +L Y++ L + ++ + +IF A R+++ G+K+A
Sbjct: 449 SGLVQEFVRLRQGREGKRLAYLMVLCE-QIYTDRVIIFFRQKKEAHRVRVIFALAGMKAA 507
Query: 312 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLD 371
L+ + Q R++ +E F G +L+ATD L
Sbjct: 508 ELHGNMTQEQRINAIETFRTGKASFLLATD----------------------------LA 539
Query: 372 SEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 431
S RGID K + TVIN+E PQ+ Y+HR+GRT RA +G + +L + + K+ +
Sbjct: 540 S-----RGIDIKGIETVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKV---V 591
Query: 432 KSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNS 491
K+ V + A ++ Q +VE A DV T++ ++ A+D+ + +L
Sbjct: 592 KAAVKAGK-------AQGAVIKQRSVE-----ASDVDAWQTRL---DAMAEDIED-VLRE 635
Query: 492 EKLKAHFEVNPKDL----DLLKHDKDLSKKP 518
EK + + +DL +++K++ ++ +P
Sbjct: 636 EKEERALQAVDRDLTKADNIVKYEDEIKARP 666
>gi|92112945|ref|YP_572873.1| DEAD/DEAH box helicase [Chromohalobacter salexigens DSM 3043]
gi|91796035|gb|ABE58174.1| DEAD/DEAH box helicase-like protein [Chromohalobacter salexigens
DSM 3043]
Length = 452
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 136/414 (32%), Positives = 209/414 (50%), Gaps = 58/414 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF LGL ++ A+ ++G + P+ IQ +IP +LEG+DV+A A+TG+GKT + LP+L
Sbjct: 2 SFTSLGLSAPILDAVAEQGYETPSPIQAKAIPAVLEGRDVMAAAQTGTGKTAGFTLPILE 61
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
RL + K AL+L PTREL Q+ + IE + L+ + + +
Sbjct: 62 RLAAGTRAPGKQV-RALILTPTRELAAQIGAN----IEAYGKHLPLRSAVVFGGVKINPQ 116
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
A L G DI++ATPG + L ++ +F D+L +LVLDEAD +L G+ D++ +
Sbjct: 117 IAKLRGGVDILVATPG---RLLDLHGQKAVNF-DALDVLVLDEADRMLDMGFIHDIRRIL 172
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQFW 261
+P Q LL SAT S ++ +L K ++++P V+ V P+N V Q W
Sbjct: 173 KTLPSKRQNLLFSATFSQEIRQLAKGLVNDP----------VEISVTPRNTTAETVTQ-W 221
Query: 262 ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 321
I ++ + +LT L E ++ L+F T A RL LE+ GI++A ++ QN+
Sbjct: 222 IHPVDKARKPALLTHLIHEHQWQQVLVFMRTKHGANRLSRHLEEAGIEAAAIHGNKSQNA 281
Query: 322 RLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGID 381
R L+ F +G L+ATD RG+D
Sbjct: 282 RTKALDGFKSGEIRVLVATDI---------------------------------AARGLD 308
Query: 382 FKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ V+NFE+P A YVHRIGRTGRA +G ++SLV +E K I+ +
Sbjct: 309 INQLPQVVNFELPNVAEDYVHRIGRTGRAGASGHAISLVCAEEGKELAGIERLI 362
>gi|237845351|ref|XP_002371973.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
gi|61676032|gb|AAX51681.1| DEAD box RNA helicase [Toxoplasma gondii]
gi|211969637|gb|EEB04833.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
Length = 479
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 148/470 (31%), Positives = 236/470 (50%), Gaps = 62/470 (13%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
+F LGL L +++ G + PT IQ +P L+G+D++A A+TGSGKT A+ LP+L
Sbjct: 52 TFASLGLCSELCASVSTLGWKSPTAIQSEVLPYALQGRDIIALAETGSGKTAAFGLPILQ 111
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
RL + AL+L PTRELC Q+ +++A+ G + + VV L + +
Sbjct: 112 RLLQRTQRFY-----ALILAPTRELCLQISQQILAM----GGTLGVTVVTLVGGLDHNTQ 162
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKAL 205
ALA P +V+ +PG + L Q+K FS S+K+LVLDEAD LLS ++ L+ L
Sbjct: 163 AIALAKKPHVVVGSPGRVVDHLQ----QTKGFSLKSVKVLVLDEADRLLSLDFDAALQVL 218
Query: 206 SAVI--PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWIS 263
+ P Q +L SAT ++ V KL+K L P L EV D + ++QQ ++
Sbjct: 219 LEHVGSPAERQTMLFSATMTTKVSKLQKASLKKPVKL---EVNSKYD--VASHLQQHFLL 273
Query: 264 CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+ K ++ L L L ++FTNT A + LFL G +S L+ ++ Q R+
Sbjct: 274 VPFKLKHTHLAAAL-LHLSPSSVIVFTNTCANARKTALFLRHLGFQSVCLHGKMTQPQRI 332
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
L +F A L+AT+ V S RG+D
Sbjct: 333 GALTKFRAAETSCLVATE---------------VGS------------------RGLDIP 359
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDS 443
+V VINF++P ++ Y+HR+GRT RA TG ++++V+ +++ ++ I+ +G E +
Sbjct: 360 HVQMVINFDVPLSSKEYIHRVGRTARAGRTGRALTIVTQYDVEAYQRIEHALGQKLEELT 419
Query: 444 NIIAPFPL--LAQNAVESLR-----YRAEDVAKSVTKIAVRESRAQDLRN 486
+ A + L + +E+LR R D A V K A ++ A + R+
Sbjct: 420 ELTATEKVMPLHEKVLEALRSAELEAREADEAALVQKAAKKKRGAGNKRS 469
>gi|444375654|ref|ZP_21174907.1| ATP-dependent RNA helicase RhlE [Enterovibrio sp. AK16]
gi|443680157|gb|ELT86804.1| ATP-dependent RNA helicase RhlE [Enterovibrio sp. AK16]
Length = 508
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 136/403 (33%), Positives = 201/403 (49%), Gaps = 58/403 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
F +LGL ++ A+ +KG P+ IQ +IP +LEGKDV+A A+TG+GKT ++LP+L
Sbjct: 2 GFTDLGLSAPILRAIQEKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFVLPILE 61
Query: 87 RLFNESSPKSKLAPA---ALVLVPTRELCQQVYSEVMALIE--LCKGQVQLKVVQLTSSM 141
RL S S+ P AL+L PTREL Q++ + + V V++ M
Sbjct: 62 RL----SEGSRTRPNHIRALILTPTRELAAQIHENAVVYSRHLRLRSSVVFGGVKINPQM 117
Query: 142 PASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDD 201
+LR DI++ATPG + ++ FS L++LVLDEAD +L G+ D
Sbjct: 118 --MNLRKGT----DILVATPGRLLDLYQQNAVK---FS-QLEVLVLDEADRMLDMGFFRD 167
Query: 202 LKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW 261
+K + ++P+ Q LL SAT S ++ L K +++NP E+ + V+Q W
Sbjct: 168 IKKILDLLPKNRQNLLFSATFSDEIRDLAKGLVNNPV-----EISVTPANSTARTVEQ-W 221
Query: 262 ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 321
I +++ K +L L + K+ L+FT T A +L FL GI +A ++ Q++
Sbjct: 222 IYPADKKKKPAMLAKLIKDGDWKQVLVFTRTKHGANKLSHFLNDEGITAAPIHGNKSQSA 281
Query: 322 RLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGID 381
R L +F +G L+ATD RGID
Sbjct: 282 RTKALADFKSGDVRVLVATDI---------------------------------AARGID 308
Query: 382 FKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE 424
+ V+NFE+P A YVHRIGRTGRA G +VSLV DE
Sbjct: 309 IPQLPQVVNFEIPHVAEDYVHRIGRTGRAGEPGKAVSLVCADE 351
>gi|62897439|dbj|BAD96660.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1 variant [Homo
sapiens]
Length = 448
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 132/424 (31%), Positives = 216/424 (50%), Gaps = 53/424 (12%)
Query: 14 QAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTG 73
+A + E EE K+F++LG+ L A ++ G KPT IQ +IPL L+G+D++ A+TG
Sbjct: 5 EASQPIVEEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETG 64
Query: 74 SGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLK 133
SGKT A+ LP+L+ L +P+ ALVL PTREL Q+ + AL + ++
Sbjct: 65 SGKTGAFALPILNALLE--TPQRLF---ALVLTPTRELAFQISEQFEAL----GSSIGVQ 115
Query: 134 VVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADL 192
+ + + ALA P I+IATPG + L +K F+ +LK LV+DEAD
Sbjct: 116 SAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLE----NTKGFNLRALKYLVMDEADR 171
Query: 193 LLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEV 252
+L+ +E ++ + V PR + L SAT + V KL++ L NP + K +
Sbjct: 172 ILNMDFETEVDKILKVNPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQT 227
Query: 253 IPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAI 312
+ K +QQ++I + K Y++ +L EL +IF +T + R L L G +
Sbjct: 228 VEK-LQQYYIFIPSKFKDTYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIP 285
Query: 313 LNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDS 372
L+ ++ Q+ RL L +F A L+ATD
Sbjct: 286 LHGQMSQSKRLGSLNKFKAKARSILLATDVAS---------------------------- 317
Query: 373 EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432
RG+D +V V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+
Sbjct: 318 -----RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIE 372
Query: 433 SFVG 436
+G
Sbjct: 373 HLIG 376
>gi|89256570|ref|YP_513932.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
holarctica LVS]
gi|115315000|ref|YP_763723.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
holarctica OSU18]
gi|422938927|ref|YP_007012074.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
holarctica FSC200]
gi|89144401|emb|CAJ79691.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
holarctica LVS]
gi|115129899|gb|ABI83086.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
holarctica OSU18]
gi|407294078|gb|AFT92984.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
holarctica FSC200]
Length = 441
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 127/410 (30%), Positives = 210/410 (51%), Gaps = 50/410 (12%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F +LGL+ + +AL KKG KPT IQ +IP++L+G DV+A A+TG+GKT + LP++ R
Sbjct: 3 FSDLGLNSLICNALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQR 62
Query: 88 LFNESSPKSKLAPA-ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
L ++ PK++ L+L PTREL Q+ + I++ ++ + + +
Sbjct: 63 LLDQ--PKAQANRIKTLILTPTRELAAQIQEQ----IQIYAANTHIRSAVIFGGVSINPQ 116
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
L +I+IATPG + S ++ DSL VLDEAD +L G+ +DLK +
Sbjct: 117 MMKLRKGVEILIATPGRLLDLYSQNAVK----FDSLNTFVLDEADRMLDMGFINDLKKIH 172
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
++P+ Q L+ SAT SS++ L L+NP ++ DV + + K Q+ + + +
Sbjct: 173 NLLPKKLQTLMFSATFSSEIKNLANEFLNNPQFVS----ADVVNTTVKKITQKIY-TLDK 227
Query: 267 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
+K+ +++L+K + + + L+F+ T + A ++ L GI S+ ++ Q +R L
Sbjct: 228 SNKINALISLIKDQNLH-QVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKAL 286
Query: 327 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 386
+F + + L+ATD RGID +
Sbjct: 287 ADFKSNDINVLVATDIA---------------------------------ARGIDIAQLP 313
Query: 387 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
VIN ++ A YVHRIGRTGRA G ++SLVS DE++ I+ +G
Sbjct: 314 CVINLDLSNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSNIEHLIG 363
>gi|300121162|emb|CBK21543.2| unnamed protein product [Blastocystis hominis]
Length = 627
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 149/432 (34%), Positives = 208/432 (48%), Gaps = 59/432 (13%)
Query: 2 GKSKEIPSKEVKQAEEEE---------AEAEEEKSFEELGLDLRLVHALNKKGIQKPTLI 52
GK ++PS E AEE + + A +SF +L L L+ A+N+ G PT I
Sbjct: 137 GKPSKLPSNEEFWAEESQPSSSSSSSSSSATLARSFNQLRLSRPLLRAVNEMGFTTPTPI 196
Query: 53 QQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELC 112
Q IPL L GKD+ A AKTGSGKT AYLLP+L RL +++ ++ + L++ PTREL
Sbjct: 197 QARCIPLALAGKDICAAAKTGSGKTAAYLLPILERLLYKNNAQNLI--RVLIVAPTRELA 254
Query: 113 QQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGV 172
QQV++ L + L V L A DL+ PDIV+ TPG M V
Sbjct: 255 QQVHTIATKLTKYTSITCCLVVGGLPLQAQAVDLQRR----PDIVVCTPGRMID----HV 306
Query: 173 LQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKK 231
S S D +++++LDEAD LL G+ ++L L + P Q LL SAT + DV L
Sbjct: 307 HNSMSVDLDDVEVVILDEADRLLELGFTEELHELLRLCPVKRQTLLFSATMTDDVSDLIS 366
Query: 232 LILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTN 291
L L P + + V V D ++ QF E + +L+++ + + +IF
Sbjct: 367 LSLQKPVRVFVDPVNQVVDRLV-----QFIRVKDESLRTAMLLSIITRHF-KTETIIFAE 420
Query: 292 TIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQS 351
A L + L G+KSA L+ L Q RL L+ F+ D+LIATD
Sbjct: 421 RKAEAHLLHIILGLLGLKSAELHGNLNQTQRLRALDRFSKKEVDFLIATD---------- 470
Query: 352 DEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAY 411
RG+D K V TVIN MP+ A Y+HR+GRT RA
Sbjct: 471 -----------------------VAARGLDIKGVQTVINLHMPKEEATYIHRVGRTARAG 507
Query: 412 NTGASVSLVSPD 423
+ G +V+ V D
Sbjct: 508 HAGRAVTFVEED 519
>gi|424902637|ref|ZP_18326153.1| ATP-dependent RNA helicase 2 [Burkholderia thailandensis MSMB43]
gi|390933012|gb|EIP90412.1| ATP-dependent RNA helicase 2 [Burkholderia thailandensis MSMB43]
Length = 482
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 131/416 (31%), Positives = 212/416 (50%), Gaps = 54/416 (12%)
Query: 25 EKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPL 84
+ +F++ GL ++ A+ ++G PT IQ +IP++L G+DV+ A+TG+GKT ++ LP+
Sbjct: 10 DATFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPI 69
Query: 85 LHRLF---NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELC--KGQVQLKVVQLTS 139
+ RL N S+ ++ AL+L PTREL QV + V A + + V V +
Sbjct: 70 IQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNP 129
Query: 140 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE 199
M ++LR + +I+IATPG L V Q + ++ILVLDEAD +L G+
Sbjct: 130 QM--AELRRGV----EILIATPG----RLLDHVQQKTANLGQVQILVLDEADRMLDMGFL 179
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
DL+ + ++P+ Q LL SAT S ++ KL L +P + + + V Q
Sbjct: 180 PDLQRILNLLPKERQTLLFSATFSPEIKKLASTYLRDPQTIEV-----ARSNAAASTVTQ 234
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+E DK ++ L++ + K+ ++F N+ A RL +E+ GI +A ++ + Q
Sbjct: 235 IVYDVAEGDKQAAVVKLIR-DRSLKQVIVFCNSKIGASRLARQIERDGIVAAAIHGDRSQ 293
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
+ R+ L+ F G + L+ATD RG
Sbjct: 294 SERMQALDAFKRGEIEALVATDVA---------------------------------ARG 320
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+D + VINF++P NA YVHRIGRTGRA +G ++SL SP+E K +I+ +
Sbjct: 321 LDIVELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLADIEKLI 376
>gi|441504874|ref|ZP_20986866.1| ATP-dependent RNA helicase RhlE [Photobacterium sp. AK15]
gi|441427456|gb|ELR64926.1| ATP-dependent RNA helicase RhlE [Photobacterium sp. AK15]
Length = 498
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 138/415 (33%), Positives = 205/415 (49%), Gaps = 60/415 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF LGL ++ A+ +G +KP+ IQ +IP +LEGKDV+A A+TG+GKT + LP+L
Sbjct: 2 SFASLGLCTPILEAVANQGYEKPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPILE 61
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQV------YSEVMALIELCKGQVQLKVVQLTSS 140
RL +S AL+L PTREL QV YS+ + L V V++
Sbjct: 62 RLSKGPIVRSNQV-RALILTPTRELAAQVGENVATYSKRLPL----SSAVVFGGVKINPQ 116
Query: 141 MPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYED 200
M +R D+++ATPG + + ++ + L++LVLDEAD +L G+
Sbjct: 117 M--MRMRKGA----DVLVATPGRLLDLYNQNAVK----FNQLEVLVLDEADRMLDMGFIR 166
Query: 201 DLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF 260
D+K + A++P+ Q LL SAT S ++ +L K ++++P E+ K V+Q
Sbjct: 167 DIKKILALLPKQRQNLLFSATFSDEIRELAKGLVNDPV-----EISVTPRNTTAKTVKQ- 220
Query: 261 WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 320
WI ++ K +LT L + K+AL+FT T A RL +LE I +A ++ Q
Sbjct: 221 WIHPVDKKKKPAVLTKLIQDNKWKQALVFTRTKHGANRLTAYLEARDITAAAIHGNKSQG 280
Query: 321 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 380
+R L F +G L+ATD RGI
Sbjct: 281 ARTKALANFKSGEVRILVATDI---------------------------------AARGI 307
Query: 381 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
D + V+NF++P A YVHRIGRTGRA G ++SLV DE K +I+
Sbjct: 308 DIDQLPQVVNFDLPNVAEDYVHRIGRTGRAGAEGQAISLVCADEFKELTDIERLT 362
>gi|221502154|gb|EEE27898.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii VEG]
Length = 479
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 148/470 (31%), Positives = 236/470 (50%), Gaps = 62/470 (13%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
+F LGL L +++ G + PT IQ +P L+G+D++A A+TGSGKT A+ LP+L
Sbjct: 52 TFASLGLCSELCASVSTLGWKSPTAIQSEVLPYALQGRDIIALAETGSGKTAAFGLPILQ 111
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
RL + AL+L PTRELC Q+ +++A+ G + + VV L + +
Sbjct: 112 RLLQRTQRFY-----ALILAPTRELCLQISQQILAM----GGTLGVTVVTLVGGLDHNTQ 162
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKAL 205
ALA P +V+ +PG + L Q+K FS S+K+LVLDEAD LLS ++ L+ L
Sbjct: 163 AIALAKKPHVVVGSPGRVVDHLQ----QTKGFSLKSVKVLVLDEADRLLSLDFDAALQVL 218
Query: 206 SAVI--PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWIS 263
+ P Q +L SAT ++ V KL+K L P L EV D + ++QQ ++
Sbjct: 219 LEHVGSPAERQTMLFSATMTTKVSKLQKASLKKPVKL---EVNSKYD--VASHLQQHFLL 273
Query: 264 CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+ K ++ L L L ++FTNT A + LFL G +S L+ ++ Q R+
Sbjct: 274 VPFKLKHTHLAAAL-LHLSPSSVIVFTNTCANARKTALFLRHLGFQSVCLHGKMTQPQRI 332
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
L +F A L+AT+ V S RG+D
Sbjct: 333 GALTKFRAAETSCLVATE---------------VGS------------------RGLDIP 359
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDS 443
+V VINF++P ++ Y+HR+GRT RA TG ++++V+ +++ ++ I+ +G E +
Sbjct: 360 HVQMVINFDVPLSSKEYIHRVGRTARAGRTGRALTIVTQYDVEAYQRIEHALGQKLEELT 419
Query: 444 NIIAPFPL--LAQNAVESLR-----YRAEDVAKSVTKIAVRESRAQDLRN 486
+ A + L + +E+LR R D A V K A ++ A + R+
Sbjct: 420 ELTATEKVMPLHEKVLEALRSAELEAREADEAALVQKAAKKKRGAGNKRS 469
>gi|119494918|ref|XP_001264258.1| ATP-dependent RNA helicase (Drs1), putative [Neosartorya fischeri
NRRL 181]
gi|142982588|sp|A1D1R8.1|DRS1_NEOFI RecName: Full=ATP-dependent RNA helicase drs1
gi|119412420|gb|EAW22361.1| ATP-dependent RNA helicase (Drs1), putative [Neosartorya fischeri
NRRL 181]
Length = 819
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 154/512 (30%), Positives = 239/512 (46%), Gaps = 78/512 (15%)
Query: 16 EEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSG 75
E+ A + +SF++ L ++ L PT IQQ +IP+ L GKD+V A TGSG
Sbjct: 289 EKSTAASTSNRSFQDFNLSRPILRGLASVNFTTPTPIQQKTIPVALLGKDIVGSAVTGSG 348
Query: 76 KTFAYLLPLLHRLF--NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLK 133
KT A+++P+L RL P S++A +L+PTREL Q Y+ L +
Sbjct: 349 KTAAFVVPILERLLFRPRKVPTSRVA----ILMPTRELAVQCYNVATKLAT----HTDIT 400
Query: 134 VVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADL 192
QL + L PD++IATPG + S SF+ D+L+ILVLDEAD
Sbjct: 401 FCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRN----SPSFTVDTLEILVLDEADR 456
Query: 193 LLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEV 252
+L G+ D+L + IP+ Q +L SAT + VDKL ++ L+ P L + D K
Sbjct: 457 MLEDGFADELNEILTTIPQSRQTMLFSATMTDSVDKLIRVGLNRPVRLMV----DSKKNT 512
Query: 253 IPKNVQQF-WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 311
Q+F + DK L L L E+ + ++F A R+++ G+K+A
Sbjct: 513 SMNLTQEFVRLRPGREDKRLGYLLYLCNEIYTGRVIVFFRQKREAHRVRIVFGLLGLKAA 572
Query: 312 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLD 371
L+ + Q R+ +E F G +L+ATD L
Sbjct: 573 ELHGSMSQEQRIKSVENFREGKVAFLLATD----------------------------LA 604
Query: 372 SEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 431
S RG+D K V TVIN+E PQ+ Y+HR+GRT RA +G + ++ + + KI +
Sbjct: 605 S-----RGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKI---V 656
Query: 432 KSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNS 491
KS V + + + I++ R D A + A + +D E+L
Sbjct: 657 KSAVKAGKAQGAKIVS---------------RVVDPA-VADEWAAKAKGLEDEIEEVLQE 700
Query: 492 EKL-----KAHFEVNPKDLDLLKHDKDLSKKP 518
EKL +A +V K +++KH+ ++ +P
Sbjct: 701 EKLEKQMAQAEMQVT-KGENMIKHEAEIMSRP 731
>gi|254428748|ref|ZP_05042455.1| DEAD/DEAH box helicase domain protein [Alcanivorax sp. DG881]
gi|196194917|gb|EDX89876.1| DEAD/DEAH box helicase domain protein [Alcanivorax sp. DG881]
Length = 450
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 139/411 (33%), Positives = 206/411 (50%), Gaps = 51/411 (12%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF +L L RL+ AL + I PT +Q A+IP LEG+D+ A+TGSGKT A+LLP+LH
Sbjct: 3 SFADLNLHERLIKALGELEITTPTPVQTAAIPAALEGRDLRVVARTGSGKTAAFLLPMLH 62
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
+L S P++ AL+L+PTREL QQ +V AL G+ +L + +
Sbjct: 63 QLLQYSRPRTD--TRALILLPTRELAQQTLKQVEAL-----GRYTFIKAELLTGGEDFKV 115
Query: 147 RAA-LAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL 205
+AA + P+I+I TPG + + L G L L++LVLDE+D +L G+ DD+ L
Sbjct: 116 QAAKMRKNPEILIGTPGRLIEHLDAGNL----LLQDLEMLVLDESDRMLDMGFNDDVLRL 171
Query: 206 SAVIPRGCQCLLMSATSSSD-VDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264
+A Q LL SAT+ + ++ + +L +P L L V D+ + V QQ +
Sbjct: 172 AAECRAERQTLLFSATTGGNAMENMISSVLRDPKSLVLDSVRDLNESV----SQQIITAD 227
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
+ K + LL E + KA++FTNT + A RL L +K +L+ E Q R
Sbjct: 228 DVKHKERLVQWLLANETYE-KAVVFTNTREQADRLGGVLVASNLKVFVLHGEKDQKDRKL 286
Query: 325 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 384
++ AG L+ATD RGI N
Sbjct: 287 AMDRLKAGAVKVLVATDV---------------------------------AARGIHVDN 313
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ VINF+MP++ YVHRIGRTGR G ++SL++ E + I+ ++
Sbjct: 314 LDLVINFDMPRSGDEYVHRIGRTGRVGGEGTAISLIAAHEWNLMAGIQRYL 364
>gi|167918160|ref|ZP_02505251.1| DEAD/DEAH box helicase [Burkholderia pseudomallei BCC215]
Length = 414
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 132/416 (31%), Positives = 212/416 (50%), Gaps = 54/416 (12%)
Query: 25 EKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPL 84
+ +F++ GL ++ A+ ++G PT IQ +IP++L G+DV+ A+TG+GKT ++ LP+
Sbjct: 10 DATFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPI 69
Query: 85 LHRLF---NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELC--KGQVQLKVVQLTS 139
+ RL N S+ ++ AL+L PTREL QV + V A + + V V +
Sbjct: 70 IQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNP 129
Query: 140 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE 199
M ++LR + +I+IATPG L V Q + ++ILVLDEAD +L G+
Sbjct: 130 QM--AELRRGV----EILIATPG----RLLDHVQQKTANLGQVQILVLDEADRMLDMGFL 179
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
DL+ + ++P+ Q LL SAT S ++ KL L NP + + + V Q
Sbjct: 180 PDLQRILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEV-----ARSNAAASTVTQ 234
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+E DK ++ L++ + K+ ++F N+ A RL +E+ GI +A ++ + Q
Sbjct: 235 IVYDVAEGDKQAAVVKLIR-DRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQ 293
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
+ R+ L+ F G + L+ATD RG
Sbjct: 294 SERMQALDAFKRGEIEALVATDVA---------------------------------ARG 320
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+D + VINF++P NA YVHRIGRTGRA +G ++SL SP+E K +I+ +
Sbjct: 321 LDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLADIEKLI 376
>gi|354480665|ref|XP_003502525.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Cricetulus
griseus]
Length = 788
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 142/417 (34%), Positives = 200/417 (47%), Gaps = 49/417 (11%)
Query: 17 EEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGK 76
E+ +E ++ SF+++ L L+ A+ G ++PT IQ+A IP+ L GKD+ A A TG+GK
Sbjct: 202 EDASEYDKSLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGK 261
Query: 77 TFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQ 136
T A+ LP+L RL + P+ LVLVPTREL QV+S L + C L V
Sbjct: 262 TAAFALPVLERLIYK--PRQAAVTRVLVLVPTRELGIQVHSVTKQLAQFCSVTTCLAVGG 319
Query: 137 LTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLS 195
L + LRAA PDI+IATPG + L SF S+++L+LDEAD +L
Sbjct: 320 LDVKSQEAALRAA----PDILIATPGRLIDHLHN----CPSFHLSSIEVLILDEADRMLD 371
Query: 196 YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK 255
+E+ +K + + Q +L SAT + +V L + L NP + + D V P
Sbjct: 372 EYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTD----VAPF 427
Query: 256 NVQQFW-ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILN 314
Q+F I + I+ L + ++FT T A R+ + L G++ L+
Sbjct: 428 LRQEFIRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLLGLQVGELH 487
Query: 315 AELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEF 374
L Q RL L F D L+ATD
Sbjct: 488 GNLSQTQRLEALRRFKDEQIDILVATD--------------------------------- 514
Query: 375 GVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 431
RG+D + V TVINF MP YVHR+GRT RA G SVSLV +E K+ +EI
Sbjct: 515 VAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEI 571
>gi|261377495|ref|ZP_05982068.1| putative ATP-dependent RNA helicase RhlE [Neisseria cinerea ATCC
14685]
gi|269146228|gb|EEZ72646.1| putative ATP-dependent RNA helicase RhlE [Neisseria cinerea ATCC
14685]
Length = 473
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 129/413 (31%), Positives = 203/413 (49%), Gaps = 55/413 (13%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F +L LD ++ A++ +G + PT IQ +IP LEG+D++A A+TGSGKT A+LLP L R
Sbjct: 5 FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
L S K P ALVL PTREL QV +A K + V +
Sbjct: 65 LTKRSEKPGK-GPRALVLTPTRELAAQVEKNALA---YAKNMRWFRTVSIVGGASFGYQT 120
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
AL+ P D+++ATPG + + +G + F+ L++L+LDEAD +L G+ DD++ +
Sbjct: 121 RALSKPVDLIVATPGRLMDLMQSGKV---DFT-RLEVLILDEADRMLDMGFIDDIETIVE 176
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE- 266
P Q LL SAT V KL + + +P ++ + V D +++ + C +
Sbjct: 177 ATPADRQTLLFSATWDGAVGKLARKLTKDPEVIEVERVDD------QGKIEEQLLYCDDM 230
Query: 267 --RDKLL-YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+++LL +IL ++ + +IFT+T M + L + G + L+ ++PQ R
Sbjct: 231 RHKNRLLDHILRDANID----QCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRN 286
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
L + G L+ATD RGID
Sbjct: 287 RTLMDLRKGRCKILVATDV---------------------------------AARGIDVP 313
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
+ VIN+++P+ A YVHRIGRTGRA TG +++ +E +I+ ++G
Sbjct: 314 TITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYIG 366
>gi|417412705|gb|JAA52724.1| Putative atp-dependent rna helicase, partial [Desmodus rotundus]
Length = 788
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 139/417 (33%), Positives = 197/417 (47%), Gaps = 49/417 (11%)
Query: 17 EEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGK 76
E+ ++ +E SF+++ L L+ A+ ++PT IQ+A IP+ L GKD+ A A TG+GK
Sbjct: 201 EDASQYDENLSFQDMNLSRPLLKAITAMNFKQPTPIQKACIPVGLLGKDICACAATGTGK 260
Query: 77 TFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQ 136
T A+ LP+L RL + P+ LVLVPTREL QV+S V L + C L V
Sbjct: 261 TAAFALPILERLIYK--PRQAPVTRVLVLVPTRELGIQVHSVVKQLAQFCSITTCLAV-- 316
Query: 137 LTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLS 195
+ AAL PDI+IATPG + L SF S+++L+LDEAD +L
Sbjct: 317 --GGLDVKSQEAALRAVPDILIATPGRLIDHLHN----CPSFHLSSIEVLILDEADRMLD 370
Query: 196 YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK 255
+E+ +K + + Q +L SAT + +V L + L NP + + + +V P
Sbjct: 371 EYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFV----NSNTDVAPF 426
Query: 256 NVQQFW-ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILN 314
Q+F I + I+ L ++FT T A R+ + L G++ L+
Sbjct: 427 LRQEFIRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELH 486
Query: 315 AELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEF 374
L Q RL L F D L+ATD
Sbjct: 487 GNLSQAQRLEALRRFKDEQIDILVATD--------------------------------- 513
Query: 375 GVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 431
RG+D V TVINF MP YVHR+GRT RA G SVSLV +E K+ +EI
Sbjct: 514 VAARGLDIAGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEI 570
>gi|224137340|ref|XP_002322533.1| predicted protein [Populus trichocarpa]
gi|222867163|gb|EEF04294.1| predicted protein [Populus trichocarpa]
Length = 443
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 146/455 (32%), Positives = 222/455 (48%), Gaps = 66/455 (14%)
Query: 19 EAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTF 78
E + E EK+F +LGL LV A G +KPT IQ+ +IP L+GKD++ A TGSGKT
Sbjct: 3 EDKQETEKTFADLGLCKELVEACENLGWKKPTKIQEEAIPYALQGKDLIGVAATGSGKTG 62
Query: 79 AYLLPLLHRLFNESSPKSKLAP-AALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQL 137
A++LP L + +S + + P VL PTREL Q+ + AL + ++ V L
Sbjct: 63 AFVLPTLEAILKDSQERKSVQPFFVCVLSPTRELAIQIAEQFEAL----GSGIGVRCVVL 118
Query: 138 TSSMPASDLRAALAGP-PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLS 195
LA P +++ TPG + LS +K FS +LK L+LDEAD LLS
Sbjct: 119 VGGEDMLQQSIVLAKKRPHVIVGTPGRLADHLS----NTKGFSLHALKYLILDEADRLLS 174
Query: 196 YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK 255
+E L + IPR + L SAT ++ KL++ L NP + K ++
Sbjct: 175 MDFEKSLDEILKAIPRNRRTYLFSATMTNKAGKLQRACLRNPVKIE----AAFKYSIVDT 230
Query: 256 NVQQFW-ISCSERD-KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAIL 313
Q F+ + + +D L+++L+ K +++FT T L L L K G+ + +
Sbjct: 231 LEQGFYFMPAALKDCYLVHVLSSKK----GATSMVFTRTCRETDFLALVLRKLGLGAIPI 286
Query: 314 NAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSE 373
N ++ Q++RL L +F AG F+ LI TD
Sbjct: 287 NGQMSQSNRLGALNKFKAGEFNILICTDVAS----------------------------- 317
Query: 374 FGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKS 433
RG+D +V V+N+ +P NA Y HR+GRT RA +G ++SLV+ ++ F++I+
Sbjct: 318 ----RGLDILSVDVVVNYNIPTNAKDYFHRVGRTARAGRSGLAISLVNQFDIGPFKQIEK 373
Query: 434 FVGDD-------ENEDSNIIAPFPLLAQNAVESLR 461
+GDD NED + LLA+ E+ R
Sbjct: 374 HIGDDFKIPKYTANEDEVL-----LLAERVTEAKR 403
>gi|254515124|ref|ZP_05127185.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium NOR5-3]
gi|219677367|gb|EED33732.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium NOR5-3]
Length = 444
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 137/416 (32%), Positives = 204/416 (49%), Gaps = 57/416 (13%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F++LGL L+ A+ K+G + T IQQ +IPL+L+G D++A A+TG+GKT + LPLL R
Sbjct: 3 FKDLGLSAELLRAVEKQGYDEATPIQQKAIPLVLQGHDLLAGAQTGTGKTAGFTLPLLQR 62
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
L ++ K P LVL PTREL QV+ V + + + + +
Sbjct: 63 LQSKYQDVQKSFPKVLVLTPTRELAAQVHESVRDYGRYLP----FRSAVIFGGVSINPQK 118
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS-LKILVLDEADLLLSYGYEDDLKALS 206
L DIV+ATPG + +Q +S S ++ILVLDEAD +L G+ D++ +
Sbjct: 119 QKLIKGVDIVVATPGRLLDH-----VQQRSIDLSRIEILVLDEADRMLDMGFIHDIRRVM 173
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC-- 264
VIP+ Q LL SAT SS++ KL L P + +V P+N +S
Sbjct: 174 KVIPKKRQTLLFSATFSSEIKKLASEFLEQPEQI----------QVTPQNTATTLVSQLV 223
Query: 265 --SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 322
++++ +L+ E ++ LIFT T A +L L+K GI +A ++ Q +R
Sbjct: 224 YPVDKNRKRELLSQQIGEGNWQQVLIFTRTKHGANKLAEQLDKDGISAAAIHGNKSQGAR 283
Query: 323 LHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDF 382
L +F AG L+ATD RGID
Sbjct: 284 TRALGDFKAGTIRALVATDIA---------------------------------ARGIDI 310
Query: 383 KNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD 438
+ V+NFE+P Y+HRIGRT RA G ++SLV DE+K+ +I+ +G D
Sbjct: 311 DKLPHVVNFELPNVPEDYIHRIGRTARAGQQGHAISLVCVDELKLLRDIEKLLGKD 366
>gi|443917623|gb|ELU38297.1| ATP-dependent rRNA helicase RRP3 [Rhizoctonia solani AG-1 IA]
Length = 1028
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 138/411 (33%), Positives = 204/411 (49%), Gaps = 55/411 (13%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
+F+ LGL L+ AL + G KPT IQ IP LEGKDV+ A+TGSGKT A+ LP+L
Sbjct: 97 TFDSLGLISPLLEALKQVGYSKPTEIQAGIIPHALEGKDVIGVAETGSGKTAAFALPILQ 156
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
+L++E P+ A VL PTREL Q+ + AL + ++ + M
Sbjct: 157 KLWDE--PRGLF---ACVLAPTRELAYQIAQQFEAL----GSAIGVRCATIVGGMDMMSQ 207
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKAL 205
AL G P I++ATPG + L +K FS L+ LVLDEAD LL + + +
Sbjct: 208 SIAL-GKPHIIVATPGRLNDHLE----NTKGFSLRGLRYLVLDEADRLLDMDFGPVIDKI 262
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
V+PR L SAT S+ V KL++ L NP + EV V + Q+++
Sbjct: 263 LKVLPRERNTFLFSATMSTKVAKLQRASLQNPVRV---EVNGKYSTV--STLLQYYLLTP 317
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
+K ++++ L EL +IFT T+ A RL + L G + L+ +L Q++RL
Sbjct: 318 FANKDVHLVHLAN-ELAANSIIIFTRTVHDAQRLSMVLRNLGFPAVPLHGQLSQSARLGA 376
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
L +F AG LIATD V G+D V
Sbjct: 377 LNKFKAGGRSLLIATD----------------------------------VASGLDIPTV 402
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
VINF++P ++ Y+HR+GRT RA G S++LV+ ++++ + I+ +G
Sbjct: 403 DVVINFDIPTHSKDYIHRVGRTARAGRAGKSITLVTQYDVELLQRIEGVIG 453
>gi|253573302|ref|ZP_04850645.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
oral taxon 786 str. D14]
gi|251846830|gb|EES74835.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
oral taxon 786 str. D14]
Length = 518
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 133/411 (32%), Positives = 205/411 (49%), Gaps = 76/411 (18%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
+F + GL+ +++ A+ + G ++ T IQ SIP+ L G+D++ +A+TG+GKT A+ LPL++
Sbjct: 3 TFADFGLEPKVLQAITELGFEEATPIQAKSIPIALSGRDLIGQAQTGTGKTAAFGLPLIN 62
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMP---- 142
++ PK + ALV+ PTREL QV E+ L KG T S+P
Sbjct: 63 KI-----PKEEDRIVALVMTPTRELAIQVAEEIGKLSRF-KG---------TRSLPIYGG 107
Query: 143 ---ASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE 199
+R AL P I+I TPG + ++ ++ D +K +VLDEAD +L G+
Sbjct: 108 QDIVRQIR-ALKKKPQIIIGTPGRLLDHINRKTIK----LDDVKTVVLDEADEMLDMGFM 162
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ- 258
DD++++ ++P Q +L SAT +++ KL + L NP ++ VIPK V
Sbjct: 163 DDIQSILKLVPEDRQTMLFSATMPANIQKLAQQFLKNPEHVS----------VIPKQVSA 212
Query: 259 ----QFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILN 314
Q +I ER K + LL +E + A++F T L L+K G + L+
Sbjct: 213 PLIDQAYIEVHERQKFDALTRLLDME-SPELAIVFGRTKRRVDELSEALQKQGYSADGLH 271
Query: 315 AELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEF 374
+L QN R +++ +F G D L+ATD
Sbjct: 272 GDLSQNQRDNVMRKFRDGSIDVLVATD--------------------------------- 298
Query: 375 GVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM 425
RG+D V V+NF++PQ+ YVHRIGRTGRA G + S V+P EM
Sbjct: 299 VAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGVAWSFVTPREM 349
>gi|114564376|ref|YP_751890.1| DEAD/DEAH box helicase [Shewanella frigidimarina NCIMB 400]
gi|114335669|gb|ABI73051.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
NCIMB 400]
Length = 477
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 142/421 (33%), Positives = 209/421 (49%), Gaps = 72/421 (17%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF LGL+ ++ A+ K+G P+ IQ +IP +L G+DV+A A+TG+GKT + LP+L
Sbjct: 2 SFSSLGLNAAILKAVEKQGYDTPSPIQAQAIPAVLAGQDVMAAAQTGTGKTAGFTLPILE 61
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMAL-IEL-CKGQVQLKVVQLTSSMPAS 144
L ++ + ALVL PTREL QV V + L K V V + +
Sbjct: 62 -LLSKGERAQRGQVRALVLTPTRELAAQVQESVATYGVNLPLKSAVVFGGVSIVPQL--- 117
Query: 145 DLRAALAGPPDIVIATPG-----CMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE 199
AAL DI++ATPG C K + SFS L+ILVLDEAD +L G+
Sbjct: 118 ---AALRNGVDILVATPGRLLDLCQQKAI--------SFS-KLEILVLDEADRMLDMGFI 165
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN--- 256
D+K + A++P Q L+ SAT S+++ +L K +++NP V+ V P+N
Sbjct: 166 RDIKKVLALLPAKRQNLMFSATFSNEIRELAKGLVNNP----------VEISVTPRNATA 215
Query: 257 --VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILN 314
V Q + K + ++ L+K K+ L+F+ T A RL LE GIK+A ++
Sbjct: 216 NTVTQCVYPVDKTRKSMALIELIKTN-DWKQVLVFSRTKHGANRLAKSLEAAGIKAAAIH 274
Query: 315 AELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEF 374
Q +R L +F AG ++ATD
Sbjct: 275 GNKSQTARTKALADFKAGAVQVMVATDIA------------------------------- 303
Query: 375 GVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 434
RGID + V+NF++P YVHRIGRTGRA +TG +VSLV +E+K+ +I+
Sbjct: 304 --ARGIDIDQLPFVVNFDLPNVPEDYVHRIGRTGRAGSTGQAVSLVGLEEVKLLHDIERL 361
Query: 435 V 435
+
Sbjct: 362 I 362
>gi|328773329|gb|EGF83366.1| hypothetical protein BATDEDRAFT_8371 [Batrachochytrium
dendrobatidis JAM81]
Length = 460
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 135/426 (31%), Positives = 215/426 (50%), Gaps = 55/426 (12%)
Query: 10 KEVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVAR 69
K+ +Q+ ++A+ E +FE +GL L+ +L I+ P+ IQQA IP IL G+D++
Sbjct: 17 KQTQQSTLKQAQVSESATFESIGLRPWLIGSLKSISIRHPSEIQQACIPHILNGRDIIGG 76
Query: 70 AKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQ 129
AKTGSGKT A+ LP+L +L + ALVL P REL Q+ + L
Sbjct: 77 AKTGSGKTAAFALPILQKL-----SEDPYGVFALVLTPARELAFQIAEQFRVL----GTG 127
Query: 130 VQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCL--STGVLQSKSFSDSLKILVL 187
+ LK+ + M L+ P ++IATPG + + S+ + K ++ LV+
Sbjct: 128 INLKLSVVVGGMDMMSQALELSQKPHVIIATPGRLVDHIRSSSNAIHFK----RIRFLVM 183
Query: 188 DEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGD 247
DEAD LL + DDL+ + + +P+ Q LL +AT + ++ +L+ P++ E
Sbjct: 184 DEADRLLDDTFSDDLEGILSQLPQKRQTLLFTATMTDEIKELQMSSKTLPFVYECAE--- 240
Query: 248 VKDEVIPKNVQQF-WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKF 306
+ + K QQ+ +S + RD Y+ +++ L K +IF + L++ L++
Sbjct: 241 -RYSTVEKLDQQYILVSSNVRDA--YLAHIVRESLSGKTMIIFASKCRTCETLRIMLKEL 297
Query: 307 GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHP 366
G+KS L+A++PQN RL L +F +G+ LIATD V S
Sbjct: 298 GLKSTALHAQMPQNDRLGSLAKFKSGIVPILIATD---------------VGS------- 335
Query: 367 KAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMK 426
RG+D V VIN+E+P +A Y+HR+GRT RA G S+S VS ++
Sbjct: 336 -----------RGLDIPTVKVVINYELPADATDYIHRVGRTARAGQGGMSLSFVSERDVD 384
Query: 427 IFEEIK 432
I I+
Sbjct: 385 IIHNIE 390
>gi|212722850|ref|NP_001131651.1| uncharacterized protein LOC100193011 [Zea mays]
gi|194692160|gb|ACF80164.1| unknown [Zea mays]
gi|413934956|gb|AFW69507.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
Length = 455
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 138/427 (32%), Positives = 215/427 (50%), Gaps = 50/427 (11%)
Query: 11 EVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARA 70
EV E+EA A + +F ELG+ LV A + G ++PT IQ +IP L+GKD++A A
Sbjct: 9 EVGGNGEQEAAARQASTFAELGICAELVEACDAMGWKEPTRIQAEAIPHALQGKDLIALA 68
Query: 71 KTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQV 130
+TGSGKT A+ LP+L L S+ +++ + A VL PTREL Q+ + AL +
Sbjct: 69 QTGSGKTGAFALPILQELL--SNRQAEQSFFACVLSPTRELAIQIAEQFEAL----GSAI 122
Query: 131 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDE 189
L+ L + ++ P IV+ TPG + L+ ++K FS +K LVLDE
Sbjct: 123 GLRCSVLVGGVDRVQQVLSIGKRPHIVVGTPGRLLDHLT----ETKGFSLKKIKYLVLDE 178
Query: 190 ADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVK 249
AD LL+ +E L + + +P+ + L SAT + V+KL++ L NP + + K
Sbjct: 179 ADKLLNVEFEKSLDDILSEMPKDRRTFLFSATMTKKVNKLQRACLRNPAKVEVSS----K 234
Query: 250 DEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIK 309
+ Q+F+ ++ DK Y+L +L E ++ +IF T + L L L G+K
Sbjct: 235 YSTVDSLKQEFYFVPAD-DKDCYLLHVLN-ERLESMIMIFVRTCESTRLLALMLRNLGLK 292
Query: 310 SAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAK 369
+ ++ ++ Q+ RL L F A + LI TD
Sbjct: 293 AMSISGQMSQDKRLGALNRFKAKDCNILICTDVAS------------------------- 327
Query: 370 LDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFE 429
RG+D + V VIN+++P N+ YVHR+GRT RA +G +VSLV+ E + F
Sbjct: 328 --------RGLDIQGVDMVINYDIPMNSKDYVHRVGRTARAGRSGYAVSLVNQYEAQWFV 379
Query: 430 EIKSFVG 436
I+ +G
Sbjct: 380 LIEQLLG 386
>gi|78776226|ref|YP_392541.1| DEAD/DEAH box helicase [Sulfurimonas denitrificans DSM 1251]
gi|78496766|gb|ABB43306.1| DEAD/DEAH box helicase-like protein [Sulfurimonas denitrificans DSM
1251]
Length = 398
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 141/418 (33%), Positives = 213/418 (50%), Gaps = 60/418 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF LGL ++ A+ +G KPT IQ+ +IP+IL KD++A A+TG+GKT + LPLL
Sbjct: 2 SFTTLGLSAPILKAIKDQGYTKPTPIQKQAIPIILSKKDILAGAQTGTGKTAGFTLPLLE 61
Query: 87 RLF-NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASD 145
L ++SS K ++ AL+L PTREL QV V + K + TS++
Sbjct: 62 LLSRDKSSTKKRI--RALILTPTRELAAQVGESV---------SIYGKYLSFTSTIIYGG 110
Query: 146 LR-----AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYED 200
+ +AL DIVIATPG + LS + K ++ LVLDEAD +L G+ +
Sbjct: 111 VSINPQLSALRKGVDIVIATPGRLLDHLSQKSIDLK----DVEFLVLDEADRMLDMGFIN 166
Query: 201 DLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF 260
D+K + AV+P+ Q LL SAT S ++ KL +L++P ++ + + ++++Q
Sbjct: 167 DIKKVLAVLPKNKQTLLFSATYSDEIKKLSDRLLNSPVLIEVE-----RPNKTAQSIKQI 221
Query: 261 WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 320
+ K ++ L+K E ++ L+FT T A +L LEK GI S+ ++ QN
Sbjct: 222 VYPVDKERKRELLVHLIK-EGKWQQVLVFTRTKHGANKLSAQLEKDGISSSAIHGNKSQN 280
Query: 321 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 380
+R+ L+EF G L+ATD RGI
Sbjct: 281 ARMKALQEFKDGDIRVLVATDIA---------------------------------ARGI 307
Query: 381 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD 438
D + VIN+E+P YVHRIGRTGRA ++G ++SLV DE + I+ + D
Sbjct: 308 DIDQLPHVINYELPNVPEDYVHRIGRTGRAGSSGDAISLVCIDEHEYLSSIEKLIKTD 365
>gi|322692214|gb|EFY84155.1| dependent RNA helicase drs-1 [Metarhizium acridum CQMa 102]
Length = 780
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 139/425 (32%), Positives = 203/425 (47%), Gaps = 50/425 (11%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF+ + L ++ L G KPT IQ +IP+ L GKD+V A TGSGKT A+ +P+L
Sbjct: 254 SFQGMSLSRPILRGLAAVGFTKPTPIQAKTIPIALMGKDLVGGAVTGSGKTGAFFVPILE 313
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
RL PK +VL PTREL Q + L + L V L+ +L
Sbjct: 314 RLL--FRPKKIPTTRVVVLTPTRELAMQCHDVGTKLARYTDIKFSLAVGGLSLKAQEVEL 371
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKAL 205
R PDI++ATPG + S SF+ D+++ILVLDEAD +L G+ D+L +
Sbjct: 372 RLR----PDIIVATPGRFIDHMRN----SASFNVDTVEILVLDEADRMLEDGFADELNEI 423
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-WISC 264
+P+ Q +L SAT +S VD+L + L+ P L + D + + + VQ+F +
Sbjct: 424 LTTLPKSRQTMLFSATMTSTVDRLIRAGLNKPVRLMV----DSQKKTVTTLVQEFVRLRP 479
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
DK + L L ++ +IF A R ++ G+ A L+ + Q+ R+
Sbjct: 480 GREDKRMGYLAYLCKTFYHERVIIFFRQKKEAHRARIIFGLLGLSCAELHGSMNQSQRIS 539
Query: 325 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 384
+E F G YL+ATD L S RG+D K
Sbjct: 540 SVEAFRDGKVSYLLATD----------------------------LAS-----RGLDIKG 566
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFE-EIKSFVGDDENEDS 443
V TVIN+E PQ+ YVHR+GRT RA G +V+L + + K+ + +K+ S
Sbjct: 567 VDTVINYEAPQSLEIYVHRVGRTARAGRKGTAVTLAAEGDRKVVKAAVKAGKAQGAKITS 626
Query: 444 NIIAP 448
IIAP
Sbjct: 627 RIIAP 631
>gi|237831677|ref|XP_002365136.1| ATP-dependent nucleolar RNA helicase, putative [Toxoplasma gondii
ME49]
gi|211962800|gb|EEA97995.1| ATP-dependent nucleolar RNA helicase, putative [Toxoplasma gondii
ME49]
gi|221506698|gb|EEE32315.1| ATP-dependent nucleolar RNA helicase, putative [Toxoplasma gondii
VEG]
Length = 888
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 126/333 (37%), Positives = 192/333 (57%), Gaps = 26/333 (7%)
Query: 26 KSFEELG---LDLRLVH-ALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYL 81
++FEE G LD RL A+ +Q PT +Q IPL L+GKD++A+A+TGSGKT AY
Sbjct: 186 QTFEEFGSLYLDRRLARVAVQHMQLQHPTHVQAQVIPLALQGKDLLAQARTGSGKTLAYA 245
Query: 82 LPLLHRLFNESSPKSKLAP-----AALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQ 136
LPLL RL + P ALVLVP++ELC Q++ ++L++ C+ + +
Sbjct: 246 LPLLQRLLERREEERATQPRPEGLEALVLVPSKELCLQIHEVFVSLLKYCRDLISVNHTA 305
Query: 137 LTSSMPASDLRAALAGPPDIVIATPGCMPKCLST--GVLQSKSF-SDSLKILVLDEADLL 193
SS S L L PP ++I TP + + G KS +LK+LV DEADLL
Sbjct: 306 FASS---SSLVPFL--PPSVLIGTPAGVVSYMGKLDGSASVKSLLQRNLKVLVADEADLL 360
Query: 194 LSYGYEDDLKALSAVIP----RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVK 249
LS+G+E+++ L A +P R Q LL+SAT + +V KL++++LH ++ E+ D
Sbjct: 361 LSFGFENEMNRLLACLPATAERHYQALLLSATLNEEVAKLQQMLLHKAVMV---EIDDTL 417
Query: 250 DEVIPKNVQQFWISCSER-DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGI 308
+ + +F++S + DK + + LKL LV +K LIFT+ + A+ +++FLE+FGI
Sbjct: 418 QQA-SSQLSEFYLSLPKAGDKWVVLYAFLKLNLVPRKCLIFTSGVSSAYGVRIFLERFGI 476
Query: 309 KSAILNAELPQNSRLHILEEFNAGLFDYLIATD 341
+L+ L SR +++ FN GL + LI TD
Sbjct: 477 GCGVLSPTLSIESRQSLIQAFNKGLLEILITTD 509
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 78/218 (35%), Positives = 123/218 (56%), Gaps = 19/218 (8%)
Query: 371 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS---PDEMKI 427
D EFG RG+D ++V V++F+MP++ GY+HRIGR GR G SV LVS E+ +
Sbjct: 598 DDEFGSHRGLDLQSVACVLSFDMPRSIRGYIHRIGRAGRGGAPGISVCLVSQAAAREVLL 657
Query: 428 FEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNE 487
++ ++ + S + P L Q+ VE RYR EDV + VTK + A++L+ E
Sbjct: 658 LHKLVQLRRENNDAGSTALKPLSLRLQD-VECFRYRVEDVCRGVTKRVIAALVAKELQQE 716
Query: 488 ILNSEKLKAHFEVNPKDLDLLK------HDKDLSKKPPASHLRDVPDYLLDAKT----QE 537
+L S K++ F+ NP+D ++L+ D+ L+ + HL+ +P YLL A+T +
Sbjct: 717 VLRSRKMRDFFKRNPRDEEVLRAACKQLKDRALAGR---GHLQHLPSYLL-AQTPPAQKT 772
Query: 538 ACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSFSA 575
A ++ A+ A G K + + G +R+ DPLKSF A
Sbjct: 773 AVQLAVEAQTARGPKATQEKLGVKRRT-LVDPLKSFRA 809
>gi|386312353|ref|YP_006008518.1| DEAD/DEAH box helicase [Shewanella putrefaciens 200]
gi|319424978|gb|ADV53052.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
Length = 635
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 124/411 (30%), Positives = 208/411 (50%), Gaps = 52/411 (12%)
Query: 22 AEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYL 81
+ +E++F ELGL L+ AL++ G +KPT IQ ASI ++ GKD++ +A+TG+GKT A+
Sbjct: 2 SSDERTFRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFA 61
Query: 82 LPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSM 141
LPLL+++ ++++P+ LVL PTREL QV + + K V+ +
Sbjct: 62 LPLLNKVTSQTTPQ------ILVLAPTRELAVQVAEAFSSYAKFMK---NFHVLPIYGGQ 112
Query: 142 PASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDD 201
AL P +++ TPG + + G L+ DSLK LVLDEAD +L G+ DD
Sbjct: 113 SMQQQLNALKRGPQVIVGTPGRVMDHMRRGTLK----LDSLKALVLDEADEMLKMGFIDD 168
Query: 202 LKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW 261
++ + P Q L SAT + ++ L +P + + + ++++Q +
Sbjct: 169 IEWILEHTPSERQLALFSATMPEQIKRVANQHLRSPVHVRIE-----SSQTTVESIEQRF 223
Query: 262 ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 321
+ S+ +KL ++ +L++E + +IF T + L LE G S+ L+ ++ Q +
Sbjct: 224 VQVSQHNKLEALVRVLEVENTE-GVIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQA 282
Query: 322 RLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGID 381
R +++ G D LIATD RG+D
Sbjct: 283 RERAVDQLKRGKLDILIATD---------------------------------VAARGLD 309
Query: 382 FKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432
+ + V+N+++P +A YVHRIGRTGRA TG ++ V+ EM++ I+
Sbjct: 310 VERIGHVVNYDIPYDAEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIE 360
>gi|186475195|ref|YP_001856665.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
phymatum STM815]
gi|184191654|gb|ACC69619.1| DEAD/DEAH box helicase domain protein [Burkholderia phymatum
STM815]
Length = 522
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 142/411 (34%), Positives = 200/411 (48%), Gaps = 50/411 (12%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF+ LGL LV A+N+ G PT IQQ +IP +L G D++A A+TG+GKT + LP+L
Sbjct: 2 SFDSLGLSEPLVRAVNELGYTSPTPIQQQAIPAVLNGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 87 RLFN-ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASD 145
RL +P K AL+L PTREL QV V A + K LK + + +
Sbjct: 62 RLLTMPPAPGGKRVVRALILTPTRELAAQVEESVRAYGKYLK----LKSTVMFGGVGINP 117
Query: 146 LRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS-LKILVLDEADLLLSYGYEDDLKA 204
AL DIV+ATPG + +Q K+ S L+ILVLDEAD +L G+ D+K
Sbjct: 118 QIDALRRGVDIVVATPGRL-----LDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKR 172
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264
+ A +P Q LL SAT S ++ L +L P ++ + + V K I
Sbjct: 173 VLAKLPPKRQNLLFSATFSDEIKALADSLLDAPALIEVARRNTTAETVAQK------IHP 226
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
+RD+ +LT L + + L+FT T A RL L K GI + ++ Q++R
Sbjct: 227 VDRDRKRELLTHLIKQHNWFQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTR 286
Query: 325 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 384
L EF L+ATD RGID
Sbjct: 287 ALAEFKNNTLQVLVATDI---------------------------------AARGIDIDQ 313
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ V+NF++P YVHRIGRTGRA TG +VSLV DE+++ ++I+ +
Sbjct: 314 LPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLLKDIEKLI 364
>gi|389841642|ref|YP_006343726.1| ATP-dependent RNA helicase RhlE [Cronobacter sakazakii ES15]
gi|387852118|gb|AFK00216.1| ATP-dependent RNA helicase RhlE [Cronobacter sakazakii ES15]
Length = 474
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 137/416 (32%), Positives = 206/416 (49%), Gaps = 60/416 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF+ LGL ++ A+ ++G +PT IQ+ +IP++L GKD++A A+TG+GKT + LPLL
Sbjct: 2 SFDSLGLSPEILRAIAEQGYNEPTPIQRQAIPVVLSGKDLMASAQTGTGKTAGFTLPLLQ 61
Query: 87 RLF-NESSPKSKLAPAALVLVPTRELCQQV------YSEVMALIELCKGQVQLKVVQLTS 139
RL N+ PK + AL+L PTREL QV YS+ + + L V V +
Sbjct: 62 RLTANQPHPKGRRPVRALILTPTRELAAQVGENVREYSKYLDIRSL----VVFGGVSINP 117
Query: 140 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE 199
M L G D++IATPG + Q+ D +++LVLDEAD +L G+
Sbjct: 118 QM------MKLRGGVDVLIATPGRLLDLEH----QNAVKLDQVEVLVLDEADRMLDMGFI 167
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
D++ + A +P Q LL SAT S D+ L + +LHNP EV + + V Q
Sbjct: 168 HDIRRVLAKLPPKRQNLLFSATFSDDIKSLAEKLLHNPE-----EVEVARRNTASEQVTQ 222
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+ ++ + +L+ L + ++ L+FT T A L L K GI +A ++ Q
Sbjct: 223 H-VHFVDKKRKRELLSYLIGDGNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQ 281
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
+R L +F G L+ATD RG
Sbjct: 282 GARTRALADFKTGGIRVLVATDI---------------------------------AARG 308
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+D + + V+N+E+P YVHRIGRTGRA TG ++SLV DE K+ +I+ +
Sbjct: 309 LDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLL 364
>gi|221487015|gb|EEE25261.1| ATP-dependent nucleolar RNA helicase, putative [Toxoplasma gondii
GT1]
Length = 888
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 126/333 (37%), Positives = 192/333 (57%), Gaps = 26/333 (7%)
Query: 26 KSFEELG---LDLRLVH-ALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYL 81
++FEE G LD RL A+ +Q PT +Q IPL L+GKD++A+A+TGSGKT AY
Sbjct: 186 QTFEEFGSLYLDRRLARVAVQHMQLQHPTHVQAQVIPLALQGKDLLAQARTGSGKTLAYA 245
Query: 82 LPLLHRLFNESSPKSKLAP-----AALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQ 136
LPLL RL + P ALVLVP++ELC Q++ ++L++ C+ + +
Sbjct: 246 LPLLQRLLERREEERATQPRPEGLEALVLVPSKELCLQIHEVFVSLLKYCRDLISVNHTA 305
Query: 137 LTSSMPASDLRAALAGPPDIVIATPGCMPKCLST--GVLQSKSF-SDSLKILVLDEADLL 193
SS S L L PP ++I TP + + G KS +LK+LV DEADLL
Sbjct: 306 FASS---SSLLPFL--PPSVLIGTPAGVVSYMGKLDGSASVKSLLQRNLKVLVADEADLL 360
Query: 194 LSYGYEDDLKALSAVIP----RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVK 249
LS+G+E+++ L A +P R Q LL+SAT + +V KL++++LH ++ E+ D
Sbjct: 361 LSFGFENEMNRLLACLPATAERHYQALLLSATLNEEVAKLQQMLLHKAVMV---EIDDTL 417
Query: 250 DEVIPKNVQQFWISCSER-DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGI 308
+ + +F++S + DK + + LKL LV +K LIFT+ + A+ +++FLE+FGI
Sbjct: 418 QQA-SSQLSEFYLSLPKAGDKWVVLYAFLKLNLVPRKCLIFTSGVSSAYGVRIFLERFGI 476
Query: 309 KSAILNAELPQNSRLHILEEFNAGLFDYLIATD 341
+L+ L SR +++ FN GL + LI TD
Sbjct: 477 GCGVLSPTLSIESRQSLIQAFNKGLLEILITTD 509
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 78/218 (35%), Positives = 123/218 (56%), Gaps = 19/218 (8%)
Query: 371 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS---PDEMKI 427
D EFG RG+D ++V V++F+MP++ GY+HRIGR GR G SV LVS E+ +
Sbjct: 598 DDEFGSHRGLDLQSVACVLSFDMPRSIRGYIHRIGRAGRGGAPGISVCLVSQAAAREVLL 657
Query: 428 FEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNE 487
++ ++ + S + P L Q+ VE RYR EDV + VTK + A++L+ E
Sbjct: 658 LHKLVQLRRENNDAGSTALKPLSLRLQD-VECFRYRVEDVCRGVTKRVIAALVAKELQQE 716
Query: 488 ILNSEKLKAHFEVNPKDLDLLK------HDKDLSKKPPASHLRDVPDYLLDAKT----QE 537
+L S K++ F+ NP+D ++L+ D+ L+ + HL+ +P YLL A+T +
Sbjct: 717 VLRSRKMRDFFKRNPRDEEVLRAACKQLKDRALAGR---GHLQHLPSYLL-AQTPPAQKT 772
Query: 538 ACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSFSA 575
A ++ A+ A G K + + G +R+ DPLKSF A
Sbjct: 773 AVQLAVEAQTARGPKATQEKLGMKRRTL-VDPLKSFRA 809
>gi|440229962|ref|YP_007343755.1| DNA/RNA helicase, superfamily II [Serratia marcescens FGI94]
gi|440051667|gb|AGB81570.1| DNA/RNA helicase, superfamily II [Serratia marcescens FGI94]
Length = 455
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 134/412 (32%), Positives = 209/412 (50%), Gaps = 52/412 (12%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SFE LGL+ ++ A+ ++G ++PT IQ+ +IP++LEG+D++A A+TG+GKT + LP+L
Sbjct: 2 SFETLGLNAEILRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPVLQ 61
Query: 87 RLFNESSPKSKLAPA-ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASD 145
L ++ SP P AL+L PTREL Q+ V A + ++L+ + + + +
Sbjct: 62 LLSSKPSPVKGRRPVRALILTPTRELAAQIGENVSAYSQ----HLRLRSLVVFGGVSINP 117
Query: 146 LRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD--SLKILVLDEADLLLSYGYEDDLK 203
L G DI+IATPG + L+ ++ D +++ILVLDEAD +L G+ D++
Sbjct: 118 QMMKLRGGVDILIATPGRLLD------LEHQNAVDLSNVEILVLDEADRMLDMGFIHDIR 171
Query: 204 ALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWIS 263
+ A +P Q LL SAT S D+ L +LHNP + + ++V Q
Sbjct: 172 RVLAKLPAKRQNLLFSATFSDDIKALAGKLLHNPASVEVARRNTASEQV----TQHVHFV 227
Query: 264 CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+R + L L+ + E ++ L+FT T A L L K GI +A ++ Q +R
Sbjct: 228 DKKRKREL--LSQMIGEGDWRQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGART 285
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
L +F G L+ATD RG+D
Sbjct: 286 RALADFKDGRIRVLVATDIA---------------------------------ARGLDID 312
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ V+N+E+P YVHRIGRTGRA TG ++SLV DE K+ +I+ +
Sbjct: 313 QLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCIDEHKLLRDIERLL 364
>gi|152995016|ref|YP_001339851.1| DEAD/DEAH box helicase [Marinomonas sp. MWYL1]
gi|150835940|gb|ABR69916.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1]
Length = 463
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 138/420 (32%), Positives = 209/420 (49%), Gaps = 70/420 (16%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF +LGL ++ A+ +G +P+ IQ +IP ILEG+DV+A A+TG+GKT + LPLL
Sbjct: 6 SFNKLGLSAPILKAIEDQGYTEPSAIQAQAIPAILEGQDVMAAAQTGTGKTAGFTLPLLE 65
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQV------YSEVMALIELCKGQVQLKVVQLTSS 140
L + +S ALVL PTREL QV Y + ++L K V V++
Sbjct: 66 ILSKGENAQSNQV-RALVLTPTRELAAQVAESVKNYGQHLSL----KSTVVFGGVKINPQ 120
Query: 141 MPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYED 200
M AL DI+IATPG M + Q D L++LVLDEAD +L G+
Sbjct: 121 M------MALRRGADILIATPGRMMDLYN----QKAVRFDKLEVLVLDEADRMLDMGFIH 170
Query: 201 DLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN---- 256
D+K + A++P+ Q LL SAT S ++ +L K +++NP ++ V P+N
Sbjct: 171 DIKKILAILPKKRQNLLFSATFSPEIRQLAKGLVNNP----------IEISVTPRNATAV 220
Query: 257 -VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNA 315
V+Q W+ ++ + +L L + +AL+F+ T A ++ LE GI+++ ++
Sbjct: 221 SVEQ-WLHPVDKKRKTELLIQLIADGRWDQALVFSRTKHGANKITKQLEDAGIRASAIHG 279
Query: 316 ELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFG 375
Q +R L +F G L+ATD
Sbjct: 280 NKSQGARTRALADFKEGRIRILVATDI--------------------------------- 306
Query: 376 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
RG+D + + V+NF++P A YVHRIGRTGRA TG ++SLV+ DE+ I+
Sbjct: 307 AARGLDIEQLPHVVNFDLPDVAEDYVHRIGRTGRAGATGKAISLVAADELDQLRAIERLT 366
>gi|339482299|ref|YP_004694085.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas sp.
Is79A3]
gi|338804444|gb|AEJ00686.1| DEAD/DEAH box helicase domain protein [Nitrosomonas sp. Is79A3]
Length = 493
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 142/425 (33%), Positives = 212/425 (49%), Gaps = 76/425 (17%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
FE+LGL L+ A++ +G KPT IQ+ +IP+IL+G DV+ A+TG+GKT ++ LP+L R
Sbjct: 3 FEQLGLSTDLMRAISDQGYTKPTPIQEQAIPIILDGNDVMGGAQTGTGKTASFTLPMLRR 62
Query: 88 LFNESSPKSKLAPA-----ALVLVPTRELCQQVYSEVMALIEL--CKGQVQLKVVQLTSS 140
L E + ++PA AL+LVPTREL QV+ V + + V V + +
Sbjct: 63 L--EIYANTSMSPAKHPIRALILVPTRELAVQVHESVKTYGKYLPLRSTVIYGGVNIDAQ 120
Query: 141 MPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS-LKILVLDEADLLLSYGYE 199
+ A +R+ + +I++ATPG + LQ K+ S ++I +LDEAD +L G+
Sbjct: 121 INA--VRSGI----EILVATPGRLLDH-----LQQKTLGLSKIEIFILDEADRMLDMGFM 169
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNV-- 257
D+K + ++P Q L+ SAT S ++ KL IL NP ++ + + V E+I V
Sbjct: 170 PDIKQIIQLLPEKRQNLMFSATFSEEIKKLASKILKNPVLIEVAKQNSV-SELITHVVHP 228
Query: 258 ------QQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 311
Q+ IS +R KL + L+FT T A L +L GI SA
Sbjct: 229 VDTTRKQELLISLIKRQKL-------------HQVLVFTRTKQGADHLTKWLNHSGISSA 275
Query: 312 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLD 371
++ + Q R L F L L+ATD
Sbjct: 276 AIHGDRNQLQRTQALTNFKQSLIPVLVATDVA---------------------------- 307
Query: 372 SEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 431
RG+D + + VINFE+P N YVHRIGRTGRA G ++SLVS +E K+ +I
Sbjct: 308 -----ARGLDIEELTHVINFELPNNPEDYVHRIGRTGRAGTKGFAISLVSQEEKKLLIDI 362
Query: 432 KSFVG 436
+ +G
Sbjct: 363 ERVLG 367
>gi|157376983|ref|YP_001475583.1| DEAD/DEAH box helicase [Shewanella sediminis HAW-EB3]
gi|157319357|gb|ABV38455.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
HAW-EB3]
Length = 513
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 135/417 (32%), Positives = 205/417 (49%), Gaps = 48/417 (11%)
Query: 19 EAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTF 78
+A ++ SF LGL ++ A+ +KG P+ IQ +IP +LEGKDV+A A+TG+GKT
Sbjct: 16 KAPRDQSMSFTSLGLSAPILKAVAQKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTA 75
Query: 79 AYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLT 138
+ LPLL L + ++K ALVL PTREL QV V E + L+ +
Sbjct: 76 GFTLPLLELLTRGNRAQAKQV-RALVLTPTRELAAQVAESV----ETYGKNLPLRSAVVF 130
Query: 139 SSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGY 198
+ + L DI++ATPG + + L +F + L++L+LDEAD +L G+
Sbjct: 131 GGVGIGPQISKLGKGVDILVATPGRLLDLFNQRAL---NF-NQLEVLILDEADRMLDMGF 186
Query: 199 EDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ 258
D+K + V+P Q L+ SAT S D+ KL K +++NP E+ K V+
Sbjct: 187 IHDIKKILKVLPAKRQNLMFSATFSDDIRKLAKGLVNNPV-----EISVTPRNATAKTVE 241
Query: 259 QFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELP 318
Q+ ++ K ++ L+K + K+ L+F+ T A R+ LE + +A ++
Sbjct: 242 QYIYQVDQKQKTAALIHLIK-QNDWKQVLVFSRTKHGANRIAKNLEANDLTAAAIHGNKS 300
Query: 319 QNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVR 378
Q +R L F +G L+ATD R
Sbjct: 301 QGARTKALANFKSGEVRVLVATDI---------------------------------AAR 327
Query: 379 GIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
GID + V+NF++P YVHRIGRTGRA G +VSLVS DE K+ +I+ +
Sbjct: 328 GIDIDQLPNVVNFDLPNVPEDYVHRIGRTGRAGADGQAVSLVSGDESKLLRDIERLI 384
>gi|120600329|ref|YP_964903.1| DEAD/DEAH box helicase [Shewanella sp. W3-18-1]
gi|146291742|ref|YP_001182166.1| DEAD/DEAH box helicase [Shewanella putrefaciens CN-32]
gi|120560422|gb|ABM26349.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
gi|145563432|gb|ABP74367.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
CN-32]
Length = 640
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 124/411 (30%), Positives = 208/411 (50%), Gaps = 52/411 (12%)
Query: 22 AEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYL 81
+ +E++F ELGL L+ AL++ G +KPT IQ ASI ++ GKD++ +A+TG+GKT A+
Sbjct: 2 SSDERTFRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFA 61
Query: 82 LPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSM 141
LPLL+++ ++++P+ LVL PTREL QV + + K V+ +
Sbjct: 62 LPLLNKVTSQTTPQ------ILVLAPTRELAVQVAEAFSSYAKFMK---NFHVLPIYGGQ 112
Query: 142 PASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDD 201
AL P +++ TPG + + G L+ DSLK LVLDEAD +L G+ DD
Sbjct: 113 SMQQQLNALKRGPQVIVGTPGRVMDHMRRGTLK----LDSLKALVLDEADEMLKMGFIDD 168
Query: 202 LKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW 261
++ + P Q L SAT + ++ L +P + + + ++++Q +
Sbjct: 169 IEWILEHTPSERQLALFSATMPEQIKRVANQHLRSPVHVRIE-----SSQTTVESIEQRF 223
Query: 262 ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 321
+ S+ +KL ++ +L++E + +IF T + L LE G S+ L+ ++ Q +
Sbjct: 224 VQVSQHNKLEALVRVLEVENTE-GVIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQA 282
Query: 322 RLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGID 381
R +++ G D LIATD RG+D
Sbjct: 283 RERAVDQLKRGKLDILIATD---------------------------------VAARGLD 309
Query: 382 FKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432
+ + V+N+++P +A YVHRIGRTGRA TG ++ V+ EM++ I+
Sbjct: 310 VERIGHVVNYDIPYDAEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIE 360
>gi|408399032|gb|EKJ78157.1| hypothetical protein FPSE_01618 [Fusarium pseudograminearum CS3096]
Length = 793
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 134/403 (33%), Positives = 202/403 (50%), Gaps = 49/403 (12%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF+ + L ++ L G KPT IQ SIP+ L GKDVV A+TGSGKT A++LP+L
Sbjct: 258 SFQTMSLSRPIMRGLASVGFTKPTPIQAKSIPIALMGKDVVGGAETGSGKTGAFILPILE 317
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
RL PK +VL+PTREL Q ++ L + L V L S+ A +L
Sbjct: 318 RLLYR--PKKIPTTRVVVLLPTRELAIQCHAVATKLAAFTDIKFTLAVGGL--SLKAQEL 373
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKAL 205
L PD++IATPG + S SFS D+++ILVLDEAD +L G+ ++L +
Sbjct: 374 ELKLR--PDVIIATPGRFIDHMRN----SASFSVDTVEILVLDEADRMLEDGFAEELNEI 427
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-WISC 264
+P+ Q +L SAT +S VD+L + L+ P + + + + + + VQ+F +
Sbjct: 428 LTTLPKSRQTMLFSATMTSSVDRLISIGLNRPARVMV----NSQKKTVTTLVQEFVRLRP 483
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
DK + L + L +++ +IF A R ++ G+ A L+ + Q R+
Sbjct: 484 GREDKRMGYLAHVCKNLYKERVIIFFRQKKDAHRARIIFGLLGLSCAELHGSMNQTQRIS 543
Query: 325 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 384
+E+F G YL+ATD L S RG+D K
Sbjct: 544 SVEDFRDGKVAYLLATD----------------------------LAS-----RGLDIKG 570
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 427
V TVIN+E PQ+ YVHR+GRT RA G ++++ + + K+
Sbjct: 571 VDTVINYEAPQSLDIYVHRVGRTARAGRKGVALTIAAESDRKV 613
>gi|406596808|ref|YP_006747938.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii ATCC 27126]
gi|406598056|ref|YP_006749186.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii ATCC 27126]
gi|406374129|gb|AFS37384.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii ATCC 27126]
gi|406375377|gb|AFS38632.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii ATCC 27126]
Length = 483
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 137/412 (33%), Positives = 205/412 (49%), Gaps = 54/412 (13%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF +LGL L+ A+ K+G P+ IQ+ +IP +L+GKDV+A A+TG+GKT + LP+L
Sbjct: 2 SFTQLGLAEPLLKAIEKRGFSTPSPIQEKAIPEVLQGKDVLAAAQTGTGKTAGFGLPILQ 61
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIEL--CKGQVQLKVVQLTSSMPAS 144
RL E P S AL+L PTREL QV + A E K V V + M
Sbjct: 62 RLM-EGQPVSGNNVRALILTPTRELAAQVEESIRAFSEFLPLKTAVVFGGVGINPQM--M 118
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
LR + D++IATPG + ++ FS L++LVLDEAD +L G+ D++
Sbjct: 119 KLRKGV----DVLIATPGRLLDLYQQNAVK---FSQ-LEVLVLDEADRMLDMGFIHDIRR 170
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPY-ILTLPEVGDVKDEVIPKNVQQFWIS 263
+ ++P+ Q LL SAT S ++ L K I NP I T P V+ VQQ ++
Sbjct: 171 VLKLLPQERQSLLFSATFSDEITALAKTITRNPVSISTAPANTTVEA------VQQHLVT 224
Query: 264 CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+ K ++ L+K + + + L+F+ T A R+ L + I SA ++ Q +R
Sbjct: 225 IDKSKKTTALICLIKQQKWE-QVLVFSRTKHGANRIAEKLTRSKIPSAAIHGNKSQGART 283
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
L +F G L+ATD RGID
Sbjct: 284 KALADFKNGAIKVLVATDI---------------------------------AARGIDIS 310
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ V+N ++P AA YVHRIGRTGRA +G + S V +E++ ++I++ +
Sbjct: 311 ELPIVVNLDLPNTAADYVHRIGRTGRAGASGQAWSFVCAEELQNLKDIETLI 362
>gi|167814905|ref|ZP_02446585.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
91]
Length = 411
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 132/416 (31%), Positives = 212/416 (50%), Gaps = 54/416 (12%)
Query: 25 EKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPL 84
+ +F++ GL ++ A+ ++G PT IQ +IP++L G+DV+ A+TG+GKT ++ LP+
Sbjct: 10 DATFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPI 69
Query: 85 LHRLF---NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELC--KGQVQLKVVQLTS 139
+ RL N S+ ++ AL+L PTREL QV + V A + + V V +
Sbjct: 70 IQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNP 129
Query: 140 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE 199
M ++LR + +I+IATPG L V Q + ++ILVLDEAD +L G+
Sbjct: 130 QM--AELRRGV----EILIATPG----RLLDHVQQKTANLGQVQILVLDEADRMLDMGFL 179
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
DL+ + ++P+ Q LL SAT S ++ KL L NP + + + V Q
Sbjct: 180 PDLQRILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEV-----ARSNAAASTVTQ 234
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+E DK ++ L++ + K+ ++F N+ A RL +E+ GI +A ++ + Q
Sbjct: 235 IVYDVAEGDKQAAVVKLIR-DRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQ 293
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
+ R+ L+ F G + L+ATD RG
Sbjct: 294 SERMQALDAFKRGEIEALVATDVA---------------------------------ARG 320
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+D + VINF++P NA YVHRIGRTGRA +G ++SL SP+E K +I+ +
Sbjct: 321 LDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLADIEKLI 376
>gi|429122441|ref|ZP_19183020.1| ATP-dependent RNA helicase RhlE [Cronobacter sakazakii 680]
gi|426323043|emb|CCK13757.1| ATP-dependent RNA helicase RhlE [Cronobacter sakazakii 680]
Length = 467
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 137/416 (32%), Positives = 206/416 (49%), Gaps = 60/416 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF+ LGL ++ A+ ++G +PT IQ+ +IP++L GKD++A A+TG+GKT + LPLL
Sbjct: 2 SFDSLGLSPEILRAIAEQGYNEPTPIQRQAIPVVLSGKDLMASAQTGTGKTAGFTLPLLQ 61
Query: 87 RLF-NESSPKSKLAPAALVLVPTRELCQQV------YSEVMALIELCKGQVQLKVVQLTS 139
RL N+ PK + AL+L PTREL QV YS+ + + L V V +
Sbjct: 62 RLTANQPHPKGRRPVRALILTPTRELAAQVGENVREYSKYLDIRSL----VVFGGVSINP 117
Query: 140 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE 199
M L G D++IATPG + Q+ D +++LVLDEAD +L G+
Sbjct: 118 QM------MKLRGGVDVLIATPGRLLDLEH----QNAVKLDQVEVLVLDEADRMLDMGFI 167
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
D++ + A +P Q LL SAT S D+ L + +LHNP EV + + V Q
Sbjct: 168 HDIRRVLAKLPPKRQNLLFSATFSDDIKSLAEKLLHNPE-----EVEVARRNTASEQVTQ 222
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+ ++ + +L+ L + ++ L+FT T A L L K GI +A ++ Q
Sbjct: 223 H-VHFVDKKRKRELLSYLIGDGNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQ 281
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
+R L +F G L+ATD RG
Sbjct: 282 GARTRALADFKTGGIRVLVATDIA---------------------------------ARG 308
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+D + + V+N+E+P YVHRIGRTGRA TG ++SLV DE K+ +I+ +
Sbjct: 309 LDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLL 364
>gi|170693410|ref|ZP_02884569.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
gi|170141565|gb|EDT09734.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
Length = 510
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 144/413 (34%), Positives = 204/413 (49%), Gaps = 52/413 (12%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF+ LGL LV A+++ G PT IQ +IP +L G D++A A+TG+GKT + LP+L
Sbjct: 2 SFDSLGLSEPLVRAVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 87 RLFN---ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPA 143
RL + +S K A AL+L PTREL QV V A + K LK + +
Sbjct: 62 RLNSMPANTSASGKRAVRALILTPTRELAAQVEESVRAYGKYLK----LKSTVMFGGVGI 117
Query: 144 SDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS-LKILVLDEADLLLSYGYEDDL 202
+ AL DIV+ATPG + L +Q K+ S L+ILVLDEAD +L G+ D+
Sbjct: 118 NPQIGALRSGVDIVVATPG---RLLDH--MQQKTIDLSHLEILVLDEADRMLDMGFIHDI 172
Query: 203 KALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWI 262
K + A +P Q LL SAT S ++ L +L +P ++ + + V K I
Sbjct: 173 KRVLAKLPPKRQNLLFSATFSDEIKTLADNLLDSPALIEVARRNTTAETVAQK------I 226
Query: 263 SCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 322
+RDK +LT L + + L+FT T A RL L K GI + ++ Q++R
Sbjct: 227 HPVDRDKKRELLTHLIKQHNWFQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSAR 286
Query: 323 LHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDF 382
L EF G L+ATD RGID
Sbjct: 287 TRALAEFKDGTLQVLVATDI---------------------------------AARGIDI 313
Query: 383 KNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ V+NF++P YVHRIGRTGRA TG +VSLV DE+++ ++I+ +
Sbjct: 314 DQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLLKDIEKLI 366
>gi|118497423|ref|YP_898473.1| ATP-dependent RNA helicase [Francisella novicida U112]
gi|195536115|ref|ZP_03079122.1| dead/deah box helicase domain protein [Francisella novicida FTE]
gi|118423329|gb|ABK89719.1| ATP-dependent RNA helicase [Francisella novicida U112]
gi|194372592|gb|EDX27303.1| dead/deah box helicase domain protein [Francisella tularensis
subsp. novicida FTE]
Length = 441
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 127/410 (30%), Positives = 209/410 (50%), Gaps = 50/410 (12%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F +L L+ + AL KKG KPT IQ +IP++L+G DV+A A+TG+GKT + LP++ R
Sbjct: 3 FSDLDLNSLICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQR 62
Query: 88 LFNESSPKSKLAPA-ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
L ++ PK++ L+L PTREL Q+ + I++ ++ + + +
Sbjct: 63 LLDQ--PKAQANRIKTLILTPTRELAAQIQEQ----IQIYAANTHIRSAVIFGGVSINPQ 116
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
L +I+IATPG + S ++ DSL VLDEAD +L G+ +DLK +
Sbjct: 117 MMKLRKGVEILIATPGRLLDLYSQNAVK----FDSLNTFVLDEADRMLDMGFINDLKKIH 172
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
++P+ Q L+ SAT SS++ L L+NP ++ DV + + K Q+ + + +
Sbjct: 173 KLLPKKLQTLMFSATFSSEIKNLANEFLNNPQFVS----ADVVNTTVKKITQKIY-TLDK 227
Query: 267 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
+K+ +++L+K + + + L+F+ T + A ++ L GI S+ ++ Q +R L
Sbjct: 228 SNKINALISLIKDQNLH-QVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKAL 286
Query: 327 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 386
+F + + L+ATD RGID +
Sbjct: 287 ADFKSNDINVLVATDIA---------------------------------ARGIDIAQLP 313
Query: 387 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
VIN ++P A YVHRIGRTGRA G ++SLVS DE++ I+ +G
Sbjct: 314 CVINLDLPNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSNIEHLIG 363
>gi|167718732|ref|ZP_02401968.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
DM98]
Length = 409
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 132/416 (31%), Positives = 212/416 (50%), Gaps = 54/416 (12%)
Query: 25 EKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPL 84
+ +F++ GL ++ A+ ++G PT IQ +IP++L G+DV+ A+TG+GKT ++ LP+
Sbjct: 10 DATFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPI 69
Query: 85 LHRLF---NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELC--KGQVQLKVVQLTS 139
+ RL N S+ ++ AL+L PTREL QV + V A + + V V +
Sbjct: 70 IQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNP 129
Query: 140 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE 199
M ++LR + +I+IATPG L V Q + ++ILVLDEAD +L G+
Sbjct: 130 QM--AELRRGV----EILIATPG----RLLDHVQQKTANLGQVQILVLDEADRMLDMGFL 179
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
DL+ + ++P+ Q LL SAT S ++ KL L NP + + + V Q
Sbjct: 180 PDLQRILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEV-----ARSNAAASTVTQ 234
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+E DK ++ L++ + K+ ++F N+ A RL +E+ GI +A ++ + Q
Sbjct: 235 IVYDVAEGDKQAAVVKLIR-DRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQ 293
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
+ R+ L+ F G + L+ATD RG
Sbjct: 294 SERMQALDAFKRGEIEALVATDVA---------------------------------ARG 320
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+D + VINF++P NA YVHRIGRTGRA +G ++SL SP+E K +I+ +
Sbjct: 321 LDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLADIEKLI 376
>gi|298711460|emb|CBJ32599.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 848
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 136/430 (31%), Positives = 218/430 (50%), Gaps = 56/430 (13%)
Query: 10 KEVKQAEEEEAEAEEEK-SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVA 68
K K E +E E+ K SFE LG+ L A + G T IQ+ ++PL EGKDV+
Sbjct: 389 KRPKGPEADEPPPEDIKASFESLGVTGPLCEAAAQLGWTHATEIQRQALPLAFEGKDVIG 448
Query: 69 RAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKG 128
A+TGSGKT A+ LP+L L +P+ A+++ PTREL Q+ +EVM + + G
Sbjct: 449 LAETGSGKTGAFALPILQALLE--NPQRLF---AVIMAPTRELAFQI-NEVMEALGVGIG 502
Query: 129 QVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVL 187
LK V + + ALA P +VIATPG + L +K FS + K LVL
Sbjct: 503 ---LKTVCIVGGIDMFQQSVALALKPHVVIATPGRLVDHLEN----TKGFSLRTAKYLVL 555
Query: 188 DEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGD 247
DEAD +L +E+++ + +V+PR + L SAT +S V KL++ L NP + +
Sbjct: 556 DEADRMLGMDFEEEINKVLSVLPRERRTFLFSATMTSKVAKLQRASLKNPARV------E 609
Query: 248 VKDEV-IPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKF 306
V ++ PK + Q ++ + K Y+ +L E + ++F +T + A R+ L L
Sbjct: 610 VANKFSTPKTLVQQYLFIPAKHKDCYLAYVLN-EFAGQSTIVFVSTCNNAQRVALLLRNL 668
Query: 307 GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHP 366
G ++ L+ ++ Q RL L +F +G + LIATD
Sbjct: 669 GFQAVCLHGQMGQPKRLGALGKFKSGQRNVLIATDVAS---------------------- 706
Query: 367 KAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMK 426
RG+D +V V+N E+P + Y+HR+GRT RA G S++ V+ +++
Sbjct: 707 -----------RGLDIPSVDLVVNMEIPSHGKDYIHRVGRTARAGRAGRSIAFVTQYDVE 755
Query: 427 IFEEIKSFVG 436
+++ +++ +G
Sbjct: 756 VYQRMEALIG 765
>gi|395227497|ref|ZP_10405823.1| ATP-dependent RNA helicase RhlE [Citrobacter sp. A1]
gi|421844472|ref|ZP_16277630.1| ATP-dependent RNA helicase RhlE [Citrobacter freundii ATCC 8090 =
MTCC 1658]
gi|424728799|ref|ZP_18157404.1| atp-dependent rna helicase [Citrobacter sp. L17]
gi|394718825|gb|EJF24446.1| ATP-dependent RNA helicase RhlE [Citrobacter sp. A1]
gi|411774627|gb|EKS58117.1| ATP-dependent RNA helicase RhlE [Citrobacter freundii ATCC 8090 =
MTCC 1658]
gi|422896670|gb|EKU36452.1| atp-dependent rna helicase [Citrobacter sp. L17]
Length = 448
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 137/416 (32%), Positives = 209/416 (50%), Gaps = 60/416 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLL- 85
SF+ LGL+ ++ A+ ++G ++PT IQQ +IP +LEG+D++A A+TG+GKT + LPLL
Sbjct: 2 SFDSLGLNPEILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 86 HRLFNESSPKSKLAPAALVLVPTRELCQQV------YSEVMALIELCKGQVQLKVVQLTS 139
H + N+ KS+ AL+L PTREL Q+ YS+ + + L V V +
Sbjct: 62 HLITNQPHGKSRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSL----VVFGGVSINP 117
Query: 140 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE 199
M L G D++IATPG + Q+ D ++ILVLDEAD +L G+
Sbjct: 118 QM------MKLRGGVDVLIATPGRLLDLEH----QNAVKLDQVEILVLDEADRMLDMGFI 167
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
D++ + A +P Q LL SAT S D+ L + +LHNP + + ++V Q
Sbjct: 168 HDIRRVLAKLPAKRQNLLFSATFSDDIKSLAEKLLHNPLEIEVARRNTASEQV----TQH 223
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+R + L L+ + + ++ L+FT T A L L K GI+SA ++ Q
Sbjct: 224 VHFVDKKRKREL--LSQMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQ 281
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
+R L +F +G L+ATD RG
Sbjct: 282 GARTRALADFKSGDIRVLVATDIA---------------------------------ARG 308
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+D + + V+N+E+P YVHRIGRTGRA TG ++SLV DE K+ +I+ +
Sbjct: 309 LDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLL 364
>gi|237730773|ref|ZP_04561254.1| ATP-dependent RNA helicase RhlE [Citrobacter sp. 30_2]
gi|226906312|gb|EEH92230.1| ATP-dependent RNA helicase RhlE [Citrobacter sp. 30_2]
Length = 448
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 137/416 (32%), Positives = 209/416 (50%), Gaps = 60/416 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLL- 85
SF+ LGL+ ++ A+ ++G ++PT IQQ +IP +LEG+D++A A+TG+GKT + LPLL
Sbjct: 2 SFDSLGLNPEILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 86 HRLFNESSPKSKLAPAALVLVPTRELCQQV------YSEVMALIELCKGQVQLKVVQLTS 139
H + N+ KS+ AL+L PTREL Q+ YS+ + + L V V +
Sbjct: 62 HLITNQPHGKSRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSL----VVFGGVSINP 117
Query: 140 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE 199
M L G D++IATPG + Q+ D ++ILVLDEAD +L G+
Sbjct: 118 QM------MKLRGGVDVLIATPGRLLDLEH----QNAVKLDQVEILVLDEADRMLDMGFI 167
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
D++ + A +P Q LL SAT S D+ L + +LHNP + + ++V Q
Sbjct: 168 HDIRRVLAKLPTKRQNLLFSATFSDDIKSLAEKLLHNPLEIEVARRNTASEQV----TQH 223
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+R + L L+ + + ++ L+FT T A L L K GI+SA ++ Q
Sbjct: 224 VHFVDKKRKREL--LSQMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQ 281
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
+R L +F +G L+ATD RG
Sbjct: 282 GARTRALADFKSGDIRVLVATDIA---------------------------------ARG 308
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+D + + V+N+E+P YVHRIGRTGRA TG ++SLV DE K+ +I+ +
Sbjct: 309 LDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLL 364
>gi|449516409|ref|XP_004165239.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase
28-like [Cucumis sativus]
Length = 733
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 138/413 (33%), Positives = 191/413 (46%), Gaps = 51/413 (12%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF EL L L+ A G KPT IQ A IPL L G+D+ A TGSGKT A+ LP L
Sbjct: 136 SFMELNLSRPLIRACEALGYAKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPTLE 195
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
RL PK A L+L P REL QV+S + L + ++ + + +
Sbjct: 196 RLLYR--PKRDRAIRVLILTPARELAIQVHSMIEKLAQF----TDIRCCLIVGGLSRKEQ 249
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKAL 205
AAL PD+V+ATPG M L S S D L +L+LDEAD LL G+ +++ L
Sbjct: 250 EAALRSMPDVVVATPGRMIDHLR----NSMSVDLDDLAVLILDEADRLLELGFSAEIREL 305
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
+ P+ Q +L SAT + +V++L KL L P L+ PK + + +
Sbjct: 306 VRLCPKRRQTMLFSATMTEEVNELIKLSLTKPLRLSADPATKR-----PKTLTEEVVRLR 360
Query: 266 ERDKLLYILTLLKL--ELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
++ LL L + K ++F+ T A RLK+ G K+A L+ L Q RL
Sbjct: 361 RMREVNQEAVLLSLCSKTFTSKVIVFSGTKQAAHRLKILFGLAGFKAAELHGNLTQVQRL 420
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
LE F D+LIATD RG+D
Sbjct: 421 DALELFRKQQVDFLIATD---------------------------------VAARGLDII 447
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
V TVINF P++ YVHR+GRT RA G +V+ V+ ++ + + I G
Sbjct: 448 GVETVINFACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAG 500
>gi|298368676|ref|ZP_06979994.1| ATP-dependent RNA helicase RhlE [Neisseria sp. oral taxon 014 str.
F0314]
gi|298282679|gb|EFI24166.1| ATP-dependent RNA helicase RhlE [Neisseria sp. oral taxon 014 str.
F0314]
Length = 443
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 131/412 (31%), Positives = 200/412 (48%), Gaps = 55/412 (13%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F +L LD ++ A+ +G + PT IQ +IP LEG+D++A A+TGSGKT A+LLP L R
Sbjct: 5 FADLNLDKNILSAVRSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
L S K P ALVL PTREL QV +A K + V +
Sbjct: 65 LTKRSEKPGK-GPRALVLTPTRELAAQVEKNALA---YAKNMRWFRTVSIVGGASFGYQT 120
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
AL+ P D+++ATPG + + +G K D L++L+LDEAD +L G+ DD++ +
Sbjct: 121 RALSKPVDLIVATPGRLMDLMQSG----KVDFDRLEVLILDEADRMLDMGFIDDIETIVE 176
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE- 266
P Q LL SAT V KL + + NP I+ + V D +++ + C +
Sbjct: 177 ATPSDRQTLLFSATWDGAVGKLARKLTKNPEIIEVERVDD------QGKIEEQLLYCDDM 230
Query: 267 --RDKLL-YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+++LL +IL ++ + +IFT+T M + L + G + L+ ++PQ R
Sbjct: 231 RHKNRLLDHILRDANID----QCVIFTSTKAMTEVIADDLYEKGFAANCLHGDMPQGWRN 286
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
L + G L+ATD RGID
Sbjct: 287 RTLMDLRKGRCKILVATD---------------------------------VAARGIDVP 313
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ VIN+++P+ A YVHRIGRTGRA TG +++ +E +I+ ++
Sbjct: 314 TITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYI 365
>gi|167737747|ref|ZP_02410521.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
14]
Length = 409
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 132/416 (31%), Positives = 212/416 (50%), Gaps = 54/416 (12%)
Query: 25 EKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPL 84
+ +F++ GL ++ A+ ++G PT IQ +IP++L G+DV+ A+TG+GKT ++ LP+
Sbjct: 10 DATFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPI 69
Query: 85 LHRLF---NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELC--KGQVQLKVVQLTS 139
+ RL N S+ ++ AL+L PTREL QV + V A + + V V +
Sbjct: 70 IQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNP 129
Query: 140 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE 199
M ++LR + +I+IATPG L V Q + ++ILVLDEAD +L G+
Sbjct: 130 QM--AELRRGV----EILIATPG----RLLDHVQQKTANLGQVQILVLDEADRMLDMGFL 179
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
DL+ + ++P+ Q LL SAT S ++ KL L NP + + + V Q
Sbjct: 180 PDLQRILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQAIEV-----ARSNAAASTVTQ 234
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+E DK ++ L++ + K+ ++F N+ A RL +E+ GI +A ++ + Q
Sbjct: 235 IVYDVAEGDKQAAVVKLIR-DRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQ 293
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
+ R+ L+ F G + L+ATD RG
Sbjct: 294 SERMQALDAFKRGEIEALVATDVA---------------------------------ARG 320
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+D + VINF++P NA YVHRIGRTGRA +G ++SL SP+E K +I+ +
Sbjct: 321 LDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLADIEKLI 376
>gi|429216159|ref|ZP_19207318.1| putative ATP-dependent RNA helicase [Pseudomonas sp. M1]
gi|428153812|gb|EKX00366.1| putative ATP-dependent RNA helicase [Pseudomonas sp. M1]
Length = 441
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 136/408 (33%), Positives = 198/408 (48%), Gaps = 48/408 (11%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F + L RL+ AL +PT +Q A+IP LEG+D+ A+TGSGKT A++LPLLHR
Sbjct: 2 FAQFALHERLLKALETLSFTEPTAVQAAAIPKALEGRDLRVTAQTGSGKTAAFVLPLLHR 61
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
L +E PK+ AL+L+PTREL QQ EV + +K +T
Sbjct: 62 LLSEEKPKT--GARALILLPTRELAQQTLKEVERFAQFTF----IKACLITGGEDFKVQG 115
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
A L P+I+I TPG + + + G L D +++LVLDEAD +L G+ +D+ L+
Sbjct: 116 ARLRKNPEIIIGTPGRLNEQFNAGNL---PLGD-VEVLVLDEADRMLDMGFAEDVLKLAG 171
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 267
P Q LL SAT+ S + + + +L P L L V ++ +++ QQ +
Sbjct: 172 ACPAQRQTLLFSATAGSGLHAMVEQVLREPESLQLNRVSELNEDI----AQQVILVDDNA 227
Query: 268 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 327
K + LL+ E KA++FTNT A RL L G K +L+ E Q R +E
Sbjct: 228 HKEAILHWLLENETFD-KAIVFTNTRVQADRLTGRLIAAGHKVFVLHGEKDQKDRKLAIE 286
Query: 328 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 387
G L+ATD RG+D + +
Sbjct: 287 RLKQGAVKILVATDVA---------------------------------ARGLDVEGLDL 313
Query: 388 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
V+NF+MP+ YVHRIGRTGRA G ++SLVS + + I+ ++
Sbjct: 314 VLNFDMPRRGDEYVHRIGRTGRAGEAGLAISLVSHSDWNLMSSIERYL 361
>gi|149908418|ref|ZP_01897081.1| putative ATP-dependent RNA helicase RhlE [Moritella sp. PE36]
gi|149808581|gb|EDM68516.1| putative ATP-dependent RNA helicase RhlE [Moritella sp. PE36]
Length = 449
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 132/400 (33%), Positives = 201/400 (50%), Gaps = 48/400 (12%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF +LGL ++ A+ +KG P+ IQ +IP +L G+DV+A A+TG+GKT + LP+L
Sbjct: 2 SFTDLGLSAPILKAVAEKGYDTPSAIQAQAIPAVLSGRDVMAAAQTGTGKTAGFTLPILE 61
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
L P++ A L+L PTREL Q+ IE+ ++L + + +
Sbjct: 62 ILSQGPRPRANQA-RTLILTPTRELAAQIAEN----IEVYSKHLRLTSTVVFGGVKINPQ 116
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
L DI++ATPG + + ++ L+ILVLDEAD +L G+ D++ +
Sbjct: 117 MTRLRRGVDILVATPGRLLDLYNQNAIRFH----QLEILVLDEADRMLDMGFLRDIRKIL 172
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
AV+P+ Q LL SAT S D+ +L + ++++P E+ K+V+Q W+ +
Sbjct: 173 AVLPQKRQNLLFSATFSDDIRQLARGLINDPV-----EISVTPRNAAAKSVEQ-WMHPVD 226
Query: 267 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
+ K +LT L E K+ L+FT T A +L LE+ GI +A ++ Q++R L
Sbjct: 227 KKKKALLLTHLIKENDWKQVLVFTKTKHGANKLTKHLEEQGINAAAIHGNKSQSARTKAL 286
Query: 327 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 386
F +G LIATD RGID +
Sbjct: 287 ANFKSGEVRALIATDI---------------------------------AARGIDIVQLP 313
Query: 387 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMK 426
V+NF++P YVHRIGRTGRA + G ++SLV DEMK
Sbjct: 314 QVVNFDLPNVPEDYVHRIGRTGRAGSEGTAISLVCHDEMK 353
>gi|171057308|ref|YP_001789657.1| DEAD/DEAH box helicase [Leptothrix cholodnii SP-6]
gi|170774753|gb|ACB32892.1| DEAD/DEAH box helicase domain protein [Leptothrix cholodnii SP-6]
Length = 479
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 132/412 (32%), Positives = 215/412 (52%), Gaps = 52/412 (12%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F+ L LD +L+ A+ G T IQ +IP++L+G+DV+ A+TG+GKT A+ LPLL +
Sbjct: 17 FDSLPLDPKLLRAIVDAGYLTMTPIQAKAIPIVLDGRDVMGAAQTGTGKTAAFSLPLLQK 76
Query: 88 LF---NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
+ N S+ ++ ALVL PTREL QV + V QL+V + + +
Sbjct: 77 MLRHENASASPARHPVRALVLAPTRELADQVANNVKTYAR----HSQLRVTCVFGGIDMA 132
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLK 203
A L +++IATPG + +Q+K+ + ++ +VLDEAD +L G+ DL+
Sbjct: 133 PQTAELKRGVEVLIATPGRL-----LDHIQAKNCQLNQVEYVVLDEADRMLDIGFLPDLQ 187
Query: 204 ALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWIS 263
+ + +P+ Q LL SAT S ++ KL + L +P ++ + + NV+Q + S
Sbjct: 188 RILSYLPKTRQTLLFSATFSPEIKKLAQSYLQDPLLVEV-----ARPNATATNVEQRFYS 242
Query: 264 CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
++ DK +L +L+ E +A++F N+ A RL E+ G++++ L+ + Q+ RL
Sbjct: 243 VTDDDKRRTVLHILR-ERSITQAIVFVNSKLGAARLARSFERDGLRTSALHGDKSQDERL 301
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
L+ F G D L+ATD RG+D
Sbjct: 302 KALDAFKRGEVDVLVATD---------------------------------VAARGLDIA 328
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
++ V NF++P NA YVHRIGRTGRA +G +VSLVS D+ ++ +I+ +
Sbjct: 329 DLPAVFNFDIPFNAEDYVHRIGRTGRAGASGLAVSLVSHDDNRLVSDIEQLI 380
>gi|156934713|ref|YP_001438629.1| ATP-dependent RNA helicase RhlE [Cronobacter sakazakii ATCC
BAA-894]
gi|156532967|gb|ABU77793.1| hypothetical protein ESA_02548 [Cronobacter sakazakii ATCC BAA-894]
Length = 474
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 137/416 (32%), Positives = 206/416 (49%), Gaps = 60/416 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF+ LGL ++ A+ ++G +PT IQ+ +IP++L GKD++A A+TG+GKT + LPLL
Sbjct: 2 SFDSLGLSPEILRAIAEQGYNEPTPIQRQAIPVVLSGKDLMASAQTGTGKTAGFTLPLLQ 61
Query: 87 RLF-NESSPKSKLAPAALVLVPTRELCQQV------YSEVMALIELCKGQVQLKVVQLTS 139
RL N+ PK + AL+L PTREL QV YS+ + + L V V +
Sbjct: 62 RLTANQPHPKGRRPVRALILTPTRELAAQVGENVREYSKYLDIRSL----VVFGGVSINP 117
Query: 140 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE 199
M L G D++IATPG + Q+ D +++LVLDEAD +L G+
Sbjct: 118 QM------MKLRGGVDVLIATPGRLLDLEH----QNAVKLDQVEVLVLDEADRMLDMGFI 167
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
D++ + A +P Q LL SAT S D+ L + +LHNP EV + + V Q
Sbjct: 168 HDIRRVLAKLPPKRQNLLFSATFSDDIKSLAEKLLHNPE-----EVEVARRNTASEQVTQ 222
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+ ++ + +L+ L + ++ L+FT T A L L K GI +A ++ Q
Sbjct: 223 H-VHFVDKKRKRELLSYLIGDGNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQ 281
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
+R L +F G L+ATD RG
Sbjct: 282 GARTRALADFKTGGIRVLVATDI---------------------------------AARG 308
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+D + + V+N+E+P YVHRIGRTGRA TG ++SLV DE K+ +I+ +
Sbjct: 309 LDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLL 364
>gi|449460106|ref|XP_004147787.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 28-like [Cucumis
sativus]
Length = 733
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 138/413 (33%), Positives = 191/413 (46%), Gaps = 51/413 (12%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF EL L L+ A G KPT IQ A IPL L G+D+ A TGSGKT A+ LP L
Sbjct: 136 SFMELNLSRPLIRACEALGYAKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPTLE 195
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
RL PK A L+L P REL QV+S + L + ++ + + +
Sbjct: 196 RLLYR--PKRDRAIRVLILTPARELAIQVHSMIEKLAQF----TDIRCCLIVGGLSRKEQ 249
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKAL 205
AAL PD+V+ATPG M L S S D L +L+LDEAD LL G+ +++ L
Sbjct: 250 EAALRSMPDVVVATPGRMIDHLRN----SMSVDLDDLAVLILDEADRLLELGFSAEIREL 305
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
+ P+ Q +L SAT + +V++L KL L P L+ PK + + +
Sbjct: 306 VRLCPKRRQTMLFSATMTEEVNELIKLSLTKPLRLSADPATKR-----PKTLTEEVVRLR 360
Query: 266 ERDKLLYILTLLKL--ELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
++ LL L + K ++F+ T A RLK+ G K+A L+ L Q RL
Sbjct: 361 RMREVNQEAVLLSLCSKTFTSKVIVFSGTKQAAHRLKILFGLAGFKAAELHGNLTQVQRL 420
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
LE F D+LIATD RG+D
Sbjct: 421 DALELFRKQQVDFLIATD---------------------------------VAARGLDII 447
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
V TVINF P++ YVHR+GRT RA G +V+ V+ ++ + + I G
Sbjct: 448 GVETVINFACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAG 500
>gi|154284444|ref|XP_001543017.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces capsulatus NAm1]
gi|160358658|sp|A6QRQ7.1|RRP3_AJECN RecName: Full=ATP-dependent rRNA helicase RRP3
gi|150406658|gb|EDN02199.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces capsulatus NAm1]
Length = 485
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 139/432 (32%), Positives = 217/432 (50%), Gaps = 55/432 (12%)
Query: 11 EVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARA 70
E Q + EEA KSF++LG+ L A G + PT IQ SIPL L+G+D++ A
Sbjct: 47 ESPQVQREEAVT---KSFKDLGIIDSLCEACEALGYKSPTPIQAESIPLALQGRDLIGLA 103
Query: 71 KTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQV 130
+TGSGKT A+ LP+L L N+ P+S L+L PTREL Q+ AL L +
Sbjct: 104 ETGSGKTAAFALPILQALMNK--PQSLF---GLILAPTRELACQISEAFEALGSL----I 154
Query: 131 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDE 189
++ + M +L P I++ATPG + L +K FS SLK LV+DE
Sbjct: 155 SVRCAVIVGGMDMVSQAISLGKKPHIIVATPGRLLDHLEN----TKGFSLRSLKYLVMDE 210
Query: 190 ADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVK 249
AD LL + L + V+PR + L SAT SS V+ L++ L NP ++ + K
Sbjct: 211 ADRLLDLDFGPILDKILKVLPRERRTYLFSATMSSKVESLQRASLSNPLRVS---ISSNK 267
Query: 250 DEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIK 309
+ + +Q + + K +Y++ LL E + A++FT T++ RL + L G
Sbjct: 268 YQTVATLLQSYLF-IPHKYKDIYLVYLLN-EYAGQSAIVFTRTVNETQRLAILLRALGFG 325
Query: 310 SAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAK 369
S L+ +L Q+SRL L +F + D L+ATD
Sbjct: 326 SIPLHGQLSQSSRLGALSKFRSRSRDILVATDVA-------------------------- 359
Query: 370 LDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFE 429
RG+D +V V+NF++P ++ Y+HR+GRT RA +G + S+V+ +++++
Sbjct: 360 -------ARGLDIPSVDVVLNFDLPSDSKTYIHRVGRTARAGKSGHAFSIVTQYDIEVWL 412
Query: 430 EIKSFVGDDENE 441
I++ +G +E
Sbjct: 413 RIENALGKKLDE 424
>gi|365105460|ref|ZP_09334707.1| ATP-dependent RNA helicase rhlE [Citrobacter freundii 4_7_47CFAA]
gi|363643475|gb|EHL82793.1| ATP-dependent RNA helicase rhlE [Citrobacter freundii 4_7_47CFAA]
Length = 448
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 137/416 (32%), Positives = 209/416 (50%), Gaps = 60/416 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLL- 85
SF+ LGL+ ++ A+ ++G ++PT IQQ +IP +LEG+D++A A+TG+GKT + LPLL
Sbjct: 2 SFDSLGLNPEILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 86 HRLFNESSPKSKLAPAALVLVPTRELCQQV------YSEVMALIELCKGQVQLKVVQLTS 139
H + N+ KS+ AL+L PTREL Q+ YS+ + + L V V +
Sbjct: 62 HLITNQPHGKSRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSL----VVFGGVSINP 117
Query: 140 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE 199
M L G D++IATPG + Q+ D ++ILVLDEAD +L G+
Sbjct: 118 QM------MKLRGGVDVLIATPGRLLDLEH----QNAVKLDQVEILVLDEADRMLDMGFI 167
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
D++ + A +P Q LL SAT S D+ L + +LHNP + + ++V Q
Sbjct: 168 HDIRRVLAKLPAKRQNLLFSATFSDDIKSLAEKLLHNPLEIEVARRNTASEQV----TQH 223
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+R + L L+ + + ++ L+FT T A L L K GI+SA ++ Q
Sbjct: 224 VHFVDKKRKREL--LSQMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQ 281
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
+R L +F +G L+ATD RG
Sbjct: 282 GARTRALADFKSGDIRVLVATDIA---------------------------------ARG 308
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+D + + V+N+E+P YVHRIGRTGRA TG ++SLV DE K+ +I+ +
Sbjct: 309 LDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLL 364
>gi|334348319|ref|XP_001371236.2| PREDICTED: probable ATP-dependent RNA helicase DDX47-like
[Monodelphis domestica]
Length = 459
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 127/423 (30%), Positives = 218/423 (51%), Gaps = 53/423 (12%)
Query: 15 AEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGS 74
++ +E E E K+F++LG+ L A ++ G + PT IQ +IP+ L+G+D++ A+TGS
Sbjct: 14 SDPQETEVPETKTFKDLGVTDVLCDACDQLGWKTPTKIQIEAIPMALDGRDIIGLAETGS 73
Query: 75 GKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKV 134
GKT A+ LP+L+ L + +P+ ALVL PTREL Q+ + AL + ++
Sbjct: 74 GKTGAFALPILNALLD--TPQRFF---ALVLTPTRELAFQISEQFEAL----GSSIGVEC 124
Query: 135 VQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLL 193
+ + + ALA P ++IATPG + L +K F+ +LK LV+DEAD +
Sbjct: 125 AVIVGGIDSMSQSLALAKKPHVIIATPGRLIDHLE----NTKGFNLRALKYLVMDEADRI 180
Query: 194 LSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVI 253
L+ +E ++ + +IPR + L SAT + V KL++ L NP + K + +
Sbjct: 181 LNMDFETEVDKILKLIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTV 236
Query: 254 PKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAIL 313
K +QQ+++ + K Y++ +L EL ++F +T + R L L G + L
Sbjct: 237 EK-LQQYYLFIPSKFKDSYLVYILN-ELAGNSFMVFCSTCNNTQRTALLLRNLGFTAIPL 294
Query: 314 NAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSE 373
+ ++ QN RL L +F A L+ATD
Sbjct: 295 HGQMSQNKRLGSLNKFKAKARSILLATDVAS----------------------------- 325
Query: 374 FGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKS 433
RG+D +V V+NF++P ++ Y+HR+GRT RA +G S++ V+ ++++++ I+
Sbjct: 326 ----RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELYQRIEH 381
Query: 434 FVG 436
+G
Sbjct: 382 LIG 384
>gi|255034017|ref|YP_003084638.1| DEAD/DEAH box helicase [Dyadobacter fermentans DSM 18053]
gi|254946773|gb|ACT91473.1| DEAD/DEAH box helicase domain protein [Dyadobacter fermentans DSM
18053]
Length = 590
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 138/468 (29%), Positives = 241/468 (51%), Gaps = 61/468 (13%)
Query: 22 AEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYL 81
E ++FEELGL+ ++ AL + G +KP+ IQ IP +L+G DV+ +A+TG+GKT A+
Sbjct: 3 TETFQTFEELGLNENILKALQEMGFEKPSPIQAQGIPAVLQGSDVIGQAQTGTGKTAAFG 62
Query: 82 LPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSM 141
+P+L R+ S+ A AL+L PTREL QV E+ L + +G V+++ + S+
Sbjct: 63 IPVLERIDTSSN-----AVQALILCPTRELAVQVSEELGRLSKFMRG-VRIEAIYGGDSI 116
Query: 142 PASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDD 201
+R+ G IV+ TPG + + L+ D ++++VLDEAD +L G+ +D
Sbjct: 117 D-RQIRSLKKG-VHIVVGTPGRVMDHMERRTLK----FDEVRMMVLDEADEMLDMGFRED 170
Query: 202 LKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW 261
++++ A +P Q +L SAT S + + K L++P ++ + V++E+ +N++Q +
Sbjct: 171 IESILADMPEDRQTILFSATMSKPIMSITKRFLNDPTLIKV-----VRNELTNQNIEQVY 225
Query: 262 ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 321
+ K+ + L+ + + K L+F NT + L+ G S ++ +L Q
Sbjct: 226 FEVKPQAKVEVMTRLIDMHHI-KSLLVFCNTKRKVDEIVEDLQLRGYASEGIHGDLRQQQ 284
Query: 322 RLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGID 381
R +++ +F AG+ L+ATD RGID
Sbjct: 285 RSNVMSKFKAGVTTILVATDVA---------------------------------ARGID 311
Query: 382 FKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENE 441
+ VIN+++P + YVHRIGRTGRA +G + SLV+ DE + I+S+
Sbjct: 312 VSGLDGVINYDIPMDEEYYVHRIGRTGRAGMSGKAFSLVARDEKYRLKSIESYT--KVKI 369
Query: 442 DSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEIL 489
+ +I F + V R+ E+++ S ++ES ++L N++L
Sbjct: 370 EKGVIPSFEDIV--GVRKARF-VENISNS-----IKESNDEELYNDVL 409
>gi|421538315|ref|ZP_15984492.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 93003]
gi|402317134|gb|EJU52673.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 93003]
Length = 462
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 129/412 (31%), Positives = 201/412 (48%), Gaps = 55/412 (13%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F +L LD ++ A++ +G + PT IQ +IP LEG+D++A A+TGSGKT A+LLP L R
Sbjct: 5 FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
L S K P ALVL PTREL QV +A K + V +
Sbjct: 65 LTKRSEKPGK-GPRALVLTPTRELAAQVEKNALA---YAKNMRWFRTVSIVGGASFGYQT 120
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
AL+ P D+++ATPG + + +G K + L++L+LDEAD +L G+ DD++ +
Sbjct: 121 RALSKPVDLIVATPGRLMDLMQSG----KVDFERLEVLILDEADRMLDMGFIDDIETIVE 176
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE- 266
P Q LL SAT V KL + + +P I+ + V D +++ + C +
Sbjct: 177 ATPSDRQTLLFSATWDGAVGKLARKLTKDPEIIEVERVDD------QGKIEEQLLYCDDM 230
Query: 267 --RDKLL-YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+++LL +IL ++ + +IFT+T M + L + G + L+ ++PQ R
Sbjct: 231 RHKNRLLDHILRDANID----QCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRN 286
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
L + G L+ATD RGID
Sbjct: 287 RTLMDLRKGRCKILVATDV---------------------------------AARGIDVP 313
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ VIN+++P+ A YVHRIGRTGRA TG +++ +E +I+ ++
Sbjct: 314 TITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYI 365
>gi|284007123|emb|CBA72399.1| ATP-dependent RNA helicase [Arsenophonus nasoniae]
Length = 438
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 143/417 (34%), Positives = 207/417 (49%), Gaps = 64/417 (15%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F LGL ++ A+ + G +KPT IQQ +IP IL GKD++A A+TG+GKT ++LP+L
Sbjct: 9 FNSLGLSAEILSAIKEAGYEKPTSIQQQAIPAILAGKDLLASAQTGTGKTAGFVLPILQH 68
Query: 88 LFNESSP---KSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
L +P K K AL+L PTREL QV V + + LK + + + +
Sbjct: 69 L--SQTPVVVKGKKPVRALILAPTRELAAQVGQNVRNYSQFLR----LKSLVVFGGVSIN 122
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS-LKILVLDEADLLLSYGYEDDLK 203
L G DI++ATPG + ++Q + S S ++ILVLDEAD +L G+ D++
Sbjct: 123 PQMMKLRGGVDILVATPGRL-----LDLVQQNAVSLSQVEILVLDEADRMLDMGFIHDIR 177
Query: 204 ALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQ 258
+ +P Q LL SAT S+ + +L +LHNP IL EV P+N V+
Sbjct: 178 RILDKLPTKRQNLLFSATFSNQIKQLANSLLHNPTIL----------EVAPRNSASQQVK 227
Query: 259 QFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELP 318
Q +R K + L+ E Q + L+FT T A RL L K GIK+ ++
Sbjct: 228 QLIHFVDKRRKAELLSYLIGSENWQ-QVLVFTRTKYGANRLTEHLIKDGIKAMAIHGNKS 286
Query: 319 QNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVR 378
Q +R L +F +G L+ATD R
Sbjct: 287 QGARTRALADFKSGAIRVLVATDIA---------------------------------AR 313
Query: 379 GIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
G+D + + V+N+E+P A YVHRIGRTGRA TG +VSLV+ DE + I+ +
Sbjct: 314 GLDIEQLPYVVNYELPNVAEDYVHRIGRTGRAAATGLAVSLVAIDEQSLLTAIERLL 370
>gi|433536984|ref|ZP_20493489.1| helicase domain protein [Neisseria meningitidis 77221]
gi|432273920|gb|ELL29017.1| helicase domain protein [Neisseria meningitidis 77221]
Length = 462
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 129/412 (31%), Positives = 201/412 (48%), Gaps = 55/412 (13%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F +L LD ++ A++ +G + PT IQ +IP LEG+D++A A+TGSGKT A+LLP L R
Sbjct: 5 FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
L S K P ALVL PTREL QV +A K + V +
Sbjct: 65 LTKRSEKPGK-GPRALVLTPTRELAAQVEKNALA---YAKNMRWFRTVSIVGGASFGYQT 120
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
AL+ P D+++ATPG + + +G K + L++L+LDEAD +L G+ DD++ +
Sbjct: 121 RALSKPVDLIVATPGRLMDLMQSG----KVDFERLEVLILDEADRMLDMGFIDDIETIVE 176
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE- 266
P Q LL SAT V KL + + +P I+ + V D +++ + C +
Sbjct: 177 ATPSDRQTLLFSATWDGAVGKLARKLTKDPEIIEVERVDD------QGKIEEQLLYCDDM 230
Query: 267 --RDKLL-YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+++LL +IL ++ + +IFT+T M + L + G + L+ ++PQ R
Sbjct: 231 RHKNRLLDHILRDANID----QCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRN 286
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
L + G L+ATD RGID
Sbjct: 287 RTLMDLRKGRCKILVATDV---------------------------------AARGIDVP 313
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ VIN+++P+ A YVHRIGRTGRA TG +++ +E +I+ ++
Sbjct: 314 TITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYI 365
>gi|346318712|gb|EGX88314.1| ATP-dependent rRNA helicase RRP3 [Cordyceps militaris CM01]
Length = 480
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 135/444 (30%), Positives = 221/444 (49%), Gaps = 60/444 (13%)
Query: 6 EIPSKEVKQAEEEEAEAEEEKSFEEL-------GLDLRLVHALNKKGIQKPTLIQQASIP 58
E + E QA+++E EAE K+F+EL G+ L A G + PT IQ SIP
Sbjct: 32 ESATVEAAQADDKE-EAEPPKTFKELANTPHHQGIVDALCEACETLGYKTPTGIQAQSIP 90
Query: 59 LILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSE 118
+ L+G+DV+ A+TGSGKT A+ LP+L L ++ P LVL PTREL Q+
Sbjct: 91 VALQGRDVIGLAETGSGKTAAFALPVLQALLDKPQPL-----FGLVLAPTRELAAQIGQT 145
Query: 119 VMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSF 178
AL L + L+ + + AL P +++ATPG + L ++K F
Sbjct: 146 FEALGAL----ISLRCAVIVGGLDMVPQAVALGKKPHVIVATPGRLVDHLE----KTKGF 197
Query: 179 S-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNP 237
S +LK LVLDEAD LL + + ++ L IPR + L SAT SS V+ L++ L +P
Sbjct: 198 SLRTLKYLVLDEADRLLDMDFGESIEKLLKFIPRERRTYLFSATMSSSVESLQRASLRDP 257
Query: 238 YILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAF 297
++ V K + + ++Q ++ + K Y++ ++ E K ++FT T+
Sbjct: 258 VRVS---VSASKYQTV-STLKQHYVFIPHKRKDTYLIHIIN-EFAGKSCIVFTRTVYETQ 312
Query: 298 RLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHV 357
R + L G + L+ +L Q++RL L +F G + L+ATD
Sbjct: 313 RCAVLLRTLGFGAIPLHGQLSQSARLGALNKFRGGTREILVATDV--------------- 357
Query: 358 DSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASV 417
RG+D V ++N+++P ++ Y+HR+GRT RA +G ++
Sbjct: 358 ------------------AARGLDIPKVDVILNYDIPSDSKTYIHRVGRTARAGKSGVAI 399
Query: 418 SLVSPDEMKIFEEIKSFVGDDENE 441
S+V+ ++++F I++ +G +E
Sbjct: 400 SIVTQFDIELFTRIEAALGKKLDE 423
>gi|307720922|ref|YP_003892062.1| DEAD/DEAH box helicase [Sulfurimonas autotrophica DSM 16294]
gi|306979015|gb|ADN09050.1| DEAD/DEAH box helicase domain protein [Sulfurimonas autotrophica
DSM 16294]
Length = 417
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 142/419 (33%), Positives = 209/419 (49%), Gaps = 53/419 (12%)
Query: 23 EEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLL 82
++E +F LGL ++ A+ ++G PT IQQ +IP+ILE KD++A A+TG+GKT + L
Sbjct: 2 KKETTFNSLGLSAPILKAIKEQGYNTPTPIQQKAIPVILEKKDILAGAQTGTGKTAGFTL 61
Query: 83 PLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIEL---CKGQVQLKVVQLTS 139
PLL L E K K AL+L PTREL QV E +AL K V V++
Sbjct: 62 PLLELLSREKPTKQKHKIRALILTPTRELAAQV-GESVALYGKHLPFKSTVIFGGVKINP 120
Query: 140 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE 199
+ S+LR DIVIATPG + +S + + ++ L+LDEAD +L G+
Sbjct: 121 QI--SNLRKGT----DIVIATPGRLLDHISQKTIDLR----EVEYLILDEADRMLDMGFI 170
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
+D+K + +IP Q LL SAT S + KL L+ P ++ + + E++ + V
Sbjct: 171 NDIKKILNIIPNQRQTLLFSATYSDAIKKLSNQFLNAPKLIEVAR-ANTSSEIVKQAV-- 227
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+ + + + +L LT L E ++ L+FT T A RL LE GI + ++ Q
Sbjct: 228 YHVDKTRKREL---LTHLINEGKWQQVLVFTRTKHGANRLSGQLESDGITAVAIHGNKSQ 284
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
N+R L +F G L+ATD RG
Sbjct: 285 NARTKALADFKKGDVRVLVATDIA---------------------------------ARG 311
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD 438
ID + VIN+E+P + YVHRIGRTGRA N G ++SLV DE + + I+ + D
Sbjct: 312 IDIDQLPHVINYELPNVSEDYVHRIGRTGRAGNGGEAISLVCVDEDEFLQNIEKLIKKD 370
>gi|449052728|ref|ZP_21732359.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae hvKP1]
gi|448875863|gb|EMB10868.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae hvKP1]
Length = 451
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 138/416 (33%), Positives = 209/416 (50%), Gaps = 60/416 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF+ LGL+ ++ A+ ++G +PT IQQ +IP +L+G+D++A A+TG+GKT + LPLL
Sbjct: 2 SFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 87 RLF-NESSPKSKLAPAALVLVPTRELCQQV------YSEVMALIELCKGQVQLKVVQLTS 139
RL NE K + AL+L PTREL QV YS+ + + L V V +
Sbjct: 62 RLIQNEPHAKGRRPVRALILTPTRELAAQVGENVRDYSKYLNIRSL----VVFGGVSINP 117
Query: 140 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE 199
M L G DI++ATPG + Q+ D ++ILVLDEAD +L G+
Sbjct: 118 QM------MKLRGGVDILVATPGRLLDLEH----QNAVSLDKVEILVLDEADRMLDMGFI 167
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
D++ + A +P Q LL SAT S ++ L + +LHNP EV + + + Q
Sbjct: 168 HDIRRVLAKLPARRQNLLFSATFSDEIKGLAEKLLHNPL-----EVEVARRNTASEQITQ 222
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+ ++++ +L+ L E ++ L+FT T A L L K GI+SA ++ Q
Sbjct: 223 H-VHFVDKNRKRELLSQLIGEGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQ 281
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
+R L +F +G L+ATD RG
Sbjct: 282 GARTRALADFKSGGIRVLVATDIA---------------------------------ARG 308
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+D + + V+N+E+P YVHRIGRTGRA TG ++SLV DE K+ +I+ +
Sbjct: 309 LDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLL 364
>gi|359456199|ref|ZP_09245387.1| probable DEAD-box ATP-dependent RNA helicase SERP1688
[Pseudoalteromonas sp. BSi20495]
gi|358046759|dbj|GAA81636.1| probable DEAD-box ATP-dependent RNA helicase SERP1688
[Pseudoalteromonas sp. BSi20495]
Length = 442
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 139/416 (33%), Positives = 207/416 (49%), Gaps = 55/416 (13%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F +LG+D RL L +GI +PT IQ ++P L G D+ A++KTGSGKT A+LLP + R
Sbjct: 3 FTDLGIDTRLETQLAHQGITQPTDIQAHAVPTALAGHDIFAQSKTGSGKTLAFLLPAVQR 62
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+ + + SK P L++ PTREL QV++++ LI +K V++ +D
Sbjct: 63 VMKQKA-LSKRDPRVLIVAPTRELATQVFTQLRLLI----AGTAIKAVKILGGENFNDQI 117
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS- 206
AL P V+ATPG + ++ LQ L++L+ DEAD +L G+ + LK ++
Sbjct: 118 KALRNDPQFVVATPGRLADHITKRSLQL----SGLELLIFDEADRILDLGFTEQLKMINE 173
Query: 207 AVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
R Q LL SAT + VD L + +L P +TL + ++ Q +++
Sbjct: 174 QANHRLRQTLLFSATLDHAQVDALSRNLLKKPKQITLSAANEQHSDI----KQTLYLA-- 227
Query: 266 ERDKLLYILTLLKLELVQK---KALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 322
D L + LL+ L Q + +IFT T RL L G KS L +L Q+ R
Sbjct: 228 --DHLDHKEALLEHFLNQDDVGQCIIFTATRSDTSRLSEALNAKGFKSVALAGDLTQSKR 285
Query: 323 LHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDF 382
L I++ F+ F LI TD RG+D
Sbjct: 286 LDIMDSFSRENFKILITTDVAS---------------------------------RGLDL 312
Query: 383 KNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD 438
+V VINF++P++A YVHRIGRTGRA G ++SLV P + + IK+F+ D+
Sbjct: 313 LSVTHVINFDLPKHAEEYVHRIGRTGRAGFKGNAISLVGPKDWASYLAIKAFLNDE 368
>gi|152969387|ref|YP_001334496.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|365139153|ref|ZP_09345663.1| ATP-dependent RNA helicase rhlE [Klebsiella sp. 4_1_44FAA]
gi|378977819|ref|YP_005225960.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|386033962|ref|YP_005953875.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae KCTC 2242]
gi|419974710|ref|ZP_14490127.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|419977806|ref|ZP_14493104.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|419987058|ref|ZP_14502183.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|419991473|ref|ZP_14506438.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|419997938|ref|ZP_14512730.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|420003806|ref|ZP_14518449.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|420006904|ref|ZP_14521400.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|420012540|ref|ZP_14526853.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|420020791|ref|ZP_14534976.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|420024066|ref|ZP_14538080.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|420031055|ref|ZP_14544878.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|420038792|ref|ZP_14552435.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|420041896|ref|ZP_14555391.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|420046990|ref|ZP_14560308.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|420056136|ref|ZP_14569296.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|420061472|ref|ZP_14574460.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|420064158|ref|ZP_14576968.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|420069526|ref|ZP_14582181.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|420078157|ref|ZP_14590617.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|420084520|ref|ZP_14596776.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|424829756|ref|ZP_18254484.1| putative ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae
subsp. pneumoniae Ecl8]
gi|424934331|ref|ZP_18352703.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
gi|425077527|ref|ZP_18480630.1| ATP-dependent RNA helicase rhlE [Klebsiella pneumoniae subsp.
pneumoniae WGLW1]
gi|425088160|ref|ZP_18491253.1| ATP-dependent RNA helicase rhlE [Klebsiella pneumoniae subsp.
pneumoniae WGLW3]
gi|425090700|ref|ZP_18493785.1| ATP-dependent RNA helicase rhlE [Klebsiella pneumoniae subsp.
pneumoniae WGLW5]
gi|428940153|ref|ZP_19013245.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae VA360]
gi|150954236|gb|ABR76266.1| putative ATP-dependent RNA helicase [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|339761090|gb|AEJ97310.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae KCTC 2242]
gi|363654512|gb|EHL93410.1| ATP-dependent RNA helicase rhlE [Klebsiella sp. 4_1_44FAA]
gi|364517230|gb|AEW60358.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|397345127|gb|EJJ38254.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|397345977|gb|EJJ39096.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|397353346|gb|EJJ46420.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|397361555|gb|EJJ54216.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|397363734|gb|EJJ56371.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|397368249|gb|EJJ60856.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|397381416|gb|EJJ73587.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|397385751|gb|EJJ77846.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|397387462|gb|EJJ79487.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|397399449|gb|EJJ91101.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|397400795|gb|EJJ92433.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|397403895|gb|EJJ95434.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|397417455|gb|EJK08620.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|397417749|gb|EJK08912.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|397420966|gb|EJK12007.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|397430627|gb|EJK21316.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|397433767|gb|EJK24410.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|397442774|gb|EJK33116.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|397445167|gb|EJK35418.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|397450132|gb|EJK40246.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|405593236|gb|EKB66688.1| ATP-dependent RNA helicase rhlE [Klebsiella pneumoniae subsp.
pneumoniae WGLW1]
gi|405602292|gb|EKB75434.1| ATP-dependent RNA helicase rhlE [Klebsiella pneumoniae subsp.
pneumoniae WGLW3]
gi|405613678|gb|EKB86407.1| ATP-dependent RNA helicase rhlE [Klebsiella pneumoniae subsp.
pneumoniae WGLW5]
gi|407808518|gb|EKF79769.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
gi|414707181|emb|CCN28885.1| putative ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae
subsp. pneumoniae Ecl8]
gi|426302754|gb|EKV64945.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae VA360]
Length = 451
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 138/416 (33%), Positives = 209/416 (50%), Gaps = 60/416 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF+ LGL+ ++ A+ ++G +PT IQQ +IP +L+G+D++A A+TG+GKT + LPLL
Sbjct: 2 SFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 87 RLF-NESSPKSKLAPAALVLVPTRELCQQV------YSEVMALIELCKGQVQLKVVQLTS 139
RL NE K + AL+L PTREL QV YS+ + + L V V +
Sbjct: 62 RLIQNEPHAKGRRPVRALILTPTRELAAQVGENVRDYSKYLNIRSL----VVFGGVSINP 117
Query: 140 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE 199
M L G DI++ATPG + Q+ D ++ILVLDEAD +L G+
Sbjct: 118 QM------MKLRGGVDILVATPGRLLDLEH----QNAVSLDKVEILVLDEADRMLDMGFI 167
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
D++ + A +P Q LL SAT S ++ L + +LHNP EV + + + Q
Sbjct: 168 HDIRRVLAKLPARRQNLLFSATFSDEIKGLAEKLLHNPL-----EVEVARRNTASEQITQ 222
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+ ++++ +L+ L E ++ L+FT T A L L K GI+SA ++ Q
Sbjct: 223 H-VHFVDKNRKRELLSQLIGEGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQ 281
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
+R L +F +G L+ATD RG
Sbjct: 282 GARTRALADFKSGGIRVLVATDIA---------------------------------ARG 308
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+D + + V+N+E+P YVHRIGRTGRA TG ++SLV DE K+ +I+ +
Sbjct: 309 LDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLL 364
>gi|386284070|ref|ZP_10061293.1| ATP-dependent RNA helicase [Sulfurovum sp. AR]
gi|385344973|gb|EIF51686.1| ATP-dependent RNA helicase [Sulfurovum sp. AR]
Length = 429
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 136/409 (33%), Positives = 204/409 (49%), Gaps = 47/409 (11%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF LGL L+ A+ ++G PT IQQ +IP+++EGKDV+A A+TG+GKT + LPLL
Sbjct: 2 SFTNLGLSEPLLKAIKEQGYDTPTPIQQQAIPVVIEGKDVLAAAQTGTGKTAGFTLPLLE 61
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
+L K ALVL PTREL QV I+ + + + +
Sbjct: 62 KLSKTQPKMHKKQIRALVLTPTRELAAQVAES----IKTYGKHLPYTSTVIFGGVGINPQ 117
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
AA+ +IVIATPG + L + FS +L+ L+LDEAD +L G+ D+K L
Sbjct: 118 LAAIRKGVEIVIATPG---RLLDIAGQKGIDFS-ALECLILDEADRMLDMGFIHDIKKLM 173
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
++P+ Q LL SAT S+D+ L + +L++P ++ + + D++ V F +
Sbjct: 174 KLMPQKRQTLLFSATFSADIKALAEGLLNDPILVEVARQNETADQI--NQVIHFVDKRRK 231
Query: 267 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
R+ L ++ + K K+ L+FT T A +L LE+ GI +A ++ Q +R L
Sbjct: 232 RELLSQLIKVKKW----KQVLVFTRTKHGANKLTKELEESGISAAAIHGNKSQGARTKAL 287
Query: 327 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 386
F A L+ATD RGID +
Sbjct: 288 AAFKANGIRVLVATDIA---------------------------------ARGIDIDQLP 314
Query: 387 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
V+N+E+P YVHRIGRTGRA +G +VSLV DE ++ + I+ F+
Sbjct: 315 HVVNYELPNVPEDYVHRIGRTGRAGKSGEAVSLVCIDEHELLKNIEKFI 363
>gi|170094690|ref|XP_001878566.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647020|gb|EDR11265.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 453
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 138/411 (33%), Positives = 210/411 (51%), Gaps = 53/411 (12%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
+F+ LGL L+ AL + G + PT IQ S+P LEG+D++ A TGSGKT A+ LP+L
Sbjct: 18 TFKSLGLIDPLLEALEQVGYKTPTDIQVESLPHALEGRDIIGVASTGSGKTAAFALPILQ 77
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
+L+ + PK A VL PTREL Q+ + +L + + V + MPA +
Sbjct: 78 KLWED--PKGLF---ACVLAPTRELAYQISQQFESLGSAMGARCAVIVGGM--DMPAQAI 130
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKAL 205
ALA P IV+ATPG + + L ++K FS S+K LVLDEAD LL + + +
Sbjct: 131 --ALAKRPHIVVATPGRLMQHLE----ETKGFSLRSIKFLVLDEADRLLDLDFGASIDKI 184
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
VIP+ L SAT ++ V KL++ L NP + EV V + Q+++
Sbjct: 185 LKVIPKERTTYLFSATMTTKVAKLQRASLSNPVRI---EVSSKYQTV--STLLQYYLLMP 239
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
+DK Y++ L+ L Q ++FT T+ A RL + L G + L+ +L Q+ RL
Sbjct: 240 LKDKDAYLIYLIN-SLAQNSIIMFTRTVHDAQRLSIILRTLGFPAVPLHGQLSQSQRLGA 298
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
L +F +G L+ATD RG+D +V
Sbjct: 299 LGKFKSGGRRVLVATDVAS---------------------------------RGLDIPSV 325
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
VINF++P ++ Y+HR+GRT RA G S++LV+ ++++ + I+ VG
Sbjct: 326 DIVINFDIPTHSKDYIHRVGRTARAGRAGKSITLVTQYDVELVQRIEQVVG 376
>gi|121635074|ref|YP_975319.1| ATP-dependent RNA helicase [Neisseria meningitidis FAM18]
gi|385851042|ref|YP_005897557.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M04-240196]
gi|416177869|ref|ZP_11610238.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M6190]
gi|416182746|ref|ZP_11612182.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M13399]
gi|416191897|ref|ZP_11616278.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
ES14902]
gi|416213139|ref|ZP_11622123.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M01-240013]
gi|433469561|ref|ZP_20426982.1| helicase domain protein [Neisseria meningitidis 98080]
gi|433492761|ref|ZP_20449854.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM586]
gi|433494895|ref|ZP_20451963.1| putative ATP-dependent RNA helicase [Neisseria meningitidis NM762]
gi|433497061|ref|ZP_20454099.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis M7089]
gi|433499123|ref|ZP_20456132.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis M7124]
gi|433501099|ref|ZP_20458085.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM174]
gi|433503205|ref|ZP_20460166.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM126]
gi|120866780|emb|CAM10533.1| putative ATP-dependent RNA helicase [Neisseria meningitidis FAM18]
gi|325132439|gb|EGC55132.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M6190]
gi|325134396|gb|EGC57041.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M13399]
gi|325138213|gb|EGC60782.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
ES14902]
gi|325144497|gb|EGC66796.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M01-240013]
gi|325205865|gb|ADZ01318.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M04-240196]
gi|432203831|gb|ELK59881.1| helicase domain protein [Neisseria meningitidis 98080]
gi|432228547|gb|ELK84247.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM586]
gi|432230098|gb|ELK85777.1| putative ATP-dependent RNA helicase [Neisseria meningitidis NM762]
gi|432233554|gb|ELK89181.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis M7089]
gi|432234957|gb|ELK90577.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis M7124]
gi|432236390|gb|ELK91999.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM174]
gi|432239970|gb|ELK95514.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM126]
Length = 462
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 129/412 (31%), Positives = 201/412 (48%), Gaps = 55/412 (13%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F +L LD ++ A++ +G + PT IQ +IP LEG+D++A A+TGSGKT A+LLP L R
Sbjct: 5 FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
L S K P ALVL PTREL QV +A K + V +
Sbjct: 65 LTKRSEKPGK-GPRALVLTPTRELAAQVEKNALA---YAKNMRWFRTVSIVGGASFGYQT 120
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
AL+ P D+++ATPG + + +G K + L++L+LDEAD +L G+ DD++ +
Sbjct: 121 RALSKPVDLIVATPGRLMDLMQSG----KVDFERLEVLILDEADRMLDMGFIDDIETIVE 176
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE- 266
P Q LL SAT V KL + + +P I+ + V D +++ + C +
Sbjct: 177 ATPTDRQTLLFSATWDGAVGKLARKLTKDPEIIEVERVDD------QGKIEEQLLYCDDM 230
Query: 267 --RDKLL-YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+++LL +IL ++ + +IFT+T M + L + G + L+ ++PQ R
Sbjct: 231 RHKNRLLDHILRDANID----QCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRN 286
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
L + G L+ATD RGID
Sbjct: 287 RTLMDLRKGRCKILVATDV---------------------------------AARGIDVP 313
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ VIN+++P+ A YVHRIGRTGRA TG +++ +E +I+ ++
Sbjct: 314 TITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYI 365
>gi|416161277|ref|ZP_11606336.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
N1568]
gi|325128442|gb|EGC51323.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
N1568]
Length = 462
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 129/412 (31%), Positives = 201/412 (48%), Gaps = 55/412 (13%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F +L LD ++ A++ +G + PT IQ +IP LEG+D++A A+TGSGKT A+LLP L R
Sbjct: 5 FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
L S K P ALVL PTREL QV +A K + V +
Sbjct: 65 LTKRSEKPGK-GPRALVLTPTRELAAQVEKNALA---YAKNMRWFRTVSIVGGASFGYQT 120
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
AL+ P D+++ATPG + + +G K + L++L+LDEAD +L G+ DD++ +
Sbjct: 121 RALSKPVDLIVATPGRLMDLMQSG----KVDFERLEVLILDEADRMLDMGFIDDIETIVE 176
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE- 266
P Q LL SAT V KL + + +P I+ + V D +++ + C +
Sbjct: 177 ATPTDRQTLLFSATWDGAVGKLARKLTKDPEIIEVERVDD------QGKIEEQLLYCDDM 230
Query: 267 --RDKLL-YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+++LL +IL ++ + +IFT+T M + L + G + L+ ++PQ R
Sbjct: 231 RHKNRLLDHILRDANID----QCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRN 286
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
L + G L+ATD RGID
Sbjct: 287 RTLMDLRKGRCKILVATDV---------------------------------AARGIDVP 313
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ VIN+++P+ A YVHRIGRTGRA TG +++ +E +I+ ++
Sbjct: 314 TITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYI 365
>gi|115352774|ref|YP_774613.1| DEAD/DEAH box helicase [Burkholderia ambifaria AMMD]
gi|115282762|gb|ABI88279.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria AMMD]
Length = 480
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 142/412 (34%), Positives = 200/412 (48%), Gaps = 51/412 (12%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SFE LGL LV A+N+ G PT IQQ +IP +L G D++A A+TG+GKT + LP+L
Sbjct: 2 SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 87 RL--FNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
RL + +K A AL+L PTREL QV V A + K L+ + + +
Sbjct: 62 RLHTYYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYVK----LRSTVMFGGVSIN 117
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLK 203
AL DIV+ATPG + +Q K+ +L ILVLDEAD +L G+ D+K
Sbjct: 118 PQIDALKRGVDIVVATPGRLLDH-----MQQKTIDLSNLDILVLDEADRMLDMGFIHDIK 172
Query: 204 ALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWIS 263
+ A +P Q LL SAT S ++ L +L +P ++ + + V K I
Sbjct: 173 RVLAKLPPQRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAESVAQK------IH 226
Query: 264 CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+RD+ +LT L E + L+FT T A RL L K GI + ++ Q++R
Sbjct: 227 PVDRDRKRELLTHLIREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSART 286
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
L EF + L+ATD RGID
Sbjct: 287 RALAEFKSSTLQVLVATDI---------------------------------AARGIDID 313
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ V+NF++P YVHRIGRTGRA TG +VSLV DE ++ +I+ +
Sbjct: 314 QLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDIERLI 365
>gi|455643914|gb|EMF23035.1| ATP-dependent RNA helicase RhlE [Citrobacter freundii GTC 09479]
Length = 448
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 137/416 (32%), Positives = 209/416 (50%), Gaps = 60/416 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLL- 85
SF+ LGL+ ++ A+ ++G ++PT IQQ +IP +LEG+D++A A+TG+GKT + LPLL
Sbjct: 2 SFDSLGLNPEILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 86 HRLFNESSPKSKLAPAALVLVPTRELCQQV------YSEVMALIELCKGQVQLKVVQLTS 139
H + N+ KS+ AL+L PTREL Q+ YS+ + + L V V +
Sbjct: 62 HLITNQPHGKSRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSL----VVFGGVSINP 117
Query: 140 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE 199
M L G D++IATPG + Q+ D ++ILVLDEAD +L G+
Sbjct: 118 QM------MKLRGGVDVLIATPGRLLDLEH----QNAVKLDQVEILVLDEADRMLDMGFI 167
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
D++ + A +P Q LL SAT S D+ L + +LHNP + + ++V Q
Sbjct: 168 HDIRRVLAKLPAKRQNLLFSATFSDDIKSLAEKLLHNPLEIEVARRNTASEQV----TQH 223
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+R + L L+ + + ++ L+FT T A L L K GI+SA ++ Q
Sbjct: 224 VHFVDKKRKREL--LSQMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQ 281
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
+R L +F +G L+ATD RG
Sbjct: 282 GARTRALADFKSGDIRVLVATDIA---------------------------------ARG 308
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+D + + V+N+E+P YVHRIGRTGRA TG ++SLV DE K+ +I+ +
Sbjct: 309 LDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLL 364
>gi|134301861|ref|YP_001121830.1| DEAD/DEAH box helicase [Francisella tularensis subsp. tularensis
WY96-3418]
gi|421751661|ref|ZP_16188700.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
tularensis AS_713]
gi|421753517|ref|ZP_16190508.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
tularensis 831]
gi|421757241|ref|ZP_16194123.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
tularensis 80700103]
gi|421759101|ref|ZP_16195935.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
tularensis 70102010]
gi|424674420|ref|ZP_18111338.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
tularensis 70001275]
gi|134049638|gb|ABO46709.1| DEAD/DEAH box helicase [Francisella tularensis subsp. tularensis
WY96-3418]
gi|409086783|gb|EKM86896.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
tularensis 831]
gi|409086998|gb|EKM87108.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
tularensis AS_713]
gi|409091165|gb|EKM91168.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
tularensis 70102010]
gi|409092696|gb|EKM92663.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
tularensis 80700103]
gi|417434898|gb|EKT89830.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
tularensis 70001275]
Length = 441
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 127/410 (30%), Positives = 209/410 (50%), Gaps = 50/410 (12%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F +LGL+ + AL KKG KPT IQ +IP++L+G DV+A A+TG+GKT + LP++ R
Sbjct: 3 FSDLGLNSLICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQR 62
Query: 88 LFNESSPKSKLAPA-ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
L ++ PK++ L+L PTREL Q+ + I++ ++ + + +
Sbjct: 63 LLDQ--PKAQANRIKTLILTPTRELAAQIQEQ----IQIYAANTHIRSAVIFGGVSINPQ 116
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
L +I+IATPG + S ++ DSL VLDEAD +L G+ +DLK +
Sbjct: 117 MMKLRKGVEILIATPGRLLDLYSQNAVK----FDSLNTFVLDEADRMLDMGFINDLKKIH 172
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
++P+ Q L+ SAT SS++ L L+NP ++ DV + + K Q+ + + +
Sbjct: 173 NLLPKKLQTLMFSATFSSEIKNLANEFLNNPQFVS----ADVVNTTVKKITQKIY-TLDK 227
Query: 267 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
+K+ +++L+K + + + L+F+ T + A ++ L GI S+ ++ Q +R L
Sbjct: 228 SNKINALISLIKDQNLH-QVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKAL 286
Query: 327 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 386
+F + + L+ATD RGID +
Sbjct: 287 ADFKSNDINVLVATDIA---------------------------------ARGIDIAQLP 313
Query: 387 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
VIN ++ A YVHRIGRTGRA G ++SLVS DE++ I+ +G
Sbjct: 314 CVINLDLSNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSNIEHLIG 363
>gi|322703237|gb|EFY94849.1| ATP-dependent RNA helicase drs-1 [Metarhizium anisopliae ARSEF 23]
Length = 944
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 145/449 (32%), Positives = 214/449 (47%), Gaps = 60/449 (13%)
Query: 13 KQAEEEEAEAEEEK----------SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILE 62
+QA+ +E A EE+ SF+ + L ++ L G KPT IQ +IP+ L
Sbjct: 233 EQAKRDEFFAPEERQKSDKIVDLSSFQGMSLSRPILRGLAAVGFTKPTPIQAKTIPIALM 292
Query: 63 GKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMAL 122
GKDVV A TGSGKT A+ +P+L RL PK +VL PTREL Q + L
Sbjct: 293 GKDVVGGAVTGSGKTGAFFVPILERLLFR--PKKIPTTRVVVLTPTRELAMQCHDVGTKL 350
Query: 123 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DS 181
+ L V L+ +LR PDI++ATPG + S SF+ D+
Sbjct: 351 ARYTDIKFSLAVGGLSLKAQEVELRLR----PDIIVATPGRFIDHMRN----SASFNVDT 402
Query: 182 LKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILT 241
++ILVLDEAD +L G+ D+L + +P+ Q +L SAT +S VD+L ++ L+ P L
Sbjct: 403 VEILVLDEADRMLEDGFADELNEILTTLPKSRQTMLFSATMTSTVDRLIRVGLNKPVRLM 462
Query: 242 LPEVGDVKDEVIPKNVQQF-WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLK 300
+ D + + + VQ+F + DK + L L ++ +IF A R +
Sbjct: 463 V----DSQKKTVTTLVQEFVRLRPGREDKRMGYLAHLCKTFYHERVIIFFRQKKEAHRAR 518
Query: 301 LFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSR 360
+ G+ A L+ + Q+ R+ +E F G YL+ATD
Sbjct: 519 IIFGLLGLSCAELHGSMNQSQRISSVEAFRDGKVSYLLATD------------------- 559
Query: 361 KSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLV 420
L S RG+D K V TVIN+E PQ+ YVHR+GRT RA G +V+L
Sbjct: 560 ---------LAS-----RGLDIKGVDTVINYEAPQSLEIYVHRVGRTARAGRKGTAVTLA 605
Query: 421 SPDEMKIFE-EIKSFVGDDENEDSNIIAP 448
+ + K+ + +K+ S +IAP
Sbjct: 606 AEGDRKVVKAAVKAGKAQGAKITSRVIAP 634
>gi|421559409|ref|ZP_16005283.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 92045]
gi|433488648|ref|ZP_20445810.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis M13255]
gi|254674247|emb|CBA10031.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
alpha275]
gi|402335908|gb|EJU71171.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 92045]
gi|432223481|gb|ELK79262.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis M13255]
Length = 462
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 129/412 (31%), Positives = 201/412 (48%), Gaps = 55/412 (13%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F +L LD ++ A++ +G + PT IQ +IP LEG+D++A A+TGSGKT A+LLP L R
Sbjct: 5 FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
L S K P ALVL PTREL QV +A K + V +
Sbjct: 65 LTKRSEKPGK-GPRALVLTPTRELAAQVEKNALA---YAKNMRWFRTVSIVGGASFGYQT 120
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
AL+ P D+++ATPG + + +G K + L++L+LDEAD +L G+ DD++ +
Sbjct: 121 RALSKPVDLIVATPGRLMDLMQSG----KVDFERLEVLILDEADRMLDMGFIDDIETIVE 176
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE- 266
P Q LL SAT V KL + + +P I+ + V D +++ + C +
Sbjct: 177 ATPSDRQTLLFSATWDGAVGKLARKLTKDPEIIEVERVDD------QGKIEEQLLYCDDM 230
Query: 267 --RDKLL-YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+++LL +IL ++ + +IFT+T M + L + G + L+ ++PQ R
Sbjct: 231 RHKNRLLDHILRDANID----QCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRN 286
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
L + G L+ATD RGID
Sbjct: 287 RTLMDLRKGRCKILVATDV---------------------------------AARGIDVP 313
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ VIN+++P+ A YVHRIGRTGRA TG +++ +E +I+ ++
Sbjct: 314 TITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYI 365
>gi|221211314|ref|ZP_03584293.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
CGD1]
gi|221168675|gb|EEE01143.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
CGD1]
Length = 480
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 144/411 (35%), Positives = 199/411 (48%), Gaps = 49/411 (11%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SFE LGL LV A+N+ G PT IQQ +IP +L G D++A A+TG+GKT + LP+L
Sbjct: 2 SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 87 RL--FNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
RL F +K A AL+L PTREL QV V A + K L+ + + +
Sbjct: 62 RLHTFYTEHRSAKRAVRALILTPTRELAAQVEESVRAYSKYLK----LRSTVMFGGVSIN 117
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
AL DIV+ATPG + L ++ SD L ILVLDEAD +L G+ D+K
Sbjct: 118 PQIDALKRGVDIVVATPG---RLLDHMQQKTIDLSD-LDILVLDEADRMLDMGFIHDIKR 173
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264
+ A +P Q LL SAT S ++ L +L +P ++ + + V K I
Sbjct: 174 VLAKLPPRRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAETVAQK------IHP 227
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
+RD+ +LT L E + L+FT T A RL L K GI + ++ Q++R
Sbjct: 228 VDRDRKRELLTHLIREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTR 287
Query: 325 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 384
L EF L+ATD RGID
Sbjct: 288 ALAEFKNNTLQVLVATDI---------------------------------AARGIDIDQ 314
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ V+NF++P YVHRIGRTGRA TG +VSLV DE ++ +I+ +
Sbjct: 315 LPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDIERLI 365
>gi|254251488|ref|ZP_04944806.1| Superfamily I DNA and RNA helicase [Burkholderia dolosa AUO158]
gi|124894097|gb|EAY67977.1| Superfamily I DNA and RNA helicase [Burkholderia dolosa AUO158]
Length = 480
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 144/412 (34%), Positives = 199/412 (48%), Gaps = 51/412 (12%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SFE LGL LV A+N+ G PT IQQ +IP +L G D++A A+TG+GKT + LP+L
Sbjct: 5 SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 64
Query: 87 RL--FNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
RL F +K A AL+L PTREL QV V A + K L+ + + +
Sbjct: 65 RLHTFYAEHRNAKRAVRALILTPTRELAAQVEESVRAYSKYLK----LRSTVMFGGVSIN 120
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLK 203
AL DIV+ATPG + +Q K+ SL ILVLDEAD +L G+ D+K
Sbjct: 121 PQIDALKRGVDIVVATPGRLLDH-----MQQKTIDLSSLDILVLDEADRMLDMGFIHDIK 175
Query: 204 ALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWIS 263
+ A +P Q LL SAT S ++ L +L +P ++ + + V K I
Sbjct: 176 RVLAKLPPRRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAETVAQK------IH 229
Query: 264 CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+RD+ +LT L E + L+FT T A RL L K GI + ++ Q++R
Sbjct: 230 PVDRDRKRELLTHLIREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSART 289
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
L EF L+ATD RGID
Sbjct: 290 RALTEFKNSTLQVLVATDI---------------------------------AARGIDID 316
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ V+NF++P YVHRIGRTGRA TG +VSLV DE ++ +I+ +
Sbjct: 317 QLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDIERLI 368
>gi|444910739|ref|ZP_21230918.1| ATP-dependent RNA helicase RhlE [Cystobacter fuscus DSM 2262]
gi|444718836|gb|ELW59644.1| ATP-dependent RNA helicase RhlE [Cystobacter fuscus DSM 2262]
Length = 550
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 132/401 (32%), Positives = 200/401 (49%), Gaps = 66/401 (16%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF+ LGL + A+ + PT IQ +IP L G+DV+ A TG+GKT AYLLPL+
Sbjct: 4 SFKTLGLSDESLDAVRRARFASPTPIQAQAIPPALAGRDVIGCAATGTGKTAAYLLPLVE 63
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
RL PA +VL PTREL QQ+ E +G Q V+ T + +
Sbjct: 64 RLAGAPG------PAGVVLAPTRELVQQIADEAT-FFGQPRGLAQAVVIGGTDATAQVE- 115
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
AL P +V+ATPG + L GV+ ++++LVLDEAD +L G+ +L+ +
Sbjct: 116 --ALRQNPSLVLATPGRLADLLQAGVVN----LSTVRMLVLDEADRMLEMGFMPELEKIL 169
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIP------KNVQQF 260
A +PR Q LL SAT +V + + +L P V+ EV P + VQ+
Sbjct: 170 AALPRERQTLLFSATLGHNVTRFAQEVLRKP----------VRVEVTPSGTPAARAVQRL 219
Query: 261 WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 320
+ SE +K +LTLL + Q A++FT T + A +++ +L++ G K+A+++++ Q
Sbjct: 220 YDVKSE-EKYPLLLTLLARD--QLSAIVFTRTRERAEKVQGYLKEAGHKAALIHSDRTQG 276
Query: 321 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 380
R LE F G + L+ATD RG+
Sbjct: 277 QRRQALEGFRKGQYRCLVATDIAS---------------------------------RGL 303
Query: 381 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS 421
D +++ VINF++P + YVHRIGRT RA +G + + V+
Sbjct: 304 DVEDIGHVINFDLPHSPEDYVHRIGRTARAGASGRASTFVT 344
>gi|238893853|ref|YP_002918587.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|402781658|ref|YP_006637204.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae 1084]
gi|238546169|dbj|BAH62520.1| putative ATP-dependent RNA helicase [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|402542534|gb|AFQ66683.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae 1084]
Length = 451
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 138/416 (33%), Positives = 209/416 (50%), Gaps = 60/416 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF+ LGL+ ++ A+ ++G +PT IQQ +IP +L+G+D++A A+TG+GKT + LPLL
Sbjct: 2 SFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 87 RLF-NESSPKSKLAPAALVLVPTRELCQQV------YSEVMALIELCKGQVQLKVVQLTS 139
RL NE K + AL+L PTREL QV YS+ + + L V V +
Sbjct: 62 RLIQNEPHAKGRRPVRALILTPTRELAAQVGENVCDYSKYLNIRSL----VVFGGVSINP 117
Query: 140 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE 199
M L G DI++ATPG + Q+ D ++ILVLDEAD +L G+
Sbjct: 118 QM------MKLRGGVDILVATPGRLLDLEH----QNAVSLDKVEILVLDEADRMLDMGFI 167
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
D++ + A +P Q LL SAT S ++ L + +LHNP EV + + + Q
Sbjct: 168 HDIRRVLAKLPARRQNLLFSATFSDEIKGLAEKLLHNPL-----EVEVARRNTASEQITQ 222
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+ ++++ +L+ L E ++ L+FT T A L L K GI+SA ++ Q
Sbjct: 223 H-VHFVDKNRKRELLSQLIGEGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQ 281
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
+R L +F +G L+ATD RG
Sbjct: 282 GARTRALADFKSGGIRVLVATDIA---------------------------------ARG 308
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+D + + V+N+E+P YVHRIGRTGRA TG ++SLV DE K+ +I+ +
Sbjct: 309 LDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLL 364
>gi|170698992|ref|ZP_02890050.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
IOP40-10]
gi|170136099|gb|EDT04369.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
IOP40-10]
Length = 472
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 142/412 (34%), Positives = 200/412 (48%), Gaps = 51/412 (12%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SFE LGL LV A+N+ G PT IQQ +IP +L G D++A A+TG+GKT + LP+L
Sbjct: 2 SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 87 RL--FNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
RL + +K A AL+L PTREL QV V A + K L+ + + +
Sbjct: 62 RLHTYYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYVK----LRSTVMFGGVSIN 117
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLK 203
AL DIV+ATPG + +Q K+ +L ILVLDEAD +L G+ D+K
Sbjct: 118 PQIDALKRGVDIVVATPGRLLDH-----MQQKTIDLSNLDILVLDEADRMLDMGFIHDIK 172
Query: 204 ALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWIS 263
+ A +P Q LL SAT S ++ L +L +P ++ + + V K I
Sbjct: 173 RVLAKLPPQRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAESVAQK------IH 226
Query: 264 CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+RD+ +LT L E + L+FT T A RL L K GI + ++ Q++R
Sbjct: 227 PVDRDRKRELLTHLIREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSART 286
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
L EF + L+ATD RGID
Sbjct: 287 RALAEFKSSTLQVLVATDI---------------------------------AARGIDID 313
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ V+NF++P YVHRIGRTGRA TG +VSLV DE ++ +I+ +
Sbjct: 314 QLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDIERLI 365
>gi|358386646|gb|EHK24241.1| hypothetical protein TRIVIDRAFT_31450 [Trichoderma virens Gv29-8]
Length = 479
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 133/415 (32%), Positives = 206/415 (49%), Gaps = 52/415 (12%)
Query: 23 EEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLL 82
EE K+F+ELG+ L A + PT IQ SIP+ L+G+DV+ A+TGSGKT A+ L
Sbjct: 53 EEPKTFKELGIVDSLCEACESLNYKHPTSIQAKSIPVALQGRDVIGLAETGSGKTAAFAL 112
Query: 83 PLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMP 142
P+L L + P LVL PTREL Q+ AL L + L+ + +
Sbjct: 113 PILQALLEKPQPL-----FGLVLAPTRELAAQIGQSFEALGAL----ISLRCAVIVGGLD 163
Query: 143 ASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDD 201
AL P I++ATPG + L ++K FS SLK LV+DEAD LL +
Sbjct: 164 MVPQAIALGKKPHIIVATPGRLVDHLE----KTKGFSLRSLKYLVMDEADRLLDMDFGPS 219
Query: 202 LKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW 261
+ + IPR + L SAT SS V+ L++ L +P ++ V K + + + Q +
Sbjct: 220 IDKILKFIPRERRTYLFSATLSSKVESLQRASLRDPVRVS---VSSSKYQTV-STLLQHY 275
Query: 262 ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 321
I + K Y++ L+ E K +IFT T+ R+ + L G + L+ +L Q+S
Sbjct: 276 IFVPHKRKDTYLIYLVN-EFAGKSIIIFTRTVFETQRIAILLRTLGFGAIPLHGQLSQSS 334
Query: 322 RLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGID 381
RL L +F G + L+ATD RG+D
Sbjct: 335 RLGALNKFKGGSREILVATDVA---------------------------------ARGLD 361
Query: 382 FKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
V V+N ++PQ++ Y+HR+GRT RA +G ++S+V+ +++I++ I++ +G
Sbjct: 362 IPAVDVVLNLDLPQDSKTYIHRVGRTARAGKSGIAISIVTQYDVEIYQRIEAALG 416
>gi|428151523|ref|ZP_18999239.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae ST512-K30BO]
gi|427538506|emb|CCM95377.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae ST512-K30BO]
Length = 459
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 138/416 (33%), Positives = 209/416 (50%), Gaps = 60/416 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF+ LGL+ ++ A+ ++G +PT IQQ +IP +L+G+D++A A+TG+GKT + LPLL
Sbjct: 2 SFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 87 RLF-NESSPKSKLAPAALVLVPTRELCQQV------YSEVMALIELCKGQVQLKVVQLTS 139
RL NE K + AL+L PTREL QV YS+ + + L V V +
Sbjct: 62 RLIQNEPHAKGRRPVRALILTPTRELAAQVGENVRDYSKYLNIRSL----VVFGGVSINP 117
Query: 140 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE 199
M L G DI++ATPG + Q+ D ++ILVLDEAD +L G+
Sbjct: 118 QM------MKLRGGVDILVATPGRLLDLEH----QNAVSLDKVEILVLDEADRMLDMGFI 167
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
D++ + A +P Q LL SAT S ++ L + +LHNP EV + + + Q
Sbjct: 168 HDIRRVLAKLPARRQNLLFSATFSDEIKGLAEKLLHNPL-----EVEVARRNTASEQITQ 222
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+ ++++ +L+ L E ++ L+FT T A L L K GI+SA ++ Q
Sbjct: 223 H-VHFVDKNRKRELLSQLIGEGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQ 281
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
+R L +F +G L+ATD RG
Sbjct: 282 GARTRALADFKSGGIRVLVATDIA---------------------------------ARG 308
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+D + + V+N+E+P YVHRIGRTGRA TG ++SLV DE K+ +I+ +
Sbjct: 309 LDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLL 364
>gi|254369445|ref|ZP_04985457.1| hypothetical protein FTAG_00428 [Francisella tularensis subsp.
holarctica FSC022]
gi|157122395|gb|EDO66535.1| hypothetical protein FTAG_00428 [Francisella tularensis subsp.
holarctica FSC022]
Length = 441
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 127/410 (30%), Positives = 210/410 (51%), Gaps = 50/410 (12%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F +LGL+ + +AL KKG KPT IQ +IP++L+G DV+A A+TG+GKT + LP++ R
Sbjct: 3 FSDLGLNSLICNALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQR 62
Query: 88 LFNESSPKSKLAPA-ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
L ++ PK++ L+L PTREL Q+ + I++ ++ + + +
Sbjct: 63 LLDQ--PKAQANRIKTLILTPTRELAAQIQEQ----IQIYAANTHIRSGVIFGGVSINPQ 116
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
L +I+IATPG + S ++ DSL VLDEAD +L G+ +DLK +
Sbjct: 117 MMKLRKGVEILIATPGRLLDLYSQNAVK----FDSLNTFVLDEADRMLDMGFINDLKKIH 172
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
++P+ Q L+ SAT SS++ L L+NP ++ DV + + K Q+ + + +
Sbjct: 173 NLLPKKLQTLMFSATFSSEIKNLANEFLNNPQFVS----ADVVNTTVKKITQKIY-TLDK 227
Query: 267 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
+K+ +++L+K + + + L+F+ T + A ++ L GI S+ ++ Q +R L
Sbjct: 228 SNKINALISLIKDQNLH-QVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKAL 286
Query: 327 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 386
+F + + L+ATD RGID +
Sbjct: 287 ADFKSNDINVLVATDIA---------------------------------ARGIDIAQLP 313
Query: 387 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
VIN ++ A YVHRIGRTGRA G ++SLVS DE++ I+ +G
Sbjct: 314 CVINLDLSNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSNIEHLIG 363
>gi|410621771|ref|ZP_11332615.1| ATP-dependent RNA helicase rhlB [Glaciecola pallidula DSM 14239 =
ACAM 615]
gi|410158664|dbj|GAC27989.1| ATP-dependent RNA helicase rhlB [Glaciecola pallidula DSM 14239 =
ACAM 615]
Length = 421
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 137/412 (33%), Positives = 213/412 (51%), Gaps = 52/412 (12%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF+ LGL ++ A+ +KG ++P+ IQ+ IP++LEGKDV+A A+TG+GKT A+ LP+L
Sbjct: 2 SFKSLGLSPLVLQAIEEKGYKQPSPIQEQGIPVVLEGKDVMAAAQTGTGKTAAFTLPILS 61
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIEL--CKGQVQLKVVQLTSSMPAS 144
+F ++P + AL+L PTREL Q+ + + + K QV V + M
Sbjct: 62 -MFENTTPAAANNVKALILTPTRELAAQIDENIRSYGKHLNLKTQVVFGGVGINPQM--I 118
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
LR + DI++ATPG + + ++ FS L+ILVLDEAD +L G+ D+K
Sbjct: 119 KLRRGV----DILVATPG---RLMDLYQQRAVKFS-QLEILVLDEADRMLDMGFIHDIKK 170
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264
+ A++P+ Q LL SAT S D+ KL K I++NP +++ + K+ V+Q I
Sbjct: 171 IMAILPKKRQNLLFSATFSDDIRKLAKTIVNNPVEISV----NTKNST-ATAVEQVIIPV 225
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
+ +K +L+ L +E + L+F T A RL FL K I ++ ++ Q +R
Sbjct: 226 DKTNK-NTLLSHLIIENNWHQVLVFCRTKHGADRLAKFLIKKNISASAIHGNKSQGARTR 284
Query: 325 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 384
L +F +G L ATD RGID
Sbjct: 285 ALADFKSGKVQILAATDIA---------------------------------ARGIDINE 311
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
+ ++NF++P YVHRIGRTGRA TG + S + ++ K +I+S +G
Sbjct: 312 LPQIVNFDLPNIPEDYVHRIGRTGRAGATGHAYSFATIEDKKNISDIQSLIG 363
>gi|385323970|ref|YP_005878409.1| putative ATP-dependent RNA helicase [Neisseria meningitidis 8013]
gi|385855420|ref|YP_005901933.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M01-240355]
gi|421565630|ref|ZP_16011403.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM3081]
gi|261392357|emb|CAX49897.1| putative ATP-dependent RNA helicase [Neisseria meningitidis 8013]
gi|325204361|gb|ADY99814.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M01-240355]
gi|402344065|gb|EJU79207.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM3081]
Length = 462
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 129/412 (31%), Positives = 201/412 (48%), Gaps = 55/412 (13%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F +L LD ++ A++ +G + PT IQ +IP LEG+D++A A+TGSGKT A+LLP L R
Sbjct: 5 FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
L S K P ALVL PTREL QV +A K + V +
Sbjct: 65 LTKRSEKPGK-GPRALVLTPTRELAAQVEKNALA---YAKNMRWFRTVSIVGGASFGYQT 120
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
AL+ P D+++ATPG + + +G K + L++L+LDEAD +L G+ DD++ +
Sbjct: 121 RALSKPVDLIVATPGRLMDLMQSG----KVDFERLEVLILDEADRMLDMGFIDDIETIVE 176
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE- 266
P Q LL SAT V KL + + +P I+ + V D +++ + C +
Sbjct: 177 ATPSDRQTLLFSATWDGAVGKLARKLTKDPEIIEVERVDD------QGKIEEQLLYCDDM 230
Query: 267 --RDKLL-YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+++LL +IL ++ + +IFT+T M + L + G + L+ ++PQ R
Sbjct: 231 RHKNRLLDHILRDANID----QCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRN 286
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
L + G L+ATD RGID
Sbjct: 287 RTLMDLRKGRCKILVATDV---------------------------------AARGIDVP 313
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ VIN+++P+ A YVHRIGRTGRA TG +++ +E +I+ ++
Sbjct: 314 TITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYI 365
>gi|70996226|ref|XP_752868.1| ATP-dependent RNA helicase (Drs1) [Aspergillus fumigatus Af293]
gi|74672247|sp|Q4WRV2.1|DRS1_ASPFU RecName: Full=ATP-dependent RNA helicase drs1
gi|66850503|gb|EAL90830.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus fumigatus
Af293]
gi|159131623|gb|EDP56736.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus fumigatus
A1163]
Length = 830
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 153/502 (30%), Positives = 236/502 (47%), Gaps = 78/502 (15%)
Query: 26 KSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLL 85
+SF++ L ++ L PT IQQ +IP+ L GKD+V A TGSGKT A+++P+L
Sbjct: 310 RSFQDFNLSRPILRGLASVNFTTPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPIL 369
Query: 86 HRLF--NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPA 143
RL P S++A +L+PTREL Q Y+ L + QL
Sbjct: 370 ERLLFRPRKVPTSRVA----ILMPTRELAVQCYNVATKLAT----HTDITFCQLVGGFSL 421
Query: 144 SDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDL 202
+ L PD++IATPG + S SF+ D+L+ILVLDEAD +L G+ D+L
Sbjct: 422 REQENILKKRPDVIIATPGRFIDHMRN----SPSFTVDTLEILVLDEADRMLEDGFADEL 477
Query: 203 KALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-W 261
+ IP+ Q +L SAT + VDKL ++ L+ P L + D K Q+F
Sbjct: 478 NEILTTIPKSRQTMLFSATMTDSVDKLIRVGLNRPVRLMV----DSKKNTSMNLTQEFVR 533
Query: 262 ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 321
+ DK L L L E+ + ++F A R+++ G+K+A L+ + Q
Sbjct: 534 LRPGREDKRLGYLLYLCNEIYTGRVIVFFRQKREAHRVRIVFGLLGLKAAELHGSMSQEQ 593
Query: 322 RLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGID 381
R+ +E F G +L+ATD L S RG+D
Sbjct: 594 RIKSVENFREGKVAFLLATD----------------------------LAS-----RGLD 620
Query: 382 FKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENE 441
K V TVIN+E PQ+ Y+HR+GRT RA +G + ++ + + KI +KS V + +
Sbjct: 621 IKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKI---VKSAVKAGKAQ 677
Query: 442 DSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKL-----KA 496
+ I++ R D A + + A + +D E+L EKL +A
Sbjct: 678 GAKIVS---------------RVVDPAVA-DEWAAKAKGLEDEIEEVLQEEKLEKQMAQA 721
Query: 497 HFEVNPKDLDLLKHDKDLSKKP 518
+V K +L+KH+ ++ +P
Sbjct: 722 EMQVT-KGENLIKHEAEIMSRP 742
>gi|421909360|ref|ZP_16339178.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae ST258-K26BO]
gi|410116748|emb|CCM81803.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae ST258-K26BO]
Length = 463
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 138/416 (33%), Positives = 209/416 (50%), Gaps = 60/416 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF+ LGL+ ++ A+ ++G +PT IQQ +IP +L+G+D++A A+TG+GKT + LPLL
Sbjct: 2 SFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 87 RLF-NESSPKSKLAPAALVLVPTRELCQQV------YSEVMALIELCKGQVQLKVVQLTS 139
RL NE K + AL+L PTREL QV YS+ + + L V V +
Sbjct: 62 RLIQNEPHAKGRRPVRALILTPTRELAAQVGENVRDYSKYLNIRSL----VVFGGVSINP 117
Query: 140 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE 199
M L G DI++ATPG + Q+ D ++ILVLDEAD +L G+
Sbjct: 118 QM------MKLRGGVDILVATPGRLLDLEH----QNAVSLDKVEILVLDEADRMLDMGFI 167
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
D++ + A +P Q LL SAT S ++ L + +LHNP EV + + + Q
Sbjct: 168 HDIRRVLAKLPARRQNLLFSATFSDEIKGLAEKLLHNPL-----EVEVARRNTASEQITQ 222
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+ ++++ +L+ L E ++ L+FT T A L L K GI+SA ++ Q
Sbjct: 223 H-VHFVDKNRKRELLSQLIGEGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQ 281
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
+R L +F +G L+ATD RG
Sbjct: 282 GARTRALADFKSGGIRVLVATDIA---------------------------------ARG 308
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+D + + V+N+E+P YVHRIGRTGRA TG ++SLV DE K+ +I+ +
Sbjct: 309 LDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLL 364
>gi|295677616|ref|YP_003606140.1| DEAD/DEAH box helicase [Burkholderia sp. CCGE1002]
gi|295437459|gb|ADG16629.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
Length = 518
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 144/412 (34%), Positives = 204/412 (49%), Gaps = 52/412 (12%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF+ LGL LV A+N+ G PT IQ +IP +L G D++A A+TG+GKT + LP+L
Sbjct: 2 SFDSLGLSEPLVRAVNELGYTSPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 87 RLFNESSPKS--KLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
RL N +P + K AL+L PTREL QV V A + K LK + + +
Sbjct: 62 RL-NSMAPAAGGKRVVRALILTPTRELAAQVEESVRAYGKYLK----LKSTVMFGGVGIN 116
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS-LKILVLDEADLLLSYGYEDDLK 203
AL DIV+ATPG + L +Q K+ S L+ILVLDEAD +L G+ D+K
Sbjct: 117 PQIDALKRGVDIVVATPG---RLLDH--MQQKTIDLSHLEILVLDEADRMLDMGFIHDIK 171
Query: 204 ALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWIS 263
+ A +P Q LL SAT S ++ L +L +P ++ + + V K I
Sbjct: 172 RVLAKLPPKRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAETVAQK------IH 225
Query: 264 CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+RD+ +LT L + + L+FT T A RL L K GI + ++ Q++R
Sbjct: 226 PVDRDRKRELLTHLIRQHSWFQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSART 285
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
L EF G L+ATD RGID
Sbjct: 286 RALAEFKDGTLQVLVATDI---------------------------------AARGIDID 312
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ V+NF++P YVHRIGRTGRA TG +VSLV DE+++ ++I+ +
Sbjct: 313 QLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLLKDIEKLI 364
>gi|78067467|ref|YP_370236.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
gi|77968212|gb|ABB09592.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
Length = 484
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 143/412 (34%), Positives = 200/412 (48%), Gaps = 51/412 (12%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SFE LGL LV A+N+ G PT IQQ +IP +L G D++A A+TG+GKT + LP+L
Sbjct: 2 SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 87 RL--FNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
RL F + +K A AL+L PTREL QV V A + K L+ + + +
Sbjct: 62 RLHTFYADNRGAKRAVRALILTPTRELAAQVEESVRAYSKYLK----LRSTVMFGGVSIN 117
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLK 203
AL DIV+ATPG + +Q K+ +L ILVLDEAD +L G+ D+K
Sbjct: 118 PQIDALKRGVDIVVATPGRLLDH-----MQQKTIDLSNLDILVLDEADRMLDMGFIHDIK 172
Query: 204 ALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWIS 263
+ A +P Q LL SAT S ++ L +L +P ++ + + V K I
Sbjct: 173 RVLAKLPPQRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAESVAQK------IH 226
Query: 264 CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+RD+ +LT L E + L+FT T A RL L K GI + ++ Q++R
Sbjct: 227 PVDRDRKRELLTHLIREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSART 286
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
L EF L+ATD RGID
Sbjct: 287 RALAEFKNSTLQVLVATDI---------------------------------AARGIDID 313
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ V+NF++P YVHRIGRTGRA TG +VSLV DE ++ +I+ +
Sbjct: 314 QLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDIERLI 365
>gi|117919870|ref|YP_869062.1| 4a-hydroxytetrahydrobiopterin dehydratase [Shewanella sp. ANA-3]
gi|117612202|gb|ABK47656.1| 4a-hydroxytetrahydrobiopterin dehydratase [Shewanella sp. ANA-3]
Length = 427
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 138/409 (33%), Positives = 201/409 (49%), Gaps = 52/409 (12%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF ELG+ L + L++ PT IQ A+IP +L G+DV+A A TGSGKT A+ +PLL
Sbjct: 10 SFAELGIIAPLCNRLSELTYAAPTPIQAATIPAVLSGRDVLAGANTGSGKTAAFAVPLLQ 69
Query: 87 RLFN-ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASD 145
RLF +++ KS LVLVPTREL QQV ++ G QLK+V + +
Sbjct: 70 RLFEAKTAEKSAGQVRCLVLVPTRELAQQVADSFLSYASHFNG--QLKIVAAFGGVSVNL 127
Query: 146 LRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL 205
+L D+++ATPG + L++ L+ S LVLDEAD +LS G+ D+L +
Sbjct: 128 QMQSLRAGADVLVATPGRLLDLLASNALKLNRVSA----LVLDEADRMLSLGFTDELNQV 183
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNP--YILTLPEVGDVKDEVIPKNVQQFWIS 263
+P Q LL SAT +V L +LH P Y L + ++ VI N
Sbjct: 184 LEALPSKKQTLLYSATFPEEVRALTAKLLHQPLEYHLQSEQESTIEQRVITVN------- 236
Query: 264 CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
R++ +L L + +ALIF + + L L K GI + + + + Q +R
Sbjct: 237 ---REQKTALLAHLIKQHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGART 293
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
+L+ F +G LIATD RGID
Sbjct: 294 RVLDGFKSGEISVLIATDIA---------------------------------ARGIDID 320
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432
+ VINF++P++ A Y+HRIGR+GRA G +V+L+S +E F I+
Sbjct: 321 KLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEEYHHFGVIE 369
>gi|115492615|ref|XP_001210935.1| hypothetical protein ATEG_00849 [Aspergillus terreus NIH2624]
gi|121742543|sp|Q0CZN5.1|DRS1_ASPTN RecName: Full=ATP-dependent RNA helicase drs1
gi|114197795|gb|EAU39495.1| hypothetical protein ATEG_00849 [Aspergillus terreus NIH2624]
Length = 821
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 137/421 (32%), Positives = 204/421 (48%), Gaps = 57/421 (13%)
Query: 15 AEEEEAEAEE----EKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARA 70
A EEE E+ ++SF+E L ++ L PT IQ+ +IP+ L GKD+V A
Sbjct: 289 APEEEKTKEQADGAQRSFQEFNLSRPILRGLAAVNFTNPTPIQRKTIPVALLGKDIVGSA 348
Query: 71 KTGSGKTFAYLLPLLHRLF--NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKG 128
TGSGKT A+++P+L RL P S++A +L+PTREL Q Y+ L
Sbjct: 349 VTGSGKTAAFVVPILERLLFRPRKVPTSRVA----ILMPTRELAVQCYNVATKLATYT-- 402
Query: 129 QVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVL 187
+ QL + L PD++IATPG + S SF+ D+L+ILVL
Sbjct: 403 --DITFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRN----SASFTVDTLEILVL 456
Query: 188 DEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGD 247
DEAD +L G+ D+L + IP+ Q +L SAT + VDKL ++ L+ P L + D
Sbjct: 457 DEADRMLEDGFADELNEILTTIPKSRQTMLFSATMTDTVDKLIRVGLNRPVRLMV----D 512
Query: 248 VKDEVIPKNVQQF-WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKF 306
K VQ+F + DK L L L E+ + ++F A R+++
Sbjct: 513 SKKNTSLTLVQEFVRLRPGREDKRLGYLLYLCKEIYTGRVIVFFRQKREAHRVRIVFGLL 572
Query: 307 GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHP 366
G+K+A L+ + Q R+ +E F G +L+ATD
Sbjct: 573 GLKAAELHGSMSQEQRIKSVENFRDGKVAFLLATD------------------------- 607
Query: 367 KAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMK 426
L S RG+D K V TVIN+E PQ+ Y+HR+GRT RA +G + ++ + + K
Sbjct: 608 ---LAS-----RGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRK 659
Query: 427 I 427
+
Sbjct: 660 V 660
>gi|302660698|ref|XP_003022025.1| hypothetical protein TRV_03842 [Trichophyton verrucosum HKI 0517]
gi|291185951|gb|EFE41407.1| hypothetical protein TRV_03842 [Trichophyton verrucosum HKI 0517]
Length = 474
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 136/433 (31%), Positives = 216/433 (49%), Gaps = 56/433 (12%)
Query: 9 SKEVKQAEEEEAEAEEE----KSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGK 64
S+ ++ EE E + K+F++LG+ L A G + PT IQ SIPL L+G+
Sbjct: 28 SERGQETPEESGEGPTDTKAPKTFKDLGIIDSLCDACTSLGYKTPTPIQAESIPLALQGR 87
Query: 65 DVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIE 124
D+V A+TGSGKT A+ LP+L L + P LVL PTREL Q+ AL
Sbjct: 88 DLVGLAETGSGKTAAFALPILQALMEKPQPY-----FGLVLAPTRELAVQITEAFEALGS 142
Query: 125 LCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLK 183
L + ++ + M +L P I++ATPG + L +K FS +LK
Sbjct: 143 L----ISVRCAVIVGGMDMISQSISLGKKPHIIVATPGRLLDHLE----NTKGFSLRNLK 194
Query: 184 ILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLP 243
LV+DEAD LL + L + V+PR + L SAT SS V+ L++ L NP ++
Sbjct: 195 YLVMDEADRLLDLDFGPVLDKILKVLPRERRTYLFSATLSSKVESLQRASLSNPLRVS-- 252
Query: 244 EVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFL 303
+ K + + + Q +I + K +Y++ +L E + +IFT T++ RL + L
Sbjct: 253 -ISSNKYQTV-STLLQSYIFIPHKYKDIYLVHILN-EFPGQTTIIFTRTVNETQRLSILL 309
Query: 304 EKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSK 363
G + L+ +L Q++RL L +F +G D L+ATD
Sbjct: 310 RALGFGAIPLHGQLSQSARLGALGKFRSGSRDILVATDV--------------------- 348
Query: 364 KHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPD 423
RG+D V V+NF++P ++ Y+HR+GRT RA +G ++S+V+
Sbjct: 349 ------------AARGLDIPAVDLVLNFDLPSDSKTYIHRVGRTARAGKSGRAISVVTQY 396
Query: 424 EMKIFEEIKSFVG 436
E++I++ I++ +G
Sbjct: 397 EVEIWQRIEAALG 409
>gi|149927779|ref|ZP_01916031.1| putative ATP-dependent RNA helicase [Limnobacter sp. MED105]
gi|149823605|gb|EDM82835.1| putative ATP-dependent RNA helicase [Limnobacter sp. MED105]
Length = 617
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 130/411 (31%), Positives = 199/411 (48%), Gaps = 48/411 (11%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF+++GL L+ ALN I PTL+QQ +PL +G D++ ++TGSGKTF +LLP++H
Sbjct: 2 SFDDMGLAAPLLQALNALNITAPTLVQQEVVPLGKDGGDLMVSSQTGSGKTFGFLLPVMH 61
Query: 87 RLF-NESSPKSKLA-PAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
R+ E SP LA P LVL PTREL QQV + + L++ KG ++V + MP
Sbjct: 62 RMMTGEQSPMEMLAGPECLVLCPTRELAQQVSQDAINLVKFTKG---VRVATVVGGMPYG 118
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
A+L G IV+ TPG + G L ++ L++DEAD +L G+ +DL+A
Sbjct: 119 KQMASLRG-ARIVVGTPGRLLDLAQQGKLNLS----TVTTLIVDEADRMLDLGFSEDLEA 173
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264
+ + Q L+ SAT + + L + I++NP + + + ++ K W
Sbjct: 174 IDQLCGNRIQTLMFSATFAKRIIGLAENIMNNPKRIEMAAQNEANTDIAQK---LMWADN 230
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
+ L L ++VQ A++FT+T A L L G+++ L+ +PQ R
Sbjct: 231 RGHKRKLLNHWLEHPDMVQ--AVVFTSTQIDAENLARDLADEGVRACALHGGMPQVVRNR 288
Query: 325 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 384
L G L+ATD RG+D
Sbjct: 289 RLASVRKGDIKVLVATDV---------------------------------AARGLDVPA 315
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ VIN+ MP + YVHRIGRTGRA +G +V+L ++ I+ F+
Sbjct: 316 ISHVINYGMPMKSEDYVHRIGRTGRAGRSGVAVTLAEACDIISVRGIERFI 366
>gi|425080638|ref|ZP_18483735.1| ATP-dependent RNA helicase rhlE [Klebsiella pneumoniae subsp.
pneumoniae WGLW2]
gi|428933930|ref|ZP_19007468.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae JHCK1]
gi|405605773|gb|EKB78777.1| ATP-dependent RNA helicase rhlE [Klebsiella pneumoniae subsp.
pneumoniae WGLW2]
gi|426304047|gb|EKV66201.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae JHCK1]
Length = 451
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 138/416 (33%), Positives = 209/416 (50%), Gaps = 60/416 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF+ LGL+ ++ A+ ++G +PT IQQ +IP +L+G+D++A A+TG+GKT + LPLL
Sbjct: 2 SFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 87 RL-FNESSPKSKLAPAALVLVPTRELCQQV------YSEVMALIELCKGQVQLKVVQLTS 139
RL NE K + AL+L PTREL QV YS+ + + L V V +
Sbjct: 62 RLILNEPHAKGRRPVRALILTPTRELAAQVGENVRDYSKYLNIRSL----VVFGGVSINP 117
Query: 140 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE 199
M L G DI++ATPG + Q+ D ++ILVLDEAD +L G+
Sbjct: 118 QM------MKLRGGVDILVATPGRLLDLEH----QNAVSLDKVEILVLDEADRMLDMGFI 167
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
D++ + A +P Q LL SAT S ++ L + +LHNP EV + + + Q
Sbjct: 168 HDIRRVLAKLPARRQNLLFSATFSDEIKGLAEKLLHNPL-----EVEVARRNTASEQITQ 222
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+ ++++ +L+ L E ++ L+FT T A L L K GI+SA ++ Q
Sbjct: 223 H-VHFVDKNRKRELLSQLIGEGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQ 281
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
+R L +F +G L+ATD RG
Sbjct: 282 GARTRALADFKSGGIRVLVATDIA---------------------------------ARG 308
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+D + + V+N+E+P YVHRIGRTGRA TG ++SLV DE K+ +I+ +
Sbjct: 309 LDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLL 364
>gi|172061636|ref|YP_001809288.1| DEAD/DEAH box helicase [Burkholderia ambifaria MC40-6]
gi|171994153|gb|ACB65072.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MC40-6]
Length = 479
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 142/412 (34%), Positives = 200/412 (48%), Gaps = 51/412 (12%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SFE LGL LV A+N+ G PT IQQ +IP +L G D++A A+TG+GKT + LP+L
Sbjct: 2 SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 87 RL--FNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
RL + +K A AL+L PTREL QV V A + K L+ + + +
Sbjct: 62 RLHTYYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYVK----LRSTVMFGGVSIN 117
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLK 203
AL DIV+ATPG + +Q K+ +L ILVLDEAD +L G+ D+K
Sbjct: 118 PQIDALKRGVDIVVATPGRLLDH-----MQQKTIDLSNLDILVLDEADRMLDMGFIHDIK 172
Query: 204 ALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWIS 263
+ A +P Q LL SAT S ++ L +L +P ++ + + V K I
Sbjct: 173 RVLAKLPPQRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAESVAQK------IH 226
Query: 264 CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+RD+ +LT L E + L+FT T A RL L K GI + ++ Q++R
Sbjct: 227 PVDRDRKRELLTHLIREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSART 286
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
L EF + L+ATD RGID
Sbjct: 287 RALAEFKSSTLQVLVATDI---------------------------------AARGIDID 313
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ V+NF++P YVHRIGRTGRA TG +VSLV DE ++ +I+ +
Sbjct: 314 QLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDIERLI 365
>gi|320038649|gb|EFW20584.1| ATP-dependent rRNA helicase RRP3 [Coccidioides posadasii str.
Silveira]
Length = 474
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 138/434 (31%), Positives = 220/434 (50%), Gaps = 52/434 (11%)
Query: 9 SKEVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVA 68
S E +E+ EA KSF++LG+ L A + G + PT IQ SIPL L+G+D++
Sbjct: 31 SLEETPGNDEKIEATTTKSFKDLGIIDSLCEACDSLGYKAPTQIQAESIPLALQGRDLIG 90
Query: 69 RAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKG 128
A+TGSGKT A+ LP+L L ++ P+S LVL PTREL Q+ + AL L
Sbjct: 91 LAETGSGKTAAFALPILQALMDK--PQSMF---GLVLAPTRELAYQISQQFEALGSL--- 142
Query: 129 QVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVL 187
+ ++ + M AL P I++ATPG + L +K FS SLK LV+
Sbjct: 143 -ISVRCAVIVGGMDMVSQAIALGKKPHIIVATPGRLLDHLE----NTKGFSLRSLKYLVM 197
Query: 188 DEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGD 247
DEAD LL + L + V+P+ + L SAT SS V+ L++ L NP ++ V
Sbjct: 198 DEADRLLDLDFGPILDKILKVLPKERRTYLFSATMSSKVESLQRASLSNPLRVS---VSS 254
Query: 248 VKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFG 307
K + + +Q I + K +Y++ LL E + ++FT T++ RL L G
Sbjct: 255 NKYQTVSTLLQNCLI-IPHKHKDIYLIYLLN-EFPGQSVIVFTRTVNETQRLANLLRALG 312
Query: 308 IKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPK 367
+ L+ +L Q++RL L +F + + L+ATD
Sbjct: 313 FGAIPLHGQLSQSARLGALGKFRSRSRNILVATDV------------------------- 347
Query: 368 AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 427
RG+D +V V+N+++P ++ Y+HR+GRT RA +G + SLV+ +++I
Sbjct: 348 --------AARGLDIPSVDLVLNYDLPSDSKTYIHRVGRTARAGKSGRAFSLVTQYDVEI 399
Query: 428 FEEIKSFVGDDENE 441
++ I++ +G + +E
Sbjct: 400 WQRIEAALGKELDE 413
>gi|425769747|gb|EKV08230.1| ATP-dependent RNA helicase , putative [Penicillium digitatum Pd1]
gi|425771396|gb|EKV09840.1| ATP-dependent RNA helicase , putative [Penicillium digitatum PHI26]
Length = 494
Score = 188 bits (478), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 131/424 (30%), Positives = 210/424 (49%), Gaps = 52/424 (12%)
Query: 19 EAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTF 78
E E K+F+ELGL L A +K G + PT IQ SIPL L+G+D++ A+TGSGKT
Sbjct: 65 ETEPSAPKTFKELGLIDSLCEACDKMGYKAPTPIQSESIPLALQGRDIIGLAETGSGKTA 124
Query: 79 AYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLT 138
+++LP+L L + P LV+ PTREL Q+ +L + ++ L
Sbjct: 125 SFVLPILQALMEKPQPF-----FGLVMAPTRELAYQISLACESL----GATINVRSTTLV 175
Query: 139 SSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYG 197
M AL P I++ATPG + L +K FS +LK LV+DEAD LL
Sbjct: 176 GGMDMVPQSIALGKKPHIIVATPGRLLDHLE----NTKGFSLRNLKFLVMDEADRLLDMD 231
Query: 198 YEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNV 257
+ L + V+PR + L SAT SS V+ L++ L NP +++ E +
Sbjct: 232 FGPILDKILKVLPRERRTFLFSATLSSKVESLQRASLSNPARVSISSSKYATVETL---- 287
Query: 258 QQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAEL 317
QQ +I + K +Y++ LL E + + +IF T+ R+ L G + L+ ++
Sbjct: 288 QQTYILRPYKHKDIYLVYLLH-EFIGQSVIIFMRTVHETQRVAFLLRGLGFGAIPLHGQM 346
Query: 318 PQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVV 377
Q++RL L +F + + L+ATD
Sbjct: 347 SQSARLGALGKFRSKSREILVATD---------------------------------VAA 373
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
RG+D +V V+NF++P ++ Y+HR+GRT RA +G ++S V+ +++I++ I++ +G
Sbjct: 374 RGLDIPSVDCVLNFDLPTDSKTYIHRVGRTARAGKSGTAISFVTQYDVEIWQRIEAAMGK 433
Query: 438 DENE 441
+ E
Sbjct: 434 ELAE 437
>gi|124249330|ref|NP_694705.2| probable ATP-dependent RNA helicase DDX27 [Mus musculus]
gi|341940504|sp|Q921N6.3|DDX27_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX27; AltName:
Full=DEAD box protein 27
gi|74140985|dbj|BAE22077.1| unnamed protein product [Mus musculus]
gi|74210620|dbj|BAE23664.1| unnamed protein product [Mus musculus]
gi|148674548|gb|EDL06495.1| mCG14602, isoform CRA_c [Mus musculus]
Length = 760
Score = 188 bits (478), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 142/417 (34%), Positives = 200/417 (47%), Gaps = 49/417 (11%)
Query: 17 EEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGK 76
E+ +E ++ SF+++ L L+ A+ G ++PT IQ+A IP+ L GKD+ A A TG+GK
Sbjct: 175 EDASEYDKSLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGK 234
Query: 77 TFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQ 136
T A+ LP+L RL + P+ LVLVPTREL QV+S L + C L V
Sbjct: 235 TAAFALPVLERLIYK--PRQAAVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGG 292
Query: 137 LTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLS 195
L + LRAA PDI+IATPG + L SF S+++L+LDEAD +L
Sbjct: 293 LDVKSQEAALRAA----PDILIATPGRLIDHLHN----CPSFHLSSIEVLILDEADRMLD 344
Query: 196 YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK 255
+E+ +K + + Q +L SAT + +V L + L NP + + D V P
Sbjct: 345 EYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTD----VAPF 400
Query: 256 NVQQFW-ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILN 314
Q+F I + I+ L + ++FT T A R+ + L G++ L+
Sbjct: 401 LRQEFIRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLLGLQVGELH 460
Query: 315 AELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEF 374
L Q RL L F D L+ATD
Sbjct: 461 GNLSQTQRLEALRRFKDEQIDILVATD--------------------------------- 487
Query: 375 GVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 431
RG+D + V TVINF MP YVHR+GRT RA G SVSLV +E K+ +EI
Sbjct: 488 VAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEI 544
>gi|297800452|ref|XP_002868110.1| hypothetical protein ARALYDRAFT_493213 [Arabidopsis lyrata subsp.
lyrata]
gi|297313946|gb|EFH44369.1| hypothetical protein ARALYDRAFT_493213 [Arabidopsis lyrata subsp.
lyrata]
Length = 790
Score = 188 bits (478), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 138/411 (33%), Positives = 189/411 (45%), Gaps = 47/411 (11%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF EL L L+ A G +KPT IQ A IPL L G+D+ A A TGSGKT A+ LP L
Sbjct: 171 SFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLE 230
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
RL PK A L+L PTREL Q++S + L + +K + + +
Sbjct: 231 RLLFR--PKRVFATRVLILTPTRELAVQIHSMIQKLAQF----TDIKCGLIVGGLSVREQ 284
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
L PDIV+ATPG M L + D L +L+LDEAD LL G+ ++ L
Sbjct: 285 EVVLRSMPDIVVATPGRMIDHLRNSMSVD---LDDLAVLILDEADRLLQTGFATEITELV 341
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ-FWISCS 265
+ P+ Q +L SAT + +V +L KL L+ P L+ D P ++ I +
Sbjct: 342 RLCPKRRQTMLFSATMTEEVKELVKLSLNKPLRLS----ADPSARRPPGLTEEVVRIRRT 397
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
+L L + K +IF+ T A RLK+ G+K+A L+ L Q RL
Sbjct: 398 REANQEAVLLSLCTRTFKSKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDS 457
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
LE F D+LIATD RG+D V
Sbjct: 458 LELFRKQEVDFLIATD---------------------------------VAARGLDIIGV 484
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
TVIN+ P+ YVHR+GRT RA G +V+ V+ + + + I VG
Sbjct: 485 QTVINYACPREIDSYVHRVGRTARAGREGYAVTFVTDSDRSLLKVIAKKVG 535
>gi|421554967|ref|ZP_16000906.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 98008]
gi|402332120|gb|EJU67451.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 98008]
Length = 462
Score = 188 bits (478), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 129/412 (31%), Positives = 202/412 (49%), Gaps = 55/412 (13%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F +L LD ++ A++ +G + PT IQ +IP LEG+D++A A+TGSGKT A+LLP L R
Sbjct: 5 FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
L S K P ALVL PTREL QV +A K + V +
Sbjct: 65 LTKRSEKPGK-GPRALVLTPTRELAAQVEKNALA---YAKNMRWFRTVSIVGGASFGYQT 120
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
AL+ P D+++ATPG + + +G + F+ L++L+LDEAD +L G+ DD++ +
Sbjct: 121 RALSKPVDLIVATPGRLMDLMQSGKV---DFA-RLEVLILDEADRMLDMGFIDDIETIVE 176
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE- 266
P Q LL SAT V KL + + +P I+ + V D +++ + C +
Sbjct: 177 ATPEDRQTLLFSATWDGAVGKLARKLTKDPEIIEVERVDD------QGKIEEQLLYCDDM 230
Query: 267 --RDKLL-YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+++LL +IL ++ + +IFT+T M + L + G + L+ ++PQ R
Sbjct: 231 RHKNRLLDHILRDANID----QCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRN 286
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
L + G L+ATD RGID
Sbjct: 287 RTLMDLRKGRCKILVATDV---------------------------------AARGIDVP 313
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ VIN+++P+ A YVHRIGRTGRA TG +++ +E +I+ ++
Sbjct: 314 TITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYI 365
>gi|421542668|ref|ZP_15988775.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM255]
gi|402317498|gb|EJU53036.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM255]
Length = 462
Score = 188 bits (478), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 129/409 (31%), Positives = 198/409 (48%), Gaps = 49/409 (11%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F +L LD ++ A++ +G + PT IQ +IP LEG+D++A A+TGSGKT A+LLP L R
Sbjct: 5 FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
L S K P ALVL PTREL QV +A K + V +
Sbjct: 65 LTKRSEKPGK-GPRALVLTPTRELAAQVEKNALA---YAKNMRWFRTVSIVGGASFGYQT 120
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
AL+ P D+++ATPG + + +G K + L++L+LDEAD +L G+ DD++ +
Sbjct: 121 RALSKPVDLIVATPGRLMDLMQSG----KVDFERLEVLILDEADRMLDMGFIDDIETIVE 176
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE- 266
P Q LL SAT V KL + + +P I+ + V D +++ + C +
Sbjct: 177 ATPSDRQTLLFSATWDGAVGKLARKLTKDPEIIEVERVDD------QGKIEEQLLYCDDM 230
Query: 267 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
R K I +L+ + + +IFT+T M + L + G + L+ ++PQ R L
Sbjct: 231 RHKNRLIDHILRDADID-QCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTL 289
Query: 327 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 386
+ G L+ATD RGID +
Sbjct: 290 MDLRKGRCKILVATDV---------------------------------AARGIDVPTIT 316
Query: 387 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
VIN+++P+ A YVHRIGRTGRA TG +++ +E +I+ ++
Sbjct: 317 HVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYI 365
>gi|145300478|ref|YP_001143319.1| DEAD-box ATP dependent DNA helicase [Aeromonas salmonicida subsp.
salmonicida A449]
gi|418362912|ref|ZP_12963530.1| DEAD-box ATP dependent DNA helicase [Aeromonas salmonicida subsp.
salmonicida 01-B526]
gi|142853250|gb|ABO91571.1| ATP-dependent RNA helicase, DEAD box family [Aeromonas salmonicida
subsp. salmonicida A449]
gi|356685918|gb|EHI50537.1| DEAD-box ATP dependent DNA helicase [Aeromonas salmonicida subsp.
salmonicida 01-B526]
Length = 417
Score = 188 bits (478), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 139/414 (33%), Positives = 206/414 (49%), Gaps = 57/414 (13%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF EL L RL L++ G PT IQ +IP+IL G+D++A A+TG+GKT A++LPLL
Sbjct: 5 SFAELALSPRLQQTLSELGYAAPTPIQARAIPVILTGRDLMAGAQTGTGKTAAFVLPLLE 64
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
+L + + ALVLVPTREL QV+ V + +G + A+ +
Sbjct: 65 QLMQHPASDTARPIRALVLVPTRELAVQVFDSV---VRYGQGTGLTSALVYGGVSIAAQV 121
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
A AG D++IATPG + L G L + S LV DEAD +L G+ D++KAL
Sbjct: 122 EALQAG-VDLLIATPGRLLDHLRQGALSLEHLSH----LVFDEADRMLDMGFMDEIKALL 176
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQFW 261
IP Q LL SAT ++ L +++L +P ++ EV P+N V+Q
Sbjct: 177 KQIPADRQTLLFSATCDDNLFALSRVLLRDPELI----------EVAPRNTTAAEVEQRV 226
Query: 262 ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 321
+ K+ + L+K++ LIF+ T A +L L K GI + + +L Q +
Sbjct: 227 YAVDGERKVALVEHLIKVK-GWAPVLIFSRTRQGADKLAQQLGKAGINALAFHGDLSQGA 285
Query: 322 RLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGID 381
R +L F AG L+ATD RG+D
Sbjct: 286 REKVLLAFRAGTLQALVATDVA---------------------------------ARGLD 312
Query: 382 FKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+++ VIN E P A YVHRIGRTGRA N G +++L SP++ + E++++ +
Sbjct: 313 ILDLNYVINLEFPFVAEDYVHRIGRTGRAGNKGLAITLFSPEDAPLLEKVEAVL 366
>gi|346324903|gb|EGX94500.1| ATP-dependent RNA helicase (Drs1), putative [Cordyceps militaris
CM01]
Length = 769
Score = 188 bits (478), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 129/403 (32%), Positives = 198/403 (49%), Gaps = 49/403 (12%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF+ + L ++ L G KPT IQ +IP+ L GKD+V A TGSGKT A+++P+L
Sbjct: 252 SFQAMSLSRPILRGLTNVGFTKPTPIQSKTIPIALMGKDIVGGAVTGSGKTGAFIIPILE 311
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
RL PK +VL PTREL Q ++ L + L V L+ + ++L
Sbjct: 312 RLL--YRPKKIPTTRVVVLTPTRELAIQCHAVATKLAAHTDIKFTLAVGGLSLKVQEAEL 369
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKAL 205
R PD++IATPG + S SF D+++ILVLDEAD +L G+ D+L +
Sbjct: 370 RLR----PDVIIATPGRFIDHMR----NSASFPIDTVEILVLDEADRMLEDGFADELNEI 421
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-WISC 264
+P+ Q +L SAT +S VD+L +L ++ P + + D + + VQ+F +
Sbjct: 422 LTTLPKSRQTMLFSATMTSTVDRLIRLGMNKPARVMV----DSQKRTVGTLVQEFVRLRP 477
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
+K + LT L L ++ ++F A ++ G+ A L+ + Q R+
Sbjct: 478 GRENKRMGYLTHLCKTLYTERVIVFFRQKKDAHEARIIFSILGMTCAELHGSMSQTGRIE 537
Query: 325 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 384
+E F G +YL+ATD L S RG+D +
Sbjct: 538 SVEAFRDGKVNYLLATD----------------------------LAS-----RGLDIRG 564
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 427
V TVIN+E PQ+ YVHR+GRT RA G +++L + + K+
Sbjct: 565 VDTVINYEAPQSLEIYVHRVGRTARAGRKGVALTLAAESDRKV 607
>gi|67527984|ref|XP_661837.1| hypothetical protein AN4233.2 [Aspergillus nidulans FGSC A4]
gi|74681080|sp|Q5B5E7.1|RRP3_EMENI RecName: Full=ATP-dependent rRNA helicase rrp3
gi|40740142|gb|EAA59332.1| hypothetical protein AN4233.2 [Aspergillus nidulans FGSC A4]
gi|259481158|tpe|CBF74430.1| TPA: ATP-dependent rRNA helicase rrp3 (EC 3.6.1.-)
[Source:UniProtKB/Swiss-Prot;Acc:Q5B5E7] [Aspergillus
nidulans FGSC A4]
Length = 465
Score = 188 bits (478), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 133/423 (31%), Positives = 208/423 (49%), Gaps = 56/423 (13%)
Query: 11 EVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARA 70
E + + EE A A KSF+ELG+ +L A G + PT IQ +IPL LEG+DV+ A
Sbjct: 34 ETQTSGEEPAPA---KSFKELGIIDQLCEACENMGYKAPTPIQSQAIPLALEGRDVIGLA 90
Query: 71 KTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQV 130
+TGSGKT A+ LP+L L +P++ LVL PTREL Q+ E +
Sbjct: 91 ETGSGKTAAFALPMLQALME--APQTLF---GLVLAPTRELAYQISQA----FETLGSTI 141
Query: 131 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDE 189
++ + M AL P I++ATPG + L +K FS +LK L +DE
Sbjct: 142 GVRCAVIVGGMDMVAQSIALGKKPHIIVATPGRLLDHLE----NTKGFSLRNLKYLAIDE 197
Query: 190 ADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVK 249
AD LL + + L + ++PR L SAT S+ V+ L++ L NP +++ K
Sbjct: 198 ADRLLDMDFGESLDKIIRILPRTRHTYLFSATMSTKVESLQRASLSNPVRVSVSS----K 253
Query: 250 DEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIK 309
+ + +Q +I + K LY++ LL E + A+IFT T+ R+ L G
Sbjct: 254 YQTV-STLQSSYICIPHKHKNLYLVYLLN-EFAGQSAIIFTTTVHETQRVAFMLRALGFG 311
Query: 310 SAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAK 369
+ L+ +L Q++RL L +F + D L+ATD
Sbjct: 312 AIPLHGQLSQSARLGALGKFRSRSRDILVATDV--------------------------- 344
Query: 370 LDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFE 429
RG+D +V V NF++P ++ Y+HR+GRT RA +G ++S V+ +++++
Sbjct: 345 ------AARGLDIPSVDVVFNFDLPMDSKTYIHRVGRTARAGKSGVAISFVTQYDVEVWL 398
Query: 430 EIK 432
I+
Sbjct: 399 RIE 401
>gi|448241070|ref|YP_007405123.1| ATP-dependent RNA helicase [Serratia marcescens WW4]
gi|445211434|gb|AGE17104.1| ATP-dependent RNA helicase [Serratia marcescens WW4]
Length = 459
Score = 188 bits (478), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 136/416 (32%), Positives = 205/416 (49%), Gaps = 60/416 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SFE LGL +V A+ ++G ++PT IQ+ +IP++LEG+D++A A+TG+GKT + LPLL
Sbjct: 2 SFETLGLSAEIVRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 87 RLFNESSPKSKLAPA-ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASD 145
L P P AL+L PTREL Q+ V A + ++L+ + + + +
Sbjct: 62 LLSKHDHPVKGRRPVRALILTPTRELAAQIGENVDAYSK----HLRLRSLVVFGGVSINP 117
Query: 146 LRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD--SLKILVLDEADLLLSYGYEDDLK 203
L G DI++ATPG + L+ ++ D ++ILVLDEAD +L G+ D++
Sbjct: 118 QMMKLRGGVDILVATPGRLLD------LEHQNAVDLSKIEILVLDEADRMLDMGFIHDIR 171
Query: 204 ALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWIS 263
+ A +P Q LL SAT S D+ L +LHNP + EV +N I
Sbjct: 172 RVLAKLPAKRQNLLFSATFSDDIKALANKLLHNPASV----------EVARRNTASEQIE 221
Query: 264 CS----ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
S ++ + +L+ + E K+ L+FT T A L L K GI +A ++ Q
Sbjct: 222 QSVHFVDKKRKRELLSQMIGEGDWKQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQ 281
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
+R L +F G L+ATD RG
Sbjct: 282 GARTRALADFKDGRIRVLVATDIA---------------------------------ARG 308
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+D + V+N+E+P YVHRIGRTGRA TG ++SLV DE K+ +I+ +
Sbjct: 309 LDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDIERLL 364
>gi|323527279|ref|YP_004229432.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
CCGE1001]
gi|323384281|gb|ADX56372.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1001]
Length = 530
Score = 188 bits (478), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 143/413 (34%), Positives = 204/413 (49%), Gaps = 52/413 (12%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF+ LGL LV A+++ G PT IQ +IP +L G D++A A+TG+GKT + LP+L
Sbjct: 2 SFDSLGLSEPLVRAVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 87 RLFNE---SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPA 143
RL + ++ K A AL+L PTREL QV V A + K LK + +
Sbjct: 62 RLHSMPPLAAASGKRAVRALILTPTRELAAQVEESVRAYGKYLK----LKSTVMFGGVGI 117
Query: 144 SDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS-LKILVLDEADLLLSYGYEDDL 202
+ AL DIV+ATPG + L +Q K+ S L+ILVLDEAD +L G+ D+
Sbjct: 118 NPQIGALKSGVDIVVATPG---RLLDH--MQQKTIDLSHLEILVLDEADRMLDMGFIHDI 172
Query: 203 KALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWI 262
K + A +P Q LL SAT S ++ L +L +P ++ + + V K I
Sbjct: 173 KRVLAKLPPKRQNLLFSATFSDEIKALADNLLDSPALIEVARRNTTAETVAQK------I 226
Query: 263 SCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 322
+RDK +LT L + + L+FT T A RL L K GI + ++ Q++R
Sbjct: 227 HPVDRDKKRELLTHLIKQHNWFQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSAR 286
Query: 323 LHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDF 382
L EF G L+ATD RGID
Sbjct: 287 TRALAEFKDGTLQVLVATDI---------------------------------AARGIDI 313
Query: 383 KNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ V+NF++P YVHRIGRTGRA TG +VSLV DE+++ ++I+ +
Sbjct: 314 DQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLLKDIEKLI 366
>gi|255935375|ref|XP_002558714.1| Pc13g02750 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211583334|emb|CAP91344.1| Pc13g02750 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 493
Score = 188 bits (478), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 134/435 (30%), Positives = 217/435 (49%), Gaps = 52/435 (11%)
Query: 8 PSKEVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVV 67
P+ + +E E + K+F+ELGL L A +K G + PT IQ SIPL L+G+D++
Sbjct: 53 PNVKDATSETEPSATTAPKTFKELGLIDSLCEACDKMGYKAPTPIQSESIPLALQGRDII 112
Query: 68 ARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCK 127
A+TGSGKT +++LP+L L + P+S LVL PTREL Q+ +L
Sbjct: 113 GLAETGSGKTASFVLPILQALMEK--PQSFF---GLVLAPTRELAYQISLACESL----G 163
Query: 128 GQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILV 186
+ ++ L M AL P I++ATPG + L +K FS SLK LV
Sbjct: 164 ATINVRSTTLVGGMDMVPQSIALGKKPHIIVATPGRLLDHLE----NTKGFSLRSLKFLV 219
Query: 187 LDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVG 246
+DEAD LL + L + V+PR + L SAT SS V+ L++ L NP +++
Sbjct: 220 MDEADRLLDMDFGPILDKILKVLPRERRTFLFSATLSSKVESLQRASLSNPARVSISSSK 279
Query: 247 DVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKF 306
E + QQ ++ + K +Y++ LL E + + +IF T+ R+ L
Sbjct: 280 YATVETL----QQTYLLRPYKHKDIYLVYLLH-EFIGQSVIIFMRTVHETQRVAFLLRGL 334
Query: 307 GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHP 366
G + L+ ++ Q++RL L +F + + L+ATD
Sbjct: 335 GFGAIPLHGQMSQSARLGALGKFRSKSREILVATDV------------------------ 370
Query: 367 KAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMK 426
RG+D +V V+NF++P ++ Y+HR+GRT RA +G ++S V+ +++
Sbjct: 371 ---------AARGLDIPSVDCVLNFDLPTDSKTYIHRVGRTARAGKSGTAISFVTQYDVE 421
Query: 427 IFEEIKSFVGDDENE 441
I++ I++ +G + E
Sbjct: 422 IWQRIEAAMGKELAE 436
>gi|410611270|ref|ZP_11322369.1| ATP-dependent RNA helicase rhlB [Glaciecola psychrophila 170]
gi|410169121|dbj|GAC36258.1| ATP-dependent RNA helicase rhlB [Glaciecola psychrophila 170]
Length = 438
Score = 188 bits (478), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 135/411 (32%), Positives = 205/411 (49%), Gaps = 52/411 (12%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF +LGL +++ A+ KG P+ IQ +IP +L+G DV+A A+TG+GKT + LP+LH
Sbjct: 2 SFADLGLSPKILSAVASKGYTTPSPIQAKAIPAVLQGSDVMAAAQTGTGKTAGFTLPILH 61
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIE--LCKGQVQLKVVQLTSSMPAS 144
L S + A AL+L PTREL Q+ V + K V V + M
Sbjct: 62 LLSKGQSARPNQA-RALILTPTRELAAQIAESVQTYGKDLPLKSAVVFGGVGINPQM--I 118
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
LR + DI++ATPG + + ++ FS+ L+ILV+DEAD +L G+ D+K
Sbjct: 119 RLRKGV----DILVATPGRLLDLYNQNAVK---FSE-LEILVMDEADRMLDMGFIHDIKK 170
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264
+ ++P+ Q L+ SAT S D+ KL K +++NP +++ D V + W+
Sbjct: 171 IIKLLPQKRQNLMFSATFSDDIRKLAKGLVNNPVEISVSPANTTVDLV------EQWVYP 224
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
++ K +LT L E ++ L+F+ T A R+ LE GI SA ++ Q +R
Sbjct: 225 VDKSKKSQLLTHLIKENDWQQVLVFSRTKHGANRIAKQLEAHGISSAAIHGNKSQGARTK 284
Query: 325 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 384
L +F G LIATD RG+D
Sbjct: 285 ALADFKQGKVKALIATDIA---------------------------------ARGLDIDQ 311
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ V+NF++P YVHRIGRTGRA TG ++S+V+ DE K +I+ +
Sbjct: 312 LPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAISMVTQDEFKELVDIEILI 362
>gi|254805163|ref|YP_003083384.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
alpha14]
gi|254668705|emb|CBA06474.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
alpha14]
Length = 462
Score = 188 bits (477), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 129/412 (31%), Positives = 200/412 (48%), Gaps = 55/412 (13%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F +L LD ++ A++ +G + PT IQ +IP LEG+D++A A+TGSGKT A+LLP L R
Sbjct: 5 FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
L S K P ALVL PTREL QV +A K + V +
Sbjct: 65 LTKRSEKPGK-GPRALVLTPTRELAAQVEKNALA---YAKNMRWFRTVSIVGGASFGYQT 120
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
AL+ P D+++ATPG + + +G K L++L+LDEAD +L G+ DD++ +
Sbjct: 121 RALSKPVDLIVATPGRLMDLMQSG----KVDFGRLEVLILDEADRMLDMGFIDDIETIVE 176
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE- 266
P Q LL SAT V KL + + +P I+ + V D +++ + C +
Sbjct: 177 ATPTDRQTLLFSATWDGAVGKLARKLTKDPEIIEVERVDD------QGKIEEQLLYCDDM 230
Query: 267 --RDKLL-YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+++LL +IL ++ + +IFT+T M + L + G + L+ ++PQ R
Sbjct: 231 RHKNRLLDHILRDANID----QCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRN 286
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
L + G L+ATD RGID
Sbjct: 287 RTLMDLRKGRCKILVATDV---------------------------------AARGIDVP 313
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ VIN+++P+ A YVHRIGRTGRA TG +++ +E +I+ ++
Sbjct: 314 TITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYI 365
>gi|221200134|ref|ZP_03573177.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
CGD2M]
gi|221206713|ref|ZP_03579725.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
CGD2]
gi|221173368|gb|EEE05803.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
CGD2]
gi|221180373|gb|EEE12777.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
CGD2M]
Length = 480
Score = 188 bits (477), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 144/411 (35%), Positives = 199/411 (48%), Gaps = 49/411 (11%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SFE LGL LV A+N+ G PT IQQ +IP +L G D++A A+TG+GKT + LP+L
Sbjct: 2 SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 87 RL--FNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
RL F +K A AL+L PTREL QV V A + K L+ + + +
Sbjct: 62 RLHTFYTEHRSAKRAVRALILTPTRELAAQVEESVRAYSKYLK----LRSTVMFGGVSIN 117
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
AL DIV+ATPG + L ++ SD L ILVLDEAD +L G+ D+K
Sbjct: 118 PQIDALKRGVDIVVATPG---RLLDHMQQKTIDLSD-LDILVLDEADRMLDMGFIHDIKR 173
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264
+ A +P Q LL SAT S ++ L +L +P ++ + + V K I
Sbjct: 174 VLAKLPPRRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAETVAQK------IHP 227
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
+RD+ +LT L E + L+FT T A RL L K GI + ++ Q++R
Sbjct: 228 VDRDRKRELLTHLIREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTR 287
Query: 325 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 384
L EF L+ATD RGID
Sbjct: 288 ALAEFKNNTLQVLVATDI---------------------------------AARGIDIDQ 314
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ V+NF++P YVHRIGRTGRA TG +VSLV DE ++ +I+ +
Sbjct: 315 LPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDIERLI 365
>gi|302886563|ref|XP_003042171.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256723080|gb|EEU36458.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 490
Score = 188 bits (477), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 130/426 (30%), Positives = 214/426 (50%), Gaps = 54/426 (12%)
Query: 18 EEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKT 77
EE +K+F++LG++ L A + PT IQ+ SIP+ L+G+D++ A+TGSGKT
Sbjct: 57 EETPDAPKKTFKDLGVNDALCEACEALNYKYPTPIQEKSIPVALQGRDIIGLAETGSGKT 116
Query: 78 FAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQL 137
A+ LP+L L ++ P LVL PTREL Q+ AL L + L+ +
Sbjct: 117 AAFALPVLQALLDKPQPLF-----GLVLAPTRELATQIGQAFEALGSL----ISLRCAVI 167
Query: 138 TSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSY 196
+ AL P I++ATPG + L ++K FS +LK L++DEAD LL
Sbjct: 168 VGGLDMVPQAIALGKKPHIIVATPGRLVDHLE----KTKGFSLRTLKYLIMDEADRLLDM 223
Query: 197 GYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN 256
+ + + IPR + L SAT SS ++ L++ L +P ++ + K + +
Sbjct: 224 DFGPSIDKILKFIPRERRTYLFSATLSSKIESLQRASLRDPVRVS---ISSNKYQTVSTL 280
Query: 257 VQQF-WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNA 315
+Q + +I ++D Y++ L+ E K ++FT T+ R+ + L G + L+
Sbjct: 281 IQHYMFIPFPQKDT--YLVYLVN-EHTGKSTIVFTRTVWETQRVAILLRTLGFGAIPLHG 337
Query: 316 ELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFG 375
+L Q+SRL L +F AG D L+ATD
Sbjct: 338 QLSQSSRLGALNKFRAGTRDILVATDVA-------------------------------- 365
Query: 376 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
RG+D V V+N++MPQ++ Y+HR+GRT RA +G +++LV+ +++I+ I++ +
Sbjct: 366 -ARGLDIPKVDVVLNYDMPQDSKTYIHRVGRTARAGKSGVAINLVTQYDLEIYARIEAAL 424
Query: 436 GDDENE 441
G E
Sbjct: 425 GKKLTE 430
>gi|218768385|ref|YP_002342897.1| ATP-dependent RNA helicase [Neisseria meningitidis Z2491]
gi|385338217|ref|YP_005892090.1| putative ATP-dependent RNA helicase [Neisseria meningitidis WUE
2594]
gi|421550861|ref|ZP_15996862.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 69166]
gi|433471424|ref|ZP_20428810.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 68094]
gi|433475102|ref|ZP_20432443.1| helicase domain protein [Neisseria meningitidis 88050]
gi|433477812|ref|ZP_20435132.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 70012]
gi|433479923|ref|ZP_20437213.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 63041]
gi|433513686|ref|ZP_20470476.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 63049]
gi|433515857|ref|ZP_20472625.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 2004090]
gi|433517759|ref|ZP_20474505.1| helicase domain protein [Neisseria meningitidis 96023]
gi|433520141|ref|ZP_20476861.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 65014]
gi|433522082|ref|ZP_20478772.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 61103]
gi|433524325|ref|ZP_20480986.1| helicase domain protein [Neisseria meningitidis 97020]
gi|433526427|ref|ZP_20483057.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 69096]
gi|433528435|ref|ZP_20485044.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM3652]
gi|433530636|ref|ZP_20487225.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM3642]
gi|433532905|ref|ZP_20489468.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 2007056]
gi|433534653|ref|ZP_20491193.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 2001212]
gi|433539146|ref|ZP_20495622.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 70030]
gi|433541219|ref|ZP_20497671.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 63006]
gi|121052393|emb|CAM08725.1| putative ATP-dependent RNA helicase [Neisseria meningitidis Z2491]
gi|319410631|emb|CBY91000.1| putative ATP-dependent RNA helicase [Neisseria meningitidis WUE
2594]
gi|402329398|gb|EJU64759.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 69166]
gi|432208276|gb|ELK64254.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 68094]
gi|432210920|gb|ELK66875.1| helicase domain protein [Neisseria meningitidis 88050]
gi|432215477|gb|ELK71366.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 70012]
gi|432216262|gb|ELK72144.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 63041]
gi|432247218|gb|ELL02657.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 63049]
gi|432252783|gb|ELL08133.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 2004090]
gi|432253495|gb|ELL08839.1| helicase domain protein [Neisseria meningitidis 96023]
gi|432254863|gb|ELL10197.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 65014]
gi|432259153|gb|ELL14427.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 61103]
gi|432259569|gb|ELL14840.1| helicase domain protein [Neisseria meningitidis 97020]
gi|432261191|gb|ELL16448.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 69096]
gi|432265236|gb|ELL20432.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM3652]
gi|432266728|gb|ELL21910.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 2007056]
gi|432267143|gb|ELL22324.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM3642]
gi|432271395|gb|ELL26520.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 2001212]
gi|432273508|gb|ELL28606.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 70030]
gi|432277232|gb|ELL32281.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 63006]
Length = 462
Score = 188 bits (477), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 129/412 (31%), Positives = 202/412 (49%), Gaps = 55/412 (13%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F +L LD ++ A++ +G + PT IQ +IP LEG+D++A A+TGSGKT A+LLP L R
Sbjct: 5 FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
L S K P ALVL PTREL QV +A K + V +
Sbjct: 65 LTKRSEKPGK-GPRALVLTPTRELAAQVEKNALA---YAKNMRWFRTVSIVGGASFGYQT 120
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
AL+ P D+++ATPG + + +G + F+ L++L+LDEAD +L G+ DD++ +
Sbjct: 121 RALSKPVDLIVATPGRLMDLMQSGKV---DFA-RLEVLILDEADRMLDMGFIDDIETIVE 176
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE- 266
P Q LL SAT V KL + + +P I+ + V D +++ + C +
Sbjct: 177 ATPEDRQTLLFSATWDGAVGKLARKLTKDPEIIEVERVDD------QGKIEEQLLYCDDM 230
Query: 267 --RDKLL-YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+++LL +IL ++ + +IFT+T M + L + G + L+ ++PQ R
Sbjct: 231 RHKNRLLDHILRDADID----QCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRN 286
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
L + G L+ATD RGID
Sbjct: 287 RTLMDLRKGRCKILVATDV---------------------------------AARGIDVP 313
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ VIN+++P+ A YVHRIGRTGRA TG +++ +E +I+ ++
Sbjct: 314 TITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYI 365
>gi|340522166|gb|EGR52399.1| predicted protein [Trichoderma reesei QM6a]
Length = 482
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 131/415 (31%), Positives = 207/415 (49%), Gaps = 52/415 (12%)
Query: 23 EEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLL 82
EE K+F+ELG+ L A ++PT IQ +IP+ L+G+DV+ A+TGSGKT A+ L
Sbjct: 55 EEPKTFKELGIVDSLCEACESLNYKRPTAIQAKAIPVALQGRDVIGLAETGSGKTAAFAL 114
Query: 83 PLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMP 142
P+L L + P LVL PTREL Q+ AL L + L+ + +
Sbjct: 115 PILQALLEKPQPL-----FGLVLAPTRELAAQIGQSFEALGAL----ISLRCAVIVGGLD 165
Query: 143 ASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDD 201
AL P I++ATPG + L ++K FS SLK LV+DEAD LL +
Sbjct: 166 MVPQAIALGKKPHIIVATPGRLVDHLE----KTKGFSLRSLKYLVMDEADRLLDMDFGPS 221
Query: 202 LKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW 261
+ + IPR + L SAT SS V+ L++ L +P ++ V K + + + Q +
Sbjct: 222 IDKILKFIPRERRTYLFSATLSSKVESLQRASLRDPVRVS---VSSSKYQTV-STLLQHY 277
Query: 262 ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 321
I + K Y++ L+ E K +IFT T+ R+ + L G + L+ +L Q+S
Sbjct: 278 ILVPHKRKDTYLIYLVN-EFAGKSIIIFTRTVFETQRIAILLRTLGFGAIPLHGQLSQSS 336
Query: 322 RLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGID 381
RL L +F G + L+ATD RG+D
Sbjct: 337 RLGALNKFKGGSREILVATDVA---------------------------------ARGLD 363
Query: 382 FKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
V V+N ++PQ++ Y+HR+GRT RA +G ++++V+ +++I++ I++ +G
Sbjct: 364 IPAVDVVLNLDLPQDSKTYIHRVGRTARAGKSGIAINIVTQYDVEIYQRIEAALG 418
>gi|330923108|ref|XP_003300102.1| hypothetical protein PTT_11258 [Pyrenophora teres f. teres 0-1]
gi|311325897|gb|EFQ91780.1| hypothetical protein PTT_11258 [Pyrenophora teres f. teres 0-1]
Length = 516
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 139/428 (32%), Positives = 212/428 (49%), Gaps = 59/428 (13%)
Query: 17 EEEAEA------EEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARA 70
EEEAE E +K+F +LG+ L A + PT IQ +IPL LEG+DV+ A
Sbjct: 71 EEEAEPATTGADEVKKTFADLGIREELCDACENLKFKNPTPIQTQAIPLALEGRDVIGLA 130
Query: 71 KTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQV 130
+TGSGKT A++LP+L L + P L+L PTREL Q+ +V AL + +
Sbjct: 131 ETGSGKTAAFVLPILQSLLEKPQPL-----FGLILAPTRELAYQIAQQVDALGSI----I 181
Query: 131 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDE 189
+K L M AL+ P IV+ATPG + L +K FS LK +VLDE
Sbjct: 182 NVKCATLVGGMDMVPQAIALSKRPHIVVATPGRLLDHLEN----TKGFSLKHLKYMVLDE 237
Query: 190 ADLLLSYGYEDDLKALSAVIPR-GCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDV 248
AD LL + L + V+PR G L SAT SS V+ L++ L NP ++ +
Sbjct: 238 ADRLLDLDFGPVLDKILKVLPREGRHTYLFSATMSSKVENLQRAALQNPVRVS---ISSS 294
Query: 249 KDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGI 308
+V+ +Q++ + K LY++ LL + + +IFT T++ R+ + L G
Sbjct: 295 SHQVVSTLLQRYAF-IPHKYKDLYLIHLLN-DNIGHPTIIFTRTVNETQRIAVLLRALGF 352
Query: 309 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA 368
+ L+ +L Q++RL L +F + D L+ATD
Sbjct: 353 GAIPLHGQLSQSARLGALNKFKSKSRDILVATD--------------------------- 385
Query: 369 KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF 428
RG+D V ++NF++P ++ YVHR+GRT RA +G +VS V+ +++I+
Sbjct: 386 ------VAARGLDIPAVDLIVNFDLPSDSQTYVHRVGRTARAGKSGKAVSFVTQYDLEIW 439
Query: 429 EEIKSFVG 436
I+ +G
Sbjct: 440 LRIEHALG 447
>gi|261210866|ref|ZP_05925156.1| ATP-dependent RNA helicase [Vibrio sp. RC341]
gi|260839841|gb|EEX66441.1| ATP-dependent RNA helicase [Vibrio sp. RC341]
Length = 435
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 135/410 (32%), Positives = 207/410 (50%), Gaps = 50/410 (12%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F +LGL L H + + G Q PT IQ +IP+IL+G+DV+A A+TG+GKT +++LP+L +
Sbjct: 40 FSQLGLSDVLTHTVAQLGYQTPTQIQTQAIPVILQGRDVIAAAQTGTGKTASFVLPILEK 99
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
L + + K AL+LVPTREL QV +V E LK + + + +
Sbjct: 100 LRQGQTQRKKRV-RALILVPTRELAMQVAEKV----EQYGKATGLKGLAVFGGVDEQAQK 154
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
L D+++ATPG + Q + + ++++VLDEAD +L G+ + + +
Sbjct: 155 QRLIEGVDVLVATPGRLMDLYG----QRAVYFEEIEMVVLDEADRMLDMGFIESINKIID 210
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 267
+P Q LL SAT S V +L K +++PY +T+ ++ N+ Q W+ ++
Sbjct: 211 CLPNEVQFLLFSATLSRKVRELAKTAVNDPYEITI-----AANQASKSNISQ-WLITVDK 264
Query: 268 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 327
D +L+ L E +ALIF T A +L LEK GI++ ++ Q R +LE
Sbjct: 265 DTKSALLSHLITEQQWDQALIFIETKHGAAKLVTQLEKRGIQAEAFHSGRSQAIRAQLLE 324
Query: 328 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGV-VRGIDFKNVH 386
+F AG YL+AT GV RGID + +
Sbjct: 325 DFKAGKIKYLVAT----------------------------------GVAARGIDIEQLS 350
Query: 387 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
V+N+++P A YVHRIGRTGRA G ++S VS D K I+S +G
Sbjct: 351 RVVNYDLPFPADEYVHRIGRTGRADAVGEAISFVSKDNFKNLCMIESRLG 400
>gi|254507177|ref|ZP_05119314.1| superfamily II DNA and RNA helicase [Vibrio parahaemolyticus 16]
gi|219549887|gb|EED26875.1| superfamily II DNA and RNA helicase [Vibrio parahaemolyticus 16]
Length = 388
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 139/411 (33%), Positives = 210/411 (51%), Gaps = 52/411 (12%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F +LGL L A+ G KPT IQ +IP IL+G D++A A+TG+GKT +++LP+L +
Sbjct: 3 FAKLGLSQPLTQAIQSLGYSKPTTIQTKAIPAILQGDDLIAAAQTGTGKTASFVLPILEK 62
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQ-VQLKVVQLTSSMPASDL 146
L + + K AL+L PTREL QQ+ +V GQ + L + + +
Sbjct: 63 LAKGETQRKKRV-RALILTPTRELAQQIEQKVRDY-----GQNLSLTSLAMYGGVDEKPQ 116
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
+ AL DI+IATPG + L ++ F + +++LV+DEAD +L G+ DD+ +
Sbjct: 117 KQALIEGVDILIATPG---RLLDMYGKRAVHF-EEIEVLVMDEADRMLDMGFIDDINKIL 172
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
+P Q LL SAT S+ V L K +H+P+ E+ ++ KN++Q W+ +
Sbjct: 173 DRLPTDIQHLLFSATLSNKVRDLAKTAVHDPF-----EISIAANQASKKNIEQ-WLITVD 226
Query: 267 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
+DK +L+ + E +ALIF T A +L LEK GI++ ++ Q R +L
Sbjct: 227 KDKKSALLSHMIKENNWDQALIFIETKHGAAKLASQLEKRGIEAEAFHSGRSQAVRSKLL 286
Query: 327 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGV-VRGIDFKNV 385
+F AG Y+IAT GV RGID + +
Sbjct: 287 ADFKAGKIKYMIAT----------------------------------GVGARGIDIEGL 312
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
VIN+++P A YVHRIGRTGRA G ++S VS D K I++ +G
Sbjct: 313 TRVINYDLPFPADEYVHRIGRTGRADAQGEAISFVSKDNFKNLCMIEARLG 363
>gi|118351203|ref|XP_001008880.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
gi|89290647|gb|EAR88635.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
SB210]
Length = 643
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 146/499 (29%), Positives = 242/499 (48%), Gaps = 67/499 (13%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
++++LGL L+ A+ + + PT IQ +IP L+GKD++A + TGSGKT A+L+P+L
Sbjct: 191 TWQDLGLIKPLLKAVEEMQYEFPTNIQSLAIPAALQGKDLLASSLTGSGKTAAFLIPILQ 250
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
+ + SP + + AL++ PTREL Q+Y L + K + L + Q S+M +
Sbjct: 251 KFY--RSPFTNYSK-ALIVTPTRELAFQIYEVFTKLNKYTKLRACLVIGQ--SAMQKQE- 304
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKAL 205
A L G P+++IATPG + L S+S D+L++L+ DEAD LL G+E + +
Sbjct: 305 -AELRGNPEVIIATPGRLIDHLQN----SRSIDLDNLEVLIFDEADKLLDLGFEAAAQNI 359
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
R Q LL SAT +S+V+KL + L P + G D++I K +
Sbjct: 360 VENCNRERQTLLFSATLTSEVNKLIDIALRKPIRIQANPDGQTNDKLIQK-----MLRIQ 414
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
D L + + +++ +IF T R+ + FG+K L+ +L QN R+
Sbjct: 415 HEDFREAALLAIAAKYYKERTIIFFKTKRQTHRMAIIFGLFGLKVCELHGDLTQNQRIQA 474
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
+F G + YL+ATD L S RG+D + V
Sbjct: 475 FSDFKEGKYQYLMATD----------------------------LAS-----RGLDIQGV 501
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNI 445
VINFE+P Y+HR+GRT RA N G S+++ E+K +++ EN+D
Sbjct: 502 KAVINFELPSEVTRYIHRVGRTARAGNEGISLTIGLDAELKTLKKMLK-----ENKDK-- 554
Query: 446 IAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDL 505
+ L+ ++ + + ++V + V K+ E + LR KA E+ +
Sbjct: 555 MMEKVSLSVETLQKYKEKIQNVEREVVKVLEEEQAERQLR---------KAEMELQKAE- 604
Query: 506 DLLKHDKDLSKKPPASHLR 524
+++KH ++ KP + +
Sbjct: 605 NMIKHKDEIMNKPKKTWFQ 623
>gi|206579391|ref|YP_002239559.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae 342]
gi|290510541|ref|ZP_06549911.1| ATP-dependent RNA helicase RhlE [Klebsiella sp. 1_1_55]
gi|206568449|gb|ACI10225.1| putative ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae
342]
gi|289777257|gb|EFD85255.1| ATP-dependent RNA helicase RhlE [Klebsiella sp. 1_1_55]
Length = 451
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 137/416 (32%), Positives = 210/416 (50%), Gaps = 60/416 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF+ LGL+ ++ A+ ++G +PT IQQ +IP +++G+D++A A+TG+GKT + LPLL
Sbjct: 2 SFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVMQGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 87 RLFN-ESSPKSKLAPAALVLVPTRELCQQV------YSEVMALIELCKGQVQLKVVQLTS 139
RL + E K + AL+L PTREL QV YS+ + + L V V +
Sbjct: 62 RLIDKEPHAKGRRPVRALILTPTRELAAQVGENVRDYSKYLNIRSL----VVFGGVSINP 117
Query: 140 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE 199
M L G DI++ATPG + Q+ DS++ILVLDEAD +L G+
Sbjct: 118 QM------MKLRGGVDILVATPGRLLDLEH----QNAVSLDSVEILVLDEADRMLDMGFI 167
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
D++ + A +P Q LL SAT S ++ L + +LHNP EV + + + Q
Sbjct: 168 HDIRRVLAKLPARRQNLLFSATFSDEIKGLAEKLLHNPL-----EVEVARRNTASEQITQ 222
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+ ++++ +L+ L E ++ L+FT T A L L K GI+SA ++ Q
Sbjct: 223 H-VHFVDKNRKRELLSQLIGEGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQ 281
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
+R L +F +G L+ATD RG
Sbjct: 282 GARTRALADFKSGGIRVLVATDIA---------------------------------ARG 308
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+D + + V+N+E+P YVHRIGRTGRA TG ++SLV DE K+ +I+ +
Sbjct: 309 LDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLL 364
>gi|25027815|ref|NP_737869.1| cold shock DEAD-box protein A [Corynebacterium efficiens YS-314]
gi|259506205|ref|ZP_05749107.1| ATP-dependent RNA helicase DeaD [Corynebacterium efficiens YS-314]
gi|23493098|dbj|BAC18069.1| putative cold shock DEAD-box protein A [Corynebacterium efficiens
YS-314]
gi|259166182|gb|EEW50736.1| ATP-dependent RNA helicase DeaD [Corynebacterium efficiens YS-314]
Length = 736
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 131/430 (30%), Positives = 210/430 (48%), Gaps = 55/430 (12%)
Query: 5 KEIPSKEVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGK 64
E S++V Q+ E + E F+ LGL +++ A+ K G + P+ IQ +IP++++G
Sbjct: 84 NEDSSEDVTQSSHESSSTEASTGFDALGLPQQVLDAVRKVGFETPSPIQAQTIPVLMDGH 143
Query: 65 DVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIE 124
DVV A+TG+GKT A+ LP+L R+ KS +P ALVL PTREL QV + +
Sbjct: 144 DVVGLAQTGTGKTAAFALPVLSRI-----DKSVRSPQALVLAPTRELALQVADSFQSFAD 198
Query: 125 LCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKI 184
G L V+ + + L IV+ TPG + L G L L+
Sbjct: 199 HLGG---LNVLPIYGGQAYGIQLSGLRRGAHIVVGTPGRIIDHLEKGSLDIS----GLRF 251
Query: 185 LVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPE 244
LVLDEAD +L+ G+++D++ + A P Q L SAT + + +L K L+NP ++
Sbjct: 252 LVLDEADEMLNMGFQEDVERILADTPDDKQVALFSATMPNGIRRLSKQYLNNPQEIS--- 308
Query: 245 VGDVKDEV-IPKNVQQFWISCSERDKLLYILTLLKLELVQKKALI-FTNTIDMAFRLKLF 302
VK E N+ Q ++S + R+K+ + + LE+ + +A+I F T +
Sbjct: 309 ---VKSETRTATNITQRFLSVAHRNKMDALTRI--LEVTEFEAMIMFVRTKHETEEVAEK 363
Query: 303 LEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKS 362
L G +A +N ++ Q R +++ G D L+ATD
Sbjct: 364 LRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATD--------------------- 402
Query: 363 KKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSP 422
RG+D + + V+N+++P + YVHRIGRTGRA TG ++ V+P
Sbjct: 403 ------------VAARGLDVERISHVLNYDIPNDTESYVHRIGRTGRAGRTGEAILFVTP 450
Query: 423 DEMKIFEEIK 432
E ++ I+
Sbjct: 451 RERRMLRSIE 460
>gi|206559326|ref|YP_002230087.1| putative ATP-dependent RNA helicase 1 [Burkholderia cenocepacia
J2315]
gi|421868477|ref|ZP_16300125.1| ATP-dependent RNA helicase RhlE [Burkholderia cenocepacia H111]
gi|198035364|emb|CAR51239.1| putative ATP-dependent RNA helicase 1 [Burkholderia cenocepacia
J2315]
gi|358071499|emb|CCE51003.1| ATP-dependent RNA helicase RhlE [Burkholderia cenocepacia H111]
Length = 477
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 144/411 (35%), Positives = 199/411 (48%), Gaps = 49/411 (11%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SFE LGL LV A+N+ G PT IQQ +IP +L G D++A A+TG+GKT + LP+L
Sbjct: 2 SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 87 RL--FNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
RL F +K A AL+L PTREL QV V A + K L+ + + +
Sbjct: 62 RLHTFYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYLK----LRSTVMFGGVSIN 117
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
AL DIV+ATPG + L ++ SD L ILVLDEAD +L G+ D+K
Sbjct: 118 PQIDALKRGVDIVVATPG---RLLDHMQQKTIDLSD-LDILVLDEADRMLDMGFIHDIKR 173
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264
+ A +P Q LL SAT S ++ L +L +P ++ + + V K I
Sbjct: 174 VLAKLPPQRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAESVAQK------IHP 227
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
+RD+ +LT L E + L+FT T A RL L K GI + ++ Q++R
Sbjct: 228 VDRDRKRELLTHLIREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTR 287
Query: 325 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 384
L EF L+ATD RGID
Sbjct: 288 ALAEFKNSTLQVLVATDI---------------------------------AARGIDIDQ 314
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ V+NF++P YVHRIGRTGRA TG +VSLV DE ++ +I+ +
Sbjct: 315 LPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDIERLI 365
>gi|288936404|ref|YP_003440463.1| DEAD/DEAH box helicase [Klebsiella variicola At-22]
gi|288891113|gb|ADC59431.1| DEAD/DEAH box helicase domain protein [Klebsiella variicola At-22]
Length = 451
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 137/416 (32%), Positives = 210/416 (50%), Gaps = 60/416 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF+ LGL+ ++ A+ ++G +PT IQQ +IP +++G+D++A A+TG+GKT + LPLL
Sbjct: 2 SFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVMQGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 87 RLFN-ESSPKSKLAPAALVLVPTRELCQQV------YSEVMALIELCKGQVQLKVVQLTS 139
RL + E K + AL+L PTREL QV YS+ + + L V V +
Sbjct: 62 RLIDKEPHAKGRRPVRALILTPTRELAAQVGENVRDYSKYLNIRSL----VVFGGVSINP 117
Query: 140 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE 199
M L G DI++ATPG + Q+ DS++ILVLDEAD +L G+
Sbjct: 118 QM------MKLRGGVDILVATPGRLLDLEH----QNAVSLDSVEILVLDEADRMLDMGFI 167
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
D++ + A +P Q LL SAT S ++ L + +LHNP EV + + + Q
Sbjct: 168 HDIRRVLAKLPARRQNLLFSATFSDEIKGLAEKLLHNPL-----EVEVARRNTASEQITQ 222
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+ ++++ +L+ L E ++ L+FT T A L L K GI+SA ++ Q
Sbjct: 223 H-VHFVDKNRKRELLSQLIGEGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQ 281
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
+R L +F +G L+ATD RG
Sbjct: 282 GARTRALADFKSGGIRVLVATDIA---------------------------------ARG 308
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+D + + V+N+E+P YVHRIGRTGRA TG ++SLV DE K+ +I+ +
Sbjct: 309 LDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLL 364
>gi|453062686|gb|EMF03676.1| ATP-dependent RNA helicase RhlE [Serratia marcescens VGH107]
Length = 457
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 136/416 (32%), Positives = 205/416 (49%), Gaps = 60/416 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SFE LGL +V A+ ++G ++PT IQ+ +IP++LEG+D++A A+TG+GKT + LPLL
Sbjct: 2 SFETLGLSAEIVRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 87 RLFNESSPKSKLAPA-ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASD 145
L P P AL+L PTREL Q+ V A + ++L+ + + + +
Sbjct: 62 LLSKHDHPVKGRRPVRALILTPTRELAAQIGENVDAYSK----HLRLRSLVVFGGVSINP 117
Query: 146 LRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD--SLKILVLDEADLLLSYGYEDDLK 203
L G DI++ATPG + L+ ++ D ++ILVLDEAD +L G+ D++
Sbjct: 118 QMMKLRGGVDILVATPGRLLD------LEHQNAVDLSKIEILVLDEADRMLDMGFIHDIR 171
Query: 204 ALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWIS 263
+ A +P Q LL SAT S D+ L +LHNP + EV +N I
Sbjct: 172 RVLAKLPAKRQNLLFSATFSDDIKALANKLLHNPASV----------EVARRNTASEQIE 221
Query: 264 CS----ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
S ++ + +L+ + E K+ L+FT T A L L K GI +A ++ Q
Sbjct: 222 QSVHFVDKKRKRELLSQMIGEGDWKQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQ 281
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
+R L +F G L+ATD RG
Sbjct: 282 GARTRALADFKDGRIRVLVATDIA---------------------------------ARG 308
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+D + V+N+E+P YVHRIGRTGRA TG ++SLV DE K+ +I+ +
Sbjct: 309 LDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDIERLL 364
>gi|433473761|ref|ZP_20431122.1| helicase domain protein [Neisseria meningitidis 97021]
gi|433482323|ref|ZP_20439582.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 2006087]
gi|433484306|ref|ZP_20441531.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 2002038]
gi|433486575|ref|ZP_20443770.1| helicase domain protein [Neisseria meningitidis 97014]
gi|432210059|gb|ELK66025.1| helicase domain protein [Neisseria meningitidis 97021]
gi|432215573|gb|ELK71460.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 2006087]
gi|432220404|gb|ELK76225.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 2002038]
gi|432221860|gb|ELK77664.1| helicase domain protein [Neisseria meningitidis 97014]
Length = 462
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 129/412 (31%), Positives = 202/412 (49%), Gaps = 55/412 (13%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F +L LD ++ A++ +G + PT IQ +IP LEG+D++A A+TGSGKT A+LLP L R
Sbjct: 5 FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
L S K P ALVL PTREL QV +A K + V +
Sbjct: 65 LTKRSEKPGK-GPRALVLTPTRELAAQVEKNALA---YAKNMRWFRTVSIVGGASFGYQT 120
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
AL+ P D+++ATPG + + +G + F+ L++L+LDEAD +L G+ DD++ +
Sbjct: 121 RALSKPVDLIVATPGRLMDLMQSGKV---DFA-RLEVLILDEADRMLDMGFIDDIETIVE 176
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE- 266
P Q LL SAT V KL + + +P I+ + V D +++ + C +
Sbjct: 177 ATPSDRQTLLFSATWDGAVGKLARKLTKDPEIIEVERVDD------QGKIEEQLLYCDDM 230
Query: 267 --RDKLL-YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+++LL +IL ++ + +IFT+T M + L + G + L+ ++PQ R
Sbjct: 231 RHKNRLLDHILRDANID----QCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRN 286
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
L + G L+ATD RGID
Sbjct: 287 RTLMDLRKGRCKILVATDV---------------------------------AARGIDVP 313
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ VIN+++P+ A YVHRIGRTGRA TG +++ +E +I+ ++
Sbjct: 314 TITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYI 365
>gi|281204092|gb|EFA78288.1| putative RNA helicase [Polysphondylium pallidum PN500]
Length = 443
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 132/416 (31%), Positives = 207/416 (49%), Gaps = 53/416 (12%)
Query: 18 EEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKT 77
E E + +FE+LG+D ++V A K G + PT IQ+ +IP L GKD+V A+TGSGKT
Sbjct: 5 ENPEEDTVVTFEKLGVDPQIVEACKKLGFKNPTEIQRKAIPEALAGKDIVGLAQTGSGKT 64
Query: 78 FAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQL 137
A+ +P+L L + S LVL PTREL Q+ ++ AL + +K L
Sbjct: 65 AAFSIPMLQALLAKPS-----GLFGLVLAPTRELAVQISDQIEAL----GAVIGVKCAVL 115
Query: 138 TSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSY 196
+ ALA P I++ TPG + L +K F+ +LK V+DEAD LL
Sbjct: 116 VGGIDTMSQSMALAKKPHIIVGTPGRVVYHLE----NTKGFNLKTLKYFVMDEADRLLGM 171
Query: 197 GYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN 256
+E+++ + VIP+ L SAT +S V KL++ L++P + + D
Sbjct: 172 DFEEEINTILKVIPKDRNTFLFSATMTSKVAKLQRASLNDPVKIQVATKYSTVD-----T 226
Query: 257 VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAE 316
+QQ +I + K Y+ +L EL +IFT+T + +L + L K+ +N +
Sbjct: 227 LQQEYIFIPYKHKECYLTYILN-ELAGNSVIIFTSTCAASTKLAIMLRNLSFKAIPINGQ 285
Query: 317 LPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGV 376
+ Q+ RL L +F A D L+ATD
Sbjct: 286 MDQSKRLSSLNKFKAQTMDILVATDVA--------------------------------- 312
Query: 377 VRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432
RG+D +V VIN+++P ++ Y+HR+GRT RA TG +V+LV+ +++I+ I+
Sbjct: 313 ARGLDIPSVDLVINYDVPVSSKEYMHRVGRTARAGRTGRAVTLVTQYDVEIYLRIE 368
>gi|358060304|dbj|GAA94058.1| hypothetical protein E5Q_00705 [Mixia osmundae IAM 14324]
Length = 447
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 136/441 (30%), Positives = 215/441 (48%), Gaps = 53/441 (12%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F LGL L + G +KP+ IQ SIP L+G+D+VA A+TGSGKT A+ LP+L
Sbjct: 14 FSSLGLIEPLCKVCEQLGYKKPSEIQAQSIPFALQGRDLVALAQTGSGKTAAFALPILQA 73
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
L+NE SP A VL PTREL Q+ + AL + ++ + M
Sbjct: 74 LWNEPSPF-----FACVLAPTRELAYQISEQFQAL----GSTIGVRCAVIVGGMDMMTQS 124
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALS 206
AL+ P I++ATPG + L +K FS ++K LV+DEAD LL + + +
Sbjct: 125 IALSKRPHIIVATPGRLQDHLE----NTKGFSLKAIKYLVMDEADRLLDMDFGPVIDTIL 180
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
+IPR L SAT ++ V KL++ L NP + + K + VQ++
Sbjct: 181 KIIPRERNTFLFSATMTTKVAKLQRASLSNPVKVEV----STKYSTVDTLVQEYCF-FPF 235
Query: 267 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
+ K Y++ L EL K ++F T+ A RL L L G + L+ +L Q++RL L
Sbjct: 236 KHKETYLVYLCN-ELAGKSIIVFVRTVHDAQRLSLILRTLGFPAVPLHGQLTQSNRLGAL 294
Query: 327 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 386
+F +G L+ATD RG+D V
Sbjct: 295 NKFKSGGRQILVATDVAS---------------------------------RGLDIPMVD 321
Query: 387 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNII 446
V+N+++P ++ Y+HR+GRT RA +G S++LV+ ++++ + I+ VG +E ++
Sbjct: 322 YVVNYDIPTHSKDYIHRVGRTARAGRSGKSITLVTQYDVELLQRIEGVVGKKMSEFAHDK 381
Query: 447 APFPLLAQNAVESLRYRAEDV 467
+L++ E+ R A ++
Sbjct: 382 EAVLVLSERVTEAAREAAREI 402
>gi|421544660|ref|ZP_15990736.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM140]
gi|421546775|ref|ZP_15992820.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM183]
gi|421549027|ref|ZP_15995051.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM2781]
gi|421552978|ref|ZP_15998950.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM576]
gi|421557466|ref|ZP_16003371.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 80179]
gi|421561448|ref|ZP_16007295.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM2657]
gi|421567716|ref|ZP_16013450.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM3001]
gi|402323020|gb|EJU58470.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM183]
gi|402323851|gb|EJU59293.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM140]
gi|402325706|gb|EJU61115.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM2781]
gi|402330157|gb|EJU65506.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM576]
gi|402335104|gb|EJU70379.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 80179]
gi|402338379|gb|EJU73614.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM2657]
gi|402343749|gb|EJU78895.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM3001]
Length = 462
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 129/413 (31%), Positives = 202/413 (48%), Gaps = 55/413 (13%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F +L LD ++ A++ +G + PT IQ +IP LEG+D++A A+TGSGKT A+LLP L +
Sbjct: 5 FADLNLDKNILSAVSSEGYESPTPIQAQAIPSALEGRDIMASAQTGSGKTAAFLLPTLQK 64
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
L S K P ALVL PTREL QV +A K + V +
Sbjct: 65 LTKRSEKPGK-GPRALVLTPTRELAAQVEKNALA---YAKNMRWFRTVSIVGGASFGYQT 120
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
AL+ P D+++ATPG + + +G K + L++L+LDEAD +L G+ DD++ +
Sbjct: 121 RALSKPVDLIVATPGRLMDLMQSG----KVDFERLEVLILDEADRMLDMGFIDDIETIVE 176
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE- 266
P Q LL SAT V KL + + +P I+ + V D +++ + C +
Sbjct: 177 ATPSDRQTLLFSATWDGAVGKLARKLTKDPEIIEVERVDD------QGKIEEQLLYCDDM 230
Query: 267 --RDKLL-YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+++LL +IL ++ + +IFT+T M + L + G + L+ ++PQ R
Sbjct: 231 RHKNRLLDHILRDADID----QCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRN 286
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
L + G L+ATD RGID
Sbjct: 287 RTLMDLRKGRCKILVATDV---------------------------------AARGIDVP 313
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
+ VIN+++P+ A YVHRIGRTGRA TG +++ +E +I+ ++G
Sbjct: 314 TITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYIG 366
>gi|322703417|gb|EFY95026.1| ATP-dependent rRNA helicase RRP3 [Metarhizium anisopliae ARSEF 23]
Length = 478
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 134/427 (31%), Positives = 212/427 (49%), Gaps = 56/427 (13%)
Query: 15 AEEEEAEAEEE----KSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARA 70
A +EA EE K+F+ELG+ L A + PT IQ+ SIP+ L+ +D++ A
Sbjct: 42 ATLDEAVVEESDTQPKTFKELGIVDSLCEACESLNYKFPTPIQEKSIPIALQDRDIIGLA 101
Query: 71 KTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQV 130
+TGSGKT A+ LP+L L ++ P LVL PTREL Q+ AL +
Sbjct: 102 ETGSGKTAAFALPILQALLDKPQPL-----FGLVLAPTRELAHQIGQAFEAL----GSSI 152
Query: 131 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDE 189
L+ + + AL P I++ATPG + L ++K FS +LK LV+DE
Sbjct: 153 SLRCAVIVGGLDMVPQAVALGKKPHIIVATPGRLVDHLE----KTKGFSLRTLKYLVMDE 208
Query: 190 ADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVK 249
AD LL + + L IPR + L SAT SS V+ L++ L +P ++ V K
Sbjct: 209 ADRLLDMDFGPAIDKLLKFIPRERRTYLFSATLSSKVESLQRASLRDPVRVS---VSSNK 265
Query: 250 DEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIK 309
+ + +Q + +R K Y++ L+ E K ++FT T+ R+ + L G
Sbjct: 266 YQTVSTLLQNLLVVPQKR-KDTYLIYLVN-EFTGKSTIVFTRTVWETQRIAILLRTLGFG 323
Query: 310 SAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAK 369
+ L+ +L Q++RL L +F +G D L+ATD
Sbjct: 324 AIPLHGQLSQSARLGALNKFRSGTRDILVATDVA-------------------------- 357
Query: 370 LDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFE 429
RG+D V V+N+++PQ++ Y+HR+GRT RA +G ++SLV+ +++IF+
Sbjct: 358 -------ARGLDISKVDVVLNYDLPQDSKTYIHRVGRTARAGKSGIAISLVTQYDIEIFQ 410
Query: 430 EIKSFVG 436
I++ +G
Sbjct: 411 RIEAALG 417
>gi|170734034|ref|YP_001765981.1| DEAD/DEAH box helicase [Burkholderia cenocepacia MC0-3]
gi|169817276|gb|ACA91859.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
MC0-3]
Length = 486
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 144/411 (35%), Positives = 199/411 (48%), Gaps = 49/411 (11%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SFE LGL LV A+N+ G PT IQQ +IP +L G D++A A+TG+GKT + LP+L
Sbjct: 2 SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 87 RL--FNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
RL F +K A AL+L PTREL QV V A + K L+ + + +
Sbjct: 62 RLHTFYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYLK----LRSTVMFGGVSIN 117
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
AL DIV+ATPG + L ++ SD L ILVLDEAD +L G+ D+K
Sbjct: 118 PQIDALKRGVDIVVATPG---RLLDHMQQKTIDLSD-LDILVLDEADRMLDMGFIHDIKR 173
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264
+ A +P Q LL SAT S ++ L +L +P ++ + + V K I
Sbjct: 174 VLAKLPPQRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAESVAQK------IHP 227
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
+RD+ +LT L E + L+FT T A RL L K GI + ++ Q++R
Sbjct: 228 VDRDRKRELLTHLIREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTR 287
Query: 325 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 384
L EF L+ATD RGID
Sbjct: 288 ALAEFKNSTLQVLVATDI---------------------------------AARGIDIDQ 314
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ V+NF++P YVHRIGRTGRA TG +VSLV DE ++ +I+ +
Sbjct: 315 LPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDIERLI 365
>gi|294657345|ref|XP_459659.2| DEHA2E08052p [Debaryomyces hansenii CBS767]
gi|91207781|sp|Q6BQ61.2|RRP3_DEBHA RecName: Full=ATP-dependent rRNA helicase RRP3
gi|199432622|emb|CAG87892.2| DEHA2E08052p [Debaryomyces hansenii CBS767]
Length = 477
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 141/440 (32%), Positives = 214/440 (48%), Gaps = 58/440 (13%)
Query: 3 KSKEIPSKEVKQAEEEEAEAEEE-----KSFEELGLDLRLVHALNKKGIQKPTLIQQASI 57
+++E P+KE AE + + KSF EL L L+ A+ + KPT IQ +I
Sbjct: 37 QAQEEPAKEENVAENFDTVVDPTAELKFKSFNELKLIPELLEAIQQMKFTKPTPIQSEAI 96
Query: 58 PLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYS 117
P LEGKD++ A+TGSGKT A+ +P+L L+ +++ A LVL PTREL Q+
Sbjct: 97 PHALEGKDIIGLAQTGSGKTAAFAIPILQALW-----EAQAAYYGLVLAPTRELAYQIKE 151
Query: 118 EVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKS 177
AL + L+ V + M D L P I++ATPG + L +K
Sbjct: 152 TFDAL----GSSMGLRSVCIVGGMDMMDQARDLMRKPHILVATPGRIMDHLE----HTKG 203
Query: 178 FS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHN 236
FS +LK LV+DEAD LL + L + +IP L SAT ++ + KL++ LHN
Sbjct: 204 FSLKNLKYLVMDEADRLLDMDFGPALDKILKIIPTQRTTYLFSATMTNKIAKLQRASLHN 263
Query: 237 PYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMA 296
P + + D N+ Q + S+ K Y++ LL E + K +IFT T +
Sbjct: 264 PVRVAVSNKYQTAD-----NLVQSMMLVSDGYKNTYLIHLLN-EFLGKSIIIFTRTCAHS 317
Query: 297 FRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGH 356
R L G + L+ +L Q RL L +F AG + LIATD
Sbjct: 318 QRTALLARILGFSAVPLHGQLTQAQRLGSLNKFKAGKANILIATD--------------- 362
Query: 357 VDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGAS 416
RG+D +V VIN+++P ++ Y+HR+GRT RA +G S
Sbjct: 363 ------------------VAARGLDIPSVDIVINYDIPTDSKAYIHRVGRTARAGKSGKS 404
Query: 417 VSLVSPDEMKIFEEIKSFVG 436
+SL++ +++++ I+S +G
Sbjct: 405 ISLITQYDLEMYLRIESVLG 424
>gi|319638186|ref|ZP_07992949.1| ATP-dependent RNA helicase [Neisseria mucosa C102]
gi|317400459|gb|EFV81117.1| ATP-dependent RNA helicase [Neisseria mucosa C102]
Length = 469
Score = 188 bits (477), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 129/413 (31%), Positives = 202/413 (48%), Gaps = 55/413 (13%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F +L LD ++ A+ +G + PT IQ +IP L+G+D++A A+TGSGKT A+LLP L R
Sbjct: 5 FADLNLDKNILSAVRSEGYESPTPIQAQAIPFALDGRDIMASAQTGSGKTAAFLLPTLQR 64
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
L S K P ALVL PTREL QV +A K + V +
Sbjct: 65 LTKRSEKPGK-GPRALVLTPTRELAAQVEKNALA---YAKNMRWFRTVSIVGGASFGYQT 120
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
AL+ P D+++ATPG + + +G + F+ L++L+LDEAD +L G+ DD++ +
Sbjct: 121 RALSKPVDLIVATPGRLMDLMQSGKV---DFA-RLEVLILDEADRMLDMGFIDDIETIVE 176
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE- 266
P Q LL SAT V KL + + +P I+ + V D +++ + C +
Sbjct: 177 ATPTDRQTLLFSATWDGAVGKLARKLTKDPEIIEVERVDD------QGKIEEQLLYCDDM 230
Query: 267 --RDKLL-YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+++LL +IL ++ + +IFT+T M + L + G + L+ ++PQ R
Sbjct: 231 RHKNRLLDHILRDANID----QCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRN 286
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
L + G L+ATD RGID
Sbjct: 287 RTLMDLRKGRCKILVATDV---------------------------------AARGIDVP 313
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
+ VIN+++P+ A YVHRIGRTGRA TG +++ +E +I+ ++G
Sbjct: 314 TITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYIG 366
>gi|237745550|ref|ZP_04576030.1| ATP-dependent RNA helicase [Oxalobacter formigenes HOxBLS]
gi|229376901|gb|EEO26992.1| ATP-dependent RNA helicase [Oxalobacter formigenes HOxBLS]
Length = 470
Score = 188 bits (477), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 143/415 (34%), Positives = 201/415 (48%), Gaps = 58/415 (13%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F + GL ++ AL+ G PT IQ +IP+ILEGKDV+ A+TG+GKT Y LP+L
Sbjct: 17 FGDFGLASEILKALDDLGYSSPTPIQSQAIPVILEGKDVMGAAQTGTGKTAGYSLPVLQS 76
Query: 88 LF---NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
L N S ++ AL+LVPTREL QVY +V + L+ + + S
Sbjct: 77 LLYYANASMSPARHPVRALILVPTRELADQVYEDVRKYAKYT----SLRTAVVFGGVDMS 132
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLK 203
L +I+IATPG + +Q K+ + ILVLDEAD +L G+ DL+
Sbjct: 133 GQTGILRAGAEILIATPGRLLDH-----IQQKNVNLGQTGILVLDEADRMLDMGFLPDLQ 187
Query: 204 ALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWIS 263
+ ++P+ Q LL SAT SS++ KL L P + + D NV Q
Sbjct: 188 RIVNLLPKKRQNLLFSATFSSEIRKLANSFLDRPVSVEVARQNATAD-----NVTQTVYR 242
Query: 264 CSERDK---LLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 320
E DK + Y+L L K E V LIF+NT A RL LEK G+K+A ++ + Q
Sbjct: 243 IDEADKNDAVEYLLRLHKREQV----LIFSNTKAGASRLARQLEKKGLKAAAIHGDKTQA 298
Query: 321 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 380
R+ L+ F G L+ATD RG+
Sbjct: 299 ERMAALDAFKEGNITVLVATDVA---------------------------------ARGL 325
Query: 381 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ + VINF++P A YVHRIGRTGRA +G ++SL S + K+ EI+ +
Sbjct: 326 HIEELPCVINFDLPFVAEDYVHRIGRTGRAGASGEAISLCSAKDEKLLNEIEKLI 380
>gi|153834507|ref|ZP_01987174.1| RhlE [Vibrio harveyi HY01]
gi|148869093|gb|EDL68132.1| RhlE [Vibrio harveyi HY01]
Length = 411
Score = 188 bits (477), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 135/410 (32%), Positives = 207/410 (50%), Gaps = 50/410 (12%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F +LGL + A+ G +KPT IQQ +IP++L G++++A A+TG+GKT +++LP+L +
Sbjct: 3 FSKLGLSAPITDAVKALGYEKPTSIQQKAIPIVLRGRNLIAAAQTGTGKTASFVLPILEK 62
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
L + + K A A++L PTREL QV+ IE + L+ + + + + +
Sbjct: 63 LSQGETQRKKRA-RAIILTPTRELALQVHQS----IEAYGKNLPLRSMAMFGGVDYAPQK 117
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
AL DIV++TPG + Q D +++LVLDEAD +L G+ D + +
Sbjct: 118 QALIDGVDIVVSTPGRLIDLYG----QRAIHFDEVEMLVLDEADKMLDMGFIDSIDKIVD 173
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 267
+P Q LL SAT S+ V L K + +P E+ K N++Q WI+ ++
Sbjct: 174 CMPEDIQSLLFSATLSNPVRDLAKNAIVDP-----EEISIAKHSASKSNIKQ-WITTVDK 227
Query: 268 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 327
D +L+ + E + L+F T A +L LEK GI + ++ Q R ++E
Sbjct: 228 DMKSSLLSHMLNENDWSQVLVFIETKHGAAKLVTQLEKRGIVAEAFHSGRNQRVRQELIE 287
Query: 328 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGV-VRGIDFKNVH 386
+F AG YL+AT GV RGID N+
Sbjct: 288 QFKAGEIQYLVAT----------------------------------GVAARGIDIDNLP 313
Query: 387 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
VIN+++P A YVHRIGRTGRA G ++SLVS D+ K I+S +G
Sbjct: 314 VVINYDLPYPADEYVHRIGRTGRAGAQGEAISLVSKDDFKNLCMIESRLG 363
>gi|171317466|ref|ZP_02906657.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MEX-5]
gi|171097362|gb|EDT42206.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MEX-5]
Length = 480
Score = 188 bits (477), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 142/412 (34%), Positives = 200/412 (48%), Gaps = 51/412 (12%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SFE LGL LV A+N+ G PT IQQ +IP +L G D++A A+TG+GKT + LP+L
Sbjct: 2 SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 87 RL--FNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
RL + +K A AL+L PTREL QV V A + K L+ + + +
Sbjct: 62 RLHTYYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYVK----LRSTVMFGGVSIN 117
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLK 203
AL DIV+ATPG + +Q K+ +L ILVLDEAD +L G+ D+K
Sbjct: 118 PQIDALKRGVDIVVATPGRLLDH-----MQQKTIDLSNLDILVLDEADRMLDMGFIHDIK 172
Query: 204 ALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWIS 263
+ A +P Q LL SAT S ++ L +L +P ++ + + V K I
Sbjct: 173 RVLAKLPPQRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAESVAQK------IH 226
Query: 264 CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+RD+ +LT L E + L+FT T A RL L K GI + ++ Q++R
Sbjct: 227 PVDRDRKRELLTHLIREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSART 286
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
L EF + L+ATD RGID
Sbjct: 287 RALAEFKSSTLQVLVATDI---------------------------------AARGIDID 313
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ V+NF++P YVHRIGRTGRA TG +VSLV DE ++ +I+ +
Sbjct: 314 QLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDIERLI 365
>gi|134296873|ref|YP_001120608.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
vietnamiensis G4]
gi|387903185|ref|YP_006333524.1| ATP-dependent RNA helicase RhlE [Burkholderia sp. KJ006]
gi|134140030|gb|ABO55773.1| DEAD/DEAH box helicase domain protein [Burkholderia vietnamiensis
G4]
gi|387578077|gb|AFJ86793.1| ATP-dependent RNA helicase RhlE [Burkholderia sp. KJ006]
Length = 486
Score = 188 bits (477), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 144/411 (35%), Positives = 199/411 (48%), Gaps = 49/411 (11%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SFE LGL LV A+N+ G PT IQQ +IP +L G D++A A+TG+GKT + LP+L
Sbjct: 2 SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 87 RL--FNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
RL F +K A AL+L PTREL QV V A + K L+ + + +
Sbjct: 62 RLHTFYTEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYVK----LRSTVMFGGVSIN 117
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
AL DIV+ATPG + L ++ SD L ILVLDEAD +L G+ D+K
Sbjct: 118 PQIDALKRGVDIVVATPG---RLLDHMQQKTIDLSD-LDILVLDEADRMLDMGFIHDIKR 173
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264
+ A +P Q LL SAT S ++ L +L +P ++ + + V K I
Sbjct: 174 VLAKLPPRRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAETVAQK------IHP 227
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
+RD+ +LT L E + L+FT T A RL L K GI + ++ Q++R
Sbjct: 228 VDRDRKRELLTHLIREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTR 287
Query: 325 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 384
L EF L+ATD RGID
Sbjct: 288 ALAEFKNNTLQVLVATDI---------------------------------AARGIDIDQ 314
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ V+NF++P YVHRIGRTGRA TG +VSLV DE ++ +I+ +
Sbjct: 315 LPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDIERLI 365
>gi|378768793|ref|YP_005197267.1| ATP-dependent RNA helicase DeaD [Pantoea ananatis LMG 5342]
gi|386018183|ref|YP_005936486.1| cold-shock DEAD box protein A DeaD [Pantoea ananatis AJ13355]
gi|386080899|ref|YP_005994424.1| cold-shock DEAD box protein A [Pantoea ananatis PA13]
gi|327396268|dbj|BAK13690.1| cold-shock DEAD box protein A DeaD [Pantoea ananatis AJ13355]
gi|354990080|gb|AER34204.1| cold-shock DEAD box protein A [Pantoea ananatis PA13]
gi|365188280|emb|CCF11230.1| ATP-dependent RNA helicase DeaD [Pantoea ananatis LMG 5342]
Length = 630
Score = 188 bits (477), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 135/409 (33%), Positives = 191/409 (46%), Gaps = 54/409 (13%)
Query: 25 EKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPL 84
+ +F ELGL+ L+ +LN G KP+ IQ IP +L G+DV+ A+TGSGKT A+ LPL
Sbjct: 5 QTTFAELGLNAELLESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPL 64
Query: 85 LHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
LH + P K AP LVL PTREL QV A+ E K L VV L
Sbjct: 65 LHNI----DPTVK-APQILVLAPTRELAVQVAE---AVTEFSKHMRGLNVVALYGGQRYD 116
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
AL P +V+ TPG + L G L +L+ LVLDEAD +L G+ +D++
Sbjct: 117 VQLRALRQGPQVVVGTPGRLLDHLKRGTLDLS----NLRGLVLDEADEMLRMGFIEDVET 172
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264
+ A IP G Q L SAT + ++ K + +P + + + P Q +W +
Sbjct: 173 IMAQIPEGHQTALFSATMPEAIRRITKRFMKDPQEVRIQSSMTTR----PDISQSYWTAY 228
Query: 265 SER-DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+ D L+ L + A+IF T + + LE+ G SA LN ++ Q R
Sbjct: 229 GRKTDALVRFLEAEDFD----AAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALRE 284
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
LE G D LIATD RG+D +
Sbjct: 285 QTLERLKDGRLDILIATDV---------------------------------AARGLDVE 311
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432
+ V+N+++P +A YVHRIGRTGRA G ++ V E ++ I+
Sbjct: 312 RISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 360
>gi|209447030|ref|NP_001129273.1| probable ATP-dependent RNA helicase DDX27 [Rattus norvegicus]
gi|169642292|gb|AAI60885.1| Ddx27 protein [Rattus norvegicus]
Length = 761
Score = 188 bits (477), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 141/417 (33%), Positives = 200/417 (47%), Gaps = 49/417 (11%)
Query: 17 EEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGK 76
E+ +E ++ +F+++ L L+ A+ G ++PT IQ+A IP+ L GKD+ A A TG+GK
Sbjct: 175 EDASEYDKSLTFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGK 234
Query: 77 TFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQ 136
T A+ LP+L RL + P+ LVLVPTREL QV+S L + C L V
Sbjct: 235 TAAFALPVLERLIYK--PRQAAVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGG 292
Query: 137 LTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLS 195
L + LRAA PDI+IATPG + L SF S+++L+LDEAD +L
Sbjct: 293 LDVKSQEAALRAA----PDILIATPGRLIDHLHN----CPSFHLSSIEVLILDEADRMLD 344
Query: 196 YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK 255
+E+ +K + + Q +L SAT + +V L + L NP + + D V P
Sbjct: 345 EYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTD----VAPF 400
Query: 256 NVQQFW-ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILN 314
Q+F I + I+ L + ++FT T A R+ + L G++ L+
Sbjct: 401 LRQEFIRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLLGLQVGELH 460
Query: 315 AELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEF 374
L Q RL L F D L+ATD
Sbjct: 461 GNLSQTQRLEALRRFKDEQIDILVATD--------------------------------- 487
Query: 375 GVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 431
RG+D + V TVINF MP YVHR+GRT RA G SVSLV +E K+ +EI
Sbjct: 488 VAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEI 544
>gi|393762574|ref|ZP_10351201.1| DEAD/DEAH box helicase [Alishewanella agri BL06]
gi|392606809|gb|EIW89693.1| DEAD/DEAH box helicase [Alishewanella agri BL06]
Length = 444
Score = 188 bits (477), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 138/410 (33%), Positives = 215/410 (52%), Gaps = 49/410 (11%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F+++GLD RL+ ++ G +PT IQQ +IP ++ G+D++ +KTGSGKT AYLLP++ R
Sbjct: 3 FQDMGLDPRLLRSVQHLGFARPTEIQQEAIPAVMVGRDLLVSSKTGSGKTLAYLLPMMQR 62
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
L +S SK AL+L PTREL +QVY++ + L + V L +D
Sbjct: 63 LL-KSRALSKQDARALILTPTRELAKQVYAQ----LRLFVANTPVTAVLLVGGENFNDQE 117
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS- 206
L PDI++ATPG L F L++L+LDEAD +L G+ L ++
Sbjct: 118 KLLKRQPDIIVATPGRFVDHLE----HKSVFLQGLEMLILDEADRMLDLGFLPQLTIINK 173
Query: 207 AVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265
A R Q LL SAT +D+D L +L NP+ +++ ++ ++ Q+F+ +
Sbjct: 174 AADHRLRQTLLFSATLEHTDLDALSLALLKNPFRVSVNSGHELHSDI----SQRFYFADH 229
Query: 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
K + LL+ E + K+ +IFT T D A RL F ++ G+ + L+A L Q R +
Sbjct: 230 LTHKEALLAKLLQQESL-KQLIIFTATRDDAGRLAEFCQQAGLPAIGLSARLNQAQRNKV 288
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
+++F +G + L+ TD L S RG+D V
Sbjct: 289 MQDFASGKYQVLVTTD----------------------------LAS-----RGLDLLQV 315
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
VINF++P++ YVHRIGRTGRA G ++SLV P + ++I++F+
Sbjct: 316 SHVINFDLPKHPEEYVHRIGRTGRAGAKGTAISLVGPKDWPALQKIEAFL 365
>gi|307730917|ref|YP_003908141.1| DEAD/DEAH box helicase [Burkholderia sp. CCGE1003]
gi|307585452|gb|ADN58850.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1003]
Length = 517
Score = 188 bits (477), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 143/413 (34%), Positives = 204/413 (49%), Gaps = 52/413 (12%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF+ LGL LV A+++ G PT IQ +IP +L G D++A A+TG+GKT + LP+L
Sbjct: 2 SFDSLGLSEPLVRAVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 87 RLFNE---SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPA 143
RL + ++ K A AL+L PTREL QV V A + K LK + +
Sbjct: 62 RLHSMPPVAAASGKRAVRALILTPTRELAAQVEESVRAYGKYLK----LKSTVMFGGVGI 117
Query: 144 SDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS-LKILVLDEADLLLSYGYEDDL 202
+ AL DIV+ATPG + L +Q K+ S L+ILVLDEAD +L G+ D+
Sbjct: 118 NPQIGALKSGVDIVVATPG---RLLDH--MQQKTIDLSHLEILVLDEADRMLDMGFIHDI 172
Query: 203 KALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWI 262
K + A +P Q LL SAT S ++ L +L +P ++ + + V K I
Sbjct: 173 KRVLAKLPPKRQNLLFSATFSDEIKALADNLLDSPALIEVARRNTTAETVAQK------I 226
Query: 263 SCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 322
+RDK +LT L + + L+FT T A RL L K GI + ++ Q++R
Sbjct: 227 HPVDRDKKRELLTHLIKQHNWFQVLVFTRTKHGANRLAEQLSKDGISALAIHGNKSQSAR 286
Query: 323 LHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDF 382
L EF G L+ATD RGID
Sbjct: 287 TRALAEFKDGTLQVLVATDI---------------------------------AARGIDI 313
Query: 383 KNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ V+NF++P YVHRIGRTGRA TG +VSLV DE+++ ++I+ +
Sbjct: 314 DQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLLKDIEKLI 366
>gi|451811659|ref|YP_007448114.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
crithidii TCC036E]
gi|451776817|gb|AGF47816.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
crithidii TCC036E]
Length = 456
Score = 188 bits (477), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 126/400 (31%), Positives = 199/400 (49%), Gaps = 50/400 (12%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F+ GLD L++++N G PT IQ+ +IP IL G+DV+ A+TG+GKT A++LP++++
Sbjct: 14 FDSFGLDQLLLNSINSIGYDTPTAIQEKAIPFILNGRDVLGAAQTGTGKTAAFVLPIINK 73
Query: 88 LF---NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
+ N S+ ++ L+LVPTREL QVY V+ + L+ V L
Sbjct: 74 ILPYANSSTSPARHLLRVLILVPTRELANQVYDSVV----IYSKNTNLRSVVLFGGADHY 129
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
+ L +I++ATPG + + G L + +++I VLDEAD +L G+ D+
Sbjct: 130 NQENNLKLGCEILVATPGRLIAHIEQGNLHLQ----NIEIFVLDEADRMLDMGFMPDIDK 185
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264
+ + +P+ Q L SAT S + K+ L +P L + + D NV+Q
Sbjct: 186 IISKLPKNRQTLFFSATFSKFMRKIGMSYLKDPVELDITSPNSIAD-----NVEQLSYIV 240
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
R K+ ++++L +++ +IFTNT +L FL I+ ++ + Q R
Sbjct: 241 PNRFKMEAVVSILTARVLE-TIIIFTNTKLSTIKLTSFLRSSNIQCDSIHGDKSQLERTA 299
Query: 325 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 384
+LE F G+ L+ATD RG+D
Sbjct: 300 VLESFKNGILRVLVATD---------------------------------VAARGLDVLG 326
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE 424
+ VINF++P + YVHRIGRTGRA NTG ++SL+S DE
Sbjct: 327 ISCVINFDIPHSPEDYVHRIGRTGRANNTGVAISLISNDE 366
>gi|90409933|ref|ZP_01217950.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
gi|90329286|gb|EAS45543.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
Length = 462
Score = 188 bits (477), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 141/443 (31%), Positives = 220/443 (49%), Gaps = 66/443 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
+F ELGL L+ L + Q+PT IQ IP +L G+D++A A TGSGKT A+ LP+L
Sbjct: 42 NFTELGLISPLLARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPILQ 101
Query: 87 RLFNESSPKSKLAP-----AALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSM 141
LF + L+ L+LVPTREL +QV + + G + K V + +
Sbjct: 102 HLFQQQHANKPLSSKGNYVTGLILVPTRELAKQVADSIKSYAVHFNGAI--KTVAVFGGV 159
Query: 142 PASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDD 201
A+ AL G DI++ATPG + +S+ ++ D +K LVLDEAD +LS G+ D+
Sbjct: 160 SANTQMLALRGGTDILVATPGRLLDLISSNAIK----LDRVKTLVLDEADRMLSLGFTDE 215
Query: 202 LKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW 261
L AL ++P+ Q LL SAT V L + +L++P + L + D V Q
Sbjct: 216 LSALLDLLPKNKQTLLFSATFPEQVQALTQELLNDPVEIQL-QSADASTLV------QRV 268
Query: 262 ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 321
+ ++ +K + L+K + ++ALIF N + L L K GI + + + + Q +
Sbjct: 269 FTVNKGEKTALLAHLIK-QHEWRQALIFVNAKNSCEHLADKLSKRGITAEVFHGDKGQGA 327
Query: 322 RLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGID 381
R +LE F +G + LIATD RG+D
Sbjct: 328 RTRVLEAFKSGEIEVLIATDI---------------------------------AARGLD 354
Query: 382 FKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF------------- 428
+ + VINF++P++ + Y+HRIGR+GRA G ++SL+ D+ F
Sbjct: 355 IEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHDDYHHFKVIEKKNKIRLER 414
Query: 429 EEIKSFVGDDENEDSNIIAPFPL 451
E+++ F D+ NE + +IA P+
Sbjct: 415 EQVEGFEADEVNE-AFLIANKPM 436
>gi|161523807|ref|YP_001578819.1| DEAD/DEAH box helicase [Burkholderia multivorans ATCC 17616]
gi|189351431|ref|YP_001947059.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
gi|160341236|gb|ABX14322.1| DEAD/DEAH box helicase domain protein [Burkholderia multivorans
ATCC 17616]
gi|189335453|dbj|BAG44523.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
Length = 480
Score = 188 bits (477), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 144/411 (35%), Positives = 199/411 (48%), Gaps = 49/411 (11%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SFE LGL LV A+N+ G PT IQQ +IP +L G D++A A+TG+GKT + LP+L
Sbjct: 2 SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 87 RL--FNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
RL F +K A AL+L PTREL QV V A + K L+ + + +
Sbjct: 62 RLHTFYTEHRSAKRAVRALILTPTRELAAQVEESVRAYSKYLK----LRSTVMFGGVSIN 117
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
AL DIV+ATPG + L ++ SD L ILVLDEAD +L G+ D+K
Sbjct: 118 PQIDALKRGVDIVVATPG---RLLDHMQQKTIDLSD-LDILVLDEADRMLDMGFIHDIKR 173
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264
+ A +P Q LL SAT S ++ L +L +P ++ + + V K I
Sbjct: 174 VLAKLPPRRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAETVAQK------IHP 227
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
+RD+ +LT L E + L+FT T A RL L K GI + ++ Q++R
Sbjct: 228 VDRDRKRELLTHLIREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTR 287
Query: 325 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 384
L EF L+ATD RGID
Sbjct: 288 ALAEFKNNTLQVLVATDI---------------------------------AARGIDIDQ 314
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ V+NF++P YVHRIGRTGRA TG +VSLV DE ++ +I+ +
Sbjct: 315 LPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDIERLI 365
>gi|325087574|gb|EGC40884.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces capsulatus H88]
Length = 485
Score = 187 bits (476), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 138/432 (31%), Positives = 217/432 (50%), Gaps = 55/432 (12%)
Query: 11 EVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARA 70
E Q + EEA KSF++LG+ L A G + PT IQ SIPL L+G+D++ A
Sbjct: 47 ESPQVQREEAVT---KSFKDLGIIDSLCEACEALGYKSPTPIQAESIPLALQGRDLIGLA 103
Query: 71 KTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQV 130
+TGSGKT A+ LP+L L N+ P+S L+L PTREL Q+ AL L +
Sbjct: 104 ETGSGKTAAFALPILQALMNK--PQSLF---GLILAPTRELACQISEAFEALGSL----I 154
Query: 131 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDE 189
++ + M +L P I++ATPG + L +K FS +LK LV+DE
Sbjct: 155 SVRCAVIVGGMDMVSQAISLGKKPHIIVATPGRLLDHLEN----TKGFSLRNLKYLVMDE 210
Query: 190 ADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVK 249
AD LL + L + V+PR + L SAT SS V+ L++ L NP ++ + K
Sbjct: 211 ADRLLDLDFGPILDKILKVLPRERRTYLFSATMSSKVESLQRASLSNPLRVS---ISSNK 267
Query: 250 DEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIK 309
+ + +Q + + K +Y++ LL E + A++FT T++ RL + L G
Sbjct: 268 YQTVATLLQSYLF-IPHKYKDVYLVYLLN-EYAGQSAIVFTRTVNETQRLAILLRTLGFG 325
Query: 310 SAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAK 369
S L+ +L Q+SRL L +F + D L+ATD
Sbjct: 326 SIPLHGQLSQSSRLGALSKFRSRSRDILVATDVA-------------------------- 359
Query: 370 LDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFE 429
RG+D +V V+NF++P ++ Y+HR+GRT RA +G + S+V+ +++++
Sbjct: 360 -------ARGLDIPSVDVVLNFDLPSDSKTYIHRVGRTARAGKSGHAFSIVTQYDIEVWL 412
Query: 430 EIKSFVGDDENE 441
I++ +G +E
Sbjct: 413 RIENALGKKLDE 424
>gi|107023606|ref|YP_621933.1| DEAD/DEAH box helicase [Burkholderia cenocepacia AU 1054]
gi|116690690|ref|YP_836313.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
cenocepacia HI2424]
gi|105893795|gb|ABF76960.1| DEAD/DEAH box helicase-like protein [Burkholderia cenocepacia AU
1054]
gi|116648779|gb|ABK09420.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
HI2424]
Length = 486
Score = 187 bits (476), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 144/411 (35%), Positives = 199/411 (48%), Gaps = 49/411 (11%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SFE LGL LV A+N+ G PT IQQ +IP +L G D++A A+TG+GKT + LP+L
Sbjct: 2 SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 87 RL--FNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
RL F +K A AL+L PTREL QV V A + K L+ + + +
Sbjct: 62 RLHTFYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYLK----LRSTVMFGGVSIN 117
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
AL DIV+ATPG + L ++ SD L ILVLDEAD +L G+ D+K
Sbjct: 118 PQIDALKRGVDIVVATPG---RLLDHMQQKTIDLSD-LDILVLDEADRMLDMGFIHDIKR 173
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264
+ A +P Q LL SAT S ++ L +L +P ++ + + V K I
Sbjct: 174 VLAKLPPQRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAESVAQK------IHP 227
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
+RD+ +LT L E + L+FT T A RL L K GI + ++ Q++R
Sbjct: 228 VDRDRKRELLTHLIREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTR 287
Query: 325 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 384
L EF L+ATD RGID
Sbjct: 288 ALAEFKNSTLQVLVATDI---------------------------------AARGIDIDQ 314
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ V+NF++P YVHRIGRTGRA TG +VSLV DE ++ +I+ +
Sbjct: 315 LPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDIERLI 365
>gi|408395320|gb|EKJ74502.1| hypothetical protein FPSE_05252 [Fusarium pseudograminearum CS3096]
Length = 487
Score = 187 bits (476), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 129/423 (30%), Positives = 216/423 (51%), Gaps = 56/423 (13%)
Query: 17 EEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGK 76
EE A +K+F++LG++ L A K + PT IQ+ SIP+ L+G+D++ A+TGSGK
Sbjct: 51 EETAVDAPKKTFKDLGVNDALCEACEKLNYKYPTPIQEQSIPVALQGRDIIGLAETGSGK 110
Query: 77 TFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQ 136
T A+ LP+L L ++ P LVL PTREL Q+ AL L + L+
Sbjct: 111 TAAFALPVLQALLDKPQPL-----FGLVLAPTRELATQIGQAFEALGSL----ISLRCAV 161
Query: 137 LTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLS 195
+ + AL P I++ATPG + L ++K FS +LK L++DEAD LL
Sbjct: 162 IVGGLDMVPQSIALGKKPHIIVATPGRLVDHLE----KTKGFSLRTLKYLIMDEADRLLD 217
Query: 196 YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK 255
+ + + +PR + L SAT SS ++ L++ L +P ++ + K + +
Sbjct: 218 MDFGPSIDKILKFVPRERRTYLFSATISSKIESLQRASLRDPVKVS---ISSNKYQTVST 274
Query: 256 NVQQF-WISCSERD-KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAIL 313
+Q + +I ++D L+Y++ E + ++FT T+ R+ + L G + L
Sbjct: 275 LLQHYLFIPHPQKDVHLIYLIN----EHAGQSTIVFTRTVWETQRVSILLRTLGFGAIPL 330
Query: 314 NAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSE 373
+ +L Q+SRL L +F +G D L+ATD
Sbjct: 331 HGQLSQSSRLGALNKFRSGTRDILVATDVA------------------------------ 360
Query: 374 FGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKS 433
RG+D +V V+N+++PQ++ YVHR+GRT RA +G ++SLV+ +++I+ I++
Sbjct: 361 ---ARGLDIPSVDVVLNYDLPQDSKTYVHRVGRTARAGKSGVAISLVTQYDLEIYLRIEA 417
Query: 434 FVG 436
+G
Sbjct: 418 ALG 420
>gi|407714673|ref|YP_006835238.1| ATP-dependent RNA helicase RhlE [Burkholderia phenoliruptrix
BR3459a]
gi|407236857|gb|AFT87056.1| ATP-dependent RNA helicase RhlE [Burkholderia phenoliruptrix
BR3459a]
Length = 530
Score = 187 bits (476), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 143/413 (34%), Positives = 204/413 (49%), Gaps = 52/413 (12%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF+ LGL LV A+++ G PT IQ +IP +L G D++A A+TG+GKT + LP+L
Sbjct: 2 SFDSLGLSEPLVRAVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 87 RLFNE---SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPA 143
RL + ++ K A AL+L PTREL QV V A + K LK + +
Sbjct: 62 RLHSMPPLAAASGKRAVRALILTPTRELAAQVEESVRAYGKYLK----LKSTVMFGGVGI 117
Query: 144 SDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS-LKILVLDEADLLLSYGYEDDL 202
+ AL DIV+ATPG + L +Q K+ S L+ILVLDEAD +L G+ D+
Sbjct: 118 NPQIGALKSGVDIVVATPG---RLLDH--MQQKTIDLSHLEILVLDEADRMLDMGFIHDI 172
Query: 203 KALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWI 262
K + A +P Q LL SAT S ++ L +L +P ++ + + V K I
Sbjct: 173 KRVLAKLPPKRQNLLFSATFSDEIKALADNLLDSPALIEVARRNTTAETVAQK------I 226
Query: 263 SCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 322
+RDK +LT L + + L+FT T A RL L K GI + ++ Q++R
Sbjct: 227 HPVDRDKKRELLTHLIKQHNWFQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSAR 286
Query: 323 LHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDF 382
L EF G L+ATD RGID
Sbjct: 287 TRALAEFKDGTLQVLVATDI---------------------------------AARGIDI 313
Query: 383 KNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ V+NF++P YVHRIGRTGRA TG +VSLV DE+++ ++I+ +
Sbjct: 314 DQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLLKDIEKLI 366
>gi|225556564|gb|EEH04852.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces capsulatus G186AR]
Length = 485
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 138/432 (31%), Positives = 217/432 (50%), Gaps = 55/432 (12%)
Query: 11 EVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARA 70
E Q + EEA KSF++LG+ L A G + PT IQ SIPL L+G+D++ A
Sbjct: 47 ESPQVQREEAVT---KSFKDLGIIDSLCEACEALGYKSPTPIQAESIPLALQGRDLIGLA 103
Query: 71 KTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQV 130
+TGSGKT A+ LP+L L N+ P+S L+L PTREL Q+ AL L +
Sbjct: 104 ETGSGKTAAFALPILQALMNK--PQSLF---GLILAPTRELACQISEAFEALGSL----I 154
Query: 131 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDE 189
++ + M +L P I++ATPG + L +K FS +LK LV+DE
Sbjct: 155 SVRCAVIVGGMDMVSQAISLGKKPHIIVATPGRLLDHLEN----TKGFSLRNLKYLVMDE 210
Query: 190 ADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVK 249
AD LL + L + V+PR + L SAT SS V+ L++ L NP ++ + K
Sbjct: 211 ADRLLDLDFGPILDKILKVLPRERRTYLFSATMSSKVESLQRASLSNPLRVS---ISSNK 267
Query: 250 DEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIK 309
+ + +Q + + K +Y++ LL E + A++FT T++ RL + L G
Sbjct: 268 YQTVATLLQSYLF-IPHKYKDVYLVYLLN-EYAGQSAIVFTRTVNETQRLAILLRALGFG 325
Query: 310 SAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAK 369
S L+ +L Q+SRL L +F + D L+ATD
Sbjct: 326 SIPLHGQLSQSSRLGALSKFRSRSRDILVATDVA-------------------------- 359
Query: 370 LDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFE 429
RG+D +V V+NF++P ++ Y+HR+GRT RA +G + S+V+ +++++
Sbjct: 360 -------ARGLDIPSVDVVLNFDLPSDSKTYIHRVGRTARAGKSGHAFSIVTQYDIEVWL 412
Query: 430 EIKSFVGDDENE 441
I++ +G +E
Sbjct: 413 RIENALGKKLDE 424
>gi|410862930|ref|YP_006978164.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii AltDE1]
gi|410820192|gb|AFV86809.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii AltDE1]
Length = 480
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 137/412 (33%), Positives = 204/412 (49%), Gaps = 54/412 (13%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF +LGL L+ A+ K+G P+ IQ+ +IP +LEGKDV+A A+TG+GKT + LP+L
Sbjct: 2 SFTQLGLAEPLLKAIEKRGFSTPSPIQEKAIPEVLEGKDVLAAAQTGTGKTAGFGLPILQ 61
Query: 87 RLFNESSPK-SKLAPAALVLVPTRELCQQVYSEVMALIEL--CKGQVQLKVVQLTSSMPA 143
RL S PK S AL+L PTREL QV + A E K V V + M
Sbjct: 62 RLM--SGPKVSANNVRALILTPTRELAAQVEESICAFSEFLPLKTAVVFGGVGINPQM-- 117
Query: 144 SDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLK 203
LR + D++IATPG + ++ FS L++LVLDEAD +L G+ D+K
Sbjct: 118 IKLRKGV----DVLIATPGRLLDLYQQNAVK---FSQ-LEVLVLDEADRMLDMGFIHDIK 169
Query: 204 ALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWIS 263
+ ++P Q LL SAT S ++ L K I NP ++ D V+Q ++
Sbjct: 170 RVLKLLPEDRQSLLFSATFSDEITTLAKTITRNPVSISTAPANTTVDA-----VEQHLVT 224
Query: 264 CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+ K ++ L+K + + + L+F+ T A R+ L + I SA ++ Q +R
Sbjct: 225 IDKSKKTTALICLIKQQKWE-QVLVFSRTKHGANRIAEKLTRSKIPSAAIHGNKSQGART 283
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
L +F G L+ATD RGID
Sbjct: 284 KALADFKNGDIKVLVATDI---------------------------------AARGIDIS 310
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ V+N ++P AA YVHRIGRTGRA +G + S VS +E++ ++I++ +
Sbjct: 311 ELPIVVNLDLPNTAADYVHRIGRTGRAGASGQAWSFVSAEELQNLKDIETLI 362
>gi|410637091|ref|ZP_11347679.1| DEAD-box ATP-dependent RNA helicase cshA [Glaciecola lipolytica E3]
gi|410143470|dbj|GAC14884.1| DEAD-box ATP-dependent RNA helicase cshA [Glaciecola lipolytica E3]
Length = 412
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 136/413 (32%), Positives = 209/413 (50%), Gaps = 52/413 (12%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
+F LGL + +AL +KG +PT IQ +IP IL+ +DV+A A+TG+GKT ++LP+L
Sbjct: 2 TFNSLGLGQNIANALIEKGYNEPTPIQAQAIPAILDNQDVMAAAQTGTGKTAGFVLPILE 61
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIE--LCKGQVQLKVVQLTSSMPAS 144
+L + PK ALVL PTREL Q+ V A + + V V + M A
Sbjct: 62 KLSHHPRPKGNQV-NALVLTPTRELAAQISENVKAYSKNLNIRHTVVFGGVSINPQMMA- 119
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
LR + DI++ATPG + + Q D+L+ILVLDEAD +L G+ D+K
Sbjct: 120 -LRKGV----DILVATPGRLLDLYN----QKAVKFDNLQILVLDEADRMLDMGFIHDIKR 170
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264
+ ++P Q LL SAT S+ + +L K I++NP +++ D+V + I
Sbjct: 171 IIKLLPNSRQNLLFSATFSTQIRELAKSIVNNPVEISVAPANKTADKV------EQCIHP 224
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
++ K +LT + + + L+F+ T A RL L GI SA ++ Q +R
Sbjct: 225 VDKSKKSGLLTHIIKQQNMDQVLVFSRTKHGANRLAKQLTARGIVSAAIHGNKSQGARTK 284
Query: 325 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 384
L EF + L+ATD RG+D
Sbjct: 285 ALAEFKSSAIQVLVATDIA---------------------------------ARGLDIHQ 311
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
+ VIN+++P A YVHRIGRTGRA TG ++SLV+ +++K+ ++I+ +G+
Sbjct: 312 LPFVINYDLPHVAEDYVHRIGRTGRAGATGHAISLVTAEDIKLLKDIERVIGE 364
>gi|161504014|ref|YP_001571126.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:- str. RSK2980]
gi|160865361|gb|ABX21984.1| hypothetical protein SARI_02107 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
Length = 455
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 136/416 (32%), Positives = 209/416 (50%), Gaps = 60/416 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLL- 85
SF+ LGL+ ++ A+ ++G ++PT IQQ +IP +LEG+D++A A+TG+GKT + LPLL
Sbjct: 2 SFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 86 HRLFNESSPKSKLAPAALVLVPTRELCQQV------YSEVMALIELCKGQVQLKVVQLTS 139
H + ++ K + AL+L PTREL Q+ YS+ + + L V V +
Sbjct: 62 HLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSL----VVFGGVSINP 117
Query: 140 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE 199
M L G D+++ATPG + Q+ D ++ILVLDEAD +L G+
Sbjct: 118 QM------MKLRGGVDVLVATPGRLLDLEH----QNAVKLDQIEILVLDEADRMLDMGFI 167
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
D++ + A +P Q LL SAT S D+ L + +LHNP + + ++V Q
Sbjct: 168 HDIRRVLAKLPPKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQV----TQH 223
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+R + L L+LL + ++ L+FT T A L L K GI+SA ++ Q
Sbjct: 224 VHFVDKKRKREL--LSLLIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQ 281
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
+R L +F +G L+ATD RG
Sbjct: 282 GARTRALADFKSGDLRVLVATDIA---------------------------------ARG 308
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+D + + V+N+E+P YVHRIGRTGRA TG ++SLV DE K+ +I+ +
Sbjct: 309 LDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCIDEHKLLRDIEKLL 364
>gi|90408477|ref|ZP_01216636.1| ATP-dependent RNA helicase [Psychromonas sp. CNPT3]
gi|90310409|gb|EAS38535.1| ATP-dependent RNA helicase [Psychromonas sp. CNPT3]
Length = 426
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 140/416 (33%), Positives = 205/416 (49%), Gaps = 62/416 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF+ LGL L+ A+ ++G KP+ IQ+ +IP+IL GKDV+A A+TG+GKT + LPLL
Sbjct: 2 SFDSLGLPEELLRAVKEQGYTKPSPIQEQAIPVILSGKDVMAAAQTGTGKTAGFTLPLLA 61
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCK-GQ-VQLKVVQLTSSMPAS 144
L K+ L+L PTREL Q++ V C GQ + L+ + + +
Sbjct: 62 NLMKGERAKANQV-RVLILTPTRELAAQIHESV------CNYGQNLPLRSAVVFGGVKIN 114
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
L D+++ATPG + ++ K L++LVLDEAD +L G+ D+K
Sbjct: 115 PQMQLLRRGVDVLVATPGRLLDLYQQNAVRFK----QLEVLVLDEADRMLDMGFIHDIKR 170
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQ 259
+ +P Q LL SAT S+D+ KL K ++++P V+ V P+N V Q
Sbjct: 171 IIKFLPEKRQNLLFSATFSNDIRKLAKGLVNDP----------VEISVSPRNTTAESVTQ 220
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
F + K + TL+K E K+ L+F+ T A RL LE GI SA ++ Q
Sbjct: 221 FIYEVDKTKKSPLLSTLIK-ENKWKQVLVFSKTKHGANRLVKQLEGRGILSAAIHGNKSQ 279
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
+R L F G L+ATD RG
Sbjct: 280 AARTRALASFKEGKITVLVATDIA---------------------------------ARG 306
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
ID + V+NF++P + YVHRIGRTGRA N G ++SLV DE K+ ++I+ +
Sbjct: 307 IDIDQLEQVVNFDLPHVSEDYVHRIGRTGRAGNKGEAISLVCEDEFKLLKDIEKLI 362
>gi|291616016|ref|YP_003518758.1| DeaD [Pantoea ananatis LMG 20103]
gi|291151046|gb|ADD75630.1| DeaD [Pantoea ananatis LMG 20103]
Length = 633
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 135/409 (33%), Positives = 191/409 (46%), Gaps = 54/409 (13%)
Query: 25 EKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPL 84
+ +F ELGL+ L+ +LN G KP+ IQ IP +L G+DV+ A+TGSGKT A+ LPL
Sbjct: 8 QTTFAELGLNAELLESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPL 67
Query: 85 LHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
LH + P K AP LVL PTREL QV A+ E K L VV L
Sbjct: 68 LHNI----DPTVK-APQILVLAPTRELAVQVAE---AVTEFSKHMRGLNVVALYGGQRYD 119
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
AL P +V+ TPG + L G L +L+ LVLDEAD +L G+ +D++
Sbjct: 120 VQLRALRQGPQVVVGTPGRLLDHLKRGTLDLS----NLRGLVLDEADEMLRMGFIEDVET 175
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264
+ A IP G Q L SAT + ++ K + +P + + + P Q +W +
Sbjct: 176 IMAQIPEGHQTALFSATMPEAIRRITKRFMKDPQEVRIQSSMTTR----PDISQSYWTAY 231
Query: 265 SER-DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+ D L+ L + A+IF T + + LE+ G SA LN ++ Q R
Sbjct: 232 GRKTDALVRFLEAEDFD----AAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALRE 287
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
LE G D LIATD RG+D +
Sbjct: 288 QTLERLKDGRLDILIATDVA---------------------------------ARGLDVE 314
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432
+ V+N+++P +A YVHRIGRTGRA G ++ V E ++ I+
Sbjct: 315 RISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 363
>gi|257790938|ref|YP_003181544.1| DEAD/DEAH box helicase [Eggerthella lenta DSM 2243]
gi|257474835|gb|ACV55155.1| DEAD/DEAH box helicase domain protein [Eggerthella lenta DSM 2243]
Length = 414
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 132/414 (31%), Positives = 206/414 (49%), Gaps = 56/414 (13%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
+F++LGL + A+ + G PT +Q+ +IPL+LEG+DVVA A TG+GKT A+ LPL
Sbjct: 4 TFQDLGLSETTLSAVERMGFTAPTPVQEQAIPLVLEGRDVVAAATTGTGKTAAFALPLFE 63
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
R+ P S P ALV+ PTREL QQ+ + A +L K + + + + +
Sbjct: 64 RIGRAKRPGS---PRALVVSPTRELTQQIDA---ACTQLAKASNRRMLTVMGGTKYKGQI 117
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
A L D+++ATPG + + GV++ + +++LVLDEAD +L G+ +K +
Sbjct: 118 -AKLDRGIDVLVATPGRLYDLMERGVVKLRD----VEVLVLDEADRMLDMGFWPTMKKVV 172
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
A P Q LL SAT V + IL +P + + G+ D + QF I
Sbjct: 173 AATPSSRQTLLFSATLDRKVMQSVSSILKDPAFVEVSHKGETAD-----TIDQFMIPVGP 227
Query: 267 RDKLLYILTLLKLELVQ---KKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
K LL+L L Q K+ ++F +T A L++ G ++ ++++ Q R
Sbjct: 228 MKKP----ALLRLVLQQRGSKRVIVFADTKTRAEICTGQLKRAGFRADSIHSDKTQVQRK 283
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
LE F+ G D L+ATD + RGID
Sbjct: 284 RALEGFSKGAIDVLVATDV---------------------------------LARGIDVS 310
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437
N+ V+N+++P++ YVHRIGRTGRA TG ++S VSP+ +I+ +G+
Sbjct: 311 NIEYVVNYDLPESPEDYVHRIGRTGRAGETGYAISFVSPEAKAQLLDIEKLLGE 364
>gi|332142673|ref|YP_004428411.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii str. 'Deep
ecotype']
gi|327552695|gb|AEA99413.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii str. 'Deep
ecotype']
Length = 480
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 137/412 (33%), Positives = 204/412 (49%), Gaps = 54/412 (13%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF +LGL L+ A+ K+G P+ IQ+ +IP +LEGKDV+A A+TG+GKT + LP+L
Sbjct: 2 SFTQLGLAEPLLKAIEKRGFSTPSPIQEKAIPEVLEGKDVLAAAQTGTGKTAGFGLPILQ 61
Query: 87 RLFNESSPK-SKLAPAALVLVPTRELCQQVYSEVMALIEL--CKGQVQLKVVQLTSSMPA 143
RL S PK S AL+L PTREL QV + A E K V V + M
Sbjct: 62 RLM--SGPKVSANNVRALILTPTRELAAQVEESICAFSEFLPLKTAVVFGGVGINPQM-- 117
Query: 144 SDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLK 203
LR + D++IATPG + ++ FS L++LVLDEAD +L G+ D+K
Sbjct: 118 IKLRKGV----DVLIATPGRLLDLYQQNAVK---FSQ-LEVLVLDEADRMLDMGFIHDIK 169
Query: 204 ALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWIS 263
+ ++P Q LL SAT S ++ L K I NP ++ D V+Q ++
Sbjct: 170 RVLKLLPEDRQSLLFSATFSDEITTLAKTITRNPVSISTAPANTTVDA-----VEQHLVT 224
Query: 264 CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+ K ++ L+K + + + L+F+ T A R+ L + I SA ++ Q +R
Sbjct: 225 IDKSKKTTALICLIKQQKWE-QVLVFSRTKHGANRIAEKLTRSKIPSAAIHGNKSQGART 283
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
L +F G L+ATD RGID
Sbjct: 284 KALADFKNGDIKVLVATDI---------------------------------AARGIDIS 310
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ V+N ++P AA YVHRIGRTGRA +G + S VS +E++ ++I++ +
Sbjct: 311 ELPIVVNLDLPNTAADYVHRIGRTGRAGASGQAWSFVSAEELQNLKDIETLI 362
>gi|156973702|ref|YP_001444609.1| hypothetical protein VIBHAR_01406 [Vibrio harveyi ATCC BAA-1116]
gi|156525296|gb|ABU70382.1| hypothetical protein VIBHAR_01406 [Vibrio harveyi ATCC BAA-1116]
Length = 411
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 135/410 (32%), Positives = 207/410 (50%), Gaps = 50/410 (12%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F +LGL + A+ G +KPT IQQ +IP++L G++++A A+TG+GKT +++LP+L +
Sbjct: 3 FSKLGLSAPITDAVKALGYEKPTSIQQKAIPIVLSGRNLIAAAQTGTGKTASFVLPILEK 62
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
L + + K A A++L PTREL QV+ IE + L+ + + + + +
Sbjct: 63 LSQGETQRKKRA-RAIILTPTRELALQVHQS----IEAYGKNLPLRSMAMFGGVDYAPQK 117
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
AL DIV++TPG + Q D +++LVLDEAD +L G+ D + +
Sbjct: 118 QALIEGVDIVVSTPGRLIDLYG----QRAIHFDEVEMLVLDEADKMLDMGFIDSIDKIVD 173
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 267
+P Q LL SAT S+ V L K + +P E+ K N++Q WI+ ++
Sbjct: 174 CMPEDIQSLLFSATLSNPVRDLAKNAIVDP-----EEISIAKHSASKSNIKQ-WITTVDK 227
Query: 268 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 327
D +L+ + E + L+F T A +L LEK GI + ++ Q R ++E
Sbjct: 228 DMKSSLLSHMLNENDWSQVLVFIETKHGAAKLVTQLEKRGIVAEAFHSGRNQRVRQELIE 287
Query: 328 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGV-VRGIDFKNVH 386
+F AG YL+AT GV RGID N+
Sbjct: 288 QFKAGEIQYLVAT----------------------------------GVAARGIDIDNLP 313
Query: 387 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
VIN+++P A YVHRIGRTGRA G ++SLVS D+ K I+S +G
Sbjct: 314 VVINYDLPYPADEYVHRIGRTGRAGAQGEAISLVSKDDFKNLCMIESRLG 363
>gi|323495782|ref|ZP_08100852.1| DNA and RNA helicase [Vibrio sinaloensis DSM 21326]
gi|323319249|gb|EGA72190.1| DNA and RNA helicase [Vibrio sinaloensis DSM 21326]
Length = 399
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 137/411 (33%), Positives = 207/411 (50%), Gaps = 52/411 (12%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F +LGL + A+ G KPT IQ +IP I+ G+D++A A+TG+GKT +++LP+L +
Sbjct: 3 FSKLGLSKPITDAIQSLGYAKPTTIQNKAIPAIMHGEDLIAAAQTGTGKTASFVLPILEK 62
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQ-VQLKVVQLTSSMPASDL 146
L + + K AL+L PTREL +Q+ +V GQ + L + + +
Sbjct: 63 LAKGETQRKKRI-RALILAPTRELAEQIDQKVKQY-----GQNLSLTSLAMYGGVDEKPQ 116
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
+ AL DI+IATPG + + + + ++ILV+DEAD +L G+ DD+ +
Sbjct: 117 KQALIDGVDILIATPGRLLDLYG----KRAVYFEEVEILVMDEADRMLDMGFIDDINKIL 172
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
+P Q LL SAT S+ V L K +H+P+ E+ ++ KN++Q W+ +
Sbjct: 173 DRLPTDIQHLLFSATLSNKVRDLAKTAVHDPF-----EISIAANQASKKNIEQ-WLITVD 226
Query: 267 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
+DK +L+ L E +ALIF T A +L LEK GI + ++ Q R +L
Sbjct: 227 KDKKSALLSHLIKENDWDQALIFIETKHGAAKLASQLEKRGITAEAFHSGRSQAIRKQLL 286
Query: 327 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGV-VRGIDFKNV 385
+F AG Y+IAT GV RGID + +
Sbjct: 287 ADFKAGKIQYMIAT----------------------------------GVGARGIDIEGL 312
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
VIN+++P A YVHRIGRTGRA G ++S VS D K I+S +G
Sbjct: 313 SRVINYDLPFPADEYVHRIGRTGRADAQGEAISFVSKDNFKNLCMIESRLG 363
>gi|402565565|ref|YP_006614910.1| DEAD/DEAH box helicase [Burkholderia cepacia GG4]
gi|402246762|gb|AFQ47216.1| DEAD/DEAH box helicase domain protein [Burkholderia cepacia GG4]
Length = 489
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 143/412 (34%), Positives = 199/412 (48%), Gaps = 51/412 (12%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SFE LGL LV A+N+ G PT IQQ +IP +L G D++A A+TG+GKT + LP+L
Sbjct: 2 SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 87 RL--FNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
RL F +K A AL+L PTREL QV V A + K L+ + + +
Sbjct: 62 RLHTFYAEHRGAKRAIRALILTPTRELAAQVEESVRAYSKYLK----LRSTVMFGGVSIN 117
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLK 203
AL DIV+ATPG + +Q K+ +L ILVLDEAD +L G+ D+K
Sbjct: 118 PQIDALKRGVDIVVATPGRLLDH-----MQQKTIDLSNLDILVLDEADRMLDMGFIHDIK 172
Query: 204 ALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWIS 263
+ A +P Q LL SAT S ++ L +L +P ++ + + V K I
Sbjct: 173 RVLAKLPPERQNLLFSATFSDEIKALADNLLDSPALIEVARRNTTAESVAQK------IH 226
Query: 264 CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+RD+ +LT L E + L+FT T A RL L K GI + ++ Q++R
Sbjct: 227 PVDRDRKRELLTHLIREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSART 286
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
L EF L+ATD RGID
Sbjct: 287 RALAEFKNSTLQVLVATDI---------------------------------AARGIDID 313
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ V+NF++P YVHRIGRTGRA TG +VSLV DE ++ +I+ +
Sbjct: 314 QLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDIERLI 365
>gi|421563568|ref|ZP_16009387.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM2795]
gi|421907098|ref|ZP_16336986.1| DEAD-box ATP-dependent RNA helicase 42 [Neisseria meningitidis
alpha704]
gi|393292062|emb|CCI72959.1| DEAD-box ATP-dependent RNA helicase 42 [Neisseria meningitidis
alpha704]
gi|402341264|gb|EJU76451.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM2795]
Length = 457
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 129/412 (31%), Positives = 202/412 (49%), Gaps = 55/412 (13%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F +L LD ++ A++ +G + PT IQ +IP LEG+D++A A+TGSGKT A+LLP L R
Sbjct: 5 FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
L S K P ALVL PTREL QV +A K + V +
Sbjct: 65 LTKRSEKPGK-GPRALVLTPTRELAAQVEKNALA---YAKNMRWFRTVSIVGGASFGYQT 120
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
AL+ P D+++ATPG + + +G + F+ L++L+LDEAD +L G+ DD++ +
Sbjct: 121 RALSKPVDLIVATPGRLMDLMQSGKV---DFA-RLEVLILDEADRMLDMGFIDDIETIVE 176
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE- 266
P Q LL SAT V KL + + +P I+ + V D +++ + C +
Sbjct: 177 ATPSDRQTLLFSATWDGAVGKLARKLTKDPEIIEVERVDD------QGKIEEQLLYCDDM 230
Query: 267 --RDKLL-YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+++LL +IL ++ + +IFT+T M + L + G + L+ ++PQ R
Sbjct: 231 RHKNRLLDHILRDANID----QCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRN 286
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
L + G L+ATD RGID
Sbjct: 287 RTLMDLRKGRCKILVATDV---------------------------------AARGIDVP 313
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ VIN+++P+ A YVHRIGRTGRA TG +++ +E +I+ ++
Sbjct: 314 TITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYI 365
>gi|405122110|gb|AFR96877.1| ATP-dependent rRNA helicase RRP3 [Cryptococcus neoformans var.
grubii H99]
Length = 484
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 137/417 (32%), Positives = 206/417 (49%), Gaps = 53/417 (12%)
Query: 21 EAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAY 80
EA K+F +LG+ L A G +KP+ IQ +IP LEGKD++ A+TGSGKT A+
Sbjct: 33 EASHNKTFADLGISPELCRACASMGFKKPSDIQAEAIPHALEGKDIIGLAQTGSGKTAAF 92
Query: 81 LLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSS 140
LP+L L+ P ALVL PTREL Q+ +V +L + ++ L
Sbjct: 93 SLPILQTLWENPQPF-----FALVLAPTRELAYQISQQVTSL----GSGIGVRTAVLVGG 143
Query: 141 MPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYE 199
M AL+ P +++ATPG + L +K FS SLK LV+DEAD LL +
Sbjct: 144 MDMMSQSIALSKRPHVIVATPGRLMDHLE----NTKGFSLKSLKYLVMDEADRLLDLDFG 199
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
+ + VIP+ L SAT ++ V KL++ L+ P + EV V + Q
Sbjct: 200 PIIDKVLKVIPKERNTYLFSATMTTKVAKLQRASLNKPVRV---EVSSKYSTV--STLLQ 254
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
++ ++K Y+L L EL +IFT T+ + RL + L + G + L+ ++ Q
Sbjct: 255 HYLLLPLKNKDAYLLYLAN-ELSSSSMIIFTRTVADSQRLSIILRRLGFPAIPLHGQMTQ 313
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
+ RL L +F +G L+ATD RG
Sbjct: 314 SLRLASLNKFKSGGRSILVATDVAS---------------------------------RG 340
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
+D V VIN++MP N+ YVHR+GRT RA +G S++LV+ +++I + I+S +G
Sbjct: 341 LDIPLVDLVINYDMPTNSKDYVHRVGRTARAGRSGKSITLVTQYDVEILQRIESHIG 397
>gi|167569331|ref|ZP_02362205.1| ATP-dependent RNA helicase RhlE [Burkholderia oklahomensis C6786]
Length = 411
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 131/418 (31%), Positives = 214/418 (51%), Gaps = 58/418 (13%)
Query: 25 EKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPL 84
+ +F++ GL ++ A+ +G PT IQ +IP++L G+DV+ A+TG+GKT ++ LP+
Sbjct: 10 DATFDQFGLAAEILKAIADQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPI 69
Query: 85 LHRLFNESSPKSKLAPA-----ALVLVPTRELCQQVYSEVMALIELC--KGQVQLKVVQL 137
+ RL ++S + +PA AL+L PTREL QV + V A + + V V +
Sbjct: 70 IQRLLPQAS--TSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDM 127
Query: 138 TSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYG 197
M ++LR + +++IATPG L V Q + ++ILVLDEAD +L G
Sbjct: 128 NPQM--AELRRGV----EVLIATPG----RLLDHVQQKTANLGQVQILVLDEADRMLDMG 177
Query: 198 YEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNV 257
+ DL+ + ++P+ Q LL SAT S ++ KL L NP + + + NV
Sbjct: 178 FLPDLQRILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEV-----ARSNATATNV 232
Query: 258 QQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAEL 317
Q +E DK ++ L++ + K+ ++F N+ A RL +E+ GI ++ ++ +
Sbjct: 233 TQIVYDVAEGDKQAAVVKLIR-DRALKQVIVFCNSKIGASRLARQIERDGIVASAIHGDR 291
Query: 318 PQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVV 377
Q+ R+ L+ F G + L+ATD
Sbjct: 292 SQSERMQALDAFKRGEIEALVATDVA---------------------------------A 318
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
RG+D + VINF++P +A YVHRIGRTGRA +G ++SL SP+E K +I+ +
Sbjct: 319 RGLDIVELPAVINFDLPFSAEDYVHRIGRTGRAGASGDALSLCSPNERKQLADIEKLI 376
>gi|167835963|ref|ZP_02462846.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis MSMB43]
Length = 397
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 131/416 (31%), Positives = 212/416 (50%), Gaps = 54/416 (12%)
Query: 25 EKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPL 84
+ +F++ GL ++ A+ ++G PT IQ +IP++L G+DV+ A+TG+GKT ++ LP+
Sbjct: 10 DATFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPI 69
Query: 85 LHRLF---NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELC--KGQVQLKVVQLTS 139
+ RL N S+ ++ AL+L PTREL QV + V A + + V V +
Sbjct: 70 IQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNP 129
Query: 140 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE 199
M ++LR + +I+IATPG L V Q + ++ILVLDEAD +L G+
Sbjct: 130 QM--AELRRGV----EILIATPG----RLLDHVQQKTANLGQVQILVLDEADRMLDMGFL 179
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
DL+ + ++P+ Q LL SAT S ++ KL L +P + + + V Q
Sbjct: 180 PDLQRILNLLPKERQTLLFSATFSPEIKKLASTYLRDPQTIEV-----ARSNAAASTVTQ 234
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+E DK ++ L++ + K+ ++F N+ A RL +E+ GI +A ++ + Q
Sbjct: 235 IVYDVAEGDKQAAVVKLIR-DRSLKQVIVFCNSKIGASRLARQIERDGIVAAAIHGDRSQ 293
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
+ R+ L+ F G + L+ATD RG
Sbjct: 294 SERMQALDAFKRGEIEALVATD---------------------------------VAARG 320
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+D + VINF++P NA YVHRIGRTGRA +G ++SL SP+E K +I+ +
Sbjct: 321 LDIVELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLADIEKLI 376
>gi|58271466|ref|XP_572889.1| ATP-dependent RNA helicase [Cryptococcus neoformans var. neoformans
JEC21]
gi|134115044|ref|XP_773820.1| hypothetical protein CNBH2720 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338819312|sp|P0CR01.1|RRP3_CRYNB RecName: Full=ATP-dependent rRNA helicase RRP3
gi|338819313|sp|P0CR00.1|RRP3_CRYNJ RecName: Full=ATP-dependent rRNA helicase RRP3
gi|50256448|gb|EAL19173.1| hypothetical protein CNBH2720 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229148|gb|AAW45582.1| ATP-dependent RNA helicase, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 484
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 137/417 (32%), Positives = 202/417 (48%), Gaps = 53/417 (12%)
Query: 21 EAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAY 80
EA K+F +LG+ L A G +KP+ IQ +IP LEGKD++ A+TGSGKT A+
Sbjct: 33 EASHNKTFADLGISPELCRACASMGFKKPSDIQAEAIPHALEGKDIIGLAQTGSGKTAAF 92
Query: 81 LLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSS 140
LP+L L+ P ALVL PTREL Q+ +V +L + ++ L
Sbjct: 93 SLPILQTLWENPQPF-----FALVLAPTRELAYQISQQVTSL----GSGIGVRTAVLVGG 143
Query: 141 MPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYE 199
M AL+ P I++ATPG + L +K FS SLK LV+DEAD LL +
Sbjct: 144 MDMMSQSIALSKRPHIIVATPGRLMDHLE----NTKGFSLKSLKYLVMDEADRLLDLDFG 199
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
+ + VIP+ L SAT ++ V KL++ L+ P + EV V
Sbjct: 200 PIIDKILKVIPKERNTYLFSATMTTKVAKLQRASLNKPVRV---EVSSKYSTVSTLLQHY 256
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+ +D Y+L L EL +IFT T+ + RL + L + G + L+ ++ Q
Sbjct: 257 LLLPLKNKDA--YLLYLAN-ELSSSSMMIFTRTVADSQRLSIILRRLGFPAIPLHGQMTQ 313
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
+ RL L +F +G L+ATD RG
Sbjct: 314 SLRLASLNKFKSGGRSILVATDVAS---------------------------------RG 340
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
+D V VIN++MP N+ YVHR+GRT RA +G S++LV+ +++I + I+S +G
Sbjct: 341 LDIPLVDLVINYDMPTNSKDYVHRVGRTARAGRSGKSITLVTQYDVEILQRIESHIG 397
>gi|91785132|ref|YP_560338.1| ATP-dependent RNA helicase 1 [Burkholderia xenovorans LB400]
gi|91689086|gb|ABE32286.1| Putative ATP-dependent RNA helicase 1 [Burkholderia xenovorans
LB400]
Length = 543
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 145/415 (34%), Positives = 204/415 (49%), Gaps = 56/415 (13%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF+ LGL LV A+++ G PT IQ +IP +L G D++A A+TG+GKT + LP+L
Sbjct: 24 SFDSLGLSEPLVRAVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPILQ 83
Query: 87 RLFNESSP-----KSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSM 141
RL SSP K A AL+L PTREL QV V A + K LK + +
Sbjct: 84 RL--NSSPAVANGSGKRAVRALILTPTRELAAQVEESVRAYGKYLK----LKSTVMFGGV 137
Query: 142 PASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS-LKILVLDEADLLLSYGYED 200
+ AL DIV+ATPG + L +Q K+ S L+ILVLDEAD +L G+
Sbjct: 138 GINPQIGALRSGVDIVVATPG---RLLDH--MQQKTIDLSHLEILVLDEADRMLDMGFIH 192
Query: 201 DLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF 260
D+K + A +P Q LL SAT S ++ L +L +P ++ + + V K
Sbjct: 193 DIKRVLAKLPPKRQNLLFSATFSDEIKTLADNLLDSPALIEVARRNTTAETVAQK----- 247
Query: 261 WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 320
I +RDK +LT L + + L+FT T A RL L K GI + ++ Q+
Sbjct: 248 -IHPVDRDKKRELLTHLIKQHNWFQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQS 306
Query: 321 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 380
+R L EF G L+ATD RGI
Sbjct: 307 ARTRALAEFKDGTLQVLVATDI---------------------------------AARGI 333
Query: 381 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
D + V+N+++P YVHRIGRTGRA TG +VSLV DE+++ ++I+ +
Sbjct: 334 DIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLLKDIEKLI 388
>gi|429462585|ref|YP_007184048.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
crithidii (ex Angomonas deanei ATCC 30255)]
gi|429338099|gb|AFZ82522.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
crithidii (ex Angomonas deanei ATCC 30255)]
Length = 435
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 126/400 (31%), Positives = 199/400 (49%), Gaps = 50/400 (12%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F+ GLD L++++N G PT IQ+ +IP IL G+DV+ A+TG+GKT A++LP++++
Sbjct: 14 FDSFGLDQLLLNSINSIGYDTPTAIQEKAIPFILNGRDVLGAAQTGTGKTAAFVLPIINK 73
Query: 88 LF---NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144
+ N S+ ++ L+LVPTREL QVY V+ + L+ V L
Sbjct: 74 ILPYANSSTSPARHLLRVLILVPTRELANQVYDSVV----IYSKNTNLRSVVLFGGADHY 129
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
+ L +I++ATPG + + G L + +++I VLDEAD +L G+ D+
Sbjct: 130 NQENNLKLGCEILVATPGRLIAHIEQGNLHLQ----NIEIFVLDEADRMLDMGFMPDIDK 185
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264
+ + +P+ Q L SAT S + K+ L +P L + + D NV+Q
Sbjct: 186 IISKLPKNRQTLFFSATFSKFMRKIGMSYLKDPVELDITSPNSIAD-----NVEQLSYIV 240
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
R K+ ++++L +++ +IFTNT +L FL I+ ++ + Q R
Sbjct: 241 PNRFKMEAVVSILTARVLE-TIIIFTNTKLSTIKLTSFLRSSNIQCDSIHGDKSQLERTA 299
Query: 325 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 384
+LE F G+ L+ATD RG+D
Sbjct: 300 VLESFKNGILRVLVATD---------------------------------VAARGLDVLG 326
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE 424
+ VINF++P + YVHRIGRTGRA NTG ++SL+S DE
Sbjct: 327 ISCVINFDIPHSPEDYVHRIGRTGRANNTGVAISLISNDE 366
>gi|449308931|ref|YP_007441287.1| ATP-dependent RNA helicase RhlE [Cronobacter sakazakii SP291]
gi|449098964|gb|AGE86998.1| ATP-dependent RNA helicase RhlE [Cronobacter sakazakii SP291]
Length = 444
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 137/416 (32%), Positives = 206/416 (49%), Gaps = 60/416 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF+ LGL ++ A+ ++G +PT IQ+ +IP++L GKD++A A+TG+GKT + LPLL
Sbjct: 2 SFDSLGLSPEILRAIAEQGYNEPTPIQRQAIPVVLSGKDLMASAQTGTGKTAGFTLPLLQ 61
Query: 87 RLF-NESSPKSKLAPAALVLVPTRELCQQV------YSEVMALIELCKGQVQLKVVQLTS 139
RL N+ PK + AL+L PTREL QV YS+ + + L V V +
Sbjct: 62 RLTANQPHPKGRRPVRALILTPTRELAAQVGENVREYSKYLDIRSL----VVFGGVSINP 117
Query: 140 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE 199
M L G D++IATPG + Q+ D +++LVLDEAD +L G+
Sbjct: 118 QM------MKLRGGVDVLIATPGRLLDLEH----QNAVKLDQVEVLVLDEADRMLDMGFI 167
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
D++ + A +P Q LL SAT S D+ L + +LHNP EV + + V Q
Sbjct: 168 HDIRRVLAKLPPKRQNLLFSATFSDDIKSLAEKLLHNPE-----EVEVARRNTASEQVTQ 222
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+ ++ + +L+ L + ++ L+FT T A L L K GI +A ++ Q
Sbjct: 223 H-VHFVDKKRKRELLSYLIGDGNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQ 281
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
+R L +F G L+ATD RG
Sbjct: 282 GARTRALADFKTGGIRVLVATDIA---------------------------------ARG 308
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+D + + V+N+E+P YVHRIGRTGRA TG ++SLV DE K+ +I+ +
Sbjct: 309 LDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLL 364
>gi|336373869|gb|EGO02207.1| hypothetical protein SERLA73DRAFT_178026 [Serpula lacrymans var.
lacrymans S7.3]
gi|336386778|gb|EGO27924.1| hypothetical protein SERLADRAFT_462194 [Serpula lacrymans var.
lacrymans S7.9]
Length = 449
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 139/426 (32%), Positives = 210/426 (49%), Gaps = 63/426 (14%)
Query: 16 EEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSG 75
E EE+ A +F+ LGL L+ AL + + PT IQ IP LEGKD++ A TGSG
Sbjct: 5 ELEESSAAPPATFKSLGLIDSLLQALEQVNHKVPTDIQTEVIPHALEGKDIIGVASTGSG 64
Query: 76 KTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVV 135
KT A+ LP+L +L+ E PK A VL PTREL Q+ + E + ++
Sbjct: 65 KTAAFALPILQKLWEE--PKGLF---ACVLAPTRELAYQISQQ----FESLGSDMGVRCA 115
Query: 136 QLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLL 194
+ +P ALA P +V+ATPG + L ++K F +LK LVLDEAD LL
Sbjct: 116 VIVGGVPTVPQAVALAKKPHVVVATPGRLLWHLQ----ETKGFGLANLKFLVLDEADRLL 171
Query: 195 SYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIP 254
+ + + VIP+ L SAT +S V KL++ L NP V+ EV
Sbjct: 172 DMDFGQVIDDILKVIPKQRTTYLFSATMTSKVAKLQRASLKNP----------VRVEVAG 221
Query: 255 K-----NVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIK 309
K + Q+++ +DK + ++ L+ L Q +IFT T+ A RL + L G
Sbjct: 222 KYQTVSTLLQYYLFIPLKDKDVNLVYLVN-ALAQNSIIIFTRTVHDAARLTIVLRTLGFS 280
Query: 310 SAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAK 369
+ L+ +L Q+ RL L +F +G L+ATD
Sbjct: 281 AVPLHGQLSQSQRLGALAKFKSGGRKILVATDVAS------------------------- 315
Query: 370 LDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFE 429
RG+D +V VINF++P ++ Y+HR+GRT RA +G S++LV+ ++++ +
Sbjct: 316 --------RGLDIPSVDIVINFDIPTHSKDYIHRVGRTARAGRSGKSITLVTQYDVELVQ 367
Query: 430 EIKSFV 435
I+S +
Sbjct: 368 RIESVI 373
>gi|119496543|ref|XP_001265045.1| ATP-dependent RNA helicase , putative [Neosartorya fischeri NRRL
181]
gi|143462290|sp|A1D405.1|RRP3_NEOFI RecName: Full=ATP-dependent rRNA helicase rrp3
gi|119413207|gb|EAW23148.1| ATP-dependent RNA helicase , putative [Neosartorya fischeri NRRL
181]
Length = 472
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 136/425 (32%), Positives = 212/425 (49%), Gaps = 56/425 (13%)
Query: 17 EEEAEAEEE----KSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKT 72
++EA A E KSF++LG+ +L A G + PT IQ SIPL L+G+D++ A+T
Sbjct: 39 QDEAAATETRPAPKSFKDLGIIDQLCEACETMGYKAPTPIQAESIPLALQGRDLIGLAET 98
Query: 73 GSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQL 132
GSGKT A+ LP+L L + P+S L+L PTREL Q+ E + +
Sbjct: 99 GSGKTAAFALPILQALMEK--PQSFF---GLILAPTRELAFQISKS----FESLGSTINV 149
Query: 133 KVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEAD 191
+ + M AL P I++ATPG + L +K FS +LK LV+DEAD
Sbjct: 150 RCAVIVGGMDMVSQSIALGKKPHIIVATPGRLLDHLE----NTKGFSLRTLKYLVMDEAD 205
Query: 192 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 251
LL + L + V+PR + L SAT SS V+ L++ L NP ++ V K +
Sbjct: 206 RLLDMDFGPLLDKILKVLPRERRTFLFSATMSSKVESLQRASLSNPLRVS---VSSNKYQ 262
Query: 252 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 311
+ + Q ++ + K +Y++ LL E V + A+IFT T+ R+ L G +
Sbjct: 263 TV-STLLQSYLFLPHKHKDIYLVYLLN-EFVGQSAIIFTRTVHETQRISFLLRSLGFGAI 320
Query: 312 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLD 371
L+ +L Q++RL L +F + D L+ATD
Sbjct: 321 PLHGQLSQSARLGALGKFRSRSRDILVATDV----------------------------- 351
Query: 372 SEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 431
RG+D +V V+NF++P ++ YVHR+GRT RA +G ++S V+ +++I+ I
Sbjct: 352 ----AARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQYDVEIWLRI 407
Query: 432 KSFVG 436
+ +G
Sbjct: 408 EGALG 412
>gi|444425244|ref|ZP_21220689.1| hypothetical protein B878_04841 [Vibrio campbellii CAIM 519 = NBRC
15631]
gi|444241532|gb|ELU53055.1| hypothetical protein B878_04841 [Vibrio campbellii CAIM 519 = NBRC
15631]
Length = 411
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 135/410 (32%), Positives = 207/410 (50%), Gaps = 50/410 (12%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F +LGL + A+ G +KPT IQQ +IP++L G++++A A+TG+GKT +++LP+L +
Sbjct: 3 FSKLGLSSPITDAVKALGYEKPTSIQQKAIPIVLRGRNLIAAAQTGTGKTASFVLPILEK 62
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
L + + K A A++L PTREL QV+ IE + L+ + + + + +
Sbjct: 63 LSQGETQRKKRA-RAIILTPTRELALQVHQS----IEAYGKNLPLRSMAMFGGVDYAPQK 117
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
AL DIV++TPG + Q D +++LVLDEAD +L G+ D + +
Sbjct: 118 QALIDGVDIVVSTPGRLIDLYG----QRAIHFDEVEMLVLDEADKMLDMGFIDSIDKVVD 173
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 267
+P Q LL SAT S+ V L K + +P E+ K N++Q WI+ ++
Sbjct: 174 CMPEDIQSLLFSATLSNPVRDLAKNAIVDP-----EEISIAKHSASKSNIKQ-WITTVDK 227
Query: 268 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 327
D +L+ + E + L+F T A +L LEK GI + ++ Q R ++E
Sbjct: 228 DMKSSLLSHMLNENDWSQVLVFIETKHGAAKLVTQLEKRGIVAEAFHSGRNQRVRQELIE 287
Query: 328 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGV-VRGIDFKNVH 386
+F AG YL+AT GV RGID N+
Sbjct: 288 QFKAGEIQYLVAT----------------------------------GVAARGIDIDNLP 313
Query: 387 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
VIN+++P A YVHRIGRTGRA G ++SLVS D+ K I+S +G
Sbjct: 314 VVINYDLPYPADEYVHRIGRTGRAGAQGEAISLVSKDDFKNLCMIESRLG 363
>gi|421918244|ref|ZP_16347776.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
gi|410119452|emb|CCM90401.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
Length = 418
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 138/416 (33%), Positives = 209/416 (50%), Gaps = 60/416 (14%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF+ LGL+ ++ A+ ++G +PT IQQ +IP +L+G+D++A A+TG+GKT + LPLL
Sbjct: 2 SFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 87 RLF-NESSPKSKLAPAALVLVPTRELCQQV------YSEVMALIELCKGQVQLKVVQLTS 139
RL NE K + AL+L PTREL QV YS+ + + L V V +
Sbjct: 62 RLIQNEPHAKGRRPVRALILTPTRELAAQVGENVRDYSKYLNIRSL----VVFGGVSINP 117
Query: 140 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE 199
M L G DI++ATPG + Q+ D ++ILVLDEAD +L G+
Sbjct: 118 QM------MKLRGGVDILVATPGRLLDLEH----QNAVSLDKVEILVLDEADRMLDMGFI 167
Query: 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
D++ + A +P Q LL SAT S ++ L + +LHNP EV + + + Q
Sbjct: 168 HDIRRVLAKLPARRQNLLFSATFSDEIKGLAEKLLHNPL-----EVEVARRNTASEQITQ 222
Query: 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 319
+ ++++ +L+ L E ++ L+FT T A L L K GI+SA ++ Q
Sbjct: 223 H-VHFVDKNRKRELLSQLIGEGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQ 281
Query: 320 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379
+R L +F +G L+ATD RG
Sbjct: 282 GARTRALADFKSGGIRVLVATDIA---------------------------------ARG 308
Query: 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+D + + V+N+E+P YVHRIGRTGRA TG ++SLV DE K+ +I+ +
Sbjct: 309 LDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLL 364
>gi|389630538|ref|XP_003712922.1| ATP-dependent RNA helicase DRS1 [Magnaporthe oryzae 70-15]
gi|351645254|gb|EHA53115.1| ATP-dependent RNA helicase DRS1 [Magnaporthe oryzae 70-15]
Length = 799
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 131/404 (32%), Positives = 200/404 (49%), Gaps = 51/404 (12%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF+ + L ++ L G KPT IQ +IP+ L GKDVV A TGSGKT A+++P+L
Sbjct: 265 SFQSMSLSRPILRGLTSVGFAKPTPIQSKTIPIALMGKDVVGGAVTGSGKTAAFVVPILE 324
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
RL PK ++L PTREL Q ++ L + L V L+ + S+L
Sbjct: 325 RLLYR--PKKVPTSRVVILAPTRELAIQCHAVATKLASHTDIKFCLAVGGLSLKVQESEL 382
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKAL 205
R PD++IATPG + S SF+ D+++ILVLDEAD +L G+ D+L +
Sbjct: 383 RLR----PDVIIATPGRFIDHMR----NSASFAVDTVEILVLDEADRMLEDGFADELNEI 434
Query: 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF--WIS 263
+P+ Q +L SAT +S VD L ++ L+ P L + D + + + Q+F
Sbjct: 435 LTTLPKSRQTMLFSATMTSSVDNLIRVGLNKPVRLMV----DSQKKTVVTLTQEFVRLRP 490
Query: 264 CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
E ++ Y++ L K L ++ +IF +A ++ G+ A L+ + Q R+
Sbjct: 491 GREEKRMGYLVYLCK-NLYTERVIIFFRQKKIAHHARIIFGLLGLSCAELHGSMSQIQRI 549
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
+E F G +L+ATD L S RG+D K
Sbjct: 550 QSVEAFRDGKVSFLLATD----------------------------LAS-----RGLDIK 576
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 427
V TVIN+E PQ+ YVHR+GRT RA +G +++L + + K+
Sbjct: 577 GVDTVINYEAPQSLEIYVHRVGRTARAGRSGTAITLAAEPDRKV 620
>gi|340959217|gb|EGS20398.1| hypothetical protein CTHT_0022270 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 806
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 132/412 (32%), Positives = 202/412 (49%), Gaps = 52/412 (12%)
Query: 16 EEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSG 75
EE E + + +F+ + L ++ L G KPT IQ +IP+ L GKDVV A TGSG
Sbjct: 273 EETETKNGQASTFQSMNLSRPILRGLTSVGFTKPTPIQAQTIPIALMGKDVVGGAVTGSG 332
Query: 76 KTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVV 135
KT A+++P+L RL PK ++L PTREL Q ++ L + L V
Sbjct: 333 KTAAFVVPILERLLYR--PKKVPTTRVVILTPTRELAIQCHAVATKLAAYTDIKFCLAVG 390
Query: 136 QLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLL 194
L+ + ++LR PD+VIATPG + S SF+ D+++ILVLDEAD +L
Sbjct: 391 GLSLKVQEAELRLR----PDVVIATPGRFIDHMRN----SASFAVDTIEILVLDEADRML 442
Query: 195 SYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIP 254
G+ D+L + +P+ Q +L SAT +S VDKL ++ L+ P + + D + +
Sbjct: 443 EDGFADELNEILKTLPKSRQTMLFSATMTSSVDKLIRVGLNKPARIMV----DSQKKTAG 498
Query: 255 KNVQQF--WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAI 312
Q+F E ++ Y+L + K L ++ +IF +A ++ G+ A
Sbjct: 499 TLTQEFVRLRPGREGKRMGYLLYICK-NLYTERVIIFFRQKKVAHEARIIFGLHGLSCAE 557
Query: 313 LNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDS 372
L+ + Q R+ +E F G ++L+ATD
Sbjct: 558 LHGSMNQTQRIASVEAFRDGKVNFLLATDVAS---------------------------- 589
Query: 373 EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS-PD 423
RG+D K V TVIN+E PQ YVHR+GRT RA +G +++L + PD
Sbjct: 590 -----RGLDIKGVDTVINYEAPQTHEIYVHRVGRTARAGRSGTAITLAAEPD 636
>gi|15677233|ref|NP_274386.1| ATP-dependent RNA helicase [Neisseria meningitidis MC58]
gi|385328633|ref|YP_005882936.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
alpha710]
gi|385341717|ref|YP_005895588.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M01-240149]
gi|385853007|ref|YP_005899521.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
H44/76]
gi|385857437|ref|YP_005903949.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
NZ-05/33]
gi|416170381|ref|ZP_11608309.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
OX99.30304]
gi|416187461|ref|ZP_11614222.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M0579]
gi|416196318|ref|ZP_11618088.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
CU385]
gi|427828052|ref|ZP_18995071.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
H44/76]
gi|433465310|ref|ZP_20422792.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM422]
gi|433490690|ref|ZP_20447816.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM418]
gi|433505072|ref|ZP_20462011.1| helicase domain protein [Neisseria meningitidis 9506]
gi|433507373|ref|ZP_20464281.1| helicase domain protein [Neisseria meningitidis 9757]
gi|433509576|ref|ZP_20466445.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 12888]
gi|433511579|ref|ZP_20468406.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 4119]
gi|7226614|gb|AAF41742.1| putative ATP-dependent RNA helicase [Neisseria meningitidis MC58]
gi|308389485|gb|ADO31805.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
alpha710]
gi|316984178|gb|EFV63156.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
H44/76]
gi|325130443|gb|EGC53205.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
OX99.30304]
gi|325136474|gb|EGC59080.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M0579]
gi|325140412|gb|EGC62933.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
CU385]
gi|325200011|gb|ADY95466.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
H44/76]
gi|325201923|gb|ADY97377.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M01-240149]
gi|325208326|gb|ADZ03778.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
NZ-05/33]
gi|389605504|emb|CCA44421.1| DEAD-box ATP-dependent RNA helicase 42 [Neisseria meningitidis
alpha522]
gi|432203254|gb|ELK59308.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM422]
gi|432227681|gb|ELK83390.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM418]
gi|432241197|gb|ELK96727.1| helicase domain protein [Neisseria meningitidis 9506]
gi|432241738|gb|ELK97267.1| helicase domain protein [Neisseria meningitidis 9757]
gi|432246964|gb|ELL02410.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 12888]
gi|432247627|gb|ELL03064.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 4119]
Length = 462
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 128/412 (31%), Positives = 201/412 (48%), Gaps = 55/412 (13%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F +L LD ++ A++ +G + PT IQ +IP LEG+D++A A+TGSGKT A+LLP L +
Sbjct: 5 FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQK 64
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
L S K P ALVL PTREL QV +A K + V +
Sbjct: 65 LTKRSEKPGK-GPRALVLTPTRELAAQVEKNALA---YAKNMRWFRTVSIVGGASFGYQT 120
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
AL+ P D+++ATPG + + +G K + L++L+LDEAD +L G+ DD++ +
Sbjct: 121 RALSKPVDLIVATPGRLMDLMQSG----KVDFERLEVLILDEADRMLDMGFIDDIETIVE 176
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE- 266
P Q LL SAT V KL + + +P I+ + V D +++ + C +
Sbjct: 177 ATPSDRQTLLFSATWDGAVGKLARKLTKDPEIIEVERVDD------QGKIEEQLLYCDDM 230
Query: 267 --RDKLL-YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+++LL +IL ++ + +IFT+T M + L + G + L+ ++PQ R
Sbjct: 231 RHKNRLLDHILRDANID----QCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRN 286
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
L + G L+ATD RGID
Sbjct: 287 RTLMDLRKGRCKILVATDV---------------------------------AARGIDVP 313
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ VIN+++P+ A YVHRIGRTGRA TG +++ +E +I+ ++
Sbjct: 314 TITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYI 365
>gi|388602084|ref|ZP_10160480.1| hypothetical protein VcamD_19582 [Vibrio campbellii DS40M4]
Length = 411
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 135/410 (32%), Positives = 207/410 (50%), Gaps = 50/410 (12%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F +LGL + A+ G +KPT IQQ +IP++L G++++A A+TG+GKT +++LP+L +
Sbjct: 3 FSKLGLSAPITDAVKALGYEKPTSIQQKAIPIVLRGRNLIAAAQTGTGKTASFVLPILEK 62
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
L + + K A A++L PTREL QV+ IE + L+ + + + + +
Sbjct: 63 LSQGETQRKKRA-RAIILTPTRELALQVHQS----IEAYGKYLPLRSMAMFGGVDYAPQK 117
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
AL DIV++TPG + Q D +++LVLDEAD +L G+ D + +
Sbjct: 118 QALIDGVDIVVSTPGRLIDLYG----QRAIHFDEVEMLVLDEADKMLDMGFIDSIDKIVD 173
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 267
+P Q LL SAT S+ V L K + +P E+ K N++Q WI+ ++
Sbjct: 174 CMPEDIQSLLFSATLSNPVRDLAKNAIVDP-----EEISIAKHSASKSNIKQ-WITTVDK 227
Query: 268 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 327
D +L+ + E + L+F T A +L LEK GI + ++ Q R ++E
Sbjct: 228 DMKSSLLSHMLNENDWSQVLVFIETKHGAAKLVTQLEKRGIVAEAFHSGRNQRVRQELIE 287
Query: 328 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGV-VRGIDFKNVH 386
+F AG YL+AT GV RGID N+
Sbjct: 288 QFKAGEIQYLVAT----------------------------------GVAARGIDIDNLP 313
Query: 387 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
VIN+++P A YVHRIGRTGRA G ++SLVS D+ K I+S +G
Sbjct: 314 VVINYDLPYPADEYVHRIGRTGRAGAQGEAISLVSKDDFKNLCMIESRLG 363
>gi|119946865|ref|YP_944545.1| ATP-dependent RNA helicase [Psychromonas ingrahamii 37]
gi|119865469|gb|ABM04946.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
ingrahamii 37]
Length = 429
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 139/411 (33%), Positives = 205/411 (49%), Gaps = 52/411 (12%)
Query: 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLH 86
SF+ LGL L+ A+ ++G +P+ IQ +IP ILEGKDV+A A+TG+GKT + LPLL
Sbjct: 2 SFDLLGLPDSLLKAVKEQGYTEPSPIQAQAIPAILEGKDVMAAAQTGTGKTAGFTLPLLT 61
Query: 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIE--LCKGQVQLKVVQLTSSMPAS 144
L + PK ALVL PTREL QV++ V + + V V++ M
Sbjct: 62 LLEKGNRPKPNQV-RALVLTPTRELAAQVHASVATYGKNMPLRSAVVFGGVKINPQMQI- 119
Query: 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
LR + D+++ATPG + + + K L++L+LDEAD +L G+ D+K
Sbjct: 120 -LRQGV----DVLVATPGRLIDLYNQNAVSFK----QLEVLILDEADRMLDMGFIHDIKR 170
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264
+ AV+P+ Q LL SAT S D+ +L K +++NP E+ +NV Q
Sbjct: 171 ILAVLPKQRQNLLFSATFSPDIRRLAKGLVNNPV-----EISVSPRNTTAENVTQTVYEV 225
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
+ K + + TL+K Q + L+F T A RL LE GI +A ++ Q +R
Sbjct: 226 DKTKKSIVLSTLIKQNDWQ-QVLVFVKTKHGANRLVKSLEGRGITAAAIHGNKSQAARTR 284
Query: 325 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 384
L F G L+ATD RGID
Sbjct: 285 ALAGFKEGQVRALVATDIA---------------------------------ARGIDIDQ 311
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ V+NF++P + YVHRIGRTGRA N G ++SLV +E K+ ++I+ +
Sbjct: 312 LPQVVNFDLPHVSEDYVHRIGRTGRAGNEGQALSLVCNEEFKLLKDIEKLI 362
>gi|167562078|ref|ZP_02354994.1| ATP-dependent RNA helicase RhlE [Burkholderia oklahomensis EO147]
Length = 408
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 131/418 (31%), Positives = 214/418 (51%), Gaps = 58/418 (13%)
Query: 25 EKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPL 84
+ +F++ GL ++ A+ +G PT IQ +IP++L G+DV+ A+TG+GKT ++ LP+
Sbjct: 10 DATFDQFGLAAEILKAIADQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPI 69
Query: 85 LHRLFNESSPKSKLAPA-----ALVLVPTRELCQQVYSEVMALIELC--KGQVQLKVVQL 137
+ RL ++S + +PA AL+L PTREL QV + V A + + V V +
Sbjct: 70 IQRLLPQAS--TSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDM 127
Query: 138 TSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYG 197
M ++LR + +++IATPG L V Q + ++ILVLDEAD +L G
Sbjct: 128 NPQM--AELRRGV----EVLIATPG----RLLDHVQQKTANLGQVQILVLDEADRMLDMG 177
Query: 198 YEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNV 257
+ DL+ + ++P+ Q LL SAT S ++ KL L NP + + + NV
Sbjct: 178 FLPDLQRILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEV-----ARSNATATNV 232
Query: 258 QQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAEL 317
Q +E DK ++ L++ + K+ ++F N+ A RL +E+ GI ++ ++ +
Sbjct: 233 TQIVYDVAEGDKQAAVVKLIR-DRALKQVIVFCNSKIGASRLARQIERDGIVASAIHGDR 291
Query: 318 PQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVV 377
Q+ R+ L+ F G + L+ATD
Sbjct: 292 SQSERMQALDAFKRGEIEALVATDVA---------------------------------A 318
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
RG+D + VINF++P +A YVHRIGRTGRA +G ++SL SP+E K +I+ +
Sbjct: 319 RGLDIVELPAVINFDLPFSAEDYVHRIGRTGRAGASGDALSLCSPNERKQLADIEKLI 376
>gi|296314174|ref|ZP_06864115.1| putative ATP-dependent RNA helicase RhlE [Neisseria polysaccharea
ATCC 43768]
gi|296839180|gb|EFH23118.1| putative ATP-dependent RNA helicase RhlE [Neisseria polysaccharea
ATCC 43768]
Length = 457
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 128/412 (31%), Positives = 200/412 (48%), Gaps = 55/412 (13%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
F +L LD ++ A++ +G + PT IQ +IP LEG+D++A A+TGSGKT A+LLP L R
Sbjct: 5 FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
L S K P ALVL PTREL QV +A K + V +
Sbjct: 65 LTKRSEKPGK-GPRALVLTPTRELAAQVEKNALA---YAKNMRWFRTVSIVGGASFGYQT 120
Query: 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207
AL+ P D+++ATPG + + +G K L++L+LDEAD +L G+ DD++ +
Sbjct: 121 RALSKPVDLIVATPGRLMDLMQSG----KVDFGRLEVLILDEADRMLDMGFIDDIETIVE 176
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE- 266
P Q LL SAT V KL + + +P ++ + V D +++ + C +
Sbjct: 177 ATPSDRQTLLFSATWDGAVGKLARKLTKDPEVIEVERVDD------QGKIEEQLLYCDDM 230
Query: 267 --RDKLL-YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+++LL +IL ++ + +IFT+T M + L + G + L+ ++PQ R
Sbjct: 231 RHKNRLLDHILRDANID----QCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRN 286
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
L + G L+ATD RGID
Sbjct: 287 RTLMDLRKGRCKILVATDV---------------------------------AARGIDVP 313
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
+ VIN+++P+ A YVHRIGRTGRA TG +++ +E +I+ ++
Sbjct: 314 TITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYI 365
>gi|33240544|ref|NP_875486.1| superfamily II DNA/RNA helicase [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
gi|33238072|gb|AAQ00139.1| Superfamily II DNA/RNA helicase [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
Length = 603
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 143/497 (28%), Positives = 239/497 (48%), Gaps = 71/497 (14%)
Query: 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHR 87
FE G L+ L KG ++PT IQ+ASIP ++ G+D++ +A+TG+GKT A+ LPLL R
Sbjct: 53 FEGFGFSEALLKTLKNKGYEEPTPIQKASIPELMLGRDLLGQAQTGTGKTAAFALPLLER 112
Query: 88 LFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR 147
+ ++ P LVL PTREL QV A E G + ++ + SD R
Sbjct: 113 INSKER-----NPQVLVLTPTRELAMQVAESFKAYSE---GHANINILAVYG---GSDFR 161
Query: 148 A---ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204
+ +L +I++ TPG + + G L DSL+ LVLDEAD +L G+ DD++
Sbjct: 162 SQIYSLKRGVEIIVGTPGRVMDHIRQGTLN----QDSLQCLVLDEADEMLRMGFIDDIEW 217
Query: 205 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264
+ +P Q +L SAT ++ KL K L +P +T+ K E + ++Q +I+
Sbjct: 218 ILEQLPNERQMVLFSATMPPEIRKLSKRYLRDPAEITIKA---KKKEA--QLIRQHYITV 272
Query: 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 324
KL + +L+L + +IF T + +L LE A+LN ++PQN R
Sbjct: 273 QNSYKLEVLRRVLELNY-GEGVIIFARTKAITLKLAESLEASNHNVAVLNGDVPQNLRER 331
Query: 325 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 384
+E G + L+ATD RG+D +
Sbjct: 332 TVERLRQGGINILVATDVA---------------------------------ARGLDVER 358
Query: 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSN 444
+ VIN++MP ++ YVHRIGRTGRA +G ++ +SP E ++ VG
Sbjct: 359 IGLVINYDMPFDSEAYVHRIGRTGRAGRSGEAILFISPRERSYLNNLERAVGQS------ 412
Query: 445 IIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRN---EILNSEKLKAHFEVN 501
I + ++ + +R + + + + A ++ + Q+ N E++N ++++ E+
Sbjct: 413 -IERMEIPNNESINN--HRIQKIKRDLLTTASQKRKDQEETNLIKEVIN--EIESELEIT 467
Query: 502 PKDLDLLKHDKDLSKKP 518
PK++ L + + + P
Sbjct: 468 PKEIALAAINLSIGESP 484
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.315 0.133 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,092,898,308
Number of Sequences: 23463169
Number of extensions: 377234982
Number of successful extensions: 1666804
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 26147
Number of HSP's successfully gapped in prelim test: 3858
Number of HSP's that attempted gapping in prelim test: 1538250
Number of HSP's gapped (non-prelim): 63117
length of query: 605
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 456
effective length of database: 8,863,183,186
effective search space: 4041611532816
effective search space used: 4041611532816
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 80 (35.4 bits)