BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007402
(605 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And
Amp-Pnp
Length = 579
Score = 142 bits (358), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 125/420 (29%), Positives = 187/420 (44%), Gaps = 60/420 (14%)
Query: 33 LDLRLVHALNKKGIQKPTLIQQASIPLIL--EGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LD + A+ + T +QQ +I IL E DV+ARAKTG+GKTFA+L+P+ L N
Sbjct: 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLIN 87
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
+ S+ A+++ PTR+L Q+ +EV + ++ G LK S + +D RAA+
Sbjct: 88 -TKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYG---LKKYACVSLVGGTDFRAAM 143
Query: 151 AG----PPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
P+IVIATPG + L S F + VLDEAD LL G+ DDL+ +S
Sbjct: 144 NKMNKLRPNIVIATPGRLIDVLEK---YSNKFFRFVDYKVLDEADRLLEIGFRDDLETIS 200
Query: 207 AVIPR-------GCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
++ + LL SAT V KL I++ L L V + E + Q
Sbjct: 201 GILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQS 260
Query: 260 FWISCSERDKXXXXXXXXXXXXVQK----KALIFTNTIDM-AFRLKLFLEKFGIKSAIL- 313
IS + ++ KA+IF T+ +F + +F IL
Sbjct: 261 VVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILE 320
Query: 314 -NAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDS 372
+ ++ QN R +++ F L+ TD
Sbjct: 321 FHGKITQNKRTSLVKRFKKDESGILVCTD------------------------------- 349
Query: 373 EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432
G RG+DF NVH V+ +P A Y+HRIGRT R+ G+SV + DE+ E++
Sbjct: 350 -VG-ARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELE 407
>pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSO|B Chain B, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|B Chain B, Crystal Structure Of A Translation Initiation Complex
Length = 395
Score = 142 bits (358), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 124/407 (30%), Positives = 204/407 (50%), Gaps = 58/407 (14%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
+ LD L+ + G ++P+ IQQ +I I+EG DV+A+A++G+GKT + + L R+
Sbjct: 27 MELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRI-- 84
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
++S K AP AL+L PTREL Q+ VMAL +V + + A LR A
Sbjct: 85 DTSVK---APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDA- 140
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSF-SDSLKILVLDEADLLLSYGYEDDLKALSAVI 209
IV+ TPG + + Q + F +D +K+ +LDEAD +LS G+++ + + ++
Sbjct: 141 ----QIVVGTPGRVFDNI-----QRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLL 191
Query: 210 PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDK 269
P Q +L+SAT +DV ++ + NP + + KDE+ + ++QF+++ E +
Sbjct: 192 PPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVK-----KDELTLEGIKQFYVNVEEEEY 246
Query: 270 XXXXXXXXXXXXVQKKALIFTNTIDMAFRL--KLFLEKFGIKSAILNAELPQNSRLHILE 327
+A+IF NT L KL +KF + SAI ++LPQ R I++
Sbjct: 247 KYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTV-SAIY-SDLPQQERDTIMK 304
Query: 328 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 387
EF +G LI+TD + RGID + V
Sbjct: 305 EFRSGSSRILISTD---------------------------------LLARGIDVQQVSL 331
Query: 388 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 434
VIN+++P N Y+HRIGR GR G +++ V+ +++ E++ F
Sbjct: 332 VINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKF 378
>pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp
pdb|3I5Y|A Chain A, Structure Of Mss116p Bound To Ssrna Containing A Single
5-Bru And Amp- Pnp
pdb|3I61|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-beryllium
Fluoride
pdb|3I62|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-aluminum
Fluoride
Length = 563
Score = 141 bits (355), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 125/420 (29%), Positives = 187/420 (44%), Gaps = 60/420 (14%)
Query: 33 LDLRLVHALNKKGIQKPTLIQQASIPLIL--EGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LD + A+ + T +QQ +I IL E DV+ARAKTG+GKTFA+L+P+ L N
Sbjct: 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLIN 138
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
+ S+ A+++ PTR+L Q+ +EV + ++ G LK S + +D RAA+
Sbjct: 139 -TKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYG---LKKYACVSLVGGTDFRAAM 194
Query: 151 AG----PPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
P+IVIATPG + L S F + VLDEAD LL G+ DDL+ +S
Sbjct: 195 NKMNKLRPNIVIATPGRLIDVLEK---YSNKFFRFVDYKVLDEADRLLEIGFRDDLETIS 251
Query: 207 AVIPR-------GCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
++ + LL SAT V KL I++ L L V + E + Q
Sbjct: 252 GILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQS 311
Query: 260 FWISCSERDKXXXXXXXXXXXXVQK----KALIFTNTIDM-AFRLKLFLEKFGIKSAIL- 313
IS + ++ KA+IF T+ +F + +F IL
Sbjct: 312 VVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILE 371
Query: 314 -NAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDS 372
+ ++ QN R +++ F L+ TD
Sbjct: 372 FHGKITQNKRTSLVKRFKKDESGILVCTD------------------------------- 400
Query: 373 EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432
G RG+DF NVH V+ +P A Y+HRIGRT R+ G+SV + DE+ E++
Sbjct: 401 -VG-ARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELE 458
>pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion)
Bound To Ssrna And Amp-Pnp
Length = 512
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 124/420 (29%), Positives = 186/420 (44%), Gaps = 60/420 (14%)
Query: 33 LDLRLVHALNKKGIQKPTLIQQASIPLIL--EGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LD + A+ + T +QQ +I IL E DV+ARAKTG+GKTFA+L+P+ L N
Sbjct: 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLIN 87
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
+ S+ A+++ PTR+L Q+ +EV + ++ G LK S + +D RAA+
Sbjct: 88 -TKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYG---LKKYACVSLVGGTDFRAAM 143
Query: 151 AG----PPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
P+IVIATPG + L S F + VLDEAD LL G+ DDL+ +S
Sbjct: 144 NKMNKLRPNIVIATPGRLIDVLEK---YSNKFFRFVDYKVLDEADRLLEIGFRDDLETIS 200
Query: 207 AVIPR-------GCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259
++ + LL SAT V KL I++ L L V + E + Q
Sbjct: 201 GILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQS 260
Query: 260 FWISCSERDKXXXXXXXXXXXXVQK----KALIFTNTIDM-AFRLKLFLEKFGIKSAIL- 313
IS + ++ KA+IF T+ +F + +F IL
Sbjct: 261 VVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILE 320
Query: 314 -NAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDS 372
+ ++ QN R +++ F L+ TD
Sbjct: 321 FHGKITQNKRTSLVKRFKKDESGILVCTDVG----------------------------- 351
Query: 373 EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432
RG+DF NVH V+ +P A Y+HRIGRT R+ G+SV + DE+ E++
Sbjct: 352 ----ARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELE 407
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
Length = 367
Score = 139 bits (350), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 115/397 (28%), Positives = 182/397 (45%), Gaps = 60/397 (15%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGK-DVVARAKTGSGKTFAYLLPLLHRLF 89
L L +++A+ KG +KPT IQ IPL L + ++VA+A+TGSGKT ++ +PL+ L
Sbjct: 11 LNLSDNILNAIRNKGFEKPTDIQXKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIE-LV 69
Query: 90 NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAA 149
NE++ A++L PTREL QV E+ +L KG LK+ ++ A
Sbjct: 70 NENN-----GIEAIILTPTRELAIQVADEIESL----KGNKNLKIAKIYGGKAIYPQIKA 120
Query: 150 LAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVI 209
L +IV+ TPG + ++ G L K ++K +LDEAD L+ G+ D++ +
Sbjct: 121 LKN-ANIVVGTPGRILDHINRGTLNLK----NVKYFILDEADEXLNXGFIKDVEKILNAC 175
Query: 210 PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDK 269
+ + LL SAT ++ L K + + I N++Q ++ +E ++
Sbjct: 176 NKDKRILLFSATXPREILNLAKKYXGDYSFIKAK---------INANIEQSYVEVNENER 226
Query: 270 XXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 329
L+F T L L G K+ ++ +L Q+ R ++ F
Sbjct: 227 FEALCRLLKNKEFY--GLVFCKTKRDTKELASXLRDIGFKAGAIHGDLSQSQREKVIRLF 284
Query: 330 NAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVI 389
LIATD V S RGID +++ VI
Sbjct: 285 KQKKIRILIATD---------------VXS------------------RGIDVNDLNCVI 311
Query: 390 NFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMK 426
N+ +PQN Y HRIGRTGRA G ++S+++ E K
Sbjct: 312 NYHLPQNPESYXHRIGRTGRAGKKGKAISIINRREYK 348
>pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0Q|B Chain B, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0S|A Chain A, The Crystal Structure Of The Exon Junction Complex At 2.2
A Resolution
Length = 410
Score = 139 bits (350), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 100/404 (24%), Positives = 192/404 (47%), Gaps = 51/404 (12%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
+GL L+ + G +KP+ IQQ +I I++G+DV+A++++G+GKT + + +L L
Sbjct: 42 MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI 101
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
+ AL+L PTREL Q+ ++AL + Q + + D+R
Sbjct: 102 QVRETQ-----ALILAPTRELAVQIQKGLLALGDYMNVQCH---ACIGGTNVGEDIRKLD 153
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 210
G +V TPG + + L+++ ++K+LVLDEAD +L+ G+++ + + +P
Sbjct: 154 YG-QHVVAGTPGRVFDMIRRRSLRTR----AIKMLVLDEADEMLNKGFKEQIYDVYRYLP 208
Query: 211 RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKX 270
Q +L+SAT ++ ++ + +P + + +DE+ + ++QF+++ +
Sbjct: 209 PATQVVLISATLPHEILEMTNKFMTDPIRILVK-----RDELTLEGIKQFFVAVEREEWK 263
Query: 271 XXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 330
+A+IF NT L + + + ++ ++PQ R I++EF
Sbjct: 264 FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 323
Query: 331 AGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN 390
+G LI+TD RG+D V +IN
Sbjct: 324 SGASRVLISTD---------------------------------VWARGLDVPQVSLIIN 350
Query: 391 FEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 434
+++P N Y+HRIGR+GR G +++ V D+++I +I+ +
Sbjct: 351 YDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQY 394
>pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
pdb|2XB2|X Chain X, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
Length = 411
Score = 139 bits (350), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 100/404 (24%), Positives = 192/404 (47%), Gaps = 51/404 (12%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
+GL L+ + G +KP+ IQQ +I I++G+DV+A++++G+GKT + + +L L
Sbjct: 43 MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI 102
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
+ AL+L PTREL Q+ ++AL + Q + + D+R
Sbjct: 103 QVRETQ-----ALILAPTRELAVQIQKGLLALGDYMNVQCH---ACIGGTNVGEDIRKLD 154
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 210
G +V TPG + + L+++ ++K+LVLDEAD +L+ G+++ + + +P
Sbjct: 155 YG-QHVVAGTPGRVFDMIRRRSLRTR----AIKMLVLDEADEMLNKGFKEQIYDVYRYLP 209
Query: 211 RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKX 270
Q +L+SAT ++ ++ + +P + + +DE+ + ++QF+++ +
Sbjct: 210 PATQVVLISATLPHEILEMTNKFMTDPIRILVK-----RDELTLEGIKQFFVAVEREEWK 264
Query: 271 XXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 330
+A+IF NT L + + + ++ ++PQ R I++EF
Sbjct: 265 FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 324
Query: 331 AGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN 390
+G LI+TD RG+D V +IN
Sbjct: 325 SGASRVLISTD---------------------------------VWARGLDVPQVSLIIN 351
Query: 391 FEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 434
+++P N Y+HRIGR+GR G +++ V D+++I +I+ +
Sbjct: 352 YDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQY 395
>pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|2HYI|I Chain I, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|3EX7|C Chain C, The Crystal Structure Of Ejc In Its Transition State
pdb|3EX7|H Chain H, The Crystal Structure Of Ejc In Its Transition State
Length = 413
Score = 139 bits (349), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 100/404 (24%), Positives = 192/404 (47%), Gaps = 51/404 (12%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
+GL L+ + G +KP+ IQQ +I I++G+DV+A++++G+GKT + + +L L
Sbjct: 43 MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI 102
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
+ AL+L PTREL Q+ ++AL + Q + + D+R
Sbjct: 103 QVRETQ-----ALILAPTRELAVQIQKGLLALGDYMNVQCH---ACIGGTNVGEDIRKLD 154
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 210
G +V TPG + + L+++ ++K+LVLDEAD +L+ G+++ + + +P
Sbjct: 155 YG-QHVVAGTPGRVFDMIRRRSLRTR----AIKMLVLDEADEMLNKGFKEQIYDVYRYLP 209
Query: 211 RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKX 270
Q +L+SAT ++ ++ + +P + + +DE+ + ++QF+++ +
Sbjct: 210 PATQVVLISATLPHEILEMTNKFMTDPIRILVK-----RDELTLEGIKQFFVAVEREEWK 264
Query: 271 XXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 330
+A+IF NT L + + + ++ ++PQ R I++EF
Sbjct: 265 FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 324
Query: 331 AGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN 390
+G LI+TD RG+D V +IN
Sbjct: 325 SGASRVLISTD---------------------------------VWARGLDVPQVSLIIN 351
Query: 391 FEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 434
+++P N Y+HRIGR+GR G +++ V D+++I +I+ +
Sbjct: 352 YDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQY 395
>pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna
Helicase From Sulfolobus Tokodaii
Length = 337
Score = 139 bits (349), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 117/395 (29%), Positives = 185/395 (46%), Gaps = 82/395 (20%)
Query: 33 LDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNES 92
++ ++ A+ + G + T +Q +IPL+L+GK+VV RAKTGSGKT AY +P+L
Sbjct: 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPIL------- 53
Query: 93 SPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMP----ASDLRA 148
+L +LV+ PTREL +QV S + + + KV ++ MP + +R
Sbjct: 54 ----ELGMKSLVVTPTRELTRQVASHIRDI----GRYMDTKVAEVYGGMPYKAQINRVRN 105
Query: 149 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 208
A DIV+ATPG + S GV+ SF +I+++DEADL+ G+ DD+K + A
Sbjct: 106 A-----DIVVATPGRLLDLWSKGVIDLSSF----EIVIIDEADLMFEMGFIDDIKIILAQ 156
Query: 209 IPRGCQCLLMSATSSSDVDK-LKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 267
L SAT ++ K +K I + I + +V+ + + +V+ W S +
Sbjct: 157 TSNRKITGLFSATIPEEIRKVVKDFITNYEEIEACIGLANVEHKFV--HVKDDWRSKVQA 214
Query: 268 DKXXXXXXXXXXXXVQKKALIFTNTIDMAFRL-KLFLEKFGIKSAI-LNAELPQNSRLHI 325
+ K ++F T + +L +LF +AI L +LPQ+ R
Sbjct: 215 LRENK----------DKGVIVFVRTRNRVAKLVRLF------DNAIELRGDLPQSVRNRN 258
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
++ F G +D LI TD RG+D V
Sbjct: 259 IDAFREGEYDMLITTDVAS---------------------------------RGLDIPLV 285
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLV 420
VINF+ PQ+ Y+HRIGRTGR G +++ +
Sbjct: 286 EKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFI 320
>pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 139 bits (349), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 102/404 (25%), Positives = 192/404 (47%), Gaps = 51/404 (12%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
+GL L+ + G +KP+ IQQ +I I++G+DV+A++++G+GKT + + +L L
Sbjct: 6 MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQCLDI 65
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
+ AL+L PTREL QV ++AL + Q + + D+R
Sbjct: 66 QVRETQ-----ALILAPTRELAVQVQKGLLALGDYMNVQSH---ACIGGTNVGEDIRKLD 117
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 210
G +V TPG + + L+++ ++K+LVLDEAD +L+ G+++ + + +P
Sbjct: 118 YG-QHVVAGTPGRVFDMIRRRSLRTR----AIKMLVLDEADEMLNKGFKEQIYDVYRYLP 172
Query: 211 RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKX 270
Q +L+SAT +V ++ + +P + + +DE+ + ++QF+++ +
Sbjct: 173 PATQVVLISATLPHEVLEMTNKFMTDPIRILVK-----RDELTLEGIKQFFVAVEREEWK 227
Query: 271 XXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 330
+A+IF NT L + + + ++ ++PQ R I++EF
Sbjct: 228 FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 287
Query: 331 AGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN 390
+G LI+TD RG+D V +IN
Sbjct: 288 SGASRVLISTDVW---------------------------------ARGLDVPQVSLIIN 314
Query: 391 FEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 434
+++P N Y+HRIGR+GR G +V+ V D++++ +I+ +
Sbjct: 315 YDLPNNRELYIHRIGRSGRYGRKGVAVNFVKNDDIRVLRDIEQY 358
>pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 139 bits (349), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 101/404 (25%), Positives = 192/404 (47%), Gaps = 51/404 (12%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
+GL L+ + G +KP+ IQQ +I I++G+DV+A++++G+GKT + + +L L
Sbjct: 6 MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQCLDI 65
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
+ AL+L PTREL QV ++AL + Q + + D+R
Sbjct: 66 QVRETQ-----ALILAPTRELAVQVQKGLLALGDYMNVQCH---ACIGGTNVGEDIRKLD 117
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 210
G +V TPG + + L+++ ++K+LVLDEAD +L+ G+++ + + +P
Sbjct: 118 YG-QHVVAGTPGRVFDMIRRRSLRTR----AIKMLVLDEADEMLNKGFKEQIYDVYRYLP 172
Query: 211 RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKX 270
Q +L+SAT ++ ++ + +P + + +DE+ + ++QF+++ +
Sbjct: 173 PATQVVLISATLPHEILEMTNKFMTDPIRILVK-----RDELTLEGIKQFFVAVEREEWK 227
Query: 271 XXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 330
+A+IF NT L + + + ++ ++PQ R I++EF
Sbjct: 228 FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 287
Query: 331 AGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN 390
+G LI+TD RG+D V +IN
Sbjct: 288 SGASRVLISTDVW---------------------------------ARGLDVPQVSLIIN 314
Query: 391 FEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 434
+++P N Y+HRIGR+GR G +V+ V D++++ +I+ +
Sbjct: 315 YDLPNNRELYIHRIGRSGRYGRKGVAVNFVKNDDIRVLRDIEQY 358
>pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|B Chain B, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|C Chain C, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|D Chain D, Crystal Structure Of Human Apo-Eif4aiii
Length = 391
Score = 138 bits (348), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 100/404 (24%), Positives = 192/404 (47%), Gaps = 51/404 (12%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
+GL L+ + G +KP+ IQQ +I I++G+DV+A++++G+GKT + + +L L
Sbjct: 21 MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI 80
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
+ AL+L PTREL Q+ ++AL + Q + + D+R
Sbjct: 81 QVRETQ-----ALILAPTRELAVQIQKGLLALGDYMNVQCH---ACIGGTNVGEDIRKLD 132
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 210
G +V TPG + + L+++ ++K+LVLDEAD +L+ G+++ + + +P
Sbjct: 133 YG-QHVVAGTPGRVFDMIRRRSLRTR----AIKMLVLDEADEMLNKGFKEQIYDVYRYLP 187
Query: 211 RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKX 270
Q +L+SAT ++ ++ + +P + + +DE+ + ++QF+++ +
Sbjct: 188 PATQVVLISATLPHEILEMTNKFMTDPIRILVK-----RDELTLEGIKQFFVAVEREEWK 242
Query: 271 XXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 330
+A+IF NT L + + + ++ ++PQ R I++EF
Sbjct: 243 FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 302
Query: 331 AGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN 390
+G LI+TD RG+D V +IN
Sbjct: 303 SGASRVLISTD---------------------------------VWARGLDVPQVSLIIN 329
Query: 391 FEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 434
+++P N Y+HRIGR+GR G +++ V D+++I +I+ +
Sbjct: 330 YDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQY 373
>pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p
Length = 400
Score = 135 bits (341), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 107/389 (27%), Positives = 177/389 (45%), Gaps = 55/389 (14%)
Query: 37 LVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKS 96
L+ + + G +KP+ IQ+ +IP+ + G+D++ARAK G+GKT A+++P L ++ K
Sbjct: 32 LLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKV------KP 85
Query: 97 KLAPA-ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPD 155
KL AL++VPTREL Q V L + C + + T D L
Sbjct: 86 KLNKIQALIMVPTRELALQTSQVVRTLGKHCG----ISCMVTTGGTNLRDDILRLNETVH 141
Query: 156 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQC 215
I++ TPG + L + SD + ++DEAD +LS ++ ++ + + +P Q
Sbjct: 142 ILVGTPG---RVLDLASRKVADLSDC-SLFIMDEADKMLSRDFKTIIEQILSFLPPTHQS 197
Query: 216 LLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXX 275
LL SAT V + LH PY + L E E+ K + Q++ ER K
Sbjct: 198 LLFSATFPLTVKEFMVKHLHKPYEINLME------ELTLKGITQYYAFVEERQKLHCLNT 251
Query: 276 XXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFD 335
+ +A+IF N+ + L + G +A + Q R + EF G
Sbjct: 252 LFSKLQIN-QAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVR 310
Query: 336 YLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQ 395
L+ +D + RGID + V+ VINF+ P+
Sbjct: 311 TLVCSD---------------------------------LLTRGIDIQAVNVVINFDFPK 337
Query: 396 NAAGYVHRIGRTGRAYNTGASVSLVSPDE 424
A Y+HRIGR+GR + G +++L++ ++
Sbjct: 338 TAETYLHRIGRSGRFGHLGLAINLINWND 366
>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|D Chain D, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 479
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 114/413 (27%), Positives = 192/413 (46%), Gaps = 64/413 (15%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEG--KDVVARAKTGSGKTFAYLLPLLHRL 88
L L +L+ + G +P+ IQ+ ++PL+L ++++A++++G+GKT A++L +L ++
Sbjct: 97 LRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQV 156
Query: 89 FNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRA 148
P +K P L L PT EL Q + ++ K +LK L ++ + L
Sbjct: 157 ----EPANKY-PQCLCLSPTYELALQTGK---VIEQMGKFYPELK---LAYAVRGNKLER 205
Query: 149 ALAGPPDIVIATPG-CMPKCLSTGVLQSKSFSDSLKILVLDEADLLL-SYGYEDDLKALS 206
IVI TPG + C + K +K+ VLDEAD+++ + G++D +
Sbjct: 206 GQKISEQIVIGTPGTVLDWCSKLKFIDPKK----IKVFVLDEADVMIATQGHQDQSIRIQ 261
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
++PR CQ LL SAT V K + ++ +P ++ L ++E ++Q+++ CS
Sbjct: 262 RMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK-----REEETLDTIKQYYVLCSS 316
Query: 267 RDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
RD+ +A+IF +T A L L K G + A+L+ E+ R ++
Sbjct: 317 RDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVI 376
Query: 327 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 386
E F G L+ T+ RGID + V
Sbjct: 377 ERFREGKEKVLVTTN---------------------------------VCARGIDVEQVS 403
Query: 387 TVINFEMPQNAAG------YVHRIGRTGRAYNTGASVSLV-SPDEMKIFEEIK 432
VINF++P + G Y+HRIGRTGR G +V++V S M I I+
Sbjct: 404 VVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQ 456
>pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|B Chain B, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|C Chain C, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|D Chain D, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
Length = 434
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 113/399 (28%), Positives = 178/399 (44%), Gaps = 60/399 (15%)
Query: 34 DLR--LVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNE 91
DLR ++ +NK G + PT IQ+ SIP+I G+D++A A+TGSGKT A+LLP+L +L +
Sbjct: 62 DLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLED 121
Query: 92 SSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALA 151
P +++ PTREL Q+++E + LK+ + +
Sbjct: 122 PHELELGRPQVVIVSPTRELAIQIFNEARKF----AFESYLKIGIVYGGTSFRHQNECIT 177
Query: 152 GPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL-KALSAVIP 210
+VIATPG + + + +F D+ + +VLDEAD +L G+ +D+ + ++ V
Sbjct: 178 RGCHVVIATPGRLLDFVDRTFI---TFEDT-RFVVLDEADRMLDMGFSEDMRRIMTHVTM 233
Query: 211 R-GCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVG----DVKDEVIPKNVQQFWISCS 265
R Q L+ SAT ++ ++ L N + + VG DVK + N +
Sbjct: 234 RPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVN------KYA 287
Query: 266 ERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325
+R K ++F T A L FL + + ++ + Q+ R
Sbjct: 288 KRSKLIEILSEQA-----DGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQA 342
Query: 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385
L +F G LIAT RG+D KN+
Sbjct: 343 LRDFKNGSMKVLIATSVAS---------------------------------RGLDIKNI 369
Query: 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE 424
VIN++MP YVHRIGRTGR N G + S P++
Sbjct: 370 KHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEK 408
>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
pdb|3EWS|B Chain B, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
Length = 445
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 114/413 (27%), Positives = 192/413 (46%), Gaps = 64/413 (15%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEG--KDVVARAKTGSGKTFAYLLPLLHRL 88
L L +L+ + G +P+ IQ+ ++PL+L ++++A++++G+GKT A++L +L ++
Sbjct: 67 LRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQV 126
Query: 89 FNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRA 148
P +K P L L PT EL Q + ++ K +LK L ++ + L
Sbjct: 127 ----EPANKY-PQCLCLSPTYELALQTGK---VIEQMGKFYPELK---LAYAVRGNKLER 175
Query: 149 ALAGPPDIVIATPG-CMPKCLSTGVLQSKSFSDSLKILVLDEADLLL-SYGYEDDLKALS 206
IVI TPG + C + K +K+ VLDEAD+++ + G++D +
Sbjct: 176 GQKISEQIVIGTPGTVLDWCSKLKFIDPKK----IKVFVLDEADVMIATQGHQDQSIRIQ 231
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
++PR CQ LL SAT V K + ++ +P ++ L ++E ++Q+++ CS
Sbjct: 232 RMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK-----REEETLDTIKQYYVLCSS 286
Query: 267 RDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
RD+ +A+IF +T A L L K G + A+L+ E+ R ++
Sbjct: 287 RDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVI 346
Query: 327 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 386
E F G L+ T+ RGID + V
Sbjct: 347 ERFREGKEKVLVTTN---------------------------------VCARGIDVEQVS 373
Query: 387 TVINFEMPQNAAG------YVHRIGRTGRAYNTGASVSLV-SPDEMKIFEEIK 432
VINF++P + G Y+HRIGRTGR G +V++V S M I I+
Sbjct: 374 VVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQ 426
>pdb|1FUU|A Chain A, Yeast Initiation Factor 4a
pdb|1FUU|B Chain B, Yeast Initiation Factor 4a
Length = 394
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 123/405 (30%), Positives = 197/405 (48%), Gaps = 58/405 (14%)
Query: 33 LDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNES 92
LD L+ + G ++P+ IQQ +I I+EG DV+A+A++G+GKT + + L R+ ++
Sbjct: 28 LDENLLRGVFGYGFEEPSAIQQRAIXPIIEGHDVLAQAQSGTGKTGTFSIAALQRI--DT 85
Query: 93 SPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAG 152
S K AP AL L PTREL Q+ V AL +V + + A LR A
Sbjct: 86 SVK---APQALXLAPTRELALQIQKVVXALAFHXDIKVHACIGGTSFVEDAEGLRDA--- 139
Query: 153 PPDIVIATPGCMPKCLSTGVLQSKSF-SDSLKILVLDEADLLLSYGYEDDLKALSAVIPR 211
IV+ TPG + +Q + F +D +K +LDEAD LS G+++ + + ++P
Sbjct: 140 --QIVVGTPGRVFDN-----IQRRRFRTDKIKXFILDEADEXLSSGFKEQIYQIFTLLPP 192
Query: 212 GCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXX 271
Q +L+SAT +DV ++ NP + + KDE+ + ++QF+++ E +
Sbjct: 193 TTQVVLLSATXPNDVLEVTTKFXRNPVRILVK-----KDELTLEGIKQFYVNVEEEEYKY 247
Query: 272 XXXXXXXXXXVQKKALIFTNTIDMAFRL--KLFLEKFGIKSAILNAELPQNSRLHILEEF 329
+A+IF NT L KL +KF + SAI ++LPQ R I +EF
Sbjct: 248 ECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTV-SAIY-SDLPQQERDTIXKEF 305
Query: 330 NAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVI 389
+G LI+TD + RGID + V VI
Sbjct: 306 RSGSSRILISTD---------------------------------LLARGIDVQQVSLVI 332
Query: 390 NFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 434
N+++P N Y+HRIGR GR G +++ V+ +++ E++ F
Sbjct: 333 NYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAXRELEKF 377
>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An
Atp-analogue And Rna
Length = 424
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 114/413 (27%), Positives = 192/413 (46%), Gaps = 64/413 (15%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEG--KDVVARAKTGSGKTFAYLLPLLHRL 88
L L +L+ + G +P+ IQ+ ++PL+L ++++A++++G+GKT A++L +L ++
Sbjct: 46 LRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQV 105
Query: 89 FNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRA 148
P +K P L L PT EL Q + ++ K +LK L ++ + L
Sbjct: 106 ----EPANKY-PQCLCLSPTYELALQTGK---VIEQMGKFYPELK---LAYAVRGNKLER 154
Query: 149 ALAGPPDIVIATPG-CMPKCLSTGVLQSKSFSDSLKILVLDEADLLL-SYGYEDDLKALS 206
IVI TPG + C + K +K+ VLDEAD+++ + G++D +
Sbjct: 155 GQKISEQIVIGTPGTVLDWCSKLKFIDPKK----IKVFVLDEADVMIATQGHQDQSIRIQ 210
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
++PR CQ LL SAT V K + ++ +P ++ L ++E ++Q+++ CS
Sbjct: 211 RMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK-----REEETLDTIKQYYVLCSS 265
Query: 267 RDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
RD+ +A+IF +T A L L K G + A+L+ E+ R ++
Sbjct: 266 RDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVI 325
Query: 327 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 386
E F G L+ T+ RGID + V
Sbjct: 326 ERFREGKEKVLVTTN---------------------------------VCARGIDVEQVS 352
Query: 387 TVINFEMPQNAAG------YVHRIGRTGRAYNTGASVSLV-SPDEMKIFEEIK 432
VINF++P + G Y+HRIGRTGR G +V++V S M I I+
Sbjct: 353 VVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQ 405
>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
pdb|3FHT|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
Length = 412
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 114/413 (27%), Positives = 192/413 (46%), Gaps = 64/413 (15%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEG--KDVVARAKTGSGKTFAYLLPLLHRL 88
L L +L+ + G +P+ IQ+ ++PL+L ++++A++++G+GKT A++L +L ++
Sbjct: 30 LRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQV 89
Query: 89 FNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRA 148
P +K P L L PT EL Q + ++ K +LK L ++ + L
Sbjct: 90 ----EPANKY-PQCLCLSPTYELALQTGK---VIEQMGKFYPELK---LAYAVRGNKLER 138
Query: 149 ALAGPPDIVIATPG-CMPKCLSTGVLQSKSFSDSLKILVLDEADLLL-SYGYEDDLKALS 206
IVI TPG + C + K +K+ VLDEAD+++ + G++D +
Sbjct: 139 GQKISEQIVIGTPGTVLDWCSKLKFIDPKK----IKVFVLDEADVMIATQGHQDQSIRIQ 194
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
++PR CQ LL SAT V K + ++ +P ++ L ++E ++Q+++ CS
Sbjct: 195 RMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK-----REEETLDTIKQYYVLCSS 249
Query: 267 RDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
RD+ +A+IF +T A L L K G + A+L+ E+ R ++
Sbjct: 250 RDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVI 309
Query: 327 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 386
E F G L+ T+ RGID + V
Sbjct: 310 ERFREGKEKVLVTTN---------------------------------VCARGIDVEQVS 336
Query: 387 TVINFEMPQNAAG------YVHRIGRTGRAYNTGASVSLV-SPDEMKIFEEIK 432
VINF++P + G Y+HRIGRTGR G +V++V S M I I+
Sbjct: 337 VVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQ 389
>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
Length = 417
Score = 132 bits (333), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 114/401 (28%), Positives = 177/401 (44%), Gaps = 63/401 (15%)
Query: 48 KPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLF-------------NESSP 94
+PT +Q+ +IP+I E +D++A A+TGSGKT A+LLP+L +++ N
Sbjct: 37 RPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYG 96
Query: 95 KSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPP 154
+ K P +LVL PTREL Q+Y E + +V+ VV + + +R G
Sbjct: 97 RRKQYPISLVLAPTRELAVQIYEEARKFS--YRSRVRPCVVYGGADI-GQQIRDLERG-C 152
Query: 155 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL---SAVIPR 211
+++ATPG + + G K D K LVLDEAD +L G+E ++ + + P+
Sbjct: 153 HLLVATPGRLVDMMERG----KIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPK 208
Query: 212 GCQ-CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKX 270
G + ++ SAT ++ L + L L + VG + + K V W+ E DK
Sbjct: 209 GVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV---WV--EESDKR 263
Query: 271 XXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 330
L+F T A L+ FL G ++ + Q R L +F
Sbjct: 264 SFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFR 323
Query: 331 AGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN 390
+G L+AT RG+D NV VIN
Sbjct: 324 SGKSPILVATAVA---------------------------------ARGLDISNVKHVIN 350
Query: 391 FEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 431
F++P + YVHRIGRTGR N G + S + + I +++
Sbjct: 351 FDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDL 391
>pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a
pdb|3EIQ|D Chain D, Crystal Structure Of Pdcd4-eif4a
Length = 414
Score = 130 bits (326), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 113/411 (27%), Positives = 196/411 (47%), Gaps = 64/411 (15%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
+ L L+ + G +KP+ IQQ +I ++G DV+A+A++G+GKT + + +L ++
Sbjct: 45 MNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQI-- 102
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
E K A ALVL PTREL QQ+ VMAL + + + +++RA +
Sbjct: 103 ELDLK---ATQALVLAPTRELAQQIQKVVMALGDYMGASCH-------ACIGGTNVRAEV 152
Query: 151 ----AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
P I++ TPG + L+ L K +K+ VLDEAD +LS G++D + +
Sbjct: 153 QKLQMEAPHIIVGTPGRVFDMLNRRYLSPK----YIKMFVLDEADEMLSRGFKDQIYDIF 208
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
+ Q +L+SAT SDV ++ K + +P + + K+E+ + ++QF+I+
Sbjct: 209 QKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVK-----KEELTLEGIRQFYINVER 263
Query: 267 RDKXXXXXXXXXXXXVQKKALIFTNT---IDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+ +A+IF NT +D K+ F + + ++ ++ Q R
Sbjct: 264 EEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTE-KMHARDFTVSA--MHGDMDQKERD 320
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
I+ EF +G LI TD + RGID +
Sbjct: 321 VIMREFRSGSSRVLITTD---------------------------------LLARGIDVQ 347
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 434
V VIN+++P N Y+HRIGR GR G ++++V+ ++ + +I++F
Sbjct: 348 QVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETF 398
>pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|C Chain C, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|D Chain D, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|F Chain F, Crystal Structure Of The Eif4a-Pdcd4 Complex
Length = 388
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 113/411 (27%), Positives = 196/411 (47%), Gaps = 64/411 (15%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
+ L L+ + G +KP+ IQQ +I ++G DV+A+A++G+GKT + + +L ++
Sbjct: 19 MNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQI-- 76
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
E K A ALVL PTREL QQ+ VMAL + + + +++RA +
Sbjct: 77 ELDLK---ATQALVLAPTRELAQQIQKVVMALGDYMGASCH-------ACIGGTNVRAEV 126
Query: 151 ----AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
P I++ TPG + L+ L K +K+ VLDEAD +LS G++D + +
Sbjct: 127 QKLQMEAPHIIVGTPGRVFDMLNRRYLSPK----YIKMFVLDEADEMLSRGFKDQIYDIF 182
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266
+ Q +L+SAT SDV ++ K + +P + + K+E+ + ++QF+I+
Sbjct: 183 QKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVK-----KEELTLEGIRQFYINVER 237
Query: 267 RDKXXXXXXXXXXXXVQKKALIFTNT---IDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323
+ +A+IF NT +D K+ F + + ++ ++ Q R
Sbjct: 238 EEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTE-KMHARDFTVSA--MHGDMDQKERD 294
Query: 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383
I+ EF +G LI TD + RGID +
Sbjct: 295 VIMREFRSGSSRVLITTD---------------------------------LLARGIDVQ 321
Query: 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 434
V VIN+++P N Y+HRIGR GR G ++++V+ ++ + +I++F
Sbjct: 322 QVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETF 372
>pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 1
pdb|2GXS|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXS|B Chain B, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXU|A Chain A, Hera N-Terminal Domain In Complex With Orthophosphate,
Crystal Form 1
Length = 207
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/206 (39%), Positives = 116/206 (56%), Gaps = 12/206 (5%)
Query: 37 LVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKS 96
++ AL+ +G+ PT IQ A++PL LEGKD++ +A+TG+GKT A+ LP+ RL
Sbjct: 12 ILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGR 71
Query: 97 KLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDI 156
K P ALVL PTREL QV SE+ A+ LKVV + + AL D
Sbjct: 72 K--PRALVLTPTRELALQVASELTAVAP------HLKVVAVYGGTGYGKQKEALLRGADA 123
Query: 157 VIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCL 216
V+ATPG L GVL +++ VLDEAD +LS G+E++++AL + P Q L
Sbjct: 124 VVATPGRALDYLRQGVLD----LSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTL 179
Query: 217 LMSATSSSDVDKLKKLILHNPYILTL 242
L SAT S +L + + NP ++ +
Sbjct: 180 LFSATLPSWAKRLAERYMKNPVLINV 205
>pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWJ|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWK|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWK|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWL|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3MWL|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3NBF|A Chain A, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|B Chain B, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|C Chain C, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|D Chain D, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NEJ|A Chain A, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
pdb|3NEJ|B Chain B, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
Length = 207
Score = 123 bits (309), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 80/206 (38%), Positives = 116/206 (56%), Gaps = 12/206 (5%)
Query: 37 LVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKS 96
++ AL+ +G+ PT I+ A++PL LEGKD++ +A+TG+GKT A+ LP+ RL
Sbjct: 12 ILEALHGRGLTTPTPIEAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGR 71
Query: 97 KLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDI 156
K P ALVL PTREL QV SE+ A+ LKVV + + AL D
Sbjct: 72 K--PRALVLTPTRELALQVASELTAVAP------HLKVVAVYGGTGYGKQKEALLRGADA 123
Query: 157 VIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCL 216
V+ATPG L GVL +++ VLDEAD +LS G+E++++AL + P Q L
Sbjct: 124 VVATPGRALDYLRQGVLD----LSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTL 179
Query: 217 LMSATSSSDVDKLKKLILHNPYILTL 242
L SAT S +L + + NP ++ +
Sbjct: 180 LFSATLPSWAKRLAERYMKNPVLINV 205
>pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3
pdb|3RRM|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Nup159, Gle1 H337r, Ip6
And Adp
pdb|3RRN|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Gle1 H337r And Ip6
Length = 395
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 114/420 (27%), Positives = 188/420 (44%), Gaps = 67/420 (15%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEG--KDVVARAKTGSGKTFAYLLPLLHRL 88
LGL L+ + QKP+ IQ+ ++PL+L ++++A++++G+GKT A+ L +L R+
Sbjct: 10 LGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRV 69
Query: 89 FNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRA 148
E + +P A+ L P+REL +Q V + + K QL V P S +
Sbjct: 70 NPEDA-----SPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIV-------PDSFEKN 117
Query: 149 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLL-SYGYEDDLKALSA 207
+++ TPG + + ++Q + +KI VLDEAD +L G D +
Sbjct: 118 KQIN-AQVIVGTPGTVLDLMRRKLMQLQ----KIKIFVLDEADNMLDQQGLGDQCIRVKR 172
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC-SE 266
+P+ Q +L SAT + V + K I+ N L L +EV ++Q ++ C +E
Sbjct: 173 FLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQ-----TNEVNVDAIKQLYMDCKNE 227
Query: 267 RDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
DK + ++IF T A L L+ G + +IL+ +L R ++
Sbjct: 228 ADKFDVLTELYGVMTI-GSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLI 286
Query: 327 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 386
++F G LI T+ + RGID V
Sbjct: 287 DDFREGRSKVLITTN---------------------------------VLARGIDIPTVS 313
Query: 387 TVINFEMPQNAAG------YVHRIGRTGRAYNTGASVSLV-SPDEMKIFEEIKSFVGDDE 439
V+N+++P A G Y+HRIGRTGR G ++S V + I I+ + GD E
Sbjct: 314 MVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIE 373
>pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3
Length = 395
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 114/420 (27%), Positives = 188/420 (44%), Gaps = 67/420 (15%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEG--KDVVARAKTGSGKTFAYLLPLLHRL 88
LGL L+ + QKP+ IQ+ ++PL+L ++++A++++G+GKT A+ L +L R+
Sbjct: 10 LGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRV 69
Query: 89 FNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRA 148
E + +P A+ L P+REL +Q V + + K QL V P S +
Sbjct: 70 NPEDA-----SPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIV-------PDSFEKN 117
Query: 149 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLL-SYGYEDDLKALSA 207
+++ TPG + + ++Q + +KI VLDEAD +L G D +
Sbjct: 118 KQIN-AQVIVGTPGTVLDLMRRKLMQLQ----KIKIFVLDEADNMLDQQGLGDQCIRVKR 172
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC-SE 266
+P+ Q +L SAT + V + K I+ N L L +EV ++Q ++ C +E
Sbjct: 173 FLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQ-----TNEVNVDAIKQLYMDCKNE 227
Query: 267 RDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326
DK + ++IF T A L L+ G + +IL+ +L R ++
Sbjct: 228 ADKFDVLTELYGLMTI-GSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLI 286
Query: 327 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 386
++F G LI T+ + RGID V
Sbjct: 287 DDFREGRSKVLITTN---------------------------------VLARGIDIPTVS 313
Query: 387 TVINFEMPQNAAG------YVHRIGRTGRAYNTGASVSLV-SPDEMKIFEEIKSFVGDDE 439
V+N+++P A G Y+HRIGRTGR G ++S V + I I+ + GD E
Sbjct: 314 MVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIE 373
>pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In
Complex With Amp
Length = 249
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/208 (37%), Positives = 116/208 (55%), Gaps = 14/208 (6%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
LG+ L A ++ G KPT IQ +IPL L+G+D++ A+TGSGKT A+ LP+L+ L
Sbjct: 48 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLE 107
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
+P+ ALVL PTREL Q+ + AL + ++ + + + AL
Sbjct: 108 --TPQRLF---ALVLTPTRELAFQISEQFEAL----GSSIGVQSAVIVGGIDSMSQSLAL 158
Query: 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVI 209
A P I+IATPG + L +K F+ +LK LV+DEAD +L+ +E ++ + VI
Sbjct: 159 AKKPHIIIATPGRLIDHLE----NTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVI 214
Query: 210 PRGCQCLLMSATSSSDVDKLKKLILHNP 237
PR + L SAT + V KL++ L NP
Sbjct: 215 PRDRKTFLFSATMTKKVQKLQRAALKNP 242
>pdb|3FHO|A Chain A, Structure Of S. Pombe Dbp5
pdb|3FHO|B Chain B, Structure Of S. Pombe Dbp5
Length = 508
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 103/392 (26%), Positives = 169/392 (43%), Gaps = 68/392 (17%)
Query: 52 IQQASIPLILEG--KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTR 109
IQ+ ++PL+L ++++ ++++G+GKT A+ L +L R+ + S PK P A+ L P+R
Sbjct: 145 IQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRV-DASVPK----PQAICLAPSR 199
Query: 110 ELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLS 169
EL +Q+ V E+ K + S+P A IVI TPG + +
Sbjct: 200 ELARQIMDVV---TEMGKYTEVKTAFGIKDSVPKGAKIDA-----QIVIGTPGTVMDLMK 251
Query: 170 TGVLQSKSFSDSLKILVLDEADLLL-SYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDK 228
L ++ +K+ VLDEAD +L G D + ++PR Q +L SAT S V+K
Sbjct: 252 RRQLDARD----IKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEK 307
Query: 229 LKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALI 288
+ N + L +E+ + ++Q ++ C + +++I
Sbjct: 308 YAERFAPNANEIRLK-----TEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSII 362
Query: 289 FTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEK 348
F D A + + G A L L R I++ F G L+ T+
Sbjct: 363 FCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTN------- 415
Query: 349 DQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAG------YVH 402
+ RGID V+ V+N++MP + AG Y+H
Sbjct: 416 --------------------------VIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLH 449
Query: 403 RIGRTGRAYNTGASVSLV----SPDEMKIFEE 430
RIGRTGR G S++ V S +EM +E
Sbjct: 450 RIGRTGRFGRVGVSINFVHDKKSWEEMNAIQE 481
>pdb|1VEC|A Chain A, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
pdb|1VEC|B Chain B, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
Length = 206
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/202 (37%), Positives = 110/202 (54%), Gaps = 12/202 (5%)
Query: 37 LVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKS 96
L+ + + G +KP+ IQ+ SIP+ L G+D++ARAK G+GK+ AYL+PLL RL
Sbjct: 14 LLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERL-----DLK 68
Query: 97 KLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDI 156
K A+V+VPTREL QV S++ I++ K KV+ T D L +
Sbjct: 69 KDNIQAMVIVPTRELALQV-SQI--CIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHV 125
Query: 157 VIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCL 216
VIATPG + + GV + D ++++VLDEAD LLS + ++ + +P+ Q L
Sbjct: 126 VIATPGRILDLIKKGVAK----VDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQIL 181
Query: 217 LMSATSSSDVDKLKKLILHNPY 238
L SAT V K L PY
Sbjct: 182 LYSATFPLSVQKFMNSHLEKPY 203
>pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain
Length = 223
Score = 102 bits (253), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 116/206 (56%), Gaps = 16/206 (7%)
Query: 33 LDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNES 92
LD +L+ + G ++P+ IQQ +I I+EG DV+A+A++G+GKT + + L R+ ++
Sbjct: 28 LDEQLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRI--DT 85
Query: 93 SPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAG 152
S K AP AL+L PTREL Q+ VMAL +V + + A LR A
Sbjct: 86 SVK---APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDA--- 139
Query: 153 PPDIVIATPGCMPKCLSTGVLQSKSF-SDSLKILVLDEADLLLSYGYEDDLKALSAVIPR 211
IV+ TPG + +Q + F +D +K+ +LDEAD +LS G+++ + + ++P
Sbjct: 140 --QIVVGTPGRVFDN-----IQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPP 192
Query: 212 GCQCLLMSATSSSDVDKLKKLILHNP 237
Q +L+SAT +DV ++ + NP
Sbjct: 193 TTQVVLLSATMPNDVLEVTTKFMRNP 218
>pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation
Initiation Factor 4a From Saccharomyces Cerevisiae-The
Prototype Of The Dead Box Protein Family
Length = 224
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 115/206 (55%), Gaps = 16/206 (7%)
Query: 33 LDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNES 92
LD L+ + G ++P+ IQQ +I I+EG DV+A+A++G+GKT + + L R+ ++
Sbjct: 21 LDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRI--DT 78
Query: 93 SPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAG 152
S K AP AL+L PTREL Q+ VMAL +V + + A LR A
Sbjct: 79 SVK---APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDA--- 132
Query: 153 PPDIVIATPGCMPKCLSTGVLQSKSF-SDSLKILVLDEADLLLSYGYEDDLKALSAVIPR 211
IV+ TPG + + Q + F +D +K+ +LDEAD +LS G+++ + + ++P
Sbjct: 133 --QIVVGTPGRVFDNI-----QRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPP 185
Query: 212 GCQCLLMSATSSSDVDKLKKLILHNP 237
Q +L+SAT +DV ++ + NP
Sbjct: 186 TTQVVLLSATMPNDVLEVTTKFMRNP 211
>pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human Translation
Initiation Factor 4a-2
Length = 237
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 112/217 (51%), Gaps = 32/217 (14%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRL-- 88
+ L L+ + G +KP+ IQQ +I ++G DV+A+A++G+GKT + + +L +L
Sbjct: 35 MNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEI 94
Query: 89 -FNESSPKSKLAPAALVLVPTRELCQQVYSEVMAL-------IELCKGQVQLKVVQLTSS 140
F E+ ALVL PTREL QQ+ ++AL C G ++
Sbjct: 95 EFKETQ--------ALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVR------- 139
Query: 141 MPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYED 200
++++ A P IV+ TPG + L+ L K +K+ VLDEAD +LS G++D
Sbjct: 140 ---NEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPK----WIKMFVLDEADEMLSRGFKD 192
Query: 201 DLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNP 237
+ + + Q +L+SAT +DV ++ K + +P
Sbjct: 193 QIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDP 229
>pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex
With Adp
Length = 236
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 111/213 (52%), Gaps = 28/213 (13%)
Query: 44 KGIQKP-----TLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKL 98
KG+Q+ T IQ+ +I L L+GKDV+ AKTGSGKT A+L+P+L L+ +
Sbjct: 38 KGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTD- 96
Query: 99 APAALVLVPTRELCQQVYSEVMALI----ELCKGQVQLKVVQLTSSMPASDLR--AALAG 152
L++ PTREL Q + EV+ + + G + + DL+ A
Sbjct: 97 GLGVLIISPTRELAYQTF-EVLRKVGKNHDFSAGLI----------IGGKDLKHEAERIN 145
Query: 153 PPDIVIATPGCMPKCLSTGVLQSKSF-SDSLKILVLDEADLLLSYGYEDDLKALSAVIPR 211
+I++ TPG + + + V SF + L++LVLDEAD +L G+ D + A+ +P+
Sbjct: 146 NINILVCTPGRLLQHMDETV----SFHATDLQMLVLDEADRILDMGFADTMNAVIENLPK 201
Query: 212 GCQCLLMSATSSSDVDKLKKLILHNPYILTLPE 244
Q LL SAT + V L +L L NP + + E
Sbjct: 202 KRQTLLFSATQTKSVKDLARLSLKNPEYVWVHE 234
>pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
pdb|1WRB|B Chain B, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
Length = 253
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 116/230 (50%), Gaps = 16/230 (6%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRL-- 88
L LD + + + Q+PT IQ+ +IP ILE +D++A A+TGSGKT A+L+P+++ L
Sbjct: 28 LKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVC 87
Query: 89 --FNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146
N+ P L+L PTREL Q+ SE + V + S +
Sbjct: 88 QDLNQQRYSKTAYPKCLILAPTRELAIQILSESQ---KFSLNTPLRSCVVYGGADTHSQI 144
Query: 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL- 205
R G +++ATPG L + ++K + K +VLDEAD +L G+E ++ +
Sbjct: 145 REVQMG-CHLLVATPG----RLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKII 199
Query: 206 -SAVIPRGC--QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEV 252
+ +P G Q L+ SAT ++ KL L+N +T+ VG D +
Sbjct: 200 EESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSI 249
>pdb|1Q0U|A Chain A, Crystal Structure Of The Bstdead N-Terminal Domain
pdb|1Q0U|B Chain B, Crystal Structure Of The Bstdead N-Terminal Domain
Length = 219
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 94/201 (46%), Gaps = 9/201 (4%)
Query: 37 LVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKS 96
++ A+ KPT IQ+ IP L G+ V +++TG+GKT AYLLP+ ++ E +
Sbjct: 15 IIEAIKTLRFYKPTEIQERIIPGALRGESXVGQSQTGTGKTHAYLLPIXEKIKPERAEVQ 74
Query: 97 KLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDI 156
A++ PTREL Q+Y E + + + C + L L P I
Sbjct: 75 -----AVITAPTRELATQIYHETLKITKFCPKDRXIVARCLIGGTDKQKALEKLNVQPHI 129
Query: 157 VIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCL 216
VI TPG + + L + ILV+DEADL L G+ D+ ++A P+ Q L
Sbjct: 130 VIGTPGRINDFIREQALDVH----TAHILVVDEADLXLDXGFITDVDQIAARXPKDLQXL 185
Query: 217 LMSATSSSDVDKLKKLILHNP 237
+ SAT + K NP
Sbjct: 186 VFSATIPEKLKPFLKKYXENP 206
>pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56
Length = 390
Score = 92.0 bits (227), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 91/400 (22%), Positives = 172/400 (43%), Gaps = 55/400 (13%)
Query: 37 LVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKS 96
L+ A+ G + P+ +Q IP + G DV+ +AK+G GKT ++L L +L P +
Sbjct: 18 LLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQL----EPVT 73
Query: 97 KLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPA-SDLRAALAGPPD 155
+ LV+ TREL Q+ E K +KV + D P
Sbjct: 74 GQV-SVLVMCHTRELAFQISKEYE---RFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPH 129
Query: 156 IVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLL-SYGYEDDLKALSAVIPRGC 213
IV+ TPG + + ++KS + +K +LDEAD +L D++ + + P
Sbjct: 130 IVVGTPGRI-----LALARNKSLNLKHIKHFILDEADKMLEQLDMRRDVQEIFRMTPHEK 184
Query: 214 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXX 273
Q ++ SAT S ++ + + + +P + + D + ++ +QQ+++ + +K
Sbjct: 185 QVMMFSATLSKEIRPVCRKFMQDPMEIFV----DDETKLTLHGLQQYYVKLKDNEKNRKL 240
Query: 274 XXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGL 333
+ +IF ++ L L + + ++ +PQ RL ++F
Sbjct: 241 FDLLDVLEF-NQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ 299
Query: 334 FDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEM 393
L+AT+ FG RG+D + V+ N++M
Sbjct: 300 RRILVATN-------------------------------LFG--RGMDIERVNIAFNYDM 326
Query: 394 PQNAAGYVHRIGRTGRAYNTGASVSLVS-PDEMKIFEEIK 432
P+++ Y+HR+ R GR G +++ VS ++ KI +++
Sbjct: 327 PEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQ 366
>pdb|3LY5|A Chain A, Ddx18 Dead-Domain
pdb|3LY5|B Chain B, Ddx18 Dead-Domain
Length = 262
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 104/199 (52%), Gaps = 16/199 (8%)
Query: 40 ALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLA 99
A+ + G T IQ SI +LEG+D++A AKTGSGKT A+L+P + + K +
Sbjct: 68 AIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIV-----KLRFM 122
Query: 100 P----AALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPD 155
P L+L PTREL Q + L EL V + + S +++ + L +
Sbjct: 123 PRNGTGVLILSPTRELAMQTFG---VLKELMTHHVHTYGLIMGGSNRSAEAQ-KLGNGIN 178
Query: 156 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQC 215
I++ATPG + + +L+ LV+DEAD +L G+E++LK + ++P Q
Sbjct: 179 IIVATPGRLLDHMQN---TPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQT 235
Query: 216 LLMSATSSSDVDKLKKLIL 234
+L SAT + V+ L ++ L
Sbjct: 236 MLFSATQTRKVEDLARISL 254
>pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56
Length = 391
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 90/400 (22%), Positives = 171/400 (42%), Gaps = 55/400 (13%)
Query: 37 LVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKS 96
L+ A+ G + P+ +Q IP + G DV+ +AK+G GKT ++L L +L P +
Sbjct: 19 LLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQL----EPVT 74
Query: 97 KLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPA-SDLRAALAGPPD 155
+ LV+ TREL Q+ E K +KV + D P
Sbjct: 75 GQV-SVLVMCHTRELAFQISKEYE---RFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPH 130
Query: 156 IVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLL-SYGYEDDLKALSAVIPRGC 213
IV+ TPG + + ++KS + +K +LDE D +L D++ + + P
Sbjct: 131 IVVGTPGRI-----LALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEK 185
Query: 214 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXX 273
Q ++ SAT S ++ + + + +P + + D + ++ +QQ+++ + +K
Sbjct: 186 QVMMFSATLSKEIRPVCRKFMQDPMEIFV----DDETKLTLHGLQQYYVKLKDNEKNRKL 241
Query: 274 XXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGL 333
+ +IF ++ L L + + ++ +PQ RL ++F
Sbjct: 242 FDLLDVLEF-NQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ 300
Query: 334 FDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEM 393
L+AT+ FG RG+D + V+ N++M
Sbjct: 301 RRILVATN-------------------------------LFG--RGMDIERVNIAFNYDM 327
Query: 394 PQNAAGYVHRIGRTGRAYNTGASVSLVS-PDEMKIFEEIK 432
P+++ Y+HR+ R GR G +++ VS ++ KI +++
Sbjct: 328 PEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQ 367
>pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Dead-Box Rna Helicase Ddx5 (P68)
Length = 253
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 102/203 (50%), Gaps = 9/203 (4%)
Query: 37 LVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKS 96
++ + ++ +PT IQ P+ L G D+V A+TGSGKT +YLLP + + ++ +
Sbjct: 54 VMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLER 113
Query: 97 KLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDI 156
P LVL PTREL QQV +V A E C+ +LK + P L +I
Sbjct: 114 GDGPICLVLAPTRELAQQV-QQVAA--EYCRA-CRLKSTCIYGGAPKGPQIRDLERGVEI 169
Query: 157 VIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCL 216
IATPG + L G K+ LVLDEAD +L G+E ++ + I Q L
Sbjct: 170 CIATPGRLIDFLECG----KTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTL 225
Query: 217 LMSATSSSDVDKLKKLILHNPYI 239
+ SAT +V +L + L + YI
Sbjct: 226 MWSATWPKEVRQLAEDFLKD-YI 247
>pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp
Length = 386
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 90/400 (22%), Positives = 171/400 (42%), Gaps = 55/400 (13%)
Query: 37 LVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKS 96
L+ A+ G + P+ +Q IP + G DV+ +AK+G GKT ++L L +L P +
Sbjct: 19 LLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQL----EPVT 74
Query: 97 KLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPA-SDLRAALAGPPD 155
+ LV+ TREL Q+ E K +KV + D P
Sbjct: 75 GQV-SVLVMCHTRELAFQISKEYE---RFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPH 130
Query: 156 IVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLL-SYGYEDDLKALSAVIPRGC 213
IV+ TPG + + ++KS + +K +LDE D +L D++ + + P
Sbjct: 131 IVVGTPGRI-----LALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEK 185
Query: 214 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXX 273
Q ++ SAT S ++ + + + +P + + D + ++ +QQ+++ + +K
Sbjct: 186 QVMMFSATLSKEIRPVCRKFMQDPMEIFV----DDETKLTLHGLQQYYVKLKDNEKNRKL 241
Query: 274 XXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGL 333
+ +IF ++ L L + + ++ +PQ RL ++F
Sbjct: 242 FDLLDVLEF-NQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ 300
Query: 334 FDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEM 393
L+AT+ FG RG+D + V+ N++M
Sbjct: 301 RRILVATN-------------------------------LFG--RGMDIERVNIAFNYDM 327
Query: 394 PQNAAGYVHRIGRTGRAYNTGASVSLVS-PDEMKIFEEIK 432
P+++ Y+HR+ R GR G +++ VS ++ KI +++
Sbjct: 328 PEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQ 367
>pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
pdb|3FE2|B Chain B, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
Length = 242
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 102/203 (50%), Gaps = 9/203 (4%)
Query: 37 LVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKS 96
++ + ++ +PT IQ P+ L G D+V A+TGSGKT +YLLP + + ++ +
Sbjct: 40 VMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLER 99
Query: 97 KLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDI 156
P LVL PTREL QQV +V A E C+ +LK + P L +I
Sbjct: 100 GDGPICLVLAPTRELAQQV-QQVAA--EYCRA-CRLKSTCIYGGAPKGPQIRDLERGVEI 155
Query: 157 VIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCL 216
IATPG + L G K+ LVLDEAD +L G+E ++ + I Q L
Sbjct: 156 CIATPGRLIDFLECG----KTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTL 211
Query: 217 LMSATSSSDVDKLKKLILHNPYI 239
+ SAT +V +L + L + YI
Sbjct: 212 MWSATWPKEVRQLAEDFLKD-YI 233
>pdb|2G9N|A Chain A, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
pdb|2G9N|B Chain B, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
Length = 221
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 103/211 (48%), Gaps = 20/211 (9%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN 90
+ L L+ + G + P+ IQQ +I + G DV+A+A++G+G T + + +L ++
Sbjct: 20 MNLSESLLRGIYAYGFEXPSAIQQRAILPCIXGYDVIAQAQSGTGXTATFAISILQQI-- 77
Query: 91 ESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150
A ALVL PTREL QQ+ VMAL + + + +++RA +
Sbjct: 78 ---ELDLXATQALVLAPTRELAQQIQXVVMALGDYMGASCH-------ACIGGTNVRAEV 127
Query: 151 AG----PPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206
P I++ TPG + L+ L + + VLDEAD +LS G+ D + +
Sbjct: 128 QXLQMEAPHIIVGTPGRVFDMLNRRYLSPX----YIXMFVLDEADEMLSRGFXDQIYDIF 183
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNP 237
+ Q +L+SAT SDV ++ + +P
Sbjct: 184 QXLNSNTQVVLLSATMPSDVLEVTXXFMRDP 214
>pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain
pdb|3IUY|B Chain B, Crystal Structure Of Ddx53 Dead-Box Domain
Length = 228
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 103/205 (50%), Gaps = 10/205 (4%)
Query: 37 LVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLP-LLHRLFNESSPK 95
L+ ++ + GI KPT IQ + P+IL+G D++ A+TG+GKT +YL+P +H S +
Sbjct: 31 LLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISRE 90
Query: 96 SKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPD 155
+ P LVL PTREL V +E KG LK + + + ++ D
Sbjct: 91 QRNGPGMLVLTPTRELALHVEAECSKYSY--KG---LKSICIYGGRNRNGQIEDISKGVD 145
Query: 156 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQC 215
I+IATPG + + +S + LV+DEAD +L +E ++ + + Q
Sbjct: 146 IIIATPGRLNDLQMNNSVNLRSIT----YLVIDEADKMLDMEFEPQIRKILLDVRPDRQT 201
Query: 216 LLMSATSSSDVDKLKKLILHNPYIL 240
++ SAT V +L L +P I+
Sbjct: 202 VMTSATWPDTVRQLALSYLKDPMIV 226
>pdb|3FMO|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 300
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 113/216 (52%), Gaps = 19/216 (8%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEG--KDVVARAKTGSGKTFAYLLPLLHRL 88
L L +L+ + G +P+ IQ+ ++PL+L ++++A++++G+GKT A++L +L ++
Sbjct: 97 LRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQV 156
Query: 89 FNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRA 148
P +K P L L PT EL Q + ++ K +LK L ++ + L
Sbjct: 157 ----EPANKY-PQCLCLSPTYELALQTGK---VIEQMGKFYPELK---LAYAVRGNKLER 205
Query: 149 ALAGPPDIVIATPG-CMPKCLSTGVLQSKSFSDSLKILVLDEADLLL-SYGYEDDLKALS 206
IVI TPG + C + K +K+ VLDEAD+++ + G++D +
Sbjct: 206 GQKISEQIVIGTPGTVLDWCSKLKFIDPKK----IKVFVLDEADVMIATQGHQDQSIRIQ 261
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL 242
++PR CQ LL SAT V K + ++ +P ++ L
Sbjct: 262 RMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKL 297
>pdb|3FHC|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 235
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 113/216 (52%), Gaps = 19/216 (8%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILE--GKDVVARAKTGSGKTFAYLLPLLHRL 88
L L +L+ + G +P+ IQ+ ++PL+L ++++A++++G+GKT A++L +L ++
Sbjct: 30 LRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQV 89
Query: 89 FNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRA 148
P +K P L L PT EL Q + ++ K +LK L ++ + L
Sbjct: 90 ----EPANKY-PQCLCLSPTYELALQTGK---VIEQMGKFYPELK---LAYAVRGNKLER 138
Query: 149 ALAGPPDIVIATPG-CMPKCLSTGVLQSKSFSDSLKILVLDEADLLL-SYGYEDDLKALS 206
IVI TPG + C + K +K+ VLDEAD+++ + G++D +
Sbjct: 139 GQKISEQIVIGTPGTVLDWCSKLKFIDPKK----IKVFVLDEADVMIATQGHQDQSIRIQ 194
Query: 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL 242
++PR CQ LL SAT V K + ++ +P ++ L
Sbjct: 195 RMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKL 230
>pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In
Complex With Adp
Length = 245
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 110/215 (51%), Gaps = 27/215 (12%)
Query: 33 LDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNES 92
++ RL+ + G Q PT IQ +IP++L G++++A A TGSGKT A+ +P+L +L
Sbjct: 36 INSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQL---K 92
Query: 93 SPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAG 152
P +K AL++ PTREL Q++ E++ + E ++ + + + + A G
Sbjct: 93 QPANK-GFRALIISPTRELASQIHRELIKISEGTGFRIHM--------IHKAAVAAKKFG 143
Query: 153 PP-----DIVIATPGCMPKCLSTGVLQSKSFSD--SLKILVLDEADLLLS---YGYEDDL 202
P DI++ TP + L Q D S++ LV+DE+D L G+ D L
Sbjct: 144 PKSSKKFDILVTTPNRLIYLLK----QDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQL 199
Query: 203 KALS-AVIPRGCQCLLMSATSSSDVDKLKKLILHN 236
++ A + + SAT + DV++ KL L N
Sbjct: 200 ASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDN 234
>pdb|2KBE|A Chain A, Solution Structure Of Amino-Terminal Domain Of Dbp5p
Length = 226
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 108/215 (50%), Gaps = 20/215 (9%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEG--KDVVARAKTGSGKTFAYLLPLLHRL 88
LGL L+ + QKP+ IQ+ ++PL+L ++++A++++G+GKT A+ L +L R+
Sbjct: 27 LGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRV 86
Query: 89 FNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRA 148
E + +P A+ L P+REL +Q V + + K QL V S + A
Sbjct: 87 NPEDA-----SPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPD--SFEKNKQINA 139
Query: 149 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLL-SYGYEDDLKALSA 207
+++ TPG + + ++Q + +KI VLDEAD +L G D +
Sbjct: 140 ------QVIVGTPGTVLDLMRRKLMQLQ----KIKIFVLDEADNMLDQQGLGDQCIRVKR 189
Query: 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL 242
+P+ Q +L SAT + V + K I+ N L L
Sbjct: 190 FLPKDTQLVLFSATFADAVRQYAKKIVPNANTLEL 224
>pdb|2HJV|A Chain A, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
pdb|2HJV|B Chain B, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
Length = 163
Score = 70.9 bits (172), Expect = 2e-12, Method: Composition-based stats.
Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 33/150 (22%)
Query: 287 LIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTK 346
+IF T + +L L+ G ++ + Q R ++ EF G + YL+ATD
Sbjct: 39 IIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVA--- 95
Query: 347 EKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGR 406
RGID +N+ VIN+++P YVHR GR
Sbjct: 96 ------------------------------ARGIDIENISLVINYDLPLEKESYVHRTGR 125
Query: 407 TGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
TGRA N G ++S V+ E + +I+ ++G
Sbjct: 126 TGRAGNKGKAISFVTAFEKRFLADIEEYIG 155
>pdb|2WAX|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAX|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
Length = 193
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 95/232 (40%), Gaps = 47/232 (20%)
Query: 236 NPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDM 295
+PY + L E E+ K V Q++ +ER K + +++IF N+
Sbjct: 4 DPYEINLME------ELTLKGVTQYYAYVTERQKVHCLNTLFSRLQI-NQSIIFCNSSQR 56
Query: 296 AFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGG 355
L + + G ++A++ Q R + +F GL L+ TD
Sbjct: 57 VELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTD-------------- 102
Query: 356 HVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGA 415
RGID + V+ VINF+ P+ A Y+HRIGR+GR + G
Sbjct: 103 -------------------LFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGL 143
Query: 416 SVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDV 467
+++L++ D+ + I+ +G + I P P ++ Y +E V
Sbjct: 144 AINLITYDDRFNLKSIEEQLGTE-------IKPIPSNIDKSLYVAEYHSEPV 188
>pdb|2OXC|A Chain A, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|2OXC|B Chain B, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|3B7G|A Chain A, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
pdb|3B7G|B Chain B, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
Length = 230
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 93/186 (50%), Gaps = 14/186 (7%)
Query: 37 LVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKS 96
++ L G ++P+ +Q +IPL G D++ +AK+G+GKT + L L E+
Sbjct: 35 VLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLEN---- 90
Query: 97 KLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDI 156
L+ L+L PTRE+ Q++S + A+ +G L+ P S + L I
Sbjct: 91 -LSTQILILAPTREIAVQIHSVITAIGIKMEG---LECHVFIGGTPLSQDKTRLK-KCHI 145
Query: 157 VIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYG-YEDDLKALSAVIPRGCQC 215
+ +PG + + + L S+++ +LDEAD LL G +++ + + + +P Q
Sbjct: 146 AVGSPGRIKQLIELDYLN----PGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQM 201
Query: 216 LLMSAT 221
L +SAT
Sbjct: 202 LAVSAT 207
>pdb|4DB4|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
Rna-Dna Duplex
pdb|4DB4|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
Rna-Dna Duplex
Length = 256
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432
RG+DF NVH V+ +P A Y+HRIGRT R+ G+SV + DE+ E++
Sbjct: 98 RGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELE 152
>pdb|4DB2|C Chain C, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
pdb|4DB2|D Chain D, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
Length = 257
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432
RG+DF NVH V+ +P A Y+HRIGRT R+ G+SV + DE+ E++
Sbjct: 98 RGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELE 152
>pdb|2YJT|D Chain D, Crystal Structure Of E. Coli Dead-Box Protein Srmb Bound
To Regulator Of Ribonuclease Activity A (Rraa)
Length = 170
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 37/151 (24%), Positives = 63/151 (41%), Gaps = 33/151 (21%)
Query: 285 KALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ 344
++++F + L +L + GI + L E+ Q R ++ G + L+ATD
Sbjct: 32 RSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVA- 90
Query: 345 TKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRI 404
RGID +V V NF+MP++ Y+HRI
Sbjct: 91 --------------------------------ARGIDIPDVSHVFNFDMPRSGDTYLHRI 118
Query: 405 GRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435
GRT RA G ++SLV + + ++ ++
Sbjct: 119 GRTARAGRKGTAISLVEAHDHLLLGKVGRYI 149
>pdb|4DB2|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
pdb|4DB2|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
Length = 257
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432
RG+DF NVH V+ +P A Y+HRIGRT R+ G+SV + DE+ E++
Sbjct: 98 RGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELE 152
>pdb|1T6N|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Uap56
pdb|1T6N|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Uap56
Length = 220
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 92/204 (45%), Gaps = 16/204 (7%)
Query: 37 LVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKS 96
L+ A+ G + P+ +Q IP + G DV+ +AK+G GKT ++L L +L + S
Sbjct: 25 LLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVS 84
Query: 97 KLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPA-SDLRAALAGPPD 155
LV+ TREL Q+ E K +KV + D P
Sbjct: 85 -----VLVMCHTRELAFQISKEYE---RFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPH 136
Query: 156 IVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLL-SYGYEDDLKALSAVIPRGC 213
IV+ TPG + + ++KS + +K +LDE D +L D++ + + P
Sbjct: 137 IVVGTPGRI-----LALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEK 191
Query: 214 QCLLMSATSSSDVDKLKKLILHNP 237
Q ++ SAT S ++ + + + +P
Sbjct: 192 QVMMFSATLSKEIRPVCRKFMQDP 215
>pdb|2RB4|A Chain A, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
pdb|2RB4|B Chain B, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
Length = 175
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 77/197 (39%), Gaps = 43/197 (21%)
Query: 256 NVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNA 315
N++Q+++ C R +A+IF T A L + + + G + ++L+
Sbjct: 7 NIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSG 66
Query: 316 ELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFG 375
EL R I++ F G LI T+
Sbjct: 67 ELTVEQRASIIQRFRDGKEKVLITTN---------------------------------V 93
Query: 376 VVRGIDFKNVHTVINFEMPQ------NAAGYVHRIGRTGRAYNTGASVSLVSPDE----M 425
RGID K V V+NF++P + Y+HRIGRTGR G + +++ DE M
Sbjct: 94 CARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLM 153
Query: 426 KIFEEIKSFVGDDENED 442
KI + S + ED
Sbjct: 154 KIQDHFNSSIKQLNAED 170
>pdb|2JGN|A Chain A, Ddx3 Helicase Domain
pdb|2JGN|B Chain B, Ddx3 Helicase Domain
pdb|2JGN|C Chain C, Ddx3 Helicase Domain
Length = 185
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%)
Query: 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 431
RG+D NV VINF++P + YVHRIGRTGR N G + S + + I +++
Sbjct: 108 RGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDL 161
>pdb|2P6N|A Chain A, Human Dead-box Rna Helicase Ddx41, Helicase Domain
pdb|2P6N|B Chain B, Human Dead-box Rna Helicase Ddx41, Helicase Domain
Length = 191
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 33/115 (28%)
Query: 307 GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHP 366
G+++ ++ Q R +E F G D L+ATD
Sbjct: 78 GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVAS---------------------- 115
Query: 367 KAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS 421
+G+DF + VIN++MP+ YVHRIGRTG + NTG + + ++
Sbjct: 116 -----------KGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFIN 159
>pdb|2KBF|A Chain A, Solution Structure Of Carboxyl-Terminal Domain Of Dbp5p
Length = 187
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 80/198 (40%), Gaps = 42/198 (21%)
Query: 250 DEVIPKNVQQFWISC-SERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGI 308
+EV ++Q ++ C +E DK + ++IF T A L L+ G
Sbjct: 2 NEVNVDAIKQLYMDCKNEADKFDVLTELYGLMTI-GSSIIFVATKKTANVLYGKLKSEGH 60
Query: 309 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA 368
+ +IL+ +L R ++++F G LI T+
Sbjct: 61 EVSILHGDLQTQERDRLIDDFREGRSKVLITTN--------------------------- 93
Query: 369 KLDSEFGVVRGIDFKNVHTVINFEMPQNAAG------YVHRIGRTGRAYNTGASVSLV-S 421
+ RGID V V+N+++P A G Y+HRIGRTGR G ++S V
Sbjct: 94 ------VLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHD 147
Query: 422 PDEMKIFEEIKSFVGDDE 439
+ I I+ + GD E
Sbjct: 148 KNSFNILSAIQKYFGDIE 165
>pdb|3PEU|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
H337r And Ip6
pdb|3PEV|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
And Ip6
Length = 188
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 51/198 (25%), Positives = 80/198 (40%), Gaps = 42/198 (21%)
Query: 250 DEVIPKNVQQFWISC-SERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGI 308
+EV ++Q + C +E DK + ++IF T A L L+ G
Sbjct: 3 NEVNVDAIKQLYXDCKNEADKFDVLTELYGVXTI-GSSIIFVATKKTANVLYGKLKSEGH 61
Query: 309 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA 368
+ +IL+ +L R ++++F G LI T+
Sbjct: 62 EVSILHGDLQTQERDRLIDDFREGRSKVLITTNV-------------------------- 95
Query: 369 KLDSEFGVVRGIDFKNVHTVINFEMPQNAAG------YVHRIGRTGRAYNTGASVSLV-S 421
+ RGID V V+N+++P A G Y+HRIGRTGR G ++S V
Sbjct: 96 -------LARGIDIPTVSXVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHD 148
Query: 422 PDEMKIFEEIKSFVGDDE 439
+ I I+ + GD E
Sbjct: 149 KNSFNILSAIQKYFGDIE 166
>pdb|3GFP|A Chain A, Structure Of The C-Terminal Domain Of The Dead-Box Protein
Dbp5
Length = 189
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 51/198 (25%), Positives = 80/198 (40%), Gaps = 42/198 (21%)
Query: 250 DEVIPKNVQQFWISC-SERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGI 308
+EV ++Q + C +E DK + ++IF T A L L+ G
Sbjct: 4 NEVNVDAIKQLYXDCKNEADKFDVLTELYGLXTI-GSSIIFVATKKTANVLYGKLKSEGH 62
Query: 309 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA 368
+ +IL+ +L R ++++F G LI T+
Sbjct: 63 EVSILHGDLQTQERDRLIDDFREGRSKVLITTNV-------------------------- 96
Query: 369 KLDSEFGVVRGIDFKNVHTVINFEMPQNAAG------YVHRIGRTGRAYNTGASVSLV-S 421
+ RGID V V+N+++P A G Y+HRIGRTGR G ++S V
Sbjct: 97 -------LARGIDIPTVSXVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHD 149
Query: 422 PDEMKIFEEIKSFVGDDE 439
+ I I+ + GD E
Sbjct: 150 KNSFNILSAIQKYFGDIE 167
>pdb|2ZJ2|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 1
pdb|2ZJ5|A Chain A, Archaeal Dna Helicase Hjm Complexed With Adp In Form 1
pdb|2ZJ8|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 2
pdb|2ZJA|A Chain A, Archaeal Dna Helicase Hjm Complexed With Amppcp In Form 2
Length = 720
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 84/192 (43%), Gaps = 20/192 (10%)
Query: 31 LGLDLRLVHALNKKGIQKPTLIQQASIPL-ILEGKDVVARAKTGSGKTFAYLLPLLHRLF 89
L +D R+ L ++GI+ Q ++ ILEGK+ + T SGKT + ++HR+
Sbjct: 6 LRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRIL 65
Query: 90 NESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAA 149
+ A+ +VP + L ++ + E ++ L+V T + D
Sbjct: 66 TQGG-------KAVYIVPLKALAEEKFQEFQDW-----EKIGLRVAMATGDYDSKD---E 110
Query: 150 LAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVI 209
G DI+IAT L G S+ +KILV DE L+ S L+ + A +
Sbjct: 111 WLGKYDIIIATAEKFDSLLRHG----SSWIKDVKILVADEIHLIGSRDRGATLEVILAHM 166
Query: 210 PRGCQCLLMSAT 221
Q + +SAT
Sbjct: 167 LGKAQIIGLSAT 178
>pdb|1FUK|A Chain A, Crystal Structure Of The Carboxy Terminal Domain Of Yeast
Eif4a
Length = 165
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 47/182 (25%), Positives = 81/182 (44%), Gaps = 37/182 (20%)
Query: 255 KNVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRL--KLFLEKFGIKSAI 312
+ ++QF+++ E + +A+IF NT L KL +KF + +
Sbjct: 2 EGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSA-- 59
Query: 313 LNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDS 372
+ ++LPQ R I++EF +G LI+TD
Sbjct: 60 IYSDLPQQERDTIMKEFRSGSSRILISTDL------------------------------ 89
Query: 373 EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432
+ RGID + V VIN+++P N Y+HRIGR GR G +++ V+ +++ E++
Sbjct: 90 ---LARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELE 146
Query: 433 SF 434
F
Sbjct: 147 KF 148
>pdb|1T5I|A Chain A, Crystal Structure Of The C-Terminal Domain Of Uap56
Length = 172
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 374 FGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS-PDEMKIFEEIK 432
FG RG+D + V+ N++MP+++ Y+HR+ R GR G +++ VS ++ KI +++
Sbjct: 91 FG--RGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQ 148
>pdb|3I32|A Chain A, Dimeric Structure Of A Hera Helicase Fragment Including
The C-Terminal Reca Domain, The Dimerization Domain, And
The Rna Binding Domain
Length = 300
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 59/152 (38%), Gaps = 33/152 (21%)
Query: 285 KALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ 344
+A++FT T + L + G + L+ ++ Q R ++ F G L+ATD
Sbjct: 30 RAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVA- 88
Query: 345 TKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRI 404
RG+D V V+++ MP A Y HR
Sbjct: 89 --------------------------------ARGLDIPQVDLVVHYRMPDRAEAYQHRS 116
Query: 405 GRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
GRTGRA G V L P E + E ++ VG
Sbjct: 117 GRTGRAGRGGRVVLLYGPRERRDVEALERAVG 148
>pdb|3EAQ|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
pdb|3EAQ|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
pdb|3EAR|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
pdb|3EAR|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
pdb|3EAS|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
pdb|3EAS|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
Length = 212
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 59/152 (38%), Gaps = 33/152 (21%)
Query: 285 KALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ 344
+A++FT T + L + G + L+ +L Q R +L F G L+ATD
Sbjct: 33 RAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVA- 91
Query: 345 TKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRI 404
RG+D V V+++ +P A Y HR
Sbjct: 92 --------------------------------ARGLDIPQVDLVVHYRLPDRAEAYQHRS 119
Query: 405 GRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436
GRTGRA G V L P E + E ++ VG
Sbjct: 120 GRTGRAGRGGRVVLLYGPRERRDVEALERAVG 151
>pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S
Length = 523
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 74/381 (19%), Positives = 140/381 (36%), Gaps = 73/381 (19%)
Query: 53 QQASIPLILEGKDVVARAKTGSGKTFAYLLP--LLHRLFNESSPKSKLAPAALVLVPTRE 110
Q+ I +L G+D + TG GK+ Y +P LL+ L SP L ++
Sbjct: 30 QEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISL---------MKD 80
Query: 111 LCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLST 170
Q+ + +A L Q + + +++ + +R P +++
Sbjct: 81 QVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLML-----------D 129
Query: 171 GVLQSKSFSDSLKILVLDEADLLLSYGYE--DDLKALSAVIPRGCQCLLMSATSSSD--- 225
L+ + + + +L +DEA + +G++ + AL + R M+ T+++D
Sbjct: 130 NFLEHLAHWNPV-LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 188
Query: 226 -VDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQK 284
D ++ L L++P I ++ + E+ K K
Sbjct: 189 RQDIVRLLGLNDPLI-----------QISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGK 237
Query: 285 KALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ 344
+I+ N+ L+ GI +A +A L N R + E+F ++AT
Sbjct: 238 SGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVAT---- 293
Query: 345 TKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRI 404
FG+ GI+ NV V++F++P+N Y
Sbjct: 294 ---------------------------VAFGM--GINKPNVRFVVHFDIPRNIESYYQET 324
Query: 405 GRTGRAYNTGASVSLVSPDEM 425
GR GR ++ P +M
Sbjct: 325 GRAGRDGLPAEAMLFYDPADM 345
>pdb|4F91|B Chain B, Brr2 Helicase Region
Length = 1724
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 60/129 (46%), Gaps = 14/129 (10%)
Query: 65 DVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIE 124
+V A TGSGKT +L L S + + + P L +QVY M E
Sbjct: 944 NVFVGAPTGSGKTICAEFAILRMLLQSSEGR------CVYITPMEALAEQVY---MDWYE 994
Query: 125 LCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKI 184
+ ++ KVV LT ++DL+ L G +I+I+TP LS Q K+ + + +
Sbjct: 995 KFQDRLNKKVVLLTGET-STDLK--LLGKGNIIISTPEKW-DILSRRWKQRKNVQN-INL 1049
Query: 185 LVLDEADLL 193
V+DE L+
Sbjct: 1050 FVVDEVHLI 1058
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l
pdb|4F93|B Chain B, Brr2 Helicase Region S1087l, Mg-Atp
Length = 1724
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 60/129 (46%), Gaps = 14/129 (10%)
Query: 65 DVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIE 124
+V A TGSGKT +L L S + + + P L +QVY M E
Sbjct: 944 NVFVGAPTGSGKTICAEFAILRMLLQSSEGR------CVYITPMEALAEQVY---MDWYE 994
Query: 125 LCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKI 184
+ ++ KVV LT ++DL+ L G +I+I+TP LS Q K+ + + +
Sbjct: 995 KFQDRLNKKVVLLTGET-STDLK--LLGKGNIIISTPEKW-DILSRRWKQRKNVQN-INL 1049
Query: 185 LVLDEADLL 193
V+DE L+
Sbjct: 1050 FVVDEVHLI 1058
>pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core
Length = 523
Score = 35.4 bits (80), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 74/373 (19%), Positives = 136/373 (36%), Gaps = 73/373 (19%)
Query: 45 GIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLP--LLHRLFNESSPKSKLAPAA 102
G Q+ Q+ I +L G+D + TG GK+ Y +P LL+ L SP L
Sbjct: 22 GYQQFRPGQEEIIDTVLSGRDCLVVXPTGGGKSLCYQIPALLLNGLTVVVSPLISL---- 77
Query: 103 LVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPG 162
++ Q+ + +A L Q + + +++ + +R P + +
Sbjct: 78 -----XKDQVDQLQANGVAAACLNSTQTREQQLEVXTGCRTGQIRLLYIAPERLXL---- 128
Query: 163 CMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE--DDLKALSAVIPRGCQCLLMSA 220
L+ + + + +L +DEA + +G++ + AL + R +
Sbjct: 129 -------DNFLEHLAHWNPV-LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFXAL 180
Query: 221 TSSSD----VDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXX 276
T+++D D ++ L L++P I ++ + E+ K
Sbjct: 181 TATADDTTRQDIVRLLGLNDPLI-----------QISSFDRPNIRYXLXEKFKPLDQLXR 229
Query: 277 XXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDY 336
K +I+ N+ L+ GI +A +A L N R + E+F
Sbjct: 230 YVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQI 289
Query: 337 LIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQN 396
++AT FG GI+ NV V++F++P+N
Sbjct: 290 VVAT-------------------------------VAFGX--GINKPNVRFVVHFDIPRN 316
Query: 397 AAGYVHRIGRTGR 409
Y GR GR
Sbjct: 317 IESYYQETGRAGR 329
>pdb|4A2W|A Chain A, Structure Of Full-Length Duck Rig-I
pdb|4A2W|B Chain B, Structure Of Full-Length Duck Rig-I
Length = 936
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 50/131 (38%), Gaps = 12/131 (9%)
Query: 61 LEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVM 120
+ GK+ + A TGSGKTF +L H N + + VP E + V+
Sbjct: 261 INGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHF 320
Query: 121 ALIELCKGQVQLKVVQLTSSMPASDLRAA-LAGPPDIVIATPGCMPKCLSTGVLQSKSFS 179
+ Q VQ S S++ + DI++ TP + G L S S
Sbjct: 321 --------ERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSI- 371
Query: 180 DSLKILVLDEA 190
+++ DE
Sbjct: 372 --FTLMIFDEC 380
>pdb|4AY2|A Chain A, Capturing 5' Tri-Phosphorylated Rna Duplex By Rig-I
Length = 687
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 14/132 (10%)
Query: 61 LEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVL--VPTRELCQQVYSE 118
++GK+ + A TG GKTF LL H L + P+ + +P E + V+S+
Sbjct: 17 MKGKNTIICAPTGCGKTFVSLLICEHHL--KKFPQGQKGKVVFFANQIPVYEQNKSVFSK 74
Query: 119 VMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSF 178
+ +V ++ + + + DI+I TP + L G + S S
Sbjct: 75 YFE-------RHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSI 127
Query: 179 SDSLKILVLDEA 190
+++ DE
Sbjct: 128 ---FTLMIFDEC 136
>pdb|4A2P|A Chain A, Structure Of Duck Rig-I Helicase Domain
pdb|4A36|A Chain A, Structure Of Duck Rig-I Helicase Domain Bound To 19-Mer
Dsrna And Atp Transition State Analogue
pdb|4A36|B Chain B, Structure Of Duck Rig-I Helicase Domain Bound To 19-Mer
Dsrna And Atp Transition State Analogue
Length = 556
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 50/131 (38%), Gaps = 12/131 (9%)
Query: 61 LEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVM 120
+ GK+ + A TGSGKTF +L H N + + VP E + V+
Sbjct: 20 INGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHF 79
Query: 121 ALIELCKGQVQLKVVQLTSSMPASDLRAA-LAGPPDIVIATPGCMPKCLSTGVLQSKSFS 179
+ Q VQ S S++ + DI++ TP + G L S S
Sbjct: 80 --------ERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSI- 130
Query: 180 DSLKILVLDEA 190
+++ DE
Sbjct: 131 --FTLMIFDEC 139
>pdb|2YKG|A Chain A, Structural Insights Into Rna Recognition By Rig-I
Length = 696
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 14/132 (10%)
Query: 61 LEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVL--VPTRELCQQVYSE 118
++GK+ + A TG GKTF LL H L + P+ + +P E + V+S+
Sbjct: 26 MKGKNTIICAPTGCGKTFVSLLICEHHL--KKFPQGQKGKVVFFANQIPVYEQNKSVFSK 83
Query: 119 VMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSF 178
+ +V ++ + + + DI+I TP + L G + S S
Sbjct: 84 YFE-------RHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSI 136
Query: 179 SDSLKILVLDEA 190
+++ DE
Sbjct: 137 ---FTLMIFDEC 145
>pdb|3TMI|A Chain A, Structural Basis For Rna Recognition And Activation Of
Rig-I
Length = 695
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 14/132 (10%)
Query: 61 LEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVL--VPTRELCQQVYSE 118
++GK+ + A TG GKTF LL H L + P+ + +P E + V+S+
Sbjct: 25 MKGKNTIICAPTGCGKTFVSLLICEHHL--KKFPQGQKGKVVFFANQIPVYEQQKSVFSK 82
Query: 119 VMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSF 178
+ +V ++ + + + DI+I TP + L G + S S
Sbjct: 83 YFE-------RHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSI 135
Query: 179 SDSLKILVLDEA 190
+++ DE
Sbjct: 136 ---FTLMIFDEC 144
>pdb|4A2Q|A Chain A, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|B Chain B, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|D Chain D, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|E Chain E, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
Length = 797
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 50/131 (38%), Gaps = 12/131 (9%)
Query: 61 LEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVM 120
+ GK+ + A TGSGKTF +L H N + + VP E + V+
Sbjct: 261 INGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHF 320
Query: 121 ALIELCKGQVQLKVVQLTSSMPASDLRAA-LAGPPDIVIATPGCMPKCLSTGVLQSKSFS 179
+ Q VQ S S++ + DI++ TP + G L S S
Sbjct: 321 --------ERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSI- 371
Query: 180 DSLKILVLDEA 190
+++ DE
Sbjct: 372 --FTLMIFDEC 380
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,578,453
Number of Sequences: 62578
Number of extensions: 594465
Number of successful extensions: 1489
Number of sequences better than 100.0: 77
Number of HSP's better than 100.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1247
Number of HSP's gapped (non-prelim): 118
length of query: 605
length of database: 14,973,337
effective HSP length: 104
effective length of query: 501
effective length of database: 8,465,225
effective search space: 4241077725
effective search space used: 4241077725
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)