Query 007402
Match_columns 605
No_of_seqs 418 out of 2942
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 23:06:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007402.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007402hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0346 RNA helicase [RNA proc 100.0 6E-136 1E-140 1027.4 40.3 535 23-578 16-559 (569)
2 KOG0330 ATP-dependent RNA heli 100.0 1.9E-77 4.1E-82 596.5 32.9 390 21-469 56-445 (476)
3 KOG0338 ATP-dependent RNA heli 100.0 3.5E-76 7.6E-81 603.1 34.0 430 25-517 180-612 (691)
4 KOG0331 ATP-dependent RNA heli 100.0 6.6E-72 1.4E-76 591.8 33.9 370 25-438 90-463 (519)
5 COG0513 SrmB Superfamily II DN 100.0 4.6E-70 1E-74 599.7 42.8 365 26-437 29-395 (513)
6 KOG0342 ATP-dependent RNA heli 100.0 4.2E-69 9.1E-74 551.6 35.7 426 24-510 80-513 (543)
7 KOG0340 ATP-dependent RNA heli 100.0 1.4E-69 3.1E-74 534.3 30.1 375 24-450 5-381 (442)
8 KOG0343 RNA Helicase [RNA proc 100.0 3.4E-67 7.3E-72 541.3 35.2 356 24-425 67-424 (758)
9 KOG0333 U5 snRNP-like RNA heli 100.0 2.7E-67 5.9E-72 539.9 33.0 369 21-436 240-637 (673)
10 KOG0328 Predicted ATP-dependen 100.0 2.5E-67 5.4E-72 503.7 26.3 367 18-436 19-386 (400)
11 KOG0326 ATP-dependent RNA heli 100.0 5.5E-68 1.2E-72 515.8 18.1 366 25-450 84-449 (459)
12 PRK04837 ATP-dependent RNA hel 100.0 6E-65 1.3E-69 551.2 42.2 362 24-432 6-371 (423)
13 KOG0345 ATP-dependent RNA heli 100.0 2.7E-65 5.9E-70 520.0 35.6 362 25-428 3-369 (567)
14 PTZ00110 helicase; Provisional 100.0 4.1E-64 9E-69 557.4 43.1 374 21-439 125-500 (545)
15 KOG0348 ATP-dependent RNA heli 100.0 4.2E-65 9.1E-70 524.4 32.3 375 24-437 134-568 (708)
16 PRK10590 ATP-dependent RNA hel 100.0 2.1E-63 4.5E-68 543.2 42.5 363 26-435 1-364 (456)
17 PRK11634 ATP-dependent RNA hel 100.0 1.2E-62 2.6E-67 550.7 48.1 362 23-435 3-364 (629)
18 PRK11776 ATP-dependent RNA hel 100.0 6.5E-63 1.4E-67 540.9 43.6 359 25-435 3-361 (460)
19 PRK04537 ATP-dependent RNA hel 100.0 7.6E-63 1.7E-67 549.1 41.7 364 26-435 9-376 (572)
20 PLN00206 DEAD-box ATP-dependen 100.0 3.8E-62 8.3E-67 539.9 41.2 371 21-438 116-490 (518)
21 PRK11192 ATP-dependent RNA hel 100.0 2.5E-61 5.5E-66 524.9 44.8 361 26-434 1-363 (434)
22 KOG0347 RNA helicase [RNA proc 100.0 2.1E-63 4.5E-68 513.3 23.0 390 25-465 180-606 (731)
23 KOG0336 ATP-dependent RNA heli 100.0 3.5E-62 7.6E-67 488.2 26.0 375 21-441 214-590 (629)
24 PRK01297 ATP-dependent RNA hel 100.0 8.7E-60 1.9E-64 517.8 43.7 368 22-436 83-455 (475)
25 KOG0335 ATP-dependent RNA heli 100.0 1.9E-61 4.1E-66 503.7 28.0 375 21-441 69-462 (482)
26 KOG0339 ATP-dependent RNA heli 100.0 7.4E-60 1.6E-64 482.4 29.0 371 21-437 218-589 (731)
27 PTZ00424 helicase 45; Provisio 100.0 1.1E-57 2.4E-62 491.6 43.6 364 21-436 23-387 (401)
28 KOG0341 DEAD-box protein abstr 100.0 2.7E-60 5.9E-65 471.8 14.6 378 17-438 161-544 (610)
29 KOG0332 ATP-dependent RNA heli 100.0 1.2E-57 2.6E-62 452.3 25.3 376 25-460 89-474 (477)
30 KOG0327 Translation initiation 100.0 2.2E-57 4.8E-62 454.6 25.9 362 19-434 19-381 (397)
31 KOG0334 RNA helicase [RNA proc 100.0 3.1E-57 6.7E-62 501.4 28.9 372 21-435 360-732 (997)
32 KOG0337 ATP-dependent RNA heli 100.0 8.7E-58 1.9E-62 459.3 20.7 363 25-437 20-382 (529)
33 KOG0350 DEAD-box ATP-dependent 100.0 1.3E-55 2.8E-60 451.8 27.3 364 26-435 127-552 (620)
34 TIGR03817 DECH_helic helicase/ 100.0 1.1E-52 2.4E-57 478.9 37.7 354 26-435 12-400 (742)
35 KOG0344 ATP-dependent RNA heli 100.0 1.4E-53 3.1E-58 447.0 22.7 373 22-437 128-509 (593)
36 KOG4284 DEAD box protein [Tran 100.0 1.1E-52 2.4E-57 439.7 23.4 352 22-425 21-381 (980)
37 PLN03137 ATP-dependent DNA hel 100.0 3.5E-49 7.6E-54 447.8 38.6 339 25-426 434-790 (1195)
38 TIGR00614 recQ_fam ATP-depende 100.0 1E-48 2.2E-53 428.9 36.2 321 43-428 6-338 (470)
39 KOG0329 ATP-dependent RNA heli 100.0 1.6E-49 3.5E-54 376.0 14.4 335 25-450 41-376 (387)
40 PRK11057 ATP-dependent DNA hel 100.0 8.6E-47 1.9E-51 424.4 37.9 329 31-427 7-347 (607)
41 PRK13767 ATP-dependent helicas 100.0 1.2E-45 2.6E-50 429.0 37.5 345 33-422 18-397 (876)
42 TIGR01389 recQ ATP-dependent D 100.0 3E-45 6.5E-50 412.6 35.9 321 39-427 3-335 (591)
43 TIGR02621 cas3_GSU0051 CRISPR- 100.0 8.7E-45 1.9E-49 407.1 35.1 322 44-422 12-390 (844)
44 PRK02362 ski2-like helicase; P 100.0 9.7E-45 2.1E-49 417.3 32.7 338 26-423 1-397 (737)
45 TIGR00580 mfd transcription-re 100.0 1.9E-43 4.1E-48 406.9 38.1 323 31-423 434-770 (926)
46 PRK00254 ski2-like helicase; P 100.0 1.4E-43 3E-48 406.8 33.7 337 26-424 1-389 (720)
47 PRK10689 transcription-repair 100.0 3.2E-42 6.9E-47 404.6 37.3 321 32-422 584-918 (1147)
48 COG1201 Lhr Lhr-like helicases 100.0 5.1E-41 1.1E-45 374.8 34.4 337 33-422 8-361 (814)
49 PRK09401 reverse gyrase; Revie 100.0 1E-40 2.2E-45 392.8 37.7 283 44-395 77-410 (1176)
50 PRK10917 ATP-dependent DNA hel 100.0 5.1E-40 1.1E-44 373.4 39.0 317 35-421 248-587 (681)
51 KOG0349 Putative DEAD-box RNA 100.0 5.8E-42 1.3E-46 345.1 20.2 356 26-424 2-616 (725)
52 PRK01172 ski2-like helicase; P 100.0 9.1E-41 2E-45 381.7 32.9 331 26-423 1-378 (674)
53 PRK09751 putative ATP-dependen 100.0 2.6E-40 5.6E-45 390.2 35.7 312 68-424 1-384 (1490)
54 TIGR00643 recG ATP-dependent D 100.0 1E-39 2.2E-44 368.6 37.4 318 35-421 223-564 (630)
55 COG0514 RecQ Superfamily II DN 100.0 1.6E-40 3.4E-45 358.9 29.2 321 39-426 7-340 (590)
56 PRK12898 secA preprotein trans 100.0 2E-39 4.3E-44 356.9 38.2 323 44-425 100-588 (656)
57 PHA02653 RNA helicase NPH-II; 100.0 1.1E-39 2.4E-44 364.2 32.5 316 50-426 166-517 (675)
58 PRK14701 reverse gyrase; Provi 100.0 2.1E-39 4.5E-44 388.9 34.5 329 36-426 67-459 (1638)
59 TIGR01054 rgy reverse gyrase. 100.0 1.4E-38 3E-43 375.2 38.2 294 36-395 66-409 (1171)
60 PRK09200 preprotein translocas 100.0 6.7E-38 1.5E-42 351.7 39.8 324 44-425 75-543 (790)
61 TIGR01970 DEAH_box_HrpB ATP-de 100.0 2.5E-37 5.5E-42 352.9 34.4 303 54-425 8-338 (819)
62 TIGR03714 secA2 accessory Sec 100.0 3.5E-36 7.6E-41 334.8 38.0 324 44-425 67-539 (762)
63 TIGR01587 cas3_core CRISPR-ass 100.0 2E-37 4.4E-42 329.0 25.8 301 65-421 1-334 (358)
64 PRK11664 ATP-dependent RNA hel 100.0 4.5E-37 9.7E-42 351.7 30.4 303 54-425 11-341 (812)
65 TIGR00963 secA preprotein tran 100.0 8.3E-36 1.8E-40 329.8 37.1 323 44-425 53-519 (745)
66 PHA02558 uvsW UvsW helicase; P 100.0 8.1E-37 1.8E-41 336.8 29.1 312 46-420 112-449 (501)
67 COG1111 MPH1 ERCC4-like helica 100.0 1.1E-34 2.4E-39 300.7 34.0 328 45-424 12-482 (542)
68 COG1205 Distinct helicase fami 100.0 4.4E-35 9.6E-40 335.7 32.3 340 33-421 55-420 (851)
69 TIGR03158 cas3_cyano CRISPR-as 100.0 1E-34 2.3E-39 306.8 32.3 303 52-408 1-357 (357)
70 KOG0351 ATP-dependent DNA heli 100.0 2.4E-35 5.2E-40 335.7 24.9 327 39-428 255-597 (941)
71 KOG0352 ATP-dependent DNA heli 100.0 1.9E-35 4E-40 298.1 19.2 333 35-427 5-366 (641)
72 PRK13766 Hef nuclease; Provisi 100.0 2E-33 4.2E-38 326.8 38.5 329 45-424 12-480 (773)
73 COG1202 Superfamily II helicas 100.0 2.1E-34 4.4E-39 299.9 22.3 345 24-425 192-555 (830)
74 COG1204 Superfamily II helicas 100.0 7.8E-33 1.7E-37 313.2 29.7 335 31-422 14-407 (766)
75 KOG0354 DEAD-box like helicase 100.0 4.9E-32 1.1E-36 296.1 27.3 357 31-438 45-544 (746)
76 PRK05580 primosome assembly pr 100.0 1.5E-30 3.3E-35 295.0 37.6 309 48-424 144-550 (679)
77 PRK11131 ATP-dependent RNA hel 100.0 2.2E-31 4.7E-36 309.8 28.7 299 54-425 80-413 (1294)
78 cd00268 DEADc DEAD-box helicas 100.0 1.3E-30 2.7E-35 254.5 24.6 202 28-240 1-202 (203)
79 PRK13104 secA preprotein trans 100.0 1.5E-29 3.2E-34 283.7 36.1 323 44-425 79-589 (896)
80 PRK12899 secA preprotein trans 100.0 2.4E-29 5.1E-34 281.5 36.7 153 28-194 64-228 (970)
81 TIGR00603 rad25 DNA repair hel 100.0 1.1E-30 2.4E-35 291.0 26.0 315 47-425 254-609 (732)
82 PRK04914 ATP-dependent helicas 100.0 3.5E-29 7.6E-34 287.9 37.7 336 48-436 152-616 (956)
83 KOG0353 ATP-dependent DNA heli 100.0 9E-30 2E-34 253.4 24.9 342 26-425 71-469 (695)
84 KOG0952 DNA/RNA helicase MER3/ 100.0 6.8E-30 1.5E-34 281.8 26.4 344 42-432 104-500 (1230)
85 PRK12904 preprotein translocas 100.0 2.8E-28 6.1E-33 273.4 38.3 323 44-425 78-575 (830)
86 PRK12906 secA preprotein trans 100.0 1.2E-28 2.7E-33 275.2 34.5 323 44-425 77-555 (796)
87 PRK09694 helicase Cas3; Provis 100.0 7.4E-28 1.6E-32 275.4 33.3 319 46-412 284-664 (878)
88 TIGR01967 DEAH_box_HrpA ATP-de 100.0 2.3E-28 5E-33 285.7 27.6 314 43-425 59-406 (1283)
89 TIGR00595 priA primosomal prot 100.0 2E-27 4.4E-32 260.6 30.7 291 67-424 1-383 (505)
90 COG1061 SSL2 DNA or RNA helica 100.0 2.2E-27 4.9E-32 257.1 25.7 304 47-416 35-383 (442)
91 COG1200 RecG RecG-like helicas 100.0 2.8E-26 6E-31 247.9 33.3 327 29-425 243-593 (677)
92 PRK13107 preprotein translocas 100.0 3.8E-26 8.2E-31 255.7 33.5 323 44-425 79-593 (908)
93 COG1197 Mfd Transcription-repa 99.9 6.3E-25 1.4E-29 249.3 33.7 339 31-440 577-929 (1139)
94 KOG0947 Cytoplasmic exosomal R 99.9 1.2E-25 2.7E-30 245.7 25.9 317 43-422 293-722 (1248)
95 KOG0951 RNA helicase BRR2, DEA 99.9 1.1E-25 2.5E-30 251.1 24.0 346 32-428 295-707 (1674)
96 PF00270 DEAD: DEAD/DEAH box h 99.9 7.7E-26 1.7E-30 213.6 17.6 166 50-229 1-169 (169)
97 PRK12900 secA preprotein trans 99.9 2.4E-23 5.3E-28 234.0 32.0 129 262-425 576-713 (1025)
98 PRK11448 hsdR type I restricti 99.9 9.6E-24 2.1E-28 248.1 29.3 317 47-412 412-802 (1123)
99 KOG0948 Nuclear exosomal RNA h 99.9 7.6E-25 1.7E-29 234.3 14.6 306 49-422 130-538 (1041)
100 COG4098 comFA Superfamily II D 99.9 1.8E-22 3.8E-27 200.2 29.7 302 48-424 97-417 (441)
101 COG4581 Superfamily II RNA hel 99.9 2.4E-23 5.2E-28 236.5 25.7 317 41-422 113-536 (1041)
102 COG1110 Reverse gyrase [DNA re 99.9 7.6E-22 1.7E-26 218.7 31.2 284 45-394 80-416 (1187)
103 PLN03142 Probable chromatin-re 99.9 2E-21 4.3E-26 224.8 28.6 319 48-423 169-599 (1033)
104 PRK12326 preprotein translocas 99.9 4.7E-20 1E-24 202.5 35.3 323 44-425 75-549 (764)
105 KOG0950 DNA polymerase theta/e 99.9 6.6E-22 1.4E-26 218.4 18.6 337 33-427 207-615 (1008)
106 COG1203 CRISPR-associated heli 99.9 1.4E-21 3.1E-26 223.9 22.2 332 48-425 195-552 (733)
107 TIGR00631 uvrb excinuclease AB 99.9 4.8E-20 1E-24 207.3 33.6 133 268-434 426-564 (655)
108 PRK13103 secA preprotein trans 99.9 2.7E-19 5.8E-24 201.1 31.9 322 44-425 79-593 (913)
109 TIGR01407 dinG_rel DnaQ family 99.9 2.9E-19 6.3E-24 208.9 32.7 97 33-140 231-332 (850)
110 COG1198 PriA Primosomal protei 99.9 3.6E-19 7.9E-24 198.7 30.8 313 47-424 197-604 (730)
111 PRK05298 excinuclease ABC subu 99.8 1.8E-18 3.9E-23 195.9 33.0 123 269-425 431-559 (652)
112 PRK12903 secA preprotein trans 99.8 3.1E-18 6.7E-23 190.7 33.2 322 44-425 75-541 (925)
113 COG1643 HrpA HrpA-like helicas 99.8 4E-19 8.7E-24 201.1 26.2 309 50-425 52-389 (845)
114 smart00487 DEXDc DEAD-like hel 99.8 6.5E-19 1.4E-23 169.1 21.1 189 43-244 3-192 (201)
115 KOG0920 ATP-dependent RNA heli 99.8 5.4E-19 1.2E-23 199.3 21.7 319 49-425 174-546 (924)
116 CHL00122 secA preprotein trans 99.8 1.9E-17 4.2E-22 185.5 33.1 274 44-344 73-485 (870)
117 TIGR00348 hsdR type I site-spe 99.8 5.5E-18 1.2E-22 192.6 26.4 305 49-410 239-634 (667)
118 PRK12902 secA preprotein trans 99.8 1.3E-16 2.7E-21 178.6 35.5 132 44-194 82-218 (939)
119 KOG0922 DEAH-box RNA helicase 99.8 1.9E-17 4.1E-22 178.0 24.2 304 52-425 55-392 (674)
120 COG4096 HsdR Type I site-speci 99.8 2.6E-18 5.7E-23 188.5 18.0 305 46-410 163-525 (875)
121 KOG0923 mRNA splicing factor A 99.8 6.2E-17 1.3E-21 172.3 22.3 305 49-422 266-605 (902)
122 COG0556 UvrB Helicase subunit 99.7 4.4E-16 9.5E-21 163.0 25.6 116 275-424 438-558 (663)
123 KOG0385 Chromatin remodeling c 99.7 4.9E-16 1.1E-20 168.1 26.0 315 47-423 166-599 (971)
124 PRK07246 bifunctional ATP-depe 99.7 9.7E-16 2.1E-20 177.3 28.9 74 43-126 241-319 (820)
125 cd00079 HELICc Helicase superf 99.7 9.8E-17 2.1E-21 144.3 14.6 129 257-419 2-131 (131)
126 KOG0387 Transcription-coupled 99.7 5.2E-15 1.1E-19 161.0 28.0 322 47-422 204-657 (923)
127 KOG4150 Predicted ATP-dependen 99.7 1.1E-16 2.3E-21 167.5 13.8 336 40-422 278-639 (1034)
128 PRK12901 secA preprotein trans 99.7 6.8E-15 1.5E-19 166.3 28.1 129 262-425 606-743 (1112)
129 KOG1123 RNA polymerase II tran 99.7 6.2E-17 1.3E-21 167.4 9.8 314 47-423 301-653 (776)
130 PF00271 Helicase_C: Helicase 99.7 1.4E-16 3E-21 130.7 8.2 78 301-411 1-78 (78)
131 KOG0949 Predicted helicase, DE 99.7 3.2E-15 7E-20 165.0 20.7 167 45-226 509-675 (1330)
132 KOG0953 Mitochondrial RNA heli 99.7 8.7E-16 1.9E-20 161.2 15.3 306 62-466 190-513 (700)
133 KOG0926 DEAH-box RNA helicase 99.7 4.4E-15 9.4E-20 161.0 20.1 314 46-423 242-704 (1172)
134 cd00046 DEXDc DEAD-like helica 99.6 6.3E-15 1.4E-19 133.0 17.0 144 64-222 1-144 (144)
135 TIGR03117 cas_csf4 CRISPR-asso 99.6 2.5E-13 5.4E-18 151.1 31.6 62 59-126 12-74 (636)
136 KOG0924 mRNA splicing factor A 99.6 2.7E-14 5.8E-19 152.6 22.2 308 46-423 354-697 (1042)
137 PRK08074 bifunctional ATP-depe 99.6 2.9E-13 6.2E-18 159.5 29.1 108 282-422 751-892 (928)
138 COG4889 Predicted helicase [Ge 99.6 5.3E-15 1.1E-19 161.3 11.8 340 23-419 137-584 (1518)
139 KOG0384 Chromodomain-helicase 99.6 6.5E-14 1.4E-18 158.5 19.7 322 47-423 369-811 (1373)
140 KOG0390 DNA repair protein, SN 99.6 1.1E-12 2.4E-17 146.3 29.4 326 47-422 237-706 (776)
141 KOG0925 mRNA splicing factor A 99.6 7.8E-13 1.7E-17 137.1 25.6 340 9-423 8-387 (699)
142 PF04851 ResIII: Type III rest 99.6 1.1E-14 2.4E-19 138.9 10.2 157 48-223 3-183 (184)
143 KOG0392 SNF2 family DNA-depend 99.6 2.1E-13 4.6E-18 153.8 21.6 320 50-417 977-1446(1549)
144 KOG0389 SNF2 family DNA-depend 99.5 6.7E-13 1.4E-17 144.6 21.2 323 49-423 400-888 (941)
145 PRK14873 primosome assembly pr 99.5 6.1E-12 1.3E-16 141.8 28.2 134 68-227 165-308 (665)
146 PF06862 DUF1253: Protein of u 99.5 5.1E-12 1.1E-16 134.3 25.3 243 152-426 130-418 (442)
147 KOG1000 Chromatin remodeling p 99.5 3.5E-12 7.6E-17 132.6 22.4 348 26-438 182-620 (689)
148 PRK11747 dinG ATP-dependent DN 99.5 5.2E-11 1.1E-15 136.4 32.5 65 45-117 23-96 (697)
149 smart00490 HELICc helicase sup 99.5 1.6E-13 3.4E-18 112.6 8.7 81 298-411 2-82 (82)
150 TIGR02562 cas3_yersinia CRISPR 99.4 5E-12 1.1E-16 144.1 18.2 329 38-412 398-881 (1110)
151 COG0653 SecA Preprotein transl 99.4 3.1E-11 6.7E-16 135.4 22.4 323 44-425 77-547 (822)
152 COG1199 DinG Rad3-related DNA 99.4 1.3E-10 2.8E-15 133.4 26.6 72 43-121 10-85 (654)
153 KOG0951 RNA helicase BRR2, DEA 99.4 2.5E-11 5.5E-16 137.7 19.3 308 49-425 1144-1496(1674)
154 TIGR00604 rad3 DNA repair heli 99.3 1.7E-09 3.8E-14 124.6 30.4 75 44-123 6-84 (705)
155 KOG4439 RNA polymerase II tran 99.2 3.4E-10 7.4E-15 122.3 18.8 104 282-417 745-850 (901)
156 KOG2340 Uncharacterized conser 99.2 4.9E-10 1.1E-14 117.7 18.0 348 46-426 214-671 (698)
157 PF02399 Herpes_ori_bp: Origin 99.1 2.5E-09 5.5E-14 119.6 20.8 288 65-422 51-387 (824)
158 KOG0386 Chromatin remodeling c 99.1 1.5E-09 3.3E-14 121.5 18.1 321 48-422 394-835 (1157)
159 KOG1002 Nucleotide excision re 99.1 7.6E-09 1.6E-13 108.0 18.6 107 285-423 640-749 (791)
160 PF07517 SecA_DEAD: SecA DEAD- 99.0 6.4E-09 1.4E-13 104.5 15.7 134 44-194 74-210 (266)
161 smart00488 DEXDc2 DEAD-like he 99.0 5E-09 1.1E-13 107.7 12.8 76 44-122 5-84 (289)
162 smart00489 DEXDc3 DEAD-like he 99.0 5E-09 1.1E-13 107.7 12.8 76 44-122 5-84 (289)
163 KOG0388 SNF2 family DNA-depend 99.0 1.1E-07 2.4E-12 103.0 22.9 104 279-415 1040-1144(1185)
164 COG0553 HepA Superfamily II DN 99.0 3.1E-08 6.8E-13 117.4 21.0 123 268-422 692-821 (866)
165 PF07652 Flavi_DEAD: Flaviviru 99.0 1.1E-09 2.5E-14 98.3 6.5 136 62-226 3-140 (148)
166 PF00176 SNF2_N: SNF2 family N 98.9 2.9E-09 6.3E-14 109.8 8.9 160 52-223 1-173 (299)
167 COG0610 Type I site-specific r 98.7 2.7E-06 5.7E-11 100.7 24.9 140 64-223 274-414 (962)
168 KOG1015 Transcription regulato 98.7 1.4E-06 3E-11 97.3 20.5 117 268-417 1126-1269(1567)
169 KOG0921 Dosage compensation co 98.5 8E-07 1.7E-11 98.9 12.6 309 55-422 385-773 (1282)
170 PRK15483 type III restriction- 98.5 2.2E-06 4.8E-11 99.0 15.9 151 64-224 60-240 (986)
171 PF13086 AAA_11: AAA domain; P 98.2 1.9E-05 4.1E-10 77.9 12.7 72 49-121 2-75 (236)
172 KOG0391 SNF2 family DNA-depend 98.1 2.2E-05 4.8E-10 89.7 12.5 125 264-423 1259-1387(1958)
173 KOG0952 DNA/RNA helicase MER3/ 98.1 9.9E-07 2.2E-11 100.0 1.8 225 49-295 928-1165(1230)
174 TIGR00596 rad1 DNA repair prot 98.0 0.00013 2.8E-09 84.4 16.9 70 151-224 5-74 (814)
175 PF13604 AAA_30: AAA domain; P 98.0 3.2E-05 6.9E-10 75.0 10.0 127 48-221 1-130 (196)
176 PF02562 PhoH: PhoH-like prote 98.0 5E-05 1.1E-09 73.6 10.4 142 47-221 3-155 (205)
177 PF12340 DUF3638: Protein of u 97.9 0.0002 4.4E-09 70.1 13.5 159 26-196 3-187 (229)
178 PRK10536 hypothetical protein; 97.8 0.001 2.2E-08 66.5 15.7 144 44-219 55-210 (262)
179 KOG1802 RNA helicase nonsense 97.7 0.00015 3.2E-09 79.1 10.5 85 40-139 402-486 (935)
180 PF13872 AAA_34: P-loop contai 97.7 0.00019 4E-09 72.9 10.6 194 8-226 5-224 (303)
181 TIGR00376 DNA helicase, putati 97.6 0.00059 1.3E-08 77.8 13.4 66 48-121 157-223 (637)
182 KOG0391 SNF2 family DNA-depend 97.6 0.00026 5.6E-09 81.3 10.2 160 50-230 617-784 (1958)
183 PF13307 Helicase_C_2: Helicas 97.6 0.00012 2.7E-09 69.0 6.4 106 282-422 8-149 (167)
184 PF09848 DUF2075: Uncharacteri 97.5 0.0004 8.7E-09 73.7 9.8 108 65-208 3-117 (352)
185 KOG1803 DNA helicase [Replicat 97.4 0.00047 1E-08 75.1 9.1 63 49-119 186-249 (649)
186 TIGR01448 recD_rel helicase, p 97.4 0.0014 3E-08 75.9 13.7 135 42-221 318-452 (720)
187 TIGR01447 recD exodeoxyribonuc 97.4 0.0015 3.2E-08 73.7 13.3 147 50-221 147-295 (586)
188 PRK10875 recD exonuclease V su 97.4 0.0018 3.9E-08 73.2 13.7 146 50-221 154-301 (615)
189 PF13245 AAA_19: Part of AAA d 97.4 0.00068 1.5E-08 55.0 7.6 60 56-119 2-62 (76)
190 KOG1016 Predicted DNA helicase 97.4 0.0065 1.4E-07 67.6 17.1 105 283-420 719-844 (1387)
191 COG3587 Restriction endonuclea 97.3 0.0014 3E-08 73.8 10.9 152 65-227 76-247 (985)
192 PF00580 UvrD-helicase: UvrD/R 97.0 0.0021 4.5E-08 66.5 8.3 125 49-191 1-125 (315)
193 PRK13889 conjugal transfer rel 97.0 0.0094 2E-07 70.6 14.3 126 44-221 343-470 (988)
194 TIGR02768 TraA_Ti Ti-type conj 97.0 0.012 2.7E-07 68.4 15.0 136 33-220 338-475 (744)
195 PF14617 CMS1: U3-containing 9 96.9 0.0022 4.8E-08 64.0 6.7 87 97-192 124-212 (252)
196 KOG1805 DNA replication helica 96.9 0.0057 1.2E-07 70.0 10.6 136 31-194 656-809 (1100)
197 PF13401 AAA_22: AAA domain; P 96.8 0.0036 7.7E-08 55.9 7.0 18 63-80 4-21 (131)
198 KOG1132 Helicase of the DEAD s 96.8 0.0045 9.7E-08 70.2 8.8 39 48-86 21-63 (945)
199 PRK13826 Dtr system oriT relax 96.5 0.038 8.3E-07 66.0 14.9 140 30-221 364-505 (1102)
200 COG1875 NYN ribonuclease and A 96.4 0.0078 1.7E-07 62.3 6.7 149 44-220 224-386 (436)
201 PRK08181 transposase; Validate 96.3 0.063 1.4E-06 54.6 12.8 46 181-226 167-213 (269)
202 PRK06921 hypothetical protein; 96.3 0.068 1.5E-06 54.4 13.0 46 62-115 116-161 (266)
203 cd00009 AAA The AAA+ (ATPases 96.2 0.072 1.6E-06 47.5 11.8 17 63-79 19-35 (151)
204 PRK04296 thymidine kinase; Pro 96.2 0.01 2.2E-07 57.2 6.3 36 64-107 3-38 (190)
205 PRK14974 cell division protein 96.2 0.078 1.7E-06 55.6 13.2 53 181-233 222-275 (336)
206 PRK06526 transposase; Provisio 96.0 0.06 1.3E-06 54.3 11.0 64 181-244 159-233 (254)
207 COG2805 PilT Tfp pilus assembl 96.0 0.015 3.4E-07 58.7 6.5 25 65-90 127-151 (353)
208 cd01120 RecA-like_NTPases RecA 95.8 0.14 3E-06 46.9 12.2 44 180-223 84-137 (165)
209 TIGR02760 TraI_TIGR conjugativ 95.7 1 2.3E-05 58.0 22.7 135 48-221 429-566 (1960)
210 PRK08116 hypothetical protein; 95.7 0.19 4E-06 51.3 13.4 42 65-115 116-157 (268)
211 KOG0298 DEAD box-containing he 95.7 0.022 4.9E-07 67.0 7.1 161 63-232 374-560 (1394)
212 PRK12723 flagellar biosynthesi 95.7 0.18 3.9E-06 54.0 13.6 54 180-233 253-309 (388)
213 PF05970 PIF1: PIF1-like helic 95.6 0.03 6.6E-07 59.7 7.6 58 49-114 2-65 (364)
214 TIGR03420 DnaA_homol_Hda DnaA 95.6 0.082 1.8E-06 52.0 10.2 43 25-80 11-55 (226)
215 smart00491 HELICc2 helicase su 95.6 0.059 1.3E-06 49.3 8.4 43 321-394 32-79 (142)
216 PHA02533 17 large terminase pr 95.6 0.15 3.3E-06 56.9 13.0 73 48-126 59-131 (534)
217 KOG0738 AAA+-type ATPase [Post 95.4 0.099 2.1E-06 54.7 9.9 55 24-78 181-260 (491)
218 smart00382 AAA ATPases associa 95.4 0.047 1E-06 48.2 6.9 18 63-80 2-19 (148)
219 COG3421 Uncharacterized protei 95.4 0.056 1.2E-06 59.2 8.4 142 68-226 2-169 (812)
220 PRK11331 5-methylcytosine-spec 95.3 0.11 2.4E-06 56.2 10.5 32 49-80 180-211 (459)
221 PRK06835 DNA replication prote 95.3 0.33 7.2E-06 50.9 13.8 60 48-116 160-227 (329)
222 PRK13894 conjugal transfer ATP 95.3 0.13 2.8E-06 53.7 10.6 69 35-111 121-190 (319)
223 smart00492 HELICc3 helicase su 95.2 0.13 2.8E-06 47.1 9.2 45 317-394 31-78 (141)
224 PF13871 Helicase_C_4: Helicas 95.2 0.073 1.6E-06 54.0 8.1 65 324-421 52-125 (278)
225 COG1444 Predicted P-loop ATPas 95.1 0.31 6.6E-06 55.9 13.6 157 33-223 199-357 (758)
226 KOG1001 Helicase-like transcri 95.1 0.07 1.5E-06 60.9 8.6 148 64-231 153-302 (674)
227 COG1419 FlhF Flagellar GTP-bin 95.1 0.47 1E-05 50.5 14.0 131 63-233 203-335 (407)
228 PRK14712 conjugal transfer nic 95.1 0.15 3.2E-06 63.2 11.8 128 48-221 835-967 (1623)
229 TIGR02785 addA_Gpos recombinat 95.1 0.095 2.1E-06 64.7 10.3 125 49-192 2-126 (1232)
230 PRK13833 conjugal transfer pro 95.0 0.19 4E-06 52.5 10.7 66 39-112 121-187 (323)
231 KOG0989 Replication factor C, 94.9 0.087 1.9E-06 53.6 7.7 46 177-223 125-170 (346)
232 cd01124 KaiC KaiC is a circadi 94.9 0.066 1.4E-06 50.9 6.8 48 66-122 2-49 (187)
233 PRK10917 ATP-dependent DNA hel 94.9 0.12 2.6E-06 59.9 10.0 70 274-343 301-374 (681)
234 PRK11889 flhF flagellar biosyn 94.9 0.34 7.4E-06 51.7 12.4 53 181-233 320-374 (436)
235 KOG1131 RNA polymerase II tran 94.8 0.13 2.8E-06 55.5 8.9 79 44-126 12-94 (755)
236 TIGR01547 phage_term_2 phage t 94.8 0.099 2.1E-06 56.4 8.4 147 65-235 3-153 (396)
237 PHA02544 44 clamp loader, smal 94.7 0.2 4.3E-06 52.1 10.3 40 181-220 100-139 (316)
238 PRK14964 DNA polymerase III su 94.7 0.73 1.6E-05 50.9 14.9 39 180-219 115-153 (491)
239 PRK13709 conjugal transfer nic 94.7 0.24 5.3E-06 62.2 12.3 130 48-221 967-1099(1747)
240 PF00448 SRP54: SRP54-type pro 94.6 0.52 1.1E-05 45.6 12.2 125 66-226 4-129 (196)
241 TIGR00643 recG ATP-dependent D 94.5 0.14 3.1E-06 58.7 9.2 70 274-343 275-348 (630)
242 PRK08084 DNA replication initi 94.5 0.14 3E-06 51.1 8.1 42 182-223 98-142 (235)
243 PF03354 Terminase_1: Phage Te 94.5 0.19 4.2E-06 55.6 10.0 71 51-125 1-80 (477)
244 PRK05580 primosome assembly pr 94.4 0.24 5.3E-06 57.2 11.0 61 283-343 190-251 (679)
245 PHA03333 putative ATPase subun 94.4 0.89 1.9E-05 51.5 14.7 154 44-222 165-332 (752)
246 PRK12377 putative replication 94.4 0.32 6.9E-06 48.9 10.3 45 64-117 102-146 (248)
247 PRK07952 DNA replication prote 94.3 0.53 1.1E-05 47.2 11.8 45 181-225 162-208 (244)
248 PRK10919 ATP-dependent DNA hel 94.3 0.11 2.4E-06 60.0 7.9 70 48-123 2-71 (672)
249 PRK05703 flhF flagellar biosyn 94.3 0.94 2E-05 49.3 14.4 53 181-233 299-354 (424)
250 TIGR01075 uvrD DNA helicase II 94.2 0.092 2E-06 61.2 7.1 72 47-124 3-74 (715)
251 PRK09183 transposase/IS protei 94.2 0.97 2.1E-05 45.8 13.5 22 60-81 99-120 (259)
252 PRK05642 DNA replication initi 94.1 0.24 5.2E-06 49.3 8.9 44 181-224 97-141 (234)
253 PRK06893 DNA replication initi 94.1 0.11 2.5E-06 51.5 6.5 45 181-225 91-137 (229)
254 PRK08727 hypothetical protein; 94.0 0.27 5.8E-06 49.0 9.0 46 181-226 93-140 (233)
255 PRK07764 DNA polymerase III su 94.0 0.57 1.2E-05 55.1 12.8 39 180-219 119-157 (824)
256 PF05621 TniB: Bacterial TniB 94.0 0.24 5.2E-06 50.8 8.6 113 64-214 62-180 (302)
257 PF00004 AAA: ATPase family as 93.9 0.62 1.3E-05 41.1 10.4 16 182-197 59-74 (132)
258 PLN03025 replication factor C 93.8 0.77 1.7E-05 48.0 12.5 38 181-219 99-136 (319)
259 PRK11773 uvrD DNA-dependent he 93.8 0.13 2.9E-06 59.9 7.3 72 47-124 8-79 (721)
260 PRK05986 cob(I)alamin adenolsy 93.8 0.99 2.1E-05 43.3 11.9 54 180-233 114-169 (191)
261 PRK14958 DNA polymerase III su 93.7 0.56 1.2E-05 52.3 11.7 39 180-219 118-156 (509)
262 PF05729 NACHT: NACHT domain 93.7 0.55 1.2E-05 43.2 10.0 38 184-221 84-129 (166)
263 TIGR00595 priA primosomal prot 93.7 0.34 7.3E-06 54.0 9.8 61 283-343 25-86 (505)
264 PRK11054 helD DNA helicase IV; 93.6 0.32 6.9E-06 56.2 9.8 71 47-123 195-265 (684)
265 PF05127 Helicase_RecD: Helica 93.6 0.047 1E-06 51.7 2.6 124 67-223 1-124 (177)
266 PRK14722 flhF flagellar biosyn 93.6 0.29 6.4E-06 52.0 8.7 25 63-87 137-161 (374)
267 TIGR03689 pup_AAA proteasome A 93.5 0.31 6.8E-06 54.0 9.0 53 24-79 177-232 (512)
268 COG2804 PulE Type II secretory 93.5 0.31 6.7E-06 53.1 8.8 40 50-90 243-284 (500)
269 cd01122 GP4d_helicase GP4d_hel 93.4 0.19 4.1E-06 51.1 6.8 77 36-120 3-79 (271)
270 PRK07003 DNA polymerase III su 93.4 0.58 1.2E-05 53.8 11.0 39 180-219 118-156 (830)
271 TIGR02881 spore_V_K stage V sp 93.4 0.57 1.2E-05 47.5 10.2 17 64-80 43-59 (261)
272 PRK10689 transcription-repair 93.4 0.71 1.5E-05 56.4 12.6 78 99-192 809-890 (1147)
273 TIGR00362 DnaA chromosomal rep 93.3 0.37 8.1E-06 52.1 9.4 45 182-226 200-246 (405)
274 PRK00149 dnaA chromosomal repl 93.2 0.5 1.1E-05 51.9 10.3 47 181-227 211-259 (450)
275 TIGR02782 TrbB_P P-type conjug 93.2 0.35 7.5E-06 50.1 8.5 75 30-112 100-175 (299)
276 PRK08903 DnaA regulatory inact 93.2 0.6 1.3E-05 46.1 9.9 41 182-223 91-132 (227)
277 PTZ00112 origin recognition co 93.2 1.2 2.5E-05 52.1 13.0 40 181-221 869-909 (1164)
278 PRK04195 replication factor C 93.2 0.37 8.1E-06 53.4 9.3 45 25-80 10-56 (482)
279 TIGR00580 mfd transcription-re 93.1 0.36 7.8E-06 57.5 9.4 68 275-342 492-563 (926)
280 PRK14873 primosome assembly pr 93.1 0.66 1.4E-05 53.3 11.2 78 267-344 171-251 (665)
281 TIGR02760 TraI_TIGR conjugativ 93.1 0.53 1.1E-05 60.6 11.4 62 47-115 1018-1084(1960)
282 PRK12402 replication factor C 92.9 0.51 1.1E-05 49.4 9.5 39 180-219 124-162 (337)
283 cd00561 CobA_CobO_BtuR ATP:cor 92.9 1.5 3.2E-05 40.9 11.3 54 179-232 93-148 (159)
284 PRK06731 flhF flagellar biosyn 92.8 1.4 3.1E-05 44.8 12.1 53 181-233 154-208 (270)
285 TIGR01074 rep ATP-dependent DN 92.8 0.31 6.7E-06 56.4 8.1 69 49-123 2-70 (664)
286 CHL00181 cbbX CbbX; Provisiona 92.7 1.1 2.3E-05 46.2 11.2 20 63-82 59-78 (287)
287 PRK07994 DNA polymerase III su 92.7 1.7 3.6E-05 49.7 13.5 38 180-218 118-155 (647)
288 PF13173 AAA_14: AAA domain 92.7 0.83 1.8E-05 40.7 9.2 38 181-221 61-98 (128)
289 PF07728 AAA_5: AAA domain (dy 92.7 0.052 1.1E-06 49.1 1.3 14 65-78 1-14 (139)
290 PRK08769 DNA polymerase III su 92.6 1.2 2.6E-05 46.5 11.4 44 46-90 2-52 (319)
291 PRK12422 chromosomal replicati 92.6 0.77 1.7E-05 50.3 10.4 49 181-229 202-252 (445)
292 PRK00411 cdc6 cell division co 92.5 0.57 1.2E-05 50.3 9.4 16 64-79 56-71 (394)
293 TIGR01073 pcrA ATP-dependent D 92.5 0.25 5.4E-06 57.8 7.0 72 47-124 3-74 (726)
294 PRK13342 recombination factor 92.5 1.2 2.5E-05 48.5 11.8 37 182-223 93-129 (413)
295 PRK14087 dnaA chromosomal repl 92.5 0.52 1.1E-05 51.7 9.1 47 180-226 205-253 (450)
296 KOG0733 Nuclear AAA ATPase (VC 92.5 0.31 6.8E-06 53.9 7.0 54 23-79 505-561 (802)
297 PRK11034 clpA ATP-dependent Cl 92.4 1.1 2.3E-05 52.5 11.7 44 183-226 280-327 (758)
298 COG1474 CDC6 Cdc6-related prot 92.4 1.4 3.1E-05 46.9 11.9 28 181-209 123-150 (366)
299 PF13177 DNA_pol3_delta2: DNA 92.4 1.2 2.5E-05 41.7 10.0 51 180-231 101-151 (162)
300 TIGR00708 cobA cob(I)alamin ad 92.3 0.47 1E-05 44.8 7.2 54 180-233 96-151 (173)
301 PRK14951 DNA polymerase III su 92.2 1.2 2.6E-05 50.7 11.6 39 180-219 123-161 (618)
302 PHA02244 ATPase-like protein 92.2 1.6 3.6E-05 46.2 11.8 22 58-79 114-135 (383)
303 PRK04537 ATP-dependent RNA hel 92.2 0.83 1.8E-05 51.8 10.4 72 99-188 257-332 (572)
304 COG1200 RecG RecG-like helicas 92.0 0.83 1.8E-05 51.4 9.8 75 270-344 298-376 (677)
305 TIGR02639 ClpA ATP-dependent C 92.0 2.1 4.4E-05 50.2 13.7 17 64-80 204-220 (731)
306 PRK09111 DNA polymerase III su 92.0 1.5 3.3E-05 49.8 12.1 40 179-219 130-169 (598)
307 PRK12323 DNA polymerase III su 92.0 1.3 2.7E-05 50.4 11.2 41 180-221 123-163 (700)
308 PRK14086 dnaA chromosomal repl 91.9 0.62 1.3E-05 52.5 8.8 46 181-226 377-424 (617)
309 PRK12726 flagellar biosynthesi 91.9 1.9 4.2E-05 45.9 11.9 22 63-84 206-227 (407)
310 PRK14088 dnaA chromosomal repl 91.9 1.1 2.5E-05 49.0 10.8 49 181-229 194-244 (440)
311 COG1110 Reverse gyrase [DNA re 91.9 0.68 1.5E-05 54.1 9.1 73 269-342 112-190 (1187)
312 PRK14960 DNA polymerase III su 91.9 1.4 3E-05 50.2 11.4 39 180-219 117-155 (702)
313 PRK06645 DNA polymerase III su 91.8 3.6 7.8E-05 45.8 14.6 19 65-83 45-63 (507)
314 PRK05707 DNA polymerase III su 91.8 1.4 3E-05 46.3 10.9 40 49-89 4-47 (328)
315 COG4962 CpaF Flp pilus assembl 91.8 0.35 7.6E-06 50.2 6.2 62 44-114 153-215 (355)
316 PRK14721 flhF flagellar biosyn 91.8 1.9 4.2E-05 46.6 12.2 42 63-109 191-232 (420)
317 TIGR01650 PD_CobS cobaltochela 91.8 1.2 2.6E-05 46.5 10.2 21 59-79 60-80 (327)
318 KOG0344 ATP-dependent RNA heli 91.8 2 4.4E-05 47.3 12.1 97 72-191 366-466 (593)
319 PHA03368 DNA packaging termina 91.7 1.1 2.4E-05 50.7 10.3 135 64-224 255-392 (738)
320 COG1198 PriA Primosomal protei 91.7 0.57 1.2E-05 53.9 8.3 80 265-344 226-307 (730)
321 COG1197 Mfd Transcription-repa 91.6 0.63 1.4E-05 55.4 8.7 94 98-211 802-899 (1139)
322 PRK14961 DNA polymerase III su 91.6 2.7 5.8E-05 44.8 13.0 39 180-219 118-156 (363)
323 PRK00771 signal recognition pa 91.5 2.3 4.9E-05 46.5 12.4 49 183-231 177-226 (437)
324 PRK14952 DNA polymerase III su 91.5 1.9 4.1E-05 48.8 12.1 39 180-219 117-155 (584)
325 PF05876 Terminase_GpA: Phage 91.4 0.7 1.5E-05 52.1 8.7 72 48-126 16-90 (557)
326 PRK13764 ATPase; Provisional 91.4 0.92 2E-05 51.3 9.5 26 62-88 256-281 (602)
327 PRK13341 recombination factor 91.4 1.5 3.3E-05 50.9 11.6 41 182-227 110-150 (725)
328 TIGR01425 SRP54_euk signal rec 91.4 3.9 8.4E-05 44.4 13.9 19 65-83 102-120 (429)
329 PRK06904 replicative DNA helic 91.3 1.1 2.4E-05 49.5 9.9 117 63-197 221-350 (472)
330 PRK14956 DNA polymerase III su 91.3 0.77 1.7E-05 50.4 8.5 18 65-82 42-59 (484)
331 TIGR00064 ftsY signal recognit 91.3 4.4 9.6E-05 41.3 13.6 22 64-85 73-94 (272)
332 COG0470 HolB ATPase involved i 91.2 0.88 1.9E-05 47.2 8.7 40 179-219 107-146 (325)
333 PRK08691 DNA polymerase III su 91.1 2.2 4.7E-05 48.9 12.1 39 180-219 118-156 (709)
334 PRK06995 flhF flagellar biosyn 91.1 2.2 4.8E-05 47.0 11.9 24 63-86 256-279 (484)
335 KOG0739 AAA+-type ATPase [Post 91.1 3 6.6E-05 42.5 11.7 129 57-244 155-300 (439)
336 TIGR02928 orc1/cdc6 family rep 91.1 1.4 3E-05 46.8 10.3 17 64-80 41-57 (365)
337 PRK10436 hypothetical protein; 91.1 0.58 1.3E-05 51.4 7.4 45 40-88 196-242 (462)
338 TIGR03015 pepcterm_ATPase puta 91.0 3.5 7.5E-05 41.6 12.7 33 48-80 23-60 (269)
339 TIGR03346 chaperone_ClpB ATP-d 91.0 2.3 5E-05 50.7 12.8 45 182-226 267-314 (852)
340 TIGR02880 cbbX_cfxQ probable R 90.9 1.9 4.1E-05 44.3 10.6 18 63-80 58-75 (284)
341 KOG0701 dsRNA-specific nucleas 90.7 0.15 3.2E-06 62.6 2.6 95 285-412 294-400 (1606)
342 cd01129 PulE-GspE PulE/GspE Th 90.6 0.75 1.6E-05 46.7 7.3 45 40-88 58-104 (264)
343 PRK08939 primosomal protein Dn 90.6 1.6 3.4E-05 45.4 9.8 18 63-80 156-173 (306)
344 KOG0331 ATP-dependent RNA heli 90.5 1.1 2.4E-05 49.3 8.8 72 97-186 339-414 (519)
345 PRK14969 DNA polymerase III su 90.3 2.1 4.5E-05 48.0 11.1 39 180-219 118-156 (527)
346 PRK11192 ATP-dependent RNA hel 90.3 1.4 2.9E-05 48.2 9.5 72 98-187 244-319 (434)
347 PRK14723 flhF flagellar biosyn 90.2 2.4 5.2E-05 49.2 11.6 23 64-86 186-208 (767)
348 COG2909 MalT ATP-dependent tra 90.2 0.85 1.8E-05 52.5 7.8 42 182-223 130-171 (894)
349 PRK13900 type IV secretion sys 90.1 0.82 1.8E-05 48.1 7.2 43 61-112 158-200 (332)
350 PF00308 Bac_DnaA: Bacterial d 90.1 0.98 2.1E-05 44.5 7.4 47 180-226 96-144 (219)
351 COG1435 Tdk Thymidine kinase [ 90.0 2.2 4.9E-05 40.8 9.3 104 64-208 5-108 (201)
352 PRK13851 type IV secretion sys 90.0 0.46 1E-05 50.1 5.3 44 60-112 159-202 (344)
353 PRK11823 DNA repair protein Ra 90.0 1.7 3.6E-05 47.7 9.8 58 56-122 68-130 (446)
354 PRK04837 ATP-dependent RNA hel 90.0 1.7 3.7E-05 47.3 9.9 71 99-187 255-329 (423)
355 PRK00440 rfc replication facto 89.9 4.3 9.4E-05 41.9 12.6 38 181-219 102-139 (319)
356 PHA00350 putative assembly pro 89.8 3.1 6.7E-05 44.7 11.3 43 181-223 81-146 (399)
357 KOG2028 ATPase related to the 89.8 1.7 3.7E-05 45.4 8.9 56 183-243 224-279 (554)
358 PRK14957 DNA polymerase III su 89.7 4.2 9.2E-05 45.6 12.8 39 180-219 118-156 (546)
359 KOG0060 Long-chain acyl-CoA tr 89.7 0.43 9.3E-06 52.6 4.8 34 177-210 584-617 (659)
360 TIGR02858 spore_III_AA stage I 89.7 1.8 4E-05 44.1 9.1 24 55-78 100-126 (270)
361 PRK12724 flagellar biosynthesi 89.6 3.8 8.3E-05 44.2 11.8 23 65-87 225-247 (432)
362 COG2256 MGS1 ATPase related to 89.6 2.2 4.7E-05 45.3 9.6 36 183-223 106-141 (436)
363 PF03237 Terminase_6: Terminas 89.5 5.4 0.00012 41.8 13.2 149 67-237 1-154 (384)
364 TIGR03345 VI_ClpV1 type VI sec 89.5 3.5 7.5E-05 49.0 12.6 36 45-80 184-225 (852)
365 TIGR00631 uvrb excinuclease AB 89.5 8.8 0.00019 44.3 15.5 78 98-193 441-522 (655)
366 PRK14963 DNA polymerase III su 89.4 2.6 5.5E-05 47.0 10.8 17 66-82 39-55 (504)
367 TIGR02533 type_II_gspE general 89.4 0.89 1.9E-05 50.4 7.2 37 40-79 220-258 (486)
368 PHA00729 NTP-binding motif con 89.4 1.9 4E-05 42.6 8.6 15 65-79 19-33 (226)
369 PRK14965 DNA polymerase III su 89.4 4.2 9.1E-05 46.2 12.7 39 180-219 118-156 (576)
370 TIGR01243 CDC48 AAA family ATP 89.4 1.6 3.5E-05 51.2 9.6 53 24-79 173-228 (733)
371 PF03796 DnaB_C: DnaB-like hel 89.3 0.86 1.9E-05 46.0 6.5 140 64-221 20-179 (259)
372 COG4626 Phage terminase-like p 89.3 3.2 6.9E-05 45.9 11.1 147 48-220 61-223 (546)
373 COG3973 Superfamily I DNA and 89.2 0.88 1.9E-05 50.4 6.7 91 30-123 186-284 (747)
374 PRK08533 flagellar accessory p 89.2 2.6 5.7E-05 41.8 9.8 51 61-120 22-72 (230)
375 PRK10590 ATP-dependent RNA hel 89.1 2.1 4.6E-05 47.1 9.9 70 99-186 245-318 (456)
376 cd01126 TraG_VirD4 The TraG/Tr 89.1 0.3 6.5E-06 52.5 3.1 46 65-120 1-46 (384)
377 TIGR02525 plasmid_TraJ plasmid 89.0 1 2.2E-05 48.0 7.0 28 62-90 148-175 (372)
378 COG0513 SrmB Superfamily II DN 88.9 2.2 4.8E-05 47.7 10.0 69 99-185 273-345 (513)
379 PRK09112 DNA polymerase III su 88.9 1.3 2.8E-05 47.0 7.6 40 180-220 140-179 (351)
380 KOG0333 U5 snRNP-like RNA heli 88.9 1.8 3.8E-05 47.2 8.5 70 99-186 517-590 (673)
381 PRK11776 ATP-dependent RNA hel 88.8 2.1 4.5E-05 47.2 9.6 72 99-188 242-317 (460)
382 TIGR02538 type_IV_pilB type IV 88.8 1.1 2.4E-05 50.7 7.5 45 40-88 294-340 (564)
383 PRK05563 DNA polymerase III su 88.8 4.1 8.9E-05 46.1 12.0 20 64-83 39-58 (559)
384 TIGR01243 CDC48 AAA family ATP 88.6 2.3 4.9E-05 49.9 10.1 52 25-79 449-503 (733)
385 PHA03372 DNA packaging termina 88.5 6 0.00013 44.4 12.5 132 64-222 203-337 (668)
386 PRK05896 DNA polymerase III su 88.5 3.4 7.3E-05 46.7 10.9 19 64-82 39-57 (605)
387 KOG0732 AAA+-type ATPase conta 88.5 0.85 1.8E-05 54.0 6.4 56 21-79 257-315 (1080)
388 PRK10865 protein disaggregatio 88.4 3.5 7.7E-05 49.1 11.7 44 183-226 273-319 (857)
389 TIGR03499 FlhF flagellar biosy 88.4 1.5 3.2E-05 45.0 7.6 21 64-84 195-215 (282)
390 PF01695 IstB_IS21: IstB-like 88.2 1 2.3E-05 42.8 5.9 46 61-115 45-90 (178)
391 PRK14954 DNA polymerase III su 88.2 5.8 0.00012 45.3 12.7 19 65-83 40-58 (620)
392 CHL00095 clpC Clp protease ATP 88.2 4.2 9E-05 48.3 12.1 17 64-80 201-217 (821)
393 cd03115 SRP The signal recogni 88.1 13 0.00027 34.8 13.3 17 66-82 3-19 (173)
394 KOG0991 Replication factor C, 88.1 1.2 2.6E-05 43.8 6.1 46 180-226 112-157 (333)
395 PTZ00110 helicase; Provisional 88.0 3 6.4E-05 47.1 10.3 71 99-187 377-451 (545)
396 PF02534 T4SS-DNA_transf: Type 88.0 0.47 1E-05 52.4 3.9 49 64-122 45-93 (469)
397 COG1484 DnaC DNA replication p 88.0 1.1 2.3E-05 45.3 6.1 67 45-120 80-153 (254)
398 PF05496 RuvB_N: Holliday junc 87.8 1.2 2.7E-05 43.8 6.1 15 65-79 52-66 (233)
399 PRK07940 DNA polymerase III su 87.7 3.6 7.9E-05 44.3 10.2 41 180-221 116-156 (394)
400 PRK14950 DNA polymerase III su 87.4 5.4 0.00012 45.5 11.9 19 64-82 39-57 (585)
401 PRK06964 DNA polymerase III su 87.3 4.2 9.1E-05 42.9 10.2 40 50-90 3-47 (342)
402 COG2109 BtuR ATP:corrinoid ade 87.2 2.4 5.3E-05 40.3 7.5 54 180-233 121-176 (198)
403 COG1219 ClpX ATP-dependent pro 87.2 0.62 1.3E-05 47.8 3.7 26 63-90 97-122 (408)
404 TIGR02524 dot_icm_DotB Dot/Icm 87.2 1.3 2.9E-05 47.0 6.5 26 62-88 133-158 (358)
405 cd01121 Sms Sms (bacterial rad 87.2 4 8.6E-05 43.7 10.1 50 63-121 82-131 (372)
406 PRK13897 type IV secretion sys 87.1 0.6 1.3E-05 53.0 4.0 49 64-122 159-207 (606)
407 PRK06871 DNA polymerase III su 87.1 7 0.00015 41.0 11.6 40 50-90 4-50 (325)
408 KOG1133 Helicase of the DEAD s 87.0 0.83 1.8E-05 51.2 4.9 42 48-89 15-60 (821)
409 PRK07471 DNA polymerase III su 87.0 2.2 4.7E-05 45.5 8.0 43 179-222 139-181 (365)
410 TIGR00614 recQ_fam ATP-depende 87.0 2.7 5.8E-05 46.5 9.1 61 283-343 51-111 (470)
411 PRK14701 reverse gyrase; Provi 87.0 2.5 5.5E-05 53.4 9.6 61 283-343 122-188 (1638)
412 PRK14949 DNA polymerase III su 86.7 5.3 0.00012 47.1 11.4 38 180-218 118-155 (944)
413 PRK12727 flagellar biosynthesi 86.7 6.8 0.00015 43.6 11.7 23 62-84 349-371 (559)
414 PRK06067 flagellar accessory p 86.7 6.2 0.00013 39.0 10.7 51 63-122 25-75 (234)
415 PRK05973 replicative DNA helic 86.4 1.3 2.9E-05 44.1 5.7 54 60-122 61-114 (237)
416 PRK08699 DNA polymerase III su 86.4 5.9 0.00013 41.6 10.7 39 50-89 3-46 (325)
417 PRK11634 ATP-dependent RNA hel 86.4 3.2 7E-05 47.6 9.5 71 99-187 245-319 (629)
418 KOG0741 AAA+-type ATPase [Post 86.4 3.9 8.5E-05 44.9 9.3 68 30-107 493-572 (744)
419 PRK14959 DNA polymerase III su 86.4 7.1 0.00015 44.4 11.9 19 65-83 40-58 (624)
420 PRK14955 DNA polymerase III su 86.3 7.3 0.00016 42.0 11.8 19 65-83 40-58 (397)
421 TIGR00678 holB DNA polymerase 86.2 3.3 7.2E-05 39.4 8.2 25 65-90 16-40 (188)
422 TIGR00959 ffh signal recogniti 86.1 5.1 0.00011 43.6 10.4 22 65-86 101-122 (428)
423 PRK14962 DNA polymerase III su 86.1 11 0.00025 41.5 13.3 18 65-82 38-55 (472)
424 PRK01297 ATP-dependent RNA hel 86.1 3.4 7.5E-05 45.7 9.4 72 99-188 335-410 (475)
425 cd00984 DnaB_C DnaB helicase C 86.0 3.1 6.6E-05 41.3 8.2 46 62-114 12-60 (242)
426 PRK08006 replicative DNA helic 85.9 4.8 0.0001 44.5 10.2 48 64-119 225-272 (471)
427 TIGR03877 thermo_KaiC_1 KaiC d 85.9 1.4 2.9E-05 44.0 5.5 51 63-122 21-71 (237)
428 PRK08760 replicative DNA helic 85.7 2.3 4.9E-05 47.1 7.6 50 64-121 230-279 (476)
429 TIGR00763 lon ATP-dependent pr 85.6 3.4 7.3E-05 48.8 9.3 17 63-79 347-363 (775)
430 KOG0339 ATP-dependent RNA heli 85.5 6.2 0.00013 43.0 10.2 56 283-342 295-355 (731)
431 PRK10416 signal recognition pa 85.5 7.1 0.00015 40.8 10.7 19 64-82 115-133 (318)
432 cd01130 VirB11-like_ATPase Typ 85.4 1.2 2.7E-05 42.5 4.7 37 41-79 4-41 (186)
433 PRK07399 DNA polymerase III su 85.4 6 0.00013 41.3 10.2 41 179-221 122-162 (314)
434 COG1222 RPT1 ATP-dependent 26S 85.4 0.95 2.1E-05 47.2 4.1 60 17-79 139-201 (406)
435 KOG0741 AAA+-type ATPase [Post 85.4 2.6 5.6E-05 46.2 7.4 113 19-137 209-330 (744)
436 PRK08840 replicative DNA helic 85.1 3.2 6.9E-05 45.8 8.3 67 45-119 199-265 (464)
437 TIGR03878 thermo_KaiC_2 KaiC d 84.7 7.4 0.00016 39.3 10.3 37 62-106 35-71 (259)
438 PRK11057 ATP-dependent DNA hel 84.7 10 0.00022 43.4 12.5 72 99-188 236-311 (607)
439 PF03969 AFG1_ATPase: AFG1-lik 84.6 13 0.00029 39.5 12.5 46 180-226 126-172 (362)
440 PRK08451 DNA polymerase III su 84.6 9.9 0.00022 42.6 11.9 39 180-219 116-154 (535)
441 KOG1513 Nuclear helicase MOP-3 84.5 0.79 1.7E-05 52.0 3.2 154 48-221 264-453 (1300)
442 PRK14971 DNA polymerase III su 84.5 11 0.00024 43.1 12.6 42 178-221 118-159 (614)
443 KOG1133 Helicase of the DEAD s 84.5 14 0.0003 42.0 12.6 107 282-422 628-779 (821)
444 TIGR03819 heli_sec_ATPase heli 84.4 2.2 4.7E-05 45.1 6.4 73 28-111 144-217 (340)
445 CHL00176 ftsH cell division pr 84.3 2.7 5.8E-05 48.2 7.5 54 23-79 177-232 (638)
446 KOG0058 Peptide exporter, ABC 84.2 1.3 2.7E-05 50.4 4.7 146 62-221 493-661 (716)
447 TIGR01389 recQ ATP-dependent D 84.1 4.6 9.9E-05 46.1 9.4 61 283-343 53-113 (591)
448 PRK10867 signal recognition pa 83.9 27 0.00058 38.2 14.6 21 65-85 102-122 (433)
449 PRK04841 transcriptional regul 83.9 7.7 0.00017 46.4 11.7 41 183-223 123-163 (903)
450 PTZ00424 helicase 45; Provisio 83.8 5.7 0.00012 42.7 9.6 72 99-188 267-342 (401)
451 PF10412 TrwB_AAD_bind: Type I 83.7 1.1 2.4E-05 48.2 3.9 49 58-114 10-58 (386)
452 PF12846 AAA_10: AAA-like doma 83.6 1.8 4E-05 44.1 5.4 42 64-113 2-43 (304)
453 PRK13850 type IV secretion sys 83.5 1.1 2.3E-05 51.6 3.9 48 64-121 140-187 (670)
454 cd01127 TrwB Bacterial conjuga 83.3 1.1 2.3E-05 48.7 3.7 50 57-114 36-85 (410)
455 TIGR02868 CydC thiol reductant 83.3 1.6 3.4E-05 49.1 5.1 17 62-78 360-376 (529)
456 PRK14948 DNA polymerase III su 83.2 5.6 0.00012 45.5 9.5 19 64-82 39-57 (620)
457 PRK08058 DNA polymerase III su 83.1 11 0.00023 39.7 10.9 41 179-220 108-148 (329)
458 PRK06321 replicative DNA helic 83.1 5.9 0.00013 43.8 9.3 111 65-195 228-350 (472)
459 PF00437 T2SE: Type II/IV secr 82.9 1.2 2.6E-05 45.2 3.7 43 61-111 125-167 (270)
460 PF01443 Viral_helicase1: Vira 82.9 1.9 4.2E-05 42.4 5.1 13 66-78 1-13 (234)
461 PRK08506 replicative DNA helic 82.6 2.8 6.1E-05 46.4 6.7 48 63-119 192-239 (472)
462 PLN00206 DEAD-box ATP-dependen 82.6 4.4 9.5E-05 45.4 8.3 72 99-187 367-442 (518)
463 TIGR01054 rgy reverse gyrase. 82.3 4.8 0.0001 49.5 9.0 60 283-342 121-187 (1171)
464 PHA00012 I assembly protein 82.3 6.4 0.00014 40.9 8.5 25 66-90 4-28 (361)
465 COG0593 DnaA ATPase involved i 82.2 6 0.00013 42.6 8.7 47 181-227 175-223 (408)
466 COG0630 VirB11 Type IV secreto 82.1 2.6 5.6E-05 43.9 5.8 66 35-111 116-182 (312)
467 PRK06090 DNA polymerase III su 82.0 19 0.00041 37.6 12.1 42 48-90 3-51 (319)
468 COG1132 MdlB ABC-type multidru 82.0 3.7 8E-05 46.5 7.5 39 178-216 480-518 (567)
469 cd00079 HELICc Helicase superf 81.9 9.6 0.00021 33.1 8.8 75 99-191 28-106 (131)
470 COG3972 Superfamily I DNA and 81.9 2 4.4E-05 46.6 4.9 67 50-123 164-230 (660)
471 KOG0734 AAA+-type ATPase conta 81.7 3.4 7.4E-05 45.4 6.5 42 181-222 396-447 (752)
472 KOG0740 AAA+-type ATPase [Post 81.5 30 0.00064 37.5 13.5 79 181-280 245-336 (428)
473 PRK05595 replicative DNA helic 81.3 4.5 9.8E-05 44.4 7.6 48 64-119 202-249 (444)
474 PF13555 AAA_29: P-loop contai 81.2 2 4.2E-05 33.3 3.4 27 62-90 22-48 (62)
475 PRK14953 DNA polymerase III su 81.2 19 0.00042 39.9 12.6 17 66-82 41-57 (486)
476 KOG2004 Mitochondrial ATP-depe 81.2 1.7 3.7E-05 49.2 4.2 45 157-209 488-533 (906)
477 TIGR01420 pilT_fam pilus retra 81.0 3.9 8.3E-05 43.3 6.8 43 62-111 121-163 (343)
478 PRK07133 DNA polymerase III su 80.9 15 0.00034 42.5 11.9 18 65-82 42-59 (725)
479 COG0466 Lon ATP-dependent Lon 80.9 6 0.00013 45.1 8.3 46 157-209 400-445 (782)
480 TIGR03158 cas3_cyano CRISPR-as 80.8 6.2 0.00013 42.0 8.3 72 98-188 271-342 (357)
481 TIGR02397 dnaX_nterm DNA polym 80.7 8.6 0.00019 40.5 9.4 25 64-89 37-61 (355)
482 cd01131 PilT Pilus retraction 80.6 2.4 5.1E-05 41.0 4.6 14 66-79 4-17 (198)
483 PRK05298 excinuclease ABC subu 80.5 48 0.001 38.3 15.9 78 98-193 445-526 (652)
484 TIGR00767 rho transcription te 80.5 5.1 0.00011 43.0 7.3 18 62-79 167-184 (415)
485 cd00268 DEADc DEAD-box helicas 80.4 10 0.00022 36.3 9.1 56 283-342 69-128 (203)
486 KOG2228 Origin recognition com 80.4 13 0.00028 38.8 9.8 17 62-78 48-64 (408)
487 PRK09087 hypothetical protein; 80.3 5.1 0.00011 39.6 7.0 41 184-226 90-131 (226)
488 TIGR02203 MsbA_lipidA lipid A 80.2 2.3 5E-05 48.1 5.1 149 61-219 356-525 (571)
489 cd03247 ABCC_cytochrome_bd The 80.1 1.6 3.5E-05 41.2 3.3 42 178-220 113-154 (178)
490 COG4098 comFA Superfamily II D 80.1 6.6 0.00014 40.9 7.6 93 98-209 304-398 (441)
491 PRK11664 ATP-dependent RNA hel 80.1 11 0.00024 44.6 10.7 73 99-186 212-288 (812)
492 TIGR02640 gas_vesic_GvpN gas v 79.8 1.8 3.9E-05 43.9 3.6 27 54-80 12-38 (262)
493 TIGR00665 DnaB replicative DNA 79.8 7.6 0.00016 42.4 8.8 49 63-119 195-243 (434)
494 TIGR01970 DEAH_box_HrpB ATP-de 79.7 10 0.00022 44.9 10.2 73 99-186 209-285 (819)
495 COG1074 RecB ATP-dependent exo 79.3 3.8 8.2E-05 50.4 6.8 61 62-125 15-75 (1139)
496 PF06733 DEAD_2: DEAD_2; Inte 79.2 0.87 1.9E-05 43.0 1.1 46 148-195 114-159 (174)
497 PRK10787 DNA-binding ATP-depen 79.2 8.6 0.00019 45.3 9.4 31 159-196 401-431 (784)
498 KOG1001 Helicase-like transcri 79.0 0.31 6.7E-06 55.8 -2.4 101 284-416 540-641 (674)
499 PRK13880 conjugal transfer cou 79.0 1.4 3.1E-05 50.4 2.9 46 64-119 176-221 (636)
500 PRK13876 conjugal transfer cou 78.9 1.6 3.4E-05 50.2 3.2 48 64-121 145-192 (663)
No 1
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.7e-136 Score=1027.36 Aligned_cols=535 Identities=50% Similarity=0.813 Sum_probs=481.0
Q ss_pred hcccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCC-CCCCCe
Q 007402 23 EEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPK-SKLAPA 101 (605)
Q Consensus 23 ~~~~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~-~~~~~~ 101 (605)
....+|++||||+||++|+.++||+.||.||+.|||++|+|||++++|+||||||+||+||++|.++..+... ...++.
T Consensus 16 ~~~ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~s 95 (569)
T KOG0346|consen 16 SKEKTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPS 95 (569)
T ss_pred hhhccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccce
Confidence 3348999999999999999999999999999999999999999999999999999999999999999887653 678999
Q ss_pred EEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCC
Q 007402 102 ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS 181 (605)
Q Consensus 102 ~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~ 181 (605)
++|||||+|||+|++.++.++..+|+. .+++++++++++......+|.+.|||||+||++++.++..+.+ ..++.
T Consensus 96 a~iLvPTkEL~qQvy~viekL~~~c~k--~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~---~~~~~ 170 (569)
T KOG0346|consen 96 AVILVPTKELAQQVYKVIEKLVEYCSK--DLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVL---EYLDS 170 (569)
T ss_pred eEEEechHHHHHHHHHHHHHHHHHHHH--hhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccc---hhhhh
Confidence 999999999999999999999999998 8999999999999999999999999999999999999998852 67889
Q ss_pred ceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEEE
Q 007402 182 LKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW 261 (605)
Q Consensus 182 l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~ 261 (605)
+++||+||||++++|||++++..+.+++|+.+|++|||||+++++..|++++|+||+++.+.+. +...+++++||+
T Consensus 171 l~~LVvDEADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~----el~~~dqL~Qy~ 246 (569)
T KOG0346|consen 171 LSFLVVDEADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEG----ELPNPDQLTQYQ 246 (569)
T ss_pred eeeEEechhhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccc----cCCCcccceEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999873 224567899999
Q ss_pred EEccccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcC
Q 007402 262 ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 341 (605)
Q Consensus 262 ~~~~~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd 341 (605)
+.|++.||++++|+++|+.++.|++|||||++++||+|.+||++|||++|+|||+||.|+|+||+++||+|.|+|+||||
T Consensus 247 v~cse~DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD 326 (569)
T KOG0346|consen 247 VKCSEEDKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATD 326 (569)
T ss_pred EEeccchhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccC-CCCCcc-cccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCccEEEE
Q 007402 342 DTQTKEKDQSD-EGGHVD-SRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSL 419 (605)
Q Consensus 342 ~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~~ 419 (605)
..+..+..+++ .|.... ..+.-|+.|.+.|+|||++|||||.+|++|||||+|.++.+||||+|||||++++|++++|
T Consensus 327 ~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSf 406 (569)
T KOG0346|consen 327 DSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSF 406 (569)
T ss_pred CccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEE
Confidence 87533222222 122111 1222233444889999999999999999999999999999999999999999999999999
Q ss_pred eCCchhhHHHHHHHHHhhhhhhcc-CCCCCcccccHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHHHhhhHHHHhhh
Q 007402 420 VSPDEMKIFEEIKSFVGDDENEDS-NIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHF 498 (605)
Q Consensus 420 v~~~e~~~~~~~~~~l~~~~~~~~-~~i~~~~~~~~~~ve~~~yr~~d~~~~~t~~~v~e~r~~ei~~e~l~s~~lk~~f 498 (605)
|+|.+......+++.+....+... ..++||+ |+++++|+||||++|+++++|+.||+++|++||++|+|+||+||+||
T Consensus 407 v~P~e~~g~~~le~~~~d~~~~~~~qilqPY~-f~~eevesfryR~eD~~ravTkvAvreaR~kEikqEll~SeKLK~~F 485 (569)
T KOG0346|consen 407 VSPKEEFGKESLESILKDENRQEGRQILQPYQ-FRMEEVESFRYRAEDALRAVTKVAVREARLKEIKQELLNSEKLKAFF 485 (569)
T ss_pred ecchHHhhhhHHHHHHhhHHhhcCcccccccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 999999888888888877654333 3599999 99999999999999999999999999999999999999999999999
Q ss_pred cCCccchhhhccccccCCCCccCcccCCCccccchhhHHhhhh-----hhhhhhccCCCCcCCCCCCCCCCCCCCCCccc
Q 007402 499 EVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKM-----VKLARAAMGNKNSSRRQGPRRKFRKSDPLKSF 573 (605)
Q Consensus 499 ~~n~~~l~~l~~d~~l~~~~~~~~l~~vp~yl~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~ 573 (605)
|+||+||++|+||++|++..+|+||+|||+||+|+++++..++ .|+ +|+++. ++++..|||++|
T Consensus 486 eeNprdl~lLrhDkpl~~~~~qphL~dvpeYlvp~alr~~~~~~k~r~~g~--~~~r~n---------~~rk~~kp~r~f 554 (569)
T KOG0346|consen 486 EENPRDLQLLRHDKPLRLAIVQPHLKDVPEYLVPEALRGVVKSVKTRAPGF--SPFRNN---------KRRKVQKPLRKF 554 (569)
T ss_pred hcChHHHHHhhcCCcccccccchhhccCchhhCCHHHhhcccccccccCCC--ccchhh---------hhhhccCchhhc
Confidence 9999999999999999999999999999999999999986655 344 333332 334566777777
Q ss_pred ccCcc
Q 007402 574 SAEPT 578 (605)
Q Consensus 574 ~~~~~ 578 (605)
+.+|.
T Consensus 555 ~~kg~ 559 (569)
T KOG0346|consen 555 QPKGG 559 (569)
T ss_pred CCCCC
Confidence 65443
No 2
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-77 Score=596.46 Aligned_cols=390 Identities=35% Similarity=0.518 Sum_probs=356.5
Q ss_pred hhhcccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCC
Q 007402 21 EAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAP 100 (605)
Q Consensus 21 ~~~~~~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~ 100 (605)
..+...+|.+||+++++++|+..+||..||+||+++||.++.|+|||+.|.||||||.||++||+++++.. ...+
T Consensus 56 ~~e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~-----p~~~ 130 (476)
T KOG0330|consen 56 TDESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQE-----PKLF 130 (476)
T ss_pred hhhhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcC-----CCCc
Confidence 35667899999999999999999999999999999999999999999999999999999999999999984 3468
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCC
Q 007402 101 AALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD 180 (605)
Q Consensus 101 ~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~ 180 (605)
++|||+||||||.|+.++++.+.... ++++..+.||++...|...+...|+|+|+||++|++|+.+.. ...+.
T Consensus 131 ~~lVLtPtRELA~QI~e~fe~Lg~~i----glr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tk---gf~le 203 (476)
T KOG0330|consen 131 FALVLTPTRELAQQIAEQFEALGSGI----GLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTK---GFSLE 203 (476)
T ss_pred eEEEecCcHHHHHHHHHHHHHhcccc----CeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhcc---CccHH
Confidence 99999999999999999999997655 799999999999999999999999999999999999999543 47889
Q ss_pred CceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEE
Q 007402 181 SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF 260 (605)
Q Consensus 181 ~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~ 260 (605)
.++++|+||||+++++.|.+.+..|++.+|..+|++|+|||++..+..|....+.+|+.+.... .....+.+.|+
T Consensus 204 ~lk~LVlDEADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~-----ky~tv~~lkQ~ 278 (476)
T KOG0330|consen 204 QLKFLVLDEADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSS-----KYQTVDHLKQT 278 (476)
T ss_pred HhHHHhhchHHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccc-----hhcchHHhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999998877 56677899999
Q ss_pred EEEccccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEc
Q 007402 261 WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIAT 340 (605)
Q Consensus 261 ~~~~~~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaT 340 (605)
|+.++..+|..+|..+++.. ..+.+||||++...+.+++.+|+..|+.+..|||.|+++.|.-.++.|++|..+||+||
T Consensus 279 ylfv~~k~K~~yLV~ll~e~-~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~T 357 (476)
T KOG0330|consen 279 YLFVPGKDKDTYLVYLLNEL-AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCT 357 (476)
T ss_pred eEeccccccchhHHHHHHhh-cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEec
Confidence 99999999999999999854 46899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCccEEEEe
Q 007402 341 DDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLV 420 (605)
Q Consensus 341 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~~v 420 (605)
|+++ ||+|+|.|++|||||+|.+..+||||+|||||+|.+|.+|+||
T Consensus 358 DVaS---------------------------------RGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlV 404 (476)
T KOG0330|consen 358 DVAS---------------------------------RGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLV 404 (476)
T ss_pred chhc---------------------------------ccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEE
Confidence 9976 9999999999999999999999999999999999999999999
Q ss_pred CCchhhHHHHHHHHHhhhhhhccCCCCCcccccHHHHHHhhhhHHHHHH
Q 007402 421 SPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAK 469 (605)
Q Consensus 421 ~~~e~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~ve~~~yr~~d~~~ 469 (605)
+..|. +.+++|+......+..|+ .+.+.+-.+..|+..+.+
T Consensus 405 tqyDv-------e~~qrIE~~~gkkl~~~~-~~~~~~~~l~erv~eA~~ 445 (476)
T KOG0330|consen 405 TQYDV-------ELVQRIEHALGKKLPEYK-VDKNEVMSLNERVAEAQK 445 (476)
T ss_pred ehhhh-------HHHHHHHHHHhcCCCccC-cchHHHHHHHHHHHHHHH
Confidence 99666 444445444444465666 777777777777765543
No 3
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.5e-76 Score=603.08 Aligned_cols=430 Identities=34% Similarity=0.517 Sum_probs=373.6
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEE
Q 007402 25 EKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALV 104 (605)
Q Consensus 25 ~~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~Li 104 (605)
..+|.+|+|+.+|++++..+||..|||||..+||.+|.|+|++++|.||||||+||++|++++++.++. ....+|+||
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk--~~~~TRVLV 257 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPK--KVAATRVLV 257 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcc--cCcceeEEE
Confidence 468999999999999999999999999999999999999999999999999999999999999998654 355789999
Q ss_pred EcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceE
Q 007402 105 LVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKI 184 (605)
Q Consensus 105 lvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~ 184 (605)
|||||||+.|++.+..+++.|+ +|.++.+.||.+...|...|...|||||+||+|+.+|+.+. ....++++.+
T Consensus 258 L~PTRELaiQv~sV~~qlaqFt----~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs---~sf~ldsiEV 330 (691)
T KOG0338|consen 258 LVPTRELAIQVHSVTKQLAQFT----DITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNS---PSFNLDSIEV 330 (691)
T ss_pred EeccHHHHHHHHHHHHHHHhhc----cceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccC---CCccccceeE
Confidence 9999999999999999999998 89999999999999999999999999999999999999987 3588999999
Q ss_pred EEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEEEEEc
Q 007402 185 LVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264 (605)
Q Consensus 185 lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~ 264 (605)
||+||||+|+..||.+.|..|+..+|+++|++||||||++.|..|..+.|.+|+.|.++. .......++|.|+..
T Consensus 331 LvlDEADRMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~-----~~~~a~~LtQEFiRI 405 (691)
T KOG0338|consen 331 LVLDEADRMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDP-----NKDTAPKLTQEFIRI 405 (691)
T ss_pred EEechHHHHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCC-----ccccchhhhHHHhee
Confidence 999999999999999999999999999999999999999999999999999999999987 666777899999877
Q ss_pred c---ccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcC
Q 007402 265 S---ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 341 (605)
Q Consensus 265 ~---~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd 341 (605)
. +.++-.++..++.... +..|||||.+...|.++...|.-.|+++.-|||.|++.+|...++.|++++++||||||
T Consensus 406 R~~re~dRea~l~~l~~rtf-~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTD 484 (691)
T KOG0338|consen 406 RPKREGDREAMLASLITRTF-QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATD 484 (691)
T ss_pred ccccccccHHHHHHHHHHhc-ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEec
Confidence 5 4456666666666433 78999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCccEEEEeC
Q 007402 342 DTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS 421 (605)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~~v~ 421 (605)
+++ ||+||++|..||||++|.+.+.|+||+|||+|+|+.|.+++||.
T Consensus 485 vAs---------------------------------RGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvg 531 (691)
T KOG0338|consen 485 VAS---------------------------------RGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVG 531 (691)
T ss_pred hhh---------------------------------ccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEec
Confidence 976 99999999999999999999999999999999999999999999
Q ss_pred CchhhHHHHHHHHHhhhhhhccCCCCCcccccHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHHHhhhHHHHhhhcCC
Q 007402 422 PDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVN 501 (605)
Q Consensus 422 ~~e~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~ve~~~yr~~d~~~~~t~~~v~e~r~~ei~~e~l~s~~lk~~f~~n 501 (605)
..+.+.++.+.+--.. ....++.-. ++...|+.|+..++..-..+..+...|...+|+..--..-+
T Consensus 532 E~dRkllK~iik~~~~----a~~klk~R~-i~~~~Iek~~~~ieemE~~iq~vl~eE~~ekel~~ae~ql~--------- 597 (691)
T KOG0338|consen 532 ESDRKLLKEIIKSSTK----AGSKLKNRN-IPPEVIEKFRKKIEEMEDTIQAVLDEEREEKELSKAEAQLE--------- 597 (691)
T ss_pred cccHHHHHHHHhhhhh----cccchhhcC-CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHH---------
Confidence 9887555443332110 122233333 67788999999888877777777666665555443322221
Q ss_pred ccchhhhccccccCCC
Q 007402 502 PKDLDLLKHDKDLSKK 517 (605)
Q Consensus 502 ~~~l~~l~~d~~l~~~ 517 (605)
..-+.|.|..+....
T Consensus 598 -k~en~Le~g~ei~ar 612 (691)
T KOG0338|consen 598 -KGENMLEHGDEIYAR 612 (691)
T ss_pred -HHHHHHhhccccccC
Confidence 122457776666543
No 4
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.6e-72 Score=591.76 Aligned_cols=370 Identities=35% Similarity=0.505 Sum_probs=341.2
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhc-CCCCCCCCCeEE
Q 007402 25 EKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNE-SSPKSKLAPAAL 103 (605)
Q Consensus 25 ~~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~-~~~~~~~~~~~L 103 (605)
...|.+++|++.+..+|...||..|||||.++||.+++|+|++..|.||||||+||++|+++++... .......++++|
T Consensus 90 ~~~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vL 169 (519)
T KOG0331|consen 90 SAAFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVL 169 (519)
T ss_pred chhhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEE
Confidence 3489999999999999999999999999999999999999999999999999999999999999873 223345689999
Q ss_pred EEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCce
Q 007402 104 VLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLK 183 (605)
Q Consensus 104 ilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~ 183 (605)
||+||||||.|+...+..+...+ .++..+++|+.+...|...+..+.||+|+||+||.++++.+. ..++.+.
T Consensus 170 VL~PTRELA~QV~~~~~~~~~~~----~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~----~~l~~v~ 241 (519)
T KOG0331|consen 170 VLAPTRELAVQVQAEAREFGKSL----RLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGS----LNLSRVT 241 (519)
T ss_pred EEcCcHHHHHHHHHHHHHHcCCC----CccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCC----cccccee
Confidence 99999999999999999988765 578999999999999999999999999999999999999986 8899999
Q ss_pred EEEEeCcchhccCCcHHHHHHHHhhCC-CCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEEEE
Q 007402 184 ILVLDEADLLLSYGYEDDLKALSAVIP-RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWI 262 (605)
Q Consensus 184 ~lViDEad~i~~~g~~~~l~~i~~~lp-~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~ 262 (605)
++|+||||+|+++||+++++.|+..+| +..|++++|||+|.++..|...|+.+|..+.+.... ......++.|...
T Consensus 242 ylVLDEADrMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~---~~~a~~~i~qive 318 (519)
T KOG0331|consen 242 YLVLDEADRMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKK---ELKANHNIRQIVE 318 (519)
T ss_pred EEEeccHHhhhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchh---hhhhhcchhhhhh
Confidence 999999999999999999999999994 556899999999999999999999999999886522 2345568999999
Q ss_pred EccccchHHHHHHHHHhhc--CCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEc
Q 007402 263 SCSERDKLLYILTLLKLEL--VQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIAT 340 (605)
Q Consensus 263 ~~~~~~k~~~l~~llk~~~--~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaT 340 (605)
.|++..|...|..+|.... ..+|+||||+++..|..|...|...++++..+||+.++.+|..+++.|+.|.+.|||||
T Consensus 319 ~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVAT 398 (519)
T KOG0331|consen 319 VCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVAT 398 (519)
T ss_pred hcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEc
Confidence 9999999988888888664 57799999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCccEEEEe
Q 007402 341 DDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLV 420 (605)
Q Consensus 341 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~~v 420 (605)
|+++ ||+|+++|++|||||+|.++++|+||+|||||+|+.|+|++|+
T Consensus 399 dVAa---------------------------------RGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tff 445 (519)
T KOG0331|consen 399 DVAA---------------------------------RGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFF 445 (519)
T ss_pred cccc---------------------------------ccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEE
Confidence 9987 9999999999999999999999999999999999999999999
Q ss_pred CCchhhHHHHHHHHHhhh
Q 007402 421 SPDEMKIFEEIKSFVGDD 438 (605)
Q Consensus 421 ~~~e~~~~~~~~~~l~~~ 438 (605)
+..+......+.++++..
T Consensus 446 t~~~~~~a~~l~~~l~e~ 463 (519)
T KOG0331|consen 446 TSDNAKLARELIKVLREA 463 (519)
T ss_pred eHHHHHHHHHHHHHHHHc
Confidence 999988777777777543
No 5
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.6e-70 Score=599.66 Aligned_cols=365 Identities=37% Similarity=0.565 Sum_probs=333.7
Q ss_pred cCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEE
Q 007402 26 KSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVL 105 (605)
Q Consensus 26 ~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~Lil 105 (605)
.+|++|+|++.++++|.++||..|||||..+||.++.|+|+++.|+||||||+||++|+++.+..... .....+|||
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~---~~~~~aLil 105 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVE---RKYVSALIL 105 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccc---cCCCceEEE
Confidence 67999999999999999999999999999999999999999999999999999999999999764211 111119999
Q ss_pred cCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEE
Q 007402 106 VPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKIL 185 (605)
Q Consensus 106 vPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~l 185 (605)
+||||||.|+++.+..+..++. .+++..++|+.+...+...+..++||||+||+|+++|+..+. +.++.+.++
T Consensus 106 ~PTRELA~Qi~~~~~~~~~~~~---~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~----l~l~~v~~l 178 (513)
T COG0513 106 APTRELAVQIAEELRKLGKNLG---GLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGK----LDLSGVETL 178 (513)
T ss_pred CCCHHHHHHHHHHHHHHHhhcC---CccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCC----cchhhcCEE
Confidence 9999999999999999998764 477999999999999999898889999999999999999884 889999999
Q ss_pred EEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEEEEEcc
Q 007402 186 VLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265 (605)
Q Consensus 186 ViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~~ 265 (605)
|+||||.|+++||.+++..|+..+|...|+++||||+++.+..+...++.+|..+.+.... .......+.|+|+.+.
T Consensus 179 VlDEADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~---~~~~~~~i~q~~~~v~ 255 (513)
T COG0513 179 VLDEADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEK---LERTLKKIKQFYLEVE 255 (513)
T ss_pred EeccHhhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEcccc---ccccccCceEEEEEeC
Confidence 9999999999999999999999999999999999999999999999999999988886411 2236778999999999
Q ss_pred ccc-hHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCC
Q 007402 266 ERD-KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ 344 (605)
Q Consensus 266 ~~~-k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~ 344 (605)
..+ |+.+|+.+++... ..++||||++...|..|...|...|+.++.+||+|++..|.++++.|++|.++||||||+++
T Consensus 256 ~~~~k~~~L~~ll~~~~-~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaa 334 (513)
T COG0513 256 SEEEKLELLLKLLKDED-EGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAA 334 (513)
T ss_pred CHHHHHHHHHHHHhcCC-CCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhh
Confidence 876 9999999998755 44799999999999999999999999999999999999999999999999999999999976
Q ss_pred cccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCccEEEEeCCc-
Q 007402 345 TKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPD- 423 (605)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~~v~~~- 423 (605)
||||+++|++|||||+|.+++.|+||+|||||+|..|.|++|+.+.
T Consensus 335 ---------------------------------RGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~ 381 (513)
T COG0513 335 ---------------------------------RGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEE 381 (513)
T ss_pred ---------------------------------ccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHH
Confidence 9999999999999999999999999999999999999999999986
Q ss_pred hhhHHHHHHHHHhh
Q 007402 424 EMKIFEEIKSFVGD 437 (605)
Q Consensus 424 e~~~~~~~~~~l~~ 437 (605)
|...+..+++.+..
T Consensus 382 e~~~l~~ie~~~~~ 395 (513)
T COG0513 382 EVKKLKRIEKRLER 395 (513)
T ss_pred HHHHHHHHHHHHhc
Confidence 77777777766543
No 6
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=4.2e-69 Score=551.62 Aligned_cols=426 Identities=28% Similarity=0.411 Sum_probs=362.9
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEE
Q 007402 24 EEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAAL 103 (605)
Q Consensus 24 ~~~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~L 103 (605)
....|+++.|++..++|+.++||..+|++|+.+||.++.|+|+++.|.||||||+||+||+++.++..+... .++..+|
T Consensus 80 ~~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~-r~~~~vl 158 (543)
T KOG0342|consen 80 TTFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKP-RNGTGVL 158 (543)
T ss_pred hhhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCC-CCCeeEE
Confidence 356799999999999999999999999999999999999999999999999999999999999999865443 4788999
Q ss_pred EEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCce
Q 007402 104 VLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLK 183 (605)
Q Consensus 104 ilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~ 183 (605)
|+|||||||.|++.+++.+..+.. .+.+..+.|+.+.......+..+++|+|+||+||++|+.+.. .....+++
T Consensus 159 Ii~PTRELA~Q~~~eak~Ll~~h~---~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~---~f~~r~~k 232 (543)
T KOG0342|consen 159 IICPTRELAMQIFAEAKELLKYHE---SITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTS---GFLFRNLK 232 (543)
T ss_pred EecccHHHHHHHHHHHHHHHhhCC---CcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCC---cchhhccc
Confidence 999999999999999999998874 478888889988877777777799999999999999999864 46667889
Q ss_pred EEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCC-CeEEEcCCccCccccccCCCcEEEEE
Q 007402 184 ILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHN-PYILTLPEVGDVKDEVIPKNVQQFWI 262 (605)
Q Consensus 184 ~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~-p~~i~l~~~~~~~~~~~~~~l~q~~~ 262 (605)
++|+||||++++.||+++|..|+..+|+.+|++|||||.++.|+.+....+.. |+.+...+.+ ...+...+.|.|+
T Consensus 233 ~lvlDEADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~---~~~The~l~Qgyv 309 (543)
T KOG0342|consen 233 CLVLDEADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGG---ERETHERLEQGYV 309 (543)
T ss_pred eeEeecchhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCC---CcchhhcccceEE
Confidence 99999999999999999999999999999999999999999999999988765 8888776532 3456678999999
Q ss_pred EccccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 007402 263 SCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 342 (605)
Q Consensus 263 ~~~~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~ 342 (605)
.++...++.+++.+++.+....++||||+|......++..|+...++|..+||.++++.|..+..+|.+.+-.||+|||+
T Consensus 310 v~~~~~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDV 389 (543)
T KOG0342|consen 310 VAPSDSRFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDV 389 (543)
T ss_pred eccccchHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecch
Confidence 99999999999999998887799999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCccEEEEeCC
Q 007402 343 TQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSP 422 (605)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~~v~~ 422 (605)
++ ||+|||+|++||+||+|.++++||||+|||||.|..|.+++|+.|
T Consensus 390 aA---------------------------------RGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p 436 (543)
T KOG0342|consen 390 AA---------------------------------RGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAP 436 (543)
T ss_pred hh---------------------------------ccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeCh
Confidence 76 999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHhhhhhhccCCCCCcccccHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHH-------HHHHhhhHHHH
Q 007402 423 DEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDL-------RNEILNSEKLK 495 (605)
Q Consensus 423 ~e~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~ve~~~yr~~d~~~~~t~~~v~e~r~~ei-------~~e~l~s~~lk 495 (605)
.|...+..+++ ..+.+++ |....++...--.++... .+.+.++. .--.++|..|+
T Consensus 437 ~El~Flr~LK~----------lpl~~~e-~~~~~~~~v~~~~~~li~-------~~y~~~~aak~ay~syl~~y~s~slk 498 (543)
T KOG0342|consen 437 WELGFLRYLKK----------LPLEEFE-FPPLKPEDVQSQLEKLIS-------KNYSLKEAAKEAYKSYLGAYNSHSLK 498 (543)
T ss_pred hHHHHHHHHhh----------CCCcccC-CCCCCHHHHHHHHHHHHH-------HHhhHHHHHHHHHHhhhhhccchhhh
Confidence 98866665551 1233333 332223322222222211 12222222 22357889999
Q ss_pred hhhcCCccchhhhcc
Q 007402 496 AHFEVNPKDLDLLKH 510 (605)
Q Consensus 496 ~~f~~n~~~l~~l~~ 510 (605)
.-|..|-.||..+-+
T Consensus 499 ~~~~~~~l~La~~~~ 513 (543)
T KOG0342|consen 499 DIFNVNLLELAAVAK 513 (543)
T ss_pred cccccchhhHHHHHH
Confidence 999888777764443
No 7
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-69 Score=534.33 Aligned_cols=375 Identities=35% Similarity=0.488 Sum_probs=337.6
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEE
Q 007402 24 EEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAAL 103 (605)
Q Consensus 24 ~~~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~L 103 (605)
...+|+.|||++|+.+.|..+|+..|||||..|||.+|+|+|+|.+|.||||||+||.+|+++++-.. ..+..+|
T Consensus 5 t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsed-----P~giFal 79 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSED-----PYGIFAL 79 (442)
T ss_pred ccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccC-----CCcceEE
Confidence 45789999999999999999999999999999999999999999999999999999999999998763 5588999
Q ss_pred EEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCce
Q 007402 104 VLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLK 183 (605)
Q Consensus 104 ilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~ 183 (605)
|+.|||||+.|+.+.|..+.+.. .+++..+.|+++.-.+...|..+|||||+||+++.+++.++.-.....+.+++
T Consensus 80 vlTPTrELA~QiaEQF~alGk~l----~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlk 155 (442)
T KOG0340|consen 80 VLTPTRELALQIAEQFIALGKLL----NLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLK 155 (442)
T ss_pred EecchHHHHHHHHHHHHHhcccc----cceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhcee
Confidence 99999999999999998876554 78999999999999999999999999999999999999877433345678999
Q ss_pred EEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEEEEE
Q 007402 184 ILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWIS 263 (605)
Q Consensus 184 ~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~ 263 (605)
++|+||||.+++-+|.+++..+.+.+|..+|+++||||+++.+..+...-..++....++. ..+....+.+.|.|+.
T Consensus 156 flVlDEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~---~~~vstvetL~q~yI~ 232 (442)
T KOG0340|consen 156 FLVLDEADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEV---IDGVSTVETLYQGYIL 232 (442)
T ss_pred eEEecchhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEec---cCCCCchhhhhhheee
Confidence 9999999999999999999999999999999999999999999888776666643322222 1156677889999999
Q ss_pred ccccchHHHHHHHHHhhcC--CCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcC
Q 007402 264 CSERDKLLYILTLLKLELV--QKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 341 (605)
Q Consensus 264 ~~~~~k~~~l~~llk~~~~--~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd 341 (605)
|+...|-.+++.+++.... .+.++||||+...|..|+..|+..++++..+||.||+.+|...+.+|+.+...||||||
T Consensus 233 ~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTD 312 (442)
T KOG0340|consen 233 VSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATD 312 (442)
T ss_pred cchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEec
Confidence 9999999999999986554 77899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCccEEEEeC
Q 007402 342 DTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS 421 (605)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~~v~ 421 (605)
+++ ||+|+|.|.+|||||+|.++..||||+|||+|+|+.|.+|+||+
T Consensus 313 VAs---------------------------------RGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt 359 (442)
T KOG0340|consen 313 VAS---------------------------------RGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVT 359 (442)
T ss_pred hhh---------------------------------cCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEec
Confidence 976 99999999999999999999999999999999999999999999
Q ss_pred CchhhHHHHHHHHHhhhhhhccCCCCCcc
Q 007402 422 PDEMKIFEEIKSFVGDDENEDSNIIAPFP 450 (605)
Q Consensus 422 ~~e~~~~~~~~~~l~~~~~~~~~~i~~~~ 450 (605)
+.|. +.+..+++..+..+.+|+
T Consensus 360 ~rDv-------~l~~aiE~~igkKl~e~~ 381 (442)
T KOG0340|consen 360 QRDV-------ELLQAIEEEIGKKLTEYN 381 (442)
T ss_pred hhhH-------HHHHHHHHHHhccccccc
Confidence 8766 556666666655677777
No 8
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=3.4e-67 Score=541.32 Aligned_cols=356 Identities=29% Similarity=0.464 Sum_probs=330.8
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEE
Q 007402 24 EEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAAL 103 (605)
Q Consensus 24 ~~~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~L 103 (605)
...-|++|+|+.+.+++|.+.+|..||.||+.+||.+|.|+|||..|.||||||+||++|+++.+...++.. ..|.-||
T Consensus 67 ~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~-~DGlGal 145 (758)
T KOG0343|consen 67 TIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSP-TDGLGAL 145 (758)
T ss_pred hhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCC-CCCceeE
Confidence 456899999999999999999999999999999999999999999999999999999999999999877653 5688899
Q ss_pred EEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCce
Q 007402 104 VLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLK 183 (605)
Q Consensus 104 ilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~ 183 (605)
||.||||||.|+++++.+...+. ++++..+.||.+.......+ .+.+|+||||+||++|+..+. .+..+++.
T Consensus 146 IISPTRELA~QtFevL~kvgk~h----~fSaGLiiGG~~~k~E~eRi-~~mNILVCTPGRLLQHmde~~---~f~t~~lQ 217 (758)
T KOG0343|consen 146 IISPTRELALQTFEVLNKVGKHH----DFSAGLIIGGKDVKFELERI-SQMNILVCTPGRLLQHMDENP---NFSTSNLQ 217 (758)
T ss_pred EecchHHHHHHHHHHHHHHhhcc----ccccceeecCchhHHHHHhh-hcCCeEEechHHHHHHhhhcC---CCCCCcce
Confidence 99999999999999999998876 78899999998877666554 478999999999999998874 46778999
Q ss_pred EEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEEEEE
Q 007402 184 ILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWIS 263 (605)
Q Consensus 184 ~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~ 263 (605)
+||+||||+|+++||...+..|++++|+.+|++|||||.+..|..|..+.+.+|.+|.+.+.. ....+.++.|+|+.
T Consensus 218 mLvLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a---~~atP~~L~Q~y~~ 294 (758)
T KOG0343|consen 218 MLVLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENA---VAATPSNLQQSYVI 294 (758)
T ss_pred EEEeccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccc---cccChhhhhheEEE
Confidence 999999999999999999999999999999999999999999999999999999999887421 35778899999999
Q ss_pred ccccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHc--CCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcC
Q 007402 264 CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKF--GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 341 (605)
Q Consensus 264 ~~~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~--gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd 341 (605)
|+..+|+.+|+.+++.++ ..++|||+.|+..+..+++.+++. |++...|||.|.+..|..++.+|....--||+|||
T Consensus 295 v~l~~Ki~~L~sFI~shl-k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TD 373 (758)
T KOG0343|consen 295 VPLEDKIDMLWSFIKSHL-KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTD 373 (758)
T ss_pred EehhhHHHHHHHHHHhcc-ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeeh
Confidence 999999999999999876 789999999999999999999875 89999999999999999999999999999999999
Q ss_pred CCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCccEEEEeC
Q 007402 342 DTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS 421 (605)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~~v~ 421 (605)
+++ ||+|||.|++||++|+|.++.+||||+|||+|.+..|.++++++
T Consensus 374 v~a---------------------------------RGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~ 420 (758)
T KOG0343|consen 374 VAA---------------------------------RGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLT 420 (758)
T ss_pred hhh---------------------------------ccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEc
Confidence 965 99999999999999999999999999999999999999999999
Q ss_pred Cchh
Q 007402 422 PDEM 425 (605)
Q Consensus 422 ~~e~ 425 (605)
|.+.
T Consensus 421 psEe 424 (758)
T KOG0343|consen 421 PSEE 424 (758)
T ss_pred chhH
Confidence 9874
No 9
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=2.7e-67 Score=539.89 Aligned_cols=369 Identities=33% Similarity=0.481 Sum_probs=340.9
Q ss_pred hhhcccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCC----C
Q 007402 21 EAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPK----S 96 (605)
Q Consensus 21 ~~~~~~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~----~ 96 (605)
-+.+..+|++.+++..+++.+...||..|||||..|||+.++.+|+|..|.||||||+||++|++-.|....... .
T Consensus 240 lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~ 319 (673)
T KOG0333|consen 240 LPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENN 319 (673)
T ss_pred CCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhc
Confidence 456678999999999999999999999999999999999999999999999999999999999999887655222 4
Q ss_pred CCCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCc
Q 007402 97 KLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSK 176 (605)
Q Consensus 97 ~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~ 176 (605)
..|++++||.|||||++|+.++-.++++.+ +++++.+.|+.+.+.+.-.++.+++|+|+||++|.+.|.+..
T Consensus 320 ~~gpyaiilaptReLaqqIeeEt~kf~~~l----g~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~---- 391 (673)
T KOG0333|consen 320 IEGPYAIILAPTRELAQQIEEETNKFGKPL----GIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRY---- 391 (673)
T ss_pred ccCceeeeechHHHHHHHHHHHHHHhcccc----cceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHH----
Confidence 568999999999999999999999998776 689999999999999988899999999999999999999864
Q ss_pred ccCCCceEEEEeCcchhccCCcHHHHHHHHhhCCCC-------------------------ceEEEEeeecChhHHHHHH
Q 007402 177 SFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRG-------------------------CQCLLMSATSSSDVDKLKK 231 (605)
Q Consensus 177 ~~l~~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~-------------------------~q~il~SATl~~~v~~l~~ 231 (605)
+.++...++|+||||.|+++||++++..++.++|.. +|+++||||+++.++.|..
T Consensus 392 lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar 471 (673)
T KOG0333|consen 392 LVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLAR 471 (673)
T ss_pred HHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHH
Confidence 778999999999999999999999999999999831 6999999999999999999
Q ss_pred HhcCCCeEEEcCCccCccccccCCCcEEEEEEccccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEE
Q 007402 232 LILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 311 (605)
Q Consensus 232 ~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~~~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~ 311 (605)
.|+.+|+++.+.. .......+.|.++.+++.+|+..|..+++.+ ...++|||||++..|..|+..|+..|+.++
T Consensus 472 ~ylr~pv~vtig~-----~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~-~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~ 545 (673)
T KOG0333|consen 472 SYLRRPVVVTIGS-----AGKPTPRVEQKVEMVSEDEKRKKLIEILESN-FDPPIIIFVNTKKGADALAKILEKAGYKVT 545 (673)
T ss_pred HHhhCCeEEEecc-----CCCCccchheEEEEecchHHHHHHHHHHHhC-CCCCEEEEEechhhHHHHHHHHhhccceEE
Confidence 9999999999876 3344457999999999999999999999876 478999999999999999999999999999
Q ss_pred EEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEe
Q 007402 312 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINF 391 (605)
Q Consensus 312 ~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~f 391 (605)
.|||+-.+.+|.++++.|+.|..+||||||++. ||||+|+|++||||
T Consensus 546 tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAg---------------------------------RGIDIpnVSlViny 592 (673)
T KOG0333|consen 546 TLHGGKSQEQRENALADFREGTGDILVATDVAG---------------------------------RGIDIPNVSLVINY 592 (673)
T ss_pred EeeCCccHHHHHHHHHHHHhcCCCEEEEecccc---------------------------------cCCCCCccceeeec
Confidence 999999999999999999999999999999987 99999999999999
Q ss_pred CCCCCchhHHHhhcccccCCCCccEEEEeCCchhhHHHHHHHHHh
Q 007402 392 EMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436 (605)
Q Consensus 392 d~P~s~~~yiqRiGRtgR~g~~G~ai~~v~~~e~~~~~~~~~~l~ 436 (605)
|++.+++.|+||||||||+|+.|+|++|+++.+...+..+...+.
T Consensus 593 dmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq~l~ 637 (673)
T KOG0333|consen 593 DMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLKQALR 637 (673)
T ss_pred chhhhHHHHHHHhccccccccCceeEEEeccchhHHHHHHHHHHH
Confidence 999999999999999999999999999999999877766666554
No 10
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.5e-67 Score=503.70 Aligned_cols=367 Identities=29% Similarity=0.485 Sum_probs=336.3
Q ss_pred hhhhhhcccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCC
Q 007402 18 EEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSK 97 (605)
Q Consensus 18 ~~~~~~~~~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~ 97 (605)
.++......+|++|||.+.+++++...||+.|+.||+.|||.++.|+|++++|..|+|||++|.+.+++.+-. ..
T Consensus 19 Ts~~~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~-----~~ 93 (400)
T KOG0328|consen 19 TSEKVKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDI-----SV 93 (400)
T ss_pred eccCcccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeeccc-----cc
Confidence 3466777889999999999999999999999999999999999999999999999999999999999997755 34
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcc
Q 007402 98 LAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKS 177 (605)
Q Consensus 98 ~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~ 177 (605)
...++|||.|||||+.|+.+.+..+..+. ++.+..+.|+.+.......+..+.++|.+||++++++++.+. +
T Consensus 94 r~tQ~lilsPTRELa~Qi~~vi~alg~~m----nvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~----L 165 (400)
T KOG0328|consen 94 RETQALILSPTRELAVQIQKVILALGDYM----NVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRS----L 165 (400)
T ss_pred ceeeEEEecChHHHHHHHHHHHHHhcccc----cceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhcc----c
Confidence 46889999999999999999999998776 788999999988766667777899999999999999999986 6
Q ss_pred cCCCceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCc
Q 007402 178 FSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNV 257 (605)
Q Consensus 178 ~l~~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l 257 (605)
....+++||+||||.|++.||.+++..+.+++|+++|++++|||+|.++.++...|+.+|+.+-+.. ++.....+
T Consensus 166 ~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkr-----deltlEgI 240 (400)
T KOG0328|consen 166 RTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKR-----DELTLEGI 240 (400)
T ss_pred cccceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEec-----CCCchhhh
Confidence 6788999999999999999999999999999999999999999999999999999999999998877 66777789
Q ss_pred EEEEEEccccc-hHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcE
Q 007402 258 QQFWISCSERD-KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDY 336 (605)
Q Consensus 258 ~q~~~~~~~~~-k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~i 336 (605)
.|||+.++.++ |+..|+.+... +.-..++|||||+....+|.+.|++..+.+..+||+|++.+|..++.+|+.|..+|
T Consensus 241 Kqf~v~ve~EewKfdtLcdLYd~-LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~Srv 319 (400)
T KOG0328|consen 241 KQFFVAVEKEEWKFDTLCDLYDT-LTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRV 319 (400)
T ss_pred hhheeeechhhhhHhHHHHHhhh-hehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceE
Confidence 99999999777 99888887764 34568999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCccE
Q 007402 337 LIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGAS 416 (605)
Q Consensus 337 LIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~a 416 (605)
||+||+.+ ||+|+|.|++|||||+|.+.+.|||||||.||.|++|.|
T Consensus 320 LitTDVwa---------------------------------RGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGva 366 (400)
T KOG0328|consen 320 LITTDVWA---------------------------------RGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVA 366 (400)
T ss_pred EEEechhh---------------------------------ccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceE
Confidence 99999965 999999999999999999999999999999999999999
Q ss_pred EEEeCCchhhHHHHHHHHHh
Q 007402 417 VSLVSPDEMKIFEEIKSFVG 436 (605)
Q Consensus 417 i~~v~~~e~~~~~~~~~~l~ 436 (605)
+.||..+|...+..++.++.
T Consensus 367 inFVk~~d~~~lrdieq~ys 386 (400)
T KOG0328|consen 367 INFVKSDDLRILRDIEQYYS 386 (400)
T ss_pred EEEecHHHHHHHHHHHHHHh
Confidence 99999987765555555544
No 11
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.5e-68 Score=515.77 Aligned_cols=366 Identities=34% Similarity=0.493 Sum_probs=338.9
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEE
Q 007402 25 EKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALV 104 (605)
Q Consensus 25 ~~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~Li 104 (605)
...|+++.|-+.|+..+.+.||+.|+|+|+++||.+|.|+|+|++|..|+|||.||++|+++++.. .....+++|
T Consensus 84 G~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~-----~~~~IQ~~i 158 (459)
T KOG0326|consen 84 GNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDP-----KKNVIQAII 158 (459)
T ss_pred CccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCc-----cccceeEEE
Confidence 468999999999999999999999999999999999999999999999999999999999999866 345788999
Q ss_pred EcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceE
Q 007402 105 LVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKI 184 (605)
Q Consensus 105 lvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~ 184 (605)
+|||||||.|+.+.+..+.+.+ ++.+...+|+++..+..-.+.+..+++|+||+|++++...+. ..+++..+
T Consensus 159 lVPtrelALQtSqvc~~lskh~----~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgV----a~ls~c~~ 230 (459)
T KOG0326|consen 159 LVPTRELALQTSQVCKELSKHL----GIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGV----ADLSDCVI 230 (459)
T ss_pred EeecchhhHHHHHHHHHHhccc----CeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhccc----ccchhceE
Confidence 9999999999999999999888 789999999999877777788899999999999999999986 78899999
Q ss_pred EEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEEEEEc
Q 007402 185 LVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264 (605)
Q Consensus 185 lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~ 264 (605)
+|+||||.+++..|...+..++..+|+..|++++|||+|-.|..+...++++|..|.+-+ +.....++|||..+
T Consensus 231 lV~DEADKlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~------eLtl~GvtQyYafV 304 (459)
T KOG0326|consen 231 LVMDEADKLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLME------ELTLKGVTQYYAFV 304 (459)
T ss_pred EEechhhhhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhh------hhhhcchhhheeee
Confidence 999999999999999999999999999999999999999999999999999999998854 66778999999999
Q ss_pred cccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCC
Q 007402 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ 344 (605)
Q Consensus 265 ~~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~ 344 (605)
.+.+|...|-.++.. +.-..+||||||..+.+.|+....+.|+.|..+|+.|.++.|..++..|++|.++.|||||...
T Consensus 305 ~e~qKvhCLntLfsk-LqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~T 383 (459)
T KOG0326|consen 305 EERQKVHCLNTLFSK-LQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFT 383 (459)
T ss_pred chhhhhhhHHHHHHH-hcccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhh
Confidence 999999888887764 3356799999999999999999999999999999999999999999999999999999999965
Q ss_pred cccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCccEEEEeCCch
Q 007402 345 TKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE 424 (605)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~~v~~~e 424 (605)
||||++.|++|||||+|.++++|+|||||+||.|..|.||.+++.+|
T Consensus 384 ---------------------------------RGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityed 430 (459)
T KOG0326|consen 384 ---------------------------------RGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYED 430 (459)
T ss_pred ---------------------------------cccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhh
Confidence 99999999999999999999999999999999999999999999976
Q ss_pred hhHHHHHHHHHhhhhhhccCCCCCcc
Q 007402 425 MKIFEEIKSFVGDDENEDSNIIAPFP 450 (605)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~~i~~~~ 450 (605)
. ..|.+++++....|+|.+
T Consensus 431 r-------f~L~~IE~eLGtEI~pip 449 (459)
T KOG0326|consen 431 R-------FNLYRIEQELGTEIKPIP 449 (459)
T ss_pred h-------hhHHHHHHHhccccccCC
Confidence 6 455566666555577776
No 12
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=6e-65 Score=551.20 Aligned_cols=362 Identities=32% Similarity=0.469 Sum_probs=325.2
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCC--CCCCCe
Q 007402 24 EEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPK--SKLAPA 101 (605)
Q Consensus 24 ~~~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~--~~~~~~ 101 (605)
+..+|++|+|++.++++|.++||..|||+|++|||.+++|+|++++||||||||+||++|+++.++...... ...+++
T Consensus 6 ~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~ 85 (423)
T PRK04837 6 TEQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPR 85 (423)
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCce
Confidence 347899999999999999999999999999999999999999999999999999999999999998643321 234689
Q ss_pred EEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCC
Q 007402 102 ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS 181 (605)
Q Consensus 102 ~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~ 181 (605)
+|||+||+|||.|+++.+..+...+ ++++..+.|+.+...+...+..+++|+|+||+++.+++..+. ..+++
T Consensus 86 ~lil~PtreLa~Qi~~~~~~l~~~~----~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~----~~l~~ 157 (423)
T PRK04837 86 ALIMAPTRELAVQIHADAEPLAQAT----GLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNH----INLGA 157 (423)
T ss_pred EEEECCcHHHHHHHHHHHHHHhccC----CceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCC----ccccc
Confidence 9999999999999999999988765 688888999988888888888899999999999999998764 67899
Q ss_pred ceEEEEeCcchhccCCcHHHHHHHHhhCCC--CceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEE
Q 007402 182 LKILVLDEADLLLSYGYEDDLKALSAVIPR--GCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259 (605)
Q Consensus 182 l~~lViDEad~i~~~g~~~~l~~i~~~lp~--~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q 259 (605)
+++|||||||+++++||..++..++..+|. ..|.+++|||++..+..+....+.+|..+.+.. .......+.+
T Consensus 158 v~~lViDEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~-----~~~~~~~i~~ 232 (423)
T PRK04837 158 IQVVVLDEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEP-----EQKTGHRIKE 232 (423)
T ss_pred ccEEEEecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcC-----CCcCCCceeE
Confidence 999999999999999999999999999984 567899999999999999999999998887765 3334456788
Q ss_pred EEEEccccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEE
Q 007402 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIA 339 (605)
Q Consensus 260 ~~~~~~~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIa 339 (605)
.++.+...+|...+..++... ...++||||+++..|+.+...|.+.|+.+..+||+|++.+|..+++.|++|+++||||
T Consensus 233 ~~~~~~~~~k~~~l~~ll~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVa 311 (423)
T PRK04837 233 ELFYPSNEEKMRLLQTLIEEE-WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVA 311 (423)
T ss_pred EEEeCCHHHHHHHHHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEE
Confidence 888888888888888888754 3679999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCccEEEE
Q 007402 340 TDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSL 419 (605)
Q Consensus 340 Td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~~ 419 (605)
||+++ ||||+|+|++|||||+|.++.+|+||+|||||+|+.|.|++|
T Consensus 312 Tdv~~---------------------------------rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~ 358 (423)
T PRK04837 312 TDVAA---------------------------------RGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISL 358 (423)
T ss_pred echhh---------------------------------cCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEE
Confidence 99976 899999999999999999999999999999999999999999
Q ss_pred eCCchhhHHHHHH
Q 007402 420 VSPDEMKIFEEIK 432 (605)
Q Consensus 420 v~~~e~~~~~~~~ 432 (605)
+.+.+...+..++
T Consensus 359 ~~~~~~~~~~~i~ 371 (423)
T PRK04837 359 ACEEYALNLPAIE 371 (423)
T ss_pred eCHHHHHHHHHHH
Confidence 9997765444443
No 13
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.7e-65 Score=519.95 Aligned_cols=362 Identities=31% Similarity=0.483 Sum_probs=322.9
Q ss_pred ccCcccCC--CCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeE
Q 007402 25 EKSFEELG--LDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAA 102 (605)
Q Consensus 25 ~~~f~~~~--L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~ 102 (605)
+..|++++ |+++|++++..+||..+||+|..+||+++.++||++.|+||||||+||++|+++.+..+.........-+
T Consensus 3 ~~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vga 82 (567)
T KOG0345|consen 3 PKSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGA 82 (567)
T ss_pred CcchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeE
Confidence 46788886 5599999999999999999999999999999999999999999999999999999876544332224679
Q ss_pred EEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHH-HcCCCcEEEECCchHHHHHhcCCCCCcccCCC
Q 007402 103 LVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAA-LAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS 181 (605)
Q Consensus 103 LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~-l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~ 181 (605)
|||.||||||.|+.+++..+..++. .+.+..+.||.+....... ..++|+|+|||||||.+++.+.. ..+...+
T Consensus 83 lIIsPTRELa~QI~~V~~~F~~~l~---~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~--~~l~~rs 157 (567)
T KOG0345|consen 83 LIISPTRELARQIREVAQPFLEHLP---NLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREA--EKLSFRS 157 (567)
T ss_pred EEecCcHHHHHHHHHHHHHHHHhhh---ccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchh--hhccccc
Confidence 9999999999999999999988864 5888888888777554444 44789999999999999999854 2244669
Q ss_pred ceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEEE
Q 007402 182 LKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW 261 (605)
Q Consensus 182 l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~ 261 (605)
+++||+||||+++++||+..+..|++.+|+.+.+=|||||.+..++.|....++||+.+.+.... ....++.+..+|
T Consensus 158 Le~LVLDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~---~~~tPS~L~~~Y 234 (567)
T KOG0345|consen 158 LEILVLDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKS---KSATPSSLALEY 234 (567)
T ss_pred cceEEecchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccc---cccCchhhccee
Confidence 99999999999999999999999999999999999999999999999999999999999887622 234778899999
Q ss_pred EEccccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHc--CCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEE
Q 007402 262 ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKF--GIKSAILNAELPQNSRLHILEEFNAGLFDYLIA 339 (605)
Q Consensus 262 ~~~~~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~--gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIa 339 (605)
+.|....|+..++.++.. ....++|||.+|+...+....+|..+ ++..+.+||.|.+..|..+++.|.+-.-.+|+|
T Consensus 235 ~v~~a~eK~~~lv~~L~~-~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~ 313 (567)
T KOG0345|consen 235 LVCEADEKLSQLVHLLNN-NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFC 313 (567)
T ss_pred eEecHHHHHHHHHHHHhc-cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEe
Confidence 999999999999999986 44789999999999999988888876 578899999999999999999999988899999
Q ss_pred cCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCccEEEE
Q 007402 340 TDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSL 419 (605)
Q Consensus 340 Td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~~ 419 (605)
||+++ ||||||+|++||+||+|.++++|+||+|||||+|+.|.||+|
T Consensus 314 TDVaA---------------------------------RGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivf 360 (567)
T KOG0345|consen 314 TDVAA---------------------------------RGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVF 360 (567)
T ss_pred ehhhh---------------------------------ccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEE
Confidence 99976 999999999999999999999999999999999999999999
Q ss_pred eCCchhhHH
Q 007402 420 VSPDEMKIF 428 (605)
Q Consensus 420 v~~~e~~~~ 428 (605)
+.|.+..+.
T Consensus 361 l~p~E~aYv 369 (567)
T KOG0345|consen 361 LNPREEAYV 369 (567)
T ss_pred ecccHHHHH
Confidence 999776433
No 14
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=4.1e-64 Score=557.40 Aligned_cols=374 Identities=31% Similarity=0.435 Sum_probs=333.1
Q ss_pred hhhcccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCC
Q 007402 21 EAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAP 100 (605)
Q Consensus 21 ~~~~~~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~ 100 (605)
.+.+..+|++++|++.++++|.++||.+|||+|.++||.+++|+|+|+.||||||||++|++|++..++.........++
T Consensus 125 ~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp 204 (545)
T PTZ00110 125 VPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGP 204 (545)
T ss_pred CCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCc
Confidence 34567799999999999999999999999999999999999999999999999999999999999988764332234578
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCC
Q 007402 101 AALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD 180 (605)
Q Consensus 101 ~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~ 180 (605)
.+|||+||+|||.|+.+.+..+.... .+++..++|+.+...+...+...++|||+||++|.+++..+. ..+.
T Consensus 205 ~~LIL~PTreLa~Qi~~~~~~~~~~~----~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~----~~l~ 276 (545)
T PTZ00110 205 IVLVLAPTRELAEQIREQCNKFGASS----KIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNV----TNLR 276 (545)
T ss_pred EEEEECChHHHHHHHHHHHHHHhccc----CccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCC----CChh
Confidence 99999999999999999999887544 678888999988888888888899999999999999998764 6788
Q ss_pred CceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcC-CCeEEEcCCccCccccccCCCcEE
Q 007402 181 SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILH-NPYILTLPEVGDVKDEVIPKNVQQ 259 (605)
Q Consensus 181 ~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~-~p~~i~l~~~~~~~~~~~~~~l~q 259 (605)
++++|||||||+|++++|...+..|+..+++..|++++|||++.++..+...++. +|+.+.+... ......++.|
T Consensus 277 ~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~----~l~~~~~i~q 352 (545)
T PTZ00110 277 RVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSL----DLTACHNIKQ 352 (545)
T ss_pred hCcEEEeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCC----ccccCCCeeE
Confidence 9999999999999999999999999999999999999999999999999888775 5777766442 1223457888
Q ss_pred EEEEccccchHHHHHHHHHhhc-CCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEE
Q 007402 260 FWISCSERDKLLYILTLLKLEL-VQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLI 338 (605)
Q Consensus 260 ~~~~~~~~~k~~~l~~llk~~~-~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLI 338 (605)
.+..+.+.+|...|..++.... ...++||||+++..|..|...|...|+.+..+||++++.+|..++++|++|...|||
T Consensus 353 ~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILV 432 (545)
T PTZ00110 353 EVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMI 432 (545)
T ss_pred EEEEEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEE
Confidence 8888888888888888877544 467999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCccEEE
Q 007402 339 ATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVS 418 (605)
Q Consensus 339 aTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~ 418 (605)
|||+++ ||||+++|++|||||+|.++.+|+||+|||||+|+.|.|++
T Consensus 433 aTdv~~---------------------------------rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~ 479 (545)
T PTZ00110 433 ATDVAS---------------------------------RGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYT 479 (545)
T ss_pred Ecchhh---------------------------------cCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEE
Confidence 999976 89999999999999999999999999999999999999999
Q ss_pred EeCCchhhHHHHHHHHHhhhh
Q 007402 419 LVSPDEMKIFEEIKSFVGDDE 439 (605)
Q Consensus 419 ~v~~~e~~~~~~~~~~l~~~~ 439 (605)
|+++.+...+..+.+++....
T Consensus 480 ~~~~~~~~~~~~l~~~l~~~~ 500 (545)
T PTZ00110 480 FLTPDKYRLARDLVKVLREAK 500 (545)
T ss_pred EECcchHHHHHHHHHHHHHcc
Confidence 999998877777777766543
No 15
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.2e-65 Score=524.42 Aligned_cols=375 Identities=31% Similarity=0.467 Sum_probs=325.4
Q ss_pred cccCcccCCCCHHHHHHHHH-CCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCC-CCCCCe
Q 007402 24 EEKSFEELGLDLRLVHALNK-KGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPK-SKLAPA 101 (605)
Q Consensus 24 ~~~~f~~~~L~~~l~~al~~-~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~-~~~~~~ 101 (605)
....|+++||++.++..|+. |++..||.||.++||.+|+|+|++|.|+||||||+||++|+++.|..-...- ...|+.
T Consensus 134 ts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ 213 (708)
T KOG0348|consen 134 TSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPY 213 (708)
T ss_pred ccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCce
Confidence 35679999999999999988 7999999999999999999999999999999999999999999998643322 567999
Q ss_pred EEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCC
Q 007402 102 ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS 181 (605)
Q Consensus 102 ~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~ 181 (605)
|||||||||||.|+|+.++++...|. .|--..+-||......+..|..+.+|+|+||+||++||.+.. .+.++.
T Consensus 214 ALVivPTREL~~Q~y~~~qKLl~~~h---WIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~---~i~~s~ 287 (708)
T KOG0348|consen 214 ALVIVPTRELALQIYETVQKLLKPFH---WIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTK---SIKFSR 287 (708)
T ss_pred EEEEechHHHHHHHHHHHHHHhcCce---EEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccc---hheeee
Confidence 99999999999999999999988664 355566778877777888899999999999999999999763 577889
Q ss_pred ceEEEEeCcchhccCCcHHHHHHHHhhC-------------CCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccC-
Q 007402 182 LKILVLDEADLLLSYGYEDDLKALSAVI-------------PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGD- 247 (605)
Q Consensus 182 l~~lViDEad~i~~~g~~~~l~~i~~~l-------------p~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~- 247 (605)
|++||+||||.+++.||+.++..|++.+ |...|.+|+|||+++.|..|..+.+++|+.|.++....
T Consensus 288 LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~ 367 (708)
T KOG0348|consen 288 LRWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQ 367 (708)
T ss_pred eeEEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhh
Confidence 9999999999999999999999999876 22478999999999999999999999999998543110
Q ss_pred -------------------ccccccCCCcEEEEEEccccchHHHHHHHHHhhc---CCCeEEEEecchhHHHHHHHHHHH
Q 007402 248 -------------------VKDEVIPKNVQQFWISCSERDKLLYILTLLKLEL---VQKKALIFTNTIDMAFRLKLFLEK 305 (605)
Q Consensus 248 -------------------~~~~~~~~~l~q~~~~~~~~~k~~~l~~llk~~~---~~~k~IIFv~s~~~~~~L~~~L~~ 305 (605)
......+.++.|.|+.++..-++..|.+++.... ...++|||+.+.+.++.-+..|.+
T Consensus 368 ~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~ 447 (708)
T KOG0348|consen 368 LNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSE 447 (708)
T ss_pred cCcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHh
Confidence 1113456789999999999888888777776432 356999999999998887776654
Q ss_pred c----------------------CCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCccccccc
Q 007402 306 F----------------------GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSK 363 (605)
Q Consensus 306 ~----------------------gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~ 363 (605)
. +.+..-|||.|.+.+|..+++.|....-.||+|||+++
T Consensus 448 ~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAa------------------- 508 (708)
T KOG0348|consen 448 ALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAA------------------- 508 (708)
T ss_pred hhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhh-------------------
Confidence 3 34577899999999999999999999889999999976
Q ss_pred CCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCccEEEEeCCchhhHHHHHHHHHhh
Q 007402 364 KHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437 (605)
Q Consensus 364 ~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~~v~~~e~~~~~~~~~~l~~ 437 (605)
||+|+|+|.+||.||+|.++.+|+||||||+|+|.+|.+++|+.|.|..+.+.+......
T Consensus 509 --------------RGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~~~~ 568 (708)
T KOG0348|consen 509 --------------RGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKHHIM 568 (708)
T ss_pred --------------ccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhhcch
Confidence 999999999999999999999999999999999999999999999998777666655444
No 16
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=2.1e-63 Score=543.23 Aligned_cols=363 Identities=34% Similarity=0.530 Sum_probs=325.8
Q ss_pred cCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCC-CCCCCeEEE
Q 007402 26 KSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPK-SKLAPAALV 104 (605)
Q Consensus 26 ~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~-~~~~~~~Li 104 (605)
++|++|+|+++++++|.++||..|||+|.+|||.+++|+|+|+.||||||||++|++|+++.+....... .....++||
T Consensus 1 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLi 80 (456)
T PRK10590 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALI 80 (456)
T ss_pred CCHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEE
Confidence 3799999999999999999999999999999999999999999999999999999999999987643221 223468999
Q ss_pred EcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceE
Q 007402 105 LVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKI 184 (605)
Q Consensus 105 lvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~ 184 (605)
|+||+|||.|+++.+..+..+. .+.+..++|+.+...+...+...++|+|+||++|++++.... ..++++++
T Consensus 81 l~PtreLa~Qi~~~~~~~~~~~----~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~----~~l~~v~~ 152 (456)
T PRK10590 81 LTPTRELAAQIGENVRDYSKYL----NIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNA----VKLDQVEI 152 (456)
T ss_pred EeCcHHHHHHHHHHHHHHhccC----CCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCC----cccccceE
Confidence 9999999999999999987665 678888999998888877888899999999999999988764 67889999
Q ss_pred EEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEEEEEc
Q 007402 185 LVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264 (605)
Q Consensus 185 lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~ 264 (605)
|||||||+|++++|..++..++..+|...|+++||||+++.+..+...++.+|..+.+.. .......+.+++..+
T Consensus 153 lViDEah~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~-----~~~~~~~i~~~~~~~ 227 (456)
T PRK10590 153 LVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVAR-----RNTASEQVTQHVHFV 227 (456)
T ss_pred EEeecHHHHhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEec-----ccccccceeEEEEEc
Confidence 999999999999999999999999999999999999999999999999999998887755 333445788888888
Q ss_pred cccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCC
Q 007402 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ 344 (605)
Q Consensus 265 ~~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~ 344 (605)
+...+..++..++... ...++||||+++..|..++..|...|+.+..+||+|++.+|..+++.|++|.++||||||+++
T Consensus 228 ~~~~k~~~l~~l~~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~ 306 (456)
T PRK10590 228 DKKRKRELLSQMIGKG-NWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAA 306 (456)
T ss_pred CHHHHHHHHHHHHHcC-CCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHh
Confidence 8888887777776643 356899999999999999999999999999999999999999999999999999999999976
Q ss_pred cccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCccEEEEeCCch
Q 007402 345 TKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE 424 (605)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~~v~~~e 424 (605)
||||+++|++|||||+|.++.+|+||+|||||+|..|.|++|+.+.|
T Consensus 307 ---------------------------------rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d 353 (456)
T PRK10590 307 ---------------------------------RGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDE 353 (456)
T ss_pred ---------------------------------cCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHH
Confidence 89999999999999999999999999999999999999999999988
Q ss_pred hhHHHHHHHHH
Q 007402 425 MKIFEEIKSFV 435 (605)
Q Consensus 425 ~~~~~~~~~~l 435 (605)
...+..+++.+
T Consensus 354 ~~~~~~ie~~l 364 (456)
T PRK10590 354 HKLLRDIEKLL 364 (456)
T ss_pred HHHHHHHHHHh
Confidence 76666555544
No 17
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.2e-62 Score=550.71 Aligned_cols=362 Identities=35% Similarity=0.522 Sum_probs=328.9
Q ss_pred hcccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeE
Q 007402 23 EEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAA 102 (605)
Q Consensus 23 ~~~~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~ 102 (605)
+...+|++|+|++.++++|.++||.+|||+|+++||.+++|+|+|+.||||||||+||++|+++.+... ...+++
T Consensus 3 ~~~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~-----~~~~~~ 77 (629)
T PRK11634 3 EFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE-----LKAPQI 77 (629)
T ss_pred cccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc-----cCCCeE
Confidence 345679999999999999999999999999999999999999999999999999999999999988652 336789
Q ss_pred EEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCc
Q 007402 103 LVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSL 182 (605)
Q Consensus 103 LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l 182 (605)
||||||+|||.|+++.+..+..+.. ++.++.++|+.+...+...+...++|||+||+++.+++..+. ..++++
T Consensus 78 LIL~PTreLa~Qv~~~l~~~~~~~~---~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~----l~l~~l 150 (629)
T PRK11634 78 LVLAPTRELAVQVAEAMTDFSKHMR---GVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGT----LDLSKL 150 (629)
T ss_pred EEEeCcHHHHHHHHHHHHHHHhhcC---CceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCC----cchhhc
Confidence 9999999999999999999877653 588899999999888888888899999999999999998764 678999
Q ss_pred eEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEEEE
Q 007402 183 KILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWI 262 (605)
Q Consensus 183 ~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~ 262 (605)
.+|||||||.|+.++|.+++..++..+|..+|+++||||+++.+..+...++.+|..+.+.. .......+.|.|+
T Consensus 151 ~~lVlDEAd~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~-----~~~~~~~i~q~~~ 225 (629)
T PRK11634 151 SGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQS-----SVTTRPDISQSYW 225 (629)
T ss_pred eEEEeccHHHHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccC-----ccccCCceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999887765 3344557888888
Q ss_pred EccccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 007402 263 SCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 342 (605)
Q Consensus 263 ~~~~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~ 342 (605)
.+...+|...+..++.... ..++||||+++..+..|+..|...|+.+..+||+|++.+|..+++.|+.|+++||||||+
T Consensus 226 ~v~~~~k~~~L~~~L~~~~-~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv 304 (629)
T PRK11634 226 TVWGMRKNEALVRFLEAED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 (629)
T ss_pred EechhhHHHHHHHHHHhcC-CCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcch
Confidence 8888888888888887543 568999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCccEEEEeCC
Q 007402 343 TQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSP 422 (605)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~~v~~ 422 (605)
++ ||||+|+|++|||||+|.++.+|+||+|||||+|+.|.|++|+.+
T Consensus 305 ~a---------------------------------rGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~ 351 (629)
T PRK11634 305 AA---------------------------------RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVEN 351 (629)
T ss_pred Hh---------------------------------cCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEech
Confidence 76 899999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHH
Q 007402 423 DEMKIFEEIKSFV 435 (605)
Q Consensus 423 ~e~~~~~~~~~~l 435 (605)
.+...+..+++.+
T Consensus 352 ~e~~~l~~ie~~~ 364 (629)
T PRK11634 352 RERRLLRNIERTM 364 (629)
T ss_pred HHHHHHHHHHHHh
Confidence 8775555555443
No 18
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=6.5e-63 Score=540.92 Aligned_cols=359 Identities=34% Similarity=0.485 Sum_probs=327.2
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEE
Q 007402 25 EKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALV 104 (605)
Q Consensus 25 ~~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~Li 104 (605)
..+|++|+|++.++++|.++||.+|||+|++|||.+++|+|++++||||||||+||++|+++.+... ...+++||
T Consensus 3 ~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~-----~~~~~~li 77 (460)
T PRK11776 3 MTAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK-----RFRVQALV 77 (460)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhc-----cCCceEEE
Confidence 4689999999999999999999999999999999999999999999999999999999999988542 23568999
Q ss_pred EcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceE
Q 007402 105 LVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKI 184 (605)
Q Consensus 105 lvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~ 184 (605)
|+||+|||.|+++.++.+..... .+++..++|+.+...+...+...++|+|+||+++.+++..+. ..++++++
T Consensus 78 l~PtreLa~Q~~~~~~~~~~~~~---~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~----~~l~~l~~ 150 (460)
T PRK11776 78 LCPTRELADQVAKEIRRLARFIP---NIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGT----LDLDALNT 150 (460)
T ss_pred EeCCHHHHHHHHHHHHHHHhhCC---CcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCC----ccHHHCCE
Confidence 99999999999999998876543 578889999999988888888999999999999999998764 67889999
Q ss_pred EEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEEEEEc
Q 007402 185 LVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264 (605)
Q Consensus 185 lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~ 264 (605)
|||||||+|+++||..++..++..+|...|+++||||+++.+..+...++.+|..+.+.. . .....+.++++.+
T Consensus 151 lViDEad~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~-----~-~~~~~i~~~~~~~ 224 (460)
T PRK11776 151 LVLDEADRMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVES-----T-HDLPAIEQRFYEV 224 (460)
T ss_pred EEEECHHHHhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECc-----C-CCCCCeeEEEEEe
Confidence 999999999999999999999999999999999999999999999999999999888755 2 2344688999999
Q ss_pred cccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCC
Q 007402 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ 344 (605)
Q Consensus 265 ~~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~ 344 (605)
+..+|...+..++... ...++||||+++..|+.++..|...|+.+..+||+|++.+|..+++.|++|.++||||||+++
T Consensus 225 ~~~~k~~~l~~ll~~~-~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~ 303 (460)
T PRK11776 225 SPDERLPALQRLLLHH-QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAA 303 (460)
T ss_pred CcHHHHHHHHHHHHhc-CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccc
Confidence 9888988888888653 367899999999999999999999999999999999999999999999999999999999976
Q ss_pred cccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCccEEEEeCCch
Q 007402 345 TKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE 424 (605)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~~v~~~e 424 (605)
||||+++|++|||||+|.++.+|+||+|||||+|+.|.|++|+.+.|
T Consensus 304 ---------------------------------rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e 350 (460)
T PRK11776 304 ---------------------------------RGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEE 350 (460)
T ss_pred ---------------------------------cccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhH
Confidence 89999999999999999999999999999999999999999999987
Q ss_pred hhHHHHHHHHH
Q 007402 425 MKIFEEIKSFV 435 (605)
Q Consensus 425 ~~~~~~~~~~l 435 (605)
...+..+++.+
T Consensus 351 ~~~~~~i~~~~ 361 (460)
T PRK11776 351 MQRANAIEDYL 361 (460)
T ss_pred HHHHHHHHHHh
Confidence 76555555544
No 19
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=7.6e-63 Score=549.14 Aligned_cols=364 Identities=29% Similarity=0.463 Sum_probs=325.2
Q ss_pred cCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCC--CCCCCeEE
Q 007402 26 KSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPK--SKLAPAAL 103 (605)
Q Consensus 26 ~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~--~~~~~~~L 103 (605)
.+|++|+|++.|+++|.++||..|||||+++||.+++|+|+++.||||||||++|++|+++.++...... ....+++|
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 5799999999999999999999999999999999999999999999999999999999999987643211 12357999
Q ss_pred EEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCce
Q 007402 104 VLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLK 183 (605)
Q Consensus 104 ilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~ 183 (605)
||+||+|||.|+++.+..+...+ ++++..++|+.+...+...+...++|||+||++|++++.... ...+..++
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~----~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~---~~~l~~v~ 161 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADL----GLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHK---VVSLHACE 161 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccC----CceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhcc---ccchhhee
Confidence 99999999999999999887654 688999999999988888888899999999999999997652 25678899
Q ss_pred EEEEeCcchhccCCcHHHHHHHHhhCCC--CceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEEE
Q 007402 184 ILVLDEADLLLSYGYEDDLKALSAVIPR--GCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW 261 (605)
Q Consensus 184 ~lViDEad~i~~~g~~~~l~~i~~~lp~--~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~ 261 (605)
+|||||||+|++++|..++..++..+|. ..|+++||||++..+..+...++.+|..+.+.. .......+.+++
T Consensus 162 ~lViDEAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~-----~~~~~~~i~q~~ 236 (572)
T PRK04537 162 ICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVET-----ETITAARVRQRI 236 (572)
T ss_pred eeEecCHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEecc-----ccccccceeEEE
Confidence 9999999999999999999999999987 789999999999999999999999987776654 334455788888
Q ss_pred EEccccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcC
Q 007402 262 ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 341 (605)
Q Consensus 262 ~~~~~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd 341 (605)
+.+...+|...+..++... ...++||||+++..|+.|+..|...|+.++.+||+|++.+|..+++.|++|.++||||||
T Consensus 237 ~~~~~~~k~~~L~~ll~~~-~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTd 315 (572)
T PRK04537 237 YFPADEEKQTLLLGLLSRS-EGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATD 315 (572)
T ss_pred EecCHHHHHHHHHHHHhcc-cCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEeh
Confidence 8888888888888887643 356899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCccEEEEeC
Q 007402 342 DTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS 421 (605)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~~v~ 421 (605)
+++ ||||+++|++|||||+|.++.+|+||+|||||.|..|.|++|++
T Consensus 316 v~a---------------------------------rGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~ 362 (572)
T PRK04537 316 VAA---------------------------------RGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFAC 362 (572)
T ss_pred hhh---------------------------------cCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEec
Confidence 976 89999999999999999999999999999999999999999999
Q ss_pred CchhhHHHHHHHHH
Q 007402 422 PDEMKIFEEIKSFV 435 (605)
Q Consensus 422 ~~e~~~~~~~~~~l 435 (605)
+.+...+..++..+
T Consensus 363 ~~~~~~l~~i~~~~ 376 (572)
T PRK04537 363 ERYAMSLPDIEAYI 376 (572)
T ss_pred HHHHHHHHHHHHHH
Confidence 98776655555543
No 20
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=3.8e-62 Score=539.93 Aligned_cols=371 Identities=27% Similarity=0.414 Sum_probs=327.7
Q ss_pred hhhcccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCC--CCCC
Q 007402 21 EAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSP--KSKL 98 (605)
Q Consensus 21 ~~~~~~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~--~~~~ 98 (605)
.+.+..+|++++|++.++++|..+||..|||+|.+|||.++.|+|+++.||||||||++|++|++..++..... ....
T Consensus 116 ~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~ 195 (518)
T PLN00206 116 VPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQR 195 (518)
T ss_pred CCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccC
Confidence 34667899999999999999999999999999999999999999999999999999999999999988753211 1235
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCccc
Q 007402 99 APAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSF 178 (605)
Q Consensus 99 ~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~ 178 (605)
++++|||+||+|||.|+.+.+..+.... .+.+..+.|+.....+...+..+++|+|+||++|.+++..+. ..
T Consensus 196 ~~~aLIL~PTreLa~Qi~~~~~~l~~~~----~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~----~~ 267 (518)
T PLN00206 196 NPLAMVLTPTRELCVQVEDQAKVLGKGL----PFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHD----IE 267 (518)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCC----CceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCC----cc
Confidence 7899999999999999999988876543 577788888888777777788889999999999999998764 67
Q ss_pred CCCceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcE
Q 007402 179 SDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ 258 (605)
Q Consensus 179 l~~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~ 258 (605)
++++.+|||||||+|+++||...+..++..++ ..|+++||||+++.++.+...++.++..+.+.. .......+.
T Consensus 268 l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~-----~~~~~~~v~ 341 (518)
T PLN00206 268 LDNVSVLVLDEVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGN-----PNRPNKAVK 341 (518)
T ss_pred chheeEEEeecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCC-----CCCCCccee
Confidence 89999999999999999999999999999886 589999999999999999999999999888765 233345678
Q ss_pred EEEEEccccchHHHHHHHHHhhc-CCCeEEEEecchhHHHHHHHHHHH-cCCcEEEEcCCCCHHHHHHHHHHHHcCCCcE
Q 007402 259 QFWISCSERDKLLYILTLLKLEL-VQKKALIFTNTIDMAFRLKLFLEK-FGIKSAILNAELPQNSRLHILEEFNAGLFDY 336 (605)
Q Consensus 259 q~~~~~~~~~k~~~l~~llk~~~-~~~k~IIFv~s~~~~~~L~~~L~~-~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~i 336 (605)
+.++.+...++...++.++.... ...++||||+++..+..|+..|.. .|+.+..+||+|++.+|..+++.|++|.++|
T Consensus 342 q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~I 421 (518)
T PLN00206 342 QLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPV 421 (518)
T ss_pred EEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCE
Confidence 88888888888877777776432 246899999999999999999975 6999999999999999999999999999999
Q ss_pred EEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCccE
Q 007402 337 LIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGAS 416 (605)
Q Consensus 337 LIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~a 416 (605)
|||||+++ ||||+++|++|||||+|.++.+|+||+|||||+|..|.|
T Consensus 422 LVaTdvl~---------------------------------rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~a 468 (518)
T PLN00206 422 IVATGVLG---------------------------------RGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTA 468 (518)
T ss_pred EEEecHhh---------------------------------ccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEE
Confidence 99999976 899999999999999999999999999999999999999
Q ss_pred EEEeCCchhhHHHHHHHHHhhh
Q 007402 417 VSLVSPDEMKIFEEIKSFVGDD 438 (605)
Q Consensus 417 i~~v~~~e~~~~~~~~~~l~~~ 438 (605)
++|+++++...+..+.+.++..
T Consensus 469 i~f~~~~~~~~~~~l~~~l~~~ 490 (518)
T PLN00206 469 IVFVNEEDRNLFPELVALLKSS 490 (518)
T ss_pred EEEEchhHHHHHHHHHHHHHHc
Confidence 9999998887777777766653
No 21
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=2.5e-61 Score=524.91 Aligned_cols=361 Identities=33% Similarity=0.530 Sum_probs=321.8
Q ss_pred cCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEE
Q 007402 26 KSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVL 105 (605)
Q Consensus 26 ~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~Lil 105 (605)
++|++|+|++.++++|.++||..||++|+++||.+++|+|++++||||+|||++|++|+++.++..... .....++|||
T Consensus 1 ~~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~-~~~~~~~lil 79 (434)
T PRK11192 1 TTFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRR-KSGPPRILIL 79 (434)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhcccc-CCCCceEEEE
Confidence 379999999999999999999999999999999999999999999999999999999999998764221 2235789999
Q ss_pred cCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEE
Q 007402 106 VPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKIL 185 (605)
Q Consensus 106 vPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~l 185 (605)
+||+|||.|+++.+..+..+. ++.+..++|+.....+...+...++|||+||++|++++..+. ..+.++++|
T Consensus 80 ~Pt~eLa~Q~~~~~~~l~~~~----~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~----~~~~~v~~l 151 (434)
T PRK11192 80 TPTRELAMQVADQARELAKHT----HLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEEN----FDCRAVETL 151 (434)
T ss_pred CCcHHHHHHHHHHHHHHHccC----CcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC----cCcccCCEE
Confidence 999999999999999988765 688999999999888888888899999999999999998764 567889999
Q ss_pred EEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecCh-hHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEEEEEc
Q 007402 186 VLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSS-DVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264 (605)
Q Consensus 186 ViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~~-~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~ 264 (605)
||||||+|++++|..++..+...++...|+++||||++. .+..+...++.+|..+.... ......++.+++..+
T Consensus 152 ViDEah~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~-----~~~~~~~i~~~~~~~ 226 (434)
T PRK11192 152 ILDEADRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEP-----SRRERKKIHQWYYRA 226 (434)
T ss_pred EEECHHHHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecC-----CcccccCceEEEEEe
Confidence 999999999999999999999999999999999999985 57888888999998887655 333455788888877
Q ss_pred cc-cchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 007402 265 SE-RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDT 343 (605)
Q Consensus 265 ~~-~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~ 343 (605)
+. ..+..++..+++. ...+++||||++++.|..++..|...|+.++.+||+|++.+|..+++.|++|.++||||||++
T Consensus 227 ~~~~~k~~~l~~l~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~ 305 (434)
T PRK11192 227 DDLEHKTALLCHLLKQ-PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVA 305 (434)
T ss_pred CCHHHHHHHHHHHHhc-CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEcccc
Confidence 64 5677777777764 236799999999999999999999999999999999999999999999999999999999997
Q ss_pred CcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCccEEEEeCCc
Q 007402 344 QTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPD 423 (605)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~~v~~~ 423 (605)
+ ||||+++|++|||||+|.+...|+||+|||||+|..|.+++|+...
T Consensus 306 ~---------------------------------~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~ 352 (434)
T PRK11192 306 A---------------------------------RGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAH 352 (434)
T ss_pred c---------------------------------cCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHH
Confidence 6 8999999999999999999999999999999999999999999987
Q ss_pred hhhHHHHHHHH
Q 007402 424 EMKIFEEIKSF 434 (605)
Q Consensus 424 e~~~~~~~~~~ 434 (605)
|...+..++++
T Consensus 353 d~~~~~~i~~~ 363 (434)
T PRK11192 353 DHLLLGKIERY 363 (434)
T ss_pred HHHHHHHHHHH
Confidence 76555554443
No 22
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-63 Score=513.32 Aligned_cols=390 Identities=32% Similarity=0.500 Sum_probs=335.7
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCC-CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCC------CC
Q 007402 25 EKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEG-KDVVARAKTGSGKTFAYLLPLLHRLFNESSPK------SK 97 (605)
Q Consensus 25 ~~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~g-kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~------~~ 97 (605)
...|..|+|+..++++|..+||..||+||+.+||.+..| .||+..|.||||||+||.||+++.++...... ..
T Consensus 180 vsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~ 259 (731)
T KOG0347|consen 180 VSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSA 259 (731)
T ss_pred hHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHh
Confidence 567999999999999999999999999999999999999 79999999999999999999999777643221 12
Q ss_pred CCCe--EEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCC
Q 007402 98 LAPA--ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQS 175 (605)
Q Consensus 98 ~~~~--~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~ 175 (605)
..++ +||++||||||.|+.+.+..++.+. +|++..++||.....|.++|...|+|||+||+||+.++..+...
T Consensus 260 k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t----~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~- 334 (731)
T KOG0347|consen 260 KYVKPIALVVTPTRELAHQVKQHLKAIAEKT----QIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTH- 334 (731)
T ss_pred ccCcceeEEecChHHHHHHHHHHHHHhcccc----CeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhh-
Confidence 3444 9999999999999999999988765 89999999999999999999999999999999999999877531
Q ss_pred cccCCCceEEEEeCcchhccCCcHHHHHHHHhhCC-----CCceEEEEeeecChh---------------------HHHH
Q 007402 176 KSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP-----RGCQCLLMSATSSSD---------------------VDKL 229 (605)
Q Consensus 176 ~~~l~~l~~lViDEad~i~~~g~~~~l~~i~~~lp-----~~~q~il~SATl~~~---------------------v~~l 229 (605)
...++++++||+||||+|+..||.+.+..|++.+. ...|++.||||++-. ++.|
T Consensus 335 l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~L 414 (731)
T KOG0347|consen 335 LGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHL 414 (731)
T ss_pred hhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHH
Confidence 24568899999999999999999999999999886 367999999998632 1222
Q ss_pred HH-H-hcCCCeEEEcCCccCccccccCCCcEEEEEEccccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcC
Q 007402 230 KK-L-ILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFG 307 (605)
Q Consensus 230 ~~-~-~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~~~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~g 307 (605)
.+ . +..+|.+|.+.. .......+....+.|+..+|-.+||.++-.. .|++|||||+++.+.+|.-+|...+
T Consensus 415 mk~ig~~~kpkiiD~t~-----q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ry--PGrTlVF~NsId~vKRLt~~L~~L~ 487 (731)
T KOG0347|consen 415 MKKIGFRGKPKIIDLTP-----QSATASTLTESLIECPPLEKDLYLYYFLTRY--PGRTLVFCNSIDCVKRLTVLLNNLD 487 (731)
T ss_pred HHHhCccCCCeeEecCc-----chhHHHHHHHHhhcCCccccceeEEEEEeec--CCceEEEechHHHHHHHHHHHhhcC
Confidence 22 2 234678898877 6677778888889999999998888887643 7999999999999999999999999
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccE
Q 007402 308 IKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 387 (605)
Q Consensus 308 i~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~ 387 (605)
|....||+.|.+..|...+++|.+..-.||||||+++ ||+|||+|.+
T Consensus 488 i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAA---------------------------------RGLDIp~V~H 534 (731)
T KOG0347|consen 488 IPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAA---------------------------------RGLDIPGVQH 534 (731)
T ss_pred CCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhh---------------------------------ccCCCCCcce
Confidence 9999999999999999999999999999999999987 9999999999
Q ss_pred EEEeCCCCCchhHHHhhcccccCCCCccEEEEeCCchhhHHHHHHHHHhhhhhhccCCCCCcccccHHHHHHhhhhHH
Q 007402 388 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAE 465 (605)
Q Consensus 388 VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~~v~~~e~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~ve~~~yr~~ 465 (605)
||||-.|.+.+-|+||.|||+|+++.|.++.|+.|.+...+..+.+-|.+.+. +.-|| +.+.-+..++.|+.
T Consensus 535 VIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~~~KL~ktL~k~~d-----lpifP-v~~~~m~~lkeRvr 606 (731)
T KOG0347|consen 535 VIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGPLKKLCKTLKKKED-----LPIFP-VETDIMDALKERVR 606 (731)
T ss_pred EEEeecCCccceeEecccccccccCCCeEEEEeChHHhHHHHHHHHHHhhccC-----CCcee-ccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998777666666655433 22255 45555566655553
No 23
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.5e-62 Score=488.24 Aligned_cols=375 Identities=32% Similarity=0.450 Sum_probs=338.6
Q ss_pred hhhcccCccc-CCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCC-CCC
Q 007402 21 EAEEEKSFEE-LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPK-SKL 98 (605)
Q Consensus 21 ~~~~~~~f~~-~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~-~~~ 98 (605)
-+.+.-+|++ |.-.+.++..+.+.||.+|||||++|||.+|+|+|++..|.||+|||++|++|-+-.+....... ...
T Consensus 214 IPnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~ 293 (629)
T KOG0336|consen 214 IPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRN 293 (629)
T ss_pred CCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccC
Confidence 4556678874 67889999999999999999999999999999999999999999999999999887776543322 466
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCccc
Q 007402 99 APAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSF 178 (605)
Q Consensus 99 ~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~ 178 (605)
++.+|++.||+||+.|+.-....+.- + ++..++++|+.+...+...+..+.+|+++||++|.++...+. ..
T Consensus 294 ~p~~lvl~ptreLalqie~e~~kysy---n--g~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~----i~ 364 (629)
T KOG0336|consen 294 GPGVLVLTPTRELALQIEGEVKKYSY---N--GLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNV----IN 364 (629)
T ss_pred CCceEEEeccHHHHHHHHhHHhHhhh---c--CcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCe----ee
Confidence 89999999999999999888776542 2 678888889888889999999999999999999999988775 88
Q ss_pred CCCceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcE
Q 007402 179 SDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ 258 (605)
Q Consensus 179 l~~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~ 258 (605)
+.++.+||+||||.|+++||+..+..|+--+.+.+|+++.|||.|+.|..|...|+.+|.++.+... +......+.
T Consensus 365 l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsL----dL~a~~sVk 440 (629)
T KOG0336|consen 365 LASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSL----DLVAVKSVK 440 (629)
T ss_pred eeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEeccc----ceeeeeeee
Confidence 9999999999999999999999999999999999999999999999999999999999999987552 233445789
Q ss_pred EEEEEccccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEE
Q 007402 259 QFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLI 338 (605)
Q Consensus 259 q~~~~~~~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLI 338 (605)
|.++...+.+|+.++-.+++......|+||||.....|..|..-|.-.||.+-.|||+-.+.+|...++.|+.|+++|||
T Consensus 441 Q~i~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILv 520 (629)
T KOG0336|consen 441 QNIIVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILV 520 (629)
T ss_pred eeEEecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEE
Confidence 99988889999988888888777788999999999999999999988899999999999999999999999999999999
Q ss_pred EcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCccEEE
Q 007402 339 ATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVS 418 (605)
Q Consensus 339 aTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~ 418 (605)
|||.+. ||+|+++|++|+|||+|.+++.|+||+|||||+|+.|++++
T Consensus 521 aTDlaS---------------------------------RGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis 567 (629)
T KOG0336|consen 521 ATDLAS---------------------------------RGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSIS 567 (629)
T ss_pred Eechhh---------------------------------cCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEE
Confidence 999965 99999999999999999999999999999999999999999
Q ss_pred EeCCchhhHHHHHHHHHhhhhhh
Q 007402 419 LVSPDEMKIFEEIKSFVGDDENE 441 (605)
Q Consensus 419 ~v~~~e~~~~~~~~~~l~~~~~~ 441 (605)
|++.++...+..+.++|++.+..
T Consensus 568 ~lt~~D~~~a~eLI~ILe~aeQe 590 (629)
T KOG0336|consen 568 FLTRNDWSMAEELIQILERAEQE 590 (629)
T ss_pred EEehhhHHHHHHHHHHHHHhhhh
Confidence 99999998888888888776554
No 24
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=8.7e-60 Score=517.80 Aligned_cols=368 Identities=34% Similarity=0.524 Sum_probs=324.5
Q ss_pred hhcccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCC--CCCC
Q 007402 22 AEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPK--SKLA 99 (605)
Q Consensus 22 ~~~~~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~--~~~~ 99 (605)
.+....|.+++|++.|+++|.++||.+||++|.++||.+++|+|+|+.||||||||+||++|+++.++...... ....
T Consensus 83 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~ 162 (475)
T PRK01297 83 QEGKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGE 162 (475)
T ss_pred ccCCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCC
Confidence 34467899999999999999999999999999999999999999999999999999999999999998753211 1225
Q ss_pred CeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHH-cCCCcEEEECCchHHHHHhcCCCCCccc
Q 007402 100 PAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL-AGPPDIVIATPGCMPKCLSTGVLQSKSF 178 (605)
Q Consensus 100 ~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l-~~~~dIvV~TP~~l~~~l~~~~~~~~~~ 178 (605)
+++|||+||+||+.|+++.+..+..++ ++.+..+.|+.+...+...+ ...++|+|+||++|++++..+. ..
T Consensus 163 ~~aLil~PtreLa~Q~~~~~~~l~~~~----~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~----~~ 234 (475)
T PRK01297 163 PRALIIAPTRELVVQIAKDAAALTKYT----GLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGE----VH 234 (475)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHhhccC----CCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCC----cc
Confidence 789999999999999999999987665 57888888988776665555 4579999999999999887654 77
Q ss_pred CCCceEEEEeCcchhccCCcHHHHHHHHhhCCC--CceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCC
Q 007402 179 SDSLKILVLDEADLLLSYGYEDDLKALSAVIPR--GCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN 256 (605)
Q Consensus 179 l~~l~~lViDEad~i~~~g~~~~l~~i~~~lp~--~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~ 256 (605)
++++++|||||||.+++++|...+..++..++. ..|++++|||++.++..+...++.+|..+.+.. ......+
T Consensus 235 l~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~-----~~~~~~~ 309 (475)
T PRK01297 235 LDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEP-----ENVASDT 309 (475)
T ss_pred cccCceEEechHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEecc-----CcCCCCc
Confidence 899999999999999999999999999999875 579999999999999999999999999887755 3334456
Q ss_pred cEEEEEEccccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcE
Q 007402 257 VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDY 336 (605)
Q Consensus 257 l~q~~~~~~~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~i 336 (605)
+.+++..+...++..+++.++... ...++||||++++.++.++..|...|+.++.+||++++..|..+++.|++|+++|
T Consensus 310 ~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~v 388 (475)
T PRK01297 310 VEQHVYAVAGSDKYKLLYNLVTQN-PWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRV 388 (475)
T ss_pred ccEEEEEecchhHHHHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcE
Confidence 778888888888888888887653 3568999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCccE
Q 007402 337 LIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGAS 416 (605)
Q Consensus 337 LIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~a 416 (605)
|||||.++ ||||+++|++||+||+|.|+.+|+||+||+||.|..|.+
T Consensus 389 LvaT~~l~---------------------------------~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~ 435 (475)
T PRK01297 389 LVATDVAG---------------------------------RGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVS 435 (475)
T ss_pred EEEccccc---------------------------------cCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceE
Confidence 99999977 899999999999999999999999999999999999999
Q ss_pred EEEeCCchhhHHHHHHHHHh
Q 007402 417 VSLVSPDEMKIFEEIKSFVG 436 (605)
Q Consensus 417 i~~v~~~e~~~~~~~~~~l~ 436 (605)
++|+.++|...+..+++++.
T Consensus 436 i~~~~~~d~~~~~~~~~~~~ 455 (475)
T PRK01297 436 ISFAGEDDAFQLPEIEELLG 455 (475)
T ss_pred EEEecHHHHHHHHHHHHHhC
Confidence 99999887766666655553
No 25
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-61 Score=503.72 Aligned_cols=375 Identities=32% Similarity=0.470 Sum_probs=337.1
Q ss_pred hhhcccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCC-----
Q 007402 21 EAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPK----- 95 (605)
Q Consensus 21 ~~~~~~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~----- 95 (605)
-+....+|++-.|++.+...+...||..|||||+.+||.+..|+|++++|+||||||+||++|++.+++......
T Consensus 69 ~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~ 148 (482)
T KOG0335|consen 69 VPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESG 148 (482)
T ss_pred cCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccC
Confidence 344456899888999999999999999999999999999999999999999999999999999999999865422
Q ss_pred CCCCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCC
Q 007402 96 SKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQS 175 (605)
Q Consensus 96 ~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~ 175 (605)
....+++||++||||||.|++.+.+++.-.. .+.++.++|+.+...+......++||+|+||++|.+.+..+.
T Consensus 149 ~~~~P~~lIlapTReL~~Qi~nea~k~~~~s----~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~--- 221 (482)
T KOG0335|consen 149 GGVYPRALILAPTRELVDQIYNEARKFSYLS----GMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGK--- 221 (482)
T ss_pred CCCCCceEEEeCcHHHhhHHHHHHHhhcccc----cceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcce---
Confidence 1235899999999999999999999886533 688889999998888888899999999999999999999986
Q ss_pred cccCCCceEEEEeCcchhcc-CCcHHHHHHHHhhCCC----CceEEEEeeecChhHHHHHHHhcCC-CeEEEcCCccCcc
Q 007402 176 KSFSDSLKILVLDEADLLLS-YGYEDDLKALSAVIPR----GCQCLLMSATSSSDVDKLKKLILHN-PYILTLPEVGDVK 249 (605)
Q Consensus 176 ~~~l~~l~~lViDEad~i~~-~g~~~~l~~i~~~lp~----~~q~il~SATl~~~v~~l~~~~l~~-p~~i~l~~~~~~~ 249 (605)
+.+++++++||||||.|++ +||.++|..|+..... ..|++|||||.|.++..+...++.+ .+.+.+..
T Consensus 222 -i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~r----- 295 (482)
T KOG0335|consen 222 -ISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGR----- 295 (482)
T ss_pred -eehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEee-----
Confidence 8899999999999999999 9999999999988753 7899999999999999999999886 67777665
Q ss_pred ccccCCCcEEEEEEccccchHHHHHHHHHhhc---CCC-----eEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHH
Q 007402 250 DEVIPKNVQQFWISCSERDKLLYILTLLKLEL---VQK-----KALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 321 (605)
Q Consensus 250 ~~~~~~~l~q~~~~~~~~~k~~~l~~llk~~~---~~~-----k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~ 321 (605)
......++.|.+..+.+.+|...|+.++.... ..+ +++|||.++..|..|..+|.+.++++..+||+-.+.+
T Consensus 296 vg~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~e 375 (482)
T KOG0335|consen 296 VGSTSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIE 375 (482)
T ss_pred eccccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhH
Confidence 34556789999999999999999999887544 345 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHH
Q 007402 322 RLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYV 401 (605)
Q Consensus 322 R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yi 401 (605)
|...+..|+.|.+.+||||++++ ||+|+++|++|||||+|.+..+|+
T Consensus 376 r~~al~~Fr~g~~pvlVaT~Vaa---------------------------------RGlDi~~V~hVInyDmP~d~d~Yv 422 (482)
T KOG0335|consen 376 REQALNDFRNGKAPVLVATNVAA---------------------------------RGLDIPNVKHVINYDMPADIDDYV 422 (482)
T ss_pred HHHHHHHhhcCCcceEEEehhhh---------------------------------cCCCCCCCceeEEeecCcchhhHH
Confidence 99999999999999999999965 999999999999999999999999
Q ss_pred HhhcccccCCCCccEEEEeCCchhhHHHHHHHHHhhhhhh
Q 007402 402 HRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENE 441 (605)
Q Consensus 402 qRiGRtgR~g~~G~ai~~v~~~e~~~~~~~~~~l~~~~~~ 441 (605)
||||||||+|+.|.|++|+...+....+.+.+++..-.+.
T Consensus 423 HRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~ea~q~ 462 (482)
T KOG0335|consen 423 HRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILTEANQE 462 (482)
T ss_pred HhccccccCCCCceeEEEeccccchhHHHHHHHHHHhccc
Confidence 9999999999999999999977777777777777655444
No 26
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.4e-60 Score=482.44 Aligned_cols=371 Identities=31% Similarity=0.459 Sum_probs=339.0
Q ss_pred hhhcccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCC
Q 007402 21 EAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAP 100 (605)
Q Consensus 21 ~~~~~~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~ 100 (605)
.+.+..+|+.+|.|..|..++.+.-|.+|||+|.+++|.++.|+|++-.|.||||||.||+.|++-.+.....-....+|
T Consensus 218 ~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gP 297 (731)
T KOG0339|consen 218 PPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGP 297 (731)
T ss_pred CCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCC
Confidence 45568999999999999999999999999999999999999999999999999999999999999999887665567799
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCC
Q 007402 101 AALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD 180 (605)
Q Consensus 101 ~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~ 180 (605)
.+||+|||||||.|++.++++|++.. +++++.++|+.+...|...|..++.||||||+||++++.-.. ..+.
T Consensus 298 i~vilvPTrela~Qi~~eaKkf~K~y----gl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKa----tn~~ 369 (731)
T KOG0339|consen 298 IGVILVPTRELASQIFSEAKKFGKAY----GLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKA----TNLS 369 (731)
T ss_pred eEEEEeccHHHHHHHHHHHHHhhhhc----cceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhc----ccce
Confidence 99999999999999999999997655 899999999999999999999999999999999999998764 7889
Q ss_pred CceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEE
Q 007402 181 SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF 260 (605)
Q Consensus 181 ~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~ 260 (605)
++.+|||||||+|++.||+..++.|..++.+.+|+++||||++..++.|.+.+|.+|+.+...+. ......++|.
T Consensus 370 rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~v-----gean~dITQ~ 444 (731)
T KOG0339|consen 370 RVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEV-----GEANEDITQT 444 (731)
T ss_pred eeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeeh-----hccccchhhe
Confidence 99999999999999999999999999999999999999999999999999999999998876552 2233467887
Q ss_pred EEEcc-ccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEE
Q 007402 261 WISCS-ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIA 339 (605)
Q Consensus 261 ~~~~~-~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIa 339 (605)
+..|. +..|+..|+.-|-.....|++||||.-...++.+...|...|+.+..+||.+.+.+|..++.+|+++...||||
T Consensus 445 V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~Vlva 524 (731)
T KOG0339|consen 445 VSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVA 524 (731)
T ss_pred eeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEE
Confidence 77775 56677777666666666899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCccEEEE
Q 007402 340 TDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSL 419 (605)
Q Consensus 340 Td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~~ 419 (605)
||+++ ||+|++++..|||||+-.+++.|+||||||||+|..|+++++
T Consensus 525 tDvaa---------------------------------rgldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTl 571 (731)
T KOG0339|consen 525 TDVAA---------------------------------RGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTL 571 (731)
T ss_pred eeHhh---------------------------------cCCCccccceeecccccchhHHHHHHhhhcccccccceeeEE
Confidence 99976 999999999999999999999999999999999999999999
Q ss_pred eCCchhhHHHHHHHHHhh
Q 007402 420 VSPDEMKIFEEIKSFVGD 437 (605)
Q Consensus 420 v~~~e~~~~~~~~~~l~~ 437 (605)
|++.|....-.+.+.|..
T Consensus 572 vTeKDa~fAG~LVnnLe~ 589 (731)
T KOG0339|consen 572 VTEKDAEFAGHLVNNLEG 589 (731)
T ss_pred echhhHHHhhHHHHHHhh
Confidence 999888666555555544
No 27
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.1e-57 Score=491.65 Aligned_cols=364 Identities=29% Similarity=0.462 Sum_probs=317.9
Q ss_pred hhhcccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCC
Q 007402 21 EAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAP 100 (605)
Q Consensus 21 ~~~~~~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~ 100 (605)
+.+...+|++++|++.++++|..+||..|||+|.+||+.+++|+|+++.||||||||++|++|+++.+... ..+.
T Consensus 23 ~~~~~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~-----~~~~ 97 (401)
T PTZ00424 23 YDEIVDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD-----LNAC 97 (401)
T ss_pred cccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC-----CCCc
Confidence 44457899999999999999999999999999999999999999999999999999999999999877532 3367
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCC
Q 007402 101 AALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD 180 (605)
Q Consensus 101 ~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~ 180 (605)
++|||+||++|+.|+.+.+..+.... .+.+..+.|+.........+...++|+|+||+++.+++..+. ..++
T Consensus 98 ~~lil~Pt~~L~~Q~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~----~~l~ 169 (401)
T PTZ00424 98 QALILAPTRELAQQIQKVVLALGDYL----KVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRH----LRVD 169 (401)
T ss_pred eEEEECCCHHHHHHHHHHHHHHhhhc----CceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCC----cccc
Confidence 89999999999999999998887654 567777888877776677777889999999999999998764 6688
Q ss_pred CceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEE
Q 007402 181 SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF 260 (605)
Q Consensus 181 ~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~ 260 (605)
++++|||||||++++.+|...+..++..++...|++++|||+++++..+...++.+|..+.+.. .......+.++
T Consensus 170 ~i~lvViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 244 (401)
T PTZ00424 170 DLKLFILDEADEMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKK-----DELTLEGIRQF 244 (401)
T ss_pred cccEEEEecHHHHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCC-----CCcccCCceEE
Confidence 9999999999999999999999999999999999999999999999999989999988776544 23344567888
Q ss_pred EEEcccc-chHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEE
Q 007402 261 WISCSER-DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIA 339 (605)
Q Consensus 261 ~~~~~~~-~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIa 339 (605)
++.+... .+...+..++.. ....++||||+++..+..+...|...++.+..+||+|+..+|..+++.|++|+++||||
T Consensus 245 ~~~~~~~~~~~~~l~~~~~~-~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLva 323 (401)
T PTZ00424 245 YVAVEKEEWKFDTLCDLYET-LTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLIT 323 (401)
T ss_pred EEecChHHHHHHHHHHHHHh-cCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEE
Confidence 8777643 344555555442 33578999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCccEEEE
Q 007402 340 TDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSL 419 (605)
Q Consensus 340 Td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~~ 419 (605)
|+.++ +|||+|++++||+||+|.+..+|+||+||+||.|+.|.|++|
T Consensus 324 T~~l~---------------------------------~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l 370 (401)
T PTZ00424 324 TDLLA---------------------------------RGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINF 370 (401)
T ss_pred ccccc---------------------------------CCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEE
Confidence 99976 899999999999999999999999999999999999999999
Q ss_pred eCCchhhHHHHHHHHHh
Q 007402 420 VSPDEMKIFEEIKSFVG 436 (605)
Q Consensus 420 v~~~e~~~~~~~~~~l~ 436 (605)
+++.+...+..+++.+.
T Consensus 371 ~~~~~~~~~~~~e~~~~ 387 (401)
T PTZ00424 371 VTPDDIEQLKEIERHYN 387 (401)
T ss_pred EcHHHHHHHHHHHHHHC
Confidence 99988766666655443
No 28
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=2.7e-60 Score=471.84 Aligned_cols=378 Identities=28% Similarity=0.468 Sum_probs=331.2
Q ss_pred HhhhhhhcccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCC--
Q 007402 17 EEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSP-- 94 (605)
Q Consensus 17 ~~~~~~~~~~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~-- 94 (605)
+++..+++-.+|.+|..+..+++.|++-|+.+|||||.+.||.+|+|+|.|..|-||||||++|++|++...+...-.
T Consensus 161 eGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lP 240 (610)
T KOG0341|consen 161 EGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLP 240 (610)
T ss_pred eCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCc
Confidence 455567778999999999999999999999999999999999999999999999999999999999999877653211
Q ss_pred -CCCCCCeEEEEcCcHHHHHHHHHHHHHHHHHhcC--CcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcC
Q 007402 95 -KSKLAPAALVLVPTRELCQQVYSEVMALIELCKG--QVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTG 171 (605)
Q Consensus 95 -~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~--~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~ 171 (605)
....|+..||+||+||||.|+++.+..++..+.. ...++...+.|+.+...|......+.+|||+||+||.++|...
T Consensus 241 f~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK 320 (610)
T KOG0341|consen 241 FARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKK 320 (610)
T ss_pred cccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHh
Confidence 1456899999999999999999999988775432 1147888899999999999999999999999999999999876
Q ss_pred CCCCcccCCCceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCcccc
Q 007402 172 VLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 251 (605)
Q Consensus 172 ~~~~~~~l~~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~ 251 (605)
. ..++-.++|++||||+|+++||+++++.|+.++...+|++|||||+|..+..+.+..+-.|+++.+... .
T Consensus 321 ~----~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRA-----G 391 (610)
T KOG0341|consen 321 I----MSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRA-----G 391 (610)
T ss_pred h----ccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccc-----c
Confidence 5 777888999999999999999999999999999999999999999999999999999999999998773 3
Q ss_pred ccCCCcEEEEEEccccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHc
Q 007402 252 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 331 (605)
Q Consensus 252 ~~~~~l~q~~~~~~~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~ 331 (605)
...-++.|.+-.+..+.|..+++.-|.. ...++||||........+.++|--.|+.++.+||+-.+.+|...++.|+.
T Consensus 392 AAsldViQevEyVkqEaKiVylLeCLQK--T~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~ 469 (610)
T KOG0341|consen 392 AASLDVIQEVEYVKQEAKIVYLLECLQK--TSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRA 469 (610)
T ss_pred ccchhHHHHHHHHHhhhhhhhHHHHhcc--CCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhc
Confidence 3334566666666777787777776653 36789999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCC
Q 007402 332 GLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAY 411 (605)
Q Consensus 332 g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g 411 (605)
|+-+||||||++. .|+|||++.+|||||+|..++.|+||||||||.|
T Consensus 470 gkKDVLVATDVAS---------------------------------KGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg 516 (610)
T KOG0341|consen 470 GKKDVLVATDVAS---------------------------------KGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSG 516 (610)
T ss_pred CCCceEEEecchh---------------------------------ccCCCccchhhccCCChHHHHHHHHHhcccCCCC
Confidence 9999999999976 7999999999999999999999999999999999
Q ss_pred CCccEEEEeCCchh-hHHHHHHHHHhhh
Q 007402 412 NTGASVSLVSPDEM-KIFEEIKSFVGDD 438 (605)
Q Consensus 412 ~~G~ai~~v~~~e~-~~~~~~~~~l~~~ 438 (605)
+.|.|.+|+..... ..+-.+...|...
T Consensus 517 ~~GiATTfINK~~~esvLlDLK~LL~Ea 544 (610)
T KOG0341|consen 517 KTGIATTFINKNQEESVLLDLKHLLQEA 544 (610)
T ss_pred CcceeeeeecccchHHHHHHHHHHHHHh
Confidence 99999999986533 3444444444433
No 29
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-57 Score=452.26 Aligned_cols=376 Identities=30% Similarity=0.458 Sum_probs=319.0
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCC--CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeE
Q 007402 25 EKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEG--KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAA 102 (605)
Q Consensus 25 ~~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~g--kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~ 102 (605)
..+|++|+|.|.|+++|..|+|..|+.||+.|+|++|.. +++|+++..|+|||+||.+.++.++-. ....|.+
T Consensus 89 ~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~-----~~~~PQ~ 163 (477)
T KOG0332|consen 89 AKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDP-----DVVVPQC 163 (477)
T ss_pred cccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCc-----cccCCCc
Confidence 578999999999999999999999999999999999987 899999999999999999999988755 2447889
Q ss_pred EEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCc
Q 007402 103 LVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSL 182 (605)
Q Consensus 103 LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l 182 (605)
+.|+||||||.|+-+++.+..+++ ++.+....-+.... .-..+ ..+|+|+||+.+.+++..- ....++.+
T Consensus 164 iCLaPtrELA~Q~~eVv~eMGKf~----~ita~yair~sk~~-rG~~i--~eqIviGTPGtv~Dlm~kl---k~id~~ki 233 (477)
T KOG0332|consen 164 ICLAPTRELAPQTGEVVEEMGKFT----ELTASYAIRGSKAK-RGNKL--TEQIVIGTPGTVLDLMLKL---KCIDLEKI 233 (477)
T ss_pred eeeCchHHHHHHHHHHHHHhcCce----eeeEEEEecCcccc-cCCcc--hhheeeCCCccHHHHHHHH---HhhChhhc
Confidence 999999999999999999998877 45544443332110 00111 2489999999999998862 13778899
Q ss_pred eEEEEeCcchhcc-CCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEEE
Q 007402 183 KILVLDEADLLLS-YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW 261 (605)
Q Consensus 183 ~~lViDEad~i~~-~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~ 261 (605)
+++|+||||.|++ .||.++-..|...+|+++|.+++|||..+.+..+...++.+|..+.+.. ++....++.|+|
T Consensus 234 kvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~-----eel~L~~IkQly 308 (477)
T KOG0332|consen 234 KVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKR-----EELALDNIKQLY 308 (477)
T ss_pred eEEEecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeeh-----hhccccchhhhe
Confidence 9999999999886 4899999999999999999999999999999999999999999998877 677788999999
Q ss_pred EEcc-ccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEc
Q 007402 262 ISCS-ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIAT 340 (605)
Q Consensus 262 ~~~~-~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaT 340 (605)
+.|. +.+|+..|..+.-+ +.-|..||||.++..|.+|+..|.+.|..+.+|||+|...+|..++++|+.|...|||+|
T Consensus 309 v~C~~~~~K~~~l~~lyg~-~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitT 387 (477)
T KOG0332|consen 309 VLCACRDDKYQALVNLYGL-LTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITT 387 (477)
T ss_pred eeccchhhHHHHHHHHHhh-hhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEe
Confidence 9997 66789888886654 446889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCC------CchhHHHhhcccccCCCCc
Q 007402 341 DDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQ------NAAGYVHRIGRTGRAYNTG 414 (605)
Q Consensus 341 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~------s~~~yiqRiGRtgR~g~~G 414 (605)
++.+ ||||++.|+.|||||+|. +++.|+||||||||+|+.|
T Consensus 388 nV~A---------------------------------RGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG 434 (477)
T KOG0332|consen 388 NVCA---------------------------------RGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKG 434 (477)
T ss_pred chhh---------------------------------cccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccc
Confidence 9954 999999999999999995 6899999999999999999
Q ss_pred cEEEEeCCchhhHHHHHHHHHhhhhhhccCCCCCcccccHHHHHHh
Q 007402 415 ASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESL 460 (605)
Q Consensus 415 ~ai~~v~~~e~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~ve~~ 460 (605)
.++.|+...+. .+++..|++++...++....-++.++|.+
T Consensus 435 ~a~n~v~~~~s------~~~mn~iq~~F~~~i~~~~~~d~~E~eki 474 (477)
T KOG0332|consen 435 LAINLVDDKDS------MNIMNKIQKHFNMKIKRLDPDDLDELEKI 474 (477)
T ss_pred eEEEeecccCc------HHHHHHHHHHHhhcceecCCccHHHHHHH
Confidence 99999987643 34445555554333322222455666654
No 30
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-57 Score=454.61 Aligned_cols=362 Identities=32% Similarity=0.515 Sum_probs=328.1
Q ss_pred hhhhhcccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCC
Q 007402 19 EAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKL 98 (605)
Q Consensus 19 ~~~~~~~~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~ 98 (605)
+...+-+.+|++|+|.+.|++.+...||+.|+.||+.||+.+..|.|+++++++|+|||.||++++++.+-. ...
T Consensus 19 sn~~evvdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~-----~~k 93 (397)
T KOG0327|consen 19 SNWNEVVDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDM-----SVK 93 (397)
T ss_pred ccHHHHhhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCc-----chH
Confidence 334455679999999999999999999999999999999999999999999999999999999999998744 244
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHH-HHcCCCcEEEECCchHHHHHhcCCCCCcc
Q 007402 99 APAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRA-ALAGPPDIVIATPGCMPKCLSTGVLQSKS 177 (605)
Q Consensus 99 ~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~-~l~~~~dIvV~TP~~l~~~l~~~~~~~~~ 177 (605)
...||+++|||||+.|+..+...+..+. ++++..+.|+.....+.. .....++|+|+||+++.+.+..+. +
T Consensus 94 e~qalilaPtreLa~qi~~v~~~lg~~~----~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~----l 165 (397)
T KOG0327|consen 94 ETQALILAPTRELAQQIQKVVRALGDHM----DVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGS----L 165 (397)
T ss_pred HHHHHHhcchHHHHHHHHHHHHhhhccc----ceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhcccc----c
Confidence 6789999999999999999998888765 678888888877664443 444579999999999999998874 6
Q ss_pred cCCCceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCc
Q 007402 178 FSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNV 257 (605)
Q Consensus 178 ~l~~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l 257 (605)
....++++|+||||.|++.||.+.+..|..++|...|++++|||++.++..+.+.++++|+.+.+.. +......+
T Consensus 166 ~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk-----~~ltl~gi 240 (397)
T KOG0327|consen 166 STDGIKMFVLDEADEMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKK-----DELTLEGI 240 (397)
T ss_pred cccceeEEeecchHhhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecc-----hhhhhhhe
Confidence 7788999999999999999999999999999999999999999999999999999999999999877 55667889
Q ss_pred EEEEEEccccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEE
Q 007402 258 QQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYL 337 (605)
Q Consensus 258 ~q~~~~~~~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iL 337 (605)
.|+|+.+...+|+..|+.+.+ .-...+||||+...++.+...|..+++.+..+|++|.+..|..++.+|+.|..+||
T Consensus 241 kq~~i~v~k~~k~~~l~dl~~---~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvl 317 (397)
T KOG0327|consen 241 KQFYINVEKEEKLDTLCDLYR---RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVL 317 (397)
T ss_pred eeeeeeccccccccHHHHHHH---hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEE
Confidence 999999999999999999988 35679999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCccEE
Q 007402 338 IATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASV 417 (605)
Q Consensus 338 IaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai 417 (605)
|.||.++ ||+|+.+++.|||||+|...+.|+||+||+||.|.+|.++
T Consensus 318 Ittdl~a---------------------------------rgidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~i 364 (397)
T KOG0327|consen 318 ITTDLLA---------------------------------RGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAI 364 (397)
T ss_pred eeccccc---------------------------------cccchhhcceeeeeccccchhhhhhhcccccccCCCceee
Confidence 9999965 9999999999999999999999999999999999999999
Q ss_pred EEeCCchhhHHHHHHHH
Q 007402 418 SLVSPDEMKIFEEIKSF 434 (605)
Q Consensus 418 ~~v~~~e~~~~~~~~~~ 434 (605)
+|+...+...+..++++
T Consensus 365 n~v~~~d~~~lk~ie~~ 381 (397)
T KOG0327|consen 365 NFVTEEDVRDLKDIEKF 381 (397)
T ss_pred eeehHhhHHHHHhHHHh
Confidence 99998766444444433
No 31
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.1e-57 Score=501.44 Aligned_cols=372 Identities=33% Similarity=0.514 Sum_probs=340.3
Q ss_pred hhhcccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCC
Q 007402 21 EAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAP 100 (605)
Q Consensus 21 ~~~~~~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~ 100 (605)
-+.++++|.+.||+..++..++++||..|||||.+|||.++.|+|||..|.||||||++|++|++..+..........||
T Consensus 360 ~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGP 439 (997)
T KOG0334|consen 360 CPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGP 439 (997)
T ss_pred CCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCc
Confidence 35568999999999999999999999999999999999999999999999999999999999999777665554456699
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCC
Q 007402 101 AALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD 180 (605)
Q Consensus 101 ~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~ 180 (605)
-+||++|||||+.|+++++..|+... +++++.++|+.....+...+..+.+|+||||++.++.+-.+.- ....+.
T Consensus 440 i~li~aPtrela~QI~r~~~kf~k~l----~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~g-rvtnlr 514 (997)
T KOG0334|consen 440 IALILAPTRELAMQIHREVRKFLKLL----GIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSG-RVTNLR 514 (997)
T ss_pred eEEEEcCCHHHHHHHHHHHHHHHhhc----CceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCC-cccccc
Confidence 99999999999999999999998874 8999999999999999999999999999999999998865541 123445
Q ss_pred CceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEE
Q 007402 181 SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF 260 (605)
Q Consensus 181 ~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~ 260 (605)
.+.+||+||||.|++.||++.+..|+..+++.+|++++|||++..++.++...++.|+.+.+.. .......+.|.
T Consensus 515 R~t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~-----~svV~k~V~q~ 589 (997)
T KOG0334|consen 515 RVTYLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGG-----RSVVCKEVTQV 589 (997)
T ss_pred ccceeeechhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEcc-----ceeEeccceEE
Confidence 5569999999999999999999999999999999999999999999999999999999877765 45566789999
Q ss_pred EEEcc-ccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEE
Q 007402 261 WISCS-ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIA 339 (605)
Q Consensus 261 ~~~~~-~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIa 339 (605)
+..|. +.+|+..|..++......+++||||.+.+.|..+..-|...|+.|+.|||+.++..|..+++.|++|.+.+|||
T Consensus 590 v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLva 669 (997)
T KOG0334|consen 590 VRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVA 669 (997)
T ss_pred EEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEe
Confidence 99898 99999999999999888999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCccEEEE
Q 007402 340 TDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSL 419 (605)
Q Consensus 340 Td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~~ 419 (605)
|++++ ||+|++++.+|||||+|.....|+||+|||||+|++|.|++|
T Consensus 670 Tsvva---------------------------------rGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtF 716 (997)
T KOG0334|consen 670 TSVVA---------------------------------RGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTF 716 (997)
T ss_pred hhhhh---------------------------------cccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEE
Confidence 99955 999999999999999999999999999999999999999999
Q ss_pred eCCchhhHHHHHHHHH
Q 007402 420 VSPDEMKIFEEIKSFV 435 (605)
Q Consensus 420 v~~~e~~~~~~~~~~l 435 (605)
+.|.+......+-+.+
T Consensus 717 i~p~q~~~a~dl~~al 732 (997)
T KOG0334|consen 717 ITPDQLKYAGDLCKAL 732 (997)
T ss_pred eChHHhhhHHHHHHHH
Confidence 9997776665555555
No 32
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.7e-58 Score=459.31 Aligned_cols=363 Identities=32% Similarity=0.476 Sum_probs=338.1
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEE
Q 007402 25 EKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALV 104 (605)
Q Consensus 25 ~~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~Li 104 (605)
.-+|.+|||+..+++|+.+-||..|||||++.||++|+|+|++..|.||||||+||+||+++++.... ..+.+++|
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s----~~g~Rali 95 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS----QTGLRALI 95 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc----ccccceee
Confidence 57899999999999999999999999999999999999999999999999999999999999987642 34789999
Q ss_pred EcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceE
Q 007402 105 LVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKI 184 (605)
Q Consensus 105 lvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~ 184 (605)
++||+||+.|+...++.+..+. ++++..+.|+.+.+.+...+.++||||++||+++....-.-. +.++.+.+
T Consensus 96 lsptreLa~qtlkvvkdlgrgt----~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~----l~l~svey 167 (529)
T KOG0337|consen 96 LSPTRELALQTLKVVKDLGRGT----KLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMT----LTLSSVEY 167 (529)
T ss_pred ccCcHHHHHHHHHHHHHhcccc----chhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehhee----ccccceee
Confidence 9999999999999999998766 788888899999999999999999999999999977655432 77899999
Q ss_pred EEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEEEEEc
Q 007402 185 LVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264 (605)
Q Consensus 185 lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~ 264 (605)
||+||||.++.+||.+.+..++..+|...|+++||||+|.++....+..+.+|+.+.++- +......++..+..+
T Consensus 168 VVfdEadrlfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldv-----etkise~lk~~f~~~ 242 (529)
T KOG0337|consen 168 VVFDEADRLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDV-----ETKISELLKVRFFRV 242 (529)
T ss_pred eeehhhhHHHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeeh-----hhhcchhhhhheeee
Confidence 999999999999999999999999999999999999999999999999999999999876 556667888999999
Q ss_pred cccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCC
Q 007402 265 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ 344 (605)
Q Consensus 265 ~~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~ 344 (605)
...+|...|+.++........++|||.+...++.+...|..+|+.+..+.|.|.+.-|..-+..|+.+...+||.||+++
T Consensus 243 ~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaa 322 (529)
T KOG0337|consen 243 RKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAA 322 (529)
T ss_pred ccHHHHHHHHHHHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhh
Confidence 99999999999988766566899999999999999999999999999999999999999999999999999999999986
Q ss_pred cccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCccEEEEeCCch
Q 007402 345 TKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE 424 (605)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~~v~~~e 424 (605)
||+|+|-.+.|||||+|.+..-|+||+||++|+|+.|.+++||.+.+
T Consensus 323 ---------------------------------RG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~ 369 (529)
T KOG0337|consen 323 ---------------------------------RGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTD 369 (529)
T ss_pred ---------------------------------ccCCCccccccccccCCCCCceEEEEecchhhccccceEEEEEeccc
Confidence 99999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhh
Q 007402 425 MKIFEEIKSFVGD 437 (605)
Q Consensus 425 ~~~~~~~~~~l~~ 437 (605)
..++-.+..++.+
T Consensus 370 ~~yl~DL~lflgr 382 (529)
T KOG0337|consen 370 DPYLLDLQLFLGR 382 (529)
T ss_pred chhhhhhhhhcCC
Confidence 9888888877765
No 33
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-55 Score=451.76 Aligned_cols=364 Identities=32% Similarity=0.455 Sum_probs=305.8
Q ss_pred cCcccCCCCHHH----------HHHHHHCCCCCChHHHHHHHHHHhC---------CCcEEEEcCCCchHHHHHHHHHHH
Q 007402 26 KSFEELGLDLRL----------VHALNKKGIQKPTLIQQASIPLILE---------GKDVVARAKTGSGKTFAYLLPLLH 86 (605)
Q Consensus 26 ~~f~~~~L~~~l----------~~al~~~g~~~pt~iQ~~aIp~~l~---------gkdvlv~a~TGsGKT~a~~lpil~ 86 (605)
.-|+.+++++.+ .++|..+++++..|+|..++|++|. ++||.+.||||||||+||.|||+|
T Consensus 127 q~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ 206 (620)
T KOG0350|consen 127 QIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQ 206 (620)
T ss_pred eeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHH
Confidence 446677766554 4559999999999999999999964 489999999999999999999999
Q ss_pred HHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcC-CC----cEEEECC
Q 007402 87 RLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAG-PP----DIVIATP 161 (605)
Q Consensus 87 ~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~-~~----dIvV~TP 161 (605)
.+..+. .+..||||||||++|+.||++.|..+.... ++.|+.+.|..+.+.....|.+ .+ ||+|+||
T Consensus 207 ~L~~R~----v~~LRavVivPtr~L~~QV~~~f~~~~~~t----gL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTP 278 (620)
T KOG0350|consen 207 LLSSRP----VKRLRAVVIVPTRELALQVYDTFKRLNSGT----GLAVCSLSGQNSLEDEARQLASDPPECRIDILVATP 278 (620)
T ss_pred HHccCC----ccceEEEEEeeHHHHHHHHHHHHHHhccCC----ceEEEecccccchHHHHHHHhcCCCccccceEEcCc
Confidence 887642 335899999999999999999999887544 7889999998888776666654 45 8999999
Q ss_pred chHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCcHHHHHHHHhhCC-------------------------------
Q 007402 162 GCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP------------------------------- 210 (605)
Q Consensus 162 ~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~~~l~~i~~~lp------------------------------- 210 (605)
+||.+||.+. ..+.+++|+++||||||+|++..|.+.+..+..++.
T Consensus 279 GRLVDHl~~~---k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~ 355 (620)
T KOG0350|consen 279 GRLVDHLNNT---KSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLG 355 (620)
T ss_pred hHHHHhccCC---CCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcC
Confidence 9999999864 468999999999999999998777766666555432
Q ss_pred ---CCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEEEEEccccchHHHHHHHHHhhcCCCeEE
Q 007402 211 ---RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKAL 287 (605)
Q Consensus 211 ---~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~~~~~k~~~l~~llk~~~~~~k~I 287 (605)
+..+.+++|||++.+-..+..+-++.|....+.... ......+..+.++++.++...|-..+|+++.... -.++|
T Consensus 356 ~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~-~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k-~~r~l 433 (620)
T KOG0350|consen 356 KLYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPL-IGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNK-LNRTL 433 (620)
T ss_pred CcCchhHhhhcchhhhcChHHHhhhhcCCCceEEeeccc-ceeeecChhhhhceeecccccchHhHHHHHHHhh-cceEE
Confidence 123578899999999999999999999665543210 1134567789999999999999999999998754 56899
Q ss_pred EEecchhHHHHHHHHHH-H---cCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCccccccc
Q 007402 288 IFTNTIDMAFRLKLFLE-K---FGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSK 363 (605)
Q Consensus 288 IFv~s~~~~~~L~~~L~-~---~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~ 363 (605)
+|+++.+.+.+|...|+ . ..+.+..+.|.+....|...++.|++|.+++|||||..
T Consensus 434 cf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~l-------------------- 493 (620)
T KOG0350|consen 434 CFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDAL-------------------- 493 (620)
T ss_pred EEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhh--------------------
Confidence 99999999999988887 3 34566668999999999999999999999999999994
Q ss_pred CCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCccEEEEeCCchhhHHHHHHHHH
Q 007402 364 KHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435 (605)
Q Consensus 364 ~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~~v~~~e~~~~~~~~~~l 435 (605)
+||||+.+|++|||||+|.+..+|+||+|||||||+.|.|++++...+...+.++.+..
T Consensus 494 -------------aRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~~ 552 (620)
T KOG0350|consen 494 -------------ARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKKT 552 (620)
T ss_pred -------------hcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeeccccchHHHHHHHHh
Confidence 59999999999999999999999999999999999999999999998887666555443
No 34
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=1.1e-52 Score=478.90 Aligned_cols=354 Identities=19% Similarity=0.223 Sum_probs=276.4
Q ss_pred cCcccC--CCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEE
Q 007402 26 KSFEEL--GLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAAL 103 (605)
Q Consensus 26 ~~f~~~--~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~L 103 (605)
..|..+ .|++.|.++|.++||.+||++|.+|||.+++|+|+++.+|||||||+||++|+++.+... .+.++|
T Consensus 12 a~~~~~~~~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~------~~~~aL 85 (742)
T TIGR03817 12 GRTAPWPAWAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD------PRATAL 85 (742)
T ss_pred cccCCCCCcCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC------CCcEEE
Confidence 344444 389999999999999999999999999999999999999999999999999999998762 367899
Q ss_pred EEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCce
Q 007402 104 VLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLK 183 (605)
Q Consensus 104 ilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~ 183 (605)
||+||+||+.|+...+..+. . . ++++..+.|+.+.. ++..+...++|||+||+++...+..........+++++
T Consensus 86 ~l~PtraLa~q~~~~l~~l~-~--~--~i~v~~~~Gdt~~~-~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~ 159 (742)
T TIGR03817 86 YLAPTKALAADQLRAVRELT-L--R--GVRPATYDGDTPTE-ERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLR 159 (742)
T ss_pred EEcChHHHHHHHHHHHHHhc-c--C--CeEEEEEeCCCCHH-HHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCC
Confidence 99999999999999999885 1 1 68888888888754 45566778999999999987544322111123478999
Q ss_pred EEEEeCcchhccCCcHHHHHHH-------HhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCC
Q 007402 184 ILVLDEADLLLSYGYEDDLKAL-------SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN 256 (605)
Q Consensus 184 ~lViDEad~i~~~g~~~~l~~i-------~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~ 256 (605)
+|||||||.+.+ .|...+..+ ....+..+|++++|||+++..+ +...++.+|..+ +.. +......
T Consensus 160 ~vViDEah~~~g-~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~-i~~-----~~~~~~~ 231 (742)
T TIGR03817 160 YVVIDECHSYRG-VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVA-VTE-----DGSPRGA 231 (742)
T ss_pred EEEEeChhhccC-ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEE-ECC-----CCCCcCc
Confidence 999999999876 355554443 3345677899999999998876 455566677554 222 1111111
Q ss_pred cEEEEEEcc----------------ccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHc--------CCcEEE
Q 007402 257 VQQFWISCS----------------ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKF--------GIKSAI 312 (605)
Q Consensus 257 l~q~~~~~~----------------~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~--------gi~~~~ 312 (605)
....++... ..++..++..+++. ..++||||+|+..|+.++..|... +..+..
T Consensus 232 ~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~~---~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~ 308 (742)
T TIGR03817 232 RTVALWEPPLTELTGENGAPVRRSASAEAADLLADLVAE---GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAA 308 (742)
T ss_pred eEEEEecCCccccccccccccccchHHHHHHHHHHHHHC---CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhh
Confidence 222211111 12345556666553 579999999999999999988764 667889
Q ss_pred EcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeC
Q 007402 313 LNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFE 392 (605)
Q Consensus 313 l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd 392 (605)
+||++++.+|..++++|.+|++++|||||.++ ||||+++|++|||||
T Consensus 309 ~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~le---------------------------------rGIDI~~vd~VI~~~ 355 (742)
T TIGR03817 309 YRAGYLPEDRRELERALRDGELLGVATTNALE---------------------------------LGVDISGLDAVVIAG 355 (742)
T ss_pred eecCCCHHHHHHHHHHHHcCCceEEEECchHh---------------------------------ccCCcccccEEEEeC
Confidence 99999999999999999999999999999977 899999999999999
Q ss_pred CCCCchhHHHhhcccccCCCCccEEEEeCC--chhhHHHHHHHHH
Q 007402 393 MPQNAAGYVHRIGRTGRAYNTGASVSLVSP--DEMKIFEEIKSFV 435 (605)
Q Consensus 393 ~P~s~~~yiqRiGRtgR~g~~G~ai~~v~~--~e~~~~~~~~~~l 435 (605)
+|.+..+|+||+|||||+|+.|.+++|+.. .|...+...++++
T Consensus 356 ~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~ 400 (742)
T TIGR03817 356 FPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALF 400 (742)
T ss_pred CCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHh
Confidence 999999999999999999999999999874 3443333333333
No 35
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-53 Score=446.96 Aligned_cols=373 Identities=32% Similarity=0.423 Sum_probs=315.9
Q ss_pred hhcccCccc----CCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCC
Q 007402 22 AEEEKSFEE----LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSK 97 (605)
Q Consensus 22 ~~~~~~f~~----~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~ 97 (605)
+.+..+|.+ +..++++++.+..+||..|||+|..|||.+++++|++++||||||||+||++|+++.+.........
T Consensus 128 ~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~ 207 (593)
T KOG0344|consen 128 PPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHK 207 (593)
T ss_pred CCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCc
Confidence 445667776 5689999999999999999999999999999999999999999999999999999999876655556
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCH-HHHHHHHcCCCcEEEECCchHHHHHhcCCCCCc
Q 007402 98 LAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPA-SDLRAALAGPPDIVIATPGCMPKCLSTGVLQSK 176 (605)
Q Consensus 98 ~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~-~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~ 176 (605)
.|.+++|+.||+|||.|++.++..+...-+ ..+++..+...... ..........++|+|+||-++..++..+. ..
T Consensus 208 ~gl~a~Il~ptreLa~Qi~re~~k~~~~~~--t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~--~~ 283 (593)
T KOG0344|consen 208 VGLRALILSPTRELAAQIYREMRKYSIDEG--TSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGK--LN 283 (593)
T ss_pred cceEEEEecchHHHHHHHHHHHHhcCCCCC--CchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCC--cc
Confidence 789999999999999999999988862111 13333333332111 12223334568999999999999998875 23
Q ss_pred ccCCCceEEEEeCcchhccC-CcHHHHHHHHhhCCC-CceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccC
Q 007402 177 SFSDSLKILVLDEADLLLSY-GYEDDLKALSAVIPR-GCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIP 254 (605)
Q Consensus 177 ~~l~~l~~lViDEad~i~~~-g~~~~l~~i~~~lp~-~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~ 254 (605)
+.++.+.++|+||||+++.. +|..++..|+..+.. ...+-+||||++..|+++....+.++..+.+.. .....
T Consensus 284 idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~-----~~sa~ 358 (593)
T KOG0344|consen 284 IDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGL-----RNSAN 358 (593)
T ss_pred chhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEec-----chhHh
Confidence 78899999999999999999 899999999887753 566778999999999999999999998888765 33334
Q ss_pred CCcEEEEEEcc-ccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHH-HHcCCcEEEEcCCCCHHHHHHHHHHHHcC
Q 007402 255 KNVQQFWISCS-ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFL-EKFGIKSAILNAELPQNSRLHILEEFNAG 332 (605)
Q Consensus 255 ~~l~q~~~~~~-~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L-~~~gi~~~~l~~~l~~~~R~~i~~~F~~g 332 (605)
..+.|..+.|. +..|++.+..++... ...++|||+.+.++|..|...| .-.+|++.++||+.++..|..++++|+.|
T Consensus 359 ~~V~QelvF~gse~~K~lA~rq~v~~g-~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g 437 (593)
T KOG0344|consen 359 ETVDQELVFCGSEKGKLLALRQLVASG-FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIG 437 (593)
T ss_pred hhhhhhheeeecchhHHHHHHHHHhcc-CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhcc
Confidence 56778777775 677899999988876 4789999999999999999999 55689999999999999999999999999
Q ss_pred CCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCC
Q 007402 333 LFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYN 412 (605)
Q Consensus 333 ~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~ 412 (605)
++.||||||+++ |||||.+|++|||||+|.+..+|+|||||+||+|+
T Consensus 438 ~IwvLicTdll~---------------------------------RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~ 484 (593)
T KOG0344|consen 438 KIWVLICTDLLA---------------------------------RGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGR 484 (593)
T ss_pred CeeEEEehhhhh---------------------------------ccccccCcceEEecCCCchhHHHHHHhhccCCCCC
Confidence 999999999965 99999999999999999999999999999999999
Q ss_pred CccEEEEeCCchhhHHHHHHHHHhh
Q 007402 413 TGASVSLVSPDEMKIFEEIKSFVGD 437 (605)
Q Consensus 413 ~G~ai~~v~~~e~~~~~~~~~~l~~ 437 (605)
.|.|++|++..+.+.+..+.+.+..
T Consensus 485 ~g~Aitfytd~d~~~ir~iae~~~~ 509 (593)
T KOG0344|consen 485 SGKAITFYTDQDMPRIRSIAEVMEQ 509 (593)
T ss_pred CcceEEEeccccchhhhhHHHHHHH
Confidence 9999999999888777666665543
No 36
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=1.1e-52 Score=439.67 Aligned_cols=352 Identities=27% Similarity=0.413 Sum_probs=314.6
Q ss_pred hhcccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCe
Q 007402 22 AEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPA 101 (605)
Q Consensus 22 ~~~~~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~ 101 (605)
.....+|+++.|...++..|.+.||..||+||..|||+++.+-|+||+|..|+|||++|.+.+++.+..+ ...+.
T Consensus 21 ~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~-----~~~~q 95 (980)
T KOG4284|consen 21 SNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSR-----SSHIQ 95 (980)
T ss_pred cCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcc-----cCcce
Confidence 3446789999999999999999999999999999999999999999999999999999999999988663 34678
Q ss_pred EEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCC
Q 007402 102 ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS 181 (605)
Q Consensus 102 ~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~ 181 (605)
++|++||||++.|+.+.+..++..+. +.+|..+.||+........+ ..++|+|+||+|+..++..+. ...++
T Consensus 96 ~~Iv~PTREiaVQI~~tv~~v~~sf~---g~~csvfIGGT~~~~d~~rl-k~~rIvIGtPGRi~qL~el~~----~n~s~ 167 (980)
T KOG4284|consen 96 KVIVTPTREIAVQIKETVRKVAPSFT---GARCSVFIGGTAHKLDLIRL-KQTRIVIGTPGRIAQLVELGA----MNMSH 167 (980)
T ss_pred eEEEecchhhhhHHHHHHHHhccccc---CcceEEEecCchhhhhhhhh-hhceEEecCchHHHHHHHhcC----CCccc
Confidence 99999999999999999998876554 68899999998766544444 467899999999999999885 77899
Q ss_pred ceEEEEeCcchhcc-CCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEE
Q 007402 182 LKILVLDEADLLLS-YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF 260 (605)
Q Consensus 182 l~~lViDEad~i~~-~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~ 260 (605)
++++|+||||.+++ ..|.+++..|+..+|..+|++.+|||.+..++.+...+|++|..+.+.. .....-.+.||
T Consensus 168 vrlfVLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~-----~d~~L~GikQy 242 (980)
T KOG4284|consen 168 VRLFVLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNA-----DDVQLFGIKQY 242 (980)
T ss_pred eeEEEeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeeccc-----CCceeechhhe
Confidence 99999999999998 4599999999999999999999999999999999999999999999887 44555578898
Q ss_pred EEEccc--------cchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcC
Q 007402 261 WISCSE--------RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAG 332 (605)
Q Consensus 261 ~~~~~~--------~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g 332 (605)
++.... +.|+..|-.+++. +.-...||||+...+|..++..|...|+.|.++.|.|.+++|.++++.++.-
T Consensus 243 v~~~~s~nnsveemrlklq~L~~vf~~-ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f 321 (980)
T KOG4284|consen 243 VVAKCSPNNSVEEMRLKLQKLTHVFKS-IPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAF 321 (980)
T ss_pred eeeccCCcchHHHHHHHHHHHHHHHhh-CchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhc
Confidence 876543 2366666666663 3456899999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCC
Q 007402 333 LFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYN 412 (605)
Q Consensus 333 ~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~ 412 (605)
.++|||+||.. +||||-++|++|||.|.|.+..+|.|||||+||+|.
T Consensus 322 ~~rILVsTDLt---------------------------------aRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~ 368 (980)
T KOG4284|consen 322 RVRILVSTDLT---------------------------------ARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGA 368 (980)
T ss_pred eEEEEEecchh---------------------------------hccCCccccceEEecCCCcchHHHHHHhhhcccccc
Confidence 99999999995 499999999999999999999999999999999999
Q ss_pred CccEEEEeCCchh
Q 007402 413 TGASVSLVSPDEM 425 (605)
Q Consensus 413 ~G~ai~~v~~~e~ 425 (605)
.|.+++|+.....
T Consensus 369 ~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 369 HGAAVTLLEDERE 381 (980)
T ss_pred cceeEEEeccchh
Confidence 9999999976544
No 37
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=3.5e-49 Score=447.80 Aligned_cols=339 Identities=21% Similarity=0.264 Sum_probs=264.8
Q ss_pred ccCcc--cCCCCHHHHHHHHH-CCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCe
Q 007402 25 EKSFE--ELGLDLRLVHALNK-KGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPA 101 (605)
Q Consensus 25 ~~~f~--~~~L~~~l~~al~~-~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~ 101 (605)
...|. .|+++..+...+.. +||..++|+|.++|+.++.|+|+|+.||||+|||+||++|++.. +..
T Consensus 434 ~~~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~-----------~Gi 502 (1195)
T PLN03137 434 DKKWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC-----------PGI 502 (1195)
T ss_pred CccccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc-----------CCc
Confidence 34566 57788888777776 79999999999999999999999999999999999999999853 346
Q ss_pred EEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHc------CCCcEEEECCchHHH--HHhcCCC
Q 007402 102 ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALA------GPPDIVIATPGCMPK--CLSTGVL 173 (605)
Q Consensus 102 ~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~------~~~dIvV~TP~~l~~--~l~~~~~ 173 (605)
+|||+|+++|+.++...+... ++.+..+.++.+...+...+. ..++|||+||++|.. .+....
T Consensus 503 TLVISPLiSLmqDQV~~L~~~--------GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L- 573 (1195)
T PLN03137 503 TLVISPLVSLIQDQIMNLLQA--------NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHL- 573 (1195)
T ss_pred EEEEeCHHHHHHHHHHHHHhC--------CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHH-
Confidence 999999999998655554432 688899999988776655443 578999999999853 122110
Q ss_pred CCcccCCCceEEEEeCcchhccCC--cHHHHHHH---HhhCCCCceEEEEeeecChhHHHHHH--HhcCCCeEEEcCCcc
Q 007402 174 QSKSFSDSLKILVLDEADLLLSYG--YEDDLKAL---SAVIPRGCQCLLMSATSSSDVDKLKK--LILHNPYILTLPEVG 246 (605)
Q Consensus 174 ~~~~~l~~l~~lViDEad~i~~~g--~~~~l~~i---~~~lp~~~q~il~SATl~~~v~~l~~--~~l~~p~~i~l~~~~ 246 (605)
........+.+|||||||+++.|| |++++..+ ...+ +..|++++|||++..+..... +.+.++.++.-
T Consensus 574 ~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~f-p~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~---- 648 (1195)
T PLN03137 574 ENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKF-PNIPVLALTATATASVKEDVVQALGLVNCVVFRQ---- 648 (1195)
T ss_pred HhhhhccccceeccCcchhhhhcccchHHHHHHHHHHHHhC-CCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeec----
Confidence 001123458899999999999998 67776653 3344 468899999999998865333 33445554432
Q ss_pred CccccccCCCcEEEEEEccccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHH
Q 007402 247 DVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 326 (605)
Q Consensus 247 ~~~~~~~~~~l~q~~~~~~~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~ 326 (605)
.....++...++. ........+..+++.......+||||+++..|+.++.+|...|+.+..+||+|++.+|..++
T Consensus 649 ----Sf~RpNL~y~Vv~-k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vq 723 (1195)
T PLN03137 649 ----SFNRPNLWYSVVP-KTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQ 723 (1195)
T ss_pred ----ccCccceEEEEec-cchhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHH
Confidence 1222344322222 22222344555555444467899999999999999999999999999999999999999999
Q ss_pred HHHHcCCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcc
Q 007402 327 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGR 406 (605)
Q Consensus 327 ~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGR 406 (605)
+.|..|.++|||||+.++ +|||+|+|++|||||+|.|+++|+||+||
T Consensus 724 e~F~~Gei~VLVATdAFG---------------------------------MGIDkPDVR~VIHydlPkSiEsYyQriGR 770 (1195)
T PLN03137 724 KQWSKDEINIICATVAFG---------------------------------MGINKPDVRFVIHHSLPKSIEGYHQECGR 770 (1195)
T ss_pred HHHhcCCCcEEEEechhh---------------------------------cCCCccCCcEEEEcCCCCCHHHHHhhhcc
Confidence 999999999999999865 79999999999999999999999999999
Q ss_pred cccCCCCccEEEEeCCchhh
Q 007402 407 TGRAYNTGASVSLVSPDEMK 426 (605)
Q Consensus 407 tgR~g~~G~ai~~v~~~e~~ 426 (605)
|||.|..|.|++|+++.|..
T Consensus 771 AGRDG~~g~cILlys~~D~~ 790 (1195)
T PLN03137 771 AGRDGQRSSCVLYYSYSDYI 790 (1195)
T ss_pred cCCCCCCceEEEEecHHHHH
Confidence 99999999999999886653
No 38
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1e-48 Score=428.88 Aligned_cols=321 Identities=22% Similarity=0.296 Sum_probs=253.3
Q ss_pred HCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHH
Q 007402 43 KKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMAL 122 (605)
Q Consensus 43 ~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l 122 (605)
.+||..|+|+|.++|+.+++|+|+++.||||||||++|++|++.. +..+||++||++|+.|++..+..+
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~-----------~~~~lVi~P~~~L~~dq~~~l~~~ 74 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS-----------DGITLVISPLISLMEDQVLQLKAS 74 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc-----------CCcEEEEecHHHHHHHHHHHHHHc
Confidence 369999999999999999999999999999999999999998852 346999999999999998888654
Q ss_pred HHHhcCCcceEEEEEeCCCCHHHHHH----HHcCCCcEEEECCchHHHHHhcCCCCCcc-cCCCceEEEEeCcchhccCC
Q 007402 123 IELCKGQVQLKVVQLTSSMPASDLRA----ALAGPPDIVIATPGCMPKCLSTGVLQSKS-FSDSLKILVLDEADLLLSYG 197 (605)
Q Consensus 123 ~~~~~~~~~i~v~~l~~~~~~~~~~~----~l~~~~dIvV~TP~~l~~~l~~~~~~~~~-~l~~l~~lViDEad~i~~~g 197 (605)
++.+..+.++.....+.. .....++|+++||+++......- ..+ ...++++|||||||++++||
T Consensus 75 --------gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~---~~l~~~~~i~~iViDEaH~i~~~g 143 (470)
T TIGR00614 75 --------GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLL---QTLEERKGITLIAVDEAHCISQWG 143 (470)
T ss_pred --------CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHH---HHHHhcCCcCEEEEeCCcccCccc
Confidence 677888888877654332 23456899999999975422100 012 45779999999999999987
Q ss_pred --cHHHHHHH---HhhCCCCceEEEEeeecChhHHHHH--HHhcCCCeEEEcCCccCccccccCCCcEEEEEEccccchH
Q 007402 198 --YEDDLKAL---SAVIPRGCQCLLMSATSSSDVDKLK--KLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKL 270 (605)
Q Consensus 198 --~~~~l~~i---~~~lp~~~q~il~SATl~~~v~~l~--~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~~~~~k~ 270 (605)
|..++..+ ...+| ..|++++|||+++.+.... .+.+.+|.++.... ...++...+. .......
T Consensus 144 ~~fr~~~~~l~~l~~~~~-~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~--------~r~nl~~~v~-~~~~~~~ 213 (470)
T TIGR00614 144 HDFRPDYKALGSLKQKFP-NVPIMALTATASPSVREDILRQLNLKNPQIFCTSF--------DRPNLYYEVR-RKTPKIL 213 (470)
T ss_pred cccHHHHHHHHHHHHHcC-CCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCC--------CCCCcEEEEE-eCCccHH
Confidence 55665544 44454 6889999999998874432 33356676654322 1223322222 2222344
Q ss_pred HHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCcccccc
Q 007402 271 LYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQ 350 (605)
Q Consensus 271 ~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~ 350 (605)
..+..++........+||||++++.|+.++..|...|+.+..+||+|++.+|..+++.|..|.++|||||+.++
T Consensus 214 ~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~------ 287 (470)
T TIGR00614 214 EDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFG------ 287 (470)
T ss_pred HHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhh------
Confidence 44555554333345669999999999999999999999999999999999999999999999999999999865
Q ss_pred cCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCccEEEEeCCchhhHH
Q 007402 351 SDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF 428 (605)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~~v~~~e~~~~ 428 (605)
+|||+|+|++|||||+|.|+++|+||+||+||.|..|.|++|+++.+...+
T Consensus 288 ---------------------------~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~ 338 (470)
T TIGR00614 288 ---------------------------MGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPADINRL 338 (470)
T ss_pred ---------------------------ccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEechhHHHHH
Confidence 899999999999999999999999999999999999999999999776433
No 39
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-49 Score=376.05 Aligned_cols=335 Identities=25% Similarity=0.404 Sum_probs=292.0
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEE
Q 007402 25 EKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALV 104 (605)
Q Consensus 25 ~~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~Li 104 (605)
...|.+|-|.|.|++|+-+.||++|+.+|.++||.+.-|-|++++|..|.|||++|++..+|.+-- ......+|+
T Consensus 41 ssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiep-----v~g~vsvlv 115 (387)
T KOG0329|consen 41 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEP-----VDGQVSVLV 115 (387)
T ss_pred ccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCC-----CCCeEEEEE
Confidence 467999999999999999999999999999999999999999999999999999999999998743 233567999
Q ss_pred EcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceE
Q 007402 105 LVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKI 184 (605)
Q Consensus 105 lvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~ 184 (605)
+|.|||||-|+..+...+.+|++ ++++..++|+.+.......+.+-|+|||+||++++.+.++.. +.++++++
T Consensus 116 mchtrelafqi~~ey~rfskymP---~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~----l~lk~vkh 188 (387)
T KOG0329|consen 116 MCHTRELAFQISKEYERFSKYMP---SVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRS----LNLKNVKH 188 (387)
T ss_pred EeccHHHHHHHHHHHHHHHhhCC---CceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhcc----Cchhhcce
Confidence 99999999999999999999987 599999999999988888899999999999999999999875 88999999
Q ss_pred EEEeCcchhccC-CcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEEEEE
Q 007402 185 LVLDEADLLLSY-GYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWIS 263 (605)
Q Consensus 185 lViDEad~i~~~-g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~ 263 (605)
+|+||||.|+.+ ..+.+++.|.+..|...|++.||||++.++....+.++.+|..+.+++. .......++|+|+.
T Consensus 189 FvlDEcdkmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE----~KLtLHGLqQ~Yvk 264 (387)
T KOG0329|consen 189 FVLDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDE----AKLTLHGLQQYYVK 264 (387)
T ss_pred eehhhHHHHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccch----hhhhhhhHHHHHHh
Confidence 999999998865 5788999999999999999999999999999999999999999887662 23556689999999
Q ss_pred ccccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 007402 264 CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDT 343 (605)
Q Consensus 264 ~~~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~ 343 (605)
..+.+|...++.++.. +.-..++||+.++.+.. |. -+ ||||+..
T Consensus 265 Lke~eKNrkl~dLLd~-LeFNQVvIFvKsv~Rl~-------------------------------f~---kr-~vat~lf 308 (387)
T KOG0329|consen 265 LKENEKNRKLNDLLDV-LEFNQVVIFVKSVQRLS-------------------------------FQ---KR-LVATDLF 308 (387)
T ss_pred hhhhhhhhhhhhhhhh-hhhcceeEeeehhhhhh-------------------------------hh---hh-hHHhhhh
Confidence 9999998888888764 34678999999987710 21 13 8899985
Q ss_pred CcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCccEEEEeCCc
Q 007402 344 QTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPD 423 (605)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~~v~~~ 423 (605)
. ||+|+..|+.|+|||+|.++.+|+||+||+||.|.+|.||+|++..
T Consensus 309 g---------------------------------rgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e 355 (387)
T KOG0329|consen 309 G---------------------------------RGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDE 355 (387)
T ss_pred c---------------------------------cccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcch
Confidence 5 9999999999999999999999999999999999999999999875
Q ss_pred hhhHHHHHHHHHhhhhhhccCCCCCcc
Q 007402 424 EMKIFEEIKSFVGDDENEDSNIIAPFP 450 (605)
Q Consensus 424 e~~~~~~~~~~l~~~~~~~~~~i~~~~ 450 (605)
+ +.++|..+.......++.++
T Consensus 356 ~------da~iLn~vqdRf~v~i~eLp 376 (387)
T KOG0329|consen 356 N------DAKILNPVQDRFEVNIKELP 376 (387)
T ss_pred h------hHHHhchhhHhhhccHhhcC
Confidence 3 34555555554444444444
No 40
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=8.6e-47 Score=424.43 Aligned_cols=329 Identities=22% Similarity=0.290 Sum_probs=257.8
Q ss_pred CCCCHHHHHHHHH-CCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcH
Q 007402 31 LGLDLRLVHALNK-KGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTR 109 (605)
Q Consensus 31 ~~L~~~l~~al~~-~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtr 109 (605)
+++++...+.|++ +||..|+|+|+++|+.+++|+|+++.+|||+|||++|++|++.. ...+||++|++
T Consensus 7 ~~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~-----------~g~tlVisPl~ 75 (607)
T PRK11057 7 LNLESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL-----------DGLTLVVSPLI 75 (607)
T ss_pred CCchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc-----------CCCEEEEecHH
Confidence 3445555555655 69999999999999999999999999999999999999999853 23599999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHH----HHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEE
Q 007402 110 ELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRA----ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKIL 185 (605)
Q Consensus 110 eLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~----~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~l 185 (605)
+|+.|+.+.+..+ ++.+..+.++.+...... ...+.++++++||+++........ +...++++|
T Consensus 76 sL~~dqv~~l~~~--------gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~----l~~~~l~~i 143 (607)
T PRK11057 76 SLMKDQVDQLLAN--------GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEH----LAHWNPALL 143 (607)
T ss_pred HHHHHHHHHHHHc--------CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHH----HhhCCCCEE
Confidence 9999999888754 567777777776654433 234568999999999874222111 334578999
Q ss_pred EEeCcchhccCC--cHHHHHH---HHhhCCCCceEEEEeeecChhHHH--HHHHhcCCCeEEEcCCccCccccccCCCcE
Q 007402 186 VLDEADLLLSYG--YEDDLKA---LSAVIPRGCQCLLMSATSSSDVDK--LKKLILHNPYILTLPEVGDVKDEVIPKNVQ 258 (605)
Q Consensus 186 ViDEad~i~~~g--~~~~l~~---i~~~lp~~~q~il~SATl~~~v~~--l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~ 258 (605)
||||||++++|| |..++.. +...+| ..|++++|||+++.+.. +..+.+.+|.+..... ...++.
T Consensus 144 VIDEaH~i~~~G~~fr~~y~~L~~l~~~~p-~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~--------~r~nl~ 214 (607)
T PRK11057 144 AVDEAHCISQWGHDFRPEYAALGQLRQRFP-TLPFMALTATADDTTRQDIVRLLGLNDPLIQISSF--------DRPNIR 214 (607)
T ss_pred EEeCccccccccCcccHHHHHHHHHHHhCC-CCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCC--------CCCcce
Confidence 999999999987 5555444 444554 68899999999988743 2333456666543211 122332
Q ss_pred EEEEEccccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEE
Q 007402 259 QFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLI 338 (605)
Q Consensus 259 q~~~~~~~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLI 338 (605)
|..+........+..++.. ....++||||++++.|+.++..|...|+.+..+||+|+..+|..+++.|..|.++|||
T Consensus 215 --~~v~~~~~~~~~l~~~l~~-~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLV 291 (607)
T PRK11057 215 --YTLVEKFKPLDQLMRYVQE-QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVV 291 (607)
T ss_pred --eeeeeccchHHHHHHHHHh-cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEE
Confidence 2222333344445555543 3367899999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCccEEE
Q 007402 339 ATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVS 418 (605)
Q Consensus 339 aTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~ 418 (605)
||+.++ +|||+|+|++|||||+|.|.++|+||+|||||.|.+|.|++
T Consensus 292 aT~a~~---------------------------------~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~il 338 (607)
T PRK11057 292 ATVAFG---------------------------------MGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAML 338 (607)
T ss_pred Eechhh---------------------------------ccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEE
Confidence 999866 79999999999999999999999999999999999999999
Q ss_pred EeCCchhhH
Q 007402 419 LVSPDEMKI 427 (605)
Q Consensus 419 ~v~~~e~~~ 427 (605)
|+++.+...
T Consensus 339 l~~~~d~~~ 347 (607)
T PRK11057 339 FYDPADMAW 347 (607)
T ss_pred EeCHHHHHH
Confidence 999977543
No 41
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.2e-45 Score=429.00 Aligned_cols=345 Identities=21% Similarity=0.269 Sum_probs=255.8
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCC-CCCCCeEEEEcCcHHH
Q 007402 33 LDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPK-SKLAPAALVLVPTREL 111 (605)
Q Consensus 33 L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~-~~~~~~~LilvPtreL 111 (605)
|++.+.+.+.. +|..|||+|.+|||.+++|+|++++||||||||+||++|+++.++...... ...+.++||++||++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 66777666665 899999999999999999999999999999999999999999988642211 1346889999999999
Q ss_pred HHHHHHHHHHHHH----Hh---cCCc-ceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCce
Q 007402 112 CQQVYSEVMALIE----LC---KGQV-QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLK 183 (605)
Q Consensus 112 a~Qv~~~~~~l~~----~~---~~~~-~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~ 183 (605)
+.|+++.+...+. .+ +... ++++...+|+.+...+...+...|+|+|+||+++..++....+ ...+.+++
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~--~~~l~~l~ 174 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKF--REKLRTVK 174 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhH--HHHHhcCC
Confidence 9999987764322 22 2222 6788999999998888888888999999999999888765431 13578899
Q ss_pred EEEEeCcchhccCCcHHH----HHHHHhhCCCCceEEEEeeecChhHHHHHHHhcC-------CCeEEEcCCccCccccc
Q 007402 184 ILVLDEADLLLSYGYEDD----LKALSAVIPRGCQCLLMSATSSSDVDKLKKLILH-------NPYILTLPEVGDVKDEV 252 (605)
Q Consensus 184 ~lViDEad~i~~~g~~~~----l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~-------~p~~i~l~~~~~~~~~~ 252 (605)
+|||||||.+.+..+... +..+....+...|.+++|||+++. +.+...... .+..+. .. .
T Consensus 175 ~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~-~~va~~L~~~~~~~~~r~~~iv-~~-~------ 245 (876)
T PRK13767 175 WVIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPL-EEVAKFLVGYEDDGEPRDCEIV-DA-R------ 245 (876)
T ss_pred EEEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCH-HHHHHHhcCccccCCCCceEEE-cc-C------
Confidence 999999999997655443 444444555678999999999863 333332221 122221 11 0
Q ss_pred cCCCcEEEE-------EEccccchHHHHHHHHHh-hcCCCeEEEEecchhHHHHHHHHHHHc------CCcEEEEcCCCC
Q 007402 253 IPKNVQQFW-------ISCSERDKLLYILTLLKL-ELVQKKALIFTNTIDMAFRLKLFLEKF------GIKSAILNAELP 318 (605)
Q Consensus 253 ~~~~l~q~~-------~~~~~~~k~~~l~~llk~-~~~~~k~IIFv~s~~~~~~L~~~L~~~------gi~~~~l~~~l~ 318 (605)
....+.... ..+........++..+.. -...+++||||||+..|+.++..|... +..+.++||+|+
T Consensus 246 ~~k~~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls 325 (876)
T PRK13767 246 FVKPFDIKVISPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLS 325 (876)
T ss_pred CCccceEEEeccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCC
Confidence 000110000 111111111222222221 122578999999999999999999862 467999999999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCch
Q 007402 319 QNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAA 398 (605)
Q Consensus 319 ~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~ 398 (605)
...|..+++.|++|.+++||||+.++ +|||+++|++||+||.|.++.
T Consensus 326 ~~~R~~ve~~fk~G~i~vLVaTs~Le---------------------------------~GIDip~Vd~VI~~~~P~sv~ 372 (876)
T PRK13767 326 REVRLEVEEKLKRGELKVVVSSTSLE---------------------------------LGIDIGYIDLVVLLGSPKSVS 372 (876)
T ss_pred HHHHHHHHHHHHcCCCeEEEECChHH---------------------------------hcCCCCCCcEEEEeCCCCCHH
Confidence 99999999999999999999999977 899999999999999999999
Q ss_pred hHHHhhcccccC-CCCccEEEEeCC
Q 007402 399 GYVHRIGRTGRA-YNTGASVSLVSP 422 (605)
Q Consensus 399 ~yiqRiGRtgR~-g~~G~ai~~v~~ 422 (605)
+|+||+||+||. |..+.++.++..
T Consensus 373 ~ylQRiGRaGR~~g~~~~g~ii~~~ 397 (876)
T PRK13767 373 RLLQRIGRAGHRLGEVSKGRIIVVD 397 (876)
T ss_pred HHHHhcccCCCCCCCCCcEEEEEcC
Confidence 999999999986 444555555543
No 42
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=3e-45 Score=412.61 Aligned_cols=321 Identities=21% Similarity=0.338 Sum_probs=257.4
Q ss_pred HHHHH-CCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHH
Q 007402 39 HALNK-KGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYS 117 (605)
Q Consensus 39 ~al~~-~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~ 117 (605)
+.|.+ +||.+++|+|.++|+.+++|+|+++.||||+|||++|++|++.. +..++|++|+++|+.|+++
T Consensus 3 ~~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~-----------~g~~lVisPl~sL~~dq~~ 71 (591)
T TIGR01389 3 QVLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL-----------KGLTVVISPLISLMKDQVD 71 (591)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc-----------CCcEEEEcCCHHHHHHHHH
Confidence 34544 79999999999999999999999999999999999999998842 3358999999999999998
Q ss_pred HHHHHHHHhcCCcceEEEEEeCCCCHHHHHH----HHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchh
Q 007402 118 EVMALIELCKGQVQLKVVQLTSSMPASDLRA----ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLL 193 (605)
Q Consensus 118 ~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~----~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i 193 (605)
.+..+ ++.+..++++.+...... ...+.++|+++||+++........ ....++++|||||||++
T Consensus 72 ~l~~~--------gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~----l~~~~l~~iViDEaH~i 139 (591)
T TIGR01389 72 QLRAA--------GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNM----LQRIPIALVAVDEAHCV 139 (591)
T ss_pred HHHHc--------CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHH----HhcCCCCEEEEeCCccc
Confidence 88764 577888888877655433 344678999999999865333222 34567999999999999
Q ss_pred ccCC--cHHHHHHH---HhhCCCCceEEEEeeecChhHHHHHHHhc--CCCeEEEcCCccCccccccCCCcEEEEEEccc
Q 007402 194 LSYG--YEDDLKAL---SAVIPRGCQCLLMSATSSSDVDKLKKLIL--HNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266 (605)
Q Consensus 194 ~~~g--~~~~l~~i---~~~lp~~~q~il~SATl~~~v~~l~~~~l--~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~~~ 266 (605)
..|| |+.++..+ ...+|. .+++++|||++..+.......+ .+|..+.. .....++. +.....
T Consensus 140 ~~~g~~frp~y~~l~~l~~~~~~-~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~--------~~~r~nl~--~~v~~~ 208 (591)
T TIGR01389 140 SQWGHDFRPEYQRLGSLAERFPQ-VPRIALTATADAETRQDIRELLRLADANEFIT--------SFDRPNLR--FSVVKK 208 (591)
T ss_pred ccccCccHHHHHHHHHHHHhCCC-CCEEEEEeCCCHHHHHHHHHHcCCCCCCeEec--------CCCCCCcE--EEEEeC
Confidence 9987 56655554 445554 4599999999988865444333 34444321 11222332 222334
Q ss_pred cchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCcc
Q 007402 267 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTK 346 (605)
Q Consensus 267 ~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~ 346 (605)
.++...+..++.... ..++||||+++..|+.++..|...|+++..+||+|+..+|..+++.|..|.++|||||+..+
T Consensus 209 ~~~~~~l~~~l~~~~-~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~-- 285 (591)
T TIGR01389 209 NNKQKFLLDYLKKHR-GQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFG-- 285 (591)
T ss_pred CCHHHHHHHHHHhcC-CCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhh--
Confidence 456666666666433 67899999999999999999999999999999999999999999999999999999999865
Q ss_pred cccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCccEEEEeCCchhh
Q 007402 347 EKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMK 426 (605)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~~v~~~e~~ 426 (605)
+|||+|+|++||+||+|.|.++|+||+||+||.|..|.|++|+++.+..
T Consensus 286 -------------------------------~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~ 334 (591)
T TIGR01389 286 -------------------------------MGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIA 334 (591)
T ss_pred -------------------------------ccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEEecCHHHHH
Confidence 7999999999999999999999999999999999999999999987764
Q ss_pred H
Q 007402 427 I 427 (605)
Q Consensus 427 ~ 427 (605)
.
T Consensus 335 ~ 335 (591)
T TIGR01389 335 L 335 (591)
T ss_pred H
Confidence 3
No 43
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=8.7e-45 Score=407.13 Aligned_cols=322 Identities=20% Similarity=0.245 Sum_probs=253.4
Q ss_pred CCCCCChHHHHHHHHHHhCCC-cEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEE-EcCcHHHHHHHHHHHHH
Q 007402 44 KGIQKPTLIQQASIPLILEGK-DVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALV-LVPTRELCQQVYSEVMA 121 (605)
Q Consensus 44 ~g~~~pt~iQ~~aIp~~l~gk-dvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~Li-lvPtreLa~Qv~~~~~~ 121 (605)
.||+ |||||.++||.++.|+ ++++.||||||||++|.++++.. .. ....++.|| +||||||+.|+++.+..
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~-----~~~~~~rLv~~vPtReLa~Qi~~~~~~ 84 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EI-----GAKVPRRLVYVVNRRTVVDQVTEEAEK 84 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-cc-----cccccceEEEeCchHHHHHHHHHHHHH
Confidence 4998 9999999999999998 68889999999999776655532 11 123455655 66999999999999999
Q ss_pred HHHHhc-------------------CCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCC--------
Q 007402 122 LIELCK-------------------GQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQ-------- 174 (605)
Q Consensus 122 l~~~~~-------------------~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~-------- 174 (605)
+...+. +...+++..+.|+.+...+...+..+|+|||+|+ +++.++.+.
T Consensus 85 ~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~----D~i~sr~L~~gYg~~~~ 160 (844)
T TIGR02621 85 IGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV----DMIGSRLLFSGYGCGFK 160 (844)
T ss_pred HHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH----HHHcCCccccccccccc
Confidence 988662 1224889999999999999999999999999994 666655421
Q ss_pred ----CcccCCCceEEEEeCcchhccCCcHHHHHHHHhhC--CCC---ceEEEEeeecChhHHHHHHHhcCCCeEEEcCCc
Q 007402 175 ----SKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVI--PRG---CQCLLMSATSSSDVDKLKKLILHNPYILTLPEV 245 (605)
Q Consensus 175 ----~~~~l~~l~~lViDEad~i~~~g~~~~l~~i~~~l--p~~---~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~ 245 (605)
..-.++++++||||||| ++.+|.+++..|++.+ ++. +|+++||||++.++..+...++.+|..+.+..
T Consensus 161 ~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~- 237 (844)
T TIGR02621 161 SRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLK- 237 (844)
T ss_pred cccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeeccc-
Confidence 01137889999999999 6789999999999975 442 79999999999999888888888887665543
Q ss_pred cCccccccCCCcEEEEEEccccchHHHHHHHHH--hhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHH
Q 007402 246 GDVKDEVIPKNVQQFWISCSERDKLLYILTLLK--LELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323 (605)
Q Consensus 246 ~~~~~~~~~~~l~q~~~~~~~~~k~~~l~~llk--~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~ 323 (605)
......++.++ +.+....|...+...+. .....+++||||||++.|..++..|...++ ..+||.|++.+|.
T Consensus 238 ----~~l~a~ki~q~-v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~ 310 (844)
T TIGR02621 238 ----KRLAAKKIVKL-VPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERD 310 (844)
T ss_pred ----ccccccceEEE-EecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHh
Confidence 33344456665 44444445433332221 122357899999999999999999999887 8999999999999
Q ss_pred -----HHHHHHHc----CC-------CcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccE
Q 007402 324 -----HILEEFNA----GL-------FDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 387 (605)
Q Consensus 324 -----~i~~~F~~----g~-------~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~ 387 (605)
.++++|.. |. ..||||||+++ |||||+. ++
T Consensus 311 ~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVae---------------------------------rGLDId~-d~ 356 (844)
T TIGR02621 311 DLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGE---------------------------------VGVNISA-DH 356 (844)
T ss_pred hHHHHHHHHHHhccccccccccccccceEEeccchhh---------------------------------hcccCCc-ce
Confidence 88999987 44 68999999977 8999986 89
Q ss_pred EEEeCCCCCchhHHHhhcccccCCCC-ccEEEEeCC
Q 007402 388 VINFEMPQNAAGYVHRIGRTGRAYNT-GASVSLVSP 422 (605)
Q Consensus 388 VI~fd~P~s~~~yiqRiGRtgR~g~~-G~ai~~v~~ 422 (605)
||++..| .++|+||+||+||+|+. |.+++++.+
T Consensus 357 VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 357 LVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred EEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 9998777 68999999999999995 455777755
No 44
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=9.7e-45 Score=417.33 Aligned_cols=338 Identities=23% Similarity=0.278 Sum_probs=260.5
Q ss_pred cCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHH-HhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEE
Q 007402 26 KSFEELGLDLRLVHALNKKGIQKPTLIQQASIPL-ILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALV 104 (605)
Q Consensus 26 ~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~-~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~Li 104 (605)
+.|++++|++.+++++.+.||.+|+|+|.+||+. ++.|+|++++||||||||++|.+|+++.+.. +.++||
T Consensus 1 ~~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~--------~~kal~ 72 (737)
T PRK02362 1 MKIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR--------GGKALY 72 (737)
T ss_pred CChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc--------CCcEEE
Confidence 4699999999999999999999999999999998 7789999999999999999999999998853 567999
Q ss_pred EcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceE
Q 007402 105 LVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKI 184 (605)
Q Consensus 105 lvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~ 184 (605)
++||++||.|+++.+..+.. + ++++..++|+.+... . ....++|+|+||+++..++.++. ..+.++++
T Consensus 73 i~P~raLa~q~~~~~~~~~~-~----g~~v~~~tGd~~~~~--~-~l~~~~IiV~Tpek~~~llr~~~----~~l~~v~l 140 (737)
T PRK02362 73 IVPLRALASEKFEEFERFEE-L----GVRVGISTGDYDSRD--E-WLGDNDIIVATSEKVDSLLRNGA----PWLDDITC 140 (737)
T ss_pred EeChHHHHHHHHHHHHHhhc-C----CCEEEEEeCCcCccc--c-ccCCCCEEEECHHHHHHHHhcCh----hhhhhcCE
Confidence 99999999999999987642 1 678888888865432 1 23468999999999999888653 56789999
Q ss_pred EEEeCcchhccCCcHHHHHHHHhh---CCCCceEEEEeeecChhHHHHHHHhcCC-------CeEEEcCCccCccccccC
Q 007402 185 LVLDEADLLLSYGYEDDLKALSAV---IPRGCQCLLMSATSSSDVDKLKKLILHN-------PYILTLPEVGDVKDEVIP 254 (605)
Q Consensus 185 lViDEad~i~~~g~~~~l~~i~~~---lp~~~q~il~SATl~~~v~~l~~~~l~~-------p~~i~l~~~~~~~~~~~~ 254 (605)
|||||||++.+.++...++.++.. ++...|++++|||+++. ..+....-.. |+.+...-.. ......
T Consensus 141 vViDE~H~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~-~~la~wl~~~~~~~~~rpv~l~~~v~~--~~~~~~ 217 (737)
T PRK02362 141 VVVDEVHLIDSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNA-DELADWLDAELVDSEWRPIDLREGVFY--GGAIHF 217 (737)
T ss_pred EEEECccccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCH-HHHHHHhCCCcccCCCCCCCCeeeEec--CCeecc
Confidence 999999999988887777776554 35679999999999863 3343332111 2111100000 000000
Q ss_pred CCcEEEEEEccc-cchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcC--------------------------
Q 007402 255 KNVQQFWISCSE-RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFG-------------------------- 307 (605)
Q Consensus 255 ~~l~q~~~~~~~-~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~g-------------------------- 307 (605)
.. .+..+.+.. ......+...++ ..+++||||+++..|..++..|....
T Consensus 218 ~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 293 (737)
T PRK02362 218 DD-SQREVEVPSKDDTLNLVLDTLE---EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTE 293 (737)
T ss_pred cc-ccccCCCccchHHHHHHHHHHH---cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCcc
Confidence 00 111111111 122333333332 46899999999999999888876431
Q ss_pred ----------CcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccc
Q 007402 308 ----------IKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVV 377 (605)
Q Consensus 308 ----------i~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~ 377 (605)
..+.++|++|++.+|..+++.|++|.++|||||+.++
T Consensus 294 ~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla--------------------------------- 340 (737)
T PRK02362 294 TSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLA--------------------------------- 340 (737)
T ss_pred ccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhh---------------------------------
Confidence 3688999999999999999999999999999999976
Q ss_pred cccccCCccEEEE----eC-----CCCCchhHHHhhcccccCCCC--ccEEEEeCCc
Q 007402 378 RGIDFKNVHTVIN----FE-----MPQNAAGYVHRIGRTGRAYNT--GASVSLVSPD 423 (605)
Q Consensus 378 rGiD~~~v~~VI~----fd-----~P~s~~~yiqRiGRtgR~g~~--G~ai~~v~~~ 423 (605)
+|||+|.+.+||+ || .|.+..+|+||+|||||.|.. |.+++++...
T Consensus 341 ~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~ 397 (737)
T PRK02362 341 AGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSY 397 (737)
T ss_pred hhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCc
Confidence 8999999999997 77 688999999999999999875 8899988764
No 45
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=1.9e-43 Score=406.93 Aligned_cols=323 Identities=21% Similarity=0.228 Sum_probs=257.9
Q ss_pred CCCCHHHHHHHHH-CCCCCChHHHHHHHHHHhCC------CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEE
Q 007402 31 LGLDLRLVHALNK-KGIQKPTLIQQASIPLILEG------KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAAL 103 (605)
Q Consensus 31 ~~L~~~l~~al~~-~g~~~pt~iQ~~aIp~~l~g------kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~L 103 (605)
+..+..+.+.+.+ ++| +||++|.+||+.++++ .|+|++|+||||||.+|++|+++.+.. +.+++
T Consensus 434 ~~~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~--------g~qvl 504 (926)
T TIGR00580 434 FPPDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD--------GKQVA 504 (926)
T ss_pred CCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh--------CCeEE
Confidence 4567777777766 688 5999999999999985 799999999999999999999988755 56899
Q ss_pred EEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHH----cCCCcEEEECCchHHHHHhcCCCCCcccC
Q 007402 104 VLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL----AGPPDIVIATPGCMPKCLSTGVLQSKSFS 179 (605)
Q Consensus 104 ilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l----~~~~dIvV~TP~~l~~~l~~~~~~~~~~l 179 (605)
|||||++||.|+++.+..++..+ ++++..++|..+...+...+ .+.++|||+||. ++... ..+
T Consensus 505 vLvPT~~LA~Q~~~~f~~~~~~~----~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~----ll~~~-----v~f 571 (926)
T TIGR00580 505 VLVPTTLLAQQHFETFKERFANF----PVTIELLSRFRSAKEQNEILKELASGKIDILIGTHK----LLQKD-----VKF 571 (926)
T ss_pred EEeCcHHHHHHHHHHHHHHhccC----CcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHH----HhhCC-----CCc
Confidence 99999999999999999887544 67888888887755444332 346999999984 23222 567
Q ss_pred CCceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEE
Q 007402 180 DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259 (605)
Q Consensus 180 ~~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q 259 (605)
.++++|||||+|++ | ......+..++...|+++||||+.+....+....+.++.++..... ....+.+
T Consensus 572 ~~L~llVIDEahrf---g--v~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~-------~R~~V~t 639 (926)
T TIGR00580 572 KDLGLLIIDEEQRF---G--VKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPE-------DRLPVRT 639 (926)
T ss_pred ccCCEEEeeccccc---c--hhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCC-------CccceEE
Confidence 89999999999984 2 2345556667788999999999887766565556677777765431 1224556
Q ss_pred EEEEccccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHc--CCcEEEEcCCCCHHHHHHHHHHHHcCCCcEE
Q 007402 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKF--GIKSAILNAELPQNSRLHILEEFNAGLFDYL 337 (605)
Q Consensus 260 ~~~~~~~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~--gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iL 337 (605)
++...... .+...++......++++||||+++.++.++..|++. ++++.++||.|++.+|..++++|.+|+++||
T Consensus 640 ~v~~~~~~---~i~~~i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~IL 716 (926)
T TIGR00580 640 FVMEYDPE---LVREAIRRELLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVL 716 (926)
T ss_pred EEEecCHH---HHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEE
Confidence 55543321 111222222234679999999999999999999985 7899999999999999999999999999999
Q ss_pred EEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCC-CchhHHHhhcccccCCCCccE
Q 007402 338 IATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQ-NAAGYVHRIGRTGRAYNTGAS 416 (605)
Q Consensus 338 IaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~-s~~~yiqRiGRtgR~g~~G~a 416 (605)
|||++++ +|||+|+|++||+++.|. +..+|+||+||+||.|+.|.|
T Consensus 717 VaT~iie---------------------------------~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~a 763 (926)
T TIGR00580 717 VCTTIIE---------------------------------TGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYA 763 (926)
T ss_pred EECChhh---------------------------------cccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEE
Confidence 9999976 899999999999999976 577999999999999999999
Q ss_pred EEEeCCc
Q 007402 417 VSLVSPD 423 (605)
Q Consensus 417 i~~v~~~ 423 (605)
++|+.+.
T Consensus 764 ill~~~~ 770 (926)
T TIGR00580 764 YLLYPHQ 770 (926)
T ss_pred EEEECCc
Confidence 9999764
No 46
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=1.4e-43 Score=406.75 Aligned_cols=337 Identities=26% Similarity=0.358 Sum_probs=261.8
Q ss_pred cCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHH-HhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEE
Q 007402 26 KSFEELGLDLRLVHALNKKGIQKPTLIQQASIPL-ILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALV 104 (605)
Q Consensus 26 ~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~-~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~Li 104 (605)
++|++++|++.+.+.|.+.||.+|+|+|.+||+. ++.|+|++++||||||||++|.+|+++.++.. +.++||
T Consensus 1 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~-------~~~~l~ 73 (720)
T PRK00254 1 MKVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE-------GGKAVY 73 (720)
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc-------CCeEEE
Confidence 3689999999999999999999999999999985 88999999999999999999999999988652 568999
Q ss_pred EcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceE
Q 007402 105 LVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKI 184 (605)
Q Consensus 105 lvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~ 184 (605)
|+|+++|+.|+++.+..+.. + ++++..++|+.+.... ....++|+|+||+++..++.... ..++++++
T Consensus 74 l~P~~aLa~q~~~~~~~~~~-~----g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~----~~l~~l~l 141 (720)
T PRK00254 74 LVPLKALAEEKYREFKDWEK-L----GLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGS----SWIKDVKL 141 (720)
T ss_pred EeChHHHHHHHHHHHHHHhh-c----CCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCc----hhhhcCCE
Confidence 99999999999999887532 2 6888889988764321 23578999999999988887653 56789999
Q ss_pred EEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCC-cEEEEEE
Q 007402 185 LVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-VQQFWIS 263 (605)
Q Consensus 185 lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~-l~q~~~~ 263 (605)
|||||+|.+.+.++...+..++..++...|++++|||+++ ...+... +..+.... .. ........ ..+.+..
T Consensus 142 vViDE~H~l~~~~rg~~le~il~~l~~~~qiI~lSATl~n-~~~la~w-l~~~~~~~-~~----rpv~l~~~~~~~~~~~ 214 (720)
T PRK00254 142 VVADEIHLIGSYDRGATLEMILTHMLGRAQILGLSATVGN-AEELAEW-LNAELVVS-DW----RPVKLRKGVFYQGFLF 214 (720)
T ss_pred EEEcCcCccCCccchHHHHHHHHhcCcCCcEEEEEccCCC-HHHHHHH-hCCccccC-CC----CCCcceeeEecCCeee
Confidence 9999999999988899999999999989999999999986 3555553 33222110 00 00000000 1111111
Q ss_pred ccc--cch-----HHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHH-------------------------------
Q 007402 264 CSE--RDK-----LLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEK------------------------------- 305 (605)
Q Consensus 264 ~~~--~~k-----~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~------------------------------- 305 (605)
... ..+ ...++..++ ..+++||||+|+..|..++..|..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~i~---~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 291 (720)
T PRK00254 215 WEDGKIERFPNSWESLVYDAVK---KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLK 291 (720)
T ss_pred ccCcchhcchHHHHHHHHHHHH---hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHH
Confidence 111 111 123334443 267899999999999887765532
Q ss_pred --cCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccC
Q 007402 306 --FGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383 (605)
Q Consensus 306 --~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~ 383 (605)
....+.++|++|++.+|..+++.|++|.++|||||+.++ +|||+|
T Consensus 292 ~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa---------------------------------~Gvnip 338 (720)
T PRK00254 292 KALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLS---------------------------------AGINLP 338 (720)
T ss_pred HHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHh---------------------------------hhcCCC
Confidence 123588999999999999999999999999999999976 899999
Q ss_pred CccEEEE-------eCCCC-CchhHHHhhcccccCC--CCccEEEEeCCch
Q 007402 384 NVHTVIN-------FEMPQ-NAAGYVHRIGRTGRAY--NTGASVSLVSPDE 424 (605)
Q Consensus 384 ~v~~VI~-------fd~P~-s~~~yiqRiGRtgR~g--~~G~ai~~v~~~e 424 (605)
.+++||. ++.|. +..+|+||+|||||.| ..|.+++|+...+
T Consensus 339 a~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 339 AFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred ceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcc
Confidence 9999993 66654 4679999999999965 6799999987654
No 47
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=3.2e-42 Score=404.64 Aligned_cols=321 Identities=20% Similarity=0.195 Sum_probs=253.5
Q ss_pred CCCHH-HHHHHHHCCCCCChHHHHHHHHHHhCC------CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEE
Q 007402 32 GLDLR-LVHALNKKGIQKPTLIQQASIPLILEG------KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALV 104 (605)
Q Consensus 32 ~L~~~-l~~al~~~g~~~pt~iQ~~aIp~~l~g------kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~Li 104 (605)
.-|.. ..+....++| .||++|.+|||.++.+ .|+|++|+||+|||.+|+.+++..+.. +.+++|
T Consensus 584 ~~~~~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~--------g~qvlv 654 (1147)
T PRK10689 584 KHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN--------HKQVAV 654 (1147)
T ss_pred CCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc--------CCeEEE
Confidence 34444 4555677899 7999999999999997 899999999999999999888776533 678999
Q ss_pred EcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHc----CCCcEEEECCchHHHHHhcCCCCCcccCC
Q 007402 105 LVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALA----GPPDIVIATPGCMPKCLSTGVLQSKSFSD 180 (605)
Q Consensus 105 lvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~----~~~dIvV~TP~~l~~~l~~~~~~~~~~l~ 180 (605)
||||++||.|+++.+...+... .+++..+++..+...+...+. +.++|||+||+.+ ... ..+.
T Consensus 655 LvPT~eLA~Q~~~~f~~~~~~~----~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~~~-----v~~~ 721 (1147)
T PRK10689 655 LVPTTLLAQQHYDNFRDRFANW----PVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----QSD-----VKWK 721 (1147)
T ss_pred EeCcHHHHHHHHHHHHHhhccC----CceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----hCC-----CCHh
Confidence 9999999999999999865433 577778888877766655442 5799999999533 222 5567
Q ss_pred CceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEE
Q 007402 181 SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF 260 (605)
Q Consensus 181 ~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~ 260 (605)
++++|||||+|++ |+. ....+..++.++|+++||||+.+....+....+.+|.++..... ....+.++
T Consensus 722 ~L~lLVIDEahrf---G~~--~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~-------~r~~v~~~ 789 (1147)
T PRK10689 722 DLGLLIVDEEHRF---GVR--HKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA-------RRLAVKTF 789 (1147)
T ss_pred hCCEEEEechhhc---chh--HHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCC-------CCCCceEE
Confidence 8999999999996 433 24455777889999999999988887777778889988865431 11245555
Q ss_pred EEEccccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHc--CCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEE
Q 007402 261 WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKF--GIKSAILNAELPQNSRLHILEEFNAGLFDYLI 338 (605)
Q Consensus 261 ~~~~~~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~--gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLI 338 (605)
+...... .....+++.-...++++||||++..++.++..|... ++++.++||+|++.+|..++.+|.+|+++|||
T Consensus 790 ~~~~~~~---~~k~~il~el~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLV 866 (1147)
T PRK10689 790 VREYDSL---VVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLV 866 (1147)
T ss_pred EEecCcH---HHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 5443321 122223332233679999999999999999999987 78999999999999999999999999999999
Q ss_pred EcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCC-CCchhHHHhhcccccCCCCccEE
Q 007402 339 ATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP-QNAAGYVHRIGRTGRAYNTGASV 417 (605)
Q Consensus 339 aTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P-~s~~~yiqRiGRtgR~g~~G~ai 417 (605)
||++++ ||||+|+|++||..+.. .+...|+||+||+||.|+.|.|+
T Consensus 867 aTdIie---------------------------------rGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ 913 (1147)
T PRK10689 867 CTTIIE---------------------------------TGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAW 913 (1147)
T ss_pred ECchhh---------------------------------cccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEE
Confidence 999976 89999999999943322 13457999999999999999999
Q ss_pred EEeCC
Q 007402 418 SLVSP 422 (605)
Q Consensus 418 ~~v~~ 422 (605)
+++.+
T Consensus 914 ll~~~ 918 (1147)
T PRK10689 914 LLTPH 918 (1147)
T ss_pred EEeCC
Confidence 88854
No 48
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=5.1e-41 Score=374.83 Aligned_cols=337 Identities=26% Similarity=0.349 Sum_probs=272.7
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHH
Q 007402 33 LDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELC 112 (605)
Q Consensus 33 L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa 112 (605)
|++++.+.+.+. |.+|||.|.+|||.+.+|+++|+.||||||||+|+++|++..++.........+..+|+|.|.|+|.
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn 86 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALN 86 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHH
Confidence 899999999998 9999999999999999999999999999999999999999999987422235578999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcch
Q 007402 113 QQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADL 192 (605)
Q Consensus 113 ~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~ 192 (605)
..+...+....... ++.+..-+|+++.........++|||+|+||+.|.-++....+ ...+.+++++||||.|.
T Consensus 87 ~Di~~rL~~~~~~~----G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~--r~~l~~vr~VIVDEiHe 160 (814)
T COG1201 87 NDIRRRLEEPLREL----GIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKF--RELLRDVRYVIVDEIHA 160 (814)
T ss_pred HHHHHHHHHHHHHc----CCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHH--HHHhcCCcEEEeehhhh
Confidence 99999999999876 6777888999999888888899999999999999888876532 36789999999999999
Q ss_pred hccCCc----HHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCC-C-eEEEcCCccCccccccCCCcEEEEEEccc
Q 007402 193 LLSYGY----EDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHN-P-YILTLPEVGDVKDEVIPKNVQQFWISCSE 266 (605)
Q Consensus 193 i~~~g~----~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~-p-~~i~l~~~~~~~~~~~~~~l~q~~~~~~~ 266 (605)
+.+..- .-.++.+....+ ..|.|++|||..+..+...-+.-.+ + .++.+.. ..+....++....
T Consensus 161 l~~sKRG~~Lsl~LeRL~~l~~-~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~---------~k~~~i~v~~p~~ 230 (814)
T COG1201 161 LAESKRGVQLALSLERLRELAG-DFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSA---------AKKLEIKVISPVE 230 (814)
T ss_pred hhccccchhhhhhHHHHHhhCc-ccEEEeehhccCCHHHHHHHhcCCCCceEEEEccc---------CCcceEEEEecCC
Confidence 886532 234555666666 8999999999985544333333332 3 3333322 1122222221111
Q ss_pred ---------cchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcC-CcEEEEcCCCCHHHHHHHHHHHHcCCCcE
Q 007402 267 ---------RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFG-IKSAILNAELPQNSRLHILEEFNAGLFDY 336 (605)
Q Consensus 267 ---------~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~g-i~~~~l~~~l~~~~R~~i~~~F~~g~~~i 336 (605)
......++.+.+. ...+|||+||+..++.+...|.+.+ ..+.++||.++...|..+.++|++|+.++
T Consensus 231 ~~~~~~~~~~~~~~~i~~~v~~---~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lra 307 (814)
T COG1201 231 DLIYDEELWAALYERIAELVKK---HRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKA 307 (814)
T ss_pred ccccccchhHHHHHHHHHHHhh---cCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceE
Confidence 1123334444443 4589999999999999999999887 89999999999999999999999999999
Q ss_pred EEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhccccc-CCCCcc
Q 007402 337 LIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGR-AYNTGA 415 (605)
Q Consensus 337 LIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR-~g~~G~ 415 (605)
+|||..++. |||+.+|+.||++..|.++..++||+||+|+ .|....
T Consensus 308 vV~TSSLEL---------------------------------GIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Sk 354 (814)
T COG1201 308 VVATSSLEL---------------------------------GIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSK 354 (814)
T ss_pred EEEccchhh---------------------------------ccccCCceEEEEeCCcHHHHHHhHhccccccccCCccc
Confidence 999999883 9999999999999999999999999999986 555566
Q ss_pred EEEEeCC
Q 007402 416 SVSLVSP 422 (605)
Q Consensus 416 ai~~v~~ 422 (605)
++.+...
T Consensus 355 g~ii~~~ 361 (814)
T COG1201 355 GIIIAED 361 (814)
T ss_pred EEEEecC
Confidence 6766665
No 49
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=1e-40 Score=392.83 Aligned_cols=283 Identities=22% Similarity=0.290 Sum_probs=223.8
Q ss_pred CCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHH
Q 007402 44 KGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALI 123 (605)
Q Consensus 44 ~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~ 123 (605)
.|+ .||++|..+||.++.|+|+++.||||||||+ |++|++..+.. .+.++|||+||++|+.|+++.+..+.
T Consensus 77 ~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~-------~g~~alIL~PTreLa~Qi~~~l~~l~ 147 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK-------KGKKSYIIFPTRLLVEQVVEKLEKFG 147 (1176)
T ss_pred cCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh-------cCCeEEEEeccHHHHHHHHHHHHHHh
Confidence 488 8999999999999999999999999999995 66666655432 26789999999999999999999998
Q ss_pred HHhcCCcceEEEEEeCCCC--H---HHHHHHH-cCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhcc--
Q 007402 124 ELCKGQVQLKVVQLTSSMP--A---SDLRAAL-AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLS-- 195 (605)
Q Consensus 124 ~~~~~~~~i~v~~l~~~~~--~---~~~~~~l-~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~-- 195 (605)
... ++.+..+.++.+ . ..+...+ .+.++|+|+||++|.+++.. +....+++|||||||.|+.
T Consensus 148 ~~~----~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~------l~~~~~~~lVvDEaD~~L~~~ 217 (1176)
T PRK09401 148 EKV----GCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDE------LPKKKFDFVFVDDVDAVLKSS 217 (1176)
T ss_pred hhc----CceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHh------ccccccCEEEEEChHHhhhcc
Confidence 765 455555555432 1 2222233 35699999999999998862 4456799999999999996
Q ss_pred ---------CCcH-HHHHHHHhhCCC------------------------CceEEEEeeecChh-HHHHHHHhcCCCeEE
Q 007402 196 ---------YGYE-DDLKALSAVIPR------------------------GCQCLLMSATSSSD-VDKLKKLILHNPYIL 240 (605)
Q Consensus 196 ---------~g~~-~~l~~i~~~lp~------------------------~~q~il~SATl~~~-v~~l~~~~l~~p~~i 240 (605)
.||. +++..++..+|. ..|++++|||+++. +.. .++.++..+
T Consensus 218 k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~ 294 (1176)
T PRK09401 218 KNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGF 294 (1176)
T ss_pred cchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceE
Confidence 6785 788888888875 68999999999874 322 334555555
Q ss_pred EcCCccCccccccCCCcEEEEEEccccchHHHHHHHHHhhcCCCeEEEEecchhH---HHHHHHHHHHcCCcEEEEcCCC
Q 007402 241 TLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDM---AFRLKLFLEKFGIKSAILNAEL 317 (605)
Q Consensus 241 ~l~~~~~~~~~~~~~~l~q~~~~~~~~~k~~~l~~llk~~~~~~k~IIFv~s~~~---~~~L~~~L~~~gi~~~~l~~~l 317 (605)
.+.. ......++.|.|+.++ ++...+..+++.. ...+||||++... ++.++.+|+..|+++..+||+|
T Consensus 295 ~v~~-----~~~~~rnI~~~yi~~~--~k~~~L~~ll~~l--~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l 365 (1176)
T PRK09401 295 EVGS-----PVFYLRNIVDSYIVDE--DSVEKLVELVKRL--GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF 365 (1176)
T ss_pred EecC-----cccccCCceEEEEEcc--cHHHHHHHHHHhc--CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH
Confidence 5544 2334568999998776 5666667776532 4579999999777 9999999999999999999999
Q ss_pred CHHHHHHHHHHHHcCCCcEEEE----cCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCC-ccEEEEeC
Q 007402 318 PQNSRLHILEEFNAGLFDYLIA----TDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN-VHTVINFE 392 (605)
Q Consensus 318 ~~~~R~~i~~~F~~g~~~iLIa----Td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~-v~~VI~fd 392 (605)
...+++|.+|+++|||| ||+++ ||||+|+ |++|||||
T Consensus 366 -----~~~l~~F~~G~~~VLVatas~tdv~a---------------------------------RGIDiP~~IryVI~y~ 407 (1176)
T PRK09401 366 -----ERKFEKFEEGEVDVLVGVASYYGVLV---------------------------------RGIDLPERIRYAIFYG 407 (1176)
T ss_pred -----HHHHHHHHCCCCCEEEEecCCCCcee---------------------------------ecCCCCcceeEEEEeC
Confidence 23459999999999999 46654 9999999 89999999
Q ss_pred CCC
Q 007402 393 MPQ 395 (605)
Q Consensus 393 ~P~ 395 (605)
+|.
T Consensus 408 vP~ 410 (1176)
T PRK09401 408 VPK 410 (1176)
T ss_pred CCC
Confidence 996
No 50
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=5.1e-40 Score=373.43 Aligned_cols=317 Identities=21% Similarity=0.239 Sum_probs=239.3
Q ss_pred HHHHHH-HHHCCCCCChHHHHHHHHHHhCC------CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcC
Q 007402 35 LRLVHA-LNKKGIQKPTLIQQASIPLILEG------KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVP 107 (605)
Q Consensus 35 ~~l~~a-l~~~g~~~pt~iQ~~aIp~~l~g------kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvP 107 (605)
..+.+. +..++| +||++|.+||+.+.++ .++|++|+||||||++|++|+++.+.. +.+++|++|
T Consensus 248 ~~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~--------g~q~lilaP 318 (681)
T PRK10917 248 GELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA--------GYQAALMAP 318 (681)
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc--------CCeEEEEec
Confidence 444444 455788 6999999999999987 489999999999999999999988754 678999999
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHH----HHcCCCcEEEECCchHHHHHhcCCCCCcccCCCce
Q 007402 108 TRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRA----ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLK 183 (605)
Q Consensus 108 treLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~----~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~ 183 (605)
|++||.|+++.+.+++... ++++..++|+.+...... ...+.++|||+||+.+.+ ...+.+++
T Consensus 319 T~~LA~Q~~~~l~~l~~~~----~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~---------~v~~~~l~ 385 (681)
T PRK10917 319 TEILAEQHYENLKKLLEPL----GIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD---------DVEFHNLG 385 (681)
T ss_pred cHHHHHHHHHHHHHHHhhc----CcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc---------cchhcccc
Confidence 9999999999999988755 689999999988644333 233569999999977632 14567899
Q ss_pred EEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEEEEE
Q 007402 184 ILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWIS 263 (605)
Q Consensus 184 ~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~ 263 (605)
++||||+|++.. .....+...+...++++||||+.+....+......++..+. . .......+.++++.
T Consensus 386 lvVIDE~Hrfg~-----~qr~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~--~-----~p~~r~~i~~~~~~ 453 (681)
T PRK10917 386 LVIIDEQHRFGV-----EQRLALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVID--E-----LPPGRKPITTVVIP 453 (681)
T ss_pred eEEEechhhhhH-----HHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEe--c-----CCCCCCCcEEEEeC
Confidence 999999998522 22233333455689999999987665443322222222222 1 11112245555554
Q ss_pred ccccchHHHHHHHHHhh-cCCCeEEEEecchh--------HHHHHHHHHHHc--CCcEEEEcCCCCHHHHHHHHHHHHcC
Q 007402 264 CSERDKLLYILTLLKLE-LVQKKALIFTNTID--------MAFRLKLFLEKF--GIKSAILNAELPQNSRLHILEEFNAG 332 (605)
Q Consensus 264 ~~~~~k~~~l~~llk~~-~~~~k~IIFv~s~~--------~~~~L~~~L~~~--gi~~~~l~~~l~~~~R~~i~~~F~~g 332 (605)
....++ ++..+... ....+++|||+.++ .+..+...|... ++++..+||+|++.+|..++++|.+|
T Consensus 454 ~~~~~~---~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g 530 (681)
T PRK10917 454 DSRRDE---VYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAG 530 (681)
T ss_pred cccHHH---HHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 433322 23333322 23569999999654 445667777654 57899999999999999999999999
Q ss_pred CCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCC-CchhHHHhhcccccCC
Q 007402 333 LFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQ-NAAGYVHRIGRTGRAY 411 (605)
Q Consensus 333 ~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~-s~~~yiqRiGRtgR~g 411 (605)
+++|||||++++ +|||+|++++||++|.|. ....|.||+||+||+|
T Consensus 531 ~~~ILVaT~vie---------------------------------~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g 577 (681)
T PRK10917 531 EIDILVATTVIE---------------------------------VGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGA 577 (681)
T ss_pred CCCEEEECccee---------------------------------eCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCC
Confidence 999999999976 799999999999999997 4677888999999999
Q ss_pred CCccEEEEeC
Q 007402 412 NTGASVSLVS 421 (605)
Q Consensus 412 ~~G~ai~~v~ 421 (605)
..|.|++++.
T Consensus 578 ~~g~~ill~~ 587 (681)
T PRK10917 578 AQSYCVLLYK 587 (681)
T ss_pred CceEEEEEEC
Confidence 9999999995
No 51
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=5.8e-42 Score=345.09 Aligned_cols=356 Identities=31% Similarity=0.447 Sum_probs=297.6
Q ss_pred cCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhh---------------
Q 007402 26 KSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFN--------------- 90 (605)
Q Consensus 26 ~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~--------------- 90 (605)
..|++||.-|.|-.|..++.|.-||.+|.++||++|.|.|+|..|.||||||-||.+|++|.+..
T Consensus 2 ~af~e~gv~pel~~a~~e~dw~lptdvqaeaiplilgggdvlmaaetgsgktgaf~lpilqiv~etlrd~~egk~gk~~~ 81 (725)
T KOG0349|consen 2 TAFEEFGVLPELGMATDELDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQIVWETLRDLEEGKAGKGGM 81 (725)
T ss_pred cchHhhCcchHhhhhhhhhccccccccccccccEEecCCcEEEEeccCCCCccceehhhHHHHHHHHHhHhhcccCCCcc
Confidence 46999999999999999999999999999999999999999999999999999999999997765
Q ss_pred --------------------------------------------------------------------------------
Q 007402 91 -------------------------------------------------------------------------------- 90 (605)
Q Consensus 91 -------------------------------------------------------------------------------- 90 (605)
T Consensus 82 ~~ga~~~w~mn~~Drg~alaI~~dGL~CqSre~KeWhGcRaT~Gl~gkGK~YyEvtitd~GLCRVGWsT~qasLdlGt~~ 161 (725)
T KOG0349|consen 82 ADGAPREWKMNKQDRGLALAIDEDGLACQSREKKEWHGCRATAGLYGKGKYYYEVTITDKGLCRVGWSTLQASLDLGTGL 161 (725)
T ss_pred cCCCccccccCccccCceeeEcCCccccchhHHhhhhccccccccccCceEEEEEEeccCceeeechhhcccccccCccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 007402 91 -------------------------------------------------------------------------------- 90 (605)
Q Consensus 91 -------------------------------------------------------------------------------- 90 (605)
T Consensus 162 ~gFGfGGTGkKS~nkqFDdYGe~Ft~~DvIGCyLDld~~~v~fsKNG~~lg~AF~ip~~~kn~~lfPAvvlkNael~fNF 241 (725)
T KOG0349|consen 162 DGFGFGGTGKKSTNKQFDDYGEPFTLNDVIGCYLDLDSRTVWFSKNGEQLGAAFSIPVKYKNSNLFPAVVLKNAELSFNF 241 (725)
T ss_pred cccccCccCccccccccccccCcccccceeeEEEeccCceEEEecCccccceeEEcChhhcccccchheeeccceEEEec
Confidence
Q ss_pred ------------------cCC-----------CC-------CCCCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEE
Q 007402 91 ------------------ESS-----------PK-------SKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKV 134 (605)
Q Consensus 91 ------------------~~~-----------~~-------~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v 134 (605)
... .. ..+.+.++|+-|+|||++|++..++++-.+.++ ..++.
T Consensus 242 G~~~FKfpPgngFva~s~Ap~e~~~~n~~~g~~a~~~~~k~~pNap~avivepsrelaEqt~N~i~~Fk~h~~n-p~~r~ 320 (725)
T KOG0349|consen 242 GSQPFKFPPGNGFVAVSDAPNEHSKANVNWGSYAEAPSAKPAPNAPEAVIVEPSRELAEQTHNQIEEFKMHTSN-PEVRS 320 (725)
T ss_pred CCCccccCCCCceEEeecCCccccccCccccccccCcccccCCCCcceeEecCcHHHHHHHHhhHHHHHhhcCC-hhhhh
Confidence 000 00 134678999999999999999999988766543 25677
Q ss_pred EEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCcHHHHHHHHhhCCC---
Q 007402 135 VQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPR--- 211 (605)
Q Consensus 135 ~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~~~l~~i~~~lp~--- 211 (605)
..+.|+.....|...+.++.+|||+||+|+.+.+..+. ..+...+++|+||||.+++.||.+.|..+...+|.
T Consensus 321 lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~----~~lt~crFlvlDead~lL~qgy~d~I~r~h~qip~~ts 396 (725)
T KOG0349|consen 321 LLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGL----VTLTHCRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTS 396 (725)
T ss_pred hhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccc----eeeeeeEEEEecchhhhhhcccHHHHHHHhccchhhhc
Confidence 77788888889999999999999999999999999885 77889999999999999999999999999888874
Q ss_pred ---CceEEEEeeecCh-hHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEEEEEccc-cc------------------
Q 007402 212 ---GCQCLLMSATSSS-DVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE-RD------------------ 268 (605)
Q Consensus 212 ---~~q~il~SATl~~-~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~~~-~~------------------ 268 (605)
..|.+++|||+.. +|..+.+..++-|..+.+.. +...+..+.+.+..+.. .+
T Consensus 397 dg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkg-----eD~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~k 471 (725)
T KOG0349|consen 397 DGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKG-----EDLVPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTK 471 (725)
T ss_pred CCcccccceeeeEEeEEEeeehhhhhccCceeEeccc-----ccccchhhccceeecCCccCccHHHHhhhhccCCcccc
Confidence 5799999999863 45677778899999998876 33333344443322211 00
Q ss_pred -----------hHHHHHHHHHh--------hcCCCeEEEEecchhHHHHHHHHHHHcC---CcEEEEcCCCCHHHHHHHH
Q 007402 269 -----------KLLYILTLLKL--------ELVQKKALIFTNTIDMAFRLKLFLEKFG---IKSAILNAELPQNSRLHIL 326 (605)
Q Consensus 269 -----------k~~~l~~llk~--------~~~~~k~IIFv~s~~~~~~L~~~L~~~g---i~~~~l~~~l~~~~R~~i~ 326 (605)
-......+++- ...-.++||||.+...|..|..+|.+.| +.|+++|++..+.+|...+
T Consensus 472 dn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nl 551 (725)
T KOG0349|consen 472 DNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANL 551 (725)
T ss_pred cccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHH
Confidence 01111112221 1124589999999999999999999876 5889999999999999999
Q ss_pred HHHHcCCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcc
Q 007402 327 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGR 406 (605)
Q Consensus 327 ~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGR 406 (605)
+.|.++.+..|||||+++ ||+|+..+-++||..+|.+-..|+|||||
T Consensus 552 e~Fkk~dvkflictdvaa---------------------------------rgldi~g~p~~invtlpd~k~nyvhrigr 598 (725)
T KOG0349|consen 552 ESFKKFDVKFLICTDVAA---------------------------------RGLDITGLPFMINVTLPDDKTNYVHRIGR 598 (725)
T ss_pred HhhhhcCeEEEEEehhhh---------------------------------ccccccCCceEEEEecCcccchhhhhhhc
Confidence 999999999999999987 99999999999999999999999999999
Q ss_pred cccCCCCccEEEEeCCch
Q 007402 407 TGRAYNTGASVSLVSPDE 424 (605)
Q Consensus 407 tgR~g~~G~ai~~v~~~e 424 (605)
+||+.+-|.||++|....
T Consensus 599 vgraermglaislvat~~ 616 (725)
T KOG0349|consen 599 VGRAERMGLAISLVATVP 616 (725)
T ss_pred cchhhhcceeEEEeeccc
Confidence 999999999999997543
No 52
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=9.1e-41 Score=381.67 Aligned_cols=331 Identities=18% Similarity=0.232 Sum_probs=250.3
Q ss_pred cCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEE
Q 007402 26 KSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVL 105 (605)
Q Consensus 26 ~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~Lil 105 (605)
+.|++|+|++.+++.+...||. ++++|.++++.+++|++++++||||||||++|.+++++.+.. +.++||+
T Consensus 1 ~~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~--------~~k~v~i 71 (674)
T PRK01172 1 MKISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA--------GLKSIYI 71 (674)
T ss_pred CcHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh--------CCcEEEE
Confidence 4689999999999999999997 999999999999999999999999999999999999988764 4579999
Q ss_pred cCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEE
Q 007402 106 VPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKIL 185 (605)
Q Consensus 106 vPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~l 185 (605)
+|+++||.|+++.+..+.. . ++++...+|+.+... . ....++|+|+||+++..++.+.. ..+.++++|
T Consensus 72 ~P~raLa~q~~~~~~~l~~-~----g~~v~~~~G~~~~~~--~-~~~~~dIiv~Tpek~~~l~~~~~----~~l~~v~lv 139 (674)
T PRK01172 72 VPLRSLAMEKYEELSRLRS-L----GMRVKISIGDYDDPP--D-FIKRYDVVILTSEKADSLIHHDP----YIINDVGLI 139 (674)
T ss_pred echHHHHHHHHHHHHHHhh-c----CCeEEEEeCCCCCCh--h-hhccCCEEEECHHHHHHHHhCCh----hHHhhcCEE
Confidence 9999999999999987542 2 567777777755322 1 22468999999999988887643 567899999
Q ss_pred EEeCcchhccCCcHHHHHHHHh---hCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEE---
Q 007402 186 VLDEADLLLSYGYEDDLKALSA---VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ--- 259 (605)
Q Consensus 186 ViDEad~i~~~g~~~~l~~i~~---~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q--- 259 (605)
||||||++.+.++...++.++. .++...|+++||||+++. ..+.+.+ ..+. +.. ...+..+..
T Consensus 140 ViDEaH~l~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n~-~~la~wl-~~~~-~~~--------~~r~vpl~~~i~ 208 (674)
T PRK01172 140 VADEIHIIGDEDRGPTLETVLSSARYVNPDARILALSATVSNA-NELAQWL-NASL-IKS--------NFRPVPLKLGIL 208 (674)
T ss_pred EEecchhccCCCccHHHHHHHHHHHhcCcCCcEEEEeCccCCH-HHHHHHh-CCCc-cCC--------CCCCCCeEEEEE
Confidence 9999999988777777776654 445689999999999763 4455433 2221 110 000111111
Q ss_pred ----EEEEccccchHHHHHHHHHh-hcCCCeEEEEecchhHHHHHHHHHHHc-------------------------CCc
Q 007402 260 ----FWISCSERDKLLYILTLLKL-ELVQKKALIFTNTIDMAFRLKLFLEKF-------------------------GIK 309 (605)
Q Consensus 260 ----~~~~~~~~~k~~~l~~llk~-~~~~~k~IIFv~s~~~~~~L~~~L~~~-------------------------gi~ 309 (605)
.+.......... +..+++. ....+++||||+++..|..++..|.+. ...
T Consensus 209 ~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g 287 (674)
T PRK01172 209 YRKRLILDGYERSQVD-INSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHG 287 (674)
T ss_pred ecCeeeeccccccccc-HHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcC
Confidence 111111111111 2223332 234679999999999999999888653 124
Q ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEE
Q 007402 310 SAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVI 389 (605)
Q Consensus 310 ~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI 389 (605)
+.++||+|+..+|..+++.|++|.++|||||+.++ +|+|+|+. .||
T Consensus 288 v~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la---------------------------------~Gvnipa~-~VI 333 (674)
T PRK01172 288 VAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLA---------------------------------AGVNLPAR-LVI 333 (674)
T ss_pred EEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhh---------------------------------ccCCCcce-EEE
Confidence 77899999999999999999999999999999976 89999986 555
Q ss_pred EeCC---------CCCchhHHHhhcccccCCC--CccEEEEeCCc
Q 007402 390 NFEM---------PQNAAGYVHRIGRTGRAYN--TGASVSLVSPD 423 (605)
Q Consensus 390 ~fd~---------P~s~~~yiqRiGRtgR~g~--~G~ai~~v~~~ 423 (605)
++|. |.+..+|.||+|||||.|. .|.+++++...
T Consensus 334 I~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~ 378 (674)
T PRK01172 334 VRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASP 378 (674)
T ss_pred EcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCc
Confidence 5554 4578899999999999985 66677776543
No 53
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=2.6e-40 Score=390.22 Aligned_cols=312 Identities=25% Similarity=0.356 Sum_probs=233.2
Q ss_pred EEcCCCchHHHHHHHHHHHHHhhcCCC-----CCCCCCeEEEEcCcHHHHHHHHHHHHHHHHHh--------cCCcceEE
Q 007402 68 ARAKTGSGKTFAYLLPLLHRLFNESSP-----KSKLAPAALVLVPTRELCQQVYSEVMALIELC--------KGQVQLKV 134 (605)
Q Consensus 68 v~a~TGsGKT~a~~lpil~~ll~~~~~-----~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~--------~~~~~i~v 134 (605)
|+||||||||+||.+|++++++..... ....+.++|||+|+++|+.|+.+.++..+..+ ....++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999999999864311 11346899999999999999999987633211 11236899
Q ss_pred EEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccC--C--cHHHHHHHHhhCC
Q 007402 135 VQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSY--G--YEDDLKALSAVIP 210 (605)
Q Consensus 135 ~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~--g--~~~~l~~i~~~lp 210 (605)
..++|+++...+...+...|||||+||++|..++.+.. ...++++++|||||+|.|++. | +...+..|...++
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~---r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~ 157 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRA---RETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLH 157 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhh---hhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCC
Confidence 99999999988888888899999999999998886532 256899999999999999864 3 4456777777788
Q ss_pred CCceEEEEeeecChhHHHHHHHhc-CCCeEEEcCCccCccccccCCCcEEEEEEccccc--------------------h
Q 007402 211 RGCQCLLMSATSSSDVDKLKKLIL-HNPYILTLPEVGDVKDEVIPKNVQQFWISCSERD--------------------K 269 (605)
Q Consensus 211 ~~~q~il~SATl~~~v~~l~~~~l-~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~~~~~--------------------k 269 (605)
...|+|++|||+++. +.+.+.+. .+|+.+.... ......+. .++.+.+.. .
T Consensus 158 ~~~QrIgLSATI~n~-eevA~~L~g~~pv~Iv~~~------~~r~~~l~-v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i 229 (1490)
T PRK09751 158 TSAQRIGLSATVRSA-SDVAAFLGGDRPVTVVNPP------AMRHPQIR-IVVPVANMDDVSSVASGTGEDSHAGREGSI 229 (1490)
T ss_pred CCCeEEEEEeeCCCH-HHHHHHhcCCCCEEEECCC------CCcccceE-EEEecCchhhccccccccccccchhhhhhh
Confidence 889999999999874 55554333 3465543211 11111222 222221110 0
Q ss_pred HHHH-HHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcC---------------------------------CcEEEEcC
Q 007402 270 LLYI-LTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFG---------------------------------IKSAILNA 315 (605)
Q Consensus 270 ~~~l-~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~g---------------------------------i~~~~l~~ 315 (605)
+..+ ..++.......++||||||+..|+.+...|.+.. ..+.++||
T Consensus 230 ~~~v~~~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHG 309 (1490)
T PRK09751 230 WPYIETGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHG 309 (1490)
T ss_pred hHHHHHHHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccc
Confidence 1111 1233322346789999999999999999997642 12568999
Q ss_pred CCCHHHHHHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCC
Q 007402 316 ELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQ 395 (605)
Q Consensus 316 ~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~ 395 (605)
+|+..+|..+++.|++|.+++||||+.++ +|||+++|++|||||.|.
T Consensus 310 sLSkeeR~~IE~~fK~G~LrvLVATssLE---------------------------------LGIDIg~VDlVIq~gsP~ 356 (1490)
T PRK09751 310 SVSKEQRAITEQALKSGELRCVVATSSLE---------------------------------LGIDMGAVDLVIQVATPL 356 (1490)
T ss_pred cCCHHHHHHHHHHHHhCCceEEEeCcHHH---------------------------------ccCCcccCCEEEEeCCCC
Confidence 99999999999999999999999999977 899999999999999999
Q ss_pred CchhHHHhhcccccCCCCccEEEEeCCch
Q 007402 396 NAAGYVHRIGRTGRAYNTGASVSLVSPDE 424 (605)
Q Consensus 396 s~~~yiqRiGRtgR~g~~G~ai~~v~~~e 424 (605)
++.+|+||+||+||. ..|.+..++.+.+
T Consensus 357 sVas~LQRiGRAGR~-~gg~s~gli~p~~ 384 (1490)
T PRK09751 357 SVASGLQRIGRAGHQ-VGGVSKGLFFPRT 384 (1490)
T ss_pred CHHHHHHHhCCCCCC-CCCccEEEEEeCc
Confidence 999999999999997 3445444444443
No 54
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=1e-39 Score=368.60 Aligned_cols=318 Identities=21% Similarity=0.227 Sum_probs=237.1
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHhCC------CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCc
Q 007402 35 LRLVHALNKKGIQKPTLIQQASIPLILEG------KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPT 108 (605)
Q Consensus 35 ~~l~~al~~~g~~~pt~iQ~~aIp~~l~g------kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPt 108 (605)
..+.+.+..++| +||++|.+||+.++.+ .+.|++|+||||||++|++|++..+.. +.+++|++||
T Consensus 223 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~--------g~qvlilaPT 293 (630)
T TIGR00643 223 ELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA--------GYQVALMAPT 293 (630)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc--------CCcEEEECCH
Confidence 344566788999 7999999999999987 258999999999999999999987754 6689999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHH----HHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceE
Q 007402 109 RELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRA----ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKI 184 (605)
Q Consensus 109 reLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~----~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~ 184 (605)
++||.|+++.+.+++... ++++..++|+........ ...+.++|||+||+.+.+ . ..+.++++
T Consensus 294 ~~LA~Q~~~~~~~l~~~~----gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~----~-----~~~~~l~l 360 (630)
T TIGR00643 294 EILAEQHYNSLRNLLAPL----GIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE----K-----VEFKRLAL 360 (630)
T ss_pred HHHHHHHHHHHHHHhccc----CcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc----c-----ccccccce
Confidence 999999999999987654 688999999987655332 234568999999987643 1 45678999
Q ss_pred EEEeCcchhccCCcHHHHHHHHhhCC--CCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEEEE
Q 007402 185 LVLDEADLLLSYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWI 262 (605)
Q Consensus 185 lViDEad~i~~~g~~~~l~~i~~~lp--~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~ 262 (605)
+||||+|.+. +. ....+....+ ..+|+++||||+.+....+.. ..+.....+.. .......+..+++
T Consensus 361 vVIDEaH~fg---~~-qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~~--~~~l~~~~i~~-----~p~~r~~i~~~~~ 429 (630)
T TIGR00643 361 VIIDEQHRFG---VE-QRKKLREKGQGGFTPHVLVMSATPIPRTLALTV--YGDLDTSIIDE-----LPPGRKPITTVLI 429 (630)
T ss_pred EEEechhhcc---HH-HHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHh--cCCcceeeecc-----CCCCCCceEEEEe
Confidence 9999999853 21 2223333333 268999999998765433321 11111111111 0111223455444
Q ss_pred EccccchHHHHHHHHHhh-cCCCeEEEEecchh--------HHHHHHHHHHHc--CCcEEEEcCCCCHHHHHHHHHHHHc
Q 007402 263 SCSERDKLLYILTLLKLE-LVQKKALIFTNTID--------MAFRLKLFLEKF--GIKSAILNAELPQNSRLHILEEFNA 331 (605)
Q Consensus 263 ~~~~~~k~~~l~~llk~~-~~~~k~IIFv~s~~--------~~~~L~~~L~~~--gi~~~~l~~~l~~~~R~~i~~~F~~ 331 (605)
.... + ..++..+... ....+++|||+.++ .++.++..|... ++.+..+||+|+..+|..++++|.+
T Consensus 430 ~~~~--~-~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~ 506 (630)
T TIGR00643 430 KHDE--K-DIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFRE 506 (630)
T ss_pred Ccch--H-HHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 3322 2 3334444333 23568999999763 455666666653 6789999999999999999999999
Q ss_pred CCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCC-CchhHHHhhcccccC
Q 007402 332 GLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQ-NAAGYVHRIGRTGRA 410 (605)
Q Consensus 332 g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~-s~~~yiqRiGRtgR~ 410 (605)
|+.+|||||++++ +|||+|++++||++|.|. +...|.||+||+||+
T Consensus 507 g~~~ILVaT~vie---------------------------------~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~ 553 (630)
T TIGR00643 507 GEVDILVATTVIE---------------------------------VGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRG 553 (630)
T ss_pred CCCCEEEECceee---------------------------------cCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccC
Confidence 9999999999977 799999999999999997 577788899999999
Q ss_pred CCCccEEEEeC
Q 007402 411 YNTGASVSLVS 421 (605)
Q Consensus 411 g~~G~ai~~v~ 421 (605)
|..|.|++++.
T Consensus 554 g~~g~~il~~~ 564 (630)
T TIGR00643 554 DHQSYCLLVYK 564 (630)
T ss_pred CCCcEEEEEEC
Confidence 99999999993
No 55
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.6e-40 Score=358.94 Aligned_cols=321 Identities=24% Similarity=0.361 Sum_probs=258.2
Q ss_pred HHHHH-CCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHH
Q 007402 39 HALNK-KGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYS 117 (605)
Q Consensus 39 ~al~~-~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~ 117 (605)
..|.+ +||..+++-|.++|..+++|+|+++.+|||+||+++|.||++-. ...+||+.|..+|...+.+
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~-----------~G~TLVVSPLiSLM~DQV~ 75 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL-----------EGLTLVVSPLISLMKDQVD 75 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc-----------CCCEEEECchHHHHHHHHH
Confidence 44555 59999999999999999999999999999999999999998853 2259999999999999888
Q ss_pred HHHHHHHHhcCCcceEEEEEeCCCCHHHHHH----HHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchh
Q 007402 118 EVMALIELCKGQVQLKVVQLTSSMPASDLRA----ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLL 193 (605)
Q Consensus 118 ~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~----~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i 193 (605)
.+... ++.+..+++..+.+.... +..+..++++-+|+++..--.... +..-.+.++||||||++
T Consensus 76 ~l~~~--------Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~----L~~~~i~l~vIDEAHCi 143 (590)
T COG0514 76 QLEAA--------GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLEL----LKRLPISLVAIDEAHCI 143 (590)
T ss_pred HHHHc--------CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHH----HHhCCCceEEechHHHH
Confidence 88776 788888888877665443 344668999999999865332221 33456889999999999
Q ss_pred ccCC--cHHHHHHHH---hhCCCCceEEEEeeecChhHHH--HHHHhcCCCeEEEcCCccCccccccCCCcEEEEEEcc-
Q 007402 194 LSYG--YEDDLKALS---AVIPRGCQCLLMSATSSSDVDK--LKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS- 265 (605)
Q Consensus 194 ~~~g--~~~~l~~i~---~~lp~~~q~il~SATl~~~v~~--l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~~- 265 (605)
..|| |++++..+. ..+| +..++.+|||.++.+.. +..+.+.+|.++... ....|+...++...
T Consensus 144 SqWGhdFRP~Y~~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~s--------fdRpNi~~~v~~~~~ 214 (590)
T COG0514 144 SQWGHDFRPDYRRLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRGS--------FDRPNLALKVVEKGE 214 (590)
T ss_pred hhcCCccCHhHHHHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEec--------CCCchhhhhhhhccc
Confidence 9998 777777664 4555 78999999999988843 344555666555432 22334443333332
Q ss_pred ccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCc
Q 007402 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQT 345 (605)
Q Consensus 266 ~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~ 345 (605)
..++...+.. ......+..||||.|+..++.++.+|.+.|+.+..+|++|+...|..+.++|..++..|+|||
T Consensus 215 ~~~q~~fi~~--~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT----- 287 (590)
T COG0514 215 PSDQLAFLAT--VLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVAT----- 287 (590)
T ss_pred HHHHHHHHHh--hccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEe-----
Confidence 2333332222 123446679999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCccEEEEeCCchh
Q 007402 346 KEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM 425 (605)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~~v~~~e~ 425 (605)
.+||| |||-|||.+|||||+|.|+++|+|-+||+||.|.+..|++|+++.|.
T Consensus 288 --------------------------~AFGM--GIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~ 339 (590)
T COG0514 288 --------------------------NAFGM--GIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDI 339 (590)
T ss_pred --------------------------ccccC--ccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEeeccccH
Confidence 45888 99999999999999999999999999999999999999999999876
Q ss_pred h
Q 007402 426 K 426 (605)
Q Consensus 426 ~ 426 (605)
.
T Consensus 340 ~ 340 (590)
T COG0514 340 R 340 (590)
T ss_pred H
Confidence 3
No 56
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=2e-39 Score=356.93 Aligned_cols=323 Identities=19% Similarity=0.153 Sum_probs=254.4
Q ss_pred CCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHH
Q 007402 44 KGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALI 123 (605)
Q Consensus 44 ~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~ 123 (605)
+|. .||++|..++|.+++|+ |+.|.||+|||++|++|++...+. +..++|++||++||.|.++++..++
T Consensus 100 lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~--------G~~v~VvTptreLA~qdae~~~~l~ 168 (656)
T PRK12898 100 LGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA--------GLPVHVITVNDYLAERDAELMRPLY 168 (656)
T ss_pred hCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc--------CCeEEEEcCcHHHHHHHHHHHHHHH
Confidence 576 79999999999999999 999999999999999999988655 6789999999999999999999999
Q ss_pred HHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchH-HHHHhcCCCC---------------------CcccCCC
Q 007402 124 ELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCM-PKCLSTGVLQ---------------------SKSFSDS 181 (605)
Q Consensus 124 ~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l-~~~l~~~~~~---------------------~~~~l~~ 181 (605)
.++ ++++..+.|+++... ......+||+|+|...+ .++|+.+... .......
T Consensus 169 ~~l----Glsv~~i~gg~~~~~--r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~ 242 (656)
T PRK12898 169 EAL----GLTVGCVVEDQSPDE--RRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRG 242 (656)
T ss_pred hhc----CCEEEEEeCCCCHHH--HHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccc
Confidence 887 789999999987543 33446899999999887 5566554321 1123466
Q ss_pred ceEEEEeCcchhccC------------------CcHH--------------------------------HHHHHHhhCC-
Q 007402 182 LKILVLDEADLLLSY------------------GYED--------------------------------DLKALSAVIP- 210 (605)
Q Consensus 182 l~~lViDEad~i~~~------------------g~~~--------------------------------~l~~i~~~lp- 210 (605)
+.+.||||||.++=. .+.. .++.++..++
T Consensus 243 ~~~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~ 322 (656)
T PRK12898 243 LHFAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPP 322 (656)
T ss_pred cceeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchh
Confidence 889999999976500 0000 0111110000
Q ss_pred -----------------------CC-------------------------------------------------------
Q 007402 211 -----------------------RG------------------------------------------------------- 212 (605)
Q Consensus 211 -----------------------~~------------------------------------------------------- 212 (605)
++
T Consensus 323 ~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q 402 (656)
T PRK12898 323 AWRGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQ 402 (656)
T ss_pred hcccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHH
Confidence 00
Q ss_pred ------ceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEEEEEccccchHHHHHHHHHhhc-CCCe
Q 007402 213 ------CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLEL-VQKK 285 (605)
Q Consensus 213 ------~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~~~~~k~~~l~~llk~~~-~~~k 285 (605)
..+.+||||.+...+++.+.|.-+++.|.... .......+.++.++..+|+..+..+++... ...+
T Consensus 403 ~~Fr~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~k-------p~~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~p 475 (656)
T PRK12898 403 RFFRRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNR-------PSQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRP 475 (656)
T ss_pred HHHHhhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCC-------CccceecCCEEEeCHHHHHHHHHHHHHHHHhcCCC
Confidence 15577999999888899999988887776544 122234556677888889998888887532 3568
Q ss_pred EEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCcccccccCC
Q 007402 286 ALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKH 365 (605)
Q Consensus 286 ~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~ 365 (605)
+||||+|+..++.+...|...|+++.+|||.++.. ...+..|..+...|+||||++.
T Consensus 476 vLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~~r--E~~ii~~ag~~g~VlVATdmAg--------------------- 532 (656)
T PRK12898 476 VLVGTRSVAASERLSALLREAGLPHQVLNAKQDAE--EAAIVARAGQRGRITVATNMAG--------------------- 532 (656)
T ss_pred EEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcHHH--HHHHHHHcCCCCcEEEEccchh---------------------
Confidence 99999999999999999999999999999987544 4445556555667999999976
Q ss_pred CCCccccccccccccccC---Ccc-----EEEEeCCCCCchhHHHhhcccccCCCCccEEEEeCCchh
Q 007402 366 PKAKLDSEFGVVRGIDFK---NVH-----TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM 425 (605)
Q Consensus 366 ~~~~~~~~~gv~rGiD~~---~v~-----~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~~v~~~e~ 425 (605)
||+||+ +|. +|||||+|.|...|+||+|||||.|++|.+++|++.+|.
T Consensus 533 ------------RGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD~ 588 (656)
T PRK12898 533 ------------RGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLEDD 588 (656)
T ss_pred ------------cccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEEechhHH
Confidence 999999 776 999999999999999999999999999999999998765
No 57
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=1.1e-39 Score=364.20 Aligned_cols=316 Identities=20% Similarity=0.229 Sum_probs=239.9
Q ss_pred hHHHHHHHHHHhCCCcEEEEcCCCchHHHH---------HHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHH
Q 007402 50 TLIQQASIPLILEGKDVVARAKTGSGKTFA---------YLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVM 120 (605)
Q Consensus 50 t~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a---------~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~ 120 (605)
..+|+++++.+++|+|+|+.|+||||||.+ |++|.+..+..-. ......+++|++||||||.|+...+.
T Consensus 166 ~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~--~~~~~~~ilvt~PrreLa~qi~~~i~ 243 (675)
T PHA02653 166 PDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID--PNFIERPIVLSLPRVALVRLHSITLL 243 (675)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc--cccCCcEEEEECcHHHHHHHHHHHHH
Confidence 469999999999999999999999999997 4455555442110 01235689999999999999999988
Q ss_pred HHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCcHH
Q 007402 121 ALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYED 200 (605)
Q Consensus 121 ~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~~ 200 (605)
+...+.. ..++.+...+|+... .+........+|+|+|++.. ...++++++|||||||.+...+ +
T Consensus 244 ~~vg~~~-~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~-----------l~~L~~v~~VVIDEaHEr~~~~--D 308 (675)
T PHA02653 244 KSLGFDE-IDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLT-----------LNKLFDYGTVIIDEVHEHDQIG--D 308 (675)
T ss_pred HHhCccc-cCCceEEEEECCcch-HHhhcccCCCCEEEEeCccc-----------ccccccCCEEEccccccCccch--h
Confidence 7665421 114567777888763 22222333679999996521 1356789999999999988775 4
Q ss_pred HHHHHHhhC-CCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEEEEEcc----------ccch
Q 007402 201 DLKALSAVI-PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS----------ERDK 269 (605)
Q Consensus 201 ~l~~i~~~l-p~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~~----------~~~k 269 (605)
.+..++..+ +...|+++||||++++++.+. .++.+|..+.++. .....+.++|+... +.++
T Consensus 309 llL~llk~~~~~~rq~ILmSATl~~dv~~l~-~~~~~p~~I~I~g-------rt~~pV~~~yi~~~~~~~~~~~y~~~~k 380 (675)
T PHA02653 309 IIIAVARKHIDKIRSLFLMTATLEDDRDRIK-EFFPNPAFVHIPG-------GTLFPISEVYVKNKYNPKNKRAYIEEEK 380 (675)
T ss_pred HHHHHHHHhhhhcCEEEEEccCCcHhHHHHH-HHhcCCcEEEeCC-------CcCCCeEEEEeecCcccccchhhhHHHH
Confidence 555555544 344699999999999988874 6888998887743 12245777776433 1223
Q ss_pred HHHHHHHHHhh-cCCCeEEEEecchhHHHHHHHHHHHc--CCcEEEEcCCCCHHHHHHHHHHH-HcCCCcEEEEcCCCCc
Q 007402 270 LLYILTLLKLE-LVQKKALIFTNTIDMAFRLKLFLEKF--GIKSAILNAELPQNSRLHILEEF-NAGLFDYLIATDDTQT 345 (605)
Q Consensus 270 ~~~l~~llk~~-~~~~k~IIFv~s~~~~~~L~~~L~~~--gi~~~~l~~~l~~~~R~~i~~~F-~~g~~~iLIaTd~~~~ 345 (605)
...+..+.+.. ...+.+||||+++.+|..+...|++. ++.+..|||+|++. .+++++| ++|..+||||||+++
T Consensus 381 ~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAE- 457 (675)
T PHA02653 381 KNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLE- 457 (675)
T ss_pred HHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhh-
Confidence 33333333322 23568999999999999999999987 78999999999975 4667787 689999999999988
Q ss_pred ccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeC---CCC---------CchhHHHhhcccccCCCC
Q 007402 346 KEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFE---MPQ---------NAAGYVHRIGRTGRAYNT 413 (605)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd---~P~---------s~~~yiqRiGRtgR~g~~ 413 (605)
||||+++|++||++| .|. |..+|+||+|||||. .+
T Consensus 458 --------------------------------RGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~ 504 (675)
T PHA02653 458 --------------------------------SSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SP 504 (675)
T ss_pred --------------------------------ccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CC
Confidence 899999999999999 665 788999999999999 89
Q ss_pred ccEEEEeCCchhh
Q 007402 414 GASVSLVSPDEMK 426 (605)
Q Consensus 414 G~ai~~v~~~e~~ 426 (605)
|.|+.|+++.+..
T Consensus 505 G~c~rLyt~~~~~ 517 (675)
T PHA02653 505 GTYVYFYDLDLLK 517 (675)
T ss_pred CeEEEEECHHHhH
Confidence 9999999987753
No 58
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=2.1e-39 Score=388.95 Aligned_cols=329 Identities=19% Similarity=0.262 Sum_probs=256.4
Q ss_pred HHHHHHHH-CCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHH
Q 007402 36 RLVHALNK-KGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQ 114 (605)
Q Consensus 36 ~l~~al~~-~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Q 114 (605)
.+.+.+.+ +|| +||++|+.+||.+++|+|+++.||||||||++++++++.... .+.++|||+||++|+.|
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~--------~g~~aLVl~PTreLa~Q 137 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL--------KGKKCYIILPTTLLVKQ 137 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh--------cCCeEEEEECHHHHHHH
Confidence 34455665 799 699999999999999999999999999999966666554321 26789999999999999
Q ss_pred HHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHH---H-cCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCc
Q 007402 115 VYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAA---L-AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEA 190 (605)
Q Consensus 115 v~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~---l-~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEa 190 (605)
+++.+..++..++. ++++..++|+.+...+... + .+.++|||+||++|.+++... . ..+++++|||||
T Consensus 138 i~~~l~~l~~~~~~--~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l-----~-~~~i~~iVVDEA 209 (1638)
T PRK14701 138 TVEKIESFCEKANL--DVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM-----K-HLKFDFIFVDDV 209 (1638)
T ss_pred HHHHHHHHHhhcCC--ceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH-----h-hCCCCEEEEECc
Confidence 99999999876643 6788889999887665432 2 346999999999998876532 1 267999999999
Q ss_pred chhcc-----------CCcHHHHHH----HHh----------------------hCCCCce-EEEEeeecChhHHHHHHH
Q 007402 191 DLLLS-----------YGYEDDLKA----LSA----------------------VIPRGCQ-CLLMSATSSSDVDKLKKL 232 (605)
Q Consensus 191 d~i~~-----------~g~~~~l~~----i~~----------------------~lp~~~q-~il~SATl~~~v~~l~~~ 232 (605)
|+|+. .||.+++.. ++. .+|+..| ++++|||++...... .
T Consensus 210 D~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~--~ 287 (1638)
T PRK14701 210 DAFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRV--K 287 (1638)
T ss_pred eeccccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHH--H
Confidence 99986 478777764 322 3455566 577999999642222 2
Q ss_pred hcCCCeEEEcCCccCccccccCCCcEEEEEEccccchHHHHHHHHHhhcCCCeEEEEecchhH---HHHHHHHHHHcCCc
Q 007402 233 ILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDM---AFRLKLFLEKFGIK 309 (605)
Q Consensus 233 ~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~~~~~k~~~l~~llk~~~~~~k~IIFv~s~~~---~~~L~~~L~~~gi~ 309 (605)
+++++..+.+.. ......++.|.|+.++...+ ..+..+++.. ...+||||++... |+.++.+|...|++
T Consensus 288 l~~~~l~f~v~~-----~~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~--g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~ 359 (1638)
T PRK14701 288 LYRELLGFEVGS-----GRSALRNIVDVYLNPEKIIK-EHVRELLKKL--GKGGLIFVPIDEGAEKAEEIEKYLLEDGFK 359 (1638)
T ss_pred HhhcCeEEEecC-----CCCCCCCcEEEEEECCHHHH-HHHHHHHHhC--CCCeEEEEeccccchHHHHHHHHHHHCCCe
Confidence 346777776654 34455688999988776655 3555666543 4679999999775 68999999999999
Q ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccc-cccccccCC-ccE
Q 007402 310 SAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFG-VVRGIDFKN-VHT 387 (605)
Q Consensus 310 ~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-v~rGiD~~~-v~~ 387 (605)
+..+||+ |..++++|.+|+++|||||+.- || ++||||+|+ |++
T Consensus 360 a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~------------------------------~gvaaRGIDiP~~Vry 404 (1638)
T PRK14701 360 IELVSAK-----NKKGFDLFEEGEIDYLIGVATY------------------------------YGTLVRGLDLPERIRF 404 (1638)
T ss_pred EEEecch-----HHHHHHHHHcCCCCEEEEecCC------------------------------CCeeEecCccCCccCE
Confidence 9999995 8899999999999999999631 11 349999998 999
Q ss_pred EEEeCCCC---CchhHHHhh-------------cccccCCCCccEEEEeCCchhh
Q 007402 388 VINFEMPQ---NAAGYVHRI-------------GRTGRAYNTGASVSLVSPDEMK 426 (605)
Q Consensus 388 VI~fd~P~---s~~~yiqRi-------------GRtgR~g~~G~ai~~v~~~e~~ 426 (605)
|||||+|. +.+.|.|.. ||+||.|.++.++..+.+.+..
T Consensus 405 vi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~ 459 (1638)
T PRK14701 405 AVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGVLDVFPEDVE 459 (1638)
T ss_pred EEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchhHHHhHHHHHH
Confidence 99999999 888887766 9999999988887555555443
No 59
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=1.4e-38 Score=375.20 Aligned_cols=294 Identities=21% Similarity=0.294 Sum_probs=223.9
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHH
Q 007402 36 RLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQV 115 (605)
Q Consensus 36 ~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv 115 (605)
++.+.+.+....+||++|+.+||.++.|+|++++||||||||+ |++|++..+.. .+.++|||+||++||.|+
T Consensus 66 ~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~-------~g~~vLIL~PTreLa~Qi 137 (1171)
T TIGR01054 66 EFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK-------KGKRCYIILPTTLLVIQV 137 (1171)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh-------cCCeEEEEeCHHHHHHHH
Confidence 3445555544447999999999999999999999999999996 77888776543 267899999999999999
Q ss_pred HHHHHHHHHHhcCCcce-EEEEEeCCCCHHHHHH---HH-cCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCc
Q 007402 116 YSEVMALIELCKGQVQL-KVVQLTSSMPASDLRA---AL-AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEA 190 (605)
Q Consensus 116 ~~~~~~l~~~~~~~~~i-~v~~l~~~~~~~~~~~---~l-~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEa 190 (605)
++.+..++...+- .. .+..++|+.+...+.. .+ .+.++|||+||++|.+++..- .. +++++|||||
T Consensus 138 ~~~l~~l~~~~~i--~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l------~~-~~~~iVvDEa 208 (1171)
T TIGR01054 138 AEKISSLAEKAGV--GTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDEL------GP-KFDFIFVDDV 208 (1171)
T ss_pred HHHHHHHHHhcCC--ceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHh------cC-CCCEEEEeCh
Confidence 9999999876531 11 2345778887765432 22 346999999999999887642 11 7999999999
Q ss_pred chhcc-----------CCcHHH-HHHHH----------------------hhCCCCce--EEEEeee-cChhHHHHHHHh
Q 007402 191 DLLLS-----------YGYEDD-LKALS----------------------AVIPRGCQ--CLLMSAT-SSSDVDKLKKLI 233 (605)
Q Consensus 191 d~i~~-----------~g~~~~-l~~i~----------------------~~lp~~~q--~il~SAT-l~~~v~~l~~~~ 233 (605)
|.|++ .||.++ +..++ +.+|...| ++++||| .+..+. ..+
T Consensus 209 D~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~---~~l 285 (1171)
T TIGR01054 209 DALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKR---AKL 285 (1171)
T ss_pred HhhhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccH---HHH
Confidence 99998 678764 55543 34555555 5668999 454432 234
Q ss_pred cCCCeEEEcCCccCccccccCCCcEEEEEEccccchHHHHHHHHHhhcCCCeEEEEecch---hHHHHHHHHHHHcCCcE
Q 007402 234 LHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTI---DMAFRLKLFLEKFGIKS 310 (605)
Q Consensus 234 l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~~~~~k~~~l~~llk~~~~~~k~IIFv~s~---~~~~~L~~~L~~~gi~~ 310 (605)
+.++..+.+.. ......++.+.|+.+.. +...+..+++.. ..++||||++. +.|+.|+.+|...|+++
T Consensus 286 ~r~ll~~~v~~-----~~~~~r~I~~~~~~~~~--~~~~L~~ll~~l--~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a 356 (1171)
T TIGR01054 286 FRELLGFEVGG-----GSDTLRNVVDVYVEDED--LKETLLEIVKKL--GTGGIVYVSIDYGKEKAEEIAEFLENHGVKA 356 (1171)
T ss_pred cccccceEecC-----ccccccceEEEEEeccc--HHHHHHHHHHHc--CCCEEEEEeccccHHHHHHHHHHHHhCCceE
Confidence 56666555543 33445678888886654 233445555432 46799999999 99999999999999999
Q ss_pred EEEcCCCCHHHHHHHHHHHHcCCCcEEEEc----CCCCcccccccCCCCCcccccccCCCCCccccccccccccccCC-c
Q 007402 311 AILNAELPQNSRLHILEEFNAGLFDYLIAT----DDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN-V 385 (605)
Q Consensus 311 ~~l~~~l~~~~R~~i~~~F~~g~~~iLIaT----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~-v 385 (605)
..+||+++. .+++.|++|+++||||| |+++ ||||+|+ |
T Consensus 357 ~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~a---------------------------------RGIDip~~V 399 (1171)
T TIGR01054 357 VAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLV---------------------------------RGLDLPERV 399 (1171)
T ss_pred EEEeCCCCH----HHHHHHHcCCCCEEEEeccccCccc---------------------------------ccCCCCccc
Confidence 999999973 68999999999999995 6654 9999999 8
Q ss_pred cEEEEeCCCC
Q 007402 386 HTVINFEMPQ 395 (605)
Q Consensus 386 ~~VI~fd~P~ 395 (605)
++|||||+|.
T Consensus 400 ~~vI~~~~P~ 409 (1171)
T TIGR01054 400 RYAVFLGVPK 409 (1171)
T ss_pred cEEEEECCCC
Confidence 9999999873
No 60
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=6.7e-38 Score=351.65 Aligned_cols=324 Identities=20% Similarity=0.233 Sum_probs=244.3
Q ss_pred CCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHH
Q 007402 44 KGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALI 123 (605)
Q Consensus 44 ~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~ 123 (605)
+|. .|+++|..+++.+++|+ |+.+.||+|||++|++|++...+. |..++|++||++||.|.++++..++
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~--------G~~v~VvTpt~~LA~qd~e~~~~l~ 143 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE--------GKGVHLITVNDYLAKRDAEEMGQVY 143 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc--------CCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 587 89999999999999887 999999999999999999977765 6679999999999999999999999
Q ss_pred HHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchH-HHHHhcCCCC--CcccCCCceEEEEeCcchhccC----
Q 007402 124 ELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCM-PKCLSTGVLQ--SKSFSDSLKILVLDEADLLLSY---- 196 (605)
Q Consensus 124 ~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l-~~~l~~~~~~--~~~~l~~l~~lViDEad~i~~~---- 196 (605)
.++ ++++..+.|+.+...++.. ...+||+++||+++ .++|..+... ....+..+.++||||||.|+=.
T Consensus 144 ~~l----Gl~v~~i~g~~~~~~~r~~-~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~t 218 (790)
T PRK09200 144 EFL----GLTVGLNFSDIDDASEKKA-IYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQT 218 (790)
T ss_pred hhc----CCeEEEEeCCCCcHHHHHH-hcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCC
Confidence 987 7899999999883333332 35699999999999 6666654311 1245688999999999987611
Q ss_pred ------------CcHHHHHHHHhhCCCC----------------------------------------------------
Q 007402 197 ------------GYEDDLKALSAVIPRG---------------------------------------------------- 212 (605)
Q Consensus 197 ------------g~~~~l~~i~~~lp~~---------------------------------------------------- 212 (605)
.+...+..+...+...
T Consensus 219 pliisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~ 298 (790)
T PRK09200 219 PLIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVL 298 (790)
T ss_pred ceeeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHH
Confidence 0112222222222110
Q ss_pred -----------------------------------------------------------------ceEEEEeeecChhHH
Q 007402 213 -----------------------------------------------------------------CQCLLMSATSSSDVD 227 (605)
Q Consensus 213 -----------------------------------------------------------------~q~il~SATl~~~v~ 227 (605)
..+.+||.|....-.
T Consensus 299 ~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~ 378 (790)
T PRK09200 299 FKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEK 378 (790)
T ss_pred hhcCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHH
Confidence 023445555444334
Q ss_pred HHHHHhcCCCeEEEcCCccCccccccCCCcEEEEEEccccchHHHHHHHHHh-hcCCCeEEEEecchhHHHHHHHHHHHc
Q 007402 228 KLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKL-ELVQKKALIFTNTIDMAFRLKLFLEKF 306 (605)
Q Consensus 228 ~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~~~~~k~~~l~~llk~-~~~~~k~IIFv~s~~~~~~L~~~L~~~ 306 (605)
++.+.|-- .++.++. ..+....-..-.+.++..+|+..+...+.. .....++||||+|+..+..|...|.+.
T Consensus 379 e~~~~Y~l--~v~~IPt-----~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~ 451 (790)
T PRK09200 379 EFFEVYNM--EVVQIPT-----NRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEA 451 (790)
T ss_pred HHHHHhCC--cEEECCC-----CCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC
Confidence 44333322 1222222 111100111123445677888888777754 345679999999999999999999999
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCcccccccccccccc---C
Q 007402 307 GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDF---K 383 (605)
Q Consensus 307 gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~---~ 383 (605)
|+++.++||.+.+.++..+...+..| .|+||||+++ ||+|+ +
T Consensus 452 gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAg---------------------------------RG~DI~l~~ 496 (790)
T PRK09200 452 GIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAG---------------------------------RGTDIKLGE 496 (790)
T ss_pred CCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchh---------------------------------cCcCCCccc
Confidence 99999999999998888888887777 7999999976 99999 6
Q ss_pred Ccc-----EEEEeCCCCCchhHHHhhcccccCCCCccEEEEeCCchh
Q 007402 384 NVH-----TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM 425 (605)
Q Consensus 384 ~v~-----~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~~v~~~e~ 425 (605)
+|. +|||||+|.|...|+||+|||||.|++|.+++|++.+|.
T Consensus 497 ~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD~ 543 (790)
T PRK09200 497 GVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLEDD 543 (790)
T ss_pred ccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcchHH
Confidence 998 999999999999999999999999999999999998765
No 61
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=2.5e-37 Score=352.94 Aligned_cols=303 Identities=18% Similarity=0.179 Sum_probs=235.3
Q ss_pred HHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceE
Q 007402 54 QASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLK 133 (605)
Q Consensus 54 ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~ 133 (605)
.+.+..+..+.++|++|+||||||.+|.+|+++... .+.+++|+.|||++|.|+++.+..... ...+..
T Consensus 8 ~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~--------~~~~ilvlqPrR~aA~qiA~rva~~~~---~~~g~~ 76 (819)
T TIGR01970 8 PALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG--------IGGKIIMLEPRRLAARSAAQRLASQLG---EAVGQT 76 (819)
T ss_pred HHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc--------cCCeEEEEeCcHHHHHHHHHHHHHHhC---CCcCcE
Confidence 445556667789999999999999999999998752 145799999999999999998865432 111333
Q ss_pred EEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcch-hccCCcHH-HHHHHHhhCCC
Q 007402 134 VVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADL-LLSYGYED-DLKALSAVIPR 211 (605)
Q Consensus 134 v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~-i~~~g~~~-~l~~i~~~lp~ 211 (605)
+.......+ .....++|+|+||++|++++... ..++++++|||||||. +++.++.- .+..+...++.
T Consensus 77 VGy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~d-----~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~ 145 (819)
T TIGR01970 77 VGYRVRGEN------KVSRRTRLEVVTEGILTRMIQDD-----PELDGVGALIFDEFHERSLDADLGLALALDVQSSLRE 145 (819)
T ss_pred EEEEEcccc------ccCCCCcEEEECCcHHHHHHhhC-----cccccCCEEEEeccchhhhccchHHHHHHHHHHhcCC
Confidence 333323221 23456899999999999998764 5688999999999994 66655433 34556667788
Q ss_pred CceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEEEEEccccchH-----HHHHHHHHhhcCCCeE
Q 007402 212 GCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKL-----LYILTLLKLELVQKKA 286 (605)
Q Consensus 212 ~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~~~~~k~-----~~l~~llk~~~~~~k~ 286 (605)
..|+++||||++... + ..++.++.++.... . ...+.++|..+...+++ ..+..++.. ..+.+
T Consensus 146 dlqlIlmSATl~~~~--l-~~~l~~~~vI~~~g-----r---~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~--~~g~i 212 (819)
T TIGR01970 146 DLKILAMSATLDGER--L-SSLLPDAPVVESEG-----R---SFPVEIRYLPLRGDQRLEDAVSRAVEHALAS--ETGSI 212 (819)
T ss_pred CceEEEEeCCCCHHH--H-HHHcCCCcEEEecC-----c---ceeeeeEEeecchhhhHHHHHHHHHHHHHHh--cCCcE
Confidence 999999999999754 3 45666666665543 1 12467788777655443 223333332 36899
Q ss_pred EEEecchhHHHHHHHHHHH---cCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCccccccc
Q 007402 287 LIFTNTIDMAFRLKLFLEK---FGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSK 363 (605)
Q Consensus 287 IIFv~s~~~~~~L~~~L~~---~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~ 363 (605)
||||++..++..+...|+. .++.++.|||+|++.+|..+++.|.+|..+||||||+++
T Consensus 213 LVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAE------------------- 273 (819)
T TIGR01970 213 LVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAE------------------- 273 (819)
T ss_pred EEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHh-------------------
Confidence 9999999999999999987 478999999999999999999999999999999999988
Q ss_pred CCCCCccccccccccccccCCccEEEEeCCCCC------------------chhHHHhhcccccCCCCccEEEEeCCchh
Q 007402 364 KHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQN------------------AAGYVHRIGRTGRAYNTGASVSLVSPDEM 425 (605)
Q Consensus 364 ~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s------------------~~~yiqRiGRtgR~g~~G~ai~~v~~~e~ 425 (605)
+|||+++|++|||+++|.. -.+|+||+||+||. .+|.|+.|++..+.
T Consensus 274 --------------rgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~ 338 (819)
T TIGR01970 274 --------------TSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQH 338 (819)
T ss_pred --------------hcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHH
Confidence 8999999999999999863 24589999999999 89999999998654
No 62
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=3.5e-36 Score=334.83 Aligned_cols=324 Identities=20% Similarity=0.217 Sum_probs=232.7
Q ss_pred CCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHH
Q 007402 44 KGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALI 123 (605)
Q Consensus 44 ~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~ 123 (605)
+|. .|+++|..+++.+..| .|+.++||+|||++|++|++...+. +..++|++|+++||.|+++++..++
T Consensus 67 lgl-rpydVQlig~l~l~~G--~Iaem~TGeGKTLta~Lpa~l~aL~--------g~~V~VVTpn~yLA~Rdae~m~~l~ 135 (762)
T TIGR03714 67 LGM-FPYDVQVLGAIVLHQG--NIAEMKTGEGKTLTATMPLYLNALT--------GKGAMLVTTNDYLAKRDAEEMGPVY 135 (762)
T ss_pred cCC-CccHHHHHHHHHhcCC--ceeEecCCcchHHHHHHHHHHHhhc--------CCceEEeCCCHHHHHHHHHHHHHHH
Confidence 576 6777777777766555 6999999999999999999877765 4459999999999999999999999
Q ss_pred HHhcCCcceEEEEEeCCCC---HHHHHHHHcCCCcEEEECCchH-HHHHhcCCCC--CcccCCCceEEEEeCcchhccCC
Q 007402 124 ELCKGQVQLKVVQLTSSMP---ASDLRAALAGPPDIVIATPGCM-PKCLSTGVLQ--SKSFSDSLKILVLDEADLLLSYG 197 (605)
Q Consensus 124 ~~~~~~~~i~v~~l~~~~~---~~~~~~~l~~~~dIvV~TP~~l-~~~l~~~~~~--~~~~l~~l~~lViDEad~i~~~g 197 (605)
.++ ++++..+.++.. ...........+||+++||+++ .+++...... ....+..+.++||||||.|+-..
T Consensus 136 ~~L----GLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDe 211 (762)
T TIGR03714 136 EWL----GLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDS 211 (762)
T ss_pred hhc----CCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhcc
Confidence 887 566666555411 1222233446899999999999 5655433111 12456789999999999886211
Q ss_pred ----------------cHHHHHHHHhhCCCC-------------------------------------------------
Q 007402 198 ----------------YEDDLKALSAVIPRG------------------------------------------------- 212 (605)
Q Consensus 198 ----------------~~~~l~~i~~~lp~~------------------------------------------------- 212 (605)
....+..+...+...
T Consensus 212 artpliisg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A 291 (762)
T TIGR03714 212 AQTPLVISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRA 291 (762)
T ss_pred CcCCeeeeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHH
Confidence 111222222222211
Q ss_pred --------------------------------------------------------------------ceEEEEeeecCh
Q 007402 213 --------------------------------------------------------------------CQCLLMSATSSS 224 (605)
Q Consensus 213 --------------------------------------------------------------------~q~il~SATl~~ 224 (605)
..+.+||.|...
T Consensus 292 ~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~ 371 (762)
T TIGR03714 292 HYLFKRNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKV 371 (762)
T ss_pred HHHHhcCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChh
Confidence 133445555444
Q ss_pred hHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEEEEEccccchHHHHHHHHHh-hcCCCeEEEEecchhHHHHHHHHH
Q 007402 225 DVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKL-ELVQKKALIFTNTIDMAFRLKLFL 303 (605)
Q Consensus 225 ~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~~~~~k~~~l~~llk~-~~~~~k~IIFv~s~~~~~~L~~~L 303 (605)
.-.++.+.|- -.++.++. ..+....-..-.+.+...+|+..+...++. .....++||||+|++.++.+...|
T Consensus 372 ~~~Ef~~iY~--l~v~~IPt-----~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L 444 (762)
T TIGR03714 372 AEKEFIETYS--LSVVKIPT-----NKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELL 444 (762)
T ss_pred HHHHHHHHhC--CCEEEcCC-----CCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHH
Confidence 4444443332 11222222 111100111123556677888888777654 345679999999999999999999
Q ss_pred HHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccC
Q 007402 304 EKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383 (605)
Q Consensus 304 ~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~ 383 (605)
.+.|+++.+||+.+.+.+|..+...|+.| .|+||||+++ ||+||+
T Consensus 445 ~~~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAg---------------------------------RGtDI~ 489 (762)
T TIGR03714 445 LREGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAG---------------------------------RGTDIK 489 (762)
T ss_pred HHCCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccc---------------------------------cccCCC
Confidence 99999999999999999988887777777 7999999976 999999
Q ss_pred ---------CccEEEEeCCCCCchhHHHhhcccccCCCCccEEEEeCCchh
Q 007402 384 ---------NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM 425 (605)
Q Consensus 384 ---------~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~~v~~~e~ 425 (605)
++.+|++|++|..... +||+|||||+|++|.+++|++.+|.
T Consensus 490 l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~eD~ 539 (762)
T TIGR03714 490 LGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSLEDD 539 (762)
T ss_pred CCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEccchh
Confidence 9999999999988766 9999999999999999999998765
No 63
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=2e-37 Score=329.01 Aligned_cols=301 Identities=21% Similarity=0.181 Sum_probs=209.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCH-
Q 007402 65 DVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPA- 143 (605)
Q Consensus 65 dvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~- 143 (605)
|+++.||||||||.+|++|++..+.. ..+.+++|++|+++|+.|+++.+..++.. .+..+++....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~------~~~~~ii~v~P~~~L~~q~~~~l~~~f~~-------~~~~~~~~~~~~ 67 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS------QKADRVIIALPTRATINAMYRRAKELFGS-------NLGLLHSSSSFK 67 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh------CCCCeEEEEeehHHHHHHHHHHHHHHhCc-------ccEEeeccHHHH
Confidence 68999999999999999999987643 23568999999999999999999887521 22222332211
Q ss_pred -----------HHHHHHH------cCCCcEEEECCchHHHHHhcCCCCCcccC--CCceEEEEeCcchhccCCcHHHHHH
Q 007402 144 -----------SDLRAAL------AGPPDIVIATPGCMPKCLSTGVLQSKSFS--DSLKILVLDEADLLLSYGYEDDLKA 204 (605)
Q Consensus 144 -----------~~~~~~l------~~~~dIvV~TP~~l~~~l~~~~~~~~~~l--~~l~~lViDEad~i~~~g~~~~l~~ 204 (605)
....... ...++|+|+||+++...+..+.......+ -..+++||||||.+...++.. +..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~ 146 (358)
T TIGR01587 68 RIKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILA 146 (358)
T ss_pred HHhccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHH
Confidence 0001111 12367999999999887765321000111 123789999999998875444 566
Q ss_pred HHhhCC-CCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEEEEEcc--ccchHHHHHHHHHhhc
Q 007402 205 LSAVIP-RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS--ERDKLLYILTLLKLEL 281 (605)
Q Consensus 205 i~~~lp-~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~~--~~~k~~~l~~llk~~~ 281 (605)
++..++ .+.|+++||||+++.+..+...+...+....... ........+.+..+. ...+...+..+++...
T Consensus 147 ~l~~l~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 220 (358)
T TIGR01587 147 VLEVLKDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDL------KEERRFERHRFIKIESDKVGEISSLERLLEFIK 220 (358)
T ss_pred HHHHHHHcCCCEEEEecCchHHHHHHHhcCCCcccccCCCC------ccccccccccceeeccccccCHHHHHHHHHHhh
Confidence 555554 4789999999999776665554433221111110 000001122222222 2345555555655444
Q ss_pred CCCeEEEEecchhHHHHHHHHHHHcCC--cEEEEcCCCCHHHHHH----HHHHHHcCCCcEEEEcCCCCcccccccCCCC
Q 007402 282 VQKKALIFTNTIDMAFRLKLFLEKFGI--KSAILNAELPQNSRLH----ILEEFNAGLFDYLIATDDTQTKEKDQSDEGG 355 (605)
Q Consensus 282 ~~~k~IIFv~s~~~~~~L~~~L~~~gi--~~~~l~~~l~~~~R~~----i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~ 355 (605)
..+++||||++++.|+.+...|.+.+. .+..+||++++.+|.. +++.|.+|...||||||+++
T Consensus 221 ~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~----------- 289 (358)
T TIGR01587 221 KGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIE----------- 289 (358)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchh-----------
Confidence 578999999999999999999988776 4899999999999976 48899999999999999976
Q ss_pred CcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCc----cEEEEeC
Q 007402 356 HVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTG----ASVSLVS 421 (605)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G----~ai~~v~ 421 (605)
+|||++ +++||+++.| +++|+||+||+||.|+.+ ..++|..
T Consensus 290 ----------------------~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~ 334 (358)
T TIGR01587 290 ----------------------ASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITI 334 (358)
T ss_pred ----------------------ceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEee
Confidence 899995 8999998877 789999999999988643 4455544
No 64
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=4.5e-37 Score=351.67 Aligned_cols=303 Identities=17% Similarity=0.200 Sum_probs=233.9
Q ss_pred HHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceE
Q 007402 54 QASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLK 133 (605)
Q Consensus 54 ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~ 133 (605)
.+.+..+.+++++++.|+||||||.+|.+|+++.... ..+++|++|||++|.|+++.+..... ...+..
T Consensus 11 ~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~--------~~~ilvlqPrR~aA~qia~rva~~l~---~~~g~~ 79 (812)
T PRK11664 11 PELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI--------NGKIIMLEPRRLAARNVAQRLAEQLG---EKPGET 79 (812)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc--------CCeEEEECChHHHHHHHHHHHHHHhC---cccCce
Confidence 3455556678999999999999999999999975321 34799999999999999998865432 112345
Q ss_pred EEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcch-hccCCc-HHHHHHHHhhCCC
Q 007402 134 VVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADL-LLSYGY-EDDLKALSAVIPR 211 (605)
Q Consensus 134 v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~-i~~~g~-~~~l~~i~~~lp~ 211 (605)
+....++.+. .....+|+|+||+++++++... ..++++++|||||||. .++..+ ...+..+...+++
T Consensus 80 VGy~vr~~~~------~~~~t~I~v~T~G~Llr~l~~d-----~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~ 148 (812)
T PRK11664 80 VGYRMRAESK------VGPNTRLEVVTEGILTRMIQRD-----PELSGVGLVILDEFHERSLQADLALALLLDVQQGLRD 148 (812)
T ss_pred EEEEecCccc------cCCCCcEEEEChhHHHHHHhhC-----CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCc
Confidence 5544444321 2235689999999999998754 5689999999999997 343322 2334556677888
Q ss_pred CceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEEEEEccccchHH-----HHHHHHHhhcCCCeE
Q 007402 212 GCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLL-----YILTLLKLELVQKKA 286 (605)
Q Consensus 212 ~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~~~~~k~~-----~l~~llk~~~~~~k~ 286 (605)
..|+++||||++.. .+ ..++.++.++.... . ...+.++|+.+...+++. .+..++.. ..+.+
T Consensus 149 ~lqlilmSATl~~~--~l-~~~~~~~~~I~~~g-----r---~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~--~~g~i 215 (812)
T PRK11664 149 DLKLLIMSATLDND--RL-QQLLPDAPVIVSEG-----R---SFPVERRYQPLPAHQRFDEAVARATAELLRQ--ESGSL 215 (812)
T ss_pred cceEEEEecCCCHH--HH-HHhcCCCCEEEecC-----c---cccceEEeccCchhhhHHHHHHHHHHHHHHh--CCCCE
Confidence 99999999999865 23 45666666665433 1 124778887776555543 23333332 36899
Q ss_pred EEEecchhHHHHHHHHHHH---cCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCccccccc
Q 007402 287 LIFTNTIDMAFRLKLFLEK---FGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSK 363 (605)
Q Consensus 287 IIFv~s~~~~~~L~~~L~~---~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~ 363 (605)
||||++...+..+...|+. .++.++.+||+|+..+|..+++.|.+|..+||||||+++
T Consensus 216 LVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAE------------------- 276 (812)
T PRK11664 216 LLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAE------------------- 276 (812)
T ss_pred EEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHH-------------------
Confidence 9999999999999999987 578899999999999999999999999999999999987
Q ss_pred CCCCCccccccccccccccCCccEEEEeCCCCC------------------chhHHHhhcccccCCCCccEEEEeCCchh
Q 007402 364 KHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQN------------------AAGYVHRIGRTGRAYNTGASVSLVSPDEM 425 (605)
Q Consensus 364 ~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s------------------~~~yiqRiGRtgR~g~~G~ai~~v~~~e~ 425 (605)
+|||+++|++|||+++|.. -.+|+||+||+||. .+|.|+.|+++.+.
T Consensus 277 --------------rsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~ 341 (812)
T PRK11664 277 --------------TSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQA 341 (812)
T ss_pred --------------hcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHH
Confidence 8999999999999887753 25899999999999 69999999998654
No 65
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=8.3e-36 Score=329.82 Aligned_cols=323 Identities=20% Similarity=0.215 Sum_probs=243.7
Q ss_pred CCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHH
Q 007402 44 KGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALI 123 (605)
Q Consensus 44 ~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~ 123 (605)
+|. .|+++|..+.+.++.|+ |+.++||+|||++|++|++...+. +..++|++||++||.|.++++..++
T Consensus 53 lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~--------G~~V~VvTpt~~LA~qdae~~~~l~ 121 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT--------GKGVHVVTVNDYLAQRDAEWMGQVY 121 (745)
T ss_pred hCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh--------CCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 576 79999999999998887 999999999999999999765555 3459999999999999999999999
Q ss_pred HHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchH-HHHHhcCCC--CCcccCCCceEEEEeCcchhccC----
Q 007402 124 ELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCM-PKCLSTGVL--QSKSFSDSLKILVLDEADLLLSY---- 196 (605)
Q Consensus 124 ~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l-~~~l~~~~~--~~~~~l~~l~~lViDEad~i~~~---- 196 (605)
.++ ++++..+.|+.+...++..+ .++|+|+||+++ .++++.+.. .....+..+.++||||||.|+-.
T Consensus 122 ~~L----GLsv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRt 195 (745)
T TIGR00963 122 RFL----GLSVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEART 195 (745)
T ss_pred ccC----CCeEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhh
Confidence 877 78999999998876555544 589999999999 999987631 12356788999999999987621
Q ss_pred -----C----c---HHHHHHHHhhCCC---------C-------------------------------------------
Q 007402 197 -----G----Y---EDDLKALSAVIPR---------G------------------------------------------- 212 (605)
Q Consensus 197 -----g----~---~~~l~~i~~~lp~---------~------------------------------------------- 212 (605)
| . ......+...+.. .
T Consensus 196 pLiisg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l 275 (745)
T TIGR00963 196 PLIISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKEL 275 (745)
T ss_pred HHhhcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHH
Confidence 1 0 0001111111110 0
Q ss_pred -----------------------------------------------------------------ceEEEEeeecChhHH
Q 007402 213 -----------------------------------------------------------------CQCLLMSATSSSDVD 227 (605)
Q Consensus 213 -----------------------------------------------------------------~q~il~SATl~~~v~ 227 (605)
..+.+||.|......
T Consensus 276 ~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~ 355 (745)
T TIGR00963 276 FEKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEE 355 (745)
T ss_pred HhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHH
Confidence 123445555544444
Q ss_pred HHHHHhcCCCeEEEcCCccCccccccCCCcEEEEEEccccchHHHHHHHH-HhhcCCCeEEEEecchhHHHHHHHHHHHc
Q 007402 228 KLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLL-KLELVQKKALIFTNTIDMAFRLKLFLEKF 306 (605)
Q Consensus 228 ~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~~~~~k~~~l~~ll-k~~~~~~k~IIFv~s~~~~~~L~~~L~~~ 306 (605)
++.+.|--+-+. ++. ..+....-..-.+..+..+|+..+...+ .....+.++||||+|+..++.+...|.+.
T Consensus 356 E~~~iY~l~vv~--IPt-----nkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~ 428 (745)
T TIGR00963 356 EFEKIYNLEVVV--VPT-----NRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKER 428 (745)
T ss_pred HHHHHhCCCEEE--eCC-----CCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHc
Confidence 444444322222 211 0000000011123445667876665544 34455779999999999999999999999
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCC--
Q 007402 307 GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN-- 384 (605)
Q Consensus 307 gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~-- 384 (605)
|+++.+||+. +..|...+..|..+...|+||||++. ||+||+.
T Consensus 429 gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAg---------------------------------RGtDI~l~~ 473 (745)
T TIGR00963 429 GIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAG---------------------------------RGTDIKLEE 473 (745)
T ss_pred CCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEecccc---------------------------------CCcCCCccc
Confidence 9999999999 78899999999999999999999987 9999998
Q ss_pred -----ccEEEEeCCCCCchhHHHhhcccccCCCCccEEEEeCCchh
Q 007402 385 -----VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM 425 (605)
Q Consensus 385 -----v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~~v~~~e~ 425 (605)
.-+||++++|.|...|.||+|||||.|.+|.+.+|++.+|.
T Consensus 474 V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD~ 519 (745)
T TIGR00963 474 VKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDN 519 (745)
T ss_pred hhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccHH
Confidence 55999999999999999999999999999999999998876
No 66
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=8.1e-37 Score=336.82 Aligned_cols=312 Identities=15% Similarity=0.142 Sum_probs=221.2
Q ss_pred CCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHH
Q 007402 46 IQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIEL 125 (605)
Q Consensus 46 ~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~ 125 (605)
+..|+++|.+|++.++.+++.++.||||+|||.++... ...++.. ...++||||||++|+.|+.+.+.++...
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l-~~~~~~~------~~~~vLilvpt~eL~~Q~~~~l~~~~~~ 184 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLL-SRYYLEN------YEGKVLIIVPTTSLVTQMIDDFVDYRLF 184 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHH-HHHHHhc------CCCeEEEEECcHHHHHHHHHHHHHhccc
Confidence 46899999999999999999999999999999976543 2333331 2347999999999999999999887532
Q ss_pred hcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCcHHHHHHH
Q 007402 126 CKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL 205 (605)
Q Consensus 126 ~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~~~l~~i 205 (605)
. ...+..+.++.... ..++|+|+||+++..... ..+.++++||+||||++.+. .+..+
T Consensus 185 ~----~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~-------~~~~~~~~iIvDEaH~~~~~----~~~~i 242 (501)
T PHA02558 185 P----REAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK-------EWFDQFGMVIVDECHLFTGK----SLTSI 242 (501)
T ss_pred c----ccceeEEecCcccC-------CCCCEEEeeHHHHhhchh-------hhccccCEEEEEchhcccch----hHHHH
Confidence 2 23343444443221 357999999999875432 34578999999999999764 45677
Q ss_pred HhhCCCCceEEEEeeecChhHHHHHHH-hcCCCeEEEcCCccCccccccCCCcEEEE-----------------------
Q 007402 206 SAVIPRGCQCLLMSATSSSDVDKLKKL-ILHNPYILTLPEVGDVKDEVIPKNVQQFW----------------------- 261 (605)
Q Consensus 206 ~~~lp~~~q~il~SATl~~~v~~l~~~-~l~~p~~i~l~~~~~~~~~~~~~~l~q~~----------------------- 261 (605)
+..+++..+++++|||+.+........ .+-.|+...+....-.... ....+....
T Consensus 243 l~~~~~~~~~lGLTATp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g-~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 321 (501)
T PHA02558 243 ITKLDNCKFKFGLTGSLRDGKANILQYVGLFGDIFKPVTTSQLMEEG-QVTDLKINSIFLRYPDEDRVKLKGEDYQEEIK 321 (501)
T ss_pred HHhhhccceEEEEeccCCCccccHHHHHHhhCCceEEecHHHHHhCC-CcCCceEEEEeccCCHHHhhhhcccchHHHHH
Confidence 777777789999999997643221111 1112222221110000000 000000000
Q ss_pred EEccccchHHHHHHHHH-hhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEc
Q 007402 262 ISCSERDKLLYILTLLK-LELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIAT 340 (605)
Q Consensus 262 ~~~~~~~k~~~l~~llk-~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaT 340 (605)
..+....+..++..+.. ......++||||+++++|..|...|+..|+++.++||+++..+|..+++.|+.|...|||||
T Consensus 322 ~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT 401 (501)
T PHA02558 322 YITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVAS 401 (501)
T ss_pred HHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEE
Confidence 01112223333333322 22235689999999999999999999999999999999999999999999999999999999
Q ss_pred -CCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCccEEEE
Q 007402 341 -DDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSL 419 (605)
Q Consensus 341 -d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~~ 419 (605)
+.++ +|+|+|++++||++++|.|...|+||+||++|.+..+....+
T Consensus 402 ~~~l~---------------------------------eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i 448 (501)
T PHA02558 402 YGVFS---------------------------------TGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATV 448 (501)
T ss_pred cceec---------------------------------cccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEE
Confidence 7765 899999999999999999999999999999998776654444
Q ss_pred e
Q 007402 420 V 420 (605)
Q Consensus 420 v 420 (605)
+
T Consensus 449 ~ 449 (501)
T PHA02558 449 W 449 (501)
T ss_pred E
Confidence 4
No 67
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.1e-34 Score=300.71 Aligned_cols=328 Identities=25% Similarity=0.353 Sum_probs=246.9
Q ss_pred CCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHH
Q 007402 45 GIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIE 124 (605)
Q Consensus 45 g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~ 124 (605)
+..+|+.||......++.+ +.|++.|||-|||.++++-+..++.+. .+ ++|+|+||+-|+.|.+..+.+.+.
T Consensus 12 ~~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~------~~-kvlfLAPTKPLV~Qh~~~~~~v~~ 83 (542)
T COG1111 12 NTIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWF------GG-KVLFLAPTKPLVLQHAEFCRKVTG 83 (542)
T ss_pred ccccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhc------CC-eEEEecCCchHHHHHHHHHHHHhC
Confidence 3457899999999888876 999999999999999998888777663 24 799999999999999999998875
Q ss_pred HhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhc-cCCcHHHHH
Q 007402 125 LCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLL-SYGYEDDLK 203 (605)
Q Consensus 125 ~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~-~~g~~~~l~ 203 (605)
.. .-.++.++|..+.+. +...+....|+|+||+.+.+-+..|. +++.++.++|+||||+-. +|.|-...+
T Consensus 84 ip----~~~i~~ltGev~p~~-R~~~w~~~kVfvaTPQvveNDl~~Gr----id~~dv~~lifDEAHRAvGnyAYv~Va~ 154 (542)
T COG1111 84 IP----EDEIAALTGEVRPEE-REELWAKKKVFVATPQVVENDLKAGR----IDLDDVSLLIFDEAHRAVGNYAYVFVAK 154 (542)
T ss_pred CC----hhheeeecCCCChHH-HHHHHhhCCEEEeccHHHHhHHhcCc----cChHHceEEEechhhhccCcchHHHHHH
Confidence 32 235778889887764 45566788999999999999999886 889999999999999965 455555555
Q ss_pred HHHhhCCCCceEEEEeeecChhHHHHHHHhcC---CCeEEEcCCccCccc------------------------------
Q 007402 204 ALSAVIPRGCQCLLMSATSSSDVDKLKKLILH---NPYILTLPEVGDVKD------------------------------ 250 (605)
Q Consensus 204 ~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~---~p~~i~l~~~~~~~~------------------------------ 250 (605)
..+.. .+++.++++|||+..+.+.+...+-+ .-+.+..++..++..
T Consensus 155 ~y~~~-~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~ 233 (542)
T COG1111 155 EYLRS-AKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALK 233 (542)
T ss_pred HHHHh-ccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHH
Confidence 55443 35788999999999888776654421 222332222111000
Q ss_pred -------------cccC---CC---cE--EEEEEcc-c------------------------------------------
Q 007402 251 -------------EVIP---KN---VQ--QFWISCS-E------------------------------------------ 266 (605)
Q Consensus 251 -------------~~~~---~~---l~--q~~~~~~-~------------------------------------------ 266 (605)
...+ .. +. +...... +
T Consensus 234 ~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~ 313 (542)
T COG1111 234 PRLKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEA 313 (542)
T ss_pred HHHHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHh
Confidence 0000 00 00 0000000 0
Q ss_pred ---------------------------------cchHHHHHHHHHhhc---CCCeEEEEecchhHHHHHHHHHHHcCCcE
Q 007402 267 ---------------------------------RDKLLYILTLLKLEL---VQKKALIFTNTIDMAFRLKLFLEKFGIKS 310 (605)
Q Consensus 267 ---------------------------------~~k~~~l~~llk~~~---~~~k~IIFv~s~~~~~~L~~~L~~~gi~~ 310 (605)
..|+..+..+++..+ ...++|||++.++.++.+..+|..+|+.+
T Consensus 314 ~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~ 393 (542)
T COG1111 314 TKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKA 393 (542)
T ss_pred cccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcc
Confidence 112222333333222 23499999999999999999999999887
Q ss_pred E--EE-------cCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccc
Q 007402 311 A--IL-------NAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGID 381 (605)
Q Consensus 311 ~--~l-------~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD 381 (605)
. .+ ..+|++.++..++++|++|+++|||||++++ +|+|
T Consensus 394 ~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgE---------------------------------EGLD 440 (542)
T COG1111 394 RVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGE---------------------------------EGLD 440 (542)
T ss_pred eeEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEccccc---------------------------------ccCC
Confidence 4 22 4679999999999999999999999999998 6999
Q ss_pred cCCccEEEEeCCCCCchhHHHhhcccccCCCCccEEEEeCCch
Q 007402 382 FKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE 424 (605)
Q Consensus 382 ~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~~v~~~e 424 (605)
+|.|+.||.|++-.|+..+|||.|||||. +.|.++++++...
T Consensus 441 Ip~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~gt 482 (542)
T COG1111 441 IPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEGT 482 (542)
T ss_pred CCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecCc
Confidence 99999999999999999999999999999 8999999998863
No 68
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=4.4e-35 Score=335.74 Aligned_cols=340 Identities=26% Similarity=0.312 Sum_probs=272.7
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHH
Q 007402 33 LDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELC 112 (605)
Q Consensus 33 L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa 112 (605)
.+..+..++.+.|+..++.+|.+|+..+.+|+|+||..+||||||.+|++||++.++... ..++|+|.||++|+
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~------~a~AL~lYPtnALa 128 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDP------SARALLLYPTNALA 128 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCc------CccEEEEechhhhH
Confidence 566678999999999999999999999999999999999999999999999999999853 23799999999999
Q ss_pred HHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcch
Q 007402 113 QQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADL 192 (605)
Q Consensus 113 ~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~ 192 (605)
+.+.+.+.++....+. .+.+..++|++.....+....++|+||+|||++|..++-.........++++++||+||+|.
T Consensus 129 ~DQ~~rl~~~~~~~~~--~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHt 206 (851)
T COG1205 129 NDQAERLRELISDLPG--KVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHT 206 (851)
T ss_pred hhHHHHHHHHHHhCCC--cceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEeccee
Confidence 9999999999988866 68999999999988887889999999999999999877666544556678899999999998
Q ss_pred hccCCcHH-------HHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEEEEEcc
Q 007402 193 LLSYGYED-------DLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265 (605)
Q Consensus 193 i~~~g~~~-------~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~~ 265 (605)
+-.- |.. .+..++...+...|+|++|||+.+..+...+++-.+-... +.+ ...+.....++..-+
T Consensus 207 YrGv-~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~-v~~------~g~~~~~~~~~~~~p 278 (851)
T COG1205 207 YRGV-QGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFEVP-VDE------DGSPRGLRYFVRREP 278 (851)
T ss_pred cccc-chhHHHHHHHHHHHHHhccCCCceEEEEeccccChHHHHHHhcCCcceee-ccC------CCCCCCceEEEEeCC
Confidence 6432 232 3333344456689999999999988777766665543332 332 223334444444433
Q ss_pred ---------ccchHHHHHHHHHhh-cCCCeEEEEecchhHHHHHH----HHHHHcC----CcEEEEcCCCCHHHHHHHHH
Q 007402 266 ---------ERDKLLYILTLLKLE-LVQKKALIFTNTIDMAFRLK----LFLEKFG----IKSAILNAELPQNSRLHILE 327 (605)
Q Consensus 266 ---------~~~k~~~l~~llk~~-~~~~k~IIFv~s~~~~~~L~----~~L~~~g----i~~~~l~~~l~~~~R~~i~~ 327 (605)
.......+-.+.... ...-++|+|+.+...++.+. ..+...+ ..+..++++|+..+|..+..
T Consensus 279 ~~~~~~~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~ 358 (851)
T COG1205 279 PIRELAESIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEA 358 (851)
T ss_pred cchhhhhhcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHH
Confidence 223443333333322 23569999999999999986 3333444 57889999999999999999
Q ss_pred HHHcCCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCC-CchhHHHhhcc
Q 007402 328 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQ-NAAGYVHRIGR 406 (605)
Q Consensus 328 ~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~-s~~~yiqRiGR 406 (605)
.|+.|+..++|+|..+++ |||+.+++.||....|. +..+++||+||
T Consensus 359 ~~~~g~~~~~~st~Alel---------------------------------gidiG~ldavi~~g~P~~s~~~~~Q~~GR 405 (851)
T COG1205 359 EFKEGELLGVIATNALEL---------------------------------GIDIGSLDAVIAYGYPGVSVLSFRQRAGR 405 (851)
T ss_pred HHhcCCccEEecchhhhh---------------------------------ceeehhhhhHhhcCCCCchHHHHHHhhhh
Confidence 999999999999999883 99999999999999999 89999999999
Q ss_pred cccCCCCccEEEEeC
Q 007402 407 TGRAYNTGASVSLVS 421 (605)
Q Consensus 407 tgR~g~~G~ai~~v~ 421 (605)
+||.++.+..+.++.
T Consensus 406 aGR~~~~~l~~~v~~ 420 (851)
T COG1205 406 AGRRGQESLVLVVLR 420 (851)
T ss_pred ccCCCCCceEEEEeC
Confidence 999997666666655
No 69
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=1e-34 Score=306.76 Aligned_cols=303 Identities=20% Similarity=0.246 Sum_probs=210.5
Q ss_pred HHHHHHHHHhCCCc--EEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCC
Q 007402 52 IQQASIPLILEGKD--VVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQ 129 (605)
Q Consensus 52 iQ~~aIp~~l~gkd--vlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~ 129 (605)
+|.++++.+.++.+ ++++||||||||.+|++|++.. ..++++++|+++|+.|+++.+..++..+...
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~-----------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~ 69 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG-----------ENDTIALYPTNALIEDQTEAIKEFVDVFKPE 69 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc-----------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCC
Confidence 59999999999975 7899999999999999998852 2358999999999999999999988665432
Q ss_pred cceEEEEEeCCCCHH--H------------------HHHHHcCCCcEEEECCchHHHHHhcCCCCC----cccCCCceEE
Q 007402 130 VQLKVVQLTSSMPAS--D------------------LRAALAGPPDIVIATPGCMPKCLSTGVLQS----KSFSDSLKIL 185 (605)
Q Consensus 130 ~~i~v~~l~~~~~~~--~------------------~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~----~~~l~~l~~l 185 (605)
.++.+..++|....+ . ........|+|+++||+.+..++....... ...+.+++++
T Consensus 70 ~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~i 149 (357)
T TIGR03158 70 RDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTV 149 (357)
T ss_pred CCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEE
Confidence 356777777753221 0 011123578999999999977665321111 1235789999
Q ss_pred EEeCcchhccCCcH-----HHHHHHHhhCCCCceEEEEeeecChhHHHHHHHh--cCCCeEEEcCCccCc---------c
Q 007402 186 VLDEADLLLSYGYE-----DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLI--LHNPYILTLPEVGDV---------K 249 (605)
Q Consensus 186 ViDEad~i~~~g~~-----~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~--l~~p~~i~l~~~~~~---------~ 249 (605)
||||+|.+..++.. .....++...+...++++||||+++.+....... +..|....-...-.. .
T Consensus 150 V~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~ 229 (357)
T TIGR03158 150 IFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADN 229 (357)
T ss_pred EEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccc
Confidence 99999997654321 1233344444445799999999998875554433 444543211110000 0
Q ss_pred c----cccCCCcEEEEEEccccchHHHHHHHHHhh------cCCCeEEEEecchhHHHHHHHHHHHcC--CcEEEEcCCC
Q 007402 250 D----EVIPKNVQQFWISCSERDKLLYILTLLKLE------LVQKKALIFTNTIDMAFRLKLFLEKFG--IKSAILNAEL 317 (605)
Q Consensus 250 ~----~~~~~~l~q~~~~~~~~~k~~~l~~llk~~------~~~~k~IIFv~s~~~~~~L~~~L~~~g--i~~~~l~~~l 317 (605)
. ......+.+.+.. ....+...+..+++.- ...+++|||||++..+..++..|+..+ +.+..+||.+
T Consensus 230 ~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~ 308 (357)
T TIGR03158 230 KTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFA 308 (357)
T ss_pred cccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCC
Confidence 0 0111256665555 3333333332222211 235799999999999999999999865 5788899999
Q ss_pred CHHHHHHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCc
Q 007402 318 PQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNA 397 (605)
Q Consensus 318 ~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~ 397 (605)
++..|..+ +..+||||||+++ ||||++.+ +|| ++ |.+.
T Consensus 309 ~~~~R~~~------~~~~iLVaTdv~~---------------------------------rGiDi~~~-~vi-~~-p~~~ 346 (357)
T TIGR03158 309 PKKDRERA------MQFDILLGTSTVD---------------------------------VGVDFKRD-WLI-FS-ARDA 346 (357)
T ss_pred CHHHHHHh------ccCCEEEEecHHh---------------------------------cccCCCCc-eEE-EC-CCCH
Confidence 99988654 4789999999976 89999987 666 56 8999
Q ss_pred hhHHHhhcccc
Q 007402 398 AGYVHRIGRTG 408 (605)
Q Consensus 398 ~~yiqRiGRtg 408 (605)
++|+||+||||
T Consensus 347 ~~yiqR~GR~g 357 (357)
T TIGR03158 347 AAFWQRLGRLG 357 (357)
T ss_pred HHHhhhcccCC
Confidence 99999999997
No 70
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=2.4e-35 Score=335.66 Aligned_cols=327 Identities=24% Similarity=0.319 Sum_probs=268.5
Q ss_pred HHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHH
Q 007402 39 HALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSE 118 (605)
Q Consensus 39 ~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~ 118 (605)
.....+|....++-|.+||...+.|+|+++.+|||.||+++|.+|++-. +...|||.|...|.+.+...
T Consensus 255 ~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~-----------~gitvVISPL~SLm~DQv~~ 323 (941)
T KOG0351|consen 255 LLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL-----------GGVTVVISPLISLMQDQVTH 323 (941)
T ss_pred HHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc-----------CCceEEeccHHHHHHHHHHh
Confidence 3444579999999999999999999999999999999999999998742 33699999999999887776
Q ss_pred HHHHHHHhcCCcceEEEEEeCCCCHHHHH----HHHcC--CCcEEEECCchHHHHHhcCCCCCcccCCC---ceEEEEeC
Q 007402 119 VMALIELCKGQVQLKVVQLTSSMPASDLR----AALAG--PPDIVIATPGCMPKCLSTGVLQSKSFSDS---LKILVLDE 189 (605)
Q Consensus 119 ~~~l~~~~~~~~~i~v~~l~~~~~~~~~~----~~l~~--~~dIvV~TP~~l~~~l~~~~~~~~~~l~~---l~~lViDE 189 (605)
+... +|....++++.....+. .+..+ ..+|+..||+++...-.-.. ....+.. +.++||||
T Consensus 324 L~~~--------~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~--~~~~L~~~~~lal~vIDE 393 (941)
T KOG0351|consen 324 LSKK--------GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLE--SLADLYARGLLALFVIDE 393 (941)
T ss_pred hhhc--------CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhh--HHHhccCCCeeEEEEecH
Confidence 6433 78999999988775333 33334 57899999998754221110 1123333 88999999
Q ss_pred cchhccCC--cHHHHHHHHh---hCCCCceEEEEeeecChhH--HHHHHHhcCCCeEEEcCCccCccccccCCCcEEEEE
Q 007402 190 ADLLLSYG--YEDDLKALSA---VIPRGCQCLLMSATSSSDV--DKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWI 262 (605)
Q Consensus 190 ad~i~~~g--~~~~l~~i~~---~lp~~~q~il~SATl~~~v--~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~ 262 (605)
||++..|| |+++...+.. ..|. ..+|.+|||.+..| +.+..+-+.+|.++. ......|+...+.
T Consensus 394 AHCVSqWgHdFRp~Yk~l~~l~~~~~~-vP~iALTATAT~~v~~DIi~~L~l~~~~~~~--------~sfnR~NL~yeV~ 464 (941)
T KOG0351|consen 394 AHCVSQWGHDFRPSYKRLGLLRIRFPG-VPFIALTATATERVREDVIRSLGLRNPELFK--------SSFNRPNLKYEVS 464 (941)
T ss_pred HHHhhhhcccccHHHHHHHHHHhhCCC-CCeEEeehhccHHHHHHHHHHhCCCCcceec--------ccCCCCCceEEEE
Confidence 99999998 6677666643 4443 78999999998877 446677788888664 3455667777766
Q ss_pred EccccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 007402 263 SCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 342 (605)
Q Consensus 263 ~~~~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~ 342 (605)
.-...+....+....+.......+||||.++..|+.+..+|...|+.+..+|++|+.+.|..|...|..++++|++||
T Consensus 465 ~k~~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivAT-- 542 (941)
T KOG0351|consen 465 PKTDKDALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVAT-- 542 (941)
T ss_pred eccCccchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEE--
Confidence 665566666777777777778899999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCccEEEEeCC
Q 007402 343 TQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSP 422 (605)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~~v~~ 422 (605)
.+||| |||.++|..||||.+|.|.+.|.|-+||+||.|....|++|+..
T Consensus 543 -----------------------------VAFGM--GIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~ 591 (941)
T KOG0351|consen 543 -----------------------------VAFGM--GIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGY 591 (941)
T ss_pred -----------------------------eeccC--CCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecch
Confidence 56888 99999999999999999999999999999999999999999999
Q ss_pred chhhHH
Q 007402 423 DEMKIF 428 (605)
Q Consensus 423 ~e~~~~ 428 (605)
.+...+
T Consensus 592 ~D~~~l 597 (941)
T KOG0351|consen 592 ADISEL 597 (941)
T ss_pred hHHHHH
Confidence 866433
No 71
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1.9e-35 Score=298.11 Aligned_cols=333 Identities=23% Similarity=0.306 Sum_probs=256.0
Q ss_pred HHHHHHHHH-CCCCCC-hHHHHHHHHHHhCC-CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHH
Q 007402 35 LRLVHALNK-KGIQKP-TLIQQASIPLILEG-KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTREL 111 (605)
Q Consensus 35 ~~l~~al~~-~g~~~p-t~iQ~~aIp~~l~g-kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreL 111 (605)
.++.++|++ +|+.++ ++.|++|+..+..+ +||.+++|||+||+++|.+|.+-. +.-.||+.|..+|
T Consensus 5 r~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~-----------~gITIV~SPLiAL 73 (641)
T KOG0352|consen 5 RKVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH-----------GGITIVISPLIAL 73 (641)
T ss_pred HHHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh-----------CCeEEEehHHHHH
Confidence 467788888 488775 89999999998887 699999999999999999998853 3368999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHc----CC--CcEEEECCchHHHHHhcCCCCCcccCCCceEE
Q 007402 112 CQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALA----GP--PDIVIATPGCMPKCLSTGVLQSKSFSDSLKIL 185 (605)
Q Consensus 112 a~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~----~~--~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~l 185 (605)
...+.+.+..+ .+++..+++..+......++. .. ..|++-||+....-.....++....-..|.++
T Consensus 74 IkDQiDHL~~L--------KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~ 145 (641)
T KOG0352|consen 74 IKDQIDHLKRL--------KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYI 145 (641)
T ss_pred HHHHHHHHHhc--------CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeE
Confidence 99999988877 678888888888766655443 33 46799999875433322221112334568999
Q ss_pred EEeCcchhccCC--cHHHHHHHH---hhCCCCceEEEEeeecChhHH--HHHHHhcCCCeEEEcCCccCccccccCCCcE
Q 007402 186 VLDEADLLLSYG--YEDDLKALS---AVIPRGCQCLLMSATSSSDVD--KLKKLILHNPYILTLPEVGDVKDEVIPKNVQ 258 (605)
Q Consensus 186 ViDEad~i~~~g--~~~~l~~i~---~~lp~~~q~il~SATl~~~v~--~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~ 258 (605)
|+||||++..|| |++|.-.+- +.+ .+...+.++||.+..|. ..+.+-+++|+-+--.. ....|+-
T Consensus 146 vVDEAHCVSQWGHDFRPDYL~LG~LRS~~-~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP-------~FR~NLF 217 (641)
T KOG0352|consen 146 VVDEAHCVSQWGHDFRPDYLTLGSLRSVC-PGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTP-------TFRDNLF 217 (641)
T ss_pred EechhhhHhhhccccCcchhhhhhHHhhC-CCCceEEeecccChhHHHHHHHHHhhcCcHHhccCc-------chhhhhh
Confidence 999999999998 666665553 334 36789999999999984 46678899998664322 1112221
Q ss_pred EEEE-EccccchHHHHHHHHHhhc------------CCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHH
Q 007402 259 QFWI-SCSERDKLLYILTLLKLEL------------VQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325 (605)
Q Consensus 259 q~~~-~~~~~~k~~~l~~llk~~~------------~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i 325 (605)
.-.. .-.-.|-+..|..+-...+ ..|..||||.|++.|++++..|.-.||++..+|++|...+|..+
T Consensus 218 YD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeV 297 (641)
T KOG0352|consen 218 YDNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEV 297 (641)
T ss_pred HHHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHH
Confidence 0000 0001122223332222211 24678999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhc
Q 007402 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIG 405 (605)
Q Consensus 326 ~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiG 405 (605)
.+.|-+|++.||+||.. ||| |+|-|+|.+|||+|+|.|...|.|..|
T Consensus 298 Qe~WM~~~~PvI~AT~S-------------------------------FGM--GVDKp~VRFViHW~~~qn~AgYYQESG 344 (641)
T KOG0352|consen 298 QEKWMNNEIPVIAATVS-------------------------------FGM--GVDKPDVRFVIHWSPSQNLAGYYQESG 344 (641)
T ss_pred HHHHhcCCCCEEEEEec-------------------------------ccc--ccCCcceeEEEecCchhhhHHHHHhcc
Confidence 99999999999999955 677 999999999999999999999999999
Q ss_pred ccccCCCCccEEEEeCCchhhH
Q 007402 406 RTGRAYNTGASVSLVSPDEMKI 427 (605)
Q Consensus 406 RtgR~g~~G~ai~~v~~~e~~~ 427 (605)
|+||.|....|-++++.+|...
T Consensus 345 RAGRDGk~SyCRLYYsR~D~~~ 366 (641)
T KOG0352|consen 345 RAGRDGKRSYCRLYYSRQDKNA 366 (641)
T ss_pred ccccCCCccceeeeecccchHH
Confidence 9999999999999999877643
No 72
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=2e-33 Score=326.81 Aligned_cols=329 Identities=26% Similarity=0.323 Sum_probs=239.4
Q ss_pred CCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHH
Q 007402 45 GIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIE 124 (605)
Q Consensus 45 g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~ 124 (605)
+..+|+++|.+++..++.+ |+|+++|||+|||.++++++...+. ..+.++|||+||++|+.|+.+.+..++.
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~-------~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 83 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLH-------KKGGKVLILAPTKPLVEQHAEFFRKFLN 83 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHH-------hCCCeEEEEeCcHHHHHHHHHHHHHHhC
Confidence 4457999999999999887 9999999999999999999888762 2356899999999999999999988753
Q ss_pred HhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCcHHHHHH
Q 007402 125 LCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204 (605)
Q Consensus 125 ~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~~~l~~ 204 (605)
.. ...+..++|+.+... +..+...++|+|+||+.+...+..+. ..+.++++|||||||++.+......+..
T Consensus 84 ~~----~~~v~~~~g~~~~~~-r~~~~~~~~iiv~T~~~l~~~l~~~~----~~~~~~~liVvDEaH~~~~~~~~~~i~~ 154 (773)
T PRK13766 84 IP----EEKIVVFTGEVSPEK-RAELWEKAKVIVATPQVIENDLIAGR----ISLEDVSLLIFDEAHRAVGNYAYVYIAE 154 (773)
T ss_pred CC----CceEEEEeCCCCHHH-HHHHHhCCCEEEECHHHHHHHHHcCC----CChhhCcEEEEECCccccccccHHHHHH
Confidence 21 246777888877654 44455678999999999988776654 6678899999999999875433333333
Q ss_pred HHhhCCCCceEEEEeeecChhHHHHHHH----hcC-----------------CCeE--EEcCCccCc-------------
Q 007402 205 LSAVIPRGCQCLLMSATSSSDVDKLKKL----ILH-----------------NPYI--LTLPEVGDV------------- 248 (605)
Q Consensus 205 i~~~lp~~~q~il~SATl~~~v~~l~~~----~l~-----------------~p~~--i~l~~~~~~------------- 248 (605)
......+..++++||||+......+... ++. .+.+ +.+.-....
T Consensus 155 ~~~~~~~~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~ 234 (773)
T PRK13766 155 RYHEDAKNPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKD 234 (773)
T ss_pred HHHhcCCCCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHH
Confidence 3333345678999999986443332221 111 0000 000000000
Q ss_pred -----c--ccc--cC------------CCcEEEE----------------------------------------------
Q 007402 249 -----K--DEV--IP------------KNVQQFW---------------------------------------------- 261 (605)
Q Consensus 249 -----~--~~~--~~------------~~l~q~~---------------------------------------------- 261 (605)
. ... .. ..+.+..
T Consensus 235 ~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~ 314 (773)
T PRK13766 235 RLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEA 314 (773)
T ss_pred HHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhc
Confidence 0 000 00 0000000
Q ss_pred --------------------------EEccccchHHHHHHHHHhh---cCCCeEEEEecchhHHHHHHHHHHHcCCcEEE
Q 007402 262 --------------------------ISCSERDKLLYILTLLKLE---LVQKKALIFTNTIDMAFRLKLFLEKFGIKSAI 312 (605)
Q Consensus 262 --------------------------~~~~~~~k~~~l~~llk~~---~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~ 312 (605)
....+..|+..|..+++.. ...+++||||++.+.|..|..+|...|+.+..
T Consensus 315 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~ 394 (773)
T PRK13766 315 RSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVR 394 (773)
T ss_pred cccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEE
Confidence 0001223555555555543 24679999999999999999999999999999
Q ss_pred EcCC--------CCHHHHHHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCC
Q 007402 313 LNAE--------LPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 384 (605)
Q Consensus 313 l~~~--------l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~ 384 (605)
+||. |++.+|..+++.|+.|.+++||||++++ +|+|+|+
T Consensus 395 ~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~---------------------------------eGldi~~ 441 (773)
T PRK13766 395 FVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAE---------------------------------EGLDIPS 441 (773)
T ss_pred EEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhh---------------------------------cCCCccc
Confidence 9886 9999999999999999999999999866 7999999
Q ss_pred ccEEEEeCCCCCchhHHHhhcccccCCCCccEEEEeCCch
Q 007402 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE 424 (605)
Q Consensus 385 v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~~v~~~e 424 (605)
+++||+||+|+++..|+||+||+||.|. |.++.++....
T Consensus 442 ~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~~l~~~~t 480 (773)
T PRK13766 442 VDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVVVLIAKGT 480 (773)
T ss_pred CCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEEEEEeCCC
Confidence 9999999999999999999999999865 88888887543
No 73
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=2.1e-34 Score=299.92 Aligned_cols=345 Identities=23% Similarity=0.292 Sum_probs=265.7
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHH-HhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeE
Q 007402 24 EEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPL-ILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAA 102 (605)
Q Consensus 24 ~~~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~-~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~ 102 (605)
+....+++.+++.+.+.|...|++.+.|+|..|+.. +|+|+|.++.++|+||||++.-+.=+.+++.. +.+.
T Consensus 192 ~r~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~-------g~Km 264 (830)
T COG1202 192 ERVPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSG-------GKKM 264 (830)
T ss_pred ccccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhC-------CCeE
Confidence 346788999999999999999999999999999976 78999999999999999999988888888763 5679
Q ss_pred EEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCc
Q 007402 103 LVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSL 182 (605)
Q Consensus 103 LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l 182 (605)
|+|||..+||+|-++.|..-+..++....++|...--...............||||+|++-+-.+|+.+ ..+.++
T Consensus 265 lfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-----~~lgdi 339 (830)
T COG1202 265 LFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-----KDLGDI 339 (830)
T ss_pred EEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-----Cccccc
Confidence 999999999999999999877666432233332211111100011112245799999999998888887 678899
Q ss_pred eEEEEeCcchhccCCcHHHHHHH---HhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEE
Q 007402 183 KILVLDEADLLLSYGYEDDLKAL---SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259 (605)
Q Consensus 183 ~~lViDEad~i~~~g~~~~l~~i---~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q 259 (605)
..+||||+|.+-+......+.-+ ++++-+..|+|.+|||..+.-+ +++.+-.+++.. + ..+..+..
T Consensus 340 GtVVIDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp~e-lA~~l~a~lV~y--~--------~RPVplEr 408 (830)
T COG1202 340 GTVVIDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNPEE-LAKKLGAKLVLY--D--------ERPVPLER 408 (830)
T ss_pred ceEEeeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCChHH-HHHHhCCeeEee--c--------CCCCChhH
Confidence 99999999998764333333333 2334458999999999987654 444333333322 1 12334555
Q ss_pred EEEEcc-ccchHHHHHHHHHhhc-------CCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHc
Q 007402 260 FWISCS-ERDKLLYILTLLKLEL-------VQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 331 (605)
Q Consensus 260 ~~~~~~-~~~k~~~l~~llk~~~-------~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~ 331 (605)
..+.|. +.+|+.++..+.+... .+|+||||++|+.+|..|+.+|...|+++..+|++||..+|..+...|.+
T Consensus 409 Hlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~ 488 (830)
T COG1202 409 HLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAA 488 (830)
T ss_pred eeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhc
Confidence 555554 8999999988887543 36899999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEE----eCCC-CCchhHHHhhcc
Q 007402 332 GLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN----FEMP-QNAAGYVHRIGR 406 (605)
Q Consensus 332 g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~----fd~P-~s~~~yiqRiGR 406 (605)
+++.++|+|-.++ -|+|||.-. ||+ ++.- -|+..|.|+.||
T Consensus 489 q~l~~VVTTAAL~---------------------------------AGVDFPASQ-VIFEsLaMG~~WLs~~EF~QM~GR 534 (830)
T COG1202 489 QELAAVVTTAALA---------------------------------AGVDFPASQ-VIFESLAMGIEWLSVREFQQMLGR 534 (830)
T ss_pred CCcceEeehhhhh---------------------------------cCCCCchHH-HHHHHHHcccccCCHHHHHHHhcc
Confidence 9999999998765 599999644 443 3333 389999999999
Q ss_pred cccCCC--CccEEEEeCCchh
Q 007402 407 TGRAYN--TGASVSLVSPDEM 425 (605)
Q Consensus 407 tgR~g~--~G~ai~~v~~~e~ 425 (605)
+||-+- .|.+++++.|...
T Consensus 535 AGRp~yHdrGkVyllvepg~~ 555 (830)
T COG1202 535 AGRPDYHDRGKVYLLVEPGKK 555 (830)
T ss_pred cCCCCcccCceEEEEecCChh
Confidence 999554 7889999988643
No 74
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=7.8e-33 Score=313.22 Aligned_cols=335 Identities=21% Similarity=0.259 Sum_probs=251.0
Q ss_pred CCCCHHHHHHHHHCCCCCChHHHHHHHHH-HhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcH
Q 007402 31 LGLDLRLVHALNKKGIQKPTLIQQASIPL-ILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTR 109 (605)
Q Consensus 31 ~~L~~~l~~al~~~g~~~pt~iQ~~aIp~-~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtr 109 (605)
..+++++.+-+...|+....+-|+.++.. +..++|+|+++|||||||+.+++.++..+.+. +.+++++||++
T Consensus 14 ~~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~-------~~k~vYivPlk 86 (766)
T COG1204 14 VKLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG-------GGKVVYIVPLK 86 (766)
T ss_pred ccccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc-------CCcEEEEeChH
Confidence 34889999999999998888888888865 44559999999999999999999999988763 56799999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeC
Q 007402 110 ELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDE 189 (605)
Q Consensus 110 eLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDE 189 (605)
+||.+.++.+..+..+ +++|...+|+.+.... ....++|||+||+++-..+++.. ..+..+++|||||
T Consensus 87 ALa~Ek~~~~~~~~~~-----GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~----~~~~~V~lvViDE 154 (766)
T COG1204 87 ALAEEKYEEFSRLEEL-----GIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRP----SWIEEVDLVVIDE 154 (766)
T ss_pred HHHHHHHHHhhhHHhc-----CCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCc----chhhcccEEEEee
Confidence 9999999999944432 8999999999875432 22478999999999988888764 5788999999999
Q ss_pred cchhccCCcHHHHHHHHhhCC---CCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEEEEEccc
Q 007402 190 ADLLLSYGYEDDLKALSAVIP---RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 266 (605)
Q Consensus 190 ad~i~~~g~~~~l~~i~~~lp---~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~~~ 266 (605)
+|.+.+......++.|..... ..+|++++|||+++- ..+....-.++..-..... .........+.+.....
T Consensus 155 iH~l~d~~RG~~lE~iv~r~~~~~~~~rivgLSATlpN~-~evA~wL~a~~~~~~~rp~----~l~~~v~~~~~~~~~~~ 229 (766)
T COG1204 155 IHLLGDRTRGPVLESIVARMRRLNELIRIVGLSATLPNA-EEVADWLNAKLVESDWRPV----PLRRGVPYVGAFLGADG 229 (766)
T ss_pred eeecCCcccCceehhHHHHHHhhCcceEEEEEeeecCCH-HHHHHHhCCcccccCCCCc----ccccCCccceEEEEecC
Confidence 999988755555555555443 248999999999974 4555544444431111110 11111223333333332
Q ss_pred cch-------HHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHc---------------------------------
Q 007402 267 RDK-------LLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKF--------------------------------- 306 (605)
Q Consensus 267 ~~k-------~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~--------------------------------- 306 (605)
..| ...+...+......+++||||+|+..+...+..|...
T Consensus 230 ~~k~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l 309 (766)
T COG1204 230 KKKTWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEEL 309 (766)
T ss_pred ccccccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHH
Confidence 221 2233333333344789999999999999998888731
Q ss_pred ----CCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCcccccccccccccc
Q 007402 307 ----GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDF 382 (605)
Q Consensus 307 ----gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~ 382 (605)
-..+.++|++|+...|..+.+.|+.|.++||+||.+++ .|+|+
T Consensus 310 ~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA---------------------------------~GVNL 356 (766)
T COG1204 310 AELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLA---------------------------------AGVNL 356 (766)
T ss_pred HHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHh---------------------------------hhcCC
Confidence 12356799999999999999999999999999999976 79999
Q ss_pred CCccEEE----EeC-----CCCCchhHHHhhcccccCCC--CccEEEEeCC
Q 007402 383 KNVHTVI----NFE-----MPQNAAGYVHRIGRTGRAYN--TGASVSLVSP 422 (605)
Q Consensus 383 ~~v~~VI----~fd-----~P~s~~~yiqRiGRtgR~g~--~G~ai~~v~~ 422 (605)
|.-..|| -|| .+.++-+|+|++||+||-|- .|.++.+...
T Consensus 357 PA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~ 407 (766)
T COG1204 357 PARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILATS 407 (766)
T ss_pred cceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEecC
Confidence 9866666 466 56678999999999999554 6777777733
No 75
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=4.9e-32 Score=296.13 Aligned_cols=357 Identities=22% Similarity=0.271 Sum_probs=246.1
Q ss_pred CCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHH
Q 007402 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRE 110 (605)
Q Consensus 31 ~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtre 110 (605)
-++++...+...--+.-.++.||.+.+..+| |+++|+++|||+|||.+++.-++.++-+. +..++++++||+-
T Consensus 45 ~~~~~s~~~~~~~p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~------p~~KiVF~aP~~p 117 (746)
T KOG0354|consen 45 HSLDESAAQRWIYPTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWR------PKGKVVFLAPTRP 117 (746)
T ss_pred CCCChhhhccccccCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcC------CcceEEEeeCCch
Confidence 3466666555555566678999999999999 99999999999999999999888887663 3478999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCc
Q 007402 111 LCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEA 190 (605)
Q Consensus 111 La~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEa 190 (605)
|+.|+...+..++. ...+....|++....-+..+...++|+|+||..+.+.|.++.. ..++.+.++|||||
T Consensus 118 Lv~QQ~a~~~~~~~------~~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~---~~ls~fs~iv~DE~ 188 (746)
T KOG0354|consen 118 LVNQQIACFSIYLI------PYSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLH---DELSDFSLIVFDEC 188 (746)
T ss_pred HHHHHHHHHhhccC------cccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccc---cccceEEEEEEccc
Confidence 99999866655432 2334444444333333446677899999999999999998763 23789999999999
Q ss_pred chhcc-CCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCC-----------------------CeEEEc--CC
Q 007402 191 DLLLS-YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHN-----------------------PYILTL--PE 244 (605)
Q Consensus 191 d~i~~-~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~-----------------------p~~i~l--~~ 244 (605)
|+-.. +-|...+...+..--...|++++|||+..+.+........- +..+.+ ..
T Consensus 189 Hra~kn~~Y~~Vmr~~l~~k~~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~ 268 (746)
T KOG0354|consen 189 HRTSKNHPYNNIMREYLDLKNQGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCE 268 (746)
T ss_pred ccccccccHHHHHHHHHHhhhccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhh
Confidence 99664 45677776776655555699999999987766554433211 111111 00
Q ss_pred c-------------------cCccccccCCCcE------------------EE-------------------EEE-----
Q 007402 245 V-------------------GDVKDEVIPKNVQ------------------QF-------------------WIS----- 263 (605)
Q Consensus 245 ~-------------------~~~~~~~~~~~l~------------------q~-------------------~~~----- 263 (605)
. ............. +. .+.
T Consensus 269 ~~~~~~f~~~i~p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l 348 (746)
T KOG0354|consen 269 RDIEDPFGMIIEPLLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDAL 348 (746)
T ss_pred hhhhhhHHHHHHHHHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHH
Confidence 0 0000000000000 00 000
Q ss_pred --cc----------------------------------------ccchHHHHHHHHHh---hcCCCeEEEEecchhHHHH
Q 007402 264 --CS----------------------------------------ERDKLLYILTLLKL---ELVQKKALIFTNTIDMAFR 298 (605)
Q Consensus 264 --~~----------------------------------------~~~k~~~l~~llk~---~~~~~k~IIFv~s~~~~~~ 298 (605)
+. +..|+..+..++.. .....++||||.++..|+.
T Consensus 349 ~~~~~f~~e~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~ 428 (746)
T KOG0354|consen 349 DYLEDFYEEVALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALA 428 (746)
T ss_pred hhhhhhccccchhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHH
Confidence 00 00011111111111 1123589999999999999
Q ss_pred HHHHHHH---cCCcEEEE--------cCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCcccccccCCCC
Q 007402 299 LKLFLEK---FGIKSAIL--------NAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPK 367 (605)
Q Consensus 299 L~~~L~~---~gi~~~~l--------~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (605)
|..+|.+ .|++..++ ..+|++....++++.|++|+++|||||.+++
T Consensus 429 l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~E----------------------- 485 (746)
T KOG0354|consen 429 LKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAE----------------------- 485 (746)
T ss_pred HHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchh-----------------------
Confidence 9999984 34554443 3479999999999999999999999999998
Q ss_pred CccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCccEEEEeCCchhhHHHHHHHHHhhh
Q 007402 368 AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD 438 (605)
Q Consensus 368 ~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~~v~~~e~~~~~~~~~~l~~~ 438 (605)
+|+|++.|+.||-||.-.|+...+||.|| ||+ +.|.++++++..+...++......+.+
T Consensus 486 ----------EGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~t~~~~~~~E~~~~~~e~l 544 (746)
T KOG0354|consen 486 ----------EGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTTGSEVIEFERNNLAKEKL 544 (746)
T ss_pred ----------ccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEEcchhHHHHHHHHHhHHHH
Confidence 69999999999999999999999999999 999 567888888755554444433333333
No 76
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=1.5e-30 Score=295.00 Aligned_cols=309 Identities=23% Similarity=0.210 Sum_probs=218.3
Q ss_pred CChHHHHHHHHHHhCC---CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHH
Q 007402 48 KPTLIQQASIPLILEG---KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIE 124 (605)
Q Consensus 48 ~pt~iQ~~aIp~~l~g---kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~ 124 (605)
.+|+.|+++++.++++ +++++.|+||||||.+|+.++.+.+.. +.++|||+||++|+.|+++.+.+.+
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~--------g~~vLvLvPt~~L~~Q~~~~l~~~f- 214 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ--------GKQALVLVPEIALTPQMLARFRARF- 214 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc--------CCeEEEEeCcHHHHHHHHHHHHHHh-
Confidence 5899999999999884 789999999999999999887776643 5679999999999999999998754
Q ss_pred HhcCCcceEEEEEeCCCCHHHHH----HHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCC---
Q 007402 125 LCKGQVQLKVVQLTSSMPASDLR----AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYG--- 197 (605)
Q Consensus 125 ~~~~~~~i~v~~l~~~~~~~~~~----~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g--- 197 (605)
+..+..++|+.+..... ....+.++|||+||+.+. ..+.++++|||||+|......
T Consensus 215 ------g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-----------~p~~~l~liVvDEeh~~s~~~~~~ 277 (679)
T PRK05580 215 ------GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-----------LPFKNLGLIIVDEEHDSSYKQQEG 277 (679)
T ss_pred ------CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-----------ccccCCCEEEEECCCccccccCcC
Confidence 46788888887765433 334567899999987652 346789999999999754322
Q ss_pred --c-HHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCc-EEEEEEccccc-----
Q 007402 198 --Y-EDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNV-QQFWISCSERD----- 268 (605)
Q Consensus 198 --~-~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l-~q~~~~~~~~~----- 268 (605)
| ..++. +......+.|++++|||++.+..... .-.....+.+... .....+ ....+......
T Consensus 278 p~y~~r~va-~~ra~~~~~~~il~SATps~~s~~~~--~~g~~~~~~l~~r------~~~~~~p~v~~id~~~~~~~~~~ 348 (679)
T PRK05580 278 PRYHARDLA-VVRAKLENIPVVLGSATPSLESLANA--QQGRYRLLRLTKR------AGGARLPEVEIIDMRELLRGENG 348 (679)
T ss_pred CCCcHHHHH-HHHhhccCCCEEEEcCCCCHHHHHHH--hccceeEEEeccc------cccCCCCeEEEEechhhhhhccc
Confidence 1 12332 23334567899999999885543222 1122223333321 000011 11112111100
Q ss_pred --hHHHHHHHHHhhcCC-CeEEEEecch----------------------------------------------------
Q 007402 269 --KLLYILTLLKLELVQ-KKALIFTNTI---------------------------------------------------- 293 (605)
Q Consensus 269 --k~~~l~~llk~~~~~-~k~IIFv~s~---------------------------------------------------- 293 (605)
-...++..++..+.. .++|||+|.+
T Consensus 349 ~~ls~~l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg 428 (679)
T PRK05580 349 SFLSPPLLEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECG 428 (679)
T ss_pred CCCCHHHHHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCc
Confidence 112344444444444 4899998752
Q ss_pred --------hHHHHHHHHHHHc--CCcEEEEcCCCCH--HHHHHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCccccc
Q 007402 294 --------DMAFRLKLFLEKF--GIKSAILNAELPQ--NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRK 361 (605)
Q Consensus 294 --------~~~~~L~~~L~~~--gi~~~~l~~~l~~--~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~ 361 (605)
..++++.+.|++. +.++..+|+++.. .++..++++|.+|+++|||+|++++
T Consensus 429 ~~~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~ia----------------- 491 (679)
T PRK05580 429 STDLVPVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLA----------------- 491 (679)
T ss_pred CCeeEEeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhc-----------------
Confidence 1456778888776 7889999999974 5788999999999999999999965
Q ss_pred ccCCCCCccccccccccccccCCccEEE--EeCCCCCc----------hhHHHhhcccccCCCCccEEEEeCCch
Q 007402 362 SKKHPKAKLDSEFGVVRGIDFKNVHTVI--NFEMPQNA----------AGYVHRIGRTGRAYNTGASVSLVSPDE 424 (605)
Q Consensus 362 ~~~~~~~~~~~~~gv~rGiD~~~v~~VI--~fd~P~s~----------~~yiqRiGRtgR~g~~G~ai~~v~~~e 424 (605)
+|+|||+|++|+ ++|.+.+. ..|+|++||+||++..|.++......+
T Consensus 492 ----------------kG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~ 550 (679)
T PRK05580 492 ----------------KGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPE 550 (679)
T ss_pred ----------------cCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCC
Confidence 899999999985 55555443 678999999999999999987665433
No 77
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=2.2e-31 Score=309.82 Aligned_cols=299 Identities=20% Similarity=0.252 Sum_probs=208.8
Q ss_pred HHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcC----cHHHHHHHHHHHHHHHHHhcCC
Q 007402 54 QASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVP----TRELCQQVYSEVMALIELCKGQ 129 (605)
Q Consensus 54 ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvP----treLa~Qv~~~~~~l~~~~~~~ 129 (605)
.+.+..+..++.++++|+||||||. .+|.+-.-+.. .....+++.-| +++||.|+++++..-+ +..
T Consensus 80 ~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~-----g~~g~I~~TQPRRlAArsLA~RVA~El~~~l---G~~ 149 (1294)
T PRK11131 80 QDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGR-----GVKGLIGHTQPRRLAARTVANRIAEELETEL---GGC 149 (1294)
T ss_pred HHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCC-----CCCCceeeCCCcHHHHHHHHHHHHHHHhhhh---cce
Confidence 3444455455667888999999999 57844221111 11122333346 5688888888876422 111
Q ss_pred cceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcc-hhccCCcHH-HHHHHHh
Q 007402 130 VQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD-LLLSYGYED-DLKALSA 207 (605)
Q Consensus 130 ~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad-~i~~~g~~~-~l~~i~~ 207 (605)
+++.+ ..+. .....++|+|+||++|++.+... ..++++++||||||| ++++.+|.. .+..++.
T Consensus 150 VGY~v-------rf~~---~~s~~t~I~v~TpG~LL~~l~~d-----~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~ 214 (1294)
T PRK11131 150 VGYKV-------RFND---QVSDNTMVKLMTDGILLAEIQQD-----RLLMQYDTIIIDEAHERSLNIDFILGYLKELLP 214 (1294)
T ss_pred eceee-------cCcc---ccCCCCCEEEEChHHHHHHHhcC-----CccccCcEEEecCccccccccchHHHHHHHhhh
Confidence 12221 1111 11357899999999999999865 458999999999999 578877764 3444433
Q ss_pred hCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEEEEEcccc------chHHHHHHHHH-h-
Q 007402 208 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER------DKLLYILTLLK-L- 279 (605)
Q Consensus 208 ~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~~~~------~k~~~l~~llk-~- 279 (605)
.. +..|+|+||||++. +.+.+.|...|+ +.+.. .. ..+.++|..+... +.+..++..+. .
T Consensus 215 ~r-pdlKvILmSATid~--e~fs~~F~~apv-I~V~G-----r~---~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~ 282 (1294)
T PRK11131 215 RR-PDLKVIITSATIDP--ERFSRHFNNAPI-IEVSG-----RT---YPVEVRYRPIVEEADDTERDQLQAIFDAVDELG 282 (1294)
T ss_pred cC-CCceEEEeeCCCCH--HHHHHHcCCCCE-EEEcC-----cc---ccceEEEeecccccchhhHHHHHHHHHHHHHHh
Confidence 32 36899999999974 466666665564 54433 11 2356667665432 22222222211 1
Q ss_pred hcCCCeEEEEecchhHHHHHHHHHHHcCCc---EEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCcccccccCCCCC
Q 007402 280 ELVQKKALIFTNTIDMAFRLKLFLEKFGIK---SAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGH 356 (605)
Q Consensus 280 ~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~---~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~ 356 (605)
....+.+||||++...+..+...|+..+++ +..+||+|++.+|..+++. .|..+||||||+++
T Consensus 283 ~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAE------------ 348 (1294)
T PRK11131 283 REGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAE------------ 348 (1294)
T ss_pred cCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHh------------
Confidence 234688999999999999999999988765 6789999999999999886 47889999999988
Q ss_pred cccccccCCCCCccccccccccccccCCccEEEEeC---------------CCC---CchhHHHhhcccccCCCCccEEE
Q 007402 357 VDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFE---------------MPQ---NAAGYVHRIGRTGRAYNTGASVS 418 (605)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd---------------~P~---s~~~yiqRiGRtgR~g~~G~ai~ 418 (605)
+|||+++|++|||++ +|. |..+|+||+|||||. .+|.|+.
T Consensus 349 ---------------------tSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~r 406 (1294)
T PRK11131 349 ---------------------TSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIR 406 (1294)
T ss_pred ---------------------hccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEE
Confidence 899999999999986 443 447899999999999 7999999
Q ss_pred EeCCchh
Q 007402 419 LVSPDEM 425 (605)
Q Consensus 419 ~v~~~e~ 425 (605)
|+++.+.
T Consensus 407 Lyte~d~ 413 (1294)
T PRK11131 407 LYSEDDF 413 (1294)
T ss_pred eCCHHHH
Confidence 9998654
No 78
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.98 E-value=1.3e-30 Score=254.49 Aligned_cols=202 Identities=40% Similarity=0.599 Sum_probs=182.8
Q ss_pred cccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcC
Q 007402 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVP 107 (605)
Q Consensus 28 f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvP 107 (605)
|+++++++.+.+.|.++|+..|+++|.++++.+++|+|+++.+|||+|||++|++|+++.+.... ...++++||++|
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~---~~~~~~viii~p 77 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP---KKDGPQALILAP 77 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc---ccCCceEEEEcC
Confidence 88999999999999999999999999999999999999999999999999999999999988742 124788999999
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEE
Q 007402 108 TRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVL 187 (605)
Q Consensus 108 treLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lVi 187 (605)
|++|+.|+...+..+.... ++.+..+.|+.+.......+...++|+|+||+.+..++..+. ..+.+++++|+
T Consensus 78 ~~~L~~q~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~----~~~~~l~~lIv 149 (203)
T cd00268 78 TRELALQIAEVARKLGKHT----NLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGK----LDLSKVKYLVL 149 (203)
T ss_pred CHHHHHHHHHHHHHHhccC----CceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC----CChhhCCEEEE
Confidence 9999999999998876542 678888899888777667777789999999999999998764 66788999999
Q ss_pred eCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEE
Q 007402 188 DEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL 240 (605)
Q Consensus 188 DEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i 240 (605)
||||.+.+.++...+..+...++..+|++++|||+++.+..+...++.+|+.+
T Consensus 150 DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 150 DEADRMLDMGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred eChHHhhccChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 99999999999999999999999999999999999999999999999998876
No 79
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=1.5e-29 Score=283.74 Aligned_cols=323 Identities=20% Similarity=0.237 Sum_probs=232.4
Q ss_pred CCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHH
Q 007402 44 KGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALI 123 (605)
Q Consensus 44 ~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~ 123 (605)
+|. .|+++|-..--.+.+|+ |+.++||+|||++|++|++..++. +..++|++||++||.|.++++..++
T Consensus 79 lg~-~~ydvQliGg~~Lh~G~--Iaem~TGeGKTL~a~Lpa~~~al~--------G~~V~VvTpn~yLA~qd~e~m~~l~ 147 (896)
T PRK13104 79 LGL-RHFDVQLIGGMVLHEGN--IAEMRTGEGKTLVATLPAYLNAIS--------GRGVHIVTVNDYLAKRDSQWMKPIY 147 (896)
T ss_pred cCC-CcchHHHhhhhhhccCc--cccccCCCCchHHHHHHHHHHHhc--------CCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 565 68999988776666665 999999999999999999988776 3459999999999999999999999
Q ss_pred HHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchH-HHHHhcCCCCC--cccCCCceEEEEeCcchhccC----
Q 007402 124 ELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCM-PKCLSTGVLQS--KSFSDSLKILVLDEADLLLSY---- 196 (605)
Q Consensus 124 ~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l-~~~l~~~~~~~--~~~l~~l~~lViDEad~i~~~---- 196 (605)
.++ ++++..+.|+.+...+...+ .+||+|+||+++ .++|+.+.... ......+.++||||||.|+=.
T Consensus 148 ~~l----GLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArt 221 (896)
T PRK13104 148 EFL----GLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEART 221 (896)
T ss_pred ccc----CceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCC
Confidence 877 78999999998877665554 689999999999 99998773111 112368999999999987611
Q ss_pred -----C-------cHHHHHHHHhhCCCC--------------ceEEEEe-------------------------------
Q 007402 197 -----G-------YEDDLKALSAVIPRG--------------CQCLLMS------------------------------- 219 (605)
Q Consensus 197 -----g-------~~~~l~~i~~~lp~~--------------~q~il~S------------------------------- 219 (605)
| ....+..+...+... .+.+.+|
T Consensus 222 PLIISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~ 301 (896)
T PRK13104 222 PLIISGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIML 301 (896)
T ss_pred ceeeeCCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhH
Confidence 0 112222222222111 1112222
Q ss_pred --------------------------------------------------------------------------------
Q 007402 220 -------------------------------------------------------------------------------- 219 (605)
Q Consensus 220 -------------------------------------------------------------------------------- 219 (605)
T Consensus 302 ~~~i~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~k 381 (896)
T PRK13104 302 MHHVNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNK 381 (896)
T ss_pred HHHHHHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcch
Confidence
Q ss_pred -----eecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEEEEEccccchHHHHHHHHH-hhcCCCeEEEEecch
Q 007402 220 -----ATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLK-LELVQKKALIFTNTI 293 (605)
Q Consensus 220 -----ATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~~~~~k~~~l~~llk-~~~~~~k~IIFv~s~ 293 (605)
.|....-.++.+.|--+ ++.++. ..+....-..-.+..+..+|+..+...++ .+..+.|+||||+|+
T Consensus 382 LsGMTGTa~te~~Ef~~iY~l~--Vv~IPt-----nkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Si 454 (896)
T PRK13104 382 LSGMTGTADTEAYEFQQIYNLE--VVVIPT-----NRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSI 454 (896)
T ss_pred hccCCCCChhHHHHHHHHhCCC--EEECCC-----CCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcH
Confidence 22111111111111100 000000 00000001112344556677776665543 445577999999999
Q ss_pred hHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccc
Q 007402 294 DMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSE 373 (605)
Q Consensus 294 ~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (605)
+.++.|+..|.+.|+++.+||+.+.+.+|..+.+.|+.| .|+||||++.
T Consensus 455 e~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G--~VtIATNmAG----------------------------- 503 (896)
T PRK13104 455 EASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPG--AVTIATNMAG----------------------------- 503 (896)
T ss_pred HHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCC--cEEEeccCcc-----------------------------
Confidence 999999999999999999999999999999999999999 4999999987
Q ss_pred cccccccccCCc--------------------------------------cEEEEeCCCCCchhHHHhhcccccCCCCcc
Q 007402 374 FGVVRGIDFKNV--------------------------------------HTVINFEMPQNAAGYVHRIGRTGRAYNTGA 415 (605)
Q Consensus 374 ~gv~rGiD~~~v--------------------------------------~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ 415 (605)
||+|+.=- =+||--..+.|..---|-.||+||.|.+|.
T Consensus 504 ----RGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGs 579 (896)
T PRK13104 504 ----RGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGS 579 (896)
T ss_pred ----CCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCc
Confidence 89888621 268888888888888899999999999999
Q ss_pred EEEEeCCchh
Q 007402 416 SVSLVSPDEM 425 (605)
Q Consensus 416 ai~~v~~~e~ 425 (605)
+-.|++-+|.
T Consensus 580 s~f~lSleD~ 589 (896)
T PRK13104 580 SRFYLSLEDN 589 (896)
T ss_pred eEEEEEcCcH
Confidence 9999997765
No 80
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=2.4e-29 Score=281.48 Aligned_cols=153 Identities=18% Similarity=0.236 Sum_probs=132.3
Q ss_pred cccCCCCHHHHHHHH-----HCCCCCC---hHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCC
Q 007402 28 FEELGLDLRLVHALN-----KKGIQKP---TLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLA 99 (605)
Q Consensus 28 f~~~~L~~~l~~al~-----~~g~~~p---t~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~ 99 (605)
-+.|++.+.+.+.+. .+||..| ||+|.++||.++.++|+++.|+||+|||+||++|+++.++..
T Consensus 64 ~eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g-------- 135 (970)
T PRK12899 64 PEAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTG-------- 135 (970)
T ss_pred HHHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhc--------
Confidence 467889999988887 6899999 999999999999999999999999999999999999988752
Q ss_pred CeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchH-HHHHhcCCCCCc--
Q 007402 100 PAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCM-PKCLSTGVLQSK-- 176 (605)
Q Consensus 100 ~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l-~~~l~~~~~~~~-- 176 (605)
..++||+||++||.|+++++..+..++ ++++..+.|+.+...+...+ .|||+|+||+++ .++++.+.+...
T Consensus 136 ~~v~IVTpTrELA~Qdae~m~~L~k~l----GLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~ 209 (970)
T PRK12899 136 KPVHLVTVNDYLAQRDCEWVGSVLRWL----GLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKE 209 (970)
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHHhhc----CCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHH
Confidence 238999999999999999999998876 68999999999988877665 599999999999 999998742110
Q ss_pred -ccCCCceEEEEeCcchhc
Q 007402 177 -SFSDSLKILVLDEADLLL 194 (605)
Q Consensus 177 -~~l~~l~~lViDEad~i~ 194 (605)
.....+.++||||||.|+
T Consensus 210 ~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 210 EQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred HhhcccccEEEEechhhhh
Confidence 123467899999999887
No 81
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=1.1e-30 Score=290.98 Aligned_cols=315 Identities=17% Similarity=0.221 Sum_probs=211.5
Q ss_pred CCChHHHHHHHHHHhC-C--CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHH
Q 007402 47 QKPTLIQQASIPLILE-G--KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALI 123 (605)
Q Consensus 47 ~~pt~iQ~~aIp~~l~-g--kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~ 123 (605)
..++|+|.+|+..++. | +..++++|||+|||++.+..+.. + ..++|||||+.+|+.||.+.|.+++
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~-l----------~k~tLILvps~~Lv~QW~~ef~~~~ 322 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACT-V----------KKSCLVLCTSAVSVEQWKQQFKMWS 322 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHH-h----------CCCEEEEeCcHHHHHHHHHHHHHhc
Confidence 3479999999998774 3 36899999999999987654432 2 2349999999999999999999875
Q ss_pred HHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCC----CCcccCCCceEEEEeCcchhccCCcH
Q 007402 124 ELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVL----QSKSFSDSLKILVLDEADLLLSYGYE 199 (605)
Q Consensus 124 ~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~----~~~~~l~~l~~lViDEad~i~~~g~~ 199 (605)
... ...+..++|+... ......+|+|+|++.+......... ...+.-..+.+||+||||++.+.
T Consensus 323 ~l~----~~~I~~~tg~~k~-----~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~--- 390 (732)
T TIGR00603 323 TID----DSQICRFTSDAKE-----RFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAA--- 390 (732)
T ss_pred CCC----CceEEEEecCccc-----ccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHH---
Confidence 321 2345556665321 1223468999999876533221100 00122246789999999998653
Q ss_pred HHHHHHHhhCCCCceEEEEeeecChhHHHHHHH-hcCCCeEEEcCCccCccccccCCCcEEEEEEcc-------------
Q 007402 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKL-ILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS------------- 265 (605)
Q Consensus 200 ~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~-~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~~------------- 265 (605)
.+..++..++. ...+++|||+...-.....+ ++-.|.+......+-.... ....+.-.-+.|+
T Consensus 391 -~fr~il~~l~a-~~RLGLTATP~ReD~~~~~L~~LiGP~vye~~~~eLi~~G-~LA~~~~~ev~v~~t~~~~~~yl~~~ 467 (732)
T TIGR00603 391 -MFRRVLTIVQA-HCKLGLTATLVREDDKITDLNFLIGPKLYEANWMELQKKG-FIANVQCAEVWCPMTPEFYREYLREN 467 (732)
T ss_pred -HHHHHHHhcCc-CcEEEEeecCcccCCchhhhhhhcCCeeeecCHHHHHhCC-ccccceEEEEEecCCHHHHHHHHHhc
Confidence 34455555543 34699999986432211111 1223444333221000000 0001111111111
Q ss_pred ----------ccchHHHHHHHHHhhc-CCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcC-C
Q 007402 266 ----------ERDKLLYILTLLKLEL-VQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAG-L 333 (605)
Q Consensus 266 ----------~~~k~~~l~~llk~~~-~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g-~ 333 (605)
...|+..+..+++... ...++||||++++.+..+...| + +..+||++++.+|..++++|+.| .
T Consensus 468 ~~~k~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L---~--~~~I~G~ts~~ER~~il~~Fr~~~~ 542 (732)
T TIGR00603 468 SRKRMLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL---G--KPFIYGPTSQQERMQILQNFQHNPK 542 (732)
T ss_pred chhhhHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc---C--CceEECCCCHHHHHHHHHHHHhCCC
Confidence 2234444444555432 4569999999999888887766 3 46689999999999999999875 8
Q ss_pred CcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCC-CchhHHHhhcccccCCC
Q 007402 334 FDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQ-NAAGYVHRIGRTGRAYN 412 (605)
Q Consensus 334 ~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~-s~~~yiqRiGRtgR~g~ 412 (605)
+++||+|+++. +|||+|++++||+++.|. |...|+||+||++|.+.
T Consensus 543 i~vLv~SkVgd---------------------------------eGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~ 589 (732)
T TIGR00603 543 VNTIFLSKVGD---------------------------------TSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKK 589 (732)
T ss_pred ccEEEEecccc---------------------------------cccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCC
Confidence 89999999976 799999999999999984 99999999999999988
Q ss_pred CccE-------EEEeCCchh
Q 007402 413 TGAS-------VSLVSPDEM 425 (605)
Q Consensus 413 ~G~a-------i~~v~~~e~ 425 (605)
.|.+ ++||+++..
T Consensus 590 ~~~~~~~~A~fY~lVs~dT~ 609 (732)
T TIGR00603 590 GSDAEEYNAFFYSLVSKDTQ 609 (732)
T ss_pred CCccccccceEEEEecCCch
Confidence 7765 888887654
No 82
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.97 E-value=3.5e-29 Score=287.88 Aligned_cols=336 Identities=18% Similarity=0.184 Sum_probs=218.3
Q ss_pred CChHHHHHHHHHHhCC--CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHH
Q 007402 48 KPTLIQQASIPLILEG--KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIEL 125 (605)
Q Consensus 48 ~pt~iQ~~aIp~~l~g--kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~ 125 (605)
.|.|+|..++-.++.. ..+|+...+|.|||.-+.+.+-+.++. ....++||+||+ .|+.||..++...+
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~------g~~~rvLIVvP~-sL~~QW~~El~~kF-- 222 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLT------GRAERVLILVPE-TLQHQWLVEMLRRF-- 222 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHc------CCCCcEEEEcCH-HHHHHHHHHHHHHh--
Confidence 4899999998777654 479999999999999886655554444 234579999997 89999999987654
Q ss_pred hcCCcceEEEEEeCCCCHHHHHH--HHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCC--cHHH
Q 007402 126 CKGQVQLKVVQLTSSMPASDLRA--ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYG--YEDD 201 (605)
Q Consensus 126 ~~~~~~i~v~~l~~~~~~~~~~~--~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g--~~~~ 201 (605)
++.+..+.+......... ......+++|++.+.+...-..- ....-..+++|||||||++-... -...
T Consensus 223 -----~l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~---~~l~~~~wdlvIvDEAH~lk~~~~~~s~~ 294 (956)
T PRK04914 223 -----NLRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRL---EQALAAEWDLLVVDEAHHLVWSEEAPSRE 294 (956)
T ss_pred -----CCCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHH---HHHhhcCCCEEEEechhhhccCCCCcCHH
Confidence 344444443321110000 11124689999977665311000 01222468999999999986321 1122
Q ss_pred HHHHHhhCCCCceEEEEeeecCh-hHHHHHHH-------------------------------hc-CCC-----------
Q 007402 202 LKALSAVIPRGCQCLLMSATSSS-DVDKLKKL-------------------------------IL-HNP----------- 237 (605)
Q Consensus 202 l~~i~~~lp~~~q~il~SATl~~-~v~~l~~~-------------------------------~l-~~p----------- 237 (605)
.+.+.........++++|||+-. ....+..+ ++ .++
T Consensus 295 y~~v~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ 374 (956)
T PRK04914 295 YQVVEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGE 374 (956)
T ss_pred HHHHHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHH
Confidence 33332222334568999999642 11110000 00 000
Q ss_pred ----------------------------------------eEEEcCCccCccccccCCCcEEEEEEc-------------
Q 007402 238 ----------------------------------------YILTLPEVGDVKDEVIPKNVQQFWISC------------- 264 (605)
Q Consensus 238 ----------------------------------------~~i~l~~~~~~~~~~~~~~l~q~~~~~------------- 264 (605)
+++.-.. ..+. ......+..+.+.+
T Consensus 375 ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR-~~v~-~fp~R~~~~~~l~~~~~y~~~~~~~~~ 452 (956)
T PRK04914 375 LLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTR-AAVK-GFPKRELHPIPLPLPEQYQTAIKVSLE 452 (956)
T ss_pred HhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccH-Hhhc-CCCcCceeEeecCCCHHHHHHHHHhHH
Confidence 0000000 0000 00000011111111
Q ss_pred -----------------------cccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHH-HHcCCcEEEEcCCCCHH
Q 007402 265 -----------------------SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFL-EKFGIKSAILNAELPQN 320 (605)
Q Consensus 265 -----------------------~~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L-~~~gi~~~~l~~~l~~~ 320 (605)
....|...|..+++.. ...|+||||++...+..|...| ...|++++.+||+|++.
T Consensus 453 ~~~~~~l~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~-~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~ 531 (956)
T PRK04914 453 ARARDMLYPEQIYQEFEDNATWWNFDPRVEWLIDFLKSH-RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSII 531 (956)
T ss_pred HHHHhhcCHHHHHHHHhhhhhccccCHHHHHHHHHHHhc-CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHH
Confidence 1123555666666643 3679999999999999999999 56799999999999999
Q ss_pred HHHHHHHHHHcC--CCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCch
Q 007402 321 SRLHILEEFNAG--LFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAA 398 (605)
Q Consensus 321 ~R~~i~~~F~~g--~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~ 398 (605)
+|..+++.|+++ .+.|||||++++ +|+|++.+++|||||+|+|+.
T Consensus 532 eR~~~~~~F~~~~~~~~VLIsTdvgs---------------------------------eGlNlq~a~~VInfDlP~nP~ 578 (956)
T PRK04914 532 ERDRAAAYFADEEDGAQVLLCSEIGS---------------------------------EGRNFQFASHLVLFDLPFNPD 578 (956)
T ss_pred HHHHHHHHHhcCCCCccEEEechhhc---------------------------------cCCCcccccEEEEecCCCCHH
Confidence 999999999984 599999999865 899999999999999999999
Q ss_pred hHHHhhcccccCCCCccEEEEeCCchhhHHHHHHHHHh
Q 007402 399 GYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436 (605)
Q Consensus 399 ~yiqRiGRtgR~g~~G~ai~~v~~~e~~~~~~~~~~l~ 436 (605)
.|+||+||++|.|++|.+.+++...+...-..+.+++.
T Consensus 579 ~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~ 616 (956)
T PRK04914 579 LLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYH 616 (956)
T ss_pred HHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHh
Confidence 99999999999999998877776655544444444443
No 83
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.97 E-value=9e-30 Score=253.45 Aligned_cols=342 Identities=21% Similarity=0.276 Sum_probs=260.6
Q ss_pred cCcccCCCCHHHHHHHHH-CCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEE
Q 007402 26 KSFEELGLDLRLVHALNK-KGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALV 104 (605)
Q Consensus 26 ~~f~~~~L~~~l~~al~~-~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~Li 104 (605)
.+=++|+++...-.-|.+ +..+.++|.|..+|...+.|+|+++..|||.||+++|.+|++-. ...+||
T Consensus 71 wdkd~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a-----------dg~alv 139 (695)
T KOG0353|consen 71 WDKDDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA-----------DGFALV 139 (695)
T ss_pred cccCCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc-----------CCceEe
Confidence 334588898887777666 47788999999999999999999999999999999999998842 456999
Q ss_pred EcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHH---H---cCCCcEEEECCchHHHHHh-cCCCCCcc
Q 007402 105 LVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAA---L---AGPPDIVIATPGCMPKCLS-TGVLQSKS 177 (605)
Q Consensus 105 lvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~---l---~~~~dIvV~TP~~l~~~l~-~~~~~~~~ 177 (605)
++|...|.+.+.-+++++ +|....+..+.+.+..... + ......++.||+.+...-. -+.+....
T Consensus 140 i~plislmedqil~lkql--------gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~ 211 (695)
T KOG0353|consen 140 ICPLISLMEDQILQLKQL--------GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKAL 211 (695)
T ss_pred echhHHHHHHHHHHHHHh--------CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHh
Confidence 999999999888888877 5666666666665433221 1 1346789999998753211 00111124
Q ss_pred cCCCceEEEEeCcchhccCC--cHHHHHHH--HhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCcccccc
Q 007402 178 FSDSLKILVLDEADLLLSYG--YEDDLKAL--SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVI 253 (605)
Q Consensus 178 ~l~~l~~lViDEad~i~~~g--~~~~l~~i--~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~ 253 (605)
....+..+.|||+|+...|| |+.+...+ ++.--++..+++++||.++.|-.-.+..+.-...+.+. ....
T Consensus 212 ~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~------a~fn 285 (695)
T KOG0353|consen 212 EAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFR------AGFN 285 (695)
T ss_pred hcceeEEEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheee------cccC
Confidence 45668899999999999997 56665543 44444578899999999887744333332211112211 1223
Q ss_pred CCCcEEEEEEcc--ccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHc
Q 007402 254 PKNVQQFWISCS--ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 331 (605)
Q Consensus 254 ~~~l~q~~~~~~--~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~ 331 (605)
..++...+..-+ +++-..-+..+++....+...||||-+...|+.+...|+..||.+..+|+.|.+.+|.-+-+.|-.
T Consensus 286 r~nl~yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a 365 (695)
T KOG0353|consen 286 RPNLKYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIA 365 (695)
T ss_pred CCCceeEeeeCCCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccc
Confidence 345554444333 445556666666666666788999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHH---------
Q 007402 332 GLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVH--------- 402 (605)
Q Consensus 332 g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiq--------- 402 (605)
|+++|+||| -+||| |||-|+|++|||..+|.|++.|.|
T Consensus 366 ~eiqvivat-------------------------------vafgm--gidkpdvrfvihhsl~ksienyyqasarillrm 412 (695)
T KOG0353|consen 366 GEIQVIVAT-------------------------------VAFGM--GIDKPDVRFVIHHSLPKSIENYYQASARILLRM 412 (695)
T ss_pred cceEEEEEE-------------------------------eeecc--cCCCCCeeEEEecccchhHHHHHHHHHHHHHHH
Confidence 999999999 45777 999999999999999999999999
Q ss_pred ----------------------------------hhcccccCCCCccEEEEeCCchh
Q 007402 403 ----------------------------------RIGRTGRAYNTGASVSLVSPDEM 425 (605)
Q Consensus 403 ----------------------------------RiGRtgR~g~~G~ai~~v~~~e~ 425 (605)
..||+||.+.+..||+++.-.+.
T Consensus 413 tkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~di 469 (695)
T KOG0353|consen 413 TKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADI 469 (695)
T ss_pred hhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechHHH
Confidence 67999999999999999976543
No 84
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=6.8e-30 Score=281.82 Aligned_cols=344 Identities=17% Similarity=0.218 Sum_probs=251.9
Q ss_pred HHCCCCCChHHHHHHHHHHhCC-CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCC--CCCCCeEEEEcCcHHHHHHHHHH
Q 007402 42 NKKGIQKPTLIQQASIPLILEG-KDVVARAKTGSGKTFAYLLPLLHRLFNESSPK--SKLAPAALVLVPTRELCQQVYSE 118 (605)
Q Consensus 42 ~~~g~~~pt~iQ~~aIp~~l~g-kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~--~~~~~~~LilvPtreLa~Qv~~~ 118 (605)
.-++|..+..+|+.++|.+-.. .+.||+||||||||-.|++.|++.|-...... ...+.++++++|+++||..+++.
T Consensus 104 ~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~ 183 (1230)
T KOG0952|consen 104 GFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDK 183 (1230)
T ss_pred hcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHH
Confidence 3468889999999999998876 69999999999999999999999877522111 45688999999999999999988
Q ss_pred HHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCc
Q 007402 119 VMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGY 198 (605)
Q Consensus 119 ~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~ 198 (605)
+.+-+..+ +++|.-++|++...... ...++|||+||+++ +.+.+........++.+++|||||+|++-+. .
T Consensus 184 ~~kkl~~~----gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKw-DvvTRk~~~d~~l~~~V~LviIDEVHlLhd~-R 254 (1230)
T KOG0952|consen 184 FSKKLAPL----GISVRELTGDTQLTKTE---IADTQIIVTTPEKW-DVVTRKSVGDSALFSLVRLVIIDEVHLLHDD-R 254 (1230)
T ss_pred Hhhhcccc----cceEEEecCcchhhHHH---HHhcCEEEecccce-eeeeeeeccchhhhhheeeEEeeeehhhcCc-c
Confidence 87766544 79999999998654333 23689999999997 3333333223456688999999999998765 3
Q ss_pred HHHHHHHHhh-------CCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEEEEEcccc---c
Q 007402 199 EDDLKALSAV-------IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER---D 268 (605)
Q Consensus 199 ~~~l~~i~~~-------lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~~~~---~ 268 (605)
...++.|+.. ......++++|||+|+-.+--..+-.+-+.-+..-+ ....+..+.+.++-+... .
T Consensus 255 GpvlEtiVaRtlr~vessqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd-----~~yRPvpL~~~~iG~k~~~~~~ 329 (1230)
T KOG0952|consen 255 GPVLETIVARTLRLVESSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFD-----QRYRPVPLTQGFIGIKGKKNRQ 329 (1230)
T ss_pred cchHHHHHHHHHHHHHhhhhheEEEEeeccCCCHHHHHHHhcCCCccceeeec-----ccccccceeeeEEeeecccchh
Confidence 5555555543 235678999999999765443322222123232222 345566778877766544 1
Q ss_pred hHH-----HHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHc-----------------------CCcEEEEcCCCCHH
Q 007402 269 KLL-----YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKF-----------------------GIKSAILNAELPQN 320 (605)
Q Consensus 269 k~~-----~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~-----------------------gi~~~~l~~~l~~~ 320 (605)
+.. ......+....+.+++|||.++..+.+.+.+|.+. .....++|++|+..
T Consensus 330 ~~~~~d~~~~~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~ 409 (1230)
T KOG0952|consen 330 QKKNIDEVCYDKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRS 409 (1230)
T ss_pred hhhhHHHHHHHHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchh
Confidence 111 11122233334679999999999999999888653 12356789999999
Q ss_pred HHHHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEE----eCCCC-
Q 007402 321 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN----FEMPQ- 395 (605)
Q Consensus 321 ~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~----fd~P~- 395 (605)
+|..+...|..|.+.||+||..++ .|+++|.-..+|- ||.-.
T Consensus 410 DR~l~E~~F~~G~i~vL~cTaTLA---------------------------------wGVNLPA~aViIKGT~~ydsskg 456 (1230)
T KOG0952|consen 410 DRQLVEKEFKEGHIKVLCCTATLA---------------------------------WGVNLPAYAVIIKGTQVYDSSKG 456 (1230)
T ss_pred hHHHHHHHHhcCCceEEEecceee---------------------------------eccCCcceEEEecCCcccccccC
Confidence 999999999999999999999976 7999998666652 44332
Q ss_pred -----CchhHHHhhccccc--CCCCccEEEEeCCchhhHHHHHH
Q 007402 396 -----NAAGYVHRIGRTGR--AYNTGASVSLVSPDEMKIFEEIK 432 (605)
Q Consensus 396 -----s~~~yiqRiGRtgR--~g~~G~ai~~v~~~e~~~~~~~~ 432 (605)
++-..+|.+||+|| ++..|.++.+-+.+...++..+.
T Consensus 457 ~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl 500 (1230)
T KOG0952|consen 457 SFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLL 500 (1230)
T ss_pred ceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHHH
Confidence 35677999999999 77899999998887665555443
No 85
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=2.8e-28 Score=273.37 Aligned_cols=323 Identities=22% Similarity=0.221 Sum_probs=241.5
Q ss_pred CCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHH
Q 007402 44 KGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALI 123 (605)
Q Consensus 44 ~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~ 123 (605)
+|. .|+++|--.--.+.+|+ |+.++||+|||+++.+|++-..+. +..+-|++||.+||.|.++++..++
T Consensus 78 lg~-~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~--------G~~V~IvTpn~yLA~rd~e~~~~l~ 146 (830)
T PRK12904 78 LGM-RHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALT--------GKGVHVVTVNDYLAKRDAEWMGPLY 146 (830)
T ss_pred hCC-CCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHc--------CCCEEEEecCHHHHHHHHHHHHHHH
Confidence 576 79999988887777775 999999999999999999755554 3347799999999999999999999
Q ss_pred HHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchH-HHHHhcCCCCC--cccCCCceEEEEeCcchhccCC---
Q 007402 124 ELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCM-PKCLSTGVLQS--KSFSDSLKILVLDEADLLLSYG--- 197 (605)
Q Consensus 124 ~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l-~~~l~~~~~~~--~~~l~~l~~lViDEad~i~~~g--- 197 (605)
.++ ++++..+.|+.+...++..+ .+||+++||+++ .++|+.+.... ...+..+.++||||||.|+=..
T Consensus 147 ~~L----Glsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArt 220 (830)
T PRK12904 147 EFL----GLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEART 220 (830)
T ss_pred hhc----CCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCC
Confidence 887 79999999999888777765 489999999999 99998764211 2346789999999999876110
Q ss_pred -------------cHHHHHHHHhhCCCC----------------------------------------------------
Q 007402 198 -------------YEDDLKALSAVIPRG---------------------------------------------------- 212 (605)
Q Consensus 198 -------------~~~~l~~i~~~lp~~---------------------------------------------------- 212 (605)
....+..+...+...
T Consensus 221 pLiiSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l 300 (830)
T PRK12904 221 PLIISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHEL 300 (830)
T ss_pred ceeeECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHH
Confidence 112222333322110
Q ss_pred -----------------------------------------------------------------ceEEEEeeecChhHH
Q 007402 213 -----------------------------------------------------------------CQCLLMSATSSSDVD 227 (605)
Q Consensus 213 -----------------------------------------------------------------~q~il~SATl~~~v~ 227 (605)
..+.+||.|......
T Consensus 301 ~~~d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~ 380 (830)
T PRK12904 301 FKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAE 380 (830)
T ss_pred HhcCCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHH
Confidence 123445555544444
Q ss_pred HHHHHhcCCCeEEEcCCccCccccccCCCcEEEEEEccccchHHHHHHHHHh-hcCCCeEEEEecchhHHHHHHHHHHHc
Q 007402 228 KLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKL-ELVQKKALIFTNTIDMAFRLKLFLEKF 306 (605)
Q Consensus 228 ~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~~~~~k~~~l~~llk~-~~~~~k~IIFv~s~~~~~~L~~~L~~~ 306 (605)
++.+.|--+- +.++. ..+....-..-.+..+..+|+..+...+.. .....++||||+|++.++.|...|.+.
T Consensus 381 E~~~iY~l~v--v~IPt-----nkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~ 453 (830)
T PRK12904 381 EFREIYNLDV--VVIPT-----NRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKA 453 (830)
T ss_pred HHHHHhCCCE--EEcCC-----CCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC
Confidence 4444442221 12211 000000011123444667788887777754 344669999999999999999999999
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCc-
Q 007402 307 GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV- 385 (605)
Q Consensus 307 gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v- 385 (605)
|+++.+||+. +..|...+..|..+...|+||||++. ||+||+--
T Consensus 454 gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAG---------------------------------RGtDI~LgG 498 (830)
T PRK12904 454 GIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAG---------------------------------RGTDIKLGG 498 (830)
T ss_pred CCceEeccCc--hHHHHHHHHHhcCCCceEEEeccccc---------------------------------CCcCccCCC
Confidence 9999999995 78999999999999999999999987 89998642
Q ss_pred -------------------------------------cEEEEeCCCCCchhHHHhhcccccCCCCccEEEEeCCchh
Q 007402 386 -------------------------------------HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM 425 (605)
Q Consensus 386 -------------------------------------~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~~v~~~e~ 425 (605)
=+||--..|.|..---|-.||+||.|.+|.+-.|++-+|.
T Consensus 499 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD~ 575 (830)
T PRK12904 499 NPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 575 (830)
T ss_pred chhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCcH
Confidence 2688888899999999999999999999999999997765
No 86
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=1.2e-28 Score=275.24 Aligned_cols=323 Identities=23% Similarity=0.255 Sum_probs=237.1
Q ss_pred CCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHH
Q 007402 44 KGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALI 123 (605)
Q Consensus 44 ~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~ 123 (605)
+|. .|+++|--+--.+..|+ |+.+.||+|||+++.+|++...+. |..+-|++||..||.|-++.+..++
T Consensus 77 ~g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~--------G~~v~vvT~neyLA~Rd~e~~~~~~ 145 (796)
T PRK12906 77 LGL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT--------GKGVHVVTVNEYLSSRDATEMGELY 145 (796)
T ss_pred hCC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc--------CCCeEEEeccHHHHHhhHHHHHHHH
Confidence 575 79999988877777776 999999999999999999988877 6669999999999999999999999
Q ss_pred HHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchH-HHHHhcCCCC--CcccCCCceEEEEeCcchhccC----
Q 007402 124 ELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCM-PKCLSTGVLQ--SKSFSDSLKILVLDEADLLLSY---- 196 (605)
Q Consensus 124 ~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l-~~~l~~~~~~--~~~~l~~l~~lViDEad~i~~~---- 196 (605)
.++ ++++..+.++.+....+..+ .+||+++|...+ .++|+.+... .......+.+.||||+|.++=.
T Consensus 146 ~~L----Gl~vg~i~~~~~~~~r~~~y--~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeart 219 (796)
T PRK12906 146 RWL----GLTVGLNLNSMSPDEKRAAY--NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEART 219 (796)
T ss_pred Hhc----CCeEEEeCCCCCHHHHHHHh--cCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCC
Confidence 988 78999999988877666555 679999999876 3455543211 1234467889999999976511
Q ss_pred -----C-------cHHHHHHHHhhCCC--------------------C--------------------------------
Q 007402 197 -----G-------YEDDLKALSAVIPR--------------------G-------------------------------- 212 (605)
Q Consensus 197 -----g-------~~~~l~~i~~~lp~--------------------~-------------------------------- 212 (605)
| ....+..+...+.. .
T Consensus 220 PLiisg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~ 299 (796)
T PRK12906 220 PLIISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAH 299 (796)
T ss_pred ceecCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHH
Confidence 0 11111222221110 0
Q ss_pred ----------------------------------------------------------------------------ceEE
Q 007402 213 ----------------------------------------------------------------------------CQCL 216 (605)
Q Consensus 213 ----------------------------------------------------------------------------~q~i 216 (605)
.++.
T Consensus 300 ~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~ 379 (796)
T PRK12906 300 HIDQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLS 379 (796)
T ss_pred HHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhh
Confidence 0223
Q ss_pred EEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEEEEEccccchHHHHHHHHHh-hcCCCeEEEEecchhH
Q 007402 217 LMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKL-ELVQKKALIFTNTIDM 295 (605)
Q Consensus 217 l~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~~~~~k~~~l~~llk~-~~~~~k~IIFv~s~~~ 295 (605)
+||.|...+-.++.+.|--+ ++.++. ..+....-..-.+..+..+|+..+...+.. .....++||||+|+..
T Consensus 380 GmTGTa~~e~~Ef~~iY~l~--vv~IPt-----nkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~ 452 (796)
T PRK12906 380 GMTGTAKTEEEEFREIYNME--VITIPT-----NRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIES 452 (796)
T ss_pred ccCCCCHHHHHHHHHHhCCC--EEEcCC-----CCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHH
Confidence 34444433333333322211 111111 000000011122344556788777776653 3456799999999999
Q ss_pred HHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccc
Q 007402 296 AFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFG 375 (605)
Q Consensus 296 ~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 375 (605)
++.|+..|.+.|+++.+||+.+...++..+.+.+..|. |+|||+++.
T Consensus 453 se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAG------------------------------- 499 (796)
T PRK12906 453 SERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAG------------------------------- 499 (796)
T ss_pred HHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEecccc-------------------------------
Confidence 99999999999999999999999888888888888886 999999987
Q ss_pred cccccccC---Ccc-----EEEEeCCCCCchhHHHhhcccccCCCCccEEEEeCCchh
Q 007402 376 VVRGIDFK---NVH-----TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM 425 (605)
Q Consensus 376 v~rGiD~~---~v~-----~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~~v~~~e~ 425 (605)
||+||+ +|. +||++++|.|...|.|++|||||.|.+|.+..|++.+|.
T Consensus 500 --RGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD~ 555 (796)
T PRK12906 500 --RGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 555 (796)
T ss_pred --CCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEeccch
Confidence 999995 899 999999999999999999999999999999999998765
No 87
>PRK09694 helicase Cas3; Provisional
Probab=99.96 E-value=7.4e-28 Score=275.41 Aligned_cols=319 Identities=21% Similarity=0.217 Sum_probs=206.9
Q ss_pred CCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHH
Q 007402 46 IQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIEL 125 (605)
Q Consensus 46 ~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~ 125 (605)
..+|+|+|+.+........-+|+.||||+|||.|++..+. .++.. ....+++|..||+++++|+++++..++..
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~-~l~~~-----~~~~gi~~aLPT~Atan~m~~Rl~~~~~~ 357 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAW-RLIDQ-----GLADSIIFALPTQATANAMLSRLEALASK 357 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHH-HHHHh-----CCCCeEEEECcHHHHHHHHHHHHHHHHHH
Confidence 3479999998865544556789999999999999877655 44432 22467999999999999999999886654
Q ss_pred hcCCcceEEEEEeCCCCHHHH---------------------HHHHcC------CCcEEEECCchHHHHHhcCCCCCccc
Q 007402 126 CKGQVQLKVVQLTSSMPASDL---------------------RAALAG------PPDIVIATPGCMPKCLSTGVLQSKSF 178 (605)
Q Consensus 126 ~~~~~~i~v~~l~~~~~~~~~---------------------~~~l~~------~~dIvV~TP~~l~~~l~~~~~~~~~~ 178 (605)
... ...+..++|....... ...+.+ -.+|+|||++.++..+.... ...
T Consensus 358 ~f~--~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~k---h~~ 432 (878)
T PRK09694 358 LFP--SPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVK---HRF 432 (878)
T ss_pred hcC--CCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccc---hHH
Confidence 322 2345555554321100 011211 15899999988875444321 122
Q ss_pred CCC----ceEEEEeCcchhccCCcHHHHHHHHhhCC-CCceEEEEeeecChhHH-HHHHHhcCC-Ce-------EEEcCC
Q 007402 179 SDS----LKILVLDEADLLLSYGYEDDLKALSAVIP-RGCQCLLMSATSSSDVD-KLKKLILHN-PY-------ILTLPE 244 (605)
Q Consensus 179 l~~----l~~lViDEad~i~~~g~~~~l~~i~~~lp-~~~q~il~SATl~~~v~-~l~~~~l~~-p~-------~i~l~~ 244 (605)
+.. -++|||||+|.+-.+ ....+..+++.+. .+..+|+||||+|.... .|...+-.. +. .+....
T Consensus 433 lR~~~La~svvIiDEVHAyD~y-m~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~ 511 (878)
T PRK09694 433 IRGFGLGRSVLIVDEVHAYDAY-MYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRG 511 (878)
T ss_pred HHHHhhccCeEEEechhhCCHH-HHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccc
Confidence 222 248999999987443 3345555655442 36789999999998764 344443211 10 000000
Q ss_pred ccCcccc---------ccCCCcEEEEEEccc-cchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcC---CcEE
Q 007402 245 VGDVKDE---------VIPKNVQQFWISCSE-RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFG---IKSA 311 (605)
Q Consensus 245 ~~~~~~~---------~~~~~l~q~~~~~~~-~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~g---i~~~ 311 (605)
....... .....+.-....... .....++..+++.....+++||||||++.|..++..|+..+ ..+.
T Consensus 512 ~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~ 591 (878)
T PRK09694 512 VNGAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDID 591 (878)
T ss_pred cccceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEE
Confidence 0000000 000011110111111 11223333344333346789999999999999999998765 6799
Q ss_pred EEcCCCCHHHHH----HHHHHH-HcCC---CcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccC
Q 007402 312 ILNAELPQNSRL----HILEEF-NAGL---FDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 383 (605)
Q Consensus 312 ~l~~~l~~~~R~----~i~~~F-~~g~---~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~ 383 (605)
.+||.++..+|. .+++.| ++|. ..|||||++.+ +|||+
T Consensus 592 llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE---------------------------------~GLDI- 637 (878)
T PRK09694 592 LFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVE---------------------------------QSLDL- 637 (878)
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchh---------------------------------heeec-
Confidence 999999999994 567788 5565 47999999987 89999
Q ss_pred CccEEEEeCCCCCchhHHHhhcccccCCC
Q 007402 384 NVHTVINFEMPQNAAGYVHRIGRTGRAYN 412 (605)
Q Consensus 384 ~v~~VI~fd~P~s~~~yiqRiGRtgR~g~ 412 (605)
+++++|....| .++|+||+||++|.+.
T Consensus 638 d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 638 DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 68999998888 6899999999999876
No 88
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.96 E-value=2.3e-28 Score=285.70 Aligned_cols=314 Identities=19% Similarity=0.199 Sum_probs=216.4
Q ss_pred HCCCCCChHHHH--HHHHHHhC-CCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHH
Q 007402 43 KKGIQKPTLIQQ--ASIPLILE-GKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEV 119 (605)
Q Consensus 43 ~~g~~~pt~iQ~--~aIp~~l~-gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~ 119 (605)
...|...-|+.+ ..|..+++ ++.+|+.|+||||||. .+|.+- +.... .....+++.-|.|--|..++..+
T Consensus 59 ~~~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTT--qlPq~l--le~~~---~~~~~I~~tQPRRlAA~svA~Rv 131 (1283)
T TIGR01967 59 EIRYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTT--QLPKIC--LELGR---GSHGLIGHTQPRRLAARTVAQRI 131 (1283)
T ss_pred cccCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHH--HHHHHH--HHcCC---CCCceEecCCccHHHHHHHHHHH
Confidence 456766677765 45555554 4667899999999998 567543 22111 11234555668887777777766
Q ss_pred HHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcc-hhccCCc
Q 007402 120 MALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD-LLLSYGY 198 (605)
Q Consensus 120 ~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad-~i~~~g~ 198 (605)
..... ...+-.|..-... +.+ .+....|+++||++|+..+... ..++.+++||||||| +.++.++
T Consensus 132 A~elg---~~lG~~VGY~vR~---~~~---~s~~T~I~~~TdGiLLr~l~~d-----~~L~~~~~IIIDEaHERsL~~D~ 197 (1283)
T TIGR01967 132 AEELG---TPLGEKVGYKVRF---HDQ---VSSNTLVKLMTDGILLAETQQD-----RFLSRYDTIIIDEAHERSLNIDF 197 (1283)
T ss_pred HHHhC---CCcceEEeeEEcC---Ccc---cCCCceeeeccccHHHHHhhhC-----cccccCcEEEEcCcchhhccchh
Confidence 65432 1112222211111 111 2346789999999999998764 458899999999999 5888776
Q ss_pred HHH-HHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEEEEEccc------cchHH
Q 007402 199 EDD-LKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE------RDKLL 271 (605)
Q Consensus 199 ~~~-l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~~~------~~k~~ 271 (605)
.-. +..++...| ..|+|+||||++. +.+.+.|...|+ +.+.. . . -.+..+|..+.. .++..
T Consensus 198 LL~lLk~il~~rp-dLKlIlmSATld~--~~fa~~F~~apv-I~V~G-----r-~--~PVev~Y~~~~~~~~~~~~~~~~ 265 (1283)
T TIGR01967 198 LLGYLKQLLPRRP-DLKIIITSATIDP--ERFSRHFNNAPI-IEVSG-----R-T--YPVEVRYRPLVEEQEDDDLDQLE 265 (1283)
T ss_pred HHHHHHHHHhhCC-CCeEEEEeCCcCH--HHHHHHhcCCCE-EEECC-----C-c--ccceeEEecccccccchhhhHHH
Confidence 643 666655544 6899999999974 567776655554 44433 1 1 134455544321 12333
Q ss_pred HHHHHHHh--hcCCCeEEEEecchhHHHHHHHHHHHcCC---cEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCcc
Q 007402 272 YILTLLKL--ELVQKKALIFTNTIDMAFRLKLFLEKFGI---KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTK 346 (605)
Q Consensus 272 ~l~~llk~--~~~~~k~IIFv~s~~~~~~L~~~L~~~gi---~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~ 346 (605)
.+...+.. ....|.+|||+++...+..+...|+..+. .+..|||.|+..+|..+++.+ +..+||||||+++
T Consensus 266 ~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAE-- 341 (1283)
T TIGR01967 266 AILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAE-- 341 (1283)
T ss_pred HHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHH--
Confidence 33322221 12358999999999999999999998754 578899999999999986654 3469999999988
Q ss_pred cccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCC------------------CchhHHHhhcccc
Q 007402 347 EKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQ------------------NAAGYVHRIGRTG 408 (605)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~------------------s~~~yiqRiGRtg 408 (605)
+|||+++|.+||+++++. |..+|+||.||||
T Consensus 342 -------------------------------tSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAG 390 (1283)
T TIGR01967 342 -------------------------------TSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCG 390 (1283)
T ss_pred -------------------------------hccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhC
Confidence 899999999999999543 4579999999999
Q ss_pred cCCCCccEEEEeCCchh
Q 007402 409 RAYNTGASVSLVSPDEM 425 (605)
Q Consensus 409 R~g~~G~ai~~v~~~e~ 425 (605)
|.+ +|.|+.|++..+.
T Consensus 391 R~~-~G~cyRLyte~~~ 406 (1283)
T TIGR01967 391 RVA-PGICIRLYSEEDF 406 (1283)
T ss_pred CCC-CceEEEecCHHHH
Confidence 997 9999999997654
No 89
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.96 E-value=2e-27 Score=260.65 Aligned_cols=291 Identities=23% Similarity=0.250 Sum_probs=196.5
Q ss_pred EEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHH
Q 007402 67 VARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146 (605)
Q Consensus 67 lv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~ 146 (605)
|+.|+||||||.+|+..+.+.+.. +.++||++|+++|+.|+++.+++.+ +..+..++++.+....
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~--------g~~vLvlvP~i~L~~Q~~~~l~~~f-------~~~v~vlhs~~~~~er 65 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL--------GKSVLVLVPEIALTPQMIQRFKYRF-------GSQVAVLHSGLSDSEK 65 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc--------CCeEEEEeCcHHHHHHHHHHHHHHh-------CCcEEEEECCCCHHHH
Confidence 468999999999997665444322 5679999999999999999998754 4567778888765442
Q ss_pred ----HHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCC-----c-HHHHHHHHhhCCCCceEE
Q 007402 147 ----RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYG-----Y-EDDLKALSAVIPRGCQCL 216 (605)
Q Consensus 147 ----~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g-----~-~~~l~~i~~~lp~~~q~i 216 (605)
.....+.++|||+|++.+. ..+.++++|||||+|....++ | ..++....... .+.+++
T Consensus 66 ~~~~~~~~~g~~~IVVGTrsalf-----------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~-~~~~vi 133 (505)
T TIGR00595 66 LQAWRKVKNGEILVVIGTRSALF-----------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKK-FNCPVV 133 (505)
T ss_pred HHHHHHHHcCCCCEEECChHHHc-----------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHh-cCCCEE
Confidence 3334467899999987552 346789999999999866332 1 12333333333 478999
Q ss_pred EEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEEEEEccccch----HHHHHHHHHhhcC-CCeEEEEec
Q 007402 217 LMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDK----LLYILTLLKLELV-QKKALIFTN 291 (605)
Q Consensus 217 l~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~~~~~k----~~~l~~llk~~~~-~~k~IIFv~ 291 (605)
++|||++.+. +....-.....+.+.+.. .........++......+ ...++..++..+. ++++|||+|
T Consensus 134 l~SATPsles--~~~~~~g~~~~~~l~~r~-----~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvfln 206 (505)
T TIGR00595 134 LGSATPSLES--YHNAKQKAYRLLVLTRRV-----SGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLN 206 (505)
T ss_pred EEeCCCCHHH--HHHHhcCCeEEeechhhh-----cCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEe
Confidence 9999977443 322222222233332210 000011112222221111 1233444443333 458999977
Q ss_pred chhH------------------------------------------------------------HHHHHHHHHHc--CCc
Q 007402 292 TIDM------------------------------------------------------------AFRLKLFLEKF--GIK 309 (605)
Q Consensus 292 s~~~------------------------------------------------------------~~~L~~~L~~~--gi~ 309 (605)
++-- .+++.+.|.+. +.+
T Consensus 207 rrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~ 286 (505)
T TIGR00595 207 RRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGAR 286 (505)
T ss_pred CCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCc
Confidence 6432 57788888776 678
Q ss_pred EEEEcCCCCHHHH--HHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccE
Q 007402 310 SAILNAELPQNSR--LHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 387 (605)
Q Consensus 310 ~~~l~~~l~~~~R--~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~ 387 (605)
+..+|++++...+ ..+++.|.+|+++|||+|++++ +|+||++|++
T Consensus 287 v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~---------------------------------kG~d~~~v~l 333 (505)
T TIGR00595 287 IARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIA---------------------------------KGHHFPNVTL 333 (505)
T ss_pred EEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccc---------------------------------cCCCCCcccE
Confidence 9999999987766 8899999999999999999965 8999999999
Q ss_pred EE--EeCCCC----------CchhHHHhhcccccCCCCccEEEE-eCCch
Q 007402 388 VI--NFEMPQ----------NAAGYVHRIGRTGRAYNTGASVSL-VSPDE 424 (605)
Q Consensus 388 VI--~fd~P~----------s~~~yiqRiGRtgR~g~~G~ai~~-v~~~e 424 (605)
|+ ++|... ....|+|++||+||++..|.++.. ..|++
T Consensus 334 V~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~~ 383 (505)
T TIGR00595 334 VGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPNH 383 (505)
T ss_pred EEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCCC
Confidence 85 666432 246789999999999999998854 44544
No 90
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.96 E-value=2.2e-27 Score=257.15 Aligned_cols=304 Identities=20% Similarity=0.274 Sum_probs=207.9
Q ss_pred CCChHHHHHHHHHHhC----CCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHH
Q 007402 47 QKPTLIQQASIPLILE----GKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMAL 122 (605)
Q Consensus 47 ~~pt~iQ~~aIp~~l~----gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l 122 (605)
..|+++|++|+..+.. ++..++++|||+|||..++-.+... ...+||||||++|+.||++.+...
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~-----------~~~~Lvlv~~~~L~~Qw~~~~~~~ 103 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL-----------KRSTLVLVPTKELLDQWAEALKKF 103 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh-----------cCCEEEEECcHHHHHHHHHHHHHh
Confidence 3689999999999998 8999999999999999776544432 223999999999999999777665
Q ss_pred HHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCcHHHH
Q 007402 123 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 202 (605)
Q Consensus 123 ~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~~~l 202 (605)
+.. ...+..+.|+... ... ..|+|+|.+.+....... ......+.+||+||||++.+..|....
T Consensus 104 ~~~-----~~~~g~~~~~~~~------~~~-~~i~vat~qtl~~~~~l~----~~~~~~~~liI~DE~Hh~~a~~~~~~~ 167 (442)
T COG1061 104 LLL-----NDEIGIYGGGEKE------LEP-AKVTVATVQTLARRQLLD----EFLGNEFGLIIFDEVHHLPAPSYRRIL 167 (442)
T ss_pred cCC-----ccccceecCceec------cCC-CcEEEEEhHHHhhhhhhh----hhcccccCEEEEEccccCCcHHHHHHH
Confidence 421 1123333343211 111 369999988887642001 133346899999999999876655555
Q ss_pred HHHHhhCCCCceEEEEeeecChhH-HHHHHHhcC-CCeEEEcCCccCccccccCCCcEEEEEEc----------------
Q 007402 203 KALSAVIPRGCQCLLMSATSSSDV-DKLKKLILH-NPYILTLPEVGDVKDEVIPKNVQQFWISC---------------- 264 (605)
Q Consensus 203 ~~i~~~lp~~~q~il~SATl~~~v-~~l~~~~l~-~p~~i~l~~~~~~~~~~~~~~l~q~~~~~---------------- 264 (605)
..+....+ .+++|||+.... .....++.. .|.+........... ........+.+.+
T Consensus 168 ~~~~~~~~----~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~-g~Lap~~~~~i~~~~t~~~~~~~~~~~~~ 242 (442)
T COG1061 168 ELLSAAYP----RLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDE-GYLAPYKYVEIKVTLTEDEEREYAKESAR 242 (442)
T ss_pred Hhhhcccc----eeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhC-CCccceEEEEEEeccchHHHHHhhhhhhh
Confidence 44444333 899999976333 122222211 133333322100000 0001111111111
Q ss_pred ----------------------cccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHH
Q 007402 265 ----------------------SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 322 (605)
Q Consensus 265 ----------------------~~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R 322 (605)
....+...+..++.......+++|||.+.+.++.+...|..-|+ +..+.++.|..+|
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR 321 (442)
T COG1061 243 FRELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEER 321 (442)
T ss_pred hhhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHH
Confidence 11112222333333222356999999999999999999998888 8999999999999
Q ss_pred HHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHH
Q 007402 323 LHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVH 402 (605)
Q Consensus 323 ~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiq 402 (605)
..++++|+.|.+++|+++.++. .|+|+|+++++|......|...|+|
T Consensus 322 ~~il~~fr~g~~~~lv~~~vl~---------------------------------EGvDiP~~~~~i~~~~t~S~~~~~Q 368 (442)
T COG1061 322 EAILERFRTGGIKVLVTVKVLD---------------------------------EGVDIPDADVLIILRPTGSRRLFIQ 368 (442)
T ss_pred HHHHHHHHcCCCCEEEEeeecc---------------------------------ceecCCCCcEEEEeCCCCcHHHHHH
Confidence 9999999999999999999987 6999999999999999999999999
Q ss_pred hhccccc-CCCCccE
Q 007402 403 RIGRTGR-AYNTGAS 416 (605)
Q Consensus 403 RiGRtgR-~g~~G~a 416 (605)
|+||.-| ...++.+
T Consensus 369 ~lGR~LR~~~~k~~~ 383 (442)
T COG1061 369 RLGRGLRPAEGKEDT 383 (442)
T ss_pred HhhhhccCCCCCCce
Confidence 9999999 4445543
No 91
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.96 E-value=2.8e-26 Score=247.85 Aligned_cols=327 Identities=22% Similarity=0.247 Sum_probs=241.4
Q ss_pred ccCCCCHHHHHH-HHHCCCCCChHHHHHHHHHHhCC------CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCe
Q 007402 29 EELGLDLRLVHA-LNKKGIQKPTLIQQASIPLILEG------KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPA 101 (605)
Q Consensus 29 ~~~~L~~~l~~a-l~~~g~~~pt~iQ~~aIp~~l~g------kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~ 101 (605)
-.++.+..+++. +..+.| ++|..|+.+|..|+.. -+=|+++.-|||||+++++.++..+-. |.+
T Consensus 243 ~~~~~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~--------G~Q 313 (677)
T COG1200 243 IPLPANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA--------GYQ 313 (677)
T ss_pred CCCCccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc--------CCe
Confidence 345566666655 577899 6999999999998865 246999999999999999999998755 788
Q ss_pred EEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHH----HcCCCcEEEECCchHHHHHhcCCCCCcc
Q 007402 102 ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAA----LAGPPDIVIATPGCMPKCLSTGVLQSKS 177 (605)
Q Consensus 102 ~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~----l~~~~dIvV~TP~~l~~~l~~~~~~~~~ 177 (605)
+..++||.-||.|.+..+.+++... ++++..++|.......... ..+..+|||+|- .++. ...
T Consensus 314 ~ALMAPTEILA~QH~~~~~~~l~~~----~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTH----ALiQ-----d~V 380 (677)
T COG1200 314 AALMAPTEILAEQHYESLRKWLEPL----GIRVALLTGSLKGKARKEILEQLASGEIDIVVGTH----ALIQ-----DKV 380 (677)
T ss_pred eEEeccHHHHHHHHHHHHHHHhhhc----CCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcc----hhhh-----cce
Confidence 9999999999999999999998866 7899999998876554433 346699999992 3333 237
Q ss_pred cCCCceEEEEeCcchhccCCcHHHHHHHHhhCCC-CceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCC
Q 007402 178 FSDSLKILVLDEADLLLSYGYEDDLKALSAVIPR-GCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN 256 (605)
Q Consensus 178 ~l~~l~~lViDEad~i~~~g~~~~l~~i~~~lp~-~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~ 256 (605)
.+.++.++|+||=|++ |-. =+..+..-.. .+.++.||||+-+..-.+. ...+--+=.+++ -..-...
T Consensus 381 ~F~~LgLVIiDEQHRF---GV~--QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt--~fgDldvS~IdE-----lP~GRkp 448 (677)
T COG1200 381 EFHNLGLVIIDEQHRF---GVH--QRLALREKGEQNPHVLVMTATPIPRTLALT--AFGDLDVSIIDE-----LPPGRKP 448 (677)
T ss_pred eecceeEEEEeccccc---cHH--HHHHHHHhCCCCCcEEEEeCCCchHHHHHH--Hhccccchhhcc-----CCCCCCc
Confidence 7899999999999984 222 2222222223 5789999999876543332 222221111222 1222345
Q ss_pred cEEEEEEccccchHHHHHHHHHhhcC-CCeEEEEecchhHHH--------HHHHHHHHc--CCcEEEEcCCCCHHHHHHH
Q 007402 257 VQQFWISCSERDKLLYILTLLKLELV-QKKALIFTNTIDMAF--------RLKLFLEKF--GIKSAILNAELPQNSRLHI 325 (605)
Q Consensus 257 l~q~~~~~~~~~k~~~l~~llk~~~~-~~k~IIFv~s~~~~~--------~L~~~L~~~--gi~~~~l~~~l~~~~R~~i 325 (605)
+..+++..+. ...++..+..... +.++.+.|+-++..+ .++..|..+ +.++..+||.|+..++..+
T Consensus 449 I~T~~i~~~~---~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~v 525 (677)
T COG1200 449 ITTVVIPHER---RPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAV 525 (677)
T ss_pred eEEEEecccc---HHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHH
Confidence 7777775543 3444444444443 457888888776544 444455443 4568999999999999999
Q ss_pred HHHHHcCCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCC-CchhHHHhh
Q 007402 326 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQ-NAAGYVHRI 404 (605)
Q Consensus 326 ~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~-s~~~yiqRi 404 (605)
+++|++|+++|||||.+.|+ |||+||.+++|..|.-. -..+.-|--
T Consensus 526 M~~Fk~~e~~ILVaTTVIEV---------------------------------GVdVPnATvMVIe~AERFGLaQLHQLR 572 (677)
T COG1200 526 MEAFKEGEIDILVATTVIEV---------------------------------GVDVPNATVMVIENAERFGLAQLHQLR 572 (677)
T ss_pred HHHHHcCCCcEEEEeeEEEe---------------------------------cccCCCCeEEEEechhhhhHHHHHHhc
Confidence 99999999999999999884 99999999999888644 456777888
Q ss_pred cccccCCCCccEEEEeCCchh
Q 007402 405 GRTGRAYNTGASVSLVSPDEM 425 (605)
Q Consensus 405 GRtgR~g~~G~ai~~v~~~e~ 425 (605)
||+||++...+|++++.+...
T Consensus 573 GRVGRG~~qSyC~Ll~~~~~~ 593 (677)
T COG1200 573 GRVGRGDLQSYCVLLYKPPLS 593 (677)
T ss_pred cccCCCCcceEEEEEeCCCCC
Confidence 999999999999999998763
No 92
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=3.8e-26 Score=255.67 Aligned_cols=323 Identities=18% Similarity=0.164 Sum_probs=229.8
Q ss_pred CCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHH
Q 007402 44 KGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALI 123 (605)
Q Consensus 44 ~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~ 123 (605)
+|. .|+++|-..--.+.+|+ |+.++||+|||++|.+|++...+. +..+.|++|+.+||.|.++++..++
T Consensus 79 lgm-~~ydVQliGgl~L~~G~--IaEm~TGEGKTL~a~lp~~l~al~--------g~~VhIvT~ndyLA~RD~e~m~~l~ 147 (908)
T PRK13107 79 FEM-RHFDVQLLGGMVLDSNR--IAEMRTGEGKTLTATLPAYLNALT--------GKGVHVITVNDYLARRDAENNRPLF 147 (908)
T ss_pred hCC-CcCchHHhcchHhcCCc--cccccCCCCchHHHHHHHHHHHhc--------CCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 465 68999987766666665 999999999999999999988876 4449999999999999999999999
Q ss_pred HHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchH-HHHHhcCCCC--CcccCCCceEEEEeCcchhccCC---
Q 007402 124 ELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCM-PKCLSTGVLQ--SKSFSDSLKILVLDEADLLLSYG--- 197 (605)
Q Consensus 124 ~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l-~~~l~~~~~~--~~~~l~~l~~lViDEad~i~~~g--- 197 (605)
.++ ++++..+.++.+..... -...+||+++||+.+ .++|+.+... .......+.++||||||.|+-..
T Consensus 148 ~~l----Glsv~~i~~~~~~~~r~--~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArt 221 (908)
T PRK13107 148 EFL----GLTVGINVAGLGQQEKK--AAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEART 221 (908)
T ss_pred Hhc----CCeEEEecCCCCHHHHH--hcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCC
Confidence 987 78999988888764333 334789999999999 8998876321 12234778999999999876221
Q ss_pred -------------cHHHHHHHHhhCC--------------------CCce------------------------------
Q 007402 198 -------------YEDDLKALSAVIP--------------------RGCQ------------------------------ 214 (605)
Q Consensus 198 -------------~~~~l~~i~~~lp--------------------~~~q------------------------------ 214 (605)
....+..+...+. +..+
T Consensus 222 PLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~ 301 (908)
T PRK13107 222 PLIISGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSA 301 (908)
T ss_pred ceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCc
Confidence 1111221111111 0011
Q ss_pred --------------------------------------------------------------------------------
Q 007402 215 -------------------------------------------------------------------------------- 214 (605)
Q Consensus 215 -------------------------------------------------------------------------------- 214 (605)
T Consensus 302 ~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfF 381 (908)
T PRK13107 302 ANISLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYF 381 (908)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHH
Confidence
Q ss_pred -----EEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEEEEEccccchHHHHHHHHH-hhcCCCeEEE
Q 007402 215 -----CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLK-LELVQKKALI 288 (605)
Q Consensus 215 -----~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~~~~~k~~~l~~llk-~~~~~~k~II 288 (605)
+.+||.|......++.+.|--+- +.++. ..+....-..-.+.....+|+..+..-++ .+..+.++||
T Consensus 382 r~Y~kL~GMTGTa~te~~Ef~~iY~l~V--v~IPT-----nkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV 454 (908)
T PRK13107 382 RQYEKLAGMTGTADTEAFEFQHIYGLDT--VVVPT-----NRPMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLV 454 (908)
T ss_pred HhhhHhhcccCCChHHHHHHHHHhCCCE--EECCC-----CCCccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 11122222222222222111110 11100 00000000011233445677766655443 4455779999
Q ss_pred EecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCcccccccCCCCC
Q 007402 289 FTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA 368 (605)
Q Consensus 289 Fv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (605)
||+|+..++.|...|.+.|+++.+||+.+++.++..+.+.|+.|. |+|||+++.
T Consensus 455 ~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAG------------------------ 508 (908)
T PRK13107 455 GTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAG------------------------ 508 (908)
T ss_pred EeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcC------------------------
Confidence 999999999999999999999999999999999999999999998 999999987
Q ss_pred ccccccccccccccCCc-------------------------------------cEEEEeCCCCCchhHHHhhcccccCC
Q 007402 369 KLDSEFGVVRGIDFKNV-------------------------------------HTVINFEMPQNAAGYVHRIGRTGRAY 411 (605)
Q Consensus 369 ~~~~~~gv~rGiD~~~v-------------------------------------~~VI~fd~P~s~~~yiqRiGRtgR~g 411 (605)
||+||.=- =+||--..+.|..---|-.||+||.|
T Consensus 509 ---------RGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQG 579 (908)
T PRK13107 509 ---------RGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQG 579 (908)
T ss_pred ---------CCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCC
Confidence 89999721 26888888999888899999999999
Q ss_pred CCccEEEEeCCchh
Q 007402 412 NTGASVSLVSPDEM 425 (605)
Q Consensus 412 ~~G~ai~~v~~~e~ 425 (605)
.+|.+-.|++-+|.
T Consensus 580 DPGss~f~lSlED~ 593 (908)
T PRK13107 580 DAGSSRFYLSMEDS 593 (908)
T ss_pred CCCceeEEEEeCcH
Confidence 99999999997765
No 93
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.94 E-value=6.3e-25 Score=249.26 Aligned_cols=339 Identities=21% Similarity=0.239 Sum_probs=263.3
Q ss_pred CCCCHHHHHHHHH-CCCCCChHHHHHHHHHHhCC------CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEE
Q 007402 31 LGLDLRLVHALNK-KGIQKPTLIQQASIPLILEG------KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAAL 103 (605)
Q Consensus 31 ~~L~~~l~~al~~-~g~~~pt~iQ~~aIp~~l~g------kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~L 103 (605)
|+.|......+.+ ++| .-|+-|..||..+.+. -|=|+|+.-|-|||.+++=.++..+.. |.++.
T Consensus 577 f~~d~~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~--------GKQVA 647 (1139)
T COG1197 577 FPPDTEWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD--------GKQVA 647 (1139)
T ss_pred CCCChHHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC--------CCeEE
Confidence 5677777777666 576 4699999999988753 388999999999999998888877655 67899
Q ss_pred EEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHc----CCCcEEEECCchHHHHHhcCCCCCcccC
Q 007402 104 VLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALA----GPPDIVIATPGCMPKCLSTGVLQSKSFS 179 (605)
Q Consensus 104 ilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~----~~~dIvV~TP~~l~~~l~~~~~~~~~~l 179 (605)
|||||--||+|.++.|..-+..+ .+++..++.-.+...+...+. +..||||+| ..+|..+ ..+
T Consensus 648 vLVPTTlLA~QHy~tFkeRF~~f----PV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGT----HrLL~kd-----v~F 714 (1139)
T COG1197 648 VLVPTTLLAQQHYETFKERFAGF----PVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGT----HRLLSKD-----VKF 714 (1139)
T ss_pred EEcccHHhHHHHHHHHHHHhcCC----CeeEEEecccCCHHHHHHHHHHHhcCCccEEEec----hHhhCCC-----cEE
Confidence 99999999999999999876644 788988888887777665554 779999999 4555543 788
Q ss_pred CCceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEE
Q 007402 180 DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259 (605)
Q Consensus 180 ~~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q 259 (605)
++|.+|||||-|++ .-...+.++.+ ..+.-++-||||+-+..-.+.=..+++-.+|..+. ...-.+..
T Consensus 715 kdLGLlIIDEEqRF-GVk~KEkLK~L----r~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP-------~~R~pV~T 782 (1139)
T COG1197 715 KDLGLLIIDEEQRF-GVKHKEKLKEL----RANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPP-------EDRLPVKT 782 (1139)
T ss_pred ecCCeEEEechhhc-CccHHHHHHHH----hccCcEEEeeCCCCcchHHHHHhcchhhhhccCCC-------CCCcceEE
Confidence 99999999999983 22344555555 45677999999998777666666666665554433 12224555
Q ss_pred EEEEccccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHc--CCcEEEEcCCCCHHHHHHHHHHHHcCCCcEE
Q 007402 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKF--GIKSAILNAELPQNSRLHILEEFNAGLFDYL 337 (605)
Q Consensus 260 ~~~~~~~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~--gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iL 337 (605)
|+. +.+-..+--++++.-..+|++-..+|.++..+.++..|++. ..++++.||.|+..+-..++..|-+|+++||
T Consensus 783 ~V~---~~d~~~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVL 859 (1139)
T COG1197 783 FVS---EYDDLLIREAILRELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVL 859 (1139)
T ss_pred EEe---cCChHHHHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEE
Confidence 544 33444455566666666899999999999999999999987 4578999999999999999999999999999
Q ss_pred EEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCC-CchhHHHhhcccccCCCCccE
Q 007402 338 IATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQ-NAAGYVHRIGRTGRAYNTGAS 416 (605)
Q Consensus 338 IaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~-s~~~yiqRiGRtgR~g~~G~a 416 (605)
|||...+ .|||+|+++.+|.-+.-. -.++..|--||+||..+.++|
T Consensus 860 v~TTIIE---------------------------------tGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYA 906 (1139)
T COG1197 860 VCTTIIE---------------------------------TGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYA 906 (1139)
T ss_pred EEeeeee---------------------------------cCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEE
Confidence 9999987 599999999998655433 467889999999999999999
Q ss_pred EEEeCCchhhHHHHHHHHHhhhhh
Q 007402 417 VSLVSPDEMKIFEEIKSFVGDDEN 440 (605)
Q Consensus 417 i~~v~~~e~~~~~~~~~~l~~~~~ 440 (605)
+.++.+... .-+..++.|..|..
T Consensus 907 Yfl~p~~k~-lT~~A~kRL~aI~~ 929 (1139)
T COG1197 907 YFLYPPQKA-LTEDAEKRLEAIAS 929 (1139)
T ss_pred EEeecCccc-cCHHHHHHHHHHHh
Confidence 999976433 23334444555444
No 94
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.94 E-value=1.2e-25 Score=245.66 Aligned_cols=317 Identities=17% Similarity=0.203 Sum_probs=224.5
Q ss_pred HCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHH
Q 007402 43 KKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMAL 122 (605)
Q Consensus 43 ~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l 122 (605)
..+| +|-.+|.+||..+..|..|+|.|+|.+|||.++-..|.-.- ..++|+++..|-++|.+|-++.|+..
T Consensus 293 ~~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq--------~h~TR~iYTSPIKALSNQKfRDFk~t 363 (1248)
T KOG0947|consen 293 IYPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQ--------KHMTRTIYTSPIKALSNQKFRDFKET 363 (1248)
T ss_pred hCCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHH--------hhccceEecchhhhhccchHHHHHHh
Confidence 3466 58899999999999999999999999999998544433221 34788999999999999999998876
Q ss_pred HHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCcHHHH
Q 007402 123 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 202 (605)
Q Consensus 123 ~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~~~l 202 (605)
+. ++ ..++|+... .....++|.|.+.|..+|.++. ..+.++.+||+||+|.+.+....-.+
T Consensus 364 F~------Dv--gLlTGDvqi-------nPeAsCLIMTTEILRsMLYrga----dliRDvE~VIFDEVHYiND~eRGvVW 424 (1248)
T KOG0947|consen 364 FG------DV--GLLTGDVQI-------NPEASCLIMTTEILRSMLYRGA----DLIRDVEFVIFDEVHYINDVERGVVW 424 (1248)
T ss_pred cc------cc--ceeecceee-------CCCcceEeehHHHHHHHHhccc----chhhccceEEEeeeeecccccccccc
Confidence 53 22 267787543 2356899999999999999885 77889999999999999988777889
Q ss_pred HHHHhhCCCCceEEEEeeecChhHHHHHHHhc------------CCCeEEEc------------CCccC-----cc---c
Q 007402 203 KALSAVIPRGCQCLLMSATSSSDVDKLKKLIL------------HNPYILTL------------PEVGD-----VK---D 250 (605)
Q Consensus 203 ~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l------------~~p~~i~l------------~~~~~-----~~---~ 250 (605)
+.++=++|++.++|++|||.|+..+---...- +.|+-+.. ++.+. .. .
T Consensus 425 EEViIMlP~HV~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~ 504 (1248)
T KOG0947|consen 425 EEVIIMLPRHVNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKD 504 (1248)
T ss_pred eeeeeeccccceEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhh
Confidence 99999999999999999999987643322211 11111100 00000 00 0
Q ss_pred cc--------------cC------CCcEEEEEE---------cccc--chHHHHHHHHHhhcCCCeEEEEecchhHHHHH
Q 007402 251 EV--------------IP------KNVQQFWIS---------CSER--DKLLYILTLLKLELVQKKALIFTNTIDMAFRL 299 (605)
Q Consensus 251 ~~--------------~~------~~l~q~~~~---------~~~~--~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L 299 (605)
.. .. ..-.+.+.. .... .-++.++..++.. ..-++||||-++.+|+..
T Consensus 505 ~~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~-~lLP~VvFvFSkkrCde~ 583 (1248)
T KOG0947|consen 505 SLKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKK-NLLPVVVFVFSKKRCDEY 583 (1248)
T ss_pred hhcccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhc-ccCceEEEEEccccHHHH
Confidence 00 00 000000000 0011 0133344433321 134899999999999999
Q ss_pred HHHHHHc---------------------------------------CCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEc
Q 007402 300 KLFLEKF---------------------------------------GIKSAILNAELPQNSRLHILEEFNAGLFDYLIAT 340 (605)
Q Consensus 300 ~~~L~~~---------------------------------------gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaT 340 (605)
+.+|..+ .-.++++||++-+--+.-+..-|.+|.+.||+||
T Consensus 584 a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFAT 663 (1248)
T KOG0947|consen 584 ADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFAT 663 (1248)
T ss_pred HHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeeh
Confidence 9999754 1235689999999999999999999999999999
Q ss_pred CCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCC---------CCCchhHHHhhcccccCC
Q 007402 341 DDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEM---------PQNAAGYVHRIGRTGRAY 411 (605)
Q Consensus 341 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~---------P~s~~~yiqRiGRtgR~g 411 (605)
...+ .|||.|.-.+|+. .+ --.+..|+|+.||+||.|
T Consensus 664 ETFA---------------------------------MGVNMPARtvVF~-Sl~KhDG~efR~L~PGEytQMAGRAGRRG 709 (1248)
T KOG0947|consen 664 ETFA---------------------------------MGVNMPARTVVFS-SLRKHDGNEFRELLPGEYTQMAGRAGRRG 709 (1248)
T ss_pred hhhh---------------------------------hhcCCCceeEEee-ehhhccCcceeecCChhHHhhhccccccc
Confidence 7744 4999997655553 22 136889999999999988
Q ss_pred C--CccEEEEeCC
Q 007402 412 N--TGASVSLVSP 422 (605)
Q Consensus 412 ~--~G~ai~~v~~ 422 (605)
- .|+++.+...
T Consensus 710 lD~tGTVii~~~~ 722 (1248)
T KOG0947|consen 710 LDETGTVIIMCKD 722 (1248)
T ss_pred cCcCceEEEEecC
Confidence 7 6666666543
No 95
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.94 E-value=1.1e-25 Score=251.12 Aligned_cols=346 Identities=19% Similarity=0.248 Sum_probs=252.9
Q ss_pred CCCHHHHHHHHHCCCCCChHHHHHHHHHHhCC-CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCC---CCCCCeEEEEcC
Q 007402 32 GLDLRLVHALNKKGIQKPTLIQQASIPLILEG-KDVVARAKTGSGKTFAYLLPLLHRLFNESSPK---SKLAPAALVLVP 107 (605)
Q Consensus 32 ~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~g-kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~---~~~~~~~LilvP 107 (605)
.|+.+-..++. |..++..+|....+.++.+ .++++|||||+|||..+++-+++.+-...... .-...++++++|
T Consensus 295 elP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAP 372 (1674)
T KOG0951|consen 295 ELPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAP 372 (1674)
T ss_pred CCcchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEee
Confidence 45556556655 7788999999999999998 58999999999999999999999987654422 233568999999
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEE
Q 007402 108 TRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVL 187 (605)
Q Consensus 108 treLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lVi 187 (605)
.+.||+.+...|.+....+ +|+|.-++|+.....+. -....|+||||+..--.-+++. .....+-++++||
T Consensus 373 mKaLvqE~VgsfSkRla~~----GI~V~ElTgD~~l~~~q---ieeTqVIV~TPEK~DiITRk~g--draY~qlvrLlII 443 (1674)
T KOG0951|consen 373 MKALVQEMVGSFSKRLAPL----GITVLELTGDSQLGKEQ---IEETQVIVTTPEKWDIITRKSG--DRAYEQLVRLLII 443 (1674)
T ss_pred HHHHHHHHHHHHHhhcccc----CcEEEEecccccchhhh---hhcceeEEeccchhhhhhcccC--chhHHHHHHHHhh
Confidence 9999999998887766544 89999999986533211 1357899999999733333321 1233445789999
Q ss_pred eCcchhccCCcHHHHHHHHhhC-------CCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEE
Q 007402 188 DEADLLLSYGYEDDLKALSAVI-------PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF 260 (605)
Q Consensus 188 DEad~i~~~g~~~~l~~i~~~l-------p~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~ 260 (605)
||.|++-+. ..+.++.|.... ..++..+++|||+|+..+.-.-+. .+|.-+...+ ....+..+.|.
T Consensus 444 DEIHLLhDd-RGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~-v~~~glf~fd-----~syRpvPL~qq 516 (1674)
T KOG0951|consen 444 DEIHLLHDD-RGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLR-VDPEGLFYFD-----SSYRPVPLKQQ 516 (1674)
T ss_pred hhhhhcccc-cchHHHHHHHHHHHHhhhcccCceeeeecccCCchhhhHHHhc-cCcccccccC-----cccCcCCccce
Confidence 999987554 344555554322 247899999999998754333222 2332222222 45667789999
Q ss_pred EEEccccchHH-------HHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHH----------c-----------------
Q 007402 261 WISCSERDKLL-------YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEK----------F----------------- 306 (605)
Q Consensus 261 ~~~~~~~~k~~-------~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~----------~----------------- 306 (605)
|+-+.+..-+. .+|.-+-.+..++++||||.++..+-+.+.+++. |
T Consensus 517 ~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~ 596 (1674)
T KOG0951|consen 517 YIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQ 596 (1674)
T ss_pred EeccccCCchHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhc
Confidence 99887654332 3444444455678999999999887777766651 1
Q ss_pred ----------CCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCcccccccc
Q 007402 307 ----------GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGV 376 (605)
Q Consensus 307 ----------gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv 376 (605)
.+..+++|++|...+|..+.+.|..|.++||++|-.++
T Consensus 597 ~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatla-------------------------------- 644 (1674)
T KOG0951|consen 597 AKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLA-------------------------------- 644 (1674)
T ss_pred ccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhh--------------------------------
Confidence 45678999999999999999999999999999998866
Q ss_pred ccccccCCccEEEE----eCC------CCCchhHHHhhcccccCC--CCccEEEEeCCchhhHH
Q 007402 377 VRGIDFKNVHTVIN----FEM------PQNAAGYVHRIGRTGRAY--NTGASVSLVSPDEMKIF 428 (605)
Q Consensus 377 ~rGiD~~~v~~VI~----fd~------P~s~~~yiqRiGRtgR~g--~~G~ai~~v~~~e~~~~ 428 (605)
+|+++|.-+++|- ||+ +.++.+.+|+.||+||-+ ..|..+.+-...+....
T Consensus 645 -wgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyy 707 (1674)
T KOG0951|consen 645 -WGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYY 707 (1674)
T ss_pred -hhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhh
Confidence 9999998777663 554 457899999999999954 46667776666655433
No 96
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.94 E-value=7.7e-26 Score=213.63 Aligned_cols=166 Identities=36% Similarity=0.522 Sum_probs=141.0
Q ss_pred hHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCC
Q 007402 50 TLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQ 129 (605)
Q Consensus 50 t~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~ 129 (605)
||+|.++++.+.+|+++++.||||+|||.+|++|+++.+... ...++||++|+++|+.|+.+.+..+....
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~------~~~~~lii~P~~~l~~q~~~~~~~~~~~~--- 71 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG------KDARVLIIVPTRALAEQQFERLRKFFSNT--- 71 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT------SSSEEEEEESSHHHHHHHHHHHHHHTTTT---
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC------CCceEEEEeeccccccccccccccccccc---
Confidence 799999999999999999999999999999999999988773 23489999999999999999998876542
Q ss_pred cceEEEEEeCCCCHH-HHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCcHHHHHHHHhh
Q 007402 130 VQLKVVQLTSSMPAS-DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 208 (605)
Q Consensus 130 ~~i~v~~l~~~~~~~-~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~~~l~~i~~~ 208 (605)
.+++..++++.... .....+...++|+|+||+++.+.+..+. ..+.++++|||||+|.+..++|...+..+...
T Consensus 72 -~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~----~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~ 146 (169)
T PF00270_consen 72 -NVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGK----INISRLSLIVIDEAHHLSDETFRAMLKSILRR 146 (169)
T ss_dssp -TSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTS----STGTTESEEEEETHHHHHHTTHHHHHHHHHHH
T ss_pred -ccccccccccccccccccccccccccccccCcchhhccccccc----cccccceeeccCcccccccccHHHHHHHHHHH
Confidence 57788888888755 4555566789999999999999998753 34566999999999999999889999999888
Q ss_pred CC--CCceEEEEeeecChhHHHH
Q 007402 209 IP--RGCQCLLMSATSSSDVDKL 229 (605)
Q Consensus 209 lp--~~~q~il~SATl~~~v~~l 229 (605)
+. ...|+++||||+++.++.+
T Consensus 147 ~~~~~~~~~i~~SAT~~~~~~~~ 169 (169)
T PF00270_consen 147 LKRFKNIQIILLSATLPSNVEKL 169 (169)
T ss_dssp SHTTTTSEEEEEESSSTHHHHHH
T ss_pred hcCCCCCcEEEEeeCCChhHhhC
Confidence 73 3589999999999776653
No 97
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=2.4e-23 Score=233.97 Aligned_cols=129 Identities=24% Similarity=0.219 Sum_probs=114.0
Q ss_pred EEccccchHHHHHHHHHh-hcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEc
Q 007402 262 ISCSERDKLLYILTLLKL-ELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIAT 340 (605)
Q Consensus 262 ~~~~~~~k~~~l~~llk~-~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaT 340 (605)
+..+..+|+..+...+.. .....++||||+|++.++.|...|.+.|+++.+||+ .+..|...+..|..+...|+|||
T Consensus 576 vy~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIAT 653 (1025)
T PRK12900 576 VYKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIAT 653 (1025)
T ss_pred EecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEec
Confidence 344566788888777753 334679999999999999999999999999999997 68899999999999999999999
Q ss_pred CCCCcccccccCCCCCcccccccCCCCCccccccccccccccC---Ccc-----EEEEeCCCCCchhHHHhhcccccCCC
Q 007402 341 DDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK---NVH-----TVINFEMPQNAAGYVHRIGRTGRAYN 412 (605)
Q Consensus 341 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~---~v~-----~VI~fd~P~s~~~yiqRiGRtgR~g~ 412 (605)
|+++ ||+||+ .|. +||+++.|.|...|.||+|||||.|.
T Consensus 654 NMAG---------------------------------RGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGd 700 (1025)
T PRK12900 654 NMAG---------------------------------RGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGD 700 (1025)
T ss_pred cCcC---------------------------------CCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCC
Confidence 9987 999999 554 34999999999999999999999999
Q ss_pred CccEEEEeCCchh
Q 007402 413 TGASVSLVSPDEM 425 (605)
Q Consensus 413 ~G~ai~~v~~~e~ 425 (605)
+|.+++|++.+|.
T Consensus 701 pGsS~ffvSleD~ 713 (1025)
T PRK12900 701 PGESVFYVSLEDE 713 (1025)
T ss_pred CcceEEEechhHH
Confidence 9999999998775
No 98
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.93 E-value=9.6e-24 Score=248.15 Aligned_cols=317 Identities=16% Similarity=0.171 Sum_probs=196.2
Q ss_pred CCChHHHHHHHHHHh----CC-CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q 007402 47 QKPTLIQQASIPLIL----EG-KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMA 121 (605)
Q Consensus 47 ~~pt~iQ~~aIp~~l----~g-kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~ 121 (605)
..++++|.+||..+. +| +.+|++++||||||.++ +.++.+++.. ....++|||||+.+|+.|+.+.|..
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~ta-i~li~~L~~~-----~~~~rVLfLvDR~~L~~Qa~~~F~~ 485 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTA-IALMYRLLKA-----KRFRRILFLVDRSALGEQAEDAFKD 485 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHH-HHHHHHHHhc-----CccCeEEEEecHHHHHHHHHHHHHh
Confidence 358999999998765 23 67999999999999874 4455666552 2356899999999999999998887
Q ss_pred HHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCC-CcccCCCceEEEEeCcchhcc-----
Q 007402 122 LIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQ-SKSFSDSLKILVLDEADLLLS----- 195 (605)
Q Consensus 122 l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~-~~~~l~~l~~lViDEad~i~~----- 195 (605)
+.... ...+..+.+..... .........|+|+|...+...+...... ....+..+++||+||||+-..
T Consensus 486 ~~~~~----~~~~~~i~~i~~L~--~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~ 559 (1123)
T PRK11448 486 TKIEG----DQTFASIYDIKGLE--DKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEM 559 (1123)
T ss_pred ccccc----ccchhhhhchhhhh--hhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCcccccc
Confidence 52111 11111111111000 1111235789999999987765432110 113467888999999999531
Q ss_pred -C---------CcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHH--------------HhcCC---CeEEEc--CCcc
Q 007402 196 -Y---------GYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKK--------------LILHN---PYILTL--PEVG 246 (605)
Q Consensus 196 -~---------g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~--------------~~l~~---p~~i~l--~~~~ 246 (605)
. .|...+..++.++. .-.|+||||+......+.. -++-+ |..+.. ...+
T Consensus 560 ~~~~~~~~~~~~~~~~yr~iL~yFd--A~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~g 637 (1123)
T PRK11448 560 SEGELQFRDQLDYVSKYRRVLDYFD--AVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEG 637 (1123)
T ss_pred ccchhccchhhhHHHHHHHHHhhcC--ccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEecccc
Confidence 1 12356777777663 4579999998643322111 01110 111111 0000
Q ss_pred -Ccc-cc----cc--CCCcEEEEE------EccccchH-------HHH-HHHHHh--hcCCCeEEEEecchhHHHHHHHH
Q 007402 247 -DVK-DE----VI--PKNVQQFWI------SCSERDKL-------LYI-LTLLKL--ELVQKKALIFTNTIDMAFRLKLF 302 (605)
Q Consensus 247 -~~~-~~----~~--~~~l~q~~~------~~~~~~k~-------~~l-~~llk~--~~~~~k~IIFv~s~~~~~~L~~~ 302 (605)
... .+ .. ...+....+ .....++. ..+ -.+... ....+|+||||.++++|..+...
T Consensus 638 i~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~ 717 (1123)
T PRK11448 638 IHFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRL 717 (1123)
T ss_pred ccccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHH
Confidence 000 00 00 000000000 00000110 011 111111 11247999999999999999888
Q ss_pred HHHc------CC---cEEEEcCCCCHHHHHHHHHHHHcCCC-cEEEEcCCCCcccccccCCCCCcccccccCCCCCcccc
Q 007402 303 LEKF------GI---KSAILNAELPQNSRLHILEEFNAGLF-DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDS 372 (605)
Q Consensus 303 L~~~------gi---~~~~l~~~l~~~~R~~i~~~F~~g~~-~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (605)
|.+. ++ .+..++|+.+ .+..++++|.++.+ .|+|++|++.
T Consensus 718 L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~---------------------------- 767 (1123)
T PRK11448 718 LKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLT---------------------------- 767 (1123)
T ss_pred HHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccc----------------------------
Confidence 7652 22 4567888886 46789999999887 6899999976
Q ss_pred ccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCC
Q 007402 373 EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYN 412 (605)
Q Consensus 373 ~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~ 412 (605)
+|+|+|.|.+||+++++.|...|+|++||+.|...
T Consensus 768 -----TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~~ 802 (1123)
T PRK11448 768 -----TGIDVPSICNLVFLRRVRSRILYEQMLGRATRLCP 802 (1123)
T ss_pred -----cCCCcccccEEEEecCCCCHHHHHHHHhhhccCCc
Confidence 79999999999999999999999999999999643
No 99
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.92 E-value=7.6e-25 Score=234.30 Aligned_cols=306 Identities=18% Similarity=0.246 Sum_probs=228.3
Q ss_pred ChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHHhcC
Q 007402 49 PTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKG 128 (605)
Q Consensus 49 pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~ 128 (605)
+-|+|..||..+-++..||+.|+|.+|||.++-..|.+.+-. ..|+|+..|-++|.+|-|+++..-+.
T Consensus 130 LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~--------kQRVIYTSPIKALSNQKYREl~~EF~---- 197 (1041)
T KOG0948|consen 130 LDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE--------KQRVIYTSPIKALSNQKYRELLEEFK---- 197 (1041)
T ss_pred cCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh--------cCeEEeeChhhhhcchhHHHHHHHhc----
Confidence 468999999999999999999999999999988888887754 67899999999999999998876442
Q ss_pred CcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCcHHHHHHHHhh
Q 007402 129 QVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 208 (605)
Q Consensus 129 ~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~~~l~~i~~~ 208 (605)
.|...+|+... ......+|.|.+.|..+|.+|. ..+..+.++|+||+|.|-+....-.++.-+-.
T Consensus 198 ----DVGLMTGDVTI-------nP~ASCLVMTTEILRsMLYRGS----EvmrEVaWVIFDEIHYMRDkERGVVWEETIIl 262 (1041)
T KOG0948|consen 198 ----DVGLMTGDVTI-------NPDASCLVMTTEILRSMLYRGS----EVMREVAWVIFDEIHYMRDKERGVVWEETIIL 262 (1041)
T ss_pred ----ccceeecceee-------CCCCceeeeHHHHHHHHHhccc----hHhheeeeEEeeeehhccccccceeeeeeEEe
Confidence 24455666542 2356789999999999999986 77889999999999999887655566666678
Q ss_pred CCCCceEEEEeeecChhHHHHHHHhc---CCCeEEEcCCccCccccccCCCcEEEEEE---------cccc-----chHH
Q 007402 209 IPRGCQCLLMSATSSSDVDKLKKLIL---HNPYILTLPEVGDVKDEVIPKNVQQFWIS---------CSER-----DKLL 271 (605)
Q Consensus 209 lp~~~q~il~SATl~~~v~~l~~~~l---~~p~~i~l~~~~~~~~~~~~~~l~q~~~~---------~~~~-----~k~~ 271 (605)
+|++...+++|||+|+..+. +++.+ ..|.-+...+ ..+..++||.+. +++. +.|.
T Consensus 263 lP~~vr~VFLSATiPNA~qF-AeWI~~ihkQPcHVVYTd-------yRPTPLQHyifP~ggdGlylvVDek~~FrednF~ 334 (1041)
T KOG0948|consen 263 LPDNVRFVFLSATIPNARQF-AEWICHIHKQPCHVVYTD-------YRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQ 334 (1041)
T ss_pred ccccceEEEEeccCCCHHHH-HHHHHHHhcCCceEEeec-------CCCCcceeeeecCCCCeeEEEEecccccchHHHH
Confidence 89999999999999987633 22222 3344443322 234456666433 2222 2222
Q ss_pred HHH-----------------------------------HHHHhh--cCCCeEEEEecchhHHHHHHHHHHHc--------
Q 007402 272 YIL-----------------------------------TLLKLE--LVQKKALIFTNTIDMAFRLKLFLEKF-------- 306 (605)
Q Consensus 272 ~l~-----------------------------------~llk~~--~~~~k~IIFv~s~~~~~~L~~~L~~~-------- 306 (605)
-.. .+.+.- ....++|||+-++..|+.++..+...
T Consensus 335 ~am~~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk 414 (1041)
T KOG0948|consen 335 KAMSVLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEK 414 (1041)
T ss_pred HHHHHhhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHH
Confidence 222 222211 11348999999999999999888653
Q ss_pred -------------------------------CCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCcccccccCCCC
Q 007402 307 -------------------------------GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGG 355 (605)
Q Consensus 307 -------------------------------gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~ 355 (605)
--.+.++||+|-+--+.-|.--|..|.+.+|.||...+
T Consensus 415 ~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFs----------- 483 (1041)
T KOG0948|consen 415 ELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFS----------- 483 (1041)
T ss_pred HHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhh-----------
Confidence 11345799999999898899999999999999997633
Q ss_pred CcccccccCCCCCccccccccccccccCCccEEEE----eCCC----CCchhHHHhhcccccCCC--CccEEEEeCC
Q 007402 356 HVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN----FEMP----QNAAGYVHRIGRTGRAYN--TGASVSLVSP 422 (605)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~----fd~P----~s~~~yiqRiGRtgR~g~--~G~ai~~v~~ 422 (605)
-|++.|.-++|+- ||-- -|...|||+.||+||.|. .|.+|+++..
T Consensus 484 ----------------------iGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDe 538 (1041)
T KOG0948|consen 484 ----------------------IGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDE 538 (1041)
T ss_pred ----------------------hccCCcceeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEEEEecC
Confidence 4999997666552 4432 267899999999999887 6777777765
No 100
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.92 E-value=1.8e-22 Score=200.22 Aligned_cols=302 Identities=20% Similarity=0.263 Sum_probs=212.1
Q ss_pred CChHHHHHHHHHHhC----CCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHH
Q 007402 48 KPTLIQQASIPLILE----GKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALI 123 (605)
Q Consensus 48 ~pt~iQ~~aIp~~l~----gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~ 123 (605)
++|+.|+.+-..+++ .+|.|+.|-||+|||.. +.+.++..++ .|.++.|..|....|..++.++++.+
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~-------~G~~vciASPRvDVclEl~~Rlk~aF 168 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALN-------QGGRVCIASPRVDVCLELYPRLKQAF 168 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHh-------cCCeEEEecCcccchHHHHHHHHHhh
Confidence 579999988766654 48999999999999986 4556666665 27789999999999999999999876
Q ss_pred HHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCcHHHHH
Q 007402 124 ELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLK 203 (605)
Q Consensus 124 ~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~~~l~ 203 (605)
.. ..+..++|+.+... ..++||+|...|+.... .++++||||+|...-.. ...+.
T Consensus 169 ~~------~~I~~Lyg~S~~~f-------r~plvVaTtHQLlrFk~-----------aFD~liIDEVDAFP~~~-d~~L~ 223 (441)
T COG4098 169 SN------CDIDLLYGDSDSYF-------RAPLVVATTHQLLRFKQ-----------AFDLLIIDEVDAFPFSD-DQSLQ 223 (441)
T ss_pred cc------CCeeeEecCCchhc-------cccEEEEehHHHHHHHh-----------hccEEEEeccccccccC-CHHHH
Confidence 53 45667778765432 24788999766655433 47899999999854222 23333
Q ss_pred -HHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEEEEEccccchH-------HHHHH
Q 007402 204 -ALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKL-------LYILT 275 (605)
Q Consensus 204 -~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~~~~~k~-------~~l~~ 275 (605)
++.+......-+|++|||.++.++.- ....+-..+.++.......-. +-. ++.+....|. ..++.
T Consensus 224 ~Av~~ark~~g~~IylTATp~k~l~r~--~~~g~~~~~klp~RfH~~pLp----vPk-f~w~~~~~k~l~r~kl~~kl~~ 296 (441)
T COG4098 224 YAVKKARKKEGATIYLTATPTKKLERK--ILKGNLRILKLPARFHGKPLP----VPK-FVWIGNWNKKLQRNKLPLKLKR 296 (441)
T ss_pred HHHHHhhcccCceEEEecCChHHHHHH--hhhCCeeEeecchhhcCCCCC----CCc-eEEeccHHHHhhhccCCHHHHH
Confidence 33344555778999999999765332 223344445555422221111 222 3333333332 25666
Q ss_pred HHHhhc-CCCeEEEEecchhHHHHHHHHH-HHcCC-cEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCcccccccC
Q 007402 276 LLKLEL-VQKKALIFTNTIDMAFRLKLFL-EKFGI-KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSD 352 (605)
Q Consensus 276 llk~~~-~~~k~IIFv~s~~~~~~L~~~L-~~~gi-~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~ 352 (605)
.++... .+.+++||++++..++.++..| ++++. ....+||+- ..|.+.+++|++|++++||+|..++
T Consensus 297 ~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d--~~R~EkV~~fR~G~~~lLiTTTILE-------- 366 (441)
T COG4098 297 WLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSED--QHRKEKVEAFRDGKITLLITTTILE-------- 366 (441)
T ss_pred HHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccC--ccHHHHHHHHHcCceEEEEEeehhh--------
Confidence 666543 3569999999999999999999 55554 446788875 4689999999999999999999988
Q ss_pred CCCCcccccccCCCCCccccccccccccccCCccEEEEeCCC--CCchhHHHhhcccccCCC--CccEEEEeCCch
Q 007402 353 EGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP--QNAAGYVHRIGRTGRAYN--TGASVSLVSPDE 424 (605)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P--~s~~~yiqRiGRtgR~g~--~G~ai~~v~~~e 424 (605)
||+.||+|++++.-.-- -+.++.+|..||+||.-. .|..+.|-....
T Consensus 367 -------------------------RGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~s 417 (441)
T COG4098 367 -------------------------RGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYGKS 417 (441)
T ss_pred -------------------------cccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEeccch
Confidence 99999999986543222 467899999999999544 566666655433
No 101
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.92 E-value=2.4e-23 Score=236.48 Aligned_cols=317 Identities=19% Similarity=0.215 Sum_probs=232.3
Q ss_pred HHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHH
Q 007402 41 LNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVM 120 (605)
Q Consensus 41 l~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~ 120 (605)
....|| .|-++|++|+..+.+|..|+++||||||||.+.-..+...+.. +.++++..|.++|.+|.+..+.
T Consensus 113 ~~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~--------~qrviYTsPIKALsNQKyrdl~ 183 (1041)
T COG4581 113 AREYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD--------GQRVIYTSPIKALSNQKYRDLL 183 (1041)
T ss_pred HHhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc--------CCceEeccchhhhhhhHHHHHH
Confidence 445788 5899999999999999999999999999999987777666544 6679999999999999999987
Q ss_pred HHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCcHH
Q 007402 121 ALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYED 200 (605)
Q Consensus 121 ~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~~ 200 (605)
..+... .-.+..++|+.+. .....++|.|.+.|.+++..+. ..+..+.+||+||+|.|.+..-.-
T Consensus 184 ~~fgdv----~~~vGL~TGDv~I-------N~~A~clvMTTEILRnMlyrg~----~~~~~i~~ViFDEvHyi~D~eRG~ 248 (1041)
T COG4581 184 AKFGDV----ADMVGLMTGDVSI-------NPDAPCLVMTTEILRNMLYRGS----ESLRDIEWVVFDEVHYIGDRERGV 248 (1041)
T ss_pred HHhhhh----hhhccceecceee-------CCCCceEEeeHHHHHHHhccCc----ccccccceEEEEeeeeccccccch
Confidence 665321 1134566776543 3467889999899999998874 788999999999999999988888
Q ss_pred HHHHHHhhCCCCceEEEEeeecChhHHHHHHHh--cCCCeEEEcCCccCccccccCCCcEEEEEEc-------cccchH-
Q 007402 201 DLKALSAVIPRGCQCLLMSATSSSDVDKLKKLI--LHNPYILTLPEVGDVKDEVIPKNVQQFWISC-------SERDKL- 270 (605)
Q Consensus 201 ~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~--l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~-------~~~~k~- 270 (605)
.++.++-++|...|++++|||+++..+--..+. -..|..+...+ ..+..+.+++..- ++..++
T Consensus 249 VWEE~Ii~lP~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~-------~RpvPL~~~~~~~~~l~~lvde~~~~~ 321 (1041)
T COG4581 249 VWEEVIILLPDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTE-------HRPVPLEHFVYVGKGLFDLVDEKKKFN 321 (1041)
T ss_pred hHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeec-------CCCCCeEEEEecCCceeeeecccccch
Confidence 899999999999999999999998754322222 23333333222 2233344443322 111110
Q ss_pred ----------------------------------------------HHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHH
Q 007402 271 ----------------------------------------------LYILTLLKLELVQKKALIFTNTIDMAFRLKLFLE 304 (605)
Q Consensus 271 ----------------------------------------------~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~ 304 (605)
.-+...+.. ..--++|+|+-++..|+.++..+.
T Consensus 322 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~-~~~lP~I~F~FSr~~Ce~~a~~~~ 400 (1041)
T COG4581 322 AENFPSANRSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDK-DNLLPAIVFSFSRRGCEEAAQILS 400 (1041)
T ss_pred hhcchhhhhhhhccchhccccCccccccccccccccCCcccccccchHHHhhhhh-hcCCceEEEEEchhhHHHHHHHhc
Confidence 001111110 112389999999999999887775
Q ss_pred Hc----------------------------CCc-------------EEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 007402 305 KF----------------------------GIK-------------SAILNAELPQNSRLHILEEFNAGLFDYLIATDDT 343 (605)
Q Consensus 305 ~~----------------------------gi~-------------~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~ 343 (605)
.. +++ ..++|++|-+..+..+...|..|.+.|++||.+.
T Consensus 401 ~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~ 480 (1041)
T COG4581 401 TLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETF 480 (1041)
T ss_pred ccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhh
Confidence 21 221 3478999999999999999999999999999885
Q ss_pred CcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEE----EeCC----CCCchhHHHhhcccccCCC--C
Q 007402 344 QTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVI----NFEM----PQNAAGYVHRIGRTGRAYN--T 413 (605)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI----~fd~----P~s~~~yiqRiGRtgR~g~--~ 413 (605)
+ -|++.|.=++|+ .||- +-++..|+|..||+||.|. .
T Consensus 481 s---------------------------------~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~ 527 (1041)
T COG4581 481 A---------------------------------IGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVL 527 (1041)
T ss_pred h---------------------------------hhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhcccccccc
Confidence 4 499999766554 3442 4578999999999999888 5
Q ss_pred ccEEEEeCC
Q 007402 414 GASVSLVSP 422 (605)
Q Consensus 414 G~ai~~v~~ 422 (605)
|.+|+.-.+
T Consensus 528 G~vI~~~~~ 536 (1041)
T COG4581 528 GTVIVIEPP 536 (1041)
T ss_pred ceEEEecCC
Confidence 666666444
No 102
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.91 E-value=7.6e-22 Score=218.73 Aligned_cols=284 Identities=24% Similarity=0.356 Sum_probs=197.5
Q ss_pred CCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHH
Q 007402 45 GIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIE 124 (605)
Q Consensus 45 g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~ 124 (605)
|| .|+..|.-....++.|+.+-+.||||.|||. |.+.+--.+ . ..+.+++||+||..|+.|+++.+.++..
T Consensus 80 G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTT-fg~~~sl~~-a------~kgkr~yii~PT~~Lv~Q~~~kl~~~~e 150 (1187)
T COG1110 80 GF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTT-FGLLMSLYL-A------KKGKRVYIIVPTTTLVRQVYERLKKFAE 150 (1187)
T ss_pred CC-CchHHHHHHHHHHHcCCceEEEcCCCCchhH-HHHHHHHHH-H------hcCCeEEEEecCHHHHHHHHHHHHHHHh
Confidence 66 8999999999999999999999999999996 433332222 2 3368899999999999999999999987
Q ss_pred HhcCCcceEEEEEeCCCCHHHH----HHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCC---
Q 007402 125 LCKGQVQLKVVQLTSSMPASDL----RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYG--- 197 (605)
Q Consensus 125 ~~~~~~~i~v~~l~~~~~~~~~----~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g--- 197 (605)
..+ ...+.++ +++..+.... .....+.+||+|+|.+.|...... +.--+++++++|.+|.++-.+
T Consensus 151 ~~~-~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~------L~~~kFdfifVDDVDA~LkaskNv 222 (1187)
T COG1110 151 DAG-SLDVLVV-YHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE------LSKLKFDFIFVDDVDAILKASKNV 222 (1187)
T ss_pred hcC-Ccceeee-eccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH------hcccCCCEEEEccHHHHHhccccH
Confidence 665 2355565 6776555442 334457899999998777665543 222468999999999876432
Q ss_pred --------cHHH-----------------------HHHHHhhC--------CCCceEEEEeeecChhH--HHHHHHhcCC
Q 007402 198 --------YEDD-----------------------LKALSAVI--------PRGCQCLLMSATSSSDV--DKLKKLILHN 236 (605)
Q Consensus 198 --------~~~~-----------------------l~~i~~~l--------p~~~q~il~SATl~~~v--~~l~~~~l~~ 236 (605)
|.++ ++.+.... .+..+++.+|||..+.- ..|....+.-
T Consensus 223 DriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgF 302 (1187)
T COG1110 223 DRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGF 302 (1187)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCC
Confidence 2221 11111110 13468899999986543 2233333321
Q ss_pred CeEEEcCCccCccccccCCCcEEEEEEccccchHHHHHHHHHhhcCCCeEEEEecc---hhHHHHHHHHHHHcCCcEEEE
Q 007402 237 PYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNT---IDMAFRLKLFLEKFGIKSAIL 313 (605)
Q Consensus 237 p~~i~l~~~~~~~~~~~~~~l~q~~~~~~~~~k~~~l~~llk~~~~~~k~IIFv~s---~~~~~~L~~~L~~~gi~~~~l 313 (605)
- +.. ......|+...|+..+..++ +..+++.- +.-.||||+. .+.++.++.+|+..|+++..+
T Consensus 303 e----vG~-----~~~~LRNIvD~y~~~~~~e~---~~elvk~l--G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~ 368 (1187)
T COG1110 303 E----VGS-----GGEGLRNIVDIYVESESLEK---VVELVKKL--GDGGLIFVPIDYGREKAEELAEYLRSHGINAELI 368 (1187)
T ss_pred c----cCc-----cchhhhheeeeeccCccHHH---HHHHHHHh--CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEe
Confidence 1 111 22334466666665533333 33444432 3468999999 999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccc-cccccccC-CccEEEEe
Q 007402 314 NAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFG-VVRGIDFK-NVHTVINF 391 (605)
Q Consensus 314 ~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-v~rGiD~~-~v~~VI~f 391 (605)
|++- ...++.|..|++++||+... -|| +.||||+| .+..+|++
T Consensus 369 ~a~~-----~~~le~F~~GeidvLVGvAs------------------------------yYG~lVRGlDLP~rirYaIF~ 413 (1187)
T COG1110 369 HAEK-----EEALEDFEEGEVDVLVGVAS------------------------------YYGVLVRGLDLPHRIRYAVFY 413 (1187)
T ss_pred eccc-----hhhhhhhccCceeEEEEecc------------------------------cccceeecCCchhheeEEEEe
Confidence 9842 56789999999999999854 233 34899988 67788888
Q ss_pred CCC
Q 007402 392 EMP 394 (605)
Q Consensus 392 d~P 394 (605)
+.|
T Consensus 414 GvP 416 (1187)
T COG1110 414 GVP 416 (1187)
T ss_pred cCC
Confidence 877
No 103
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.89 E-value=2e-21 Score=224.79 Aligned_cols=319 Identities=18% Similarity=0.232 Sum_probs=210.8
Q ss_pred CChHHHHHHHHHHh----CCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHH
Q 007402 48 KPTLIQQASIPLIL----EGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALI 123 (605)
Q Consensus 48 ~pt~iQ~~aIp~~l----~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~ 123 (605)
++.++|..++.+++ .|.+.|+...+|.|||+..+ .++..+.... .....+|||||. .|..||.+++..++
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaI-alL~~L~~~~----~~~gp~LIVvP~-SlL~nW~~Ei~kw~ 242 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTI-SLLGYLHEYR----GITGPHMVVAPK-STLGNWMNEIRRFC 242 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHH-HHHHHHHHhc----CCCCCEEEEeCh-HHHHHHHHHHHHHC
Confidence 68999999999876 57789999999999998653 3344333211 123458999995 66788999888765
Q ss_pred HHhcCCcceEEEEEeCCCCHHHHH--H-HHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCcHH
Q 007402 124 ELCKGQVQLKVVQLTSSMPASDLR--A-ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYED 200 (605)
Q Consensus 124 ~~~~~~~~i~v~~l~~~~~~~~~~--~-~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~~ 200 (605)
. .++++.++|........ . .....++|||+|++.+...... +.--.+.+|||||||.+-+. ..
T Consensus 243 p------~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~------L~k~~W~~VIvDEAHrIKN~--~S 308 (1033)
T PLN03142 243 P------VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA------LKRFSWRYIIIDEAHRIKNE--NS 308 (1033)
T ss_pred C------CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH------hccCCCCEEEEcCccccCCH--HH
Confidence 2 46777777754322111 1 2235689999999887654321 22235789999999998764 33
Q ss_pred HHHHHHhhCCCCceEEEEeeecC-hhHHHHHHHh-cCC----------------------------------CeEEEcCC
Q 007402 201 DLKALSAVIPRGCQCLLMSATSS-SDVDKLKKLI-LHN----------------------------------PYILTLPE 244 (605)
Q Consensus 201 ~l~~i~~~lp~~~q~il~SATl~-~~v~~l~~~~-l~~----------------------------------p~~i~l~~ 244 (605)
.+...+..+.. ...+++|+|+- +....|..++ +-. |.++.-..
T Consensus 309 klskalr~L~a-~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~K 387 (1033)
T PLN03142 309 LLSKTMRLFST-NYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLK 387 (1033)
T ss_pred HHHHHHHHhhc-CcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhH
Confidence 44555555543 44688999963 2222222211 000 11100000
Q ss_pred ccCccccccCCCcEEEEEEcc-----------------------------------------------------------
Q 007402 245 VGDVKDEVIPKNVQQFWISCS----------------------------------------------------------- 265 (605)
Q Consensus 245 ~~~~~~~~~~~~l~q~~~~~~----------------------------------------------------------- 265 (605)
..+... .+ ......+.|.
T Consensus 388 -sdV~~~-LP-pK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e 464 (1033)
T PLN03142 388 -SDVEKG-LP-PKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGE 464 (1033)
T ss_pred -HHHhhh-CC-CceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchh
Confidence 000000 00 0011111111
Q ss_pred ----ccchHHHHHHHHHh-hcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcC---CCcEE
Q 007402 266 ----ERDKLLYILTLLKL-ELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAG---LFDYL 337 (605)
Q Consensus 266 ----~~~k~~~l~~llk~-~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g---~~~iL 337 (605)
...|+.+|..++.. ...+.++|||+........|..+|...|+..+.++|.++...|..+++.|+.. .+-+|
T Consensus 465 ~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfL 544 (1033)
T PLN03142 465 HLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFL 544 (1033)
T ss_pred HHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEE
Confidence 11233333333332 22356999999999999999999999999999999999999999999999864 34578
Q ss_pred EEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCccE-
Q 007402 338 IATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGAS- 416 (605)
Q Consensus 338 IaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~a- 416 (605)
++|.... .|||+..+++||+||+|||+..+.|++||+.|.|+...+
T Consensus 545 LSTrAGG---------------------------------lGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~ 591 (1033)
T PLN03142 545 LSTRAGG---------------------------------LGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQ 591 (1033)
T ss_pred Eeccccc---------------------------------cCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEE
Confidence 8888765 599999999999999999999999999999999997655
Q ss_pred -EEEeCCc
Q 007402 417 -VSLVSPD 423 (605)
Q Consensus 417 -i~~v~~~ 423 (605)
+.|++..
T Consensus 592 VyRLIt~g 599 (1033)
T PLN03142 592 VFRFCTEY 599 (1033)
T ss_pred EEEEEeCC
Confidence 4445543
No 104
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=4.7e-20 Score=202.53 Aligned_cols=323 Identities=20% Similarity=0.186 Sum_probs=227.8
Q ss_pred CCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHH
Q 007402 44 KGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALI 123 (605)
Q Consensus 44 ~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~ 123 (605)
+|. .|+++|--+.-.++.|+ |+.+.||+|||++..+|++...+. |..+.|++|+..||.|-++++..++
T Consensus 75 lg~-r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~--------G~~VhvvT~NdyLA~RDae~m~~ly 143 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQ--------GRRVHVITVNDYLARRDAEWMGPLY 143 (764)
T ss_pred cCC-CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHc--------CCCeEEEcCCHHHHHHHHHHHHHHH
Confidence 576 79999999998888885 889999999999999999988777 5669999999999999999999999
Q ss_pred HHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchH-HHHHhcCCCC--CcccCCCceEEEEeCcchhccC----
Q 007402 124 ELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCM-PKCLSTGVLQ--SKSFSDSLKILVLDEADLLLSY---- 196 (605)
Q Consensus 124 ~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l-~~~l~~~~~~--~~~~l~~l~~lViDEad~i~~~---- 196 (605)
.++ ++++..+.++.+....+..+ .+||+++|..-+ .++|+.+... .......+.+.||||+|.|+=.
T Consensus 144 ~~L----GLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArt 217 (764)
T PRK12326 144 EAL----GLTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALV 217 (764)
T ss_pred Hhc----CCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccC
Confidence 987 78999999988877666655 589999999765 3444443211 1234466889999999976511
Q ss_pred -----------CcHHHHHHHHhhCCCC-----------------------------------------------------
Q 007402 197 -----------GYEDDLKALSAVIPRG----------------------------------------------------- 212 (605)
Q Consensus 197 -----------g~~~~l~~i~~~lp~~----------------------------------------------------- 212 (605)
.....+..+...+..+
T Consensus 218 PLiISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l 297 (764)
T PRK12326 218 PLVLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHAL 297 (764)
T ss_pred ceeeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHH
Confidence 0111122222222110
Q ss_pred -----------------------------------------------------------------ceEEEEeeecChhHH
Q 007402 213 -----------------------------------------------------------------CQCLLMSATSSSDVD 227 (605)
Q Consensus 213 -----------------------------------------------------------------~q~il~SATl~~~v~ 227 (605)
..+.+||.|.....+
T Consensus 298 ~~~d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~ 377 (764)
T PRK12326 298 LQRDVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGE 377 (764)
T ss_pred HhcCCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHH
Confidence 133445555555545
Q ss_pred HHHHHhcCCCeEEEcCCccCccccccCCCcEEEEEEccccchHHHHHHHH-HhhcCCCeEEEEecchhHHHHHHHHHHHc
Q 007402 228 KLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLL-KLELVQKKALIFTNTIDMAFRLKLFLEKF 306 (605)
Q Consensus 228 ~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~~~~~k~~~l~~ll-k~~~~~~k~IIFv~s~~~~~~L~~~L~~~ 306 (605)
++.+.|--+ ++.++... + ...... .-.+.....+|+..+..-+ +....+.|+||.+.|++.++.|...|.+.
T Consensus 378 Ef~~iY~l~--Vv~IPtnk---p-~~R~d~-~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~ 450 (764)
T PRK12326 378 QLRQFYDLG--VSVIPPNK---P-NIREDE-ADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAA 450 (764)
T ss_pred HHHHHhCCc--EEECCCCC---C-ceeecC-CCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhC
Confidence 554444322 22222200 0 000111 1123344566776665544 45556779999999999999999999999
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCc-
Q 007402 307 GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV- 385 (605)
Q Consensus 307 gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v- 385 (605)
|++..+||+.-...+-.-|-+.=+. -.|.|||+++. ||.||.--
T Consensus 451 gI~h~vLNAk~~~~EA~IIa~AG~~--gaVTIATNMAG---------------------------------RGTDIkLg~ 495 (764)
T PRK12326 451 GVPAVVLNAKNDAEEARIIAEAGKY--GAVTVSTQMAG---------------------------------RGTDIRLGG 495 (764)
T ss_pred CCcceeeccCchHhHHHHHHhcCCC--CcEEEEecCCC---------------------------------CccCeecCC
Confidence 9999999997554432222222223 36999999987 89998722
Q ss_pred --------------cEEEEeCCCCCchhHHHhhcccccCCCCccEEEEeCCchh
Q 007402 386 --------------HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM 425 (605)
Q Consensus 386 --------------~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~~v~~~e~ 425 (605)
=+||-...|.|..---|-.||+||.|.+|.+-.|++-+|.
T Consensus 496 ~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~lSleDd 549 (764)
T PRK12326 496 SDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVSLEDD 549 (764)
T ss_pred CcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEEEcchh
Confidence 2799999999999999999999999999999999997664
No 105
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.88 E-value=6.6e-22 Score=218.38 Aligned_cols=337 Identities=21% Similarity=0.223 Sum_probs=230.3
Q ss_pred CCHHHHHH-HHHCCCCCChHHHHHHH--HHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcH
Q 007402 33 LDLRLVHA-LNKKGIQKPTLIQQASI--PLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTR 109 (605)
Q Consensus 33 L~~~l~~a-l~~~g~~~pt~iQ~~aI--p~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtr 109 (605)
+.+.+... ....|....+.+|.+++ |.++++++.|..+||+.|||++.-+.++..++-. ...++.+.|-.
T Consensus 207 ~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~-------rr~~llilp~v 279 (1008)
T KOG0950|consen 207 LPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR-------RRNVLLILPYV 279 (1008)
T ss_pred CchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH-------hhceeEeccee
Confidence 44444444 44469999999999998 7788999999999999999999999999888764 23488888988
Q ss_pred HHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeC
Q 007402 110 ELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDE 189 (605)
Q Consensus 110 eLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDE 189 (605)
..++.-...+..+.... ++.+-.+.|......... .-++.|||-++-..++..-. ....+..+++||+||
T Consensus 280 siv~Ek~~~l~~~~~~~----G~~ve~y~g~~~p~~~~k----~~sv~i~tiEkanslin~li--e~g~~~~~g~vvVdE 349 (1008)
T KOG0950|consen 280 SIVQEKISALSPFSIDL----GFPVEEYAGRFPPEKRRK----RESVAIATIEKANSLINSLI--EQGRLDFLGMVVVDE 349 (1008)
T ss_pred ehhHHHHhhhhhhcccc----CCcchhhcccCCCCCccc----ceeeeeeehHhhHhHHHHHH--hcCCccccCcEEEee
Confidence 77777666666665433 667766666655433222 45899999998665554322 124567799999999
Q ss_pred cchhccCCcHHHHHHHHhhC-----CCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEEEEEc
Q 007402 190 ADLLLSYGYEDDLKALSAVI-----PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264 (605)
Q Consensus 190 ad~i~~~g~~~~l~~i~~~l-----p~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~ 264 (605)
.|.+.+.+....++.++..+ ....|+|+||||+++. ..+. .++..-++..-.......+......+ .+..
T Consensus 350 lhmi~d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~-~lL~-~~L~A~~y~t~fRPv~L~E~ik~G~~---i~~~ 424 (1008)
T KOG0950|consen 350 LHMIGDKGRGAILELLLAKILYENLETSVQIIGMSATIPNN-SLLQ-DWLDAFVYTTRFRPVPLKEYIKPGSL---IYES 424 (1008)
T ss_pred eeeeeccccchHHHHHHHHHHHhccccceeEeeeecccCCh-HHHH-HHhhhhheecccCcccchhccCCCcc---cccc
Confidence 99999988777777776532 3356899999999863 2232 23332222110000000000000000 0000
Q ss_pred cccchHHHHHHHH-------------------HhhcCCC-eEEEEecchhHHHHHHHHHHHc------------------
Q 007402 265 SERDKLLYILTLL-------------------KLELVQK-KALIFTNTIDMAFRLKLFLEKF------------------ 306 (605)
Q Consensus 265 ~~~~k~~~l~~ll-------------------k~~~~~~-k~IIFv~s~~~~~~L~~~L~~~------------------ 306 (605)
+ +...+..+. -.....+ .+||||+++..|+.++..+...
T Consensus 425 ~---r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s 501 (1008)
T KOG0950|consen 425 S---RNKVLREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLS 501 (1008)
T ss_pred h---hhHHHHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHH
Confidence 0 111111111 1111233 5999999999999888665321
Q ss_pred --------------------CCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCcccccccCCC
Q 007402 307 --------------------GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHP 366 (605)
Q Consensus 307 --------------------gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (605)
...++.+|+++....|..+...|+.|...|++||+.++
T Consensus 502 ~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTla---------------------- 559 (1008)
T KOG0950|consen 502 ISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLA---------------------- 559 (1008)
T ss_pred HHhHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhh----------------------
Confidence 24567899999999999999999999999999999965
Q ss_pred CCccccccccccccccCCccEEEEeCC----CCCchhHHHhhcccccCCC--CccEEEEeCCchhhH
Q 007402 367 KAKLDSEFGVVRGIDFKNVHTVINFEM----PQNAAGYVHRIGRTGRAYN--TGASVSLVSPDEMKI 427 (605)
Q Consensus 367 ~~~~~~~~gv~rGiD~~~v~~VI~fd~----P~s~~~yiqRiGRtgR~g~--~G~ai~~v~~~e~~~ 427 (605)
.|++.|...++|-+-. +.+.-.|.|++|||||+|- .|.+++++.+.+...
T Consensus 560 -----------aGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~ 615 (1008)
T KOG0950|consen 560 -----------AGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKR 615 (1008)
T ss_pred -----------ccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccchhH
Confidence 6999999888876433 3467899999999999876 788999998887643
No 106
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.88 E-value=1.4e-21 Score=223.93 Aligned_cols=332 Identities=21% Similarity=0.141 Sum_probs=212.3
Q ss_pred CChHHHHHHHHHHhCC---C-cEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHH
Q 007402 48 KPTLIQQASIPLILEG---K-DVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALI 123 (605)
Q Consensus 48 ~pt~iQ~~aIp~~l~g---k-dvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~ 123 (605)
.+++.|..++..+++. . .+++.||||+|||.+.++++...+... .....+++++.|++.+++++++.+....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~----~~~~~r~i~vlP~~t~ie~~~~r~~~~~ 270 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK----IKLKSRVIYVLPFRTIIEDMYRRAKEIF 270 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc----ccccceEEEEccHHHHHHHHHHHHHhhh
Confidence 3489999999998876 4 789999999999999999998876552 1247889999999999999999999876
Q ss_pred HHhcCCcceEEEEEeCCCCHHHHHHH--------------HcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeC
Q 007402 124 ELCKGQVQLKVVQLTSSMPASDLRAA--------------LAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDE 189 (605)
Q Consensus 124 ~~~~~~~~i~v~~l~~~~~~~~~~~~--------------l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDE 189 (605)
..... ....+.+.......... -..-..+.++||-.+...............=..+.+|+||
T Consensus 271 ~~~~~----~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE 346 (733)
T COG1203 271 GLFSV----IGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDE 346 (733)
T ss_pred ccccc----ccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhcc
Confidence 54321 11101222111100000 0011234444444443321111100000011235899999
Q ss_pred cchhccCCcHHHHHHHHhhCC-CCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEEEEEc-ccc
Q 007402 190 ADLLLSYGYEDDLKALSAVIP-RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC-SER 267 (605)
Q Consensus 190 ad~i~~~g~~~~l~~i~~~lp-~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~-~~~ 267 (605)
+|.+........+..++..+. .+..+++||||+|+.........+.+...+....... .......+.+....+ ...
T Consensus 347 ~h~~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~--~~~~e~~~~~~~~~~~~~~ 424 (733)
T COG1203 347 VHLYADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFC--PKEDEPGLKRKERVDVEDG 424 (733)
T ss_pred HHhhcccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceecccccc--ccccccccccccchhhhhh
Confidence 999887743344444444333 4788999999999998777666665544443321000 000001111111111 111
Q ss_pred chHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHH----cCCCcEEEEcCCC
Q 007402 268 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN----AGLFDYLIATDDT 343 (605)
Q Consensus 268 ~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~----~g~~~iLIaTd~~ 343 (605)
................++++|.|||++.|.+++..|+..+.+++.+||.+....|...++++. .+...|+|||++.
T Consensus 425 ~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVI 504 (733)
T COG1203 425 PQEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVI 504 (733)
T ss_pred hhHhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEE
Confidence 001112222222233679999999999999999999998888999999999999998888654 5788999999998
Q ss_pred CcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCC--CCccEEEEeC
Q 007402 344 QTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAY--NTGASVSLVS 421 (605)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g--~~G~ai~~v~ 421 (605)
| -|+|+. .+++| --+..+.+.|||+||++|.| ..|.++.+..
T Consensus 505 E---------------------------------agvDid-fd~mI--Te~aPidSLIQR~GRv~R~g~~~~~~~~v~~~ 548 (733)
T COG1203 505 E---------------------------------AGVDID-FDVLI--TELAPIDSLIQRAGRVNRHGKKENGKIYVYND 548 (733)
T ss_pred E---------------------------------EEeccc-cCeee--ecCCCHHHHHHHHHHHhhcccccCCceeEeec
Confidence 8 499984 55554 34666899999999999999 5777777776
Q ss_pred Cchh
Q 007402 422 PDEM 425 (605)
Q Consensus 422 ~~e~ 425 (605)
....
T Consensus 549 ~~~~ 552 (733)
T COG1203 549 EERG 552 (733)
T ss_pred ccCC
Confidence 5444
No 107
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.88 E-value=4.8e-20 Score=207.32 Aligned_cols=133 Identities=22% Similarity=0.352 Sum_probs=115.7
Q ss_pred chHHHHHHHHHhh-cCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCcc
Q 007402 268 DKLLYILTLLKLE-LVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTK 346 (605)
Q Consensus 268 ~k~~~l~~llk~~-~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~ 346 (605)
.++..++..++.. ..+.++||||+++..+.+|..+|...|+.+..+||++++.+|..++..|+.|.++|||||+.+.
T Consensus 426 ~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~-- 503 (655)
T TIGR00631 426 GQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLR-- 503 (655)
T ss_pred chHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhc--
Confidence 3445555555543 3356899999999999999999999999999999999999999999999999999999999976
Q ss_pred cccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeC-----CCCCchhHHHhhcccccCCCCccEEEEeC
Q 007402 347 EKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFE-----MPQNAAGYVHRIGRTGRAYNTGASVSLVS 421 (605)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd-----~P~s~~~yiqRiGRtgR~g~~G~ai~~v~ 421 (605)
||+|+|++++||++| .|.+..+|+||+|||||. ..|.+++|+.
T Consensus 504 -------------------------------rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~ 551 (655)
T TIGR00631 504 -------------------------------EGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYAD 551 (655)
T ss_pred -------------------------------CCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEc
Confidence 899999999999998 899999999999999998 6899999999
Q ss_pred CchhhHHHHHHHH
Q 007402 422 PDEMKIFEEIKSF 434 (605)
Q Consensus 422 ~~e~~~~~~~~~~ 434 (605)
..+......+.+.
T Consensus 552 ~~~~~~~~ai~~~ 564 (655)
T TIGR00631 552 KITDSMQKAIEET 564 (655)
T ss_pred CCCHHHHHHHHHH
Confidence 8776555555443
No 108
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.86 E-value=2.7e-19 Score=201.11 Aligned_cols=322 Identities=23% Similarity=0.248 Sum_probs=221.3
Q ss_pred CCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHH
Q 007402 44 KGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALI 123 (605)
Q Consensus 44 ~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~ 123 (605)
+|. .|+++|-..--.+.+|+ |+.+.||+|||+++.+|++...+. |..+.|++||..||.|-++++..++
T Consensus 79 lGm-~~ydVQliGg~~Lh~G~--iaEM~TGEGKTLvA~l~a~l~al~--------G~~VhvvT~ndyLA~RD~e~m~~l~ 147 (913)
T PRK13103 79 MGM-RHFDVQLIGGMTLHEGK--IAEMRTGEGKTLVGTLAVYLNALS--------GKGVHVVTVNDYLARRDANWMRPLY 147 (913)
T ss_pred hCC-CcchhHHHhhhHhccCc--cccccCCCCChHHHHHHHHHHHHc--------CCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 574 78999987776666665 999999999999999999987776 6669999999999999999999999
Q ss_pred HHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchH-HHHHhcCCCC--CcccCCCceEEEEeCcchhccC----
Q 007402 124 ELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCM-PKCLSTGVLQ--SKSFSDSLKILVLDEADLLLSY---- 196 (605)
Q Consensus 124 ~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l-~~~l~~~~~~--~~~~l~~l~~lViDEad~i~~~---- 196 (605)
.++ ++++..+.++.+....+..+. +||+++|..-+ .++|+.+... .......+.++||||+|.++=.
T Consensus 148 ~~l----Gl~v~~i~~~~~~~err~~Y~--~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArt 221 (913)
T PRK13103 148 EFL----GLSVGIVTPFQPPEEKRAAYA--ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEART 221 (913)
T ss_pred ccc----CCEEEEECCCCCHHHHHHHhc--CCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCC
Confidence 887 789999999888777666654 89999999876 4555544211 1234478999999999986511
Q ss_pred -----C-------cHHHHHHHHhhCC--------------------CCc-------------------------------
Q 007402 197 -----G-------YEDDLKALSAVIP--------------------RGC------------------------------- 213 (605)
Q Consensus 197 -----g-------~~~~l~~i~~~lp--------------------~~~------------------------------- 213 (605)
| ....+..+...+. +..
T Consensus 222 PLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~ 301 (913)
T PRK13103 222 PLIISGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSA 301 (913)
T ss_pred ceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccCh
Confidence 0 1111222222110 001
Q ss_pred --------------------------------------------------------------------------------
Q 007402 214 -------------------------------------------------------------------------------- 213 (605)
Q Consensus 214 -------------------------------------------------------------------------------- 213 (605)
T Consensus 302 ~~~~~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfF 381 (913)
T PRK13103 302 HNLGLLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYF 381 (913)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHH
Confidence
Q ss_pred ----eEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEEEEEccccchHHHHHHHHH-hhcCCCeEEE
Q 007402 214 ----QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLK-LELVQKKALI 288 (605)
Q Consensus 214 ----q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~~~~~k~~~l~~llk-~~~~~~k~II 288 (605)
.+.+||.|......++.+.|--+- +.++. ..+....-..-.+.....+|+..+..-++ .+..+.|+||
T Consensus 382 r~Y~kLsGMTGTa~te~~Ef~~iY~l~V--v~IPT-----nkP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLV 454 (913)
T PRK13103 382 RLYNKLSGMTGTADTEAFEFRQIYGLDV--VVIPP-----NKPLARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLV 454 (913)
T ss_pred HhcchhccCCCCCHHHHHHHHHHhCCCE--EECCC-----CCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 122233333333233332221111 11111 00000001111244556678776665544 4455779999
Q ss_pred EecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcC-CCcEEEEcCCCCcccccccCCCCCcccccccCCCC
Q 007402 289 FTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAG-LFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPK 367 (605)
Q Consensus 289 Fv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g-~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (605)
-+.|++.++.|..+|.+.|++.-+||+.....+-.-|. +.| .-.|.|||+++.
T Consensus 455 GT~SVe~SE~ls~~L~~~gi~h~VLNAk~~~~EA~IIa---~AG~~GaVTIATNMAG----------------------- 508 (913)
T PRK13103 455 GTATIETSEHMSNLLKKEGIEHKVLNAKYHEKEAEIIA---QAGRPGALTIATNMAG----------------------- 508 (913)
T ss_pred EeCCHHHHHHHHHHHHHcCCcHHHhccccchhHHHHHH---cCCCCCcEEEeccCCC-----------------------
Confidence 99999999999999999999999999975544333333 344 346999999987
Q ss_pred CccccccccccccccC-------------------------------------CccEEEEeCCCCCchhHHHhhcccccC
Q 007402 368 AKLDSEFGVVRGIDFK-------------------------------------NVHTVINFEMPQNAAGYVHRIGRTGRA 410 (605)
Q Consensus 368 ~~~~~~~gv~rGiD~~-------------------------------------~v~~VI~fd~P~s~~~yiqRiGRtgR~ 410 (605)
||-||. +==+||--..|.|..---|-.||+||.
T Consensus 509 ----------RGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQ 578 (913)
T PRK13103 509 ----------RGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQ 578 (913)
T ss_pred ----------CCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccC
Confidence 888885 112688888999999999999999999
Q ss_pred CCCccEEEEeCCchh
Q 007402 411 YNTGASVSLVSPDEM 425 (605)
Q Consensus 411 g~~G~ai~~v~~~e~ 425 (605)
|.+|.+-.|++-+|.
T Consensus 579 GDPGsS~f~lSlED~ 593 (913)
T PRK13103 579 GDPGSSRFYLSLEDS 593 (913)
T ss_pred CCCCceEEEEEcCcH
Confidence 999999999997665
No 109
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.86 E-value=2.9e-19 Score=208.86 Aligned_cols=97 Identities=20% Similarity=0.284 Sum_probs=74.3
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHH----HHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCc
Q 007402 33 LDLRLVHALNKKGIQKPTLIQQASIP----LILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPT 108 (605)
Q Consensus 33 L~~~l~~al~~~g~~~pt~iQ~~aIp----~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPt 108 (605)
+++.+.+.+...||+ ++|.|.+++. .+.+|+++++.||||+|||+||++|++..... +.+++|.+||
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~~--------~~~vvi~t~t 301 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAIT--------EKPVVISTNT 301 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhcC--------CCeEEEEeCc
Confidence 455777888889996 8999998665 55578999999999999999999999876541 4479999999
Q ss_pred HHHHHHHHH-HHHHHHHHhcCCcceEEEEEeCC
Q 007402 109 RELCQQVYS-EVMALIELCKGQVQLKVVQLTSS 140 (605)
Q Consensus 109 reLa~Qv~~-~~~~l~~~~~~~~~i~v~~l~~~ 140 (605)
++|..|+.. .+..+...++. .++++.+.|.
T Consensus 302 ~~Lq~Ql~~~~~~~l~~~~~~--~~~~~~~kG~ 332 (850)
T TIGR01407 302 KVLQSQLLEKDIPLLNEILNF--KINAALIKGK 332 (850)
T ss_pred HHHHHHHHHHHHHHHHHHcCC--CceEEEEEcc
Confidence 999999965 46555554433 3555554443
No 110
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.85 E-value=3.6e-19 Score=198.71 Aligned_cols=313 Identities=24% Similarity=0.248 Sum_probs=205.4
Q ss_pred CCChHHHHHHHHHHhCC----CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHH
Q 007402 47 QKPTLIQQASIPLILEG----KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMAL 122 (605)
Q Consensus 47 ~~pt~iQ~~aIp~~l~g----kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l 122 (605)
...++-|+.|+..+.+. +-.|+.+.||||||.+|+-.|-+.+-. |..+|||||-..|..|+.+.|+..
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~--------GkqvLvLVPEI~Ltpq~~~rf~~r 268 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ--------GKQVLVLVPEIALTPQLLARFKAR 268 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc--------CCEEEEEeccccchHHHHHHHHHH
Confidence 45678999999988766 679999999999999997766665543 677999999999999999999987
Q ss_pred HHHhcCCcceEEEEEeCCCCH----HHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccC--
Q 007402 123 IELCKGQVQLKVVQLTSSMPA----SDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSY-- 196 (605)
Q Consensus 123 ~~~~~~~~~i~v~~l~~~~~~----~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~-- 196 (605)
+ +.++..++++.+. ..+.....+...|||+| ...++ ..+++|.+|||||-|--.-.
T Consensus 269 F-------g~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGt---------RSAlF--~Pf~~LGLIIvDEEHD~sYKq~ 330 (730)
T COG1198 269 F-------GAKVAVLHSGLSPGERYRVWRRARRGEARVVIGT---------RSALF--LPFKNLGLIIVDEEHDSSYKQE 330 (730)
T ss_pred h-------CCChhhhcccCChHHHHHHHHHHhcCCceEEEEe---------chhhc--CchhhccEEEEeccccccccCC
Confidence 6 4567777777665 34566677889999999 22222 56789999999999974311
Q ss_pred ---C-cHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEEEEEccccch---
Q 007402 197 ---G-YEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDK--- 269 (605)
Q Consensus 197 ---g-~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~~~~~k--- 269 (605)
. +..++.-..... .++++||-|||++ ++.+....-..-..+.+..... ......+.-.-+.....+.
T Consensus 331 ~~prYhARdvA~~Ra~~-~~~pvvLgSATPS--LES~~~~~~g~y~~~~L~~R~~---~a~~p~v~iiDmr~e~~~~~~~ 404 (730)
T COG1198 331 DGPRYHARDVAVLRAKK-ENAPVVLGSATPS--LESYANAESGKYKLLRLTNRAG---RARLPRVEIIDMRKEPLETGRS 404 (730)
T ss_pred cCCCcCHHHHHHHHHHH-hCCCEEEecCCCC--HHHHHhhhcCceEEEEcccccc---ccCCCcceEEeccccccccCcc
Confidence 1 234444444433 4789999999988 3333333111123333332111 1111111111111111111
Q ss_pred -HHHHHHHHHhhc-CCCeEEEEecchh-----------------------------------------------------
Q 007402 270 -LLYILTLLKLEL-VQKKALIFTNTID----------------------------------------------------- 294 (605)
Q Consensus 270 -~~~l~~llk~~~-~~~k~IIFv~s~~----------------------------------------------------- 294 (605)
-..++..++..+ .+.++|+|+|.+-
T Consensus 405 lS~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~ 484 (730)
T COG1198 405 LSPALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSE 484 (730)
T ss_pred CCHHHHHHHHHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCC
Confidence 123333333333 3446777744432
Q ss_pred -------HHHHHHHHHHHc--CCcEEEEcCCCCHHH--HHHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCccccccc
Q 007402 295 -------MAFRLKLFLEKF--GIKSAILNAELPQNS--RLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSK 363 (605)
Q Consensus 295 -------~~~~L~~~L~~~--gi~~~~l~~~l~~~~--R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~ 363 (605)
-++++++.|..+ +.++..+.++..... -...+..|.+|+.+|||.|++.+
T Consensus 485 ~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmia------------------- 545 (730)
T COG1198 485 HLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIA------------------- 545 (730)
T ss_pred eeEEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhh-------------------
Confidence 345555555543 567777777776544 35679999999999999999965
Q ss_pred CCCCCccccccccccccccCCccEEEEeCCCC------------CchhHHHhhcccccCCCCccEEEEeCCch
Q 007402 364 KHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQ------------NAAGYVHRIGRTGRAYNTGASVSLVSPDE 424 (605)
Q Consensus 364 ~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~------------s~~~yiqRiGRtgR~g~~G~ai~~v~~~e 424 (605)
.|.|||+|+.|.-.|.-. +..-++|-.||+||++.+|.++.-...-+
T Consensus 546 --------------KG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~ 604 (730)
T COG1198 546 --------------KGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPD 604 (730)
T ss_pred --------------cCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCC
Confidence 699999999976544321 24566788999999999998876554433
No 111
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.84 E-value=1.8e-18 Score=195.91 Aligned_cols=123 Identities=22% Similarity=0.356 Sum_probs=108.6
Q ss_pred hHHHHHHHHHhhc-CCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCccc
Q 007402 269 KLLYILTLLKLEL-VQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKE 347 (605)
Q Consensus 269 k~~~l~~llk~~~-~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~ 347 (605)
++..++..++... .+.++||||++...+.+|..+|...|+++..+||++++.+|..++..|+.|.+.|||||+.++
T Consensus 431 q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~--- 507 (652)
T PRK05298 431 QVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLR--- 507 (652)
T ss_pred cHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHh---
Confidence 4445555554433 356899999999999999999999999999999999999999999999999999999999965
Q ss_pred ccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCC-----CCCchhHHHhhcccccCCCCccEEEEeCC
Q 007402 348 KDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEM-----PQNAAGYVHRIGRTGRAYNTGASVSLVSP 422 (605)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~-----P~s~~~yiqRiGRtgR~g~~G~ai~~v~~ 422 (605)
+|+|+|++++||++|. |.+..+|+||+|||||+ ..|.+++|+..
T Consensus 508 ------------------------------rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~ 556 (652)
T PRK05298 508 ------------------------------EGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADK 556 (652)
T ss_pred ------------------------------CCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecC
Confidence 8999999999999885 78999999999999996 78999999986
Q ss_pred chh
Q 007402 423 DEM 425 (605)
Q Consensus 423 ~e~ 425 (605)
.+.
T Consensus 557 ~~~ 559 (652)
T PRK05298 557 ITD 559 (652)
T ss_pred CCH
Confidence 444
No 112
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.84 E-value=3.1e-18 Score=190.65 Aligned_cols=322 Identities=20% Similarity=0.203 Sum_probs=222.6
Q ss_pred CCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHH
Q 007402 44 KGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALI 123 (605)
Q Consensus 44 ~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~ 123 (605)
+|. .|+++|-..--.+..|+ |+.+.||-|||+++.+|+.-..+. |..+-|++..-.||..=++++..++
T Consensus 75 lG~-r~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL~--------GkgVhVVTvNdYLA~RDae~mg~vy 143 (925)
T PRK12903 75 LGK-RPYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNALT--------GKGVIVSTVNEYLAERDAEEMGKVF 143 (925)
T ss_pred hCC-CcCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHhc--------CCceEEEecchhhhhhhHHHHHHHH
Confidence 476 79999988887777775 899999999999999999877666 5558888999999999999999999
Q ss_pred HHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchH-HHHHhcCCCC--CcccCCCceEEEEeCcchhccC----
Q 007402 124 ELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCM-PKCLSTGVLQ--SKSFSDSLKILVLDEADLLLSY---- 196 (605)
Q Consensus 124 ~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l-~~~l~~~~~~--~~~~l~~l~~lViDEad~i~~~---- 196 (605)
.++ +++|..+..+.+....+... .+||+++|..-+ .++|+.+... .......+.+.||||+|.++=.
T Consensus 144 ~fL----GLsvG~i~~~~~~~~rr~aY--~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArT 217 (925)
T PRK12903 144 NFL----GLSVGINKANMDPNLKREAY--ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKT 217 (925)
T ss_pred HHh----CCceeeeCCCCChHHHHHhc--cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCC
Confidence 998 78888888877776655544 689999999875 4566554321 1234577889999999976511
Q ss_pred -----C-------cHHHHHHHHhhCCC--------Cc-------------------------------------------
Q 007402 197 -----G-------YEDDLKALSAVIPR--------GC------------------------------------------- 213 (605)
Q Consensus 197 -----g-------~~~~l~~i~~~lp~--------~~------------------------------------------- 213 (605)
| ....+..+...+.. ..
T Consensus 218 PLIISg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf 297 (925)
T PRK12903 218 PLIISGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVM 297 (925)
T ss_pred cccccCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHH
Confidence 0 11222222222221 00
Q ss_pred -----------------------------------------------------------------eEEEEeeecChhHHH
Q 007402 214 -----------------------------------------------------------------QCLLMSATSSSDVDK 228 (605)
Q Consensus 214 -----------------------------------------------------------------q~il~SATl~~~v~~ 228 (605)
++.+||.|....-.+
T Consensus 298 ~rd~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~E 377 (925)
T PRK12903 298 KEDVEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQE 377 (925)
T ss_pred hcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHH
Confidence 223333333333333
Q ss_pred HHHHhcCCCeEEEcCCccCccccccCCCcEEEEEEccccchHHHHHHHHH-hhcCCCeEEEEecchhHHHHHHHHHHHcC
Q 007402 229 LKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLK-LELVQKKALIFTNTIDMAFRLKLFLEKFG 307 (605)
Q Consensus 229 l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~~~~~k~~~l~~llk-~~~~~~k~IIFv~s~~~~~~L~~~L~~~g 307 (605)
+.+.|--+- +.++. ..+....-..-.+......|+..+..-++ .+..+.|+||.|.|++.++.|...|.+.|
T Consensus 378 f~~iY~l~V--v~IPT-----nkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~g 450 (925)
T PRK12903 378 FIDIYNMRV--NVVPT-----NKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEAN 450 (925)
T ss_pred HHHHhCCCE--EECCC-----CCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCC
Confidence 333222111 11111 00000000011244456677776666444 44557799999999999999999999999
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHcC-CCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCcc
Q 007402 308 IKSAILNAELPQNSRLHILEEFNAG-LFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 386 (605)
Q Consensus 308 i~~~~l~~~l~~~~R~~i~~~F~~g-~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~ 386 (605)
++..+||+.-...+- .|+. +.| .-.|.|||+++. ||.||.--.
T Consensus 451 i~h~vLNAk~~e~EA-~IIa--~AG~~GaVTIATNMAG---------------------------------RGTDI~Lg~ 494 (925)
T PRK12903 451 IPHTVLNAKQNAREA-EIIA--KAGQKGAITIATNMAG---------------------------------RGTDIKLSK 494 (925)
T ss_pred CCceeecccchhhHH-HHHH--hCCCCCeEEEeccccc---------------------------------CCcCccCch
Confidence 999999997443322 2222 455 357999999987 999997433
Q ss_pred --------EEEEeCCCCCchhHHHhhcccccCCCCccEEEEeCCchh
Q 007402 387 --------TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM 425 (605)
Q Consensus 387 --------~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~~v~~~e~ 425 (605)
+||....|.|..---|-.||+||.|.+|.+-.|++-+|.
T Consensus 495 ~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLeD~ 541 (925)
T PRK12903 495 EVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDDQ 541 (925)
T ss_pred hHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEecchH
Confidence 899999999998889999999999999999999997765
No 113
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.84 E-value=4e-19 Score=201.12 Aligned_cols=309 Identities=21% Similarity=0.267 Sum_probs=212.1
Q ss_pred hHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHH-hcC
Q 007402 50 TLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIEL-CKG 128 (605)
Q Consensus 50 t~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~-~~~ 128 (605)
+.+..+.+..+.+..-+++.|+||||||.. +| +.++.... ..+..+.+.-|.|-=|..+++.+.+.... ++.
T Consensus 52 ~~~~~~i~~ai~~~~vvii~getGsGKTTq--lP--~~lle~g~---~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~ 124 (845)
T COG1643 52 TAVRDEILKAIEQNQVVIIVGETGSGKTTQ--LP--QFLLEEGL---GIAGKIGCTQPRRLAARSVAERVAEELGEKLGE 124 (845)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCChHHH--HH--HHHHhhhc---ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCc
Confidence 445555666666777899999999999984 44 22333221 22445667779886677777766554321 222
Q ss_pred CcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchh-ccCC-cHHHHHHHH
Q 007402 129 QVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLL-LSYG-YEDDLKALS 206 (605)
Q Consensus 129 ~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i-~~~g-~~~~l~~i~ 206 (605)
.+++++- +... ......|-+.|.+.|+..+... ..++.+++|||||||.= ++-. --..+..++
T Consensus 125 ~VGY~iR-fe~~---------~s~~Trik~mTdGiLlrei~~D-----~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~ 189 (845)
T COG1643 125 TVGYSIR-FESK---------VSPRTRIKVMTDGILLREIQND-----PLLSGYSVVIIDEAHERSLNTDILLGLLKDLL 189 (845)
T ss_pred eeeEEEE-eecc---------CCCCceeEEeccHHHHHHHhhC-----cccccCCEEEEcchhhhhHHHHHHHHHHHHHH
Confidence 1222211 1111 1234578899999999999876 56899999999999961 1111 123455666
Q ss_pred hhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEEEEEccccch--HHHHHHHHH--hhcC
Q 007402 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDK--LLYILTLLK--LELV 282 (605)
Q Consensus 207 ~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~~~~~k--~~~l~~llk--~~~~ 282 (605)
...+....+|.||||+..+ .+ ..++.+..++.++.. .-.+..+|......+. ...+...+. ....
T Consensus 190 ~~rr~DLKiIimSATld~~--rf-s~~f~~apvi~i~GR--------~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~ 258 (845)
T COG1643 190 ARRRDDLKLIIMSATLDAE--RF-SAYFGNAPVIEIEGR--------TYPVEIRYLPEAEADYILLDAIVAAVDIHLREG 258 (845)
T ss_pred hhcCCCceEEEEecccCHH--HH-HHHcCCCCEEEecCC--------ccceEEEecCCCCcchhHHHHHHHHHHHhccCC
Confidence 6777779999999999854 34 445565556655441 1245555633332222 222222222 2334
Q ss_pred CCeEEEEecchhHHHHHHHHHHH--c--CCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCcc
Q 007402 283 QKKALIFTNTIDMAFRLKLFLEK--F--GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVD 358 (605)
Q Consensus 283 ~~k~IIFv~s~~~~~~L~~~L~~--~--gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~ 358 (605)
.|-+|||.+......++...|+. + .+.++.|||.||..+...+++--..|.-.|++||++++
T Consensus 259 ~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAE-------------- 324 (845)
T COG1643 259 SGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAE-------------- 324 (845)
T ss_pred CCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccc--------------
Confidence 78999999999999999999987 3 47899999999999999988877777667999999998
Q ss_pred cccccCCCCCccccccccccccccCCccEEEEeCC------------------CCCchhHHHhhcccccCCCCccEEEEe
Q 007402 359 SRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEM------------------PQNAAGYVHRIGRTGRAYNTGASVSLV 420 (605)
Q Consensus 359 ~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~------------------P~s~~~yiqRiGRtgR~g~~G~ai~~v 420 (605)
.+|.+++|.+||.-++ |-|-.+..||.||+||- .+|.|+-++
T Consensus 325 -------------------TSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~-~pGicyRLy 384 (845)
T COG1643 325 -------------------TSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRT-GPGICYRLY 384 (845)
T ss_pred -------------------cceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccC-CCceEEEec
Confidence 5999999999997443 34567888999999998 589999999
Q ss_pred CCchh
Q 007402 421 SPDEM 425 (605)
Q Consensus 421 ~~~e~ 425 (605)
+.++.
T Consensus 385 se~~~ 389 (845)
T COG1643 385 SEEDF 389 (845)
T ss_pred CHHHH
Confidence 97554
No 114
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.83 E-value=6.5e-19 Score=169.10 Aligned_cols=189 Identities=34% Similarity=0.471 Sum_probs=151.6
Q ss_pred HCCCCCChHHHHHHHHHHhCC-CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q 007402 43 KKGIQKPTLIQQASIPLILEG-KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMA 121 (605)
Q Consensus 43 ~~g~~~pt~iQ~~aIp~~l~g-kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~ 121 (605)
..++..|+++|.++++.++.+ +.+++.++||+|||.+++.++++.+... ...++||++||..++.|+...+..
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~------~~~~~l~~~p~~~~~~~~~~~~~~ 76 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRG------KGKRVLVLVPTRELAEQWAEELKK 76 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhccc------CCCcEEEEeCCHHHHHHHHHHHHH
Confidence 457889999999999999999 9999999999999999999999877652 145799999999999999999888
Q ss_pred HHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCcHHH
Q 007402 122 LIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDD 201 (605)
Q Consensus 122 l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~~~ 201 (605)
+..... ......+.+...............+|+++|++.+.+.+.... .....++++||||||.+....+...
T Consensus 77 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~----~~~~~~~~iIiDE~h~~~~~~~~~~ 149 (201)
T smart00487 77 LGPSLG---LKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDL----LELSNVDLVILDEAHRLLDGGFGDQ 149 (201)
T ss_pred HhccCC---eEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCC----cCHhHCCEEEEECHHHHhcCCcHHH
Confidence 764331 133334444333443344443344999999999999888753 4567788999999999987678889
Q ss_pred HHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCC
Q 007402 202 LKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPE 244 (605)
Q Consensus 202 l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~ 244 (605)
+..++..++...+++++|||+++++......++.++..+....
T Consensus 150 ~~~~~~~~~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 150 LEKLLKLLPKNVQLLLLSATPPEEIENLLELFLNDPVFIDVGP 192 (201)
T ss_pred HHHHHHhCCccceEEEEecCCchhHHHHHHHhcCCCEEEeCCc
Confidence 9999998888899999999999999999988888777766543
No 115
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.82 E-value=5.4e-19 Score=199.29 Aligned_cols=319 Identities=19% Similarity=0.190 Sum_probs=214.6
Q ss_pred ChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHH-HHhc
Q 007402 49 PTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALI-ELCK 127 (605)
Q Consensus 49 pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~-~~~~ 127 (605)
.+..+...+..+.+..-+++.+.||+|||.-.---+++.....+ ...++++--|.|--|.-+++++..-- ..++
T Consensus 174 a~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~-----~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g 248 (924)
T KOG0920|consen 174 AYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG-----AACNIICTQPRRISAISVAERVAKERGESLG 248 (924)
T ss_pred cHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC-----CCCeEEecCCchHHHHHHHHHHHHHhccccC
Confidence 35677777788888889999999999999865444555555432 46668888899988888888765432 1122
Q ss_pred CCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcch--hccCCcHHHHHHH
Q 007402 128 GQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADL--LLSYGYEDDLKAL 205 (605)
Q Consensus 128 ~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~--i~~~g~~~~l~~i 205 (605)
..++..+-. .+ .......+++||.+.|+..+..+ ..+..+.++|+||+|. +-++...-.++.+
T Consensus 249 ~~VGYqvrl-~~---------~~s~~t~L~fcTtGvLLr~L~~~-----~~l~~vthiivDEVHER~i~~DflLi~lk~l 313 (924)
T KOG0920|consen 249 EEVGYQVRL-ES---------KRSRETRLLFCTTGVLLRRLQSD-----PTLSGVTHIIVDEVHERSINTDFLLILLKDL 313 (924)
T ss_pred CeeeEEEee-ec---------ccCCceeEEEecHHHHHHHhccC-----cccccCceeeeeeEEEccCCcccHHHHHHHH
Confidence 211111111 01 11223579999999999999874 6788899999999997 2233333344444
Q ss_pred HhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccc-----------cccCCCcEEEE-----------EE
Q 007402 206 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD-----------EVIPKNVQQFW-----------IS 263 (605)
Q Consensus 206 ~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~-----------~~~~~~l~q~~-----------~~ 263 (605)
+..- ++.++||||||++ .++...|+.++.++.++....... ........++. +.
T Consensus 314 L~~~-p~LkvILMSAT~d---ae~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (924)
T KOG0920|consen 314 LPRN-PDLKVILMSATLD---AELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLK 389 (924)
T ss_pred hhhC-CCceEEEeeeecc---hHHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccch
Confidence 4443 6899999999998 345556666666665543110000 00000011110 00
Q ss_pred c-cccchHHHHHHHHH---hhcCCCeEEEEecchhHHHHHHHHHHH---c----CCcEEEEcCCCCHHHHHHHHHHHHcC
Q 007402 264 C-SERDKLLYILTLLK---LELVQKKALIFTNTIDMAFRLKLFLEK---F----GIKSAILNAELPQNSRLHILEEFNAG 332 (605)
Q Consensus 264 ~-~~~~k~~~l~~llk---~~~~~~k~IIFv~s~~~~~~L~~~L~~---~----gi~~~~l~~~l~~~~R~~i~~~F~~g 332 (605)
+ ..+-...++..++. .....|.+|||.+..+.+..+...|+. + .+-+..+|+.|+..+...++...-.|
T Consensus 390 ~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g 469 (924)
T KOG0920|consen 390 LWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKG 469 (924)
T ss_pred hccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCC
Confidence 0 11123333333333 234478999999999999999999975 2 24456789999999999999999999
Q ss_pred CCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEE--------eCCCCC--------
Q 007402 333 LFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN--------FEMPQN-------- 396 (605)
Q Consensus 333 ~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~--------fd~P~s-------- 396 (605)
.-.|++||+.++ -.|.|++|.+||. ||.-.+
T Consensus 470 ~RKIIlaTNIAE---------------------------------TSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~w 516 (924)
T KOG0920|consen 470 TRKIILATNIAE---------------------------------TSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSW 516 (924)
T ss_pred cchhhhhhhhHh---------------------------------hcccccCeEEEEecCeeeeeeecccCCcchhheee
Confidence 999999999998 4999999999996 554333
Q ss_pred --chhHHHhhcccccCCCCccEEEEeCCchh
Q 007402 397 --AAGYVHRIGRTGRAYNTGASVSLVSPDEM 425 (605)
Q Consensus 397 --~~~yiqRiGRtgR~g~~G~ai~~v~~~e~ 425 (605)
-..-.||.||+||. .+|.|+.+++....
T Consensus 517 vSkAna~QR~GRAGRv-~~G~cy~L~~~~~~ 546 (924)
T KOG0920|consen 517 VSKANAKQRRGRAGRV-RPGICYHLYTRSRY 546 (924)
T ss_pred ccccchHHhcccccCc-cCCeeEEeechhhh
Confidence 34456999999998 79999999987543
No 116
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.82 E-value=1.9e-17 Score=185.46 Aligned_cols=274 Identities=18% Similarity=0.187 Sum_probs=179.8
Q ss_pred CCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHH
Q 007402 44 KGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALI 123 (605)
Q Consensus 44 ~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~ 123 (605)
+|. .|+++|--+.-.+.. .-|+.+.||.|||+++.+|+.-..+. |..+.|++++..||.+-++++..++
T Consensus 73 lG~-r~ydvQlig~l~L~~--G~IaEm~TGEGKTL~a~l~ayl~aL~--------G~~VhVvT~NdyLA~RD~e~m~pvy 141 (870)
T CHL00122 73 LGL-RHFDVQLIGGLVLND--GKIAEMKTGEGKTLVATLPAYLNALT--------GKGVHIVTVNDYLAKRDQEWMGQIY 141 (870)
T ss_pred hCC-CCCchHhhhhHhhcC--CccccccCCCCchHHHHHHHHHHHhc--------CCceEEEeCCHHHHHHHHHHHHHHH
Confidence 576 589999887655544 46999999999999999999766555 5569999999999999999999999
Q ss_pred HHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchH-HHHHhcCCCC--CcccCCCceEEEEeCcchhccCC---
Q 007402 124 ELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCM-PKCLSTGVLQ--SKSFSDSLKILVLDEADLLLSYG--- 197 (605)
Q Consensus 124 ~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l-~~~l~~~~~~--~~~~l~~l~~lViDEad~i~~~g--- 197 (605)
.++ +++|..+.++.+....+... .+||+++|..-+ .++|+.+... .......+.+.||||+|.++=..
T Consensus 142 ~~L----GLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArT 215 (870)
T CHL00122 142 RFL----GLTVGLIQEGMSSEERKKNY--LKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEART 215 (870)
T ss_pred HHc----CCceeeeCCCCChHHHHHhc--CCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCC
Confidence 998 68888888888876655554 579999999754 2444443211 12345678899999999765110
Q ss_pred -------------cHHHHHHHHhhCCCC----------------------------------------------------
Q 007402 198 -------------YEDDLKALSAVIPRG---------------------------------------------------- 212 (605)
Q Consensus 198 -------------~~~~l~~i~~~lp~~---------------------------------------------------- 212 (605)
....+..+...+...
T Consensus 216 PLiISg~~~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf 295 (870)
T CHL00122 216 PLIISGQSKTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELF 295 (870)
T ss_pred ceeccCCCccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHH
Confidence 111111222222110
Q ss_pred ----------------------------------------------------------------ceEEEEeeecChhHHH
Q 007402 213 ----------------------------------------------------------------CQCLLMSATSSSDVDK 228 (605)
Q Consensus 213 ----------------------------------------------------------------~q~il~SATl~~~v~~ 228 (605)
..+.+||.|....-.+
T Consensus 296 ~~d~dYiV~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~E 375 (870)
T CHL00122 296 FKNVHYIVRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELE 375 (870)
T ss_pred hcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHH
Confidence 1334455555544444
Q ss_pred HHHHhcCCCeEEEcCCccCccccccCCCcEEEEEEccccchHHHHHH-HHHhhcCCCeEEEEecchhHHHHHHHHHHHcC
Q 007402 229 LKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILT-LLKLELVQKKALIFTNTIDMAFRLKLFLEKFG 307 (605)
Q Consensus 229 l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~~~~~k~~~l~~-llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~g 307 (605)
+.+.|--+ ++.++. ..+....-..-.+..+..+|+..+.. +......+.|+||-|.|++.++.|+..|.+.|
T Consensus 376 f~~iY~l~--vv~IPt-----nkp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~g 448 (870)
T CHL00122 376 FEKIYNLE--VVCIPT-----HRPMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYR 448 (870)
T ss_pred HHHHhCCC--EEECCC-----CCCccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcC
Confidence 44444222 222222 11111111112345566677765544 44555667799999999999999999999999
Q ss_pred CcEEEEcCCC-C-HHHHHHHHHHHHcCC-CcEEEEcCCCC
Q 007402 308 IKSAILNAEL-P-QNSRLHILEEFNAGL-FDYLIATDDTQ 344 (605)
Q Consensus 308 i~~~~l~~~l-~-~~~R~~i~~~F~~g~-~~iLIaTd~~~ 344 (605)
++..+||+.- . ..+- .|+.+ .|. -.|.|||+++.
T Consensus 449 i~h~vLNAk~~~~~~EA-~IIA~--AG~~G~VTIATNMAG 485 (870)
T CHL00122 449 LPHQLLNAKPENVRRES-EIVAQ--AGRKGSITIATNMAG 485 (870)
T ss_pred CccceeeCCCccchhHH-HHHHh--cCCCCcEEEeccccC
Confidence 9999999973 2 2332 33333 343 36999999986
No 117
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.80 E-value=5.5e-18 Score=192.57 Aligned_cols=305 Identities=20% Similarity=0.180 Sum_probs=180.0
Q ss_pred ChHHHHHHHHHHhC----------CCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHH
Q 007402 49 PTLIQQASIPLILE----------GKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSE 118 (605)
Q Consensus 49 pt~iQ~~aIp~~l~----------gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~ 118 (605)
|.++|..||..+.+ .+..+++++||||||++.+..+. .++. ....+++|||||+.+|..|+.+.
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~-~l~~-----~~~~~~vl~lvdR~~L~~Q~~~~ 312 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAAR-KALE-----LLKNPKVFFVVDRRELDYQLMKE 312 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHH-HHHh-----hcCCCeEEEEECcHHHHHHHHHH
Confidence 78899999976542 24799999999999987655443 3333 13367899999999999999999
Q ss_pred HHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHc-CCCcEEEECCchHHHHHhcCCCCCcccCCCc-eEEEEeCcchhccC
Q 007402 119 VMALIELCKGQVQLKVVQLTSSMPASDLRAALA-GPPDIVIATPGCMPKCLSTGVLQSKSFSDSL-KILVLDEADLLLSY 196 (605)
Q Consensus 119 ~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~-~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l-~~lViDEad~i~~~ 196 (605)
+..+...+ . .+..+.......+. ....|+|+|.+.+...+.... .......- -+||+||||+...-
T Consensus 313 f~~~~~~~-----~-----~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~--~~~~~~~~~~lvIvDEaHrs~~~ 380 (667)
T TIGR00348 313 FQSLQKDC-----A-----ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEE--EKFPVDRKEVVVIFDEAHRSQYG 380 (667)
T ss_pred HHhhCCCC-----C-----cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhh--hccCCCCCCEEEEEEcCccccch
Confidence 88764211 0 11223344444443 347899999999876443211 00111111 28999999986433
Q ss_pred CcHHHHHHHHhhCCCCceEEEEeeecChhHHH-HHHHhc--CCCeEEEcCCccCccccccCCCcEEEEEE----c-----
Q 007402 197 GYEDDLKALSAVIPRGCQCLLMSATSSSDVDK-LKKLIL--HNPYILTLPEVGDVKDEVIPKNVQQFWIS----C----- 264 (605)
Q Consensus 197 g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~-l~~~~l--~~p~~i~l~~~~~~~~~~~~~~l~q~~~~----~----- 264 (605)
.+. ..+...+| +...++||||+-...+. -...+. ..+.+....-.....+... ..+..+... .
T Consensus 381 ~~~---~~l~~~~p-~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~-~~i~Y~~~~~~~~~~~~~l 455 (667)
T TIGR00348 381 ELA---KNLKKALK-NASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLT-VKIDYEDRLPEDHLDRKKL 455 (667)
T ss_pred HHH---HHHHhhCC-CCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCe-eeEEEEecchhhccChHHH
Confidence 222 23334565 46799999998532111 111111 0112221111000000000 000000000 0
Q ss_pred ---------------cccch-------------------HHH----H-HHHHHhh-cCCCeEEEEecchhHHHHHHHHHH
Q 007402 265 ---------------SERDK-------------------LLY----I-LTLLKLE-LVQKKALIFTNTIDMAFRLKLFLE 304 (605)
Q Consensus 265 ---------------~~~~k-------------------~~~----l-~~llk~~-~~~~k~IIFv~s~~~~~~L~~~L~ 304 (605)
.+..+ ... + ..+.+.. ...++++|||.++..|.+++..|.
T Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~ 535 (667)
T TIGR00348 456 DAFFDEIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALD 535 (667)
T ss_pred HHHHHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHH
Confidence 00000 000 0 0111111 124899999999999999999887
Q ss_pred Hc-----CCcEEEEcCCCCHH---------------------HHHHHHHHHHc-CCCcEEEEcCCCCcccccccCCCCCc
Q 007402 305 KF-----GIKSAILNAELPQN---------------------SRLHILEEFNA-GLFDYLIATDDTQTKEKDQSDEGGHV 357 (605)
Q Consensus 305 ~~-----gi~~~~l~~~l~~~---------------------~R~~i~~~F~~-g~~~iLIaTd~~~~~~~~~~~~~~~~ 357 (605)
+. +..+.++++..+.. ....++++|.. +.++|||++|++.
T Consensus 536 ~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmll------------- 602 (667)
T TIGR00348 536 EELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLL------------- 602 (667)
T ss_pred hhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccc-------------
Confidence 65 34455666554332 12368889976 6899999999976
Q ss_pred ccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccC
Q 007402 358 DSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRA 410 (605)
Q Consensus 358 ~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~ 410 (605)
.|+|.|.+.+++..-+..+ ..++|.+||+.|-
T Consensus 603 --------------------TGFDaP~l~tLyldKplk~-h~LlQai~R~nR~ 634 (667)
T TIGR00348 603 --------------------TGFDAPILNTLYLDKPLKY-HGLLQAIARTNRI 634 (667)
T ss_pred --------------------cccCCCccceEEEeccccc-cHHHHHHHHhccc
Confidence 6999999998877665554 5689999999993
No 118
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.80 E-value=1.3e-16 Score=178.56 Aligned_cols=132 Identities=22% Similarity=0.256 Sum_probs=106.5
Q ss_pred CCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHH
Q 007402 44 KGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALI 123 (605)
Q Consensus 44 ~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~ 123 (605)
+|. .|+++|-..--.+.+|+ |+.+.||-|||+++.+|++-..+. |..+.|++++..||..-++++..++
T Consensus 82 lG~-r~ydVQliGgl~Lh~G~--IAEM~TGEGKTL~atlpaylnAL~--------GkgVhVVTvNdYLA~RDae~m~~vy 150 (939)
T PRK12902 82 LGM-RHFDVQLIGGMVLHEGQ--IAEMKTGEGKTLVATLPSYLNALT--------GKGVHVVTVNDYLARRDAEWMGQVH 150 (939)
T ss_pred hCC-CcchhHHHhhhhhcCCc--eeeecCCCChhHHHHHHHHHHhhc--------CCCeEEEeCCHHHHHhHHHHHHHHH
Confidence 576 68999988776666665 999999999999999999987776 5569999999999999999999999
Q ss_pred HHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchH-----HHHHhcCCCCCcccCCCceEEEEeCcchhc
Q 007402 124 ELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCM-----PKCLSTGVLQSKSFSDSLKILVLDEADLLL 194 (605)
Q Consensus 124 ~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l-----~~~l~~~~~~~~~~l~~l~~lViDEad~i~ 194 (605)
.++ +++|..+.++++....+. ...+||+++|+..+ .+.+.... .......+.+.||||||.|+
T Consensus 151 ~~L----GLtvg~i~~~~~~~err~--aY~~DItYgTn~e~gFDYLRDnm~~~~--~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 151 RFL----GLSVGLIQQDMSPEERKK--NYACDITYATNSELGFDYLRDNMATDI--SEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred HHh----CCeEEEECCCCChHHHHH--hcCCCeEEecCCcccccchhhhhcccc--cccccCccceEEEeccccee
Confidence 998 788888888877665544 45789999999876 44443221 12455788999999999765
No 119
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.79 E-value=1.9e-17 Score=178.04 Aligned_cols=304 Identities=18% Similarity=0.205 Sum_probs=205.8
Q ss_pred HHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHH-HhcCCc
Q 007402 52 IQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIE-LCKGQV 130 (605)
Q Consensus 52 iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~-~~~~~~ 130 (605)
+-.+.+..+-..+-+|+.+.||||||. .+| |.+...+... ...+-+.-|.|--|.-++.+...-.. ..+..+
T Consensus 55 ~r~~il~~ve~nqvlIviGeTGsGKST--Qip--QyL~eaG~~~---~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~V 127 (674)
T KOG0922|consen 55 YRDQILYAVEDNQVLIVIGETGSGKST--QIP--QYLAEAGFAS---SGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEV 127 (674)
T ss_pred HHHHHHHHHHHCCEEEEEcCCCCCccc--cHh--HHHHhccccc---CCcEEeecCchHHHHHHHHHHHHHhCCCcCcee
Confidence 334555666667789999999999997 455 5565544321 22366677988777776666544322 122211
Q ss_pred --ceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcch--hccCCcHHHHHHHH
Q 007402 131 --QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADL--LLSYGYEDDLKALS 206 (605)
Q Consensus 131 --~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~--i~~~g~~~~l~~i~ 206 (605)
.+++...++ ....|.+.|-+.|+..+... ..++..++|||||||. +...-.-..++.++
T Consensus 128 GY~IRFed~ts------------~~TrikymTDG~LLRE~l~D-----p~LskYsvIIlDEAHERsl~TDiLlGlLKki~ 190 (674)
T KOG0922|consen 128 GYTIRFEDSTS------------KDTRIKYMTDGMLLREILKD-----PLLSKYSVIILDEAHERSLHTDILLGLLKKIL 190 (674)
T ss_pred eeEEEecccCC------------CceeEEEecchHHHHHHhcC-----CccccccEEEEechhhhhhHHHHHHHHHHHHH
Confidence 123322222 23579999999999988765 6788999999999996 11110112233333
Q ss_pred hhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEEEEEccccchHHH-HHH--HHHhhcCC
Q 007402 207 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLY-ILT--LLKLELVQ 283 (605)
Q Consensus 207 ~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~~~~~k~~~-l~~--llk~~~~~ 283 (605)
..- +...+|+||||+.. .....|+.+..++.++. ..-.+..+|...+..+=... +.. -+.+....
T Consensus 191 ~~R-~~LklIimSATlda---~kfS~yF~~a~i~~i~G--------R~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~ 258 (674)
T KOG0922|consen 191 KKR-PDLKLIIMSATLDA---EKFSEYFNNAPILTIPG--------RTFPVEILYLKEPTADYVDAALITVIQIHLTEPP 258 (674)
T ss_pred hcC-CCceEEEEeeeecH---HHHHHHhcCCceEeecC--------CCCceeEEeccCCchhhHHHHHHHHHHHHccCCC
Confidence 333 35789999999983 33555666655665544 11245666665444332221 122 22234567
Q ss_pred CeEEEEecchhHHHHHHHHHHHc----CC----cEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCcccccccCCCC
Q 007402 284 KKALIFTNTIDMAFRLKLFLEKF----GI----KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGG 355 (605)
Q Consensus 284 ~k~IIFv~s~~~~~~L~~~L~~~----gi----~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~ 355 (605)
|-+|||....++.+.+...|.+. +- -+..+||.||..+...+++.-..|.-.|++||++++
T Consensus 259 GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAE----------- 327 (674)
T KOG0922|consen 259 GDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAE----------- 327 (674)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceee-----------
Confidence 89999999999988888888764 11 236799999999999999988889999999999998
Q ss_pred CcccccccCCCCCccccccccccccccCCccEEEEeCC------------------CCCchhHHHhhcccccCCCCccEE
Q 007402 356 HVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEM------------------PQNAAGYVHRIGRTGRAYNTGASV 417 (605)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~------------------P~s~~~yiqRiGRtgR~g~~G~ai 417 (605)
..|.++++..||.-++ |-|-.+-.||.||+||. .+|.|+
T Consensus 328 ----------------------TSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt-~pGkcy 384 (674)
T KOG0922|consen 328 ----------------------TSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRT-GPGKCY 384 (674)
T ss_pred ----------------------eeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCC-CCceEE
Confidence 4889999999986443 45677889999999998 479999
Q ss_pred EEeCCchh
Q 007402 418 SLVSPDEM 425 (605)
Q Consensus 418 ~~v~~~e~ 425 (605)
-+++.++.
T Consensus 385 RLYte~~~ 392 (674)
T KOG0922|consen 385 RLYTESAY 392 (674)
T ss_pred EeeeHHHH
Confidence 99998643
No 120
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.79 E-value=2.6e-18 Score=188.47 Aligned_cols=305 Identities=17% Similarity=0.210 Sum_probs=194.4
Q ss_pred CCCChHHHHHHHHHHhC----C-CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHH
Q 007402 46 IQKPTLIQQASIPLILE----G-KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVM 120 (605)
Q Consensus 46 ~~~pt~iQ~~aIp~~l~----g-kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~ 120 (605)
-..|+.+|..||..+.+ | +.+|+++.||+|||..+ +.++.+|++. ....++|+|+-++.|+.|.+..+.
T Consensus 163 ~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTA-iaii~rL~r~-----~~~KRVLFLaDR~~Lv~QA~~af~ 236 (875)
T COG4096 163 AIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTA-IAIIDRLIKS-----GWVKRVLFLADRNALVDQAYGAFE 236 (875)
T ss_pred cccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeH-HHHHHHHHhc-----chhheeeEEechHHHHHHHHHHHH
Confidence 35689999999976654 4 45999999999999875 6677777774 346789999999999999999887
Q ss_pred HHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcC-CCCCcccCCCceEEEEeCcchhccCCcH
Q 007402 121 ALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTG-VLQSKSFSDSLKILVLDEADLLLSYGYE 199 (605)
Q Consensus 121 ~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~-~~~~~~~l~~l~~lViDEad~i~~~g~~ 199 (605)
.+...- -.+..+.+... ...++|.|+|...+...+... ..........+++|||||||+= ..
T Consensus 237 ~~~P~~-----~~~n~i~~~~~--------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRg----i~ 299 (875)
T COG4096 237 DFLPFG-----TKMNKIEDKKG--------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRG----IY 299 (875)
T ss_pred HhCCCc-----cceeeeecccC--------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhh----HH
Confidence 765421 11222222111 115799999999998887765 3333455667999999999983 34
Q ss_pred HHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhc-CCCe------------------EEEcCCccC---cc-------c
Q 007402 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLIL-HNPY------------------ILTLPEVGD---VK-------D 250 (605)
Q Consensus 200 ~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l-~~p~------------------~i~l~~~~~---~~-------~ 250 (605)
...+.|+.++..-.| +++||+.+.++.-.-.++ .+|+ ++.++-... .. .
T Consensus 300 ~~~~~I~dYFdA~~~--gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~sere 377 (875)
T COG4096 300 SEWSSILDYFDAATQ--GLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSERE 377 (875)
T ss_pred hhhHHHHHHHHHHHH--hhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhh
Confidence 445577776643333 239998775543222222 3222 222111000 00 0
Q ss_pred cccCCCc--EEEEEEccccchH-------HHHHHHHHhhcC-------CCeEEEEecchhHHHHHHHHHHHc-----CCc
Q 007402 251 EVIPKNV--QQFWISCSERDKL-------LYILTLLKLELV-------QKKALIFTNTIDMAFRLKLFLEKF-----GIK 309 (605)
Q Consensus 251 ~~~~~~l--~q~~~~~~~~~k~-------~~l~~llk~~~~-------~~k~IIFv~s~~~~~~L~~~L~~~-----gi~ 309 (605)
......+ ........+.++. ..+...+...+. -+||||||.+.++|+++...|... |--
T Consensus 378 k~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~ 457 (875)
T COG4096 378 KLQGEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRY 457 (875)
T ss_pred hhhccccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCce
Confidence 0000011 1111111111111 122222222221 469999999999999999988764 345
Q ss_pred EEEEcCCCCHHHHHHHHHHHHc--CCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccE
Q 007402 310 SAILNAELPQNSRLHILEEFNA--GLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 387 (605)
Q Consensus 310 ~~~l~~~l~~~~R~~i~~~F~~--g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~ 387 (605)
++++.++-.... ..++.|.. .--.|.|+.|++. .|||+|.|-+
T Consensus 458 a~~IT~d~~~~q--~~Id~f~~ke~~P~IaitvdlL~---------------------------------TGiDvpev~n 502 (875)
T COG4096 458 AMKITGDAEQAQ--ALIDNFIDKEKYPRIAITVDLLT---------------------------------TGVDVPEVVN 502 (875)
T ss_pred EEEEeccchhhH--HHHHHHHhcCCCCceEEehhhhh---------------------------------cCCCchheee
Confidence 677777765443 34555544 3356778888765 6999999999
Q ss_pred EEEeCCCCCchhHHHhhcccccC
Q 007402 388 VINFEMPQNAAGYVHRIGRTGRA 410 (605)
Q Consensus 388 VI~fd~P~s~~~yiqRiGRtgR~ 410 (605)
++.+-.-.|-.-|.|++||.-|.
T Consensus 503 lVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 503 LVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred eeehhhhhhHHHHHHHhcCcccc
Confidence 99999999999999999999883
No 121
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.76 E-value=6.2e-17 Score=172.28 Aligned_cols=305 Identities=20% Similarity=0.229 Sum_probs=213.6
Q ss_pred ChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHH-HHhc
Q 007402 49 PTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALI-ELCK 127 (605)
Q Consensus 49 pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~-~~~~ 127 (605)
.+++-.+.+..+-+.+-+||.|.||||||. .|| |.|...+-. ..+.++=+.-|.|--|..|+.++.+-. ..++
T Consensus 266 Vy~ykdell~av~e~QVLiI~GeTGSGKTT--QiP--QyL~EaGyt--k~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG 339 (902)
T KOG0923|consen 266 VYPYKDELLKAVKEHQVLIIVGETGSGKTT--QIP--QYLYEAGYT--KGGKKIGCTQPRRVAAMSVAARVAEEMGVKLG 339 (902)
T ss_pred chhhHHHHHHHHHhCcEEEEEcCCCCCccc--ccc--HHHHhcccc--cCCceEeecCcchHHHHHHHHHHHHHhCcccc
Confidence 355566677777777889999999999998 566 555554321 224445566699988888777665422 1222
Q ss_pred CCc--ceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhc-c-CCcHHHHH
Q 007402 128 GQV--QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLL-S-YGYEDDLK 203 (605)
Q Consensus 128 ~~~--~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~-~-~g~~~~l~ 203 (605)
..+ .|++-.+++. ..-|=+.|.++|+.-+... ..|.+.+++||||||.=. . .-....+.
T Consensus 340 ~eVGYsIRFEdcTSe------------kTvlKYMTDGmLlREfL~e-----pdLasYSViiiDEAHERTL~TDILfgLvK 402 (902)
T KOG0923|consen 340 HEVGYSIRFEDCTSE------------KTVLKYMTDGMLLREFLSE-----PDLASYSVIIVDEAHERTLHTDILFGLVK 402 (902)
T ss_pred cccceEEEeccccCc------------ceeeeeecchhHHHHHhcc-----ccccceeEEEeehhhhhhhhhhHHHHHHH
Confidence 211 3444433332 2345589999998876654 678899999999999621 1 00112233
Q ss_pred HHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEEEEEccccchHHHHHH-HHHhhc-
Q 007402 204 ALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILT-LLKLEL- 281 (605)
Q Consensus 204 ~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~~~~~k~~~l~~-llk~~~- 281 (605)
.|.. +.+....+++|||+..+ . ...|+.+..++.++. ..-.+..+|..+++.+-+...+. +++.+.
T Consensus 403 DIar-~RpdLKllIsSAT~DAe--k-FS~fFDdapIF~iPG--------RRyPVdi~Yt~~PEAdYldAai~tVlqIH~t 470 (902)
T KOG0923|consen 403 DIAR-FRPDLKLLISSATMDAE--K-FSAFFDDAPIFRIPG--------RRYPVDIFYTKAPEADYLDAAIVTVLQIHLT 470 (902)
T ss_pred HHHh-hCCcceEEeeccccCHH--H-HHHhccCCcEEeccC--------cccceeeecccCCchhHHHHHHhhheeeEec
Confidence 3333 34578999999999843 2 445666666666544 12357788888888776655444 343332
Q ss_pred -CCCeEEEEecchhHHHHHHHHHHHc----C-----CcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCccccccc
Q 007402 282 -VQKKALIFTNTIDMAFRLKLFLEKF----G-----IKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQS 351 (605)
Q Consensus 282 -~~~k~IIFv~s~~~~~~L~~~L~~~----g-----i~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~ 351 (605)
.-|-+|||....+..+.....|.+. | +-+|.+++.||......|++--..|--.|++||++++
T Consensus 471 qp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAE------- 543 (902)
T KOG0923|consen 471 QPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAE------- 543 (902)
T ss_pred cCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchh-------
Confidence 3478999999999888877777653 2 4578999999999999999999999999999999998
Q ss_pred CCCCCcccccccCCCCCccccccccccccccCCccEEEEeCC------------------CCCchhHHHhhcccccCCCC
Q 007402 352 DEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEM------------------PQNAAGYVHRIGRTGRAYNT 413 (605)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~------------------P~s~~~yiqRiGRtgR~g~~ 413 (605)
..|.|++|.+||.-++ |-|-.+-.||.||+||.| +
T Consensus 544 --------------------------TSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-P 596 (902)
T KOG0923|consen 544 --------------------------TSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-P 596 (902)
T ss_pred --------------------------hceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-C
Confidence 4899999999996443 445667789999999996 8
Q ss_pred ccEEEEeCC
Q 007402 414 GASVSLVSP 422 (605)
Q Consensus 414 G~ai~~v~~ 422 (605)
|.|+-+++.
T Consensus 597 GKCfRLYt~ 605 (902)
T KOG0923|consen 597 GKCFRLYTA 605 (902)
T ss_pred CceEEeech
Confidence 999999984
No 122
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.74 E-value=4.4e-16 Score=163.02 Aligned_cols=116 Identities=23% Similarity=0.373 Sum_probs=102.6
Q ss_pred HHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCcccccccCCC
Q 007402 275 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEG 354 (605)
Q Consensus 275 ~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~ 354 (605)
.+-+....+.++||-+=|+..|+.|..+|...|+++..+||+...-+|.+|+...+.|.++|||.-+.+-
T Consensus 438 EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLR---------- 507 (663)
T COG0556 438 EIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLR---------- 507 (663)
T ss_pred HHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhh----------
Confidence 3333334467999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCcccccccCCCCCccccccccccccccCCccEEEEeCC-----CCCchhHHHhhcccccCCCCccEEEEeCCch
Q 007402 355 GHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEM-----PQNAAGYVHRIGRTGRAYNTGASVSLVSPDE 424 (605)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~-----P~s~~~yiqRiGRtgR~g~~G~ai~~v~~~e 424 (605)
+|+|+|.|++|..+|. ..|..+.||-|||++|. -.|.+|.+...--
T Consensus 508 -----------------------EGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN-~~GkvIlYAD~iT 558 (663)
T COG0556 508 -----------------------EGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKIT 558 (663)
T ss_pred -----------------------ccCCCcceeEEEEeecCccccccccchHHHHHHHHhhc-cCCeEEEEchhhh
Confidence 5999999999998884 67999999999999997 4688888876533
No 123
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.74 E-value=4.9e-16 Score=168.05 Aligned_cols=315 Identities=21% Similarity=0.255 Sum_probs=208.8
Q ss_pred CCChHHHHHHHHHHh----CCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHH
Q 007402 47 QKPTLIQQASIPLIL----EGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMAL 122 (605)
Q Consensus 47 ~~pt~iQ~~aIp~~l----~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l 122 (605)
-.++++|.+.+.++. .|-+.|+....|-|||+- .|..+.++.... .....-||+||-..|.+ |..++.++
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQ-tIs~l~yl~~~~----~~~GPfLVi~P~StL~N-W~~Ef~rf 239 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQ-TISLLGYLKGRK----GIPGPFLVIAPKSTLDN-WMNEFKRF 239 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHHH-HHHHHHHHHHhc----CCCCCeEEEeeHhhHHH-HHHHHHHh
Confidence 468999999887765 467899999999999975 344444443321 11334899999877754 55555555
Q ss_pred HHHhcCCcceEEEEEeCCCCHHH--HHHHH-cCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCcH
Q 007402 123 IELCKGQVQLKVVQLTSSMPASD--LRAAL-AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE 199 (605)
Q Consensus 123 ~~~~~~~~~i~v~~l~~~~~~~~--~~~~l-~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~ 199 (605)
|+ +++++.+.|+..... .+..+ ....||+|+|.+.++.--. .+.--+++++||||||++-+. .
T Consensus 240 ---~P---~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~------~lk~~~W~ylvIDEaHRiKN~--~ 305 (971)
T KOG0385|consen 240 ---TP---SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKS------FLKKFNWRYLVIDEAHRIKNE--K 305 (971)
T ss_pred ---CC---CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHH------HHhcCCceEEEechhhhhcch--h
Confidence 43 699999999853321 22222 3578999999988765311 133346889999999998765 3
Q ss_pred HHHHHHHhhCCCCceEEEEeeec-ChhHHHHHHHh---------------------------------------------
Q 007402 200 DDLKALSAVIPRGCQCLLMSATS-SSDVDKLKKLI--------------------------------------------- 233 (605)
Q Consensus 200 ~~l~~i~~~lp~~~q~il~SATl-~~~v~~l~~~~--------------------------------------------- 233 (605)
..+..+++.+.. ...+|+|.|+ -+.+.+|..+.
T Consensus 306 s~L~~~lr~f~~-~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~ 384 (971)
T KOG0385|consen 306 SKLSKILREFKT-DNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRI 384 (971)
T ss_pred hHHHHHHHHhcc-cceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHH
Confidence 345555555543 3345566663 22222221110
Q ss_pred ------------------------------------------------------------cCCCeEEEcCCccCcccccc
Q 007402 234 ------------------------------------------------------------LHNPYILTLPEVGDVKDEVI 253 (605)
Q Consensus 234 ------------------------------------------------------------l~~p~~i~l~~~~~~~~~~~ 253 (605)
|.+|..+.--+ +...
T Consensus 385 K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~e-----Pg~p 459 (971)
T KOG0385|consen 385 KSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAE-----PGPP 459 (971)
T ss_pred HHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCC-----CCCC
Confidence 11111110000 0000
Q ss_pred CCCcEEEEEEccccchHHHHHHHHH-hhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcC
Q 007402 254 PKNVQQFWISCSERDKLLYILTLLK-LELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAG 332 (605)
Q Consensus 254 ~~~l~q~~~~~~~~~k~~~l~~llk-~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g 332 (605)
.....| .+....|+.+|-.+|. +...+.++|||......-.-|..++.-.++..|-+.|.++..+|...++.||..
T Consensus 460 yttdeh---Lv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~ 536 (971)
T KOG0385|consen 460 YTTDEH---LVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAP 536 (971)
T ss_pred CCcchH---HHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCC
Confidence 000001 1112335555544443 334467999999999999999999999999999999999999999999999985
Q ss_pred C---CcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhccccc
Q 007402 333 L---FDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGR 409 (605)
Q Consensus 333 ~---~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR 409 (605)
. +-.|++|.... + ||++..+++||.||--|+|..-.|..-||.|
T Consensus 537 ~s~~FiFlLSTRAGG-------------------------------L--GINL~aADtVIlyDSDWNPQ~DLQAmDRaHR 583 (971)
T KOG0385|consen 537 PSEKFIFLLSTRAGG-------------------------------L--GINLTAADTVILYDSDWNPQVDLQAMDRAHR 583 (971)
T ss_pred CcceEEEEEeccccc-------------------------------c--ccccccccEEEEecCCCCchhhhHHHHHHHh
Confidence 4 45677886654 3 9999999999999999999999999999999
Q ss_pred CCCCccEEE--EeCCc
Q 007402 410 AYNTGASVS--LVSPD 423 (605)
Q Consensus 410 ~g~~G~ai~--~v~~~ 423 (605)
.|+...+.+ |++..
T Consensus 584 IGQ~K~V~V~RLiten 599 (971)
T KOG0385|consen 584 IGQKKPVVVYRLITEN 599 (971)
T ss_pred hCCcCceEEEEEeccc
Confidence 999766554 45543
No 124
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.73 E-value=9.7e-16 Score=177.29 Aligned_cols=74 Identities=34% Similarity=0.456 Sum_probs=58.3
Q ss_pred HCCCCCChHHHHH---HHHHHh-CCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHH-H
Q 007402 43 KKGIQKPTLIQQA---SIPLIL-EGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVY-S 117 (605)
Q Consensus 43 ~~g~~~pt~iQ~~---aIp~~l-~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~-~ 117 (605)
-.|| ++++-|.+ +|..++ +++.+++.|+||+|||+||++|+++.. .+.++||++||++|++|+. +
T Consensus 241 ~~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~---------~~~~vvI~t~T~~Lq~Ql~~~ 310 (820)
T PRK07246 241 LLGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS---------DQRQIIVSVPTKILQDQIMAE 310 (820)
T ss_pred cCCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc---------CCCcEEEEeCcHHHHHHHHHH
Confidence 3466 58999998 444433 457899999999999999999988742 2567999999999999994 6
Q ss_pred HHHHHHHHh
Q 007402 118 EVMALIELC 126 (605)
Q Consensus 118 ~~~~l~~~~ 126 (605)
.+..+...+
T Consensus 311 ~i~~l~~~~ 319 (820)
T PRK07246 311 EVKAIQEVF 319 (820)
T ss_pred HHHHHHHhc
Confidence 677666654
No 125
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.72 E-value=9.8e-17 Score=144.34 Aligned_cols=129 Identities=39% Similarity=0.592 Sum_probs=113.5
Q ss_pred cEEEEEEccccchHHHHHHHHHhhc-CCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCc
Q 007402 257 VQQFWISCSERDKLLYILTLLKLEL-VQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFD 335 (605)
Q Consensus 257 l~q~~~~~~~~~k~~~l~~llk~~~-~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~ 335 (605)
+.+++...++ .|...+..++.... ..+++||||++.+.++.++..|...+..+..+|++++...|..+++.|++|...
T Consensus 2 i~~~~~~~~~-~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 80 (131)
T cd00079 2 IKQYVLPVED-EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIV 80 (131)
T ss_pred cEEEEEECCH-HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCc
Confidence 3455554443 67777777777543 467999999999999999999999899999999999999999999999999999
Q ss_pred EEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCcc
Q 007402 336 YLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGA 415 (605)
Q Consensus 336 iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ 415 (605)
+||+|...+ +|+|++++++||.+++|++...|+|++||++|.|+.|.
T Consensus 81 ili~t~~~~---------------------------------~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~ 127 (131)
T cd00079 81 VLVATDVIA---------------------------------RGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGT 127 (131)
T ss_pred EEEEcChhh---------------------------------cCcChhhCCEEEEeCCCCCHHHheecccccccCCCCce
Confidence 999999865 79999999999999999999999999999999999887
Q ss_pred EEEE
Q 007402 416 SVSL 419 (605)
Q Consensus 416 ai~~ 419 (605)
++.|
T Consensus 128 ~~~~ 131 (131)
T cd00079 128 AILL 131 (131)
T ss_pred EEeC
Confidence 7653
No 126
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.71 E-value=5.2e-15 Score=161.01 Aligned_cols=322 Identities=20% Similarity=0.248 Sum_probs=207.2
Q ss_pred CCChHHHHHHHHHHhC----CCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHH
Q 007402 47 QKPTLIQQASIPLILE----GKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMAL 122 (605)
Q Consensus 47 ~~pt~iQ~~aIp~~l~----gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l 122 (605)
..+.++|++.+.++.+ +..-|+-...|-|||.- ++..|..+.... .--..+||+||. .+..||..++..+
T Consensus 204 ~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQ-iisFLaaL~~S~----k~~~paLIVCP~-Tii~qW~~E~~~w 277 (923)
T KOG0387|consen 204 SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQ-IISFLAALHHSG----KLTKPALIVCPA-TIIHQWMKEFQTW 277 (923)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchh-HHHHHHHHhhcc----cccCceEEEccH-HHHHHHHHHHHHh
Confidence 3458999999988764 56789999999999974 333444444421 112459999995 6778888888877
Q ss_pred HHHhcCCcceEEEEEeCCCCH---------HHHHH----HHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeC
Q 007402 123 IELCKGQVQLKVVQLTSSMPA---------SDLRA----ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDE 189 (605)
Q Consensus 123 ~~~~~~~~~i~v~~l~~~~~~---------~~~~~----~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDE 189 (605)
.. ..+|..+++..+. ..... .......|+|+|.+.+.-+ + ..+.-..++++|+||
T Consensus 278 ~p------~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~---~---d~l~~~~W~y~ILDE 345 (923)
T KOG0387|consen 278 WP------PFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ---G---DDLLGILWDYVILDE 345 (923)
T ss_pred Cc------ceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc---C---cccccccccEEEecC
Confidence 64 5778888876552 11111 1123457999997655321 1 123345688999999
Q ss_pred cchhccCCcHHHHHHHHhhCCCCceEEEEeeec-ChhHHHHHHHhc-----------------CCCeEE-----------
Q 007402 190 ADLLLSYGYEDDLKALSAVIPRGCQCLLMSATS-SSDVDKLKKLIL-----------------HNPYIL----------- 240 (605)
Q Consensus 190 ad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl-~~~v~~l~~~~l-----------------~~p~~i----------- 240 (605)
.|.|-+.. ..+...+..++. .+.|.+|.|+ -+.+.+|..+|- ..|+.+
T Consensus 346 GH~IrNpn--s~islackki~T-~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv 422 (923)
T KOG0387|consen 346 GHRIRNPN--SKISLACKKIRT-VHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQV 422 (923)
T ss_pred cccccCCc--cHHHHHHHhccc-cceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHH
Confidence 99987663 344444555543 4455566663 333333332220 000000
Q ss_pred -----------------------------EcCCccCc-----------------------------c-----------cc
Q 007402 241 -----------------------------TLPEVGDV-----------------------------K-----------DE 251 (605)
Q Consensus 241 -----------------------------~l~~~~~~-----------------------------~-----------~~ 251 (605)
.+....+. . ..
T Consensus 423 ~~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkI 502 (923)
T KOG0387|consen 423 QTAYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKI 502 (923)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhh
Confidence 00000000 0 00
Q ss_pred cc-CCCcE-------E---EEEEccccchHHHHHHHHHhhcC-CCeEEEEecchhHHHHHHHHHH-HcCCcEEEEcCCCC
Q 007402 252 VI-PKNVQ-------Q---FWISCSERDKLLYILTLLKLELV-QKKALIFTNTIDMAFRLKLFLE-KFGIKSAILNAELP 318 (605)
Q Consensus 252 ~~-~~~l~-------q---~~~~~~~~~k~~~l~~llk~~~~-~~k~IIFv~s~~~~~~L~~~L~-~~gi~~~~l~~~l~ 318 (605)
.. +..+. + +--.....-|...+..+++.... +.++|+|..++....-|..||. ..|+.++-+.|..|
T Consensus 503 CnHPdll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~ 582 (923)
T KOG0387|consen 503 CNHPDLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTP 582 (923)
T ss_pred cCCcccccCcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCc
Confidence 00 00000 0 00111123456667777766544 3499999999999999999999 68999999999999
Q ss_pred HHHHHHHHHHHHcCC-Cc-EEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCC
Q 007402 319 QNSRLHILEEFNAGL-FD-YLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQN 396 (605)
Q Consensus 319 ~~~R~~i~~~F~~g~-~~-iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s 396 (605)
...|..++++||.++ +. .|++|.+.. + |+++..++-||.||+-|+
T Consensus 583 ~~~R~~lVd~Fne~~s~~VFLLTTrvGG-------------------------------L--GlNLTgAnRVIIfDPdWN 629 (923)
T KOG0387|consen 583 AALRQKLVDRFNEDESIFVFLLTTRVGG-------------------------------L--GLNLTGANRVIIFDPDWN 629 (923)
T ss_pred cchhhHHHHhhcCCCceEEEEEEecccc-------------------------------c--ccccccCceEEEECCCCC
Confidence 999999999999876 34 466666644 3 999999999999999999
Q ss_pred chhHHHhhcccccCCCCccEE--EEeCC
Q 007402 397 AAGYVHRIGRTGRAYNTGASV--SLVSP 422 (605)
Q Consensus 397 ~~~yiqRiGRtgR~g~~G~ai--~~v~~ 422 (605)
|++-.|..-|+-|.|++-.++ -|++.
T Consensus 630 PStD~QAreRawRiGQkkdV~VYRL~t~ 657 (923)
T KOG0387|consen 630 PSTDNQARERAWRIGQKKDVVVYRLMTA 657 (923)
T ss_pred CccchHHHHHHHhhcCccceEEEEEecC
Confidence 999999999999999965443 34444
No 127
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.70 E-value=1.1e-16 Score=167.49 Aligned_cols=336 Identities=14% Similarity=0.081 Sum_probs=235.6
Q ss_pred HHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHH
Q 007402 40 ALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEV 119 (605)
Q Consensus 40 al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~ 119 (605)
.+..+--+....+|.++|..+-+|+++++.-.|.+||.++|.+..+..++. .+....+++.|+.++++...+.+
T Consensus 278 ~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~------~~~s~~~~~~~~~~~~~~~~~~~ 351 (1034)
T KOG4150|consen 278 LLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTL------CHATNSLLPSEMVEHLRNGSKGQ 351 (1034)
T ss_pred HHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhc------CcccceecchhHHHHhhccCCce
Confidence 344555567788999999999999999999999999999999888876655 23455899999999987655432
Q ss_pred HHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccC-C-
Q 007402 120 MALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSY-G- 197 (605)
Q Consensus 120 ~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~-g- 197 (605)
.-........ .--++..+.+.+....+.....+..++++.|+.+...+-.+.+.....+-.+.+++.||+|..+.. +
T Consensus 352 ~V~~~~I~~~-K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~ 430 (1034)
T KOG4150|consen 352 VVHVEVIKAR-KSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKA 430 (1034)
T ss_pred EEEEEehhhh-hcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhh
Confidence 2111100000 112333344444445556666788999999998876655444333345556778999999986643 1
Q ss_pred -cHHHHHHHHhhCC-----CCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEEEEEcc------
Q 007402 198 -YEDDLKALSAVIP-----RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS------ 265 (605)
Q Consensus 198 -~~~~l~~i~~~lp-----~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~~------ 265 (605)
....|..++..+. .+.|++-.|||+.+.+.....++--+.+.+...+ ..+..-.++++.-+
T Consensus 431 ~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~D-------GSPs~~K~~V~WNP~~~P~~ 503 (1034)
T KOG4150|consen 431 LAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTID-------GSPSSEKLFVLWNPSAPPTS 503 (1034)
T ss_pred HHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEec-------CCCCccceEEEeCCCCCCcc
Confidence 2345555555442 4789999999999999888888766655554333 22334445554432
Q ss_pred ccc---hHHHHHHHHH-hhcCCCeEEEEecchhHHHHHHHHHHHc----CC----cEEEEcCCCCHHHHHHHHHHHHcCC
Q 007402 266 ERD---KLLYILTLLK-LELVQKKALIFTNTIDMAFRLKLFLEKF----GI----KSAILNAELPQNSRLHILEEFNAGL 333 (605)
Q Consensus 266 ~~~---k~~~l~~llk-~~~~~~k~IIFv~s~~~~~~L~~~L~~~----gi----~~~~l~~~l~~~~R~~i~~~F~~g~ 333 (605)
+.+ +......++- +-...-+||-||.++..|+.+-...+.. |- .+..+.|+-...+|..|..+.=-|.
T Consensus 504 ~~~~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~ 583 (1034)
T KOG4150|consen 504 KSEKSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGK 583 (1034)
T ss_pred hhhhhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCe
Confidence 112 2222222221 2223558999999999998775544432 21 2345788999999999999999999
Q ss_pred CcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCC
Q 007402 334 FDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNT 413 (605)
Q Consensus 334 ~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~ 413 (605)
..-+|||+.++. |||+..++.|++.++|.|...+.|..||+||.+++
T Consensus 584 L~giIaTNALEL---------------------------------GIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~ 630 (1034)
T KOG4150|consen 584 LCGIIATNALEL---------------------------------GIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKP 630 (1034)
T ss_pred eeEEEecchhhh---------------------------------ccccccceeEEEccCchhHHHHHHHhccccccCCC
Confidence 999999999883 99999999999999999999999999999999999
Q ss_pred ccEEEEeCC
Q 007402 414 GASVSLVSP 422 (605)
Q Consensus 414 G~ai~~v~~ 422 (605)
..++.++..
T Consensus 631 SLavyva~~ 639 (1034)
T KOG4150|consen 631 SLAVYVAFL 639 (1034)
T ss_pred ceEEEEEec
Confidence 888776653
No 128
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.69 E-value=6.8e-15 Score=166.33 Aligned_cols=129 Identities=25% Similarity=0.278 Sum_probs=103.5
Q ss_pred EEccccchHHHHHH-HHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEc
Q 007402 262 ISCSERDKLLYILT-LLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIAT 340 (605)
Q Consensus 262 ~~~~~~~k~~~l~~-llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaT 340 (605)
+.....+|+..+.. +...+..+.|+||-+.|++.++.|+.+|...||+.-+||+.....+-.-|.+.=+.| .|.|||
T Consensus 606 vy~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~~G--aVTIAT 683 (1112)
T PRK12901 606 VYKTKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQPG--TVTIAT 683 (1112)
T ss_pred EecCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCCCC--cEEEec
Confidence 33455667765554 444555677999999999999999999999999999999986655544444443444 689999
Q ss_pred CCCCcccccccCCCCCcccccccCCCCCccccccccccccccC--------CccEEEEeCCCCCchhHHHhhcccccCCC
Q 007402 341 DDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK--------NVHTVINFEMPQNAAGYVHRIGRTGRAYN 412 (605)
Q Consensus 341 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~--------~v~~VI~fd~P~s~~~yiqRiGRtgR~g~ 412 (605)
+++. ||-||. +==+||--..|.|..---|-.||+||.|.
T Consensus 684 NMAG---------------------------------RGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGD 730 (1112)
T PRK12901 684 NMAG---------------------------------RGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGD 730 (1112)
T ss_pred cCcC---------------------------------CCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCC
Confidence 9987 999997 33478999999999999999999999999
Q ss_pred CccEEEEeCCchh
Q 007402 413 TGASVSLVSPDEM 425 (605)
Q Consensus 413 ~G~ai~~v~~~e~ 425 (605)
+|.+-.|++-+|.
T Consensus 731 PGsS~f~lSLEDd 743 (1112)
T PRK12901 731 PGSSQFYVSLEDN 743 (1112)
T ss_pred CCcceEEEEcccH
Confidence 9999999997765
No 129
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.69 E-value=6.2e-17 Score=167.38 Aligned_cols=314 Identities=18% Similarity=0.209 Sum_probs=205.0
Q ss_pred CCChHHHHHHHHHHhCC---CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHH
Q 007402 47 QKPTLIQQASIPLILEG---KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALI 123 (605)
Q Consensus 47 ~~pt~iQ~~aIp~~l~g---kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~ 123 (605)
..++|+|++++..+..+ +.-|+..|+|+|||++-+-.+.. -..++||||.+---+.||..++..+.
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~t-----------ikK~clvLcts~VSVeQWkqQfk~ws 369 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACT-----------IKKSCLVLCTSAVSVEQWKQQFKQWS 369 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeee-----------ecccEEEEecCccCHHHHHHHHHhhc
Confidence 45689999999988743 67899999999999865443332 14469999999999999999998886
Q ss_pred HHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCC----CcccCCCceEEEEeCcchhccCCcH
Q 007402 124 ELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQ----SKSFSDSLKILVLDEADLLLSYGYE 199 (605)
Q Consensus 124 ~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~----~~~~l~~l~~lViDEad~i~~~g~~ 199 (605)
..- +-.+..++++. +.....++.|+|+|..++..--++..-. .-+.-..+.++|+||+|.+...-|+
T Consensus 370 ti~----d~~i~rFTsd~-----Ke~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFR 440 (776)
T KOG1123|consen 370 TIQ----DDQICRFTSDA-----KERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFR 440 (776)
T ss_pred ccC----ccceEEeeccc-----cccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHH
Confidence 543 22344555443 2334567899999998765422221100 0011245889999999999888788
Q ss_pred HHHHHHHhhCCCCceEEEEeeecChhHHHHHHH-hcCCCeEEEcCC--------------cc-------CccccccCC-C
Q 007402 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKL-ILHNPYILTLPE--------------VG-------DVKDEVIPK-N 256 (605)
Q Consensus 200 ~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~-~l~~p~~i~l~~--------------~~-------~~~~~~~~~-~ 256 (605)
..+.-+..++. ++++||+-.+-+.+..+ |+-.|.....+- .+ ....+.... .
T Consensus 441 RVlsiv~aHcK-----LGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t 515 (776)
T KOG1123|consen 441 RVLSIVQAHCK-----LGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENT 515 (776)
T ss_pred HHHHHHHHHhh-----ccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhh
Confidence 88887777764 78999986554444332 222232221110 00 000000000 0
Q ss_pred cEEEEEEccccchHHHHHHHHHhhcC-CCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcC-CC
Q 007402 257 VQQFWISCSERDKLLYILTLLKLELV-QKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAG-LF 334 (605)
Q Consensus 257 l~q~~~~~~~~~k~~~l~~llk~~~~-~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g-~~ 334 (605)
-....+.+-...||..+--+++.+.. +.|+|||..++-....++..| |. -.+.|..++++|..|++.|+-+ .+
T Consensus 516 ~kr~lLyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl---~K--pfIYG~Tsq~ERm~ILqnFq~n~~v 590 (776)
T KOG1123|consen 516 RKRMLLYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKL---GK--PFIYGPTSQNERMKILQNFQTNPKV 590 (776)
T ss_pred hhhheeeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHc---CC--ceEECCCchhHHHHHHHhcccCCcc
Confidence 11112223344566666666665543 559999998876555555444 33 3578999999999999999864 67
Q ss_pred cEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCC-CCchhHHHhhcccccCCC-
Q 007402 335 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP-QNAAGYVHRIGRTGRAYN- 412 (605)
Q Consensus 335 ~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P-~s~~~yiqRiGRtgR~g~- 412 (605)
+.+..+.+.. ..||+|..+|+|+...- .|-..--||.||.-|+-+
T Consensus 591 NTIFlSKVgD---------------------------------tSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~ 637 (776)
T KOG1123|consen 591 NTIFLSKVGD---------------------------------TSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKR 637 (776)
T ss_pred ceEEEeeccC---------------------------------ccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhc
Confidence 8888887766 48999999999987764 366778899999888643
Q ss_pred --Cc---cEEEEeCCc
Q 007402 413 --TG---ASVSLVSPD 423 (605)
Q Consensus 413 --~G---~ai~~v~~~ 423 (605)
.+ ..+++|+.+
T Consensus 638 ~de~fnafFYSLVS~D 653 (776)
T KOG1123|consen 638 NDEEFNAFFYSLVSKD 653 (776)
T ss_pred Cccccceeeeeeeecc
Confidence 33 345666654
No 130
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.67 E-value=1.4e-16 Score=130.66 Aligned_cols=78 Identities=44% Similarity=0.682 Sum_probs=74.9
Q ss_pred HHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCcccccccccccc
Q 007402 301 LFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 380 (605)
Q Consensus 301 ~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGi 380 (605)
++|+..|++++.+||+++...|..+++.|+.|...|||||+.++ +||
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~---------------------------------~Gi 47 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILG---------------------------------EGI 47 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGT---------------------------------TSS
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeecccc---------------------------------ccc
Confidence 47899999999999999999999999999999999999999866 799
Q ss_pred ccCCccEEEEeCCCCCchhHHHhhcccccCC
Q 007402 381 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAY 411 (605)
Q Consensus 381 D~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g 411 (605)
|+|++++||++++|+|+..|+|++||++|.|
T Consensus 48 d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 48 DLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp TSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred cccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 9999999999999999999999999999986
No 131
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.67 E-value=3.2e-15 Score=165.01 Aligned_cols=167 Identities=22% Similarity=0.296 Sum_probs=121.4
Q ss_pred CCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHH
Q 007402 45 GIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIE 124 (605)
Q Consensus 45 g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~ 124 (605)
+| .|-.+|.+.....=.++.+++.|||.+|||.+- .-+++..+.. .....+|+++||+.|+.|+...+.....
T Consensus 509 dF-~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfis-fY~iEKVLRe-----sD~~VVIyvaPtKaLVnQvsa~VyaRF~ 581 (1330)
T KOG0949|consen 509 DF-CPDEWQRELLDSVDRNESAVIVAPTSAGKTFIS-FYAIEKVLRE-----SDSDVVIYVAPTKALVNQVSANVYARFD 581 (1330)
T ss_pred cc-CCcHHHHHHhhhhhcccceEEEeeccCCceecc-HHHHHHHHhh-----cCCCEEEEecchHHHhhhhhHHHHHhhc
Confidence 44 477899999999999999999999999999863 3355667764 3356689999999999999887765442
Q ss_pred HhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCcHHHHHH
Q 007402 125 LCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204 (605)
Q Consensus 125 ~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~~~l~~ 204 (605)
... -.+...+.|....+.+.. .-.++|+|+-|+++-.+|..... ...+...++++|+||+|++.++.-.-.++.
T Consensus 582 ~~t---~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~-~q~~cerIRyiIfDEVH~iG~~ed~l~~Eq 655 (1330)
T KOG0949|consen 582 TKT---FLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPH-HQKFCERIRYIIFDEVHLIGNEEDGLLWEQ 655 (1330)
T ss_pred cCc---cccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchh-hhhhhhcceEEEechhhhccccccchHHHH
Confidence 111 233334445443332222 22689999999999888876311 126678999999999999987754555666
Q ss_pred HHhhCCCCceEEEEeeecChhH
Q 007402 205 LSAVIPRGCQCLLMSATSSSDV 226 (605)
Q Consensus 205 i~~~lp~~~q~il~SATl~~~v 226 (605)
++.++| |.++.+|||+.+..
T Consensus 656 ll~li~--CP~L~LSATigN~~ 675 (1330)
T KOG0949|consen 656 LLLLIP--CPFLVLSATIGNPN 675 (1330)
T ss_pred HHHhcC--CCeeEEecccCCHH
Confidence 666664 88999999987653
No 132
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.67 E-value=8.7e-16 Score=161.17 Aligned_cols=306 Identities=23% Similarity=0.252 Sum_probs=193.3
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCC
Q 007402 62 EGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSM 141 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~ 141 (605)
..+-++-++||.||||.- +++++.. ..++++--|.|-||..|++.++.. ++.|..++|..
T Consensus 190 ~RkIi~H~GPTNSGKTy~----ALqrl~~--------aksGvycGPLrLLA~EV~~r~na~--------gipCdL~TGeE 249 (700)
T KOG0953|consen 190 RRKIIMHVGPTNSGKTYR----ALQRLKS--------AKSGVYCGPLRLLAHEVYDRLNAL--------GIPCDLLTGEE 249 (700)
T ss_pred hheEEEEeCCCCCchhHH----HHHHHhh--------hccceecchHHHHHHHHHHHhhhc--------CCCccccccce
Confidence 345578899999999964 5677665 344899999999999999999887 67777777764
Q ss_pred CHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCcHH-HHHHHHhhCCCCceEEEEee
Q 007402 142 PASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYED-DLKALSAVIPRGCQCLLMSA 220 (605)
Q Consensus 142 ~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~~-~l~~i~~~lp~~~q~il~SA 220 (605)
..-.... ...+..+-||-+++ ..-..+++.||||.+.|.+....- .-+.++.........
T Consensus 250 ~~~~~~~--~~~a~hvScTVEM~------------sv~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHL----- 310 (700)
T KOG0953|consen 250 RRFVLDN--GNPAQHVSCTVEMV------------SVNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHL----- 310 (700)
T ss_pred eeecCCC--CCcccceEEEEEEe------------ecCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhc-----
Confidence 3211111 12356777775443 122457899999999987653221 223333333222222
Q ss_pred ecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEE-EEEEccccchHHHHHHHHHhhcCCCeEEEEecchhHHHHH
Q 007402 221 TSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ-FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRL 299 (605)
Q Consensus 221 Tl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q-~~~~~~~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L 299 (605)
|.+|.++.+-..- -..+.+.+.. .|-....-.-..-+..-++ ++..|-||| |-|+...+.+
T Consensus 311 -------------CGepsvldlV~~i---~k~TGd~vev~~YeRl~pL~v~~~~~~sl~-nlk~GDCvV-~FSkk~I~~~ 372 (700)
T KOG0953|consen 311 -------------CGEPSVLDLVRKI---LKMTGDDVEVREYERLSPLVVEETALGSLS-NLKPGDCVV-AFSKKDIFTV 372 (700)
T ss_pred -------------cCCchHHHHHHHH---HhhcCCeeEEEeecccCcceehhhhhhhhc-cCCCCCeEE-EeehhhHHHH
Confidence 2222222211100 0001111111 1111111000011111111 234666766 4466788999
Q ss_pred HHHHHHcCCc-EEEEcCCCCHHHHHHHHHHHHc--CCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCcccccccc
Q 007402 300 KLFLEKFGIK-SAILNAELPQNSRLHILEEFNA--GLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGV 376 (605)
Q Consensus 300 ~~~L~~~gi~-~~~l~~~l~~~~R~~i~~~F~~--g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv 376 (605)
+..+++.|.. ++++.|.||+..|..-...||. ++++||||||...
T Consensus 373 k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIG-------------------------------- 420 (700)
T KOG0953|consen 373 KKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIG-------------------------------- 420 (700)
T ss_pred HHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeecccc--------------------------------
Confidence 9999999876 9999999999999999999998 9999999999854
Q ss_pred ccccccCCccEEEEeCCC---------CCchhHHHhhcccccCCC---CccEEEEeCCchhhHHHHHHHHHhhhhhhc-c
Q 007402 377 VRGIDFKNVHTVINFEMP---------QNAAGYVHRIGRTGRAYN---TGASVSLVSPDEMKIFEEIKSFVGDDENED-S 443 (605)
Q Consensus 377 ~rGiD~~~v~~VI~fd~P---------~s~~~yiqRiGRtgR~g~---~G~ai~~v~~~e~~~~~~~~~~l~~~~~~~-~ 443 (605)
.|+|+ +++.||++++- -+..+..|..||+||.|. .|.+.+|...+ +..+.+.++..-+.. .
T Consensus 421 -MGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~eD----L~~L~~~l~~p~epi~~ 494 (700)
T KOG0953|consen 421 -MGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSED----LKLLKRILKRPVEPIKN 494 (700)
T ss_pred -ccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeHhh----HHHHHHHHhCCchHHHh
Confidence 49999 89999998874 467788999999999865 57666666542 345555555433333 4
Q ss_pred CCCCCcccccHHHHHHhhhhHHH
Q 007402 444 NIIAPFPLLAQNAVESLRYRAED 466 (605)
Q Consensus 444 ~~i~~~~~~~~~~ve~~~yr~~d 466 (605)
.++.|.. +++|-|.|..-|
T Consensus 495 agl~pt~----eqie~fa~~~Pd 513 (700)
T KOG0953|consen 495 AGLWPTD----EQIELFAYHLPD 513 (700)
T ss_pred ccCCccH----HHHHHHHHhCCC
Confidence 5576665 778888776544
No 133
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=4.4e-15 Score=161.00 Aligned_cols=314 Identities=18% Similarity=0.226 Sum_probs=200.0
Q ss_pred CCCChHHHHHHH--HH----------HhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCC--CCCCCeEEEEcCcHHH
Q 007402 46 IQKPTLIQQASI--PL----------ILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPK--SKLAPAALVLVPTREL 111 (605)
Q Consensus 46 ~~~pt~iQ~~aI--p~----------~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~--~~~~~~~LilvPtreL 111 (605)
..+|+.||..-+ |. |-++--+||++.||||||. .+| |.++..+-.. ...+.-+=|.-|.|--
T Consensus 242 V~R~~EIQ~sR~~LPI~aeEq~IMEaIn~n~vvIIcGeTGsGKTT--QvP--QFLYEAGf~s~~~~~~gmIGITqPRRVA 317 (1172)
T KOG0926|consen 242 VSRPAEIQESRLDLPIVAEEQRIMEAINENPVVIICGETGSGKTT--QVP--QFLYEAGFASEQSSSPGMIGITQPRRVA 317 (1172)
T ss_pred ecCcHHHHHHHhcCchhHHHHHHHHHhhcCCeEEEecCCCCCccc--cch--HHHHHcccCCccCCCCCeeeecCchHHH
Confidence 356788886543 22 2223347899999999998 556 4455443221 2223344556688877
Q ss_pred HHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcc
Q 007402 112 CQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 191 (605)
Q Consensus 112 a~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad 191 (605)
|.-++++...-+..++. .+....-+.++ ......|-+.|.|.|+.-+.+. ..|...+.|||||||
T Consensus 318 aiamAkRVa~EL~~~~~--eVsYqIRfd~t--------i~e~T~IkFMTDGVLLrEi~~D-----flL~kYSvIIlDEAH 382 (1172)
T KOG0926|consen 318 AIAMAKRVAFELGVLGS--EVSYQIRFDGT--------IGEDTSIKFMTDGVLLREIEND-----FLLTKYSVIILDEAH 382 (1172)
T ss_pred HHHHHHHHHHHhccCcc--ceeEEEEeccc--------cCCCceeEEecchHHHHHHHHh-----HhhhhceeEEechhh
Confidence 77777665543333443 33333333332 2235689999999999988876 778999999999999
Q ss_pred hhccCCcHHHHHHHHhh-------CC------CCceEEEEeeecChhH-HHHHHHhcCCCeEEEcCCccCccccccCCCc
Q 007402 192 LLLSYGYEDDLKALSAV-------IP------RGCQCLLMSATSSSDV-DKLKKLILHNPYILTLPEVGDVKDEVIPKNV 257 (605)
Q Consensus 192 ~i~~~g~~~~l~~i~~~-------lp------~~~q~il~SATl~~~v-~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l 257 (605)
.=.- +.+.+--+++. .. +....|+||||+.-+- .+-+.+|-.-|.+|.++.. .. .+
T Consensus 383 ERSv--nTDILiGmLSRiV~LR~k~~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdAR------Qf--PV 452 (1172)
T KOG0926|consen 383 ERSV--NTDILIGMLSRIVPLRQKYYKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDAR------QF--PV 452 (1172)
T ss_pred hccc--hHHHHHHHHHHHHHHHHHHhhhhcccCceeEEEEeeeEEecccccCceecCCCCceeeeecc------cC--ce
Confidence 6211 12222222221 11 2467899999986322 2234445444556666541 11 22
Q ss_pred EEEEEEccccc----hHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHc---------------------------
Q 007402 258 QQFWISCSERD----KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKF--------------------------- 306 (605)
Q Consensus 258 ~q~~~~~~~~~----k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~--------------------------- 306 (605)
...+-.....+ -+.-.+.+- ..++.|-+|||+........|...|+..
T Consensus 453 sIHF~krT~~DYi~eAfrKtc~IH-~kLP~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~ 531 (1172)
T KOG0926|consen 453 SIHFNKRTPDDYIAEAFRKTCKIH-KKLPPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDI 531 (1172)
T ss_pred EEEeccCCCchHHHHHHHHHHHHh-hcCCCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhh
Confidence 22222222222 122222222 3567899999999999988888888652
Q ss_pred ------------------------------------------------------------------------CCcEEEEc
Q 007402 307 ------------------------------------------------------------------------GIKSAILN 314 (605)
Q Consensus 307 ------------------------------------------------------------------------gi~~~~l~ 314 (605)
..-|..|.
T Consensus 532 ~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLY 611 (1172)
T KOG0926|consen 532 GDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLY 611 (1172)
T ss_pred ccCcccccchhcccccchhhhhhhhhcccchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehh
Confidence 01245567
Q ss_pred CCCCHHHHHHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEE----
Q 007402 315 AELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN---- 390 (605)
Q Consensus 315 ~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~---- 390 (605)
+-|+.....++++.-.+|.--++|||++++ ..+.||+|.+||.
T Consensus 612 SLLs~~~Q~RVF~~~p~g~RLcVVaTNVAE---------------------------------TSLTIPgIkYVVD~Gr~ 658 (1172)
T KOG0926|consen 612 SLLSTEKQMRVFDEVPKGERLCVVATNVAE---------------------------------TSLTIPGIKYVVDCGRV 658 (1172)
T ss_pred hhcCHHHhhhhccCCCCCceEEEEeccchh---------------------------------cccccCCeeEEEeccch
Confidence 777888888888888889888999999998 4899999999996
Q ss_pred ----eCCCCCchhH----------HHhhcccccCCCCccEEEEeCCc
Q 007402 391 ----FEMPQNAAGY----------VHRIGRTGRAYNTGASVSLVSPD 423 (605)
Q Consensus 391 ----fd~P~s~~~y----------iqRiGRtgR~g~~G~ai~~v~~~ 423 (605)
||--+.+.+| -||+||+||.| +|.|+-+|+..
T Consensus 659 K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSA 704 (1172)
T KOG0926|consen 659 KERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSA 704 (1172)
T ss_pred hhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhH
Confidence 5555555544 49999999996 79999998763
No 134
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.65 E-value=6.3e-15 Score=133.02 Aligned_cols=144 Identities=38% Similarity=0.444 Sum_probs=109.7
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCH
Q 007402 64 KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPA 143 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~ 143 (605)
+.+++.++||+|||..++..+.+.... ....+++|++|++.|+.|+.+.+...... .+.+..+.+....
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~------~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 69 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS------LKGGQVLVLAPTRELANQVAERLKELFGE-----GIKVGYLIGGTSI 69 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc------ccCCCEEEEcCcHHHHHHHHHHHHHHhhC-----CcEEEEEecCcch
Confidence 468999999999999998888876654 12567999999999999999988876542 2556666666555
Q ss_pred HHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeec
Q 007402 144 SDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATS 222 (605)
Q Consensus 144 ~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl 222 (605)
...........+|+++|++.+...+.... .....+.++||||+|.+....+...........+...+++++|||+
T Consensus 70 ~~~~~~~~~~~~i~i~t~~~~~~~~~~~~----~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 70 KQQEKLLSGKTDIVVGTPGRLLDELERLK----LSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred hHHHHHhcCCCCEEEECcHHHHHHHHcCC----cchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 55555556789999999999988776543 3456788999999999887655444333344456788999999996
No 135
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.64 E-value=2.5e-13 Score=151.12 Aligned_cols=62 Identities=29% Similarity=0.303 Sum_probs=52.0
Q ss_pred HHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHH-HHh
Q 007402 59 LILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALI-ELC 126 (605)
Q Consensus 59 ~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~-~~~ 126 (605)
.+.+++.+++.|+||+|||+||++|++..+... .+.++||++||++|+.|+.+.+..+. ..+
T Consensus 12 al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~------~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l 74 (636)
T TIGR03117 12 SLRQKRIGMLEASTGVGKTLAMIMAALTMLKER------PDQKIAIAVPTLALMGQLWSELERLTAEGL 74 (636)
T ss_pred HHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc------cCceEEEECCcHHHHHHHHHHHHHHHHhhc
Confidence 344678899999999999999999999877531 25689999999999999999888877 444
No 136
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.63 E-value=2.7e-14 Score=152.61 Aligned_cols=308 Identities=20% Similarity=0.221 Sum_probs=199.7
Q ss_pred CCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHH-
Q 007402 46 IQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIE- 124 (605)
Q Consensus 46 ~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~- 124 (605)
+-....++.+.+..+-+.+-||+.+.||||||.. + -|.++..+- ....-+-+.-|.|.-|..++..+..-..
T Consensus 354 ~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQ--l--~QyL~edGY---~~~GmIGcTQPRRvAAiSVAkrVa~EM~~ 426 (1042)
T KOG0924|consen 354 YLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQ--L--AQYLYEDGY---ADNGMIGCTQPRRVAAISVAKRVAEEMGV 426 (1042)
T ss_pred hcchHHHHHHHHHHHhhCcEEEEEecCCCCchhh--h--HHHHHhccc---ccCCeeeecCchHHHHHHHHHHHHHHhCC
Confidence 3344667778888887888899999999999984 3 355555321 1122233444888888888777654331
Q ss_pred HhcCC--cceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhc-cCC-cHH
Q 007402 125 LCKGQ--VQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLL-SYG-YED 200 (605)
Q Consensus 125 ~~~~~--~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~-~~g-~~~ 200 (605)
.++.. +.|++-.+++. ..-|=+.|-+.|+.-.-.. ..|...++||+||||.=. +-. .-.
T Consensus 427 ~lG~~VGYsIRFEdvT~~------------~T~IkymTDGiLLrEsL~d-----~~L~kYSviImDEAHERslNtDilfG 489 (1042)
T KOG0924|consen 427 TLGDTVGYSIRFEDVTSE------------DTKIKYMTDGILLRESLKD-----RDLDKYSVIIMDEAHERSLNTDILFG 489 (1042)
T ss_pred ccccccceEEEeeecCCC------------ceeEEEeccchHHHHHhhh-----hhhhheeEEEechhhhcccchHHHHH
Confidence 12221 13444444442 2356688988887644332 567889999999999621 100 011
Q ss_pred HHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEEEEEccccchHH-HHHHHHHh
Q 007402 201 DLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLL-YILTLLKL 279 (605)
Q Consensus 201 ~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~~~~~k~~-~l~~llk~ 279 (605)
.++.++.. ..+..+|.+|||+.. +.+. .|+.+.....++. ... .+...|...+.+|-.. .+-..+..
T Consensus 490 llk~~lar-RrdlKliVtSATm~a--~kf~-nfFgn~p~f~IpG------RTy--PV~~~~~k~p~eDYVeaavkq~v~I 557 (1042)
T KOG0924|consen 490 LLKKVLAR-RRDLKLIVTSATMDA--QKFS-NFFGNCPQFTIPG------RTY--PVEIMYTKTPVEDYVEAAVKQAVQI 557 (1042)
T ss_pred HHHHHHHh-hccceEEEeeccccH--HHHH-HHhCCCceeeecC------Ccc--ceEEEeccCchHHHHHHHHhhheEe
Confidence 12222222 347889999999984 3343 4555555555543 111 3444444444333221 11222222
Q ss_pred --hcCCCeEEEEecchhH----HHHHHHHHHHc------CCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCccc
Q 007402 280 --ELVQKKALIFTNTIDM----AFRLKLFLEKF------GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKE 347 (605)
Q Consensus 280 --~~~~~k~IIFv~s~~~----~~~L~~~L~~~------gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~ 347 (605)
....|-+|||....+. |..+...|.+. ++.+..+.+.||+.-...+++.-..|.-.+||||++++
T Consensus 558 hl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAE--- 634 (1042)
T KOG0924|consen 558 HLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAE--- 634 (1042)
T ss_pred eccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchh---
Confidence 2345789999987654 55566666553 57788999999999999999988999999999999998
Q ss_pred ccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCC------------------CCCchhHHHhhccccc
Q 007402 348 KDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEM------------------PQNAAGYVHRIGRTGR 409 (605)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~------------------P~s~~~yiqRiGRtgR 409 (605)
..+.++++.+||..++ |-|-..--||.||+||
T Consensus 635 ------------------------------TSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGR 684 (1042)
T KOG0924|consen 635 ------------------------------TSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGR 684 (1042)
T ss_pred ------------------------------hceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCC
Confidence 4899999999997443 4556667799999999
Q ss_pred CCCCccEEEEeCCc
Q 007402 410 AYNTGASVSLVSPD 423 (605)
Q Consensus 410 ~g~~G~ai~~v~~~ 423 (605)
.| +|+|+-+++..
T Consensus 685 t~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 685 TG-PGTCYRLYTED 697 (1042)
T ss_pred CC-Ccceeeehhhh
Confidence 85 89999999874
No 137
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.60 E-value=2.9e-13 Score=159.49 Aligned_cols=108 Identities=16% Similarity=0.216 Sum_probs=78.1
Q ss_pred CCCeEEEEecchhHHHHHHHHHHHcCC--cEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCccc
Q 007402 282 VQKKALIFTNTIDMAFRLKLFLEKFGI--KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDS 359 (605)
Q Consensus 282 ~~~k~IIFv~s~~~~~~L~~~L~~~gi--~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~ 359 (605)
.+|++|||++|......++..|..... ...++.-++...+|..++++|+.+.-.||++|..
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~s----------------- 813 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSS----------------- 813 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCc-----------------
Confidence 478999999999999999999876432 1334443454457889999999988899999966
Q ss_pred ccccCCCCCccccccccccccccCC--ccEEEEeCCCC-Cc-----------------------------hhHHHhhccc
Q 007402 360 RKSKKHPKAKLDSEFGVVRGIDFKN--VHTVINFEMPQ-NA-----------------------------AGYVHRIGRT 407 (605)
Q Consensus 360 ~~~~~~~~~~~~~~~gv~rGiD~~~--v~~VI~fd~P~-s~-----------------------------~~yiqRiGRt 407 (605)
+++|||||+ +.+||...+|- ++ ..+.|-+||.
T Consensus 814 ----------------FwEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRl 877 (928)
T PRK08074 814 ----------------FWEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRL 877 (928)
T ss_pred ----------------ccCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhh
Confidence 457999996 47888877663 11 2235788999
Q ss_pred ccCCCCccEEEEeCC
Q 007402 408 GRAYNTGASVSLVSP 422 (605)
Q Consensus 408 gR~g~~G~ai~~v~~ 422 (605)
-|..+.--+++++.+
T Consensus 878 IRs~~D~G~v~ilD~ 892 (928)
T PRK08074 878 IRTETDRGTVFVLDR 892 (928)
T ss_pred cccCCceEEEEEecC
Confidence 887654334555554
No 138
>COG4889 Predicted helicase [General function prediction only]
Probab=99.59 E-value=5.3e-15 Score=161.33 Aligned_cols=340 Identities=22% Similarity=0.237 Sum_probs=193.7
Q ss_pred hcccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCC----cEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCC
Q 007402 23 EEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGK----DVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKL 98 (605)
Q Consensus 23 ~~~~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gk----dvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~ 98 (605)
++..+|+.+.- ..+...|--..-.+|+|+|+.||..+++|- .-=+.+.+|+|||...+- |.+.+.
T Consensus 137 es~IDW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLk-isEala--------- 205 (1518)
T COG4889 137 ESPIDWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLK-ISEALA--------- 205 (1518)
T ss_pred cCCCChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHH-HHHHHh---------
Confidence 34467777654 344445554566789999999999999871 234556789999997643 444443
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHH--------------------HH-----HHHHcCC
Q 007402 99 APAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS--------------------DL-----RAALAGP 153 (605)
Q Consensus 99 ~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~--------------------~~-----~~~l~~~ 153 (605)
..++|+|||+..|..|..+.+..-.. .+++...++++.... .. ...-..+
T Consensus 206 ~~~iL~LvPSIsLLsQTlrew~~~~~-----l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~ 280 (1518)
T COG4889 206 AARILFLVPSISLLSQTLREWTAQKE-----LDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANG 280 (1518)
T ss_pred hhheEeecchHHHHHHHHHHHhhccC-----ccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCC
Confidence 25699999999999998877654321 155555555543211 10 0111244
Q ss_pred CcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCcHHHHHHHHhhCC-----CCceEEEEeeecChhHHH
Q 007402 154 PDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP-----RGCQCLLMSATSSSDVDK 228 (605)
Q Consensus 154 ~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~~~l~~i~~~lp-----~~~q~il~SATl~~~v~~ 228 (605)
--||++|.+.+...-.... .-+..++++|+||||+-....+..+=..-+..+. +....+.|+||+.---+.
T Consensus 281 ~~vvFsTYQSl~~i~eAQe----~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS 356 (1518)
T COG4889 281 LTVVFSTYQSLPRIKEAQE----AGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSES 356 (1518)
T ss_pred cEEEEEcccchHHHHHHHH----cCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchh
Confidence 5799999998876655432 5567899999999998553322211111111110 123456788886422222
Q ss_pred HHHHh---------------------------------cCCCeEEEcCCccCccccccCCCcEEEEEEc------cccch
Q 007402 229 LKKLI---------------------------------LHNPYILTLPEVGDVKDEVIPKNVQQFWISC------SERDK 269 (605)
Q Consensus 229 l~~~~---------------------------------l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~------~~~~k 269 (605)
.+..- +.+..++.+.-. .......++...... +...|
T Consensus 357 ~K~kAkd~s~~l~SMDDe~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd----~~~i~~~~~~~~~~~~~~L~~dd~~k 432 (1518)
T COG4889 357 SKAKAKDHSAELSSMDDELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVD----KEVIAGVLQSVLSGPSKGLALDDVSK 432 (1518)
T ss_pred hhhhhhhccceeeccchhhhhchhhhcccHHHHHHhhhhccceEEEEEec----hhhhhhhhhhhccCcccccchhhhhh
Confidence 22111 111111111000 000000011000000 00111
Q ss_pred HH-HHHHHHHhhc-------------CCCeEEEEecchhHHHHHHHHHHHc-------------CCcE--EEEcCCCCHH
Q 007402 270 LL-YILTLLKLEL-------------VQKKALIFTNTIDMAFRLKLFLEKF-------------GIKS--AILNAELPQN 320 (605)
Q Consensus 270 ~~-~l~~llk~~~-------------~~~k~IIFv~s~~~~~~L~~~L~~~-------------gi~~--~~l~~~l~~~ 320 (605)
.. .+..+.+.+. +-.+.|-||.++.....++..++.. ++.+ -.+.|.|...
T Consensus 433 IvG~wnGlakr~g~~n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal 512 (1518)
T COG4889 433 IVGCWNGLAKRNGEDNDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNAL 512 (1518)
T ss_pred hhhhhhhhhhhccccccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHH
Confidence 11 1122222221 0126789999998877777666531 3444 4456778888
Q ss_pred HHHHHHHH---HHcCCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCc
Q 007402 321 SRLHILEE---FNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNA 397 (605)
Q Consensus 321 ~R~~i~~~---F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~ 397 (605)
+|...+.. |...++.||--... +++|||+|.++.||+||+-.+.
T Consensus 513 ~R~~l~~l~~~~~~neckIlSNaRc---------------------------------LSEGVDVPaLDsViFf~pr~sm 559 (1518)
T COG4889 513 ERLDLLELKNTFEPNECKILSNARC---------------------------------LSEGVDVPALDSVIFFDPRSSM 559 (1518)
T ss_pred HHHHHHhccCCCCcchheeeccchh---------------------------------hhcCCCccccceEEEecCchhH
Confidence 88544432 33456666644433 4479999999999999999999
Q ss_pred hhHHHhhcccccCC---CCccEEEE
Q 007402 398 AGYVHRIGRTGRAY---NTGASVSL 419 (605)
Q Consensus 398 ~~yiqRiGRtgR~g---~~G~ai~~ 419 (605)
-+.+|.+||+.|-. +-|+.|+=
T Consensus 560 VDIVQaVGRVMRKa~gK~yGYIILP 584 (1518)
T COG4889 560 VDIVQAVGRVMRKAKGKKYGYIILP 584 (1518)
T ss_pred HHHHHHHHHHHHhCcCCccceEEEE
Confidence 99999999999932 25655543
No 139
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.58 E-value=6.5e-14 Score=158.49 Aligned_cols=322 Identities=20% Similarity=0.251 Sum_probs=208.0
Q ss_pred CCChHHHHHHHHHHhC----CCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHH
Q 007402 47 QKPTLIQQASIPLILE----GKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMAL 122 (605)
Q Consensus 47 ~~pt~iQ~~aIp~~l~----gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l 122 (605)
.+++.+|-+.+.+++. +.++|+.-..|-|||.- .+..|..+..... .....||+||...+. .|...|..+
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvq-ti~fl~~l~~~~~----~~gpflvvvplst~~-~W~~ef~~w 442 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQ-TITFLSYLFHSLQ----IHGPFLVVVPLSTIT-AWEREFETW 442 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchH-HHHHHHHHHHhhh----ccCCeEEEeehhhhH-HHHHHHHHH
Confidence 6789999999988874 58999999999999964 2333444443211 123389999976644 456666666
Q ss_pred HHHhcCCcceEEEEEeCCCCHHHHHHHH----cC-----CCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchh
Q 007402 123 IELCKGQVQLKVVQLTSSMPASDLRAAL----AG-----PPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLL 193 (605)
Q Consensus 123 ~~~~~~~~~i~v~~l~~~~~~~~~~~~l----~~-----~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i 193 (605)
+ +++++++.|+.......+.. .. +++++++|.+.++.-... +.--.+.+++|||||++
T Consensus 443 ~-------~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~------L~~i~w~~~~vDeahrL 509 (1373)
T KOG0384|consen 443 T-------DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAE------LSKIPWRYLLVDEAHRL 509 (1373)
T ss_pred h-------hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhh------hccCCcceeeecHHhhc
Confidence 5 68899999987655443322 12 589999998877542211 22234679999999998
Q ss_pred ccCCcHHHHHHHHhhCCCCceEEEEeee-cChhHHHHHHHh--cC-----------------------------CCe---
Q 007402 194 LSYGYEDDLKALSAVIPRGCQCLLMSAT-SSSDVDKLKKLI--LH-----------------------------NPY--- 238 (605)
Q Consensus 194 ~~~g~~~~l~~i~~~lp~~~q~il~SAT-l~~~v~~l~~~~--l~-----------------------------~p~--- 238 (605)
-+.. ..+...+..+.-.. -+|+|.| +-+.+.+|..+. +. .|.
T Consensus 510 kN~~--~~l~~~l~~f~~~~-rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lR 586 (1373)
T KOG0384|consen 510 KNDE--SKLYESLNQFKMNH-RLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLR 586 (1373)
T ss_pred CchH--HHHHHHHHHhcccc-eeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHH
Confidence 6542 22333344443333 3455555 344555554332 10 011
Q ss_pred ----------------EEEcCCccC------------------ccccccCC--C--------cEEEEEEccccchHH---
Q 007402 239 ----------------ILTLPEVGD------------------VKDEVIPK--N--------VQQFWISCSERDKLL--- 271 (605)
Q Consensus 239 ----------------~i~l~~~~~------------------~~~~~~~~--~--------l~q~~~~~~~~~k~~--- 271 (605)
++.++-..- ......+. | -.|-|+.-..+++++
T Consensus 587 r~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~ 666 (1373)
T KOG0384|consen 587 RLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDF 666 (1373)
T ss_pred HHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhh
Confidence 111110000 00000000 0 001111111111111
Q ss_pred -------HHHHH--------------HHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHH
Q 007402 272 -------YILTL--------------LKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 330 (605)
Q Consensus 272 -------~l~~l--------------lk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~ 330 (605)
.|..+ -++...+.++|||...+..-.-|+.+|...+++.--|.|..+.+.|...++.||
T Consensus 667 ~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFn 746 (1373)
T KOG0384|consen 667 RDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFN 746 (1373)
T ss_pred hhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhcc
Confidence 11111 123334579999999999999999999999999999999999999999999998
Q ss_pred c---CCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhccc
Q 007402 331 A---GLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRT 407 (605)
Q Consensus 331 ~---g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRt 407 (605)
+ ..+-.|+||.... + |||+-.++.||.||--|+|..-+|...||
T Consensus 747 ap~SddFvFLLSTRAGG-------------------------------L--GINLatADTVIIFDSDWNPQNDLQAqARa 793 (1373)
T KOG0384|consen 747 APDSDDFVFLLSTRAGG-------------------------------L--GINLATADTVIIFDSDWNPQNDLQAQARA 793 (1373)
T ss_pred CCCCCceEEEEecccCc-------------------------------c--cccccccceEEEeCCCCCcchHHHHHHHH
Confidence 7 4577899997765 3 99999999999999999999999999999
Q ss_pred ccCCCCccE--EEEeCCc
Q 007402 408 GRAYNTGAS--VSLVSPD 423 (605)
Q Consensus 408 gR~g~~G~a--i~~v~~~ 423 (605)
.|.|++..+ +-||+..
T Consensus 794 HRIGQkk~VnVYRLVTk~ 811 (1373)
T KOG0384|consen 794 HRIGQKKHVNVYRLVTKN 811 (1373)
T ss_pred HhhcccceEEEEEEecCC
Confidence 999997654 6677764
No 140
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.58 E-value=1.1e-12 Score=146.30 Aligned_cols=326 Identities=16% Similarity=0.202 Sum_probs=201.0
Q ss_pred CCChHHHHHHHHHHhC---C-------CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHH
Q 007402 47 QKPTLIQQASIPLILE---G-------KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVY 116 (605)
Q Consensus 47 ~~pt~iQ~~aIp~~l~---g-------kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~ 116 (605)
..++|+|.+.+..+-. | ..+|+.-..|+|||+. +|+.++.++........--.++||++| ..|+..|+
T Consensus 237 ~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq-~IsflwtlLrq~P~~~~~~~k~lVV~P-~sLv~nWk 314 (776)
T KOG0390|consen 237 KILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQ-CISFIWTLLRQFPQAKPLINKPLVVAP-SSLVNNWK 314 (776)
T ss_pred hhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHH-HHHHHHHHHHhCcCccccccccEEEcc-HHHHHHHH
Confidence 3568999999976543 2 2477888899999986 466777777643221122367999999 57888899
Q ss_pred HHHHHHHHHhcCCcceEEEEEeCCCCH--HHHHHHHc-----CCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeC
Q 007402 117 SEVMALIELCKGQVQLKVVQLTSSMPA--SDLRAALA-----GPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDE 189 (605)
Q Consensus 117 ~~~~~l~~~~~~~~~i~v~~l~~~~~~--~~~~~~l~-----~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDE 189 (605)
.+|.++... . .+....+++..+. ..+...+. -...|++-+.+.+.+++.. +....+++||+||
T Consensus 315 kEF~KWl~~--~--~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~------il~~~~glLVcDE 384 (776)
T KOG0390|consen 315 KEFGKWLGN--H--RINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK------ILLIRPGLLVCDE 384 (776)
T ss_pred HHHHHhccc--c--ccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH------HhcCCCCeEEECC
Confidence 988887642 1 5777777777663 11112221 1234666677777665553 5566789999999
Q ss_pred cchhccCCcHHHHHHHHhhCCCCceEEEEeeec-ChhHHHHHHHh-cCCCeEEEcCC-----------------------
Q 007402 190 ADLLLSYGYEDDLKALSAVIPRGCQCLLMSATS-SSDVDKLKKLI-LHNPYILTLPE----------------------- 244 (605)
Q Consensus 190 ad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl-~~~v~~l~~~~-l~~p~~i~l~~----------------------- 244 (605)
.|.+-+. ...+...+..+. ...-|++|.|+ -+++.++..++ +-+|-.+....
T Consensus 385 GHrlkN~--~s~~~kaL~~l~-t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~ 461 (776)
T KOG0390|consen 385 GHRLKNS--DSLTLKALSSLK-TPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDR 461 (776)
T ss_pred CCCccch--hhHHHHHHHhcC-CCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhh
Confidence 9997654 333444444443 34567788885 23333332221 12222211000
Q ss_pred --------------------ccCccccccCCCcEEEEEEccccc------------------------------------
Q 007402 245 --------------------VGDVKDEVIPKNVQQFWISCSERD------------------------------------ 268 (605)
Q Consensus 245 --------------------~~~~~~~~~~~~l~q~~~~~~~~~------------------------------------ 268 (605)
.+.. -.........+++.|....
T Consensus 462 ~~~~rl~eL~~~t~~fi~rrt~~i-l~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP 540 (776)
T KOG0390|consen 462 EREERLQELRELTNKFILRRTGDI-LLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHP 540 (776)
T ss_pred hhHHHHHHHHHHHHhheeecccch-hhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCH
Confidence 0000 0000112333333333211
Q ss_pred --------------------------------------hHHHHHHHHHhhcCCCeEEEE----ecchhHHHHHHHHHHHc
Q 007402 269 --------------------------------------KLLYILTLLKLELVQKKALIF----TNTIDMAFRLKLFLEKF 306 (605)
Q Consensus 269 --------------------------------------k~~~l~~llk~~~~~~k~IIF----v~s~~~~~~L~~~L~~~ 306 (605)
|+..|..++. .++.++++| .|-......+..+++-.
T Consensus 541 ~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~--~~~ek~~~~~v~Isny~~tldl~e~~~~~~ 618 (776)
T KOG0390|consen 541 SLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLE--VIREKLLVKSVLISNYTQTLDLFEQLCRWR 618 (776)
T ss_pred HhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHH--HHhhhcceEEEEeccHHHHHHHHHHHHhhc
Confidence 1122222210 112233333 34444455555566667
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHcCC--CcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCC
Q 007402 307 GIKSAILNAELPQNSRLHILEEFNAGL--FDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 384 (605)
Q Consensus 307 gi~~~~l~~~l~~~~R~~i~~~F~~g~--~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~ 384 (605)
|+.++.|+|.|+..+|..+++.||... ..|++++..+. | .||++-+
T Consensus 619 g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAg------------------------------g--~GinLiG 666 (776)
T KOG0390|consen 619 GYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAG------------------------------G--EGLNLIG 666 (776)
T ss_pred CceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccc------------------------------c--Cceeecc
Confidence 999999999999999999999999843 35777775543 2 5999999
Q ss_pred ccEEEEeCCCCCchhHHHhhcccccCCCCccE--EEEeCC
Q 007402 385 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGAS--VSLVSP 422 (605)
Q Consensus 385 v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~a--i~~v~~ 422 (605)
.+.||.||++|+|..-.|.++|+-|.|++-.| +.|++.
T Consensus 667 AsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlat 706 (776)
T KOG0390|consen 667 ASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLAT 706 (776)
T ss_pred cceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecC
Confidence 99999999999999999999999999997766 445554
No 141
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.57 E-value=7.8e-13 Score=137.08 Aligned_cols=340 Identities=20% Similarity=0.238 Sum_probs=213.0
Q ss_pred chhhchhHHhhhhhhcccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHH
Q 007402 9 SKEVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRL 88 (605)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~l 88 (605)
++........++.......|...+.+++-..-|++.---.-+..+.+....+.+.+-+++.+.||||||...--.++...
T Consensus 8 ~~~~~~~~~~~~~~k~~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~ 87 (699)
T KOG0925|consen 8 SGLLRRISGAEENAKAINPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYE 87 (699)
T ss_pred cchhhccccccchhhhcCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHH
Confidence 33334444444455557889999999999998888644445666777778888889999999999999984322233433
Q ss_pred hhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHH-hcC--CcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHH
Q 007402 89 FNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIEL-CKG--QVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMP 165 (605)
Q Consensus 89 l~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~-~~~--~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~ 165 (605)
+.. ...+...-|.|--|.+++.+...-... ++. ...|+.-.+++. ...|. ++|.++|+
T Consensus 88 ~~~-------~~~v~CTQprrvaamsva~RVadEMDv~lG~EVGysIrfEdC~~~------~T~Lk------y~tDgmLl 148 (699)
T KOG0925|consen 88 LSH-------LTGVACTQPRRVAAMSVAQRVADEMDVTLGEEVGYSIRFEDCTSP------NTLLK------YCTDGMLL 148 (699)
T ss_pred Hhh-------ccceeecCchHHHHHHHHHHHHHHhccccchhccccccccccCCh------hHHHH------HhcchHHH
Confidence 321 133555568887777777665543210 111 012333333322 12221 45666665
Q ss_pred HHHhcCCCCCcccCCCceEEEEeCcch--hccCCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcC
Q 007402 166 KCLSTGVLQSKSFSDSLKILVLDEADL--LLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLP 243 (605)
Q Consensus 166 ~~l~~~~~~~~~~l~~l~~lViDEad~--i~~~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~ 243 (605)
.-.-+. -.+...++||+||||. +...-....++.++..-| ...+|.||||+... -.+.|+.|+.++.+.
T Consensus 149 rEams~-----p~l~~y~viiLDeahERtlATDiLmGllk~v~~~rp-dLk~vvmSatl~a~---Kfq~yf~n~Pll~vp 219 (699)
T KOG0925|consen 149 REAMSD-----PLLGRYGVIILDEAHERTLATDILMGLLKEVVRNRP-DLKLVVMSATLDAE---KFQRYFGNAPLLAVP 219 (699)
T ss_pred HHHhhC-----cccccccEEEechhhhhhHHHHHHHHHHHHHHhhCC-CceEEEeecccchH---HHHHHhCCCCeeecC
Confidence 544332 5678899999999996 211112334555555554 88999999998633 345677788777765
Q ss_pred CccCccccccCCCcEEEEEEccccchHHHHH-HHHHhh--cCCCeEEEEecchhHHHH----HHHHHHHcC-----CcEE
Q 007402 244 EVGDVKDEVIPKNVQQFWISCSERDKLLYIL-TLLKLE--LVQKKALIFTNTIDMAFR----LKLFLEKFG-----IKSA 311 (605)
Q Consensus 244 ~~~~~~~~~~~~~l~q~~~~~~~~~k~~~l~-~llk~~--~~~~k~IIFv~s~~~~~~----L~~~L~~~g-----i~~~ 311 (605)
. ...+..+|....+.|-+...+ .++..+ ...|-+|||....+..+. +.......+ +++.
T Consensus 220 g---------~~PvEi~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~ 290 (699)
T KOG0925|consen 220 G---------THPVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVV 290 (699)
T ss_pred C---------CCceEEEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEE
Confidence 3 124555666666666554332 233322 237899999999766444 443333332 4667
Q ss_pred EEcCCCCHHHHHHHHHHHH---cC--CCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCcc
Q 007402 312 ILNAELPQNSRLHILEEFN---AG--LFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 386 (605)
Q Consensus 312 ~l~~~l~~~~R~~i~~~F~---~g--~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~ 386 (605)
.|+ ++..+.|++--. +| .-.|+|+|..++ -.+.++.|.
T Consensus 291 PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniae---------------------------------tsltidgiv 333 (699)
T KOG0925|consen 291 PLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAE---------------------------------TSLTIDGIV 333 (699)
T ss_pred ecC----chhhccccCCCCcccCCCccceEEEEecchh---------------------------------eeeeeccEE
Confidence 777 333344433321 22 246999999987 377788888
Q ss_pred EEEEeCC------------------CCCchhHHHhhcccccCCCCccEEEEeCCc
Q 007402 387 TVINFEM------------------PQNAAGYVHRIGRTGRAYNTGASVSLVSPD 423 (605)
Q Consensus 387 ~VI~fd~------------------P~s~~~yiqRiGRtgR~g~~G~ai~~v~~~ 423 (605)
+||.-++ |-|-.+-.||.||+||. .+|.|+.+++++
T Consensus 334 ~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 334 FVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred EEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 8886443 55667788999999998 799999999874
No 142
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.56 E-value=1.1e-14 Score=138.87 Aligned_cols=157 Identities=22% Similarity=0.200 Sum_probs=103.4
Q ss_pred CChHHHHHHHHHHhC-------CCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHH
Q 007402 48 KPTLIQQASIPLILE-------GKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVM 120 (605)
Q Consensus 48 ~pt~iQ~~aIp~~l~-------gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~ 120 (605)
+|+++|.+|+..+.. .+.+++.+|||||||.+++..+.+... ++||+||+..|+.|+.+.+.
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~-----------~~l~~~p~~~l~~Q~~~~~~ 71 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR-----------KVLIVAPNISLLEQWYDEFD 71 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC-----------EEEEEESSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc-----------ceeEecCHHHHHHHHHHHHH
Confidence 579999999998884 689999999999999998865555432 69999999999999999986
Q ss_pred HHHHHhcCCcceEEE----------EEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCC-------CcccCCCce
Q 007402 121 ALIELCKGQVQLKVV----------QLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQ-------SKSFSDSLK 183 (605)
Q Consensus 121 ~l~~~~~~~~~i~v~----------~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~-------~~~~l~~l~ 183 (605)
.+..... ..... ..............-....+++++|.+.+.......... .........
T Consensus 72 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (184)
T PF04851_consen 72 DFGSEKY---NFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFD 148 (184)
T ss_dssp HHSTTSE---EEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSES
T ss_pred Hhhhhhh---hhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCC
Confidence 5543211 01000 011111111223334567899999999998776542210 112345678
Q ss_pred EEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecC
Q 007402 184 ILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSS 223 (605)
Q Consensus 184 ~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~ 223 (605)
+||+||||++.+.. ....++. .....+++||||+.
T Consensus 149 ~vI~DEaH~~~~~~---~~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 149 LVIIDEAHHYPSDS---SYREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp EEEEETGGCTHHHH---HHHHHHH--SSCCEEEEEESS-S
T ss_pred EEEEehhhhcCCHH---HHHHHHc--CCCCeEEEEEeCcc
Confidence 99999999976443 1445544 44677899999985
No 143
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.56 E-value=2.1e-13 Score=153.78 Aligned_cols=320 Identities=20% Similarity=0.227 Sum_probs=201.7
Q ss_pred hHHHHHHHHHHh--C--CCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCC-CCCCCeEEEEcCcHHHHHHHHHHHHHHHH
Q 007402 50 TLIQQASIPLIL--E--GKDVVARAKTGSGKTFAYLLPLLHRLFNESSPK-SKLAPAALVLVPTRELCQQVYSEVMALIE 124 (605)
Q Consensus 50 t~iQ~~aIp~~l--~--gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~-~~~~~~~LilvPtreLa~Qv~~~~~~l~~ 124 (605)
+.||++.|.++. + +=+-|++...|-|||+--+--+.-....+.... .......||+||+ .|+-.|..++.+++.
T Consensus 977 RkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf~p 1055 (1549)
T KOG0392|consen 977 RKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKFFP 1055 (1549)
T ss_pred HHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHhcc
Confidence 678999988753 2 236799999999999975444444444432222 2234458999994 899999999988876
Q ss_pred HhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCcHHHHHH
Q 007402 125 LCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 204 (605)
Q Consensus 125 ~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~~~l~~ 204 (605)
+ +++..+.|.-......+---.+.+|+|+.++.+.+-+.. +.-..+.+.|+||-|.|-+. ...+.+
T Consensus 1056 f------L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~------l~~~~wNYcVLDEGHVikN~--ktkl~k 1121 (1549)
T KOG0392|consen 1056 F------LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY------LIKIDWNYCVLDEGHVIKNS--KTKLTK 1121 (1549)
T ss_pred h------hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH------HHhcccceEEecCcceecch--HHHHHH
Confidence 4 455555555322222222224569999998776533321 22245789999999998765 555666
Q ss_pred HHhhCCCCceEEEEeee-cChhHHHHHHHh---cC--------------CCeEEEcCCc---------------------
Q 007402 205 LSAVIPRGCQCLLMSAT-SSSDVDKLKKLI---LH--------------NPYILTLPEV--------------------- 245 (605)
Q Consensus 205 i~~~lp~~~q~il~SAT-l~~~v~~l~~~~---l~--------------~p~~i~l~~~--------------------- 245 (605)
..+.+..+.+.| +|.| +-+.+.+|..+| |. .|+.-..+..
T Consensus 1122 avkqL~a~hRLI-LSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVL 1200 (1549)
T KOG0392|consen 1122 AVKQLRANHRLI-LSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVL 1200 (1549)
T ss_pred HHHHHhhcceEE-eeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHH
Confidence 666666555555 5555 455565555443 11 1111000000
Q ss_pred --------cCccccccCCCcEEEEEEccc---------------------------------------------------
Q 007402 246 --------GDVKDEVIPKNVQQFWISCSE--------------------------------------------------- 266 (605)
Q Consensus 246 --------~~~~~~~~~~~l~q~~~~~~~--------------------------------------------------- 266 (605)
+++-....+..++.||....+
T Consensus 1201 PF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaL 1280 (1549)
T KOG0392|consen 1201 PFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPAL 1280 (1549)
T ss_pred HHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcce
Confidence 000000111122222221110
Q ss_pred ----------------------------cchHHHHHHHHHhhc---------------CCCeEEEEecchhHHHHHHHHH
Q 007402 267 ----------------------------RDKLLYILTLLKLEL---------------VQKKALIFTNTIDMAFRLKLFL 303 (605)
Q Consensus 267 ----------------------------~~k~~~l~~llk~~~---------------~~~k~IIFv~s~~~~~~L~~~L 303 (605)
..|+..|-.++..-. .+.++||||.-++...-+..-|
T Consensus 1281 vlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL 1360 (1549)
T KOG0392|consen 1281 VLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDL 1360 (1549)
T ss_pred eeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHH
Confidence 112222223322110 2358999999999998887776
Q ss_pred HHcCC---cEEEEcCCCCHHHHHHHHHHHHcC-CCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccc
Q 007402 304 EKFGI---KSAILNAELPQNSRLHILEEFNAG-LFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379 (605)
Q Consensus 304 ~~~gi---~~~~l~~~l~~~~R~~i~~~F~~g-~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rG 379 (605)
-+--. ....|.|..|+..|..++++||++ .++||+-|.-.. |+ |
T Consensus 1361 ~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVG------------------------------GL--G 1408 (1549)
T KOG0392|consen 1361 FKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVG------------------------------GL--G 1408 (1549)
T ss_pred hhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeecc------------------------------cc--c
Confidence 55433 334799999999999999999999 899988775432 34 9
Q ss_pred cccCCccEEEEeCCCCCchhHHHhhcccccCCCCccEE
Q 007402 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASV 417 (605)
Q Consensus 380 iD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai 417 (605)
+|+.+.+.||+++--|+|-.-+|.+-|+.|.|++-++-
T Consensus 1409 LNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVN 1446 (1549)
T KOG0392|consen 1409 LNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVN 1446 (1549)
T ss_pred cccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeee
Confidence 99999999999999999999999999999999986653
No 144
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.53 E-value=6.7e-13 Score=144.61 Aligned_cols=323 Identities=21% Similarity=0.281 Sum_probs=201.4
Q ss_pred ChHHHHHHHHHHh----CCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHH
Q 007402 49 PTLIQQASIPLIL----EGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIE 124 (605)
Q Consensus 49 pt~iQ~~aIp~~l----~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~ 124 (605)
+-+||.-.+.++. .+=+.|+....|-|||. -+|..+..+...+ ....-||+||+..|-+ +++.+..
T Consensus 400 LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTi-QvIaFlayLkq~g-----~~gpHLVVvPsSTleN----WlrEf~k 469 (941)
T KOG0389|consen 400 LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTI-QVIAFLAYLKQIG-----NPGPHLVVVPSSTLEN----WLREFAK 469 (941)
T ss_pred ccchhhhhHHHHHHHHHccccceehhhccCcchh-HHHHHHHHHHHcC-----CCCCcEEEecchhHHH----HHHHHHH
Confidence 6789998888754 23356899999999995 4566666655532 2444899999887754 4555666
Q ss_pred HhcCCcceEEEEEeCCCCHHHHHH-HHc---CCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCcHH
Q 007402 125 LCKGQVQLKVVQLTSSMPASDLRA-ALA---GPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYED 200 (605)
Q Consensus 125 ~~~~~~~i~v~~l~~~~~~~~~~~-~l~---~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~~ 200 (605)
||+ .++|..++|......+.+ .+. ..+||+|+|+..+..--... ..+.-.++.++|+||+|.+-+.+ .+
T Consensus 470 wCP---sl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDR---sflk~~~~n~viyDEgHmLKN~~-Se 542 (941)
T KOG0389|consen 470 WCP---SLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDR---SFLKNQKFNYVIYDEGHMLKNRT-SE 542 (941)
T ss_pred hCC---ceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHH---HHHHhccccEEEecchhhhhccc-hH
Confidence 776 599999999875433222 222 47899999976553211110 01222568899999999887765 33
Q ss_pred HHHHHHhhCCCCceEEEEeeec-ChhHHHHHHHhc-------------------C-------------------------
Q 007402 201 DLKALSAVIPRGCQCLLMSATS-SSDVDKLKKLIL-------------------H------------------------- 235 (605)
Q Consensus 201 ~l~~i~~~lp~~~q~il~SATl-~~~v~~l~~~~l-------------------~------------------------- 235 (605)
.+..++.. + .-+.+|++.|+ -+++.+|..+.. .
T Consensus 543 Ry~~LM~I-~-An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im 620 (941)
T KOG0389|consen 543 RYKHLMSI-N-ANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIM 620 (941)
T ss_pred HHHHhccc-c-ccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhh
Confidence 34444332 2 34556777773 333333322210 0
Q ss_pred CCeEEE---------------------cCCc----------------cCccccccCCC----------------cEEEEE
Q 007402 236 NPYILT---------------------LPEV----------------GDVKDEVIPKN----------------VQQFWI 262 (605)
Q Consensus 236 ~p~~i~---------------------l~~~----------------~~~~~~~~~~~----------------l~q~~~ 262 (605)
.|.++. +.+. ..........+ ..++|-
T Consensus 621 ~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~ 700 (941)
T KOG0389|consen 621 KPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYT 700 (941)
T ss_pred hHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhcc
Confidence 111110 0000 00000000000 000000
Q ss_pred ------------------Ecc-------------------------------------ccchHHHHHHHHHhh-cCCCeE
Q 007402 263 ------------------SCS-------------------------------------ERDKLLYILTLLKLE-LVQKKA 286 (605)
Q Consensus 263 ------------------~~~-------------------------------------~~~k~~~l~~llk~~-~~~~k~ 286 (605)
.+. ...|+..|..+|..- ..+.++
T Consensus 701 de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RV 780 (941)
T KOG0389|consen 701 DEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRV 780 (941)
T ss_pred HHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEE
Confidence 000 001222222222211 124699
Q ss_pred EEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCC--CcEEEEcCCCCcccccccCCCCCcccccccC
Q 007402 287 LIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGL--FDYLIATDDTQTKEKDQSDEGGHVDSRKSKK 364 (605)
Q Consensus 287 IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~--~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~ 364 (605)
|||..-...-.-|...|...++..+-|.|..+.+.|++++++|+..+ +-.|++|-..
T Consensus 781 LiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAG--------------------- 839 (941)
T KOG0389|consen 781 LIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAG--------------------- 839 (941)
T ss_pred EEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccC---------------------
Confidence 99999999999999999999999999999999999999999999864 3456667443
Q ss_pred CCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCc--cEEEEeCCc
Q 007402 365 HPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTG--ASVSLVSPD 423 (605)
Q Consensus 365 ~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G--~ai~~v~~~ 423 (605)
|+ ||++..+++||.||+--+|-.-.|.--||.|.|+.- +++-|++..
T Consensus 840 ----------G~--GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~ 888 (941)
T KOG0389|consen 840 ----------GF--GINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKS 888 (941)
T ss_pred ----------cc--eecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecC
Confidence 34 999999999999999999999999999999999854 456677764
No 145
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.51 E-value=6.1e-12 Score=141.80 Aligned_cols=134 Identities=19% Similarity=0.224 Sum_probs=94.1
Q ss_pred EEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHH--
Q 007402 68 ARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASD-- 145 (605)
Q Consensus 68 v~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~-- 145 (605)
..+-+|||||.+|+-.+-+.+.. |..+|||+|...|+.|+.+.|+..+. .-.+..++++.+...
T Consensus 165 ~~~~~GSGKTevyl~~i~~~l~~--------Gk~vLvLvPEi~lt~q~~~rl~~~f~------~~~v~~lhS~l~~~~R~ 230 (665)
T PRK14873 165 WQALPGEDWARRLAAAAAATLRA--------GRGALVVVPDQRDVDRLEAALRALLG------AGDVAVLSAGLGPADRY 230 (665)
T ss_pred hhcCCCCcHHHHHHHHHHHHHHc--------CCeEEEEecchhhHHHHHHHHHHHcC------CCcEEEECCCCCHHHHH
Confidence 33446999999997766665543 56699999999999999999987652 245777888877653
Q ss_pred --HHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccC---C---cHHHHHHHHhhCCCCceEEE
Q 007402 146 --LRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSY---G---YEDDLKALSAVIPRGCQCLL 217 (605)
Q Consensus 146 --~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~---g---~~~~l~~i~~~lp~~~q~il 217 (605)
+.....+...|||+| ...+. ..+.++.+|||||-|.-.-. + +..++-..... ..++.+||
T Consensus 231 ~~w~~~~~G~~~IViGt---------RSAvF--aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~-~~~~~lvL 298 (665)
T PRK14873 231 RRWLAVLRGQARVVVGT---------RSAVF--APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAH-QHGCALLI 298 (665)
T ss_pred HHHHHHhCCCCcEEEEc---------ceeEE--eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHH-HcCCcEEE
Confidence 344556778999999 33322 56789999999999853211 1 12334333333 24788999
Q ss_pred EeeecChhHH
Q 007402 218 MSATSSSDVD 227 (605)
Q Consensus 218 ~SATl~~~v~ 227 (605)
.|||++-+..
T Consensus 299 gSaTPSles~ 308 (665)
T PRK14873 299 GGHARTAEAQ 308 (665)
T ss_pred ECCCCCHHHH
Confidence 9999985543
No 146
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.50 E-value=5.1e-12 Score=134.31 Aligned_cols=243 Identities=18% Similarity=0.191 Sum_probs=176.5
Q ss_pred CCCcEEEECCchHHHHHhcC--CCCCcccCCCceEEEEeCcchhccC--CcHHHHHHHHhhCCCC---------------
Q 007402 152 GPPDIVIATPGCMPKCLSTG--VLQSKSFSDSLKILVLDEADLLLSY--GYEDDLKALSAVIPRG--------------- 212 (605)
Q Consensus 152 ~~~dIvV~TP~~l~~~l~~~--~~~~~~~l~~l~~lViDEad~i~~~--g~~~~l~~i~~~lp~~--------------- 212 (605)
...|||||+|=-|...+... .-.....|+++.++|||.||.|+-. .+-..+-..+...|+.
T Consensus 130 y~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~~~~DfsRVR~w~Ld 209 (442)
T PF06862_consen 130 YSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKSHDTDFSRVRPWYLD 209 (442)
T ss_pred ccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHc
Confidence 45699999998888777741 1123477899999999999987643 3334444444445531
Q ss_pred ------ceEEEEeeecChhHHHHHHHhcCCCeE-EEcCCccC--ccccccCCCcEEEEEEcc-------ccchHHHHH--
Q 007402 213 ------CQCLLMSATSSSDVDKLKKLILHNPYI-LTLPEVGD--VKDEVIPKNVQQFWISCS-------ERDKLLYIL-- 274 (605)
Q Consensus 213 ------~q~il~SATl~~~v~~l~~~~l~~p~~-i~l~~~~~--~~~~~~~~~l~q~~~~~~-------~~~k~~~l~-- 274 (605)
+|+|++|+..++++..|....|.|..- +.+..... ..-......+.|.+...+ .+.++....
T Consensus 210 g~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~ 289 (442)
T PF06862_consen 210 GQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKK 289 (442)
T ss_pred CcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHH
Confidence 699999999999999999988776432 22221111 111234456788887643 222333222
Q ss_pred ---HHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCccccccc
Q 007402 275 ---TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQS 351 (605)
Q Consensus 275 ---~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~ 351 (605)
.+.+ ....+.+|||++|--.-.++..+|...++..+.+|-..+..+-..+-..|-.|...+|+-|.-.-
T Consensus 290 iLP~l~~-~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~H------- 361 (442)
T PF06862_consen 290 ILPQLKR-DSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFH------- 361 (442)
T ss_pred HHHHhhh-ccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHh-------
Confidence 2221 23457899999999999999999999999999999999999988999999999999999996543
Q ss_pred CCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCC------CccEEEEeCCchh
Q 007402 352 DEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYN------TGASVSLVSPDEM 425 (605)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~------~G~ai~~v~~~e~ 425 (605)
..|-..+.+|..||.|.+|..+.-|-.-+.-.+.... ...+.++++.-|.
T Consensus 362 ------------------------FfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~ 417 (442)
T PF06862_consen 362 ------------------------FFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDA 417 (442)
T ss_pred ------------------------hhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHH
Confidence 4467888999999999999999988877755444332 5788888887665
Q ss_pred h
Q 007402 426 K 426 (605)
Q Consensus 426 ~ 426 (605)
-
T Consensus 418 ~ 418 (442)
T PF06862_consen 418 L 418 (442)
T ss_pred H
Confidence 3
No 147
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.49 E-value=3.5e-12 Score=132.57 Aligned_cols=348 Identities=14% Similarity=0.188 Sum_probs=213.1
Q ss_pred cCcccCC--CCHHHHHHHHHCCCCCChHHHHHHHHHHhC-CCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeE
Q 007402 26 KSFEELG--LDLRLVHALNKKGIQKPTLIQQASIPLILE-GKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAA 102 (605)
Q Consensus 26 ~~f~~~~--L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~-gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~ 102 (605)
..|++|. +|+.|+.+ +-|+|.+.+..+|+ |..+++....|-|||.-+ |.|...... ....
T Consensus 182 a~~~~l~ev~d~kLvs~--------LlPFQreGv~faL~RgGR~llADeMGLGKTiQA-laIA~yyra--------Ewpl 244 (689)
T KOG1000|consen 182 AAPSDLNEVMDPKLVSR--------LLPFQREGVIFALERGGRILLADEMGLGKTIQA-LAIARYYRA--------EWPL 244 (689)
T ss_pred cCHHHHhhccCHHHHHh--------hCchhhhhHHHHHhcCCeEEEecccccchHHHH-HHHHHHHhh--------cCcE
Confidence 3344444 45666554 46899999988775 678999999999999865 334333333 2338
Q ss_pred EEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCc
Q 007402 103 LVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSL 182 (605)
Q Consensus 103 LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l 182 (605)
||+||. .|-..|.+.++.++..|.. +.++ .++.+. -..+-..+.|.|.+.+.+..+ ..- +.....
T Consensus 245 liVcPA-svrftWa~al~r~lps~~p---i~vv--~~~~D~---~~~~~t~~~v~ivSye~ls~l-~~~-----l~~~~~ 309 (689)
T KOG1000|consen 245 LIVCPA-SVRFTWAKALNRFLPSIHP---IFVV--DKSSDP---LPDVCTSNTVAIVSYEQLSLL-HDI-----LKKEKY 309 (689)
T ss_pred EEEecH-HHhHHHHHHHHHhcccccc---eEEE--ecccCC---ccccccCCeEEEEEHHHHHHH-HHH-----Hhcccc
Confidence 999995 5667788888888876642 3333 333221 011122356777777665332 211 333458
Q ss_pred eEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecC----h---------------hHHHHHHHhcCCC---eEE
Q 007402 183 KILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSS----S---------------DVDKLKKLILHNP---YIL 240 (605)
Q Consensus 183 ~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~----~---------------~v~~l~~~~l~~p---~~i 240 (605)
.++|+||+|.+-+.. ....+.+...+.....+||+|.|+. . +..++...||... ...
T Consensus 310 ~vvI~DEsH~Lk~sk-tkr~Ka~~dllk~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~ 388 (689)
T KOG1000|consen 310 RVVIFDESHMLKDSK-TKRTKAATDLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCF 388 (689)
T ss_pred eEEEEechhhhhccc-hhhhhhhhhHHHHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceee
Confidence 999999999876653 3346666666666678999999963 1 1122233333221 111
Q ss_pred EcCCccCccc-------------------cccCCCcEEEEEEccccc-----------------------hH--HHHHH-
Q 007402 241 TLPEVGDVKD-------------------EVIPKNVQQFWISCSERD-----------------------KL--LYILT- 275 (605)
Q Consensus 241 ~l~~~~~~~~-------------------~~~~~~l~q~~~~~~~~~-----------------------k~--~~l~~- 275 (605)
.........+ ...+..-.+.++.+.... +. .+.|.
T Consensus 389 Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qLPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~ 468 (689)
T KOG1000|consen 389 DYKGCTNLEELAALLFKRLMIRRLKADVLKQLPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSL 468 (689)
T ss_pred ecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHH
Confidence 1111000000 111222223333332110 00 11111
Q ss_pred ------------HHH----hhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCC-CcEEE
Q 007402 276 ------------LLK----LELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGL-FDYLI 338 (605)
Q Consensus 276 ------------llk----~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~-~~iLI 338 (605)
++. ......|.+||+........+..++...++...-+.|..|..+|....+.|+..+ +.|-|
T Consensus 469 tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAv 548 (689)
T KOG1000|consen 469 TGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAV 548 (689)
T ss_pred hcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEE
Confidence 111 1123459999999999999999999999999999999999999999999998754 33333
Q ss_pred EcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCccEE-
Q 007402 339 ATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASV- 417 (605)
Q Consensus 339 aTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai- 417 (605)
-+=.+ -| -|++|...++|++..+|+++.-.+|.=-|+.|.|++..+.
T Consensus 549 lsItA------------------------------~g--vGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v 596 (689)
T KOG1000|consen 549 LSITA------------------------------AG--VGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFV 596 (689)
T ss_pred EEEee------------------------------cc--cceeeeccceEEEEEecCCCceEEechhhhhhccccceeeE
Confidence 22221 22 3999999999999999999999999999999999966543
Q ss_pred -EEeCC--chhhHHHHHHHHHhhh
Q 007402 418 -SLVSP--DEMKIFEEIKSFVGDD 438 (605)
Q Consensus 418 -~~v~~--~e~~~~~~~~~~l~~~ 438 (605)
.|+.. -|...+..+.+.|..+
T Consensus 597 ~ylvAKgT~Ddy~Wp~l~~KL~vl 620 (689)
T KOG1000|consen 597 QYLVAKGTADDYMWPMLQQKLDVL 620 (689)
T ss_pred EEEEecCchHHHHHHHHHHHHHHH
Confidence 33332 2333444444444443
No 148
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.47 E-value=5.2e-11 Score=136.38 Aligned_cols=65 Identities=31% Similarity=0.329 Sum_probs=52.0
Q ss_pred CCCCChHHHHHHHH---HHhCC------CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHH
Q 007402 45 GIQKPTLIQQASIP---LILEG------KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQV 115 (605)
Q Consensus 45 g~~~pt~iQ~~aIp---~~l~g------kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv 115 (605)
|| .+++-|.+.+. .++.+ +.+++.|+||+|||+||++|++-.... .+.+++|-+.|+.|-+|+
T Consensus 23 ~~-e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~-------~~k~vVIST~T~~LQeQL 94 (697)
T PRK11747 23 GF-IPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARA-------EKKKLVISTATVALQEQL 94 (697)
T ss_pred CC-CcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHH-------cCCeEEEEcCCHHHHHHH
Confidence 66 68999998554 44444 568999999999999999999865443 256799999999999998
Q ss_pred HH
Q 007402 116 YS 117 (605)
Q Consensus 116 ~~ 117 (605)
..
T Consensus 95 ~~ 96 (697)
T PRK11747 95 VS 96 (697)
T ss_pred Hh
Confidence 63
No 149
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.47 E-value=1.6e-13 Score=112.64 Aligned_cols=81 Identities=44% Similarity=0.715 Sum_probs=76.2
Q ss_pred HHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccc
Q 007402 298 RLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVV 377 (605)
Q Consensus 298 ~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~ 377 (605)
.++..|...++.+..+||.++...|..+++.|+.|...+||+|+..+
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~--------------------------------- 48 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAE--------------------------------- 48 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhh---------------------------------
Confidence 46777888899999999999999999999999999999999999865
Q ss_pred cccccCCccEEEEeCCCCCchhHHHhhcccccCC
Q 007402 378 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAY 411 (605)
Q Consensus 378 rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g 411 (605)
+|+|++++++||.+++|++...|+|++||++|.|
T Consensus 49 ~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 49 RGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRAG 82 (82)
T ss_pred CCcChhcCCEEEEeCCCCCHHHHHHhhcccccCC
Confidence 7999999999999999999999999999999976
No 150
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.41 E-value=5e-12 Score=144.10 Aligned_cols=329 Identities=20% Similarity=0.161 Sum_probs=185.2
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHhC--------CCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcH
Q 007402 38 VHALNKKGIQKPTLIQQASIPLILE--------GKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTR 109 (605)
Q Consensus 38 ~~al~~~g~~~pt~iQ~~aIp~~l~--------gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtr 109 (605)
.+.+...--.....+|-+|+..+.. |--+|--|.||||||+|=.- |+..+-. ...+.|..|-.-.|
T Consensus 398 hk~~~~r~~~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNAR-ImyaLsd-----~~~g~RfsiALGLR 471 (1110)
T TIGR02562 398 HKYFCQRSAHPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANAR-AMYALRD-----DKQGARFAIALGLR 471 (1110)
T ss_pred hhhhccCCCCCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHH-HHHHhCC-----CCCCceEEEEcccc
Confidence 3444333333446799999988765 23477889999999996432 2222222 24577888888888
Q ss_pred HHHHHHHHHHHHHHHHhcCCcceE-----------------------------------------EEEEeCCCCHHHHHH
Q 007402 110 ELCQQVYSEVMALIELCKGQVQLK-----------------------------------------VVQLTSSMPASDLRA 148 (605)
Q Consensus 110 eLa~Qv~~~~~~l~~~~~~~~~i~-----------------------------------------v~~l~~~~~~~~~~~ 148 (605)
.|..|+-+.+++-+..-.+ ++- .+.+.|.........
T Consensus 472 TLTLQTGda~r~rL~L~~d--dLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~ 549 (1110)
T TIGR02562 472 SLTLQTGHALKTRLNLSDD--DLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLG 549 (1110)
T ss_pred ceeccchHHHHHhcCCCcc--ceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhh
Confidence 8888888777664432211 110 112222221111111
Q ss_pred HHcC--------CCcEEEECCchHHHHHh--cCCCCCcccC--CCceEEEEeCcchhccCCcHHHHHHHHhhCC-CCceE
Q 007402 149 ALAG--------PPDIVIATPGCMPKCLS--TGVLQSKSFS--DSLKILVLDEADLLLSYGYEDDLKALSAVIP-RGCQC 215 (605)
Q Consensus 149 ~l~~--------~~dIvV~TP~~l~~~l~--~~~~~~~~~l--~~l~~lViDEad~i~~~g~~~~l~~i~~~lp-~~~q~ 215 (605)
.+.. ..+|+|||++.++.... .+.... ..+ -.-+.|||||+|.+-.+.+ ..+..++..+. -+..+
T Consensus 550 ~l~~~~k~~rll~apv~V~TIDQlL~a~~~~r~~~~~-l~ll~La~svlVlDEVHaYD~~~~-~~L~rlL~w~~~lG~~V 627 (1110)
T TIGR02562 550 RLSLDDKEKTLLAAPVLVCTIDHLIPATESHRGGHHI-APMLRLMSSDLILDEPDDYEPEDL-PALLRLVQLAGLLGSRV 627 (1110)
T ss_pred hhccChhhhhhhcCCeEEecHHHHHHHhhhcccchhH-HHHHHhcCCCEEEECCccCCHHHH-HHHHHHHHHHHHcCCCE
Confidence 1111 24799999999887662 211100 111 1125799999998544422 22333333221 26789
Q ss_pred EEEeeecChhHH-HHHHHh----------cCC---CeEEE---cCCccCccc-----------------------cccCC
Q 007402 216 LLMSATSSSDVD-KLKKLI----------LHN---PYILT---LPEVGDVKD-----------------------EVIPK 255 (605)
Q Consensus 216 il~SATl~~~v~-~l~~~~----------l~~---p~~i~---l~~~~~~~~-----------------------~~~~~ 255 (605)
++||||+|+.+. .|...| ... |..|. +++...... ...+.
T Consensus 628 lLmSATLP~~l~~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~ 707 (1110)
T TIGR02562 628 LLSSATLPPALVKTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPV 707 (1110)
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 999999998873 333333 221 22221 111000000 00000
Q ss_pred CcEEEEEEcccc-----chHHHHH-----HHHHhhc-------CCCe----EEEEecchhHHHHHHHHHHHc------CC
Q 007402 256 NVQQFWISCSER-----DKLLYIL-----TLLKLEL-------VQKK----ALIFTNTIDMAFRLKLFLEKF------GI 308 (605)
Q Consensus 256 ~l~q~~~~~~~~-----~k~~~l~-----~llk~~~-------~~~k----~IIFv~s~~~~~~L~~~L~~~------gi 308 (605)
.-.-..+.++.. .....+. .++.++. ..+| .+|-+++++.|..++..|-.. .+
T Consensus 708 ~R~a~i~~~~~~~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i 787 (1110)
T TIGR02562 708 RRLAELLSLSSLPRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQI 787 (1110)
T ss_pred cceEEEeecCCcccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCce
Confidence 001122333322 1111111 2222221 1222 478899999999988888654 35
Q ss_pred cEEEEcCCCCHHHHHHHHHHH-----------------------H---cCCCcEEEEcCCCCcccccccCCCCCcccccc
Q 007402 309 KSAILNAELPQNSRLHILEEF-----------------------N---AGLFDYLIATDDTQTKEKDQSDEGGHVDSRKS 362 (605)
Q Consensus 309 ~~~~l~~~l~~~~R~~i~~~F-----------------------~---~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~ 362 (605)
..|++||..+...|.++.+.. + .+...|+|||++.|
T Consensus 788 ~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E------------------ 849 (1110)
T TIGR02562 788 HLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEE------------------ 849 (1110)
T ss_pred eEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEE------------------
Confidence 689999999999998877663 1 24678999999987
Q ss_pred cCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCC
Q 007402 363 KKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYN 412 (605)
Q Consensus 363 ~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~ 412 (605)
-|+|+ +.+++ |--|.+..+.|||+||+.|.|.
T Consensus 850 ---------------~g~D~-dfd~~--~~~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 850 ---------------VGRDH-DYDWA--IADPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred ---------------EEecc-cCCee--eeccCcHHHHHHHhhccccccc
Confidence 38777 23433 3457789999999999999776
No 151
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.39 E-value=3.1e-11 Score=135.40 Aligned_cols=323 Identities=21% Similarity=0.212 Sum_probs=202.5
Q ss_pred CCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHH
Q 007402 44 KGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALI 123 (605)
Q Consensus 44 ~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~ 123 (605)
+|. .|..+|...--.+..| -++.+.||-|||++..+|+.-..|. |..+.++...--||.--++++..++
T Consensus 77 lg~-~~~dVQliG~i~lh~g--~iaEM~TGEGKTL~atlp~ylnaL~--------gkgVhvVTvNdYLA~RDae~m~~l~ 145 (822)
T COG0653 77 LGM-RHFDVQLLGGIVLHLG--DIAEMRTGEGKTLVATLPAYLNALA--------GKGVHVVTVNDYLARRDAEWMGPLY 145 (822)
T ss_pred cCC-ChhhHHHhhhhhhcCC--ceeeeecCCchHHHHHHHHHHHhcC--------CCCcEEeeehHHhhhhCHHHHHHHH
Confidence 465 5677887666555444 5999999999999999999877666 4458888888999999999999999
Q ss_pred HHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchH-HHHHhcCCCC--CcccCCCceEEEEeCcchhc------
Q 007402 124 ELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCM-PKCLSTGVLQ--SKSFSDSLKILVLDEADLLL------ 194 (605)
Q Consensus 124 ~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l-~~~l~~~~~~--~~~~l~~l~~lViDEad~i~------ 194 (605)
.++ ++++.....+++....+... .+||..+|...+ .+++..+... ....+..+.+.|+||+|-|+
T Consensus 146 ~~L----GlsvG~~~~~m~~~ek~~aY--~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARt 219 (822)
T COG0653 146 EFL----GLSVGVILAGMSPEEKRAAY--ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEART 219 (822)
T ss_pred HHc----CCceeeccCCCChHHHHHHH--hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeecccc
Confidence 988 78888888888877766655 589999998765 3333332211 12445578899999999765
Q ss_pred ----cC---C---cHHHHHHHHhhCCCC---------ceEEE--------------------------------------
Q 007402 195 ----SY---G---YEDDLKALSAVIPRG---------CQCLL-------------------------------------- 217 (605)
Q Consensus 195 ----~~---g---~~~~l~~i~~~lp~~---------~q~il-------------------------------------- 217 (605)
+. + ....+..+...+... .++.+
T Consensus 220 PLiISG~~~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l 299 (822)
T COG0653 220 PLIISGPAEDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHIL 299 (822)
T ss_pred ceeeecccccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHH
Confidence 22 1 123333333332211 11111
Q ss_pred ----------------------------------------------------------------------EeeecChhHH
Q 007402 218 ----------------------------------------------------------------------MSATSSSDVD 227 (605)
Q Consensus 218 ----------------------------------------------------------------------~SATl~~~v~ 227 (605)
||.|...+..
T Consensus 300 ~~~D~dYIVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~ 379 (822)
T COG0653 300 FFRDVDYIVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEE 379 (822)
T ss_pred hhcCCeeEEecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhh
Confidence 1111111111
Q ss_pred HHHHHhcCCCeEEEcCCccCccccccCCCcEEEEEEccccchHHHHHHH-HHhhcCCCeEEEEecchhHHHHHHHHHHHc
Q 007402 228 KLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTL-LKLELVQKKALIFTNTIDMAFRLKLFLEKF 306 (605)
Q Consensus 228 ~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~~~~~k~~~l~~l-lk~~~~~~k~IIFv~s~~~~~~L~~~L~~~ 306 (605)
++...|.-+-+++.... ........ -.+......|+..+... ......+.|+||-+.+++.++.+...|.+.
T Consensus 380 EF~~iY~l~vv~iPTnr------p~~R~D~~-D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~ 452 (822)
T COG0653 380 EFDVIYGLDVVVIPTNR------PIIRLDEP-DLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKA 452 (822)
T ss_pred hhhhccCCceeeccCCC------cccCCCCc-cccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhc
Confidence 11111110000000000 00000000 11223345566655544 445556779999999999999999999999
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCcc
Q 007402 307 GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 386 (605)
Q Consensus 307 gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~ 386 (605)
||+..+||+.-...+-..+.+.-..| -|-|||+++. ||-|+.--.
T Consensus 453 ~i~h~VLNAk~h~~EA~Iia~AG~~g--aVTiATNMAG---------------------------------RGTDIkLg~ 497 (822)
T COG0653 453 GIPHNVLNAKNHAREAEIIAQAGQPG--AVTIATNMAG---------------------------------RGTDIKLGG 497 (822)
T ss_pred CCCceeeccccHHHHHHHHhhcCCCC--cccccccccc---------------------------------CCcccccCC
Confidence 99999999988765555444444444 4778999987 788886332
Q ss_pred -----------EEEEeCCCCCchhHHHhhcccccCCCCccEEEEeCCchh
Q 007402 387 -----------TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM 425 (605)
Q Consensus 387 -----------~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~~v~~~e~ 425 (605)
+||--.--.|-.---|--||+||.|.+|.+..|++-++.
T Consensus 498 ~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSleD~ 547 (822)
T COG0653 498 NPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDD 547 (822)
T ss_pred CHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhhHHH
Confidence 233333222322223777999999999999999987654
No 152
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.37 E-value=1.3e-10 Score=133.41 Aligned_cols=72 Identities=29% Similarity=0.386 Sum_probs=58.2
Q ss_pred HCCCCCChHHHHHHHHHH---hC-CCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHH
Q 007402 43 KKGIQKPTLIQQASIPLI---LE-GKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSE 118 (605)
Q Consensus 43 ~~g~~~pt~iQ~~aIp~~---l~-gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~ 118 (605)
.+....|++.|.+++..+ +. |+.+++.||||+|||++|++|++...... +..++|.++|+.|-.|+.+.
T Consensus 10 ~~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~-------~~~viist~t~~lq~q~~~~ 82 (654)
T COG1199 10 AFPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREE-------GKKVIISTRTKALQEQLLEE 82 (654)
T ss_pred hCCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHc-------CCcEEEECCCHHHHHHHHHh
Confidence 345568999999988543 33 45599999999999999999999876553 36699999999999999877
Q ss_pred HHH
Q 007402 119 VMA 121 (605)
Q Consensus 119 ~~~ 121 (605)
...
T Consensus 83 ~~~ 85 (654)
T COG1199 83 DLP 85 (654)
T ss_pred hcc
Confidence 554
No 153
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.36 E-value=2.5e-11 Score=137.65 Aligned_cols=308 Identities=19% Similarity=0.258 Sum_probs=203.0
Q ss_pred ChHHHHHHHHHHhCC-CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHHhc
Q 007402 49 PTLIQQASIPLILEG-KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCK 127 (605)
Q Consensus 49 pt~iQ~~aIp~~l~g-kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~ 127 (605)
..|+|.++++.+-+. .++++.||+|||||+++-+.++. .....+++++.|.-+.+.-+++.+..-+...
T Consensus 1144 ~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~---------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~- 1213 (1674)
T KOG0951|consen 1144 FNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR---------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKL- 1213 (1674)
T ss_pred cCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC---------CccceEEEEecchHHHHHHHHHHHHHhhccc-
Confidence 388999999887665 56999999999999988777664 1346789999999999988888776654433
Q ss_pred CCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCC---cH--HHH
Q 007402 128 GQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYG---YE--DDL 202 (605)
Q Consensus 128 ~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g---~~--~~l 202 (605)
.+.+++.++|..+.. ..+....+|+|+||+++-.+ . ....+++.|.||+|++.+.. |+ -.+
T Consensus 1214 --~G~~~~~l~ge~s~~---lkl~~~~~vii~tpe~~d~l-q--------~iQ~v~l~i~d~lh~igg~~g~v~evi~S~ 1279 (1674)
T KOG0951|consen 1214 --LGLRIVKLTGETSLD---LKLLQKGQVIISTPEQWDLL-Q--------SIQQVDLFIVDELHLIGGVYGAVYEVICSM 1279 (1674)
T ss_pred --cCceEEecCCccccc---hHHhhhcceEEechhHHHHH-h--------hhhhcceEeeehhhhhcccCCceEEEEeeH
Confidence 278899998887643 23445679999999997443 2 23568899999999987432 11 116
Q ss_pred HHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEEEEEccccchHH-----HHH-HH
Q 007402 203 KALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLL-----YIL-TL 276 (605)
Q Consensus 203 ~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~~~~~k~~-----~l~-~l 276 (605)
..|...+.+...++.+|..+.+.-+ + .++....++.+... ..+.+-.+....+.....+... ..| ++
T Consensus 1280 r~ia~q~~k~ir~v~ls~~lana~d-~--ig~s~~~v~Nf~p~----~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai 1352 (1674)
T KOG0951|consen 1280 RYIASQLEKKIRVVALSSSLANARD-L--IGASSSGVFNFSPS----VRPVPLEIHIQSVDISHFESRMLAMTKPTYTAI 1352 (1674)
T ss_pred HHHHHHHHhheeEEEeehhhccchh-h--ccccccceeecCcc----cCCCceeEEEEEeccchhHHHHHHhhhhHHHHH
Confidence 6777777788889998887765322 2 33433344443331 1122222222223233222221 122 22
Q ss_pred HHhhcCCCeEEEEecchhHHHHHHHHHHHc----------------------CCcEEEEcCCCCHHHHHHHHHHHHcCCC
Q 007402 277 LKLELVQKKALIFTNTIDMAFRLKLFLEKF----------------------GIKSAILNAELPQNSRLHILEEFNAGLF 334 (605)
Q Consensus 277 lk~~~~~~k~IIFv~s~~~~~~L~~~L~~~----------------------gi~~~~l~~~l~~~~R~~i~~~F~~g~~ 334 (605)
......+.+++||++++..|..++.-|-.+ ..+..+=|-+|+.+...-+-.-|..|.+
T Consensus 1353 ~~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i 1432 (1674)
T KOG0951|consen 1353 VRHAGNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAI 1432 (1674)
T ss_pred HHHhcCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcE
Confidence 333345779999999999887765544222 2223333888999988888888999999
Q ss_pred cEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEE-----EeCC------CCCchhHHHh
Q 007402 335 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVI-----NFEM------PQNAAGYVHR 403 (605)
Q Consensus 335 ~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI-----~fd~------P~s~~~yiqR 403 (605)
.|+|.+.. . .|+-... +.|| .||. +-++....|+
T Consensus 1433 ~v~v~s~~-~---------------------------------~~~~~~~-~lVvvmgt~~ydg~e~~~~~y~i~~ll~m 1477 (1674)
T KOG0951|consen 1433 QVCVMSRD-C---------------------------------YGTKLKA-HLVVVMGTQYYDGKEHSYEDYPIAELLQM 1477 (1674)
T ss_pred EEEEEEcc-c---------------------------------ccccccc-eEEEEecceeecccccccccCchhHHHHH
Confidence 99998754 2 2444432 2333 2332 4457889999
Q ss_pred hcccccCCCCccEEEEeCCchh
Q 007402 404 IGRTGRAYNTGASVSLVSPDEM 425 (605)
Q Consensus 404 iGRtgR~g~~G~ai~~v~~~e~ 425 (605)
+|++.|+ |.|+.+......
T Consensus 1478 ~G~a~~~---~k~vi~~~~~~k 1496 (1674)
T KOG0951|consen 1478 VGLASGA---GKCVIMCHTPKK 1496 (1674)
T ss_pred hhhhcCC---ccEEEEecCchH
Confidence 9999994 678888876554
No 154
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.30 E-value=1.7e-09 Score=124.63 Aligned_cols=75 Identities=17% Similarity=0.147 Sum_probs=60.4
Q ss_pred CCCCCChHHHHHHHHHH----hCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHH
Q 007402 44 KGIQKPTLIQQASIPLI----LEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEV 119 (605)
Q Consensus 44 ~g~~~pt~iQ~~aIp~~----l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~ 119 (605)
+-|..++|.|.+.+..+ .+|+++++.||||+|||++.+-|++..+... ....++++.+.|..=..|+.+++
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~-----~~~~kIiy~sRThsQl~q~i~El 80 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEK-----PEVRKIIYASRTHSQLEQATEEL 80 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhc-----cccccEEEEcccchHHHHHHHHH
Confidence 45777799998877544 4578999999999999999999999876542 12367999999998888888888
Q ss_pred HHHH
Q 007402 120 MALI 123 (605)
Q Consensus 120 ~~l~ 123 (605)
+.+.
T Consensus 81 k~~~ 84 (705)
T TIGR00604 81 RKLM 84 (705)
T ss_pred Hhhh
Confidence 8753
No 155
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.24 E-value=3.4e-10 Score=122.34 Aligned_cols=104 Identities=17% Similarity=0.190 Sum_probs=87.4
Q ss_pred CCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHc--CCCcEEEEcCCCCcccccccCCCCCccc
Q 007402 282 VQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA--GLFDYLIATDDTQTKEKDQSDEGGHVDS 359 (605)
Q Consensus 282 ~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~--g~~~iLIaTd~~~~~~~~~~~~~~~~~~ 359 (605)
.+.+++|.......-.-+...|.++|.....+||..+...|..+++.||. |..+|++-+=.+
T Consensus 745 skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtA---------------- 808 (901)
T KOG4439|consen 745 SKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTA---------------- 808 (901)
T ss_pred ccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEcc----------------
Confidence 35678887777777777888999999999999999999999999999986 556776655332
Q ss_pred ccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCccEE
Q 007402 360 RKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASV 417 (605)
Q Consensus 360 ~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai 417 (605)
.|| |+++-..+++|..|+-|++.---|..-|.-|.|++..++
T Consensus 809 --------------GGV--GLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~ 850 (901)
T KOG4439|consen 809 --------------GGV--GLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVF 850 (901)
T ss_pred --------------Ccc--eeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceE
Confidence 344 999999999999999999999999999999999976553
No 156
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.21 E-value=4.9e-10 Score=117.70 Aligned_cols=348 Identities=17% Similarity=0.202 Sum_probs=224.0
Q ss_pred CCCChHHHHHHHHHHhCCCcEEEEcCC-CchH--HHHHHHHHHHHHhhcCC-------C---------C-------CCCC
Q 007402 46 IQKPTLIQQASIPLILEGKDVVARAKT-GSGK--TFAYLLPLLHRLFNESS-------P---------K-------SKLA 99 (605)
Q Consensus 46 ~~~pt~iQ~~aIp~~l~gkdvlv~a~T-GsGK--T~a~~lpil~~ll~~~~-------~---------~-------~~~~ 99 (605)
-..+|+.|.+.+..+.+-+|++.--.| +.|+ +-.|++-+++.+++... . . +-..
T Consensus 214 s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tR 293 (698)
T KOG2340|consen 214 SEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTR 293 (698)
T ss_pred cCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCC
Confidence 356799999999999999999864333 3444 55789999988886311 0 0 1235
Q ss_pred CeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcce------EEEE----------------------EeCCCCHHH------
Q 007402 100 PAALVLVPTRELCQQVYSEVMALIELCKGQVQL------KVVQ----------------------LTSSMPASD------ 145 (605)
Q Consensus 100 ~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i------~v~~----------------------l~~~~~~~~------ 145 (605)
+++||+||+||-|..+...+..++...... .. ++.. +.|+++..-
T Consensus 294 pkVLivvpfRe~A~riVn~lis~l~G~~q~-k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~f 372 (698)
T KOG2340|consen 294 PKVLIVVPFRESAYRIVNLLISLLSGDDQG-KSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAF 372 (698)
T ss_pred ceEEEEecchHHHHHHHHHHHHHhcCcccc-chhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHH
Confidence 789999999999999998888775432210 00 0000 112222110
Q ss_pred ---HHHHHc--CCCcEEEECCchHHHHHhcCC--CCCcccCCCceEEEEeCcchhccCCcHHHHHHHHhhC---CCC---
Q 007402 146 ---LRAALA--GPPDIVIATPGCMPKCLSTGV--LQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVI---PRG--- 212 (605)
Q Consensus 146 ---~~~~l~--~~~dIvV~TP~~l~~~l~~~~--~~~~~~l~~l~~lViDEad~i~~~g~~~~l~~i~~~l---p~~--- 212 (605)
-..+.+ ...||+||.|=-|.-.+.+.. -.....++++.++|||-||.|+-.+|+ .+..|+.++ |..
T Consensus 373 tkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwE-hl~~ifdHLn~~P~k~h~ 451 (698)
T KOG2340|consen 373 TKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWE-HLLHIFDHLNLQPSKQHD 451 (698)
T ss_pred HHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHH-HHHHHHHHhhcCcccccC
Confidence 011111 567999999988877776321 122466899999999999999866544 344454443 421
Q ss_pred ------------------ceEEEEeeecChhHHHHHHHhcCCCeEEEcCC-c-cCccccccCCCcEEEEEE--cc-----
Q 007402 213 ------------------CQCLLMSATSSSDVDKLKKLILHNPYILTLPE-V-GDVKDEVIPKNVQQFWIS--CS----- 265 (605)
Q Consensus 213 ------------------~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~-~-~~~~~~~~~~~l~q~~~~--~~----- 265 (605)
+|+++||+--.+....+...+|.|-.-..... . ....-....-.+.|.+.. |.
T Consensus 452 ~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~ 531 (698)
T KOG2340|consen 452 VDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIET 531 (698)
T ss_pred CChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccC
Confidence 49999999999998888888887643221111 0 000001111223333322 21
Q ss_pred ccchHHHHHHHHHhhc---CCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 007402 266 ERDKLLYILTLLKLEL---VQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 342 (605)
Q Consensus 266 ~~~k~~~l~~llk~~~---~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~ 342 (605)
...+|.+...-+--.+ ...-|||++++--.-.++..++...++....+|-..+...-.++-+-|-.|...||+-|.-
T Consensus 532 ~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER 611 (698)
T KOG2340|consen 532 PDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTER 611 (698)
T ss_pred chHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehh
Confidence 2334443332221111 1346899999999999999999998888777777766666666778899999999999976
Q ss_pred CCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHH---HhhcccccCCC----Ccc
Q 007402 343 TQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYV---HRIGRTGRAYN----TGA 415 (605)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yi---qRiGRtgR~g~----~G~ 415 (605)
+- ..|-.+|.+|..||.|.+|..|.-|. ...+|+.-.|+ .-.
T Consensus 612 ~h-------------------------------ffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t 660 (698)
T KOG2340|consen 612 AH-------------------------------FFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFT 660 (698)
T ss_pred hh-------------------------------hhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceE
Confidence 54 45789999999999999999987664 55566654443 235
Q ss_pred EEEEeCCchhh
Q 007402 416 SVSLVSPDEMK 426 (605)
Q Consensus 416 ai~~v~~~e~~ 426 (605)
|.++++..|.-
T Consensus 661 ~~ilytKyD~i 671 (698)
T KOG2340|consen 661 VRILYTKYDRI 671 (698)
T ss_pred EEEEeechhhH
Confidence 66677765553
No 157
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.15 E-value=2.5e-09 Score=119.57 Aligned_cols=288 Identities=19% Similarity=0.233 Sum_probs=170.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcce-EEEEEeCCCCH
Q 007402 65 DVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQL-KVVQLTSSMPA 143 (605)
Q Consensus 65 dvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i-~v~~l~~~~~~ 143 (605)
=.+++||.|||||.+..-+ ++..+. .+..++|++.-.+.|+.+.+..++... + .+..+....+.
T Consensus 51 V~vVRSpMGTGKTtaLi~w-Lk~~l~------~~~~~VLvVShRrSL~~sL~~rf~~~~--------l~gFv~Y~d~~~~ 115 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTALIRW-LKDALK------NPDKSVLVVSHRRSLTKSLAERFKKAG--------LSGFVNYLDSDDY 115 (824)
T ss_pred eEEEECCCCCCcHHHHHHH-HHHhcc------CCCCeEEEEEhHHHHHHHHHHHHhhcC--------CCcceeeeccccc
Confidence 3689999999999875444 433332 236779999999999999999887531 1 11111111110
Q ss_pred HHHHHHHc-CCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCcHHHH-------HHHHhhCCCCceE
Q 007402 144 SDLRAALA-GPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL-------KALSAVIPRGCQC 215 (605)
Q Consensus 144 ~~~~~~l~-~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~~~l-------~~i~~~lp~~~q~ 215 (605)
.+. ...+-+++..+.|..... ..+.+.++|||||+..++..=|.+.+ ..+...+.....+
T Consensus 116 -----~i~~~~~~rLivqIdSL~R~~~-------~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~V 183 (824)
T PF02399_consen 116 -----IIDGRPYDRLIVQIDSLHRLDG-------SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTV 183 (824)
T ss_pred -----cccccccCeEEEEehhhhhccc-------ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeE
Confidence 111 135677777777754321 34667899999999887654333222 2233344556679
Q ss_pred EEEeeecChhHHHHHHHhcCC-CeEEEcCCccC--c--------------------c--cc-----c----cCCCcEEEE
Q 007402 216 LLMSATSSSDVDKLKKLILHN-PYILTLPEVGD--V--------------------K--DE-----V----IPKNVQQFW 261 (605)
Q Consensus 216 il~SATl~~~v~~l~~~~l~~-p~~i~l~~~~~--~--------------------~--~~-----~----~~~~l~q~~ 261 (605)
|+|-||+++..-++...+..+ ++.+.+.+... . . ++ . .........
T Consensus 184 I~~DA~ln~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (824)
T PF02399_consen 184 IVMDADLNDQTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAA 263 (824)
T ss_pred EEecCCCCHHHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccc
Confidence 999999999887776665433 22222222000 0 0 00 0 000111111
Q ss_pred EEccccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcC
Q 007402 262 ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 341 (605)
Q Consensus 262 ~~~~~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd 341 (605)
+..++..-+..|..-+. .+.++-||+.|...+..++.+...++..+.+++|.-+..+ + +. =+.++|+|=|.
T Consensus 264 ~~~~~~tF~~~L~~~L~---~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d---v-~~--W~~~~VviYT~ 334 (824)
T PF02399_consen 264 ISNDETTFFSELLARLN---AGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED---V-ES--WKKYDVVIYTP 334 (824)
T ss_pred cccchhhHHHHHHHHHh---CCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc---c-cc--ccceeEEEEec
Confidence 11222222222222222 2456678999999999999999999999999999877662 2 22 36799999999
Q ss_pred CCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccE--EEEeCCC----CCchhHHHhhcccccCCCCcc
Q 007402 342 DTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT--VINFEMP----QNAAGYVHRIGRTGRAYNTGA 415 (605)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~--VI~fd~P----~s~~~yiqRiGRtgR~g~~G~ 415 (605)
+.. -|++|....+ |.-|=-| .+..+..|.+||.-.-.. ..
T Consensus 335 ~it---------------------------------vG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~~-~e 380 (824)
T PF02399_consen 335 VIT---------------------------------VGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLLD-NE 380 (824)
T ss_pred eEE---------------------------------EEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhcc-Ce
Confidence 865 4999975432 3323113 245568999999954433 33
Q ss_pred EEEEeCC
Q 007402 416 SVSLVSP 422 (605)
Q Consensus 416 ai~~v~~ 422 (605)
.++.+..
T Consensus 381 i~v~~d~ 387 (824)
T PF02399_consen 381 IYVYIDA 387 (824)
T ss_pred EEEEEec
Confidence 4444433
No 158
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.13 E-value=1.5e-09 Score=121.54 Aligned_cols=321 Identities=19% Similarity=0.216 Sum_probs=196.1
Q ss_pred CChHHHHHHHHHHhC---C-CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHH
Q 007402 48 KPTLIQQASIPLILE---G-KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALI 123 (605)
Q Consensus 48 ~pt~iQ~~aIp~~l~---g-kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~ 123 (605)
...+||...+.++.. + =+-|+...+|-|||.. .|.++.+++..+. -.|| -||+||+..|... ..+|..+.
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQ-tIsLitYLmE~K~---~~GP-~LvivPlstL~NW-~~Ef~kWa 467 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQ-TISLITYLMEHKQ---MQGP-FLIIVPLSTLVNW-SSEFPKWA 467 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHH-HHHHHHHHHHHcc---cCCC-eEEeccccccCCc-hhhccccc
Confidence 678899999987663 2 2578889999999975 5666667776543 2244 7899999998874 44444443
Q ss_pred HHhcCCcceEEEEEeCCCCH--HHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccC--CCceEEEEeCcchhccC---
Q 007402 124 ELCKGQVQLKVVQLTSSMPA--SDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS--DSLKILVLDEADLLLSY--- 196 (605)
Q Consensus 124 ~~~~~~~~i~v~~l~~~~~~--~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l--~~l~~lViDEad~i~~~--- 196 (605)
. .+..+.+.|.-.. ..+.......++|+++|.+.+.. .. ..| -++.++||||.|+|-..
T Consensus 468 P------Sv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik----dk----~lLsKI~W~yMIIDEGHRmKNa~~K 533 (1157)
T KOG0386|consen 468 P------SVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK----DK----ALLSKISWKYMIIDEGHRMKNAICK 533 (1157)
T ss_pred c------ceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC----CH----HHHhccCCcceeecccccccchhhH
Confidence 2 4666666664321 11223344789999999766643 11 223 34668999999987532
Q ss_pred -------CcH----------------HHHHHHHhhC-CC--------------CceEEE--EeeecChhH---HHHHHHh
Q 007402 197 -------GYE----------------DDLKALSAVI-PR--------------GCQCLL--MSATSSSDV---DKLKKLI 233 (605)
Q Consensus 197 -------g~~----------------~~l~~i~~~l-p~--------------~~q~il--~SATl~~~v---~~l~~~~ 233 (605)
.|. +.+..|+..+ |. ..+..+ +.+|-.+.+ ..|.+.+
T Consensus 534 Lt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVL 613 (1157)
T KOG0386|consen 534 LTDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVL 613 (1157)
T ss_pred HHHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhh
Confidence 122 1222222221 21 012222 111211100 0000000
Q ss_pred ---------------------------------------cCCCeEEEcCC-ccCc--c--------------ccc----c
Q 007402 234 ---------------------------------------LHNPYILTLPE-VGDV--K--------------DEV----I 253 (605)
Q Consensus 234 ---------------------------------------l~~p~~i~l~~-~~~~--~--------------~~~----~ 253 (605)
...+..+ ++. .+.. . ... .
T Consensus 614 RPFlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~-~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~v 692 (1157)
T KOG0386|consen 614 RPFLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLL-KDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANV 692 (1157)
T ss_pred hHHHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCC-cCchhccccchhhhhHhHHHHHhcCCchhhhhh
Confidence 0000000 000 0000 0 000 0
Q ss_pred CCCcEEEEEE---ccccchHHHHHHHH-HhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHH
Q 007402 254 PKNVQQFWIS---CSERDKLLYILTLL-KLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 329 (605)
Q Consensus 254 ~~~l~q~~~~---~~~~~k~~~l~~ll-k~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F 329 (605)
..++...+-. +-...|+.+|-.++ |+...+++++.||.......-+..+|.-.++...-+.|.....+|-..++.|
T Consensus 693 e~~~~~~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~F 772 (1157)
T KOG0386|consen 693 ENSYTLHYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIF 772 (1157)
T ss_pred ccccccccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHh
Confidence 0011111110 11234565555443 5666789999999999999999999998899999999999999999999999
Q ss_pred HcCCC---cEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcc
Q 007402 330 NAGLF---DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGR 406 (605)
Q Consensus 330 ~~g~~---~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGR 406 (605)
|.-.. ..|..|.... .|++++-++.||.||.-|++....|+--|
T Consensus 773 N~Pds~yf~Fllstragg---------------------------------lglNlQtadtviifdsdwnp~~d~qaqdr 819 (1157)
T KOG0386|consen 773 NAPDSPYFIFLLSTRAGG---------------------------------LGLNLQTADTVIIFDSDWNPHQDLQAQDR 819 (1157)
T ss_pred cCCCCceeeeeeeecccc---------------------------------cccchhhcceEEEecCCCCchhHHHHHHH
Confidence 98543 3455665443 49999999999999999999999999999
Q ss_pred cccCCCCccEEEEeCC
Q 007402 407 TGRAYNTGASVSLVSP 422 (605)
Q Consensus 407 tgR~g~~G~ai~~v~~ 422 (605)
+.|.|+.-.+-++...
T Consensus 820 ahrigq~~evRv~rl~ 835 (1157)
T KOG0386|consen 820 AHRIGQKKEVRVLRLI 835 (1157)
T ss_pred HHHhhchhheeeeeee
Confidence 9999998777665544
No 159
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.07 E-value=7.6e-09 Score=107.96 Aligned_cols=107 Identities=16% Similarity=0.142 Sum_probs=84.1
Q ss_pred eEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcC-CCcEEEEcCCCCcccccccCCCCCccccccc
Q 007402 285 KALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAG-LFDYLIATDDTQTKEKDQSDEGGHVDSRKSK 363 (605)
Q Consensus 285 k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g-~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~ 363 (605)
|.|||..-......+.--|.+.|+.|+-|-|+|+...|...++.|.+. .+.|++.+=.
T Consensus 640 KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLk--------------------- 698 (791)
T KOG1002|consen 640 KSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLK--------------------- 698 (791)
T ss_pred hhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEec---------------------
Confidence 667776666666666666667799999999999999999999999775 5666665532
Q ss_pred CCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCC--CccEEEEeCCc
Q 007402 364 KHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYN--TGASVSLVSPD 423 (605)
Q Consensus 364 ~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~--~G~ai~~v~~~ 423 (605)
+.|| -+++-..+.|+.+|+-|++.--.|.-.|..|.|+ +-.++.|+.+.
T Consensus 699 ---------AGGV--ALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEn 749 (791)
T KOG1002|consen 699 ---------AGGV--ALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIEN 749 (791)
T ss_pred ---------cCce--EeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhc
Confidence 3344 5788889999999999999988888888888887 55677888765
No 160
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=99.02 E-value=6.4e-09 Score=104.51 Aligned_cols=134 Identities=25% Similarity=0.344 Sum_probs=102.7
Q ss_pred CCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHH
Q 007402 44 KGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALI 123 (605)
Q Consensus 44 ~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~ 123 (605)
+|+ .|+++|-.++-.+..|+ |+...||-|||++..+|++-..+. |..+-|++.+..||..=++++..++
T Consensus 74 ~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~--------G~~V~vvT~NdyLA~RD~~~~~~~y 142 (266)
T PF07517_consen 74 LGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ--------GKGVHVVTSNDYLAKRDAEEMRPFY 142 (266)
T ss_dssp TS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT--------SS-EEEEESSHHHHHHHHHHHHHHH
T ss_pred cCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh--------cCCcEEEeccHHHhhccHHHHHHHH
Confidence 565 79999999997777777 999999999999999998877766 5669999999999999999999999
Q ss_pred HHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHH-HHHhcCCCCC--cccCCCceEEEEeCcchhc
Q 007402 124 ELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMP-KCLSTGVLQS--KSFSDSLKILVLDEADLLL 194 (605)
Q Consensus 124 ~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~-~~l~~~~~~~--~~~l~~l~~lViDEad~i~ 194 (605)
.++ ++++..+.++.+....+... .+||+++|...+. ++|+...... ......+.++||||||.++
T Consensus 143 ~~L----Glsv~~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 143 EFL----GLSVGIITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHT----T--EEEEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHh----hhccccCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 988 78999999988866555554 4689999998764 4555543222 1235789999999999876
No 161
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.97 E-value=5e-09 Score=107.70 Aligned_cols=76 Identities=22% Similarity=0.140 Sum_probs=59.4
Q ss_pred CCCCCChHHHHH----HHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHH
Q 007402 44 KGIQKPTLIQQA----SIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEV 119 (605)
Q Consensus 44 ~g~~~pt~iQ~~----aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~ 119 (605)
+.|. |+|.|.+ ++..+.+|+++++.||||+|||++|++|++..+...+.. ..+.+++|.++|..+..|....+
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~--~~~~kvi~~t~T~~~~~q~i~~l 81 (289)
T smart00488 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER--IQKIKLIYLSRTVSEIEKRLEEL 81 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc--ccccceeEEeccHHHHHHHHHHH
Confidence 3453 6999999 555666789999999999999999999999876653221 02347999999999999987777
Q ss_pred HHH
Q 007402 120 MAL 122 (605)
Q Consensus 120 ~~l 122 (605)
+++
T Consensus 82 ~~~ 84 (289)
T smart00488 82 RKL 84 (289)
T ss_pred Hhc
Confidence 654
No 162
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.97 E-value=5e-09 Score=107.70 Aligned_cols=76 Identities=22% Similarity=0.140 Sum_probs=59.4
Q ss_pred CCCCCChHHHHH----HHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHH
Q 007402 44 KGIQKPTLIQQA----SIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEV 119 (605)
Q Consensus 44 ~g~~~pt~iQ~~----aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~ 119 (605)
+.|. |+|.|.+ ++..+.+|+++++.||||+|||++|++|++..+...+.. ..+.+++|.++|..+..|....+
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~--~~~~kvi~~t~T~~~~~q~i~~l 81 (289)
T smart00489 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER--IQKIKLIYLSRTVSEIEKRLEEL 81 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc--ccccceeEEeccHHHHHHHHHHH
Confidence 3453 6999999 555666789999999999999999999999876653221 02347999999999999987777
Q ss_pred HHH
Q 007402 120 MAL 122 (605)
Q Consensus 120 ~~l 122 (605)
+++
T Consensus 82 ~~~ 84 (289)
T smart00489 82 RKL 84 (289)
T ss_pred Hhc
Confidence 654
No 163
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=98.96 E-value=1.1e-07 Score=102.99 Aligned_cols=104 Identities=18% Similarity=0.251 Sum_probs=91.2
Q ss_pred hhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCc-EEEEcCCCCcccccccCCCCCc
Q 007402 279 LELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFD-YLIATDDTQTKEKDQSDEGGHV 357 (605)
Q Consensus 279 ~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~-iLIaTd~~~~~~~~~~~~~~~~ 357 (605)
+...+.++|+|+........+..+|-..|+...-|.|......|..++..|....+- .|++|....
T Consensus 1040 LkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGG------------- 1106 (1185)
T KOG0388|consen 1040 LKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGG------------- 1106 (1185)
T ss_pred hhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCc-------------
Confidence 344567999999999999999999999999999999999999999999999986544 466665543
Q ss_pred ccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCcc
Q 007402 358 DSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGA 415 (605)
Q Consensus 358 ~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ 415 (605)
+ ||++...+.||+||-.|++..-.|...|+.|-|+.-.
T Consensus 1107 ------------------L--GINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrd 1144 (1185)
T KOG0388|consen 1107 ------------------L--GINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRD 1144 (1185)
T ss_pred ------------------c--cccccccceEEEecCCCCcchhhHHHHHHHhccCccc
Confidence 3 9999999999999999999999999999999998544
No 164
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=98.96 E-value=3.1e-08 Score=117.38 Aligned_cols=123 Identities=26% Similarity=0.302 Sum_probs=98.5
Q ss_pred chHHHHHHHH-H-hhcCCC--eEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcC-CCcEEEEcCC
Q 007402 268 DKLLYILTLL-K-LELVQK--KALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAG-LFDYLIATDD 342 (605)
Q Consensus 268 ~k~~~l~~ll-k-~~~~~~--k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g-~~~iLIaTd~ 342 (605)
.|...+..++ . ...... ++|||++......-+..+|+..++..+.++|.++.+.|..+++.|+++ ...|++.+--
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 4555555555 2 222234 899999999999999999999999999999999999999999999996 4555555532
Q ss_pred CCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCccE--EEEe
Q 007402 343 TQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGAS--VSLV 420 (605)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~a--i~~v 420 (605)
+ .| -|+++...+.||.||..+++....|...|+.|.|+...+ +.|+
T Consensus 772 a------------------------------gg--~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i 819 (866)
T COG0553 772 A------------------------------GG--LGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLI 819 (866)
T ss_pred c------------------------------cc--cceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEee
Confidence 2 22 499999999999999999999999999999999987654 4444
Q ss_pred CC
Q 007402 421 SP 422 (605)
Q Consensus 421 ~~ 422 (605)
+.
T Consensus 820 ~~ 821 (866)
T COG0553 820 TR 821 (866)
T ss_pred cC
Confidence 43
No 165
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.96 E-value=1.1e-09 Score=98.35 Aligned_cols=136 Identities=18% Similarity=0.261 Sum_probs=81.0
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCC
Q 007402 62 EGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSM 141 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~ 141 (605)
.|+-.++-.++|+|||--.+--++...+.. +.++|||.|||.++..+.+.++.. .+++.. .-.
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~-------~~rvLvL~PTRvva~em~~aL~~~--------~~~~~t--~~~ 65 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKR-------RLRVLVLAPTRVVAEEMYEALKGL--------PVRFHT--NAR 65 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHT-------T--EEEEESSHHHHHHHHHHTTTS--------SEEEES--TTS
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHc-------cCeEEEecccHHHHHHHHHHHhcC--------CcccCc--eee
Confidence 355578999999999987665566555442 678999999999999998887643 333321 111
Q ss_pred CHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCC--cHHHHHHHHhhCCCCceEEEEe
Q 007402 142 PASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYG--YEDDLKALSAVIPRGCQCLLMS 219 (605)
Q Consensus 142 ~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g--~~~~l~~i~~~lp~~~q~il~S 219 (605)
.. ....+--|-|.|.+.+...+.++ ....+++++|+||||..-... +...+...... ..+.+|+||
T Consensus 66 ~~-----~~~g~~~i~vMc~at~~~~~~~p-----~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~~--g~~~~i~mT 133 (148)
T PF07652_consen 66 MR-----THFGSSIIDVMCHATYGHFLLNP-----CRLKNYDVIIMDECHFTDPTSIAARGYLRELAES--GEAKVIFMT 133 (148)
T ss_dssp S---------SSSSEEEEEHHHHHHHHHTS-----SCTTS-SEEEECTTT--SHHHHHHHHHHHHHHHT--TS-EEEEEE
T ss_pred ec-----cccCCCcccccccHHHHHHhcCc-----ccccCccEEEEeccccCCHHHHhhheeHHHhhhc--cCeeEEEEe
Confidence 10 11234567788888887777654 456789999999999743221 22223333221 246799999
Q ss_pred eecChhH
Q 007402 220 ATSSSDV 226 (605)
Q Consensus 220 ATl~~~v 226 (605)
||+|-..
T Consensus 134 ATPPG~~ 140 (148)
T PF07652_consen 134 ATPPGSE 140 (148)
T ss_dssp SS-TT--
T ss_pred CCCCCCC
Confidence 9998554
No 166
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.92 E-value=2.9e-09 Score=109.79 Aligned_cols=160 Identities=21% Similarity=0.194 Sum_probs=90.6
Q ss_pred HHHHHHHHHh-------------CCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHH
Q 007402 52 IQQASIPLIL-------------EGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSE 118 (605)
Q Consensus 52 iQ~~aIp~~l-------------~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~ 118 (605)
+|..++..++ ..+.+|+...+|+|||...+..+. .+..... ......+||+||+ .+..||..+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~-~l~~~~~--~~~~~~~LIv~P~-~l~~~W~~E 76 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALIS-YLKNEFP--QRGEKKTLIVVPS-SLLSQWKEE 76 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHH-HHHHCCT--TSS-S-EEEEE-T-TTHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhh-hhhhccc--cccccceeEeecc-chhhhhhhh
Confidence 5777776653 336799999999999987655443 3433211 0112359999999 888899998
Q ss_pred HHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCc
Q 007402 119 VMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGY 198 (605)
Q Consensus 119 ~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~ 198 (605)
+..++.. . .+++..+.+...............+|+|+|++.+........ ...+..-++++||+||+|.+-+..
T Consensus 77 ~~~~~~~--~--~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~-~~~l~~~~~~~vIvDEaH~~k~~~- 150 (299)
T PF00176_consen 77 IEKWFDP--D--SLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKD-KEDLKQIKWDRVIVDEAHRLKNKD- 150 (299)
T ss_dssp HHHHSGT-----TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHT-THHHHTSEEEEEEETTGGGGTTTT-
T ss_pred hcccccc--c--cccccccccccccccccccccccceeeecccccccccccccc-ccccccccceeEEEeccccccccc-
Confidence 8877531 1 457777776651222222233568999999888871000000 001122348899999999985442
Q ss_pred HHHHHHHHhhCCCCceEEEEeeecC
Q 007402 199 EDDLKALSAVIPRGCQCLLMSATSS 223 (605)
Q Consensus 199 ~~~l~~i~~~lp~~~q~il~SATl~ 223 (605)
......+.. +. ....+++|||+-
T Consensus 151 s~~~~~l~~-l~-~~~~~lLSgTP~ 173 (299)
T PF00176_consen 151 SKRYKALRK-LR-ARYRWLLSGTPI 173 (299)
T ss_dssp SHHHHHHHC-CC-ECEEEEE-SS-S
T ss_pred ccccccccc-cc-cceEEeeccccc
Confidence 233333333 54 567889999963
No 167
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.70 E-value=2.7e-06 Score=100.65 Aligned_cols=140 Identities=19% Similarity=0.216 Sum_probs=97.1
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCH
Q 007402 64 KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPA 143 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~ 143 (605)
+..+|+=-||||||+..+. +.+.++.. ...+.++|+|-.++|-.|+.+.+..+...+.. . . ...+.
T Consensus 274 ~~G~IWHtqGSGKTlTm~~-~A~~l~~~-----~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~-----~--~-~~~s~ 339 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFK-LARLLLEL-----PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFN-----D--P-KAEST 339 (962)
T ss_pred CceEEEeecCCchHHHHHH-HHHHHHhc-----cCCCeEEEEechHHHHHHHHHHHHHHHHhhhh-----c--c-cccCH
Confidence 4689999999999997433 33334432 44788999999999999999999998765432 1 1 45566
Q ss_pred HHHHHHHcCC-CcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeec
Q 007402 144 SDLRAALAGP-PDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATS 222 (605)
Q Consensus 144 ~~~~~~l~~~-~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl 222 (605)
+..+..+... -.|||||-+.+...+.... ....-..=-++|+||||+- . |...-..+...++ +...++||+|+
T Consensus 340 ~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~--~~~~~~~~ivvI~DEaHRS-Q--~G~~~~~~~~~~~-~a~~~gFTGTP 413 (962)
T COG0610 340 SELKELLEDGKGKIIVTTIQKFNKAVKEDE--LELLKRKNVVVIIDEAHRS-Q--YGELAKLLKKALK-KAIFIGFTGTP 413 (962)
T ss_pred HHHHHHHhcCCCcEEEEEecccchhhhccc--ccccCCCcEEEEEechhhc-c--ccHHHHHHHHHhc-cceEEEeeCCc
Confidence 7777777755 4899999999987776541 1111222337899999983 2 3333444445555 48899999997
Q ss_pred C
Q 007402 223 S 223 (605)
Q Consensus 223 ~ 223 (605)
-
T Consensus 414 i 414 (962)
T COG0610 414 I 414 (962)
T ss_pred c
Confidence 4
No 168
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=98.69 E-value=1.4e-06 Score=97.34 Aligned_cols=117 Identities=26% Similarity=0.280 Sum_probs=97.9
Q ss_pred chHHHHHHHHHhh-cCCCeEEEEecchhHHHHHHHHHHHc----------------------CCcEEEEcCCCCHHHHHH
Q 007402 268 DKLLYILTLLKLE-LVQKKALIFTNTIDMAFRLKLFLEKF----------------------GIKSAILNAELPQNSRLH 324 (605)
Q Consensus 268 ~k~~~l~~llk~~-~~~~k~IIFv~s~~~~~~L~~~L~~~----------------------gi~~~~l~~~l~~~~R~~ 324 (605)
.|+.+|+.||+.- .++.|.|||..+......+..||+.. |.....|.|.....+|..
T Consensus 1126 gKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k 1205 (1567)
T KOG1015|consen 1126 GKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKK 1205 (1567)
T ss_pred cceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHH
Confidence 3556777777753 46789999999999999999999742 667788999999999999
Q ss_pred HHHHHHcCC----CcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhH
Q 007402 325 ILEEFNAGL----FDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGY 400 (605)
Q Consensus 325 i~~~F~~g~----~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~y 400 (605)
..++||.-. --.||+|.... =||++-.++.||.||.-|+|.--
T Consensus 1206 ~~~~FNdp~NlRaRl~LISTRAGs---------------------------------LGiNLvAANRVIIfDasWNPSyD 1252 (1567)
T KOG1015|consen 1206 WAEEFNDPTNLRARLFLISTRAGS---------------------------------LGINLVAANRVIIFDASWNPSYD 1252 (1567)
T ss_pred HHHHhcCcccceeEEEEEeeccCc---------------------------------cccceeecceEEEEecccCCccc
Confidence 999998732 34789997765 39999999999999999999999
Q ss_pred HHhhcccccCCCCccEE
Q 007402 401 VHRIGRTGRAYNTGASV 417 (605)
Q Consensus 401 iqRiGRtgR~g~~G~ai 417 (605)
+|-|=|+-|+|+..-++
T Consensus 1253 tQSIFRvyRfGQtKPvy 1269 (1567)
T KOG1015|consen 1253 TQSIFRVYRFGQTKPVY 1269 (1567)
T ss_pred hHHHHHHHhhcCcCcee
Confidence 99999999999965443
No 169
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.51 E-value=8e-07 Score=98.88 Aligned_cols=309 Identities=20% Similarity=0.220 Sum_probs=172.1
Q ss_pred HHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHH-----HHHhcCC
Q 007402 55 ASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMAL-----IELCKGQ 129 (605)
Q Consensus 55 ~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l-----~~~~~~~ 129 (605)
.....+....-+++.+.||+|||.-+.--+|+.++.... ..-.-+.+--|++--+.-+++.+.+- +..|+-
T Consensus 385 ~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~---g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy- 460 (1282)
T KOG0921|consen 385 EILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSN---GASFNAVVSQPRRISAISLAERVANERGEEVGETCGY- 460 (1282)
T ss_pred HHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccc---cccccceeccccccchHHHHHHHHHhhHHhhcccccc-
Confidence 333444444568899999999999999999998887532 11233566668888777777765432 111211
Q ss_pred cceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCcHHHHHHHHh--
Q 007402 130 VQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA-- 207 (605)
Q Consensus 130 ~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~~~l~~i~~-- 207 (605)
.++....+. ..---|..+|-+-++.++.++ +..+.++|+||.|..--.+ +.+..++.
T Consensus 461 -~vRf~Sa~p-----------rpyg~i~fctvgvllr~~e~g-------lrg~sh~i~deiherdv~~--dfll~~lr~m 519 (1282)
T KOG0921|consen 461 -NVRFDSATP-----------RPYGSIMFCTVGVLLRMMENG-------LRGISHVIIDEIHERDVDT--DFVLIVLREM 519 (1282)
T ss_pred -ccccccccc-----------ccccceeeeccchhhhhhhhc-------ccccccccchhhhhhccch--HHHHHHHHhh
Confidence 111111111 011257889999999988866 3457799999999632211 11111111
Q ss_pred -hCCCCceEEEEeeecChhH--------------------HHHHHHhcCCCeEEEcCC--------ccCccccccCCCcE
Q 007402 208 -VIPRGCQCLLMSATSSSDV--------------------DKLKKLILHNPYILTLPE--------VGDVKDEVIPKNVQ 258 (605)
Q Consensus 208 -~lp~~~q~il~SATl~~~v--------------------~~l~~~~l~~p~~i~l~~--------~~~~~~~~~~~~l~ 258 (605)
-.-.....++||||+..+. ..+....+..+......+ .....+....+.-.
T Consensus 520 ~~ty~dl~v~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~ 599 (1282)
T KOG0921|consen 520 ISTYRDLRVVLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGR 599 (1282)
T ss_pred hccchhhhhhhhhcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhccc
Confidence 1112344555555554332 111111111111000000 00000000000000
Q ss_pred EEEEEccc---------------c-chHHHHHHH---HHhhcCCCeEEEEecchhHHHHHHHHHHHc-------CCcEEE
Q 007402 259 QFWISCSE---------------R-DKLLYILTL---LKLELVQKKALIFTNTIDMAFRLKLFLEKF-------GIKSAI 312 (605)
Q Consensus 259 q~~~~~~~---------------~-~k~~~l~~l---lk~~~~~~k~IIFv~s~~~~~~L~~~L~~~-------gi~~~~ 312 (605)
.+-..|++ . --+.++.++ +....+.+-+++|.+-......|..+|... ......
T Consensus 600 n~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp 679 (1282)
T KOG0921|consen 600 NMNILCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILP 679 (1282)
T ss_pred ccccccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhccccc
Confidence 11111111 0 112223333 333445788999999999888888877543 356778
Q ss_pred EcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEE---
Q 007402 313 LNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVI--- 389 (605)
Q Consensus 313 l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI--- 389 (605)
+|+.++......+.+....|..++|+.|..++. -|.+.++..||
T Consensus 680 ~Hsq~~~~eqrkvf~~~p~gv~kii~stniaet---------------------------------siTidd~v~vid~c 726 (1282)
T KOG0921|consen 680 LHSQLTSQEQRKVFEPVPEGVTKIILSTNIAET---------------------------------SITIDDVVYVIDSC 726 (1282)
T ss_pred chhhcccHhhhhccCcccccccccccccceeeE---------------------------------eeeecceeEEEeee
Confidence 899999998889999999999999999998763 33333333333
Q ss_pred --------------EeCC-CCCchhHHHhhcccccCCCCccEEEEeCC
Q 007402 390 --------------NFEM-PQNAAGYVHRIGRTGRAYNTGASVSLVSP 422 (605)
Q Consensus 390 --------------~fd~-P~s~~~yiqRiGRtgR~g~~G~ai~~v~~ 422 (605)
+|-- -.|....+||-||+||. ++|.|..+.+.
T Consensus 727 ka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs~ 773 (1282)
T KOG0921|consen 727 KAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCSR 773 (1282)
T ss_pred eeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccHH
Confidence 2222 23566788999999998 67888777654
No 170
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.49 E-value=2.2e-06 Score=99.00 Aligned_cols=151 Identities=14% Similarity=0.175 Sum_probs=88.6
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHH-HH-HHhc---CCcceEEEEEe
Q 007402 64 KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMA-LI-ELCK---GQVQLKVVQLT 138 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~-l~-~~~~---~~~~i~v~~l~ 138 (605)
.++.+.++||+|||.+|+-.|++..-. -...+.||+||+.+.-..+...+.. .. .++. ....+....+.
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~------~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~ 133 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQK------YGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVIN 133 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHH------cCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEe
Confidence 378999999999999998887765433 2346799999999999988877662 11 1111 11135555555
Q ss_pred CCC-------C-HHHHHHHHcC------CCcEEEECCchHHHHHhcCCC------C-CcccCCC----ceEEEEeCcchh
Q 007402 139 SSM-------P-ASDLRAALAG------PPDIVIATPGCMPKCLSTGVL------Q-SKSFSDS----LKILVLDEADLL 193 (605)
Q Consensus 139 ~~~-------~-~~~~~~~l~~------~~dIvV~TP~~l~~~l~~~~~------~-~~~~l~~----l~~lViDEad~i 193 (605)
++. + .......... ..+|+|.|-+.+..-...... . ....+.. =-+||+||.|++
T Consensus 134 S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~ 213 (986)
T PRK15483 134 AGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRF 213 (986)
T ss_pred cCcccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCC
Confidence 432 1 1122222221 478999998776442110000 0 0011111 137999999998
Q ss_pred ccCCcHHHHHHHHhhCCCCceEEEEeeecCh
Q 007402 194 LSYGYEDDLKALSAVIPRGCQCLLMSATSSS 224 (605)
Q Consensus 194 ~~~g~~~~l~~i~~~lp~~~q~il~SATl~~ 224 (605)
-.. ...+..|...-| .+ ++.+|||.++
T Consensus 214 ~~~--~k~~~~i~~lnp-l~-~lrysAT~~~ 240 (986)
T PRK15483 214 PRD--NKFYQAIEALKP-QM-IIRFGATFPD 240 (986)
T ss_pred Ccc--hHHHHHHHhcCc-cc-EEEEeeecCC
Confidence 653 223455533333 22 5679999986
No 171
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.18 E-value=1.9e-05 Score=77.92 Aligned_cols=72 Identities=17% Similarity=0.268 Sum_probs=50.8
Q ss_pred ChHHHHHHHHHHhCCCc-EEEEcCCCchHHHHHHHHHHHHHhhcC-CCCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q 007402 49 PTLIQQASIPLILEGKD-VVARAKTGSGKTFAYLLPLLHRLFNES-SPKSKLAPAALVLVPTRELCQQVYSEVMA 121 (605)
Q Consensus 49 pt~iQ~~aIp~~l~gkd-vlv~a~TGsGKT~a~~lpil~~ll~~~-~~~~~~~~~~LilvPtreLa~Qv~~~~~~ 121 (605)
+.+-|.+||..++...+ .++.||+|||||.+.. -++..++... ......+.++||++||..-++++.+.+.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~-~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTLA-SIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHH-HHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHH-HHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 57889999999999998 9999999999995433 3444442100 00024477899999999999999998887
No 172
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=98.12 E-value=2.2e-05 Score=89.66 Aligned_cols=125 Identities=26% Similarity=0.354 Sum_probs=96.3
Q ss_pred ccccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCC--CcEEEEcC
Q 007402 264 CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGL--FDYLIATD 341 (605)
Q Consensus 264 ~~~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~--~~iLIaTd 341 (605)
|..-.++.+|+.-|+ ..+.++|||+.......-|..||.-.|+-..-|.|.....+|...+++||... +..|++|.
T Consensus 1259 cGKLQtLAiLLqQLk--~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTr 1336 (1958)
T KOG0391|consen 1259 CGKLQTLAILLQQLK--SEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTR 1336 (1958)
T ss_pred cchHHHHHHHHHHHH--hcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEecc
Confidence 333344444444444 44789999999999999999999999999999999999999999999999864 56677776
Q ss_pred CCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCc--cEEEE
Q 007402 342 DTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTG--ASVSL 419 (605)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G--~ai~~ 419 (605)
... + |||+-+.+.||+||--|++.---|.--||.|.|+.- ..+-|
T Consensus 1337 Sgg-------------------------------v--GiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRL 1383 (1958)
T KOG0391|consen 1337 SGG-------------------------------V--GINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRL 1383 (1958)
T ss_pred CCc-------------------------------c--ccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEe
Confidence 644 3 999999999999999999876666555555555533 33556
Q ss_pred eCCc
Q 007402 420 VSPD 423 (605)
Q Consensus 420 v~~~ 423 (605)
++..
T Consensus 1384 ISe~ 1387 (1958)
T KOG0391|consen 1384 ISER 1387 (1958)
T ss_pred eccc
Confidence 6654
No 173
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.11 E-value=9.9e-07 Score=99.98 Aligned_cols=225 Identities=20% Similarity=0.194 Sum_probs=131.5
Q ss_pred ChHHHHHHHHHHh-CCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHHhc
Q 007402 49 PTLIQQASIPLIL-EGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCK 127 (605)
Q Consensus 49 pt~iQ~~aIp~~l-~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~ 127 (605)
..|+|.+.+-..- -..++++-+|||+|||.+|-+.+...+.. .++.+++++.|-+.|+..-.+........
T Consensus 928 fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~------~p~~kvvyIap~kalvker~~Dw~~r~~~-- 999 (1230)
T KOG0952|consen 928 FNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSY------YPGSKVVYIAPDKALVKERSDDWSKRDEL-- 999 (1230)
T ss_pred cCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhcc------CCCccEEEEcCCchhhcccccchhhhccc--
Confidence 3445554442221 12578999999999999999888776544 34678999999999988777666554321
Q ss_pred CCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCcHHHHHH---
Q 007402 128 GQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA--- 204 (605)
Q Consensus 128 ~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~~~l~~--- 204 (605)
+ +++++.++|+...+.. -...++|+|+||+++-.+.++.. +...+.++..+|+||.|++.+. +.+.++-
T Consensus 1000 ~--g~k~ie~tgd~~pd~~---~v~~~~~~ittpek~dgi~Rsw~--~r~~v~~v~~iv~de~hllg~~-rgPVle~ivs 1071 (1230)
T KOG0952|consen 1000 P--GIKVIELTGDVTPDVK---AVREADIVITTPEKWDGISRSWQ--TRKYVQSVSLIVLDEIHLLGED-RGPVLEVIVS 1071 (1230)
T ss_pred C--CceeEeccCccCCChh---heecCceEEcccccccCcccccc--chhhhccccceeecccccccCC-CcceEEEEee
Confidence 1 6888999888765421 12368999999999987776433 4567788999999999986543 2222222
Q ss_pred ----HHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccc----ccc-CCCcEEEEEEccccchHHHHHH
Q 007402 205 ----LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD----EVI-PKNVQQFWISCSERDKLLYILT 275 (605)
Q Consensus 205 ----i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~----~~~-~~~l~q~~~~~~~~~k~~~l~~ 275 (605)
+....++..+.+++|--+.+. ..+++..-..+. ..... ..++ ... .-...+++....... .-.+.
T Consensus 1072 r~n~~s~~t~~~vr~~glsta~~na-~dla~wl~~~~~-~nf~~--svrpvp~~~~i~gfp~~~~cprm~smn--kpa~q 1145 (1230)
T KOG0952|consen 1072 RMNYISSQTEEPVRYLGLSTALANA-NDLADWLNIKDM-YNFRP--SVRPVPLEVHIDGFPGQHYCPRMMSMN--KPAFQ 1145 (1230)
T ss_pred ccccCccccCcchhhhhHhhhhhcc-HHHHHHhCCCCc-CCCCc--ccccCCceEeecCCCchhcchhhhhcc--cHHHH
Confidence 233344556666665444322 223332211111 00000 0000 000 001122222222222 23345
Q ss_pred HHHhhcCCCeEEEEecchhH
Q 007402 276 LLKLELVQKKALIFTNTIDM 295 (605)
Q Consensus 276 llk~~~~~~k~IIFv~s~~~ 295 (605)
.++.+.+..++|||+.+...
T Consensus 1146 aik~~sp~~p~lifv~srrq 1165 (1230)
T KOG0952|consen 1146 AIKTHSPIKPVLIFVSSRRQ 1165 (1230)
T ss_pred HHhcCCCCCceEEEeecccc
Confidence 56667778899999998764
No 174
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.02 E-value=0.00013 Score=84.40 Aligned_cols=70 Identities=14% Similarity=0.013 Sum_probs=53.7
Q ss_pred cCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecCh
Q 007402 151 AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSS 224 (605)
Q Consensus 151 ~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~~ 224 (605)
.....|+++||..|..-+-.+. +.++.+..|||||||++....-+..+-.+...-.+..=+.+|||.+..
T Consensus 5 y~~ggi~~~T~rIl~~DlL~~r----i~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~ 74 (814)
T TIGR00596 5 YLEGGIFSITSRILVVDLLTGI----IPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPEA 74 (814)
T ss_pred hhcCCEEEEechhhHhHHhcCC----CCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCcc
Confidence 3456899999999877776664 888999999999999987665555566666555556668889998764
No 175
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.01 E-value=3.2e-05 Score=75.03 Aligned_cols=127 Identities=19% Similarity=0.254 Sum_probs=73.3
Q ss_pred CChHHHHHHHHHHhCCC--cEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHH
Q 007402 48 KPTLIQQASIPLILEGK--DVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIEL 125 (605)
Q Consensus 48 ~pt~iQ~~aIp~~l~gk--dvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~ 125 (605)
++++-|.+|+..++... -+++.++.|+|||.+ +-.+...+.. .+.++++++||...+..+.+..
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~-------~g~~v~~~apT~~Aa~~L~~~~------ 66 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEA-------AGKRVIGLAPTNKAAKELREKT------ 66 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHH-------TT--EEEEESSHHHHHHHHHHH------
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHh-------CCCeEEEECCcHHHHHHHHHhh------
Confidence 36889999999998654 377889999999974 3334444433 2577999999988777655542
Q ss_pred hcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCcHHHHHHH
Q 007402 126 CKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL 205 (605)
Q Consensus 126 ~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~~~l~~i 205 (605)
++.+..+. ..+. ............+...++||||||-.+. ...+..+
T Consensus 67 -----~~~a~Ti~---------~~l~---------------~~~~~~~~~~~~~~~~~vliVDEasmv~----~~~~~~l 113 (196)
T PF13604_consen 67 -----GIEAQTIH---------SFLY---------------RIPNGDDEGRPELPKKDVLIVDEASMVD----SRQLARL 113 (196)
T ss_dssp -----TS-EEEHH---------HHTT---------------EECCEECCSSCC-TSTSEEEESSGGG-B----HHHHHHH
T ss_pred -----CcchhhHH---------HHHh---------------cCCcccccccccCCcccEEEEecccccC----HHHHHHH
Confidence 12221111 1110 0000000000114456799999998765 5678888
Q ss_pred HhhCCC-CceEEEEeee
Q 007402 206 SAVIPR-GCQCLLMSAT 221 (605)
Q Consensus 206 ~~~lp~-~~q~il~SAT 221 (605)
+..++. +.+++++.-+
T Consensus 114 l~~~~~~~~klilvGD~ 130 (196)
T PF13604_consen 114 LRLAKKSGAKLILVGDP 130 (196)
T ss_dssp HHHS-T-T-EEEEEE-T
T ss_pred HHHHHhcCCEEEEECCc
Confidence 888876 7788777654
No 176
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.97 E-value=5e-05 Score=73.61 Aligned_cols=142 Identities=18% Similarity=0.232 Sum_probs=76.1
Q ss_pred CCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHH-------HHHH
Q 007402 47 QKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQV-------YSEV 119 (605)
Q Consensus 47 ~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv-------~~~~ 119 (605)
...|+-|..++..++...-+++.||.|||||+.++-.+++.+.. ..-.+.+|.-|+.+....+ .+.+
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~------g~~~kiii~Rp~v~~~~~lGflpG~~~eK~ 76 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKE------GEYDKIIITRPPVEAGEDLGFLPGDLEEKM 76 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHT------TS-SEEEEEE-S--TT----SS--------
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHh------CCCcEEEEEecCCCCccccccCCCCHHHHH
Confidence 44688999999999988889999999999999998888887765 2245678877876531110 0111
Q ss_pred ----HHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhcc
Q 007402 120 ----MALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLS 195 (605)
Q Consensus 120 ----~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~ 195 (605)
..+...+.. +.+.... ..+.....|-+..++.+ +| ..++ -.+||||||+.+.
T Consensus 77 ~p~~~p~~d~l~~--------~~~~~~~----~~~~~~~~Ie~~~~~~i-----RG-----rt~~-~~~iIvDEaQN~t- 132 (205)
T PF02562_consen 77 EPYLRPIYDALEE--------LFGKEKL----EELIQNGKIEIEPLAFI-----RG-----RTFD-NAFIIVDEAQNLT- 132 (205)
T ss_dssp -TTTHHHHHHHTT--------TS-TTCH----HHHHHTTSEEEEEGGGG-----TT-------B--SEEEEE-SGGG---
T ss_pred HHHHHHHHHHHHH--------HhChHhH----HHHhhcCeEEEEehhhh-----cC-----cccc-ceEEEEecccCCC-
Confidence 111111100 0011111 11222445555554333 22 2222 2799999999875
Q ss_pred CCcHHHHHHHHhhCCCCceEEEEeee
Q 007402 196 YGYEDDLKALSAVIPRGCQCLLMSAT 221 (605)
Q Consensus 196 ~g~~~~l~~i~~~lp~~~q~il~SAT 221 (605)
...++.++..+..+++++++.-.
T Consensus 133 ---~~~~k~ilTR~g~~skii~~GD~ 155 (205)
T PF02562_consen 133 ---PEELKMILTRIGEGSKIIITGDP 155 (205)
T ss_dssp ---HHHHHHHHTTB-TT-EEEEEE--
T ss_pred ---HHHHHHHHcccCCCcEEEEecCc
Confidence 67899999999999999887643
No 177
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.91 E-value=0.0002 Score=70.05 Aligned_cols=159 Identities=20% Similarity=0.302 Sum_probs=102.6
Q ss_pred cCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhC---CCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeE
Q 007402 26 KSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILE---GKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAA 102 (605)
Q Consensus 26 ~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~---gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~ 102 (605)
.+|+.+.-+.+|+=.+.. ++ -.++.|.+....+.+ |++.+.++-+|.|||.+ ++|++..++..+ ..-+
T Consensus 3 ~~w~p~~~P~wLl~E~e~-~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg------~~Lv 73 (229)
T PF12340_consen 3 RNWDPMEYPDWLLFEIES-NI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADG------SRLV 73 (229)
T ss_pred CCCCchhChHHHHHHHHc-Cc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCC------CcEE
Confidence 467777777777666654 43 579999998887775 57999999999999976 789988888642 3457
Q ss_pred EEEcCcHHHHHHHHHHHHHHHHH-hcCCcceEEEEEeCCCCH--HH---HHH---HHcCCCcEEEECCchHHHHHhc---
Q 007402 103 LVLVPTRELCQQVYSEVMALIEL-CKGQVQLKVVQLTSSMPA--SD---LRA---ALAGPPDIVIATPGCMPKCLST--- 170 (605)
Q Consensus 103 LilvPtreLa~Qv~~~~~~l~~~-~~~~~~i~v~~l~~~~~~--~~---~~~---~l~~~~dIvV~TP~~l~~~l~~--- 170 (605)
.++|| +.|..|.++.+.+-+.. ++. .+-...++-.... .. ... .....-.|+++||+.++...-.
T Consensus 74 rviVp-k~Ll~q~~~~L~~~lg~l~~r--~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le 150 (229)
T PF12340_consen 74 RVIVP-KALLEQMRQMLRSRLGGLLNR--RIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLE 150 (229)
T ss_pred EEEcC-HHHHHHHHHHHHHHHHHHhCC--eeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHH
Confidence 77778 67999999998865543 333 3444444433322 11 111 1224567999999987543221
Q ss_pred ----CCCCC-------cccCCCceEEEEeCcchhccC
Q 007402 171 ----GVLQS-------KSFSDSLKILVLDEADLLLSY 196 (605)
Q Consensus 171 ----~~~~~-------~~~l~~l~~lViDEad~i~~~ 196 (605)
+.... ...+.....=|+||+|.+++.
T Consensus 151 ~l~~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~~ 187 (229)
T PF12340_consen 151 RLQDGKPEEARELLKIQKWLDEHSRDILDESDEILSV 187 (229)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhcCCeEeECchhccCc
Confidence 11000 012233345699999998865
No 178
>PRK10536 hypothetical protein; Provisional
Probab=97.75 E-value=0.001 Score=66.50 Aligned_cols=144 Identities=14% Similarity=0.130 Sum_probs=86.9
Q ss_pred CCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHH-----------H
Q 007402 44 KGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTREL-----------C 112 (605)
Q Consensus 44 ~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreL-----------a 112 (605)
.++..-+..|...+..+..+.-+++.+++|||||...+-..++.++.. .-.+++|.=|+.+. .
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~------~~~kIiI~RP~v~~ge~LGfLPG~~~ 128 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHK------DVDRIIVTRPVLQADEDLGFLPGDIA 128 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcC------CeeEEEEeCCCCCchhhhCcCCCCHH
Confidence 355566889999999888888899999999999998777777665541 13345555566432 2
Q ss_pred HHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHH-cCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcc
Q 007402 113 QQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL-AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 191 (605)
Q Consensus 113 ~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l-~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad 191 (605)
+-+..++.-+...+.. +.+. ......+ .+.-.|-|.. +.+++... +. -.+||||||+
T Consensus 129 eK~~p~~~pi~D~L~~--------~~~~---~~~~~~~~~~~~~Iei~~----l~ymRGrt------l~-~~~vIvDEaq 186 (262)
T PRK10536 129 EKFAPYFRPVYDVLVR--------RLGA---SFMQYCLRPEIGKVEIAP----FAYMRGRT------FE-NAVVILDEAQ 186 (262)
T ss_pred HHHHHHHHHHHHHHHH--------HhCh---HHHHHHHHhccCcEEEec----HHHhcCCc------cc-CCEEEEechh
Confidence 2222222222221110 0011 1112222 1233455555 45555432 22 3699999999
Q ss_pred hhccCCcHHHHHHHHhhCCCCceEEEEe
Q 007402 192 LLLSYGYEDDLKALSAVIPRGCQCLLMS 219 (605)
Q Consensus 192 ~i~~~g~~~~l~~i~~~lp~~~q~il~S 219 (605)
.+. ...++.++..++.+.++|++.
T Consensus 187 n~~----~~~~k~~ltR~g~~sk~v~~G 210 (262)
T PRK10536 187 NVT----AAQMKMFLTRLGENVTVIVNG 210 (262)
T ss_pred cCC----HHHHHHHHhhcCCCCEEEEeC
Confidence 875 478899999999888888654
No 179
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.75 E-value=0.00015 Score=79.13 Aligned_cols=85 Identities=21% Similarity=0.241 Sum_probs=67.5
Q ss_pred HHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHH
Q 007402 40 ALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEV 119 (605)
Q Consensus 40 al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~ 119 (605)
.+...|+.++..-|..|+..+|...=.|+++|+|+|||.+-.--+++.+-. .+..+|+.+|+---++|+++.+
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~-------~~~~VLvcApSNiAVDqLaeKI 474 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ-------HAGPVLVCAPSNIAVDQLAEKI 474 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHh-------cCCceEEEcccchhHHHHHHHH
Confidence 445568888899999999999999999999999999998766555554433 2566999999999999999888
Q ss_pred HHHHHHhcCCcceEEEEEeC
Q 007402 120 MALIELCKGQVQLKVVQLTS 139 (605)
Q Consensus 120 ~~l~~~~~~~~~i~v~~l~~ 139 (605)
.+. +++|+.+..
T Consensus 475 h~t--------gLKVvRl~a 486 (935)
T KOG1802|consen 475 HKT--------GLKVVRLCA 486 (935)
T ss_pred Hhc--------CceEeeeeh
Confidence 764 455555543
No 180
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.75 E-value=0.00019 Score=72.92 Aligned_cols=194 Identities=15% Similarity=0.139 Sum_probs=118.3
Q ss_pred CchhhchhHHhhhhhhcccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhC----------CCcEEEEcCCCchHH
Q 007402 8 PSKEVKQAEEEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILE----------GKDVVARAKTGSGKT 77 (605)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~----------gkdvlv~a~TGsGKT 77 (605)
|...|-+++..+-. +...+-.+.|++.++ ..|. ++.-|-++|-.+.+ +.-+++--.||.||-
T Consensus 5 P~~vvEs~~lasv~--~P~~~y~~~lp~~~~----~~g~--LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKG 76 (303)
T PF13872_consen 5 PDPVVESASLASVA--PPDPTYRLHLPEEVI----DSGL--LSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKG 76 (303)
T ss_pred CchHhhhhhhhcCC--CCCCCcccCCCHHHH----hccc--ccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCcc
Confidence 44444444443332 233334556777654 3343 57788888876652 356889999999998
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEE
Q 007402 78 FAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIV 157 (605)
Q Consensus 78 ~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIv 157 (605)
-...--|+++++.. ..++|++..+-.|.....+.+..+... .+.+..+..-. .. ....-.-.||
T Consensus 77 R~iAgiI~~n~l~G-------r~r~vwvS~s~dL~~Da~RDl~DIG~~-----~i~v~~l~~~~-~~---~~~~~~~Gvl 140 (303)
T PF13872_consen 77 RQIAGIILENWLRG-------RKRAVWVSVSNDLKYDAERDLRDIGAD-----NIPVHPLNKFK-YG---DIIRLKEGVL 140 (303)
T ss_pred chhHHHHHHHHHcC-------CCceEEEECChhhhhHHHHHHHHhCCC-----cccceechhhc-cC---cCCCCCCCcc
Confidence 87777778887763 346999999999999988888876532 23333322210 00 0011244799
Q ss_pred EECCchHHHHHhcCC-CCCcc-----cC--CCceEEEEeCcchhccCCc--------HHHHHHHHhhCCCCceEEEEeee
Q 007402 158 IATPGCMPKCLSTGV-LQSKS-----FS--DSLKILVLDEADLLLSYGY--------EDDLKALSAVIPRGCQCLLMSAT 221 (605)
Q Consensus 158 V~TP~~l~~~l~~~~-~~~~~-----~l--~~l~~lViDEad~i~~~g~--------~~~l~~i~~~lp~~~q~il~SAT 221 (605)
.+|+..|...-..+. ....+ ++ +.=.+||+||||.+-+..- ...+..+...+|. .+++.+|||
T Consensus 141 F~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~-ARvvY~SAT 219 (303)
T PF13872_consen 141 FSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPN-ARVVYASAT 219 (303)
T ss_pred chhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCC-CcEEEeccc
Confidence 999888766543211 00110 00 1224899999999876532 1345566677875 459999999
Q ss_pred cChhH
Q 007402 222 SSSDV 226 (605)
Q Consensus 222 l~~~v 226 (605)
--.+.
T Consensus 220 gasep 224 (303)
T PF13872_consen 220 GASEP 224 (303)
T ss_pred ccCCC
Confidence 65444
No 181
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.62 E-value=0.00059 Score=77.81 Aligned_cols=66 Identities=15% Similarity=0.201 Sum_probs=51.6
Q ss_pred CChHHHHHHHHHHhCC-CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q 007402 48 KPTLIQQASIPLILEG-KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMA 121 (605)
Q Consensus 48 ~pt~iQ~~aIp~~l~g-kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~ 121 (605)
.+++.|..|+..++.. ..+++.||+|+|||.+..--+.+ ++. .+.++|+++||..-+.++.+.+..
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~-~~~-------~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQ-LVK-------RGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHH-HHH-------cCCCEEEEcCcHHHHHHHHHHHHh
Confidence 4588999999999987 56889999999999765443334 333 145799999999988888887765
No 182
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=97.61 E-value=0.00026 Score=81.34 Aligned_cols=160 Identities=20% Similarity=0.198 Sum_probs=103.8
Q ss_pred hHHHHHHHHHHhC----CCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHH
Q 007402 50 TLIQQASIPLILE----GKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIEL 125 (605)
Q Consensus 50 t~iQ~~aIp~~l~----gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~ 125 (605)
+.||...+.++.. .=+-|+....|-|||.- .|.++.++.-++ .+-.--||+|||.-+.+ |--+|++ +
T Consensus 617 ReYQkiGLdWLatLYeknlNGILADEmGLGKTIQ-tISllAhLACee----gnWGPHLIVVpTsviLn-WEMElKR---w 687 (1958)
T KOG0391|consen 617 REYQKIGLDWLATLYEKNLNGILADEMGLGKTIQ-TISLLAHLACEE----GNWGPHLIVVPTSVILN-WEMELKR---W 687 (1958)
T ss_pred HHHHHhhHHHHHHHHHhcccceehhhhcccchhH-HHHHHHHHHhcc----cCCCCceEEeechhhhh-hhHHHhh---h
Confidence 5678777776542 23678999999999975 455555554322 23344899999977654 3444444 4
Q ss_pred hcCCcceEEEEEeCCCCHHHHHHHHc---CCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCcHHHH
Q 007402 126 CKGQVQLKVVQLTSSMPASDLRAALA---GPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 202 (605)
Q Consensus 126 ~~~~~~i~v~~l~~~~~~~~~~~~l~---~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~~~l 202 (605)
|. ++++..++|.......++.-+ +.++|.|+.+..+..-+.. +.-.+++|+||||||.|-+|. ...+
T Consensus 688 cP---glKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~A------FkrkrWqyLvLDEaqnIKnfk-sqrW 757 (1958)
T KOG0391|consen 688 CP---GLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTA------FKRKRWQYLVLDEAQNIKNFK-SQRW 757 (1958)
T ss_pred CC---cceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHH------HHhhccceeehhhhhhhcchh-HHHH
Confidence 54 689999999865444333333 3467888887666554432 445679999999999998774 4556
Q ss_pred HHHHhhCCCCceEEEEeeec-ChhHHHHH
Q 007402 203 KALSAVIPRGCQCLLMSATS-SSDVDKLK 230 (605)
Q Consensus 203 ~~i~~~lp~~~q~il~SATl-~~~v~~l~ 230 (605)
+.++..- ..+.+|++.|+ -+.+.+|.
T Consensus 758 QAllnfn--sqrRLLLtgTPLqNslmELW 784 (1958)
T KOG0391|consen 758 QALLNFN--SQRRLLLTGTPLQNSLMELW 784 (1958)
T ss_pred HHHhccc--hhheeeecCCchhhHHHHHH
Confidence 6666543 34566777774 44444443
No 183
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.59 E-value=0.00012 Score=68.99 Aligned_cols=106 Identities=25% Similarity=0.268 Sum_probs=70.8
Q ss_pred CCCeEEEEecchhHHHHHHHHHHHcC----CcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCc
Q 007402 282 VQKKALIFTNTIDMAFRLKLFLEKFG----IKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHV 357 (605)
Q Consensus 282 ~~~k~IIFv~s~~~~~~L~~~L~~~g----i~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~ 357 (605)
.++.+|||++|....+.+...+...+ +.+.. . ...++..++++|..+.-.||+|+.-..
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~--q--~~~~~~~~l~~~~~~~~~il~~v~~g~------------- 70 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFV--Q--GSKSRDELLEEFKRGEGAILLAVAGGS------------- 70 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEE--S--TCCHHHHHHHHHCCSSSEEEEEETTSC-------------
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeee--c--CcchHHHHHHHHHhccCeEEEEEeccc-------------
Confidence 46999999999999999999887653 33322 2 356788999999999999999997322
Q ss_pred ccccccCCCCCccccccccccccccCC--ccEEEEeCCCCC-c-----------------------------hhHHHhhc
Q 007402 358 DSRKSKKHPKAKLDSEFGVVRGIDFKN--VHTVINFEMPQN-A-----------------------------AGYVHRIG 405 (605)
Q Consensus 358 ~~~~~~~~~~~~~~~~~gv~rGiD~~~--v~~VI~fd~P~s-~-----------------------------~~yiqRiG 405 (605)
+++|||+++ +.+||...+|-. + ....|.+|
T Consensus 71 ------------------~~EGiD~~~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~G 132 (167)
T PF13307_consen 71 ------------------FSEGIDFPGDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIG 132 (167)
T ss_dssp ------------------CGSSS--ECESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHH
T ss_pred ------------------EEEeecCCCchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcC
Confidence 457999995 778999998831 1 12247889
Q ss_pred ccccCCCCccEEEEeCC
Q 007402 406 RTGRAYNTGASVSLVSP 422 (605)
Q Consensus 406 RtgR~g~~G~ai~~v~~ 422 (605)
|+-|..+.=-++.++..
T Consensus 133 R~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 133 RLIRSEDDYGVIILLDS 149 (167)
T ss_dssp CC--STT-EEEEEEESG
T ss_pred cceeccCCcEEEEEEcC
Confidence 99998775445555554
No 184
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.52 E-value=0.0004 Score=73.72 Aligned_cols=108 Identities=19% Similarity=0.210 Sum_probs=66.1
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHH
Q 007402 65 DVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144 (605)
Q Consensus 65 dvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~ 144 (605)
-++|.|..|||||+..+- ++..+.. ...+..++++++...|...+.+.+..-. +..
T Consensus 3 v~~I~G~aGTGKTvla~~-l~~~l~~-----~~~~~~~~~l~~n~~l~~~l~~~l~~~~--~~~---------------- 58 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALN-LAKELQN-----SEEGKKVLYLCGNHPLRNKLREQLAKKY--NPK---------------- 58 (352)
T ss_pred EEEEEecCCcCHHHHHHH-HHHHhhc-----cccCCceEEEEecchHHHHHHHHHhhhc--ccc----------------
Confidence 378999999999986543 3333311 1346779999999999998888776542 000
Q ss_pred HHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCC-------cHHHHHHHHhh
Q 007402 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYG-------YEDDLKALSAV 208 (605)
Q Consensus 145 ~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g-------~~~~l~~i~~~ 208 (605)
.....+..|..+...+.. ........++|||||||++...+ ..+.+..++..
T Consensus 59 --------~~~~~~~~~~~~i~~~~~----~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 59 --------LKKSDFRKPTSFINNYSE----SDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred --------hhhhhhhhhHHHHhhccc----ccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 001122233333332221 12445678999999999998732 24566666665
No 185
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.45 E-value=0.00047 Score=75.08 Aligned_cols=63 Identities=17% Similarity=0.284 Sum_probs=52.2
Q ss_pred ChHHHHHHHHHHhCCCc-EEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHH
Q 007402 49 PTLIQQASIPLILEGKD-VVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEV 119 (605)
Q Consensus 49 pt~iQ~~aIp~~l~gkd-vlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~ 119 (605)
..+-|..|+..+.+.++ .++.||+|+|||.....-|.|.+.. +.++||..||.+-+..+.+.+
T Consensus 186 ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~--------~k~VLVcaPSn~AVdNiverl 249 (649)
T KOG1803|consen 186 LNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ--------KKRVLVCAPSNVAVDNIVERL 249 (649)
T ss_pred ccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc--------CCeEEEEcCchHHHHHHHHHh
Confidence 46789999999999876 5799999999999877766665544 567999999999999888853
No 186
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.44 E-value=0.0014 Score=75.89 Aligned_cols=135 Identities=18% Similarity=0.134 Sum_probs=82.1
Q ss_pred HHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q 007402 42 NKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMA 121 (605)
Q Consensus 42 ~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~ 121 (605)
...++ .+++-|.+|+..++.++-+++.++.|+|||.+. -.+++.+... .....+++++||-.-+..+.+..
T Consensus 318 ~~~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~-----~~~~~v~l~ApTg~AA~~L~e~~-- 388 (720)
T TIGR01448 318 KKLRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEEL-----GGLLPVGLAAPTGRAAKRLGEVT-- 388 (720)
T ss_pred HhcCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHc-----CCCceEEEEeCchHHHHHHHHhc--
Confidence 33564 689999999999999999999999999999743 2233332221 11156888899987766443321
Q ss_pred HHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCcHHH
Q 007402 122 LIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDD 201 (605)
Q Consensus 122 l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~~~ 201 (605)
+... ......+...++ ..... . .......++||||||+.+- ...
T Consensus 389 ---------g~~a---------~Tih~lL~~~~~-------~~~~~---~----~~~~~~~~llIvDEaSMvd----~~~ 432 (720)
T TIGR01448 389 ---------GLTA---------STIHRLLGYGPD-------TFRHN---H----LEDPIDCDLLIVDESSMMD----TWL 432 (720)
T ss_pred ---------CCcc---------ccHHHHhhccCC-------ccchh---h----hhccccCCEEEEeccccCC----HHH
Confidence 1110 011112211111 00000 0 0112346799999999874 456
Q ss_pred HHHHHhhCCCCceEEEEeee
Q 007402 202 LKALSAVIPRGCQCLLMSAT 221 (605)
Q Consensus 202 l~~i~~~lp~~~q~il~SAT 221 (605)
+..++..+|.+.++|++.-+
T Consensus 433 ~~~Ll~~~~~~~rlilvGD~ 452 (720)
T TIGR01448 433 ALSLLAALPDHARLLLVGDT 452 (720)
T ss_pred HHHHHHhCCCCCEEEEECcc
Confidence 78888889999999987654
No 187
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.43 E-value=0.0015 Score=73.70 Aligned_cols=147 Identities=18% Similarity=0.166 Sum_probs=86.6
Q ss_pred hHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCC
Q 007402 50 TLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQ 129 (605)
Q Consensus 50 t~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~ 129 (605)
...|..|+..++.++-+++.++.|+|||.+. ..++..+..... .....++++.+||--=+..+.+.+......
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v-~~ll~~l~~~~~--~~~~~~I~l~APTGkAA~rL~e~~~~~~~~---- 219 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTV-ARLLLALVKQSP--KQGKLRIALAAPTGKAAARLAESLRKAVKN---- 219 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHH-HHHHHHHHHhcc--ccCCCcEEEECCcHHHHHHHHHHHHhhhcc----
Confidence 3799999999999999999999999999753 223333332111 011357999999988777766655443211
Q ss_pred cceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcC--CCCCcccCCCceEEEEeCcchhccCCcHHHHHHHHh
Q 007402 130 VQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTG--VLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207 (605)
Q Consensus 130 ~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~--~~~~~~~l~~l~~lViDEad~i~~~g~~~~l~~i~~ 207 (605)
+.. . . .... ...+-..|-.+++...... ..........+++||||||=.+- ...+..++.
T Consensus 220 --l~~---~----~-~~~~----~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd----~~l~~~ll~ 281 (586)
T TIGR01447 220 --LAA---A----E-ALIA----ALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD----LPLMAKLLK 281 (586)
T ss_pred --ccc---c----h-hhhh----ccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC----HHHHHHHHH
Confidence 110 0 0 0000 1111233433333221110 00001122357899999996553 557888899
Q ss_pred hCCCCceEEEEeee
Q 007402 208 VIPRGCQCLLMSAT 221 (605)
Q Consensus 208 ~lp~~~q~il~SAT 221 (605)
.+|...++|++.-.
T Consensus 282 al~~~~rlIlvGD~ 295 (586)
T TIGR01447 282 ALPPNTKLILLGDK 295 (586)
T ss_pred hcCCCCEEEEECCh
Confidence 99999999987644
No 188
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.41 E-value=0.0018 Score=73.20 Aligned_cols=146 Identities=16% Similarity=0.133 Sum_probs=86.6
Q ss_pred hHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCC
Q 007402 50 TLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQ 129 (605)
Q Consensus 50 t~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~ 129 (605)
.++|..|+-.++.++-+++.+++|+|||.+. .-++..+.... .....++++.+||..=|..+.+.+......
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v-~~ll~~l~~~~---~~~~~~i~l~APTgkAA~rL~e~~~~~~~~---- 225 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTV-AKLLAALIQLA---DGERCRIRLAAPTGKAAARLTESLGKALRQ---- 225 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH-HHHHHHHHHhc---CCCCcEEEEECCcHHHHHHHHHHHHhhhhc----
Confidence 5899999999999999999999999999753 22333333211 112457888999998888777766543321
Q ss_pred cceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCC--CCCcccCCCceEEEEeCcchhccCCcHHHHHHHHh
Q 007402 130 VQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGV--LQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207 (605)
Q Consensus 130 ~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~--~~~~~~l~~l~~lViDEad~i~~~g~~~~l~~i~~ 207 (605)
+.. .. .... ....-..|-.+++.....+. ..+....-.+++||||||-.+- ...+..++.
T Consensus 226 --~~~---~~-----~~~~----~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd----~~lm~~ll~ 287 (615)
T PRK10875 226 --LPL---TD-----EQKK----RIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD----LPMMARLID 287 (615)
T ss_pred --ccc---ch-----hhhh----cCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc----HHHHHHHHH
Confidence 110 00 0000 00011223222222111100 0001222346899999997653 667888999
Q ss_pred hCCCCceEEEEeee
Q 007402 208 VIPRGCQCLLMSAT 221 (605)
Q Consensus 208 ~lp~~~q~il~SAT 221 (605)
.+|+++++||+.-.
T Consensus 288 al~~~~rlIlvGD~ 301 (615)
T PRK10875 288 ALPPHARVIFLGDR 301 (615)
T ss_pred hcccCCEEEEecch
Confidence 99999999997654
No 189
>PF13245 AAA_19: Part of AAA domain
Probab=97.41 E-value=0.00068 Score=54.99 Aligned_cols=60 Identities=23% Similarity=0.377 Sum_probs=40.6
Q ss_pred HHHHHhCCCc-EEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHH
Q 007402 56 SIPLILEGKD-VVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEV 119 (605)
Q Consensus 56 aIp~~l~gkd-vlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~ 119 (605)
||..++.+.. +++.||+|||||...+--+.. ++... ...+.++|+++||+..+..+.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~-l~~~~---~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAE-LLAAR---ADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHH-HHHHh---cCCCCeEEEECCCHHHHHHHHHHH
Confidence 4554555444 556999999999664443433 43211 112667999999999999988877
No 190
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=97.40 E-value=0.0065 Score=67.62 Aligned_cols=105 Identities=20% Similarity=0.237 Sum_probs=84.2
Q ss_pred CCeEEEEecchhHHHHHHHHHHHcCC------------------cEEEEcCCCCHHHHHHHHHHHHcC--CC-cEEEEcC
Q 007402 283 QKKALIFTNTIDMAFRLKLFLEKFGI------------------KSAILNAELPQNSRLHILEEFNAG--LF-DYLIATD 341 (605)
Q Consensus 283 ~~k~IIFv~s~~~~~~L~~~L~~~gi------------------~~~~l~~~l~~~~R~~i~~~F~~g--~~-~iLIaTd 341 (605)
+.++|||..+......+..+|....+ ...-+.|-.+...|...+.+||.- -. -+|++|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 45899999999888889999976532 233577888999999999999973 22 4677776
Q ss_pred CCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCccEEEEe
Q 007402 342 DTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLV 420 (605)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~~v 420 (605)
... -||++-..+-+|.||.-|++.--.|.+-|+-|.|+..-|+++-
T Consensus 799 ag~---------------------------------lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYR 844 (1387)
T KOG1016|consen 799 AGS---------------------------------LGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYR 844 (1387)
T ss_pred ccc---------------------------------ccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEe
Confidence 543 4999998889999999999999999999999999977776553
No 191
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.30 E-value=0.0014 Score=73.85 Aligned_cols=152 Identities=16% Similarity=0.201 Sum_probs=82.6
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHHh-cCCc-ceEEEEEeCCCC
Q 007402 65 DVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELC-KGQV-QLKVVQLTSSMP 142 (605)
Q Consensus 65 dvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~-~~~~-~i~v~~l~~~~~ 142 (605)
++=|.+.||+|||.+|+-.+.+.--+ -.-.+-||+|||.+.-.-+...+.....++ +... +.+.-.+.-+..
T Consensus 76 NiDI~METGTGKTy~YlrtmfeLhk~------YG~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~~ 149 (985)
T COG3587 76 NIDILMETGTGKTYTYLRTMFELHKK------YGLFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDED 149 (985)
T ss_pred eeeEEEecCCCceeeHHHHHHHHHHH------hCceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeechH
Confidence 56789999999999998777653222 124569999999987666555544443333 2111 122222222222
Q ss_pred HHHHHHHHcCCCcEEEECCchHHHH------HhcCCCCC-c------cc---CCC-ceEEEEeCcchhccCCcHHHHHHH
Q 007402 143 ASDLRAALAGPPDIVIATPGCMPKC------LSTGVLQS-K------SF---SDS-LKILVLDEADLLLSYGYEDDLKAL 205 (605)
Q Consensus 143 ~~~~~~~l~~~~dIvV~TP~~l~~~------l~~~~~~~-~------~~---l~~-l~~lViDEad~i~~~g~~~~l~~i 205 (605)
.....-.-.+.|.|++.|-+....- +....... . .. +.. =-++||||-|+|... ...+.++
T Consensus 150 ~~~~~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~--~k~~~~i 227 (985)
T COG3587 150 IEKFKFKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVIVDEPHRFLGD--DKTYGAI 227 (985)
T ss_pred HHHHhhccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCEEEecChhhcccc--hHHHHHH
Confidence 2222223346788888886543221 11111000 0 00 111 137999999999874 2333334
Q ss_pred HhhCCCCceE-EEEeeecChhHH
Q 007402 206 SAVIPRGCQC-LLMSATSSSDVD 227 (605)
Q Consensus 206 ~~~lp~~~q~-il~SATl~~~v~ 227 (605)
...- +|+ +=+|||.+++..
T Consensus 228 ~~l~---pl~ilRfgATfkd~y~ 247 (985)
T COG3587 228 KQLN---PLLILRFGATFKDEYN 247 (985)
T ss_pred HhhC---ceEEEEecccchhhhc
Confidence 3333 344 448999987764
No 192
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.01 E-value=0.0021 Score=66.47 Aligned_cols=125 Identities=23% Similarity=0.156 Sum_probs=76.8
Q ss_pred ChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHHhcC
Q 007402 49 PTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKG 128 (605)
Q Consensus 49 pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~ 128 (605)
+|+-|.++|.. ....++|.|..|||||.+.+--++..+.... ....++|++++|+..+..+.+.+...+.....
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~----~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~ 74 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG----VPPERILVLTFTNAAAQEMRERIRELLEEEQQ 74 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS----STGGGEEEEESSHHHHHHHHHHHHHHHHHCCH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc----CChHHheecccCHHHHHHHHHHHHHhcCcccc
Confidence 47889999987 6778999999999999987776666555431 33567999999999999999999887654210
Q ss_pred CcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcc
Q 007402 129 QVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 191 (605)
Q Consensus 129 ~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad 191 (605)
.................+.|+|-..+...+-..... ..--.-.+-++|+.+
T Consensus 75 ----------~~~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~--~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 75 ----------ESSDNERLRRQLSNIDRIYISTFHSFCYRLLREYGY--EIGIDPNFEILDEEE 125 (315)
T ss_dssp ----------CCTT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHG--GTTSHTTTEEECHHH
T ss_pred ----------cccccccccccccccchheeehhhhhhhhhhhhhhh--hhhccccceeecchh
Confidence 001111222223334567888877665533221100 000112456777776
No 193
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.99 E-value=0.0094 Score=70.63 Aligned_cols=126 Identities=16% Similarity=0.203 Sum_probs=77.8
Q ss_pred CCCCCChHHHHHHHHHHhCCCc-EEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHH
Q 007402 44 KGIQKPTLIQQASIPLILEGKD-VVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMAL 122 (605)
Q Consensus 44 ~g~~~pt~iQ~~aIp~~l~gkd-vlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l 122 (605)
.|+ .+++-|.+||..++.+++ +++.+..|+|||.+ +-.+.+ +.. ..+.+++.++||---+..+.+.
T Consensus 343 ~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~-~~e------~~G~~V~~~ApTGkAA~~L~e~---- 409 (988)
T PRK13889 343 RGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVARE-AWE------AAGYEVRGAALSGIAAENLEGG---- 409 (988)
T ss_pred cCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHH-HHH------HcCCeEEEecCcHHHHHHHhhc----
Confidence 454 689999999999999765 68999999999975 333333 333 2367799999987655433210
Q ss_pred HHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCcHHHH
Q 007402 123 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 202 (605)
Q Consensus 123 ~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~~~l 202 (605)
. ++.. .|-.+++.....+ ...+...++||||||-.+. ...+
T Consensus 410 ---t----Gi~a------------------------~TI~sll~~~~~~----~~~l~~~~vlIVDEASMv~----~~~m 450 (988)
T PRK13889 410 ---S----GIAS------------------------RTIASLEHGWGQG----RDLLTSRDVLVIDEAGMVG----TRQL 450 (988)
T ss_pred ---c----Ccch------------------------hhHHHHHhhhccc----ccccccCcEEEEECcccCC----HHHH
Confidence 0 1110 0111111111111 1334567899999998664 3456
Q ss_pred HHHHhhC-CCCceEEEEeee
Q 007402 203 KALSAVI-PRGCQCLLMSAT 221 (605)
Q Consensus 203 ~~i~~~l-p~~~q~il~SAT 221 (605)
..++... +.+.++||+.-+
T Consensus 451 ~~LL~~a~~~garvVLVGD~ 470 (988)
T PRK13889 451 ERVLSHAADAGAKVVLVGDP 470 (988)
T ss_pred HHHHHhhhhCCCEEEEECCH
Confidence 6666644 567888887655
No 194
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.97 E-value=0.012 Score=68.37 Aligned_cols=136 Identities=14% Similarity=0.189 Sum_probs=79.9
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHhCC-CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHH
Q 007402 33 LDLRLVHALNKKGIQKPTLIQQASIPLILEG-KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTREL 111 (605)
Q Consensus 33 L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~g-kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreL 111 (605)
.++..+...-..++ .+++-|.+|+..++.+ +-+++.+++|+|||.. +-.+..++. ..+..+++++||---
T Consensus 338 ~~~~~~~~~l~~~~-~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl--l~~i~~~~~------~~g~~V~~~ApTg~A 408 (744)
T TIGR02768 338 VSPPIVDAAIDQHY-RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM--LKAAREAWE------AAGYRVIGAALSGKA 408 (744)
T ss_pred CCHHHHHHHHhccC-CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH--HHHHHHHHH------hCCCeEEEEeCcHHH
Confidence 45544444333444 5899999999999885 5678999999999974 333333333 226779999999665
Q ss_pred HHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcc
Q 007402 112 CQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 191 (605)
Q Consensus 112 a~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad 191 (605)
+..+.+. . ++... |-.+++.....+ ...+...++||||||-
T Consensus 409 a~~L~~~-------~----g~~a~------------------------Ti~~~~~~~~~~----~~~~~~~~llIvDEas 449 (744)
T TIGR02768 409 AEGLQAE-------S----GIESR------------------------TLASLEYAWANG----RDLLSDKDVLVIDEAG 449 (744)
T ss_pred HHHHHhc-------c----CCcee------------------------eHHHHHhhhccC----cccCCCCcEEEEECcc
Confidence 5544321 0 12111 111111111111 1234567899999998
Q ss_pred hhccCCcHHHHHHHHhh-CCCCceEEEEee
Q 007402 192 LLLSYGYEDDLKALSAV-IPRGCQCLLMSA 220 (605)
Q Consensus 192 ~i~~~g~~~~l~~i~~~-lp~~~q~il~SA 220 (605)
.+-. ..+..++.. .+.+.++||+.-
T Consensus 450 Mv~~----~~~~~Ll~~~~~~~~kliLVGD 475 (744)
T TIGR02768 450 MVGS----RQMARVLKEAEEAGAKVVLVGD 475 (744)
T ss_pred cCCH----HHHHHHHHHHHhcCCEEEEECC
Confidence 7653 345555553 335777887763
No 195
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=96.87 E-value=0.0022 Score=64.05 Aligned_cols=87 Identities=24% Similarity=0.263 Sum_probs=65.7
Q ss_pred CCCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCC-CHHHHHHHHc-CCCcEEEECCchHHHHHhcCCCC
Q 007402 97 KLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSM-PASDLRAALA-GPPDIVIATPGCMPKCLSTGVLQ 174 (605)
Q Consensus 97 ~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~-~~~~~~~~l~-~~~dIvV~TP~~l~~~l~~~~~~ 174 (605)
...|.+|||+.+---|-.+.+.+..+. +. +..|+-+++.. ..+++...+. ...+|.||||+|+..++..+.
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~---~k--~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~-- 196 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFK---GK--DCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGA-- 196 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhc---cC--CchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCC--
Confidence 446889999998776777766666552 11 34555566554 6677777777 478999999999999998875
Q ss_pred CcccCCCceEEEEeCcch
Q 007402 175 SKSFSDSLKILVLDEADL 192 (605)
Q Consensus 175 ~~~~l~~l~~lViDEad~ 192 (605)
+.++++.+||||--|+
T Consensus 197 --L~l~~l~~ivlD~s~~ 212 (252)
T PF14617_consen 197 --LSLSNLKRIVLDWSYL 212 (252)
T ss_pred --CCcccCeEEEEcCCcc
Confidence 7889999999997553
No 196
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=96.87 E-value=0.0057 Score=70.00 Aligned_cols=136 Identities=16% Similarity=0.142 Sum_probs=84.5
Q ss_pred CCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCc-EEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcH
Q 007402 31 LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKD-VVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTR 109 (605)
Q Consensus 31 ~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkd-vlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtr 109 (605)
..++|.+... -+..+...|++|+-.++..+| .+|.|-+|+|||..... +-+++. ..+.++|+.+=|-
T Consensus 656 ~~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~--LIkiL~------~~gkkVLLtsyTh 723 (1100)
T KOG1805|consen 656 KVLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISL--LIKILV------ALGKKVLLTSYTH 723 (1100)
T ss_pred cccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHH--HHHHHH------HcCCeEEEEehhh
Confidence 3455555543 234678899999999999987 78999999999985433 223332 1266788888876
Q ss_pred HHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHH-----------------HHHHcCCCcEEEECCchHHHHHhcCC
Q 007402 110 ELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL-----------------RAALAGPPDIVIATPGCMPKCLSTGV 172 (605)
Q Consensus 110 eLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~-----------------~~~l~~~~dIvV~TP~~l~~~l~~~~ 172 (605)
.-+..+.-.+..+ ++.+..+......... ...+-+.+.||.+|-=-+.+-
T Consensus 724 sAVDNILiKL~~~--------~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~p----- 790 (1100)
T KOG1805|consen 724 SAVDNILIKLKGF--------GIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHP----- 790 (1100)
T ss_pred HHHHHHHHHHhcc--------CcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCch-----
Confidence 6555554444332 4555544433322111 112336789999993222222
Q ss_pred CCCcccCCCceEEEEeCcchhc
Q 007402 173 LQSKSFSDSLKILVLDEADLLL 194 (605)
Q Consensus 173 ~~~~~~l~~l~~lViDEad~i~ 194 (605)
......+++.|||||-.|+
T Consensus 791 ---lf~~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 791 ---LFVNRQFDYCIIDEASQIL 809 (1100)
T ss_pred ---hhhccccCEEEEccccccc
Confidence 2334569999999998765
No 197
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.80 E-value=0.0036 Score=55.92 Aligned_cols=18 Identities=33% Similarity=0.355 Sum_probs=12.6
Q ss_pred CCcEEEEcCCCchHHHHH
Q 007402 63 GKDVVARAKTGSGKTFAY 80 (605)
Q Consensus 63 gkdvlv~a~TGsGKT~a~ 80 (605)
++-+++.|++|+|||.+.
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 456899999999999854
No 198
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=96.77 E-value=0.0045 Score=70.19 Aligned_cols=39 Identities=26% Similarity=0.364 Sum_probs=31.7
Q ss_pred CChHHHHHHHHHHhCC----CcEEEEcCCCchHHHHHHHHHHH
Q 007402 48 KPTLIQQASIPLILEG----KDVVARAKTGSGKTFAYLLPLLH 86 (605)
Q Consensus 48 ~pt~iQ~~aIp~~l~g----kdvlv~a~TGsGKT~a~~lpil~ 86 (605)
+|++.|...+..++.. .+.++..|||+|||++.+-..+.
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LA 63 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLA 63 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHH
Confidence 6899999888777654 68999999999999987655543
No 199
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.54 E-value=0.038 Score=66.05 Aligned_cols=140 Identities=13% Similarity=0.148 Sum_probs=86.0
Q ss_pred cCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCC-CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCc
Q 007402 30 ELGLDLRLVHALNKKGIQKPTLIQQASIPLILEG-KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPT 108 (605)
Q Consensus 30 ~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~g-kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPt 108 (605)
..++++..+.+....++ .+++-|.+|+..+..+ +-+++.++.|+|||.+. -++.+ +.. ..+.+++.++||
T Consensus 364 ~~~v~~~~l~a~~~~~~-~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l-~~~~~-~~e------~~G~~V~g~ApT 434 (1102)
T PRK13826 364 SHGVREAVLAATFARHA-RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMM-KAARE-AWE------AAGYRVVGGALA 434 (1102)
T ss_pred CCCCCHHHHHHHHhcCC-CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHH-HHHHH-HHH------HcCCeEEEEcCc
Confidence 34566777766555554 6899999999987654 55889999999999742 33333 333 236779999998
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEe
Q 007402 109 RELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLD 188 (605)
Q Consensus 109 reLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViD 188 (605)
---+..+.+ -. ++....+ .+++.....+ ...+..-.+||||
T Consensus 435 gkAA~~L~e----~~-------Gi~a~TI------------------------as~ll~~~~~----~~~l~~~~vlVID 475 (1102)
T PRK13826 435 GKAAEGLEK----EA-------GIQSRTL------------------------SSWELRWNQG----RDQLDNKTVFVLD 475 (1102)
T ss_pred HHHHHHHHH----hh-------CCCeeeH------------------------HHHHhhhccC----ccCCCCCcEEEEE
Confidence 655443322 11 2222111 1110000111 1334556799999
Q ss_pred CcchhccCCcHHHHHHHHhhCC-CCceEEEEeee
Q 007402 189 EADLLLSYGYEDDLKALSAVIP-RGCQCLLMSAT 221 (605)
Q Consensus 189 Ead~i~~~g~~~~l~~i~~~lp-~~~q~il~SAT 221 (605)
||-.+- ..++..++...+ .+.+++|+.-+
T Consensus 476 EAsMv~----~~~m~~Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 476 EAGMVA----SRQMALFVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred CcccCC----HHHHHHHHHHHHhcCCEEEEECCH
Confidence 998664 456667777665 57888887755
No 200
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.36 E-value=0.0078 Score=62.26 Aligned_cols=149 Identities=21% Similarity=0.254 Sum_probs=82.3
Q ss_pred CCCCCChHHHHHHHHHHhCC--CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHH------
Q 007402 44 KGIQKPTLIQQASIPLILEG--KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQV------ 115 (605)
Q Consensus 44 ~g~~~pt~iQ~~aIp~~l~g--kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv------ 115 (605)
.|+..-.-.|.-|+.+++.- +=|.+.++.|||||+.++-..++..+..+. -.++||.=|+..+-+.+
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~-----y~KiiVtRp~vpvG~dIGfLPG~ 298 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKR-----YRKIIVTRPTVPVGEDIGFLPGT 298 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhh-----hceEEEecCCcCcccccCcCCCc
Confidence 47766677888888888765 347789999999999888888887776432 34466655664433211
Q ss_pred -----HHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHc-CCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeC
Q 007402 116 -----YSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALA-GPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDE 189 (605)
Q Consensus 116 -----~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~-~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDE 189 (605)
.-++..++..+.. +....-.| .......+. ...++---| +++-.+++ =.++||||
T Consensus 299 eEeKm~PWmq~i~DnLE~---L~~~~~~~---~~~l~~~l~~~~iev~alt------~IRGRSl~-------~~FiIIDE 359 (436)
T COG1875 299 EEEKMGPWMQAIFDNLEV---LFSPNEPG---DRALEEILSRGRIEVEALT------YIRGRSLP-------DSFIIIDE 359 (436)
T ss_pred hhhhccchHHHHHhHHHH---Hhcccccc---hHHHHHHHhccceeeeeee------eecccccc-------cceEEEeh
Confidence 1111111110000 00000000 111111111 111221111 22222111 24899999
Q ss_pred cchhccCCcHHHHHHHHhhCCCCceEEEEee
Q 007402 190 ADLLLSYGYEDDLKALSAVIPRGCQCLLMSA 220 (605)
Q Consensus 190 ad~i~~~g~~~~l~~i~~~lp~~~q~il~SA 220 (605)
|+.+- ...++.|+.....+..++|+.-
T Consensus 360 aQNLT----pheikTiltR~G~GsKIVl~gd 386 (436)
T COG1875 360 AQNLT----PHELKTILTRAGEGSKIVLTGD 386 (436)
T ss_pred hhccC----HHHHHHHHHhccCCCEEEEcCC
Confidence 99875 6789999999999999987653
No 201
>PRK08181 transposase; Validated
Probab=96.27 E-value=0.063 Score=54.63 Aligned_cols=46 Identities=13% Similarity=0.107 Sum_probs=27.0
Q ss_pred CceEEEEeCcchhccCCc-HHHHHHHHhhCCCCceEEEEeeecChhH
Q 007402 181 SLKILVLDEADLLLSYGY-EDDLKALSAVIPRGCQCLLMSATSSSDV 226 (605)
Q Consensus 181 ~l~~lViDEad~i~~~g~-~~~l~~i~~~lp~~~q~il~SATl~~~v 226 (605)
+.++|||||.+.+..... ...+..++...-....+|+.|-..+.+.
T Consensus 167 ~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~~~~w 213 (269)
T PRK08181 167 KFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQPFGEW 213 (269)
T ss_pred cCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCCHHHH
Confidence 467999999987654322 2355666654433445666555544433
No 202
>PRK06921 hypothetical protein; Provisional
Probab=96.25 E-value=0.068 Score=54.38 Aligned_cols=46 Identities=20% Similarity=0.241 Sum_probs=27.1
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHH
Q 007402 62 EGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQV 115 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv 115 (605)
.+..+++.|++|+|||... ..+...+... .+..++++ +..+|..++
T Consensus 116 ~~~~l~l~G~~G~GKThLa-~aia~~l~~~------~g~~v~y~-~~~~l~~~l 161 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLL-TAAANELMRK------KGVPVLYF-PFVEGFGDL 161 (266)
T ss_pred CCCeEEEECCCCCcHHHHH-HHHHHHHhhh------cCceEEEE-EHHHHHHHH
Confidence 3578999999999999632 3344444331 13445554 444554443
No 203
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.21 E-value=0.072 Score=47.53 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCchHHHH
Q 007402 63 GKDVVARAKTGSGKTFA 79 (605)
Q Consensus 63 gkdvlv~a~TGsGKT~a 79 (605)
++.+++.|++|+|||..
T Consensus 19 ~~~v~i~G~~G~GKT~l 35 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL 35 (151)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 57899999999999963
No 204
>PRK04296 thymidine kinase; Provisional
Probab=96.18 E-value=0.01 Score=57.19 Aligned_cols=36 Identities=22% Similarity=0.104 Sum_probs=24.2
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcC
Q 007402 64 KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVP 107 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvP 107 (605)
.=.++.+++|+|||.+.+- ++.++.. .+.+++|+-|
T Consensus 3 ~i~litG~~GsGKTT~~l~-~~~~~~~-------~g~~v~i~k~ 38 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQ-RAYNYEE-------RGMKVLVFKP 38 (190)
T ss_pred EEEEEECCCCCHHHHHHHH-HHHHHHH-------cCCeEEEEec
Confidence 3468999999999975443 3444433 2566888866
No 205
>PRK14974 cell division protein FtsY; Provisional
Probab=96.17 E-value=0.078 Score=55.64 Aligned_cols=53 Identities=15% Similarity=0.226 Sum_probs=37.5
Q ss_pred CceEEEEeCcchhcc-CCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHh
Q 007402 181 SLKILVLDEADLLLS-YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLI 233 (605)
Q Consensus 181 ~l~~lViDEad~i~~-~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~ 233 (605)
..++|+||.|.++.. ..+-..+..+...+.+..-++.++||...+.......|
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f 275 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREF 275 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHH
Confidence 467999999998753 34556677777767667778888998876655444444
No 206
>PRK06526 transposase; Provisional
Probab=95.98 E-value=0.06 Score=54.34 Aligned_cols=64 Identities=11% Similarity=0.118 Sum_probs=36.3
Q ss_pred CceEEEEeCcchhccCCc-HHHHHHHHhhCCCCceEEEEeeecChhHH----------HHHHHhcCCCeEEEcCC
Q 007402 181 SLKILVLDEADLLLSYGY-EDDLKALSAVIPRGCQCLLMSATSSSDVD----------KLKKLILHNPYILTLPE 244 (605)
Q Consensus 181 ~l~~lViDEad~i~~~g~-~~~l~~i~~~lp~~~q~il~SATl~~~v~----------~l~~~~l~~p~~i~l~~ 244 (605)
..++|||||+|.+..... ...+..++...-....+|+.|........ .+....+++..++.+..
T Consensus 159 ~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~~w~~~~~d~~~a~ai~dRl~~~~~~i~~~g 233 (254)
T PRK06526 159 RYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFGRWGEVFGDDVVAAAMIDRLVHHAEVISLKG 233 (254)
T ss_pred cCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHHHHHHHcCChHHHHHHHHHHhcCceEEeecC
Confidence 467999999998643222 23455555432223457777776554432 23445566666666544
No 207
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.97 E-value=0.015 Score=58.70 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=18.7
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhh
Q 007402 65 DVVARAKTGSGKTFAYLLPLLHRLFN 90 (605)
Q Consensus 65 dvlv~a~TGsGKT~a~~lpil~~ll~ 90 (605)
=|||.+|||||||.. +-.++.++..
T Consensus 127 LILVTGpTGSGKSTT-lAamId~iN~ 151 (353)
T COG2805 127 LILVTGPTGSGKSTT-LAAMIDYINK 151 (353)
T ss_pred eEEEeCCCCCcHHHH-HHHHHHHHhc
Confidence 389999999999975 3446666654
No 208
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.85 E-value=0.14 Score=46.93 Aligned_cols=44 Identities=16% Similarity=0.288 Sum_probs=25.7
Q ss_pred CCceEEEEeCcchhccCC----------cHHHHHHHHhhCCCCceEEEEeeecC
Q 007402 180 DSLKILVLDEADLLLSYG----------YEDDLKALSAVIPRGCQCLLMSATSS 223 (605)
Q Consensus 180 ~~l~~lViDEad~i~~~g----------~~~~l~~i~~~lp~~~q~il~SATl~ 223 (605)
....++||||.+.+.... ....+..+.........++++....+
T Consensus 84 ~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~ 137 (165)
T cd01120 84 GGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVP 137 (165)
T ss_pred CCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecC
Confidence 457899999999875432 13455555555544334444444433
No 209
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.73 E-value=1 Score=57.96 Aligned_cols=135 Identities=15% Similarity=0.119 Sum_probs=81.4
Q ss_pred CChHHHHHHHHHHhCC--CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHH
Q 007402 48 KPTLIQQASIPLILEG--KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIEL 125 (605)
Q Consensus 48 ~pt~iQ~~aIp~~l~g--kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~ 125 (605)
.+++-|.+|+..++.. +-.++.++.|+|||.+ +-.+..+.. ..+.++++++||-.-+.+..+......
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~--l~~l~~~~~------~~G~~V~~lAPTgrAA~~L~e~~g~~A-- 498 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI--AQLLLHLAS------EQGYEIQIITAGSLSAQELRQKIPRLA-- 498 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH--HHHHHHHHH------hcCCeEEEEeCCHHHHHHHHHHhcchh--
Confidence 5789999999999886 4588999999999974 333333333 236789999999876665554321110
Q ss_pred hcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCcHHHHHHH
Q 007402 126 CKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL 205 (605)
Q Consensus 126 ~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~~~l~~i 205 (605)
. ....+...+. .+ .-..|...++ .. ...+..-++||||||-.+. ..++..|
T Consensus 499 ---------~------Ti~~~l~~l~-~~-~~~~tv~~fl----~~----~~~l~~~~vlIVDEAsMl~----~~~~~~L 549 (1960)
T TIGR02760 499 ---------S------TFITWVKNLF-ND-DQDHTVQGLL----DK----SSPFSNKDIFVVDEANKLS----NNELLKL 549 (1960)
T ss_pred ---------h------hHHHHHHhhc-cc-ccchhHHHhh----cc----cCCCCCCCEEEEECCCCCC----HHHHHHH
Confidence 0 0001111111 11 1112222222 11 1334567899999998664 4567777
Q ss_pred HhhC-CCCceEEEEeee
Q 007402 206 SAVI-PRGCQCLLMSAT 221 (605)
Q Consensus 206 ~~~l-p~~~q~il~SAT 221 (605)
+... +.+.++||+.-+
T Consensus 550 l~~a~~~garvVlvGD~ 566 (1960)
T TIGR02760 550 IDKAEQHNSKLILLNDS 566 (1960)
T ss_pred HHHHhhcCCEEEEEcCh
Confidence 7765 468999988765
No 210
>PRK08116 hypothetical protein; Validated
Probab=95.72 E-value=0.19 Score=51.27 Aligned_cols=42 Identities=17% Similarity=0.338 Sum_probs=26.1
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHH
Q 007402 65 DVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQV 115 (605)
Q Consensus 65 dvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv 115 (605)
.+++.|++|+|||..+ ..+.+.+... +..++ .++..+|...+
T Consensus 116 gl~l~G~~GtGKThLa-~aia~~l~~~-------~~~v~-~~~~~~ll~~i 157 (268)
T PRK08116 116 GLLLWGSVGTGKTYLA-ACIANELIEK-------GVPVI-FVNFPQLLNRI 157 (268)
T ss_pred eEEEECCCCCCHHHHH-HHHHHHHHHc-------CCeEE-EEEHHHHHHHH
Confidence 4999999999999754 3455555542 33344 44555555443
No 211
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=95.68 E-value=0.022 Score=66.98 Aligned_cols=161 Identities=21% Similarity=0.131 Sum_probs=98.2
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhcCC----------CCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcce
Q 007402 63 GKDVVARAKTGSGKTFAYLLPLLHRLFNESS----------PKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQL 132 (605)
Q Consensus 63 gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~----------~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i 132 (605)
|+++++.--.|.|||.+-+...+...-.... .........|||+|. .+..||.+++...+ +. .+
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~---~~--~l 447 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHI---SS--LL 447 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhc---cc--cc
Confidence 5788999999999999876655543221110 001123458999995 66788888877654 33 46
Q ss_pred EEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCC--------------cccCCCce--EEEEeCcchhccC
Q 007402 133 KVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQS--------------KSFSDSLK--ILVLDEADLLLSY 196 (605)
Q Consensus 133 ~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~--------------~~~l~~l~--~lViDEad~i~~~ 196 (605)
.+..+.|-.........-...+|||++|++.|..-+....... ...|-.+. -|++|||+.+-+.
T Consensus 448 Kv~~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvess 527 (1394)
T KOG0298|consen 448 KVLLYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESS 527 (1394)
T ss_pred eEEEEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcch
Confidence 7777776433222111222478999999988876554331100 01111122 2899999987663
Q ss_pred CcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHH
Q 007402 197 GYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKL 232 (605)
Q Consensus 197 g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~ 232 (605)
.......+..++. ..+.+.|+|+-..++.+..+
T Consensus 528 --sS~~a~M~~rL~~-in~W~VTGTPiq~Iddl~~L 560 (1394)
T KOG0298|consen 528 --SSAAAEMVRRLHA-INRWCVTGTPIQKIDDLFPL 560 (1394)
T ss_pred --HHHHHHHHHHhhh-hceeeecCCchhhhhhhHHH
Confidence 5566666777764 56788999975556555443
No 212
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.67 E-value=0.18 Score=53.97 Aligned_cols=54 Identities=17% Similarity=0.151 Sum_probs=32.2
Q ss_pred CCceEEEEeCcchhccCC-cHHHHHHHHhhCCCC-ceEEEEeeecCh-hHHHHHHHh
Q 007402 180 DSLKILVLDEADLLLSYG-YEDDLKALSAVIPRG-CQCLLMSATSSS-DVDKLKKLI 233 (605)
Q Consensus 180 ~~l~~lViDEad~i~~~g-~~~~l~~i~~~lp~~-~q~il~SATl~~-~v~~l~~~~ 233 (605)
.+.++|+||++.+..... .-..+..++...... --.+.+|||... ++......|
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~ 309 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQF 309 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHh
Confidence 457899999999875321 123455555544333 345778999863 344444444
No 213
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.64 E-value=0.03 Score=59.68 Aligned_cols=58 Identities=21% Similarity=0.272 Sum_probs=42.0
Q ss_pred ChHHHHHHHHHH------hCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHH
Q 007402 49 PTLIQQASIPLI------LEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQ 114 (605)
Q Consensus 49 pt~iQ~~aIp~~------l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Q 114 (605)
+++-|+.++..+ .++..+++.++-|+|||. ++-.+...+. ..+..+++++||--=|..
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~--l~~~i~~~~~------~~~~~~~~~a~tg~AA~~ 65 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSF--LIKAIIDYLR------SRGKKVLVTAPTGIAAFN 65 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhH--HHHHHHHHhc------cccceEEEecchHHHHHh
Confidence 467788888877 677899999999999997 4444444443 235679999998654443
No 214
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.63 E-value=0.082 Score=52.04 Aligned_cols=43 Identities=21% Similarity=0.322 Sum_probs=27.0
Q ss_pred ccCcccC--CCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHH
Q 007402 25 EKSFEEL--GLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAY 80 (605)
Q Consensus 25 ~~~f~~~--~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~ 80 (605)
..+|++| +-+..+++++...-. .-.+..+++.|++|+|||...
T Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~-------------~~~~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 11 DPTFDNFYAGGNAELLAALRQLAA-------------GKGDRFLYLWGESGSGKSHLL 55 (226)
T ss_pred chhhcCcCcCCcHHHHHHHHHHHh-------------cCCCCeEEEECCCCCCHHHHH
Confidence 4566666 334455555554311 123468999999999999754
No 215
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=95.61 E-value=0.059 Score=49.31 Aligned_cols=43 Identities=30% Similarity=0.466 Sum_probs=31.9
Q ss_pred HHHHHHHHHHcCCC---cEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCC--ccEEEEeCCC
Q 007402 321 SRLHILEEFNAGLF---DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN--VHTVINFEMP 394 (605)
Q Consensus 321 ~R~~i~~~F~~g~~---~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~--v~~VI~fd~P 394 (605)
+...++++|++..- .||+|+...- +++||||++ +++||...+|
T Consensus 32 ~~~~~l~~f~~~~~~~g~iL~~v~~G~-------------------------------~~EGiD~~g~~~r~vii~glP 79 (142)
T smart00491 32 ETEELLEKYSAACEARGALLLAVARGK-------------------------------VSEGIDFPDDLGRAVIIVGIP 79 (142)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEEeCCe-------------------------------eecceecCCCccEEEEEEecC
Confidence 44678888887543 6999986522 457999996 5789998887
No 216
>PHA02533 17 large terminase protein; Provisional
Probab=95.56 E-value=0.15 Score=56.93 Aligned_cols=73 Identities=16% Similarity=0.134 Sum_probs=56.5
Q ss_pred CChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHHh
Q 007402 48 KPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELC 126 (605)
Q Consensus 48 ~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~ 126 (605)
.|.|+|...+..+..++-.++..+=..|||.+....++...+.. .+..+++++|+.+-|..+.+.++.....+
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~------~~~~v~i~A~~~~QA~~vF~~ik~~ie~~ 131 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN------KDKNVGILAHKASMAAEVLDRTKQAIELL 131 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC------CCCEEEEEeCCHHHHHHHHHHHHHHHHhC
Confidence 47899999998776677778888889999998776555444431 25589999999999999998888766544
No 217
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.41 E-value=0.099 Score=54.70 Aligned_cols=55 Identities=36% Similarity=0.642 Sum_probs=38.2
Q ss_pred cccCcccCCCCHHHHHHHHHC--------CCCCC-------hHHHHHHH-----HHHhCC-----CcEEEEcCCCchHHH
Q 007402 24 EEKSFEELGLDLRLVHALNKK--------GIQKP-------TLIQQASI-----PLILEG-----KDVVARAKTGSGKTF 78 (605)
Q Consensus 24 ~~~~f~~~~L~~~l~~al~~~--------g~~~p-------t~iQ~~aI-----p~~l~g-----kdvlv~a~TGsGKT~ 78 (605)
+...|+.++.+..|.++|..- .|... ...++.++ |...+| |.+|..+|+|+|||+
T Consensus 181 ~~~~f~~~~~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTl 260 (491)
T KOG0738|consen 181 EDKKFDSLGYDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTL 260 (491)
T ss_pred ccCCCCcccchHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHH
Confidence 456799999999999988763 22211 23333332 445566 789999999999997
No 218
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.39 E-value=0.047 Score=48.19 Aligned_cols=18 Identities=33% Similarity=0.418 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCchHHHHH
Q 007402 63 GKDVVARAKTGSGKTFAY 80 (605)
Q Consensus 63 gkdvlv~a~TGsGKT~a~ 80 (605)
+..+++.+|+|+|||...
T Consensus 2 ~~~~~l~G~~G~GKTtl~ 19 (148)
T smart00382 2 GEVILIVGPPGSGKTTLA 19 (148)
T ss_pred CCEEEEECCCCCcHHHHH
Confidence 467899999999999843
No 219
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.38 E-value=0.056 Score=59.18 Aligned_cols=142 Identities=16% Similarity=0.126 Sum_probs=75.8
Q ss_pred EEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHH----------HHhcCCcceEEEEE
Q 007402 68 ARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALI----------ELCKGQVQLKVVQL 137 (605)
Q Consensus 68 v~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~----------~~~~~~~~i~v~~l 137 (605)
..+.||||||++..-.|++..-.+ -...|+.|..-...+.+...+..-. .+.+....|+-+.-
T Consensus 2 f~matgsgkt~~ma~lil~~y~kg-------yr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~ 74 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKG-------YRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNN 74 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhc-------hhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecc
Confidence 468999999998877777765442 2336777776555554443332110 11111111222221
Q ss_pred eCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCccc---CCCce-EEEEeCcchhccCC---------cHHHHHH
Q 007402 138 TSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSF---SDSLK-ILVLDEADLLLSYG---------YEDDLKA 204 (605)
Q Consensus 138 ~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~---l~~l~-~lViDEad~i~~~g---------~~~~l~~ 204 (605)
.+. ..+...|+.+|.+.|...+.+... +... +.+.. +++-||||++-+.. -...++.
T Consensus 75 fse---------hnd~iei~fttiq~l~~d~~~~ke-n~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~ 144 (812)
T COG3421 75 FSE---------HNDAIEIYFTTIQGLFSDFTRAKE-NAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWES 144 (812)
T ss_pred cCc---------cCCceEEEEeehHHHHHHHHhhcc-ccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHH
Confidence 111 345678999999998777654331 2233 33344 45679999986432 0111222
Q ss_pred HHhh-C--CCCceEEEEeeecChhH
Q 007402 205 LSAV-I--PRGCQCLLMSATSSSDV 226 (605)
Q Consensus 205 i~~~-l--p~~~q~il~SATl~~~v 226 (605)
.+.. + .++--++.+|||.+.+-
T Consensus 145 ~v~la~~~nkd~~~lef~at~~k~k 169 (812)
T COG3421 145 VVKLALEQNKDNLLLEFSATIPKEK 169 (812)
T ss_pred HHHHHHhcCCCceeehhhhcCCccc
Confidence 2211 1 12344566899998543
No 220
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=95.34 E-value=0.11 Score=56.24 Aligned_cols=32 Identities=22% Similarity=0.382 Sum_probs=26.3
Q ss_pred ChHHHHHHHHHHhCCCcEEEEcCCCchHHHHH
Q 007402 49 PTLIQQASIPLILEGKDVVARAKTGSGKTFAY 80 (605)
Q Consensus 49 pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~ 80 (605)
|-......+..+..++++++.+++|+|||..+
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA 211 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVA 211 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHH
Confidence 45566667777788999999999999999754
No 221
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.31 E-value=0.33 Score=50.89 Aligned_cols=60 Identities=17% Similarity=0.241 Sum_probs=35.1
Q ss_pred CChHHHHHHHHHHh--------CCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHH
Q 007402 48 KPTLIQQASIPLIL--------EGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVY 116 (605)
Q Consensus 48 ~pt~iQ~~aIp~~l--------~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~ 116 (605)
.|...+..++..+. .++.+++.|+||+|||... ..+...++.. +..+++ ++..+|..+..
T Consensus 160 ~~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa-~aIa~~l~~~-------g~~V~y-~t~~~l~~~l~ 227 (329)
T PRK06835 160 SPRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLS-NCIAKELLDR-------GKSVIY-RTADELIEILR 227 (329)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHH-HHHHHHHHHC-------CCeEEE-EEHHHHHHHHH
Confidence 34455555554332 3578999999999999733 3344445442 344544 45556655443
No 222
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.28 E-value=0.13 Score=53.70 Aligned_cols=69 Identities=19% Similarity=0.288 Sum_probs=46.0
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHH-hCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHH
Q 007402 35 LRLVHALNKKGIQKPTLIQQASIPLI-LEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTREL 111 (605)
Q Consensus 35 ~~l~~al~~~g~~~pt~iQ~~aIp~~-l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreL 111 (605)
..-+..|...|+ +++.|.+.+..+ ..++++++.|+||||||. ++-.++..+... .+..+++++-.+.||
T Consensus 121 ~~tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTT-ll~aL~~~~~~~-----~~~~rivtIEd~~El 190 (319)
T PRK13894 121 IFTLDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTT-LVNAIINEMVIQ-----DPTERVFIIEDTGEI 190 (319)
T ss_pred CCCHHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHhhhhc-----CCCceEEEEcCCCcc
Confidence 334556666676 456777777654 456899999999999994 445555544321 224567777787776
No 223
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=95.23 E-value=0.13 Score=47.06 Aligned_cols=45 Identities=24% Similarity=0.345 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHHHHcCC-CcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCC--ccEEEEeCC
Q 007402 317 LPQNSRLHILEEFNAGL-FDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN--VHTVINFEM 393 (605)
Q Consensus 317 l~~~~R~~i~~~F~~g~-~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~--v~~VI~fd~ 393 (605)
....+...++++|.... -.||++|.. +++||||++ +.+||...+
T Consensus 31 ~~~~~~~~~l~~f~~~~~~~iL~~~~~---------------------------------~~EGiD~~g~~~r~vii~gl 77 (141)
T smart00492 31 EDGKETGKLLEKYVEACENAILLATAR---------------------------------FSEGVDFPGDYLRAVIIDGL 77 (141)
T ss_pred CChhHHHHHHHHHHHcCCCEEEEEccc---------------------------------eecceecCCCCeeEEEEEec
Confidence 33445677888898754 379999865 457999996 467988887
Q ss_pred C
Q 007402 394 P 394 (605)
Q Consensus 394 P 394 (605)
|
T Consensus 78 P 78 (141)
T smart00492 78 P 78 (141)
T ss_pred C
Confidence 7
No 224
>PF13871 Helicase_C_4: Helicase_C-like
Probab=95.19 E-value=0.073 Score=54.03 Aligned_cols=65 Identities=23% Similarity=0.342 Sum_probs=50.1
Q ss_pred HHHHHHHcCCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccC--------CccEEEEeCCCC
Q 007402 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK--------NVHTVINFEMPQ 395 (605)
Q Consensus 324 ~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~--------~v~~VI~fd~P~ 395 (605)
...+.|+.|+.+|+|.|+.+. .||-+. .-.+-|...+||
T Consensus 52 ~e~~~F~~g~k~v~iis~Ags---------------------------------tGiSlHAd~~~~nqr~Rv~i~le~pw 98 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGS---------------------------------TGISLHADRRVKNQRRRVHITLELPW 98 (278)
T ss_pred HHHHHHhCCCceEEEEecccc---------------------------------cccchhccccCCCCCceEEEEeeCCC
Confidence 556799999999999998765 244443 445678899999
Q ss_pred CchhHHHhhcccccCCCC-ccEEEEeC
Q 007402 396 NAAGYVHRIGRTGRAYNT-GASVSLVS 421 (605)
Q Consensus 396 s~~~yiqRiGRtgR~g~~-G~ai~~v~ 421 (605)
|+...+|..||+.|.|+. .--+.++.
T Consensus 99 sad~aiQ~~GR~hRsnQ~~~P~y~~l~ 125 (278)
T PF13871_consen 99 SADKAIQQFGRTHRSNQVSAPEYRFLV 125 (278)
T ss_pred CHHHHHHHhccccccccccCCEEEEee
Confidence 999999999999999983 33344443
No 225
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.11 E-value=0.31 Score=55.88 Aligned_cols=157 Identities=20% Similarity=0.155 Sum_probs=98.0
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHhCCC--cEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHH
Q 007402 33 LDLRLVHALNKKGIQKPTLIQQASIPLILEGK--DVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRE 110 (605)
Q Consensus 33 L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gk--dvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtre 110 (605)
+++-.-..+..+..+.+..-|.+.+..+++++ -+++.|.=|-|||++..|.+...... ....+++|..|+.+
T Consensus 199 ~~~~~~~~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~------~~~~~iiVTAP~~~ 272 (758)
T COG1444 199 LDPVFPRELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARL------AGSVRIIVTAPTPA 272 (758)
T ss_pred CCCCCCHHHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHh------cCCceEEEeCCCHH
Confidence 33333445667777777777777888777764 58899999999999988777332221 11457999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCc
Q 007402 111 LCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEA 190 (605)
Q Consensus 111 La~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEa 190 (605)
=++.+.+.+..-+...+- ...+..-..+. ..........|=+.+|.... ..-++||||||
T Consensus 273 nv~~Lf~fa~~~l~~lg~--~~~v~~d~~g~----~~~~~~~~~~i~y~~P~~a~--------------~~~DllvVDEA 332 (758)
T COG1444 273 NVQTLFEFAGKGLEFLGY--KRKVAPDALGE----IREVSGDGFRIEYVPPDDAQ--------------EEADLLVVDEA 332 (758)
T ss_pred HHHHHHHHHHHhHHHhCC--ccccccccccc----eeeecCCceeEEeeCcchhc--------------ccCCEEEEehh
Confidence 999888887776666532 11111100000 00000112224445554332 11568999999
Q ss_pred chhccCCcHHHHHHHHhhCCCCceEEEEeeecC
Q 007402 191 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSS 223 (605)
Q Consensus 191 d~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~ 223 (605)
=.|- -+.+..++...+ .++||.|+.
T Consensus 333 AaIp----lplL~~l~~~~~----rv~~sTTIh 357 (758)
T COG1444 333 AAIP----LPLLHKLLRRFP----RVLFSTTIH 357 (758)
T ss_pred hcCC----hHHHHHHHhhcC----ceEEEeeec
Confidence 7663 566777777654 588999975
No 226
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=95.10 E-value=0.07 Score=60.92 Aligned_cols=148 Identities=17% Similarity=0.212 Sum_probs=82.6
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhcCCC-CCCCCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCC
Q 007402 64 KDVVARAKTGSGKTFAYLLPLLHRLFNESSP-KSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMP 142 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~-~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~ 142 (605)
+-.|+.-.-|-|||..-+..++..=...... ........||+||+ .+..||..++.+... ...+.+..++|...
T Consensus 153 ~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~-s~~~qW~~elek~~~----~~~l~v~v~~gr~k 227 (674)
T KOG1001|consen 153 RGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPT-SLLTQWKTELEKVTE----EDKLSIYVYHGRTK 227 (674)
T ss_pred ccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecch-HHHHHHHHHHhccCC----ccceEEEEeccccc
Confidence 3578888999999987544443321111100 01235568888886 566778877744432 12566777776111
Q ss_pred HHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeec
Q 007402 143 ASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATS 222 (605)
Q Consensus 143 ~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl 222 (605)
. .. ....+|||++||+.+.. .. +..-.+-.+|+||||.+.... ......+..+...++-. +|+|+
T Consensus 228 d---~~-el~~~dVVltTy~il~~----~~----l~~i~w~Riildea~~ikn~~--tq~~~a~~~L~a~~RWc-LtgtP 292 (674)
T KOG1001|consen 228 D---KS-ELNSYDVVLTTYDILKN----SP----LVKIKWLRIVLDEAHTIKNKD--TQIFKAVCQLDAKYRWC-LTGTP 292 (674)
T ss_pred c---cc-hhcCCceEEeeHHHhhc----cc----ccceeEEEEEeccccccCCcc--hHhhhhheeeccceeee-ecCCh
Confidence 1 11 22468899999877753 11 222234579999999987663 22333333343344443 45554
Q ss_pred C-hhHHHHHH
Q 007402 223 S-SDVDKLKK 231 (605)
Q Consensus 223 ~-~~v~~l~~ 231 (605)
. ..++.+..
T Consensus 293 iqn~~~~lys 302 (674)
T KOG1001|consen 293 IQNNLDELYS 302 (674)
T ss_pred hhhhHHHHHH
Confidence 3 33444443
No 227
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.09 E-value=0.47 Score=50.49 Aligned_cols=131 Identities=17% Similarity=0.183 Sum_probs=72.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCC
Q 007402 63 GKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMP 142 (605)
Q Consensus 63 gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~ 142 (605)
++-+.+.||||.|||....-.+....+.. .....+||-+-|--..- +++++.++..+ ++.+.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~-----~~~kVaiITtDtYRIGA--~EQLk~Ya~im----~vp~~------- 264 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLK-----KKKKVAIITTDTYRIGA--VEQLKTYADIM----GVPLE------- 264 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhc-----cCcceEEEEeccchhhH--HHHHHHHHHHh----CCceE-------
Confidence 67789999999999997655555544221 22445777776654332 34455555444 33333
Q ss_pred HHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhcc-CCcHHHHHHHHhhCCCCceEEEEeee
Q 007402 143 ASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLS-YGYEDDLKALSAVIPRGCQCLLMSAT 221 (605)
Q Consensus 143 ~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~-~g~~~~l~~i~~~lp~~~q~il~SAT 221 (605)
+|-+|.-+...+. .+.+.++|.||=|-+-.. .-....+..+.......--.+.+|||
T Consensus 265 --------------vv~~~~el~~ai~--------~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat 322 (407)
T COG1419 265 --------------VVYSPKELAEAIE--------ALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSAT 322 (407)
T ss_pred --------------EecCHHHHHHHHH--------HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecC
Confidence 3334444443332 223446666665543211 11345566666655444556778888
Q ss_pred cC-hhHHHHHHHh
Q 007402 222 SS-SDVDKLKKLI 233 (605)
Q Consensus 222 l~-~~v~~l~~~~ 233 (605)
.. .++..+...|
T Consensus 323 ~K~~dlkei~~~f 335 (407)
T COG1419 323 TKYEDLKEIIKQF 335 (407)
T ss_pred cchHHHHHHHHHh
Confidence 75 3445555554
No 228
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.08 E-value=0.15 Score=63.20 Aligned_cols=128 Identities=23% Similarity=0.291 Sum_probs=75.3
Q ss_pred CChHHHHHHHHHHhCC--CcEEEEcCCCchHHHHH--HHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHH
Q 007402 48 KPTLIQQASIPLILEG--KDVVARAKTGSGKTFAY--LLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALI 123 (605)
Q Consensus 48 ~pt~iQ~~aIp~~l~g--kdvlv~a~TGsGKT~a~--~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~ 123 (605)
.+++-|.+|+..++.+ +-+++.+..|+|||.+. ++-++..+.. ..+..++.++||---+..+.+ .
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e------~~g~~V~glAPTgkAa~~L~e----~- 903 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPE------SERPRVVGLGPTHRAVGEMRS----A- 903 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhh------ccCceEEEEechHHHHHHHHH----h-
Confidence 6899999999999976 66899999999999863 2222322221 235678889998665544321 1
Q ss_pred HHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCcHHHHH
Q 007402 124 ELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLK 203 (605)
Q Consensus 124 ~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~~~l~ 203 (605)
++.. ......|.... ... ..+. .......+||||||=.+. ..++.
T Consensus 904 -------Gi~A---------~TIasfL~~~~---------~~~--~~~~----~~~~~~~llIVDEASMV~----~~~m~ 948 (1623)
T PRK14712 904 -------GVDA---------QTLASFLHDTQ---------LQQ--RSGE----TPDFSNTLFLLDESSMVG----NTDMA 948 (1623)
T ss_pred -------CchH---------hhHHHHhcccc---------chh--hccc----CCCCCCcEEEEEcccccc----HHHHH
Confidence 1111 11122221100 000 0110 112335799999997654 45666
Q ss_pred HHHhhCCC-CceEEEEeee
Q 007402 204 ALSAVIPR-GCQCLLMSAT 221 (605)
Q Consensus 204 ~i~~~lp~-~~q~il~SAT 221 (605)
.++..++. +.++||+.-+
T Consensus 949 ~ll~~~~~~garvVLVGD~ 967 (1623)
T PRK14712 949 RAYALIAAGGGRAVASGDT 967 (1623)
T ss_pred HHHHhhhhCCCEEEEEcch
Confidence 66666664 5788887655
No 229
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=95.08 E-value=0.095 Score=64.65 Aligned_cols=125 Identities=18% Similarity=0.112 Sum_probs=82.2
Q ss_pred ChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHHhcC
Q 007402 49 PTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKG 128 (605)
Q Consensus 49 pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~ 128 (605)
.|+-|.+||. ..|++++|.|..|||||.+.+--++..+... ....++|+++=|+.-+..+.+.+...+...-.
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~-----~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~~ 74 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRG-----VDIDRLLVVTFTNAAAREMKERIEEALQKALQ 74 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC-----CCHhhEEEEeccHHHHHHHHHHHHHHHHHHHh
Confidence 5899999997 4688999999999999998877777766642 12346999999999999999888876543211
Q ss_pred CcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcch
Q 007402 129 QVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADL 192 (605)
Q Consensus 129 ~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~ 192 (605)
. ..........+..-...-|+|-..+...+-..... .+.++ -.+=|.||...
T Consensus 75 --~--------~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~-~l~ld-P~F~i~de~e~ 126 (1232)
T TIGR02785 75 --Q--------EPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYY-LLDLD-PSFRILTDTEQ 126 (1232)
T ss_pred --c--------CchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhh-hcCCC-CCceeCCHHHH
Confidence 0 11112233334444567799988876555433211 12221 23456888775
No 230
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.99 E-value=0.19 Score=52.53 Aligned_cols=66 Identities=21% Similarity=0.192 Sum_probs=42.8
Q ss_pred HHHHHCCCCCChHHHHHHHHHHh-CCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHH
Q 007402 39 HALNKKGIQKPTLIQQASIPLIL-EGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELC 112 (605)
Q Consensus 39 ~al~~~g~~~pt~iQ~~aIp~~l-~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa 112 (605)
..+...|. .++.|...+..+. .++++|++++||||||.. +-.++..+... ....+++++=.+.||.
T Consensus 121 ~~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~-----~~~~rivtiEd~~El~ 187 (323)
T PRK13833 121 DDYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVAS-----APEDRLVILEDTAEIQ 187 (323)
T ss_pred HHHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcC-----CCCceEEEecCCcccc
Confidence 34555665 5667777776555 457999999999999963 34444444321 2245677777777763
No 231
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=94.94 E-value=0.087 Score=53.55 Aligned_cols=46 Identities=24% Similarity=0.292 Sum_probs=34.0
Q ss_pred ccCCCceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecC
Q 007402 177 SFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSS 223 (605)
Q Consensus 177 ~~l~~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~ 223 (605)
.....++++|+||||.|.+.. ...+...++..++...++|..--++
T Consensus 125 ~~~~~fKiiIlDEcdsmtsda-q~aLrr~mE~~s~~trFiLIcnyls 170 (346)
T KOG0989|consen 125 YPCPPFKIIILDECDSMTSDA-QAALRRTMEDFSRTTRFILICNYLS 170 (346)
T ss_pred CCCCcceEEEEechhhhhHHH-HHHHHHHHhccccceEEEEEcCChh
Confidence 445667999999999987653 4566677777777888888766544
No 232
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.92 E-value=0.066 Score=50.93 Aligned_cols=48 Identities=21% Similarity=0.187 Sum_probs=30.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHH
Q 007402 66 VVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMAL 122 (605)
Q Consensus 66 vlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l 122 (605)
+++.|++|+|||...+--+.+.+ . .+..++++.. .+-..++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~-~-------~g~~v~~~s~-e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL-A-------RGEPGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH-H-------CCCcEEEEEC-CCCHHHHHHHHHHc
Confidence 68999999999975443333333 2 2455777754 45566666666544
No 233
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=94.91 E-value=0.12 Score=59.87 Aligned_cols=70 Identities=27% Similarity=0.264 Sum_probs=56.7
Q ss_pred HHHHHhhcCCCeEEEEecchhHHHHHHHHHH----HcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 007402 274 LTLLKLELVQKKALIFTNTIDMAFRLKLFLE----KFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDT 343 (605)
Q Consensus 274 ~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~----~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~ 343 (605)
..++..-..+.+++|.++|..-|...+..++ .+|++++.++|+++...|..+++.+..|..+|+|+|...
T Consensus 301 ~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~l 374 (681)
T PRK10917 301 LAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHAL 374 (681)
T ss_pred HHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHH
Confidence 3333333345689999999988877666554 457999999999999999999999999999999999754
No 234
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.91 E-value=0.34 Score=51.66 Aligned_cols=53 Identities=13% Similarity=0.191 Sum_probs=28.8
Q ss_pred CceEEEEeCcchhccC-CcHHHHHHHHhhCCCCceEEEEeeecC-hhHHHHHHHh
Q 007402 181 SLKILVLDEADLLLSY-GYEDDLKALSAVIPRGCQCLLMSATSS-SDVDKLKKLI 233 (605)
Q Consensus 181 ~l~~lViDEad~i~~~-g~~~~l~~i~~~lp~~~q~il~SATl~-~~v~~l~~~~ 233 (605)
+.++|+||-+=+.... ..-..+..++....+..-++.+|||.. .++....+.|
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F 374 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNF 374 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHh
Confidence 4678899987654322 122334444443333333555888765 4555555555
No 235
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=94.79 E-value=0.13 Score=55.48 Aligned_cols=79 Identities=13% Similarity=0.042 Sum_probs=51.3
Q ss_pred CCCCCChHHHHHHHHH---Hh-CCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHH
Q 007402 44 KGIQKPTLIQQASIPL---IL-EGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEV 119 (605)
Q Consensus 44 ~g~~~pt~iQ~~aIp~---~l-~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~ 119 (605)
+-|...+|-|-+-.-. .| .+.+.|+.+|+|+|||.+.+-.++..-+..+. ...+.++..-|..=.+....++
T Consensus 12 FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~----~~~KliYCSRTvpEieK~l~El 87 (755)
T KOG1131|consen 12 FPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPD----EHRKLIYCSRTVPEIEKALEEL 87 (755)
T ss_pred cCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCc----ccceEEEecCcchHHHHHHHHH
Confidence 3566667777655432 33 34689999999999999877777776665432 1334556556665566666666
Q ss_pred HHHHHHh
Q 007402 120 MALIELC 126 (605)
Q Consensus 120 ~~l~~~~ 126 (605)
+.+..|.
T Consensus 88 ~~l~~y~ 94 (755)
T KOG1131|consen 88 KRLMDYR 94 (755)
T ss_pred HHHHHHH
Confidence 6666553
No 236
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=94.77 E-value=0.099 Score=56.42 Aligned_cols=147 Identities=20% Similarity=0.267 Sum_probs=83.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHH-HHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCH
Q 007402 65 DVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRE-LCQQVYSEVMALIELCKGQVQLKVVQLTSSMPA 143 (605)
Q Consensus 65 dvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtre-La~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~ 143 (605)
-.++.+..|||||.+.++-++..++.. .++.+++++-||.. |..-++..+...+...+ +....-......
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~-----~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g----~~~~~~~~~~~~ 73 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAIN-----KKQQNILAARKVQNSIRDSVFKDIENLLSIEG----INYEFKKSKSSM 73 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhc-----CCCcEEEEEehhhhHHHHHHHHHHHHHHHHcC----ChhheeecCCcc
Confidence 368899999999999988888877763 13577899989886 77777888776665432 110000000000
Q ss_pred HHHHHHHcCCCcEEEECC-chHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCcHHHHHHHHhhCC--CCceEEEEee
Q 007402 144 SDLRAALAGPPDIVIATP-GCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP--RGCQCLLMSA 220 (605)
Q Consensus 144 ~~~~~~l~~~~dIvV~TP-~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~~~l~~i~~~lp--~~~q~il~SA 220 (605)
.......+..|++..- +.... + .....+.++.+|||..+.. +.+..+...+. .....+++|.
T Consensus 74 --~i~~~~~g~~i~f~g~~d~~~~-i--------k~~~~~~~~~idEa~~~~~----~~~~~l~~rlr~~~~~~~i~~t~ 138 (396)
T TIGR01547 74 --EIKILNTGKKFIFKGLNDKPNK-L--------KSGAGIAIIWFEEASQLTF----EDIKELIPRLRETGGKKFIIFSS 138 (396)
T ss_pred --EEEecCCCeEEEeecccCChhH-h--------hCcceeeeehhhhhhhcCH----HHHHHHHHHhhccCCccEEEEEc
Confidence 0000000223443332 11111 1 1223368999999999743 34455544443 2323578888
Q ss_pred ecChhHHHHHHHhcC
Q 007402 221 TSSSDVDKLKKLILH 235 (605)
Q Consensus 221 Tl~~~v~~l~~~~l~ 235 (605)
|+......+.+.+..
T Consensus 139 NP~~~~~w~~~~f~~ 153 (396)
T TIGR01547 139 NPESPLHWVKKRFIE 153 (396)
T ss_pred CcCCCccHHHHHHHh
Confidence 887655566666654
No 237
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=94.70 E-value=0.2 Score=52.14 Aligned_cols=40 Identities=18% Similarity=0.355 Sum_probs=28.1
Q ss_pred CceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEee
Q 007402 181 SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSA 220 (605)
Q Consensus 181 ~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SA 220 (605)
..++|||||+|.+........+..+++..+..+++|+.|.
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n 139 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITAN 139 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcC
Confidence 3578999999988333345667777777777777776553
No 238
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.70 E-value=0.73 Score=50.87 Aligned_cols=39 Identities=15% Similarity=0.298 Sum_probs=23.0
Q ss_pred CCceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEe
Q 007402 180 DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMS 219 (605)
Q Consensus 180 ~~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~S 219 (605)
...+++||||+|.+....+ +.+...++.-|+...+|+.+
T Consensus 115 ~~~KVvIIDEah~Ls~~A~-NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNSAF-NALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred CCceEEEEeChHhCCHHHH-HHHHHHHhCCCCCeEEEEEe
Confidence 5688999999998764332 23333344444455555443
No 239
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.68 E-value=0.24 Score=62.16 Aligned_cols=130 Identities=22% Similarity=0.248 Sum_probs=75.4
Q ss_pred CChHHHHHHHHHHhCC--CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHH
Q 007402 48 KPTLIQQASIPLILEG--KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIEL 125 (605)
Q Consensus 48 ~pt~iQ~~aIp~~l~g--kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~ 125 (605)
.+++-|.+|+..++.+ +-+++.+..|+|||... -.++..+.... ...+..++.++||---+..+.+ .
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l~---~~~~~~V~glAPTgrAAk~L~e----~--- 1035 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQF-RAVMSAVNTLP---ESERPRVVGLGPTHRAVGEMRS----A--- 1035 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHhh---cccCceEEEECCcHHHHHHHHh----c---
Confidence 6899999999999986 45889999999999753 22333221100 1235668889999765543321 1
Q ss_pred hcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCcHHHHHHH
Q 007402 126 CKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL 205 (605)
Q Consensus 126 ~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~~~l~~i 205 (605)
++.. ......|... +. ....+. .....-++||||||=.+- ..++..+
T Consensus 1036 -----Gi~A---------~TI~s~L~~~-~~----------~~~~~~----~~~~~~~llIVDEaSMv~----~~~m~~L 1082 (1747)
T PRK13709 1036 -----GVDA---------QTLASFLHDT-QL----------QQRSGE----TPDFSNTLFLLDESSMVG----NTDMARA 1082 (1747)
T ss_pred -----Ccch---------hhHHHHhccc-cc----------cccccc----CCCCCCcEEEEEcccccc----HHHHHHH
Confidence 2211 1111222110 00 000110 111234799999997654 4567777
Q ss_pred HhhCCC-CceEEEEeee
Q 007402 206 SAVIPR-GCQCLLMSAT 221 (605)
Q Consensus 206 ~~~lp~-~~q~il~SAT 221 (605)
+..++. ++++||+.-+
T Consensus 1083 l~~~~~~garvVLVGD~ 1099 (1747)
T PRK13709 1083 YALIAAGGGRAVSSGDT 1099 (1747)
T ss_pred HHhhhcCCCEEEEecch
Confidence 777764 6888887655
No 240
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=94.64 E-value=0.52 Score=45.61 Aligned_cols=125 Identities=15% Similarity=0.134 Sum_probs=63.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHH
Q 007402 66 VVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASD 145 (605)
Q Consensus 66 vlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~ 145 (605)
+++.+|||+|||....--+.....+ ....+||-+-|--. -..++++.+...+ ++.+.......+...
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~-------~~~v~lis~D~~R~--ga~eQL~~~a~~l----~vp~~~~~~~~~~~~ 70 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLK-------GKKVALISADTYRI--GAVEQLKTYAEIL----GVPFYVARTESDPAE 70 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT-------T--EEEEEESTSST--HHHHHHHHHHHHH----TEEEEESSTTSCHHH
T ss_pred EEEECCCCCchHhHHHHHHHHHhhc-------cccceeecCCCCCc--cHHHHHHHHHHHh----ccccchhhcchhhHH
Confidence 6799999999998765544443333 12234444433211 1234444444433 566554433322211
Q ss_pred HHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhcc-CCcHHHHHHHHhhCCCCceEEEEeeecCh
Q 007402 146 LRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLS-YGYEDDLKALSAVIPRGCQCLLMSATSSS 224 (605)
Q Consensus 146 ~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~-~g~~~~l~~i~~~lp~~~q~il~SATl~~ 224 (605)
. +.+.+.. ...++.++|+||-+-+... ......+..+...+.+..-.+.+|||...
T Consensus 71 ~-----------------~~~~l~~------~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~ 127 (196)
T PF00448_consen 71 I-----------------AREALEK------FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQ 127 (196)
T ss_dssp H-----------------HHHHHHH------HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG
T ss_pred H-----------------HHHHHHH------HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccCh
Confidence 1 0111111 1123466788887754321 12345666777777666667778999876
Q ss_pred hH
Q 007402 225 DV 226 (605)
Q Consensus 225 ~v 226 (605)
+.
T Consensus 128 ~~ 129 (196)
T PF00448_consen 128 ED 129 (196)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 241
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=94.50 E-value=0.14 Score=58.74 Aligned_cols=70 Identities=21% Similarity=0.261 Sum_probs=57.3
Q ss_pred HHHHHhhcCCCeEEEEecchhHHHHHHHHHHH----cCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 007402 274 LTLLKLELVQKKALIFTNTIDMAFRLKLFLEK----FGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDT 343 (605)
Q Consensus 274 ~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~----~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~ 343 (605)
..++.....+.+++|.++|..-|...+..+++ +|++++.++|+++...|..+++...+|..+|+|+|...
T Consensus 275 l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~l 348 (630)
T TIGR00643 275 LAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHAL 348 (630)
T ss_pred HHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHH
Confidence 33443333466899999999988877666554 47999999999999999999999999999999999764
No 242
>PRK08084 DNA replication initiation factor; Provisional
Probab=94.49 E-value=0.14 Score=51.06 Aligned_cols=42 Identities=17% Similarity=0.246 Sum_probs=24.7
Q ss_pred ceEEEEeCcchhccC-CcHHHHHHHHhhCCC-C-ceEEEEeeecC
Q 007402 182 LKILVLDEADLLLSY-GYEDDLKALSAVIPR-G-CQCLLMSATSS 223 (605)
Q Consensus 182 l~~lViDEad~i~~~-g~~~~l~~i~~~lp~-~-~q~il~SATl~ 223 (605)
.++|+|||+|.+... .+...+..++..+.. + .++++.|-..+
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p 142 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPP 142 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCCh
Confidence 468999999998643 345556666655432 3 35555444333
No 243
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=94.46 E-value=0.19 Score=55.60 Aligned_cols=71 Identities=21% Similarity=0.251 Sum_probs=51.5
Q ss_pred HHHHHHHHHHh-----CC----CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q 007402 51 LIQQASIPLIL-----EG----KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMA 121 (605)
Q Consensus 51 ~iQ~~aIp~~l-----~g----kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~ 121 (605)
|+|.-.+-.++ .| +.+++.-+=|.|||......++-.++-. ...+..+++.+++++-|..+++.+..
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~----g~~~~~i~~~A~~~~QA~~~f~~~~~ 76 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD----GEPGAEIYCAANTRDQAKIVFDEAKK 76 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC----CccCceEEEEeCCHHHHHHHHHHHHH
Confidence 56766665555 22 4588889999999986555444444332 24467899999999999999999988
Q ss_pred HHHH
Q 007402 122 LIEL 125 (605)
Q Consensus 122 l~~~ 125 (605)
+...
T Consensus 77 ~i~~ 80 (477)
T PF03354_consen 77 MIEA 80 (477)
T ss_pred HHHh
Confidence 8764
No 244
>PRK05580 primosome assembly protein PriA; Validated
Probab=94.43 E-value=0.24 Score=57.22 Aligned_cols=61 Identities=21% Similarity=0.325 Sum_probs=55.3
Q ss_pred CCeEEEEecchhHHHHHHHHHHH-cCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 007402 283 QKKALIFTNTIDMAFRLKLFLEK-FGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDT 343 (605)
Q Consensus 283 ~~k~IIFv~s~~~~~~L~~~L~~-~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~ 343 (605)
+.++||.|+++..+.++...|++ +|..+.++||+++..+|..+......|..+|+|+|..+
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsa 251 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSA 251 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHH
Confidence 56899999999999999888865 78999999999999999999999999999999999753
No 245
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=94.40 E-value=0.89 Score=51.53 Aligned_cols=154 Identities=14% Similarity=0.200 Sum_probs=86.0
Q ss_pred CCCCCChHHHHHHHHHH---hCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHH
Q 007402 44 KGIQKPTLIQQASIPLI---LEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVM 120 (605)
Q Consensus 44 ~g~~~pt~iQ~~aIp~~---l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~ 120 (605)
.+-.-|.|.=.+=|..+ ...+-.++.+|=|.|||.+..+.+...+.. .+.+++|.+|...-++++.+.++
T Consensus 165 ~np~~~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f-------~Gi~IlvTAH~~~ts~evF~rv~ 237 (752)
T PHA03333 165 FNPEAPSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISF-------LEIDIVVQAQRKTMCLTLYNRVE 237 (752)
T ss_pred cCcCCCChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHh-------cCCeEEEECCChhhHHHHHHHHH
Confidence 33444455444444443 345778999999999998766555543321 25779999999999999999988
Q ss_pred HHHHHhcC--Cc--ceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHH----HHH--hcCCCCCcccCCCceEEEEeCc
Q 007402 121 ALIELCKG--QV--QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMP----KCL--STGVLQSKSFSDSLKILVLDEA 190 (605)
Q Consensus 121 ~l~~~~~~--~~--~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~----~~l--~~~~~~~~~~l~~l~~lViDEa 190 (605)
.++...+. .+ .-.+..+.|+. -.|.+..|.-.. ... .+.. +...-.++++||+|||
T Consensus 238 ~~le~lg~~~~fp~~~~iv~vkgg~------------E~I~f~~p~gak~G~sti~F~Ars~--~s~RG~~~DLLIVDEA 303 (752)
T PHA03333 238 TVVHAYQHKPWFPEEFKIVTLKGTD------------ENLEYISDPAAKEGKTTAHFLASSP--NAARGQNPDLVIVDEA 303 (752)
T ss_pred HHHHHhccccccCCCceEEEeeCCe------------eEEEEecCcccccCcceeEEecccC--CCcCCCCCCEEEEECc
Confidence 88763320 00 11122222221 112222221111 000 0000 1112135689999999
Q ss_pred chhccCCcHHHHHHHHhhCC-CCceEEEEeeec
Q 007402 191 DLLLSYGYEDDLKALSAVIP-RGCQCLLMSATS 222 (605)
Q Consensus 191 d~i~~~g~~~~l~~i~~~lp-~~~q~il~SATl 222 (605)
.-+-. +.+..++-.+. .+.+.+++|.+-
T Consensus 304 AfI~~----~~l~aIlP~l~~~~~k~IiISS~~ 332 (752)
T PHA03333 304 AFVNP----GALLSVLPLMAVKGTKQIHISSPV 332 (752)
T ss_pred ccCCH----HHHHHHHHHHccCCCceEEEeCCC
Confidence 98754 45555555444 456677777665
No 246
>PRK12377 putative replication protein; Provisional
Probab=94.36 E-value=0.32 Score=48.91 Aligned_cols=45 Identities=18% Similarity=0.340 Sum_probs=26.9
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHH
Q 007402 64 KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYS 117 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~ 117 (605)
..+++.|++|+|||-.. ..+...+... +..+ +.++..+|..++..
T Consensus 102 ~~l~l~G~~GtGKThLa-~AIa~~l~~~-------g~~v-~~i~~~~l~~~l~~ 146 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLA-AAIGNRLLAK-------GRSV-IVVTVPDVMSRLHE 146 (248)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHc-------CCCe-EEEEHHHHHHHHHH
Confidence 57999999999999632 3334444331 3334 44455566665443
No 247
>PRK07952 DNA replication protein DnaC; Validated
Probab=94.32 E-value=0.53 Score=47.21 Aligned_cols=45 Identities=13% Similarity=0.237 Sum_probs=26.2
Q ss_pred CceEEEEeCcchhccCCcHH-HHHHHHhh-CCCCceEEEEeeecChh
Q 007402 181 SLKILVLDEADLLLSYGYED-DLKALSAV-IPRGCQCLLMSATSSSD 225 (605)
Q Consensus 181 ~l~~lViDEad~i~~~g~~~-~l~~i~~~-lp~~~q~il~SATl~~~ 225 (605)
+.++|||||++......+.. .+..|+.. ......+|+.|---..+
T Consensus 162 ~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~ 208 (244)
T PRK07952 162 NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEE 208 (244)
T ss_pred cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHH
Confidence 57799999999876444443 44555543 22345566655443333
No 248
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=94.31 E-value=0.11 Score=59.98 Aligned_cols=70 Identities=17% Similarity=0.101 Sum_probs=53.7
Q ss_pred CChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHH
Q 007402 48 KPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALI 123 (605)
Q Consensus 48 ~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~ 123 (605)
.+++-|.+|+.. ....++|.|..|||||.+.+--+...+... ..+..++|+|+.|+.-|..+.+.+..++
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~----~v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGC----GYQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhc----CCCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 478899999865 346789999999999998666555544332 1235579999999999999999888764
No 249
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.26 E-value=0.94 Score=49.30 Aligned_cols=53 Identities=23% Similarity=0.204 Sum_probs=29.8
Q ss_pred CceEEEEeCcchhccC-CcHHHHHHHHhh-CCCCceEEEEeeecCh-hHHHHHHHh
Q 007402 181 SLKILVLDEADLLLSY-GYEDDLKALSAV-IPRGCQCLLMSATSSS-DVDKLKKLI 233 (605)
Q Consensus 181 ~l~~lViDEad~i~~~-g~~~~l~~i~~~-lp~~~q~il~SATl~~-~v~~l~~~~ 233 (605)
+.++||||.+-..... .....+..++.. ..+..-.+++|||... ++..+...|
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f 354 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHF 354 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHh
Confidence 4689999988543211 122455555552 2223446778998764 455555544
No 250
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=94.24 E-value=0.092 Score=61.23 Aligned_cols=72 Identities=17% Similarity=0.134 Sum_probs=55.1
Q ss_pred CCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHH
Q 007402 47 QKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIE 124 (605)
Q Consensus 47 ~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~ 124 (605)
..+++-|.+|+.. ....++|.|..|||||.+..--+...+... ..+..++|+|+.|+..|..+.+.+.+++.
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~----~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVE----NASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcC----CCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 4589999999964 346899999999999998655554443322 12356799999999999999999888764
No 251
>PRK09183 transposase/IS protein; Provisional
Probab=94.15 E-value=0.97 Score=45.77 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=18.0
Q ss_pred HhCCCcEEEEcCCCchHHHHHH
Q 007402 60 ILEGKDVVARAKTGSGKTFAYL 81 (605)
Q Consensus 60 ~l~gkdvlv~a~TGsGKT~a~~ 81 (605)
+-.|.++++.||+|+|||....
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~ 120 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAI 120 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHH
Confidence 4467899999999999997543
No 252
>PRK05642 DNA replication initiation factor; Validated
Probab=94.11 E-value=0.24 Score=49.35 Aligned_cols=44 Identities=23% Similarity=0.376 Sum_probs=28.7
Q ss_pred CceEEEEeCcchhccC-CcHHHHHHHHhhCCCCceEEEEeeecCh
Q 007402 181 SLKILVLDEADLLLSY-GYEDDLKALSAVIPRGCQCLLMSATSSS 224 (605)
Q Consensus 181 ~l~~lViDEad~i~~~-g~~~~l~~i~~~lp~~~q~il~SATl~~ 224 (605)
+.++||||++|.+... .+...+..++..+......+++++|.++
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 3568999999987543 3456677787766543344566666543
No 253
>PRK06893 DNA replication initiation factor; Validated
Probab=94.10 E-value=0.11 Score=51.48 Aligned_cols=45 Identities=24% Similarity=0.314 Sum_probs=28.6
Q ss_pred CceEEEEeCcchhccC-CcHHHHHHHHhhCCC-CceEEEEeeecChh
Q 007402 181 SLKILVLDEADLLLSY-GYEDDLKALSAVIPR-GCQCLLMSATSSSD 225 (605)
Q Consensus 181 ~l~~lViDEad~i~~~-g~~~~l~~i~~~lp~-~~q~il~SATl~~~ 225 (605)
+.++|||||+|.+... .+...+..++..+.. +.+++++|++.++.
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 4679999999988643 234455555554433 45667787776543
No 254
>PRK08727 hypothetical protein; Validated
Probab=94.04 E-value=0.27 Score=49.00 Aligned_cols=46 Identities=13% Similarity=0.104 Sum_probs=25.7
Q ss_pred CceEEEEeCcchhccCC-cHHHHHHHHhhCC-CCceEEEEeeecChhH
Q 007402 181 SLKILVLDEADLLLSYG-YEDDLKALSAVIP-RGCQCLLMSATSSSDV 226 (605)
Q Consensus 181 ~l~~lViDEad~i~~~g-~~~~l~~i~~~lp-~~~q~il~SATl~~~v 226 (605)
+.++|||||+|.+.... ....+..+...+. .+.++|+.|-..+.+.
T Consensus 93 ~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l 140 (233)
T PRK08727 93 GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGL 140 (233)
T ss_pred cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhh
Confidence 34689999999887543 2233444444432 2345555555545444
No 255
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=93.99 E-value=0.57 Score=55.09 Aligned_cols=39 Identities=21% Similarity=0.371 Sum_probs=27.1
Q ss_pred CCceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEe
Q 007402 180 DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMS 219 (605)
Q Consensus 180 ~~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~S 219 (605)
...+++||||||.|...+ .+.|.++++..|..+-+||.+
T Consensus 119 ~~~KV~IIDEad~lt~~a-~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG-FNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 467899999999987654 344555666666666666654
No 256
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=93.98 E-value=0.24 Score=50.76 Aligned_cols=113 Identities=17% Similarity=0.287 Sum_probs=58.5
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCC----CCCCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeC
Q 007402 64 KDVVARAKTGSGKTFAYLLPLLHRLFNESSPK----SKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTS 139 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~----~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~ 139 (605)
.++++.|+||.|||. ++++........ ...-+.++|-+|...=..-.+..+-..+ ...+- .
T Consensus 62 p~lLivG~snnGKT~-----Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~l-------gaP~~---~ 126 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTM-----IIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEAL-------GAPYR---P 126 (302)
T ss_pred CceEEecCCCCcHHH-----HHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHh-------CcccC---C
Confidence 589999999999998 445544322111 1223556666676654444444433221 11110 1
Q ss_pred CCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCcH--HHHHHHHhhCCCCce
Q 007402 140 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE--DDLKALSAVIPRGCQ 214 (605)
Q Consensus 140 ~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~--~~l~~i~~~lp~~~q 214 (605)
..+...... .+..++.. -.+++|||||.|.++.-.+. ..+..+++.+.+..+
T Consensus 127 ~~~~~~~~~--------------~~~~llr~---------~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ 180 (302)
T PF05621_consen 127 RDRVAKLEQ--------------QVLRLLRR---------LGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQ 180 (302)
T ss_pred CCCHHHHHH--------------HHHHHHHH---------cCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccC
Confidence 111111111 01223332 34789999999998866543 344455555555444
No 257
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=93.89 E-value=0.62 Score=41.06 Aligned_cols=16 Identities=31% Similarity=0.412 Sum_probs=13.5
Q ss_pred ceEEEEeCcchhccCC
Q 007402 182 LKILVLDEADLLLSYG 197 (605)
Q Consensus 182 l~~lViDEad~i~~~g 197 (605)
-.+|+|||+|.+....
T Consensus 59 ~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKS 74 (132)
T ss_dssp SEEEEEETGGGTSHHC
T ss_pred ceeeeeccchhccccc
Confidence 4789999999988664
No 258
>PLN03025 replication factor C subunit; Provisional
Probab=93.84 E-value=0.77 Score=48.00 Aligned_cols=38 Identities=26% Similarity=0.331 Sum_probs=24.9
Q ss_pred CceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEe
Q 007402 181 SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMS 219 (605)
Q Consensus 181 ~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~S 219 (605)
..+++||||||.|.... ...+..+++..+..+.+++.+
T Consensus 99 ~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~~il~~ 136 (319)
T PLN03025 99 RHKIVILDEADSMTSGA-QQALRRTMEIYSNTTRFALAC 136 (319)
T ss_pred CeEEEEEechhhcCHHH-HHHHHHHHhcccCCceEEEEe
Confidence 47899999999986543 445555566555555555433
No 259
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=93.81 E-value=0.13 Score=59.90 Aligned_cols=72 Identities=14% Similarity=0.111 Sum_probs=54.8
Q ss_pred CCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHH
Q 007402 47 QKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIE 124 (605)
Q Consensus 47 ~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~ 124 (605)
..+++-|.+|+... ...++|.|..|||||.+..--+...+... .-+..++|+|+-|+..|..+.+.+..++.
T Consensus 8 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~----~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 8 DSLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVE----NASPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred HhcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcC----CCChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 35899999999643 46899999999999998655555433222 12355799999999999999999888754
No 260
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.79 E-value=0.99 Score=43.33 Aligned_cols=54 Identities=20% Similarity=0.376 Sum_probs=45.0
Q ss_pred CCceEEEEeCcchhccCCc--HHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHh
Q 007402 180 DSLKILVLDEADLLLSYGY--EDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLI 233 (605)
Q Consensus 180 ~~l~~lViDEad~i~~~g~--~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~ 233 (605)
..+++||+||+=..+++|+ .+++..++..-|...-+|+..-..|+.+..++.+.
T Consensus 114 ~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~ADlV 169 (191)
T PRK05986 114 ESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIEAADLV 169 (191)
T ss_pred CCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCchh
Confidence 4688999999999999986 47788888989988889988888888876666544
No 261
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.74 E-value=0.56 Score=52.26 Aligned_cols=39 Identities=18% Similarity=0.341 Sum_probs=25.6
Q ss_pred CCceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEe
Q 007402 180 DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMS 219 (605)
Q Consensus 180 ~~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~S 219 (605)
...+++||||||.|....+ +.+...++.-|..+.+|+.+
T Consensus 118 ~~~kV~iIDE~~~ls~~a~-naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSF-NALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHH-HHHHHHHhccCCCeEEEEEE
Confidence 3578999999998875443 33444555556666666654
No 262
>PF05729 NACHT: NACHT domain
Probab=93.69 E-value=0.55 Score=43.16 Aligned_cols=38 Identities=29% Similarity=0.384 Sum_probs=24.6
Q ss_pred EEEEeCcchhccCC-------cHHHHHHHHhh-CCCCceEEEEeee
Q 007402 184 ILVLDEADLLLSYG-------YEDDLKALSAV-IPRGCQCLLMSAT 221 (605)
Q Consensus 184 ~lViDEad~i~~~g-------~~~~l~~i~~~-lp~~~q~il~SAT 221 (605)
+||||=+|.+.... +...+..++.. ++++.++++.|.+
T Consensus 84 llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~ 129 (166)
T PF05729_consen 84 LLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRP 129 (166)
T ss_pred EEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcC
Confidence 49999999987642 22445555554 5667777766654
No 263
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.67 E-value=0.34 Score=54.04 Aligned_cols=61 Identities=20% Similarity=0.329 Sum_probs=54.9
Q ss_pred CCeEEEEecchhHHHHHHHHHHH-cCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 007402 283 QKKALIFTNTIDMAFRLKLFLEK-FGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDT 343 (605)
Q Consensus 283 ~~k~IIFv~s~~~~~~L~~~L~~-~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~ 343 (605)
++++||.++++..+..+...|++ +|..+.++||+++..+|..+......|..+|+|+|..+
T Consensus 25 g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsa 86 (505)
T TIGR00595 25 GKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSA 86 (505)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHH
Confidence 56899999999999999888864 68899999999999999999999999999999999754
No 264
>PRK11054 helD DNA helicase IV; Provisional
Probab=93.64 E-value=0.32 Score=56.16 Aligned_cols=71 Identities=15% Similarity=0.132 Sum_probs=52.5
Q ss_pred CCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHH
Q 007402 47 QKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALI 123 (605)
Q Consensus 47 ~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~ 123 (605)
..+++-|.+|+-. ....++|.|..|||||.+.+--+. +++... ...+.++|+++.|+..|..+.+.+...+
T Consensus 195 ~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~a-yLl~~~---~~~~~~IL~ltft~~AA~em~eRL~~~l 265 (684)
T PRK11054 195 SPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAG-WLLARG---QAQPEQILLLAFGRQAAEEMDERIRERL 265 (684)
T ss_pred CCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHH-HHHHhC---CCCHHHeEEEeccHHHHHHHHHHHHHhc
Confidence 5689999999953 335789999999999987544443 333321 1235689999999999999888877653
No 265
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=93.60 E-value=0.047 Score=51.71 Aligned_cols=124 Identities=20% Similarity=0.153 Sum_probs=53.6
Q ss_pred EEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHH
Q 007402 67 VARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL 146 (605)
Q Consensus 67 lv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~ 146 (605)
++.|+-|-|||.+..+.+.+.+.. ...+++|.+|+.+=++.+++.+..-+..+ +++... .......
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~-------~~~~I~vtAP~~~~~~~lf~~~~~~l~~~----~~~~~~---~~~~~~~ 66 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQK-------GKIRILVTAPSPENVQTLFEFAEKGLKAL----GYKEEK---KKRIGQI 66 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS------------EEEE-SS--S-HHHHHCC---------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHh-------cCceEEEecCCHHHHHHHHHHHHhhcccc----cccccc---ccccccc
Confidence 578999999999776655443322 12579999999988777777665443322 111100 0000000
Q ss_pred HHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecC
Q 007402 147 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSS 223 (605)
Q Consensus 147 ~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~ 223 (605)
.........|-+-.|+.+... ....++||||||=.+- -..+..++...+ .++||.|..
T Consensus 67 ~~~~~~~~~i~f~~Pd~l~~~-----------~~~~DlliVDEAAaIp----~p~L~~ll~~~~----~vv~stTi~ 124 (177)
T PF05127_consen 67 IKLRFNKQRIEFVAPDELLAE-----------KPQADLLIVDEAAAIP----LPLLKQLLRRFP----RVVFSTTIH 124 (177)
T ss_dssp ------CCC--B--HHHHCCT---------------SCEEECTGGGS-----HHHHHHHHCCSS----EEEEEEEBS
T ss_pred cccccccceEEEECCHHHHhC-----------cCCCCEEEEechhcCC----HHHHHHHHhhCC----EEEEEeecc
Confidence 001112344555555443211 1234799999997763 556666665543 567788864
No 266
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.58 E-value=0.29 Score=52.03 Aligned_cols=25 Identities=24% Similarity=0.097 Sum_probs=19.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHH
Q 007402 63 GKDVVARAKTGSGKTFAYLLPLLHR 87 (605)
Q Consensus 63 gkdvlv~a~TGsGKT~a~~lpil~~ 87 (605)
|..+++.+|||+|||......+...
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 5678999999999998765544443
No 267
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=93.47 E-value=0.31 Score=53.99 Aligned_cols=53 Identities=21% Similarity=0.384 Sum_probs=34.2
Q ss_pred cccCcccCC-CCHHHHHHHHH--CCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHH
Q 007402 24 EEKSFEELG-LDLRLVHALNK--KGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFA 79 (605)
Q Consensus 24 ~~~~f~~~~-L~~~l~~al~~--~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a 79 (605)
+..+|++++ |++.+-+.... +.+.+|..++...++. .+.+|+.+|+|+|||..
T Consensus 177 p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~---p~GILLyGPPGTGKT~L 232 (512)
T TIGR03689 177 PDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKP---PKGVLLYGPPGCGKTLI 232 (512)
T ss_pred CCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCC---CcceEEECCCCCcHHHH
Confidence 467899987 77654332222 3455555555444432 36799999999999984
No 268
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.46 E-value=0.31 Score=53.07 Aligned_cols=40 Identities=30% Similarity=0.329 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHhCCC--cEEEEcCCCchHHHHHHHHHHHHHhh
Q 007402 50 TLIQQASIPLILEGK--DVVARAKTGSGKTFAYLLPLLHRLFN 90 (605)
Q Consensus 50 t~iQ~~aIp~~l~gk--dvlv~a~TGsGKT~a~~lpil~~ll~ 90 (605)
++.|.+.+-.+++.. =+|+.+|||||||.. +..+++.+..
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~ 284 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNT 284 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcC
Confidence 566777776666653 378999999999974 4556665544
No 269
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.40 E-value=0.19 Score=51.10 Aligned_cols=77 Identities=16% Similarity=0.096 Sum_probs=40.2
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHH
Q 007402 36 RLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQV 115 (605)
Q Consensus 36 ~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv 115 (605)
.++++|...|..+..+.-.+.+--+..|.-+++.|++|+|||...+-.+.+.+.. .+..++++.- -+-..++
T Consensus 3 ~~~~~~~~~~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~-------~g~~vl~iS~-E~~~~~~ 74 (271)
T cd01122 3 EIREALSNEEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQ-------HGVRVGTISL-EEPVVRT 74 (271)
T ss_pred hhhccccccCCCCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh-------cCceEEEEEc-ccCHHHH
Confidence 3455555444433333222333234456788999999999997443333332221 1455777653 2233444
Q ss_pred HHHHH
Q 007402 116 YSEVM 120 (605)
Q Consensus 116 ~~~~~ 120 (605)
...+.
T Consensus 75 ~~r~~ 79 (271)
T cd01122 75 ARRLL 79 (271)
T ss_pred HHHHH
Confidence 44443
No 270
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=93.39 E-value=0.58 Score=53.82 Aligned_cols=39 Identities=15% Similarity=0.321 Sum_probs=24.7
Q ss_pred CCceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEe
Q 007402 180 DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMS 219 (605)
Q Consensus 180 ~~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~S 219 (605)
...+++||||+|.|....+.. +.++++.-|.+..+||.+
T Consensus 118 gr~KVIIIDEah~LT~~A~NA-LLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNA-MLKTLEEPPPHVKFILAT 156 (830)
T ss_pred CCceEEEEeChhhCCHHHHHH-HHHHHHhcCCCeEEEEEE
Confidence 357899999999886544333 334455555555555544
No 271
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=93.37 E-value=0.57 Score=47.46 Aligned_cols=17 Identities=24% Similarity=0.411 Sum_probs=14.8
Q ss_pred CcEEEEcCCCchHHHHH
Q 007402 64 KDVVARAKTGSGKTFAY 80 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a~ 80 (605)
.++++.||+|+|||..+
T Consensus 43 ~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVA 59 (261)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 47899999999999854
No 272
>PRK10689 transcription-repair coupling factor; Provisional
Probab=93.37 E-value=0.71 Score=56.35 Aligned_cols=78 Identities=14% Similarity=0.183 Sum_probs=61.8
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHH----HcCCCcEEEECCchHHHHHhcCCCC
Q 007402 99 APAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAA----LAGPPDIVIATPGCMPKCLSTGVLQ 174 (605)
Q Consensus 99 ~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~----l~~~~dIvV~TP~~l~~~l~~~~~~ 174 (605)
+.+++|++|+++-+..+++.+..... ++++..++|+++....... ..+..+|+||| +.+..|
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~p------~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaT-----dIierG--- 874 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELVP------EARIAIGHGQMRERELERVMNDFHHQRFNVLVCT-----TIIETG--- 874 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCC------CCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEC-----chhhcc---
Confidence 45799999999988888888776532 4678889999887654443 33789999999 566666
Q ss_pred CcccCCCceEEEEeCcch
Q 007402 175 SKSFSDSLKILVLDEADL 192 (605)
Q Consensus 175 ~~~~l~~l~~lViDEad~ 192 (605)
+++.++++||++.||.
T Consensus 875 --IDIP~v~~VIi~~ad~ 890 (1147)
T PRK10689 875 --IDIPTANTIIIERADH 890 (1147)
T ss_pred --cccccCCEEEEecCCC
Confidence 8889999999999986
No 273
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=93.34 E-value=0.37 Score=52.13 Aligned_cols=45 Identities=16% Similarity=0.317 Sum_probs=25.3
Q ss_pred ceEEEEeCcchhccCC-cHHHHHHHHhhC-CCCceEEEEeeecChhH
Q 007402 182 LKILVLDEADLLLSYG-YEDDLKALSAVI-PRGCQCLLMSATSSSDV 226 (605)
Q Consensus 182 l~~lViDEad~i~~~g-~~~~l~~i~~~l-p~~~q~il~SATl~~~v 226 (605)
.++|||||+|.+.... ..+.+..++..+ ..+.++++.|...+..+
T Consensus 200 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l 246 (405)
T TIGR00362 200 VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKEL 246 (405)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHH
Confidence 5689999999876542 233344444433 23556655444444433
No 274
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=93.25 E-value=0.5 Score=51.93 Aligned_cols=47 Identities=17% Similarity=0.310 Sum_probs=27.3
Q ss_pred CceEEEEeCcchhccCC-cHHHHHHHHhhC-CCCceEEEEeeecChhHH
Q 007402 181 SLKILVLDEADLLLSYG-YEDDLKALSAVI-PRGCQCLLMSATSSSDVD 227 (605)
Q Consensus 181 ~l~~lViDEad~i~~~g-~~~~l~~i~~~l-p~~~q~il~SATl~~~v~ 227 (605)
+.++|||||+|.+.... ..+.+..++..+ ..+.++++.|...+..+.
T Consensus 211 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~ 259 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELP 259 (450)
T ss_pred cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHH
Confidence 46699999999876532 233444444433 334566655555554543
No 275
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=93.25 E-value=0.35 Score=50.13 Aligned_cols=75 Identities=23% Similarity=0.262 Sum_probs=45.6
Q ss_pred cCCCCHHHHHHHHHCCCCCChHHHHHHHHHHh-CCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCc
Q 007402 30 ELGLDLRLVHALNKKGIQKPTLIQQASIPLIL-EGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPT 108 (605)
Q Consensus 30 ~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l-~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPt 108 (605)
.+.....-+..|.+.|. .++-|...+..++ .+++++++++||||||.. +-.++..+... .+..+++++=.+
T Consensus 100 k~~~~~~tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~~-----~~~~ri~tiEd~ 171 (299)
T TIGR02782 100 KKAVAVFTLDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAKN-----DPTDRVVIIEDT 171 (299)
T ss_pred CcCCCCCCHHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhcc-----CCCceEEEECCc
Confidence 33333334555666665 4455666665544 457999999999999963 33344443221 124567888787
Q ss_pred HHHH
Q 007402 109 RELC 112 (605)
Q Consensus 109 reLa 112 (605)
.||.
T Consensus 172 ~El~ 175 (299)
T TIGR02782 172 RELQ 175 (299)
T ss_pred hhhc
Confidence 7863
No 276
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=93.24 E-value=0.6 Score=46.09 Aligned_cols=41 Identities=17% Similarity=0.179 Sum_probs=24.2
Q ss_pred ceEEEEeCcchhccCCcHHHHHHHHhhCCCCce-EEEEeeecC
Q 007402 182 LKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ-CLLMSATSS 223 (605)
Q Consensus 182 l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q-~il~SATl~ 223 (605)
.++|||||+|.+-... ...+..++........ +++++++.+
T Consensus 91 ~~~liiDdi~~l~~~~-~~~L~~~~~~~~~~~~~~vl~~~~~~ 132 (227)
T PRK08903 91 AELYAVDDVERLDDAQ-QIALFNLFNRVRAHGQGALLVAGPAA 132 (227)
T ss_pred CCEEEEeChhhcCchH-HHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 4589999999875432 3445455544333333 466776654
No 277
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=93.20 E-value=1.2 Score=52.11 Aligned_cols=40 Identities=23% Similarity=0.323 Sum_probs=24.1
Q ss_pred CceEEEEeCcchhccCCcHHHHHHHHhhCC-CCceEEEEeee
Q 007402 181 SLKILVLDEADLLLSYGYEDDLKALSAVIP-RGCQCLLMSAT 221 (605)
Q Consensus 181 ~l~~lViDEad~i~~~g~~~~l~~i~~~lp-~~~q~il~SAT 221 (605)
.+.+|||||+|.+...+ .+.+..++.... ...+++++.++
T Consensus 869 ~v~IIILDEID~L~kK~-QDVLYnLFR~~~~s~SKLiLIGIS 909 (1164)
T PTZ00112 869 NVSILIIDEIDYLITKT-QKVLFTLFDWPTKINSKLVLIAIS 909 (1164)
T ss_pred cceEEEeehHhhhCccH-HHHHHHHHHHhhccCCeEEEEEec
Confidence 46689999999988652 455555555321 23455544433
No 278
>PRK04195 replication factor C large subunit; Provisional
Probab=93.19 E-value=0.37 Score=53.43 Aligned_cols=45 Identities=18% Similarity=0.127 Sum_probs=27.6
Q ss_pred ccCcccCCCCHHHHHHHHHC--CCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHH
Q 007402 25 EKSFEELGLDLRLVHALNKK--GIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAY 80 (605)
Q Consensus 25 ~~~f~~~~L~~~l~~al~~~--g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~ 80 (605)
..+|+++-..+...+.|... .|.... -.+.+|+.||+|+|||.+.
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~g~-----------~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLKGK-----------PKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhcCC-----------CCCeEEEECCCCCCHHHHH
Confidence 34566766666665555542 111100 0467999999999999743
No 279
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=93.14 E-value=0.36 Score=57.50 Aligned_cols=68 Identities=22% Similarity=0.249 Sum_probs=56.2
Q ss_pred HHHHhhcCCCeEEEEecchhHHHHHHHHHHH----cCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 007402 275 TLLKLELVQKKALIFTNTIDMAFRLKLFLEK----FGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 342 (605)
Q Consensus 275 ~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~----~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~ 342 (605)
.++..-....+++|.|+|...|.+....+.. +++.+..+++..+..++..+++.+..|..+|+|+|..
T Consensus 492 a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ 563 (926)
T TIGR00580 492 AAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHK 563 (926)
T ss_pred HHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHH
Confidence 3343333457899999999999988776654 5788999999999999999999999999999999974
No 280
>PRK14873 primosome assembly protein PriA; Provisional
Probab=93.11 E-value=0.66 Score=53.30 Aligned_cols=78 Identities=19% Similarity=0.126 Sum_probs=64.5
Q ss_pred cchHHHHHHHHHhhcC-CCeEEEEecchhHHHHHHHHHHH-cC-CcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 007402 267 RDKLLYILTLLKLELV-QKKALIFTNTIDMAFRLKLFLEK-FG-IKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDT 343 (605)
Q Consensus 267 ~~k~~~l~~llk~~~~-~~k~IIFv~s~~~~~~L~~~L~~-~g-i~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~ 343 (605)
..|....+.++...+. ++.+||.++.+..+.++...|+. || ..+.++||+++..+|.........|+.+|+|.|..+
T Consensus 171 SGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSA 250 (665)
T PRK14873 171 EDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSA 250 (665)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEccee
Confidence 3566666666655444 45799999999999999888864 56 779999999999999999999999999999999876
Q ss_pred C
Q 007402 344 Q 344 (605)
Q Consensus 344 ~ 344 (605)
.
T Consensus 251 v 251 (665)
T PRK14873 251 V 251 (665)
T ss_pred E
Confidence 4
No 281
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=93.08 E-value=0.53 Score=60.57 Aligned_cols=62 Identities=29% Similarity=0.350 Sum_probs=43.9
Q ss_pred CCChHHHHHHHHHHhCCC--cEEEEcCCCchHHHHHH---HHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHH
Q 007402 47 QKPTLIQQASIPLILEGK--DVVARAKTGSGKTFAYL---LPLLHRLFNESSPKSKLAPAALVLVPTRELCQQV 115 (605)
Q Consensus 47 ~~pt~iQ~~aIp~~l~gk--dvlv~a~TGsGKT~a~~---lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv 115 (605)
..+++.|..||..++.+. -+++.+..|+|||.... -++.+. .. ..+..++.++||-.-+.++
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~-~~------~~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQA-FE------SEQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHH-HH------hcCCeEEEEeChHHHHHHH
Confidence 368999999999998774 47789999999997541 223232 22 2366789999986555443
No 282
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=92.94 E-value=0.51 Score=49.41 Aligned_cols=39 Identities=21% Similarity=0.412 Sum_probs=25.5
Q ss_pred CCceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEe
Q 007402 180 DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMS 219 (605)
Q Consensus 180 ~~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~S 219 (605)
...++|||||+|.+... ....+..++...+..+.+|+++
T Consensus 124 ~~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~Il~~ 162 (337)
T PRK12402 124 ADYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFIIAT 162 (337)
T ss_pred CCCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEEEEe
Confidence 44678999999987532 2445666666666666666544
No 283
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=92.91 E-value=1.5 Score=40.94 Aligned_cols=54 Identities=20% Similarity=0.393 Sum_probs=44.6
Q ss_pred CCCceEEEEeCcchhccCCc--HHHHHHHHhhCCCCceEEEEeeecChhHHHHHHH
Q 007402 179 SDSLKILVLDEADLLLSYGY--EDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKL 232 (605)
Q Consensus 179 l~~l~~lViDEad~i~~~g~--~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~ 232 (605)
....++||+||+=..+.+|+ .+++..+++.-|...-+|+.+-.+|+.+..+..+
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD~ 148 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAADL 148 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCce
Confidence 34689999999999888875 4788888999999999999999999887666553
No 284
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.83 E-value=1.4 Score=44.80 Aligned_cols=53 Identities=13% Similarity=0.191 Sum_probs=29.8
Q ss_pred CceEEEEeCcchhccC-CcHHHHHHHHhhCCCCceEEEEeeecC-hhHHHHHHHh
Q 007402 181 SLKILVLDEADLLLSY-GYEDDLKALSAVIPRGCQCLLMSATSS-SDVDKLKKLI 233 (605)
Q Consensus 181 ~l~~lViDEad~i~~~-g~~~~l~~i~~~lp~~~q~il~SATl~-~~v~~l~~~~ 233 (605)
..++++||-+=+.... ..-..+..++....+..-++.+|||.. .+.....+.|
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~f 208 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNF 208 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHHHh
Confidence 4688999988654321 122334444444444334556899865 4555555554
No 285
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=92.77 E-value=0.31 Score=56.42 Aligned_cols=69 Identities=17% Similarity=0.072 Sum_probs=52.3
Q ss_pred ChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHH
Q 007402 49 PTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALI 123 (605)
Q Consensus 49 pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~ 123 (605)
+++-|.+++.. ....++|.|..|||||.+.+--+...+.... ....++|+++.|+.-+.++.+.+...+
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~----~~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCG----YKARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC----CCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 68889999864 3568999999999999876655555443211 234579999999999999999887765
No 286
>CHL00181 cbbX CbbX; Provisional
Probab=92.74 E-value=1.1 Score=46.22 Aligned_cols=20 Identities=30% Similarity=0.363 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 007402 63 GKDVVARAKTGSGKTFAYLL 82 (605)
Q Consensus 63 gkdvlv~a~TGsGKT~a~~l 82 (605)
|-++++.+|+|+|||..+-.
T Consensus 59 ~~~ill~G~pGtGKT~lAr~ 78 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALK 78 (287)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 44689999999999986543
No 287
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=92.69 E-value=1.7 Score=49.71 Aligned_cols=38 Identities=21% Similarity=0.336 Sum_probs=22.8
Q ss_pred CCceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEE
Q 007402 180 DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLM 218 (605)
Q Consensus 180 ~~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~ 218 (605)
...+++||||||.|....+.. +-+.++.-|....+||.
T Consensus 118 g~~KV~IIDEah~Ls~~a~NA-LLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHSFNA-LLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechHhCCHHHHHH-HHHHHHcCCCCeEEEEe
Confidence 357899999999887544333 33344444444445544
No 288
>PF13173 AAA_14: AAA domain
Probab=92.69 E-value=0.83 Score=40.71 Aligned_cols=38 Identities=26% Similarity=0.336 Sum_probs=27.1
Q ss_pred CceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeee
Q 007402 181 SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSAT 221 (605)
Q Consensus 181 ~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SAT 221 (605)
.-.+|+|||+|.+-+ +...++.+.... .+.++++++-.
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d~~-~~~~ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVDNG-PNIKIILTGSS 98 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHHhc-cCceEEEEccc
Confidence 346899999999864 577788887765 45677765443
No 289
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=92.69 E-value=0.052 Score=49.10 Aligned_cols=14 Identities=36% Similarity=0.465 Sum_probs=12.9
Q ss_pred cEEEEcCCCchHHH
Q 007402 65 DVVARAKTGSGKTF 78 (605)
Q Consensus 65 dvlv~a~TGsGKT~ 78 (605)
+|++.+|+|+|||.
T Consensus 1 ~vlL~G~~G~GKt~ 14 (139)
T PF07728_consen 1 PVLLVGPPGTGKTT 14 (139)
T ss_dssp EEEEEESSSSSHHH
T ss_pred CEEEECCCCCCHHH
Confidence 48999999999997
No 290
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=92.58 E-value=1.2 Score=46.50 Aligned_cols=44 Identities=18% Similarity=0.214 Sum_probs=31.6
Q ss_pred CCCChHHHHHHHHHHhC----CC---cEEEEcCCCchHHHHHHHHHHHHHhh
Q 007402 46 IQKPTLIQQASIPLILE----GK---DVVARAKTGSGKTFAYLLPLLHRLFN 90 (605)
Q Consensus 46 ~~~pt~iQ~~aIp~~l~----gk---dvlv~a~TGsGKT~a~~lpil~~ll~ 90 (605)
+..++|+|..++..+.. |+ -+|+.||.|+||+..+ ..+.+.++-
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA-~~lA~~LlC 52 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVA-LALAEHVLA 52 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHH-HHHHHHHhC
Confidence 35678999999877653 33 4899999999999754 334555554
No 291
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=92.58 E-value=0.77 Score=50.31 Aligned_cols=49 Identities=10% Similarity=0.287 Sum_probs=30.7
Q ss_pred CceEEEEeCcchhccCC-cHHHHHHHHhhC-CCCceEEEEeeecChhHHHH
Q 007402 181 SLKILVLDEADLLLSYG-YEDDLKALSAVI-PRGCQCLLMSATSSSDVDKL 229 (605)
Q Consensus 181 ~l~~lViDEad~i~~~g-~~~~l~~i~~~l-p~~~q~il~SATl~~~v~~l 229 (605)
+.++|+|||+|.+.... ..+.+..++..+ ..+.|+|+.|-+.+.++..+
T Consensus 202 ~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l 252 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAM 252 (445)
T ss_pred cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhh
Confidence 46799999999986542 344555555433 34567776666666655433
No 292
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=92.55 E-value=0.57 Score=50.33 Aligned_cols=16 Identities=31% Similarity=0.449 Sum_probs=14.4
Q ss_pred CcEEEEcCCCchHHHH
Q 007402 64 KDVVARAKTGSGKTFA 79 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a 79 (605)
.++++.||+|+|||..
T Consensus 56 ~~~lI~G~~GtGKT~l 71 (394)
T PRK00411 56 LNVLIYGPPGTGKTTT 71 (394)
T ss_pred CeEEEECCCCCCHHHH
Confidence 5799999999999974
No 293
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=92.53 E-value=0.25 Score=57.76 Aligned_cols=72 Identities=17% Similarity=0.147 Sum_probs=54.7
Q ss_pred CCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHH
Q 007402 47 QKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIE 124 (605)
Q Consensus 47 ~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~ 124 (605)
..+++-|.+|+.. ....++|.|..|||||.+..--+...+.... -...++|+++-|+.-|..+.+.+..++.
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~----i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKN----VAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCC----CCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 4589999999964 3467999999999999986666555443321 2245799999999999999888877653
No 294
>PRK13342 recombination factor protein RarA; Reviewed
Probab=92.51 E-value=1.2 Score=48.45 Aligned_cols=37 Identities=24% Similarity=0.246 Sum_probs=23.3
Q ss_pred ceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecC
Q 007402 182 LKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSS 223 (605)
Q Consensus 182 l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~ 223 (605)
-.+|+|||+|.+.. .....++..+.. ..++++++|-.
T Consensus 93 ~~vL~IDEi~~l~~----~~q~~LL~~le~-~~iilI~att~ 129 (413)
T PRK13342 93 RTILFIDEIHRFNK----AQQDALLPHVED-GTITLIGATTE 129 (413)
T ss_pred ceEEEEechhhhCH----HHHHHHHHHhhc-CcEEEEEeCCC
Confidence 46899999998753 233444455543 45677777643
No 295
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=92.50 E-value=0.52 Score=51.71 Aligned_cols=47 Identities=13% Similarity=0.086 Sum_probs=28.7
Q ss_pred CCceEEEEeCcchhccC-CcHHHHHHHHhhCC-CCceEEEEeeecChhH
Q 007402 180 DSLKILVLDEADLLLSY-GYEDDLKALSAVIP-RGCQCLLMSATSSSDV 226 (605)
Q Consensus 180 ~~l~~lViDEad~i~~~-g~~~~l~~i~~~lp-~~~q~il~SATl~~~v 226 (605)
.+.++|||||+|.+... ...+.+..++..+. .+.|+|+.|-..|...
T Consensus 205 ~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l 253 (450)
T PRK14087 205 CQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELL 253 (450)
T ss_pred ccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 34679999999987543 23455666655543 3456666665555444
No 296
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.47 E-value=0.31 Score=53.85 Aligned_cols=54 Identities=22% Similarity=0.352 Sum_probs=33.1
Q ss_pred hcccCcccCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHH
Q 007402 23 EEEKSFEELGLDLRLVHALNKK---GIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFA 79 (605)
Q Consensus 23 ~~~~~f~~~~L~~~l~~al~~~---g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a 79 (605)
-+..+|++.|-=..+...|... -+++|-.++.-.|.. -..||+++|+|+|||+.
T Consensus 505 VPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~---PsGvLL~GPPGCGKTLl 561 (802)
T KOG0733|consen 505 VPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDA---PSGVLLCGPPGCGKTLL 561 (802)
T ss_pred cCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCC---CCceEEeCCCCccHHHH
Confidence 3467899998656665555431 333333333332211 24699999999999983
No 297
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=92.40 E-value=1.1 Score=52.46 Aligned_cols=44 Identities=18% Similarity=0.268 Sum_probs=27.2
Q ss_pred eEEEEeCcchhccCCc----HHHHHHHHhhCCCCceEEEEeeecChhH
Q 007402 183 KILVLDEADLLLSYGY----EDDLKALSAVIPRGCQCLLMSATSSSDV 226 (605)
Q Consensus 183 ~~lViDEad~i~~~g~----~~~l~~i~~~lp~~~q~il~SATl~~~v 226 (605)
.+|+|||+|.+...|. ..++..++..+-...++.++.||-.++.
T Consensus 280 ~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~ 327 (758)
T PRK11034 280 SILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEF 327 (758)
T ss_pred CEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHH
Confidence 4899999999976542 3445555543333445666667655543
No 298
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=92.39 E-value=1.4 Score=46.86 Aligned_cols=28 Identities=29% Similarity=0.285 Sum_probs=20.1
Q ss_pred CceEEEEeCcchhccCCcHHHHHHHHhhC
Q 007402 181 SLKILVLDEADLLLSYGYEDDLKALSAVI 209 (605)
Q Consensus 181 ~l~~lViDEad~i~~~g~~~~l~~i~~~l 209 (605)
..-+||+||+|.+..... +.+-.|+..-
T Consensus 123 ~~~IvvLDEid~L~~~~~-~~LY~L~r~~ 150 (366)
T COG1474 123 KTVIVILDEVDALVDKDG-EVLYSLLRAP 150 (366)
T ss_pred CeEEEEEcchhhhccccc-hHHHHHHhhc
Confidence 455899999999998754 5555665543
No 299
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=92.35 E-value=1.2 Score=41.75 Aligned_cols=51 Identities=20% Similarity=0.301 Sum_probs=33.5
Q ss_pred CCceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHH
Q 007402 180 DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKK 231 (605)
Q Consensus 180 ~~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~ 231 (605)
...+++||||||.|... -...+.+.++.-|.+..+||+|..+..-+..+..
T Consensus 101 ~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~S 151 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILITNNPSKILPTIRS 151 (162)
T ss_dssp SSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHT
T ss_pred CCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEEECChHHChHHHHh
Confidence 56899999999998654 2455666666667778788777766554444443
No 300
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=92.28 E-value=0.47 Score=44.80 Aligned_cols=54 Identities=22% Similarity=0.407 Sum_probs=44.8
Q ss_pred CCceEEEEeCcchhccCCc--HHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHh
Q 007402 180 DSLKILVLDEADLLLSYGY--EDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLI 233 (605)
Q Consensus 180 ~~l~~lViDEad~i~~~g~--~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~ 233 (605)
..+++||+||+-..+++|+ .+++..+++.-|...-+|+..-..|+.+..+..+.
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD~V 151 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELADLV 151 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCcee
Confidence 4688999999999998885 46788888999999999999988888876666543
No 301
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.21 E-value=1.2 Score=50.71 Aligned_cols=39 Identities=15% Similarity=0.312 Sum_probs=23.2
Q ss_pred CCceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEe
Q 007402 180 DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMS 219 (605)
Q Consensus 180 ~~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~S 219 (605)
...+++||||+|.|....+.. +...++.-|..+.+||.+
T Consensus 123 g~~KV~IIDEvh~Ls~~a~Na-LLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFNA-MLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred CCceEEEEEChhhCCHHHHHH-HHHhcccCCCCeEEEEEE
Confidence 457899999999987544332 333333334445555544
No 302
>PHA02244 ATPase-like protein
Probab=92.19 E-value=1.6 Score=46.18 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=18.3
Q ss_pred HHHhCCCcEEEEcCCCchHHHH
Q 007402 58 PLILEGKDVVARAKTGSGKTFA 79 (605)
Q Consensus 58 p~~l~gkdvlv~a~TGsGKT~a 79 (605)
.++..+..+++.+|||+|||..
T Consensus 114 r~l~~~~PVLL~GppGtGKTtL 135 (383)
T PHA02244 114 KIVNANIPVFLKGGAGSGKNHI 135 (383)
T ss_pred HHHhcCCCEEEECCCCCCHHHH
Confidence 4455678999999999999973
No 303
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=92.19 E-value=0.83 Score=51.81 Aligned_cols=72 Identities=21% Similarity=0.306 Sum_probs=55.8
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHH----cCCCcEEEECCchHHHHHhcCCCC
Q 007402 99 APAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL----AGPPDIVIATPGCMPKCLSTGVLQ 174 (605)
Q Consensus 99 ~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l----~~~~dIvV~TP~~l~~~l~~~~~~ 174 (605)
+.++||.|+|++.|+++++.+... ++.+..++|+++.......+ .+..+||||| +.+..+
T Consensus 257 ~~k~LVF~nt~~~ae~l~~~L~~~--------g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaT-----dv~arG--- 320 (572)
T PRK04537 257 GARTMVFVNTKAFVERVARTLERH--------GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVAT-----DVAARG--- 320 (572)
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHc--------CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe-----hhhhcC---
Confidence 567999999999999999887653 67889999998876554433 3678999999 566666
Q ss_pred CcccCCCceEEEEe
Q 007402 175 SKSFSDSLKILVLD 188 (605)
Q Consensus 175 ~~~~l~~l~~lViD 188 (605)
+++.+++++|.-
T Consensus 321 --IDip~V~~VIny 332 (572)
T PRK04537 321 --LHIDGVKYVYNY 332 (572)
T ss_pred --CCccCCCEEEEc
Confidence 677778877653
No 304
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=92.02 E-value=0.83 Score=51.42 Aligned_cols=75 Identities=27% Similarity=0.385 Sum_probs=62.2
Q ss_pred HHHHHHHHHhhcCCCeEEEEecchhHHH----HHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCC
Q 007402 270 LLYILTLLKLELVQKKALIFTNTIDMAF----RLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ 344 (605)
Q Consensus 270 ~~~l~~llk~~~~~~k~IIFv~s~~~~~----~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~ 344 (605)
...+++++.....+.++..-++|.--|+ .+..+|..+|+++..|.|.+....|..++++..+|.++++|.|-.+-
T Consensus 298 vVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALi 376 (677)
T COG1200 298 VVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALI 376 (677)
T ss_pred HHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhh
Confidence 3455566665556779999999975554 45667777899999999999999999999999999999999998864
No 305
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=92.01 E-value=2.1 Score=50.20 Aligned_cols=17 Identities=24% Similarity=0.280 Sum_probs=14.9
Q ss_pred CcEEEEcCCCchHHHHH
Q 007402 64 KDVVARAKTGSGKTFAY 80 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a~ 80 (605)
.++|+.+|+|+|||...
T Consensus 204 ~n~lL~G~pG~GKT~l~ 220 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIA 220 (731)
T ss_pred CceEEECCCCCCHHHHH
Confidence 58999999999999753
No 306
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=91.99 E-value=1.5 Score=49.80 Aligned_cols=40 Identities=18% Similarity=0.255 Sum_probs=25.0
Q ss_pred CCCceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEe
Q 007402 179 SDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMS 219 (605)
Q Consensus 179 l~~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~S 219 (605)
....+++||||+|.|.... .+.+...++.-|..+.+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~a-~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHHH-HHHHHHHHHhCCCCeEEEEEe
Confidence 4567899999999986432 223333444455566666654
No 307
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.98 E-value=1.3 Score=50.36 Aligned_cols=41 Identities=15% Similarity=0.324 Sum_probs=25.3
Q ss_pred CCceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeee
Q 007402 180 DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSAT 221 (605)
Q Consensus 180 ~~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SAT 221 (605)
...+++||||+|.|....+.. +.+.++.-|.++.+||.|--
T Consensus 123 gr~KViIIDEah~Ls~~AaNA-LLKTLEEPP~~v~FILaTte 163 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHAFNA-MLKTLEEPPEHVKFILATTD 163 (700)
T ss_pred CCceEEEEEChHhcCHHHHHH-HHHhhccCCCCceEEEEeCC
Confidence 357899999999987554332 33334444556666666543
No 308
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=91.93 E-value=0.62 Score=52.55 Aligned_cols=46 Identities=15% Similarity=0.241 Sum_probs=29.9
Q ss_pred CceEEEEeCcchhccCC-cHHHHHHHHhhCCC-CceEEEEeeecChhH
Q 007402 181 SLKILVLDEADLLLSYG-YEDDLKALSAVIPR-GCQCLLMSATSSSDV 226 (605)
Q Consensus 181 ~l~~lViDEad~i~~~g-~~~~l~~i~~~lp~-~~q~il~SATl~~~v 226 (605)
++++|||||+|.+.... ..+.+..++..+.. +.++|+.|-..+.++
T Consensus 377 ~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL 424 (617)
T PRK14086 377 EMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQL 424 (617)
T ss_pred cCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhh
Confidence 46789999999886543 34556666655543 567776665555554
No 309
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.93 E-value=1.9 Score=45.87 Aligned_cols=22 Identities=23% Similarity=0.151 Sum_probs=17.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHH
Q 007402 63 GKDVVARAKTGSGKTFAYLLPL 84 (605)
Q Consensus 63 gkdvlv~a~TGsGKT~a~~lpi 84 (605)
++-+++.+|||+|||....--+
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4568899999999998654444
No 310
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=91.91 E-value=1.1 Score=48.98 Aligned_cols=49 Identities=14% Similarity=0.304 Sum_probs=28.3
Q ss_pred CceEEEEeCcchhccCC-cHHHHHHHHhhCC-CCceEEEEeeecChhHHHH
Q 007402 181 SLKILVLDEADLLLSYG-YEDDLKALSAVIP-RGCQCLLMSATSSSDVDKL 229 (605)
Q Consensus 181 ~l~~lViDEad~i~~~g-~~~~l~~i~~~lp-~~~q~il~SATl~~~v~~l 229 (605)
+.++|+|||+|.+.+.. ....+..++..+- .+.|+++.|-..+..+..+
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l 244 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEF 244 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHH
Confidence 35689999999876542 2344544544332 3456665555555555444
No 311
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=91.89 E-value=0.68 Score=54.15 Aligned_cols=73 Identities=25% Similarity=0.391 Sum_probs=55.5
Q ss_pred hHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHc----C-CcEEE-EcCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 007402 269 KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKF----G-IKSAI-LNAELPQNSRLHILEEFNAGLFDYLIATDD 342 (605)
Q Consensus 269 k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~----g-i~~~~-l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~ 342 (605)
-|.++++++-. ..+++++|.++|..-+.+...-|+++ | ..+.+ +||.||..++..++++|.+|.++|||+|..
T Consensus 112 Tfg~~~sl~~a-~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~ 190 (1187)
T COG1110 112 TFGLLMSLYLA-KKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQ 190 (1187)
T ss_pred HHHHHHHHHHH-hcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHH
Confidence 34455555432 33579999999987776666666655 3 44433 899999999999999999999999999985
No 312
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.88 E-value=1.4 Score=50.17 Aligned_cols=39 Identities=18% Similarity=0.349 Sum_probs=24.8
Q ss_pred CCceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEe
Q 007402 180 DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMS 219 (605)
Q Consensus 180 ~~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~S 219 (605)
...+++||||||.|....+ ..+..+++.-|....+|+.+
T Consensus 117 gk~KV~IIDEVh~LS~~A~-NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSF-NALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred CCcEEEEEechHhcCHHHH-HHHHHHHhcCCCCcEEEEEE
Confidence 3568999999998765433 34555555555555555544
No 313
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=91.84 E-value=3.6 Score=45.81 Aligned_cols=19 Identities=21% Similarity=0.181 Sum_probs=15.8
Q ss_pred cEEEEcCCCchHHHHHHHH
Q 007402 65 DVVARAKTGSGKTFAYLLP 83 (605)
Q Consensus 65 dvlv~a~TGsGKT~a~~lp 83 (605)
.+|+.||.|+|||.++-+.
T Consensus 45 a~Lf~Gp~G~GKTT~Aril 63 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARII 63 (507)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 6899999999999865443
No 314
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=91.83 E-value=1.4 Score=46.32 Aligned_cols=40 Identities=18% Similarity=0.022 Sum_probs=29.2
Q ss_pred ChHHHHHHHHHHhCCC----cEEEEcCCCchHHHHHHHHHHHHHh
Q 007402 49 PTLIQQASIPLILEGK----DVVARAKTGSGKTFAYLLPLLHRLF 89 (605)
Q Consensus 49 pt~iQ~~aIp~~l~gk----dvlv~a~TGsGKT~a~~lpil~~ll 89 (605)
.+|+|...+..++... -.|+.||.|.|||..+.. +.+.++
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~-~A~~ll 47 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAER-LAAALL 47 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHH-HHHHHc
Confidence 4788888888777552 488999999999975433 444444
No 315
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=91.82 E-value=0.35 Score=50.22 Aligned_cols=62 Identities=18% Similarity=0.067 Sum_probs=45.3
Q ss_pred CCCCCChHHHHHHHHHHhCCC-cEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHH
Q 007402 44 KGIQKPTLIQQASIPLILEGK-DVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQ 114 (605)
Q Consensus 44 ~g~~~pt~iQ~~aIp~~l~gk-dvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Q 114 (605)
..|...++-|...+-.+..++ ++|+++.||||||.. + ..++... ...-|+|.+=-|.||-.+
T Consensus 153 i~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl--L---Nal~~~i----~~~eRvItiEDtaELql~ 215 (355)
T COG4962 153 IIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL--L---NALSGFI----DSDERVITIEDTAELQLA 215 (355)
T ss_pred HHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH--H---HHHHhcC----CCcccEEEEeehhhhccC
Confidence 366789999999999888886 999999999999972 2 2222221 223478888888887543
No 316
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.80 E-value=1.9 Score=46.63 Aligned_cols=42 Identities=19% Similarity=0.106 Sum_probs=25.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcH
Q 007402 63 GKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTR 109 (605)
Q Consensus 63 gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtr 109 (605)
|+-+.+.+|||+|||......+-..+... .....++|...+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~-----~~~~v~~i~~d~~ 232 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRH-----GADKVALLTTDSY 232 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc-----CCCeEEEEecCCc
Confidence 45688999999999986654443333221 1122356666653
No 317
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=91.79 E-value=1.2 Score=46.45 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=17.6
Q ss_pred HHhCCCcEEEEcCCCchHHHH
Q 007402 59 LILEGKDVVARAKTGSGKTFA 79 (605)
Q Consensus 59 ~~l~gkdvlv~a~TGsGKT~a 79 (605)
.+..++++++.+++|+|||..
T Consensus 60 ~l~~~~~ilL~G~pGtGKTtl 80 (327)
T TIGR01650 60 GFAYDRRVMVQGYHGTGKSTH 80 (327)
T ss_pred HHhcCCcEEEEeCCCChHHHH
Confidence 344678999999999999973
No 318
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=91.79 E-value=2 Score=47.35 Aligned_cols=97 Identities=16% Similarity=0.225 Sum_probs=73.8
Q ss_pred CCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHH--
Q 007402 72 TGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAA-- 149 (605)
Q Consensus 72 TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~-- 149 (605)
.++|++..-++.+.+.+-. .-.|.+||.|-+.|-|.|++..+..+ . ++.+..++|..+.......
T Consensus 366 vF~gse~~K~lA~rq~v~~------g~~PP~lIfVQs~eRak~L~~~L~~~----~---~i~v~vIh~e~~~~qrde~~~ 432 (593)
T KOG0344|consen 366 VFCGSEKGKLLALRQLVAS------GFKPPVLIFVQSKERAKQLFEELEIY----D---NINVDVIHGERSQKQRDETME 432 (593)
T ss_pred eeeecchhHHHHHHHHHhc------cCCCCeEEEEecHHHHHHHHHHhhhc----c---CcceeeEecccchhHHHHHHH
Confidence 4788888777777776655 24677999999999999999988722 1 7889999998765443332
Q ss_pred --HcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcc
Q 007402 150 --LAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 191 (605)
Q Consensus 150 --l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad 191 (605)
-.+...++||| +.+.+| +++.++.+||.+..-
T Consensus 433 ~FR~g~IwvLicT-----dll~RG-----iDf~gvn~VInyD~p 466 (593)
T KOG0344|consen 433 RFRIGKIWVLICT-----DLLARG-----IDFKGVNLVINYDFP 466 (593)
T ss_pred HHhccCeeEEEeh-----hhhhcc-----ccccCcceEEecCCC
Confidence 23678999999 777777 889999999996553
No 319
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=91.71 E-value=1.1 Score=50.66 Aligned_cols=135 Identities=16% Similarity=0.275 Sum_probs=81.6
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCH
Q 007402 64 KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPA 143 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~ 143 (605)
|-.++..|==.|||.... +++..++.. ..+.++++.+|.+.-++.+++.+...+........+.. +.| ..
T Consensus 255 k~tVflVPRR~GKTwivv-~iI~~ll~s-----~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~--vkG-e~- 324 (738)
T PHA03368 255 RATVFLVPRRHGKTWFLV-PLIALALAT-----FRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDH--VKG-ET- 324 (738)
T ss_pred cceEEEecccCCchhhHH-HHHHHHHHh-----CCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheee--ecC-cE-
Confidence 556889999999998655 777666642 34888999999999999999999887663211001111 122 10
Q ss_pred HHHHHHHcCC--CcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCcHHHHHHHHhhC-CCCceEEEEee
Q 007402 144 SDLRAALAGP--PDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVI-PRGCQCLLMSA 220 (605)
Q Consensus 144 ~~~~~~l~~~--~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~~~l~~i~~~l-p~~~q~il~SA 220 (605)
..-.+.++ +.|..++- .+. +..-=.+++++|||||+.+-. +.+..++-.+ ..++++|++|.
T Consensus 325 --I~i~f~nG~kstI~FaSa-------rnt---NsiRGqtfDLLIVDEAqFIk~----~al~~ilp~l~~~n~k~I~ISS 388 (738)
T PHA03368 325 --ISFSFPDGSRSTIVFASS-------HNT---NGIRGQDFNLLFVDEANFIRP----DAVQTIMGFLNQTNCKIIFVSS 388 (738)
T ss_pred --EEEEecCCCccEEEEEec-------cCC---CCccCCcccEEEEechhhCCH----HHHHHHHHHHhccCccEEEEec
Confidence 00001111 24444420 110 112224689999999998864 3444444332 24889999998
Q ss_pred ecCh
Q 007402 221 TSSS 224 (605)
Q Consensus 221 Tl~~ 224 (605)
|-+.
T Consensus 389 ~Ns~ 392 (738)
T PHA03368 389 TNTG 392 (738)
T ss_pred CCCC
Confidence 8554
No 320
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=91.68 E-value=0.57 Score=53.93 Aligned_cols=80 Identities=21% Similarity=0.282 Sum_probs=66.4
Q ss_pred cccchHHHHHHHHHhhcCCC-eEEEEecchhHHHHHHHHHH-HcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 007402 265 SERDKLLYILTLLKLELVQK-KALIFTNTIDMAFRLKLFLE-KFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 342 (605)
Q Consensus 265 ~~~~k~~~l~~llk~~~~~~-k~IIFv~s~~~~~~L~~~L~-~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~ 342 (605)
....|....+.++...+.+| .+||.|+.+....++...|+ .||.++.++||+|+..+|.....+...|+.+|+|.|..
T Consensus 226 TGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRS 305 (730)
T COG1198 226 TGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRS 305 (730)
T ss_pred CCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEech
Confidence 34556666666666555555 78999999999888777665 58999999999999999999999999999999999987
Q ss_pred CC
Q 007402 343 TQ 344 (605)
Q Consensus 343 ~~ 344 (605)
+-
T Consensus 306 Al 307 (730)
T COG1198 306 AL 307 (730)
T ss_pred hh
Confidence 63
No 321
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=91.63 E-value=0.63 Score=55.41 Aligned_cols=94 Identities=15% Similarity=0.210 Sum_probs=73.9
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHH----HcCCCcEEEECCchHHHHHhcCCC
Q 007402 98 LAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAA----LAGPPDIVIATPGCMPKCLSTGVL 173 (605)
Q Consensus 98 ~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~----l~~~~dIvV~TP~~l~~~l~~~~~ 173 (605)
.|.++.+|+|..+=..++.+.++.+.. ..++...+|.+........ ..+.+||+||| ..+++|
T Consensus 802 RgGQvfYv~NrV~~Ie~~~~~L~~LVP------EarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~T-----TIIEtG-- 868 (1139)
T COG1197 802 RGGQVFYVHNRVESIEKKAERLRELVP------EARIAVAHGQMRERELEEVMLDFYNGEYDVLVCT-----TIIETG-- 868 (1139)
T ss_pred cCCEEEEEecchhhHHHHHHHHHHhCC------ceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEe-----eeeecC--
Confidence 478899999999999999999998865 7899999999987665543 44789999999 455655
Q ss_pred CCcccCCCceEEEEeCcchhccCCcHHHHHHHHhhCCC
Q 007402 174 QSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPR 211 (605)
Q Consensus 174 ~~~~~l~~l~~lViDEad~i~~~g~~~~l~~i~~~lp~ 211 (605)
+++.+..++||+-||.+. -.++.++.....+
T Consensus 869 ---IDIPnANTiIIe~AD~fG----LsQLyQLRGRVGR 899 (1139)
T COG1197 869 ---IDIPNANTIIIERADKFG----LAQLYQLRGRVGR 899 (1139)
T ss_pred ---cCCCCCceEEEecccccc----HHHHHHhccccCC
Confidence 888899999999999864 3445555444443
No 322
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.56 E-value=2.7 Score=44.80 Aligned_cols=39 Identities=18% Similarity=0.334 Sum_probs=23.2
Q ss_pred CCceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEe
Q 007402 180 DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMS 219 (605)
Q Consensus 180 ~~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~S 219 (605)
...+++||||||.+....+. .+-..++.-|....+|+.+
T Consensus 118 ~~~kviIIDEa~~l~~~a~n-aLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFN-ALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred CCceEEEEEChhhcCHHHHH-HHHHHHhcCCCCeEEEEEc
Confidence 45679999999998643322 2333334444555566544
No 323
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=91.54 E-value=2.3 Score=46.45 Aligned_cols=49 Identities=14% Similarity=0.218 Sum_probs=29.2
Q ss_pred eEEEEeCcchhcc-CCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHH
Q 007402 183 KILVLDEADLLLS-YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKK 231 (605)
Q Consensus 183 ~~lViDEad~i~~-~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~ 231 (605)
++||||.|-+... ...-+.+..+.....+..-++.++||...+......
T Consensus 177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~ 226 (437)
T PRK00771 177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAK 226 (437)
T ss_pred CEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHH
Confidence 7899999954321 123345556666655566677778887654433333
No 324
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.46 E-value=1.9 Score=48.78 Aligned_cols=39 Identities=18% Similarity=0.411 Sum_probs=24.3
Q ss_pred CCceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEe
Q 007402 180 DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMS 219 (605)
Q Consensus 180 ~~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~S 219 (605)
...+++||||||.|....+ +.+...++.-|...-+|+.+
T Consensus 117 ~~~KVvIIDEah~Lt~~A~-NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAGF-NALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred CCceEEEEECCCcCCHHHH-HHHHHHHhcCCCCeEEEEEe
Confidence 4678999999999875432 23344444445555555544
No 325
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=91.44 E-value=0.7 Score=52.14 Aligned_cols=72 Identities=15% Similarity=0.159 Sum_probs=51.4
Q ss_pred CChHHHHHHHHHHhCC--CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHH-HHHHHHHH
Q 007402 48 KPTLIQQASIPLILEG--KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVY-SEVMALIE 124 (605)
Q Consensus 48 ~pt~iQ~~aIp~~l~g--kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~-~~~~~l~~ 124 (605)
.-+|+|.+....+..- +.|++..++-+|||.+.+. ++-..+. .....+|++.||.+++.... ..+..++.
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n-~~g~~i~------~~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~ 88 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLN-WIGYSID------QDPGPMLYVQPTDDAAKDFSKERLDPMIR 88 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHh-hceEEEE------eCCCCEEEEEEcHHHHHHHHHHHHHHHHH
Confidence 5689999888776554 5799999999999985443 3333332 22455999999999999887 44666555
Q ss_pred Hh
Q 007402 125 LC 126 (605)
Q Consensus 125 ~~ 126 (605)
.+
T Consensus 89 ~s 90 (557)
T PF05876_consen 89 AS 90 (557)
T ss_pred hC
Confidence 43
No 326
>PRK13764 ATPase; Provisional
Probab=91.42 E-value=0.92 Score=51.28 Aligned_cols=26 Identities=15% Similarity=0.231 Sum_probs=19.2
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHH
Q 007402 62 EGKDVVARAKTGSGKTFAYLLPLLHRL 88 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a~~lpil~~l 88 (605)
.++.++++++||||||.. +-.++..+
T Consensus 256 ~~~~ILIsG~TGSGKTTl-l~AL~~~i 281 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTF-AQALAEFY 281 (602)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHH
Confidence 467899999999999963 34444444
No 327
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=91.40 E-value=1.5 Score=50.86 Aligned_cols=41 Identities=22% Similarity=0.171 Sum_probs=25.6
Q ss_pred ceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecChhHH
Q 007402 182 LKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVD 227 (605)
Q Consensus 182 l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~ 227 (605)
..+|||||+|.+... .-..++..+. ..++++++||-.+...
T Consensus 110 ~~IL~IDEIh~Ln~~----qQdaLL~~lE-~g~IiLI~aTTenp~~ 150 (725)
T PRK13341 110 RTILFIDEVHRFNKA----QQDALLPWVE-NGTITLIGATTENPYF 150 (725)
T ss_pred ceEEEEeChhhCCHH----HHHHHHHHhc-CceEEEEEecCCChHh
Confidence 458999999987532 2233444443 4578888888654433
No 328
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=91.36 E-value=3.9 Score=44.41 Aligned_cols=19 Identities=26% Similarity=0.163 Sum_probs=14.8
Q ss_pred cEEEEcCCCchHHHHHHHH
Q 007402 65 DVVARAKTGSGKTFAYLLP 83 (605)
Q Consensus 65 dvlv~a~TGsGKT~a~~lp 83 (605)
-+++++++|+|||....-.
T Consensus 102 vi~lvG~~GvGKTTtaaKL 120 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKL 120 (429)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999765433
No 329
>PRK06904 replicative DNA helicase; Validated
Probab=91.34 E-value=1.1 Score=49.53 Aligned_cols=117 Identities=15% Similarity=0.247 Sum_probs=57.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEE-eC-C
Q 007402 63 GKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQL-TS-S 140 (605)
Q Consensus 63 gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l-~~-~ 140 (605)
|.=+++.|+||.|||. |++-++..+... .+..++|+.. ..-..|+..++-.... ++....+ .| .
T Consensus 221 G~LiiIaarPg~GKTa-falnia~~~a~~------~g~~Vl~fSl-EMs~~ql~~Rlla~~s------~v~~~~i~~g~~ 286 (472)
T PRK06904 221 SDLIIVAARPSMGKTT-FAMNLCENAAMA------SEKPVLVFSL-EMPAEQIMMRMLASLS------RVDQTKIRTGQN 286 (472)
T ss_pred CcEEEEEeCCCCChHH-HHHHHHHHHHHh------cCCeEEEEec-cCCHHHHHHHHHHhhC------CCCHHHhccCCC
Confidence 3457889999999996 555555544321 1445666653 2334455544433221 1221111 23 2
Q ss_pred CCHHHHH------HHHcCCCcEEEE-CCc----hHHHHHhcCCCCCcccCCCceEEEEeCcchhccCC
Q 007402 141 MPASDLR------AALAGPPDIVIA-TPG----CMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYG 197 (605)
Q Consensus 141 ~~~~~~~------~~l~~~~dIvV~-TP~----~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g 197 (605)
.+...+. ..+...+.+.|- +|+ .+...+..-. .....+++||||=.++|...+
T Consensus 287 l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~----~~~~~~~lvvIDYLqli~~~~ 350 (472)
T PRK06904 287 LDQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVY----RENGGLSLIMVDYLQLMRAPG 350 (472)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHH----HhCCCCCEEEEecHHhcCCCC
Confidence 3333322 223334556553 333 3332222110 011247899999999886443
No 330
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.27 E-value=0.77 Score=50.37 Aligned_cols=18 Identities=22% Similarity=0.172 Sum_probs=15.0
Q ss_pred cEEEEcCCCchHHHHHHH
Q 007402 65 DVVARAKTGSGKTFAYLL 82 (605)
Q Consensus 65 dvlv~a~TGsGKT~a~~l 82 (605)
-+|+.||.|+|||.++.+
T Consensus 42 a~Lf~GP~GtGKTTlAri 59 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARI 59 (484)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 379999999999986544
No 331
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=91.26 E-value=4.4 Score=41.32 Aligned_cols=22 Identities=18% Similarity=0.057 Sum_probs=16.6
Q ss_pred CcEEEEcCCCchHHHHHHHHHH
Q 007402 64 KDVVARAKTGSGKTFAYLLPLL 85 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a~~lpil 85 (605)
+-+++.+++|+|||....-.+.
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~ 94 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLAN 94 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 4577889999999986555443
No 332
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=91.18 E-value=0.88 Score=47.21 Aligned_cols=40 Identities=23% Similarity=0.361 Sum_probs=23.8
Q ss_pred CCCceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEe
Q 007402 179 SDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMS 219 (605)
Q Consensus 179 l~~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~S 219 (605)
....+++||||||.|... -...+...++.-|.+..+|+.+
T Consensus 107 ~~~~kviiidead~mt~~-A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 107 EGGYKVVIIDEADKLTED-AANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred CCCceEEEeCcHHHHhHH-HHHHHHHHhccCCCCeEEEEEc
Confidence 356889999999998752 2333333444334445555444
No 333
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=91.14 E-value=2.2 Score=48.93 Aligned_cols=39 Identities=15% Similarity=0.257 Sum_probs=24.5
Q ss_pred CCceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEe
Q 007402 180 DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMS 219 (605)
Q Consensus 180 ~~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~S 219 (605)
...+++||||+|.|.... ...+.+.++.-|..+.+|+.+
T Consensus 118 gk~KVIIIDEad~Ls~~A-~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred CCcEEEEEECccccCHHH-HHHHHHHHHhCCCCcEEEEEe
Confidence 457899999999865432 233444445455666666655
No 334
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.13 E-value=2.2 Score=47.00 Aligned_cols=24 Identities=25% Similarity=0.131 Sum_probs=18.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHH
Q 007402 63 GKDVVARAKTGSGKTFAYLLPLLH 86 (605)
Q Consensus 63 gkdvlv~a~TGsGKT~a~~lpil~ 86 (605)
|+-+.+.+|||+|||.+....+..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHH
Confidence 445789999999999976554433
No 335
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.13 E-value=3 Score=42.47 Aligned_cols=129 Identities=19% Similarity=0.291 Sum_probs=73.4
Q ss_pred HHHHhCCC-----cEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcc
Q 007402 57 IPLILEGK-----DVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQ 131 (605)
Q Consensus 57 Ip~~l~gk-----dvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~ 131 (605)
+|.+..|+ .+|+-+|+|+||+.. --++ .. . ....++-|.+..|+..|.-+-+++...+
T Consensus 155 FPqlFtGkR~PwrgiLLyGPPGTGKSYL--AKAV---AT------E-AnSTFFSvSSSDLvSKWmGESEkLVknL----- 217 (439)
T KOG0739|consen 155 FPQLFTGKRKPWRGILLYGPPGTGKSYL--AKAV---AT------E-ANSTFFSVSSSDLVSKWMGESEKLVKNL----- 217 (439)
T ss_pred chhhhcCCCCcceeEEEeCCCCCcHHHH--HHHH---Hh------h-cCCceEEeehHHHHHHHhccHHHHHHHH-----
Confidence 36677774 599999999999962 2222 11 1 2257788888888877766555554311
Q ss_pred eEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCcH---HHHHHHHh-
Q 007402 132 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE---DDLKALSA- 207 (605)
Q Consensus 132 i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~---~~l~~i~~- 207 (605)
..+.+. +.-++|.|||+|.+...+-+ +..+.|..
T Consensus 218 ---------------------------------FemARe---------~kPSIIFiDEiDslcg~r~enEseasRRIKTE 255 (439)
T KOG0739|consen 218 ---------------------------------FEMARE---------NKPSIIFIDEIDSLCGSRSENESEASRRIKTE 255 (439)
T ss_pred ---------------------------------HHHHHh---------cCCcEEEeehhhhhccCCCCCchHHHHHHHHH
Confidence 112222 23458999999988755422 22222211
Q ss_pred ---hC----CCCceEEEEeeecChhH-HHHHHHhcCCCeEEEcCC
Q 007402 208 ---VI----PRGCQCLLMSATSSSDV-DKLKKLILHNPYILTLPE 244 (605)
Q Consensus 208 ---~l----p~~~q~il~SATl~~~v-~~l~~~~l~~p~~i~l~~ 244 (605)
.+ ..+--++.+.||-.+.+ +.....-+...+.|.+++
T Consensus 256 fLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe 300 (439)
T KOG0739|consen 256 FLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPE 300 (439)
T ss_pred HHHhhhccccCCCceEEEecCCCchhHHHHHHHHhhcceeccCCc
Confidence 11 12345777889865554 444444455555555544
No 336
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=91.11 E-value=1.4 Score=46.82 Aligned_cols=17 Identities=41% Similarity=0.505 Sum_probs=14.8
Q ss_pred CcEEEEcCCCchHHHHH
Q 007402 64 KDVVARAKTGSGKTFAY 80 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a~ 80 (605)
..+++.||+|+|||.+.
T Consensus 41 ~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CcEEEECCCCCCHHHHH
Confidence 57999999999999753
No 337
>PRK10436 hypothetical protein; Provisional
Probab=91.08 E-value=0.58 Score=51.40 Aligned_cols=45 Identities=31% Similarity=0.366 Sum_probs=27.6
Q ss_pred HHHHCCCCCChHHHHHHHHHHhC--CCcEEEEcCCCchHHHHHHHHHHHHH
Q 007402 40 ALNKKGIQKPTLIQQASIPLILE--GKDVVARAKTGSGKTFAYLLPLLHRL 88 (605)
Q Consensus 40 al~~~g~~~pt~iQ~~aIp~~l~--gkdvlv~a~TGsGKT~a~~lpil~~l 88 (605)
.|.++|+ .+-|.+.+..++. +.-+|+.+|||||||... ..++..+
T Consensus 196 ~L~~LG~---~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~ 242 (462)
T PRK10436 196 DLETLGM---TPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTL 242 (462)
T ss_pred CHHHcCc---CHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhh
Confidence 3455564 3445555554443 346899999999999743 3345544
No 338
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=91.01 E-value=3.5 Score=41.58 Aligned_cols=33 Identities=15% Similarity=0.257 Sum_probs=22.9
Q ss_pred CChHHHHHHHHHHh----CCC-cEEEEcCCCchHHHHH
Q 007402 48 KPTLIQQASIPLIL----EGK-DVVARAKTGSGKTFAY 80 (605)
Q Consensus 48 ~pt~iQ~~aIp~~l----~gk-dvlv~a~TGsGKT~a~ 80 (605)
-+++.+.+++..+. .+. -+++.|++|+|||...
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH
Confidence 45666666665543 223 5889999999999743
No 339
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=90.97 E-value=2.3 Score=50.70 Aligned_cols=45 Identities=20% Similarity=0.142 Sum_probs=26.0
Q ss_pred ceEEEEeCcchhccCCcH---HHHHHHHhhCCCCceEEEEeeecChhH
Q 007402 182 LKILVLDEADLLLSYGYE---DDLKALSAVIPRGCQCLLMSATSSSDV 226 (605)
Q Consensus 182 l~~lViDEad~i~~~g~~---~~l~~i~~~lp~~~q~il~SATl~~~v 226 (605)
-.+|+|||+|.+...|.. .+...++...-....+.++.||-.++.
T Consensus 267 ~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~ 314 (852)
T TIGR03346 267 QIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEY 314 (852)
T ss_pred CeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHHH
Confidence 458999999999854321 233444433223445666666655543
No 340
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=90.87 E-value=1.9 Score=44.32 Aligned_cols=18 Identities=22% Similarity=0.239 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCchHHHHH
Q 007402 63 GKDVVARAKTGSGKTFAY 80 (605)
Q Consensus 63 gkdvlv~a~TGsGKT~a~ 80 (605)
+.++++.||+|+|||.++
T Consensus 58 ~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 458999999999999755
No 341
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=90.67 E-value=0.15 Score=62.64 Aligned_cols=95 Identities=22% Similarity=0.334 Sum_probs=75.6
Q ss_pred eEEEEecchhHHHHHHHHHHHcC-CcEEEEcCCCC-----------HHHHHHHHHHHHcCCCcEEEEcCCCCcccccccC
Q 007402 285 KALIFTNTIDMAFRLKLFLEKFG-IKSAILNAELP-----------QNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSD 352 (605)
Q Consensus 285 k~IIFv~s~~~~~~L~~~L~~~g-i~~~~l~~~l~-----------~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~ 352 (605)
-.||||+....+|.+.+.+...+ .....+.|.+. ...+..++..|....+++|++|.+++
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~-------- 365 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLE-------- 365 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHH--------
Confidence 46999999999999988886542 22222333332 12356788899999999999999977
Q ss_pred CCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCC
Q 007402 353 EGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYN 412 (605)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~ 412 (605)
.|+|++.++.|+.+|.|....+|+|+.||+-+++.
T Consensus 366 -------------------------e~~d~~~~~~~~~~~~~~~~~~~vq~~~r~~~~~~ 400 (1606)
T KOG0701|consen 366 -------------------------EGVDVPKCNLVVLFDAPTYYRSYVQKKGRARAADS 400 (1606)
T ss_pred -------------------------hhcchhhhhhheeccCcchHHHHHHhhcccccchh
Confidence 69999999999999999999999999999966543
No 342
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=90.61 E-value=0.75 Score=46.72 Aligned_cols=45 Identities=29% Similarity=0.324 Sum_probs=29.0
Q ss_pred HHHHCCCCCChHHHHHHHHHHhC-C-CcEEEEcCCCchHHHHHHHHHHHHH
Q 007402 40 ALNKKGIQKPTLIQQASIPLILE-G-KDVVARAKTGSGKTFAYLLPLLHRL 88 (605)
Q Consensus 40 al~~~g~~~pt~iQ~~aIp~~l~-g-kdvlv~a~TGsGKT~a~~lpil~~l 88 (605)
.|.++|+ .+-|.+.+..++. . .-+++.++||||||... ..++..+
T Consensus 58 ~l~~lg~---~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l-~all~~i 104 (264)
T cd01129 58 DLEKLGL---KPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSEL 104 (264)
T ss_pred CHHHcCC---CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHhhh
Confidence 4667775 4456666655554 3 45899999999999743 3344443
No 343
>PRK08939 primosomal protein DnaI; Reviewed
Probab=90.58 E-value=1.6 Score=45.38 Aligned_cols=18 Identities=22% Similarity=0.322 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCchHHHHH
Q 007402 63 GKDVVARAKTGSGKTFAY 80 (605)
Q Consensus 63 gkdvlv~a~TGsGKT~a~ 80 (605)
++.+++.|++|+|||...
T Consensus 156 ~~gl~L~G~~G~GKThLa 173 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLL 173 (306)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 468999999999999743
No 344
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=90.51 E-value=1.1 Score=49.31 Aligned_cols=72 Identities=13% Similarity=0.248 Sum_probs=53.1
Q ss_pred CCCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHc----CCCcEEEECCchHHHHHhcCC
Q 007402 97 KLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALA----GPPDIVIATPGCMPKCLSTGV 172 (605)
Q Consensus 97 ~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~----~~~dIvV~TP~~l~~~l~~~~ 172 (605)
..+.++||.|-|+.-|.++...+... ++.+..++|+.+.......|. +.+.|+|+| +...++
T Consensus 339 ~~~~KvIIFc~tkr~~~~l~~~l~~~--------~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVAT-----dVAaRG- 404 (519)
T KOG0331|consen 339 DSEGKVIIFCETKRTCDELARNLRRK--------GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVAT-----DVAARG- 404 (519)
T ss_pred cCCCcEEEEecchhhHHHHHHHHHhc--------CcceeeecccccHHHHHHHHHhcccCCcceEEEc-----cccccc-
Confidence 34678999999999999988877754 478899999988766555554 678999999 333333
Q ss_pred CCCcccCCCceEEE
Q 007402 173 LQSKSFSDSLKILV 186 (605)
Q Consensus 173 ~~~~~~l~~l~~lV 186 (605)
+++.++++||
T Consensus 405 ----LDi~dV~lVI 414 (519)
T KOG0331|consen 405 ----LDVPDVDLVI 414 (519)
T ss_pred ----CCCccccEEE
Confidence 5665555544
No 345
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.33 E-value=2.1 Score=48.03 Aligned_cols=39 Identities=15% Similarity=0.348 Sum_probs=24.7
Q ss_pred CCceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEe
Q 007402 180 DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMS 219 (605)
Q Consensus 180 ~~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~S 219 (605)
...+++||||+|.|....+ +.+...++.-|....+||.+
T Consensus 118 ~~~kVvIIDEad~ls~~a~-naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSAF-NAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred CCceEEEEcCcccCCHHHH-HHHHHHHhCCCCCEEEEEEe
Confidence 4578999999998865432 23334444455566666655
No 346
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=90.27 E-value=1.4 Score=48.22 Aligned_cols=72 Identities=18% Similarity=0.238 Sum_probs=54.6
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHH----cCCCcEEEECCchHHHHHhcCCC
Q 007402 98 LAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL----AGPPDIVIATPGCMPKCLSTGVL 173 (605)
Q Consensus 98 ~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l----~~~~dIvV~TP~~l~~~l~~~~~ 173 (605)
...++||.|+|++-|..++..+... ++.+..++|+++...+...+ .+..+|+||| +.+..|
T Consensus 244 ~~~~~lVF~~s~~~~~~l~~~L~~~--------~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaT-----d~~~~G-- 308 (434)
T PRK11192 244 EVTRSIVFVRTRERVHELAGWLRKA--------GINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVAT-----DVAARG-- 308 (434)
T ss_pred CCCeEEEEeCChHHHHHHHHHHHhC--------CCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEc-----cccccC--
Confidence 3568999999999999998887653 68889999998876554433 3678999999 444455
Q ss_pred CCcccCCCceEEEE
Q 007402 174 QSKSFSDSLKILVL 187 (605)
Q Consensus 174 ~~~~~l~~l~~lVi 187 (605)
+++.++.+||.
T Consensus 309 ---iDip~v~~VI~ 319 (434)
T PRK11192 309 ---IDIDDVSHVIN 319 (434)
T ss_pred ---ccCCCCCEEEE
Confidence 67777877763
No 347
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=90.24 E-value=2.4 Score=49.19 Aligned_cols=23 Identities=22% Similarity=0.062 Sum_probs=17.3
Q ss_pred CcEEEEcCCCchHHHHHHHHHHH
Q 007402 64 KDVVARAKTGSGKTFAYLLPLLH 86 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a~~lpil~ 86 (605)
+-+.+.+|||+|||.+....+..
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~ 208 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAAR 208 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhh
Confidence 44789999999999876554443
No 348
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=90.19 E-value=0.85 Score=52.51 Aligned_cols=42 Identities=21% Similarity=0.256 Sum_probs=38.1
Q ss_pred ceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecC
Q 007402 182 LKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSS 223 (605)
Q Consensus 182 l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~ 223 (605)
.=++|||+-|++.+.....-+..++++.|.+.+.++.|-+-|
T Consensus 130 pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 130 PLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred ceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 458999999999999889999999999999999999997755
No 349
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=90.13 E-value=0.82 Score=48.08 Aligned_cols=43 Identities=19% Similarity=0.309 Sum_probs=27.4
Q ss_pred hCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHH
Q 007402 61 LEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELC 112 (605)
Q Consensus 61 l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa 112 (605)
..+++++++++||||||. ++-.++..+- ...+++.+=-+.||.
T Consensus 158 ~~~~nili~G~tgSGKTT-ll~aL~~~ip--------~~~ri~tiEd~~El~ 200 (332)
T PRK13900 158 ISKKNIIISGGTSTGKTT-FTNAALREIP--------AIERLITVEDAREIV 200 (332)
T ss_pred HcCCcEEEECCCCCCHHH-HHHHHHhhCC--------CCCeEEEecCCCccc
Confidence 356899999999999996 3333343331 234566665555653
No 350
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=90.12 E-value=0.98 Score=44.51 Aligned_cols=47 Identities=23% Similarity=0.341 Sum_probs=31.1
Q ss_pred CCceEEEEeCcchhccC-CcHHHHHHHHhhCC-CCceEEEEeeecChhH
Q 007402 180 DSLKILVLDEADLLLSY-GYEDDLKALSAVIP-RGCQCLLMSATSSSDV 226 (605)
Q Consensus 180 ~~l~~lViDEad~i~~~-g~~~~l~~i~~~lp-~~~q~il~SATl~~~v 226 (605)
...++|+||.+|.+... ...+.+..++..+. .+.|+|+.|...|.++
T Consensus 96 ~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 96 RSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp CTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred hcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 35789999999998653 23455556655543 4668887777777654
No 351
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=90.05 E-value=2.2 Score=40.83 Aligned_cols=104 Identities=16% Similarity=0.065 Sum_probs=58.4
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCH
Q 007402 64 KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPA 143 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~ 143 (605)
+=.++.+|.+||||...+-- +.+.. ..+.++++..|-.. .. .+...+.-..|.
T Consensus 5 ~l~~i~gpM~SGKT~eLl~r-~~~~~-------~~g~~v~vfkp~iD----------~R-------~~~~~V~Sr~G~-- 57 (201)
T COG1435 5 WLEFIYGPMFSGKTEELLRR-ARRYK-------EAGMKVLVFKPAID----------TR-------YGVGKVSSRIGL-- 57 (201)
T ss_pred EEEEEEccCcCcchHHHHHH-HHHHH-------HcCCeEEEEecccc----------cc-------cccceeeeccCC--
Confidence 34689999999999853332 22222 23667888888311 00 011111111121
Q ss_pred HHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCcHHHHHHHHhh
Q 007402 144 SDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 208 (605)
Q Consensus 144 ~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~~~l~~i~~~ 208 (605)
..+-++|-.+..+.+.+.... ....+++|.||||+-+. ...-..+..+...
T Consensus 58 --------~~~A~~i~~~~~i~~~i~~~~-----~~~~~~~v~IDEaQF~~-~~~v~~l~~lad~ 108 (201)
T COG1435 58 --------SSEAVVIPSDTDIFDEIAALH-----EKPPVDCVLIDEAQFFD-EELVYVLNELADR 108 (201)
T ss_pred --------cccceecCChHHHHHHHHhcc-----cCCCcCEEEEehhHhCC-HHHHHHHHHHHhh
Confidence 134677778888888887642 11227899999998643 2233445555544
No 352
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=90.04 E-value=0.46 Score=50.10 Aligned_cols=44 Identities=23% Similarity=0.243 Sum_probs=29.6
Q ss_pred HhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHH
Q 007402 60 ILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELC 112 (605)
Q Consensus 60 ~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa 112 (605)
+..++++++.++||||||.. +-.++..+ ....+++.+=.+.||.
T Consensus 159 v~~~~nilI~G~tGSGKTTl-l~aLl~~i--------~~~~rivtiEd~~El~ 202 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTM-SKTLISAI--------PPQERLITIEDTLELV 202 (344)
T ss_pred HHcCCeEEEECCCCccHHHH-HHHHHccc--------CCCCCEEEECCCcccc
Confidence 44678999999999999962 33333322 1244677777887774
No 353
>PRK11823 DNA repair protein RadA; Provisional
Probab=89.97 E-value=1.7 Score=47.73 Aligned_cols=58 Identities=22% Similarity=0.239 Sum_probs=34.4
Q ss_pred HHHHHhCC-----CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHH
Q 007402 56 SIPLILEG-----KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMAL 122 (605)
Q Consensus 56 aIp~~l~g-----kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l 122 (605)
-+..++.| .-+++.+++|+|||...+- ++..+.. .+.+++++.- .|-..|+......+
T Consensus 68 ~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq-~a~~~a~-------~g~~vlYvs~-Ees~~qi~~ra~rl 130 (446)
T PRK11823 68 ELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQ-VAARLAA-------AGGKVLYVSG-EESASQIKLRAERL 130 (446)
T ss_pred HHHHHhcCCccCCEEEEEECCCCCCHHHHHHH-HHHHHHh-------cCCeEEEEEc-cccHHHHHHHHHHc
Confidence 34455553 4678999999999974333 3333322 1456788764 45556666554443
No 354
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=89.95 E-value=1.7 Score=47.32 Aligned_cols=71 Identities=20% Similarity=0.301 Sum_probs=53.4
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHH----cCCCcEEEECCchHHHHHhcCCCC
Q 007402 99 APAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL----AGPPDIVIATPGCMPKCLSTGVLQ 174 (605)
Q Consensus 99 ~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l----~~~~dIvV~TP~~l~~~l~~~~~~ 174 (605)
..++||.|+|+.-|..+++.+... ++.+..++|+++...+...+ .+..+|+||| +.+..|
T Consensus 255 ~~~~lVF~~t~~~~~~l~~~L~~~--------g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaT-----dv~~rG--- 318 (423)
T PRK04837 255 PDRAIIFANTKHRCEEIWGHLAAD--------GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVAT-----DVAARG--- 318 (423)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhC--------CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEe-----chhhcC---
Confidence 467999999999999888877643 67888999988765544433 4678999999 455555
Q ss_pred CcccCCCceEEEE
Q 007402 175 SKSFSDSLKILVL 187 (605)
Q Consensus 175 ~~~~l~~l~~lVi 187 (605)
+++.++++||.
T Consensus 319 --iDip~v~~VI~ 329 (423)
T PRK04837 319 --LHIPAVTHVFN 329 (423)
T ss_pred --CCccccCEEEE
Confidence 67777776654
No 355
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=89.93 E-value=4.3 Score=41.95 Aligned_cols=38 Identities=29% Similarity=0.382 Sum_probs=25.3
Q ss_pred CceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEe
Q 007402 181 SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMS 219 (605)
Q Consensus 181 ~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~S 219 (605)
..++|||||+|.+... ....+..+++..+..+.+|+.+
T Consensus 102 ~~~vviiDe~~~l~~~-~~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTSD-AQQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCHH-HHHHHHHHHhcCCCCCeEEEEe
Confidence 4679999999988543 2345556666666666666654
No 356
>PHA00350 putative assembly protein
Probab=89.84 E-value=3.1 Score=44.65 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=29.5
Q ss_pred CceEEEEeCcchhccCC-----------------------cHHHHHHHHhhCCCCceEEEEeeecC
Q 007402 181 SLKILVLDEADLLLSYG-----------------------YEDDLKALSAVIPRGCQCLLMSATSS 223 (605)
Q Consensus 181 ~l~~lViDEad~i~~~g-----------------------~~~~l~~i~~~lp~~~q~il~SATl~ 223 (605)
.=.+|||||||.++... -.+.+..+..+-..+.=++|+|=.+.
T Consensus 81 ~gaLIViDEaq~~~p~r~~~~~~~~~~~p~~~~~~~~~~~p~~~i~~l~~HRH~G~DIiliTQ~~~ 146 (399)
T PHA00350 81 RGALYVIDEAQMIFPKRLGFKMANIFKRPFTDFEPHLPEGPENFLEAFMRHRHYNWDIILLTPNIR 146 (399)
T ss_pred CCCEEEEECchhhcCCCccccccccccccccccccccccCCHHHHHHHHHhcccCceEEEEeCCHH
Confidence 34689999999987532 12445555556566788899887654
No 357
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=89.80 E-value=1.7 Score=45.43 Aligned_cols=56 Identities=18% Similarity=0.207 Sum_probs=30.4
Q ss_pred eEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcC
Q 007402 183 KILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLP 243 (605)
Q Consensus 183 ~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~ 243 (605)
.+|.|||+|++.... -..++-++ .+.-++|..||-.+.--.|..-.+....++.++
T Consensus 224 TilFiDEiHRFNksQ----QD~fLP~V-E~G~I~lIGATTENPSFqln~aLlSRC~VfvLe 279 (554)
T KOG2028|consen 224 TILFIDEIHRFNKSQ----QDTFLPHV-ENGDITLIGATTENPSFQLNAALLSRCRVFVLE 279 (554)
T ss_pred eEEEeHHhhhhhhhh----hhccccee-ccCceEEEecccCCCccchhHHHHhccceeEec
Confidence 479999999964321 11111222 245678888986554444444444444444443
No 358
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.71 E-value=4.2 Score=45.62 Aligned_cols=39 Identities=18% Similarity=0.232 Sum_probs=25.4
Q ss_pred CCceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEe
Q 007402 180 DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMS 219 (605)
Q Consensus 180 ~~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~S 219 (605)
...+++||||||.|.... .+.+...++.-|....+|+.+
T Consensus 118 g~~kViIIDEa~~ls~~a-~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 118 GRYKVYLIDEVHMLSKQS-FNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred CCcEEEEEechhhccHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 456899999999976543 334445555555566666655
No 359
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=89.69 E-value=0.43 Score=52.57 Aligned_cols=34 Identities=21% Similarity=0.173 Sum_probs=26.8
Q ss_pred ccCCCceEEEEeCcchhccCCcHHHHHHHHhhCC
Q 007402 177 SFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 210 (605)
Q Consensus 177 ~~l~~l~~lViDEad~i~~~g~~~~l~~i~~~lp 210 (605)
+....-++.|+|||-..++.+.+..+-.++....
T Consensus 584 Lfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~g 617 (659)
T KOG0060|consen 584 LFYHKPKFAILDECTSAVTEDVEGALYRKCREMG 617 (659)
T ss_pred HHhcCCceEEeechhhhccHHHHHHHHHHHHHcC
Confidence 4556778999999999888887877777776653
No 360
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=89.67 E-value=1.8 Score=44.05 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=17.9
Q ss_pred HHHHHHhCC---CcEEEEcCCCchHHH
Q 007402 55 ASIPLILEG---KDVVARAKTGSGKTF 78 (605)
Q Consensus 55 ~aIp~~l~g---kdvlv~a~TGsGKT~ 78 (605)
..++.+.+. +++++.+|+|||||.
T Consensus 100 ~~l~~l~~~~~~~~~~i~g~~g~GKtt 126 (270)
T TIGR02858 100 KLLPYLVRNNRVLNTLIISPPQCGKTT 126 (270)
T ss_pred HHHHHHHhCCCeeEEEEEcCCCCCHHH
Confidence 334555443 578999999999997
No 361
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=89.57 E-value=3.8 Score=44.25 Aligned_cols=23 Identities=30% Similarity=0.130 Sum_probs=17.6
Q ss_pred cEEEEcCCCchHHHHHHHHHHHH
Q 007402 65 DVVARAKTGSGKTFAYLLPLLHR 87 (605)
Q Consensus 65 dvlv~a~TGsGKT~a~~lpil~~ 87 (605)
-+++.+|||+|||....-.+...
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999998765555443
No 362
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=89.56 E-value=2.2 Score=45.33 Aligned_cols=36 Identities=28% Similarity=0.319 Sum_probs=23.0
Q ss_pred eEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecC
Q 007402 183 KILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSS 223 (605)
Q Consensus 183 ~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~ 223 (605)
-+|+|||+|++... +=..++.++ .+..++|+.||-.
T Consensus 106 tiLflDEIHRfnK~----QQD~lLp~v-E~G~iilIGATTE 141 (436)
T COG2256 106 TILFLDEIHRFNKA----QQDALLPHV-ENGTIILIGATTE 141 (436)
T ss_pred eEEEEehhhhcChh----hhhhhhhhh-cCCeEEEEeccCC
Confidence 37999999996532 222334444 3567888888854
No 363
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=89.53 E-value=5.4 Score=41.79 Aligned_cols=149 Identities=14% Similarity=0.124 Sum_probs=63.1
Q ss_pred EEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHH-HHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHH
Q 007402 67 VARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTREL-CQQVYSEVMALIELCKGQVQLKVVQLTSSMPASD 145 (605)
Q Consensus 67 lv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreL-a~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~ 145 (605)
++.++.|+|||.+.++.++..++... ....+++. ||..- ...+......+.........+.........-
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~-----~~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 71 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRP-----PGRRVIIA-STYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDRKI--- 71 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSS-----S--EEEEE-ESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SSEE---
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCC-----CCcEEEEe-cCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCCcE---
Confidence 46789999999998888888777632 12344444 66554 4443332222222222111222221111100
Q ss_pred HHHHHcCCCcEEEECCch--HHHHHhcCCCCCcccCCCceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeec-
Q 007402 146 LRAALAGPPDIVIATPGC--MPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATS- 222 (605)
Q Consensus 146 ~~~~l~~~~dIvV~TP~~--l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl- 222 (605)
.+.++..|.+.+-+. -...+. | ..+.++++||+-.+...-+...+......... ...+++|.|.
T Consensus 72 ---~~~nG~~i~~~~~~~~~~~~~~~-G--------~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~p~~ 138 (384)
T PF03237_consen 72 ---ILPNGSRIQFRGADSPDSGDNIR-G--------FEYDLIIIDEAAKVPDDAFSELIRRLRATWGG-SIRMYISTPPN 138 (384)
T ss_dssp ---EETTS-EEEEES-----SHHHHH-T--------S--SEEEEESGGGSTTHHHHHHHHHHHHCSTT---EEEEEE---
T ss_pred ---EecCceEEEEecccccccccccc-c--------cccceeeeeecccCchHHHHHHHHhhhhcccC-cceEEeecCCC
Confidence 012344455554221 112222 1 34779999999887554444444444443332 2222444443
Q ss_pred -ChhHHHHHHHhcCCC
Q 007402 223 -SSDVDKLKKLILHNP 237 (605)
Q Consensus 223 -~~~v~~l~~~~l~~p 237 (605)
......+......+.
T Consensus 139 ~~~~~~~~~~~~~~~~ 154 (384)
T PF03237_consen 139 PGGWFYEIFQRNLDDD 154 (384)
T ss_dssp SSSHHHHHHHHHHCTS
T ss_pred CCCceeeeeehhhcCC
Confidence 333444444444443
No 364
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=89.52 E-value=3.5 Score=49.05 Aligned_cols=36 Identities=22% Similarity=0.379 Sum_probs=24.7
Q ss_pred CCCCChHHHHHHHHHHhC----C--CcEEEEcCCCchHHHHH
Q 007402 45 GIQKPTLIQQASIPLILE----G--KDVVARAKTGSGKTFAY 80 (605)
Q Consensus 45 g~~~pt~iQ~~aIp~~l~----g--kdvlv~a~TGsGKT~a~ 80 (605)
|--.|---|..-|..+++ + .++|+.+|.|+|||...
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~ 225 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVV 225 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHH
Confidence 444454446666665543 2 58999999999999743
No 365
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=89.50 E-value=8.8 Score=44.26 Aligned_cols=78 Identities=18% Similarity=0.194 Sum_probs=60.0
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHH----HHHcCCCcEEEECCchHHHHHhcCCC
Q 007402 98 LAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR----AALAGPPDIVIATPGCMPKCLSTGVL 173 (605)
Q Consensus 98 ~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~----~~l~~~~dIvV~TP~~l~~~l~~~~~ 173 (605)
.+.++||+|+|+..+..+++.+... ++.+..++++.+..... ..-.+..+|+||| +.+..|
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~--------gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t-----~~L~rG-- 505 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKEL--------GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGI-----NLLREG-- 505 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhh--------ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEc-----ChhcCC--
Confidence 4778999999999999988888765 67788888876654332 3334678999999 556666
Q ss_pred CCcccCCCceEEEEeCcchh
Q 007402 174 QSKSFSDSLKILVLDEADLL 193 (605)
Q Consensus 174 ~~~~~l~~l~~lViDEad~i 193 (605)
+.+..++++|+-++|..
T Consensus 506 ---fDiP~v~lVvi~Dadif 522 (655)
T TIGR00631 506 ---LDLPEVSLVAILDADKE 522 (655)
T ss_pred ---eeeCCCcEEEEeCcccc
Confidence 77888999999988874
No 366
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.41 E-value=2.6 Score=47.01 Aligned_cols=17 Identities=29% Similarity=0.272 Sum_probs=14.4
Q ss_pred EEEEcCCCchHHHHHHH
Q 007402 66 VVARAKTGSGKTFAYLL 82 (605)
Q Consensus 66 vlv~a~TGsGKT~a~~l 82 (605)
+|+.+|.|+|||.++..
T Consensus 39 ~Lf~GppGtGKTTlA~~ 55 (504)
T PRK14963 39 YLFSGPRGVGKTTTARL 55 (504)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 59999999999987543
No 367
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=89.39 E-value=0.89 Score=50.37 Aligned_cols=37 Identities=22% Similarity=0.296 Sum_probs=26.3
Q ss_pred HHHHCCCCCChHHHHHHHHHHhCC-C-cEEEEcCCCchHHHH
Q 007402 40 ALNKKGIQKPTLIQQASIPLILEG-K-DVVARAKTGSGKTFA 79 (605)
Q Consensus 40 al~~~g~~~pt~iQ~~aIp~~l~g-k-dvlv~a~TGsGKT~a 79 (605)
.|.++|| .+-|.+.+..++.. + -+++.+|||||||..
T Consensus 220 ~l~~Lg~---~~~~~~~l~~~~~~~~GlilitGptGSGKTTt 258 (486)
T TIGR02533 220 DLETLGM---SPELLSRFERLIRRPHGIILVTGPTGSGKTTT 258 (486)
T ss_pred CHHHcCC---CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH
Confidence 4566776 45566666665554 3 378999999999974
No 368
>PHA00729 NTP-binding motif containing protein
Probab=89.39 E-value=1.9 Score=42.64 Aligned_cols=15 Identities=47% Similarity=0.454 Sum_probs=13.6
Q ss_pred cEEEEcCCCchHHHH
Q 007402 65 DVVARAKTGSGKTFA 79 (605)
Q Consensus 65 dvlv~a~TGsGKT~a 79 (605)
++++.|++|+|||..
T Consensus 19 nIlItG~pGvGKT~L 33 (226)
T PHA00729 19 SAVIFGKQGSGKTTY 33 (226)
T ss_pred EEEEECCCCCCHHHH
Confidence 799999999999963
No 369
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.37 E-value=4.2 Score=46.18 Aligned_cols=39 Identities=18% Similarity=0.281 Sum_probs=23.9
Q ss_pred CCceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEe
Q 007402 180 DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMS 219 (605)
Q Consensus 180 ~~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~S 219 (605)
...+++||||+|.|.... .+.+...++.-|...-+|+.+
T Consensus 118 ~~~KVvIIdev~~Lt~~a-~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTNA-FNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred CCceEEEEEChhhCCHHH-HHHHHHHHHcCCCCeEEEEEe
Confidence 467899999999876432 234444444445555555544
No 370
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=89.36 E-value=1.6 Score=51.15 Aligned_cols=53 Identities=21% Similarity=0.345 Sum_probs=33.3
Q ss_pred cccCcccCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHH
Q 007402 24 EEKSFEELGLDLRLVHALNKK---GIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFA 79 (605)
Q Consensus 24 ~~~~f~~~~L~~~l~~al~~~---g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a 79 (605)
+..+|++++--....+.+.++ -+.+|..++...+ ..++.+++.+|+|+|||..
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi---~~~~giLL~GppGtGKT~l 228 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGI---EPPKGVLLYGPPGTGKTLL 228 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCC---CCCceEEEECCCCCChHHH
Confidence 457888887555555555442 3344443433222 2457899999999999974
No 371
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=89.32 E-value=0.86 Score=46.01 Aligned_cols=140 Identities=14% Similarity=0.141 Sum_probs=67.5
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEe-CCCC
Q 007402 64 KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLT-SSMP 142 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~-~~~~ 142 (605)
.=+++.|+||.|||.. ++-++..+... .+..++++..- .=..++..++-.... ++....+. +..+
T Consensus 20 ~L~vi~a~pg~GKT~~-~l~ia~~~a~~------~~~~vly~SlE-m~~~~l~~R~la~~s------~v~~~~i~~g~l~ 85 (259)
T PF03796_consen 20 ELTVIAARPGVGKTAF-ALQIALNAALN------GGYPVLYFSLE-MSEEELAARLLARLS------GVPYNKIRSGDLS 85 (259)
T ss_dssp -EEEEEESTTSSHHHH-HHHHHHHHHHT------TSSEEEEEESS-S-HHHHHHHHHHHHH------TSTHHHHHCCGCH
T ss_pred cEEEEEecccCCchHH-HHHHHHHHHHh------cCCeEEEEcCC-CCHHHHHHHHHHHhh------cchhhhhhccccC
Confidence 4578999999999965 44444444441 14668888752 112233333322221 12111111 2222
Q ss_pred HHHHH------HHHcCCCcEEEECCc----hHHHHHhcCCCCCcccCCCceEEEEeCcchhccC----CcHHHHHHHHhh
Q 007402 143 ASDLR------AALAGPPDIVIATPG----CMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSY----GYEDDLKALSAV 208 (605)
Q Consensus 143 ~~~~~------~~l~~~~dIvV~TP~----~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~----g~~~~l~~i~~~ 208 (605)
..... ..+...+-.+..+|. .+...+..-. .....+++||||=.|+|-.. +....+..+...
T Consensus 86 ~~e~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~----~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~ 161 (259)
T PF03796_consen 86 DEEFERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLK----REGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRE 161 (259)
T ss_dssp HHHHHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHH----HHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHH----hhccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHH
Confidence 22211 223344434456665 3333333211 11167899999999998764 233444444333
Q ss_pred CC-----CCceEEEEeee
Q 007402 209 IP-----RGCQCLLMSAT 221 (605)
Q Consensus 209 lp-----~~~q~il~SAT 221 (605)
+. .++.+|++|-.
T Consensus 162 Lk~lA~~~~i~vi~~sQl 179 (259)
T PF03796_consen 162 LKALAKELNIPVIALSQL 179 (259)
T ss_dssp HHHHHHHHTSEEEEEEEB
T ss_pred HHHHHHHcCCeEEEcccc
Confidence 22 14556665553
No 372
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=89.31 E-value=3.2 Score=45.88 Aligned_cols=147 Identities=12% Similarity=0.098 Sum_probs=84.3
Q ss_pred CChHHHHHHHHHHhC------C----CcEEEEcCCCchHHHHHH-HHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHH
Q 007402 48 KPTLIQQASIPLILE------G----KDVVARAKTGSGKTFAYL-LPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVY 116 (605)
Q Consensus 48 ~pt~iQ~~aIp~~l~------g----kdvlv~a~TGsGKT~a~~-lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~ 116 (605)
..-|+|.-.+-.++- | +.+++..|-+-|||.... |.....++.. ..+....|++|+.+-+.+.+
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~-----~~~~~~~i~A~s~~qa~~~F 135 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW-----RSGAGIYILAPSVEQAANSF 135 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh-----hcCCcEEEEeccHHHHHHhh
Confidence 357899999987762 1 357899999999997654 3333444442 34677999999999888888
Q ss_pred HHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCc---EEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchh
Q 007402 117 SEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPD---IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLL 193 (605)
Q Consensus 117 ~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~d---IvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i 193 (605)
..++....... ++ ........+ |...--...+..+.... +..+-.+..+.|+||.|+.
T Consensus 136 ~~ar~mv~~~~---~l--------------~~~~~~q~~s~~i~~~~~~s~ik~~aa~~--~~~Dg~~~~~~I~DEih~f 196 (546)
T COG4626 136 NPARDMVKRDD---DL--------------RDLCNVQTHSRTITHRKTDSTIKAVAADP--NTVDGLNSVGAIIDELHLF 196 (546)
T ss_pred HHHHHHHHhCc---ch--------------hhhhccccceeEEEecccceeeeeeccCC--CcccCCCcceEEEehhhhh
Confidence 87776654321 01 111111111 22211111222222221 1233345678999999997
Q ss_pred ccCCcHHHHHHHHhhCC--CCceEEEEee
Q 007402 194 LSYGYEDDLKALSAVIP--RGCQCLLMSA 220 (605)
Q Consensus 194 ~~~g~~~~l~~i~~~lp--~~~q~il~SA 220 (605)
...+ ..+..+..-+. ++.+++..|.
T Consensus 197 ~~~~--~~~~~~~~g~~ar~~~l~~~ITT 223 (546)
T COG4626 197 GKQE--DMYSEAKGGLGARPEGLVVYITT 223 (546)
T ss_pred cCHH--HHHHHHHhhhccCcCceEEEEec
Confidence 6553 44444444332 3566777665
No 373
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=89.22 E-value=0.88 Score=50.43 Aligned_cols=91 Identities=25% Similarity=0.184 Sum_probs=58.1
Q ss_pred cCCCCH-HHHHHHHHCCCCCChH-------HHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCe
Q 007402 30 ELGLDL-RLVHALNKKGIQKPTL-------IQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPA 101 (605)
Q Consensus 30 ~~~L~~-~l~~al~~~g~~~pt~-------iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~ 101 (605)
+.++.+ -|.++|.+.--.++.. -|-++|. --.++-++|++..|||||.+++--+.-.+..... .-.+..
T Consensus 186 d~~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR-~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~--~l~~k~ 262 (747)
T COG3973 186 DTGGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIR-FEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRG--PLQAKP 262 (747)
T ss_pred CCchHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHh-ccCCCeEEEecCCCCCchhHHHHHHHHHHhcccc--ccccCc
Confidence 344444 4556787765445433 3444442 2245668999999999999887666555544322 122344
Q ss_pred EEEEcCcHHHHHHHHHHHHHHH
Q 007402 102 ALVLVPTRELCQQVYSEVMALI 123 (605)
Q Consensus 102 ~LilvPtreLa~Qv~~~~~~l~ 123 (605)
+||+.|.+-+..-+..++-.+.
T Consensus 263 vlvl~PN~vFleYis~VLPeLG 284 (747)
T COG3973 263 VLVLGPNRVFLEYISRVLPELG 284 (747)
T ss_pred eEEEcCcHHHHHHHHHhchhhc
Confidence 9999999998887777766553
No 374
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=89.20 E-value=2.6 Score=41.80 Aligned_cols=51 Identities=8% Similarity=0.083 Sum_probs=30.3
Q ss_pred hCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHH
Q 007402 61 LEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVM 120 (605)
Q Consensus 61 l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~ 120 (605)
-.|.-+++.+++|+|||...+-.+. .++. ++.++++++. .+-..+..+.+.
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~-~~~~-------~g~~~~yi~~-e~~~~~~~~~~~ 72 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAY-GFLQ-------NGYSVSYVST-QLTTTEFIKQMM 72 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH-HHHh-------CCCcEEEEeC-CCCHHHHHHHHH
Confidence 3467899999999999975333333 2332 2455777773 333344444443
No 375
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=89.05 E-value=2.1 Score=47.10 Aligned_cols=70 Identities=16% Similarity=0.183 Sum_probs=52.8
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHH----cCCCcEEEECCchHHHHHhcCCCC
Q 007402 99 APAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL----AGPPDIVIATPGCMPKCLSTGVLQ 174 (605)
Q Consensus 99 ~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l----~~~~dIvV~TP~~l~~~l~~~~~~ 174 (605)
..++||.|+|++-|..+++.+... .+.+..++|+.+.......+ .+..+|+||| +.+..|
T Consensus 245 ~~~~lVF~~t~~~~~~l~~~L~~~--------g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT-----dv~~rG--- 308 (456)
T PRK10590 245 WQQVLVFTRTKHGANHLAEQLNKD--------GIRSAAIHGNKSQGARTRALADFKSGDIRVLVAT-----DIAARG--- 308 (456)
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHC--------CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEc-----cHHhcC---
Confidence 457999999999999988877643 67888899998876544333 3678999999 555565
Q ss_pred CcccCCCceEEE
Q 007402 175 SKSFSDSLKILV 186 (605)
Q Consensus 175 ~~~~l~~l~~lV 186 (605)
+++.++++||
T Consensus 309 --iDip~v~~VI 318 (456)
T PRK10590 309 --LDIEELPHVV 318 (456)
T ss_pred --CCcccCCEEE
Confidence 6777777766
No 376
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=89.05 E-value=0.3 Score=52.50 Aligned_cols=46 Identities=26% Similarity=0.296 Sum_probs=35.7
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHH
Q 007402 65 DVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVM 120 (605)
Q Consensus 65 dvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~ 120 (605)
++++.|+||||||.++++|-+-.. ...++|+=|.-|+...+....+
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~----------~~s~vv~D~Kge~~~~t~~~r~ 46 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW----------PGSVVVLDPKGENFELTSEHRR 46 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC----------CCCEEEEccchhHHHHHHHHHH
Confidence 478999999999999998866421 3458888899999876665444
No 377
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=88.95 E-value=1 Score=48.00 Aligned_cols=28 Identities=18% Similarity=0.105 Sum_probs=19.6
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHHhh
Q 007402 62 EGKDVVARAKTGSGKTFAYLLPLLHRLFN 90 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a~~lpil~~ll~ 90 (605)
.+..+++++|||||||.. +-.+++.+..
T Consensus 148 ~~GlilI~G~TGSGKTT~-l~al~~~i~~ 175 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTL-AASIYQHCGE 175 (372)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHHh
Confidence 345689999999999963 3445555543
No 378
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=88.93 E-value=2.2 Score=47.67 Aligned_cols=69 Identities=20% Similarity=0.308 Sum_probs=53.4
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHH----cCCCcEEEECCchHHHHHhcCCCC
Q 007402 99 APAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL----AGPPDIVIATPGCMPKCLSTGVLQ 174 (605)
Q Consensus 99 ~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l----~~~~dIvV~TP~~l~~~l~~~~~~ 174 (605)
..++||.|.|+..|..++..+... ++++..++|+.+.......+ .+..+|+|+| +....|
T Consensus 273 ~~~~IVF~~tk~~~~~l~~~l~~~--------g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaT-----DvaaRG--- 336 (513)
T COG0513 273 EGRVIVFVRTKRLVEELAESLRKR--------GFKVAALHGDLPQEERDRALEKFKDGELRVLVAT-----DVAARG--- 336 (513)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHC--------CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEe-----chhhcc---
Confidence 346999999999999988777654 68999999999876655443 3779999999 455555
Q ss_pred CcccCCCceEE
Q 007402 175 SKSFSDSLKIL 185 (605)
Q Consensus 175 ~~~~l~~l~~l 185 (605)
+++.++.+|
T Consensus 337 --iDi~~v~~V 345 (513)
T COG0513 337 --LDIPDVSHV 345 (513)
T ss_pred --CCcccccee
Confidence 677777766
No 379
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=88.90 E-value=1.3 Score=47.03 Aligned_cols=40 Identities=18% Similarity=0.250 Sum_probs=26.1
Q ss_pred CCceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEee
Q 007402 180 DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSA 220 (605)
Q Consensus 180 ~~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SA 220 (605)
...+++||||||.|.... .+.+-.+++.-|...-+|++|.
T Consensus 140 g~~rVviIDeAd~l~~~a-anaLLk~LEEpp~~~~fiLit~ 179 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNA-ANAILKTLEEPPARALFILISH 179 (351)
T ss_pred CCceEEEEEchhhcCHHH-HHHHHHHHhcCCCCceEEEEEC
Confidence 457899999999986443 3345555555555566666653
No 380
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=88.89 E-value=1.8 Score=47.25 Aligned_cols=70 Identities=21% Similarity=0.305 Sum_probs=53.5
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHc----CCCcEEEECCchHHHHHhcCCCC
Q 007402 99 APAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALA----GPPDIVIATPGCMPKCLSTGVLQ 174 (605)
Q Consensus 99 ~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~----~~~dIvV~TP~~l~~~l~~~~~~ 174 (605)
.+.+||.|.|+.=|.-+++.+.+. ++.+..++|+.+.+.....|. +..+|+||| +..-.|
T Consensus 517 ~ppiIIFvN~kk~~d~lAk~LeK~--------g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaT-----DvAgRG--- 580 (673)
T KOG0333|consen 517 DPPIIIFVNTKKGADALAKILEKA--------GYKVTTLHGGKSQEQRENALADFREGTGDILVAT-----DVAGRG--- 580 (673)
T ss_pred CCCEEEEEechhhHHHHHHHHhhc--------cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEe-----cccccC---
Confidence 567999999999999888888876 689999999987765544433 478999999 333344
Q ss_pred CcccCCCceEEE
Q 007402 175 SKSFSDSLKILV 186 (605)
Q Consensus 175 ~~~~l~~l~~lV 186 (605)
+++.++++||
T Consensus 581 --IDIpnVSlVi 590 (673)
T KOG0333|consen 581 --IDIPNVSLVI 590 (673)
T ss_pred --CCCCccceee
Confidence 6777777655
No 381
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=88.82 E-value=2.1 Score=47.18 Aligned_cols=72 Identities=18% Similarity=0.268 Sum_probs=54.6
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHH----cCCCcEEEECCchHHHHHhcCCCC
Q 007402 99 APAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL----AGPPDIVIATPGCMPKCLSTGVLQ 174 (605)
Q Consensus 99 ~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l----~~~~dIvV~TP~~l~~~l~~~~~~ 174 (605)
..++||.|+|++-|..+++.+... ++.+..++|+.+...+...+ .+..+|+||| +.+..|
T Consensus 242 ~~~~lVF~~t~~~~~~l~~~L~~~--------~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaT-----dv~~rG--- 305 (460)
T PRK11776 242 PESCVVFCNTKKECQEVADALNAQ--------GFSALALHGDLEQRDRDQVLVRFANRSCSVLVAT-----DVAARG--- 305 (460)
T ss_pred CCceEEEECCHHHHHHHHHHHHhC--------CCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEe-----cccccc---
Confidence 456999999999999999887654 67889999998876554433 3668999999 455555
Q ss_pred CcccCCCceEEEEe
Q 007402 175 SKSFSDSLKILVLD 188 (605)
Q Consensus 175 ~~~~l~~l~~lViD 188 (605)
+++.+++++|.-
T Consensus 306 --iDi~~v~~VI~~ 317 (460)
T PRK11776 306 --LDIKALEAVINY 317 (460)
T ss_pred --cchhcCCeEEEe
Confidence 677778877753
No 382
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=88.81 E-value=1.1 Score=50.69 Aligned_cols=45 Identities=29% Similarity=0.300 Sum_probs=29.5
Q ss_pred HHHHCCCCCChHHHHHHHHHHhCC--CcEEEEcCCCchHHHHHHHHHHHHH
Q 007402 40 ALNKKGIQKPTLIQQASIPLILEG--KDVVARAKTGSGKTFAYLLPLLHRL 88 (605)
Q Consensus 40 al~~~g~~~pt~iQ~~aIp~~l~g--kdvlv~a~TGsGKT~a~~lpil~~l 88 (605)
.|.++|| .+-|.+.+..++.. .-+|+++|||||||... ..++..+
T Consensus 294 ~l~~lg~---~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~ 340 (564)
T TIGR02538 294 DIDKLGF---EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNIL 340 (564)
T ss_pred CHHHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhh
Confidence 4567776 35566666555543 45789999999999753 3445444
No 383
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=88.79 E-value=4.1 Score=46.06 Aligned_cols=20 Identities=25% Similarity=0.217 Sum_probs=15.8
Q ss_pred CcEEEEcCCCchHHHHHHHH
Q 007402 64 KDVVARAKTGSGKTFAYLLP 83 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a~~lp 83 (605)
+-.|+.||.|+|||.++-+.
T Consensus 39 hayLf~Gp~GtGKTt~Ak~l 58 (559)
T PRK05563 39 HAYLFSGPRGTGKTSAAKIF 58 (559)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 34789999999999866543
No 384
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=88.55 E-value=2.3 Score=49.91 Aligned_cols=52 Identities=19% Similarity=0.341 Sum_probs=32.4
Q ss_pred ccCcccCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHH
Q 007402 25 EKSFEELGLDLRLVHALNKK---GIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFA 79 (605)
Q Consensus 25 ~~~f~~~~L~~~l~~al~~~---g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a 79 (605)
..+|++.+.-+.+.+.|.+. .+..|..++...+ ...+.+|+.+|+|+|||..
T Consensus 449 ~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~---~~~~giLL~GppGtGKT~l 503 (733)
T TIGR01243 449 NVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGI---RPPKGVLLFGPPGTGKTLL 503 (733)
T ss_pred ccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCC---CCCceEEEECCCCCCHHHH
Confidence 45788887777776666552 2333333222211 1235699999999999984
No 385
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=88.52 E-value=6 Score=44.40 Aligned_cols=132 Identities=17% Similarity=0.271 Sum_probs=84.4
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHH-HHhcCCcceEEEEEeCCCC
Q 007402 64 KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALI-ELCKGQVQLKVVQLTSSMP 142 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~-~~~~~~~~i~v~~l~~~~~ 142 (605)
|-.+.--|---|||. |++|++..++. +-.+.++.+++.-|.-++-|.+++..-+ ++++. . .++..-
T Consensus 203 kaTVFLVPRRHGKTW-f~VpiIsllL~-----s~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~--~-~vi~~k---- 269 (668)
T PHA03372 203 KATVFLVPRRHGKTW-FIIPIISFLLK-----NIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPR--K-HTIENK---- 269 (668)
T ss_pred cceEEEecccCCcee-hHHHHHHHHHH-----hhcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCc--c-ceeeec----
Confidence 456778899999996 78999998887 3458899999999999999888876443 33332 1 111111
Q ss_pred HHHHHHHHcCCCcEEEECCchHHHHHh-cCCCCCcccCCCceEEEEeCcchhccCCcHHHHHHHHhhCC-CCceEEEEee
Q 007402 143 ASDLRAALAGPPDIVIATPGCMPKCLS-TGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP-RGCQCLLMSA 220 (605)
Q Consensus 143 ~~~~~~~l~~~~dIvV~TP~~l~~~l~-~~~~~~~~~l~~l~~lViDEad~i~~~g~~~~l~~i~~~lp-~~~q~il~SA 220 (605)
+--|.++-|+.=...+. ...-.+..-=.++.++++||||-+- .+.+..|+..+. +++.+|+.|.
T Consensus 270 ----------~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~----~~a~~tilgfm~q~~~KiIfISS 335 (668)
T PHA03372 270 ----------DNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIK----KDAFNTILGFLAQNTTKIIFISS 335 (668)
T ss_pred ----------CcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccC----HHHHHHhhhhhcccCceEEEEeC
Confidence 11345554432111000 0000122334678899999999875 456677776554 6888999998
Q ss_pred ec
Q 007402 221 TS 222 (605)
Q Consensus 221 Tl 222 (605)
|-
T Consensus 336 ~N 337 (668)
T PHA03372 336 TN 337 (668)
T ss_pred CC
Confidence 84
No 386
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=88.51 E-value=3.4 Score=46.73 Aligned_cols=19 Identities=21% Similarity=0.204 Sum_probs=15.3
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 007402 64 KDVVARAKTGSGKTFAYLL 82 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a~~l 82 (605)
+-+|+.||.|+|||..+..
T Consensus 39 hA~Lf~GP~GvGKTTlA~~ 57 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKI 57 (605)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3589999999999986544
No 387
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=88.48 E-value=0.85 Score=53.98 Aligned_cols=56 Identities=18% Similarity=0.319 Sum_probs=38.5
Q ss_pred hhhcccCcccCCCCHHHHHHHHHCCC---CCChHHHHHHHHHHhCCCcEEEEcCCCchHHHH
Q 007402 21 EAEEEKSFEELGLDLRLVHALNKKGI---QKPTLIQQASIPLILEGKDVVARAKTGSGKTFA 79 (605)
Q Consensus 21 ~~~~~~~f~~~~L~~~l~~al~~~g~---~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a 79 (605)
......+|++.|.-..+...|+++-+ ..|.-+|.-.| .--+.+|..+|.|+|||+.
T Consensus 257 ~~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~i---tpPrgvL~~GppGTGkTl~ 315 (1080)
T KOG0732|consen 257 SVDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNI---TPPRGVLFHGPPGTGKTLM 315 (1080)
T ss_pred hhhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhccc---CCCcceeecCCCCCchhHH
Confidence 34456889999988888888888643 33333333222 1236799999999999984
No 388
>PRK10865 protein disaggregation chaperone; Provisional
Probab=88.45 E-value=3.5 Score=49.07 Aligned_cols=44 Identities=18% Similarity=0.130 Sum_probs=25.5
Q ss_pred eEEEEeCcchhccCC---cHHHHHHHHhhCCCCceEEEEeeecChhH
Q 007402 183 KILVLDEADLLLSYG---YEDDLKALSAVIPRGCQCLLMSATSSSDV 226 (605)
Q Consensus 183 ~~lViDEad~i~~~g---~~~~l~~i~~~lp~~~q~il~SATl~~~v 226 (605)
.+|+|||+|.+...| -..+...++...-....+.++.||-.++.
T Consensus 273 ~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaTt~~e~ 319 (857)
T PRK10865 273 VILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEY 319 (857)
T ss_pred eEEEEecHHHhccCCCCccchhHHHHhcchhhcCCCeEEEcCCCHHH
Confidence 489999999998543 12234444432223345566666665553
No 389
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=88.38 E-value=1.5 Score=45.03 Aligned_cols=21 Identities=24% Similarity=0.128 Sum_probs=16.2
Q ss_pred CcEEEEcCCCchHHHHHHHHH
Q 007402 64 KDVVARAKTGSGKTFAYLLPL 84 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a~~lpi 84 (605)
+.+++.+|||+|||....-.+
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa 215 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLA 215 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468899999999998654433
No 390
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=88.22 E-value=1 Score=42.78 Aligned_cols=46 Identities=15% Similarity=0.348 Sum_probs=27.3
Q ss_pred hCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHH
Q 007402 61 LEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQV 115 (605)
Q Consensus 61 l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv 115 (605)
-.++++++.|++|+|||..+.- +...+... +..+++ +++.+|...+
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~a-i~~~~~~~-------g~~v~f-~~~~~L~~~l 90 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVA-IANEAIRK-------GYSVLF-ITASDLLDEL 90 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHH-HHHHHHHT-------T--EEE-EEHHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHH-HHHHhccC-------CcceeE-eecCceeccc
Confidence 3568999999999999986433 44444442 444555 4555666543
No 391
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.16 E-value=5.8 Score=45.33 Aligned_cols=19 Identities=26% Similarity=0.169 Sum_probs=15.7
Q ss_pred cEEEEcCCCchHHHHHHHH
Q 007402 65 DVVARAKTGSGKTFAYLLP 83 (605)
Q Consensus 65 dvlv~a~TGsGKT~a~~lp 83 (605)
..|+.||.|+|||.++.+.
T Consensus 40 a~Lf~Gp~GvGKttlA~~l 58 (620)
T PRK14954 40 GYIFSGLRGVGKTTAARVF 58 (620)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 4899999999999866543
No 392
>CHL00095 clpC Clp protease ATP binding subunit
Probab=88.16 E-value=4.2 Score=48.34 Aligned_cols=17 Identities=24% Similarity=0.298 Sum_probs=15.1
Q ss_pred CcEEEEcCCCchHHHHH
Q 007402 64 KDVVARAKTGSGKTFAY 80 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a~ 80 (605)
.++++.||+|+|||...
T Consensus 201 ~n~lL~G~pGvGKTal~ 217 (821)
T CHL00095 201 NNPILIGEPGVGKTAIA 217 (821)
T ss_pred CCeEEECCCCCCHHHHH
Confidence 58999999999999854
No 393
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=88.10 E-value=13 Score=34.77 Aligned_cols=17 Identities=24% Similarity=0.216 Sum_probs=13.8
Q ss_pred EEEEcCCCchHHHHHHH
Q 007402 66 VVARAKTGSGKTFAYLL 82 (605)
Q Consensus 66 vlv~a~TGsGKT~a~~l 82 (605)
+++.+++|+|||.....
T Consensus 3 ~~~~G~~G~GKTt~~~~ 19 (173)
T cd03115 3 ILLVGLQGVGKTTTAAK 19 (173)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 57899999999986433
No 394
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=88.09 E-value=1.2 Score=43.79 Aligned_cols=46 Identities=24% Similarity=0.342 Sum_probs=32.2
Q ss_pred CCceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecChhH
Q 007402 180 DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDV 226 (605)
Q Consensus 180 ~~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~~~v 226 (605)
-..+.+|+||||.|.+ |-...++..++...+.+.+.|..-+...-+
T Consensus 112 grhKIiILDEADSMT~-gAQQAlRRtMEiyS~ttRFalaCN~s~KIi 157 (333)
T KOG0991|consen 112 GRHKIIILDEADSMTA-GAQQALRRTMEIYSNTTRFALACNQSEKII 157 (333)
T ss_pred CceeEEEeeccchhhh-HHHHHHHHHHHHHcccchhhhhhcchhhhh
Confidence 4577999999998764 456677777777777777766655544333
No 395
>PTZ00110 helicase; Provisional
Probab=88.04 E-value=3 Score=47.11 Aligned_cols=71 Identities=18% Similarity=0.178 Sum_probs=53.4
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHH----cCCCcEEEECCchHHHHHhcCCCC
Q 007402 99 APAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL----AGPPDIVIATPGCMPKCLSTGVLQ 174 (605)
Q Consensus 99 ~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l----~~~~dIvV~TP~~l~~~l~~~~~~ 174 (605)
+.++||.|+|+.-|..++..+... ++.+..++|+.+...+...+ .+...|+||| +.+..|
T Consensus 377 ~~k~LIF~~t~~~a~~l~~~L~~~--------g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaT-----dv~~rG--- 440 (545)
T PTZ00110 377 GDKILIFVETKKGADFLTKELRLD--------GWPALCIHGDKKQEERTWVLNEFKTGKSPIMIAT-----DVASRG--- 440 (545)
T ss_pred CCeEEEEecChHHHHHHHHHHHHc--------CCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEc-----chhhcC---
Confidence 668999999999999988877532 57788899988766544333 3567899999 455555
Q ss_pred CcccCCCceEEEE
Q 007402 175 SKSFSDSLKILVL 187 (605)
Q Consensus 175 ~~~~l~~l~~lVi 187 (605)
+++.++.+||.
T Consensus 441 --IDi~~v~~VI~ 451 (545)
T PTZ00110 441 --LDVKDVKYVIN 451 (545)
T ss_pred --CCcccCCEEEE
Confidence 67777887775
No 396
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=88.02 E-value=0.47 Score=52.38 Aligned_cols=49 Identities=29% Similarity=0.348 Sum_probs=37.6
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHH
Q 007402 64 KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMAL 122 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l 122 (605)
.++++.||||||||..+++|.+- .. ...+||.=|--||...+....++.
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll---~~-------~~s~iV~D~KgEl~~~t~~~r~~~ 93 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLL---NY-------PGSMIVTDPKGELYEKTAGYRKKR 93 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHH---hc-------cCCEEEEECCCcHHHHHHHHHHHC
Confidence 36999999999999999999763 21 125888889999988777655543
No 397
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=87.96 E-value=1.1 Score=45.29 Aligned_cols=67 Identities=13% Similarity=0.254 Sum_probs=41.0
Q ss_pred CCCCChHHHHHHHHHHh-------CCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHH
Q 007402 45 GIQKPTLIQQASIPLIL-------EGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYS 117 (605)
Q Consensus 45 g~~~pt~iQ~~aIp~~l-------~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~ 117 (605)
.|.-....+..++..+. +++++++.|++|+|||-.+. .+...+... +. -++++++.+|+.++..
T Consensus 80 d~~~~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~-Ai~~~l~~~-------g~-sv~f~~~~el~~~Lk~ 150 (254)
T COG1484 80 DFEFQPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAI-AIGNELLKA-------GI-SVLFITAPDLLSKLKA 150 (254)
T ss_pred cccCCcchhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHH-HHHHHHHHc-------CC-eEEEEEHHHHHHHHHH
Confidence 34444445555443332 56799999999999997543 333444431 33 4556777788877666
Q ss_pred HHH
Q 007402 118 EVM 120 (605)
Q Consensus 118 ~~~ 120 (605)
.+.
T Consensus 151 ~~~ 153 (254)
T COG1484 151 AFD 153 (254)
T ss_pred HHh
Confidence 443
No 398
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=87.77 E-value=1.2 Score=43.76 Aligned_cols=15 Identities=27% Similarity=0.293 Sum_probs=13.6
Q ss_pred cEEEEcCCCchHHHH
Q 007402 65 DVVARAKTGSGKTFA 79 (605)
Q Consensus 65 dvlv~a~TGsGKT~a 79 (605)
++|+.+|+|+|||..
T Consensus 52 h~lf~GPPG~GKTTL 66 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTL 66 (233)
T ss_dssp EEEEESSTTSSHHHH
T ss_pred eEEEECCCccchhHH
Confidence 699999999999974
No 399
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=87.69 E-value=3.6 Score=44.31 Aligned_cols=41 Identities=22% Similarity=0.288 Sum_probs=24.3
Q ss_pred CCceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeee
Q 007402 180 DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSAT 221 (605)
Q Consensus 180 ~~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SAT 221 (605)
...+++||||||.|.... .+.+-..++.-|.+.-+|+.+.+
T Consensus 116 ~~~kViiIDead~m~~~a-anaLLk~LEep~~~~~fIL~a~~ 156 (394)
T PRK07940 116 GRWRIVVIEDADRLTERA-ANALLKAVEEPPPRTVWLLCAPS 156 (394)
T ss_pred CCcEEEEEechhhcCHHH-HHHHHHHhhcCCCCCeEEEEECC
Confidence 467899999999986543 23344444444445444444444
No 400
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.40 E-value=5.4 Score=45.46 Aligned_cols=19 Identities=21% Similarity=0.218 Sum_probs=15.2
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 007402 64 KDVVARAKTGSGKTFAYLL 82 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a~~l 82 (605)
+.+|+.||.|+|||.+..+
T Consensus 39 ~a~Lf~Gp~G~GKTtlA~~ 57 (585)
T PRK14950 39 HAYLFTGPRGVGKTSTARI 57 (585)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3469999999999986544
No 401
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=87.27 E-value=4.2 Score=42.89 Aligned_cols=40 Identities=15% Similarity=0.072 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHhC--C---CcEEEEcCCCchHHHHHHHHHHHHHhh
Q 007402 50 TLIQQASIPLILE--G---KDVVARAKTGSGKTFAYLLPLLHRLFN 90 (605)
Q Consensus 50 t~iQ~~aIp~~l~--g---kdvlv~a~TGsGKT~a~~lpil~~ll~ 90 (605)
+|+|...+..+.. + +-+|+.||.|.||+..+. -+.+.++-
T Consensus 3 yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~-~~A~~LlC 47 (342)
T PRK06964 3 YPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQ-HLAQGLLC 47 (342)
T ss_pred CcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHH-HHHHHHcC
Confidence 5677777765543 3 358899999999997653 34445544
No 402
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=87.24 E-value=2.4 Score=40.29 Aligned_cols=54 Identities=20% Similarity=0.427 Sum_probs=45.2
Q ss_pred CCceEEEEeCcchhccCCcH--HHHHHHHhhCCCCceEEEEeeecChhHHHHHHHh
Q 007402 180 DSLKILVLDEADLLLSYGYE--DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLI 233 (605)
Q Consensus 180 ~~l~~lViDEad~i~~~g~~--~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~ 233 (605)
..+++||+||.-..+.|||. +++..++..-|....+|+..-..++.+-++..+.
T Consensus 121 ~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADlV 176 (198)
T COG2109 121 GKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELADLV 176 (198)
T ss_pred CCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHHH
Confidence 35899999999999999865 6788888888888888888888888887777665
No 403
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=87.20 E-value=0.62 Score=47.77 Aligned_cols=26 Identities=31% Similarity=0.483 Sum_probs=19.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhh
Q 007402 63 GKDVVARAKTGSGKTFAYLLPLLHRLFN 90 (605)
Q Consensus 63 gkdvlv~a~TGsGKT~a~~lpil~~ll~ 90 (605)
..++++.+|||||||+.+ -.+.++++
T Consensus 97 KSNILLiGPTGsGKTlLA--qTLAk~Ln 122 (408)
T COG1219 97 KSNILLIGPTGSGKTLLA--QTLAKILN 122 (408)
T ss_pred eccEEEECCCCCcHHHHH--HHHHHHhC
Confidence 357999999999999843 34455554
No 404
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=87.19 E-value=1.3 Score=47.03 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=18.7
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHH
Q 007402 62 EGKDVVARAKTGSGKTFAYLLPLLHRL 88 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a~~lpil~~l 88 (605)
.+.-+++++|||||||... -.++..+
T Consensus 133 ~~glilI~GpTGSGKTTtL-~aLl~~i 158 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLL-AAIIREL 158 (358)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHH
Confidence 4667999999999999743 3344444
No 405
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=87.16 E-value=4 Score=43.66 Aligned_cols=50 Identities=20% Similarity=0.183 Sum_probs=29.7
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q 007402 63 GKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMA 121 (605)
Q Consensus 63 gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~ 121 (605)
|.-+++.+++|+|||...+- ++..+.. .+.+++++.-. |-..|+......
T Consensus 82 GslvLI~G~pG~GKStLllq-~a~~~a~-------~g~~VlYvs~E-Es~~qi~~Ra~r 131 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQ-VAARLAK-------RGGKVLYVSGE-ESPEQIKLRADR 131 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHH-HHHHHHh-------cCCeEEEEECC-cCHHHHHHHHHH
Confidence 35688999999999974333 3333322 13467777643 444565554443
No 406
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=87.12 E-value=0.6 Score=52.98 Aligned_cols=49 Identities=20% Similarity=0.131 Sum_probs=39.8
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHH
Q 007402 64 KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMAL 122 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l 122 (605)
.++++.||||||||..+++|-+-.. +..++|+=|--|+...+....++.
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~----------~~S~VV~DpKGEl~~~Ta~~R~~~ 207 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW----------EDSVVVHDIKLENYELTSGWREKQ 207 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC----------CCCEEEEeCcHHHHHHHHHHHHHC
Confidence 4789999999999999999987542 234889999999998887766553
No 407
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=87.08 E-value=7 Score=40.96 Aligned_cols=40 Identities=20% Similarity=0.175 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHh----CCC---cEEEEcCCCchHHHHHHHHHHHHHhh
Q 007402 50 TLIQQASIPLIL----EGK---DVVARAKTGSGKTFAYLLPLLHRLFN 90 (605)
Q Consensus 50 t~iQ~~aIp~~l----~gk---dvlv~a~TGsGKT~a~~lpil~~ll~ 90 (605)
+|+|+..+..+. +|+ -.|+.||.|.||+..+.. +.+.++-
T Consensus 4 yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~-~A~~llC 50 (325)
T PRK06871 4 YPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRA-LAQWLMC 50 (325)
T ss_pred CcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHH-HHHHHcC
Confidence 566666665544 443 578999999999975433 3344443
No 408
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=87.04 E-value=0.83 Score=51.22 Aligned_cols=42 Identities=29% Similarity=0.378 Sum_probs=32.8
Q ss_pred CChHHHHHHHH----HHhCCCcEEEEcCCCchHHHHHHHHHHHHHh
Q 007402 48 KPTLIQQASIP----LILEGKDVVARAKTGSGKTFAYLLPLLHRLF 89 (605)
Q Consensus 48 ~pt~iQ~~aIp----~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll 89 (605)
+|+.||.+.+. .+-+|+--|..+|||+|||+..+-.++..|-
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~ 60 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLR 60 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHH
Confidence 68999987764 3557898999999999999986666655443
No 409
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=87.02 E-value=2.2 Score=45.52 Aligned_cols=43 Identities=19% Similarity=0.258 Sum_probs=26.3
Q ss_pred CCCceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeec
Q 007402 179 SDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATS 222 (605)
Q Consensus 179 l~~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl 222 (605)
.....++||||+|.|... ....+-++++.-|...-+|++|...
T Consensus 139 ~~~~kVviIDead~m~~~-aanaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 139 EGGWRVVIVDTADEMNAN-AANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred cCCCEEEEEechHhcCHH-HHHHHHHHHhcCCCCeEEEEEECCc
Confidence 356789999999987533 2334444555555555566555443
No 410
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=87.01 E-value=2.7 Score=46.52 Aligned_cols=61 Identities=20% Similarity=0.319 Sum_probs=56.3
Q ss_pred CCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 007402 283 QKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDT 343 (605)
Q Consensus 283 ~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~ 343 (605)
.+.+||.++++..+......|...|+.++.+++..+...+..++.....|.++++++|+..
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~ 111 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEK 111 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHH
Confidence 6789999999999998888899999999999999999999999999999999999999853
No 411
>PRK14701 reverse gyrase; Provisional
Probab=86.96 E-value=2.5 Score=53.37 Aligned_cols=61 Identities=23% Similarity=0.314 Sum_probs=53.7
Q ss_pred CCeEEEEecchhHHHHHHHHHHHc------CCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 007402 283 QKKALIFTNTIDMAFRLKLFLEKF------GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDT 343 (605)
Q Consensus 283 ~~k~IIFv~s~~~~~~L~~~L~~~------gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~ 343 (605)
..++||.++|+.-+.++...|..+ ++.++.+||+++..++..+++.+.+|.++|||+|...
T Consensus 122 g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgr 188 (1638)
T PRK14701 122 GKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQF 188 (1638)
T ss_pred CCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCch
Confidence 458999999999998888888763 4677889999999999999999999999999999864
No 412
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.74 E-value=5.3 Score=47.10 Aligned_cols=38 Identities=21% Similarity=0.272 Sum_probs=22.7
Q ss_pred CCceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEE
Q 007402 180 DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLM 218 (605)
Q Consensus 180 ~~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~ 218 (605)
...+++||||||.|.... .+.+..+++.-|..+.+|+.
T Consensus 118 gk~KViIIDEAh~LT~eA-qNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSS-FNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhccCCCeEEEEE
Confidence 357899999999985332 23333344444455555554
No 413
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=86.67 E-value=6.8 Score=43.63 Aligned_cols=23 Identities=26% Similarity=0.238 Sum_probs=17.6
Q ss_pred CCCcEEEEcCCCchHHHHHHHHH
Q 007402 62 EGKDVVARAKTGSGKTFAYLLPL 84 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a~~lpi 84 (605)
.|+-+.+.++||+|||......+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLA 371 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLA 371 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 45678899999999998654433
No 414
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=86.66 E-value=6.2 Score=39.03 Aligned_cols=51 Identities=10% Similarity=0.149 Sum_probs=29.7
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHH
Q 007402 63 GKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMAL 122 (605)
Q Consensus 63 gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l 122 (605)
|.-+++.+++|+|||....-.+...+ . .+.+++++.=. +-..++.+.+.++
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~-~-------~g~~~~y~~~e-~~~~~~~~~~~~~ 75 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGAL-K-------QGKKVYVITTE-NTSKSYLKQMESV 75 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHH-h-------CCCEEEEEEcC-CCHHHHHHHHHHC
Confidence 45688999999999975443333322 2 24556666642 3334555554443
No 415
>PRK05973 replicative DNA helicase; Provisional
Probab=86.43 E-value=1.3 Score=44.06 Aligned_cols=54 Identities=22% Similarity=0.225 Sum_probs=33.1
Q ss_pred HhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHH
Q 007402 60 ILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMAL 122 (605)
Q Consensus 60 ~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l 122 (605)
+..|.-+++.|++|+|||...+--+.+.+ . .+.+++|+.- -+=..|+.+.+..+
T Consensus 61 l~~Gsl~LIaG~PG~GKT~lalqfa~~~a-~-------~Ge~vlyfSl-Ees~~~i~~R~~s~ 114 (237)
T PRK05973 61 LKPGDLVLLGARPGHGKTLLGLELAVEAM-K-------SGRTGVFFTL-EYTEQDVRDRLRAL 114 (237)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHH-h-------cCCeEEEEEE-eCCHHHHHHHHHHc
Confidence 33456789999999999975544444333 2 1455777753 23345666666544
No 416
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=86.43 E-value=5.9 Score=41.56 Aligned_cols=39 Identities=23% Similarity=0.141 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHhC--CC---cEEEEcCCCchHHHHHHHHHHHHHh
Q 007402 50 TLIQQASIPLILE--GK---DVVARAKTGSGKTFAYLLPLLHRLF 89 (605)
Q Consensus 50 t~iQ~~aIp~~l~--gk---dvlv~a~TGsGKT~a~~lpil~~ll 89 (605)
+|+|+.++..+.. |+ -.|+.||.|+|||..+.. +.+.++
T Consensus 3 yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~-~a~~ll 46 (325)
T PRK08699 3 YPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARF-AAQALL 46 (325)
T ss_pred CCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHH-HHHHHc
Confidence 5777777776663 32 589999999999975433 334444
No 417
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=86.40 E-value=3.2 Score=47.60 Aligned_cols=71 Identities=21% Similarity=0.224 Sum_probs=54.4
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHH----HcCCCcEEEECCchHHHHHhcCCCC
Q 007402 99 APAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAA----LAGPPDIVIATPGCMPKCLSTGVLQ 174 (605)
Q Consensus 99 ~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~----l~~~~dIvV~TP~~l~~~l~~~~~~ 174 (605)
...+||.|+|+.-+.++++.+... ++.+..++|+++....... .....+||||| +.+..+
T Consensus 245 ~~~~IVF~~tk~~a~~l~~~L~~~--------g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVAT-----dv~arG--- 308 (629)
T PRK11634 245 FDAAIIFVRTKNATLEVAEALERN--------GYNSAALNGDMNQALREQTLERLKDGRLDILIAT-----DVAARG--- 308 (629)
T ss_pred CCCEEEEeccHHHHHHHHHHHHhC--------CCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEc-----chHhcC---
Confidence 356999999999999988877653 6788889999877654433 33679999999 566666
Q ss_pred CcccCCCceEEEE
Q 007402 175 SKSFSDSLKILVL 187 (605)
Q Consensus 175 ~~~~l~~l~~lVi 187 (605)
+++.++.+||.
T Consensus 309 --IDip~V~~VI~ 319 (629)
T PRK11634 309 --LDVERISLVVN 319 (629)
T ss_pred --CCcccCCEEEE
Confidence 77788888775
No 418
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=86.39 E-value=3.9 Score=44.86 Aligned_cols=68 Identities=21% Similarity=0.179 Sum_probs=37.6
Q ss_pred cCCCCHHHHHHHHHCCCCCChH----HHHHHHHHHhCC--------CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCC
Q 007402 30 ELGLDLRLVHALNKKGIQKPTL----IQQASIPLILEG--------KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSK 97 (605)
Q Consensus 30 ~~~L~~~l~~al~~~g~~~pt~----iQ~~aIp~~l~g--------kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~ 97 (605)
.||.++.-+......|.-.-.+ +=...--++.+- -.+|+.+|.|||||+.+.-.++ ..
T Consensus 493 AFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~----------~S 562 (744)
T KOG0741|consen 493 AFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIAL----------SS 562 (744)
T ss_pred ccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHh----------hc
Confidence 4677777776666554433222 222222222211 3599999999999974433222 13
Q ss_pred CCCeEEEEcC
Q 007402 98 LAPAALVLVP 107 (605)
Q Consensus 98 ~~~~~LilvP 107 (605)
.-|.+=|+.|
T Consensus 563 ~FPFvKiiSp 572 (744)
T KOG0741|consen 563 DFPFVKIISP 572 (744)
T ss_pred CCCeEEEeCh
Confidence 3566666666
No 419
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.38 E-value=7.1 Score=44.44 Aligned_cols=19 Identities=21% Similarity=0.139 Sum_probs=15.7
Q ss_pred cEEEEcCCCchHHHHHHHH
Q 007402 65 DVVARAKTGSGKTFAYLLP 83 (605)
Q Consensus 65 dvlv~a~TGsGKT~a~~lp 83 (605)
.+|+.+|.|+|||.++.+.
T Consensus 40 a~Lf~GPpG~GKTtiAril 58 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARIF 58 (624)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 5889999999999876543
No 420
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.31 E-value=7.3 Score=42.04 Aligned_cols=19 Identities=26% Similarity=0.169 Sum_probs=15.6
Q ss_pred cEEEEcCCCchHHHHHHHH
Q 007402 65 DVVARAKTGSGKTFAYLLP 83 (605)
Q Consensus 65 dvlv~a~TGsGKT~a~~lp 83 (605)
.+|+.||.|+|||.++.+.
T Consensus 40 a~lf~Gp~G~GKtt~A~~~ 58 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARVF 58 (397)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 4889999999999876543
No 421
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=86.22 E-value=3.3 Score=39.44 Aligned_cols=25 Identities=24% Similarity=0.301 Sum_probs=17.6
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhh
Q 007402 65 DVVARAKTGSGKTFAYLLPLLHRLFN 90 (605)
Q Consensus 65 dvlv~a~TGsGKT~a~~lpil~~ll~ 90 (605)
.+|+.+|+|+|||... ..+...++.
T Consensus 16 ~~L~~G~~G~gkt~~a-~~~~~~l~~ 40 (188)
T TIGR00678 16 AYLFAGPEGVGKELLA-LALAKALLC 40 (188)
T ss_pred EEEEECCCCCCHHHHH-HHHHHHHcC
Confidence 4899999999999754 334444443
No 422
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=86.15 E-value=5.1 Score=43.64 Aligned_cols=22 Identities=23% Similarity=0.070 Sum_probs=16.9
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q 007402 65 DVVARAKTGSGKTFAYLLPLLH 86 (605)
Q Consensus 65 dvlv~a~TGsGKT~a~~lpil~ 86 (605)
-+++++++|+|||....-.+..
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999876554443
No 423
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.12 E-value=11 Score=41.54 Aligned_cols=18 Identities=22% Similarity=0.283 Sum_probs=14.7
Q ss_pred cEEEEcCCCchHHHHHHH
Q 007402 65 DVVARAKTGSGKTFAYLL 82 (605)
Q Consensus 65 dvlv~a~TGsGKT~a~~l 82 (605)
.+|+.||+|+|||..+.+
T Consensus 38 ~~Lf~GPpGtGKTTlA~~ 55 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARI 55 (472)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 369999999999986544
No 424
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=86.09 E-value=3.4 Score=45.67 Aligned_cols=72 Identities=14% Similarity=0.236 Sum_probs=53.9
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHH----cCCCcEEEECCchHHHHHhcCCCC
Q 007402 99 APAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL----AGPPDIVIATPGCMPKCLSTGVLQ 174 (605)
Q Consensus 99 ~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l----~~~~dIvV~TP~~l~~~l~~~~~~ 174 (605)
..++||.|++++-|..+++.+... ++.+..++|+.+...+...+ .+...||||| +.+..|
T Consensus 335 ~~~~IVF~~s~~~~~~l~~~L~~~--------~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT-----~~l~~G--- 398 (475)
T PRK01297 335 WERVMVFANRKDEVRRIEERLVKD--------GINAAQLSGDVPQHKRIKTLEGFREGKIRVLVAT-----DVAGRG--- 398 (475)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc--------CCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEc-----cccccC---
Confidence 457999999999998888777543 57788888988876554333 3678999999 455555
Q ss_pred CcccCCCceEEEEe
Q 007402 175 SKSFSDSLKILVLD 188 (605)
Q Consensus 175 ~~~~l~~l~~lViD 188 (605)
+++.+++++|.-
T Consensus 399 --IDi~~v~~VI~~ 410 (475)
T PRK01297 399 --IHIDGISHVINF 410 (475)
T ss_pred --CcccCCCEEEEe
Confidence 777888888764
No 425
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=86.00 E-value=3.1 Score=41.30 Aligned_cols=46 Identities=20% Similarity=0.145 Sum_probs=28.1
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEc---CcHHHHHH
Q 007402 62 EGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLV---PTRELCQQ 114 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~Lilv---PtreLa~Q 114 (605)
.|.-+++.|++|+|||...+--+.+.+.. .+..++++. |..++...
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~-------~g~~vly~s~E~~~~~~~~r 60 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKK-------QGKPVLFFSLEMSKEQLLQR 60 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh-------CCCceEEEeCCCCHHHHHHH
Confidence 45678999999999996443333333322 145578877 34444443
No 426
>PRK08006 replicative DNA helicase; Provisional
Probab=85.94 E-value=4.8 Score=44.46 Aligned_cols=48 Identities=15% Similarity=0.156 Sum_probs=27.1
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHH
Q 007402 64 KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEV 119 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~ 119 (605)
.=+++.|+||.|||. |++-++..+... .+..++|+..- .=..|+..++
T Consensus 225 ~LiiIaarPgmGKTa-falnia~~~a~~------~g~~V~~fSlE-M~~~ql~~Rl 272 (471)
T PRK08006 225 DLIIVAARPSMGKTT-FAMNLCENAAML------QDKPVLIFSLE-MPGEQIMMRM 272 (471)
T ss_pred cEEEEEeCCCCCHHH-HHHHHHHHHHHh------cCCeEEEEecc-CCHHHHHHHH
Confidence 447889999999995 445444444321 14456666532 2234444443
No 427
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=85.86 E-value=1.4 Score=44.00 Aligned_cols=51 Identities=18% Similarity=0.135 Sum_probs=34.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHH
Q 007402 63 GKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMAL 122 (605)
Q Consensus 63 gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l 122 (605)
|.-+++.|++|+|||...+-.+.+.+.. +..++++. +.|-..|+.+.+..+
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~--------ge~~lyvs-~ee~~~~i~~~~~~~ 71 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQM--------GEPGIYVA-LEEHPVQVRRNMAQF 71 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHc--------CCcEEEEE-eeCCHHHHHHHHHHh
Confidence 4679999999999998554444444322 55677777 455666666666543
No 428
>PRK08760 replicative DNA helicase; Provisional
Probab=85.71 E-value=2.3 Score=47.11 Aligned_cols=50 Identities=14% Similarity=0.131 Sum_probs=28.3
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q 007402 64 KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMA 121 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~ 121 (605)
.=+++.|+||.|||. |++-++..+... .+..++|+.. -.=..|+...+..
T Consensus 230 ~LivIaarPg~GKTa-fal~iA~~~a~~------~g~~V~~fSl-EMs~~ql~~Rl~a 279 (476)
T PRK08760 230 DLIILAARPAMGKTT-FALNIAEYAAIK------SKKGVAVFSM-EMSASQLAMRLIS 279 (476)
T ss_pred ceEEEEeCCCCChhH-HHHHHHHHHHHh------cCCceEEEec-cCCHHHHHHHHHH
Confidence 447889999999996 445455444321 1334666643 2223455555433
No 429
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=85.55 E-value=3.4 Score=48.77 Aligned_cols=17 Identities=29% Similarity=0.290 Sum_probs=14.5
Q ss_pred CCcEEEEcCCCchHHHH
Q 007402 63 GKDVVARAKTGSGKTFA 79 (605)
Q Consensus 63 gkdvlv~a~TGsGKT~a 79 (605)
|..+++.+|+|+|||..
T Consensus 347 ~~~lll~GppG~GKT~l 363 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSL 363 (775)
T ss_pred CceEEEECCCCCCHHHH
Confidence 45699999999999974
No 430
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=85.50 E-value=6.2 Score=43.02 Aligned_cols=56 Identities=16% Similarity=0.172 Sum_probs=43.0
Q ss_pred CCe-EEEEecchhHHHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 007402 283 QKK-ALIFTNTIDMAFRLKLFLEKF----GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 342 (605)
Q Consensus 283 ~~k-~IIFv~s~~~~~~L~~~L~~~----gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~ 342 (605)
.++ .+|.|+|++.|..+....+.| |++++.+|++.+.-+...-++ -...++|||+.
T Consensus 295 ~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk----~g~EivVaTPg 355 (731)
T KOG0339|consen 295 EGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK----EGAEIVVATPG 355 (731)
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh----cCCeEEEechH
Confidence 344 577899999998887766665 789999999999876654443 34689999985
No 431
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=85.46 E-value=7.1 Score=40.81 Aligned_cols=19 Identities=21% Similarity=0.093 Sum_probs=14.9
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 007402 64 KDVVARAKTGSGKTFAYLL 82 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a~~l 82 (605)
+-+++.+|+|+|||....-
T Consensus 115 ~vi~lvGpnGsGKTTt~~k 133 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIGK 133 (318)
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 4577999999999985433
No 432
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=85.44 E-value=1.2 Score=42.50 Aligned_cols=37 Identities=32% Similarity=0.363 Sum_probs=27.5
Q ss_pred HHHCCCCCChHHHHHHHHHHh-CCCcEEEEcCCCchHHHH
Q 007402 41 LNKKGIQKPTLIQQASIPLIL-EGKDVVARAKTGSGKTFA 79 (605)
Q Consensus 41 l~~~g~~~pt~iQ~~aIp~~l-~gkdvlv~a~TGsGKT~a 79 (605)
|-+.|+ .++-|...+...+ .|+.+++.++||||||..
T Consensus 4 l~~~g~--~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 4 LIAQGT--FSPLQAAYLWLAVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred HHHcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 445555 5666777776655 468899999999999974
No 433
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=85.44 E-value=6 Score=41.26 Aligned_cols=41 Identities=12% Similarity=0.188 Sum_probs=25.6
Q ss_pred CCCceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeee
Q 007402 179 SDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSAT 221 (605)
Q Consensus 179 l~~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SAT 221 (605)
....+++|||+||.|.... .+.+-++++.-| ..-+||+|..
T Consensus 122 ~~~~kVvII~~ae~m~~~a-aNaLLK~LEEPp-~~~fILi~~~ 162 (314)
T PRK07399 122 EAPRKVVVIEDAETMNEAA-ANALLKTLEEPG-NGTLILIAPS 162 (314)
T ss_pred cCCceEEEEEchhhcCHHH-HHHHHHHHhCCC-CCeEEEEECC
Confidence 3568899999999986443 333444445445 5655655543
No 434
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=85.42 E-value=0.95 Score=47.21 Aligned_cols=60 Identities=25% Similarity=0.456 Sum_probs=44.5
Q ss_pred HhhhhhhcccCcccCC-CCHHHH--HHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHH
Q 007402 17 EEEAEAEEEKSFEELG-LDLRLV--HALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFA 79 (605)
Q Consensus 17 ~~~~~~~~~~~f~~~~-L~~~l~--~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a 79 (605)
..+.+..+..+|++.| |+.+|. +..-++-..+|-.++.-.|. -=|.||+.+|+|+|||+.
T Consensus 139 ~M~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~---PPKGVLLYGPPGTGKTLL 201 (406)
T COG1222 139 VMEVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGID---PPKGVLLYGPPGTGKTLL 201 (406)
T ss_pred eeeeccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCC---CCCceEeeCCCCCcHHHH
Confidence 4445566778899986 888774 34445788888888776662 127899999999999984
No 435
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=85.39 E-value=2.6 Score=46.19 Aligned_cols=113 Identities=19% Similarity=0.341 Sum_probs=64.3
Q ss_pred hhhhhcccCcccCC---CCHHH----HHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhc
Q 007402 19 EAEAEEEKSFEELG---LDLRL----VHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNE 91 (605)
Q Consensus 19 ~~~~~~~~~f~~~~---L~~~l----~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~ 91 (605)
..-..+...|++|| ||... .+|.+..-| .|.-+-+-.|+++ |.+|+-+|+|+|||+.+ --+-.+++.
T Consensus 209 n~ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvF-pp~vie~lGi~HV---KGiLLyGPPGTGKTLiA--RqIGkMLNA 282 (744)
T KOG0741|consen 209 NSIINPDFNFESMGIGGLDKEFSDIFRRAFASRVF-PPEVIEQLGIKHV---KGILLYGPPGTGKTLIA--RQIGKMLNA 282 (744)
T ss_pred ccccCCCCChhhcccccchHHHHHHHHHHHHhhcC-CHHHHHHcCccce---eeEEEECCCCCChhHHH--HHHHHHhcC
Confidence 34556788999996 77664 345554444 3444444444433 67999999999999853 233445555
Q ss_pred CCCCCCCCCeEE--EEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEE
Q 007402 92 SSPKSKLAPAAL--VLVPTRELCQQVYSEVMALIELCKGQVQLKVVQL 137 (605)
Q Consensus 92 ~~~~~~~~~~~L--ilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l 137 (605)
+..+--+||.+| ++--+.+=+...+...+.-...++...++.+..+
T Consensus 283 rePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIF 330 (744)
T KOG0741|consen 283 REPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIF 330 (744)
T ss_pred CCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEe
Confidence 544433344333 3334444444444444444455555555555543
No 436
>PRK08840 replicative DNA helicase; Provisional
Probab=85.08 E-value=3.2 Score=45.78 Aligned_cols=67 Identities=12% Similarity=0.082 Sum_probs=34.1
Q ss_pred CCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHH
Q 007402 45 GIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEV 119 (605)
Q Consensus 45 g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~ 119 (605)
|+.+..+---..+.-+..|.=+++.|+||.|||.- ++-+...+.. ..+..++|+..- .=..|+..++
T Consensus 199 gi~TG~~~LD~~~~G~~~g~LiviaarPg~GKTaf-alnia~~~a~------~~~~~v~~fSlE-Ms~~ql~~Rl 265 (464)
T PRK08840 199 GVDTGFTDLNKKTAGLQGSDLIIVAARPSMGKTTF-AMNLCENAAM------DQDKPVLIFSLE-MPAEQLMMRM 265 (464)
T ss_pred CcCCCcHHHHHhhcCCCCCceEEEEeCCCCchHHH-HHHHHHHHHH------hCCCeEEEEecc-CCHHHHHHHH
Confidence 44333333333333233345578899999999964 4444444432 114456666532 2234444443
No 437
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=84.71 E-value=7.4 Score=39.33 Aligned_cols=37 Identities=8% Similarity=0.001 Sum_probs=24.8
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEc
Q 007402 62 EGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLV 106 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~Lilv 106 (605)
.|.-+++.+++|+|||...+-.+.+.+. .+.+++++.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~--------~Ge~vlyis 71 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQAS--------RGNPVLFVT 71 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh--------CCCcEEEEE
Confidence 3467899999999999755443443322 245677776
No 438
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=84.67 E-value=10 Score=43.43 Aligned_cols=72 Identities=10% Similarity=0.140 Sum_probs=55.2
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHH----cCCCcEEEECCchHHHHHhcCCCC
Q 007402 99 APAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL----AGPPDIVIATPGCMPKCLSTGVLQ 174 (605)
Q Consensus 99 ~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l----~~~~dIvV~TP~~l~~~l~~~~~~ 174 (605)
+..+||.|+|+.-|.+++..+... ++.+..++++.+.......+ .+..+|+|+| +.+..|
T Consensus 236 ~~~~IIFc~tr~~~e~la~~L~~~--------g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT-----~a~~~G--- 299 (607)
T PRK11057 236 GKSGIIYCNSRAKVEDTAARLQSR--------GISAAAYHAGLDNDVRADVQEAFQRDDLQIVVAT-----VAFGMG--- 299 (607)
T ss_pred CCCEEEEECcHHHHHHHHHHHHhC--------CCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEe-----chhhcc---
Confidence 567899999999999999888754 67888999998876544333 4678999999 344445
Q ss_pred CcccCCCceEEEEe
Q 007402 175 SKSFSDSLKILVLD 188 (605)
Q Consensus 175 ~~~~l~~l~~lViD 188 (605)
+++.++++||.-
T Consensus 300 --IDip~V~~VI~~ 311 (607)
T PRK11057 300 --INKPNVRFVVHF 311 (607)
T ss_pred --CCCCCcCEEEEe
Confidence 778889888743
No 439
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=84.61 E-value=13 Score=39.50 Aligned_cols=46 Identities=22% Similarity=0.248 Sum_probs=28.9
Q ss_pred CCceEEEEeCcchhccCCcHHHHHHHHhh-CCCCceEEEEeeecChhH
Q 007402 180 DSLKILVLDEADLLLSYGYEDDLKALSAV-IPRGCQCLLMSATSSSDV 226 (605)
Q Consensus 180 ~~l~~lViDEad~i~~~g~~~~l~~i~~~-lp~~~q~il~SATl~~~v 226 (605)
....+|++||.|. .+-+-.-.+..+++. +..+.-++..|-+.|+++
T Consensus 126 ~~~~lLcfDEF~V-~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 126 KESRLLCFDEFQV-TDIADAMILKRLFEALFKRGVVLVATSNRPPEDL 172 (362)
T ss_pred hcCCEEEEeeeec-cchhHHHHHHHHHHHHHHCCCEEEecCCCChHHH
Confidence 3456899999985 233323345555543 345777888888877664
No 440
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=84.60 E-value=9.9 Score=42.57 Aligned_cols=39 Identities=21% Similarity=0.276 Sum_probs=25.8
Q ss_pred CCceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEe
Q 007402 180 DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMS 219 (605)
Q Consensus 180 ~~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~S 219 (605)
...+++||||||.|.... .+.+...++.-|..+.+|+.+
T Consensus 116 ~~~KVvIIDEad~Lt~~A-~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEA-FNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred CCeEEEEEECcccCCHHH-HHHHHHHHhhcCCceEEEEEE
Confidence 467899999999986433 233444445556677766655
No 441
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=84.52 E-value=0.79 Score=52.02 Aligned_cols=154 Identities=14% Similarity=0.140 Sum_probs=86.2
Q ss_pred CChHHHHHHHHHHhCCC----------cEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHH
Q 007402 48 KPTLIQQASIPLILEGK----------DVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYS 117 (605)
Q Consensus 48 ~pt~iQ~~aIp~~l~gk----------dvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~ 117 (605)
++...|-+||-.+.+.. ..|+-...|.||-....--|++..|+. ..++|++.-+..|--..-+
T Consensus 264 ~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkG-------RKrAlW~SVSsDLKfDAER 336 (1300)
T KOG1513|consen 264 HLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKG-------RKRALWFSVSSDLKFDAER 336 (1300)
T ss_pred chhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcc-------cceeEEEEeccccccchhh
Confidence 45678888887776543 255555556665444334456777763 4579999988888766555
Q ss_pred HHHHHHHHhcCCcceEEEEEe--------CCCCHHHHHHHHcCCCcEEEECCchHHHHHhc--CCCCCc-------ccCC
Q 007402 118 EVMALIELCKGQVQLKVVQLT--------SSMPASDLRAALAGPPDIVIATPGCMPKCLST--GVLQSK-------SFSD 180 (605)
Q Consensus 118 ~~~~l~~~~~~~~~i~v~~l~--------~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~--~~~~~~-------~~l~ 180 (605)
.+..+... .|.|..++ +..+.. -+-.|+++|+..|..--.. +..... .--+
T Consensus 337 DL~DigA~-----~I~V~alnK~KYakIss~en~n-------~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~ 404 (1300)
T KOG1513|consen 337 DLRDIGAT-----GIAVHALNKFKYAKISSKENTN-------TKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGED 404 (1300)
T ss_pred chhhcCCC-----CccceehhhcccccccccccCC-------ccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhc
Confidence 55544321 34444432 211111 1236889998655432110 000000 0001
Q ss_pred CceEEEEeCcchhccC---------CcHHHHHHHHhhCCCCceEEEEeee
Q 007402 181 SLKILVLDEADLLLSY---------GYEDDLKALSAVIPRGCQCLLMSAT 221 (605)
Q Consensus 181 ~l~~lViDEad~i~~~---------g~~~~l~~i~~~lp~~~q~il~SAT 221 (605)
-=.+||+||||..-+. .-...+-.+...+| +..++..|||
T Consensus 405 feGvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP-~ARVVYASAT 453 (1300)
T KOG1513|consen 405 FEGVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLP-NARVVYASAT 453 (1300)
T ss_pred cceeEEehhhhhhcccccccCCCcCcccHhHHHHHHhCC-CceEEEeecc
Confidence 1248999999975431 13455666777777 4678888888
No 442
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.51 E-value=11 Score=43.12 Aligned_cols=42 Identities=17% Similarity=0.173 Sum_probs=24.6
Q ss_pred cCCCceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeee
Q 007402 178 FSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSAT 221 (605)
Q Consensus 178 ~l~~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SAT 221 (605)
.....+++||||||.|.... .+.+...++..|...-+| +.+|
T Consensus 118 ~~~~~KVvIIdea~~Ls~~a-~naLLK~LEepp~~tifI-L~tt 159 (614)
T PRK14971 118 QIGKYKIYIIDEVHMLSQAA-FNAFLKTLEEPPSYAIFI-LATT 159 (614)
T ss_pred ccCCcEEEEEECcccCCHHH-HHHHHHHHhCCCCCeEEE-EEeC
Confidence 34567899999999986432 233444444444444444 4444
No 443
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=84.46 E-value=14 Score=41.97 Aligned_cols=107 Identities=21% Similarity=0.242 Sum_probs=69.2
Q ss_pred CCCeEEEEecchhHHHHHHHHHHHcCCc-------EEEEcCCCCHHHHHHHHHHH----HcCCCcEEEEcCCCCcccccc
Q 007402 282 VQKKALIFTNTIDMAFRLKLFLEKFGIK-------SAILNAELPQNSRLHILEEF----NAGLFDYLIATDDTQTKEKDQ 350 (605)
Q Consensus 282 ~~~k~IIFv~s~~~~~~L~~~L~~~gi~-------~~~l~~~l~~~~R~~i~~~F----~~g~~~iLIaTd~~~~~~~~~ 350 (605)
+++-+++|++|-+--..+...+++.|+- .+..-+.-+ -..+++.| ..|.-.+|+|.=..-
T Consensus 628 VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGK------ 698 (821)
T KOG1133|consen 628 VPGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGK------ 698 (821)
T ss_pred CCCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEeccc------
Confidence 4688999999999888888888887753 222222222 23455555 345656777763221
Q ss_pred cCCCCCcccccccCCCCCccccccccccccccCC--ccEEEEeCCCCC--------------------------------
Q 007402 351 SDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN--VHTVINFEMPQN-------------------------------- 396 (605)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~--v~~VI~fd~P~s-------------------------------- 396 (605)
+++||||.+ .++||-.++|-.
T Consensus 699 -------------------------lSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlC 753 (821)
T KOG1133|consen 699 -------------------------LSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLC 753 (821)
T ss_pred -------------------------cccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHH
Confidence 678999975 577998888732
Q ss_pred chhHHHhhcccccCCCCccEEEEeCC
Q 007402 397 AAGYVHRIGRTGRAYNTGASVSLVSP 422 (605)
Q Consensus 397 ~~~yiqRiGRtgR~g~~G~ai~~v~~ 422 (605)
..+.-|-|||+-|.-+.=.+|.++..
T Consensus 754 MkAVNQsIGRAIRH~~DYA~i~LlD~ 779 (821)
T KOG1133|consen 754 MKAVNQSIGRAIRHRKDYASIYLLDK 779 (821)
T ss_pred HHHHHHHHHHHHhhhccceeEEEehh
Confidence 01223777888887665555666643
No 444
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=84.43 E-value=2.2 Score=45.09 Aligned_cols=73 Identities=18% Similarity=0.084 Sum_probs=43.9
Q ss_pred cccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHh-CCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEc
Q 007402 28 FEELGLDLRLVHALNKKGIQKPTLIQQASIPLIL-EGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLV 106 (605)
Q Consensus 28 f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l-~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~Lilv 106 (605)
+.-+.....-+..|.+.|+ .++.+...+..+. .++++++.++||||||... -.++..+ . ...+.+++-
T Consensus 144 IR~~~~~~~tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll-~al~~~i-~-------~~~riv~iE 212 (340)
T TIGR03819 144 LRVPRPRTFTLDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTLL-SALLALV-A-------PDERIVLVE 212 (340)
T ss_pred EEeeCCccCCHHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHH-HHHHccC-C-------CCCcEEEEC
Confidence 3333333334566677776 4456666665544 4579999999999999732 2222221 1 234567776
Q ss_pred CcHHH
Q 007402 107 PTREL 111 (605)
Q Consensus 107 PtreL 111 (605)
.+.||
T Consensus 213 d~~El 217 (340)
T TIGR03819 213 DAAEL 217 (340)
T ss_pred Cccee
Confidence 77676
No 445
>CHL00176 ftsH cell division protein; Validated
Probab=84.31 E-value=2.7 Score=48.23 Aligned_cols=54 Identities=17% Similarity=0.200 Sum_probs=28.9
Q ss_pred hcccCcccCCCCHHHHHHHHHC--CCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHH
Q 007402 23 EEEKSFEELGLDLRLVHALNKK--GIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFA 79 (605)
Q Consensus 23 ~~~~~f~~~~L~~~l~~al~~~--g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a 79 (605)
+...+|++..--+...+.+.+. -+..|..++.... ..-+.+|+.+|+|+|||..
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~---~~p~gVLL~GPpGTGKT~L 232 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGA---KIPKGVLLVGPPGTGKTLL 232 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHHHHHHhCHHHHhhccC---CCCceEEEECCCCCCHHHH
Confidence 3456777775333443444432 1222222222111 1135799999999999984
No 446
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.24 E-value=1.3 Score=50.37 Aligned_cols=146 Identities=18% Similarity=0.214 Sum_probs=78.2
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEE-EcCcHHHHHHHHHHHHHHHHHhcCCc---------c
Q 007402 62 EGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALV-LVPTRELCQQVYSEVMALIELCKGQV---------Q 131 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~Li-lvPtreLa~Qv~~~~~~l~~~~~~~~---------~ 131 (605)
-|+-+-+.+|.|+|||.+ ..++++++.- ...++++ =+|-+++=.++.+ +.....+... +
T Consensus 493 pGe~vALVGPSGsGKSTi--asLL~rfY~P------tsG~IllDG~~i~~~~~~~lr---~~Ig~V~QEPvLFs~sI~eN 561 (716)
T KOG0058|consen 493 PGEVVALVGPSGSGKSTI--ASLLLRFYDP------TSGRILLDGVPISDINHKYLR---RKIGLVGQEPVLFSGSIREN 561 (716)
T ss_pred CCCEEEEECCCCCCHHHH--HHHHHHhcCC------CCCeEEECCeehhhcCHHHHH---HHeeeeeccceeecccHHHH
Confidence 578899999999999984 5566777651 1222222 2455555443333 2222221100 0
Q ss_pred eEEEEEeCCCCH------------HHHHHHHcCCCcEEEECCchHHHHHhcCCC-CCcccCCCceEEEEeCcchhccCCc
Q 007402 132 LKVVQLTSSMPA------------SDLRAALAGPPDIVIATPGCMPKCLSTGVL-QSKSFSDSLKILVLDEADLLLSYGY 198 (605)
Q Consensus 132 i~v~~l~~~~~~------------~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~-~~~~~l~~l~~lViDEad~i~~~g~ 198 (605)
|..... +.+. ++....+.++++-.|+.-+..+.--....+ -....+.+-.+||+|||---++...
T Consensus 562 I~YG~~--~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeS 639 (716)
T KOG0058|consen 562 IAYGLD--NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAES 639 (716)
T ss_pred HhcCCC--CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhh
Confidence 111100 1111 112233345566666665432211100000 0013456778999999999999888
Q ss_pred HHHHHHHHhhCCCCceEEEEeee
Q 007402 199 EDDLKALSAVIPRGCQCLLMSAT 221 (605)
Q Consensus 199 ~~~l~~i~~~lp~~~q~il~SAT 221 (605)
+..++..+..+..+ ++++.=|-
T Consensus 640 E~lVq~aL~~~~~~-rTVlvIAH 661 (716)
T KOG0058|consen 640 EYLVQEALDRLMQG-RTVLVIAH 661 (716)
T ss_pred HHHHHHHHHHhhcC-CeEEEEeh
Confidence 88899998877766 56666554
No 447
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=84.09 E-value=4.6 Score=46.08 Aligned_cols=61 Identities=16% Similarity=0.217 Sum_probs=56.0
Q ss_pred CCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 007402 283 QKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDT 343 (605)
Q Consensus 283 ~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~ 343 (605)
.+.+||.++++.-+......|...|+.+..+||.++..++..++.....|.+++|++|...
T Consensus 53 ~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~ 113 (591)
T TIGR01389 53 KGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPER 113 (591)
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhH
Confidence 6789999999999888888889999999999999999999999999999999999999764
No 448
>PRK10867 signal recognition particle protein; Provisional
Probab=83.94 E-value=27 Score=38.17 Aligned_cols=21 Identities=19% Similarity=0.028 Sum_probs=16.1
Q ss_pred cEEEEcCCCchHHHHHHHHHH
Q 007402 65 DVVARAKTGSGKTFAYLLPLL 85 (605)
Q Consensus 65 dvlv~a~TGsGKT~a~~lpil 85 (605)
-+++++++|+|||....-.+.
T Consensus 102 vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 378999999999986554443
No 449
>PRK04841 transcriptional regulator MalT; Provisional
Probab=83.86 E-value=7.7 Score=46.45 Aligned_cols=41 Identities=15% Similarity=0.233 Sum_probs=34.4
Q ss_pred eEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecC
Q 007402 183 KILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSS 223 (605)
Q Consensus 183 ~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~ 223 (605)
-+||||++|.+-+....+.+..++...|.+..+++.|-+.+
T Consensus 123 ~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 123 LYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred EEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 47999999998666566788899999999999999887754
No 450
>PTZ00424 helicase 45; Provisional
Probab=83.83 E-value=5.7 Score=42.66 Aligned_cols=72 Identities=15% Similarity=0.240 Sum_probs=53.4
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHH----cCCCcEEEECCchHHHHHhcCCCC
Q 007402 99 APAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL----AGPPDIVIATPGCMPKCLSTGVLQ 174 (605)
Q Consensus 99 ~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l----~~~~dIvV~TP~~l~~~l~~~~~~ 174 (605)
..++||.|+|++-+..+++.+... ++.+..++|+.+...+...+ .+..+|+||| +.+..|
T Consensus 267 ~~~~ivF~~t~~~~~~l~~~l~~~--------~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT-----~~l~~G--- 330 (401)
T PTZ00424 267 ITQAIIYCNTRRKVDYLTKKMHER--------DFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITT-----DLLARG--- 330 (401)
T ss_pred CCeEEEEecCcHHHHHHHHHHHHC--------CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEc-----ccccCC---
Confidence 456999999999888887766543 57888899998876654433 3678999999 445555
Q ss_pred CcccCCCceEEEEe
Q 007402 175 SKSFSDSLKILVLD 188 (605)
Q Consensus 175 ~~~~l~~l~~lViD 188 (605)
+++.+++++|.-
T Consensus 331 --iDip~v~~VI~~ 342 (401)
T PTZ00424 331 --IDVQQVSLVINY 342 (401)
T ss_pred --cCcccCCEEEEE
Confidence 777788888753
No 451
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=83.68 E-value=1.1 Score=48.18 Aligned_cols=49 Identities=27% Similarity=0.382 Sum_probs=33.7
Q ss_pred HHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHH
Q 007402 58 PLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQ 114 (605)
Q Consensus 58 p~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Q 114 (605)
|.-.+.+++++.|.||||||. ++-+++..+... +.+++|.=|.-+....
T Consensus 10 ~~~~e~~~~li~G~~GsGKT~-~i~~ll~~~~~~-------g~~~iI~D~kg~~~~~ 58 (386)
T PF10412_consen 10 PKDSENRHILIIGATGSGKTQ-AIRHLLDQIRAR-------GDRAIIYDPKGEFTER 58 (386)
T ss_dssp -GGGGGG-EEEEE-TTSSHHH-HHHHHHHHHHHT-------T-EEEEEEETTHHHHH
T ss_pred ccchhhCcEEEECCCCCCHHH-HHHHHHHHHHHc-------CCEEEEEECCchHHHH
Confidence 445667899999999999997 456777777653 5578888888776543
No 452
>PF12846 AAA_10: AAA-like domain
Probab=83.57 E-value=1.8 Score=44.06 Aligned_cols=42 Identities=29% Similarity=0.445 Sum_probs=29.7
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHH
Q 007402 64 KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQ 113 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~ 113 (605)
.++++.|+||||||.+.. .++..++.. +..++|+=|..+...
T Consensus 2 ~h~~i~G~tGsGKT~~~~-~l~~~~~~~-------g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLK-NLLEQLIRR-------GPRVVIFDPKGDYSP 43 (304)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHHc-------CCCEEEEcCCchHHH
Confidence 578999999999997665 455444442 566788877666544
No 453
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=83.54 E-value=1.1 Score=51.56 Aligned_cols=48 Identities=21% Similarity=0.213 Sum_probs=38.0
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q 007402 64 KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMA 121 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~ 121 (605)
.++++.||||||||..|++|-+-.. ...++|+=|--|+...+....++
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~----------~gS~VV~DpKGE~~~~Ta~~R~~ 187 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTF----------KGSVIALDVKGELFELTSRARKA 187 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcC----------CCCEEEEeCCchHHHHHHHHHHh
Confidence 4899999999999999999976431 23588888999998877665544
No 454
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=83.34 E-value=1.1 Score=48.71 Aligned_cols=50 Identities=22% Similarity=0.303 Sum_probs=36.0
Q ss_pred HHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHH
Q 007402 57 IPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQ 114 (605)
Q Consensus 57 Ip~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Q 114 (605)
+|.-...+++++.|+||||||.. +..++..++.. +.+++|+=|..++...
T Consensus 36 ~~~~~~~~h~~i~g~tGsGKt~~-i~~l~~~~~~~-------~~~~vi~D~kg~~~~~ 85 (410)
T cd01127 36 FPKDAEEAHTMIIGTTGTGKTTQ-IRELLASIRAR-------GDRAIIYDPNGGFVSK 85 (410)
T ss_pred CCcchhhccEEEEcCCCCCHHHH-HHHHHHHHHhc-------CCCEEEEeCCcchhHh
Confidence 45555668999999999999975 44455555442 4568898898886543
No 455
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=83.30 E-value=1.6 Score=49.05 Aligned_cols=17 Identities=35% Similarity=0.526 Sum_probs=15.6
Q ss_pred CCCcEEEEcCCCchHHH
Q 007402 62 EGKDVVARAKTGSGKTF 78 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~ 78 (605)
.|+-+.+.||+|||||.
T Consensus 360 ~G~~vaIvG~SGsGKST 376 (529)
T TIGR02868 360 PGERVAILGPSGSGKST 376 (529)
T ss_pred CCCEEEEECCCCCCHHH
Confidence 57889999999999997
No 456
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.20 E-value=5.6 Score=45.51 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=15.4
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 007402 64 KDVVARAKTGSGKTFAYLL 82 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a~~l 82 (605)
..+|+.||.|+|||.++..
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~ 57 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARI 57 (620)
T ss_pred ceEEEECCCCCChHHHHHH
Confidence 4579999999999986544
No 457
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=83.09 E-value=11 Score=39.71 Aligned_cols=41 Identities=15% Similarity=0.308 Sum_probs=25.5
Q ss_pred CCCceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEee
Q 007402 179 SDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSA 220 (605)
Q Consensus 179 l~~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SA 220 (605)
....+++||||||.|.... .+.+.+.++.-|....+|+.|.
T Consensus 108 ~~~~kvviI~~a~~~~~~a-~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 108 ESNKKVYIIEHADKMTASA-ANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred ccCceEEEeehHhhhCHHH-HHHHHHHhcCCCCCceEEEEeC
Confidence 3457899999999986442 3344444455455566665444
No 458
>PRK06321 replicative DNA helicase; Provisional
Probab=83.07 E-value=5.9 Score=43.79 Aligned_cols=111 Identities=14% Similarity=0.197 Sum_probs=53.9
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEE-eCCCCH
Q 007402 65 DVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQL-TSSMPA 143 (605)
Q Consensus 65 dvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l-~~~~~~ 143 (605)
=+++.|+||.|||. |++-+...+... .+..++++.. ..=..|+...+-.... .+....+ .+..+.
T Consensus 228 LiiiaarPgmGKTa-fal~ia~~~a~~------~g~~v~~fSL-EMs~~ql~~Rlla~~s------~v~~~~i~~~~l~~ 293 (472)
T PRK06321 228 LMILAARPAMGKTA-LALNIAENFCFQ------NRLPVGIFSL-EMTVDQLIHRIICSRS------EVESKKISVGDLSG 293 (472)
T ss_pred EEEEEeCCCCChHH-HHHHHHHHHHHh------cCCeEEEEec-cCCHHHHHHHHHHhhc------CCCHHHhhcCCCCH
Confidence 36789999999996 455555554321 1334666542 2223444444332211 1221111 233333
Q ss_pred HHHH------HHHcCCCcEEEE-CCc----hHHHHHhcCCCCCcccCCCceEEEEeCcchhcc
Q 007402 144 SDLR------AALAGPPDIVIA-TPG----CMPKCLSTGVLQSKSFSDSLKILVLDEADLLLS 195 (605)
Q Consensus 144 ~~~~------~~l~~~~dIvV~-TP~----~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~ 195 (605)
..+. ..+...+ +.|- +|+ .+...++.- ..-..+++||||=.++|..
T Consensus 294 ~e~~~~~~a~~~l~~~~-~~idd~~~~ti~~i~~~~r~~-----~~~~~~~lvvIDyLql~~~ 350 (472)
T PRK06321 294 RDFQRIVSVVNEMQEHT-LLIDDQPGLKITDLRARARRM-----KESYDIQFLIIDYLQLLSG 350 (472)
T ss_pred HHHHHHHHHHHHHHcCC-EEEeCCCCCCHHHHHHHHHHH-----HHhcCCCEEEEcchHHcCC
Confidence 3332 2333333 5553 444 233333221 1113578999999998864
No 459
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=82.90 E-value=1.2 Score=45.21 Aligned_cols=43 Identities=28% Similarity=0.308 Sum_probs=27.5
Q ss_pred hCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHH
Q 007402 61 LEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTREL 111 (605)
Q Consensus 61 l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreL 111 (605)
..+..+++.|+||||||.. +-.++..+-.. ..+++++=.+.|+
T Consensus 125 ~~~~~ili~G~tGSGKTT~-l~all~~i~~~-------~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTL-LNALLEEIPPE-------DERIVTIEDPPEL 167 (270)
T ss_dssp HTTEEEEEEESTTSSHHHH-HHHHHHHCHTT-------TSEEEEEESSS-S
T ss_pred ccceEEEEECCCccccchH-HHHHhhhcccc-------ccceEEeccccce
Confidence 3467999999999999974 34444443321 3556776666664
No 460
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=82.89 E-value=1.9 Score=42.35 Aligned_cols=13 Identities=38% Similarity=0.616 Sum_probs=11.8
Q ss_pred EEEEcCCCchHHH
Q 007402 66 VVARAKTGSGKTF 78 (605)
Q Consensus 66 vlv~a~TGsGKT~ 78 (605)
+++.|+.|||||.
T Consensus 1 ~vv~G~pGsGKSt 13 (234)
T PF01443_consen 1 IVVHGVPGSGKST 13 (234)
T ss_pred CEEEcCCCCCHHH
Confidence 4789999999997
No 461
>PRK08506 replicative DNA helicase; Provisional
Probab=82.64 E-value=2.8 Score=46.36 Aligned_cols=48 Identities=17% Similarity=0.203 Sum_probs=28.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHH
Q 007402 63 GKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEV 119 (605)
Q Consensus 63 gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~ 119 (605)
|.=+++.|+||.|||. |++-++..+.. .+..++++.. -.=..|+..++
T Consensus 192 G~LivIaarpg~GKT~-fal~ia~~~~~-------~g~~V~~fSl-EMs~~ql~~Rl 239 (472)
T PRK08506 192 GDLIIIAARPSMGKTT-LCLNMALKALN-------QDKGVAFFSL-EMPAEQLMLRM 239 (472)
T ss_pred CceEEEEcCCCCChHH-HHHHHHHHHHh-------cCCcEEEEeC-cCCHHHHHHHH
Confidence 3457899999999996 44444444433 1344666643 23344555444
No 462
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=82.56 E-value=4.4 Score=45.42 Aligned_cols=72 Identities=18% Similarity=0.316 Sum_probs=54.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHH----cCCCcEEEECCchHHHHHhcCCCC
Q 007402 99 APAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL----AGPPDIVIATPGCMPKCLSTGVLQ 174 (605)
Q Consensus 99 ~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l----~~~~dIvV~TP~~l~~~l~~~~~~ 174 (605)
.+++||.|+|+.-|..+++.+.... ++.+..++|+.+...+...+ .+..+|+|+| +.+..|
T Consensus 367 ~~~~iVFv~s~~~a~~l~~~L~~~~-------g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaT-----dvl~rG--- 431 (518)
T PLN00206 367 KPPAVVFVSSRLGADLLANAITVVT-------GLKALSIHGEKSMKERREVMKSFLVGEVPVIVAT-----GVLGRG--- 431 (518)
T ss_pred CCCEEEEcCCchhHHHHHHHHhhcc-------CcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEe-----cHhhcc---
Confidence 4579999999999888877665432 57888899998876554433 4678999999 456666
Q ss_pred CcccCCCceEEEE
Q 007402 175 SKSFSDSLKILVL 187 (605)
Q Consensus 175 ~~~~l~~l~~lVi 187 (605)
+++.++++||.
T Consensus 432 --iDip~v~~VI~ 442 (518)
T PLN00206 432 --VDLLRVRQVII 442 (518)
T ss_pred --CCcccCCEEEE
Confidence 77788888885
No 463
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=82.32 E-value=4.8 Score=49.53 Aligned_cols=60 Identities=22% Similarity=0.383 Sum_probs=50.8
Q ss_pred CCeEEEEecchhHHHHHHHHHHHc----CCcEE---EEcCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 007402 283 QKKALIFTNTIDMAFRLKLFLEKF----GIKSA---ILNAELPQNSRLHILEEFNAGLFDYLIATDD 342 (605)
Q Consensus 283 ~~k~IIFv~s~~~~~~L~~~L~~~----gi~~~---~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~ 342 (605)
..++||.++|+..+.++...+..+ |+.+. .+||+++..++...++.+.+|..+|||+|..
T Consensus 121 g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~ 187 (1171)
T TIGR01054 121 GKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTM 187 (1171)
T ss_pred CCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 568999999999999888777664 44433 5899999999988999999999999999984
No 464
>PHA00012 I assembly protein
Probab=82.29 E-value=6.4 Score=40.92 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=19.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhh
Q 007402 66 VVARAKTGSGKTFAYLLPLLHRLFN 90 (605)
Q Consensus 66 vlv~a~TGsGKT~a~~lpil~~ll~ 90 (605)
-++.+..|||||+..+.-++..+..
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~ 28 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVK 28 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHc
Confidence 4789999999999887766665433
No 465
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=82.25 E-value=6 Score=42.57 Aligned_cols=47 Identities=19% Similarity=0.337 Sum_probs=34.1
Q ss_pred CceEEEEeCcchhccC-CcHHHHHHHHhhCCC-CceEEEEeeecChhHH
Q 007402 181 SLKILVLDEADLLLSY-GYEDDLKALSAVIPR-GCQCLLMSATSSSDVD 227 (605)
Q Consensus 181 ~l~~lViDEad~i~~~-g~~~~l~~i~~~lp~-~~q~il~SATl~~~v~ 227 (605)
++++++||.++.+... ...+.+..++..+.. +.|+++.|...|.++.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~ 223 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELN 223 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhc
Confidence 6789999999988765 456677777766654 4478877777776653
No 466
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=82.11 E-value=2.6 Score=43.91 Aligned_cols=66 Identities=24% Similarity=0.114 Sum_probs=39.9
Q ss_pred HHHHHHHHHCCCCCChHHHHHHH-HHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHH
Q 007402 35 LRLVHALNKKGIQKPTLIQQASI-PLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTREL 111 (605)
Q Consensus 35 ~~l~~al~~~g~~~pt~iQ~~aI-p~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreL 111 (605)
+.-...|.+. ..+++.|..-+ -.+..+++++++++||||||. ++.+++..+- ...+.+.+=-|.|+
T Consensus 116 ~~t~~~l~~~--gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt-~lnall~~Ip--------~~~rivtIEdt~E~ 182 (312)
T COG0630 116 PITPEDLIEY--GTISPEQAAYLWLAIEARKSIIICGGTASGKTT-LLNALLDFIP--------PEERIVTIEDTPEL 182 (312)
T ss_pred CCCHHHHhhc--CCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHH-HHHHHHHhCC--------chhcEEEEeccccc
Confidence 3333444444 44666665544 445567899999999999996 3454444332 23446666555554
No 467
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=82.02 E-value=19 Score=37.63 Aligned_cols=42 Identities=10% Similarity=-0.005 Sum_probs=27.5
Q ss_pred CChHHHHHHHHHHh----CCC---cEEEEcCCCchHHHHHHHHHHHHHhh
Q 007402 48 KPTLIQQASIPLIL----EGK---DVVARAKTGSGKTFAYLLPLLHRLFN 90 (605)
Q Consensus 48 ~pt~iQ~~aIp~~l----~gk---dvlv~a~TGsGKT~a~~lpil~~ll~ 90 (605)
.++|+|...+..+. +|+ -.|+.||.|.||+..+ .-+.+.++-
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA-~~~a~~llC 51 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLV-ELFSRALLC 51 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHH-HHHHHHHcC
Confidence 35677777665544 343 5899999999999644 334444543
No 468
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=81.97 E-value=3.7 Score=46.54 Aligned_cols=39 Identities=26% Similarity=0.250 Sum_probs=28.0
Q ss_pred cCCCceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEE
Q 007402 178 FSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCL 216 (605)
Q Consensus 178 ~l~~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~i 216 (605)
.+.+-.++|+|||-.-++..-+..+...+..+.++..++
T Consensus 480 ll~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~i 518 (567)
T COG1132 480 LLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTL 518 (567)
T ss_pred HhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEE
Confidence 345567999999998888877777777776555554333
No 469
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=81.92 E-value=9.6 Score=33.09 Aligned_cols=75 Identities=13% Similarity=0.240 Sum_probs=51.9
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHH----cCCCcEEEECCchHHHHHhcCCCC
Q 007402 99 APAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL----AGPPDIVIATPGCMPKCLSTGVLQ 174 (605)
Q Consensus 99 ~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l----~~~~dIvV~TP~~l~~~l~~~~~~ 174 (605)
+.++||.+++..-+.++++.+... ...+..++|+.+.......+ .....|+++|. .+..|
T Consensus 28 ~~~~lvf~~~~~~~~~~~~~l~~~--------~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~-----~~~~G--- 91 (131)
T cd00079 28 GGKVLIFCPSKKMLDELAELLRKP--------GIKVAALHGDGSQEEREEVLKDFREGEIVVLVATD-----VIARG--- 91 (131)
T ss_pred CCcEEEEeCcHHHHHHHHHHHHhc--------CCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcC-----hhhcC---
Confidence 567999999999999988888762 56788888887654433322 24567999983 23344
Q ss_pred CcccCCCceEEEEeCcc
Q 007402 175 SKSFSDSLKILVLDEAD 191 (605)
Q Consensus 175 ~~~~l~~l~~lViDEad 191 (605)
.++....++|+...+
T Consensus 92 --~d~~~~~~vi~~~~~ 106 (131)
T cd00079 92 --IDLPNVSVVINYDLP 106 (131)
T ss_pred --cChhhCCEEEEeCCC
Confidence 555667777776663
No 470
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=81.89 E-value=2 Score=46.57 Aligned_cols=67 Identities=18% Similarity=-0.008 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHH
Q 007402 50 TLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALI 123 (605)
Q Consensus 50 t~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~ 123 (605)
-..|.+|.-..-.|+- .+++=.|||||...++-+.+... ..+.-+++|.+=|+.|+.++...+.+++
T Consensus 164 D~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa~lh~------knPd~~I~~Tfftk~L~s~~r~lv~~F~ 230 (660)
T COG3972 164 DTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAAELHS------KNPDSRIAFTFFTKILASTMRTLVPEFF 230 (660)
T ss_pred cchhheeeeecCCchh-hhhcccCCCchhHHHHHHHHHhc------CCCCceEEEEeehHHHHHHHHHHHHHHH
Confidence 4456665544445554 67888999999865554443322 2456789999999999999999888876
No 471
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=81.69 E-value=3.4 Score=45.36 Aligned_cols=42 Identities=19% Similarity=0.218 Sum_probs=27.0
Q ss_pred CceEEEEeCcchhccCCc-------HHHHHHHHhh---CCCCceEEEEeeec
Q 007402 181 SLKILVLDEADLLLSYGY-------EDDLKALSAV---IPRGCQCLLMSATS 222 (605)
Q Consensus 181 ~l~~lViDEad~i~~~g~-------~~~l~~i~~~---lp~~~q~il~SATl 222 (605)
.-.+|.|||.|.+-+..- ...+.+++.- +.++--+|.+.||=
T Consensus 396 APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATN 447 (752)
T KOG0734|consen 396 APCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATN 447 (752)
T ss_pred CCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccC
Confidence 456899999998875421 1234444433 34566789999993
No 472
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=81.46 E-value=30 Score=37.53 Aligned_cols=79 Identities=20% Similarity=0.177 Sum_probs=43.6
Q ss_pred CceEEEEeCcchhccCC--------cHHHHHHHHh----hCCCCceEEEEeee-cChhHHHHHHHhcCCCeEEEcCCccC
Q 007402 181 SLKILVLDEADLLLSYG--------YEDDLKALSA----VIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGD 247 (605)
Q Consensus 181 ~l~~lViDEad~i~~~g--------~~~~l~~i~~----~lp~~~q~il~SAT-l~~~v~~l~~~~l~~p~~i~l~~~~~ 247 (605)
...+++|||+|.+++.- ..-..+.++. .....-++++++|| +|.++++-....+..-..+.+
T Consensus 245 qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~Rrf~kr~yipl----- 319 (428)
T KOG0740|consen 245 QPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARRRFVKRLYIPL----- 319 (428)
T ss_pred CCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHHHhhceeeecC-----
Confidence 35678899999988643 1122223322 23345588889998 444444433333333222322
Q ss_pred ccccccCCCcEEEEEEccccchHHHHHHHHHhh
Q 007402 248 VKDEVIPKNVQQFWISCSERDKLLYILTLLKLE 280 (605)
Q Consensus 248 ~~~~~~~~~l~q~~~~~~~~~k~~~l~~llk~~ 280 (605)
++.+....++..+++.+
T Consensus 320 ----------------Pd~etr~~~~~~ll~~~ 336 (428)
T KOG0740|consen 320 ----------------PDYETRSLLWKQLLKEQ 336 (428)
T ss_pred ----------------CCHHHHHHHHHHHHHhC
Confidence 23455677777777754
No 473
>PRK05595 replicative DNA helicase; Provisional
Probab=81.29 E-value=4.5 Score=44.38 Aligned_cols=48 Identities=13% Similarity=0.060 Sum_probs=26.6
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHH
Q 007402 64 KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEV 119 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~ 119 (605)
.=+++.|+||.|||.. ++-+...+.. ..+..++++..- .-..|+...+
T Consensus 202 ~liviaarpg~GKT~~-al~ia~~~a~------~~g~~vl~fSlE-ms~~~l~~R~ 249 (444)
T PRK05595 202 DMILIAARPSMGKTTF-ALNIAEYAAL------REGKSVAIFSLE-MSKEQLAYKL 249 (444)
T ss_pred cEEEEEecCCCChHHH-HHHHHHHHHH------HcCCcEEEEecC-CCHHHHHHHH
Confidence 3467899999999964 4444443321 124557777542 2234444443
No 474
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=81.23 E-value=2 Score=33.30 Aligned_cols=27 Identities=26% Similarity=0.445 Sum_probs=20.4
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHHhh
Q 007402 62 EGKDVVARAKTGSGKTFAYLLPLLHRLFN 90 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a~~lpil~~ll~ 90 (605)
.|...++.+++|||||. ++=+++.++.
T Consensus 22 ~g~~tli~G~nGsGKST--llDAi~~~L~ 48 (62)
T PF13555_consen 22 RGDVTLITGPNGSGKST--LLDAIQTVLY 48 (62)
T ss_pred CCcEEEEECCCCCCHHH--HHHHHHHHHc
Confidence 45679999999999998 4555555554
No 475
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.23 E-value=19 Score=39.92 Aligned_cols=17 Identities=24% Similarity=0.288 Sum_probs=14.0
Q ss_pred EEEEcCCCchHHHHHHH
Q 007402 66 VVARAKTGSGKTFAYLL 82 (605)
Q Consensus 66 vlv~a~TGsGKT~a~~l 82 (605)
.|+.||.|+|||.++.+
T Consensus 41 yLf~Gp~G~GKTtlAr~ 57 (486)
T PRK14953 41 YIFAGPRGTGKTTIARI 57 (486)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 57899999999986544
No 476
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=81.15 E-value=1.7 Score=49.22 Aligned_cols=45 Identities=31% Similarity=0.429 Sum_probs=30.3
Q ss_pred EEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCcH-HHHHHHHhhC
Q 007402 157 VIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE-DDLKALSAVI 209 (605)
Q Consensus 157 vV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~-~~l~~i~~~l 209 (605)
|=+-|+++.++|+.-... --++.|||+|.+. .|+. +--.++++.+
T Consensus 488 VGAMPGkiIq~LK~v~t~-------NPliLiDEvDKlG-~g~qGDPasALLElL 533 (906)
T KOG2004|consen 488 VGAMPGKIIQCLKKVKTE-------NPLILIDEVDKLG-SGHQGDPASALLELL 533 (906)
T ss_pred eccCChHHHHHHHhhCCC-------CceEEeehhhhhC-CCCCCChHHHHHHhc
Confidence 446799999999865422 2379999999988 4443 3344455544
No 477
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=81.02 E-value=3.9 Score=43.26 Aligned_cols=43 Identities=16% Similarity=0.204 Sum_probs=25.8
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHH
Q 007402 62 EGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTREL 111 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreL 111 (605)
.+..+++.+|||||||... -.++..+.. ....+++.+--..|+
T Consensus 121 ~~g~ili~G~tGSGKTT~l-~al~~~i~~------~~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTL-ASMIDYINK------NAAGHIITIEDPIEY 163 (343)
T ss_pred cCcEEEEECCCCCCHHHHH-HHHHHhhCc------CCCCEEEEEcCChhh
Confidence 3567999999999999743 333443322 113455655544454
No 478
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=80.87 E-value=15 Score=42.49 Aligned_cols=18 Identities=22% Similarity=0.257 Sum_probs=14.9
Q ss_pred cEEEEcCCCchHHHHHHH
Q 007402 65 DVVARAKTGSGKTFAYLL 82 (605)
Q Consensus 65 dvlv~a~TGsGKT~a~~l 82 (605)
-.|+.||.|+|||.++.+
T Consensus 42 AYLF~GP~GtGKTt~Ari 59 (725)
T PRK07133 42 AYLFSGPRGTGKTSVAKI 59 (725)
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 368999999999986544
No 479
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=80.85 E-value=6 Score=45.05 Aligned_cols=46 Identities=26% Similarity=0.265 Sum_probs=32.4
Q ss_pred EEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCcHHHHHHHHhhC
Q 007402 157 VIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVI 209 (605)
Q Consensus 157 vV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~~~l~~i~~~l 209 (605)
|=+-|+++.+.+...... --++++||.|.|.+.-..+--.++++-|
T Consensus 400 IGamPGrIiQ~mkka~~~-------NPv~LLDEIDKm~ss~rGDPaSALLEVL 445 (782)
T COG0466 400 IGAMPGKIIQGMKKAGVK-------NPVFLLDEIDKMGSSFRGDPASALLEVL 445 (782)
T ss_pred cccCChHHHHHHHHhCCc-------CCeEEeechhhccCCCCCChHHHHHhhc
Confidence 446799999988765422 2379999999998775455555566555
No 480
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=80.79 E-value=6.2 Score=41.96 Aligned_cols=72 Identities=13% Similarity=0.108 Sum_probs=51.3
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcc
Q 007402 98 LAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKS 177 (605)
Q Consensus 98 ~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~ 177 (605)
.+.++||+|+|+.-++.++..++... . ++.+..++|..+...+.... ..+|+||| +.+..| +
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~----~--~~~~~~l~g~~~~~~R~~~~--~~~iLVaT-----dv~~rG-----i 332 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQG----L--GDDIGRITGFAPKKDRERAM--QFDILLGT-----STVDVG-----V 332 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhC----C--CceEEeeecCCCHHHHHHhc--cCCEEEEe-----cHHhcc-----c
Confidence 35679999999999999998887641 1 45677788887766554433 68999999 456666 5
Q ss_pred cCCCceEEEEe
Q 007402 178 FSDSLKILVLD 188 (605)
Q Consensus 178 ~l~~l~~lViD 188 (605)
++... ++|+|
T Consensus 333 Di~~~-~vi~~ 342 (357)
T TIGR03158 333 DFKRD-WLIFS 342 (357)
T ss_pred CCCCc-eEEEC
Confidence 55544 56664
No 481
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=80.71 E-value=8.6 Score=40.47 Aligned_cols=25 Identities=20% Similarity=0.131 Sum_probs=17.1
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHh
Q 007402 64 KDVVARAKTGSGKTFAYLLPLLHRLF 89 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a~~lpil~~ll 89 (605)
+.+|+.||+|+|||.+. ..+...+.
T Consensus 37 ~~~Ll~G~~G~GKt~~a-~~la~~l~ 61 (355)
T TIGR02397 37 HAYLFSGPRGTGKTSIA-RIFAKALN 61 (355)
T ss_pred eEEEEECCCCCCHHHHH-HHHHHHhc
Confidence 35799999999999654 33444443
No 482
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=80.61 E-value=2.4 Score=41.01 Aligned_cols=14 Identities=43% Similarity=0.619 Sum_probs=12.7
Q ss_pred EEEEcCCCchHHHH
Q 007402 66 VVARAKTGSGKTFA 79 (605)
Q Consensus 66 vlv~a~TGsGKT~a 79 (605)
+++.+|||||||..
T Consensus 4 ilI~GptGSGKTTl 17 (198)
T cd01131 4 VLVTGPTGSGKSTT 17 (198)
T ss_pred EEEECCCCCCHHHH
Confidence 78999999999975
No 483
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=80.52 E-value=48 Score=38.32 Aligned_cols=78 Identities=18% Similarity=0.198 Sum_probs=58.6
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHH----HHcCCCcEEEECCchHHHHHhcCCC
Q 007402 98 LAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRA----ALAGPPDIVIATPGCMPKCLSTGVL 173 (605)
Q Consensus 98 ~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~----~l~~~~dIvV~TP~~l~~~l~~~~~ 173 (605)
.+.++||+|+|+.-+..+.+.+... ++.+..++++.+...... .-.+..+|+||| +.+..|
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~--------gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t-----~~L~rG-- 509 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKEL--------GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGI-----NLLREG-- 509 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhc--------ceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEe-----CHHhCC--
Confidence 4778999999999999888877654 688888888776543322 233568899999 456666
Q ss_pred CCcccCCCceEEEEeCcchh
Q 007402 174 QSKSFSDSLKILVLDEADLL 193 (605)
Q Consensus 174 ~~~~~l~~l~~lViDEad~i 193 (605)
+.+..++++|+=|++..
T Consensus 510 ---fdlp~v~lVii~d~eif 526 (652)
T PRK05298 510 ---LDIPEVSLVAILDADKE 526 (652)
T ss_pred ---ccccCCcEEEEeCCccc
Confidence 77788999988888753
No 484
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=80.47 E-value=5.1 Score=43.05 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=16.2
Q ss_pred CCCcEEEEcCCCchHHHH
Q 007402 62 EGKDVVARAKTGSGKTFA 79 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a 79 (605)
.|+-+++.||+|+|||..
T Consensus 167 ~Gq~~~IvG~~g~GKTtL 184 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVL 184 (415)
T ss_pred CCCEEEEECCCCCChhHH
Confidence 678899999999999974
No 485
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=80.45 E-value=10 Score=36.28 Aligned_cols=56 Identities=18% Similarity=0.266 Sum_probs=43.5
Q ss_pred CCeEEEEecchhHHHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 007402 283 QKKALIFTNTIDMAFRLKLFLEKF----GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 342 (605)
Q Consensus 283 ~~k~IIFv~s~~~~~~L~~~L~~~----gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~ 342 (605)
+.++||.|++...+......++.+ ++.+..++|+.+........+ +..+|+|+|..
T Consensus 69 ~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~ 128 (203)
T cd00268 69 GPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPG 128 (203)
T ss_pred CceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChH
Confidence 458999999999988877766665 788889999988766543332 67899999964
No 486
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=80.42 E-value=13 Score=38.82 Aligned_cols=17 Identities=41% Similarity=0.597 Sum_probs=15.0
Q ss_pred CCCcEEEEcCCCchHHH
Q 007402 62 EGKDVVARAKTGSGKTF 78 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~ 78 (605)
++..+++.+|-|||||.
T Consensus 48 EsnsviiigprgsgkT~ 64 (408)
T KOG2228|consen 48 ESNSVIIIGPRGSGKTI 64 (408)
T ss_pred CCCceEEEccCCCCceE
Confidence 34789999999999996
No 487
>PRK09087 hypothetical protein; Validated
Probab=80.33 E-value=5.1 Score=39.64 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=25.7
Q ss_pred EEEEeCcchhccCCcHHHHHHHHhhCCC-CceEEEEeeecChhH
Q 007402 184 ILVLDEADLLLSYGYEDDLKALSAVIPR-GCQCLLMSATSSSDV 226 (605)
Q Consensus 184 ~lViDEad~i~~~g~~~~l~~i~~~lp~-~~q~il~SATl~~~v 226 (605)
+|+||++|.+. . -...+..++..+.. +.++++.|.|.|...
T Consensus 90 ~l~iDDi~~~~-~-~~~~lf~l~n~~~~~g~~ilits~~~p~~~ 131 (226)
T PRK09087 90 PVLIEDIDAGG-F-DETGLFHLINSVRQAGTSLLMTSRLWPSSW 131 (226)
T ss_pred eEEEECCCCCC-C-CHHHHHHHHHHHHhCCCeEEEECCCChHHh
Confidence 79999999863 2 35667777766554 555555555555433
No 488
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=80.21 E-value=2.3 Score=48.14 Aligned_cols=149 Identities=20% Similarity=0.269 Sum_probs=70.9
Q ss_pred hCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEE----
Q 007402 61 LEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQ---- 136 (605)
Q Consensus 61 l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~---- 136 (605)
-.|+-+.+.|++|||||. ++-++..++. ....-|.++..++..--.+.+.+...+++.+..+--..
T Consensus 356 ~~G~~v~IvG~sGsGKST--Ll~lL~gl~~--------~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~N 425 (571)
T TIGR02203 356 EPGETVALVGRSGSGKST--LVNLIPRFYE--------PDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANN 425 (571)
T ss_pred cCCCEEEEECCCCCCHHH--HHHHHHhccC--------CCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHH
Confidence 357889999999999997 3444444333 22244555666654444444555444544321111000
Q ss_pred Ee-C---CCCHHHHHH------------HHcCCCcEEEECCchHHHHHhcCCC-CCcccCCCceEEEEeCcchhccCCcH
Q 007402 137 LT-S---SMPASDLRA------------ALAGPPDIVIATPGCMPKCLSTGVL-QSKSFSDSLKILVLDEADLLLSYGYE 199 (605)
Q Consensus 137 l~-~---~~~~~~~~~------------~l~~~~dIvV~TP~~l~~~l~~~~~-~~~~~l~~l~~lViDEad~i~~~g~~ 199 (605)
+. + ..+.+.... .+..+.|-.|+--+.-+.--+...+ -....+.+-+++++||+---++...+
T Consensus 426 i~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~ 505 (571)
T TIGR02203 426 IAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESE 505 (571)
T ss_pred HhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHH
Confidence 00 1 112221111 1222334444432221110000000 00133455678999999888877777
Q ss_pred HHHHHHHhhCCCCceEEEEe
Q 007402 200 DDLKALSAVIPRGCQCLLMS 219 (605)
Q Consensus 200 ~~l~~i~~~lp~~~q~il~S 219 (605)
..+.+.+..+.++.-+|..|
T Consensus 506 ~~i~~~L~~~~~~~tiIiit 525 (571)
T TIGR02203 506 RLVQAALERLMQGRTTLVIA 525 (571)
T ss_pred HHHHHHHHHHhCCCEEEEEe
Confidence 77766666554444444443
No 489
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=80.13 E-value=1.6 Score=41.22 Aligned_cols=42 Identities=21% Similarity=0.212 Sum_probs=28.7
Q ss_pred cCCCceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEee
Q 007402 178 FSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSA 220 (605)
Q Consensus 178 ~l~~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SA 220 (605)
.+.+-+++++||.-.-++......+..++..+..+ .+++++.
T Consensus 113 l~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~-~tii~~s 154 (178)
T cd03247 113 LLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKD-KTLIWIT 154 (178)
T ss_pred HhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCC-CEEEEEe
Confidence 34567899999998888776677777777666443 3444433
No 490
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=80.12 E-value=6.6 Score=40.86 Aligned_cols=93 Identities=17% Similarity=0.266 Sum_probs=62.3
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCC-CHHHHHHHHc-CCCcEEEECCchHHHHHhcCCCCC
Q 007402 98 LAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSM-PASDLRAALA-GPPDIVIATPGCMPKCLSTGVLQS 175 (605)
Q Consensus 98 ~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~-~~~~~~~~l~-~~~dIvV~TP~~l~~~l~~~~~~~ 175 (605)
.+..+||.+|+.+-.+|++..++..+. ...+..+++.. ...+....+. +..+|+|+| ..|++|
T Consensus 304 ~~~P~liF~p~I~~~eq~a~~lk~~~~------~~~i~~Vhs~d~~R~EkV~~fR~G~~~lLiTT-----TILERG---- 368 (441)
T COG4098 304 TGRPVLIFFPEIETMEQVAAALKKKLP------KETIASVHSEDQHRKEKVEAFRDGKITLLITT-----TILERG---- 368 (441)
T ss_pred cCCcEEEEecchHHHHHHHHHHHhhCC------ccceeeeeccCccHHHHHHHHHcCceEEEEEe-----ehhhcc----
Confidence 356699999999999999999865443 23434444332 2233333444 568999999 466776
Q ss_pred cccCCCceEEEEeCcchhccCCcHHHHHHHHhhC
Q 007402 176 KSFSDSLKILVLDEADLLLSYGYEDDLKALSAVI 209 (605)
Q Consensus 176 ~~~l~~l~~lViDEad~i~~~g~~~~l~~i~~~l 209 (605)
..+.++++.|++--|.++. +..+-.|....
T Consensus 369 -VTfp~vdV~Vlgaeh~vfT---esaLVQIaGRv 398 (441)
T COG4098 369 -VTFPNVDVFVLGAEHRVFT---ESALVQIAGRV 398 (441)
T ss_pred -cccccceEEEecCCccccc---HHHHHHHhhhc
Confidence 6677899999998887764 34455554443
No 491
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=80.10 E-value=11 Score=44.58 Aligned_cols=73 Identities=16% Similarity=0.305 Sum_probs=55.2
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHc----CCCcEEEECCchHHHHHhcCCCC
Q 007402 99 APAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALA----GPPDIVIATPGCMPKCLSTGVLQ 174 (605)
Q Consensus 99 ~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~----~~~dIvV~TP~~l~~~l~~~~~~ 174 (605)
...+||.+|++.-+.++++.+.... .. ++.+..++|+.+...+...+. +...||||| +....+
T Consensus 212 ~g~iLVFlpg~~ei~~l~~~L~~~~---~~--~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvAT-----nIAErs--- 278 (812)
T PRK11664 212 SGSLLLFLPGVGEIQRVQEQLASRV---AS--DVLLCPLYGALSLAEQQKAILPAPAGRRKVVLAT-----NIAETS--- 278 (812)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHhc---cC--CceEEEeeCCCCHHHHHHHhccccCCCeEEEEec-----chHHhc---
Confidence 4569999999999999998887532 12 678899999999887777665 336899999 455555
Q ss_pred CcccCCCceEEE
Q 007402 175 SKSFSDSLKILV 186 (605)
Q Consensus 175 ~~~~l~~l~~lV 186 (605)
+.+.++.+||
T Consensus 279 --LtIp~V~~VI 288 (812)
T PRK11664 279 --LTIEGIRLVV 288 (812)
T ss_pred --ccccCceEEE
Confidence 6777787555
No 492
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=79.83 E-value=1.8 Score=43.89 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=21.5
Q ss_pred HHHHHHHhCCCcEEEEcCCCchHHHHH
Q 007402 54 QASIPLILEGKDVVARAKTGSGKTFAY 80 (605)
Q Consensus 54 ~~aIp~~l~gkdvlv~a~TGsGKT~a~ 80 (605)
+.++..+..|+.+++.+++|+|||...
T Consensus 12 ~~~l~~l~~g~~vLL~G~~GtGKT~lA 38 (262)
T TIGR02640 12 SRALRYLKSGYPVHLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHHHhcCCeEEEEcCCCCCHHHHH
Confidence 344455667899999999999999854
No 493
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=79.77 E-value=7.6 Score=42.40 Aligned_cols=49 Identities=12% Similarity=0.112 Sum_probs=27.3
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHH
Q 007402 63 GKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEV 119 (605)
Q Consensus 63 gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~ 119 (605)
|.=+++.|+||+|||. |++-++..+... .+..++++.. -.=..|+...+
T Consensus 195 G~l~vi~g~pg~GKT~-~~l~~a~~~a~~------~g~~vl~~Sl-Em~~~~i~~R~ 243 (434)
T TIGR00665 195 SDLIILAARPSMGKTA-FALNIAENAAIK------EGKPVAFFSL-EMSAEQLAMRM 243 (434)
T ss_pred CeEEEEEeCCCCChHH-HHHHHHHHHHHh------CCCeEEEEeC-cCCHHHHHHHH
Confidence 3457899999999996 444444443321 1344666653 22234444443
No 494
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=79.71 E-value=10 Score=44.91 Aligned_cols=73 Identities=14% Similarity=0.269 Sum_probs=54.4
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcC----CCcEEEECCchHHHHHhcCCCC
Q 007402 99 APAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAG----PPDIVIATPGCMPKCLSTGVLQ 174 (605)
Q Consensus 99 ~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~----~~dIvV~TP~~l~~~l~~~~~~ 174 (605)
...+||.+|+++-+.++++.+.... .. ++.+..++|+.+...+...+.. ...||||| +....+
T Consensus 209 ~g~iLVFlpg~~eI~~l~~~L~~~~---~~--~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVAT-----nIAErg--- 275 (819)
T TIGR01970 209 TGSILVFLPGQAEIRRVQEQLAERL---DS--DVLICPLYGELSLAAQDRAIKPDPQGRRKVVLAT-----NIAETS--- 275 (819)
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhc---CC--CcEEEEecCCCCHHHHHHHHhhcccCCeEEEEec-----chHhhc---
Confidence 3469999999999998888887532 12 6889999999998888777752 35799999 455554
Q ss_pred CcccCCCceEEE
Q 007402 175 SKSFSDSLKILV 186 (605)
Q Consensus 175 ~~~~l~~l~~lV 186 (605)
+.+.++++||
T Consensus 276 --ItIp~V~~VI 285 (819)
T TIGR01970 276 --LTIEGIRVVI 285 (819)
T ss_pred --ccccCceEEE
Confidence 6667776444
No 495
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=79.31 E-value=3.8 Score=50.41 Aligned_cols=61 Identities=21% Similarity=0.300 Sum_probs=48.0
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHH
Q 007402 62 EGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIEL 125 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~ 125 (605)
.+++++|.|..|||||.+...-++..++... ...-..+||++-|+.=+..+..++..-+..
T Consensus 15 ~~~~~lveASAGSGKT~vL~~r~lrlLl~~~---~~~v~~ILvvTFT~aAa~Emk~RI~~~L~~ 75 (1139)
T COG1074 15 PGQSVLVEASAGTGKTFVLAERVLRLLLEGG---PLDVDEILVVTFTKAAAAEMKERIRDRLKE 75 (1139)
T ss_pred CCCcEEEEEcCCCCchhHHHHHHHHHHhhcC---CCChhHeeeeeccHHHHHHHHHHHHHHHHH
Confidence 4679999999999999998888888888742 123457999999998887777777665543
No 496
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=79.23 E-value=0.87 Score=43.00 Aligned_cols=46 Identities=26% Similarity=0.117 Sum_probs=28.0
Q ss_pred HHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhcc
Q 007402 148 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLS 195 (605)
Q Consensus 148 ~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~ 195 (605)
.......||||++...|++-.....+. .+. ..-.+|||||||.+.+
T Consensus 114 r~~~~~adivi~~y~yl~~~~~~~~~~-~~~-~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 114 RELAKNADIVICNYNYLFDPSIRKSLF-GID-LKDNIVIFDEAHNLED 159 (174)
T ss_dssp HHCGGG-SEEEEETHHHHSHHHHHHHC-T---CCCEEEEETTGGGCGG
T ss_pred HHhcccCCEEEeCHHHHhhHHHHhhhc-ccc-ccCcEEEEecccchHH
Confidence 334467899999988776543332210 022 2346899999998764
No 497
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=79.20 E-value=8.6 Score=45.32 Aligned_cols=31 Identities=23% Similarity=0.277 Sum_probs=21.4
Q ss_pred ECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccC
Q 007402 159 ATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSY 196 (605)
Q Consensus 159 ~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~ 196 (605)
+.|+++...+.... . .-.+++|||+|.+...
T Consensus 401 ~~~G~~~~~l~~~~-----~--~~~villDEidk~~~~ 431 (784)
T PRK10787 401 SMPGKLIQKMAKVG-----V--KNPLFLLDEIDKMSSD 431 (784)
T ss_pred CCCcHHHHHHHhcC-----C--CCCEEEEEChhhcccc
Confidence 36888887776532 1 1247999999998764
No 498
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=79.03 E-value=0.31 Score=55.75 Aligned_cols=101 Identities=21% Similarity=0.127 Sum_probs=84.0
Q ss_pred CeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcC-CCcEEEEcCCCCcccccccCCCCCcccccc
Q 007402 284 KKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAG-LFDYLIATDDTQTKEKDQSDEGGHVDSRKS 362 (605)
Q Consensus 284 ~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g-~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~ 362 (605)
.++|||+.-+.-+..+...|...++....+.|.|....|...+..|..+ .+.+++.+-
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Sl--------------------- 598 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSL--------------------- 598 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHH---------------------
Confidence 3999999999999999999888899999999999999999999999843 233333321
Q ss_pred cCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCccE
Q 007402 363 KKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGAS 416 (605)
Q Consensus 363 ~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~a 416 (605)
+..|+ |+++-...+|+..|+-+++..--|.|-|+.|-|+.-.+
T Consensus 599 ---------kag~~--glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v 641 (674)
T KOG1001|consen 599 ---------KAGKV--GLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPV 641 (674)
T ss_pred ---------HHhhh--hhchhhhhHHHhhchhcChHHHHHHHHHHHHhccccee
Confidence 12223 99999999999999999999999999999999986554
No 499
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=79.01 E-value=1.4 Score=50.42 Aligned_cols=46 Identities=22% Similarity=0.200 Sum_probs=36.2
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHH
Q 007402 64 KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEV 119 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~ 119 (605)
.++++.||||||||..+++|-+-.. +..+||+=|--|+...+....
T Consensus 176 ~HvlviapTgSGKgvg~ViPnLL~~----------~~S~VV~D~KGE~~~~Tag~R 221 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGLVVPTLLSW----------GHSSVITDLKGELWALTAGWR 221 (636)
T ss_pred ceEEEEecCCCCCceEEEccchhhC----------CCCEEEEeCcHHHHHHHHHHH
Confidence 5799999999999999999977431 345899999999976555443
No 500
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=78.95 E-value=1.6 Score=50.17 Aligned_cols=48 Identities=25% Similarity=0.153 Sum_probs=38.3
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q 007402 64 KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMA 121 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~ 121 (605)
.++++.||||||||..+++|-+-.. ...+||+=|--|+...+....++
T Consensus 145 ~hvLviApTrSGKgvg~VIPnLL~~----------~~S~VV~D~KGEl~~~Ta~~R~~ 192 (663)
T PRK13876 145 EHVLCFAPTRSGKGVGLVVPTLLTW----------PGSAIVHDIKGENWQLTAGFRAR 192 (663)
T ss_pred ceEEEEecCCCCcceeEehhhHHhC----------CCCEEEEeCcchHHHHHHHHHHh
Confidence 5799999999999999999976532 23488888999998877665444
Done!