Query 007402
Match_columns 605
No_of_seqs 418 out of 2942
Neff 8.1
Searched_HMMs 29240
Date Tue Mar 26 00:54:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007402.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007402hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 3.3E-63 1.1E-67 538.6 43.7 368 22-437 52-422 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 1.8E-59 6.2E-64 504.8 42.0 371 21-437 10-397 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 9.5E-59 3.2E-63 498.6 37.2 365 21-437 32-397 (410)
4 1s2m_A Putative ATP-dependent 100.0 5E-56 1.7E-60 475.6 42.4 361 23-436 18-378 (400)
5 3eiq_A Eukaryotic initiation f 100.0 5.5E-57 1.9E-61 484.7 34.9 363 23-437 37-401 (414)
6 1xti_A Probable ATP-dependent 100.0 1.7E-55 5.8E-60 469.5 42.0 351 25-425 7-359 (391)
7 3fht_A ATP-dependent RNA helic 100.0 9.9E-56 3.4E-60 474.3 37.6 361 22-435 21-392 (412)
8 3sqw_A ATP-dependent RNA helic 100.0 1.3E-55 4.3E-60 496.1 36.2 374 24-435 15-410 (579)
9 3pey_A ATP-dependent RNA helic 100.0 9.7E-55 3.3E-59 463.3 40.6 346 24-425 3-358 (395)
10 3i5x_A ATP-dependent RNA helic 100.0 3.2E-55 1.1E-59 491.0 36.1 373 25-435 67-461 (563)
11 1hv8_A Putative ATP-dependent 100.0 2.6E-54 9.1E-59 455.3 40.3 354 24-436 4-358 (367)
12 3fmp_B ATP-dependent RNA helic 100.0 9.4E-57 3.2E-61 493.8 18.4 347 25-424 91-447 (479)
13 1fuu_A Yeast initiation factor 100.0 5.4E-56 1.9E-60 473.5 22.0 362 21-435 16-378 (394)
14 2z0m_A 337AA long hypothetical 100.0 1.6E-51 5.4E-56 429.3 35.3 333 33-434 1-333 (337)
15 2v1x_A ATP-dependent DNA helic 100.0 3.4E-51 1.2E-55 458.6 35.2 344 21-428 16-379 (591)
16 1oyw_A RECQ helicase, ATP-depe 100.0 2.2E-49 7.4E-54 439.1 34.4 335 26-428 2-348 (523)
17 3oiy_A Reverse gyrase helicase 100.0 8.2E-50 2.8E-54 430.3 26.0 325 37-436 10-376 (414)
18 3fho_A ATP-dependent RNA helic 100.0 1.1E-50 3.8E-55 448.6 19.7 356 24-435 117-483 (508)
19 1tf5_A Preprotein translocase 100.0 1.2E-48 4.1E-53 440.0 28.0 341 33-425 61-547 (844)
20 4ddu_A Reverse gyrase; topoiso 100.0 1.4E-46 4.7E-51 446.4 27.4 323 43-438 74-505 (1104)
21 4a2p_A RIG-I, retinoic acid in 100.0 1.2E-45 4.2E-50 411.5 30.3 333 44-425 3-510 (556)
22 2fsf_A Preprotein translocase 100.0 2.1E-45 7.2E-50 412.5 31.6 330 44-425 71-585 (853)
23 3l9o_A ATP-dependent RNA helic 100.0 1.4E-45 4.8E-50 437.9 29.8 330 26-423 162-597 (1108)
24 1nkt_A Preprotein translocase 100.0 5.2E-45 1.8E-49 409.6 30.2 331 43-425 107-619 (922)
25 3tbk_A RIG-I helicase domain; 100.0 3.4E-45 1.1E-49 407.3 28.4 337 48-429 4-513 (555)
26 2ykg_A Probable ATP-dependent 100.0 1E-45 3.5E-50 424.1 22.7 348 38-430 3-523 (696)
27 1gku_B Reverse gyrase, TOP-RG; 100.0 1.8E-45 6.1E-50 436.9 20.8 341 26-437 30-468 (1054)
28 2va8_A SSO2462, SKI2-type heli 100.0 5.2E-44 1.8E-48 411.2 32.1 334 24-424 6-409 (715)
29 2zj8_A DNA helicase, putative 100.0 2.9E-44 9.8E-49 413.6 28.0 333 26-424 1-388 (720)
30 4a2q_A RIG-I, retinoic acid in 100.0 8.8E-44 3E-48 413.7 31.2 338 43-425 243-751 (797)
31 2p6r_A Afuhel308 helicase; pro 100.0 1.9E-44 6.6E-49 413.9 22.8 332 26-424 1-389 (702)
32 4a2w_A RIG-I, retinoic acid in 100.0 6.2E-43 2.1E-47 411.5 30.1 348 33-425 233-751 (936)
33 2xgj_A ATP-dependent RNA helic 100.0 7.1E-42 2.4E-46 402.9 36.0 314 41-423 80-499 (1010)
34 1wp9_A ATP-dependent RNA helic 100.0 2.2E-41 7.5E-46 368.5 34.0 327 48-425 9-477 (494)
35 4gl2_A Interferon-induced heli 100.0 2.1E-42 7.1E-47 396.9 15.1 333 47-424 6-519 (699)
36 4a4z_A Antiviral helicase SKI2 100.0 1.8E-40 6.1E-45 390.9 31.4 309 43-420 35-489 (997)
37 1gm5_A RECG; helicase, replica 100.0 5.4E-41 1.8E-45 384.3 22.8 321 35-425 356-699 (780)
38 2whx_A Serine protease/ntpase/ 100.0 5.8E-43 2E-47 393.3 6.0 319 26-435 149-493 (618)
39 2eyq_A TRCF, transcription-rep 100.0 3.2E-39 1.1E-43 385.5 35.8 326 29-424 584-923 (1151)
40 2jlq_A Serine protease subunit 100.0 2.5E-41 8.4E-46 368.2 10.8 287 45-422 1-310 (451)
41 4f92_B U5 small nuclear ribonu 100.0 9.1E-39 3.1E-43 391.9 32.4 342 33-429 911-1314(1724)
42 2oca_A DAR protein, ATP-depend 100.0 9.5E-40 3.3E-44 361.2 18.5 317 46-421 111-453 (510)
43 4f92_B U5 small nuclear ribonu 100.0 5.8E-39 2E-43 393.6 25.3 336 45-429 76-479 (1724)
44 2xau_A PRE-mRNA-splicing facto 100.0 8.1E-40 2.8E-44 376.4 16.0 343 17-425 63-445 (773)
45 3fe2_A Probable ATP-dependent 100.0 3.2E-38 1.1E-42 315.2 24.4 216 21-244 24-239 (242)
46 2wv9_A Flavivirin protease NS2 100.0 2.1E-41 7.1E-46 383.1 0.4 302 40-435 202-548 (673)
47 2fwr_A DNA repair protein RAD2 100.0 3.7E-39 1.3E-43 353.1 14.6 296 48-422 93-453 (472)
48 1yks_A Genome polyprotein [con 100.0 7.4E-40 2.5E-44 355.3 8.4 283 59-435 4-314 (440)
49 3o8b_A HCV NS3 protease/helica 100.0 3.1E-39 1.1E-43 360.7 10.6 277 49-426 218-517 (666)
50 3ber_A Probable ATP-dependent 100.0 1.1E-36 3.7E-41 305.6 24.3 211 21-243 38-248 (249)
51 1q0u_A Bstdead; DEAD protein, 100.0 6E-37 2.1E-41 301.1 20.1 211 25-244 3-213 (219)
52 2z83_A Helicase/nucleoside tri 100.0 2E-38 6.8E-43 345.9 10.3 282 45-423 6-313 (459)
53 3iuy_A Probable ATP-dependent 100.0 5.9E-37 2E-41 302.9 19.6 216 18-242 11-228 (228)
54 3fmo_B ATP-dependent RNA helic 100.0 4.3E-37 1.5E-41 317.0 18.6 207 24-244 90-299 (300)
55 1vec_A ATP-dependent RNA helic 100.0 4.7E-36 1.6E-40 291.3 24.1 203 26-240 3-205 (206)
56 1wrb_A DJVLGB; RNA helicase, D 100.0 1.1E-36 3.6E-41 306.1 19.9 224 24-260 21-252 (253)
57 3bor_A Human initiation factor 100.0 2.3E-36 7.9E-41 300.8 21.3 213 18-243 22-235 (237)
58 2oxc_A Probable ATP-dependent 100.0 5.5E-36 1.9E-40 296.7 22.2 210 21-243 19-229 (230)
59 3jux_A Protein translocase sub 100.0 1.8E-34 6.2E-39 317.8 36.4 323 44-425 72-589 (822)
60 2gxq_A Heat resistant RNA depe 100.0 1.2E-35 4.2E-40 288.4 22.7 205 26-242 1-205 (207)
61 2pl3_A Probable ATP-dependent 100.0 1.4E-35 4.7E-40 294.7 23.2 214 22-244 21-234 (236)
62 3ly5_A ATP-dependent RNA helic 100.0 1.2E-35 4E-40 300.4 20.6 208 24-239 50-259 (262)
63 2v6i_A RNA helicase; membrane, 100.0 6.7E-36 2.3E-40 323.4 19.9 270 62-421 1-289 (431)
64 1qde_A EIF4A, translation init 100.0 1.7E-35 5.8E-40 291.4 20.8 208 23-244 11-218 (224)
65 3h1t_A Type I site-specific re 100.0 1.4E-35 4.7E-40 333.8 21.9 313 47-412 177-545 (590)
66 3rc3_A ATP-dependent RNA helic 100.0 1.5E-34 5.1E-39 326.3 27.6 302 27-424 124-445 (677)
67 1t6n_A Probable ATP-dependent 100.0 8.1E-35 2.8E-39 285.9 21.2 206 24-241 12-219 (220)
68 3dkp_A Probable ATP-dependent 100.0 1.8E-34 6.1E-39 288.3 16.6 214 21-244 20-242 (245)
69 3dmq_A RNA polymerase-associat 100.0 4.9E-33 1.7E-37 328.0 25.2 326 47-425 152-615 (968)
70 1z63_A Helicase of the SNF2/RA 100.0 1.9E-31 6.5E-36 294.0 27.3 315 47-423 36-453 (500)
71 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 5.3E-31 1.8E-35 309.0 23.2 332 35-423 251-709 (1038)
72 2ipc_A Preprotein translocase 100.0 1.7E-28 5.9E-33 274.9 37.9 134 44-194 76-215 (997)
73 1z3i_X Similar to RAD54-like; 100.0 2.7E-27 9.4E-32 268.3 35.9 324 48-423 55-528 (644)
74 3mwy_W Chromo domain-containin 100.0 3E-28 1E-32 282.8 26.1 319 48-423 236-684 (800)
75 1c4o_A DNA nucleotide excision 100.0 1.4E-27 4.7E-32 270.9 29.4 133 268-434 423-561 (664)
76 2d7d_A Uvrabc system protein B 99.9 1.1E-26 3.7E-31 263.4 26.6 132 268-433 429-566 (661)
77 2p6n_A ATP-dependent RNA helic 99.9 3.6E-27 1.2E-31 226.7 16.8 167 231-437 9-176 (191)
78 2hjv_A ATP-dependent RNA helic 99.9 1.7E-26 6E-31 216.1 19.5 151 252-436 5-155 (163)
79 1t5i_A C_terminal domain of A 99.9 4.3E-26 1.5E-30 215.4 18.4 148 254-435 3-151 (172)
80 2jgn_A DBX, DDX3, ATP-dependen 99.9 3.6E-26 1.2E-30 218.6 17.9 153 252-437 15-167 (185)
81 2rb4_A ATP-dependent RNA helic 99.9 5.9E-26 2E-30 215.0 19.1 150 253-436 4-160 (175)
82 1fuk_A Eukaryotic initiation f 99.9 9.2E-26 3.2E-30 211.6 18.1 148 255-436 2-150 (165)
83 3eaq_A Heat resistant RNA depe 99.9 5E-25 1.7E-29 215.3 18.5 148 256-437 5-152 (212)
84 3i32_A Heat resistant RNA depe 99.9 1.3E-24 4.5E-29 222.9 18.5 148 256-437 2-149 (300)
85 2yjt_D ATP-dependent RNA helic 99.8 9E-26 3.1E-30 212.7 0.0 147 255-435 2-149 (170)
86 3b6e_A Interferon-induced heli 99.9 1.1E-23 3.8E-28 204.9 9.8 171 44-221 29-216 (216)
87 2vl7_A XPD; helicase, unknown 99.9 2E-21 6.9E-26 215.7 19.7 131 44-194 4-188 (540)
88 3llm_A ATP-dependent RNA helic 99.9 4.2E-22 1.4E-26 197.6 11.6 186 33-239 46-233 (235)
89 1rif_A DAR protein, DNA helica 99.8 8.1E-22 2.8E-26 200.9 8.5 161 47-232 112-272 (282)
90 3crv_A XPD/RAD3 related DNA he 99.8 8.2E-19 2.8E-23 195.3 28.3 132 45-195 1-187 (551)
91 2fz4_A DNA repair protein RAD2 99.8 1E-18 3.5E-23 173.4 15.1 138 48-225 93-231 (237)
92 1z5z_A Helicase of the SNF2/RA 99.7 4.3E-17 1.5E-21 164.8 14.1 126 265-423 93-224 (271)
93 4a15_A XPD helicase, ATP-depen 99.7 3.1E-16 1.1E-20 176.3 19.2 72 48-126 3-78 (620)
94 1w36_D RECD, exodeoxyribonucle 98.9 6.5E-09 2.2E-13 116.6 15.5 145 50-221 151-298 (608)
95 2gk6_A Regulator of nonsense t 97.9 8.6E-05 2.9E-09 83.4 14.4 68 47-121 179-246 (624)
96 2xzl_A ATP-dependent helicase 97.9 0.00011 3.7E-09 84.7 15.3 69 47-122 359-427 (802)
97 4b3f_X DNA-binding protein smu 97.9 2.8E-05 9.5E-10 87.8 10.3 66 48-121 189-255 (646)
98 3e1s_A Exodeoxyribonuclease V, 97.9 4.1E-05 1.4E-09 85.0 10.8 127 48-221 189-315 (574)
99 3upu_A ATP-dependent DNA helic 97.8 8.9E-05 3E-09 80.1 11.4 135 41-220 18-163 (459)
100 2wjy_A Regulator of nonsense t 97.7 0.00019 6.4E-09 82.6 13.8 68 47-121 355-422 (800)
101 3lfu_A DNA helicase II; SF1 he 97.4 0.0078 2.7E-07 67.5 21.3 71 47-123 8-78 (647)
102 2o0j_A Terminase, DNA packagin 96.8 0.011 3.8E-07 61.8 13.7 74 48-127 163-236 (385)
103 3hgt_A HDA1 complex subunit 3; 96.7 0.013 4.3E-07 59.6 12.4 121 266-424 107-238 (328)
104 3cpe_A Terminase, DNA packagin 96.4 0.03 1E-06 62.2 14.5 73 48-126 163-235 (592)
105 3ec2_A DNA replication protein 96.1 0.022 7.4E-07 52.5 9.3 19 62-80 37-55 (180)
106 3vkw_A Replicase large subunit 95.7 0.012 4.2E-07 62.4 6.3 107 65-221 163-269 (446)
107 1pjr_A PCRA; DNA repair, DNA r 95.3 0.032 1.1E-06 63.5 8.5 72 47-124 10-81 (724)
108 2kjq_A DNAA-related protein; s 95.3 0.0069 2.3E-07 54.6 2.3 37 26-79 14-52 (149)
109 2orw_A Thymidine kinase; TMTK, 95.0 0.02 7E-07 53.4 4.9 39 62-108 2-40 (184)
110 3u4q_A ATP-dependent helicase/ 94.9 0.041 1.4E-06 66.5 8.1 73 48-124 10-82 (1232)
111 2b8t_A Thymidine kinase; deoxy 94.8 0.073 2.5E-06 51.2 8.3 40 62-109 11-50 (223)
112 1xx6_A Thymidine kinase; NESG, 94.8 0.071 2.4E-06 50.0 8.0 38 63-108 8-45 (191)
113 1uaa_A REP helicase, protein ( 94.8 0.037 1.3E-06 62.4 7.2 70 48-123 2-71 (673)
114 2zpa_A Uncharacterized protein 94.6 0.046 1.6E-06 61.0 6.9 113 48-223 175-289 (671)
115 1d2n_A N-ethylmaleimide-sensit 94.5 0.13 4.3E-06 50.8 9.5 17 64-80 65-81 (272)
116 1jbk_A CLPB protein; beta barr 94.4 0.84 2.9E-05 41.2 14.4 18 63-80 43-60 (195)
117 2v1u_A Cell division control p 94.2 0.21 7.3E-06 51.3 10.9 28 182-209 131-159 (387)
118 2hjv_A ATP-dependent RNA helic 94.2 0.6 2.1E-05 42.0 12.7 73 99-189 35-111 (163)
119 3te6_A Regulatory protein SIR3 94.1 0.2 6.9E-06 50.8 10.2 40 181-223 132-174 (318)
120 1l8q_A Chromosomal replication 94.1 0.15 5.2E-06 51.6 9.4 17 63-79 37-53 (324)
121 2p6n_A ATP-dependent RNA helic 94.1 0.42 1.4E-05 44.5 11.6 71 99-187 54-128 (191)
122 1gm5_A RECG; helicase, replica 94.0 0.16 5.6E-06 58.0 10.0 61 283-343 417-481 (780)
123 3bos_A Putative DNA replicatio 93.8 0.078 2.7E-06 50.6 6.2 18 62-79 51-68 (242)
124 2chg_A Replication factor C sm 93.8 0.96 3.3E-05 41.9 13.7 40 180-220 101-140 (226)
125 2p65_A Hypothetical protein PF 93.7 0.23 8E-06 45.0 9.1 18 63-80 43-60 (187)
126 2rb4_A ATP-dependent RNA helic 93.6 0.24 8.1E-06 45.3 8.9 71 99-187 34-108 (175)
127 3h4m_A Proteasome-activating n 93.6 0.071 2.4E-06 52.8 5.6 55 23-79 11-67 (285)
128 2j9r_A Thymidine kinase; TK1, 93.5 0.11 3.8E-06 49.5 6.4 39 63-109 28-66 (214)
129 4b4t_J 26S protease regulatory 93.4 0.038 1.3E-06 58.0 3.2 56 21-79 140-198 (405)
130 3u61_B DNA polymerase accessor 93.4 0.23 7.8E-06 50.2 9.1 39 181-219 105-143 (324)
131 1a5t_A Delta prime, HOLB; zinc 93.4 0.19 6.6E-06 51.3 8.5 40 49-89 3-49 (334)
132 1fuk_A Eukaryotic initiation f 93.2 0.34 1.2E-05 43.7 9.1 72 99-188 30-105 (165)
133 3eaq_A Heat resistant RNA depe 93.0 0.3 1E-05 46.3 8.7 71 99-187 31-105 (212)
134 1njg_A DNA polymerase III subu 92.7 0.68 2.3E-05 43.5 11.0 16 65-80 47-62 (250)
135 2qby_B CDC6 homolog 3, cell di 92.5 0.34 1.2E-05 49.9 9.1 35 184-219 136-171 (384)
136 3oiy_A Reverse gyrase helicase 92.3 0.51 1.7E-05 49.3 10.2 62 281-342 62-126 (414)
137 1t5i_A C_terminal domain of A 92.3 0.33 1.1E-05 44.3 7.7 72 99-188 31-106 (172)
138 3cf0_A Transitional endoplasmi 92.2 1.2 4.2E-05 44.4 12.6 55 24-79 10-65 (301)
139 3eie_A Vacuolar protein sortin 92.2 0.56 1.9E-05 47.4 10.0 51 24-80 13-68 (322)
140 1xwi_A SKD1 protein; VPS4B, AA 92.1 0.33 1.1E-05 49.3 8.2 52 24-79 7-61 (322)
141 3kl4_A SRP54, signal recogniti 92.1 0.88 3E-05 48.1 11.7 54 180-233 178-234 (433)
142 1w4r_A Thymidine kinase; type 91.9 0.26 8.8E-06 46.2 6.5 39 62-108 19-57 (195)
143 2w58_A DNAI, primosome compone 91.9 0.64 2.2E-05 43.1 9.4 17 64-80 55-71 (202)
144 2z4s_A Chromosomal replication 91.7 0.73 2.5E-05 48.9 10.6 41 181-221 194-236 (440)
145 1g5t_A COB(I)alamin adenosyltr 91.5 2.8 9.7E-05 39.1 13.1 53 180-232 119-173 (196)
146 1sxj_E Activator 1 40 kDa subu 91.3 0.86 3E-05 46.3 10.4 43 180-223 133-175 (354)
147 3syl_A Protein CBBX; photosynt 91.2 0.13 4.4E-06 51.5 4.0 17 64-80 68-84 (309)
148 2orv_A Thymidine kinase; TP4A 91.2 0.43 1.5E-05 45.9 7.4 40 62-109 18-57 (234)
149 3i5x_A ATP-dependent RNA helic 91.2 5.4 0.00018 43.3 17.3 91 98-207 338-432 (563)
150 3vfd_A Spastin; ATPase, microt 90.6 0.51 1.7E-05 49.1 7.9 18 63-80 148-165 (389)
151 2jgn_A DBX, DDX3, ATP-dependen 90.4 0.54 1.9E-05 43.4 7.2 71 99-187 46-120 (185)
152 2q6t_A DNAB replication FORK h 90.4 0.71 2.4E-05 49.0 9.0 37 64-107 201-237 (444)
153 2qp9_X Vacuolar protein sortin 90.4 0.88 3E-05 46.8 9.4 17 64-80 85-101 (355)
154 4b4t_K 26S protease regulatory 90.4 0.14 4.7E-06 54.3 3.3 55 22-79 165-222 (428)
155 4b4t_H 26S protease regulatory 90.2 0.21 7.3E-06 53.1 4.6 55 22-79 202-259 (467)
156 3pfi_A Holliday junction ATP-d 90.1 1.9 6.6E-05 43.4 11.7 44 25-80 25-72 (338)
157 3hu3_A Transitional endoplasmi 89.9 1.2 4E-05 48.0 10.2 54 24-80 199-255 (489)
158 3sqw_A ATP-dependent RNA helic 89.3 9.3 0.00032 41.6 17.3 78 98-190 287-368 (579)
159 2qby_A CDC6 homolog 1, cell di 89.2 0.44 1.5E-05 48.8 6.1 18 63-80 45-62 (386)
160 1fnn_A CDC6P, cell division co 89.0 0.4 1.4E-05 49.4 5.5 16 65-80 46-61 (389)
161 2i4i_A ATP-dependent RNA helic 89.0 1.5 5.2E-05 45.4 10.1 72 98-187 275-350 (417)
162 1jr3_A DNA polymerase III subu 88.9 2.7 9.1E-05 42.8 11.8 39 180-219 118-156 (373)
163 3e2i_A Thymidine kinase; Zn-bi 88.8 0.68 2.3E-05 44.1 6.4 40 62-109 27-66 (219)
164 3i32_A Heat resistant RNA depe 88.6 0.71 2.4E-05 46.4 6.9 71 99-187 28-102 (300)
165 1sxj_D Activator 1 41 kDa subu 88.4 1.1 3.7E-05 45.4 8.3 39 181-220 133-171 (353)
166 2eyq_A TRCF, transcription-rep 88.3 1.6 5.5E-05 52.2 10.7 68 275-342 644-715 (1151)
167 3pey_A ATP-dependent RNA helic 87.9 7.7 0.00026 39.3 14.6 75 99-191 243-321 (395)
168 3dm5_A SRP54, signal recogniti 87.6 5.6 0.00019 42.0 13.3 53 181-233 182-235 (443)
169 4ddu_A Reverse gyrase; topoiso 87.5 1.5 5.1E-05 52.1 9.8 62 281-342 119-183 (1104)
170 1iqp_A RFCS; clamp loader, ext 87.5 2.3 8E-05 42.2 10.1 39 180-219 109-147 (327)
171 1oyw_A RECQ helicase, ATP-depe 87.4 1.9 6.5E-05 46.8 9.9 60 283-342 65-124 (523)
172 3hjh_A Transcription-repair-co 87.3 1.2 4E-05 47.9 8.0 51 62-123 13-63 (483)
173 2zan_A Vacuolar protein sortin 87.0 1.2 4.1E-05 47.3 7.8 51 25-79 130-183 (444)
174 2r6a_A DNAB helicase, replicat 86.9 1.3 4.3E-05 47.2 8.0 38 63-107 203-240 (454)
175 1w5s_A Origin recognition comp 86.9 1.1 3.8E-05 46.4 7.5 17 64-80 51-69 (412)
176 2w0m_A SSO2452; RECA, SSPF, un 86.6 0.77 2.6E-05 43.3 5.6 19 62-80 22-40 (235)
177 1sxj_C Activator 1 40 kDa subu 86.6 3.6 0.00012 41.6 11.0 39 180-219 109-147 (340)
178 2v1x_A ATP-dependent DNA helic 86.5 2 6.7E-05 47.5 9.5 60 283-342 84-145 (591)
179 1s2m_A Putative ATP-dependent 86.3 2.1 7.3E-05 44.0 9.2 71 99-187 258-332 (400)
180 4fcw_A Chaperone protein CLPB; 86.3 1.2 4.2E-05 44.1 7.1 17 64-80 48-64 (311)
181 3fht_A ATP-dependent RNA helic 86.1 1.7 5.8E-05 44.8 8.3 71 99-187 266-340 (412)
182 3pvs_A Replication-associated 86.0 0.99 3.4E-05 48.0 6.6 16 64-79 51-66 (447)
183 2d7d_A Uvrabc system protein B 85.1 6.6 0.00023 43.8 13.0 77 99-193 445-525 (661)
184 1xti_A Probable ATP-dependent 84.8 2 6.8E-05 43.9 8.1 74 99-190 250-327 (391)
185 2yjt_D ATP-dependent RNA helic 85.1 0.18 6.2E-06 45.9 0.0 71 99-187 30-104 (170)
186 1hv8_A Putative ATP-dependent 84.7 1.8 6.2E-05 43.6 7.6 72 99-188 238-313 (367)
187 3cf2_A TER ATPase, transitiona 84.1 5.4 0.00018 45.5 11.7 16 64-79 239-254 (806)
188 2j0s_A ATP-dependent RNA helic 83.6 2.5 8.4E-05 43.7 8.2 71 99-187 276-350 (410)
189 2db3_A ATP-dependent RNA helic 83.0 2.6 9E-05 44.3 8.2 69 101-187 302-374 (434)
190 2gno_A DNA polymerase III, gam 82.9 3.9 0.00013 41.0 9.0 39 180-219 81-119 (305)
191 1c4o_A DNA nucleotide excision 82.8 4.9 0.00017 44.9 10.7 77 99-193 439-519 (664)
192 4b4t_M 26S protease regulatory 82.6 0.34 1.2E-05 51.3 1.0 56 21-79 173-231 (434)
193 1yks_A Genome polyprotein [con 82.5 1.3 4.5E-05 46.9 5.6 69 99-186 177-245 (440)
194 1sxj_B Activator 1 37 kDa subu 82.3 6.2 0.00021 39.0 10.3 38 181-219 107-144 (323)
195 3m6a_A ATP-dependent protease 82.1 1.8 6E-05 47.3 6.5 18 62-79 107-124 (543)
196 1t6n_A Probable ATP-dependent 81.9 4.6 0.00016 37.6 8.7 56 284-342 83-143 (220)
197 3co5_A Putative two-component 81.6 1 3.6E-05 39.4 3.7 20 60-79 24-43 (143)
198 3n70_A Transport activator; si 81.3 1.1 3.7E-05 39.4 3.8 21 60-80 21-41 (145)
199 4a1f_A DNAB helicase, replicat 80.5 1.4 4.7E-05 45.1 4.6 49 62-119 45-93 (338)
200 2fna_A Conserved hypothetical 79.7 35 0.0012 33.7 15.1 37 182-219 138-177 (357)
201 2ehv_A Hypothetical protein PH 79.2 0.31 1.1E-05 46.8 -0.7 45 180-224 134-183 (251)
202 1qvr_A CLPB protein; coiled co 78.9 2.9 0.0001 48.2 7.3 16 64-79 192-207 (854)
203 1wp9_A ATP-dependent RNA helic 78.5 6.7 0.00023 40.8 9.5 95 72-190 340-446 (494)
204 2v6i_A RNA helicase; membrane, 78.1 2.9 0.0001 44.0 6.5 60 99-171 171-230 (431)
205 1r6b_X CLPA protein; AAA+, N-t 77.2 6.2 0.00021 44.7 9.3 18 63-80 207-224 (758)
206 1e9r_A Conjugal transfer prote 77.1 1.4 4.8E-05 46.4 3.6 45 61-113 51-95 (437)
207 2jlq_A Serine protease subunit 76.7 2.7 9.2E-05 44.6 5.7 69 99-186 188-256 (451)
208 2xau_A PRE-mRNA-splicing facto 76.5 8.3 0.00029 43.9 10.1 78 99-186 303-392 (773)
209 3ber_A Probable ATP-dependent 76.4 12 0.00039 35.9 9.8 56 283-342 111-170 (249)
210 2wv9_A Flavivirin protease NS2 75.8 2.7 9.2E-05 47.1 5.6 69 99-186 410-478 (673)
211 2oxc_A Probable ATP-dependent 74.0 8.3 0.00028 36.3 7.9 55 283-342 92-151 (230)
212 1ypw_A Transitional endoplasmi 73.5 5.5 0.00019 45.6 7.6 18 62-79 237-254 (806)
213 4b4t_L 26S protease subunit RP 73.2 0.65 2.2E-05 49.2 -0.3 56 21-79 173-231 (437)
214 3eiq_A Eukaryotic initiation f 72.6 2.3 7.8E-05 43.9 3.8 71 99-187 280-354 (414)
215 3fe2_A Probable ATP-dependent 71.8 10 0.00035 35.9 8.1 56 283-342 102-161 (242)
216 2whx_A Serine protease/ntpase/ 71.5 5.6 0.00019 44.0 6.8 69 99-186 355-423 (618)
217 2qgz_A Helicase loader, putati 71.0 6.1 0.00021 39.5 6.4 18 63-80 152-169 (308)
218 2qz4_A Paraplegin; AAA+, SPG7, 71.0 1.6 5.5E-05 42.0 2.0 52 25-79 2-55 (262)
219 1p9r_A General secretion pathw 70.7 3.2 0.00011 43.6 4.4 27 53-79 155-183 (418)
220 1ls1_A Signal recognition part 69.1 42 0.0014 33.0 12.1 18 63-80 98-115 (295)
221 1u0j_A DNA replication protein 68.7 8.9 0.0003 37.5 6.8 46 33-81 71-122 (267)
222 1vec_A ATP-dependent RNA helic 68.3 14 0.00047 33.7 7.9 56 283-342 71-131 (206)
223 1qvr_A CLPB protein; coiled co 68.0 6.4 0.00022 45.4 6.5 16 65-80 590-605 (854)
224 2pl3_A Probable ATP-dependent 67.5 11 0.00037 35.4 7.2 55 283-342 97-155 (236)
225 2z0m_A 337AA long hypothetical 67.3 10 0.00035 37.4 7.2 70 98-189 219-292 (337)
226 3e70_C DPA, signal recognition 67.2 32 0.0011 34.6 10.9 52 182-233 212-264 (328)
227 3nbx_X ATPase RAVA; AAA+ ATPas 67.2 6.4 0.00022 42.4 5.9 42 36-78 15-56 (500)
228 2i1q_A DNA repair and recombin 67.0 11 0.00038 37.6 7.5 30 56-85 86-120 (322)
229 2oap_1 GSPE-2, type II secreti 66.9 5.3 0.00018 43.1 5.2 39 38-78 236-275 (511)
230 4b4t_I 26S protease regulatory 66.9 1.6 5.3E-05 46.0 1.0 55 21-79 174-232 (437)
231 1lv7_A FTSH; alpha/beta domain 66.2 3.2 0.00011 40.0 3.0 53 24-79 7-61 (257)
232 2r44_A Uncharacterized protein 64.4 4.1 0.00014 40.8 3.6 24 56-79 39-62 (331)
233 4ag6_A VIRB4 ATPase, type IV s 64.1 5.1 0.00017 41.4 4.3 41 62-110 34-74 (392)
234 2bjv_A PSP operon transcriptio 63.7 4.7 0.00016 39.0 3.7 19 61-79 27-45 (265)
235 3nwn_A Kinesin-like protein KI 63.5 4.8 0.00016 41.3 3.8 25 56-80 96-122 (359)
236 3d8b_A Fidgetin-like protein 1 63.2 6.1 0.00021 40.3 4.6 18 63-80 117-134 (357)
237 2dr3_A UPF0273 protein PH0284; 63.0 7.3 0.00025 36.7 4.9 20 62-81 22-41 (247)
238 1ofh_A ATP-dependent HSL prote 62.8 12 0.00042 36.5 6.7 19 62-80 49-67 (310)
239 3p32_A Probable GTPase RV1496/ 62.8 95 0.0033 31.2 13.7 52 182-233 219-278 (355)
240 2x8a_A Nuclear valosin-contain 62.7 1.2 3.9E-05 44.1 -1.0 53 24-79 5-60 (274)
241 2zts_A Putative uncharacterize 62.7 4 0.00014 38.7 3.0 24 63-86 30-53 (251)
242 2z83_A Helicase/nucleoside tri 62.2 3.6 0.00012 43.7 2.7 54 99-160 190-243 (459)
243 1bg2_A Kinesin; motor protein, 62.0 5.5 0.00019 40.3 3.9 25 56-80 69-95 (325)
244 1w36_B RECB, exodeoxyribonucle 61.2 14 0.00047 44.3 7.8 62 62-124 16-81 (1180)
245 3iuy_A Probable ATP-dependent 61.2 21 0.00073 33.2 7.8 57 282-342 93-152 (228)
246 1qde_A EIF4A, translation init 61.1 9.4 0.00032 35.5 5.3 55 283-342 82-140 (224)
247 1gku_B Reverse gyrase, TOP-RG; 60.9 15 0.0005 43.5 7.9 59 282-342 98-164 (1054)
248 2oca_A DAR protein, ATP-depend 60.8 22 0.00076 37.7 8.8 75 100-191 348-426 (510)
249 3rc3_A ATP-dependent RNA helic 60.8 16 0.00054 40.9 7.7 74 101-193 322-401 (677)
250 3fmp_B ATP-dependent RNA helic 60.7 1.8 6.1E-05 46.1 0.0 70 99-186 333-406 (479)
251 2gxq_A Heat resistant RNA depe 60.7 21 0.0007 32.5 7.5 56 283-342 72-129 (207)
252 1tue_A Replication protein E1; 60.5 11 0.00036 35.6 5.3 44 35-80 28-75 (212)
253 2eyu_A Twitching motility prot 60.5 4.6 0.00016 39.4 3.0 20 60-79 22-41 (261)
254 1ixz_A ATP-dependent metallopr 60.5 1.8 6E-05 41.8 -0.1 53 22-79 9-65 (254)
255 3gk5_A Uncharacterized rhodane 60.4 9.8 0.00034 31.3 4.6 36 283-318 55-90 (108)
256 2ffh_A Protein (FFH); SRP54, s 60.3 36 0.0012 35.6 10.0 18 64-81 99-116 (425)
257 3hws_A ATP-dependent CLP prote 60.3 6.2 0.00021 40.2 4.1 19 62-80 50-68 (363)
258 4gl2_A Interferon-induced heli 60.3 6.5 0.00022 43.8 4.6 108 99-222 400-519 (699)
259 4etp_A Kinesin-like protein KA 60.2 6.2 0.00021 41.2 4.1 25 56-80 132-158 (403)
260 3u4q_B ATP-dependent helicase/ 60.2 7 0.00024 46.7 5.1 38 67-109 5-42 (1166)
261 3dc4_A Kinesin-like protein NO 60.1 5.4 0.00018 40.7 3.5 25 56-80 86-112 (344)
262 3g5j_A Putative ATP/GTP bindin 59.9 12 0.0004 31.7 5.2 36 284-319 90-126 (134)
263 3o8b_A HCV NS3 protease/helica 59.8 6.3 0.00022 43.9 4.2 66 99-186 396-461 (666)
264 2nr8_A Kinesin-like protein KI 59.6 6.1 0.00021 40.5 3.8 25 56-80 95-121 (358)
265 1v8k_A Kinesin-like protein KI 59.5 6 0.0002 41.3 3.8 25 56-80 146-172 (410)
266 3bor_A Human initiation factor 59.5 17 0.00058 34.3 6.8 57 283-342 98-158 (237)
267 4a14_A Kinesin, kinesin-like p 59.5 6.4 0.00022 40.1 3.9 25 56-80 75-101 (344)
268 2y65_A Kinesin, kinesin heavy 59.4 6.4 0.00022 40.5 3.9 25 56-80 76-102 (365)
269 2h58_A Kinesin-like protein KI 59.4 6.5 0.00022 39.9 3.9 26 55-80 71-98 (330)
270 2vvg_A Kinesin-2; motor protei 59.2 6.5 0.00022 40.2 3.9 25 56-80 81-107 (350)
271 1t5c_A CENP-E protein, centrom 59.2 6.3 0.00022 40.3 3.8 25 56-80 69-95 (349)
272 3b6u_A Kinesin-like protein KI 59.0 6.3 0.00022 40.6 3.8 25 56-80 93-119 (372)
273 3gbj_A KIF13B protein; kinesin 59.0 6.3 0.00022 40.4 3.8 25 56-80 84-110 (354)
274 2zfi_A Kinesin-like protein KI 58.9 6.5 0.00022 40.4 3.9 25 56-80 81-107 (366)
275 3tbk_A RIG-I helicase domain; 58.8 14 0.00049 39.3 6.9 56 283-342 52-111 (555)
276 1kgd_A CASK, peripheral plasma 58.7 5.2 0.00018 36.2 2.9 19 61-79 3-21 (180)
277 3a8t_A Adenylate isopentenyltr 58.7 4.8 0.00017 40.9 2.8 16 64-79 41-56 (339)
278 1goj_A Kinesin, kinesin heavy 58.6 6.4 0.00022 40.3 3.8 25 56-80 72-98 (355)
279 4a2q_A RIG-I, retinoic acid in 58.4 19 0.00067 40.8 8.2 56 283-342 296-355 (797)
280 3lre_A Kinesin-like protein KI 58.1 6.5 0.00022 40.3 3.7 25 56-80 97-123 (355)
281 3exa_A TRNA delta(2)-isopenten 58.1 4.2 0.00015 40.9 2.2 16 64-79 4-19 (322)
282 3t0q_A AGR253WP; kinesin, alph 57.8 5.8 0.0002 40.5 3.3 25 56-80 77-103 (349)
283 1x88_A Kinesin-like protein KI 57.8 6.3 0.00022 40.4 3.6 25 56-80 80-106 (359)
284 1z5z_A Helicase of the SNF2/RA 57.7 45 0.0015 32.4 9.7 95 71-190 92-192 (271)
285 3u06_A Protein claret segregat 57.7 6.3 0.00022 41.2 3.6 26 55-80 129-156 (412)
286 3cob_A Kinesin heavy chain-lik 57.4 5.8 0.0002 40.8 3.2 25 56-80 71-97 (369)
287 1wrb_A DJVLGB; RNA helicase, D 57.4 36 0.0012 32.1 8.9 55 284-342 101-159 (253)
288 3foz_A TRNA delta(2)-isopenten 57.2 4.5 0.00015 40.7 2.2 15 65-79 12-26 (316)
289 3h1t_A Type I site-specific re 57.2 23 0.00077 38.6 8.2 82 99-190 439-526 (590)
290 4a2p_A RIG-I, retinoic acid in 57.1 17 0.00059 38.8 7.2 56 283-342 55-114 (556)
291 1wv9_A Rhodanese homolog TT165 56.7 10 0.00034 30.2 4.0 35 284-318 54-88 (94)
292 2qmh_A HPR kinase/phosphorylas 56.6 4.8 0.00016 37.8 2.2 18 62-79 33-50 (205)
293 2heh_A KIF2C protein; kinesin, 56.5 7.1 0.00024 40.5 3.7 25 56-80 126-152 (387)
294 2gza_A Type IV secretion syste 56.1 7.1 0.00024 40.0 3.6 19 60-78 172-190 (361)
295 1iy2_A ATP-dependent metallopr 56.1 2.4 8.4E-05 41.5 0.1 52 24-79 35-89 (278)
296 1f9v_A Kinesin-like protein KA 56.0 5.9 0.0002 40.5 3.0 25 56-80 76-102 (347)
297 1vma_A Cell division protein F 56.0 44 0.0015 33.2 9.4 17 65-81 106-122 (306)
298 2wbe_C Bipolar kinesin KRP-130 56.0 6.8 0.00023 40.4 3.5 25 56-80 92-118 (373)
299 2j37_W Signal recognition part 55.9 40 0.0014 36.1 9.6 17 65-81 103-119 (504)
300 3vaa_A Shikimate kinase, SK; s 55.6 5.3 0.00018 36.8 2.4 19 62-80 24-42 (199)
301 3iev_A GTP-binding protein ERA 55.4 1.6E+02 0.0054 28.8 14.0 51 184-234 126-177 (308)
302 3trf_A Shikimate kinase, SK; a 55.2 5.4 0.00018 36.0 2.3 18 63-80 5-22 (185)
303 1um8_A ATP-dependent CLP prote 55.1 19 0.00064 36.7 6.7 18 63-80 72-89 (376)
304 1q0u_A Bstdead; DEAD protein, 55.1 11 0.00037 35.1 4.5 56 283-342 72-135 (219)
305 1ojl_A Transcriptional regulat 55.1 7.5 0.00026 38.7 3.5 18 62-79 24-41 (304)
306 3b9p_A CG5977-PA, isoform A; A 55.1 5 0.00017 39.4 2.2 52 24-79 16-70 (297)
307 3bh0_A DNAB-like replicative h 54.9 16 0.00056 36.4 6.1 49 63-120 68-116 (315)
308 2l82_A Designed protein OR32; 54.9 53 0.0018 27.0 7.8 52 286-337 5-56 (162)
309 3eme_A Rhodanese-like domain p 54.7 7.9 0.00027 31.5 3.0 36 283-318 56-91 (103)
310 2owm_A Nckin3-434, related to 54.6 8.3 0.00029 40.7 3.9 25 56-80 128-154 (443)
311 3foj_A Uncharacterized protein 54.5 8.9 0.00031 31.0 3.3 36 283-318 56-91 (100)
312 3uk6_A RUVB-like 2; hexameric 54.5 5 0.00017 40.7 2.2 17 64-80 71-87 (368)
313 3bfn_A Kinesin-like protein KI 54.0 7.2 0.00025 40.4 3.2 23 58-80 92-116 (388)
314 1lvg_A Guanylate kinase, GMP k 53.9 8.3 0.00028 35.6 3.4 18 62-79 3-20 (198)
315 3lw7_A Adenylate kinase relate 53.7 5.5 0.00019 35.1 2.1 16 65-80 3-18 (179)
316 3tau_A Guanylate kinase, GMP k 53.6 7.4 0.00025 36.2 3.0 18 62-79 7-24 (208)
317 2ewv_A Twitching motility prot 53.6 6.7 0.00023 40.4 3.0 19 61-79 134-152 (372)
318 1g8p_A Magnesium-chelatase 38 53.5 4.2 0.00014 40.9 1.4 17 63-79 45-61 (350)
319 3fmo_B ATP-dependent RNA helic 53.2 15 0.00052 36.3 5.5 51 285-342 164-219 (300)
320 3jvv_A Twitching mobility prot 52.4 7.4 0.00025 39.8 3.0 18 62-79 122-139 (356)
321 2pt7_A CAG-ALFA; ATPase, prote 52.3 6.3 0.00022 39.8 2.5 19 60-78 168-186 (330)
322 2va8_A SSO2462, SKI2-type heli 52.1 37 0.0013 37.9 9.1 79 99-187 252-362 (715)
323 3vkg_A Dynein heavy chain, cyt 52.1 12 0.00041 49.0 5.4 70 33-108 873-946 (3245)
324 2rep_A Kinesin-like protein KI 51.9 8.1 0.00028 39.9 3.2 25 56-80 107-133 (376)
325 2ze6_A Isopentenyl transferase 51.8 5.9 0.0002 38.3 2.1 14 66-79 4-17 (253)
326 3dkp_A Probable ATP-dependent 51.6 8.3 0.00028 36.6 3.1 57 283-342 98-158 (245)
327 3iij_A Coilin-interacting nucl 51.5 4.8 0.00017 36.2 1.3 19 62-80 10-28 (180)
328 2ius_A DNA translocase FTSK; n 51.1 17 0.0006 39.0 5.8 18 63-80 167-184 (512)
329 1qhx_A CPT, protein (chloramph 51.0 6.8 0.00023 35.0 2.3 18 63-80 3-20 (178)
330 1ex7_A Guanylate kinase; subst 50.7 8 0.00027 35.7 2.7 15 64-78 2-16 (186)
331 1fuu_A Yeast initiation factor 50.6 34 0.0012 34.4 7.8 56 282-342 88-147 (394)
332 2j41_A Guanylate kinase; GMP, 50.4 6.7 0.00023 35.9 2.2 18 62-79 5-22 (207)
333 2r2a_A Uncharacterized protein 50.4 10 0.00035 35.2 3.4 40 182-221 88-132 (199)
334 1hqc_A RUVB; extended AAA-ATPa 50.0 14 0.00049 36.4 4.7 16 64-79 39-54 (324)
335 1ry6_A Internal kinesin; kines 49.9 9.7 0.00033 39.0 3.4 19 62-80 82-102 (360)
336 1y63_A LMAJ004144AAA protein; 49.9 7.5 0.00026 35.3 2.4 19 62-80 9-27 (184)
337 3b85_A Phosphate starvation-in 49.7 13 0.00045 34.7 4.1 32 48-79 7-38 (208)
338 2zj8_A DNA helicase, putative 49.7 33 0.0011 38.3 8.2 81 99-190 237-346 (720)
339 3t15_A Ribulose bisphosphate c 49.1 6.6 0.00023 38.8 2.0 16 64-79 37-52 (293)
340 1j8m_F SRP54, signal recogniti 49.1 50 0.0017 32.6 8.5 18 65-82 100-117 (297)
341 3ney_A 55 kDa erythrocyte memb 48.9 9.4 0.00032 35.5 2.9 19 61-79 17-35 (197)
342 2xxa_A Signal recognition part 48.6 50 0.0017 34.6 8.8 19 65-83 102-120 (433)
343 1z6g_A Guanylate kinase; struc 48.6 12 0.0004 35.2 3.6 19 61-79 21-39 (218)
344 2qor_A Guanylate kinase; phosp 48.5 8.6 0.00029 35.5 2.6 20 60-79 9-28 (204)
345 2fsf_A Preprotein translocase 48.1 49 0.0017 37.7 9.0 56 281-342 113-172 (853)
346 1ly1_A Polynucleotide kinase; 48.0 7.7 0.00026 34.5 2.1 16 65-80 4-19 (181)
347 3hix_A ALR3790 protein; rhodan 48.0 23 0.00078 28.8 4.9 36 283-318 52-88 (106)
348 1kag_A SKI, shikimate kinase I 47.9 8.8 0.0003 34.0 2.5 17 63-79 4-20 (173)
349 3crm_A TRNA delta(2)-isopenten 47.9 9 0.00031 38.6 2.8 15 65-79 7-21 (323)
350 1rj9_A FTSY, signal recognitio 47.8 17 0.00059 36.1 4.9 26 63-90 102-127 (304)
351 1kht_A Adenylate kinase; phosp 47.7 8.1 0.00028 34.8 2.2 17 63-79 3-19 (192)
352 1zp6_A Hypothetical protein AT 47.6 6.9 0.00024 35.4 1.7 17 62-78 8-24 (191)
353 3tr0_A Guanylate kinase, GMP k 47.3 11 0.00037 34.5 3.0 18 62-79 6-23 (205)
354 2c9o_A RUVB-like 1; hexameric 47.2 7.7 0.00026 41.0 2.2 17 64-80 64-80 (456)
355 2fz4_A DNA repair protein RAD2 46.9 39 0.0013 32.0 7.1 47 283-342 133-180 (237)
356 3d3q_A TRNA delta(2)-isopenten 46.5 11 0.00038 38.3 3.2 15 65-79 9-23 (340)
357 3eph_A TRNA isopentenyltransfe 46.5 9.5 0.00032 39.8 2.7 14 66-79 5-18 (409)
358 1u94_A RECA protein, recombina 46.4 19 0.00065 36.7 5.0 37 63-107 63-99 (356)
359 2r8r_A Sensor protein; KDPD, P 46.3 19 0.00067 34.2 4.7 24 62-85 4-28 (228)
360 3kb2_A SPBC2 prophage-derived 46.3 8.6 0.00029 33.9 2.1 16 65-80 3-18 (173)
361 4f4c_A Multidrug resistance pr 46.2 77 0.0026 38.3 11.0 40 178-217 569-608 (1321)
362 3lda_A DNA repair protein RAD5 46.1 28 0.00095 36.1 6.3 24 26-49 84-107 (400)
363 3flh_A Uncharacterized protein 46.1 17 0.00057 30.7 3.9 36 283-318 71-108 (124)
364 4a2w_A RIG-I, retinoic acid in 45.3 28 0.00095 40.4 6.8 56 283-342 296-355 (936)
365 2p6r_A Afuhel308 helicase; pro 45.3 35 0.0012 38.1 7.4 79 99-187 242-346 (702)
366 3bgw_A DNAB-like replicative h 45.2 21 0.0007 37.7 5.2 37 63-107 197-233 (444)
367 3f9v_A Minichromosome maintena 45.2 9 0.00031 42.1 2.5 14 65-78 329-342 (595)
368 3iwh_A Rhodanese-like domain p 45.0 14 0.00047 30.3 3.0 35 283-317 56-90 (103)
369 2zr9_A Protein RECA, recombina 44.8 20 0.00069 36.4 4.9 44 56-107 48-97 (349)
370 1tf5_A Preprotein translocase 44.6 66 0.0022 36.7 9.3 55 281-341 122-180 (844)
371 2r2a_A Uncharacterized protein 44.6 13 0.00044 34.5 3.1 15 66-80 8-22 (199)
372 4eun_A Thermoresistant glucoki 44.4 10 0.00035 34.9 2.4 18 62-79 28-45 (200)
373 2fsx_A RV0390, COG0607: rhodan 44.1 21 0.0007 31.1 4.3 36 283-318 80-116 (148)
374 1f2t_A RAD50 ABC-ATPase; DNA d 44.1 14 0.00048 32.4 3.2 23 65-89 25-47 (149)
375 3dmq_A RNA polymerase-associat 44.0 14 0.00049 43.1 4.1 88 99-207 503-596 (968)
376 3kta_A Chromosome segregation 43.9 13 0.00045 33.2 3.0 23 65-89 28-50 (182)
377 1knq_A Gluconate kinase; ALFA/ 43.4 9.1 0.00031 34.1 1.8 19 62-80 7-25 (175)
378 1gmx_A GLPE protein; transfera 43.2 28 0.00095 28.3 4.7 37 282-318 57-94 (108)
379 4akg_A Glutathione S-transfera 43.2 24 0.00082 45.7 6.1 49 33-82 890-942 (2695)
380 1q57_A DNA primase/helicase; d 43.0 22 0.00075 38.0 5.1 50 62-119 241-290 (503)
381 3a00_A Guanylate kinase, GMP k 42.8 15 0.00051 33.3 3.2 16 64-79 2-17 (186)
382 1xp8_A RECA protein, recombina 42.8 23 0.00077 36.3 4.9 44 56-107 61-110 (366)
383 2r62_A Cell division protease 42.7 5.6 0.00019 38.4 0.2 17 64-80 45-61 (268)
384 2px0_A Flagellar biosynthesis 42.7 24 0.00083 34.8 5.0 20 63-82 105-124 (296)
385 1znw_A Guanylate kinase, GMP k 42.6 15 0.00053 33.8 3.3 21 59-79 16-36 (207)
386 3nwj_A ATSK2; P loop, shikimat 42.6 16 0.00055 35.3 3.5 22 59-80 44-65 (250)
387 1m7g_A Adenylylsulfate kinase; 42.6 15 0.0005 34.0 3.2 30 50-80 13-42 (211)
388 4gp7_A Metallophosphoesterase; 42.4 9.6 0.00033 34.1 1.8 19 62-80 8-26 (171)
389 2iut_A DNA translocase FTSK; n 42.3 29 0.00098 37.8 5.8 26 64-90 215-240 (574)
390 2hhg_A Hypothetical protein RP 42.2 18 0.0006 31.0 3.5 36 283-318 86-122 (139)
391 3fho_A ATP-dependent RNA helic 42.1 4 0.00014 43.9 -1.0 71 99-187 357-431 (508)
392 3cm0_A Adenylate kinase; ATP-b 41.8 8.4 0.00029 34.6 1.3 19 62-80 3-21 (186)
393 2fwr_A DNA repair protein RAD2 41.5 36 0.0012 35.6 6.4 47 283-342 133-180 (472)
394 3nhv_A BH2092 protein; alpha-b 41.4 18 0.0006 31.6 3.3 36 283-318 72-109 (144)
395 3mwy_W Chromo domain-containin 41.3 1.3E+02 0.0043 34.1 11.3 107 73-209 554-667 (800)
396 2cvh_A DNA repair and recombin 40.9 15 0.00052 33.8 3.0 20 63-82 20-39 (220)
397 4a74_A DNA repair and recombin 40.6 23 0.0008 32.7 4.3 19 62-80 24-42 (231)
398 2v9p_A Replication protein E1; 40.6 17 0.00058 36.3 3.4 26 62-89 125-150 (305)
399 3c8u_A Fructokinase; YP_612366 40.6 13 0.00044 34.4 2.4 17 62-78 21-37 (208)
400 1cr0_A DNA primase/helicase; R 40.6 28 0.00096 34.0 5.1 19 62-80 34-52 (296)
401 2chq_A Replication factor C sm 40.4 31 0.0011 33.6 5.4 42 25-79 13-54 (319)
402 3b9q_A Chloroplast SRP recepto 40.3 19 0.00063 35.9 3.7 26 63-90 100-125 (302)
403 1tq1_A AT5G66040, senescence-a 40.2 22 0.00077 30.1 3.8 36 283-318 82-118 (129)
404 4f4c_A Multidrug resistance pr 40.1 6.1 0.00021 47.9 0.0 40 179-218 1233-1272(1321)
405 3ly5_A ATP-dependent RNA helic 40.1 75 0.0026 30.3 8.1 56 283-342 126-185 (262)
406 3cf2_A TER ATPase, transitiona 39.8 4.3 0.00015 46.3 -1.2 53 24-79 472-527 (806)
407 2jtq_A Phage shock protein E; 39.7 67 0.0023 24.5 6.3 35 283-318 41-76 (85)
408 3t61_A Gluconokinase; PSI-biol 39.6 12 0.00042 34.2 2.1 17 64-80 19-35 (202)
409 1qxn_A SUD, sulfide dehydrogen 39.6 19 0.00064 31.0 3.2 36 283-318 82-118 (137)
410 1nij_A Hypothetical protein YJ 39.5 19 0.00066 35.9 3.7 13 66-78 7-19 (318)
411 2f1r_A Molybdopterin-guanine d 39.5 16 0.00055 33.0 2.8 15 65-79 4-18 (171)
412 4h1g_A Maltose binding protein 39.4 18 0.00061 40.7 3.7 26 55-80 453-480 (715)
413 2ipc_A Preprotein translocase 39.4 71 0.0024 36.8 8.5 55 281-341 118-176 (997)
414 3b6e_A Interferon-induced heli 39.2 21 0.00071 32.6 3.7 56 283-342 82-141 (216)
415 2rhm_A Putative kinase; P-loop 39.2 12 0.00042 33.6 2.0 18 63-80 5-22 (193)
416 1nkt_A Preprotein translocase 38.8 81 0.0028 36.2 8.9 54 282-341 151-208 (922)
417 2ykg_A Probable ATP-dependent 38.8 50 0.0017 36.5 7.4 55 284-342 62-120 (696)
418 3cmw_A Protein RECA, recombina 38.6 25 0.00086 43.4 5.1 100 56-195 1418-1523(1706)
419 2c95_A Adenylate kinase 1; tra 38.6 15 0.00051 33.1 2.5 20 61-80 7-26 (196)
420 1tev_A UMP-CMP kinase; ploop, 38.6 13 0.00045 33.4 2.1 18 63-80 3-20 (196)
421 2k0z_A Uncharacterized protein 38.3 31 0.0011 28.2 4.3 36 283-318 56-91 (110)
422 1s96_A Guanylate kinase, GMP k 38.1 14 0.00049 34.7 2.4 20 60-79 13-32 (219)
423 2i3b_A HCR-ntpase, human cance 38.1 22 0.00076 32.6 3.6 42 179-223 103-146 (189)
424 1ye8_A Protein THEP1, hypothet 38.1 19 0.00066 32.5 3.2 15 65-79 2-16 (178)
425 2cdn_A Adenylate kinase; phosp 37.8 10 0.00035 34.7 1.2 17 64-80 21-37 (201)
426 3zyw_A Glutaredoxin-3; metal b 37.6 1.3E+02 0.0044 24.6 8.0 60 280-339 12-77 (111)
427 3ilm_A ALR3790 protein; rhodan 37.5 25 0.00085 30.4 3.7 36 283-318 56-92 (141)
428 3fb4_A Adenylate kinase; psych 37.5 14 0.00047 34.2 2.1 16 65-80 2-17 (216)
429 3uie_A Adenylyl-sulfate kinase 37.0 13 0.00045 34.0 1.9 19 62-80 24-42 (200)
430 2v54_A DTMP kinase, thymidylat 37.0 16 0.00053 33.3 2.4 18 62-79 3-20 (204)
431 2bdt_A BH3686; alpha-beta prot 37.0 14 0.00049 33.2 2.1 16 64-79 3-18 (189)
432 1n0w_A DNA repair protein RAD5 37.0 21 0.00071 33.4 3.3 21 62-82 23-43 (243)
433 2bwj_A Adenylate kinase 5; pho 36.8 15 0.0005 33.3 2.1 19 62-80 11-29 (199)
434 1qf9_A UMP/CMP kinase, protein 36.8 14 0.00049 33.1 2.0 16 65-80 8-23 (194)
435 3lnc_A Guanylate kinase, GMP k 36.7 15 0.0005 34.6 2.1 18 62-79 26-43 (231)
436 3asz_A Uridine kinase; cytidin 36.6 19 0.00066 33.0 3.0 18 62-79 5-22 (211)
437 3h11_B Caspase-8; cell death, 36.6 74 0.0025 30.9 7.3 49 282-331 16-85 (271)
438 1e6c_A Shikimate kinase; phosp 36.5 15 0.00051 32.4 2.1 17 64-80 3-19 (173)
439 1nks_A Adenylate kinase; therm 36.2 14 0.00049 33.0 2.0 16 65-80 3-18 (194)
440 3qf7_A RAD50; ABC-ATPase, ATPa 36.1 14 0.00049 37.8 2.1 16 65-80 25-40 (365)
441 2pez_A Bifunctional 3'-phospho 35.9 14 0.00049 33.0 1.9 18 62-79 4-21 (179)
442 3auy_A DNA double-strand break 35.8 19 0.00066 36.7 3.1 22 66-89 28-49 (371)
443 1via_A Shikimate kinase; struc 35.8 17 0.00057 32.4 2.3 17 64-80 5-21 (175)
444 3dl0_A Adenylate kinase; phosp 35.8 15 0.00052 33.9 2.1 16 65-80 2-17 (216)
445 1zd8_A GTP:AMP phosphotransfer 35.7 15 0.0005 34.4 2.0 18 63-80 7-24 (227)
446 3ipz_A Monothiol glutaredoxin- 35.6 1.4E+02 0.0049 24.1 8.0 59 281-339 15-79 (109)
447 2yan_A Glutaredoxin-3; oxidore 35.6 1.3E+02 0.0044 24.0 7.7 56 283-338 16-77 (105)
448 1zuh_A Shikimate kinase; alpha 35.5 16 0.00055 32.2 2.1 17 64-80 8-24 (168)
449 2iyv_A Shikimate kinase, SK; t 35.4 18 0.00062 32.3 2.5 17 64-80 3-19 (184)
450 1gvn_B Zeta; postsegregational 35.0 13 0.00045 36.6 1.5 16 64-79 34-49 (287)
451 1g41_A Heat shock protein HSLU 34.9 16 0.00056 38.5 2.3 18 63-80 50-67 (444)
452 1aky_A Adenylate kinase; ATP:A 34.9 18 0.0006 33.7 2.4 18 63-80 4-21 (220)
453 1xjc_A MOBB protein homolog; s 34.9 31 0.0011 31.1 3.9 15 65-79 6-20 (169)
454 1z63_A Helicase of the SNF2/RA 34.8 1.2E+02 0.004 31.8 9.2 107 72-207 322-434 (500)
455 1v5w_A DMC1, meiotic recombina 34.5 27 0.00093 35.2 3.9 43 64-108 123-165 (343)
456 1in4_A RUVB, holliday junction 34.5 21 0.00072 35.8 3.1 16 64-79 52-67 (334)
457 3pxg_A Negative regulator of g 34.5 20 0.00068 38.0 3.0 17 64-80 202-218 (468)
458 2og2_A Putative signal recogni 34.4 25 0.00086 35.9 3.6 25 64-90 158-182 (359)
459 3hr8_A Protein RECA; alpha and 34.3 34 0.0011 34.9 4.5 45 56-108 48-98 (356)
460 1ukz_A Uridylate kinase; trans 34.2 17 0.00058 33.2 2.1 17 64-80 16-32 (203)
461 3k1j_A LON protease, ATP-depen 34.2 25 0.00087 38.5 3.9 24 56-79 53-76 (604)
462 1zak_A Adenylate kinase; ATP:A 34.1 19 0.00065 33.5 2.5 18 63-80 5-22 (222)
463 3qks_A DNA double-strand break 33.8 24 0.00083 32.6 3.2 24 65-90 25-48 (203)
464 3p45_A Caspase-6; protease, hu 33.7 1.4E+02 0.0047 27.1 8.1 49 282-331 43-105 (179)
465 2pt5_A Shikimate kinase, SK; a 33.7 17 0.0006 31.8 2.1 16 65-80 2-17 (168)
466 1z3i_X Similar to RAD54-like; 33.5 1.6E+02 0.0055 32.3 10.4 108 72-208 396-510 (644)
467 4dzz_A Plasmid partitioning pr 33.2 1.9E+02 0.0066 25.6 9.4 18 68-85 7-24 (206)
468 2yvu_A Probable adenylyl-sulfa 33.1 17 0.00057 32.7 1.9 19 62-80 12-30 (186)
469 2plr_A DTMP kinase, probable t 33.0 17 0.00057 33.2 1.9 19 62-80 3-21 (213)
470 2ce7_A Cell division protein F 32.8 17 0.00058 38.7 2.1 53 24-79 11-65 (476)
471 2if2_A Dephospho-COA kinase; a 32.8 18 0.00061 33.0 2.0 15 65-79 3-17 (204)
472 1ak2_A Adenylate kinase isoenz 32.7 23 0.00079 33.3 2.9 19 62-80 15-33 (233)
473 3d1p_A Putative thiosulfate su 32.5 28 0.00095 29.8 3.1 36 283-318 91-127 (139)
474 2wwf_A Thymidilate kinase, put 32.4 20 0.00067 32.8 2.3 19 62-80 9-27 (212)
475 1nlf_A Regulatory protein REPA 32.3 24 0.0008 34.3 2.9 23 60-82 27-49 (279)
476 3cmu_A Protein RECA, recombina 32.3 37 0.0013 42.7 5.1 44 57-108 1415-1464(2050)
477 1cke_A CK, MSSA, protein (cyti 32.3 23 0.0008 32.8 2.8 17 64-80 6-22 (227)
478 1nn5_A Similar to deoxythymidy 32.2 20 0.00069 32.8 2.3 19 62-80 8-26 (215)
479 4akg_A Glutathione S-transfera 32.1 18 0.0006 46.9 2.4 20 60-79 1264-1283(2695)
480 1np6_A Molybdopterin-guanine d 32.0 29 0.00098 31.4 3.2 14 65-78 8-21 (174)
481 1sxj_A Activator 1 95 kDa subu 31.9 22 0.00074 38.2 2.8 40 181-222 148-189 (516)
482 2qt1_A Nicotinamide riboside k 31.9 24 0.00081 32.3 2.7 19 61-79 19-37 (207)
483 3h11_A CAsp8 and FADD-like apo 31.8 39 0.0013 33.0 4.3 49 282-331 42-90 (272)
484 2jaq_A Deoxyguanosine kinase; 31.7 19 0.00066 32.5 2.1 15 65-79 2-16 (205)
485 2pbr_A DTMP kinase, thymidylat 31.4 20 0.00068 32.1 2.1 15 66-80 3-17 (195)
486 3a4m_A L-seryl-tRNA(SEC) kinas 31.4 19 0.00066 34.6 2.1 16 64-79 5-20 (260)
487 3tnl_A Shikimate dehydrogenase 31.3 3.2E+02 0.011 26.9 11.2 48 61-121 152-203 (315)
488 2z0h_A DTMP kinase, thymidylat 31.1 20 0.0007 32.2 2.1 15 66-80 3-17 (197)
489 1htw_A HI0065; nucleotide-bind 31.1 28 0.00096 30.8 3.0 26 62-89 32-57 (158)
490 1jjv_A Dephospho-COA kinase; P 31.1 20 0.00069 32.7 2.1 14 66-79 5-18 (206)
491 2vli_A Antibiotic resistance p 30.9 16 0.00056 32.5 1.4 19 62-80 4-22 (183)
492 1e4v_A Adenylate kinase; trans 30.7 20 0.00069 33.1 2.0 16 65-80 2-17 (214)
493 1zu4_A FTSY; GTPase, signal re 30.6 43 0.0015 33.4 4.6 17 65-81 107-123 (320)
494 2yhs_A FTSY, cell division pro 30.5 32 0.0011 36.8 3.7 25 64-90 294-318 (503)
495 1qtn_A Caspase-8; apoptosis, d 30.2 1.5E+02 0.0051 26.3 7.7 48 283-331 23-91 (164)
496 1c9k_A COBU, adenosylcobinamid 30.0 32 0.0011 31.3 3.2 13 66-78 2-14 (180)
497 3io5_A Recombination and repai 29.9 55 0.0019 32.9 5.1 41 65-111 30-70 (333)
498 3tif_A Uncharacterized ABC tra 29.7 24 0.00082 33.5 2.4 17 62-78 30-46 (235)
499 3pxi_A Negative regulator of g 29.7 28 0.00094 39.3 3.3 27 54-80 190-218 (758)
500 1wik_A Thioredoxin-like protei 29.1 1.9E+02 0.0066 23.1 7.8 56 283-338 14-75 (109)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=3.3e-63 Score=538.56 Aligned_cols=368 Identities=29% Similarity=0.441 Sum_probs=331.6
Q ss_pred hhcccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCe
Q 007402 22 AEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPA 101 (605)
Q Consensus 22 ~~~~~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~ 101 (605)
+.+..+|++++|++.++++|.++||.+|||+|.++||.+++|+|++++|+||||||+||++|+++.++.........+++
T Consensus 52 p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~ 131 (434)
T 2db3_A 52 PQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQ 131 (434)
T ss_dssp CCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCS
T ss_pred CCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCcc
Confidence 34567899999999999999999999999999999999999999999999999999999999999998754333345789
Q ss_pred EEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCC
Q 007402 102 ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS 181 (605)
Q Consensus 102 ~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~ 181 (605)
+|||+||+||+.|+++++.++.... .+++..++|+.+...+...+..+++|+|+||++|.+++..+. ..+.+
T Consensus 132 ~lil~PtreLa~Q~~~~~~~~~~~~----~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~----~~l~~ 203 (434)
T 2db3_A 132 VVIVSPTRELAIQIFNEARKFAFES----YLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTF----ITFED 203 (434)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTS----SCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTS----CCCTT
T ss_pred EEEEecCHHHHHHHHHHHHHHhccC----CcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCC----ccccc
Confidence 9999999999999999999886543 577888999999888888888899999999999999998764 66889
Q ss_pred ceEEEEeCcchhccCCcHHHHHHHHhhC--CCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEE
Q 007402 182 LKILVLDEADLLLSYGYEDDLKALSAVI--PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 259 (605)
Q Consensus 182 l~~lViDEad~i~~~g~~~~l~~i~~~l--p~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q 259 (605)
+++|||||||+|+++||...+..++..+ +...|+++||||+++.+..+...++.+|..+.+.. ......++.|
T Consensus 204 ~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~-----~~~~~~~i~~ 278 (434)
T 2db3_A 204 TRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGI-----VGGACSDVKQ 278 (434)
T ss_dssp CCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESS-----TTCCCTTEEE
T ss_pred CCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEecc-----ccccccccce
Confidence 9999999999999999999999999875 67899999999999999999999999999988765 3344567899
Q ss_pred EEEEccccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEE
Q 007402 260 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIA 339 (605)
Q Consensus 260 ~~~~~~~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIa 339 (605)
.+..+...+|...+..++.... .++||||+++..|..++.+|...|+.+..+||++++.+|..+++.|++|..+||||
T Consensus 279 ~~~~~~~~~k~~~l~~~l~~~~--~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLva 356 (434)
T 2db3_A 279 TIYEVNKYAKRSKLIEILSEQA--DGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIA 356 (434)
T ss_dssp EEEECCGGGHHHHHHHHHHHCC--TTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEE
T ss_pred EEEEeCcHHHHHHHHHHHHhCC--CCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEE
Confidence 9999999999999988887643 45999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCccEEEE
Q 007402 340 TDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSL 419 (605)
Q Consensus 340 Td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~~ 419 (605)
|++++ ||||+++|++|||||+|.++.+|+||+|||||+|+.|.|++|
T Consensus 357 T~v~~---------------------------------rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~ 403 (434)
T 2db3_A 357 TSVAS---------------------------------RGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSF 403 (434)
T ss_dssp CGGGT---------------------------------SSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEE
T ss_pred chhhh---------------------------------CCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEE
Confidence 99976 899999999999999999999999999999999999999999
Q ss_pred eCCc-hhhHHHHHHHHHhh
Q 007402 420 VSPD-EMKIFEEIKSFVGD 437 (605)
Q Consensus 420 v~~~-e~~~~~~~~~~l~~ 437 (605)
+++. +......+.+++..
T Consensus 404 ~~~~~~~~~~~~l~~~l~~ 422 (434)
T 2db3_A 404 FDPEKDRAIAADLVKILEG 422 (434)
T ss_dssp ECTTTCGGGHHHHHHHHHH
T ss_pred EeccccHHHHHHHHHHHHH
Confidence 9965 55666666666654
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.8e-59 Score=504.75 Aligned_cols=371 Identities=29% Similarity=0.446 Sum_probs=328.8
Q ss_pred hhhcccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCC------
Q 007402 21 EAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSP------ 94 (605)
Q Consensus 21 ~~~~~~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~------ 94 (605)
.+.+..+|++++|++.++++|..+||..|||+|.++||.++.|+|+++.||||||||++|++|+++.+......
T Consensus 10 ~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~ 89 (417)
T 2i4i_A 10 CPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAM 89 (417)
T ss_dssp CCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred CCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhcc
Confidence 34556789999999999999999999999999999999999999999999999999999999999998764321
Q ss_pred -------CCCCCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHH
Q 007402 95 -------KSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKC 167 (605)
Q Consensus 95 -------~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~ 167 (605)
....++++||++||++|+.|+++.+..+.... ++++..+.|+.+...+...+..+++|+|+||+++.++
T Consensus 90 ~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~ 165 (417)
T 2i4i_A 90 KENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRS----RVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDM 165 (417)
T ss_dssp HHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTS----SCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHH
T ss_pred ccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcC----CceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHH
Confidence 01234789999999999999999999886543 6788889999988888888888899999999999999
Q ss_pred HhcCCCCCcccCCCceEEEEeCcchhccCCcHHHHHHHHhh--CCC--CceEEEEeeecChhHHHHHHHhcCCCeEEEcC
Q 007402 168 LSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV--IPR--GCQCLLMSATSSSDVDKLKKLILHNPYILTLP 243 (605)
Q Consensus 168 l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~~~l~~i~~~--lp~--~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~ 243 (605)
+..+. ..+.++++|||||||++++++|...+..++.. ++. ..|+++||||+++.+..+...++.+|..+...
T Consensus 166 l~~~~----~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 241 (417)
T 2i4i_A 166 MERGK----IGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVG 241 (417)
T ss_dssp HHTTS----BCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC
T ss_pred HHcCC----cChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeC
Confidence 98764 56788999999999999999999999999884 443 68999999999999999999999999888775
Q ss_pred CccCccccccCCCcEEEEEEccccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHH
Q 007402 244 EVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 323 (605)
Q Consensus 244 ~~~~~~~~~~~~~l~q~~~~~~~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~ 323 (605)
. ......++.+.++.+...++...+..+++.....+++||||++++.++.++.+|...|+.+..+||+++..+|.
T Consensus 242 ~-----~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~ 316 (417)
T 2i4i_A 242 R-----VGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDRE 316 (417)
T ss_dssp ---------CCSSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHH
T ss_pred C-----CCCCccCceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHH
Confidence 5 33455678899999999999999999998766678999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHh
Q 007402 324 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHR 403 (605)
Q Consensus 324 ~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqR 403 (605)
.++++|++|..+|||||+.++ +|||+|++++||+||+|.+..+|+||
T Consensus 317 ~~~~~f~~g~~~vlvaT~~~~---------------------------------~Gidip~v~~Vi~~~~p~s~~~~~Qr 363 (417)
T 2i4i_A 317 EALHQFRSGKSPILVATAVAA---------------------------------RGLDISNVKHVINFDLPSDIEEYVHR 363 (417)
T ss_dssp HHHHHHHHTSSCEEEECHHHH---------------------------------TTSCCCCEEEEEESSCCSSHHHHHHH
T ss_pred HHHHHHHcCCCCEEEECChhh---------------------------------cCCCcccCCEEEEEcCCCCHHHHHHh
Confidence 999999999999999999865 89999999999999999999999999
Q ss_pred hcccccCCCCccEEEEeCCchhhHHHHHHHHHhh
Q 007402 404 IGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 437 (605)
Q Consensus 404 iGRtgR~g~~G~ai~~v~~~e~~~~~~~~~~l~~ 437 (605)
+||+||.|+.|.|++|+++.+...+..+.+.+..
T Consensus 364 ~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~ 397 (417)
T 2i4i_A 364 IGRTGRVGNLGLATSFFNERNINITKDLLDLLVE 397 (417)
T ss_dssp HTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHH
T ss_pred cCccccCCCCceEEEEEccccHHHHHHHHHHHHH
Confidence 9999999999999999999998888777776654
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=9.5e-59 Score=498.61 Aligned_cols=365 Identities=27% Similarity=0.473 Sum_probs=325.4
Q ss_pred hhhcccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCC
Q 007402 21 EAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAP 100 (605)
Q Consensus 21 ~~~~~~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~ 100 (605)
..+...+|++++|++.++++|..+||.+|+|+|.++|+.+++|+|+++.||||||||++|++|+++.+... ..+.
T Consensus 32 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-----~~~~ 106 (410)
T 2j0s_A 32 EVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ-----VRET 106 (410)
T ss_dssp TCCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT-----SCSC
T ss_pred CccCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc-----cCCc
Confidence 34456789999999999999999999999999999999999999999999999999999999999876532 3467
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCC
Q 007402 101 AALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD 180 (605)
Q Consensus 101 ~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~ 180 (605)
++||++||++|+.|+++.+..+.... .+.+..+.|+.....+...+..+++|+|+||+++.+++..+. ..+.
T Consensus 107 ~~lil~Pt~~L~~q~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~----~~~~ 178 (410)
T 2j0s_A 107 QALILAPTRELAVQIQKGLLALGDYM----NVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRS----LRTR 178 (410)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTT----TCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTS----SCCT
T ss_pred eEEEEcCcHHHHHHHHHHHHHHhccC----CeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCC----ccHh
Confidence 89999999999999999999876544 678888899988887777777789999999999999998764 5678
Q ss_pred CceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEE
Q 007402 181 SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF 260 (605)
Q Consensus 181 ~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~ 260 (605)
.+++|||||||.+++++|...+..++..++...|+++||||+++.+..+...++.+|..+.+.. ......++.++
T Consensus 179 ~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 253 (410)
T 2j0s_A 179 AIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKR-----DELTLEGIKQF 253 (410)
T ss_dssp TCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCG-----GGCSCTTEEEE
T ss_pred heeEEEEccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecC-----ccccCCCceEE
Confidence 8999999999999999999999999999999999999999999999888888999998887654 34455678888
Q ss_pred EEEccccc-hHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEE
Q 007402 261 WISCSERD-KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIA 339 (605)
Q Consensus 261 ~~~~~~~~-k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIa 339 (605)
+..+...+ +...+..++... ..+++||||+++..++.++..|...|+.+..+||++++.+|..+++.|++|..+||||
T Consensus 254 ~~~~~~~~~k~~~l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~ 332 (410)
T 2j0s_A 254 FVAVEREEWKFDTLCDLYDTL-TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLIS 332 (410)
T ss_dssp EEEESSTTHHHHHHHHHHHHH-TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEE
T ss_pred EEEeCcHHhHHHHHHHHHHhc-CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEE
Confidence 88877555 777777777654 3679999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCccEEEE
Q 007402 340 TDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSL 419 (605)
Q Consensus 340 Td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~~ 419 (605)
|+.++ +|||+|++++||+||+|++...|+||+||+||.|+.|.+++|
T Consensus 333 T~~~~---------------------------------~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~ 379 (410)
T 2j0s_A 333 TDVWA---------------------------------RGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINF 379 (410)
T ss_dssp CGGGS---------------------------------SSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEE
T ss_pred CChhh---------------------------------CcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEE
Confidence 99976 899999999999999999999999999999999999999999
Q ss_pred eCCchhhHHHHHHHHHhh
Q 007402 420 VSPDEMKIFEEIKSFVGD 437 (605)
Q Consensus 420 v~~~e~~~~~~~~~~l~~ 437 (605)
+.+.+...+..+++++..
T Consensus 380 ~~~~~~~~~~~i~~~~~~ 397 (410)
T 2j0s_A 380 VKNDDIRILRDIEQYYST 397 (410)
T ss_dssp EEGGGHHHHHHHHHHTTC
T ss_pred ecHHHHHHHHHHHHHhCC
Confidence 999888777766665543
No 4
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=5e-56 Score=475.62 Aligned_cols=361 Identities=31% Similarity=0.471 Sum_probs=321.2
Q ss_pred hcccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeE
Q 007402 23 EEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAA 102 (605)
Q Consensus 23 ~~~~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~ 102 (605)
....+|++++|++.++++|.++||.+|+|+|.++|+.+++|+++++.||||||||++|++|+++.+... ..+.++
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~-----~~~~~~ 92 (400)
T 1s2m_A 18 TKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK-----LNKIQA 92 (400)
T ss_dssp ---CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT-----SCSCCE
T ss_pred cccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc-----cCCccE
Confidence 345789999999999999999999999999999999999999999999999999999999999987542 246689
Q ss_pred EEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCc
Q 007402 103 LVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSL 182 (605)
Q Consensus 103 LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l 182 (605)
||++||++|+.|+++.+..+...+ ++.+..+.|+.....+...+...++|+|+||+++.+++.... ..+.++
T Consensus 93 lil~P~~~L~~q~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~----~~~~~~ 164 (400)
T 1s2m_A 93 LIMVPTRELALQTSQVVRTLGKHC----GISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKV----ADLSDC 164 (400)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTT----TCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTC----SCCTTC
T ss_pred EEEcCCHHHHHHHHHHHHHHhccc----CceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCC----cccccC
Confidence 999999999999999999886544 577888889888777767777889999999999999988764 567889
Q ss_pred eEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEEEE
Q 007402 183 KILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWI 262 (605)
Q Consensus 183 ~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~ 262 (605)
++|||||||++.+.+|...+..++..++...|+++||||++..+..+...++.+|..+.+.. .....++.+++.
T Consensus 165 ~~vIiDEaH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 238 (400)
T 1s2m_A 165 SLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLME------ELTLKGITQYYA 238 (400)
T ss_dssp CEEEEESHHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCS------SCBCTTEEEEEE
T ss_pred CEEEEeCchHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEecc------ccccCCceeEEE
Confidence 99999999999988899999999999999999999999999999888888899888776543 234557888999
Q ss_pred EccccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 007402 263 SCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 342 (605)
Q Consensus 263 ~~~~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~ 342 (605)
.+....+...+..++... ..+++||||++++.+..++..|...|+.+..+||+|+..+|..+++.|++|..+|||||+.
T Consensus 239 ~~~~~~k~~~l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~ 317 (400)
T 1s2m_A 239 FVEERQKLHCLNTLFSKL-QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDL 317 (400)
T ss_dssp ECCGGGHHHHHHHHHHHS-CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSC
T ss_pred EechhhHHHHHHHHHhhc-CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCc
Confidence 898888888888887753 4679999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCccEEEEeCC
Q 007402 343 TQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSP 422 (605)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~~v~~ 422 (605)
++ +|+|+|++++||+||+|.|+.+|+||+||+||.|+.|.|++|+++
T Consensus 318 ~~---------------------------------~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~ 364 (400)
T 1s2m_A 318 LT---------------------------------RGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINW 364 (400)
T ss_dssp SS---------------------------------SSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECG
T ss_pred cc---------------------------------cCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEecc
Confidence 76 799999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHh
Q 007402 423 DEMKIFEEIKSFVG 436 (605)
Q Consensus 423 ~e~~~~~~~~~~l~ 436 (605)
.+...+..+++.+.
T Consensus 365 ~~~~~~~~i~~~~~ 378 (400)
T 1s2m_A 365 NDRFNLYKIEQELG 378 (400)
T ss_dssp GGHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHhC
Confidence 88866666555443
No 5
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=5.5e-57 Score=484.69 Aligned_cols=363 Identities=31% Similarity=0.472 Sum_probs=308.2
Q ss_pred hcccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeE
Q 007402 23 EEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAA 102 (605)
Q Consensus 23 ~~~~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~ 102 (605)
+...+|++++|++.++++|.++||..|+++|.++|+.+++|+|+++.||||||||++|++|+++.+... ..+.++
T Consensus 37 ~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-----~~~~~~ 111 (414)
T 3eiq_A 37 EIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD-----LKATQA 111 (414)
T ss_dssp CCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTT-----SCSCCE
T ss_pred chhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhc-----CCceeE
Confidence 335789999999999999999999999999999999999999999999999999999999999987652 346789
Q ss_pred EEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHc-CCCcEEEECCchHHHHHhcCCCCCcccCCC
Q 007402 103 LVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALA-GPPDIVIATPGCMPKCLSTGVLQSKSFSDS 181 (605)
Q Consensus 103 LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~-~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~ 181 (605)
||++||++|+.|+++.+..+.... ++.+..+.|+.....+...+. ..++|+|+||+++.+++..+. ..+..
T Consensus 112 lil~P~~~L~~q~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~----~~~~~ 183 (414)
T 3eiq_A 112 LVLAPTRELAQQIQKVVMALGDYM----GASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRY----LSPKY 183 (414)
T ss_dssp EEECSSHHHHHHHHHHHHHHGGGS----CCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTS----SCSTT
T ss_pred EEEeChHHHHHHHHHHHHHHhccc----CceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCC----ccccc
Confidence 999999999999999999987554 567777888887766655554 789999999999999998764 56778
Q ss_pred ceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEEE
Q 007402 182 LKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW 261 (605)
Q Consensus 182 l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~ 261 (605)
+++|||||||++.+++|...+..++..++...|+++||||+++.+..+...++.+|..+.... .......+.+++
T Consensus 184 ~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 258 (414)
T 3eiq_A 184 IKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKK-----EELTLEGIRQFY 258 (414)
T ss_dssp CCEEEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCC-----CCCCTTSCCEEE
T ss_pred CcEEEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecC-----CccCCCCceEEE
Confidence 999999999999999999999999999999999999999999999999999999998887655 444556788888
Q ss_pred EEccccc-hHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEc
Q 007402 262 ISCSERD-KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIAT 340 (605)
Q Consensus 262 ~~~~~~~-k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaT 340 (605)
+.+...+ +...+..++... ..+++||||++++.+..++..|...++.+..+||+|+..+|..+++.|++|..+|||||
T Consensus 259 ~~~~~~~~~~~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T 337 (414)
T 3eiq_A 259 INVEREEWKLDTLCDLYETL-TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITT 337 (414)
T ss_dssp EECSSSTTHHHHHHHHHHSS-CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEEC
T ss_pred EEeChHHhHHHHHHHHHHhC-CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEEC
Confidence 8776554 777777777654 46799999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCccEEEEe
Q 007402 341 DDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLV 420 (605)
Q Consensus 341 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~~v 420 (605)
+.++ +|||+|++++||+||+|.+..+|+||+||+||.|+.|.|++|+
T Consensus 338 ~~~~---------------------------------~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~ 384 (414)
T 3eiq_A 338 DLLA---------------------------------RGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMV 384 (414)
T ss_dssp SSCC-----------------------------------CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEE
T ss_pred Cccc---------------------------------cCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEE
Confidence 9977 7999999999999999999999999999999999999999999
Q ss_pred CCchhhHHHHHHHHHhh
Q 007402 421 SPDEMKIFEEIKSFVGD 437 (605)
Q Consensus 421 ~~~e~~~~~~~~~~l~~ 437 (605)
++.+...+..+++++..
T Consensus 385 ~~~~~~~~~~~~~~~~~ 401 (414)
T 3eiq_A 385 TEEDKRTLRDIETFYNT 401 (414)
T ss_dssp CSTHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHcC
Confidence 99988777766666543
No 6
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.7e-55 Score=469.48 Aligned_cols=351 Identities=24% Similarity=0.404 Sum_probs=313.0
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEE
Q 007402 25 EKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALV 104 (605)
Q Consensus 25 ~~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~Li 104 (605)
..+|++|+|++.++++|.++||.+|+|+|.++|+.+++|+|+++.||||+|||++|++|+++.+... ..+.++||
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-----~~~~~~li 81 (391)
T 1xti_A 7 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-----TGQVSVLV 81 (391)
T ss_dssp --CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC-----TTCCCEEE
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc-----CCCeeEEE
Confidence 3579999999999999999999999999999999999999999999999999999999999887542 33668999
Q ss_pred EcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHc-CCCcEEEECCchHHHHHhcCCCCCcccCCCce
Q 007402 105 LVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALA-GPPDIVIATPGCMPKCLSTGVLQSKSFSDSLK 183 (605)
Q Consensus 105 lvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~-~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~ 183 (605)
+|||++|+.|+++.+..+...+. ++++..+.|+.+...+...+. ..++|+|+||+++..++.... ..+.+++
T Consensus 82 l~P~~~L~~q~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~----~~~~~~~ 154 (391)
T 1xti_A 82 MCHTRELAFQISKEYERFSKYMP---NVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKS----LNLKHIK 154 (391)
T ss_dssp ECSCHHHHHHHHHHHHHHTTTCT---TCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTS----SCCTTCS
T ss_pred ECCCHHHHHHHHHHHHHHHhhCC---CeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCC----ccccccC
Confidence 99999999999999998865543 578888899888766655554 458999999999999988764 5678899
Q ss_pred EEEEeCcchhccC-CcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEEEE
Q 007402 184 ILVLDEADLLLSY-GYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWI 262 (605)
Q Consensus 184 ~lViDEad~i~~~-g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~ 262 (605)
+|||||||++.++ ++...+..++..++...|+++||||+++.+..+...++.+|..+.+... .......+.+++.
T Consensus 155 ~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 230 (391)
T 1xti_A 155 HFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDE----TKLTLHGLQQYYV 230 (391)
T ss_dssp EEEECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCC----CCCCCTTCEEEEE
T ss_pred EEEEeCHHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCc----cccCcccceEEEE
Confidence 9999999999884 7888999999999999999999999999999999999999988876542 1234457889999
Q ss_pred EccccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 007402 263 SCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 342 (605)
Q Consensus 263 ~~~~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~ 342 (605)
.+...++...+..+++.. ..+++||||++++.+..++..|...|+.+..+||+++..+|..+++.|++|..+|||||+.
T Consensus 231 ~~~~~~~~~~l~~~l~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~ 309 (391)
T 1xti_A 231 KLKDNEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL 309 (391)
T ss_dssp ECCGGGHHHHHHHHHHHS-CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCC
T ss_pred EcCchhHHHHHHHHHHhc-CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECCh
Confidence 999989998888888754 5789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCccEEEEeCC
Q 007402 343 TQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSP 422 (605)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~~v~~ 422 (605)
++ +|+|+|++++||+||+|+|+..|+||+||+||.|+.|.+++|+++
T Consensus 310 ~~---------------------------------~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~ 356 (391)
T 1xti_A 310 FG---------------------------------RGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSD 356 (391)
T ss_dssp CS---------------------------------SCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECS
T ss_pred hh---------------------------------cCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcc
Confidence 76 799999999999999999999999999999999999999999998
Q ss_pred chh
Q 007402 423 DEM 425 (605)
Q Consensus 423 ~e~ 425 (605)
.+.
T Consensus 357 ~~~ 359 (391)
T 1xti_A 357 END 359 (391)
T ss_dssp HHH
T ss_pred cch
Confidence 643
No 7
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=9.9e-56 Score=474.29 Aligned_cols=361 Identities=31% Similarity=0.483 Sum_probs=308.7
Q ss_pred hhcccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCC--CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCC
Q 007402 22 AEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEG--KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLA 99 (605)
Q Consensus 22 ~~~~~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~g--kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~ 99 (605)
.....+|++++|++.++++|.++||..|+|+|.++|+.+++| +++++.||||||||++|++|+++.+... ..+
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-----~~~ 95 (412)
T 3fht_A 21 LYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-----NKY 95 (412)
T ss_dssp TCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT-----SCS
T ss_pred ccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhc-----CCC
Confidence 345678999999999999999999999999999999999998 9999999999999999999999987652 346
Q ss_pred CeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccC
Q 007402 100 PAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS 179 (605)
Q Consensus 100 ~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l 179 (605)
+++||++||++|+.|+++.+..+...+. .+.+....++..... .....++|+|+||+++.+++.... ...+
T Consensus 96 ~~~lil~P~~~L~~q~~~~~~~~~~~~~---~~~~~~~~~~~~~~~---~~~~~~~ivv~T~~~l~~~~~~~~---~~~~ 166 (412)
T 3fht_A 96 PQCLCLSPTYELALQTGKVIEQMGKFYP---ELKLAYAVRGNKLER---GQKISEQIVIGTPGTVLDWCSKLK---FIDP 166 (412)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTST---TCCEEEECTTCCCCT---TCCCCCSEEEECHHHHHHHHTTSC---SSCG
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHhhcc---cceEEEeecCcchhh---hhcCCCCEEEECchHHHHHHHhcC---CcCh
Confidence 6899999999999999999998866543 456666666544321 123468999999999999996632 2556
Q ss_pred CCceEEEEeCcchhcc-CCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcE
Q 007402 180 DSLKILVLDEADLLLS-YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ 258 (605)
Q Consensus 180 ~~l~~lViDEad~i~~-~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~ 258 (605)
.++++|||||||++++ .++...+..+...++..+|+++||||+++.+..+...++.+|..+.+.. .......+.
T Consensus 167 ~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 241 (412)
T 3fht_A 167 KKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKR-----EEETLDTIK 241 (412)
T ss_dssp GGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCG-----GGSSCTTEE
T ss_pred hhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeecc-----ccccccCce
Confidence 8899999999999987 7899999999999999999999999999999999999999999887765 445566788
Q ss_pred EEEEEccc-cchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEE
Q 007402 259 QFWISCSE-RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYL 337 (605)
Q Consensus 259 q~~~~~~~-~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iL 337 (605)
++++.+.. ..+...+..++... ..+++||||+++..|..++..|...++.+..+||+|+..+|..+++.|++|.++||
T Consensus 242 ~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vl 320 (412)
T 3fht_A 242 QYYVLCSSRDEKFQALCNLYGAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVL 320 (412)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHH-SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEE
T ss_pred EEEEEcCChHHHHHHHHHHHhhc-CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEE
Confidence 88887764 45666666666643 46799999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCC------CchhHHHhhcccccCC
Q 007402 338 IATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQ------NAAGYVHRIGRTGRAY 411 (605)
Q Consensus 338 IaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~------s~~~yiqRiGRtgR~g 411 (605)
|||+.++ +|||+|++++||+||+|. +..+|+||+||+||.|
T Consensus 321 v~T~~~~---------------------------------~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g 367 (412)
T 3fht_A 321 VTTNVCA---------------------------------RGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFG 367 (412)
T ss_dssp EECGGGT---------------------------------SSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTT
T ss_pred EEcCccc---------------------------------cCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCC
Confidence 9999976 799999999999999995 6689999999999999
Q ss_pred CCccEEEEeCCch-hhHHHHHHHHH
Q 007402 412 NTGASVSLVSPDE-MKIFEEIKSFV 435 (605)
Q Consensus 412 ~~G~ai~~v~~~e-~~~~~~~~~~l 435 (605)
+.|.+++|+.+.+ ...+..+++.+
T Consensus 368 ~~g~~~~~~~~~~~~~~~~~i~~~~ 392 (412)
T 3fht_A 368 KRGLAVNMVDSKHSMNILNRIQEHF 392 (412)
T ss_dssp CCEEEEEEECSHHHHHHHHHHHHHH
T ss_pred CCceEEEEEcChhhHHHHHHHHHHH
Confidence 9999999998764 33344444433
No 8
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.3e-55 Score=496.07 Aligned_cols=374 Identities=31% Similarity=0.448 Sum_probs=310.9
Q ss_pred cccCcccCC----CCHHHHHHHHHCCCCCChHHHHHHHHHHh--CCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCC
Q 007402 24 EEKSFEELG----LDLRLVHALNKKGIQKPTLIQQASIPLIL--EGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSK 97 (605)
Q Consensus 24 ~~~~f~~~~----L~~~l~~al~~~g~~~pt~iQ~~aIp~~l--~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~ 97 (605)
...+|++|. |++.++++|..+||..|||+|.++|+.++ .|+|+|+.||||||||++|++|+++.+...... ..
T Consensus 15 ~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~-~~ 93 (579)
T 3sqw_A 15 KEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD-SQ 93 (579)
T ss_dssp CCCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS-ST
T ss_pred CCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhcccc-cc
Confidence 455677665 99999999999999999999999999999 789999999999999999999999998875422 23
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHH-cCCCcEEEECCchHHHHHhcCCCCCc
Q 007402 98 LAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL-AGPPDIVIATPGCMPKCLSTGVLQSK 176 (605)
Q Consensus 98 ~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l-~~~~dIvV~TP~~l~~~l~~~~~~~~ 176 (605)
.++++|||+||++|+.|+++.+..+.........+.+..+.|+.....+...+ ...++|+|+||++|.+++.... .
T Consensus 94 ~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~---~ 170 (579)
T 3sqw_A 94 YMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYS---N 170 (579)
T ss_dssp TSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHH---H
T ss_pred CCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhcc---c
Confidence 46789999999999999999999987653222246677788888776655554 3579999999999999987641 2
Q ss_pred ccCCCceEEEEeCcchhccCCcHHHHHHHHhhCC-------CCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCcc
Q 007402 177 SFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP-------RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVK 249 (605)
Q Consensus 177 ~~l~~l~~lViDEad~i~~~g~~~~l~~i~~~lp-------~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~ 249 (605)
..+..+++|||||||+++++||..++..|+..++ ..+|+++||||+++.+..+...++.+|..+.+......
T Consensus 171 ~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~- 249 (579)
T 3sqw_A 171 KFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKN- 249 (579)
T ss_dssp HHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSS-
T ss_pred cccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCcc-
Confidence 5678899999999999999999999999987764 37799999999999999999999999887766442211
Q ss_pred ccccCCCcEEEEEEccccc-hH----HHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHc---CCcEEEEcCCCCHHH
Q 007402 250 DEVIPKNVQQFWISCSERD-KL----LYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKF---GIKSAILNAELPQNS 321 (605)
Q Consensus 250 ~~~~~~~l~q~~~~~~~~~-k~----~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~---gi~~~~l~~~l~~~~ 321 (605)
.......+.+.++.+.... +. ..+...+......+++||||+++..|..++..|... ++.+..+||+|++..
T Consensus 250 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~ 329 (579)
T 3sqw_A 250 EPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNK 329 (579)
T ss_dssp SCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHH
T ss_pred ccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHH
Confidence 1233446777777665432 22 222333333344679999999999999999999987 899999999999999
Q ss_pred HHHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHH
Q 007402 322 RLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYV 401 (605)
Q Consensus 322 R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yi 401 (605)
|..++++|++|.++|||||++++ +|||+|+|++||+||+|.++.+|+
T Consensus 330 R~~~~~~F~~g~~~vLVaT~~~~---------------------------------~GiDip~v~~VI~~~~p~s~~~y~ 376 (579)
T 3sqw_A 330 RTSLVKRFKKDESGILVCTDVGA---------------------------------RGMDFPNVHEVLQIGVPSELANYI 376 (579)
T ss_dssp HHHHHHHHHHCSSEEEEECGGGT---------------------------------SSCCCTTCCEEEEESCCSSTTHHH
T ss_pred HHHHHHHhhcCCCeEEEEcchhh---------------------------------cCCCcccCCEEEEcCCCCCHHHhh
Confidence 99999999999999999999976 899999999999999999999999
Q ss_pred HhhcccccCCCCccEEEEeCCchhhHHHHHHHHH
Q 007402 402 HRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435 (605)
Q Consensus 402 qRiGRtgR~g~~G~ai~~v~~~e~~~~~~~~~~l 435 (605)
||+|||||+|+.|.|++|+++.+...+..+++..
T Consensus 377 Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~ 410 (579)
T 3sqw_A 377 HRIGRTARSGKEGSSVLFICKDELPFVRELEDAK 410 (579)
T ss_dssp HHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred hhccccccCCCCceEEEEEcccHHHHHHHHHHHh
Confidence 9999999999999999999999887766666543
No 9
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=9.7e-55 Score=463.26 Aligned_cols=346 Identities=31% Similarity=0.500 Sum_probs=302.7
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCC--CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCe
Q 007402 24 EEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEG--KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPA 101 (605)
Q Consensus 24 ~~~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~g--kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~ 101 (605)
...+|++++|++.++++|.++||..|+|+|.++|+.+++| +++++.||||||||++|++|+++.+... ..+.+
T Consensus 3 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-----~~~~~ 77 (395)
T 3pey_A 3 MAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE-----DASPQ 77 (395)
T ss_dssp -CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT-----CCSCC
T ss_pred cccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccC-----CCCcc
Confidence 4578999999999999999999999999999999999998 9999999999999999999999987652 34678
Q ss_pred EEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCC
Q 007402 102 ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS 181 (605)
Q Consensus 102 ~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~ 181 (605)
+||++||++|+.|+++.+..+.... .+.+..+.++..... ....++|+|+||+++.+++.... ..+.+
T Consensus 78 ~lil~P~~~L~~q~~~~~~~~~~~~----~~~~~~~~~~~~~~~----~~~~~~iiv~T~~~l~~~~~~~~----~~~~~ 145 (395)
T 3pey_A 78 AICLAPSRELARQTLEVVQEMGKFT----KITSQLIVPDSFEKN----KQINAQVIVGTPGTVLDLMRRKL----MQLQK 145 (395)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTS----CCCEEEESTTSSCTT----SCBCCSEEEECHHHHHHHHHTTC----BCCTT
T ss_pred EEEECCCHHHHHHHHHHHHHHhccc----CeeEEEEecCchhhh----ccCCCCEEEEcHHHHHHHHHcCC----ccccc
Confidence 9999999999999999999886544 456666666543211 23468999999999999998754 66888
Q ss_pred ceEEEEeCcchhcc-CCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEE
Q 007402 182 LKILVLDEADLLLS-YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF 260 (605)
Q Consensus 182 l~~lViDEad~i~~-~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~ 260 (605)
+++|||||||.+.+ .++...+..+...++...|+++||||+++.+..+...++.++..+.+.. .......+.+.
T Consensus 146 ~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 220 (395)
T 3pey_A 146 IKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQT-----NEVNVDAIKQL 220 (395)
T ss_dssp CCEEEEETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCG-----GGCSCTTEEEE
T ss_pred CCEEEEEChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccc-----cccccccccEE
Confidence 99999999999988 7899999999999999999999999999999999999999998887655 34455677788
Q ss_pred EEEcc-ccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEE
Q 007402 261 WISCS-ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIA 339 (605)
Q Consensus 261 ~~~~~-~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIa 339 (605)
+..+. ...+...+..++.. ...+++||||+++..+..++..|...|+.+..+||+++..+|..+++.|++|..+||||
T Consensus 221 ~~~~~~~~~~~~~l~~~~~~-~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~ 299 (395)
T 3pey_A 221 YMDCKNEADKFDVLTELYGL-MTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLIT 299 (395)
T ss_dssp EEECSSHHHHHHHHHHHHTT-TTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEE
T ss_pred EEEcCchHHHHHHHHHHHHh-ccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEE
Confidence 77774 45566666666654 34689999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCC------CchhHHHhhcccccCCCC
Q 007402 340 TDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQ------NAAGYVHRIGRTGRAYNT 413 (605)
Q Consensus 340 Td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~------s~~~yiqRiGRtgR~g~~ 413 (605)
|+.++ +|||+|++++||+||+|. |+.+|+||+||+||.|+.
T Consensus 300 T~~~~---------------------------------~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~ 346 (395)
T 3pey_A 300 TNVLA---------------------------------RGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRK 346 (395)
T ss_dssp CGGGS---------------------------------SSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCC
T ss_pred CChhh---------------------------------cCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCC
Confidence 99976 799999999999999999 999999999999999999
Q ss_pred ccEEEEeCCchh
Q 007402 414 GASVSLVSPDEM 425 (605)
Q Consensus 414 G~ai~~v~~~e~ 425 (605)
|.+++|+.+.+.
T Consensus 347 g~~~~~~~~~~~ 358 (395)
T 3pey_A 347 GVAISFVHDKNS 358 (395)
T ss_dssp EEEEEEECSHHH
T ss_pred ceEEEEEechHH
Confidence 999999987543
No 10
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=3.2e-55 Score=491.02 Aligned_cols=373 Identities=31% Similarity=0.450 Sum_probs=309.1
Q ss_pred ccCcccCC----CCHHHHHHHHHCCCCCChHHHHHHHHHHh--CCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCC
Q 007402 25 EKSFEELG----LDLRLVHALNKKGIQKPTLIQQASIPLIL--EGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKL 98 (605)
Q Consensus 25 ~~~f~~~~----L~~~l~~al~~~g~~~pt~iQ~~aIp~~l--~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~ 98 (605)
..+|+++. |++.++++|..+||.+|||+|.++|+.++ .|+|+|++||||||||++|++|+++.+...... ...
T Consensus 67 ~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~-~~~ 145 (563)
T 3i5x_A 67 EVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD-SQY 145 (563)
T ss_dssp CCCHHHHHHTTSSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS-STT
T ss_pred CcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc-ccC
Confidence 45677665 99999999999999999999999999999 678999999999999999999999999875422 233
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHH-cCCCcEEEECCchHHHHHhcCCCCCcc
Q 007402 99 APAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL-AGPPDIVIATPGCMPKCLSTGVLQSKS 177 (605)
Q Consensus 99 ~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l-~~~~dIvV~TP~~l~~~l~~~~~~~~~ 177 (605)
++++|||+||++|+.|+++.+..+.........+.+..+.|+.....+...+ ...++|+|+||+++.+++.... ..
T Consensus 146 ~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~---~~ 222 (563)
T 3i5x_A 146 MVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYS---NK 222 (563)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHH---HH
T ss_pred CeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhcc---cc
Confidence 5789999999999999999999987653221245677788887766555444 4589999999999999987642 24
Q ss_pred cCCCceEEEEeCcchhccCCcHHHHHHHHhhCC-------CCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccc
Q 007402 178 FSDSLKILVLDEADLLLSYGYEDDLKALSAVIP-------RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD 250 (605)
Q Consensus 178 ~l~~l~~lViDEad~i~~~g~~~~l~~i~~~lp-------~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~ 250 (605)
.++.+++|||||||++++++|..++..++..++ ..+|+++||||+++.+..+...++.+|..+.+...... .
T Consensus 223 ~~~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~-~ 301 (563)
T 3i5x_A 223 FFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKN-E 301 (563)
T ss_dssp HCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSS-S
T ss_pred ccccceEEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCC-C
Confidence 578899999999999999999999999987653 37899999999999999999999999887766442211 1
Q ss_pred cccCCCcEEEEEEcccc-chH----HHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHc---CCcEEEEcCCCCHHHH
Q 007402 251 EVIPKNVQQFWISCSER-DKL----LYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKF---GIKSAILNAELPQNSR 322 (605)
Q Consensus 251 ~~~~~~l~q~~~~~~~~-~k~----~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~---gi~~~~l~~~l~~~~R 322 (605)
......+.+.++.+... .+. ..+...+......+++||||+++..|..++..|... ++.+..+||+|++..|
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R 381 (563)
T 3i5x_A 302 PEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKR 381 (563)
T ss_dssp CSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHH
T ss_pred ccccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHH
Confidence 23344677777766543 222 222333333345779999999999999999999987 8999999999999999
Q ss_pred HHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHH
Q 007402 323 LHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVH 402 (605)
Q Consensus 323 ~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiq 402 (605)
..+++.|++|..+|||||++++ +|||+|+|++||+||+|.++.+|+|
T Consensus 382 ~~~~~~f~~g~~~vLvaT~~~~---------------------------------~GiDip~v~~VI~~~~p~s~~~y~Q 428 (563)
T 3i5x_A 382 TSLVKRFKKDESGILVCTDVGA---------------------------------RGMDFPNVHEVLQIGVPSELANYIH 428 (563)
T ss_dssp HHHHHHHHHCSSEEEEECGGGT---------------------------------SSCCCTTCCEEEEESCCSSTTHHHH
T ss_pred HHHHHHHhcCCCCEEEEcchhh---------------------------------cCCCcccCCEEEEECCCCchhhhhh
Confidence 9999999999999999999976 8999999999999999999999999
Q ss_pred hhcccccCCCCccEEEEeCCchhhHHHHHHHHH
Q 007402 403 RIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 435 (605)
Q Consensus 403 RiGRtgR~g~~G~ai~~v~~~e~~~~~~~~~~l 435 (605)
|+|||||+|+.|.|++|+.+.+...+..+++..
T Consensus 429 r~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~ 461 (563)
T 3i5x_A 429 RIGRTARSGKEGSSVLFICKDELPFVRELEDAK 461 (563)
T ss_dssp HHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred hcCccccCCCCceEEEEEchhHHHHHHHHHHHh
Confidence 999999999999999999998887666665544
No 11
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.6e-54 Score=455.31 Aligned_cols=354 Identities=32% Similarity=0.481 Sum_probs=315.0
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCC-CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeE
Q 007402 24 EEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEG-KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAA 102 (605)
Q Consensus 24 ~~~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~g-kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~ 102 (605)
...+|++++|++.++++|.++||..|+|+|.++|+.+++| +++++.||||||||++|++|+++.+.. ..+.++
T Consensus 4 ~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~------~~~~~~ 77 (367)
T 1hv8_A 4 EYMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE------NNGIEA 77 (367)
T ss_dssp CCCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS------SSSCCE
T ss_pred ccCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc------cCCCcE
Confidence 3568999999999999999999999999999999999998 799999999999999999999987654 236789
Q ss_pred EEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCc
Q 007402 103 LVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSL 182 (605)
Q Consensus 103 LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l 182 (605)
||++||++|+.|+++.+..+.... .+.+..+.|+.....+...+. .++|+|+||+++..++..+. ..+.++
T Consensus 78 lil~P~~~L~~q~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~----~~~~~~ 148 (367)
T 1hv8_A 78 IILTPTRELAIQVADEIESLKGNK----NLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGT----LNLKNV 148 (367)
T ss_dssp EEECSCHHHHHHHHHHHHHHHCSS----CCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTC----SCTTSC
T ss_pred EEEcCCHHHHHHHHHHHHHHhCCC----CceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCC----cccccC
Confidence 999999999999999999886432 577888888888766555554 78999999999999998764 567889
Q ss_pred eEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEEEE
Q 007402 183 KILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWI 262 (605)
Q Consensus 183 ~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~ 262 (605)
+++|+||||.+.+++|...+..++..+++..|+++||||++..+..+...++.++..+.... ..++.+.++
T Consensus 149 ~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 219 (367)
T 1hv8_A 149 KYFILDEADEMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKI---------NANIEQSYV 219 (367)
T ss_dssp CEEEEETHHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS---------SSSSEEEEE
T ss_pred CEEEEeCchHhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC---------CCCceEEEE
Confidence 99999999999999999999999999999999999999999999888888888877665432 236788888
Q ss_pred EccccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 007402 263 SCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 342 (605)
Q Consensus 263 ~~~~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~ 342 (605)
.+...+++..+..+++ ...+++||||++++.+..++..|+..|+.+..+||+++..+|..+++.|++|..+|||||+.
T Consensus 220 ~~~~~~~~~~l~~~l~--~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~ 297 (367)
T 1hv8_A 220 EVNENERFEALCRLLK--NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDV 297 (367)
T ss_dssp ECCGGGHHHHHHHHHC--STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTT
T ss_pred EeChHHHHHHHHHHHh--cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECCh
Confidence 8998899988888876 34679999999999999999999999999999999999999999999999999999999998
Q ss_pred CCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCccEEEEeCC
Q 007402 343 TQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSP 422 (605)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~~v~~ 422 (605)
++ +|+|+|++++||+||+|.|+.+|+||+||+||.|+.|.+++|+++
T Consensus 298 ~~---------------------------------~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~ 344 (367)
T 1hv8_A 298 MS---------------------------------RGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINR 344 (367)
T ss_dssp HH---------------------------------HHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECT
T ss_pred hh---------------------------------cCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcH
Confidence 65 799999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHh
Q 007402 423 DEMKIFEEIKSFVG 436 (605)
Q Consensus 423 ~e~~~~~~~~~~l~ 436 (605)
.+...+..+++.+.
T Consensus 345 ~~~~~~~~i~~~~~ 358 (367)
T 1hv8_A 345 REYKKLRYIERAMK 358 (367)
T ss_dssp TSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC
Confidence 88866666655543
No 12
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=9.4e-57 Score=493.78 Aligned_cols=347 Identities=31% Similarity=0.489 Sum_probs=176.7
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCC--CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeE
Q 007402 25 EKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEG--KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAA 102 (605)
Q Consensus 25 ~~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~g--kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~ 102 (605)
..+|++++|++.++++|..+||..|||+|.++||.++.| +|+|+.||||||||++|++|+++.+... ..++++
T Consensus 91 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~-----~~~~~~ 165 (479)
T 3fmp_B 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-----NKYPQC 165 (479)
T ss_dssp CCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTT-----SCSCCE
T ss_pred cCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhc-----CCCCcE
Confidence 468999999999999999999999999999999999997 9999999999999999999999877552 346689
Q ss_pred EEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCc
Q 007402 103 LVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSL 182 (605)
Q Consensus 103 LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l 182 (605)
|||+||++|+.|+++.+..+..++. .+.+....++..... .....++|+|+||+++.+++.+.. ...+.++
T Consensus 166 lil~Pt~~La~Q~~~~~~~~~~~~~---~~~~~~~~~~~~~~~---~~~~~~~Ivv~Tp~~l~~~l~~~~---~~~~~~~ 236 (479)
T 3fmp_B 166 LCLSPTYELALQTGKVIEQMGKFYP---ELKLAYAVRGNKLER---GQKISEQIVIGTPGTVLDWCSKLK---FIDPKKI 236 (479)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTTST---TCCEEEESTTCCCCT---TCCCCCSEEEECHHHHHHHHTTSC---CCCGGGC
T ss_pred EEEeChHHHHHHHHHHHHHHHhhCC---CceEEEEeCCccccc---cccCCCCEEEECchHHHHHHHhcC---CcCcccC
Confidence 9999999999999999999876553 355555555543221 123467999999999999997642 2566899
Q ss_pred eEEEEeCcchhcc-CCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEEE
Q 007402 183 KILVLDEADLLLS-YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW 261 (605)
Q Consensus 183 ~~lViDEad~i~~-~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~ 261 (605)
++|||||||.+++ .+|...+..+...++..+|+++||||++..+..+...++.+|..+.+.. .......+.+++
T Consensus 237 ~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~-----~~~~~~~~~~~~ 311 (479)
T 3fmp_B 237 KVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKR-----EEETLDTIKQYY 311 (479)
T ss_dssp CEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC------------------
T ss_pred CEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccc-----cccCcCCceEEE
Confidence 9999999999987 6899999999999999999999999999999999999999999988866 444556778888
Q ss_pred EEccc-cchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEc
Q 007402 262 ISCSE-RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIAT 340 (605)
Q Consensus 262 ~~~~~-~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaT 340 (605)
+.+.. ..+...+..++... ..+++||||+++..|..++..|...++.+.++||+|++..|..+++.|++|.++|||||
T Consensus 312 ~~~~~~~~~~~~l~~~~~~~-~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T 390 (479)
T 3fmp_B 312 VLCSSRDEKFQALCNLYGAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTT 390 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEeCCHHHHHHHHHHHHhhc-cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEc
Confidence 77764 45666666666543 36799999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCC------CchhHHHhhcccccCCCCc
Q 007402 341 DDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQ------NAAGYVHRIGRTGRAYNTG 414 (605)
Q Consensus 341 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~------s~~~yiqRiGRtgR~g~~G 414 (605)
++++ +|||+|+|++||+||+|. +...|+||+|||||+|+.|
T Consensus 391 ~~~~---------------------------------~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G 437 (479)
T 3fmp_B 391 NVCA---------------------------------RGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRG 437 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccc---------------------------------cCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCc
Confidence 9976 899999999999999994 6789999999999999999
Q ss_pred cEEEEeCCch
Q 007402 415 ASVSLVSPDE 424 (605)
Q Consensus 415 ~ai~~v~~~e 424 (605)
.+++|+.+.+
T Consensus 438 ~~i~~~~~~~ 447 (479)
T 3fmp_B 438 LAVNMVDSKH 447 (479)
T ss_dssp ----------
T ss_pred eEEEEEcCcc
Confidence 9999998764
No 13
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=5.4e-56 Score=473.47 Aligned_cols=362 Identities=31% Similarity=0.489 Sum_probs=186.2
Q ss_pred hhhcccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCC
Q 007402 21 EAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAP 100 (605)
Q Consensus 21 ~~~~~~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~ 100 (605)
..+...+|++++|++.++++|..+||..|+|+|.++|+.+++|+|+++.||||+|||++|++|+++.+... ..+.
T Consensus 16 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~-----~~~~ 90 (394)
T 1fuu_A 16 YDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS-----VKAP 90 (394)
T ss_dssp SCCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT-----CCSC
T ss_pred cccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc-----CCCC
Confidence 34456789999999999999999999999999999999999999999999999999999999999987652 3467
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCC
Q 007402 101 AALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD 180 (605)
Q Consensus 101 ~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~ 180 (605)
++||++||++|+.|+++.+..+.... ++.+..+.|+.+.......+. .++|+|+||+++...+..+. ..+.
T Consensus 91 ~~lil~P~~~L~~q~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~----~~~~ 161 (394)
T 1fuu_A 91 QALMLAPTRELALQIQKVVMALAFHM----DIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRR----FRTD 161 (394)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTS----CCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTS----SCCT
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhccC----CeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCC----cchh
Confidence 89999999999999999998876543 578888889888766555444 68999999999999998764 5678
Q ss_pred CceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEE
Q 007402 181 SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF 260 (605)
Q Consensus 181 ~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~ 260 (605)
++++||+||||.+.+++|...+..++..+++..|+++||||+++.+..+...++.+|..+.... .......+.++
T Consensus 162 ~~~~vIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 236 (394)
T 1fuu_A 162 KIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKK-----DELTLEGIKQF 236 (394)
T ss_dssp TCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC----------------
T ss_pred hCcEEEEEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecC-----ccccCCCceEE
Confidence 8999999999999999999999999999999999999999999999899899999998887765 33444567777
Q ss_pred EEEccccc-hHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEE
Q 007402 261 WISCSERD-KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIA 339 (605)
Q Consensus 261 ~~~~~~~~-k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIa 339 (605)
+..+...+ +...+..+++.. ..+++||||++++.+..++..|+..++.+..+||+++..+|..+++.|++|..+||||
T Consensus 237 ~~~~~~~~~~~~~l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~ 315 (394)
T 1fuu_A 237 YVNVEEEEYKYECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILIS 315 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEcCchhhHHHHHHHHHhcC-CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEE
Confidence 77666544 666666665542 4679999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCccEEEE
Q 007402 340 TDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSL 419 (605)
Q Consensus 340 Td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~~ 419 (605)
|+.++ +|+|+|++++||+||+|.++.+|+||+||+||.|+.|.+++|
T Consensus 316 T~~~~---------------------------------~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~ 362 (394)
T 1fuu_A 316 TDLLA---------------------------------RGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINF 362 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChhh---------------------------------cCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEE
Confidence 99976 799999999999999999999999999999999999999999
Q ss_pred eCCchhhHHHHHHHHH
Q 007402 420 VSPDEMKIFEEIKSFV 435 (605)
Q Consensus 420 v~~~e~~~~~~~~~~l 435 (605)
+++.+...+..+++.+
T Consensus 363 ~~~~~~~~~~~l~~~~ 378 (394)
T 1fuu_A 363 VTNEDVGAMRELEKFY 378 (394)
T ss_dssp ----------------
T ss_pred EchhHHHHHHHHHHHh
Confidence 9998775555444433
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.6e-51 Score=429.31 Aligned_cols=333 Identities=33% Similarity=0.493 Sum_probs=286.2
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHH
Q 007402 33 LDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELC 112 (605)
Q Consensus 33 L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa 112 (605)
|++.|.++|.++||..|+|+|.++|+.+++|+++++.||||+|||++|++|+++. +.++||++||++|+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~-----------~~~~liv~P~~~L~ 69 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL-----------GMKSLVVTPTRELT 69 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH-----------TCCEEEECSSHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh-----------cCCEEEEeCCHHHH
Confidence 6889999999999999999999999999999999999999999999999999874 45699999999999
Q ss_pred HHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcch
Q 007402 113 QQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADL 192 (605)
Q Consensus 113 ~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~ 192 (605)
.|+++.+..+.... ++.+..+.|+.....+...+. .++|+|+||+++..++..+. ..+.++++||+||||+
T Consensus 70 ~q~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~----~~~~~~~~iViDEah~ 140 (337)
T 2z0m_A 70 RQVASHIRDIGRYM----DTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGV----IDLSSFEIVIIDEADL 140 (337)
T ss_dssp HHHHHHHHHHTTTS----CCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTTS----CCGGGCSEEEEESHHH
T ss_pred HHHHHHHHHHhhhc----CCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcCC----cchhhCcEEEEEChHH
Confidence 99999999876544 567888889888776665554 49999999999999988754 5578899999999999
Q ss_pred hccCCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEEEEEccccchHHH
Q 007402 193 LLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLY 272 (605)
Q Consensus 193 i~~~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~~~~~k~~~ 272 (605)
+.+++|...+..++..++...++++||||+++.+......++.++..+... ....++.+.++.+....+...
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 212 (337)
T 2z0m_A 141 MFEMGFIDDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC--------IGLANVEHKFVHVKDDWRSKV 212 (337)
T ss_dssp HHHTTCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS--------GGGGGEEEEEEECSSSSHHHH
T ss_pred hhccccHHHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc--------cccCCceEEEEEeChHHHHHH
Confidence 999999999999999999999999999999999988888888888766422 233466777777765544322
Q ss_pred HHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCcccccccC
Q 007402 273 ILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSD 352 (605)
Q Consensus 273 l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~ 352 (605)
..+.. ...+++||||++++.++.++..|. .+..+||+++..+|..++++|++|..+|||||+.++
T Consensus 213 --~~~~~-~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~-------- 277 (337)
T 2z0m_A 213 --QALRE-NKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVAS-------- 277 (337)
T ss_dssp --HHHHT-CCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHH--------
T ss_pred --HHHHh-CCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccc--------
Confidence 33332 346799999999999999988876 688999999999999999999999999999999865
Q ss_pred CCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCccEEEEeCCchhhHHHHHH
Q 007402 353 EGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 432 (605)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~~v~~~e~~~~~~~~ 432 (605)
+|+|+|++++||+||+|+|+.+|+||+||+||.|+.|.+++|+. .+....+.++
T Consensus 278 -------------------------~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~ 331 (337)
T 2z0m_A 278 -------------------------RGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVK 331 (337)
T ss_dssp -------------------------TTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC
T ss_pred -------------------------cCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHH
Confidence 79999999999999999999999999999999999999999999 6655554444
Q ss_pred HH
Q 007402 433 SF 434 (605)
Q Consensus 433 ~~ 434 (605)
+.
T Consensus 332 ~~ 333 (337)
T 2z0m_A 332 KV 333 (337)
T ss_dssp --
T ss_pred HH
Confidence 43
No 15
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=3.4e-51 Score=458.57 Aligned_cols=344 Identities=19% Similarity=0.236 Sum_probs=280.2
Q ss_pred hhhcccCcccCCCCHHHHHHHHH-CCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCC
Q 007402 21 EAEEEKSFEELGLDLRLVHALNK-KGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLA 99 (605)
Q Consensus 21 ~~~~~~~f~~~~L~~~l~~al~~-~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~ 99 (605)
.......+.+|+|++.+.++|.. +||..|+|+|.++|+.+++|+|+|+.||||+|||++|++|++.. .
T Consensus 16 ~~~~~w~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~-----------~ 84 (591)
T 2v1x_A 16 SSPAAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS-----------D 84 (591)
T ss_dssp CCGGGGCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS-----------S
T ss_pred cchhccccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc-----------C
Confidence 33445666679999999999999 69999999999999999999999999999999999999999752 4
Q ss_pred CeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHH------cCCCcEEEECCchHH------HH
Q 007402 100 PAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL------AGPPDIVIATPGCMP------KC 167 (605)
Q Consensus 100 ~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l------~~~~dIvV~TP~~l~------~~ 167 (605)
.++|||+|+++|+.|+++.+..+ ++.+..++|+.+.......+ ...++|+|+||++|. +.
T Consensus 85 g~~lVisP~~~L~~q~~~~l~~~--------gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~ 156 (591)
T 2v1x_A 85 GFTLVICPLISLMEDQLMVLKQL--------GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSR 156 (591)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHH--------TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHH
T ss_pred CcEEEEeCHHHHHHHHHHHHHhc--------CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHH
Confidence 57999999999999999999876 57888899988776554332 467999999999874 33
Q ss_pred HhcCCCCCcccCCCceEEEEeCcchhccCC--cHHHHHH---HHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEc
Q 007402 168 LSTGVLQSKSFSDSLKILVLDEADLLLSYG--YEDDLKA---LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL 242 (605)
Q Consensus 168 l~~~~~~~~~~l~~l~~lViDEad~i~~~g--~~~~l~~---i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l 242 (605)
+.. ...+.++.+|||||||++..|| |..++.. +...+ +..|+++||||+++.+......++..+..+.+
T Consensus 157 l~~-----~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~-~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~ 230 (591)
T 2v1x_A 157 LEK-----AYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQF-PNASLIGLTATATNHVLTDAQKILCIEKCFTF 230 (591)
T ss_dssp HHH-----HHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHC-TTSEEEEEESSCCHHHHHHHHHHTTCCSCEEE
T ss_pred HHh-----hhhccCCcEEEEECcccccccccccHHHHHHHHHHHHhC-CCCcEEEEecCCCHHHHHHHHHHhCCCCcEEE
Confidence 332 1456789999999999999998 6666554 33444 46899999999999886666555554432222
Q ss_pred CCccCccccccCCCcEEEEEEcc--ccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHH
Q 007402 243 PEVGDVKDEVIPKNVQQFWISCS--ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 320 (605)
Q Consensus 243 ~~~~~~~~~~~~~~l~q~~~~~~--~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~ 320 (605)
.. .....++...+.... ..++...+..+++.....+++||||+++..++.++..|...|+.+..+||+|+..
T Consensus 231 ~~------~~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~ 304 (591)
T 2v1x_A 231 TA------SFNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPE 304 (591)
T ss_dssp EC------CCCCTTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHH
T ss_pred ec------CCCCcccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHH
Confidence 11 122334444333332 2345556666666544578999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhH
Q 007402 321 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGY 400 (605)
Q Consensus 321 ~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~y 400 (605)
+|..+++.|..|.++|||||+.++ +|||+|+|++||+||+|.|+++|
T Consensus 305 ~R~~~~~~F~~g~~~VlVAT~a~~---------------------------------~GID~p~V~~VI~~~~p~s~~~y 351 (591)
T 2v1x_A 305 DKTTVHRKWSANEIQVVVATVAFG---------------------------------MGIDKPDVRFVIHHSMSKSMENY 351 (591)
T ss_dssp HHHHHHHHHHTTSSSEEEECTTSC---------------------------------TTCCCSCEEEEEESSCCSSHHHH
T ss_pred HHHHHHHHHHcCCCeEEEEechhh---------------------------------cCCCcccccEEEEeCCCCCHHHH
Confidence 999999999999999999999976 79999999999999999999999
Q ss_pred HHhhcccccCCCCccEEEEeCCchhhHH
Q 007402 401 VHRIGRTGRAYNTGASVSLVSPDEMKIF 428 (605)
Q Consensus 401 iqRiGRtgR~g~~G~ai~~v~~~e~~~~ 428 (605)
+||+||+||.|++|.|++|+++.|...+
T Consensus 352 ~Qr~GRaGR~G~~g~~i~l~~~~D~~~~ 379 (591)
T 2v1x_A 352 YQESGRAGRDDMKADCILYYGFGDIFRI 379 (591)
T ss_dssp HHHHTTSCTTSSCEEEEEEECHHHHHHH
T ss_pred HHHhccCCcCCCCceEEEEEChHHHHHH
Confidence 9999999999999999999998876443
No 16
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=2.2e-49 Score=439.10 Aligned_cols=335 Identities=21% Similarity=0.285 Sum_probs=275.3
Q ss_pred cCcccCCCCHHHHHHHHH-CCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEE
Q 007402 26 KSFEELGLDLRLVHALNK-KGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALV 104 (605)
Q Consensus 26 ~~f~~~~L~~~l~~al~~-~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~Li 104 (605)
.+|++++|++.+.+.|.+ +||..|+|+|.++|+.+++|+|+++.||||+|||++|++|++.. ...+||
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~-----------~g~~lv 70 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL-----------NGLTVV 70 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS-----------SSEEEE
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh-----------CCCEEE
Confidence 579999999999999999 89999999999999999999999999999999999999999852 346999
Q ss_pred EcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHH----HHHcCCCcEEEECCchHHHHHhcCCCCCcccCC
Q 007402 105 LVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLR----AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD 180 (605)
Q Consensus 105 lvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~----~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~ 180 (605)
++|+++|+.|+++.+..+ ++.+..++++.+..... ....+.++|+|+||+++....... .....
T Consensus 71 i~P~~aL~~q~~~~l~~~--------gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~----~l~~~ 138 (523)
T 1oyw_A 71 VSPLISLMKDQVDQLQAN--------GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLE----HLAHW 138 (523)
T ss_dssp ECSCHHHHHHHHHHHHHT--------TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHH----HHTTS
T ss_pred ECChHHHHHHHHHHHHHc--------CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHH----HHhhC
Confidence 999999999999998864 57788888887765433 334467999999999985322111 13346
Q ss_pred CceEEEEeCcchhccCC--cHHHHHH---HHhhCCCCceEEEEeeecChhHHH-HHH-HhcCCCeEEEcCCccCcccccc
Q 007402 181 SLKILVLDEADLLLSYG--YEDDLKA---LSAVIPRGCQCLLMSATSSSDVDK-LKK-LILHNPYILTLPEVGDVKDEVI 253 (605)
Q Consensus 181 ~l~~lViDEad~i~~~g--~~~~l~~---i~~~lp~~~q~il~SATl~~~v~~-l~~-~~l~~p~~i~l~~~~~~~~~~~ 253 (605)
++.+|||||||++.+|| |..++.. +...+| ..+++++|||+++.+.. +.. +.+.+|.++.... .
T Consensus 139 ~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~--------~ 209 (523)
T 1oyw_A 139 NPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFP-TLPFMALTATADDTTRQDIVRLLGLNDPLIQISSF--------D 209 (523)
T ss_dssp CEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHCT-TSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCC--------C
T ss_pred CCCEEEEeCccccCcCCCccHHHHHHHHHHHHhCC-CCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCC--------C
Confidence 79999999999999988 6555544 445555 58999999999988743 333 4456666553211 1
Q ss_pred CCCcEEEEEEccccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCC
Q 007402 254 PKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGL 333 (605)
Q Consensus 254 ~~~l~q~~~~~~~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~ 333 (605)
..++.. ......++...+..+++.. ..+++||||+++..++.++..|...|+.+..+||+|+..+|..+++.|.+|.
T Consensus 210 r~~l~~--~v~~~~~~~~~l~~~l~~~-~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~ 286 (523)
T 1oyw_A 210 RPNIRY--MLMEKFKPLDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDD 286 (523)
T ss_dssp CTTEEE--EEEECSSHHHHHHHHHHHT-TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred CCceEE--EEEeCCCHHHHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCC
Confidence 234433 3333456666777777654 4679999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCC
Q 007402 334 FDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNT 413 (605)
Q Consensus 334 ~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~ 413 (605)
++|||||+.++ +|||+|+|++||+||+|.|+++|+||+||+||.|.+
T Consensus 287 ~~vlVaT~a~~---------------------------------~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~ 333 (523)
T 1oyw_A 287 LQIVVATVAFG---------------------------------MGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLP 333 (523)
T ss_dssp CSEEEECTTSC---------------------------------TTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSC
T ss_pred CeEEEEechhh---------------------------------CCCCccCccEEEEECCCCCHHHHHHHhccccCCCCC
Confidence 99999999976 799999999999999999999999999999999999
Q ss_pred ccEEEEeCCchhhHH
Q 007402 414 GASVSLVSPDEMKIF 428 (605)
Q Consensus 414 G~ai~~v~~~e~~~~ 428 (605)
|.|++|+++.+...+
T Consensus 334 ~~~~l~~~~~d~~~~ 348 (523)
T 1oyw_A 334 AEAMLFYDPADMAWL 348 (523)
T ss_dssp EEEEEEECHHHHHHH
T ss_pred ceEEEEeCHHHHHHH
Confidence 999999998776443
No 17
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=8.2e-50 Score=430.26 Aligned_cols=325 Identities=22% Similarity=0.311 Sum_probs=262.2
Q ss_pred HHHHHHH-CCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHH
Q 007402 37 LVHALNK-KGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQV 115 (605)
Q Consensus 37 l~~al~~-~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv 115 (605)
+.+.+.+ +|| +|||+|.++||.+++|+|+++.||||||||++|++|++..+. .+.++|||+||++|+.|+
T Consensus 10 ~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~--------~~~~~lil~Pt~~L~~q~ 80 (414)
T 3oiy_A 10 FRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR--------KGKKSALVFPTVTLVKQT 80 (414)
T ss_dssp HHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHT--------TTCCEEEEESSHHHHHHH
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhc--------CCCEEEEEECCHHHHHHH
Confidence 4455555 466 799999999999999999999999999999999999888652 267899999999999999
Q ss_pred HHHHHHHHHHhcCCcceEEEEEeCCCCH---HHHHHHHc-CCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcc
Q 007402 116 YSEVMALIELCKGQVQLKVVQLTSSMPA---SDLRAALA-GPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 191 (605)
Q Consensus 116 ~~~~~~l~~~~~~~~~i~v~~l~~~~~~---~~~~~~l~-~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad 191 (605)
++.+..+.. .++++..++|+.+. ..+...+. +.++|+|+||+++.+++.. ..+.++++|||||||
T Consensus 81 ~~~~~~~~~-----~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~------~~~~~~~~iViDEaH 149 (414)
T 3oiy_A 81 LERLQKLAD-----EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK------LSQKRFDFVFVDDVD 149 (414)
T ss_dssp HHHHHHHCC-----SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH------HTTCCCSEEEESCHH
T ss_pred HHHHHHHcc-----CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH------hccccccEEEEeChH
Confidence 999998654 27889999999987 33444444 4499999999999888763 456689999999998
Q ss_pred hhcc-----------CCcHHH-HHHHHhhCC-----------CCceEEEEeee-cChhHH-HHHHHhcCCCeEEEcCCcc
Q 007402 192 LLLS-----------YGYEDD-LKALSAVIP-----------RGCQCLLMSAT-SSSDVD-KLKKLILHNPYILTLPEVG 246 (605)
Q Consensus 192 ~i~~-----------~g~~~~-l~~i~~~lp-----------~~~q~il~SAT-l~~~v~-~l~~~~l~~p~~i~l~~~~ 246 (605)
++.. +||..+ +..++..+| ...|+++|||| .+..+. .+...++. +.+..
T Consensus 150 ~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~-- 223 (414)
T 3oiy_A 150 AVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGR-- 223 (414)
T ss_dssp HHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSC--
T ss_pred hhhhccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCc--
Confidence 7653 778888 888888877 78999999999 555543 33333322 11111
Q ss_pred CccccccCCCcEEEEEEccccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEE-EEcCCCCHHHHHHH
Q 007402 247 DVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA-ILNAELPQNSRLHI 325 (605)
Q Consensus 247 ~~~~~~~~~~l~q~~~~~~~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~-~l~~~l~~~~R~~i 325 (605)
......++.+.++.++ +...+..+++. ..+++||||+++..|+.++..|...|+.+. .+||. .|.
T Consensus 224 ---~~~~~~~i~~~~~~~~---~~~~l~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~-- 289 (414)
T 3oiy_A 224 ---LVSVARNITHVRISSR---SKEKLVELLEI--FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN-- 289 (414)
T ss_dssp ---CCCCCCSEEEEEESSC---CHHHHHHHHHH--HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--
T ss_pred ---cccccccchheeeccC---HHHHHHHHHHH--cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--
Confidence 2334557888887664 44555666655 358999999999999999999999999998 88984 444
Q ss_pred HHHHHcCCCcEEEE----cCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCC-ccEEEEeCCC--CCch
Q 007402 326 LEEFNAGLFDYLIA----TDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN-VHTVINFEMP--QNAA 398 (605)
Q Consensus 326 ~~~F~~g~~~iLIa----Td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~-v~~VI~fd~P--~s~~ 398 (605)
++.|++|.++|||| |++++ +|||+|+ |++||+||+| .++.
T Consensus 290 ~~~f~~g~~~vLvat~s~T~~~~---------------------------------~GiDip~~v~~VI~~~~p~~~~~~ 336 (414)
T 3oiy_A 290 FEDFKVGKINILIGVQAYYGKLT---------------------------------RGVDLPERIKYVIFWGTPSGPDVY 336 (414)
T ss_dssp HHHHHTTSCSEEEEECCTTCCCC---------------------------------CCCCCTTTCCEEEEESCCTTTCHH
T ss_pred HHHHhCCCCeEEEEecCcCchhh---------------------------------ccCccccccCEEEEECCCCCCCHH
Confidence 99999999999999 99976 8999999 9999999999 9999
Q ss_pred hHHHhhcccccCC----CCccEEEEeCCchhhHHHHHHHHHh
Q 007402 399 GYVHRIGRTGRAY----NTGASVSLVSPDEMKIFEEIKSFVG 436 (605)
Q Consensus 399 ~yiqRiGRtgR~g----~~G~ai~~v~~~e~~~~~~~~~~l~ 436 (605)
+|+||+|||||.| ..|.+++|+ .+...+..+++.+.
T Consensus 337 ~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 337 TYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 376 (414)
T ss_dssp HHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred HHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhc
Confidence 9999999999988 589999999 55556666666665
No 18
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-50 Score=448.58 Aligned_cols=356 Identities=26% Similarity=0.414 Sum_probs=255.4
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCC--CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCe
Q 007402 24 EEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEG--KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPA 101 (605)
Q Consensus 24 ~~~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~g--kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~ 101 (605)
+...|...++++.++++|.+.||..|+++|.+||+.+++| +++|+.||||||||++|++|+++.+... ..+.+
T Consensus 117 ~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~-----~~~~~ 191 (508)
T 3fho_A 117 XXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDAS-----VPKPQ 191 (508)
T ss_dssp ----------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTT-----CCSCC
T ss_pred ccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhC-----CCCce
Confidence 3455777789999999999999999999999999999998 9999999999999999999999987653 34668
Q ss_pred EEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCC
Q 007402 102 ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS 181 (605)
Q Consensus 102 ~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~ 181 (605)
+||++|+++|+.|+++.+..+.... .+.+....++.. .......++|+|+||+++.+++.... ..+.+
T Consensus 192 vLvl~P~~~L~~Q~~~~~~~~~~~~----~~~~~~~~~~~~----~~~~~~~~~Ivv~T~~~l~~~l~~~~----~~~~~ 259 (508)
T 3fho_A 192 AICLAPSRELARQIMDVVTEMGKYT----EVKTAFGIKDSV----PKGAKIDAQIVIGTPGTVMDLMKRRQ----LDARD 259 (508)
T ss_dssp EEEECSCHHHHHHHHHHHHHHSTTS----SCCEEC--------------CCCCSEEEECHHHHHHHHHTTC----SCCTT
T ss_pred EEEEECcHHHHHHHHHHHHHhCCcc----CeeEEEEeCCcc----cccccCCCCEEEECHHHHHHHHHcCC----ccccC
Confidence 9999999999999999999886543 333333333322 12234478999999999999988764 56788
Q ss_pred ceEEEEeCcchhcc-CCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEE
Q 007402 182 LKILVLDEADLLLS-YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF 260 (605)
Q Consensus 182 l~~lViDEad~i~~-~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~ 260 (605)
+++|||||||.+.+ .+|...+..+...++...|+++||||+++.+..+...++.++..+.+.. .......+.+.
T Consensus 260 ~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~-----~~~~~~~~~~~ 334 (508)
T 3fho_A 260 IKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKT-----EELSVEGIKQL 334 (508)
T ss_dssp CCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCC-----CC----CCCCE
T ss_pred CCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEecc-----ccCCcccceEE
Confidence 99999999999987 6899999999999999999999999999999999999999998887655 33444556666
Q ss_pred EEEcc-ccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEE
Q 007402 261 WISCS-ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIA 339 (605)
Q Consensus 261 ~~~~~-~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIa 339 (605)
++.+. ...+...+..++... ..+++||||+++..|..++..|...++.+..+||+++..+|..+++.|++|.++||||
T Consensus 335 ~~~~~~~~~k~~~l~~ll~~~-~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVa 413 (508)
T 3fho_A 335 YMDCQSEEHKYNVLVELYGLL-TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVT 413 (508)
T ss_dssp EEEC--CHHHHHHHHHHHC----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEE
T ss_pred EEECCchHHHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEe
Confidence 66664 455666666666543 4689999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCC------CCchhHHHhhcccccCCCC
Q 007402 340 TDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP------QNAAGYVHRIGRTGRAYNT 413 (605)
Q Consensus 340 Td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P------~s~~~yiqRiGRtgR~g~~ 413 (605)
|++++ +|||+|++++||+||+| .|+.+|+||+||+||.|+.
T Consensus 414 T~~l~---------------------------------~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~ 460 (508)
T 3fho_A 414 TNVIA---------------------------------RGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRV 460 (508)
T ss_dssp CC--------------------------------------CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----
T ss_pred CChhh---------------------------------cCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCC
Confidence 99976 79999999999999999 8899999999999999999
Q ss_pred ccEEEEeCCc-hhhHHHHHHHHH
Q 007402 414 GASVSLVSPD-EMKIFEEIKSFV 435 (605)
Q Consensus 414 G~ai~~v~~~-e~~~~~~~~~~l 435 (605)
|.+++|+.+. +...+..+++.+
T Consensus 461 g~~i~l~~~~~~~~~~~~i~~~~ 483 (508)
T 3fho_A 461 GVSINFVHDKKSWEEMNAIQEYF 483 (508)
T ss_dssp CEEEEEECTTTSSSSHHHHHHHS
T ss_pred cEEEEEEeChHHHHHHHHHHHHH
Confidence 9999999854 344444444443
No 19
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=1.2e-48 Score=439.98 Aligned_cols=341 Identities=20% Similarity=0.214 Sum_probs=268.3
Q ss_pred CCHHHHHHHH--------HCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEE
Q 007402 33 LDLRLVHALN--------KKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALV 104 (605)
Q Consensus 33 L~~~l~~al~--------~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~Li 104 (605)
||+.+.++++ .+|| .|||+|..+||.+++|+ |+.|+||+|||+||++|++...+. +..++|
T Consensus 61 ld~~l~ea~a~vrea~~r~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~--------g~~vlV 129 (844)
T 1tf5_A 61 TDDLLVEAFAVVREASRRVTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT--------GKGVHV 129 (844)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT--------SSCEEE
T ss_pred hHHHHHHHHHHHHHHHHHHcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc--------CCCEEE
Confidence 5555666665 5899 99999999999999999 999999999999999999966554 457999
Q ss_pred EcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchH-HHHHhcCCC--CCcccCCC
Q 007402 105 LVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCM-PKCLSTGVL--QSKSFSDS 181 (605)
Q Consensus 105 lvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l-~~~l~~~~~--~~~~~l~~ 181 (605)
|+||+|||.|+++++..++.++ ++++..+.|+.+...+... .++||+|+||++| .+++..+.. .....+..
T Consensus 130 ltptreLA~qd~e~~~~l~~~l----gl~v~~i~gg~~~~~r~~~--~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~ 203 (844)
T 1tf5_A 130 VTVNEYLASRDAEQMGKIFEFL----GLTVGLNLNSMSKDEKREA--YAADITYSTNNELGFDYLRDNMVLYKEQMVQRP 203 (844)
T ss_dssp EESSHHHHHHHHHHHHHHHHHT----TCCEEECCTTSCHHHHHHH--HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCC
T ss_pred EeCCHHHHHHHHHHHHHHHhhc----CCeEEEEeCCCCHHHHHHh--cCCCEEEECchhhhHHHHHHhhhcchhhhcccC
Confidence 9999999999999999999987 7899999999887654443 4699999999999 777765431 12356789
Q ss_pred ceEEEEeCcchhc-cCC---------------cHHHHHHHHhhCC---------CCceEE-----------------EEe
Q 007402 182 LKILVLDEADLLL-SYG---------------YEDDLKALSAVIP---------RGCQCL-----------------LMS 219 (605)
Q Consensus 182 l~~lViDEad~i~-~~g---------------~~~~l~~i~~~lp---------~~~q~i-----------------l~S 219 (605)
+.++||||||.|+ +.+ |..++..|+..+| +..|++ |+|
T Consensus 204 ~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfs 283 (844)
T 1tf5_A 204 LHFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFD 283 (844)
T ss_dssp CCEEEEETHHHHHTTTTTCEEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTS
T ss_pred CCEEEECchhhhhhhccccchhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCC
Confidence 9999999999998 554 6789999999997 478888 899
Q ss_pred eecChhHHHHHH-----Hhc-CCCeEE-------EcCCc-cCcc-----------------------ccccCCCcE----
Q 007402 220 ATSSSDVDKLKK-----LIL-HNPYIL-------TLPEV-GDVK-----------------------DEVIPKNVQ---- 258 (605)
Q Consensus 220 ATl~~~v~~l~~-----~~l-~~p~~i-------~l~~~-~~~~-----------------------~~~~~~~l~---- 258 (605)
||++..+..+.. .++ .++..+ .+++. +... +......++
T Consensus 284 at~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~ 363 (844)
T 1tf5_A 284 VKHVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNY 363 (844)
T ss_dssp GGGHHHHHHHHHHHHHHHTCCBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHH
T ss_pred CccchhHHHHHHHHHHHHHhhcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHH
Confidence 998754443322 122 222111 11110 0000 000000000
Q ss_pred -------------------------------------------EEEEEccccchHHHHHHHHHh-hcCCCeEEEEecchh
Q 007402 259 -------------------------------------------QFWISCSERDKLLYILTLLKL-ELVQKKALIFTNTID 294 (605)
Q Consensus 259 -------------------------------------------q~~~~~~~~~k~~~l~~llk~-~~~~~k~IIFv~s~~ 294 (605)
+.++.+...+|+..+...+.. .....++||||+|+.
T Consensus 364 fr~y~kl~GmTGTa~te~~e~~~iY~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~ 443 (844)
T 1tf5_A 364 FRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVE 443 (844)
T ss_dssp HTTSSEEEEEESCCGGGHHHHHHHHCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHH
T ss_pred HHHHhhhccCCcccchhHHHHHHHhCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHH
Confidence 124556778899888877754 234668999999999
Q ss_pred HHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCcccccc
Q 007402 295 MAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEF 374 (605)
Q Consensus 295 ~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (605)
.++.|+..|...|+++.+|||++.+.+|..+.+.|+.| .|+||||+++
T Consensus 444 ~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAg------------------------------ 491 (844)
T 1tf5_A 444 TSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAG------------------------------ 491 (844)
T ss_dssp HHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSS------------------------------
T ss_pred HHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccc------------------------------
Confidence 99999999999999999999999888887666666665 6999999987
Q ss_pred ccccccccC--------CccEEEEeCCCCCchhHHHhhcccccCCCCccEEEEeCCchh
Q 007402 375 GVVRGIDFK--------NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM 425 (605)
Q Consensus 375 gv~rGiD~~--------~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~~v~~~e~ 425 (605)
||+|++ ++.+|||||+|.|.+.|+||+|||||+|.+|.+++|++++|.
T Consensus 492 ---RG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 492 ---RGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp ---TTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred ---cCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 999999 788999999999999999999999999999999999998775
No 20
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=1.4e-46 Score=446.40 Aligned_cols=323 Identities=22% Similarity=0.298 Sum_probs=261.5
Q ss_pred HCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHH
Q 007402 43 KKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMAL 122 (605)
Q Consensus 43 ~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l 122 (605)
.+|| +|||+|.++||.+++|+|+|++||||||||++|++|+++.+. .+.++|||+||++||.|+++.+..+
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~--------~~~~~Lil~PtreLa~Q~~~~l~~l 144 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR--------KGKKSALVFPTVTLVKQTLERLQKL 144 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHT--------TTCCEEEEESSHHHHHHHHHHHHTT
T ss_pred hcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHh--------cCCeEEEEechHHHHHHHHHHHHHh
Confidence 3788 699999999999999999999999999999999888887762 2678999999999999999999986
Q ss_pred HHHhcCCcceEEEEEeCCCCH---HHHHHHHcC-CCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhc----
Q 007402 123 IELCKGQVQLKVVQLTSSMPA---SDLRAALAG-PPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLL---- 194 (605)
Q Consensus 123 ~~~~~~~~~i~v~~l~~~~~~---~~~~~~l~~-~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~---- 194 (605)
. . .++++..++|+.+. ..+...+.. .++|+|+||++|.+++.. ..+.++++|||||||++.
T Consensus 145 ~---~--~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~------l~~~~l~~lViDEaH~l~~~~r 213 (1104)
T 4ddu_A 145 A---D--EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK------LSQKRFDFVFVDDVDAVLKASR 213 (1104)
T ss_dssp S---C--TTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH------HHTSCCSEEEESCHHHHTTSSH
T ss_pred h---C--CCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh------hcccCcCEEEEeCCCccccccc
Confidence 4 2 26889999999876 444555554 499999999999888763 456789999999996544
Q ss_pred ------c-CCcHHH-HHHHHhhCC-----------CCceEEEEeee-cChhHH-HHHHHhcCCCeEEEcCCccCcccccc
Q 007402 195 ------S-YGYEDD-LKALSAVIP-----------RGCQCLLMSAT-SSSDVD-KLKKLILHNPYILTLPEVGDVKDEVI 253 (605)
Q Consensus 195 ------~-~g~~~~-l~~i~~~lp-----------~~~q~il~SAT-l~~~v~-~l~~~~l~~p~~i~l~~~~~~~~~~~ 253 (605)
+ +||..+ +..++..+| ...|+++|||| .+..+. .+....+. +.+.. ....
T Consensus 214 ~~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~-----~~~~ 284 (1104)
T 4ddu_A 214 NIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGR-----LVSV 284 (1104)
T ss_dssp HHHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCB-----CCCC
T ss_pred cchhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEecc-----CCCC
Confidence 4 899988 899999888 88999999999 555543 23333322 22222 2345
Q ss_pred CCCcEEEEEEccccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEE-EEcCCCCHHHHHHHHHHHHcC
Q 007402 254 PKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA-ILNAELPQNSRLHILEEFNAG 332 (605)
Q Consensus 254 ~~~l~q~~~~~~~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~-~l~~~l~~~~R~~i~~~F~~g 332 (605)
..++.+.++.+ ++...+..+++. ..+++||||+++..|+.++.+|...|+.+. .+||. |.. ++.|++|
T Consensus 285 ~~~i~~~~~~~---~k~~~L~~ll~~--~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G 353 (1104)
T 4ddu_A 285 ARNITHVRISS---RSKEKLVELLEI--FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVG 353 (1104)
T ss_dssp CCCEEEEEESC---CCHHHHHHHHHH--HCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHT
T ss_pred cCCceeEEEec---CHHHHHHHHHHh--cCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCC
Confidence 56788888877 455555666665 258999999999999999999999999998 99992 555 9999999
Q ss_pred CCcEEEE----cCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCC-ccEEEEeCCCC------------
Q 007402 333 LFDYLIA----TDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN-VHTVINFEMPQ------------ 395 (605)
Q Consensus 333 ~~~iLIa----Td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~-v~~VI~fd~P~------------ 395 (605)
+++|||| ||+++ ||||+|+ |++|||||+|.
T Consensus 354 ~~~VLVatas~Tdvla---------------------------------rGIDip~~V~~VI~~d~P~~~~Sle~~~~~~ 400 (1104)
T 4ddu_A 354 KINILIGVQAYYGKLT---------------------------------RGVDLPERIKYVIFWGTPSMRFSLELDKAPR 400 (1104)
T ss_dssp SCSEEEEETTTHHHHC---------------------------------CSCCCTTTCCEEEEESCCEEEEECSSSSCCH
T ss_pred CCCEEEEecCCCCeeE---------------------------------ecCcCCCCCCEEEEECCCCCCCCcccccCHH
Confidence 9999999 99976 8999999 99999999998
Q ss_pred ------------------------------------------------------------CchhHHHhhcccccCCCCc-
Q 007402 396 ------------------------------------------------------------NAAGYVHRIGRTGRAYNTG- 414 (605)
Q Consensus 396 ------------------------------------------------------------s~~~yiqRiGRtgR~g~~G- 414 (605)
++.+|+||+|||||.|..|
T Consensus 401 ~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~ 480 (1104)
T 4ddu_A 401 FVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVL 480 (1104)
T ss_dssp HHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCc
Confidence 7889999999999966543
Q ss_pred -cEEEEeCCchhhHHHHHHHHHhhh
Q 007402 415 -ASVSLVSPDEMKIFEEIKSFVGDD 438 (605)
Q Consensus 415 -~ai~~v~~~e~~~~~~~~~~l~~~ 438 (605)
.+++++..+|...++.+++.+...
T Consensus 481 ~~Glsi~~~~d~~~~~~l~~~~~~~ 505 (1104)
T 4ddu_A 481 VKGVSVIFEEDEEIFESLKTRLLLI 505 (1104)
T ss_dssp CCEEEEEECCCHHHHHHHHHHHHHH
T ss_pred ccceEEEEEecHHHHHHHHHHHhhh
Confidence 355555557777777777776643
No 21
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=1.2e-45 Score=411.50 Aligned_cols=333 Identities=19% Similarity=0.204 Sum_probs=202.7
Q ss_pred CCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHH
Q 007402 44 KGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALI 123 (605)
Q Consensus 44 ~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~ 123 (605)
++..+|||+|.++|+.++.|+|+++.+|||||||++|++|+++.+..... ..+.++||++||++|+.|+++.+..++
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~---~~~~~~lil~P~~~L~~q~~~~~~~~~ 79 (556)
T 4a2p_A 3 METKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA---GRKAKVVFLATKVPVYEQQKNVFKHHF 79 (556)
T ss_dssp -----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS---SCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcc---cCCCeEEEEeCCHHHHHHHHHHHHHHh
Confidence 45678999999999999999999999999999999999999998876431 226789999999999999999999988
Q ss_pred HHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcc-cCCCceEEEEeCcchhccCCcHHHH
Q 007402 124 ELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKS-FSDSLKILVLDEADLLLSYGYEDDL 202 (605)
Q Consensus 124 ~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~-~l~~l~~lViDEad~i~~~g~~~~l 202 (605)
... ++++..++|+.+...+...+...++|+|+||+++.+++..+. . .+.++++|||||||++.++++...+
T Consensus 80 ~~~----~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~----~~~~~~~~~vViDEah~~~~~~~~~~~ 151 (556)
T 4a2p_A 80 ERQ----GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGT----LTSLSIFTLMIFDECHNTTGNHPYNVL 151 (556)
T ss_dssp GGG----TCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSS----CCCSTTCSEEEEETGGGCSTTSHHHHH
T ss_pred ccc----CceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCc----ccccccCCEEEEECCcccCCcchHHHH
Confidence 755 578888999887665555566679999999999999998764 4 6788999999999999988754333
Q ss_pred -HHHHhh----CCCCceEEEEeeecCh-----------hHHHHHHHhcCCCeEEEcCCcc--CccccccCCCcEEEE-EE
Q 007402 203 -KALSAV----IPRGCQCLLMSATSSS-----------DVDKLKKLILHNPYILTLPEVG--DVKDEVIPKNVQQFW-IS 263 (605)
Q Consensus 203 -~~i~~~----lp~~~q~il~SATl~~-----------~v~~l~~~~l~~p~~i~l~~~~--~~~~~~~~~~l~q~~-~~ 263 (605)
..++.. .++..|+++||||++. .+..+...+ . +..+...... ... .........+. +.
T Consensus 152 ~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l-~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 228 (556)
T 4a2p_A 152 MTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYL-D-IQAISTVRENIQELQ-RFMNKPEIDVRLVK 228 (556)
T ss_dssp HHHHHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHH-T-CSEEECCCTTHHHHH-HHTCCCCEEEEECC
T ss_pred HHHHHHhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhc-C-CeEecchhcchHHHH-hcCCCCceEEEEcC
Confidence 222221 1356899999999953 122222221 1 1111110000 000 00000000000 00
Q ss_pred --------------------------------------------------------------------------------
Q 007402 264 -------------------------------------------------------------------------------- 263 (605)
Q Consensus 264 -------------------------------------------------------------------------------- 263 (605)
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 308 (556)
T 4a2p_A 229 RRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHL 308 (556)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHH
T ss_pred CCcCChHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence
Q ss_pred -----------------------------------------------------------ccccchHHHHHHHHHhh---c
Q 007402 264 -----------------------------------------------------------CSERDKLLYILTLLKLE---L 281 (605)
Q Consensus 264 -----------------------------------------------------------~~~~~k~~~l~~llk~~---~ 281 (605)
.....|...+..++... .
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~ 388 (556)
T 4a2p_A 309 RKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYN 388 (556)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCC
Confidence 00133555566666543 3
Q ss_pred CCCeEEEEecchhHHHHHHHHHHHc------------CCcEEEEcCCCCHHHHHHHHHHHHc-CCCcEEEEcCCCCcccc
Q 007402 282 VQKKALIFTNTIDMAFRLKLFLEKF------------GIKSAILNAELPQNSRLHILEEFNA-GLFDYLIATDDTQTKEK 348 (605)
Q Consensus 282 ~~~k~IIFv~s~~~~~~L~~~L~~~------------gi~~~~l~~~l~~~~R~~i~~~F~~-g~~~iLIaTd~~~~~~~ 348 (605)
...++||||++++.+..+..+|... |..+..+||+|++.+|..+++.|++ |.++|||||++++
T Consensus 389 ~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~---- 464 (556)
T 4a2p_A 389 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVAD---- 464 (556)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-------
T ss_pred CCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchh----
Confidence 4679999999999999999999875 5666677888999999999999999 9999999999976
Q ss_pred cccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCccEEEEeCCchh
Q 007402 349 DQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM 425 (605)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~~v~~~e~ 425 (605)
+|||+|+|++|||||+|+|+..|+||+|| ||. +.|.+++|+++.+.
T Consensus 465 -----------------------------~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~ 510 (556)
T 4a2p_A 465 -----------------------------EGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 510 (556)
T ss_dssp -------------------------------------CEEEEETCCSCHHHHHHC----------CCEEEEESCHHH
T ss_pred -----------------------------cCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcch
Confidence 89999999999999999999999999999 999 89999999998765
No 22
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=2.1e-45 Score=412.48 Aligned_cols=330 Identities=21% Similarity=0.191 Sum_probs=235.1
Q ss_pred CCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHH
Q 007402 44 KGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALI 123 (605)
Q Consensus 44 ~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~ 123 (605)
+|. .||++|..++|.+++|+ |+.|+||||||+||++|++...+. +..++||+||++||.|+++++..++
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~--------g~~vlVltPTreLA~Q~~e~~~~l~ 139 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALT--------GKGVHVVTVNDYLAQRDAENNRPLF 139 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT--------SSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHc--------CCcEEEEcCCHHHHHHHHHHHHHHH
Confidence 575 89999999999999998 999999999999999999976654 5579999999999999999999999
Q ss_pred HHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchH-HHHHhcCCC--CCcccCCCceEEEEeCcchhc-cC---
Q 007402 124 ELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCM-PKCLSTGVL--QSKSFSDSLKILVLDEADLLL-SY--- 196 (605)
Q Consensus 124 ~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l-~~~l~~~~~--~~~~~l~~l~~lViDEad~i~-~~--- 196 (605)
.++ ++++..++|+.+..... +..++||+|+||+++ .++|..+.. .....++++.++||||||.|+ +.
T Consensus 140 ~~l----gl~v~~i~GG~~~~~r~--~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~t 213 (853)
T 2fsf_A 140 EFL----GLTVGINLPGMPAPAKR--EAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEART 213 (853)
T ss_dssp HHT----TCCEEECCTTCCHHHHH--HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTC
T ss_pred Hhc----CCeEEEEeCCCCHHHHH--HhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcc
Confidence 987 68999999998865433 334699999999999 788886632 123567899999999999998 43
Q ss_pred ------------CcHHHHHHHHhhCCC--------------------CceEE------------------------EEee
Q 007402 197 ------------GYEDDLKALSAVIPR--------------------GCQCL------------------------LMSA 220 (605)
Q Consensus 197 ------------g~~~~l~~i~~~lp~--------------------~~q~i------------------------l~SA 220 (605)
+|..++..|+..+|+ ..|++ |+||
T Consensus 214 pLIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsa 293 (853)
T 2fsf_A 214 PLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSP 293 (853)
T ss_dssp EEEEEEC-------------------------------------------------------------------------
T ss_pred cccccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCc
Confidence 366788888888874 45654 8999
Q ss_pred ecChhHHHHHH-----H-h-------cCCCeEEEcCCcc---------------------Cc--c-ccccCCCcE-----
Q 007402 221 TSSSDVDKLKK-----L-I-------LHNPYILTLPEVG---------------------DV--K-DEVIPKNVQ----- 258 (605)
Q Consensus 221 Tl~~~v~~l~~-----~-~-------l~~p~~i~l~~~~---------------------~~--~-~~~~~~~l~----- 258 (605)
|.+..+..+.. . + ..++.++.+++.. .. . +......++
T Consensus 294 t~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyf 373 (853)
T 2fsf_A 294 ANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYF 373 (853)
T ss_dssp ---------------------------------------------------------------CCCCCEEEEEEEHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHH
Confidence 97653322211 0 1 1111111111000 00 0 001111122
Q ss_pred ------------------------------------------EEEEEccccchHHHHHHHHHhh-cCCCeEEEEecchhH
Q 007402 259 ------------------------------------------QFWISCSERDKLLYILTLLKLE-LVQKKALIFTNTIDM 295 (605)
Q Consensus 259 ------------------------------------------q~~~~~~~~~k~~~l~~llk~~-~~~~k~IIFv~s~~~ 295 (605)
+.++.++..+|+..+...+... ....++||||+|+..
T Consensus 374 r~Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~ 453 (853)
T 2fsf_A 374 RLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEK 453 (853)
T ss_dssp TTSSEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHH
T ss_pred hhhhhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHH
Confidence 1245677888998888877543 345689999999999
Q ss_pred HHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccc
Q 007402 296 AFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFG 375 (605)
Q Consensus 296 ~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 375 (605)
++.|+..|...|+++.+|||.+.+.++..+.+.|+.| .|+||||+++
T Consensus 454 se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAg------------------------------- 500 (853)
T 2fsf_A 454 SELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAG------------------------------- 500 (853)
T ss_dssp HHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCS-------------------------------
T ss_pred HHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEeccccc-------------------------------
Confidence 9999999999999999999999988888888999988 6999999987
Q ss_pred cccccccCCc-------------------------------------cEEEEeCCCCCchhHHHhhcccccCCCCccEEE
Q 007402 376 VVRGIDFKNV-------------------------------------HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVS 418 (605)
Q Consensus 376 v~rGiD~~~v-------------------------------------~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~ 418 (605)
||+||+.. .+|||||+|.|...|+||+|||||+|.+|.+++
T Consensus 501 --RGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~ 578 (853)
T 2fsf_A 501 --RGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRF 578 (853)
T ss_dssp --SCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEE
T ss_pred --CCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEE
Confidence 99999973 599999999999999999999999999999999
Q ss_pred EeCCchh
Q 007402 419 LVSPDEM 425 (605)
Q Consensus 419 ~v~~~e~ 425 (605)
|++.+|.
T Consensus 579 fls~eD~ 585 (853)
T 2fsf_A 579 YLSMEDA 585 (853)
T ss_dssp EEETTSG
T ss_pred EecccHH
Confidence 9998764
No 23
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-45 Score=437.91 Aligned_cols=330 Identities=16% Similarity=0.219 Sum_probs=265.2
Q ss_pred cCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEE
Q 007402 26 KSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVL 105 (605)
Q Consensus 26 ~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~Lil 105 (605)
.+|..+++++.+...+...++..|||+|.+||+.+++|+|+|++||||||||++|.+|+++.+.. +.++||+
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~--------g~rvlvl 233 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN--------KQRVIYT 233 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT--------TCEEEEE
T ss_pred CCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc--------CCeEEEE
Confidence 46788889988888888888889999999999999999999999999999999999999998744 6789999
Q ss_pred cCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEE
Q 007402 106 VPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKIL 185 (605)
Q Consensus 106 vPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~l 185 (605)
+||++|+.|+++.+..++. .+..++|+.+ ....++|+|+||++|.+++..+. ..+.++++|
T Consensus 234 ~PtraLa~Q~~~~l~~~~~--------~VglltGd~~-------~~~~~~IlV~Tpe~L~~~L~~~~----~~l~~l~lV 294 (1108)
T 3l9o_A 234 SPIKALSNQKYRELLAEFG--------DVGLMTGDIT-------INPDAGCLVMTTEILRSMLYRGS----EVMREVAWV 294 (1108)
T ss_dssp ESSHHHHHHHHHHHHHHTS--------SEEEECSSCB-------CCCSCSEEEEEHHHHHHHHHHCS----SHHHHEEEE
T ss_pred cCcHHHHHHHHHHHHHHhC--------CccEEeCccc-------cCCCCCEEEeChHHHHHHHHcCc----cccccCCEE
Confidence 9999999999999988752 4556777765 34578999999999999998874 557889999
Q ss_pred EEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecChhH--HHHHHHhcCCCeEEEcCCccCccccccCCCcEEEEEE
Q 007402 186 VLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDV--DKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWIS 263 (605)
Q Consensus 186 ViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~~~v--~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~ 263 (605)
||||||++.++++...+..++..++...|+++||||+++.. ......+..+|..+.... ..+..+.++++.
T Consensus 295 VIDEaH~l~d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~-------~rp~pl~~~~~~ 367 (1108)
T 3l9o_A 295 IFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTN-------FRPTPLQHYLFP 367 (1108)
T ss_dssp EEETGGGTTSHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEEC-------CCSSCEEEEEEE
T ss_pred EEhhhhhccccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecC-------CCcccceEEEee
Confidence 99999999999999999999999999999999999998754 355555566665554332 112233343332
Q ss_pred ccc-------------------------------------------------------cchHHHHHHHHHhhcCCCeEEE
Q 007402 264 CSE-------------------------------------------------------RDKLLYILTLLKLELVQKKALI 288 (605)
Q Consensus 264 ~~~-------------------------------------------------------~~k~~~l~~llk~~~~~~k~II 288 (605)
... ..+...++..+.. ...+++||
T Consensus 368 ~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~-~~~~~vIV 446 (1108)
T 3l9o_A 368 AHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWK-KKYNPVIV 446 (1108)
T ss_dssp TTSSCCEEEEETTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHH-TTCCCEEE
T ss_pred cCCcceeeeeccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHh-cCCCCEEE
Confidence 110 1112222222222 23569999
Q ss_pred EecchhHHHHHHHHHHHcCCc---------------------------------------EEEEcCCCCHHHHHHHHHHH
Q 007402 289 FTNTIDMAFRLKLFLEKFGIK---------------------------------------SAILNAELPQNSRLHILEEF 329 (605)
Q Consensus 289 Fv~s~~~~~~L~~~L~~~gi~---------------------------------------~~~l~~~l~~~~R~~i~~~F 329 (605)
||+++..|+.++..|...++. +.++||+|++..|..+++.|
T Consensus 447 F~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F 526 (1108)
T 3l9o_A 447 FSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILF 526 (1108)
T ss_dssp EESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHH
T ss_pred EeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHH
Confidence 999999999999988654332 78999999999999999999
Q ss_pred HcCCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCC--------CchhHH
Q 007402 330 NAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQ--------NAAGYV 401 (605)
Q Consensus 330 ~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~--------s~~~yi 401 (605)
.+|.++|||||++++ +|||+|++++||+++.|. |+.+|+
T Consensus 527 ~~G~ikVLVAT~vla---------------------------------~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyi 573 (1108)
T 3l9o_A 527 QEGFLKVLFATETFS---------------------------------IGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYI 573 (1108)
T ss_dssp HHTCCCEEEEESCCC---------------------------------SCCCC--CEEEESCSEEESSSCEEECCHHHHH
T ss_pred hCCCCeEEEECcHHh---------------------------------cCCCCCCceEEEecCcccCccccccCCHHHHH
Confidence 999999999999977 799999999999877643 666799
Q ss_pred HhhcccccCC--CCccEEEEeCCc
Q 007402 402 HRIGRTGRAY--NTGASVSLVSPD 423 (605)
Q Consensus 402 qRiGRtgR~g--~~G~ai~~v~~~ 423 (605)
||+|||||.| ..|.+++++.+.
T Consensus 574 Qr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 574 QMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp HHHHHSCCSSSCSSEEEEEEECCC
T ss_pred HhhcccCCCCCCCceEEEEEecCC
Confidence 9999999999 578888888765
No 24
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=5.2e-45 Score=409.55 Aligned_cols=331 Identities=20% Similarity=0.184 Sum_probs=265.0
Q ss_pred HCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHH
Q 007402 43 KKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMAL 122 (605)
Q Consensus 43 ~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l 122 (605)
.+|+ .||++|..++|.+++|+ |+.|+||+|||++|++|++...+. +..++||+||++||.|+++++..+
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~--------g~~v~VvTpTreLA~Qdae~m~~l 175 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA--------GNGVHIVTVNDYLAKRDSEWMGRV 175 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT--------TSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh--------CCCeEEEeCCHHHHHHHHHHHHHH
Confidence 3799 99999999999999998 999999999999999999876665 456999999999999999999999
Q ss_pred HHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchH-HHHHhcCCC--CCcccCCCceEEEEeCcchhcc----
Q 007402 123 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCM-PKCLSTGVL--QSKSFSDSLKILVLDEADLLLS---- 195 (605)
Q Consensus 123 ~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l-~~~l~~~~~--~~~~~l~~l~~lViDEad~i~~---- 195 (605)
+.++ ++++..+.|+.+...... ...+||+|+||++| .++|..+.. .....+..+.++||||||.|+.
T Consensus 176 ~~~l----GLsv~~i~gg~~~~~r~~--~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDear 249 (922)
T 1nkt_A 176 HRFL----GLQVGVILATMTPDERRV--AYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEAR 249 (922)
T ss_dssp HHHT----TCCEEECCTTCCHHHHHH--HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGG
T ss_pred Hhhc----CCeEEEEeCCCCHHHHHH--hcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCc
Confidence 9987 789999999988654443 34689999999999 788876532 1236678899999999999983
Q ss_pred ------------CCcHHHHHHHHhhCC---------CCceEE-----------------EEeeecChhHHHHHH------
Q 007402 196 ------------YGYEDDLKALSAVIP---------RGCQCL-----------------LMSATSSSDVDKLKK------ 231 (605)
Q Consensus 196 ------------~g~~~~l~~i~~~lp---------~~~q~i-----------------l~SATl~~~v~~l~~------ 231 (605)
.+|..++..|+..+| +..|++ |+|||.+..+..+..
T Consensus 250 tPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~ 329 (922)
T 1nkt_A 250 TPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKE 329 (922)
T ss_dssp SCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHH
T ss_pred cceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHH
Confidence 257889999999998 788998 899998764433321
Q ss_pred HhcC-------CCeEEEcCCcc-Ccc-----------------------ccccCCCcE----------------------
Q 007402 232 LILH-------NPYILTLPEVG-DVK-----------------------DEVIPKNVQ---------------------- 258 (605)
Q Consensus 232 ~~l~-------~p~~i~l~~~~-~~~-----------------------~~~~~~~l~---------------------- 258 (605)
++-. ++.++.+++.. ... +......++
T Consensus 330 l~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~ 409 (922)
T 1nkt_A 330 LFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEA 409 (922)
T ss_dssp HCCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGH
T ss_pred HhhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHH
Confidence 1222 23333332210 000 000000111
Q ss_pred -------------------------EEEEEccccchHHHHHHHHHhh-cCCCeEEEEecchhHHHHHHHHHHHcCCcEEE
Q 007402 259 -------------------------QFWISCSERDKLLYILTLLKLE-LVQKKALIFTNTIDMAFRLKLFLEKFGIKSAI 312 (605)
Q Consensus 259 -------------------------q~~~~~~~~~k~~~l~~llk~~-~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~ 312 (605)
+.++.++..+|+..+...+... ....++||||+|++.++.|+..|...|+++.+
T Consensus 410 ~Ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~v 489 (922)
T 1nkt_A 410 AELHEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNV 489 (922)
T ss_dssp HHHHHHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEE
T ss_pred HHHHHHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEE
Confidence 1245567788998888777543 34568999999999999999999999999999
Q ss_pred EcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCc-------
Q 007402 313 LNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV------- 385 (605)
Q Consensus 313 l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v------- 385 (605)
|||.+.+.++..+.+.|+.| .|+||||+++ ||+||+.+
T Consensus 490 Lnak~~~rEa~iia~agr~G--~VtIATnmAg---------------------------------RGtDI~l~~~~~~~~ 534 (922)
T 1nkt_A 490 LNAKYHEQEATIIAVAGRRG--GVTVATNMAG---------------------------------RGTDIVLGGNVDFLT 534 (922)
T ss_dssp ECSSCHHHHHHHHHTTTSTT--CEEEEETTCS---------------------------------TTCCCCTTCCHHHHH
T ss_pred ecCChhHHHHHHHHhcCCCC--eEEEecchhh---------------------------------cCccccCCCCHHHHH
Confidence 99999888887788888888 6999999987 99999975
Q ss_pred ---------------------------------------------cEEEEeCCCCCchhHHHhhcccccCCCCccEEEEe
Q 007402 386 ---------------------------------------------HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLV 420 (605)
Q Consensus 386 ---------------------------------------------~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~~v 420 (605)
.+|||||+|.|...|+||+|||||+|.+|.+++|+
T Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~ffl 614 (922)
T 1nkt_A 535 DQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYL 614 (922)
T ss_dssp HHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEE
T ss_pred HHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEe
Confidence 59999999999999999999999999999999999
Q ss_pred CCchh
Q 007402 421 SPDEM 425 (605)
Q Consensus 421 ~~~e~ 425 (605)
+.+|.
T Consensus 615 SleD~ 619 (922)
T 1nkt_A 615 SLGDE 619 (922)
T ss_dssp ETTSH
T ss_pred chhHH
Confidence 98775
No 25
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=3.4e-45 Score=407.35 Aligned_cols=337 Identities=21% Similarity=0.219 Sum_probs=228.9
Q ss_pred CChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHHhc
Q 007402 48 KPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCK 127 (605)
Q Consensus 48 ~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~ 127 (605)
+|+|+|.++|+.++.|+|+++.+|||||||++|++|+++.+..... ..+.++||++||++|+.|+++.+..++...
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~---~~~~~~lil~P~~~L~~q~~~~~~~~~~~~- 79 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPC---GQKGKVVFFANQIPVYEQQATVFSRYFERL- 79 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS---SCCCCEEEECSSHHHHHHHHHHHHHHHHTT-
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhccc---CCCCEEEEEeCCHHHHHHHHHHHHHHhccC-
Confidence 6999999999999999999999999999999999999998876421 236789999999999999999999988765
Q ss_pred CCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCc-HHHHHHHH
Q 007402 128 GQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGY-EDDLKALS 206 (605)
Q Consensus 128 ~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~-~~~l~~i~ 206 (605)
++++..++|+.....+...+..+++|+|+||+++..++..+.+ ..+.++++|||||||++.+.+. ...+...+
T Consensus 80 ---~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~---~~~~~~~~vViDEah~~~~~~~~~~~~~~~~ 153 (555)
T 3tbk_A 80 ---GYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAI---PSLSVFTLMIFDECHNTSKNHPYNQIMFRYL 153 (555)
T ss_dssp ---TCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSS---CCGGGCSEEEETTGGGCSTTCHHHHHHHHHH
T ss_pred ---CcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcc---cccccCCEEEEECccccCCcchHHHHHHHHH
Confidence 6788889998865554455555799999999999999987641 2678899999999999988753 33333333
Q ss_pred hhC-----CCCceEEEEeeecChh--------HHHHHHHh--cCCCeEEEcCCc-cCccccccCCCcEEEEEE-------
Q 007402 207 AVI-----PRGCQCLLMSATSSSD--------VDKLKKLI--LHNPYILTLPEV-GDVKDEVIPKNVQQFWIS------- 263 (605)
Q Consensus 207 ~~l-----p~~~q~il~SATl~~~--------v~~l~~~~--l~~p~~i~l~~~-~~~~~~~~~~~l~q~~~~------- 263 (605)
... ....|+++||||++.. ...+..+. +..+.+...... ................+.
T Consensus 154 ~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 233 (555)
T 3tbk_A 154 DHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTF 233 (555)
T ss_dssp HHHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHH
T ss_pred HhhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChH
Confidence 322 2457999999999542 12221111 111111111100 000000000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 007402 264 -------------------------------------------------------------------------------- 263 (605)
Q Consensus 264 -------------------------------------------------------------------------------- 263 (605)
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 313 (555)
T 3tbk_A 234 KCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDA 313 (555)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred -----------------------------------------------------ccccchHHHHHHHHHhh---cCCCeEE
Q 007402 264 -----------------------------------------------------CSERDKLLYILTLLKLE---LVQKKAL 287 (605)
Q Consensus 264 -----------------------------------------------------~~~~~k~~~l~~llk~~---~~~~k~I 287 (605)
.....|...+..++... ...+++|
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~l 393 (555)
T 3tbk_A 314 LIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTI 393 (555)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEE
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEE
Confidence 00133555555555532 2358999
Q ss_pred EEecchhHHHHHHHHHHHcC------------CcEEEEcCCCCHHHHHHHHHHHHc-CCCcEEEEcCCCCcccccccCCC
Q 007402 288 IFTNTIDMAFRLKLFLEKFG------------IKSAILNAELPQNSRLHILEEFNA-GLFDYLIATDDTQTKEKDQSDEG 354 (605)
Q Consensus 288 IFv~s~~~~~~L~~~L~~~g------------i~~~~l~~~l~~~~R~~i~~~F~~-g~~~iLIaTd~~~~~~~~~~~~~ 354 (605)
|||++++.+..+..+|...+ .....+||+|++.+|..++++|++ |.++|||||++++
T Consensus 394 VF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~---------- 463 (555)
T 3tbk_A 394 LFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVAD---------- 463 (555)
T ss_dssp EECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTT----------
T ss_pred EEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhh----------
Confidence 99999999999999999874 344455669999999999999999 9999999999977
Q ss_pred CCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCccEEEEeCCchhhHHH
Q 007402 355 GHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFE 429 (605)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~~v~~~e~~~~~ 429 (605)
+|||+|+|++||+||+|+|+..|+||+|| ||. +.|.+++|+++.+.....
T Consensus 464 -----------------------~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~ 513 (555)
T 3tbk_A 464 -----------------------EGIDIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKE 513 (555)
T ss_dssp -----------------------CCEETTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHH
T ss_pred -----------------------cCCccccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHH
Confidence 89999999999999999999999999999 999 899999999987664443
No 26
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=1e-45 Score=424.10 Aligned_cols=348 Identities=22% Similarity=0.223 Sum_probs=224.4
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHH
Q 007402 38 VHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYS 117 (605)
Q Consensus 38 ~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~ 117 (605)
.++|..+||..|+++|.++|+.+++|+|+|+.+|||+|||++|++|+++.+..... ..+.++|||+||++|+.|+++
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~---~~~~~~lvl~Pt~~L~~Q~~~ 79 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ---GQKGKVVFFANQIPVYEQNKS 79 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCT---TCCCCEEEECSSHHHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCcc---CCCCeEEEEECCHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999998876431 224689999999999999999
Q ss_pred HHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCC
Q 007402 118 EVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYG 197 (605)
Q Consensus 118 ~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g 197 (605)
.+..++... ++++..++|+.+...+...+...++|+|+||++|.+++..+.+ ..+.++++|||||||++....
T Consensus 80 ~~~~~~~~~----~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~---~~l~~~~~vViDEaH~~~~~~ 152 (696)
T 2ykg_A 80 VFSKYFERH----GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI---PSLSIFTLMIFDECHNTSKQH 152 (696)
T ss_dssp HHHHHTTTT----TCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSS---CCGGGCSEEEEETGGGCSTTC
T ss_pred HHHHHhccC----CceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcc---cccccccEEEEeCCCcccCcc
Confidence 999887533 6788888988765444444555799999999999999987641 257889999999999988654
Q ss_pred -cHHHHHHHHhh-----CCCCceEEEEeeecC--------hhHHHHHHHh---------------------cCCCeEEEc
Q 007402 198 -YEDDLKALSAV-----IPRGCQCLLMSATSS--------SDVDKLKKLI---------------------LHNPYILTL 242 (605)
Q Consensus 198 -~~~~l~~i~~~-----lp~~~q~il~SATl~--------~~v~~l~~~~---------------------l~~p~~i~l 242 (605)
|...+...+.. .+...|+++||||+. +.+..+.... ...|.....
T Consensus 153 ~~~~i~~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~ 232 (696)
T 2ykg_A 153 PYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFR 232 (696)
T ss_dssp HHHHHHHHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEE
T ss_pred cHHHHHHHHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEE
Confidence 22333222222 246789999999996 2222232221 111211100
Q ss_pred CCccCcc--------------------------------c----------------------------------------
Q 007402 243 PEVGDVK--------------------------------D---------------------------------------- 250 (605)
Q Consensus 243 ~~~~~~~--------------------------------~---------------------------------------- 250 (605)
....... .
T Consensus 233 ~~~~~~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 312 (696)
T 2ykg_A 233 KVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLY 312 (696)
T ss_dssp ECCCCSCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHH
T ss_pred ecCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHH
Confidence 0000000 0
Q ss_pred ----------------------------------cccCCCcEEEEEE---------------c-cccchHHHHHHHHHhh
Q 007402 251 ----------------------------------EVIPKNVQQFWIS---------------C-SERDKLLYILTLLKLE 280 (605)
Q Consensus 251 ----------------------------------~~~~~~l~q~~~~---------------~-~~~~k~~~l~~llk~~ 280 (605)
......+.+.+.. + ....|...+..++...
T Consensus 313 ~~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~ 392 (696)
T 2ykg_A 313 TSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEE 392 (696)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 0000001111110 0 1345777777777654
Q ss_pred c---CCCeEEEEecchhHHHHHHHHHHHcC----CcEEEE--------cCCCCHHHHHHHHHHHHc-CCCcEEEEcCCCC
Q 007402 281 L---VQKKALIFTNTIDMAFRLKLFLEKFG----IKSAIL--------NAELPQNSRLHILEEFNA-GLFDYLIATDDTQ 344 (605)
Q Consensus 281 ~---~~~k~IIFv~s~~~~~~L~~~L~~~g----i~~~~l--------~~~l~~~~R~~i~~~F~~-g~~~iLIaTd~~~ 344 (605)
. ..+++||||+++..+..++.+|...| +++..+ ||+|++.+|..++++|++ |.++|||||++++
T Consensus 393 ~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~ 472 (696)
T 2ykg_A 393 YHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVAD 472 (696)
T ss_dssp HTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSC
T ss_pred hccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhh
Confidence 2 46799999999999999999999988 888888 569999999999999998 9999999999987
Q ss_pred cccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCccEEEEeCCch
Q 007402 345 TKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE 424 (605)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~~v~~~e 424 (605)
+|||+|+|++||+||+|+|+.+|+||+|| ||. +.|.++.|++..+
T Consensus 473 ---------------------------------~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~ 517 (696)
T 2ykg_A 473 ---------------------------------EGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAG 517 (696)
T ss_dssp ---------------------------------CC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHH
T ss_pred ---------------------------------cCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCC
Confidence 79999999999999999999999999999 998 7899999998876
Q ss_pred hhHHHH
Q 007402 425 MKIFEE 430 (605)
Q Consensus 425 ~~~~~~ 430 (605)
......
T Consensus 518 ~~~~~~ 523 (696)
T 2ykg_A 518 VIEKEQ 523 (696)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 644333
No 27
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=1.8e-45 Score=436.87 Aligned_cols=341 Identities=18% Similarity=0.211 Sum_probs=268.8
Q ss_pred cCcccCCCCHHHH-----HHHH-HCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCC
Q 007402 26 KSFEELGLDLRLV-----HALN-KKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLA 99 (605)
Q Consensus 26 ~~f~~~~L~~~l~-----~al~-~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~ 99 (605)
..|...++++.+. +.+. .+||. | ++|.++||.+++|+|+++.||||||||+ |++|++..+.. .+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~-------~~ 99 (1054)
T 1gku_B 30 AAASLCLFPEDFLLKEFVEFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL-------KG 99 (1054)
T ss_dssp ECCCCSCCTTHHHHHHHHHHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT-------TS
T ss_pred ccccccccccccchHHHHHHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh-------cC
Confidence 3455555554433 4444 48999 9 9999999999999999999999999998 99999988765 26
Q ss_pred CeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHH---HHHHcCCCcEEEECCchHHHHHhcCCCCCc
Q 007402 100 PAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL---RAALAGPPDIVIATPGCMPKCLSTGVLQSK 176 (605)
Q Consensus 100 ~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~---~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~ 176 (605)
+++|||+||++||.|+++.+..++..++-....++..++|+.+...+ ...+.. ++|+|+||++|.+++..
T Consensus 100 ~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~------ 172 (1054)
T 1gku_B 100 KRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE------ 172 (1054)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT------
T ss_pred CeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH------
Confidence 78999999999999999999998865521111278889998877653 333445 99999999999987653
Q ss_pred ccCCCceEEEEeCcchhccCCcHHHHHHHHhhC-----------CCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCc
Q 007402 177 SFSDSLKILVLDEADLLLSYGYEDDLKALSAVI-----------PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEV 245 (605)
Q Consensus 177 ~~l~~l~~lViDEad~i~~~g~~~~l~~i~~~l-----------p~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~ 245 (605)
+.++++|||||||+|+++ ..++..++..+ +...|++++|||++.. ..+...++.++..+.+..
T Consensus 173 --L~~l~~lViDEah~~l~~--~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~- 246 (1054)
T 1gku_B 173 --LGHFDFIFVDDVDAILKA--SKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGS- 246 (1054)
T ss_dssp --SCCCSEEEESCHHHHHTS--THHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSC-
T ss_pred --hccCCEEEEeChhhhhhc--cccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccC-
Confidence 458999999999999985 56777777766 4578999999999987 544444444444444333
Q ss_pred cCccccccCCCcEEEEEEccccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHH
Q 007402 246 GDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 325 (605)
Q Consensus 246 ~~~~~~~~~~~l~q~~~~~~~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i 325 (605)
......++.++++ +.++...+..+++.. .+++||||+++..|+.++..|... +.+..+||++. .+
T Consensus 247 ----~~~~~~~i~~~~~---~~~k~~~L~~ll~~~--~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~-----~~ 311 (1054)
T 1gku_B 247 ----SRITVRNVEDVAV---NDESISTLSSILEKL--GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKK-----GD 311 (1054)
T ss_dssp ----CEECCCCEEEEEE---SCCCTTTTHHHHTTS--CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSS-----HH
T ss_pred ----cccCcCCceEEEe---chhHHHHHHHHHhhc--CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHH-----HH
Confidence 2334456777777 355666666776643 678999999999999999999988 99999999983 78
Q ss_pred HHHHHcCCCcEEEE----cCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCc-cEEEEeCCC------
Q 007402 326 LEEFNAGLFDYLIA----TDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV-HTVINFEMP------ 394 (605)
Q Consensus 326 ~~~F~~g~~~iLIa----Td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v-~~VI~fd~P------ 394 (605)
++.|++|.++|||| ||+++ ||||+|+| ++|||||+|
T Consensus 312 l~~F~~G~~~VLVaTas~Tdv~~---------------------------------rGIDip~VI~~VI~~~~P~~~~~~ 358 (1054)
T 1gku_B 312 YEKFVEGEIDHLIGTAHYYGTLV---------------------------------RGLDLPERIRFAVFVGCPSFRVTI 358 (1054)
T ss_dssp HHHHHHTSCSEEEEECC---------------------------------------CCSCCTTTCCEEEEESCCEEEEEC
T ss_pred HHHHHcCCCcEEEEecCCCCeeE---------------------------------eccccCCcccEEEEeCCCcccccc
Confidence 89999999999999 89876 89999996 999999999
Q ss_pred -----------------------------------------------------------------CCchhHHHhhccccc
Q 007402 395 -----------------------------------------------------------------QNAAGYVHRIGRTGR 409 (605)
Q Consensus 395 -----------------------------------------------------------------~s~~~yiqRiGRtgR 409 (605)
.|..+|+||+|||||
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR 438 (1054)
T 1gku_B 359 EDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSR 438 (1054)
T ss_dssp SCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCC
T ss_pred cccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCcHHHHhhhhchhhh
Confidence 789999999999999
Q ss_pred CCCCc--cEEEEeCCchhhHHHHHHHHHhh
Q 007402 410 AYNTG--ASVSLVSPDEMKIFEEIKSFVGD 437 (605)
Q Consensus 410 ~g~~G--~ai~~v~~~e~~~~~~~~~~l~~ 437 (605)
.|..| .+++|+...+...+..+++.+..
T Consensus 439 ~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 439 LFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp EETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred ccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 88876 48999988888777777777765
No 28
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=5.2e-44 Score=411.23 Aligned_cols=334 Identities=22% Similarity=0.259 Sum_probs=263.1
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHH-HhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeE
Q 007402 24 EEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPL-ILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAA 102 (605)
Q Consensus 24 ~~~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~-~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~ 102 (605)
+..+|++++|++.+.+.+...||.+|+|+|.++|+. ++++++++++||||||||.+|.+|+++.+... +.++
T Consensus 6 ~~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------~~~i 78 (715)
T 2va8_A 6 EWMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN-------GGKA 78 (715)
T ss_dssp CCCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-------CSEE
T ss_pred ccCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC-------CCeE
Confidence 346899999999999999999999999999999998 78899999999999999999999999987742 5689
Q ss_pred EEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCc
Q 007402 103 LVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSL 182 (605)
Q Consensus 103 LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l 182 (605)
+|++|+++|+.|+++.++.+.. . ++++..++|+...... .+ ..++|+|+||+++..++..+. ..++++
T Consensus 79 l~i~P~r~La~q~~~~~~~~~~-~----g~~v~~~~G~~~~~~~--~~-~~~~Iiv~Tpe~l~~~~~~~~----~~l~~~ 146 (715)
T 2va8_A 79 IYVTPLRALTNEKYLTFKDWEL-I----GFKVAMTSGDYDTDDA--WL-KNYDIIITTYEKLDSLWRHRP----EWLNEV 146 (715)
T ss_dssp EEECSCHHHHHHHHHHHGGGGG-G----TCCEEECCSCSSSCCG--GG-GGCSEEEECHHHHHHHHHHCC----GGGGGE
T ss_pred EEEeCcHHHHHHHHHHHHHhhc-C----CCEEEEEeCCCCCchh--hc-CCCCEEEEcHHHHHHHHhCCh----hHhhcc
Confidence 9999999999999999854422 1 5778888887543221 12 378999999999999888753 557899
Q ss_pred eEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEEE-
Q 007402 183 KILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW- 261 (605)
Q Consensus 183 ~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~- 261 (605)
++|||||||.+.+.++...+..++..++ ..|+++||||+++ .+.+...+ ..+. +.... .+..+...+
T Consensus 147 ~~vIiDE~H~l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n-~~~~~~~l-~~~~-~~~~~--------r~~~l~~~~~ 214 (715)
T 2va8_A 147 NYFVLDELHYLNDPERGPVVESVTIRAK-RRNLLALSATISN-YKQIAKWL-GAEP-VATNW--------RPVPLIEGVI 214 (715)
T ss_dssp EEEEECSGGGGGCTTTHHHHHHHHHHHH-TSEEEEEESCCTT-HHHHHHHH-TCEE-EECCC--------CSSCEEEEEE
T ss_pred CEEEEechhhcCCcccchHHHHHHHhcc-cCcEEEEcCCCCC-HHHHHHHh-CCCc-cCCCC--------CCCCceEEEE
Confidence 9999999999988888888988888777 7999999999986 34555543 2221 21111 011111111
Q ss_pred -----------EEcc--------ccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcC---------------
Q 007402 262 -----------ISCS--------ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFG--------------- 307 (605)
Q Consensus 262 -----------~~~~--------~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~g--------------- 307 (605)
...+ .......+...+. ..+++||||+++..|+.++..|....
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~ 291 (715)
T 2va8_A 215 YPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSLS---KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILK 291 (715)
T ss_dssp EECSSTTEEEEEETTSCEEEEESSSHHHHHHHHHHT---TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHH
T ss_pred ecCCcccceeeecCcchhhhcccchHHHHHHHHHHh---cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHH
Confidence 1111 1233344444433 46899999999999999999998642
Q ss_pred ---------------------CcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCcccccccCCC
Q 007402 308 ---------------------IKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHP 366 (605)
Q Consensus 308 ---------------------i~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (605)
..+.++||+|+..+|..+++.|.+|..+|||||++++
T Consensus 292 ~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~---------------------- 349 (715)
T 2va8_A 292 QLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLA---------------------- 349 (715)
T ss_dssp HHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGG----------------------
T ss_pred HHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHh----------------------
Confidence 2489999999999999999999999999999999977
Q ss_pred CCccccccccccccccCCccEEEE----eC-------CCCCchhHHHhhcccccCC--CCccEEEEeCCch
Q 007402 367 KAKLDSEFGVVRGIDFKNVHTVIN----FE-------MPQNAAGYVHRIGRTGRAY--NTGASVSLVSPDE 424 (605)
Q Consensus 367 ~~~~~~~~gv~rGiD~~~v~~VI~----fd-------~P~s~~~yiqRiGRtgR~g--~~G~ai~~v~~~e 424 (605)
+|||+|++++||+ || .|.|..+|+||+||+||.| ..|.|+.++++.+
T Consensus 350 -----------~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 350 -----------AGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp -----------GSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGG
T ss_pred -----------cccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCch
Confidence 7999999999999 99 8999999999999999988 4899999998765
No 29
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=2.9e-44 Score=413.60 Aligned_cols=333 Identities=25% Similarity=0.328 Sum_probs=269.0
Q ss_pred cCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHH-HhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEE
Q 007402 26 KSFEELGLDLRLVHALNKKGIQKPTLIQQASIPL-ILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALV 104 (605)
Q Consensus 26 ~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~-~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~Li 104 (605)
++|++++|++++.+.+...||.+|+|+|.++|+. ++.|++++++||||||||++|.+|+++.+... +.++||
T Consensus 1 ~~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------~~~~l~ 73 (720)
T 2zj8_A 1 MRVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ-------GGKAVY 73 (720)
T ss_dssp CBGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH-------CSEEEE
T ss_pred CcHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-------CCEEEE
Confidence 3699999999999999999999999999999998 88999999999999999999999999988742 568999
Q ss_pred EcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceE
Q 007402 105 LVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKI 184 (605)
Q Consensus 105 lvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~ 184 (605)
++|+++|+.|+++.+..+... ++++..++|+...... ....++|+|+||+++..++.... ..++++++
T Consensus 74 i~P~raLa~q~~~~~~~l~~~-----g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~----~~l~~~~~ 141 (720)
T 2zj8_A 74 IVPLKALAEEKFQEFQDWEKI-----GLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGS----SWIKDVKI 141 (720)
T ss_dssp ECSSGGGHHHHHHHTGGGGGG-----TCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTC----TTGGGEEE
T ss_pred EcCcHHHHHHHHHHHHHHHhc-----CCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcCh----hhhhcCCE
Confidence 999999999999998654321 6788888887653321 12478999999999999888753 55789999
Q ss_pred EEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEEEE--
Q 007402 185 LVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWI-- 262 (605)
Q Consensus 185 lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~-- 262 (605)
|||||||++.++++...+..++..++...|+++||||+++ ...+...+ ..+ .+... ..+..+...+.
T Consensus 142 vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n-~~~~~~~l-~~~-~~~~~--------~rp~~l~~~~~~~ 210 (720)
T 2zj8_A 142 LVADEIHLIGSRDRGATLEVILAHMLGKAQIIGLSATIGN-PEELAEWL-NAE-LIVSD--------WRPVKLRRGVFYQ 210 (720)
T ss_dssp EEEETGGGGGCTTTHHHHHHHHHHHBTTBEEEEEECCCSC-HHHHHHHT-TEE-EEECC--------CCSSEEEEEEEET
T ss_pred EEEECCcccCCCcccHHHHHHHHHhhcCCeEEEEcCCcCC-HHHHHHHh-CCc-ccCCC--------CCCCcceEEEEeC
Confidence 9999999999888899999999888778999999999986 34555443 221 11111 01111222111
Q ss_pred ----Ecc-----ccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHc---------------------------
Q 007402 263 ----SCS-----ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKF--------------------------- 306 (605)
Q Consensus 263 ----~~~-----~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~--------------------------- 306 (605)
... ...+...+...+. ..+++||||+++..|+.++..|.+.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 287 (720)
T 2zj8_A 211 GFVTWEDGSIDRFSSWEELVYDAIR---KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNE 287 (720)
T ss_dssp TEEEETTSCEEECSSTTHHHHHHHH---TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHH
T ss_pred CeeeccccchhhhhHHHHHHHHHHh---CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchH
Confidence 111 2234444444443 3689999999999999999988753
Q ss_pred ------CCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCcccccccccccc
Q 007402 307 ------GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 380 (605)
Q Consensus 307 ------gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGi 380 (605)
...+..+||+|+..+|..+++.|++|.++|||||++++ +||
T Consensus 288 ~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~---------------------------------~Gv 334 (720)
T 2zj8_A 288 KLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLS---------------------------------AGI 334 (720)
T ss_dssp HHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTG---------------------------------GGC
T ss_pred HHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhh---------------------------------ccC
Confidence 12489999999999999999999999999999999977 799
Q ss_pred ccCCccEEEE----eC----CCCCchhHHHhhcccccCC--CCccEEEEeCCch
Q 007402 381 DFKNVHTVIN----FE----MPQNAAGYVHRIGRTGRAY--NTGASVSLVSPDE 424 (605)
Q Consensus 381 D~~~v~~VI~----fd----~P~s~~~yiqRiGRtgR~g--~~G~ai~~v~~~e 424 (605)
|+|++++||+ || .|.|..+|+||+||+||.| ..|.|+.++++.+
T Consensus 335 dip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 388 (720)
T 2zj8_A 335 NTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDD 388 (720)
T ss_dssp CCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSC
T ss_pred CCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCcc
Confidence 9999999999 77 5899999999999999988 5899999998876
No 30
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=8.8e-44 Score=413.71 Aligned_cols=338 Identities=20% Similarity=0.208 Sum_probs=209.5
Q ss_pred HCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHH
Q 007402 43 KKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMAL 122 (605)
Q Consensus 43 ~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l 122 (605)
-+|+..|+|+|.++|+.++.|+|+|+.+|||||||++|++|+++.+..... ..+.++||||||++|+.|+++.+..+
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~---~~~~~~Lvl~Pt~~L~~Q~~~~~~~~ 319 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA---GRKAKVVFLATKVPVYEQQKNVFKHH 319 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS---SCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccc---cCCCeEEEEeCCHHHHHHHHHHHHHh
Confidence 468999999999999999999999999999999999999999998876421 23678999999999999999999998
Q ss_pred HHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCcH-HH
Q 007402 123 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE-DD 201 (605)
Q Consensus 123 ~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~-~~ 201 (605)
+... ++++..++|+.+...+...+...++|+|+||+++.+++..+.+ ..+.++++|||||||++...+.. ..
T Consensus 320 ~~~~----~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~---~~~~~~~~iViDEaH~~~~~~~~~~i 392 (797)
T 4a2q_A 320 FERQ----GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTL---TSLSIFTLMIFDECHNTTGNHPYNVL 392 (797)
T ss_dssp HGGG----TCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSC---CCGGGCSEEEETTGGGCSTTSHHHHH
T ss_pred cccC----CceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccc---cccccCCEEEEECccccCCCccHHHH
Confidence 8655 6788999999876665566667899999999999999987641 26788999999999999876533 22
Q ss_pred HHHHHhh----CCCCceEEEEeeecCh-----------hHHHHHHHh------------------cCCCeEE--EcCCcc
Q 007402 202 LKALSAV----IPRGCQCLLMSATSSS-----------DVDKLKKLI------------------LHNPYIL--TLPEVG 246 (605)
Q Consensus 202 l~~i~~~----lp~~~q~il~SATl~~-----------~v~~l~~~~------------------l~~p~~i--~l~~~~ 246 (605)
+..+... ..+..|+++||||++. .+..+...+ +..|... ......
T Consensus 393 ~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 472 (797)
T 4a2q_A 393 MTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRI 472 (797)
T ss_dssp HHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCS
T ss_pred HHHHHHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCC
Confidence 3233322 1456899999999952 222222211 1111111 000000
Q ss_pred Ccc-----------------ccccCCCcEEE------------EE-E---------------------------------
Q 007402 247 DVK-----------------DEVIPKNVQQF------------WI-S--------------------------------- 263 (605)
Q Consensus 247 ~~~-----------------~~~~~~~l~q~------------~~-~--------------------------------- 263 (605)
... .......+... ++ .
T Consensus 473 ~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 552 (797)
T 4a2q_A 473 HNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKY 552 (797)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Confidence 000 00000000000 00 0
Q ss_pred --------------------------------------------------------ccccchHHHHHHHHHhh---cCCC
Q 007402 264 --------------------------------------------------------CSERDKLLYILTLLKLE---LVQK 284 (605)
Q Consensus 264 --------------------------------------------------------~~~~~k~~~l~~llk~~---~~~~ 284 (605)
.....|+..|..++... ....
T Consensus 553 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~ 632 (797)
T 4a2q_A 553 NDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQT 632 (797)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCC
Confidence 00133555555555532 3467
Q ss_pred eEEEEecchhHHHHHHHHHHHc------------CCcEEEEcCCCCHHHHHHHHHHHHc-CCCcEEEEcCCCCccccccc
Q 007402 285 KALIFTNTIDMAFRLKLFLEKF------------GIKSAILNAELPQNSRLHILEEFNA-GLFDYLIATDDTQTKEKDQS 351 (605)
Q Consensus 285 k~IIFv~s~~~~~~L~~~L~~~------------gi~~~~l~~~l~~~~R~~i~~~F~~-g~~~iLIaTd~~~~~~~~~~ 351 (605)
++||||++++.+..|..+|... |..+..+||+|++.+|..++++|++ |.++|||||++++
T Consensus 633 kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~------- 705 (797)
T 4a2q_A 633 RTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVAD------- 705 (797)
T ss_dssp CEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC---------
T ss_pred eEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchh-------
Confidence 9999999999999999999873 6677778999999999999999999 9999999999977
Q ss_pred CCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCccEEEEeCCchh
Q 007402 352 DEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM 425 (605)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~~v~~~e~ 425 (605)
+|||+|+|++||+||+|+|+..|+||+|| ||. +.|.+++|+++.+.
T Consensus 706 --------------------------~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ 751 (797)
T 4a2q_A 706 --------------------------EGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (797)
T ss_dssp -------------------------------CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHH
T ss_pred --------------------------cCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcH
Confidence 79999999999999999999999999999 999 89999999988654
No 31
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1.9e-44 Score=413.86 Aligned_cols=332 Identities=19% Similarity=0.254 Sum_probs=262.7
Q ss_pred cCcccCC--CCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEE
Q 007402 26 KSFEELG--LDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAAL 103 (605)
Q Consensus 26 ~~f~~~~--L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~L 103 (605)
++|++|+ |++.+.+.+.++||.+|+|+|.++++.+++|++++++||||||||++|.+|+++.+.. +.++|
T Consensus 1 m~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~--------~~~~l 72 (702)
T 2p6r_A 1 MKVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK--------GGKSL 72 (702)
T ss_dssp CCSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT--------TCCEE
T ss_pred CchhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh--------CCcEE
Confidence 3699999 9999999999999999999999999999999999999999999999999999988764 45799
Q ss_pred EEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCce
Q 007402 104 VLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLK 183 (605)
Q Consensus 104 ilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~ 183 (605)
|++|+++|+.|+++.++.+.. .++++..++|+...... ....++|+|+||+++..++.... ..+++++
T Consensus 73 ~i~P~r~La~q~~~~~~~~~~-----~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~----~~l~~~~ 140 (702)
T 2p6r_A 73 YVVPLRALAGEKYESFKKWEK-----IGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRA----SWIKAVS 140 (702)
T ss_dssp EEESSHHHHHHHHHHHTTTTT-----TTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTC----SGGGGCC
T ss_pred EEeCcHHHHHHHHHHHHHHHh-----cCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcCh----hHHhhcC
Confidence 999999999999999854321 16788888887543221 12478999999999999988753 4578899
Q ss_pred EEEEeCcchhccCCcHHHHHHHHhhC---CCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEE
Q 007402 184 ILVLDEADLLLSYGYEDDLKALSAVI---PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF 260 (605)
Q Consensus 184 ~lViDEad~i~~~g~~~~l~~i~~~l---p~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~ 260 (605)
+|||||||++.++++...+..++..+ .+..|+++||||+++ .+.+...+ ..+ .+.... .+..+...
T Consensus 141 ~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~~l-~~~-~~~~~~--------r~~~l~~~ 209 (702)
T 2p6r_A 141 CLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAEWL-DAD-YYVSDW--------RPVPLVEG 209 (702)
T ss_dssp EEEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHHHT-TCE-EEECCC--------CSSCEEEE
T ss_pred EEEEeeeeecCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHHHh-CCC-cccCCC--------CCccceEE
Confidence 99999999999988888887776655 568999999999986 45555543 322 222111 11112221
Q ss_pred EE------Eccc-------cchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHc---------------------
Q 007402 261 WI------SCSE-------RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKF--------------------- 306 (605)
Q Consensus 261 ~~------~~~~-------~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~--------------------- 306 (605)
+. ..+. ......+...+. ..+++||||+++..|+.++..|...
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~ 286 (702)
T 2p6r_A 210 VLCEGTLELFDGAFSTSRRVKFEELVEECVA---ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGE 286 (702)
T ss_dssp EECSSEEEEEETTEEEEEECCHHHHHHHHHH---TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSH
T ss_pred EeeCCeeeccCcchhhhhhhhHHHHHHHHHh---cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhcccc
Confidence 11 0111 114444444443 4689999999999999999988753
Q ss_pred ---------CCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccc
Q 007402 307 ---------GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVV 377 (605)
Q Consensus 307 ---------gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~ 377 (605)
+..+.++||+|+..+|..+++.|.+|..+|||||++++
T Consensus 287 ~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~--------------------------------- 333 (702)
T 2p6r_A 287 MSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLA--------------------------------- 333 (702)
T ss_dssp HHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTT---------------------------------
T ss_pred ccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHh---------------------------------
Confidence 23578899999999999999999999999999999987
Q ss_pred cccccCCccEEEE----eC---CCCCchhHHHhhcccccCC--CCccEEEEeCCch
Q 007402 378 RGIDFKNVHTVIN----FE---MPQNAAGYVHRIGRTGRAY--NTGASVSLVSPDE 424 (605)
Q Consensus 378 rGiD~~~v~~VI~----fd---~P~s~~~yiqRiGRtgR~g--~~G~ai~~v~~~e 424 (605)
+|||+|++.+||+ || .|.|..+|+||+||+||.| ..|.|+.++++.+
T Consensus 334 ~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 389 (702)
T 2p6r_A 334 AGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRD 389 (702)
T ss_dssp SSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGG
T ss_pred ccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCcc
Confidence 7999999999999 77 7899999999999999988 4899999998765
No 32
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=6.2e-43 Score=411.54 Aligned_cols=348 Identities=19% Similarity=0.192 Sum_probs=209.0
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHH
Q 007402 33 LDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELC 112 (605)
Q Consensus 33 L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa 112 (605)
+++.+.....-.|+..|+|+|.++|+.+++|+|+|+.+|||||||++|++|+++.+.... ...+.++|||+||++|+
T Consensus 233 ~~e~~~~~~~l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~---~~~~~~vLvl~Pt~~L~ 309 (936)
T 4a2w_A 233 AAEGIGKPPPVYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVY 309 (936)
T ss_dssp ---------------CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCC---SSCCCCEEEECSSHHHH
T ss_pred hhhhhcCcccccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhcc---ccCCCeEEEEeCCHHHH
Confidence 444444444445889999999999999999999999999999999999999998776532 12267899999999999
Q ss_pred HHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcch
Q 007402 113 QQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADL 192 (605)
Q Consensus 113 ~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~ 192 (605)
.|+++.+..++... ++++..++|+.+...+...+...++|+|+||++|.+++..+.+ ..+.++++|||||||+
T Consensus 310 ~Q~~~~~~~~~~~~----~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~---~~l~~~~liViDEaH~ 382 (936)
T 4a2w_A 310 EQQKNVFKHHFERQ----GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTL---TSLSIFTLMIFDECHN 382 (936)
T ss_dssp HHHHHHHHHHHHTT----TCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSC---CCGGGCSEEEEETGGG
T ss_pred HHHHHHHHHHhccc----CceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCcc---ccccCCCEEEEECccc
Confidence 99999999988754 6788899998866555455556789999999999999987641 2577899999999999
Q ss_pred hccCCc-HHHHHHHHhh----CCCCceEEEEeeecCh-----------hHHHHHHHh------------------cCCCe
Q 007402 193 LLSYGY-EDDLKALSAV----IPRGCQCLLMSATSSS-----------DVDKLKKLI------------------LHNPY 238 (605)
Q Consensus 193 i~~~g~-~~~l~~i~~~----lp~~~q~il~SATl~~-----------~v~~l~~~~------------------l~~p~ 238 (605)
+...+. ...+..+... ..+..|+++||||+.. .+..+...+ +..|.
T Consensus 383 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~ 462 (936)
T 4a2w_A 383 TTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPE 462 (936)
T ss_dssp CSTTCHHHHHHHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCC
T ss_pred cCCCccHHHHHHHHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCc
Confidence 987653 3333333332 1456899999999952 122222111 12222
Q ss_pred EEEcCCccCcccc--------------c-----cCCCcEEE-------------EEE-----------------------
Q 007402 239 ILTLPEVGDVKDE--------------V-----IPKNVQQF-------------WIS----------------------- 263 (605)
Q Consensus 239 ~i~l~~~~~~~~~--------------~-----~~~~l~q~-------------~~~----------------------- 263 (605)
............. . ....+.+. ...
T Consensus 463 ~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l 542 (936)
T 4a2w_A 463 IDVRLVKRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRAL 542 (936)
T ss_dssp EEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHH
T ss_pred ceEEecccccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHH
Confidence 1110000000000 0 00000000 000
Q ss_pred ------------------------------------------------------------------ccccchHHHHHHHH
Q 007402 264 ------------------------------------------------------------------CSERDKLLYILTLL 277 (605)
Q Consensus 264 ------------------------------------------------------------------~~~~~k~~~l~~ll 277 (605)
.....|...+..++
T Consensus 543 ~~~~~~l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL 622 (936)
T 4a2w_A 543 FICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCIL 622 (936)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHH
Confidence 00123444555555
Q ss_pred Hhh---cCCCeEEEEecchhHHHHHHHHHHHc------------CCcEEEEcCCCCHHHHHHHHHHHHc-CCCcEEEEcC
Q 007402 278 KLE---LVQKKALIFTNTIDMAFRLKLFLEKF------------GIKSAILNAELPQNSRLHILEEFNA-GLFDYLIATD 341 (605)
Q Consensus 278 k~~---~~~~k~IIFv~s~~~~~~L~~~L~~~------------gi~~~~l~~~l~~~~R~~i~~~F~~-g~~~iLIaTd 341 (605)
... ....++||||++++.+..|..+|... |..+..+||+|++.+|..++++|+. |.++|||||+
T Consensus 623 ~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~ 702 (936)
T 4a2w_A 623 DDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS 702 (936)
T ss_dssp HHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEEC
T ss_pred HHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeC
Confidence 542 23579999999999999999999986 5666677999999999999999999 9999999999
Q ss_pred CCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCccEEEEeC
Q 007402 342 DTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS 421 (605)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~~v~ 421 (605)
+++ +|||+|+|++||+||+|+|+.+|+||+|| ||. ..|.++.|++
T Consensus 703 ~~~---------------------------------eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~ 747 (936)
T 4a2w_A 703 VAD---------------------------------EGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTS 747 (936)
T ss_dssp C---------------------------------------CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEES
T ss_pred chh---------------------------------cCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEe
Confidence 977 79999999999999999999999999999 999 8899999998
Q ss_pred Cchh
Q 007402 422 PDEM 425 (605)
Q Consensus 422 ~~e~ 425 (605)
..+.
T Consensus 748 ~~t~ 751 (936)
T 4a2w_A 748 KTEV 751 (936)
T ss_dssp CHHH
T ss_pred CCCH
Confidence 8655
No 33
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.1e-42 Score=402.89 Aligned_cols=314 Identities=18% Similarity=0.245 Sum_probs=252.6
Q ss_pred HHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHH
Q 007402 41 LNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVM 120 (605)
Q Consensus 41 l~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~ 120 (605)
...++|. |+++|.+||+.+++|+++|++||||||||++|.+|+++.+.. +.++||++||++|+.|+++.+.
T Consensus 80 ~~~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~--------g~rvL~l~PtkaLa~Q~~~~l~ 150 (1010)
T 2xgj_A 80 ARTYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN--------KQRVIYTSPIKALSNQKYRELL 150 (1010)
T ss_dssp SCCCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT--------TCEEEEEESSHHHHHHHHHHHH
T ss_pred HHhCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc--------CCeEEEECChHHHHHHHHHHHH
Confidence 4456885 999999999999999999999999999999999999987643 5789999999999999999998
Q ss_pred HHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCcHH
Q 007402 121 ALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYED 200 (605)
Q Consensus 121 ~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~~ 200 (605)
.++. .+..++|+.+. ...++|+|+||++|.+++..+. ..+.++++|||||||.+.++++..
T Consensus 151 ~~~~--------~vglltGd~~~-------~~~~~IvV~Tpe~L~~~L~~~~----~~l~~l~lVViDEaH~l~d~~rg~ 211 (1010)
T 2xgj_A 151 AEFG--------DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGS----EVMREVAWVIFDEVHYMRDKERGV 211 (1010)
T ss_dssp HHHS--------CEEEECSSCEE-------CTTCSEEEEEHHHHHHHHHHTC----TTGGGEEEEEEETGGGGGCTTTHH
T ss_pred HHhC--------CEEEEeCCCcc-------CCCCCEEEEcHHHHHHHHHcCc----chhhcCCEEEEechhhhcccchhH
Confidence 8752 45667787643 2468999999999999988764 667899999999999999999999
Q ss_pred HHHHHHhhCCCCceEEEEeeecChhHH--HHHHHhcCCCeEEEcCCccCccccccCCCcEEEEEEcc---------c---
Q 007402 201 DLKALSAVIPRGCQCLLMSATSSSDVD--KLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS---------E--- 266 (605)
Q Consensus 201 ~l~~i~~~lp~~~q~il~SATl~~~v~--~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~~---------~--- 266 (605)
.+..++..+|...|+++||||+++..+ .........|..+.... ..+..+.++++... .
T Consensus 212 ~~e~il~~l~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~-------~rp~pl~~~~~~~~~~~~~~~~~~~~~ 284 (1010)
T 2xgj_A 212 VWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTN-------FRPTPLQHYLFPAHGDGIYLVVDEKST 284 (1010)
T ss_dssp HHHHHHHHSCTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEEC-------CCSSCEEEEEEETTSSCCEEEECTTCC
T ss_pred HHHHHHHhcCCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecC-------CCcccceEEEEecCCcceeeeeccccc
Confidence 999999999999999999999987543 22222334555443322 11223444443311 0
Q ss_pred -------------------------------------------cchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHH
Q 007402 267 -------------------------------------------RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFL 303 (605)
Q Consensus 267 -------------------------------------------~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L 303 (605)
...+..+...+.. ...+++||||+++..|+.++..|
T Consensus 285 ~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~-~~~~~~IVF~~sr~~~e~la~~L 363 (1010)
T 2xgj_A 285 FREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWK-KKYNPVIVFSFSKRDCEELALKM 363 (1010)
T ss_dssp BCHHHHHHHHHTCC------------------------------CHHHHHHHHHHH-HTCCSEEEEESSHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHh-cCCCCEEEEECCHHHHHHHHHHH
Confidence 1111222222222 22458999999999999999988
Q ss_pred HHcCCc---------------------------------------EEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCC
Q 007402 304 EKFGIK---------------------------------------SAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ 344 (605)
Q Consensus 304 ~~~gi~---------------------------------------~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~ 344 (605)
...++. +.++||+|+...|..+++.|++|.++|||||++++
T Consensus 364 ~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la 443 (1010)
T 2xgj_A 364 SKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFS 443 (1010)
T ss_dssp TTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGG
T ss_pred HhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhh
Confidence 765442 78899999999999999999999999999999976
Q ss_pred cccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEE----eCC----CCCchhHHHhhcccccCCC--Cc
Q 007402 345 TKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN----FEM----PQNAAGYVHRIGRTGRAYN--TG 414 (605)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~----fd~----P~s~~~yiqRiGRtgR~g~--~G 414 (605)
+|||+|++++||+ ||. |.|+.+|+||+||+||.|. .|
T Consensus 444 ---------------------------------~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G 490 (1010)
T 2xgj_A 444 ---------------------------------IGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRG 490 (1010)
T ss_dssp ---------------------------------GSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSE
T ss_pred ---------------------------------ccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCce
Confidence 7999999999999 999 8999999999999999997 59
Q ss_pred cEEEEeCCc
Q 007402 415 ASVSLVSPD 423 (605)
Q Consensus 415 ~ai~~v~~~ 423 (605)
.|++|+.+.
T Consensus 491 ~vi~l~~~~ 499 (1010)
T 2xgj_A 491 IVIMMIDEK 499 (1010)
T ss_dssp EEEEEECSC
T ss_pred EEEEEECCC
Confidence 999999865
No 34
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.2e-41 Score=368.47 Aligned_cols=327 Identities=22% Similarity=0.247 Sum_probs=248.2
Q ss_pred CChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHHhc
Q 007402 48 KPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCK 127 (605)
Q Consensus 48 ~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~ 127 (605)
.|+|+|.++++.++++ ++++.+|||+|||+++++++++.+.. .+.++||+|||++|+.|+++.+.+++..
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~-------~~~~~liv~P~~~L~~q~~~~~~~~~~~-- 78 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK-------YGGKVLMLAPTKPLVLQHAESFRRLFNL-- 78 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH-------SCSCEEEECSSHHHHHHHHHHHHHHBCS--
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc-------CCCeEEEEECCHHHHHHHHHHHHHHhCc--
Confidence 6899999999999999 99999999999999999999987752 2567999999999999999999887521
Q ss_pred CCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCcHHHHHHHHh
Q 007402 128 GQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207 (605)
Q Consensus 128 ~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~~~l~~i~~ 207 (605)
. ..++..++|+........ +...++|+|+||+.+...+..+. ..+.++++|||||||++.+......+...+.
T Consensus 79 ~--~~~v~~~~g~~~~~~~~~-~~~~~~ivv~T~~~l~~~~~~~~----~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~ 151 (494)
T 1wp9_A 79 P--PEKIVALTGEKSPEERSK-AWARAKVIVATPQTIENDLLAGR----ISLEDVSLIVFDEAHRAVGNYAYVFIAREYK 151 (494)
T ss_dssp C--GGGEEEECSCSCHHHHHH-HHHHCSEEEECHHHHHHHHHTTS----CCTTSCSEEEEETGGGCSTTCHHHHHHHHHH
T ss_pred c--hhheEEeeCCcchhhhhh-hccCCCEEEecHHHHHHHHhcCC----cchhhceEEEEECCcccCCCCcHHHHHHHHH
Confidence 1 347888888887665443 33468999999999999888764 5678899999999999986654455555555
Q ss_pred hCCCCceEEEEeeecChhHHHHH---HHhcCCCeEEEcCCccCccccccCCCcEEEEEEc--------------------
Q 007402 208 VIPRGCQCLLMSATSSSDVDKLK---KLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC-------------------- 264 (605)
Q Consensus 208 ~lp~~~q~il~SATl~~~v~~l~---~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~-------------------- 264 (605)
...+..++++||||+......+. ..+...+..+........................
T Consensus 152 ~~~~~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (494)
T 1wp9_A 152 RQAKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALK 231 (494)
T ss_dssp HHCSSCCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHH
Confidence 55678899999999985544433 3222221111111100000000000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 007402 265 -------------------------------------------------------------------------------- 264 (605)
Q Consensus 265 -------------------------------------------------------------------------------- 264 (605)
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 311 (494)
T 1wp9_A 232 PLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAG 311 (494)
T ss_dssp HHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccc
Confidence
Q ss_pred ----------------------------cccchHHHHHHHHHhh---cCCCeEEEEecchhHHHHHHHHHHHcCCcEEEE
Q 007402 265 ----------------------------SERDKLLYILTLLKLE---LVQKKALIFTNTIDMAFRLKLFLEKFGIKSAIL 313 (605)
Q Consensus 265 ----------------------------~~~~k~~~l~~llk~~---~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l 313 (605)
....|...+..++... ...+++||||++++.+..+...|...|+.+..+
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~ 391 (494)
T 1wp9_A 312 STKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRF 391 (494)
T ss_dssp CCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEE
T ss_pred cchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEE
Confidence 2233555566666543 357899999999999999999999999999999
Q ss_pred cC--------CCCHHHHHHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCc
Q 007402 314 NA--------ELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385 (605)
Q Consensus 314 ~~--------~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v 385 (605)
|| +|+..+|..+++.|++|.++|||||+.++ +|||++++
T Consensus 392 ~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~---------------------------------~Gldl~~~ 438 (494)
T 1wp9_A 392 VGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGE---------------------------------EGLDVPEV 438 (494)
T ss_dssp CCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGG---------------------------------GGGGSTTC
T ss_pred eccccccccccCCHHHHHHHHHHHhcCCceEEEECCccc---------------------------------cCCCchhC
Confidence 99 99999999999999999999999999866 79999999
Q ss_pred cEEEEeCCCCCchhHHHhhcccccCCCCccEEEEeCCchh
Q 007402 386 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM 425 (605)
Q Consensus 386 ~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~~v~~~e~ 425 (605)
++||+||+|+|+..|+||+||+||.|+ |.++.|+++.+.
T Consensus 439 ~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~ 477 (494)
T 1wp9_A 439 DLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTR 477 (494)
T ss_dssp CEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSH
T ss_pred CEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCH
Confidence 999999999999999999999999998 999999998643
No 35
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=2.1e-42 Score=396.89 Aligned_cols=333 Identities=21% Similarity=0.249 Sum_probs=224.8
Q ss_pred CCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHH-HHHHHHHHHH
Q 007402 47 QKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQV-YSEVMALIEL 125 (605)
Q Consensus 47 ~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv-~~~~~~l~~~ 125 (605)
-.|+|+|.++|+.+++|+|+|+.+|||+|||++|++|+++.+..... ...+.++|||+||++|+.|+ ++.+..++..
T Consensus 6 ~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~--~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~ 83 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK--ASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 83 (699)
T ss_dssp -CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH--HTCCCCBCCEESCSHHHHHHHHHTHHHHHTT
T ss_pred CCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc--cCCCCeEEEEECCHHHHHHHHHHHHHHHcCc
Confidence 37999999999999999999999999999999999999998776321 11236799999999999999 9999987642
Q ss_pred hcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCC--CCCcccCCCceEEEEeCcchhccCC-cHHHH
Q 007402 126 CKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGV--LQSKSFSDSLKILVLDEADLLLSYG-YEDDL 202 (605)
Q Consensus 126 ~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~--~~~~~~l~~l~~lViDEad~i~~~g-~~~~l 202 (605)
.+++..++|+.....+...+...++|+|+||++|.+++.... ......+.++++|||||||++...+ |...+
T Consensus 84 -----~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~ 158 (699)
T 4gl2_A 84 -----WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIM 158 (699)
T ss_dssp -----TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHH
T ss_pred -----CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHH
Confidence 378888888865544444455689999999999999884321 1123567889999999999986543 33333
Q ss_pred HHHHhhC-------------CCCceEEEEeeecChh-----------HHHHHHHhcCCCeEEEcCCc-cCccccccCCCc
Q 007402 203 KALSAVI-------------PRGCQCLLMSATSSSD-----------VDKLKKLILHNPYILTLPEV-GDVKDEVIPKNV 257 (605)
Q Consensus 203 ~~i~~~l-------------p~~~q~il~SATl~~~-----------v~~l~~~~l~~p~~i~l~~~-~~~~~~~~~~~l 257 (605)
..++... ++..|+++||||++.. +..+...+-. ..+...... .... .......
T Consensus 159 ~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~-~~i~~~~~~~~~l~-~~~~~p~ 236 (699)
T 4gl2_A 159 RHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDA-FTIKTVKENLDQLK-NQIQEPC 236 (699)
T ss_dssp HHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTC-SCCCCCCTTHHHHH-HHSCCCE
T ss_pred HHHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCC-CEEEeecCchHHHh-hhcCCCc
Confidence 3332221 1567999999999862 2222222111 010000000 0000 0000000
Q ss_pred EEEEEEc-------------------------------------------------------------------------
Q 007402 258 QQFWISC------------------------------------------------------------------------- 264 (605)
Q Consensus 258 ~q~~~~~------------------------------------------------------------------------- 264 (605)
..+....
T Consensus 237 ~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 316 (699)
T 4gl2_A 237 KKFAIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDT 316 (699)
T ss_dssp EEEEEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 0000000
Q ss_pred -----------------------------------c--------------------------ccchHHHHHHHHHhhc--
Q 007402 265 -----------------------------------S--------------------------ERDKLLYILTLLKLEL-- 281 (605)
Q Consensus 265 -----------------------------------~--------------------------~~~k~~~l~~llk~~~-- 281 (605)
. ...|...+..++....
T Consensus 317 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~ 396 (699)
T 4gl2_A 317 IRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTR 396 (699)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhc
Confidence 0 0111112222232211
Q ss_pred -C-CCeEEEEecchhHHHHHHHHHHHc------CCcEEEEcCC--------CCHHHHHHHHHHHHcCCCcEEEEcCCCCc
Q 007402 282 -V-QKKALIFTNTIDMAFRLKLFLEKF------GIKSAILNAE--------LPQNSRLHILEEFNAGLFDYLIATDDTQT 345 (605)
Q Consensus 282 -~-~~k~IIFv~s~~~~~~L~~~L~~~------gi~~~~l~~~--------l~~~~R~~i~~~F~~g~~~iLIaTd~~~~ 345 (605)
. .+++||||++++.++.|+.+|... |+.+..+||+ |+..+|..+++.|++|.++|||||++++
T Consensus 397 ~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~- 475 (699)
T 4gl2_A 397 TEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAE- 475 (699)
T ss_dssp SSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCC-
T ss_pred CCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccc-
Confidence 2 689999999999999999999987 8999999999 9999999999999999999999999987
Q ss_pred ccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCccEEEEeCCch
Q 007402 346 KEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE 424 (605)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~~v~~~e 424 (605)
+|||+|+|++||+||+|+|+.+|+||+||+||. |.+++|+.+.+
T Consensus 476 --------------------------------~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~---g~~~~l~~~~~ 519 (699)
T 4gl2_A 476 --------------------------------EGLDIKECNIVIRYGLVTNEIAMVQARGRARAD---ESTYVLVAHSG 519 (699)
T ss_dssp --------------------------------TTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSS---SCEEEEEEESS
T ss_pred --------------------------------cCCccccCCEEEEeCCCCCHHHHHHHcCCCCCC---CceEEEEEeCC
Confidence 799999999999999999999999999996554 46666665543
No 36
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=1.8e-40 Score=390.94 Aligned_cols=309 Identities=16% Similarity=0.213 Sum_probs=241.3
Q ss_pred HCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHH
Q 007402 43 KKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMAL 122 (605)
Q Consensus 43 ~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l 122 (605)
.++|. |+++|.++|+.+++|+|+++.||||||||++|++|+...+.. +.++||++||++|+.|+++.+..+
T Consensus 35 ~~~f~-l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~--------g~~vlvl~PtraLa~Q~~~~l~~~ 105 (997)
T 4a4z_A 35 SWPFE-LDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN--------MTKTIYTSPIKALSNQKFRDFKET 105 (997)
T ss_dssp CCSSC-CCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHT--------TCEEEEEESCGGGHHHHHHHHHTT
T ss_pred hCCCC-CCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhc--------CCeEEEEeCCHHHHHHHHHHHHHH
Confidence 45774 899999999999999999999999999999999998876533 678999999999999999998875
Q ss_pred HHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCcHHHH
Q 007402 123 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 202 (605)
Q Consensus 123 ~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~~~l 202 (605)
+. ++.+..++|+.+ ....++|+|+||++|.+++..+. ..+.++++|||||||++.++++...+
T Consensus 106 ~~------~~~v~~l~G~~~-------~~~~~~IlV~Tpe~L~~~l~~~~----~~l~~l~lvViDEaH~l~d~~~g~~~ 168 (997)
T 4a4z_A 106 FD------DVNIGLITGDVQ-------INPDANCLIMTTEILRSMLYRGA----DLIRDVEFVIFDEVHYVNDQDRGVVW 168 (997)
T ss_dssp C--------CCEEEECSSCE-------ECTTSSEEEEEHHHHHHHHHHTC----SGGGGEEEEEECCTTCCCTTCTTCCH
T ss_pred cC------CCeEEEEeCCCc-------cCCCCCEEEECHHHHHHHHHhCc----hhhcCCCEEEEECcccccccchHHHH
Confidence 42 467788888764 23468999999999999998764 56788999999999999999999999
Q ss_pred HHHHhhCCCCceEEEEeeecChhHHHHHHHhc---CCCeEEEcCCccCccccccCCCcE---------------------
Q 007402 203 KALSAVIPRGCQCLLMSATSSSDVDKLKKLIL---HNPYILTLPEVGDVKDEVIPKNVQ--------------------- 258 (605)
Q Consensus 203 ~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l---~~p~~i~l~~~~~~~~~~~~~~l~--------------------- 258 (605)
..++..+|+..|++++|||+++..+ +...+. ..+..+.... ..+..+.
T Consensus 169 e~ii~~l~~~v~iIlLSAT~~n~~e-f~~~l~~~~~~~~~vi~~~-------~r~~pl~~~v~~~~~~~~~~~~~~~~~~ 240 (997)
T 4a4z_A 169 EEVIIMLPQHVKFILLSATVPNTYE-FANWIGRTKQKNIYVISTP-------KRPVPLEINIWAKKELIPVINQNSEFLE 240 (997)
T ss_dssp HHHHHHSCTTCEEEEEECCCTTHHH-HHHHHHHHHTCCEEEEECS-------SCSSCEEEEEEETTEEEEEECTTCCBCH
T ss_pred HHHHHhcccCCCEEEEcCCCCChHH-HHHHHhcccCCceEEEecC-------CCCccceEEEecCCcchhcccchhhhhH
Confidence 9999999999999999999987653 332221 1222111100 0000111
Q ss_pred ------------------------------------------------------------------------EEEEEccc
Q 007402 259 ------------------------------------------------------------------------QFWISCSE 266 (605)
Q Consensus 259 ------------------------------------------------------------------------q~~~~~~~ 266 (605)
.++..+..
T Consensus 241 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (997)
T 4a4z_A 241 ANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPS 320 (997)
T ss_dssp HHHHHHHHHHC-----------------------------------------------------------------CCCC
T ss_pred HHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 12222233
Q ss_pred cchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCC--------------------------------------
Q 007402 267 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGI-------------------------------------- 308 (605)
Q Consensus 267 ~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi-------------------------------------- 308 (605)
..++..+...+... ..+++||||+++..|+.++..|...++
T Consensus 321 ~~~~~~li~~l~~~-~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~ 399 (997)
T 4a4z_A 321 KKTWPEIVNYLRKR-ELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLE 399 (997)
T ss_dssp TTHHHHHHHHHHHT-TCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhh
Confidence 44555566666543 357999999999999999999977665
Q ss_pred -cEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccE
Q 007402 309 -KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 387 (605)
Q Consensus 309 -~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~ 387 (605)
.+.++||+|++..|..+++.|.+|.++|||||++++ +|||+|++.
T Consensus 400 ~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a---------------------------------~GIDiP~~~- 445 (997)
T 4a4z_A 400 RGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFA---------------------------------MGLNLPTRT- 445 (997)
T ss_dssp TTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHH---------------------------------HSCCCCCSE-
T ss_pred cCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhh---------------------------------CCCCCCCce-
Confidence 578999999999999999999999999999999965 799999954
Q ss_pred EEEeCCC---------CCchhHHHhhcccccCCC--CccEEEEe
Q 007402 388 VINFEMP---------QNAAGYVHRIGRTGRAYN--TGASVSLV 420 (605)
Q Consensus 388 VI~fd~P---------~s~~~yiqRiGRtgR~g~--~G~ai~~v 420 (605)
||++++| .|+.+|+||+|||||.|. .|.++.++
T Consensus 446 VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~ 489 (997)
T 4a4z_A 446 VIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMA 489 (997)
T ss_dssp EEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEEC
T ss_pred EEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEec
Confidence 5544444 499999999999999984 56666666
No 37
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=5.4e-41 Score=384.26 Aligned_cols=321 Identities=20% Similarity=0.233 Sum_probs=239.8
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHhCC------CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCc
Q 007402 35 LRLVHALNKKGIQKPTLIQQASIPLILEG------KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPT 108 (605)
Q Consensus 35 ~~l~~al~~~g~~~pt~iQ~~aIp~~l~g------kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPt 108 (605)
+.+.+.+..+|| .||++|.++|+.++++ .++|++|+||||||++|++|+++.+.. +.+++|++||
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~--------g~qvlvlaPt 426 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA--------GFQTAFMVPT 426 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH--------TSCEEEECSC
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc--------CCeEEEEeCc
Confidence 444455678999 8999999999999876 599999999999999999999998765 5679999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHH----HcCCCcEEEECCchHHHHHhcCCCCCcccCCCceE
Q 007402 109 RELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAA----LAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKI 184 (605)
Q Consensus 109 reLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~----l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~ 184 (605)
++|+.|+++.+..++..+ ++++..++|+.+....... ..+.++|+|+||+.+.+ . ..+.++++
T Consensus 427 r~La~Q~~~~l~~~~~~~----gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~----~-----~~~~~l~l 493 (780)
T 1gm5_A 427 SILAIQHYRRTVESFSKF----NIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE----D-----VHFKNLGL 493 (780)
T ss_dssp HHHHHHHHHHHHHHHTCS----SCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH----C-----CCCSCCCE
T ss_pred HHHHHHHHHHHHHHhhhc----CceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh----h-----hhccCCce
Confidence 999999999999887533 6889999999887654332 23569999999987743 1 55778999
Q ss_pred EEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEEEEEc
Q 007402 185 LVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 264 (605)
Q Consensus 185 lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~ 264 (605)
|||||||++ |+.. ...+.......|+++||||+.+....+. ...+..+..+.. .......+..+++.
T Consensus 494 VVIDEaHr~---g~~q--r~~l~~~~~~~~vL~mSATp~p~tl~~~--~~g~~~~s~i~~-----~p~~r~~i~~~~~~- 560 (780)
T 1gm5_A 494 VIIDEQHRF---GVKQ--REALMNKGKMVDTLVMSATPIPRSMALA--FYGDLDVTVIDE-----MPPGRKEVQTMLVP- 560 (780)
T ss_dssp EEEESCCCC----------CCCCSSSSCCCEEEEESSCCCHHHHHH--HTCCSSCEEECC-----CCSSCCCCEECCCC-
T ss_pred EEecccchh---hHHH--HHHHHHhCCCCCEEEEeCCCCHHHHHHH--HhCCcceeeeec-----cCCCCcceEEEEec-
Confidence 999999995 2221 1122223346899999999877654332 233222212211 01111233333332
Q ss_pred cccchHHHHHHHHHhh-cCCCeEEEEecchh--------HHHHHHHHHHH---cCCcEEEEcCCCCHHHHHHHHHHHHcC
Q 007402 265 SERDKLLYILTLLKLE-LVQKKALIFTNTID--------MAFRLKLFLEK---FGIKSAILNAELPQNSRLHILEEFNAG 332 (605)
Q Consensus 265 ~~~~k~~~l~~llk~~-~~~~k~IIFv~s~~--------~~~~L~~~L~~---~gi~~~~l~~~l~~~~R~~i~~~F~~g 332 (605)
..+...++..+... ...++++|||++++ .+..++..|.. .++.+..+||+|++.+|..+++.|++|
T Consensus 561 --~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G 638 (780)
T 1gm5_A 561 --MDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEG 638 (780)
T ss_dssp --SSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTT
T ss_pred --cchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCC
Confidence 22333344444433 34678999999764 46778888877 378999999999999999999999999
Q ss_pred CCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCC-CchhHHHhhcccccCC
Q 007402 333 LFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQ-NAAGYVHRIGRTGRAY 411 (605)
Q Consensus 333 ~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~-s~~~yiqRiGRtgR~g 411 (605)
+++|||||++++ +|||+|++++||++|.|. +...|.||+||+||+|
T Consensus 639 ~~~ILVaT~vie---------------------------------~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g 685 (780)
T 1gm5_A 639 RYDILVSTTVIE---------------------------------VGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGG 685 (780)
T ss_dssp SSSBCCCSSCCC---------------------------------SCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSS
T ss_pred CCeEEEECCCCC---------------------------------ccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCC
Confidence 999999999977 799999999999999996 6888899999999999
Q ss_pred CCccEEEEeCCchh
Q 007402 412 NTGASVSLVSPDEM 425 (605)
Q Consensus 412 ~~G~ai~~v~~~e~ 425 (605)
+.|.|++++.+.+.
T Consensus 686 ~~g~~ill~~~~~~ 699 (780)
T 1gm5_A 686 QEAYCFLVVGDVGE 699 (780)
T ss_dssp TTCEEECCCCSCCH
T ss_pred CCCEEEEEECCCCh
Confidence 99999999985433
No 38
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=5.8e-43 Score=393.27 Aligned_cols=319 Identities=15% Similarity=0.161 Sum_probs=238.8
Q ss_pred cCccc-CCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEE
Q 007402 26 KSFEE-LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALV 104 (605)
Q Consensus 26 ~~f~~-~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~Li 104 (605)
..|.. ++++++++++|... ...|+|+|+.+||.+++|+|+|+.||||||||++|++|+++.++.. +.++||
T Consensus 149 ~~~~~~l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~-------~~~vLv 220 (618)
T 2whx_A 149 LYGNGVVTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKR-------RLRTLI 220 (618)
T ss_dssp ECCC---------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT-------TCCEEE
T ss_pred ccccccccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC-------CCeEEE
Confidence 34555 77888888888764 5899999999999999999999999999999999999999998762 578999
Q ss_pred EcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceE
Q 007402 105 LVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKI 184 (605)
Q Consensus 105 lvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~ 184 (605)
|+||+|||.|+++.+..+ .+. +.+.... ..-..+..+.+.|.+.+...+... ..+.++++
T Consensus 221 l~PtreLa~Qi~~~l~~~--------~v~---~~~~~l~----~~~tp~~~i~~~t~~~l~~~l~~~-----~~l~~~~~ 280 (618)
T 2whx_A 221 LAPTRVVAAEMEEALRGL--------PIR---YQTPAVK----SDHTGREIVDLMCHATFTTRLLSS-----TRVPNYNL 280 (618)
T ss_dssp EESSHHHHHHHHHHTTTS--------CEE---ECCTTSS----CCCCSSSCEEEEEHHHHHHHHHHC-----SSCCCCSE
T ss_pred EcChHHHHHHHHHHhcCC--------cee---Eecccce----eccCCCceEEEEChHHHHHHHhcc-----ccccCCeE
Confidence 999999999999887621 232 2222100 000112345556666666555543 45788999
Q ss_pred EEEeCcchhccCCcHHHHHHHHhhCC-CCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEEEEE
Q 007402 185 LVLDEADLLLSYGYEDDLKALSAVIP-RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWIS 263 (605)
Q Consensus 185 lViDEad~i~~~g~~~~l~~i~~~lp-~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~ 263 (605)
|||||||++ +.++...+..+...++ ..+|+++||||++..+..+.. .++..+.+... .
T Consensus 281 iViDEah~~-~~~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~-----~------------ 339 (618)
T 2whx_A 281 IVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIERE-----I------------ 339 (618)
T ss_dssp EEEESTTCC-SHHHHHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECC-----C------------
T ss_pred EEEECCCCC-CccHHHHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeeccc-----C------------
Confidence 999999998 6678888888888776 689999999999877543221 34555544321 0
Q ss_pred ccccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 007402 264 CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDT 343 (605)
Q Consensus 264 ~~~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~ 343 (605)
+. .++..++..+.. ..+++||||++++.|+.++..|...|+.+..+||+ +|..+++.|++|.++||||||++
T Consensus 340 -~~-~~~~~ll~~l~~--~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~ 411 (618)
T 2whx_A 340 -PE-RSWNTGFDWITD--YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDIS 411 (618)
T ss_dssp -CS-SCCSSSCHHHHH--CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGG
T ss_pred -CH-HHHHHHHHHHHh--CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHH
Confidence 00 000111122222 26799999999999999999999999999999985 68889999999999999999997
Q ss_pred CcccccccCCCCCcccccccCCCCCccccccccccccccCCccEE--------------------EEeCCCCCchhHHHh
Q 007402 344 QTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTV--------------------INFEMPQNAAGYVHR 403 (605)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~V--------------------I~fd~P~s~~~yiqR 403 (605)
+ ||||++ |++| ||||+|.|..+|+||
T Consensus 412 ~---------------------------------rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR 457 (618)
T 2whx_A 412 E---------------------------------MGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQR 457 (618)
T ss_dssp G---------------------------------TTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHH
T ss_pred H---------------------------------cCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHh
Confidence 6 899997 8888 888899999999999
Q ss_pred hcccccCCC-CccEEEEeC---CchhhHHHHHHHHH
Q 007402 404 IGRTGRAYN-TGASVSLVS---PDEMKIFEEIKSFV 435 (605)
Q Consensus 404 iGRtgR~g~-~G~ai~~v~---~~e~~~~~~~~~~l 435 (605)
+|||||+|. .|.|++|++ +.+...+..++..+
T Consensus 458 ~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i 493 (618)
T 2whx_A 458 RGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKM 493 (618)
T ss_dssp HTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHH
T ss_pred ccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHh
Confidence 999999965 999999998 77777777777665
No 39
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=3.2e-39 Score=385.49 Aligned_cols=326 Identities=18% Similarity=0.180 Sum_probs=259.6
Q ss_pred ccCCCCHHHHHHHH-HCCCCCChHHHHHHHHHHhC----CC--cEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCe
Q 007402 29 EELGLDLRLVHALN-KKGIQKPTLIQQASIPLILE----GK--DVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPA 101 (605)
Q Consensus 29 ~~~~L~~~l~~al~-~~g~~~pt~iQ~~aIp~~l~----gk--dvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~ 101 (605)
..++++..+.+.+. .+||. |||+|.+||+.+++ |+ |+|++|+||+|||.+|+++++..+.. +.+
T Consensus 584 ~~~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~--------g~~ 654 (1151)
T 2eyq_A 584 FAFKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN--------HKQ 654 (1151)
T ss_dssp CCCCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT--------TCE
T ss_pred CCCCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh--------CCe
Confidence 45678888888875 47885 79999999999987 66 99999999999999999998876543 568
Q ss_pred EEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHH---H-cCCCcEEEECCchHHHHHhcCCCCCcc
Q 007402 102 ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAA---L-AGPPDIVIATPGCMPKCLSTGVLQSKS 177 (605)
Q Consensus 102 ~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~---l-~~~~dIvV~TP~~l~~~l~~~~~~~~~ 177 (605)
++|+|||++|+.|+++.+...+... .+++..+++..+...+... + .+.++|+|+||+.+ ... .
T Consensus 655 vlvlvPt~~La~Q~~~~~~~~~~~~----~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll----~~~-----~ 721 (1151)
T 2eyq_A 655 VAVLVPTTLLAQQHYDNFRDRFANW----PVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL----QSD-----V 721 (1151)
T ss_dssp EEEECSSHHHHHHHHHHHHHHSTTT----TCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHH----HSC-----C
T ss_pred EEEEechHHHHHHHHHHHHHHhhcC----CCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHH----hCC-----c
Confidence 9999999999999999998765433 5778888887766544332 2 34699999999755 222 5
Q ss_pred cCCCceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCc
Q 007402 178 FSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNV 257 (605)
Q Consensus 178 ~l~~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l 257 (605)
.+.++++|||||||++ ......++..++...++++||||+.+....+....+.++.++.... .....+
T Consensus 722 ~~~~l~lvIiDEaH~~-----g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~-------~~r~~i 789 (1151)
T 2eyq_A 722 KFKDLGLLIVDEEHRF-----GVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPP-------ARRLAV 789 (1151)
T ss_dssp CCSSEEEEEEESGGGS-----CHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCC-------CBCBCE
T ss_pred cccccceEEEechHhc-----ChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCC-------CCcccc
Confidence 6788999999999994 2344556666677899999999998777666655555554443221 112245
Q ss_pred EEEEEEccccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHc--CCcEEEEcCCCCHHHHHHHHHHHHcCCCc
Q 007402 258 QQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKF--GIKSAILNAELPQNSRLHILEEFNAGLFD 335 (605)
Q Consensus 258 ~q~~~~~~~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~--gi~~~~l~~~l~~~~R~~i~~~F~~g~~~ 335 (605)
..++..... ..+...+++....+++++||||+++.++.++..|.+. ++++.++||+|+..+|..+++.|++|.++
T Consensus 790 ~~~~~~~~~---~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~ 866 (1151)
T 2eyq_A 790 KTFVREYDS---MVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFN 866 (1151)
T ss_dssp EEEEEECCH---HHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCC
T ss_pred EEEEecCCH---HHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCc
Confidence 555554433 3333444444445789999999999999999999987 88999999999999999999999999999
Q ss_pred EEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCC-CCCchhHHHhhcccccCCCCc
Q 007402 336 YLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEM-PQNAAGYVHRIGRTGRAYNTG 414 (605)
Q Consensus 336 iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~-P~s~~~yiqRiGRtgR~g~~G 414 (605)
|||||++++ +|||+|++++||+++. +.+..+|+||+||+||.|+.|
T Consensus 867 VLVaT~v~e---------------------------------~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g 913 (1151)
T 2eyq_A 867 VLVCTTIIE---------------------------------TGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQA 913 (1151)
T ss_dssp EEEESSTTG---------------------------------GGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCE
T ss_pred EEEECCcce---------------------------------eeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCce
Confidence 999999976 7999999999999998 568999999999999999999
Q ss_pred cEEEEeCCch
Q 007402 415 ASVSLVSPDE 424 (605)
Q Consensus 415 ~ai~~v~~~e 424 (605)
.|++++.+.+
T Consensus 914 ~~~ll~~~~~ 923 (1151)
T 2eyq_A 914 YAWLLTPHPK 923 (1151)
T ss_dssp EEEEEECCGG
T ss_pred EEEEEECCcc
Confidence 9999987654
No 40
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=2.5e-41 Score=368.23 Aligned_cols=287 Identities=18% Similarity=0.194 Sum_probs=218.4
Q ss_pred CCCCChHHHHHHHHHHhCCCcE-EEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHH
Q 007402 45 GIQKPTLIQQASIPLILEGKDV-VARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALI 123 (605)
Q Consensus 45 g~~~pt~iQ~~aIp~~l~gkdv-lv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~ 123 (605)
||.+|+|+|+ +||.+++|+|+ ++.||||||||++|++|+++.++.. +.++||++||++|+.|+++.+..
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~-------~~~~lvl~Ptr~La~Q~~~~l~g-- 70 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLR-------RLRTLILAPTRVVAAEMEEALRG-- 70 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHTTT--
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhc-------CCcEEEECCCHHHHHHHHHHhcC--
Confidence 7899999986 79999999987 9999999999999999999887652 57899999999999999998742
Q ss_pred HHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCcHHHHH
Q 007402 124 ELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLK 203 (605)
Q Consensus 124 ~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~~~l~ 203 (605)
+.+......... .......|.++|++.+..++... ..+.++++|||||||++ +.++...+.
T Consensus 71 --------~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-----~~l~~~~~iViDEah~~-~~~~~~~~~ 131 (451)
T 2jlq_A 71 --------LPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-----TRVPNYNLIVMDEAHFT-DPCSVAARG 131 (451)
T ss_dssp --------SCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-----SCCCCCSEEEEETTTCC-SHHHHHHHH
T ss_pred --------ceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-----ccccCCCEEEEeCCccC-CcchHHHHH
Confidence 222211111100 11234578999999998888754 55788999999999987 333333333
Q ss_pred HHHh-hCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEEEEEccccchHHHHHHHHHhhcC
Q 007402 204 ALSA-VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELV 282 (605)
Q Consensus 204 ~i~~-~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~~~~~k~~~l~~llk~~~~ 282 (605)
.+.. ..++..|+++||||++..+.. .+..++.++.... ... .. .+ ..++..+.. .
T Consensus 132 ~~~~~~~~~~~~~i~~SAT~~~~~~~---~~~~~~~~~~~~~-----~~p--~~--~~----------~~~~~~l~~--~ 187 (451)
T 2jlq_A 132 YISTRVEMGEAAAIFMTATPPGSTDP---FPQSNSPIEDIER-----EIP--ER--SW----------NTGFDWITD--Y 187 (451)
T ss_dssp HHHHHHHTTSCEEEEECSSCTTCCCS---SCCCSSCEEEEEC-----CCC--SS--CC----------SSSCHHHHH--C
T ss_pred HHHHhhcCCCceEEEEccCCCccchh---hhcCCCceEecCc-----cCC--ch--hh----------HHHHHHHHh--C
Confidence 3322 235579999999999875422 2334555544322 000 00 00 001122222 2
Q ss_pred CCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCcccccc
Q 007402 283 QKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKS 362 (605)
Q Consensus 283 ~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~ 362 (605)
.+++||||+++..|+.++..|...|+.++.+|+++. ..+++.|++|+.+||||||+++
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~------------------ 245 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISE------------------ 245 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGG------------------
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHH------------------
Confidence 679999999999999999999999999999999874 5789999999999999999977
Q ss_pred cCCCCCccccccccccccccCCccEEEEeC--------------------CCCCchhHHHhhcccccCCC-CccEEEEeC
Q 007402 363 KKHPKAKLDSEFGVVRGIDFKNVHTVINFE--------------------MPQNAAGYVHRIGRTGRAYN-TGASVSLVS 421 (605)
Q Consensus 363 ~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd--------------------~P~s~~~yiqRiGRtgR~g~-~G~ai~~v~ 421 (605)
+|||+|+ ++||||| +|.|..+|+||+|||||.|. .|.+++|+.
T Consensus 246 ---------------~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~ 309 (451)
T 2jlq_A 246 ---------------MGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSG 309 (451)
T ss_dssp ---------------SSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred ---------------hCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeC
Confidence 8999999 9999999 99999999999999999998 888988875
Q ss_pred C
Q 007402 422 P 422 (605)
Q Consensus 422 ~ 422 (605)
.
T Consensus 310 ~ 310 (451)
T 2jlq_A 310 D 310 (451)
T ss_dssp C
T ss_pred C
Confidence 4
No 41
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=9.1e-39 Score=391.94 Aligned_cols=342 Identities=17% Similarity=0.207 Sum_probs=260.0
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHhCC-CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHH
Q 007402 33 LDLRLVHALNKKGIQKPTLIQQASIPLILEG-KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTREL 111 (605)
Q Consensus 33 L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~g-kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreL 111 (605)
|.....++|...+|..++|+|.++++.++.+ ++++++||||||||++|.+|+++.+... .+.++||++|+++|
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~------~~~kavyi~P~raL 984 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS------SEGRCVYITPMEAL 984 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC------TTCCEEEECSCHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhC------CCCEEEEEcChHHH
Confidence 5677889999999999999999999999865 6799999999999999999999998873 35679999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcc
Q 007402 112 CQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 191 (605)
Q Consensus 112 a~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad 191 (605)
|.|+++.+.+.+. ...++++..++|+.+.... ....++|+|+||+++..++.+.. ....++++++||+||+|
T Consensus 985 a~q~~~~~~~~f~---~~~g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~~~--~~~~l~~v~lvViDE~H 1056 (1724)
T 4f92_B 985 AEQVYMDWYEKFQ---DRLNKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRRWK--QRKNVQNINLFVVDEVH 1056 (1724)
T ss_dssp HHHHHHHHHHHHT---TTSCCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTTTT--TCHHHHSCSEEEECCGG
T ss_pred HHHHHHHHHHHhc---hhcCCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhCcc--cccccceeeEEEeechh
Confidence 9999999876542 2236788888887654322 22468999999999987776543 23457889999999999
Q ss_pred hhccCCcHHHHHH-------HHhhCCCCceEEEEeeecChhHHHHHHHh-cCCCeEEEcCCccCccccccCCCcEEEEEE
Q 007402 192 LLLSYGYEDDLKA-------LSAVIPRGCQCLLMSATSSSDVDKLKKLI-LHNPYILTLPEVGDVKDEVIPKNVQQFWIS 263 (605)
Q Consensus 192 ~i~~~g~~~~l~~-------i~~~lp~~~q~il~SATl~~~v~~l~~~~-l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~ 263 (605)
++.+. ....+.. +...+++..|+|+||||+++. ..+.+.. .....+..+.. ...+..+..++..
T Consensus 1057 ~l~d~-rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~-~dla~WL~~~~~~~~~~~~------~~RPvpL~~~i~~ 1128 (1724)
T 4f92_B 1057 LIGGE-NGPVLEVICSRMRYISSQIERPIRIVALSSSLSNA-KDVAHWLGCSATSTFNFHP------NVRPVPLELHIQG 1128 (1724)
T ss_dssp GGGST-THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTH-HHHHHHHTCCSTTEEECCG------GGCSSCEEEEEEE
T ss_pred hcCCC-CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCH-HHHHHHhCCCCCCeEEeCC------CCCCCCeEEEEEe
Confidence 88764 3443333 334567889999999999864 4454443 33333333322 2334456655544
Q ss_pred ccccchH-------HHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHc------------------------------
Q 007402 264 CSERDKL-------LYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKF------------------------------ 306 (605)
Q Consensus 264 ~~~~~k~-------~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~------------------------------ 306 (605)
.+..... ..++..+......+++||||+|+..|+.++..|...
T Consensus 1129 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L 1208 (1724)
T 4f92_B 1129 FNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTL 1208 (1724)
T ss_dssp ECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHH
T ss_pred ccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHH
Confidence 4322221 223444445556789999999999998887666321
Q ss_pred ----CCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCcccccccccccccc
Q 007402 307 ----GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDF 382 (605)
Q Consensus 307 ----gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~ 382 (605)
...++++|++|++.+|..+++.|.+|.++|||||++++ +|||+
T Consensus 1209 ~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA---------------------------------~GVnl 1255 (1724)
T 4f92_B 1209 KETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLC---------------------------------WGMNV 1255 (1724)
T ss_dssp HHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGS---------------------------------SSCCC
T ss_pred HHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHH---------------------------------cCCCC
Confidence 24588999999999999999999999999999999976 89999
Q ss_pred CCccEEEE----eC------CCCCchhHHHhhcccccCCC--CccEEEEeCCchhhHHH
Q 007402 383 KNVHTVIN----FE------MPQNAAGYVHRIGRTGRAYN--TGASVSLVSPDEMKIFE 429 (605)
Q Consensus 383 ~~v~~VI~----fd------~P~s~~~yiqRiGRtgR~g~--~G~ai~~v~~~e~~~~~ 429 (605)
|.+.+||. || .|.++.+|+||+|||||.|. .|.|++|+.+.+...+.
T Consensus 1256 Pa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~ 1314 (1724)
T 4f92_B 1256 AAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFK 1314 (1724)
T ss_dssp CBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHH
T ss_pred CccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecchHHHHHH
Confidence 99999983 33 46789999999999999987 78899999887664443
No 42
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=9.5e-40 Score=361.23 Aligned_cols=317 Identities=14% Similarity=0.135 Sum_probs=235.9
Q ss_pred CCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHH
Q 007402 46 IQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIEL 125 (605)
Q Consensus 46 ~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~ 125 (605)
...|+|+|.+||+.++++++++++++||+|||.+|++|+...+... ..++||||||++|+.|+++.+..+..+
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~-------~~~vlvl~P~~~L~~Q~~~~~~~~~~~ 183 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY-------EGKILIIVPTTALTTQMADDFVDYRLF 183 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHC-------SSEEEEEESSHHHHHHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCC-------CCeEEEEECcHHHHHHHHHHHHHhhcC
Confidence 3489999999999999999999999999999999999988876542 348999999999999999999876332
Q ss_pred hcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCcHHHHHHH
Q 007402 126 CKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL 205 (605)
Q Consensus 126 ~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~~~l~~i 205 (605)
. .+.+..+.++.+...+ +...++|+|+||+.+... . ...+.++++|||||||++.. ..+..+
T Consensus 184 ~----~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~---~----~~~~~~~~liIiDE~H~~~~----~~~~~i 245 (510)
T 2oca_A 184 S----HAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ---P----KEWFSQFGMMMNDECHLATG----KSISSI 245 (510)
T ss_dssp C----GGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS---C----GGGGGGEEEEEEETGGGCCH----HHHHHH
T ss_pred C----ccceEEEecCCccccc---cccCCcEEEEeHHHHhhc---h----hhhhhcCCEEEEECCcCCCc----ccHHHH
Confidence 2 4567777777654433 556899999999976432 1 25567899999999999875 567888
Q ss_pred HhhCCCCceEEEEeeecChhHHHHHH-HhcCCCeEEEcCCccCcccc-ccCCCcEEEEEEccc-----------------
Q 007402 206 SAVIPRGCQCLLMSATSSSDVDKLKK-LILHNPYILTLPEVGDVKDE-VIPKNVQQFWISCSE----------------- 266 (605)
Q Consensus 206 ~~~lp~~~q~il~SATl~~~v~~l~~-~~l~~p~~i~l~~~~~~~~~-~~~~~l~q~~~~~~~----------------- 266 (605)
+..++...++++||||+++....+.. ..+.+|..+.+......... ..+..+....+..+.
T Consensus 246 l~~~~~~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (510)
T 2oca_A 246 ISGLNNCMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKI 325 (510)
T ss_dssp GGGCTTCCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHH
T ss_pred HHhcccCcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHH
Confidence 88888889999999999776533222 22334544433321110000 111112222222211
Q ss_pred ----cchHHHHHHHHHhhc-C-CCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEc
Q 007402 267 ----RDKLLYILTLLKLEL-V-QKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIAT 340 (605)
Q Consensus 267 ----~~k~~~l~~llk~~~-~-~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaT 340 (605)
..+...+..++.... . ..++||||+ ++.+..++..|...+.++..+||+++...|..+++.|++|.++|||||
T Consensus 326 ~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T 404 (510)
T 2oca_A 326 ITGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVAS 404 (510)
T ss_dssp HHTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEE
T ss_pred HhccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEE
Confidence 112233334333322 2 335566665 899999999999998899999999999999999999999999999999
Q ss_pred -CCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCccEEEE
Q 007402 341 -DDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSL 419 (605)
Q Consensus 341 -d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ai~~ 419 (605)
+.++ +|+|+|++++||++|+|+++..|+||+||+||.|+.|.++++
T Consensus 405 ~~~~~---------------------------------~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i 451 (510)
T 2oca_A 405 YGVFS---------------------------------TGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATV 451 (510)
T ss_dssp HHHHH---------------------------------HSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEE
T ss_pred cChhh---------------------------------cccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEE
Confidence 9865 799999999999999999999999999999999998866666
Q ss_pred eC
Q 007402 420 VS 421 (605)
Q Consensus 420 v~ 421 (605)
+.
T Consensus 452 ~~ 453 (510)
T 2oca_A 452 WD 453 (510)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 43
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=5.8e-39 Score=393.65 Aligned_cols=336 Identities=18% Similarity=0.255 Sum_probs=254.4
Q ss_pred CCCCChHHHHHHHHHHhC-CCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCC---CCCCCeEEEEcCcHHHHHHHHHHHH
Q 007402 45 GIQKPTLIQQASIPLILE-GKDVVARAKTGSGKTFAYLLPLLHRLFNESSPK---SKLAPAALVLVPTRELCQQVYSEVM 120 (605)
Q Consensus 45 g~~~pt~iQ~~aIp~~l~-gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~---~~~~~~~LilvPtreLa~Qv~~~~~ 120 (605)
||++++++|++++|.+++ ++|+|++||||||||++|.+|+++.+....... ...+.++||++|+++||.|+++.+.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 899999999999999885 689999999999999999999999998643322 2457899999999999999999998
Q ss_pred HHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCcHH
Q 007402 121 ALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYED 200 (605)
Q Consensus 121 ~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~~ 200 (605)
+.+... +++|..++|+.+.... ....++|+|+||+++..++.+.. ....++.+++|||||+|.+.+ ....
T Consensus 156 ~~~~~~----gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~--~~~~l~~v~~vIiDEvH~l~d-~RG~ 225 (1724)
T 4f92_B 156 KRLATY----GITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGG--ERTYTQLVRLIILDEIHLLHD-DRGP 225 (1724)
T ss_dssp HHHTTT----TCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSST--THHHHTTEEEEEETTGGGGGS-TTHH
T ss_pred HHHhhC----CCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCc--cchhhcCcCEEEEecchhcCC-ccHH
Confidence 877544 6889999998764321 12468999999999866665442 124578899999999998765 3444
Q ss_pred HHHHHH-------hhCCCCceEEEEeeecChhHHHHHHHhcCCC-eEEEcCCccCccccccCCCcEEEEEEccccchH--
Q 007402 201 DLKALS-------AVIPRGCQCLLMSATSSSDVDKLKKLILHNP-YILTLPEVGDVKDEVIPKNVQQFWISCSERDKL-- 270 (605)
Q Consensus 201 ~l~~i~-------~~lp~~~q~il~SATl~~~v~~l~~~~l~~p-~~i~l~~~~~~~~~~~~~~l~q~~~~~~~~~k~-- 270 (605)
.++.++ ..++...|+|+||||+++ .+.+.+..-.++ ..+.+-. ....+..+.+.++........
T Consensus 226 ~lE~~l~rl~~~~~~~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~-----~~~RPvpL~~~~~~~~~~~~~~~ 299 (1724)
T 4f92_B 226 VLEALVARAIRNIEMTQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFD-----NSFRPVPLEQTYVGITEKKAIKR 299 (1724)
T ss_dssp HHHHHHHHHHHHHHHHTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECC-----GGGCSSCEEEECCEECCCCHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEEEC-----CCCccCccEEEEeccCCcchhhh
Confidence 444443 346788999999999986 445555433222 1111111 223344677776655443221
Q ss_pred -----HHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHc-------------------------------------CC
Q 007402 271 -----LYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKF-------------------------------------GI 308 (605)
Q Consensus 271 -----~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~-------------------------------------gi 308 (605)
..++..+.....++++||||+|+..|+.++..|... ..
T Consensus 300 ~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 379 (1724)
T 4f92_B 300 FQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPY 379 (1724)
T ss_dssp HHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhc
Confidence 223333444445679999999999998888877531 23
Q ss_pred cEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEE
Q 007402 309 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTV 388 (605)
Q Consensus 309 ~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~V 388 (605)
.++++||+|+..+|..+++.|++|.++|||||++++ +|||+|.+++|
T Consensus 380 Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa---------------------------------~GVNlPa~~vV 426 (1724)
T 4f92_B 380 GFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLA---------------------------------WGVNLPAHTVI 426 (1724)
T ss_dssp TEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHH---------------------------------HHSCCCBSEEE
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhH---------------------------------hhCCCCCceEE
Confidence 578999999999999999999999999999999976 79999999999
Q ss_pred EE----eCC------CCCchhHHHhhcccccCCC--CccEEEEeCCchhhHHH
Q 007402 389 IN----FEM------PQNAAGYVHRIGRTGRAYN--TGASVSLVSPDEMKIFE 429 (605)
Q Consensus 389 I~----fd~------P~s~~~yiqRiGRtgR~g~--~G~ai~~v~~~e~~~~~ 429 (605)
|. ||. |.++.+|.||+|||||.|. .|.++.+..+.+...+.
T Consensus 427 I~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~ 479 (1724)
T 4f92_B 427 IKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYL 479 (1724)
T ss_dssp EECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHHH
T ss_pred EeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHHHHH
Confidence 95 553 5689999999999999775 79999999887765443
No 44
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=8.1e-40 Score=376.43 Aligned_cols=343 Identities=18% Similarity=0.181 Sum_probs=256.2
Q ss_pred HhhhhhhcccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCC-CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCC
Q 007402 17 EEEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEG-KDVVARAKTGSGKTFAYLLPLLHRLFNESSPK 95 (605)
Q Consensus 17 ~~~~~~~~~~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~g-kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~ 95 (605)
.......+..+|+++++++++.+.+...| ..|+++|+++|+.++.+ +++++.||||||||. ++|++.......
T Consensus 63 ~~~~~~~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~--- 136 (773)
T 2xau_A 63 AQKLEDGKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMP--- 136 (773)
T ss_dssp HHHHHHSSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCG---
T ss_pred ccccccCCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhccc---
Confidence 34445566789999999999999999988 78999999999988865 679999999999999 566662211100
Q ss_pred CCCCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCC
Q 007402 96 SKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQS 175 (605)
Q Consensus 96 ~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~ 175 (605)
...+.+++|++|+++|+.|+++.+.... +......+..-.... ......++|+|+||+++...+...
T Consensus 137 ~~~g~~ilvl~P~r~La~q~~~~l~~~~---~~~v~~~vG~~i~~~------~~~~~~~~I~v~T~G~l~r~l~~~---- 203 (773)
T 2xau_A 137 HLENTQVACTQPRRVAAMSVAQRVAEEM---DVKLGEEVGYSIRFE------NKTSNKTILKYMTDGMLLREAMED---- 203 (773)
T ss_dssp GGGTCEEEEEESCHHHHHHHHHHHHHHT---TCCBTTTEEEEETTE------EECCTTCSEEEEEHHHHHHHHHHS----
T ss_pred cCCCceEEecCchHHHHHHHHHHHHHHh---CCchhheecceeccc------cccCCCCCEEEECHHHHHHHHhhC----
Confidence 1125679999999999999998765543 111111111100000 001246799999999999888764
Q ss_pred cccCCCceEEEEeCcch-hccCC-cHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCcccccc
Q 007402 176 KSFSDSLKILVLDEADL-LLSYG-YEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVI 253 (605)
Q Consensus 176 ~~~l~~l~~lViDEad~-i~~~g-~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~ 253 (605)
..+.++++|||||||. .++.. ....+..+.... +..|+++||||++. +.+.. ++.++.++.+.. .
T Consensus 204 -~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~--~~l~~-~~~~~~vi~v~g--------r 270 (773)
T 2xau_A 204 -HDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR-PDLKIIIMSATLDA--EKFQR-YFNDAPLLAVPG--------R 270 (773)
T ss_dssp -TTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC-TTCEEEEEESCSCC--HHHHH-HTTSCCEEECCC--------C
T ss_pred -ccccCCCEEEecCccccccchHHHHHHHHHHHHhC-CCceEEEEeccccH--HHHHH-HhcCCCcccccC--------c
Confidence 5678999999999996 44422 233455555554 47899999999964 44554 445555555443 1
Q ss_pred CCCcEEEEEEccccchHHHHH-HHHHh--hcCCCeEEEEecchhHHHHHHHHHHH-----------cCCcEEEEcCCCCH
Q 007402 254 PKNVQQFWISCSERDKLLYIL-TLLKL--ELVQKKALIFTNTIDMAFRLKLFLEK-----------FGIKSAILNAELPQ 319 (605)
Q Consensus 254 ~~~l~q~~~~~~~~~k~~~l~-~llk~--~~~~~k~IIFv~s~~~~~~L~~~L~~-----------~gi~~~~l~~~l~~ 319 (605)
...+.++|..+...+.....+ .++.. ....+++||||+++..++.++..|.. .++.++.+||+|+.
T Consensus 271 ~~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~ 350 (773)
T 2xau_A 271 TYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPP 350 (773)
T ss_dssp CCCEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCH
T ss_pred ccceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCH
Confidence 125677777666655443222 22221 22478999999999999999999985 57889999999999
Q ss_pred HHHHHHHHHHH-----cCCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCC-
Q 007402 320 NSRLHILEEFN-----AGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEM- 393 (605)
Q Consensus 320 ~~R~~i~~~F~-----~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~- 393 (605)
.+|..+++.|. .|..+|||||++++ +|||+++|++||++|+
T Consensus 351 ~eR~~v~~~f~~~~~~~g~~kVlVAT~iae---------------------------------~GidIp~v~~VId~g~~ 397 (773)
T 2xau_A 351 HQQQRIFEPAPESHNGRPGRKVVISTNIAE---------------------------------TSLTIDGIVYVVDPGFS 397 (773)
T ss_dssp HHHGGGGSCCCCCSSSSCCEEEEEECTHHH---------------------------------HTCCCTTEEEEEECSEE
T ss_pred HHHHHHHhhcccccCCCCceEEEEeCcHHH---------------------------------hCcCcCCeEEEEeCCCc
Confidence 99999999999 99999999999977 8999999999999888
Q ss_pred -----------------CCCchhHHHhhcccccCCCCccEEEEeCCchh
Q 007402 394 -----------------PQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM 425 (605)
Q Consensus 394 -----------------P~s~~~yiqRiGRtgR~g~~G~ai~~v~~~e~ 425 (605)
|.|..+|+||+|||||. .+|.|+.|+++.+.
T Consensus 398 k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 398 KQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp EEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred cceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 89999999999999999 89999999987654
No 45
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=3.2e-38 Score=315.20 Aligned_cols=216 Identities=31% Similarity=0.428 Sum_probs=198.1
Q ss_pred hhhcccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCC
Q 007402 21 EAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAP 100 (605)
Q Consensus 21 ~~~~~~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~ 100 (605)
.+.+..+|++++|++.++++|.++||..||++|.++||.+++|+|+++.||||||||++|++|+++.+..........++
T Consensus 24 ~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~ 103 (242)
T 3fe2_A 24 CPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGP 103 (242)
T ss_dssp CCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCC
T ss_pred CCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCC
Confidence 45667899999999999999999999999999999999999999999999999999999999999998865433334578
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCC
Q 007402 101 AALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD 180 (605)
Q Consensus 101 ~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~ 180 (605)
++||++||++|+.|+++.+..+...+ ++.+..+.|+.+...+...+..+++|+|+||+++.+++..+. ..+.
T Consensus 104 ~~lil~Pt~~L~~Q~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~----~~~~ 175 (242)
T 3fe2_A 104 ICLVLAPTRELAQQVQQVAAEYCRAC----RLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGK----TNLR 175 (242)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTS----CCCT
T ss_pred EEEEEeCcHHHHHHHHHHHHHHHhhc----CceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCC----CCcc
Confidence 89999999999999999999998876 678888999999888888788889999999999999998764 5688
Q ss_pred CceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCC
Q 007402 181 SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPE 244 (605)
Q Consensus 181 ~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~ 244 (605)
++++|||||||+++++||...+..++..+++.+|+++||||+++.+..+...++++|+.+.+..
T Consensus 176 ~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~ 239 (242)
T 3fe2_A 176 RTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGA 239 (242)
T ss_dssp TCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC
T ss_pred cccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 9999999999999999999999999999999999999999999999999999999999998765
No 46
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=2.1e-41 Score=383.11 Aligned_cols=302 Identities=19% Similarity=0.244 Sum_probs=217.8
Q ss_pred HHHHCCCC-----CChHHHH-----HHHHHHh------CCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEE
Q 007402 40 ALNKKGIQ-----KPTLIQQ-----ASIPLIL------EGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAAL 103 (605)
Q Consensus 40 al~~~g~~-----~pt~iQ~-----~aIp~~l------~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~L 103 (605)
+|..+||. .||++|+ ++||.++ .|+|+|++||||||||++|++|+++.+... +.++|
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~-------~~~~l 274 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK-------RLRTA 274 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT-------TCCEE
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC-------CCcEE
Confidence 56667887 9999999 9999998 899999999999999999999999987652 57899
Q ss_pred EEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCC----CCcccC
Q 007402 104 VLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVL----QSKSFS 179 (605)
Q Consensus 104 ilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~----~~~~~l 179 (605)
||+||++||.|+++.+..+ .+.. ..+. +. .++||+++++++..+.+ .....+
T Consensus 275 ilaPTr~La~Q~~~~l~~~--------~i~~--~~~~---------l~-----~v~tp~~ll~~l~~~~l~~~l~~~~~l 330 (673)
T 2wv9_A 275 VLAPTRVVAAEMAEALRGL--------PVRY--LTPA---------VQ-----REHSGNEIVDVMCHATLTHRLMSPLRV 330 (673)
T ss_dssp EEESSHHHHHHHHHHTTTS--------CCEE--CCC-----------------CCCCSCCCEEEEEHHHHHHHHHSSSCC
T ss_pred EEccHHHHHHHHHHHHhcC--------Ceee--eccc---------cc-----ccCCHHHHHHHHHhhhhHHHHhccccc
Confidence 9999999999999887643 2221 1110 00 15677665433332210 001357
Q ss_pred CCceEEEEeCcchhccCCcHHHHHHHHhhCC-CCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcE
Q 007402 180 DSLKILVLDEADLLLSYGYEDDLKALSAVIP-RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ 258 (605)
Q Consensus 180 ~~l~~lViDEad~i~~~g~~~~l~~i~~~lp-~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~ 258 (605)
.++++|||||||++ +..+...+..+...++ ...|+++||||++..+..+.. .++.+..+..
T Consensus 331 ~~l~lvViDEaH~~-~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~---~~~~i~~v~~-------------- 392 (673)
T 2wv9_A 331 PNYNLFVMDEAHFT-DPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPD---TNSPVHDVSS-------------- 392 (673)
T ss_dssp CCCSEEEEESTTCC-CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCC---CSSCEEEEEC--------------
T ss_pred ccceEEEEeCCccc-CccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhcc---cCCceEEEee--------------
Confidence 88999999999998 2222334444444443 679999999999866432211 1111111110
Q ss_pred EEEEEccccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEE
Q 007402 259 QFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLI 338 (605)
Q Consensus 259 q~~~~~~~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLI 338 (605)
.......... +..+.. ..+++||||++++.++.++..|...++.+..+||+ +|..+++.|++|+++|||
T Consensus 393 ----~~~~~~~~~~-l~~l~~--~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLV 461 (673)
T 2wv9_A 393 ----EIPDRAWSSG-FEWITD--YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVI 461 (673)
T ss_dssp ----CCCSSCCSSC-CHHHHS--CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEE
T ss_pred ----ecCHHHHHHH-HHHHHh--CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEE
Confidence 0111111111 122221 37899999999999999999999999999999994 789999999999999999
Q ss_pred EcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEE--------------------eCCCCCch
Q 007402 339 ATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN--------------------FEMPQNAA 398 (605)
Q Consensus 339 aTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~--------------------fd~P~s~~ 398 (605)
||++++ +|||+| +++||| ||+|.+..
T Consensus 462 aTdv~e---------------------------------~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~ 507 (673)
T 2wv9_A 462 TTDISE---------------------------------MGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSA 507 (673)
T ss_dssp ECGGGG---------------------------------TTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHH
T ss_pred ECchhh---------------------------------cceeeC-CcEEEECCCcccceeeecccccceecccCCCCHH
Confidence 999976 899999 999998 67999999
Q ss_pred hHHHhhcccccC-CCCccEEEEe---CCchhhHHHHHHHHH
Q 007402 399 GYVHRIGRTGRA-YNTGASVSLV---SPDEMKIFEEIKSFV 435 (605)
Q Consensus 399 ~yiqRiGRtgR~-g~~G~ai~~v---~~~e~~~~~~~~~~l 435 (605)
+|+||+||+||+ |+.|.|++|+ .+.+...+..++..+
T Consensus 508 ~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~ 548 (673)
T 2wv9_A 508 SAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKI 548 (673)
T ss_dssp HHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred HHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHH
Confidence 999999999999 7899999996 566666666665543
No 47
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=3.7e-39 Score=353.08 Aligned_cols=296 Identities=20% Similarity=0.247 Sum_probs=222.3
Q ss_pred CChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHHhc
Q 007402 48 KPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCK 127 (605)
Q Consensus 48 ~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~ 127 (605)
.|+|+|.++++.+++++++++.++||+|||++|+.++... +.++||+|||++|+.|+++.+..+
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~-----------~~~~Lvl~P~~~L~~Q~~~~~~~~----- 156 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGIF----- 156 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH-----------CSCEEEEESSHHHHHHHHHHGGGG-----
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc-----------CCCEEEEECCHHHHHHHHHHHHhC-----
Confidence 6899999999999999999999999999999999998764 356999999999999999999883
Q ss_pred CCcceE-EEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCcHHHHHHHH
Q 007402 128 GQVQLK-VVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206 (605)
Q Consensus 128 ~~~~i~-v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~~~l~~i~ 206 (605)
++. +..++|+.. ..++|+|+||+.+...+.. ...++++|||||||.+.+.+|.. ++
T Consensus 157 ---~~~~v~~~~g~~~---------~~~~Ivv~T~~~l~~~~~~-------~~~~~~liIvDEaH~~~~~~~~~----~~ 213 (472)
T 2fwr_A 157 ---GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK-------LGNRFMLLIFDEVHHLPAESYVQ----IA 213 (472)
T ss_dssp ---CGGGEEEBSSSCB---------CCCSEEEEEHHHHHHTHHH-------HTTTCSEEEEETGGGTTSTTTHH----HH
T ss_pred ---CCcceEEECCCcC---------CcCCEEEEEcHHHHHHHHH-------hcCCCCEEEEECCcCCCChHHHH----HH
Confidence 456 777777653 3579999999998776542 12458999999999999888764 45
Q ss_pred hhCCCCceEEEEeeecCh-------------------hHHHHHHHhcCCCeEE--EcCCccCcc---------------c
Q 007402 207 AVIPRGCQCLLMSATSSS-------------------DVDKLKKLILHNPYIL--TLPEVGDVK---------------D 250 (605)
Q Consensus 207 ~~lp~~~q~il~SATl~~-------------------~v~~l~~~~l~~p~~i--~l~~~~~~~---------------~ 250 (605)
..++ ..+++++|||+.. ....+...++..+... .++...... .
T Consensus 214 ~~~~-~~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 292 (472)
T 2fwr_A 214 QMSI-APFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRA 292 (472)
T ss_dssp HTCC-CSEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSS
T ss_pred HhcC-CCeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHh
Confidence 5554 5789999999973 2222322223222211 111000000 0
Q ss_pred ----cccCCCcEEE---------------------EEEccccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHH
Q 007402 251 ----EVIPKNVQQF---------------------WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEK 305 (605)
Q Consensus 251 ----~~~~~~l~q~---------------------~~~~~~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~ 305 (605)
......+.++ .+.+....|...+..+++. ...+++||||++.+.++.++..|.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~k~lvF~~~~~~~~~l~~~l~- 370 (472)
T 2fwr_A 293 RGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILER-HRKDKIIIFTRHNELVYRISKVFL- 370 (472)
T ss_dssp CCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHH-TSSSCBCCBCSCHHHHHHHHHHTT-
T ss_pred cCccccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHh-CCCCcEEEEECCHHHHHHHHHHhC-
Confidence 0000000000 0113344567777777776 347899999999999999998873
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCc
Q 007402 306 FGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 385 (605)
Q Consensus 306 ~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v 385 (605)
+..+||+++..+|..+++.|++|.++|||||++++ +|+|+|++
T Consensus 371 ----~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~---------------------------------~Gldlp~~ 413 (472)
T 2fwr_A 371 ----IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLD---------------------------------EGIDVPDA 413 (472)
T ss_dssp ----CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCC---------------------------------SSSCSCCB
T ss_pred ----cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchh---------------------------------cCcccccC
Confidence 56799999999999999999999999999999976 79999999
Q ss_pred cEEEEeCCCCCchhHHHhhcccccCCCC-ccEE--EEeCC
Q 007402 386 HTVINFEMPQNAAGYVHRIGRTGRAYNT-GASV--SLVSP 422 (605)
Q Consensus 386 ~~VI~fd~P~s~~~yiqRiGRtgR~g~~-G~ai--~~v~~ 422 (605)
++||+||+|+|+..|+||+||+||.|+. +.++ .|++.
T Consensus 414 ~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~ 453 (472)
T 2fwr_A 414 NVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISR 453 (472)
T ss_dssp SEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEEC
T ss_pred cEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeC
Confidence 9999999999999999999999999964 4544 45544
No 48
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=7.4e-40 Score=355.27 Aligned_cols=283 Identities=19% Similarity=0.192 Sum_probs=199.0
Q ss_pred HHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEe
Q 007402 59 LILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLT 138 (605)
Q Consensus 59 ~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~ 138 (605)
.+++|+|+|++||||||||++|++|+++.+... +.++||++||++||.|+++.+..+ .+. ...
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~-------~~~~lil~Ptr~La~Q~~~~l~~~--------~v~--~~~ 66 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR-------RLRTLVLAPTRVVLSEMKEAFHGL--------DVK--FHT 66 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHTTTS--------CEE--EES
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc-------CCeEEEEcchHHHHHHHHHHHhcC--------CeE--Eec
Confidence 357899999999999999999999999987752 568999999999999999987633 332 111
Q ss_pred CCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCC----CCcccCCCceEEEEeCcchhccCCcHHHHHHHHhhC-CCCc
Q 007402 139 SSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVL----QSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVI-PRGC 213 (605)
Q Consensus 139 ~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~----~~~~~l~~l~~lViDEad~i~~~g~~~~l~~i~~~l-p~~~ 213 (605)
+... +|+||+++.+++..+.+ .....+.++++|||||||++ +.++...+..+...+ +...
T Consensus 67 ~~~~--------------~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~ 131 (440)
T 1yks_A 67 QAFS--------------AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANES 131 (440)
T ss_dssp SCCC--------------CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSC
T ss_pred ccce--------------eccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCc
Confidence 1110 38888877654443221 01134788999999999998 333333333333333 3579
Q ss_pred eEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEEEEEccccchHHHHHHHHHhhcCCCeEEEEecch
Q 007402 214 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTI 293 (605)
Q Consensus 214 q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~~~~~k~~~l~~llk~~~~~~k~IIFv~s~ 293 (605)
|+++||||+++.+..+.. .++.+..+ ...+........+..+.+ ..+++||||+++
T Consensus 132 ~~l~~SAT~~~~~~~~~~---~~~~~~~~------------------~~~~~~~~~~~~~~~l~~---~~~~~lVF~~s~ 187 (440)
T 1yks_A 132 ATILMTATPPGTSDEFPH---SNGEIEDV------------------QTDIPSEPWNTGHDWILA---DKRPTAWFLPSI 187 (440)
T ss_dssp EEEEECSSCTTCCCSSCC---CSSCEEEE------------------ECCCCSSCCSSSCHHHHH---CCSCEEEECSCH
T ss_pred eEEEEeCCCCchhhhhhh---cCCCeeEe------------------eeccChHHHHHHHHHHHh---cCCCEEEEeCCH
Confidence 999999999876432211 11111111 111111111111112222 267999999999
Q ss_pred hHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccc
Q 007402 294 DMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSE 373 (605)
Q Consensus 294 ~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (605)
+.|+.++..|...|+.+..+|| .+|..+++.|++|+++|||||++++
T Consensus 188 ~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e----------------------------- 234 (440)
T 1yks_A 188 RAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAE----------------------------- 234 (440)
T ss_dssp HHHHHHHHHHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTT-----------------------------
T ss_pred HHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhh-----------------------------
Confidence 9999999999999999999999 4588999999999999999999987
Q ss_pred cccccccccCCccEEEE-------------------eCCCCCchhHHHhhcccccC-CCCccEEEEe---CCchhhHHHH
Q 007402 374 FGVVRGIDFKNVHTVIN-------------------FEMPQNAAGYVHRIGRTGRA-YNTGASVSLV---SPDEMKIFEE 430 (605)
Q Consensus 374 ~gv~rGiD~~~v~~VI~-------------------fd~P~s~~~yiqRiGRtgR~-g~~G~ai~~v---~~~e~~~~~~ 430 (605)
+|||+| +++||+ ||.|.+..+|+||+||+||. |++|.|++|+ ++.+...+..
T Consensus 235 ----~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~ 309 (440)
T 1yks_A 235 ----MGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCW 309 (440)
T ss_dssp ----CCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHH
T ss_pred ----eeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhh
Confidence 899999 999996 99999999999999999997 7899999996 6777766766
Q ss_pred HHHHH
Q 007402 431 IKSFV 435 (605)
Q Consensus 431 ~~~~l 435 (605)
++..+
T Consensus 310 l~~~~ 314 (440)
T 1yks_A 310 LEASM 314 (440)
T ss_dssp HHHHH
T ss_pred hhHHh
Confidence 66654
No 49
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=3.1e-39 Score=360.73 Aligned_cols=277 Identities=19% Similarity=0.167 Sum_probs=211.4
Q ss_pred ChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHHhcC
Q 007402 49 PTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKG 128 (605)
Q Consensus 49 pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~ 128 (605)
+.++|+.+++.+..++|+++.||||||||.+|.+|+++. +.++||++|||+||.|+++.+.+..
T Consensus 218 ~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~-----------g~~vLVl~PTReLA~Qia~~l~~~~----- 281 (666)
T 3o8b_A 218 VFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ-----------GYKVLVLNPSVAATLGFGAYMSKAH----- 281 (666)
T ss_dssp SCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT-----------TCCEEEEESCHHHHHHHHHHHHHHH-----
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC-----------CCeEEEEcchHHHHHHHHHHHHHHh-----
Confidence 344555555555577899999999999999999998862 4579999999999999999776554
Q ss_pred CcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCcHHHHHHHHhh
Q 007402 129 QVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 208 (605)
Q Consensus 129 ~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~~~l~~i~~~ 208 (605)
+..+....|+.. +...++|+|+||++|+ ... ...++++++||||||| +++.+|...+..+++.
T Consensus 282 --g~~vg~~vG~~~-------~~~~~~IlV~TPGrLl---~~~----~l~l~~l~~lVlDEAH-~l~~~~~~~l~~Il~~ 344 (666)
T 3o8b_A 282 --GIDPNIRTGVRT-------ITTGAPVTYSTYGKFL---ADG----GCSGGAYDIIICDECH-STDSTTILGIGTVLDQ 344 (666)
T ss_dssp --SCCCEEECSSCE-------ECCCCSEEEEEHHHHH---HTT----SCCTTSCSEEEETTTT-CCSHHHHHHHHHHHHH
T ss_pred --CCCeeEEECcEe-------ccCCCCEEEECcHHHH---hCC----CcccCcccEEEEccch-hcCccHHHHHHHHHHh
Confidence 334445555543 4567999999999983 333 2667889999999996 5677888899999999
Q ss_pred CCCCce--EEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEEEEEccccchHHHHHHHHHhhcCCCeE
Q 007402 209 IPRGCQ--CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKA 286 (605)
Q Consensus 209 lp~~~q--~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~~~~~k~~~l~~llk~~~~~~k~ 286 (605)
++...| +++||||++..+. ...|.+..+.. . ....+ .++ ..... + .....+++
T Consensus 345 l~~~~~~llil~SAT~~~~i~------~~~p~i~~v~~-----~--~~~~i-~~~---~~~~~-------l-~~~~~~~v 399 (666)
T 3o8b_A 345 AETAGARLVVLATATPPGSVT------VPHPNIEEVAL-----S--NTGEI-PFY---GKAIP-------I-EAIRGGRH 399 (666)
T ss_dssp TTTTTCSEEEEEESSCTTCCC------CCCTTEEEEEC-----B--SCSSE-EET---TEEEC-------G-GGSSSSEE
T ss_pred hhhcCCceEEEECCCCCcccc------cCCcceEEEee-----c--ccchh-HHH---Hhhhh-------h-hhccCCcE
Confidence 987777 7888999997421 22333222211 0 00011 110 00000 0 12247899
Q ss_pred EEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCcccccccCCC
Q 007402 287 LIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHP 366 (605)
Q Consensus 287 IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (605)
||||++++.++.++..|++.|+.+..+||+|++.. |.++..+||||||+++
T Consensus 400 LVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVae---------------------- 450 (666)
T 3o8b_A 400 LIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALM---------------------- 450 (666)
T ss_dssp EEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHH----------------------
T ss_pred EEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHH----------------------
Confidence 99999999999999999999999999999999875 4567779999999976
Q ss_pred CCccccccccccccccCCccEEE----------EeC-----------CCCCchhHHHhhcccccCCCCccEEEEeCCchh
Q 007402 367 KAKLDSEFGVVRGIDFKNVHTVI----------NFE-----------MPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM 425 (605)
Q Consensus 367 ~~~~~~~~gv~rGiD~~~v~~VI----------~fd-----------~P~s~~~yiqRiGRtgR~g~~G~ai~~v~~~e~ 425 (605)
||||++ |++|| ||| +|.+.++|+||+||||| |++|. ++|+++.+.
T Consensus 451 -----------rGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~ 516 (666)
T 3o8b_A 451 -----------TGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGER 516 (666)
T ss_dssp -----------HHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCB
T ss_pred -----------ccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchh
Confidence 899996 99988 788 89999999999999999 99999 999998776
Q ss_pred h
Q 007402 426 K 426 (605)
Q Consensus 426 ~ 426 (605)
.
T Consensus 517 ~ 517 (666)
T 3o8b_A 517 P 517 (666)
T ss_dssp C
T ss_pred h
Confidence 4
No 50
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=1.1e-36 Score=305.63 Aligned_cols=211 Identities=38% Similarity=0.531 Sum_probs=191.1
Q ss_pred hhhcccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCC
Q 007402 21 EAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAP 100 (605)
Q Consensus 21 ~~~~~~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~ 100 (605)
......+|++++|++.++++|..+||..|+++|.++|+.+++|+|+++.||||||||++|++|+++.+... ..+.
T Consensus 38 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~-----~~~~ 112 (249)
T 3ber_A 38 EEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLET-----PQRL 112 (249)
T ss_dssp HHHHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-----CCSS
T ss_pred cccccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcC-----CCCc
Confidence 34456789999999999999999999999999999999999999999999999999999999999998873 3467
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCC
Q 007402 101 AALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD 180 (605)
Q Consensus 101 ~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~ 180 (605)
++||++||++|+.|+++.+..+...+ ++++..+.|+.+...+...+..+++|+|+||+++.+++.... ...+.
T Consensus 113 ~~lil~Ptr~L~~q~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~---~~~l~ 185 (249)
T 3ber_A 113 FALVLTPTRELAFQISEQFEALGSSI----GVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTK---GFNLR 185 (249)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHGGG----TCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHST---TCCCT
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhccC----CeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCC---CcCcc
Confidence 89999999999999999999887655 577888899988877777778899999999999999988632 25578
Q ss_pred CceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcC
Q 007402 181 SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLP 243 (605)
Q Consensus 181 ~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~ 243 (605)
++++|||||||++++++|...+..++..+++.+|+++||||+++.+..+...++.+|+.+.+.
T Consensus 186 ~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v~ 248 (249)
T 3ber_A 186 ALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS 248 (249)
T ss_dssp TCCEEEECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEECC
T ss_pred ccCEEEEcChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEec
Confidence 899999999999999999999999999999999999999999999999999999999988753
No 51
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=6e-37 Score=301.11 Aligned_cols=211 Identities=31% Similarity=0.503 Sum_probs=186.6
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEE
Q 007402 25 EKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALV 104 (605)
Q Consensus 25 ~~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~Li 104 (605)
..+|++++|++.++++|.++||..|+++|.++|+.+++|+|+++.||||||||++|++|+++.+... ..+.++||
T Consensus 3 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~-----~~~~~~li 77 (219)
T 1q0u_A 3 ETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE-----RAEVQAVI 77 (219)
T ss_dssp -CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT-----SCSCCEEE
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhC-----cCCceEEE
Confidence 4679999999999999999999999999999999999999999999999999999999999987652 34678999
Q ss_pred EcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceE
Q 007402 105 LVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKI 184 (605)
Q Consensus 105 lvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~ 184 (605)
++||++|+.|+++.+..+...+.....+.+..+.|+.+...+...+..+++|+|+||+++.+++..+. ..+.++++
T Consensus 78 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~----~~~~~~~~ 153 (219)
T 1q0u_A 78 TAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQA----LDVHTAHI 153 (219)
T ss_dssp ECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTC----CCGGGCCE
T ss_pred EcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCC----CCcCcceE
Confidence 99999999999999999887654322467788888876655555555689999999999999998764 56788999
Q ss_pred EEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCC
Q 007402 185 LVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPE 244 (605)
Q Consensus 185 lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~ 244 (605)
+||||||++.+++|...+..++..+++.+|+++||||+++++..+.+.++.+|..+.+..
T Consensus 154 lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 154 LVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp EEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred EEEcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 999999999999999999999999999999999999999999999999999999887654
No 52
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=2e-38 Score=345.94 Aligned_cols=282 Identities=21% Similarity=0.251 Sum_probs=197.4
Q ss_pred CCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHH
Q 007402 45 GIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIE 124 (605)
Q Consensus 45 g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~ 124 (605)
|+.++..+| ...+..|+++|+.||||||||++|++|+++.++.. +.++||++||++||.|+++.+..+
T Consensus 6 g~~q~~~~~---~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~-------~~~~lvl~Ptr~La~Q~~~~l~g~-- 73 (459)
T 2z83_A 6 GGQQMGRGS---PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ-------RLRTAVLAPTRVVAAEMAEALRGL-- 73 (459)
T ss_dssp ------------CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT-------TCCEEEEECSHHHHHHHHHHTTTS--
T ss_pred cHHHHHHHH---HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC-------CCcEEEECchHHHHHHHHHHhcCc--
Confidence 455544444 33456678999999999999999999999988752 578999999999999999988621
Q ss_pred HhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcch-----hccCCcH
Q 007402 125 LCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADL-----LLSYGYE 199 (605)
Q Consensus 125 ~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~-----i~~~g~~ 199 (605)
.+. ...+.... .-....-+.+.|.+.+...+... ..+.++++|||||||. ++..+|.
T Consensus 74 ------~v~--~~~~~~~~-----~~t~~~~i~~~~~~~l~~~l~~~-----~~l~~~~~iViDEaH~~~~~~~~~~~~~ 135 (459)
T 2z83_A 74 ------PVR--YQTSAVQR-----EHQGNEIVDVMCHATLTHRLMSP-----NRVPNYNLFVMDEAHFTDPASIAARGYI 135 (459)
T ss_dssp ------CEE--ECC-------------CCCSEEEEEHHHHHHHHHSC-----C-CCCCSEEEESSTTCCSHHHHHHHHHH
T ss_pred ------eEe--EEeccccc-----CCCCCcEEEEEchHHHHHHhhcc-----ccccCCcEEEEECCccCCchhhHHHHHH
Confidence 222 11111110 01123346677877777666644 4578899999999998 4444443
Q ss_pred HHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEEEEEccccchHHHHHHHHHh
Q 007402 200 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKL 279 (605)
Q Consensus 200 ~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~~~~~k~~~l~~llk~ 279 (605)
..+. .++..|+++||||++..+..+.. ...|+...... .+. ..+..++.++..
T Consensus 136 ~~~~-----~~~~~~~il~SAT~~~~~~~~~~--~~~pi~~~~~~-------------------~~~-~~~~~~~~~l~~ 188 (459)
T 2z83_A 136 ATKV-----ELGEAAAIFMTATPPGTTDPFPD--SNAPIHDLQDE-------------------IPD-RAWSSGYEWITE 188 (459)
T ss_dssp HHHH-----HTTSCEEEEECSSCTTCCCSSCC--CSSCEEEEECC-------------------CCS-SCCSSCCHHHHH
T ss_pred HHHh-----ccCCccEEEEEcCCCcchhhhcc--CCCCeEEeccc-------------------CCc-chhHHHHHHHHh
Confidence 3322 23579999999999976432211 12333221100 000 000011122222
Q ss_pred hcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCccc
Q 007402 280 ELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDS 359 (605)
Q Consensus 280 ~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~ 359 (605)
..+++||||+++..|+.++..|...|+.+..+|++ +|..+++.|++|.++|||||++++
T Consensus 189 --~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~--------------- 247 (459)
T 2z83_A 189 --YAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISE--------------- 247 (459)
T ss_dssp --CCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC----------------
T ss_pred --cCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHH---------------
Confidence 26899999999999999999999999999999995 677899999999999999999987
Q ss_pred ccccCCCCCccccccccccccccCCccEEEE--------------------eCCCCCchhHHHhhcccccCCC-CccEEE
Q 007402 360 RKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN--------------------FEMPQNAAGYVHRIGRTGRAYN-TGASVS 418 (605)
Q Consensus 360 ~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~--------------------fd~P~s~~~yiqRiGRtgR~g~-~G~ai~ 418 (605)
+|||+|+ ++||+ ||+|.|..+|+||+|||||.|. +|.+++
T Consensus 248 ------------------~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~ 308 (459)
T 2z83_A 248 ------------------MGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYH 308 (459)
T ss_dssp --------------------CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEE
T ss_pred ------------------hCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEE
Confidence 8999999 99999 7799999999999999999997 999999
Q ss_pred EeCCc
Q 007402 419 LVSPD 423 (605)
Q Consensus 419 ~v~~~ 423 (605)
|+++.
T Consensus 309 ~~~~~ 313 (459)
T 2z83_A 309 YGGAT 313 (459)
T ss_dssp ECSCC
T ss_pred EEccc
Confidence 99885
No 53
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=5.9e-37 Score=302.94 Aligned_cols=216 Identities=29% Similarity=0.406 Sum_probs=184.1
Q ss_pred hhhhhhcccCccc-CCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCC-
Q 007402 18 EEAEAEEEKSFEE-LGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPK- 95 (605)
Q Consensus 18 ~~~~~~~~~~f~~-~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~- 95 (605)
....+++..+|++ +++++.++++|.++||.+||++|.++|+.+++|+|+++.||||||||++|++|+++.+.......
T Consensus 11 ~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~ 90 (228)
T 3iuy_A 11 KRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISRE 90 (228)
T ss_dssp CCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC-------
T ss_pred cCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhh
Confidence 3345667788999 89999999999999999999999999999999999999999999999999999999886532211
Q ss_pred CCCCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCC
Q 007402 96 SKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQS 175 (605)
Q Consensus 96 ~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~ 175 (605)
...++++||++||++|+.|+++.+..+. .. ++.+..+.|+.+...+...+..+++|+|+||+++.+++..+.
T Consensus 91 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~--- 162 (228)
T 3iuy_A 91 QRNGPGMLVLTPTRELALHVEAECSKYS---YK--GLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNS--- 162 (228)
T ss_dssp --CCCSEEEECSSHHHHHHHHHHHHHHC---CT--TCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTC---
T ss_pred ccCCCcEEEEeCCHHHHHHHHHHHHHhc---cc--CceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCC---
Confidence 2357889999999999999999998874 22 678888888887777777777889999999999999988764
Q ss_pred cccCCCceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEc
Q 007402 176 KSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL 242 (605)
Q Consensus 176 ~~~l~~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l 242 (605)
..+.++++|||||||++++++|...+..++..+++.+|+++||||+++.+..+...++++|+.+.+
T Consensus 163 -~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~v 228 (228)
T 3iuy_A 163 -VNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVYV 228 (228)
T ss_dssp -CCCTTCCEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEC
T ss_pred -cCcccceEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEeC
Confidence 668889999999999999999999999999999999999999999999999999999999988753
No 54
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=4.3e-37 Score=317.02 Aligned_cols=207 Identities=30% Similarity=0.456 Sum_probs=182.0
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCC--CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCe
Q 007402 24 EEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEG--KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPA 101 (605)
Q Consensus 24 ~~~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~g--kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~ 101 (605)
...+|++++|++.++++|..+||..||++|.++||.++.| +|++++||||||||+||++|+++.+... ..+++
T Consensus 90 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~-----~~~~~ 164 (300)
T 3fmo_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-----NKYPQ 164 (300)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTT-----SCSCC
T ss_pred CcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhcc-----CCCce
Confidence 3578999999999999999999999999999999999998 9999999999999999999999988653 34678
Q ss_pred EEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCC
Q 007402 102 ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS 181 (605)
Q Consensus 102 ~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~ 181 (605)
+|||+||++||.|+++.+..+..++. .+.+..+.|+...... ....++|+|+||++|++++.... ...+++
T Consensus 165 ~lil~PtreLa~Q~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~---~~~~~~IlV~TP~~l~~~l~~~~---~~~l~~ 235 (300)
T 3fmo_B 165 CLCLSPTYELALQTGKVIEQMGKFYP---ELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLK---FIDPKK 235 (300)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTST---TCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTTC---CCCGGG
T ss_pred EEEEcCcHHHHHHHHHHHHHHHhhCC---CcEEEEEeCCccHhhh---hcCCCCEEEECHHHHHHHHHhcC---CCChhh
Confidence 99999999999999999998876543 4667777776543221 24578999999999999997632 256789
Q ss_pred ceEEEEeCcchhcc-CCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCC
Q 007402 182 LKILVLDEADLLLS-YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPE 244 (605)
Q Consensus 182 l~~lViDEad~i~~-~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~ 244 (605)
+++|||||||+|++ .+|...+..|...+++.+|+++||||+++.+..+...++.+|..|.+..
T Consensus 236 l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~~ 299 (300)
T 3fmo_B 236 IKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKR 299 (300)
T ss_dssp CSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEECC
T ss_pred ceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEecC
Confidence 99999999999998 7999999999999999999999999999999999999999999998753
No 55
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=4.7e-36 Score=291.33 Aligned_cols=203 Identities=37% Similarity=0.519 Sum_probs=184.8
Q ss_pred cCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEE
Q 007402 26 KSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVL 105 (605)
Q Consensus 26 ~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~Lil 105 (605)
.+|++++|++.++++|.++||..|+++|.++|+.+++|+|+++.||||||||++|++|+++.+... ..+.++||+
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-----~~~~~~lil 77 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK-----KDNIQAMVI 77 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT-----SCSCCEEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc-----CCCeeEEEE
Confidence 579999999999999999999999999999999999999999999999999999999999987542 346789999
Q ss_pred cCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEE
Q 007402 106 VPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKIL 185 (605)
Q Consensus 106 vPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~l 185 (605)
+||++|+.|+++.+..+...++ ++.+..+.|+.+...+...+...++|+|+||+++.+.+..+. ..+.++++|
T Consensus 78 ~Pt~~L~~q~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~----~~~~~~~~l 150 (206)
T 1vec_A 78 VPTRELALQVSQICIQVSKHMG---GAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGV----AKVDHVQMI 150 (206)
T ss_dssp CSCHHHHHHHHHHHHHHTTTSS---SCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTC----SCCTTCCEE
T ss_pred eCcHHHHHHHHHHHHHHHhhcC---CceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCC----cCcccCCEE
Confidence 9999999999999998865442 467888889988877777778889999999999999998764 567889999
Q ss_pred EEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEE
Q 007402 186 VLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL 240 (605)
Q Consensus 186 ViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i 240 (605)
|+||||++.+.+|...+..++..+++..|+++||||+++++..+...++.+|..+
T Consensus 151 ViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 151 VLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp EEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred EEEChHHhHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 9999999999999999999999999999999999999999999999999999865
No 56
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=1.1e-36 Score=306.09 Aligned_cols=224 Identities=29% Similarity=0.415 Sum_probs=188.3
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCC----CCCC
Q 007402 24 EEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPK----SKLA 99 (605)
Q Consensus 24 ~~~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~----~~~~ 99 (605)
+..+|++++|++.++++|..+||..|+++|.++|+.+++|+|+++.||||||||++|++|+++.+....... ...+
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~ 100 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAY 100 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBC
T ss_pred ccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCC
Confidence 567899999999999999999999999999999999999999999999999999999999999987643211 2335
Q ss_pred CeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccC
Q 007402 100 PAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS 179 (605)
Q Consensus 100 ~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l 179 (605)
+++||++||++|+.|+++.+..+.... .+.+..+.|+.+...+...+..+++|+|+||+++.+++..+. ..+
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~----~~~ 172 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNT----PLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNK----ISL 172 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTS----SCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTS----BCC
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccC----CceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCC----CCh
Confidence 789999999999999999999886543 577888888888777777788899999999999999998764 567
Q ss_pred CCceEEEEeCcchhccCCcHHHHHHHHhh--CCC--CceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCC
Q 007402 180 DSLKILVLDEADLLLSYGYEDDLKALSAV--IPR--GCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK 255 (605)
Q Consensus 180 ~~l~~lViDEad~i~~~g~~~~l~~i~~~--lp~--~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~ 255 (605)
.++++|||||||++++++|...+..++.. ++. ..|+++||||+++++..+...++.+|..+.+.. ......
T Consensus 173 ~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~-----~~~~~~ 247 (253)
T 1wrb_A 173 EFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGR-----VGSTSD 247 (253)
T ss_dssp TTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC------------
T ss_pred hhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECC-----CCCCcC
Confidence 88999999999999999999999999984 454 789999999999999999999999999998866 333344
Q ss_pred CcEEE
Q 007402 256 NVQQF 260 (605)
Q Consensus 256 ~l~q~ 260 (605)
++.|+
T Consensus 248 ~i~q~ 252 (253)
T 1wrb_A 248 SIKQE 252 (253)
T ss_dssp -----
T ss_pred Cceec
Confidence 56554
No 57
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=2.3e-36 Score=300.85 Aligned_cols=213 Identities=31% Similarity=0.438 Sum_probs=176.1
Q ss_pred hhhhhhcccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCC
Q 007402 18 EEAEAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSK 97 (605)
Q Consensus 18 ~~~~~~~~~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~ 97 (605)
.+..+....+|++++|++.++++|..+||..|+++|.++|+.+++|+|+++.||||||||++|++|+++.+... .
T Consensus 22 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~-----~ 96 (237)
T 3bor_A 22 ESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE-----F 96 (237)
T ss_dssp -----CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT-----S
T ss_pred cCCCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc-----C
Confidence 33445567889999999999999999999999999999999999999999999999999999999999987642 3
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcC-CCcEEEECCchHHHHHhcCCCCCc
Q 007402 98 LAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAG-PPDIVIATPGCMPKCLSTGVLQSK 176 (605)
Q Consensus 98 ~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~-~~dIvV~TP~~l~~~l~~~~~~~~ 176 (605)
.+.++||++||++|+.|+++.+..+.... ++.+..+.|+.....+...+.. .++|+|+||+++.+++..+.
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~---- 168 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYM----GATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRY---- 168 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTT----TCCEEEECC-------------CCCSEEEECHHHHHHHHHTTS----
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhc----CceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCC----
Confidence 46789999999999999999999876543 5667777787765555444444 49999999999999998764
Q ss_pred ccCCCceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcC
Q 007402 177 SFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLP 243 (605)
Q Consensus 177 ~~l~~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~ 243 (605)
..+.++++|||||||++++++|...+..++..++..+|+++||||+++++..+...++.+|..+.+.
T Consensus 169 ~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 169 LSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp SCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred cCcccCcEEEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 5678899999999999999999999999999999999999999999999999999999999988664
No 58
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=5.5e-36 Score=296.70 Aligned_cols=210 Identities=27% Similarity=0.399 Sum_probs=183.4
Q ss_pred hhhcccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCC
Q 007402 21 EAEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAP 100 (605)
Q Consensus 21 ~~~~~~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~ 100 (605)
.+.+..+|++++|++.++++|.++||..|+++|.++|+.+++|+|+++.||||||||++|++|+++.+... ..+.
T Consensus 19 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~-----~~~~ 93 (230)
T 2oxc_A 19 LLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE-----NLST 93 (230)
T ss_dssp -----CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT-----SCSC
T ss_pred CCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc-----CCCc
Confidence 44556889999999999999999999999999999999999999999999999999999999999988653 3467
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCC
Q 007402 101 AALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD 180 (605)
Q Consensus 101 ~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~ 180 (605)
++||++||++|+.|+++.+..+..... ++++..+.|+.....+...+ ..++|+|+||+++.+++..+. ..+.
T Consensus 94 ~~lil~Pt~~L~~q~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~----~~~~ 165 (230)
T 2oxc_A 94 QILILAPTREIAVQIHSVITAIGIKME---GLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDY----LNPG 165 (230)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTST---TCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTS----SCGG
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhcccC---CceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCC----cccc
Confidence 899999999999999999988764332 57788889998877666555 479999999999999998764 5677
Q ss_pred CceEEEEeCcchhccCC-cHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcC
Q 007402 181 SLKILVLDEADLLLSYG-YEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLP 243 (605)
Q Consensus 181 ~l~~lViDEad~i~~~g-~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~ 243 (605)
++++|||||||+++++| |...+..++..++...|+++||||+++.+..+...++.+|..+.++
T Consensus 166 ~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~~ 229 (230)
T 2oxc_A 166 SIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRLN 229 (230)
T ss_dssp GCCEEEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC-
T ss_pred cCCEEEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEcC
Confidence 89999999999999998 9999999999999999999999999999999999999999988653
No 59
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=1.8e-34 Score=317.78 Aligned_cols=323 Identities=20% Similarity=0.208 Sum_probs=245.7
Q ss_pred CCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHH
Q 007402 44 KGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALI 123 (605)
Q Consensus 44 ~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~ 123 (605)
+|. .|+++|-.....+.+|+ |+.+.||+|||+++.+|++-..+. |..+.|++||++||.|-++++..++
T Consensus 72 lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~--------G~~vhVvT~ndyLA~rdae~m~~l~ 140 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI--------GKGVHLVTVNDYLARRDALWMGPVY 140 (822)
T ss_dssp TSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT--------SSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc--------CCceEEEeccHHHHHhHHHHHHHHH
Confidence 676 69999999999998888 999999999999999999977666 5569999999999999999999999
Q ss_pred HHhcCCcceEEEEEeC--------------------------------------------------CCCHHHHHHHHcCC
Q 007402 124 ELCKGQVQLKVVQLTS--------------------------------------------------SMPASDLRAALAGP 153 (605)
Q Consensus 124 ~~~~~~~~i~v~~l~~--------------------------------------------------~~~~~~~~~~l~~~ 153 (605)
.++ ++++..+.+ +.+....+... .
T Consensus 141 ~~L----glsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY--~ 214 (822)
T 3jux_A 141 LFL----GLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAY--L 214 (822)
T ss_dssp HHT----TCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHH--H
T ss_pred HHh----CCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHh--c
Confidence 998 677777766 22222333333 4
Q ss_pred CcEEEECCchH-HHHHhcCCCC--CcccCCCceEEEEeCcchhccC---------C-------cHHHHHHHHhhC-----
Q 007402 154 PDIVIATPGCM-PKCLSTGVLQ--SKSFSDSLKILVLDEADLLLSY---------G-------YEDDLKALSAVI----- 209 (605)
Q Consensus 154 ~dIvV~TP~~l-~~~l~~~~~~--~~~~l~~l~~lViDEad~i~~~---------g-------~~~~l~~i~~~l----- 209 (605)
+||+++|..-+ .++|+.+... .......+.+.||||+|.++=. | ....+..+...+
T Consensus 215 ~DItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~d 294 (822)
T 3jux_A 215 CDVTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKD 294 (822)
T ss_dssp SSEEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTT
T ss_pred CCCEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCc
Confidence 79999998876 4566655321 1234577899999999976510 0 000011111100
Q ss_pred ---------------------------------------------------CCC--------------------------
Q 007402 210 ---------------------------------------------------PRG-------------------------- 212 (605)
Q Consensus 210 ---------------------------------------------------p~~-------------------------- 212 (605)
.++
T Consensus 295 y~vdek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~ 374 (822)
T 3jux_A 295 FTVDEKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRY 374 (822)
T ss_dssp EEECCSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCC
T ss_pred EEEEcccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcC
Confidence 000
Q ss_pred -----------------------------------ceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCc
Q 007402 213 -----------------------------------CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNV 257 (605)
Q Consensus 213 -----------------------------------~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l 257 (605)
.++.+||+|+......+.+.|- ..++.++. ..+....-
T Consensus 375 s~GLHQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~--l~vv~IPt-----nkp~~R~d 447 (822)
T 3jux_A 375 SGGLHQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYG--MEVVVIPT-----HKPMIRKD 447 (822)
T ss_dssp GGGHHHHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSC--CCEEECCC-----SSCCCCEE
T ss_pred chHHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhC--CeEEEECC-----CCCcceee
Confidence 2678999999988888887774 33555543 11111111
Q ss_pred EEEEEEccccchHHHHHHHHHhh-cCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcE
Q 007402 258 QQFWISCSERDKLLYILTLLKLE-LVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDY 336 (605)
Q Consensus 258 ~q~~~~~~~~~k~~~l~~llk~~-~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~i 336 (605)
.+..+.++..+|+..+...+... ....++||||+|+..++.|+..|.+.|+++.++||+..+.++..+.+.|..| .|
T Consensus 448 ~~d~vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~V 525 (822)
T 3jux_A 448 HDDLVFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MV 525 (822)
T ss_dssp CCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CE
T ss_pred cCcEEEecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eE
Confidence 22356678888998888877653 3467999999999999999999999999999999997666666666666666 69
Q ss_pred EEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccC--------CccEEEEeCCCCCchhHHHhhcccc
Q 007402 337 LIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK--------NVHTVINFEMPQNAAGYVHRIGRTG 408 (605)
Q Consensus 337 LIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~--------~v~~VI~fd~P~s~~~yiqRiGRtg 408 (605)
+||||+++ ||+|++ ++.+|||+++|.|.+.|+||+||||
T Consensus 526 tVATdmAg---------------------------------RGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTG 572 (822)
T 3jux_A 526 TIATNMAG---------------------------------RGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAG 572 (822)
T ss_dssp EEEETTTT---------------------------------TTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSS
T ss_pred EEEcchhh---------------------------------CCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccc
Confidence 99999987 999998 6679999999999999999999999
Q ss_pred cCCCCccEEEEeCCchh
Q 007402 409 RAYNTGASVSLVSPDEM 425 (605)
Q Consensus 409 R~g~~G~ai~~v~~~e~ 425 (605)
|+|.+|.+++|++.+|.
T Consensus 573 RqG~~G~a~~fvsleD~ 589 (822)
T 3jux_A 573 RQGDPGESIFFLSLEDD 589 (822)
T ss_dssp CSSCCCEEEEEEETTSH
T ss_pred cCCCCeeEEEEechhHH
Confidence 99999999999999875
No 60
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=1.2e-35 Score=288.43 Aligned_cols=205 Identities=40% Similarity=0.584 Sum_probs=183.8
Q ss_pred cCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEE
Q 007402 26 KSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVL 105 (605)
Q Consensus 26 ~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~Lil 105 (605)
.+|++++|++.++++|.++||..|+++|.++|+.+++|+|+++.+|||||||++|++|+++.+..... ...++++||+
T Consensus 1 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~--~~~~~~~lil 78 (207)
T 2gxq_A 1 MEFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQE--RGRKPRALVL 78 (207)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCC--TTCCCSEEEE
T ss_pred CChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccc--cCCCCcEEEE
Confidence 36999999999999999999999999999999999999999999999999999999999998865321 2346789999
Q ss_pred cCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEE
Q 007402 106 VPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKIL 185 (605)
Q Consensus 106 vPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~l 185 (605)
+||++|+.|+++.+..+.. .+++..+.|+.....+...+...++|+|+||+++.+++..+. ..+.+++++
T Consensus 79 ~P~~~L~~q~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~----~~~~~~~~i 148 (207)
T 2gxq_A 79 TPTRELALQVASELTAVAP------HLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGV----LDLSRVEVA 148 (207)
T ss_dssp CSSHHHHHHHHHHHHHHCT------TSCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTS----SCCTTCSEE
T ss_pred ECCHHHHHHHHHHHHHHhh------cceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCC----cchhhceEE
Confidence 9999999999999988753 366778888877766666666789999999999999998764 567889999
Q ss_pred EEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEc
Q 007402 186 VLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL 242 (605)
Q Consensus 186 ViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l 242 (605)
|+||||++.+.+|...+..++..++...|+++||||+++++..+.+.++.+|..+.+
T Consensus 149 ViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 149 VLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp EEESHHHHHHTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred EEEChhHhhccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 999999999999999999999999999999999999999999999999999998865
No 61
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.4e-35 Score=294.69 Aligned_cols=214 Identities=31% Similarity=0.457 Sum_probs=185.8
Q ss_pred hhcccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCe
Q 007402 22 AEEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPA 101 (605)
Q Consensus 22 ~~~~~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~ 101 (605)
..+..+|++++|+++++++|.++||..|+++|.++|+.+++|+|+++.||||||||++|++|+++.+...... ...+.+
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~-~~~~~~ 99 (236)
T 2pl3_A 21 VNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWT-STDGLG 99 (236)
T ss_dssp GGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCC-GGGCCC
T ss_pred CcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhccc-ccCCce
Confidence 3456789999999999999999999999999999999999999999999999999999999999988763221 234678
Q ss_pred EEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCC
Q 007402 102 ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS 181 (605)
Q Consensus 102 ~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~ 181 (605)
+||++||++|+.|+++.+..+.... ++.+..+.|+.+...+...+ ..++|+|+||+++.+++.... ...+.+
T Consensus 100 ~lil~Pt~~L~~q~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~---~~~~~~ 171 (236)
T 2pl3_A 100 VLIISPTRELAYQTFEVLRKVGKNH----DFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETV---SFHATD 171 (236)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTS----SCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCS---SCCCTT
T ss_pred EEEEeCCHHHHHHHHHHHHHHhCCC----CeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcC---Cccccc
Confidence 9999999999999999998876433 57788888887665555544 579999999999999887652 255788
Q ss_pred ceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCC
Q 007402 182 LKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPE 244 (605)
Q Consensus 182 l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~ 244 (605)
+++|||||||++++++|...+..++..++..+|+++||||+++.+..+.+.++.+|..+.+.+
T Consensus 172 ~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 234 (236)
T 2pl3_A 172 LQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHE 234 (236)
T ss_dssp CCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECCC
T ss_pred ccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeCC
Confidence 999999999999999999999999999999999999999999999999999999999988754
No 62
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.2e-35 Score=300.40 Aligned_cols=208 Identities=31% Similarity=0.463 Sum_probs=180.5
Q ss_pred cccCcccCC--CCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCe
Q 007402 24 EEKSFEELG--LDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPA 101 (605)
Q Consensus 24 ~~~~f~~~~--L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~ 101 (605)
...+|++++ |++.++++|.++||..|+++|.++|+.++.|+|++++||||||||++|++|+++.+...... ...+.+
T Consensus 50 ~~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~-~~~~~~ 128 (262)
T 3ly5_A 50 EDTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFM-PRNGTG 128 (262)
T ss_dssp GGGCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCC-GGGCCC
T ss_pred ccCChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhcccc-ccCCce
Confidence 356788887 99999999999999999999999999999999999999999999999999999988763221 124678
Q ss_pred EEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCC
Q 007402 102 ALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS 181 (605)
Q Consensus 102 ~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~ 181 (605)
+||++||++|+.|+++.+..+.... .+.+..+.|+.....+...+..+++|+|+||+++.+++.... ...+.+
T Consensus 129 ~lil~Pt~~La~q~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~---~~~~~~ 201 (262)
T 3ly5_A 129 VLILSPTRELAMQTFGVLKELMTHH----VHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTP---GFMYKN 201 (262)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTC----CSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCT---TCCCTT
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhhc----CceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccC---Cccccc
Confidence 9999999999999999999887544 567788889888877777777789999999999999988652 256788
Q ss_pred ceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeE
Q 007402 182 LKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYI 239 (605)
Q Consensus 182 l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~ 239 (605)
+++|||||||+++++||...+..++..++..+|+++||||+++++..+.+.++.++.+
T Consensus 202 l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~~ 259 (262)
T 3ly5_A 202 LQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPL 259 (262)
T ss_dssp CCEEEECSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCCE
T ss_pred CCEEEEcChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCCe
Confidence 9999999999999999999999999999999999999999999999999999886543
No 63
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=6.7e-36 Score=323.40 Aligned_cols=270 Identities=17% Similarity=0.228 Sum_probs=192.5
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCC
Q 007402 62 EGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSM 141 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~ 141 (605)
.|+++|++||||||||++|++|+++.++.. +.++||++||++|+.|+++.+. ++.+..+.+..
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~-------g~~~lvl~Pt~~La~Q~~~~~~----------~~~v~~~~~~~ 63 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKK-------RLRTVILAPTRVVASEMYEALR----------GEPIRYMTPAV 63 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHTT----------TSCEEEC----
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhC-------CCCEEEECcHHHHHHHHHHHhC----------CCeEEEEecCc
Confidence 478999999999999999999999777652 5689999999999999998765 22333333432
Q ss_pred CHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCcHHHHHHHHhhC-CCCceEEEEee
Q 007402 142 PASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVI-PRGCQCLLMSA 220 (605)
Q Consensus 142 ~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~~~l~~i~~~l-p~~~q~il~SA 220 (605)
.. .-....-+.+.|.+.+...+... ..+.++++|||||||++ +.++...+..+.... +..+|+++|||
T Consensus 64 ~~-----~~~~~~~~~~~~~~~l~~~l~~~-----~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SA 132 (431)
T 2v6i_A 64 QS-----ERTGNEIVDFMCHSTFTMKLLQG-----VRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTA 132 (431)
T ss_dssp ----------CCCSEEEEEHHHHHHHHHHT-----CCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEES
T ss_pred cc-----cCCCCceEEEEchHHHHHHHhcC-----ccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeC
Confidence 11 11123455667777776666553 55788999999999997 433444444444432 56899999999
Q ss_pred ecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEEEEEccccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHH
Q 007402 221 TSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLK 300 (605)
Q Consensus 221 Tl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~~~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~ 300 (605)
|+++.+..+. ..++.++.+.. .... .++..++..+.. ..+++||||++++.++.++
T Consensus 133 T~~~~~~~~~---~~~~~i~~~~~------------------~~~~-~~~~~~~~~l~~--~~~~~lVF~~~~~~~~~l~ 188 (431)
T 2v6i_A 133 TPPGTTEAFP---PSNSPIIDEET------------------RIPD-KAWNSGYEWITE--FDGRTVWFVHSIKQGAEIG 188 (431)
T ss_dssp SCTTCCCSSC---CCSSCCEEEEC------------------CCCS-SCCSSCCHHHHS--CSSCEEEECSSHHHHHHHH
T ss_pred CCCcchhhhc---CCCCceeeccc------------------cCCH-HHHHHHHHHHHc--CCCCEEEEeCCHHHHHHHH
Confidence 9997432111 01111111100 0011 111112233333 2679999999999999999
Q ss_pred HHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCcccccccccccc
Q 007402 301 LFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 380 (605)
Q Consensus 301 ~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGi 380 (605)
..|...++.+..+||+ .|..+++.|++|+++|||||++++ +||
T Consensus 189 ~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e---------------------------------~Gi 231 (431)
T 2v6i_A 189 TCLQKAGKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISE---------------------------------MGA 231 (431)
T ss_dssp HHHHHTTCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGG---------------------------------TSC
T ss_pred HHHHHcCCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHH---------------------------------cCc
Confidence 9999999999999997 578899999999999999999977 799
Q ss_pred ccCCccE-----------------EEEeCCCCCchhHHHhhcccccCCC-CccEEEEeC
Q 007402 381 DFKNVHT-----------------VINFEMPQNAAGYVHRIGRTGRAYN-TGASVSLVS 421 (605)
Q Consensus 381 D~~~v~~-----------------VI~fd~P~s~~~yiqRiGRtgR~g~-~G~ai~~v~ 421 (605)
|+| +.+ ||+++.|.+..+|+||+||+||.|. .|.+++|..
T Consensus 232 Dip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~~ 289 (431)
T 2v6i_A 232 NFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYSG 289 (431)
T ss_dssp CCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEECS
T ss_pred ccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEcC
Confidence 999 655 6889999999999999999999985 556666653
No 64
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=1.7e-35 Score=291.42 Aligned_cols=208 Identities=32% Similarity=0.470 Sum_probs=177.6
Q ss_pred hcccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeE
Q 007402 23 EEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAA 102 (605)
Q Consensus 23 ~~~~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~ 102 (605)
....+|++++|++.++++|.++||..|+++|.++|+.+++|+|+++.||||||||++|++|+++.+... ..+.++
T Consensus 11 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~-----~~~~~~ 85 (224)
T 1qde_A 11 KVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS-----VKAPQA 85 (224)
T ss_dssp CCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT-----CCSCCE
T ss_pred cccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc-----CCCceE
Confidence 446789999999999999999999999999999999999999999999999999999999999988652 346789
Q ss_pred EEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCc
Q 007402 103 LVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSL 182 (605)
Q Consensus 103 LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l 182 (605)
||++||++|+.|+++.+..+.... ++.+..+.|+.+...+...+. .++|+|+||+++.+++..+. ..+.++
T Consensus 86 lil~Pt~~L~~q~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~-~~~iiv~Tp~~l~~~~~~~~----~~~~~~ 156 (224)
T 1qde_A 86 LMLAPTRELALQIQKVVMALAFHM----DIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRR----FRTDKI 156 (224)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTS----CCCEEEECC----------CT-TCSEEEECHHHHHHHHHTTS----SCCTTC
T ss_pred EEEECCHHHHHHHHHHHHHHhccc----CceEEEEeCCcchHHHHhcCC-CCCEEEECHHHHHHHHHhCC----cchhhC
Confidence 999999999999999998876543 577888888876655555444 49999999999999988764 567889
Q ss_pred eEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCC
Q 007402 183 KILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPE 244 (605)
Q Consensus 183 ~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~ 244 (605)
++|||||||++.+++|...+..++..++...|+++||||+++++..+...++.+|..+.+..
T Consensus 157 ~~iViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~ 218 (224)
T 1qde_A 157 KMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKK 218 (224)
T ss_dssp CEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC---
T ss_pred cEEEEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999987754
No 65
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=1.4e-35 Score=333.84 Aligned_cols=313 Identities=14% Similarity=0.120 Sum_probs=192.2
Q ss_pred CCChHHHHHHHHHHhC----C-CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCC--CCCCCeEEEEcCcHHHHHHHH-HH
Q 007402 47 QKPTLIQQASIPLILE----G-KDVVARAKTGSGKTFAYLLPLLHRLFNESSPK--SKLAPAALVLVPTRELCQQVY-SE 118 (605)
Q Consensus 47 ~~pt~iQ~~aIp~~l~----g-kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~--~~~~~~~LilvPtreLa~Qv~-~~ 118 (605)
..|+++|.+||+.+++ | ++++++++||||||+++ ++++..++...... ...+.++||||||++|+.|++ +.
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~-~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~ 255 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVA-FQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKT 255 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHH-HHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------C
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHH-HHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 3699999999999886 5 66999999999999996 45556665532111 124788999999999999999 66
Q ss_pred HHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCc
Q 007402 119 VMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGY 198 (605)
Q Consensus 119 ~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~ 198 (605)
+..+. ..+..+.++ ......+|+|+||+++..++.............+++|||||||++...+
T Consensus 256 ~~~~~--------~~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~- 318 (590)
T 3h1t_A 256 FTPFG--------DARHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD- 318 (590)
T ss_dssp CTTTC--------SSEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC-------
T ss_pred HHhcc--------hhhhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-
Confidence 66442 223333332 1345789999999999887653322223455778999999999987543
Q ss_pred HHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeE------------------EEcCCccCccccc-c------
Q 007402 199 EDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYI------------------LTLPEVGDVKDEV-I------ 253 (605)
Q Consensus 199 ~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~------------------i~l~~~~~~~~~~-~------ 253 (605)
...+..++..++ ..++++||||+......-...++..++. +.+.......... .
T Consensus 319 ~~~~~~il~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (590)
T 3h1t_A 319 NSNWREILEYFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDR 397 (590)
T ss_dssp ---CHHHHHHST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC------------
T ss_pred hHHHHHHHHhCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccc
Confidence 355677778886 4789999999875432222222332222 1111000000000 0
Q ss_pred -CCCcEEEEEEccccc-------hHH----HHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCc--------EEEE
Q 007402 254 -PKNVQQFWISCSERD-------KLL----YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIK--------SAIL 313 (605)
Q Consensus 254 -~~~l~q~~~~~~~~~-------k~~----~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~--------~~~l 313 (605)
...+..........+ +.. .+...++.....+++||||++++.|..++..|...+.. ++.+
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i 477 (590)
T 3h1t_A 398 FGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARV 477 (590)
T ss_dssp -----------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEEC
T ss_pred cccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEE
Confidence 000000000011111 111 12333443344589999999999999999999876543 7789
Q ss_pred cCCCCHHHHHHHHHHHHcCCCc---EEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEE
Q 007402 314 NAELPQNSRLHILEEFNAGLFD---YLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN 390 (605)
Q Consensus 314 ~~~l~~~~R~~i~~~F~~g~~~---iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~ 390 (605)
||.++. .|..++++|++|..+ |||||++++ +|||+|+|++||+
T Consensus 478 ~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~---------------------------------~GiDip~v~~Vi~ 523 (590)
T 3h1t_A 478 TSEEGK-IGKGHLSRFQELETSTPVILTTSQLLT---------------------------------TGVDAPTCKNVVL 523 (590)
T ss_dssp SSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTT---------------------------------TTCCCTTEEEEEE
T ss_pred eCCChH-HHHHHHHHHhCCCCCCCEEEEECChhh---------------------------------cCccchheeEEEE
Confidence 999874 799999999998866 889999976 7999999999999
Q ss_pred eCCCCCchhHHHhhcccccCCC
Q 007402 391 FEMPQNAAGYVHRIGRTGRAYN 412 (605)
Q Consensus 391 fd~P~s~~~yiqRiGRtgR~g~ 412 (605)
+++|.|+..|+||+||+||.+.
T Consensus 524 ~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 524 ARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp ESCCCCHHHHHHHHTTSCCCBG
T ss_pred EecCCChHHHHHHHhhhcccCc
Confidence 9999999999999999999875
No 66
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=1.5e-34 Score=326.26 Aligned_cols=302 Identities=16% Similarity=0.179 Sum_probs=216.6
Q ss_pred CcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEc
Q 007402 27 SFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLV 106 (605)
Q Consensus 27 ~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~Lilv 106 (605)
.|..+. ....++++.++++ |. |......++.|++++++||||||||. ++++.+... ..++|++
T Consensus 124 ~fp~~e-~~d~l~~i~dl~~--p~--~~~p~ar~l~rk~vlv~apTGSGKT~----~al~~l~~~--------~~gl~l~ 186 (677)
T 3rc3_A 124 IFPVLD-CKDDLRKISDLRI--PP--NWYPDARAMQRKIIFHSGPTNSGKTY----HAIQKYFSA--------KSGVYCG 186 (677)
T ss_dssp HCGGGG-CHHHHHHHTBCCC--GG--GGCHHHHTSCCEEEEEECCTTSSHHH----HHHHHHHHS--------SSEEEEE
T ss_pred hCCCcC-CHHHHHHHhhccC--hh--hhCHHHHhcCCCEEEEEcCCCCCHHH----HHHHHHHhc--------CCeEEEe
Confidence 344444 4566677766654 43 33344567899999999999999998 555666552 2369999
Q ss_pred CcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEE
Q 007402 107 PTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILV 186 (605)
Q Consensus 107 PtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lV 186 (605)
|||+||.|+++.+... ++.+..++|+..... ..-....+++++|++.+ .....+++||
T Consensus 187 PtR~LA~Qi~~~l~~~--------g~~v~lltG~~~~iv--~TpGr~~~il~~T~e~~------------~l~~~v~lvV 244 (677)
T 3rc3_A 187 PLKLLAHEIFEKSNAA--------GVPCDLVTGEERVTV--QPNGKQASHVSCTVEMC------------SVTTPYEVAV 244 (677)
T ss_dssp SSHHHHHHHHHHHHHT--------TCCEEEECSSCEECC--STTCCCCSEEEEEGGGC------------CSSSCEEEEE
T ss_pred CHHHHHHHHHHHHHhc--------CCcEEEEECCeeEEe--cCCCcccceeEecHhHh------------hhcccCCEEE
Confidence 9999999999998765 567778888753200 00001144555554322 2346689999
Q ss_pred EeCcchhccCCcHHHHHHHHhhCC-CCceEEEEeeecChhHHHHHHHhcCCCeEEEcCCccCccccccCCCcEEEEEEcc
Q 007402 187 LDEADLLLSYGYEDDLKALSAVIP-RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 265 (605)
Q Consensus 187 iDEad~i~~~g~~~~l~~i~~~lp-~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~~ 265 (605)
|||||++++.++...+..++..++ ...|++++|||.+ .+..+.... ..+..+.... ....+.. ...
T Consensus 245 IDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~-~i~~l~~~~-~~~~~v~~~~--------r~~~l~~---~~~ 311 (677)
T 3rc3_A 245 IDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAID-LVMELMYTT-GEEVEVRDYK--------RLTPISV---LDH 311 (677)
T ss_dssp ECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGHH-HHHHHHHHH-TCCEEEEECC--------CSSCEEE---CSS
T ss_pred EecceecCCccchHHHHHHHHccCccceEEEeccchHH-HHHHHHHhc-CCceEEEEee--------ecchHHH---HHH
Confidence 999999999999999999999888 7889999999953 344444433 2333332111 0001100 000
Q ss_pred ccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHc--CCCcEEEEcCCC
Q 007402 266 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA--GLFDYLIATDDT 343 (605)
Q Consensus 266 ~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~--g~~~iLIaTd~~ 343 (605)
... . ........||||+++..++.++..|++.++.++++||+|++.+|..+++.|+. |.++|||||+++
T Consensus 312 ~l~-------~--l~~~~~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~ 382 (677)
T 3rc3_A 312 ALE-------S--LDNLRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAI 382 (677)
T ss_dssp CCC-------S--GGGCCTTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGG
T ss_pred HHH-------H--HHhcCCCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHH
Confidence 000 0 01113456899999999999999999999999999999999999999999999 899999999997
Q ss_pred CcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCC--------------CCCchhHHHhhccccc
Q 007402 344 QTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEM--------------PQNAAGYVHRIGRTGR 409 (605)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~--------------P~s~~~yiqRiGRtgR 409 (605)
+ +|||+ +|++||++|+ |.|..+|+||+|||||
T Consensus 383 e---------------------------------~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR 428 (677)
T 3rc3_A 383 G---------------------------------MGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGR 428 (677)
T ss_dssp G---------------------------------SSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTBTC
T ss_pred H---------------------------------CCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCCCC
Confidence 6 89999 9999999999 8899999999999999
Q ss_pred CCCC---ccEEEEeCCch
Q 007402 410 AYNT---GASVSLVSPDE 424 (605)
Q Consensus 410 ~g~~---G~ai~~v~~~e 424 (605)
.|.. |.++.+ .+.+
T Consensus 429 ~g~~g~~G~v~~l-~~~d 445 (677)
T 3rc3_A 429 FSSRFKEGEVTTM-NHED 445 (677)
T ss_dssp TTSSCSSEEEEES-STTH
T ss_pred CCCCCCCEEEEEE-ecch
Confidence 9975 544444 3444
No 67
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=8.1e-35 Score=285.87 Aligned_cols=206 Identities=25% Similarity=0.380 Sum_probs=181.1
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEE
Q 007402 24 EEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAAL 103 (605)
Q Consensus 24 ~~~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~L 103 (605)
...+|++++|++.++++|.++||..|+++|.++|+.+++|+|+++.+|||+|||++|++|+++.+... ..+.++|
T Consensus 12 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~-----~~~~~~l 86 (220)
T 1t6n_A 12 HSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-----TGQVSVL 86 (220)
T ss_dssp --CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC-----TTCCCEE
T ss_pred cCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc-----CCCEEEE
Confidence 34679999999999999999999999999999999999999999999999999999999999987542 2356899
Q ss_pred EEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHc-CCCcEEEECCchHHHHHhcCCCCCcccCCCc
Q 007402 104 VLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALA-GPPDIVIATPGCMPKCLSTGVLQSKSFSDSL 182 (605)
Q Consensus 104 ilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~-~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l 182 (605)
|++||++|+.|+++.+..+...+. ++++..+.|+.+...+...+. ..++|+|+||+++..++..+. ..+.++
T Consensus 87 il~Pt~~L~~q~~~~~~~~~~~~~---~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~----~~~~~~ 159 (220)
T 1t6n_A 87 VMCHTRELAFQISKEYERFSKYMP---NVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKS----LNLKHI 159 (220)
T ss_dssp EECSCHHHHHHHHHHHHHHTTTST---TCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTS----SCCTTC
T ss_pred EEeCCHHHHHHHHHHHHHHHhhCC---CceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCC----CCcccC
Confidence 999999999999999998765432 477888899888766655554 468999999999999988764 567889
Q ss_pred eEEEEeCcchhcc-CCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeEEE
Q 007402 183 KILVLDEADLLLS-YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILT 241 (605)
Q Consensus 183 ~~lViDEad~i~~-~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~ 241 (605)
+++|+||||++++ .+|...+..++..++...|+++||||+++.+..+.+.++.+|..+.
T Consensus 160 ~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 160 KHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp CEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred CEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 9999999999987 4888999999999999999999999999999999999999998775
No 68
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.8e-34 Score=288.31 Aligned_cols=214 Identities=29% Similarity=0.417 Sum_probs=177.6
Q ss_pred hhhcccCcccC----CCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCC
Q 007402 21 EAEEEKSFEEL----GLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKS 96 (605)
Q Consensus 21 ~~~~~~~f~~~----~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~ 96 (605)
.+.+..+|+++ +|++.++++|.++||..||++|.++|+.+++|+|+++.||||||||++|++|+++.+... .
T Consensus 20 ~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~----~ 95 (245)
T 3dkp_A 20 LPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQP----A 95 (245)
T ss_dssp CCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSC----C
T ss_pred CCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhc----c
Confidence 45566788887 899999999999999999999999999999999999999999999999999999988642 2
Q ss_pred CCCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHH-HHHHcCCCcEEEECCchHHHHHhcCCCCC
Q 007402 97 KLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDL-RAALAGPPDIVIATPGCMPKCLSTGVLQS 175 (605)
Q Consensus 97 ~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~-~~~l~~~~dIvV~TP~~l~~~l~~~~~~~ 175 (605)
..+.++||++||++|+.|+++.+..+.... ++.+..+.++...... ......+++|+|+||+++.+++.... .
T Consensus 96 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~--~ 169 (245)
T 3dkp_A 96 NKGFRALIISPTRELASQIHRELIKISEGT----GFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDP--P 169 (245)
T ss_dssp SSSCCEEEECSSHHHHHHHHHHHHHHTTTS----CCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSS--C
T ss_pred cCCceEEEEeCCHHHHHHHHHHHHHHhccc----CceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCC--C
Confidence 346789999999999999999999886544 4555555443221111 12234678999999999999998753 1
Q ss_pred cccCCCceEEEEeCcchhcc---CCcHHHHHHHHhhC-CCCceEEEEeeecChhHHHHHHHhcCCCeEEEcCC
Q 007402 176 KSFSDSLKILVLDEADLLLS---YGYEDDLKALSAVI-PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPE 244 (605)
Q Consensus 176 ~~~l~~l~~lViDEad~i~~---~g~~~~l~~i~~~l-p~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~ 244 (605)
...+.++++|||||||++++ .+|...+..++..+ +...|+++||||+++++..+.+.++++|+.+.+..
T Consensus 170 ~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~ 242 (245)
T 3dkp_A 170 GIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGA 242 (245)
T ss_dssp SCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC
T ss_pred CcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCC
Confidence 25678899999999999998 57889999988776 45789999999999999999999999999998765
No 69
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=4.9e-33 Score=327.98 Aligned_cols=326 Identities=17% Similarity=0.173 Sum_probs=224.7
Q ss_pred CCChHHHHHHHHHHhCC--CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHH
Q 007402 47 QKPTLIQQASIPLILEG--KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIE 124 (605)
Q Consensus 47 ~~pt~iQ~~aIp~~l~g--kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~ 124 (605)
..|+|+|.+++..++.. .++|+.++||+|||.+++..+.+.+.. ....++|||||+ .|+.||...+...+
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~------g~~~rvLIVvP~-sLl~Qw~~E~~~~f- 223 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS------GAAERVLIIVPE-TLQHQWLVEMLRRF- 223 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT------SSCCCEEEECCT-TTHHHHHHHHHHHS-
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh------CCCCeEEEEeCH-HHHHHHHHHHHHHh-
Confidence 46899999999988874 589999999999999998777665544 224479999999 99999999987654
Q ss_pred HhcCCcceEEEEEeCCCCHHHHHH--HHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCcH--H
Q 007402 125 LCKGQVQLKVVQLTSSMPASDLRA--ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE--D 200 (605)
Q Consensus 125 ~~~~~~~i~v~~l~~~~~~~~~~~--~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~--~ 200 (605)
++.+..+.++........ ......+|+|+|++.+....... ......++++|||||||++.+.+.. .
T Consensus 224 ------~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~---~~l~~~~~dlVIvDEAH~~kn~~~~~s~ 294 (968)
T 3dmq_A 224 ------NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRL---EHLCEAEWDLLVVDEAHHLVWSEDAPSR 294 (968)
T ss_dssp ------CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTT---HHHHTSCCCEEEECCSSCCCCBTTBCCH
T ss_pred ------CCCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHH---HHhhhcCCCEEEehhhHhhcCCCCcchH
Confidence 345555544321111111 11235799999988775321110 1133457899999999999755422 1
Q ss_pred HHHHHHhhCCCCceEEEEeeecCh-h---HHHHHHHhc----------------------------CC------------
Q 007402 201 DLKALSAVIPRGCQCLLMSATSSS-D---VDKLKKLIL----------------------------HN------------ 236 (605)
Q Consensus 201 ~l~~i~~~lp~~~q~il~SATl~~-~---v~~l~~~~l----------------------------~~------------ 236 (605)
....+........+++++|||+.. . +..+..... ..
T Consensus 295 ~~~~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~ 374 (968)
T 3dmq_A 295 EYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLG 374 (968)
T ss_dssp HHHHHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSST
T ss_pred HHHHHHHHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHH
Confidence 222333333345579999999842 1 111111100 00
Q ss_pred ----------------------------------------CeEEEcCCccCccccccCCCcEEEEE--------------
Q 007402 237 ----------------------------------------PYILTLPEVGDVKDEVIPKNVQQFWI-------------- 262 (605)
Q Consensus 237 ----------------------------------------p~~i~l~~~~~~~~~~~~~~l~q~~~-------------- 262 (605)
.+.+.... ... .......+..+.+
T Consensus 375 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r-~~i-~~~p~r~~~~~~l~~~~~~~~~~~~~~ 452 (968)
T 3dmq_A 375 EMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTR-NGV-KGFPKRELHTIKLPLPTQYQTAIKVSG 452 (968)
T ss_dssp TTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCT-TTC-CCCCCCCCCEEEECCCHHHHHHHHHHH
T ss_pred HHhcchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhh-hhh-cccChhheEeeecCCCHHHHHHHHHHh
Confidence 00000000 000 0000001111111
Q ss_pred -------------------------------EccccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHH-HcCCcE
Q 007402 263 -------------------------------SCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLE-KFGIKS 310 (605)
Q Consensus 263 -------------------------------~~~~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~-~~gi~~ 310 (605)
.+....|...+..+++. ...+++||||+++..+..+...|. ..|+++
T Consensus 453 ~~~~~~~~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~-~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~ 531 (968)
T 3dmq_A 453 IMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS-HRSQKVLVICAKAATALQLEQVLREREGIRA 531 (968)
T ss_dssp HTTCCSSGGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH-TSSSCCCEECSSTHHHHHHHHHHHTTTCCCE
T ss_pred hhhhhhhhHHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh-CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcE
Confidence 12334577778888775 457899999999999999999999 469999
Q ss_pred EEEcCCCCHHHHHHHHHHHHcCC--CcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEE
Q 007402 311 AILNAELPQNSRLHILEEFNAGL--FDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTV 388 (605)
Q Consensus 311 ~~l~~~l~~~~R~~i~~~F~~g~--~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~V 388 (605)
..+||+|++.+|..+++.|++|. ++|||||++++ +|||++++++|
T Consensus 532 ~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~---------------------------------~GlDl~~~~~V 578 (968)
T 3dmq_A 532 AVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGS---------------------------------EGRNFQFASHM 578 (968)
T ss_dssp EEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTT---------------------------------CSSCCTTCCEE
T ss_pred EEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhh---------------------------------cCCCcccCcEE
Confidence 99999999999999999999998 99999999876 79999999999
Q ss_pred EEeCCCCCchhHHHhhcccccCCCCccEEEEeCCchh
Q 007402 389 INFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM 425 (605)
Q Consensus 389 I~fd~P~s~~~yiqRiGRtgR~g~~G~ai~~v~~~e~ 425 (605)
|+||+|+++..|+||+||+||.|+.|.+++++...+.
T Consensus 579 I~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~ 615 (968)
T 3dmq_A 579 VMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEK 615 (968)
T ss_dssp ECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETT
T ss_pred EEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCC
Confidence 9999999999999999999999999987777655444
No 70
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=1.9e-31 Score=293.97 Aligned_cols=315 Identities=18% Similarity=0.219 Sum_probs=215.3
Q ss_pred CCChHHHHHHHHHHh----CCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHH
Q 007402 47 QKPTLIQQASIPLIL----EGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMAL 122 (605)
Q Consensus 47 ~~pt~iQ~~aIp~~l----~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l 122 (605)
..|+|+|.++++++. .++++|+.++||+|||++++. ++..+... ....++||+||+ .|+.||.+++.++
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~-~i~~~~~~-----~~~~~~LIv~P~-~l~~qw~~e~~~~ 108 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIA-VFSDAKKE-----NELTPSLVICPL-SVLKNWEEELSKF 108 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHH-HHHHHHHT-----TCCSSEEEEECS-TTHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHH-HHHHHHhc-----CCCCCEEEEccH-HHHHHHHHHHHHH
Confidence 469999999998873 578999999999999998654 44444432 234579999995 6899999999876
Q ss_pred HHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCcHHHH
Q 007402 123 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 202 (605)
Q Consensus 123 ~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~~~l 202 (605)
+. .+++..+.|+... .....++|+|+||+.+..... .....+++||+||||.+.+.+. ..
T Consensus 109 ~~------~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~-------l~~~~~~~vIvDEaH~~kn~~~--~~ 168 (500)
T 1z63_A 109 AP------HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR-------LKEVEWKYIVIDEAQNIKNPQT--KI 168 (500)
T ss_dssp CT------TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH-------HHTCCEEEEEEETGGGGSCTTS--HH
T ss_pred CC------CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch-------hcCCCcCEEEEeCccccCCHhH--HH
Confidence 42 4566666665421 122468999999998854332 2234689999999999987642 23
Q ss_pred HHHHhhCCCCceEEEEeeecCh-hHHHHHHH---h--------------------------------cCCCeEEEcCCcc
Q 007402 203 KALSAVIPRGCQCLLMSATSSS-DVDKLKKL---I--------------------------------LHNPYILTLPEVG 246 (605)
Q Consensus 203 ~~i~~~lp~~~q~il~SATl~~-~v~~l~~~---~--------------------------------l~~p~~i~l~~~~ 246 (605)
...+..++ ..+.+++|||+.. ...++..+ . +-.|.++......
T Consensus 169 ~~~l~~l~-~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~ 247 (500)
T 1z63_A 169 FKAVKELK-SKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYD 247 (500)
T ss_dssp HHHHHTSC-EEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTC
T ss_pred HHHHHhhc-cCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccc
Confidence 44445554 4678999999842 22222111 0 0134444321100
Q ss_pred CccccccCCCcEEEEEEcc--c-------------------------------------------------------cch
Q 007402 247 DVKDEVIPKNVQQFWISCS--E-------------------------------------------------------RDK 269 (605)
Q Consensus 247 ~~~~~~~~~~l~q~~~~~~--~-------------------------------------------------------~~k 269 (605)
.......+ ......+.++ + ..|
T Consensus 248 ~~~~~~lp-~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K 326 (500)
T 1z63_A 248 KAIINDLP-DKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGK 326 (500)
T ss_dssp HHHHTTSC-SEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHH
T ss_pred cchhhcCC-CCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchh
Confidence 00000111 1112222222 1 223
Q ss_pred HHHHHHHHHhhc-CCCeEEEEecchhHHHHHHHHHHHc-CCcEEEEcCCCCHHHHHHHHHHHHcC-CCc-EEEEcCCCCc
Q 007402 270 LLYILTLLKLEL-VQKKALIFTNTIDMAFRLKLFLEKF-GIKSAILNAELPQNSRLHILEEFNAG-LFD-YLIATDDTQT 345 (605)
Q Consensus 270 ~~~l~~llk~~~-~~~k~IIFv~s~~~~~~L~~~L~~~-gi~~~~l~~~l~~~~R~~i~~~F~~g-~~~-iLIaTd~~~~ 345 (605)
...+..++.... .+.++||||++.+.+..+...|... |+.+..+||+++..+|..++++|++| ... +|++|+.++
T Consensus 327 ~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~- 405 (500)
T 1z63_A 327 MIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGG- 405 (500)
T ss_dssp HHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC--
T ss_pred HHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeccccc-
Confidence 334444444332 3569999999999999999999885 99999999999999999999999998 555 788998876
Q ss_pred ccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCccE--EEEeCCc
Q 007402 346 KEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGAS--VSLVSPD 423 (605)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~a--i~~v~~~ 423 (605)
+|+|++.+++||+||+|+|+..|+||+||++|.|+.+.+ +.|+...
T Consensus 406 --------------------------------~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ 453 (500)
T 1z63_A 406 --------------------------------FGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 453 (500)
T ss_dssp --------------------------------CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETT
T ss_pred --------------------------------CCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCC
Confidence 799999999999999999999999999999999997766 4455443
No 71
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.97 E-value=5.3e-31 Score=309.04 Aligned_cols=332 Identities=15% Similarity=0.141 Sum_probs=222.1
Q ss_pred HHHHHHHHHCC-------CCCChHHHHHHHHHHhC--------------CCcEEEEcCCCchHHHHHHHHHHHHHhhcCC
Q 007402 35 LRLVHALNKKG-------IQKPTLIQQASIPLILE--------------GKDVVARAKTGSGKTFAYLLPLLHRLFNESS 93 (605)
Q Consensus 35 ~~l~~al~~~g-------~~~pt~iQ~~aIp~~l~--------------gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~ 93 (605)
++++.-+...- ...|+|+|..||+.+++ +++++++++||||||+++ +++++.+..
T Consensus 251 ~~ll~~l~~f~~~~~~~~~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~--- 326 (1038)
T 2w00_A 251 HTLLNVLVNYSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATE--- 326 (1038)
T ss_dssp HHHHHHHHHSEEECTTCCEEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTT---
T ss_pred HHHHHHHHhheeeccccccccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHh---
Confidence 45556665542 23599999999999886 378999999999999997 677754432
Q ss_pred CCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHH-cCCCcEEEECCchHHHHHhcCC
Q 007402 94 PKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL-AGPPDIVIATPGCMPKCLSTGV 172 (605)
Q Consensus 94 ~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l-~~~~dIvV~TP~~l~~~l~~~~ 172 (605)
.....++|||||+++|+.|+.+.+..+... .+.++.+...+...+ ...++|+|+||+++..++....
T Consensus 327 --~~~~~rvLvlvpr~eL~~Q~~~~f~~f~~~----------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~ 394 (1038)
T 2w00_A 327 --LDFIDKVFFVVDRKDLDYQTMKEYQRFSPD----------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAES 394 (1038)
T ss_dssp --CTTCCEEEEEECGGGCCHHHHHHHHTTSTT----------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCC
T ss_pred --cCCCceEEEEeCcHHHHHHHHHHHHHhccc----------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhccc
Confidence 123468999999999999999988876421 123444445555555 3579999999999999886542
Q ss_pred CCCcccCCCceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecChhHH-----HHHHHh--------------
Q 007402 173 LQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVD-----KLKKLI-------------- 233 (605)
Q Consensus 173 ~~~~~~l~~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~-----~l~~~~-------------- 233 (605)
....+....+||+||||++.. ......|...+|. .++++||||+..... .....|
T Consensus 395 --~~~~~~~~~lvIiDEAHrs~~---~~~~~~I~~~~p~-a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~ 468 (1038)
T 2w00_A 395 --DLPVYNQQVVFIFDECHRSQF---GEAQKNLKKKFKR-YYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIR 468 (1038)
T ss_dssp --CCGGGGSCEEEEEESCCTTHH---HHHHHHHHHHCSS-EEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHH
T ss_pred --chhccccccEEEEEccchhcc---hHHHHHHHHhCCc-ccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHh
Confidence 012345678999999999763 3456677788874 899999999974321 111111
Q ss_pred --cCCCeEEEcCCcc-Ccc------ccccCCCcEEEEEEccccchHHHH-HHHHHh---h-------cCCCeEEEEecch
Q 007402 234 --LHNPYILTLPEVG-DVK------DEVIPKNVQQFWISCSERDKLLYI-LTLLKL---E-------LVQKKALIFTNTI 293 (605)
Q Consensus 234 --l~~p~~i~l~~~~-~~~------~~~~~~~l~q~~~~~~~~~k~~~l-~~llk~---~-------~~~~k~IIFv~s~ 293 (605)
.--|..+...... ... .......+.+..+.. ..++...+ ..++.. . ....++||||+++
T Consensus 469 dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~~~i~~~~~l~-~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~ 547 (1038)
T 2w00_A 469 DEKVLKFKVDYNDVRPQFKSLETETDEKKLSAAENQQAFL-HPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSV 547 (1038)
T ss_dssp HTSSCCEEEEECCCCGGGHHHHTCCCHHHHHHTCSTTTTT-CHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSH
T ss_pred CCCcCCeEEEEEeccchhhhccccccHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCH
Confidence 1112222111100 000 000000000000001 11122222 222221 1 1235899999999
Q ss_pred hHHHHHHHHHHHcC------------CcEE-EEcCC----------C----------CH---------------------
Q 007402 294 DMAFRLKLFLEKFG------------IKSA-ILNAE----------L----------PQ--------------------- 319 (605)
Q Consensus 294 ~~~~~L~~~L~~~g------------i~~~-~l~~~----------l----------~~--------------------- 319 (605)
..|..++..|...+ ++++ ++|+. + ++
T Consensus 548 ~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~ 627 (1038)
T 2w00_A 548 DAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNF 627 (1038)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccc
Confidence 99999999998765 5564 45542 2 22
Q ss_pred --------HHHHHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEe
Q 007402 320 --------NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINF 391 (605)
Q Consensus 320 --------~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~f 391 (605)
+.|..++++|++|.++|||+||++. +|+|+|.+ +|+++
T Consensus 628 ~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~ll---------------------------------tGfDiP~l-~tlyl 673 (1038)
T 2w00_A 628 STDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFL---------------------------------TGFDAPTL-NTLFV 673 (1038)
T ss_dssp CSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTS---------------------------------SSCCCTTE-EEEEE
T ss_pred cccchhhhHHHHHHHHHHHcCCCeEEEEcchHH---------------------------------hCcCcccc-cEEEE
Confidence 1478899999999999999999976 89999999 78999
Q ss_pred CCCCCchhHHHhhcccccCCCC----ccEEEEeCCc
Q 007402 392 EMPQNAAGYVHRIGRTGRAYNT----GASVSLVSPD 423 (605)
Q Consensus 392 d~P~s~~~yiqRiGRtgR~g~~----G~ai~~v~~~ 423 (605)
|.|.+...|+||+||++|.+.. |.++.|+...
T Consensus 674 Dkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~~~ 709 (1038)
T 2w00_A 674 DKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRDLE 709 (1038)
T ss_dssp ESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSCCH
T ss_pred ccCCCccceeehhhccCcCCCCCCCcEEEEEccccH
Confidence 9999999999999999998764 7888888653
No 72
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.97 E-value=1.7e-28 Score=274.89 Aligned_cols=134 Identities=20% Similarity=0.206 Sum_probs=115.6
Q ss_pred CCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHH
Q 007402 44 KGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALI 123 (605)
Q Consensus 44 ~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~ 123 (605)
+|| .||++|..+||.+++|+ |+.|+||+|||++|++|++...+. +..++|++||++||.|.++++..++
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~--------G~qv~VvTPTreLA~Qdae~m~~l~ 144 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT--------GKGVHVVTVNDYLARRDAEWMGPVY 144 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT--------CSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh--------CCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 799 99999999999999998 999999999999999999766654 4569999999999999999999999
Q ss_pred HHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchH-HHHHhcCCCC--CcccCC---CceEEEEeCcchhc
Q 007402 124 ELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCM-PKCLSTGVLQ--SKSFSD---SLKILVLDEADLLL 194 (605)
Q Consensus 124 ~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l-~~~l~~~~~~--~~~~l~---~l~~lViDEad~i~ 194 (605)
.++ ++++..+.|+.+....... ..+||+|+||+++ .+++..+... ....+. .+.++||||||.|+
T Consensus 145 ~~l----GLsv~~i~Gg~~~~~r~~a--y~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 145 RGL----GLSVGVIQHASTPAERRKA--YLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp HTT----TCCEEECCTTCCHHHHHHH--HTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred Hhc----CCeEEEEeCCCCHHHHHHH--cCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 887 7899999999886544443 4689999999999 8999876421 124567 89999999999987
No 73
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.96 E-value=2.7e-27 Score=268.26 Aligned_cols=324 Identities=14% Similarity=0.172 Sum_probs=217.3
Q ss_pred CChHHHHHHHHHHh---------CCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHH
Q 007402 48 KPTLIQQASIPLIL---------EGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSE 118 (605)
Q Consensus 48 ~pt~iQ~~aIp~~l---------~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~ 118 (605)
.++|+|.+++..+. .++..|+..+||+|||+.++..+...+... ........++||+||+ .|+.||.++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~-~~~~p~~~~~LiV~P~-sll~qW~~E 132 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQS-PDCKPEIDKVIVVSPS-SLVRNWYNE 132 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCC-TTSSCSCSCEEEEECH-HHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhC-ccccCCCCcEEEEecH-HHHHHHHHH
Confidence 68999999999874 456799999999999998776665544332 1111234569999997 899999999
Q ss_pred HHHHHHHhcCCcceEEEEEeCCCCHHHH---HHHHc-----CCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCc
Q 007402 119 VMALIELCKGQVQLKVVQLTSSMPASDL---RAALA-----GPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEA 190 (605)
Q Consensus 119 ~~~l~~~~~~~~~i~v~~l~~~~~~~~~---~~~l~-----~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEa 190 (605)
+.+++.. .+.++.+.++...... ...+. ..++|+|+|++.+...... +....+++||+|||
T Consensus 133 ~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~------l~~~~~~~vI~DEa 201 (644)
T 1z3i_X 133 VGKWLGG-----RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEV------LHKGKVGLVICDEG 201 (644)
T ss_dssp HHHHHGG-----GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTT------TTTSCCCEEEETTG
T ss_pred HHHHcCC-----CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHHH------hhcCCccEEEEECc
Confidence 9887642 3556666666433221 12222 2478999999988765421 33356889999999
Q ss_pred chhccCCcHHHHHHHHhhCCCCceEEEEeeecChh-HHHH------------------HHHh------------------
Q 007402 191 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSD-VDKL------------------KKLI------------------ 233 (605)
Q Consensus 191 d~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~~~-v~~l------------------~~~~------------------ 233 (605)
|.+-+... .....+..++ ....+++|||+-.+ +.++ ...|
T Consensus 202 H~ikn~~~--~~~~al~~l~-~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~ 278 (644)
T 1z3i_X 202 HRLKNSDN--QTYLALNSMN-AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRA 278 (644)
T ss_dssp GGCCTTCH--HHHHHHHHHC-CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHH
T ss_pred eecCChhh--HHHHHHHhcc-cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHH
Confidence 99976542 2223333343 45679999997321 1100 0000
Q ss_pred -----------cCCCeEEEcCCccCccccccCCCcEEEEEEcc-------------------------------------
Q 007402 234 -----------LHNPYILTLPEVGDVKDEVIPKNVQQFWISCS------------------------------------- 265 (605)
Q Consensus 234 -----------l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~~------------------------------------- 265 (605)
+-.|.++.-.. ... ....+. .....+.|.
T Consensus 279 ~~~~~~~~L~~~l~~~~lRR~k-~~v-~~~LP~-k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~ 355 (644)
T 1z3i_X 279 AGEQKLQELISIVNRCLIRRTS-DIL-SKYLPV-KIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITS 355 (644)
T ss_dssp HHHHHHHHHHHHHHHHEECCCG-GGG-GGTSCC-EEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhH-HhH-hhhCCC-ceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHH
Confidence 00112221110 000 000111 111111111
Q ss_pred -----------------------------------------ccchHHHHHHHHHhh--cCCCeEEEEecchhHHHHHHHH
Q 007402 266 -----------------------------------------ERDKLLYILTLLKLE--LVQKKALIFTNTIDMAFRLKLF 302 (605)
Q Consensus 266 -----------------------------------------~~~k~~~l~~llk~~--~~~~k~IIFv~s~~~~~~L~~~ 302 (605)
...|+..+..++... ....++||||++...+..+..+
T Consensus 356 Lrk~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~ 435 (644)
T 1z3i_X 356 LKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKL 435 (644)
T ss_dssp HHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHH
Confidence 122333444444322 2367999999999999999999
Q ss_pred HHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCc---EEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccc
Q 007402 303 LEKFGIKSAILNAELPQNSRLHILEEFNAGLFD---YLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 379 (605)
Q Consensus 303 L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~---iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rG 379 (605)
|...|+.++.+||+++..+|..++++|++|... +||+|+.++ +|
T Consensus 436 l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g---------------------------------~G 482 (644)
T 1z3i_X 436 CRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGG---------------------------------CG 482 (644)
T ss_dssp HHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSC---------------------------------TT
T ss_pred HHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEeccccc---------------------------------CC
Confidence 999999999999999999999999999998754 889998866 69
Q ss_pred cccCCccEEEEeCCCCCchhHHHhhcccccCCCCccE--EEEeCCc
Q 007402 380 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGAS--VSLVSPD 423 (605)
Q Consensus 380 iD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~a--i~~v~~~ 423 (605)
||++++++||+||+|+|+..|.|++||++|.|+...+ +.|++..
T Consensus 483 lnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~ 528 (644)
T 1z3i_X 483 LNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTG 528 (644)
T ss_dssp CCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETT
T ss_pred cccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECC
Confidence 9999999999999999999999999999999987654 4455544
No 74
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3e-28 Score=282.75 Aligned_cols=319 Identities=18% Similarity=0.220 Sum_probs=222.1
Q ss_pred CChHHHHHHHHHHh----CCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHH
Q 007402 48 KPTLIQQASIPLIL----EGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALI 123 (605)
Q Consensus 48 ~pt~iQ~~aIp~~l----~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~ 123 (605)
.++|+|.+++..++ .+++.|+..+||+|||+..+..+...+... .....+||+|| ..|+.||.+++..++
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~-----~~~~~~LIV~P-~sll~qW~~E~~~~~ 309 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFAR-----RQNGPHIIVVP-LSTMPAWLDTFEKWA 309 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHH-----SCCSCEEEECC-TTTHHHHHHHHHHHS
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhc-----CCCCCEEEEEC-chHHHHHHHHHHHHC
Confidence 67899999998776 789999999999999998766655544332 22456899999 678899999988775
Q ss_pred HHhcCCcceEEEEEeCCCCHHHHHHH------------HcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcc
Q 007402 124 ELCKGQVQLKVVQLTSSMPASDLRAA------------LAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 191 (605)
Q Consensus 124 ~~~~~~~~i~v~~l~~~~~~~~~~~~------------l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad 191 (605)
. .+.+..+.|+......... ....++|+|+|++.+...... +....+++|||||||
T Consensus 310 p------~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~------l~~~~w~~vIvDEaH 377 (800)
T 3mwy_W 310 P------DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE------LGSIKWQFMAVDEAH 377 (800)
T ss_dssp T------TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH------HHTSEEEEEEETTGG
T ss_pred C------CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH------HhcCCcceeehhhhh
Confidence 2 5777777776544332221 224679999999998764331 222358899999999
Q ss_pred hhccCCcHHHHHHHHhhCCCCceEEEEeeecC-h---hHHHHHHHhcC-----------------------------CCe
Q 007402 192 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSS-S---DVDKLKKLILH-----------------------------NPY 238 (605)
Q Consensus 192 ~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~-~---~v~~l~~~~l~-----------------------------~p~ 238 (605)
++-+.+ ..+...+..++ ....+++|||+- + ++..+...... .|.
T Consensus 378 ~lkn~~--s~~~~~l~~l~-~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~ 454 (800)
T 3mwy_W 378 RLKNAE--SSLYESLNSFK-VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPF 454 (800)
T ss_dssp GGCCSS--SHHHHHHTTSE-EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGG
T ss_pred hhcCch--hHHHHHHHHhh-hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHH
Confidence 996543 23444455553 456788999972 1 12222221111 122
Q ss_pred EEEcCCccCccccccCCCcEEEEEEcc-----------------------------------------------------
Q 007402 239 ILTLPEVGDVKDEVIPKNVQQFWISCS----------------------------------------------------- 265 (605)
Q Consensus 239 ~i~l~~~~~~~~~~~~~~l~q~~~~~~----------------------------------------------------- 265 (605)
++...... .... .+ ......+.|.
T Consensus 455 ~lRR~k~d-v~~~-LP-~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~ 531 (800)
T 3mwy_W 455 ILRRLKKD-VEKS-LP-SKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEE 531 (800)
T ss_dssp EEECCGGG-GTTT-SC-CEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHH
T ss_pred HhhhhHHh-hhhc-cC-CcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHH
Confidence 32211100 0000 01 1111111111
Q ss_pred ----------------------ccchHHHHHHHHHhhc-CCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHH
Q 007402 266 ----------------------ERDKLLYILTLLKLEL-VQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 322 (605)
Q Consensus 266 ----------------------~~~k~~~l~~llk~~~-~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R 322 (605)
...|+..+..++.... .+.++||||+....+..|..+|...|+.++.+||.++...|
T Consensus 532 ~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR 611 (800)
T 3mwy_W 532 RVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQR 611 (800)
T ss_dssp HHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHH
T ss_pred HHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHH
Confidence 1224444555554332 35699999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCC---cEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchh
Q 007402 323 LHILEEFNAGLF---DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAG 399 (605)
Q Consensus 323 ~~i~~~F~~g~~---~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~ 399 (605)
..+++.|+.|.. .+|++|+.++ .|||++.+++||+||+|+|+..
T Consensus 612 ~~~i~~F~~~~~~~~v~LlSt~agg---------------------------------~GlNL~~a~~VI~~D~~wnp~~ 658 (800)
T 3mwy_W 612 RISIDHFNSPDSNDFVFLLSTRAGG---------------------------------LGINLMTADTVVIFDSDWNPQA 658 (800)
T ss_dssp HHHHHTTSSTTCSCCCEEEEHHHHT---------------------------------TTCCCTTCCEEEESSCCSCSHH
T ss_pred HHHHHHhhCCCCCceEEEEeccccc---------------------------------CCCCccccceEEEecCCCChhh
Confidence 999999999654 4899998865 6999999999999999999999
Q ss_pred HHHhhcccccCCCCccE--EEEeCCc
Q 007402 400 YVHRIGRTGRAYNTGAS--VSLVSPD 423 (605)
Q Consensus 400 yiqRiGRtgR~g~~G~a--i~~v~~~ 423 (605)
++||+||++|.|+...+ +.|++..
T Consensus 659 ~~Qa~gR~~RiGQ~k~V~Vyrlv~~~ 684 (800)
T 3mwy_W 659 DLQAMARAHRIGQKNHVMVYRLVSKD 684 (800)
T ss_dssp HHHHHTTTSCSSCCSCEEEEEEEETT
T ss_pred HHHHHHHHHhcCCCceEEEEEEecCC
Confidence 99999999999996655 4455554
No 75
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.96 E-value=1.4e-27 Score=270.86 Aligned_cols=133 Identities=20% Similarity=0.327 Sum_probs=115.2
Q ss_pred chHHHHHHHHHh-hcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCcc
Q 007402 268 DKLLYILTLLKL-ELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTK 346 (605)
Q Consensus 268 ~k~~~l~~llk~-~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~ 346 (605)
.+...++..+.. ...+.++||||+|...++.|..+|...|+.+..+||++++.+|..+++.|+.|.++|||||+.++
T Consensus 423 ~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~-- 500 (664)
T 1c4o_A 423 NQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLR-- 500 (664)
T ss_dssp THHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCC--
T ss_pred chHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhh--
Confidence 344444443433 23467999999999999999999999999999999999999999999999999999999999976
Q ss_pred cccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCC-----CCCchhHHHhhcccccCCCCccEEEEeC
Q 007402 347 EKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEM-----PQNAAGYVHRIGRTGRAYNTGASVSLVS 421 (605)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~-----P~s~~~yiqRiGRtgR~g~~G~ai~~v~ 421 (605)
+|+|+|+|++||++|. |.|..+|+||+|||||.+ .|.+++|++
T Consensus 501 -------------------------------~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~ 548 (664)
T 1c4o_A 501 -------------------------------EGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA-RGEVWLYAD 548 (664)
T ss_dssp -------------------------------TTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST-TCEEEEECS
T ss_pred -------------------------------cCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC-CCEEEEEEc
Confidence 8999999999999997 999999999999999995 899999999
Q ss_pred CchhhHHHHHHHH
Q 007402 422 PDEMKIFEEIKSF 434 (605)
Q Consensus 422 ~~e~~~~~~~~~~ 434 (605)
+.+......+++.
T Consensus 549 ~~~~~~~~~i~~~ 561 (664)
T 1c4o_A 549 RVSEAMQRAIEET 561 (664)
T ss_dssp SCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8877655555443
No 76
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.95 E-value=1.1e-26 Score=263.38 Aligned_cols=132 Identities=20% Similarity=0.326 Sum_probs=115.1
Q ss_pred chHHHHHHHHHhh-cCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCcc
Q 007402 268 DKLLYILTLLKLE-LVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTK 346 (605)
Q Consensus 268 ~k~~~l~~llk~~-~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~ 346 (605)
.+...++..+... ..+.++||||+|...++.|...|...|+.+..+||++++..|..+++.|+.|.++|||||+.++
T Consensus 429 ~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~-- 506 (661)
T 2d7d_A 429 GQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLR-- 506 (661)
T ss_dssp THHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCS--
T ss_pred chHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhh--
Confidence 3444444444433 3467999999999999999999999999999999999999999999999999999999999976
Q ss_pred cccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCC-----CCCchhHHHhhcccccCCCCccEEEEeC
Q 007402 347 EKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEM-----PQNAAGYVHRIGRTGRAYNTGASVSLVS 421 (605)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~-----P~s~~~yiqRiGRtgR~g~~G~ai~~v~ 421 (605)
+|+|+|+|++||++|. |.|..+|+||+|||||. ..|.+++|++
T Consensus 507 -------------------------------~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~ 554 (661)
T 2d7d_A 507 -------------------------------EGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-AEGRVIMYAD 554 (661)
T ss_dssp -------------------------------TTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS-TTCEEEEECS
T ss_pred -------------------------------CCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC-CCCEEEEEEe
Confidence 8999999999999997 99999999999999998 7899999999
Q ss_pred CchhhHHHHHHH
Q 007402 422 PDEMKIFEEIKS 433 (605)
Q Consensus 422 ~~e~~~~~~~~~ 433 (605)
+.+......+++
T Consensus 555 ~~~~~~~~~i~~ 566 (661)
T 2d7d_A 555 KITKSMEIAINE 566 (661)
T ss_dssp SCCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 987755554444
No 77
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.95 E-value=3.6e-27 Score=226.67 Aligned_cols=167 Identities=26% Similarity=0.409 Sum_probs=133.2
Q ss_pred HHhcCCCeEEEcCCccCccccccCCCcEEEEEEccccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcE
Q 007402 231 KLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 310 (605)
Q Consensus 231 ~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~~~~~~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~ 310 (605)
..++.+|..+.+.. ......++.|+++.++..+|...|..++... .+++||||+++..+..++..|...|+.+
T Consensus 9 ~~~~~~p~~i~v~~-----~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~g~~~ 81 (191)
T 2p6n_A 9 SGVDLGTENLYFQS-----MGAASLDVIQEVEYVKEEAKMVYLLECLQKT--PPPVLIFAEKKADVDAIHEYLLLKGVEA 81 (191)
T ss_dssp ------------------------CCSEEEEEECCGGGHHHHHHHHHTTS--CSCEEEECSCHHHHHHHHHHHHHHTCCE
T ss_pred ccccCCCEEEEECC-----CCCCCcCceEEEEEcChHHHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHHHHHHcCCcE
Confidence 34778898888765 3455678999999999999999999988753 5689999999999999999999999999
Q ss_pred EEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEE
Q 007402 311 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN 390 (605)
Q Consensus 311 ~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~ 390 (605)
..+||+|++.+|..+++.|++|.++|||||+.++ +|+|++++++||+
T Consensus 82 ~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~---------------------------------~Gldi~~v~~VI~ 128 (191)
T 2p6n_A 82 VAIHGGKDQEERTKAIEAFREGKKDVLVATDVAS---------------------------------KGLDFPAIQHVIN 128 (191)
T ss_dssp EEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHH---------------------------------TTCCCCCCSEEEE
T ss_pred EEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchh---------------------------------cCCCcccCCEEEE
Confidence 9999999999999999999999999999999865 8999999999999
Q ss_pred eCCCCCchhHHHhhcccccCCCCccEEEEeCCc-hhhHHHHHHHHHhh
Q 007402 391 FEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPD-EMKIFEEIKSFVGD 437 (605)
Q Consensus 391 fd~P~s~~~yiqRiGRtgR~g~~G~ai~~v~~~-e~~~~~~~~~~l~~ 437 (605)
||+|+++..|+||+||+||.|+.|.+++|+++. +...+..+++.+..
T Consensus 129 ~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~~l~~~l~~ 176 (191)
T 2p6n_A 129 YDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVLMDLKALLLE 176 (191)
T ss_dssp SSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999986 55566666666544
No 78
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.94 E-value=1.7e-26 Score=216.09 Aligned_cols=151 Identities=32% Similarity=0.585 Sum_probs=139.4
Q ss_pred ccCCCcEEEEEEccccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHc
Q 007402 252 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 331 (605)
Q Consensus 252 ~~~~~l~q~~~~~~~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~ 331 (605)
....++.|+++.++..+|+..|..+++.. ..+++||||+++..+..++..|...|+.+..+||+|++.+|..+++.|++
T Consensus 5 ~~~~~i~~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~ 83 (163)
T 2hjv_A 5 LTTRNIEHAVIQVREENKFSLLKDVLMTE-NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKR 83 (163)
T ss_dssp -CCCCEEEEEEECCGGGHHHHHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred cCcccceEEEEECChHHHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 34567999999999999999999998864 46799999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCC
Q 007402 332 GLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAY 411 (605)
Q Consensus 332 g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g 411 (605)
|.++|||||+.++ +|+|+|++++||+||+|+++..|+||+||+||.|
T Consensus 84 g~~~vlv~T~~~~---------------------------------~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g 130 (163)
T 2hjv_A 84 GEYRYLVATDVAA---------------------------------RGIDIENISLVINYDLPLEKESYVHRTGRTGRAG 130 (163)
T ss_dssp TSCSEEEECGGGT---------------------------------TTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTT
T ss_pred CCCeEEEECChhh---------------------------------cCCchhcCCEEEEeCCCCCHHHHHHhccccCcCC
Confidence 9999999999866 8999999999999999999999999999999999
Q ss_pred CCccEEEEeCCchhhHHHHHHHHHh
Q 007402 412 NTGASVSLVSPDEMKIFEEIKSFVG 436 (605)
Q Consensus 412 ~~G~ai~~v~~~e~~~~~~~~~~l~ 436 (605)
+.|.+++|+++.+...+..+++.+.
T Consensus 131 ~~g~~~~~~~~~~~~~~~~i~~~~~ 155 (163)
T 2hjv_A 131 NKGKAISFVTAFEKRFLADIEEYIG 155 (163)
T ss_dssp CCEEEEEEECGGGHHHHHHHHHHHT
T ss_pred CCceEEEEecHHHHHHHHHHHHHHC
Confidence 9999999999998877777766553
No 79
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.94 E-value=4.3e-26 Score=215.40 Aligned_cols=148 Identities=24% Similarity=0.464 Sum_probs=133.5
Q ss_pred CCCcEEEEEEccccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCC
Q 007402 254 PKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGL 333 (605)
Q Consensus 254 ~~~l~q~~~~~~~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~ 333 (605)
..++.|+|+.++..+|...|..+++.. ..+++||||+++..+..++..|...|+.+..+||+|++.+|..+++.|++|.
T Consensus 3 ~~~i~q~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~ 81 (172)
T 1t5i_A 3 LHGLQQYYVKLKDNEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ 81 (172)
T ss_dssp --CCEEEEEECCGGGHHHHHHHHHHHS-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred cCCeEEEEEECChHHHHHHHHHHHHhC-CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCC
Confidence 357999999999999999999999854 4679999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCC
Q 007402 334 FDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNT 413 (605)
Q Consensus 334 ~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~ 413 (605)
++|||||+.++ +|+|++++++||+||+|+|+..|+||+||+||.|+.
T Consensus 82 ~~vLvaT~~~~---------------------------------~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~ 128 (172)
T 1t5i_A 82 RRILVATNLFG---------------------------------RGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTK 128 (172)
T ss_dssp CSEEEESSCCS---------------------------------TTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCC
T ss_pred CcEEEECCchh---------------------------------cCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCC
Confidence 99999999976 899999999999999999999999999999999999
Q ss_pred ccEEEEeCCch-hhHHHHHHHHH
Q 007402 414 GASVSLVSPDE-MKIFEEIKSFV 435 (605)
Q Consensus 414 G~ai~~v~~~e-~~~~~~~~~~l 435 (605)
|.+++|+++.+ ...+..+++.+
T Consensus 129 g~~~~~~~~~~~~~~~~~l~~~~ 151 (172)
T 1t5i_A 129 GLAITFVSDENDAKILNDVQDRF 151 (172)
T ss_dssp CEEEEEECSHHHHHHHHHHHHHH
T ss_pred cEEEEEEcChhHHHHHHHHHHHH
Confidence 99999999863 34444444433
No 80
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.94 E-value=3.6e-26 Score=218.55 Aligned_cols=153 Identities=31% Similarity=0.465 Sum_probs=129.0
Q ss_pred ccCCCcEEEEEEccccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHc
Q 007402 252 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 331 (605)
Q Consensus 252 ~~~~~l~q~~~~~~~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~ 331 (605)
....++.|+++.++..+|...|..+++.....+++||||+++..+..++..|...|+.+..+||+|++.+|..+++.|+.
T Consensus 15 ~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~ 94 (185)
T 2jgn_A 15 STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS 94 (185)
T ss_dssp -CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHH
T ss_pred CCCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 45668999999999999999999999876567899999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCC
Q 007402 332 GLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAY 411 (605)
Q Consensus 332 g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g 411 (605)
|.++|||||+.++ +|+|+|++++||+||+|+++.+|+||+||+||.|
T Consensus 95 g~~~vLvaT~~~~---------------------------------~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g 141 (185)
T 2jgn_A 95 GKSPILVATAVAA---------------------------------RGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVG 141 (185)
T ss_dssp TSSSEEEEEC---------------------------------------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTT
T ss_pred CCCeEEEEcChhh---------------------------------cCCCcccCCEEEEeCCCCCHHHHHHHccccCCCC
Confidence 9999999999976 8999999999999999999999999999999999
Q ss_pred CCccEEEEeCCchhhHHHHHHHHHhh
Q 007402 412 NTGASVSLVSPDEMKIFEEIKSFVGD 437 (605)
Q Consensus 412 ~~G~ai~~v~~~e~~~~~~~~~~l~~ 437 (605)
+.|.+++|+++.+...+..+++.+..
T Consensus 142 ~~g~~~~~~~~~~~~~~~~l~~~l~~ 167 (185)
T 2jgn_A 142 NLGLATSFFNERNINITKDLLDLLVE 167 (185)
T ss_dssp SCEEEEEEECGGGGGGHHHHHHHHHH
T ss_pred CCcEEEEEEchhhHHHHHHHHHHHHh
Confidence 99999999999998888777777654
No 81
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.94 E-value=5.9e-26 Score=215.00 Aligned_cols=150 Identities=30% Similarity=0.494 Sum_probs=133.4
Q ss_pred cCCCcEEEEEEccccc-hHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHc
Q 007402 253 IPKNVQQFWISCSERD-KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 331 (605)
Q Consensus 253 ~~~~l~q~~~~~~~~~-k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~ 331 (605)
...++.|+|+.++..+ |...|..+++.. ..+++||||+++..+..++..|...|+.+..+||+|++.+|..+++.|++
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~ 82 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSI-TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRD 82 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTS-CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHT
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 4568999999998765 999999988754 46799999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCC------CCchhHHHhhc
Q 007402 332 GLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP------QNAAGYVHRIG 405 (605)
Q Consensus 332 g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P------~s~~~yiqRiG 405 (605)
|.++|||||+.++ +|+|+|++++||+||+| .++.+|+||+|
T Consensus 83 g~~~vLvaT~~~~---------------------------------~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~G 129 (175)
T 2rb4_A 83 GKEKVLITTNVCA---------------------------------RGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIG 129 (175)
T ss_dssp TSCSEEEECCSCC---------------------------------TTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHC
T ss_pred CCCeEEEEecchh---------------------------------cCCCcccCCEEEEeCCCCCccccCCHHHHHHHhc
Confidence 9999999999976 89999999999999999 89999999999
Q ss_pred ccccCCCCccEEEEeCCchhhHHHHHHHHHh
Q 007402 406 RTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 436 (605)
Q Consensus 406 RtgR~g~~G~ai~~v~~~e~~~~~~~~~~l~ 436 (605)
|+||.|+.|.+++|+.+.+...+..+++.+.
T Consensus 130 R~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~ 160 (175)
T 2rb4_A 130 RTGRFGKKGLAFNMIEVDELPSLMKIQDHFN 160 (175)
T ss_dssp BC----CCEEEEEEECGGGHHHHHHHHHHHT
T ss_pred ccccCCCCceEEEEEccchHHHHHHHHHHhc
Confidence 9999999999999999988766666666554
No 82
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.94 E-value=9.2e-26 Score=211.55 Aligned_cols=148 Identities=31% Similarity=0.527 Sum_probs=130.5
Q ss_pred CCcEEEEEEccccc-hHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCC
Q 007402 255 KNVQQFWISCSERD-KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGL 333 (605)
Q Consensus 255 ~~l~q~~~~~~~~~-k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~ 333 (605)
.++.|+|+.++..+ |...+..+++.. ..+++||||++++.+..++..|...|+.+..+||+|++.+|..+++.|+.|.
T Consensus 2 ~~i~~~~~~~~~~~~K~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 80 (165)
T 1fuk_A 2 EGIKQFYVNVEEEEYKYECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGS 80 (165)
T ss_dssp --CEEEEEEEESGGGHHHHHHHHHHHT-TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred CCcEEEEEECCcchhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 36899999999877 999999988864 4689999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCC
Q 007402 334 FDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNT 413 (605)
Q Consensus 334 ~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~ 413 (605)
++|||||+.++ +|+|+|++++||+||+|+++..|+||+||+||.|+.
T Consensus 81 ~~vlv~T~~~~---------------------------------~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~ 127 (165)
T 1fuk_A 81 SRILISTDLLA---------------------------------RGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRK 127 (165)
T ss_dssp CSEEEEEGGGT---------------------------------TTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----
T ss_pred CEEEEEcChhh---------------------------------cCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCC
Confidence 99999999966 899999999999999999999999999999999999
Q ss_pred ccEEEEeCCchhhHHHHHHHHHh
Q 007402 414 GASVSLVSPDEMKIFEEIKSFVG 436 (605)
Q Consensus 414 G~ai~~v~~~e~~~~~~~~~~l~ 436 (605)
|.+++|+++.+...+..+++.+.
T Consensus 128 g~~~~~~~~~~~~~~~~~~~~~~ 150 (165)
T 1fuk_A 128 GVAINFVTNEDVGAMRELEKFYS 150 (165)
T ss_dssp CEEEEEEETTTHHHHHHHHHHSS
T ss_pred ceEEEEEcchHHHHHHHHHHHHc
Confidence 99999999988877666666554
No 83
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.93 E-value=5e-25 Score=215.29 Aligned_cols=148 Identities=30% Similarity=0.458 Sum_probs=134.5
Q ss_pred CcEEEEEEccccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCc
Q 007402 256 NVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFD 335 (605)
Q Consensus 256 ~l~q~~~~~~~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~ 335 (605)
.+.+.++.+...+|+..+..+++... .+++||||+++..+..++..|...|+.+..+||+|++..|..+++.|++|.++
T Consensus 5 ~~~~~~~~~~~~~k~~~l~~ll~~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~ 83 (212)
T 3eaq_A 5 TYEEEAVPAPVRGRLEVLSDLLYVAS-PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVR 83 (212)
T ss_dssp CBCCEEEECCTTSHHHHHHHHHHHHC-CSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCC
T ss_pred ceeeeEEeCCHHHHHHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCe
Confidence 45677888999999999999998654 78999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCcc
Q 007402 336 YLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGA 415 (605)
Q Consensus 336 iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ 415 (605)
|||||++++ +|||++++++|||||+|+++.+|+||+|||||.|+.|.
T Consensus 84 vlvaT~~~~---------------------------------~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~ 130 (212)
T 3eaq_A 84 VLVATDVAA---------------------------------RGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGR 130 (212)
T ss_dssp EEEECTTTT---------------------------------CSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BE
T ss_pred EEEecChhh---------------------------------cCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCe
Confidence 999999977 89999999999999999999999999999999999999
Q ss_pred EEEEeCCchhhHHHHHHHHHhh
Q 007402 416 SVSLVSPDEMKIFEEIKSFVGD 437 (605)
Q Consensus 416 ai~~v~~~e~~~~~~~~~~l~~ 437 (605)
+++|+++.+...+..+++.+..
T Consensus 131 ~~~l~~~~~~~~~~~i~~~~~~ 152 (212)
T 3eaq_A 131 VVLLYGPRERRDVEALERAVGR 152 (212)
T ss_dssp EEEEECGGGHHHHHHHHHHHSS
T ss_pred EEEEEchhHHHHHHHHHHHhcC
Confidence 9999999888777666665543
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.92 E-value=1.3e-24 Score=222.85 Aligned_cols=148 Identities=30% Similarity=0.456 Sum_probs=133.7
Q ss_pred CcEEEEEEccccchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCc
Q 007402 256 NVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFD 335 (605)
Q Consensus 256 ~l~q~~~~~~~~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~ 335 (605)
.+.|+++.+...+|+..+..+++... .+++||||+++..+..++..|...|+.+..+||+|++..|..+++.|+.|.++
T Consensus 2 ~v~~~~i~~~~~~K~~~L~~ll~~~~-~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~ 80 (300)
T 3i32_A 2 TYEEEAVPAPVRGRLEVLSDLLYVAS-PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVR 80 (300)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHC-CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCC
T ss_pred ceEEEEEECCHHHHHHHHHHHHHhcC-CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCce
Confidence 47899999999999999999998765 78999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCcc
Q 007402 336 YLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGA 415 (605)
Q Consensus 336 iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~ 415 (605)
|||||++++ ||||+++|++|||||+|++..+|+||+|||||+|+.|.
T Consensus 81 vLVaT~va~---------------------------------~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~ 127 (300)
T 3i32_A 81 VLVATDVAA---------------------------------RGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGR 127 (300)
T ss_dssp EEEECSTTT---------------------------------CSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CE
T ss_pred EEEEechhh---------------------------------cCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCce
Confidence 999999987 89999999999999999999999999999999999999
Q ss_pred EEEEeCCchhhHHHHHHHHHhh
Q 007402 416 SVSLVSPDEMKIFEEIKSFVGD 437 (605)
Q Consensus 416 ai~~v~~~e~~~~~~~~~~l~~ 437 (605)
|++|+++.+...+..+++.+..
T Consensus 128 ~i~l~~~~e~~~~~~ie~~~~~ 149 (300)
T 3i32_A 128 VVLLYGPRERRDVEALERAVGR 149 (300)
T ss_dssp EEEEECSSTHHHHHHHHHHHTC
T ss_pred EEEEeChHHHHHHHHHHHHhCC
Confidence 9999999988777777666544
No 85
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.84 E-value=9e-26 Score=212.73 Aligned_cols=147 Identities=29% Similarity=0.560 Sum_probs=133.8
Q ss_pred CCcEEEEEEccc-cchHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCC
Q 007402 255 KNVQQFWISCSE-RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGL 333 (605)
Q Consensus 255 ~~l~q~~~~~~~-~~k~~~l~~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~ 333 (605)
.++.|+++.++. .+|...|..+++.. ..+++||||+++..+..++..|...|+.+..+||+|++.+|..+++.|++|.
T Consensus 2 ~~i~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~ 80 (170)
T 2yjt_D 2 KKIHQWYYRADDLEHKTALLVHLLKQP-EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR 80 (170)
Confidence 367888999987 88999998888753 3679999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEcCCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCC
Q 007402 334 FDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNT 413 (605)
Q Consensus 334 ~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~ 413 (605)
++|||||+.++ +|+|++++++||+||+|+++..|+||+||+||.|+.
T Consensus 81 ~~vLvaT~~~~---------------------------------~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~ 127 (170)
T 2yjt_D 81 VNVLVATDVAA---------------------------------RGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRK 127 (170)
Confidence 99999999976 899999999999999999999999999999999999
Q ss_pred ccEEEEeCCchhhHHHHHHHHH
Q 007402 414 GASVSLVSPDEMKIFEEIKSFV 435 (605)
Q Consensus 414 G~ai~~v~~~e~~~~~~~~~~l 435 (605)
|.+++|+.+.+...+..+++.+
T Consensus 128 g~~~~~~~~~~~~~~~~~~~~~ 149 (170)
T 2yjt_D 128 GTAISLVEAHDHLLLGKVGRYI 149 (170)
Confidence 9999999998776665555544
No 86
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.89 E-value=1.1e-23 Score=204.92 Aligned_cols=171 Identities=18% Similarity=0.124 Sum_probs=118.6
Q ss_pred CCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHH-HHHHHHHH
Q 007402 44 KGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQ-VYSEVMAL 122 (605)
Q Consensus 44 ~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Q-v~~~~~~l 122 (605)
.+...|+++|.++++.+++++++++.+|||+|||++|++++++.+..... ...+.++||+|||++|+.| +.+.+..+
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~--~~~~~~~lil~p~~~L~~q~~~~~~~~~ 106 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKK--ASEPGKVIVLVNKVLLVEQLFRKEFQPF 106 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHH--TTCCCCEEEEESSHHHHHHHHHHTHHHH
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhccc--ccCCCcEEEEECHHHHHHHHHHHHHHHH
Confidence 45568999999999999999999999999999999999999987664321 1235689999999999999 77777776
Q ss_pred HHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCC--cccCCCceEEEEeCcchhccCCcHH
Q 007402 123 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQS--KSFSDSLKILVLDEADLLLSYGYED 200 (605)
Q Consensus 123 ~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~--~~~l~~l~~lViDEad~i~~~g~~~ 200 (605)
... .+.+..+.|+.........+...++|+|+||+++..++....... ...+.++++|||||||++.+.++..
T Consensus 107 ~~~-----~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~ 181 (216)
T 3b6e_A 107 LKK-----WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYN 181 (216)
T ss_dssp HTT-----TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHH
T ss_pred hcc-----CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHH
Confidence 532 467777777654322222233468999999999999888653100 1446788999999999998776555
Q ss_pred HH-HHHHhhC-------------CCCceEEEEeee
Q 007402 201 DL-KALSAVI-------------PRGCQCLLMSAT 221 (605)
Q Consensus 201 ~l-~~i~~~l-------------p~~~q~il~SAT 221 (605)
.+ ..++... .+..++++||||
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 182 NIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 44 3332221 156899999998
No 87
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.87 E-value=2e-21 Score=215.72 Aligned_cols=131 Identities=19% Similarity=0.161 Sum_probs=86.8
Q ss_pred CCCCCChHHHHHHHH----HHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHH
Q 007402 44 KGIQKPTLIQQASIP----LILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEV 119 (605)
Q Consensus 44 ~g~~~pt~iQ~~aIp----~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~ 119 (605)
.|| .|+|+|.+++. .+..|+++++.||||+|||++|++|+++. +.+++|++||++|+.|+.+.+
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~-----------~~~~~~~~~t~~l~~q~~~~~ 71 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL-----------KKKVLIFTRTHSQLDSIYKNA 71 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH-----------TCEEEEEESCHHHHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC-----------CCcEEEEcCCHHHHHHHHHHH
Confidence 477 89999999865 45688999999999999999999998763 467999999999999999887
Q ss_pred HHHHHHhcCCcceEEEEEeCCCCH---------------------------------HHH--------------HHHHcC
Q 007402 120 MALIELCKGQVQLKVVQLTSSMPA---------------------------------SDL--------------RAALAG 152 (605)
Q Consensus 120 ~~l~~~~~~~~~i~v~~l~~~~~~---------------------------------~~~--------------~~~l~~ 152 (605)
..+ .+++..+.|.... ..+ ......
T Consensus 72 ~~l--------~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~ 143 (540)
T 2vl7_A 72 KLL--------GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLK 143 (540)
T ss_dssp GGG--------TCCEEEC---------------------------------------------------------CTTGG
T ss_pred Hhc--------CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhh
Confidence 763 2333333322100 000 001124
Q ss_pred CCcEEEECCchHHHHHhcCCCC---CcccCCCceEEEEeCcchhc
Q 007402 153 PPDIVIATPGCMPKCLSTGVLQ---SKSFSDSLKILVLDEADLLL 194 (605)
Q Consensus 153 ~~dIvV~TP~~l~~~l~~~~~~---~~~~l~~l~~lViDEad~i~ 194 (605)
..||||+|+..+.+....+.+. ....+....++||||||.+.
T Consensus 144 ~adiVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 144 DKDVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp GCSEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred cCCEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 5799999999998755432210 00123567899999999884
No 88
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.86 E-value=4.2e-22 Score=197.60 Aligned_cols=186 Identities=17% Similarity=0.158 Sum_probs=135.1
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHH
Q 007402 33 LDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELC 112 (605)
Q Consensus 33 L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa 112 (605)
.++.+.+.+...+...++++|.++++.+..|+++++.|+||||||.++.+++++.+..... ....++++++|+++|+
T Consensus 46 ~~~~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~---~~~~~~l~~~p~~~la 122 (235)
T 3llm_A 46 QDHDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR---AAECNIVVTQPRRISA 122 (235)
T ss_dssp HCHHHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC---GGGCEEEEEESSHHHH
T ss_pred cCHHHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC---CCceEEEEeccchHHH
Confidence 3444444444444456799999999999999999999999999999999999988776422 2356899999999999
Q ss_pred HHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcch
Q 007402 113 QQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADL 192 (605)
Q Consensus 113 ~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~ 192 (605)
.|+++.+..... ......+..-.... .......++|+|+||+++.+++.. .++++++|||||||.
T Consensus 123 ~q~~~~~~~~~~---~~~~~~~g~~~~~~-----~~~~~~~~~Ivv~Tpg~l~~~l~~-------~l~~~~~lVlDEah~ 187 (235)
T 3llm_A 123 VSVAERVAFERG---EEPGKSCGYSVRFE-----SILPRPHASIMFCTVGVLLRKLEA-------GIRGISHVIVDEIHE 187 (235)
T ss_dssp HHHHHHHHHTTT---CCTTSSEEEEETTE-----EECCCSSSEEEEEEHHHHHHHHHH-------CCTTCCEEEECCTTS
T ss_pred HHHHHHHHHHhc---cccCceEEEeechh-----hccCCCCCeEEEECHHHHHHHHHh-------hhcCCcEEEEECCcc
Confidence 999888765432 11122222111110 000114578999999999999875 267899999999998
Q ss_pred h-ccCCcH-HHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhcCCCeE
Q 007402 193 L-LSYGYE-DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYI 239 (605)
Q Consensus 193 i-~~~g~~-~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~ 239 (605)
+ ++.+|. ..+..+....+ ..|+++||||++.+. +...+...|++
T Consensus 188 ~~~~~~~~~~~l~~i~~~~~-~~~~il~SAT~~~~~--~~~~~~~~pvi 233 (235)
T 3llm_A 188 RDINTDFLLVVLRDVVQAYP-EVRIVLMSATIDTSM--FCEYFFNCPII 233 (235)
T ss_dssp CCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCCHH--HHHHTTSCCCE
T ss_pred CCcchHHHHHHHHHHHhhCC-CCeEEEEecCCCHHH--HHHHcCCCCEE
Confidence 5 666666 56777777765 699999999999876 66666665553
No 89
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.85 E-value=8.1e-22 Score=200.87 Aligned_cols=161 Identities=14% Similarity=0.161 Sum_probs=125.2
Q ss_pred CCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHHh
Q 007402 47 QKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELC 126 (605)
Q Consensus 47 ~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~ 126 (605)
-.|+++|.++++.++++++.++++|||+|||.+++.++...+... ..++||++||++|+.|+++.+..+....
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~-------~~~~lil~Pt~~L~~q~~~~l~~~~~~~ 184 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY-------EGKILIIVPTTALTTQMADDFVDYRLFS 184 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHC-------SSEEEEECSSHHHHHHHHHHHHHHTSCC
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcC-------CCeEEEEECCHHHHHHHHHHHHHhcccc
Confidence 389999999999999999999999999999999988887766441 3479999999999999999998774321
Q ss_pred cCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCcHHHHHHHH
Q 007402 127 KGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206 (605)
Q Consensus 127 ~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~~~l~~i~ 206 (605)
...+..+.++..... ......+|+|+||+.+... . ...+.++++|||||||++.+ ..+..++
T Consensus 185 ----~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~----~~~~~~~~~vIiDEaH~~~~----~~~~~il 246 (282)
T 1rif_A 185 ----HAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQ---P----KEWFSQFGMMMNDECHLATG----KSISSII 246 (282)
T ss_dssp ----GGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTS---C----GGGGGGEEEEEEETGGGCCH----HHHHHHT
T ss_pred ----cceEEEEeCCCcchh---hhccCCcEEEEchHHHHhh---H----HHHHhhCCEEEEECCccCCc----ccHHHHH
Confidence 345666666654321 2235689999999876432 1 14567889999999999873 4778888
Q ss_pred hhCCCCceEEEEeeecChhHHHHHHH
Q 007402 207 AVIPRGCQCLLMSATSSSDVDKLKKL 232 (605)
Q Consensus 207 ~~lp~~~q~il~SATl~~~v~~l~~~ 232 (605)
..++...+++++|||+++....+..+
T Consensus 247 ~~~~~~~~~l~lSATp~~~~~~~~~l 272 (282)
T 1rif_A 247 SGLNNCMFKFGLSGSLRDGKANIMQY 272 (282)
T ss_dssp TTCTTCCEEEEECSSCCTTSTTHHHH
T ss_pred HHhhcCCeEEEEeCCCCCcchHHHHH
Confidence 88878899999999998765444443
No 90
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.83 E-value=8.2e-19 Score=195.31 Aligned_cols=132 Identities=21% Similarity=0.127 Sum_probs=98.7
Q ss_pred CCCCChHHHHHHHHH----HhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHH
Q 007402 45 GIQKPTLIQQASIPL----ILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVM 120 (605)
Q Consensus 45 g~~~pt~iQ~~aIp~----~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~ 120 (605)
|| .|+|+|.+++.. +..|+|+++.||||+|||++|++|++.. +.++||++||++|+.|+.+.+.
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~-----------~~~v~i~~pt~~l~~q~~~~~~ 68 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV-----------KPKVLFVVRTHNEFYPIYRDLT 68 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH-----------CSEEEEEESSGGGHHHHHHHHT
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC-----------CCeEEEEcCCHHHHHHHHHHHH
Confidence 45 699999997764 4578999999999999999999999982 5689999999999999998887
Q ss_pred HHHHHhcCCcceEEEEEeCCCC---------------------------------HHHHH------------------HH
Q 007402 121 ALIELCKGQVQLKVVQLTSSMP---------------------------------ASDLR------------------AA 149 (605)
Q Consensus 121 ~l~~~~~~~~~i~v~~l~~~~~---------------------------------~~~~~------------------~~ 149 (605)
.+.... .+++..+.|..+ ...+. ..
T Consensus 69 ~l~~~~----~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~ 144 (551)
T 3crv_A 69 KIREKR----NITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLN 144 (551)
T ss_dssp TCCCSS----CCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHhhhc----CccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHh
Confidence 764332 456666655211 11111 22
Q ss_pred HcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhcc
Q 007402 150 LAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLS 195 (605)
Q Consensus 150 l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~ 195 (605)
....+||||+|++.|++......+ .......++||||||.+.+
T Consensus 145 ~~~~adIVV~~~~~l~~~~~~~~~---~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 145 SLYKADVIALTYPYFFIDRYREFI---DIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp HGGGCSEEEEETHHHHCHHHHTTS---CCCSTTEEEEETTGGGGGG
T ss_pred hhhcCCEEEeCchHhcCHHHHHhc---CCCcCCeEEEEecccchHH
Confidence 345789999999999988655431 1224677999999998765
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.78 E-value=1e-18 Score=173.43 Aligned_cols=138 Identities=18% Similarity=0.177 Sum_probs=110.5
Q ss_pred CChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHHhc
Q 007402 48 KPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCK 127 (605)
Q Consensus 48 ~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~ 127 (605)
.|+++|.++++.+++++++++++|||+|||.+++.++... +.++||++|+++|+.|+.+.+..+
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-----------~~~~liv~P~~~L~~q~~~~~~~~----- 156 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGIF----- 156 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS-----------CSCEEEEESSHHHHHHHHHHHGGG-----
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc-----------CCCEEEEeCCHHHHHHHHHHHHhC-----
Confidence 7899999999999999999999999999999998877652 356999999999999999998873
Q ss_pred CCcceE-EEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCcHHHHHHHH
Q 007402 128 GQVQLK-VVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206 (605)
Q Consensus 128 ~~~~i~-v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~~~l~~i~ 206 (605)
++. +..+.|+.. ...+|+|+||+.+...... ....+++|||||||.+.+..|. .++
T Consensus 157 ---~~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~-------~~~~~~llIiDEaH~l~~~~~~----~i~ 213 (237)
T 2fz4_A 157 ---GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK-------LGNRFMLLIFDEVHHLPAESYV----QIA 213 (237)
T ss_dssp ---CGGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHH-------HTTTCSEEEEECSSCCCTTTHH----HHH
T ss_pred ---CCCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHH-------hcccCCEEEEECCccCCChHHH----HHH
Confidence 455 666777653 3679999999988765542 2245899999999999877654 455
Q ss_pred hhCCCCceEEEEeeecChh
Q 007402 207 AVIPRGCQCLLMSATSSSD 225 (605)
Q Consensus 207 ~~lp~~~q~il~SATl~~~ 225 (605)
..++ ..+++++|||+...
T Consensus 214 ~~~~-~~~~l~LSATp~r~ 231 (237)
T 2fz4_A 214 QMSI-APFRLGLTATFERE 231 (237)
T ss_dssp HTCC-CSEEEEEEESCC--
T ss_pred Hhcc-CCEEEEEecCCCCC
Confidence 5555 57889999998753
No 92
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.71 E-value=4.3e-17 Score=164.82 Aligned_cols=126 Identities=22% Similarity=0.295 Sum_probs=97.2
Q ss_pred cccchHHHHHHHHHhhc-CCCeEEEEecchhHHHHHHHHHHH-cCCcEEEEcCCCCHHHHHHHHHHHHcC-CCc-EEEEc
Q 007402 265 SERDKLLYILTLLKLEL-VQKKALIFTNTIDMAFRLKLFLEK-FGIKSAILNAELPQNSRLHILEEFNAG-LFD-YLIAT 340 (605)
Q Consensus 265 ~~~~k~~~l~~llk~~~-~~~k~IIFv~s~~~~~~L~~~L~~-~gi~~~~l~~~l~~~~R~~i~~~F~~g-~~~-iLIaT 340 (605)
....|+..+..++.... ...++||||++...+..+..+|.. +|+.++.+||+++..+|..+++.|++| .+. +|++|
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st 172 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 172 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeh
Confidence 45678888888877542 467999999999999999999988 599999999999999999999999999 777 78899
Q ss_pred CCCCcccccccCCCCCcccccccCCCCCccccccccccccccCCccEEEEeCCCCCchhHHHhhcccccCCCCccE--EE
Q 007402 341 DDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGAS--VS 418 (605)
Q Consensus 341 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD~~~v~~VI~fd~P~s~~~yiqRiGRtgR~g~~G~a--i~ 418 (605)
+.++ +|+|++.+++||+||+||++..|+||+||++|.|+.+.+ +.
T Consensus 173 ~~~g---------------------------------~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~ 219 (271)
T 1z5z_A 173 KAGG---------------------------------FGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHK 219 (271)
T ss_dssp CTTC---------------------------------CCCCCTTCSEEEECSCCSCTTTC--------------CCEEEE
T ss_pred hhhc---------------------------------CCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEE
Confidence 8866 799999999999999999999999999999999998765 45
Q ss_pred EeCCc
Q 007402 419 LVSPD 423 (605)
Q Consensus 419 ~v~~~ 423 (605)
|++..
T Consensus 220 li~~~ 224 (271)
T 1z5z_A 220 LISVG 224 (271)
T ss_dssp EEETT
T ss_pred EeeCC
Confidence 55543
No 93
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.69 E-value=3.1e-16 Score=176.25 Aligned_cols=72 Identities=26% Similarity=0.210 Sum_probs=61.3
Q ss_pred CChHHHHHHHH----HHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHH
Q 007402 48 KPTLIQQASIP----LILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALI 123 (605)
Q Consensus 48 ~pt~iQ~~aIp----~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~ 123 (605)
+|+|.|.+.+. .+.+|+++++.||||+|||++|++|++..+... +.+++|++||++|+.|+.+.+..+.
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~-------~~kvli~t~T~~l~~Qi~~el~~l~ 75 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER-------KLKVLYLVRTNSQEEQVIKELRSLS 75 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH-------TCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc-------CCeEEEECCCHHHHHHHHHHHHHHh
Confidence 68999998885 456899999999999999999999999987652 5689999999999999999998876
Q ss_pred HHh
Q 007402 124 ELC 126 (605)
Q Consensus 124 ~~~ 126 (605)
...
T Consensus 76 ~~~ 78 (620)
T 4a15_A 76 STM 78 (620)
T ss_dssp HHS
T ss_pred hcc
Confidence 543
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.95 E-value=6.5e-09 Score=116.59 Aligned_cols=145 Identities=20% Similarity=0.231 Sum_probs=94.6
Q ss_pred hHHHHHHHHHHhCCCcEEEEcCCCchHH--HHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHHhc
Q 007402 50 TLIQQASIPLILEGKDVVARAKTGSGKT--FAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCK 127 (605)
Q Consensus 50 t~iQ~~aIp~~l~gkdvlv~a~TGsGKT--~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~ 127 (605)
++.|..||+.++.++++++.|++||||| ++++++.+..+.. ..+.++++++||.+++.++.+.+......++
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~------~~~~~vll~APTg~AA~~L~e~~~~~~~~l~ 224 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD------GERCRIRLAAPTGKAAARLTESLGKALRQLP 224 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS------SCCCCEEEEBSSHHHHHHHHHHHTHHHHHSS
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh------cCCCeEEEEeCChhHHHHHHHHHHHHHhcCC
Confidence 7899999999999999999999999999 7788888876522 2356899999999999999998887765542
Q ss_pred CCcceEEEEEeCCCCHHHHHHHHcCCC-cEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCcHHHHHHHH
Q 007402 128 GQVQLKVVQLTSSMPASDLRAALAGPP-DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 206 (605)
Q Consensus 128 ~~~~i~v~~l~~~~~~~~~~~~l~~~~-dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~~~l~~i~ 206 (605)
+..... ..... ..... .++-.+|+.. .+.... .....+++||||||+ |++ ...+..++
T Consensus 225 ----l~~~~~-~~~~~------~~~Tih~ll~~~~~~~--~~~~~~----~~~l~~d~lIIDEAs-ml~---~~~~~~Ll 283 (608)
T 1w36_D 225 ----LTDEQK-KRIPE------DASTLHRLLGAQPGSQ--RLRHHA----GNPLHLDVLVVDEAS-MID---LPMMSRLI 283 (608)
T ss_dssp ----CCSCCC-CSCSC------CCBTTTSCC-------------CT----TSCCSCSEEEECSGG-GCB---HHHHHHHH
T ss_pred ----CCHHHH-hccch------hhhhhHhhhccCCCch--HHHhcc----CCCCCCCEEEEechh-hCC---HHHHHHHH
Confidence 110000 00000 00001 1111222211 011111 112268899999999 554 56788999
Q ss_pred hhCCCCceEEEEeee
Q 007402 207 AVIPRGCQCLLMSAT 221 (605)
Q Consensus 207 ~~lp~~~q~il~SAT 221 (605)
..+|.+.|++++.-.
T Consensus 284 ~~l~~~~~liLvGD~ 298 (608)
T 1w36_D 284 DALPDHARVIFLGDR 298 (608)
T ss_dssp HTCCTTCEEEEEECT
T ss_pred HhCCCCCEEEEEcch
Confidence 999999999998754
No 95
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.90 E-value=8.6e-05 Score=83.38 Aligned_cols=68 Identities=16% Similarity=0.180 Sum_probs=54.0
Q ss_pred CCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q 007402 47 QKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMA 121 (605)
Q Consensus 47 ~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~ 121 (605)
..+++.|.+|+..++.+.-+++.||+|||||.+..- ++..+... .+.++|+++||..-+.++.+.+..
T Consensus 179 ~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~-~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSAT-IVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp CCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHH-HHHHHHTS------SSCCEEEEESSHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHH-HHHHHHHc------CCCeEEEEeCcHHHHHHHHHHHHh
Confidence 457899999999999888899999999999986433 44444431 356799999999999998887754
No 96
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.90 E-value=0.00011 Score=84.72 Aligned_cols=69 Identities=16% Similarity=0.197 Sum_probs=54.2
Q ss_pred CCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHH
Q 007402 47 QKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMAL 122 (605)
Q Consensus 47 ~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l 122 (605)
..+++.|.+|+..++.+.-+++.||+|||||.+..- ++..++.. .+.++|+++||..-+.++.+.+...
T Consensus 359 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~-~i~~l~~~------~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSAT-IVYHLSKI------HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHH-HHHHHHHH------HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHH-HHHHHHhC------CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 456899999999998877789999999999986443 33334331 2457999999999999999887653
No 97
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.90 E-value=2.8e-05 Score=87.81 Aligned_cols=66 Identities=15% Similarity=0.221 Sum_probs=52.0
Q ss_pred CChHHHHHHHHHHhCCCc-EEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q 007402 48 KPTLIQQASIPLILEGKD-VVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMA 121 (605)
Q Consensus 48 ~pt~iQ~~aIp~~l~gkd-vlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~ 121 (605)
.+.+-|.+||..++..++ .||.||+|||||.+.+-.|.+ ++.. +.++|+++||-.=++++.+.+..
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~-l~~~-------~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQ-AVKQ-------GLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHH-HHHT-------TCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHH-HHhC-------CCeEEEEcCchHHHHHHHHHHHh
Confidence 357899999999998776 689999999999875544444 4432 56799999999999888877653
No 98
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.87 E-value=4.1e-05 Score=84.99 Aligned_cols=127 Identities=17% Similarity=0.181 Sum_probs=82.8
Q ss_pred CChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHHhc
Q 007402 48 KPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCK 127 (605)
Q Consensus 48 ~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~ 127 (605)
.+++.|.+|+..++.++.+++.|+.|||||... ..++..+.. .+.++++++||...+..+.+.+.
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i-~~l~~~l~~-------~g~~Vl~~ApT~~Aa~~L~e~~~------- 253 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTT-KAVADLAES-------LGLEVGLCAPTGKAARRLGEVTG------- 253 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHH-HHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHHT-------
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHH-HHHHHHHHh-------cCCeEEEecCcHHHHHHhHhhhc-------
Confidence 578999999999999999999999999999753 223333332 25679999999988876655321
Q ss_pred CCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCcHHHHHHHHh
Q 007402 128 GQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207 (605)
Q Consensus 128 ~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~~~l~~i~~ 207 (605)
.....+ ...+...+. . +... .......++||||||+.+. ...+..++.
T Consensus 254 ----~~a~Ti---------h~ll~~~~~-------~----~~~~----~~~~~~~dvlIIDEasml~----~~~~~~Ll~ 301 (574)
T 3e1s_A 254 ----RTASTV---------HRLLGYGPQ-------G----FRHN----HLEPAPYDLLIVDEVSMMG----DALMLSLLA 301 (574)
T ss_dssp ----SCEEEH---------HHHTTEETT-------E----ESCS----SSSCCSCSEEEECCGGGCC----HHHHHHHHT
T ss_pred ----ccHHHH---------HHHHcCCcc-------h----hhhh----hcccccCCEEEEcCccCCC----HHHHHHHHH
Confidence 111111 111110000 0 0011 1223357899999999764 457888889
Q ss_pred hCCCCceEEEEeee
Q 007402 208 VIPRGCQCLLMSAT 221 (605)
Q Consensus 208 ~lp~~~q~il~SAT 221 (605)
.++...+++++.-+
T Consensus 302 ~~~~~~~lilvGD~ 315 (574)
T 3e1s_A 302 AVPPGARVLLVGDT 315 (574)
T ss_dssp TSCTTCEEEEEECT
T ss_pred hCcCCCEEEEEecc
Confidence 99888888887543
No 99
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.78 E-value=8.9e-05 Score=80.09 Aligned_cols=135 Identities=14% Similarity=0.165 Sum_probs=82.2
Q ss_pred HHHCCCCCChHHHHHHHHHHhCC----C-cEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHH
Q 007402 41 LNKKGIQKPTLIQQASIPLILEG----K-DVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQV 115 (605)
Q Consensus 41 l~~~g~~~pt~iQ~~aIp~~l~g----k-dvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv 115 (605)
...+.|..+++-|.+|+..++.. + .+++.|+.|||||.+. ..++..+.... ...+++++||...+..+
T Consensus 18 ~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~~------~~~il~~a~T~~Aa~~l 90 (459)
T 3upu_A 18 GSHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALISTG------ETGIILAAPTHAAKKIL 90 (459)
T ss_dssp ---CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHTT------CCCEEEEESSHHHHHHH
T ss_pred cCCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhcC------CceEEEecCcHHHHHHH
Confidence 34567889999999999876543 3 8999999999999643 44455554421 23699999998877666
Q ss_pred HHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHc------CCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeC
Q 007402 116 YSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALA------GPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDE 189 (605)
Q Consensus 116 ~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~------~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDE 189 (605)
.+.+ .+.+..++ ..+. .....+.. . ....+...++|||||
T Consensus 91 ~~~~-----------~~~~~T~h---------~~~~~~~~~~~~~~~~~~----------~----~~~~~~~~~~iiiDE 136 (459)
T 3upu_A 91 SKLS-----------GKEASTIH---------SILKINPVTYEENVLFEQ----------K----EVPDLAKCRVLICDE 136 (459)
T ss_dssp HHHH-----------SSCEEEHH---------HHHTEEEEECSSCEEEEE----------C----SCCCCSSCSEEEESC
T ss_pred Hhhh-----------ccchhhHH---------HHhccCcccccccchhcc----------c----ccccccCCCEEEEEC
Confidence 5543 11111110 1110 00000100 0 113455688999999
Q ss_pred cchhccCCcHHHHHHHHhhCCCCceEEEEee
Q 007402 190 ADLLLSYGYEDDLKALSAVIPRGCQCLLMSA 220 (605)
Q Consensus 190 ad~i~~~g~~~~l~~i~~~lp~~~q~il~SA 220 (605)
++.+. ...+..++..++...+++++.-
T Consensus 137 ~~~~~----~~~~~~l~~~~~~~~~~~~vGD 163 (459)
T 3upu_A 137 VSMYD----RKLFKILLSTIPPWCTIIGIGD 163 (459)
T ss_dssp GGGCC----HHHHHHHHHHSCTTCEEEEEEC
T ss_pred chhCC----HHHHHHHHHhccCCCEEEEECC
Confidence 99753 4566677777776777776653
No 100
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.74 E-value=0.00019 Score=82.65 Aligned_cols=68 Identities=16% Similarity=0.187 Sum_probs=53.8
Q ss_pred CCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q 007402 47 QKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMA 121 (605)
Q Consensus 47 ~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~ 121 (605)
..+++.|.+|+..++.+.-.++.||+|||||.+.. -++..+... .+.++|+++||..-+.++.+.+..
T Consensus 355 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~-~~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp CCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHH-HHHHHHHTT------CSSCEEEEESSHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHH-HHHHHHHHc------CCCcEEEEcCcHHHHHHHHHHHHH
Confidence 35689999999999988889999999999998643 344444431 356799999999999988887654
No 101
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.43 E-value=0.0078 Score=67.50 Aligned_cols=71 Identities=14% Similarity=0.128 Sum_probs=54.6
Q ss_pred CCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHH
Q 007402 47 QKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALI 123 (605)
Q Consensus 47 ~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~ 123 (605)
..+++-|.+||.. .+..++|.|+.|||||.+.+--+...+.... ....++|++++|+..+.++.+.+..+.
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~----~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVEN----CSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSC----CCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCC----CChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 4689999999962 3567999999999999876555554443321 224579999999999999999988765
No 102
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.83 E-value=0.011 Score=61.82 Aligned_cols=74 Identities=18% Similarity=0.128 Sum_probs=59.1
Q ss_pred CChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHHhc
Q 007402 48 KPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCK 127 (605)
Q Consensus 48 ~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~ 127 (605)
.++|+|...+..+-..+-+++..+-+.|||.+....++..++. ..+..++++.||++-|..+.+.+..++..++
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~------~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P 236 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF------NKDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS------SSSCEEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh------CCCCeEEEEeCCHHHHHHHHHHHHHHHHhCh
Confidence 6899999999766545678999999999999877766654443 2356799999999999999988888876554
No 103
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=96.69 E-value=0.013 Score=59.60 Aligned_cols=121 Identities=10% Similarity=0.018 Sum_probs=83.6
Q ss_pred ccchHHHHHHHHHhhc-CCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCCC
Q 007402 266 ERDKLLYILTLLKLEL-VQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ 344 (605)
Q Consensus 266 ~~~k~~~l~~llk~~~-~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~~ 344 (605)
...|+.+|-.++..-. .+.++|||++......-+..+|...|+..+-+.|..... +.. -....+.+.+.|....
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~-~~k----~~~~~~~i~Lltsag~ 181 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKS-AAA----ANDFSCTVHLFSSEGI 181 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCC
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhh-hhh----cccCCceEEEEECCCC
Confidence 5678888877776433 356999999999999999999999999999999985442 211 1234445555454322
Q ss_pred cccccccCCCCCcccccccCCCCCccccccccccccc-----cCCccEEEEeCCCCCchhH-HHhhcccccCC----CCc
Q 007402 345 TKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGID-----FKNVHTVINFEMPQNAAGY-VHRIGRTGRAY----NTG 414 (605)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~rGiD-----~~~v~~VI~fd~P~s~~~y-iqRiGRtgR~g----~~G 414 (605)
-|++ ....+.||-||.-+++..= +|.+-|+.|.| +.-
T Consensus 182 ---------------------------------~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v 228 (328)
T 3hgt_A 182 ---------------------------------NFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYA 228 (328)
T ss_dssp ---------------------------------CTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------C
T ss_pred ---------------------------------CCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcc
Confidence 1454 7889999999999999885 99888888863 355
Q ss_pred cEEEEeCCch
Q 007402 415 ASVSLVSPDE 424 (605)
Q Consensus 415 ~ai~~v~~~e 424 (605)
.++-|++...
T Consensus 229 ~V~RLvt~~T 238 (328)
T 3hgt_A 229 PIVRLVAINS 238 (328)
T ss_dssp CEEEEEETTS
T ss_pred eEEEEeCCCC
Confidence 6777777653
No 104
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.43 E-value=0.03 Score=62.24 Aligned_cols=73 Identities=18% Similarity=0.133 Sum_probs=58.1
Q ss_pred CChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHHh
Q 007402 48 KPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELC 126 (605)
Q Consensus 48 ~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~ 126 (605)
.++|+|...+..+-..+.+++.++-|+|||.+....++..++.. ++..++++.||++.|..+...+..++..+
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~------~~~~i~~va~t~~qA~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN------KDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTS------SSCEEEEEESSHHHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhC------CCCeEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 58999999987765567799999999999998776666555542 35679999999999999988887776544
No 105
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.08 E-value=0.022 Score=52.54 Aligned_cols=19 Identities=37% Similarity=0.459 Sum_probs=16.3
Q ss_pred CCCcEEEEcCCCchHHHHH
Q 007402 62 EGKDVVARAKTGSGKTFAY 80 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a~ 80 (605)
.|+.+++.+|+|+|||...
T Consensus 37 ~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp GCCEEEECCSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4788999999999999743
No 106
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.66 E-value=0.012 Score=62.42 Aligned_cols=107 Identities=20% Similarity=0.135 Sum_probs=61.8
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHH
Q 007402 65 DVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPAS 144 (605)
Q Consensus 65 dvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~ 144 (605)
=.++.|+.|||||... ..++.. ...+|++||++++..+.+.+... +. .
T Consensus 163 v~~I~G~aGsGKTt~I-----~~~~~~--------~~~lVlTpT~~aa~~l~~kl~~~--------~~--------~--- 210 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEI-----LSRVNF--------EEDLILVPGRQAAEMIRRRANAS--------GI--------I--- 210 (446)
T ss_dssp EEEEEECTTSCHHHHH-----HHHCCT--------TTCEEEESCHHHHHHHHHHHTTT--------SC--------C---
T ss_pred EEEEEcCCCCCHHHHH-----HHHhcc--------CCeEEEeCCHHHHHHHHHHhhhc--------Cc--------c---
Confidence 4689999999999843 222221 23799999999998887765321 00 0
Q ss_pred HHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeee
Q 007402 145 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSAT 221 (605)
Q Consensus 145 ~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SAT 221 (605)
.....-|.|-++++- +.. ....-..++||||||-.+ . ...+..++..++. .+++++.-+
T Consensus 211 -------~~~~~~V~T~dsfL~---~~~---~~~~~~~d~liiDE~sm~-~---~~~l~~l~~~~~~-~~vilvGD~ 269 (446)
T 3vkw_A 211 -------VATKDNVRTVDSFLM---NYG---KGARCQFKRLFIDEGLML-H---TGCVNFLVEMSLC-DIAYVYGDT 269 (446)
T ss_dssp -------CCCTTTEEEHHHHHH---TTT---SSCCCCCSEEEEETGGGS-C---HHHHHHHHHHTTC-SEEEEEECT
T ss_pred -------ccccceEEEeHHhhc---CCC---CCCCCcCCEEEEeCcccC-C---HHHHHHHHHhCCC-CEEEEecCc
Confidence 001122556444322 221 011224789999999744 3 3445555555554 666666543
No 107
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=95.27 E-value=0.032 Score=63.52 Aligned_cols=72 Identities=17% Similarity=0.122 Sum_probs=55.7
Q ss_pred CCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHH
Q 007402 47 QKPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIE 124 (605)
Q Consensus 47 ~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~ 124 (605)
..+++-|.+||.. .+..++|.|..|||||.+..--+...+.... ....++|+++.|+..|.++.+.+..+..
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~----~~p~~IL~vTFTnkAA~Em~~Rl~~~l~ 81 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKH----VAPWNILAITFTNKAAREMRERVQSLLG 81 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTC----CCGGGEEEEESSHHHHHHHHHHHHHHHG
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcC----CCHHHeEEEeccHHHHHHHHHHHHHHhc
Confidence 4689999999975 3568999999999999876655555444321 2345799999999999999998887653
No 108
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.26 E-value=0.0069 Score=54.59 Aligned_cols=37 Identities=27% Similarity=0.444 Sum_probs=26.1
Q ss_pred cCcccC--CCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHH
Q 007402 26 KSFEEL--GLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFA 79 (605)
Q Consensus 26 ~~f~~~--~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a 79 (605)
.+|++| +.+..++.+|... .|+.+++.+|+|+|||..
T Consensus 14 ~~~~~f~~g~n~~~~~~l~~~-----------------~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 14 PSFDKFLGTENAELVYVLRHK-----------------HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCCCCCCSCCTHHHHHHCCCC-----------------CCSEEEEESSSTTTTCHH
T ss_pred cchhhcCcCccHHHHHHHHhc-----------------CCCEEEEECCCCCCHHHH
Confidence 344444 4666666665543 688899999999999973
No 109
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.02 E-value=0.02 Score=53.38 Aligned_cols=39 Identities=26% Similarity=0.155 Sum_probs=26.8
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCc
Q 007402 62 EGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPT 108 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPt 108 (605)
.|+=.++.+++|+|||.+.+- ++.++.. .+.+++++.|.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~-~~~~~~~-------~g~~v~~~~~~ 40 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLS-FVEIYKL-------GKKKVAVFKPK 40 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHH-HHHHHHH-------TTCEEEEEEEC
T ss_pred ccEEEEEECCCCCCHHHHHHH-HHHHHHH-------CCCeEEEEeec
Confidence 356678999999999986533 3343333 14568888886
No 110
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=94.86 E-value=0.041 Score=66.50 Aligned_cols=73 Identities=22% Similarity=0.221 Sum_probs=57.8
Q ss_pred CChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHH
Q 007402 48 KPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIE 124 (605)
Q Consensus 48 ~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~ 124 (605)
.+|+-|.++|..- +++++|.|..|||||.+.+--++..+..... .....++|++++|+..+..+.+.+...+.
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~--~~~~~~il~~Tft~~aa~e~~~ri~~~l~ 82 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEEN--PIDVDRLLVVTFTNASAAEMKHRIAEALE 82 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSS--CCCGGGEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCC--CCCccceEEEeccHHHHHHHHHHHHHHHH
Confidence 5799999999753 8899999999999999877777776655211 12345799999999999999998887543
No 111
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.81 E-value=0.073 Score=51.24 Aligned_cols=40 Identities=28% Similarity=0.151 Sum_probs=27.1
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcH
Q 007402 62 EGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTR 109 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtr 109 (605)
.|.=+++.+++|+|||.+.+- ++.++.. .+.+++++.|..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~-~~~r~~~-------~g~kVli~~~~~ 50 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIR-RLHRLEY-------ADVKYLVFKPKI 50 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHH-HHHHHHH-------TTCCEEEEEECC
T ss_pred CcEEEEEECCCCCcHHHHHHH-HHHHHHh-------cCCEEEEEEecc
Confidence 455688999999999976543 4444433 255688887753
No 112
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.80 E-value=0.071 Score=50.04 Aligned_cols=38 Identities=21% Similarity=0.098 Sum_probs=27.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCc
Q 007402 63 GKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPT 108 (605)
Q Consensus 63 gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPt 108 (605)
|+=.++.+++|||||.+.+ -++.+... .+.+++++.|.
T Consensus 8 g~i~v~~G~mgsGKTT~ll-~~a~r~~~-------~g~kV~v~k~~ 45 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELI-RRIRRAKI-------AKQKIQVFKPE 45 (191)
T ss_dssp CEEEEEECSTTSSHHHHHH-HHHHHHHH-------TTCCEEEEEEC
T ss_pred CEEEEEECCCCCcHHHHHH-HHHHHHHH-------CCCEEEEEEec
Confidence 4567899999999997654 44444433 25679999886
No 113
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=94.80 E-value=0.037 Score=62.42 Aligned_cols=70 Identities=17% Similarity=0.087 Sum_probs=54.1
Q ss_pred CChHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHH
Q 007402 48 KPTLIQQASIPLILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALI 123 (605)
Q Consensus 48 ~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~ 123 (605)
.+++-|.+||.. .+..++|.|..|||||.+.+--+...+.... ....++|+|+.|+..+.++.+.+....
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~----~~~~~IL~lTfT~~Aa~em~~Rl~~~l 71 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG----YQARHIAAVTFTNKAAREMKERVGQTL 71 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHC----CCGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcC----CCHHHeEEEeccHHHHHHHHHHHHHHc
Confidence 478999999974 3678999999999999876655555444321 124579999999999999999887764
No 114
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=94.56 E-value=0.046 Score=60.96 Aligned_cols=113 Identities=19% Similarity=0.207 Sum_probs=72.8
Q ss_pred CChHHHHHHHHHHhCC--CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHH
Q 007402 48 KPTLIQQASIPLILEG--KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIEL 125 (605)
Q Consensus 48 ~pt~iQ~~aIp~~l~g--kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~ 125 (605)
.+|.-|.+|+..++.- .-.++.|+-|.|||.+..+.+.+ +.. .++|.+||.+=+..+.+ +.
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~-~~~----------~~~vtAP~~~a~~~l~~----~~-- 237 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISR-IAG----------RAIVTAPAKASTDVLAQ----FA-- 237 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHH-SSS----------CEEEECSSCCSCHHHHH----HH--
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHH-HHh----------CcEEECCCHHHHHHHHH----Hh--
Confidence 5799999999888763 35789999999999766655443 211 26999999875543322 21
Q ss_pred hcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCcHHHHHHH
Q 007402 126 CKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL 205 (605)
Q Consensus 126 ~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~~~l~~i 205 (605)
.. . |-+..|+.+.. .....++||||||=.|- .+.+..+
T Consensus 238 -~~--~------------------------i~~~~Pd~~~~-----------~~~~~dlliVDEAAaIp----~pll~~l 275 (671)
T 2zpa_A 238 -GE--K------------------------FRFIAPDALLA-----------SDEQADWLVVDEAAAIP----APLLHQL 275 (671)
T ss_dssp -GG--G------------------------CCBCCHHHHHH-----------SCCCCSEEEEETGGGSC----HHHHHHH
T ss_pred -hC--C------------------------eEEeCchhhhh-----------CcccCCEEEEEchhcCC----HHHHHHH
Confidence 11 1 11223433221 12247899999997764 5677777
Q ss_pred HhhCCCCceEEEEeeecC
Q 007402 206 SAVIPRGCQCLLMSATSS 223 (605)
Q Consensus 206 ~~~lp~~~q~il~SATl~ 223 (605)
+...+ .++||.|..
T Consensus 276 l~~~~----~v~~~tTv~ 289 (671)
T 2zpa_A 276 VSRFP----RTLLTTTVQ 289 (671)
T ss_dssp HTTSS----EEEEEEEBS
T ss_pred HhhCC----eEEEEecCC
Confidence 77544 578888864
No 115
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.51 E-value=0.13 Score=50.77 Aligned_cols=17 Identities=29% Similarity=0.210 Sum_probs=14.8
Q ss_pred CcEEEEcCCCchHHHHH
Q 007402 64 KDVVARAKTGSGKTFAY 80 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a~ 80 (605)
..+++.||+|+|||..+
T Consensus 65 ~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALA 81 (272)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 47999999999999854
No 116
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.40 E-value=0.84 Score=41.18 Aligned_cols=18 Identities=28% Similarity=0.287 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCchHHHHH
Q 007402 63 GKDVVARAKTGSGKTFAY 80 (605)
Q Consensus 63 gkdvlv~a~TGsGKT~a~ 80 (605)
...+++.|++|+|||...
T Consensus 43 ~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SCEEEEECCTTSCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 367999999999999753
No 117
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.20 E-value=0.21 Score=51.31 Aligned_cols=28 Identities=32% Similarity=0.373 Sum_probs=19.4
Q ss_pred ceEEEEeCcchhccCC-cHHHHHHHHhhC
Q 007402 182 LKILVLDEADLLLSYG-YEDDLKALSAVI 209 (605)
Q Consensus 182 l~~lViDEad~i~~~g-~~~~l~~i~~~l 209 (605)
-.+|||||+|.+.... ....+..++...
T Consensus 131 ~~vlilDEi~~l~~~~~~~~~l~~l~~~~ 159 (387)
T 2v1u_A 131 IYIIVLDEIDFLPKRPGGQDLLYRITRIN 159 (387)
T ss_dssp EEEEEEETTTHHHHSTTHHHHHHHHHHGG
T ss_pred eEEEEEccHhhhcccCCCChHHHhHhhch
Confidence 5589999999987652 345566666544
No 118
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=94.20 E-value=0.6 Score=41.97 Aligned_cols=73 Identities=15% Similarity=0.230 Sum_probs=55.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHH----cCCCcEEEECCchHHHHHhcCCCC
Q 007402 99 APAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL----AGPPDIVIATPGCMPKCLSTGVLQ 174 (605)
Q Consensus 99 ~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l----~~~~dIvV~TP~~l~~~l~~~~~~ 174 (605)
+.++||.|+|+.-+..+++.+... ++.+..++|+++.......+ .+...|+|+| +.+..|
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~--------~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~~~G--- 98 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL--------GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVAT-----DVAARG--- 98 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT--------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-----GGGTTT---
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc--------CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEC-----ChhhcC---
Confidence 457999999999999998887764 67888999998876554433 3678999999 344444
Q ss_pred CcccCCCceEEEEeC
Q 007402 175 SKSFSDSLKILVLDE 189 (605)
Q Consensus 175 ~~~~l~~l~~lViDE 189 (605)
+++.+++++|.-+
T Consensus 99 --ld~~~~~~Vi~~~ 111 (163)
T 2hjv_A 99 --IDIENISLVINYD 111 (163)
T ss_dssp --CCCSCCSEEEESS
T ss_pred --CchhcCCEEEEeC
Confidence 6677788887644
No 119
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=94.14 E-value=0.2 Score=50.84 Aligned_cols=40 Identities=13% Similarity=0.169 Sum_probs=25.1
Q ss_pred CceEEEEeCcchhccCCcHHHHHHHHhh--CC-CCceEEEEeeecC
Q 007402 181 SLKILVLDEADLLLSYGYEDDLKALSAV--IP-RGCQCLLMSATSS 223 (605)
Q Consensus 181 ~l~~lViDEad~i~~~g~~~~l~~i~~~--lp-~~~q~il~SATl~ 223 (605)
..-++||||+|.+.. .+.+..++.. .+ ...-+|+.++|+.
T Consensus 132 ~~~ii~lDE~d~l~~---q~~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 132 RKTLILIQNPENLLS---EKILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp CEEEEEEECCSSSCC---THHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred CceEEEEecHHHhhc---chHHHHHHhcccccCCcEEEEEEecCcc
Confidence 456899999999882 3445555442 12 2345667787764
No 120
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.13 E-value=0.15 Score=51.59 Aligned_cols=17 Identities=24% Similarity=0.323 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCchHHHH
Q 007402 63 GKDVVARAKTGSGKTFA 79 (605)
Q Consensus 63 gkdvlv~a~TGsGKT~a 79 (605)
+..+++.||+|+|||..
T Consensus 37 ~~~lll~G~~GtGKT~l 53 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHL 53 (324)
T ss_dssp CSSEEEECSSSSSHHHH
T ss_pred CCeEEEECCCCCcHHHH
Confidence 46899999999999974
No 121
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=94.09 E-value=0.42 Score=44.54 Aligned_cols=71 Identities=14% Similarity=0.255 Sum_probs=55.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHH----cCCCcEEEECCchHHHHHhcCCCC
Q 007402 99 APAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL----AGPPDIVIATPGCMPKCLSTGVLQ 174 (605)
Q Consensus 99 ~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l----~~~~dIvV~TP~~l~~~l~~~~~~ 174 (605)
+.++||.|+|++-+..+++.+... ++.+..++|+.+...+...+ .+...|+|+| +.+..|
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~--------g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~~~~~G--- 117 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK--------GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-----DVASKG--- 117 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH--------TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-----HHHHTT---
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc--------CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-----CchhcC---
Confidence 346999999999999999888764 67888999998876554433 3678999999 556666
Q ss_pred CcccCCCceEEEE
Q 007402 175 SKSFSDSLKILVL 187 (605)
Q Consensus 175 ~~~~l~~l~~lVi 187 (605)
+++.+++++|.
T Consensus 118 --ldi~~v~~VI~ 128 (191)
T 2p6n_A 118 --LDFPAIQHVIN 128 (191)
T ss_dssp --CCCCCCSEEEE
T ss_pred --CCcccCCEEEE
Confidence 66777887776
No 122
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=93.95 E-value=0.16 Score=58.00 Aligned_cols=61 Identities=18% Similarity=0.166 Sum_probs=53.5
Q ss_pred CCeEEEEecchhHHHHHHHHHHH----cCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 007402 283 QKKALIFTNTIDMAFRLKLFLEK----FGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDT 343 (605)
Q Consensus 283 ~~k~IIFv~s~~~~~~L~~~L~~----~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~~ 343 (605)
+.+++|.++++.-+......+.. .|++++.++|+++...|..+++.+..|.++|+|+|...
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~l 481 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHAL 481 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTH
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHH
Confidence 57899999999888777766654 48999999999999999999999999999999999753
No 123
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=93.83 E-value=0.078 Score=50.58 Aligned_cols=18 Identities=17% Similarity=0.147 Sum_probs=15.7
Q ss_pred CCCcEEEEcCCCchHHHH
Q 007402 62 EGKDVVARAKTGSGKTFA 79 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a 79 (605)
.+..+++.||+|+|||..
T Consensus 51 ~~~~~ll~G~~G~GKT~l 68 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHL 68 (242)
T ss_dssp SCSEEEEECSTTSSHHHH
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 357899999999999974
No 124
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=93.77 E-value=0.96 Score=41.89 Aligned_cols=40 Identities=28% Similarity=0.463 Sum_probs=25.7
Q ss_pred CCceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEee
Q 007402 180 DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSA 220 (605)
Q Consensus 180 ~~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SA 220 (605)
..-.+|||||+|.+... ....+..++...+....+|+.|.
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~~ 140 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSCN 140 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEeC
Confidence 34679999999997543 23445555666565666665543
No 125
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.74 E-value=0.23 Score=44.95 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCchHHHHH
Q 007402 63 GKDVVARAKTGSGKTFAY 80 (605)
Q Consensus 63 gkdvlv~a~TGsGKT~a~ 80 (605)
...+++.+|+|+|||...
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 467999999999999743
No 126
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=93.64 E-value=0.24 Score=45.27 Aligned_cols=71 Identities=17% Similarity=0.227 Sum_probs=53.7
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHH----cCCCcEEEECCchHHHHHhcCCCC
Q 007402 99 APAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL----AGPPDIVIATPGCMPKCLSTGVLQ 174 (605)
Q Consensus 99 ~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l----~~~~dIvV~TP~~l~~~l~~~~~~ 174 (605)
..++||.|+++.-+..++..+... ++.+..++|+++.......+ .+..+|+|+|. .+..|
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~--------~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~~G--- 97 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD--------GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----VCARG--- 97 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT--------TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----SCCTT---
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc--------CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----chhcC---
Confidence 568999999999999988877653 67888999998876654433 36789999992 23333
Q ss_pred CcccCCCceEEEE
Q 007402 175 SKSFSDSLKILVL 187 (605)
Q Consensus 175 ~~~~l~~l~~lVi 187 (605)
+++..++++|.
T Consensus 98 --id~~~~~~Vi~ 108 (175)
T 2rb4_A 98 --IDVKQVTIVVN 108 (175)
T ss_dssp --TCCTTEEEEEE
T ss_pred --CCcccCCEEEE
Confidence 67778888885
No 127
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=93.62 E-value=0.071 Score=52.83 Aligned_cols=55 Identities=16% Similarity=0.207 Sum_probs=33.0
Q ss_pred hcccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHH--HhCCCcEEEEcCCCchHHHH
Q 007402 23 EEEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPL--ILEGKDVVARAKTGSGKTFA 79 (605)
Q Consensus 23 ~~~~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~--~l~gkdvlv~a~TGsGKT~a 79 (605)
.+..+|+++.--+...+.|...-. .|. ...+.+.. +..++.+++.||+|+|||..
T Consensus 11 ~~~~~~~~i~G~~~~~~~l~~~~~-~~~-~~~~~~~~~~~~~~~~~ll~G~~GtGKT~l 67 (285)
T 3h4m_A 11 RPNVRYEDIGGLEKQMQEIREVVE-LPL-KHPELFEKVGIEPPKGILLYGPPGTGKTLL 67 (285)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTH-HHH-HCHHHHHHHCCCCCSEEEEESSSSSSHHHH
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHH-HHh-hCHHHHHhcCCCCCCeEEEECCCCCcHHHH
Confidence 345789999877777777665310 000 00111111 12457899999999999974
No 128
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.50 E-value=0.11 Score=49.50 Aligned_cols=39 Identities=23% Similarity=0.113 Sum_probs=26.4
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcH
Q 007402 63 GKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTR 109 (605)
Q Consensus 63 gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtr 109 (605)
|+=.++.++.|||||.+.+-- +.+... .+.+++++.|..
T Consensus 28 G~l~vitG~MgsGKTT~lL~~-a~r~~~-------~g~kVli~k~~~ 66 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRR-VRRTQF-------AKQHAIVFKPCI 66 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHH-HHHHHH-------TTCCEEEEECC-
T ss_pred CEEEEEECCCCCcHHHHHHHH-HHHHHH-------CCCEEEEEEecc
Confidence 444678999999999765443 444433 256799999865
No 129
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.41 E-value=0.038 Score=57.98 Aligned_cols=56 Identities=20% Similarity=0.401 Sum_probs=35.7
Q ss_pred hhhcccCcccCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHH
Q 007402 21 EAEEEKSFEELGLDLRLVHALNKK---GIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFA 79 (605)
Q Consensus 21 ~~~~~~~f~~~~L~~~l~~al~~~---g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a 79 (605)
...+..+|++.|=-+...+.|.+. -+.+|-.++...++ --+.+|+.||+|+|||+.
T Consensus 140 ~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~---~prGvLL~GPPGTGKTll 198 (405)
T 4b4t_J 140 EKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIA---QPKGVILYGPPGTGKTLL 198 (405)
T ss_dssp ECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCC---CCCCEEEESCSSSSHHHH
T ss_pred cCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCceEEeCCCCCCHHHH
Confidence 344578999997444444555542 23445545443332 237899999999999974
No 130
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.37 E-value=0.23 Score=50.19 Aligned_cols=39 Identities=18% Similarity=0.304 Sum_probs=25.0
Q ss_pred CceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEe
Q 007402 181 SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMS 219 (605)
Q Consensus 181 ~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~S 219 (605)
...+|||||+|.+........+..+++..+...++|+.+
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~ 143 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITA 143 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEE
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 578999999999862223445555555555556666643
No 131
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=93.35 E-value=0.19 Score=51.26 Aligned_cols=40 Identities=15% Similarity=0.181 Sum_probs=26.1
Q ss_pred ChHHHHHHHHHHh----CCC---cEEEEcCCCchHHHHHHHHHHHHHh
Q 007402 49 PTLIQQASIPLIL----EGK---DVVARAKTGSGKTFAYLLPLLHRLF 89 (605)
Q Consensus 49 pt~iQ~~aIp~~l----~gk---dvlv~a~TGsGKT~a~~lpil~~ll 89 (605)
.+|+|.+++..+. +|+ -+++.||.|+|||.... .+.+.+.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~-~la~~l~ 49 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY-ALSRYLL 49 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH-HHHHHHT
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH-HHHHHHh
Confidence 3577777765443 343 38999999999997543 3344444
No 132
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=93.24 E-value=0.34 Score=43.74 Aligned_cols=72 Identities=17% Similarity=0.316 Sum_probs=53.8
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHH----cCCCcEEEECCchHHHHHhcCCCC
Q 007402 99 APAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL----AGPPDIVIATPGCMPKCLSTGVLQ 174 (605)
Q Consensus 99 ~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l----~~~~dIvV~TP~~l~~~l~~~~~~ 174 (605)
+.++||.|+|++-+..++..+... ++.+..++|+.+...+...+ .+...|+|+| +.+..|
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~--------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~~~G--- 93 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND--------KFTVSAIYSDLPQQERDTIMKEFRSGSSRILIST-----DLLARG--- 93 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT--------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEE-----GGGTTT---
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc--------CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEc-----ChhhcC---
Confidence 457999999999999988887653 57888899998876554433 3678999999 334444
Q ss_pred CcccCCCceEEEEe
Q 007402 175 SKSFSDSLKILVLD 188 (605)
Q Consensus 175 ~~~~l~~l~~lViD 188 (605)
.++..++++|.-
T Consensus 94 --~d~~~~~~Vi~~ 105 (165)
T 1fuk_A 94 --IDVQQVSLVINY 105 (165)
T ss_dssp --CCCCSCSEEEES
T ss_pred --CCcccCCEEEEe
Confidence 666778877763
No 133
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=92.97 E-value=0.3 Score=46.27 Aligned_cols=71 Identities=15% Similarity=0.249 Sum_probs=54.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHH----cCCCcEEEECCchHHHHHhcCCCC
Q 007402 99 APAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL----AGPPDIVIATPGCMPKCLSTGVLQ 174 (605)
Q Consensus 99 ~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l----~~~~dIvV~TP~~l~~~l~~~~~~ 174 (605)
+.++||.|+|++-+..+++.+... ++.+..++|+.+...+...+ .+..+|+|+| +.+..|
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~--------~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~~~G--- 94 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL--------GHPAQALHGDLSQGERERVLGAFRQGEVRVLVAT-----DVAARG--- 94 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH--------TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEEC-----TTTTCS---
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc--------CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEec-----ChhhcC---
Confidence 457999999999999988888764 67888999998876655443 3678999999 334444
Q ss_pred CcccCCCceEEEE
Q 007402 175 SKSFSDSLKILVL 187 (605)
Q Consensus 175 ~~~~l~~l~~lVi 187 (605)
+++..+.+||.
T Consensus 95 --idi~~v~~Vi~ 105 (212)
T 3eaq_A 95 --LDIPQVDLVVH 105 (212)
T ss_dssp --SSCCCBSEEEE
T ss_pred --CCCccCcEEEE
Confidence 67777887763
No 134
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.74 E-value=0.68 Score=43.51 Aligned_cols=16 Identities=25% Similarity=0.218 Sum_probs=13.9
Q ss_pred cEEEEcCCCchHHHHH
Q 007402 65 DVVARAKTGSGKTFAY 80 (605)
Q Consensus 65 dvlv~a~TGsGKT~a~ 80 (605)
-+++.||+|+|||...
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999743
No 135
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.51 E-value=0.34 Score=49.92 Aligned_cols=35 Identities=29% Similarity=0.269 Sum_probs=21.7
Q ss_pred EEEEeCcchhccCCcHHH-HHHHHhhCCCCceEEEEe
Q 007402 184 ILVLDEADLLLSYGYEDD-LKALSAVIPRGCQCLLMS 219 (605)
Q Consensus 184 ~lViDEad~i~~~g~~~~-l~~i~~~lp~~~q~il~S 219 (605)
+|||||+|.+......+. +..+.... ....+|+.|
T Consensus 136 vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t 171 (384)
T 2qby_B 136 IIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMIS 171 (384)
T ss_dssp EEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEEC
T ss_pred EEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEE
Confidence 899999999876543344 55565554 333444433
No 136
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=92.30 E-value=0.51 Score=49.29 Aligned_cols=62 Identities=13% Similarity=0.125 Sum_probs=56.2
Q ss_pred cCCCeEEEEecchhHHHHHHHHHHH---cCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 007402 281 LVQKKALIFTNTIDMAFRLKLFLEK---FGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 342 (605)
Q Consensus 281 ~~~~k~IIFv~s~~~~~~L~~~L~~---~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~ 342 (605)
....++||.++++..+..+...+.. .++.++.++|+.+...+....+.+..|..+|+|+|..
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~ 126 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQ 126 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHH
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHH
Confidence 3467899999999999999999988 4889999999999999888899999999999999975
No 137
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=92.26 E-value=0.33 Score=44.27 Aligned_cols=72 Identities=13% Similarity=0.187 Sum_probs=53.2
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHH----cCCCcEEEECCchHHHHHhcCCCC
Q 007402 99 APAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL----AGPPDIVIATPGCMPKCLSTGVLQ 174 (605)
Q Consensus 99 ~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l----~~~~dIvV~TP~~l~~~l~~~~~~ 174 (605)
+.++||.|+++.-+..+++.+... ++.+..++|+++.......+ .+...|+|+|. .+..|
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~--------~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~G--- 94 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ--------NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----LFGRG--- 94 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT--------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS-----CCSTT---
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc--------CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC-----chhcC---
Confidence 457999999999999988887664 57888999998876554433 36789999993 22333
Q ss_pred CcccCCCceEEEEe
Q 007402 175 SKSFSDSLKILVLD 188 (605)
Q Consensus 175 ~~~~l~~l~~lViD 188 (605)
+++..++++|.-
T Consensus 95 --ldi~~~~~Vi~~ 106 (172)
T 1t5i_A 95 --MDIERVNIAFNY 106 (172)
T ss_dssp --CCGGGCSEEEES
T ss_pred --cchhhCCEEEEE
Confidence 666777777763
No 138
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=92.21 E-value=1.2 Score=44.36 Aligned_cols=55 Identities=20% Similarity=0.245 Sum_probs=31.9
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHH-HhCCCcEEEEcCCCchHHHH
Q 007402 24 EEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPL-ILEGKDVVARAKTGSGKTFA 79 (605)
Q Consensus 24 ~~~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~-~l~gkdvlv~a~TGsGKT~a 79 (605)
+..+|++++-.+.+.+.|.+.- ..|.......... +..++.+++.||+|+|||..
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v-~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~l 65 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELV-QYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 65 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHH-HHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHH-HHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHH
Confidence 4578999976666666666420 0010011111111 12357899999999999984
No 139
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=92.18 E-value=0.56 Score=47.41 Aligned_cols=51 Identities=16% Similarity=0.248 Sum_probs=32.3
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHh-----CCCcEEEEcCCCchHHHHH
Q 007402 24 EEKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLIL-----EGKDVVARAKTGSGKTFAY 80 (605)
Q Consensus 24 ~~~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l-----~gkdvlv~a~TGsGKT~a~ 80 (605)
+..+|+++.-...+.+.|.+.=. .|. ..|... ..+.+|+.||+|+|||...
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~---~~~---~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVI---LPV---KFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH---HHH---HCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHH---HHH---hCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 45679999877777777765311 111 011111 1357999999999999743
No 140
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=92.14 E-value=0.33 Score=49.31 Aligned_cols=52 Identities=15% Similarity=0.178 Sum_probs=30.7
Q ss_pred cccCcccCCCCHHHHHHHHHCC---CCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHH
Q 007402 24 EEKSFEELGLDLRLVHALNKKG---IQKPTLIQQASIPLILEGKDVVARAKTGSGKTFA 79 (605)
Q Consensus 24 ~~~~f~~~~L~~~l~~al~~~g---~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a 79 (605)
+..+|++++--+.+.+.|.+.- ...|..++. .....+.+++.||+|+|||..
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~----~~~~~~~iLL~GppGtGKT~l 61 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG----KRTPWRGILLFGPPGTGKSYL 61 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT----TCCCCSEEEEESSSSSCHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC----CCCCCceEEEECCCCccHHHH
Confidence 4568999986666666665420 111111110 011226799999999999974
No 141
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.13 E-value=0.88 Score=48.13 Aligned_cols=54 Identities=15% Similarity=0.209 Sum_probs=35.3
Q ss_pred CCceEEEEeCcchhc---cCCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHh
Q 007402 180 DSLKILVLDEADLLL---SYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLI 233 (605)
Q Consensus 180 ~~l~~lViDEad~i~---~~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~ 233 (605)
...+++|||++-++. +..+...+..+...+.+..-++.++|+...+.......|
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f 234 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRF 234 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHH
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHH
Confidence 457899999997643 233456666776666666667778888765554444443
No 142
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=91.93 E-value=0.26 Score=46.23 Aligned_cols=39 Identities=23% Similarity=0.166 Sum_probs=27.1
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCc
Q 007402 62 EGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPT 108 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPt 108 (605)
.|+=.++.++.|||||.. ++-.+.+.... +.+++++.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~-Ll~~i~n~~~~-------~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTE-LMRRVRRFQIA-------QYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHH-HHHHHHHHHHT-------TCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHH-HHHHHHHHHHc-------CCeEEEEccc
Confidence 356688999999999954 44445444432 4568888885
No 143
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=91.88 E-value=0.64 Score=43.15 Aligned_cols=17 Identities=29% Similarity=0.464 Sum_probs=15.0
Q ss_pred CcEEEEcCCCchHHHHH
Q 007402 64 KDVVARAKTGSGKTFAY 80 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a~ 80 (605)
+.+++.+|+|+|||...
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 68999999999999753
No 144
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=91.70 E-value=0.73 Score=48.94 Aligned_cols=41 Identities=22% Similarity=0.340 Sum_probs=24.2
Q ss_pred CceEEEEeCcchhccC-CcHHHHHHHHhh-CCCCceEEEEeee
Q 007402 181 SLKILVLDEADLLLSY-GYEDDLKALSAV-IPRGCQCLLMSAT 221 (605)
Q Consensus 181 ~l~~lViDEad~i~~~-g~~~~l~~i~~~-lp~~~q~il~SAT 221 (605)
...+|+|||+|.+... .....+..++.. ...+.++|+.|..
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 3568999999998753 233444444443 3345566654433
No 145
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=91.48 E-value=2.8 Score=39.12 Aligned_cols=53 Identities=19% Similarity=0.333 Sum_probs=41.1
Q ss_pred CCceEEEEeCcchhccCCcH--HHHHHHHhhCCCCceEEEEeeecChhHHHHHHH
Q 007402 180 DSLKILVLDEADLLLSYGYE--DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKL 232 (605)
Q Consensus 180 ~~l~~lViDEad~i~~~g~~--~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~ 232 (605)
..+++||+||+-..+.+|+. +++..++..-|...-+|+.+--.++.+..+..+
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~AD~ 173 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLADT 173 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHCSE
T ss_pred CCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhCcc
Confidence 46899999999887777753 677778888888888888888888777665543
No 146
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.30 E-value=0.86 Score=46.31 Aligned_cols=43 Identities=14% Similarity=0.261 Sum_probs=29.0
Q ss_pred CCceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeecC
Q 007402 180 DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSS 223 (605)
Q Consensus 180 ~~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl~ 223 (605)
.+.+++||||+|. ++......+..++...+.+..+|+.|-.+.
T Consensus 133 ~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 133 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMS 175 (354)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred CCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHH
Confidence 4578999999999 444445666677777666666666665443
No 147
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=91.22 E-value=0.13 Score=51.50 Aligned_cols=17 Identities=24% Similarity=0.274 Sum_probs=14.9
Q ss_pred CcEEEEcCCCchHHHHH
Q 007402 64 KDVVARAKTGSGKTFAY 80 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a~ 80 (605)
..+++.||+|+|||...
T Consensus 68 ~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 47999999999999754
No 148
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=91.22 E-value=0.43 Score=45.93 Aligned_cols=40 Identities=20% Similarity=0.118 Sum_probs=27.5
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcH
Q 007402 62 EGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTR 109 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtr 109 (605)
.|+=.++.++.|||||.+.+--+. +... .+.+++++-|..
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~-r~~~-------~g~kvli~kp~~ 57 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVR-RFQI-------AQYKCLVIKYAK 57 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-HHHT-------TTCCEEEEEETT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHH-HHHH-------CCCeEEEEeecC
Confidence 366678999999999976544433 3322 366799988854
No 149
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=91.16 E-value=5.4 Score=43.26 Aligned_cols=91 Identities=9% Similarity=0.125 Sum_probs=64.3
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHH----cCCCcEEEECCchHHHHHhcCCC
Q 007402 98 LAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL----AGPPDIVIATPGCMPKCLSTGVL 173 (605)
Q Consensus 98 ~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l----~~~~dIvV~TP~~l~~~l~~~~~ 173 (605)
.+.++||.|+|+.-|..+++.+..... . ++.+..++|+++...+...+ .+..+|+||| +.+..|
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~---~--~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT-----~~~~~G-- 405 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFK---K--DLPILEFHGKITQNKRTSLVKRFKKDESGILVCT-----DVGARG-- 405 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHT---T--TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEEC-----GGGTSS--
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhcc---C--CceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEc-----chhhcC--
Confidence 366899999999999999998887642 2 57888899998876554433 3778999999 344455
Q ss_pred CCcccCCCceEEEEeCcchhccCCcHHHHHHHHh
Q 007402 174 QSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207 (605)
Q Consensus 174 ~~~~~l~~l~~lViDEad~i~~~g~~~~l~~i~~ 207 (605)
+++.++++||.-..- ......++.+-+
T Consensus 406 ---iDip~v~~VI~~~~p----~s~~~y~Qr~GR 432 (563)
T 3i5x_A 406 ---MDFPNVHEVLQIGVP----SELANYIHRIGR 432 (563)
T ss_dssp ---CCCTTCCEEEEESCC----SSTTHHHHHHTT
T ss_pred ---CCcccCCEEEEECCC----CchhhhhhhcCc
Confidence 777888888865432 233444555443
No 150
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=90.58 E-value=0.51 Score=49.14 Aligned_cols=18 Identities=22% Similarity=0.381 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCchHHHHH
Q 007402 63 GKDVVARAKTGSGKTFAY 80 (605)
Q Consensus 63 gkdvlv~a~TGsGKT~a~ 80 (605)
.+.+|+.||+|+|||...
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 478999999999999743
No 151
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=90.41 E-value=0.54 Score=43.42 Aligned_cols=71 Identities=15% Similarity=0.153 Sum_probs=43.9
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHH----HHcCCCcEEEECCchHHHHHhcCCCC
Q 007402 99 APAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRA----ALAGPPDIVIATPGCMPKCLSTGVLQ 174 (605)
Q Consensus 99 ~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~----~l~~~~dIvV~TP~~l~~~l~~~~~~ 174 (605)
+.++||.|+|+.-+..+++.+... ++.+..++|+++...+.. ...+...|+|+| +.+..|
T Consensus 46 ~~k~lVF~~~~~~~~~l~~~L~~~--------g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT-----~~~~~G--- 109 (185)
T 2jgn_A 46 DSLTLVFVETKKGADSLEDFLYHE--------GYACTSIHGDRSQRDREEALHQFRSGKSPILVAT-----AVAARG--- 109 (185)
T ss_dssp CSCEEEEESCHHHHHHHHHHHHHT--------TCCEEEEC--------CHHHHHHHHTSSSEEEEE-----C--------
T ss_pred CCeEEEEECCHHHHHHHHHHHHHc--------CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEc-----ChhhcC---
Confidence 567999999999999888877653 578888898876544322 234678999999 233344
Q ss_pred CcccCCCceEEEE
Q 007402 175 SKSFSDSLKILVL 187 (605)
Q Consensus 175 ~~~~l~~l~~lVi 187 (605)
+++.++.++|.
T Consensus 110 --ldi~~~~~VI~ 120 (185)
T 2jgn_A 110 --LDISNVKHVIN 120 (185)
T ss_dssp ---CCCSBSEEEE
T ss_pred --CCcccCCEEEE
Confidence 66677777776
No 152
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=90.37 E-value=0.71 Score=49.04 Aligned_cols=37 Identities=14% Similarity=0.071 Sum_probs=23.8
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcC
Q 007402 64 KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVP 107 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvP 107 (605)
.=+++.|++|+|||. +++-++..+... .+..++++..
T Consensus 201 ~l~ii~G~pg~GKT~-lal~ia~~~a~~------~g~~vl~~sl 237 (444)
T 2q6t_A 201 SLNIIAARPAMGKTA-FALTIAQNAALK------EGVGVGIYSL 237 (444)
T ss_dssp CEEEEEECTTSCHHH-HHHHHHHHHHHT------TCCCEEEEES
T ss_pred cEEEEEeCCCCCHHH-HHHHHHHHHHHh------CCCeEEEEEC
Confidence 458899999999996 444454444431 1345777654
No 153
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=90.36 E-value=0.88 Score=46.76 Aligned_cols=17 Identities=18% Similarity=0.456 Sum_probs=14.9
Q ss_pred CcEEEEcCCCchHHHHH
Q 007402 64 KDVVARAKTGSGKTFAY 80 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a~ 80 (605)
+.+|+.+|+|+|||..+
T Consensus 85 ~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCEEEECSTTSCHHHHH
T ss_pred ceEEEECCCCCcHHHHH
Confidence 57999999999999843
No 154
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.35 E-value=0.14 Score=54.26 Aligned_cols=55 Identities=16% Similarity=0.251 Sum_probs=33.7
Q ss_pred hhcccCcccCCCCHHHHHHHHH---CCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHH
Q 007402 22 AEEEKSFEELGLDLRLVHALNK---KGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFA 79 (605)
Q Consensus 22 ~~~~~~f~~~~L~~~l~~al~~---~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a 79 (605)
..+..+|++.|=-..+.+.|.+ +-+.+|-.++...++ --+.+|+.||+|+|||+.
T Consensus 165 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~---~prGiLL~GPPGtGKT~l 222 (428)
T 4b4t_K 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGID---PPRGVLLYGPPGTGKTML 222 (428)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCC---CCCEEEEESCTTTTHHHH
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCceEEEECCCCCCHHHH
Confidence 3456799999744444444443 223344444433321 236799999999999974
No 155
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.21 E-value=0.21 Score=53.11 Aligned_cols=55 Identities=16% Similarity=0.280 Sum_probs=36.0
Q ss_pred hhcccCcccCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHH
Q 007402 22 AEEEKSFEELGLDLRLVHALNKK---GIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFA 79 (605)
Q Consensus 22 ~~~~~~f~~~~L~~~l~~al~~~---g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a 79 (605)
..+..+|++.+--+.+.+.|.+. -+.+|-.++.-.+ ---+.+|+.||+|+|||+.
T Consensus 202 e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi---~pprGILLyGPPGTGKTlL 259 (467)
T 4b4t_H 202 EKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGI---DPPKGILLYGPPGTGKTLC 259 (467)
T ss_dssp SSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCSEEEECSCTTSSHHHH
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCC---CCCCceEeeCCCCCcHHHH
Confidence 35568999998666667777653 2233433333222 1237899999999999973
No 156
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=90.13 E-value=1.9 Score=43.43 Aligned_cols=44 Identities=18% Similarity=0.085 Sum_probs=28.0
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHh----CCCcEEEEcCCCchHHHHH
Q 007402 25 EKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLIL----EGKDVVARAKTGSGKTFAY 80 (605)
Q Consensus 25 ~~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l----~gkdvlv~a~TGsGKT~a~ 80 (605)
..+|+++--.+.+++.+.. ++..+. ....+++.||+|+|||...
T Consensus 25 p~~~~~iiG~~~~~~~l~~------------~l~~~~~~~~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 25 PSNFDGYIGQESIKKNLNV------------FIAAAKKRNECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCSGGGCCSCHHHHHHHHH------------HHHHHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred CCCHHHhCChHHHHHHHHH------------HHHHHHhcCCCCCeEEEECcCCCCHHHHH
Confidence 3478887666666655542 122211 1257999999999999743
No 157
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=89.88 E-value=1.2 Score=48.03 Aligned_cols=54 Identities=15% Similarity=0.370 Sum_probs=30.2
Q ss_pred cccCcccCCCCHHHHHHHHHC-C--CCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHHH
Q 007402 24 EEKSFEELGLDLRLVHALNKK-G--IQKPTLIQQASIPLILEGKDVVARAKTGSGKTFAY 80 (605)
Q Consensus 24 ~~~~f~~~~L~~~l~~al~~~-g--~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~ 80 (605)
...+|++++=....++.|.++ . ...|..++... +-..+.+|+.+|+|+|||..+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g---~~~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIG---VKPPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCCEEEEECSTTSSHHHHH
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcC---CCCCCcEEEECcCCCCHHHHH
Confidence 456788886545555555442 1 11111111110 123367999999999999843
No 158
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=89.31 E-value=9.3 Score=41.64 Aligned_cols=78 Identities=10% Similarity=0.140 Sum_probs=59.0
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHH----cCCCcEEEECCchHHHHHhcCCC
Q 007402 98 LAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL----AGPPDIVIATPGCMPKCLSTGVL 173 (605)
Q Consensus 98 ~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l----~~~~dIvV~TP~~l~~~l~~~~~ 173 (605)
.+.++||.|+|+.-|..+++.+..... . ++.+..++|+++...+...+ .+..+|+|+| +.+..|
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~---~--~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT-----~~~~~G-- 354 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFK---K--DLPILEFHGKITQNKRTSLVKRFKKDESGILVCT-----DVGARG-- 354 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHT---T--TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEEC-----GGGTSS--
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhc---C--CCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEc-----chhhcC--
Confidence 366899999999999999998887642 2 57888899998876544433 3678999999 344454
Q ss_pred CCcccCCCceEEEEeCc
Q 007402 174 QSKSFSDSLKILVLDEA 190 (605)
Q Consensus 174 ~~~~~l~~l~~lViDEa 190 (605)
+++.++++||.-..
T Consensus 355 ---iDip~v~~VI~~~~ 368 (579)
T 3sqw_A 355 ---MDFPNVHEVLQIGV 368 (579)
T ss_dssp ---CCCTTCCEEEEESC
T ss_pred ---CCcccCCEEEEcCC
Confidence 77788888886654
No 159
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=89.25 E-value=0.44 Score=48.76 Aligned_cols=18 Identities=28% Similarity=0.372 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCchHHHHH
Q 007402 63 GKDVVARAKTGSGKTFAY 80 (605)
Q Consensus 63 gkdvlv~a~TGsGKT~a~ 80 (605)
+..+++.||+|+|||...
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999743
No 160
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=88.97 E-value=0.4 Score=49.38 Aligned_cols=16 Identities=25% Similarity=0.434 Sum_probs=14.2
Q ss_pred cEEEEcCCCchHHHHH
Q 007402 65 DVVARAKTGSGKTFAY 80 (605)
Q Consensus 65 dvlv~a~TGsGKT~a~ 80 (605)
.+++.||+|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999743
No 161
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=88.96 E-value=1.5 Score=45.36 Aligned_cols=72 Identities=18% Similarity=0.192 Sum_probs=56.2
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHH----cCCCcEEEECCchHHHHHhcCCC
Q 007402 98 LAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL----AGPPDIVIATPGCMPKCLSTGVL 173 (605)
Q Consensus 98 ~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l----~~~~dIvV~TP~~l~~~l~~~~~ 173 (605)
.+.++||.|+|++-+..+++.+... ++.+..++|+.+...+...+ .+..+|+|+| +.+..|
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~--------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~~~G-- 339 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE--------GYACTSIHGDRSQRDREEALHQFRSGKSPILVAT-----AVAARG-- 339 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT--------TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEEC-----HHHHTT--
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC--------CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEEC-----ChhhcC--
Confidence 3668999999999999988887653 67888999998876554433 3678999999 566666
Q ss_pred CCcccCCCceEEEE
Q 007402 174 QSKSFSDSLKILVL 187 (605)
Q Consensus 174 ~~~~~l~~l~~lVi 187 (605)
+++.++++||.
T Consensus 340 ---idip~v~~Vi~ 350 (417)
T 2i4i_A 340 ---LDISNVKHVIN 350 (417)
T ss_dssp ---SCCCCEEEEEE
T ss_pred ---CCcccCCEEEE
Confidence 67778888775
No 162
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=88.91 E-value=2.7 Score=42.78 Aligned_cols=39 Identities=21% Similarity=0.275 Sum_probs=22.8
Q ss_pred CCceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEe
Q 007402 180 DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMS 219 (605)
Q Consensus 180 ~~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~S 219 (605)
..-.+|||||+|.+.... ...+..+++..|....+|+.|
T Consensus 118 ~~~~vliiDe~~~l~~~~-~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRHS-FNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp SSSEEEEEECGGGSCHHH-HHHHHHHHHSCCSSEEEEEEE
T ss_pred CCeEEEEEECcchhcHHH-HHHHHHHHhcCCCceEEEEEe
Confidence 446799999999875332 233444444444444444443
No 163
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=88.79 E-value=0.68 Score=44.06 Aligned_cols=40 Identities=20% Similarity=0.132 Sum_probs=27.1
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcH
Q 007402 62 EGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTR 109 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtr 109 (605)
.|.=.++.++.|||||.+.+ ..+.+.... +.+++|+.|..
T Consensus 27 ~G~I~vitG~M~sGKTT~Ll-r~~~r~~~~-------g~kvli~kp~~ 66 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELI-RRLRRGIYA-------KQKVVVFKPAI 66 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHH-HHHHHHHHT-------TCCEEEEEEC-
T ss_pred CceEEEEECCCCCCHHHHHH-HHHHHHHHc-------CCceEEEEecc
Confidence 35557899999999996543 344444432 56689998854
No 164
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=88.61 E-value=0.71 Score=46.37 Aligned_cols=71 Identities=15% Similarity=0.250 Sum_probs=52.9
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHH----cCCCcEEEECCchHHHHHhcCCCC
Q 007402 99 APAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL----AGPPDIVIATPGCMPKCLSTGVLQ 174 (605)
Q Consensus 99 ~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l----~~~~dIvV~TP~~l~~~l~~~~~~ 174 (605)
+.++||.|+|++-+..+++.+... ++.+..++|+.+...+...+ .+..+|+|+| +.+..|
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~--------g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT-----~va~~G--- 91 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL--------GHPAQALHGDMSQGERERVMGAFRQGEVRVLVAT-----DVAARG--- 91 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT--------TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEEC-----STTTCS---
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC--------CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEe-----chhhcC---
Confidence 557999999999998888777543 67888999998876554443 3678999999 333444
Q ss_pred CcccCCCceEEEE
Q 007402 175 SKSFSDSLKILVL 187 (605)
Q Consensus 175 ~~~~l~~l~~lVi 187 (605)
+++..+.+||.
T Consensus 92 --idi~~v~~VI~ 102 (300)
T 3i32_A 92 --LDIPQVDLVVH 102 (300)
T ss_dssp --TTCCCCSEEEE
T ss_pred --ccccceeEEEE
Confidence 67777887774
No 165
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.37 E-value=1.1 Score=45.41 Aligned_cols=39 Identities=23% Similarity=0.293 Sum_probs=25.3
Q ss_pred CceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEee
Q 007402 181 SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSA 220 (605)
Q Consensus 181 ~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SA 220 (605)
...+|+|||+|.+... ....+..++...+....+|+++.
T Consensus 133 ~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~~ 171 (353)
T 1sxj_D 133 PYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLICN 171 (353)
T ss_dssp SCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred CceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEeC
Confidence 4579999999987543 23445555666665666666543
No 166
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=88.30 E-value=1.6 Score=52.17 Aligned_cols=68 Identities=16% Similarity=0.167 Sum_probs=55.8
Q ss_pred HHHHhhcCCCeEEEEecchhHHHHHHHHHHH----cCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 007402 275 TLLKLELVQKKALIFTNTIDMAFRLKLFLEK----FGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 342 (605)
Q Consensus 275 ~llk~~~~~~k~IIFv~s~~~~~~L~~~L~~----~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~ 342 (605)
..+.....+.+++|.|++...+......+.+ +++.+..+++..+...+..+++.+..|.++|+|+|..
T Consensus 644 aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ 715 (1151)
T 2eyq_A 644 AAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHK 715 (1151)
T ss_dssp HHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTH
T ss_pred HHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 3333334466999999999988877776653 3688999999999999999999999999999999964
No 167
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=87.86 E-value=7.7 Score=39.30 Aligned_cols=75 Identities=15% Similarity=0.278 Sum_probs=57.3
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHH----cCCCcEEEECCchHHHHHhcCCCC
Q 007402 99 APAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL----AGPPDIVIATPGCMPKCLSTGVLQ 174 (605)
Q Consensus 99 ~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l----~~~~dIvV~TP~~l~~~l~~~~~~ 174 (605)
+.++||.|++++-+..+++.+... ++.+..++|+.+...+...+ .+..+|+|+| +.+..|
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~~--------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~~~G--- 306 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKSE--------GHEVSILHGDLQTQERDRLIDDFREGRSKVLITT-----NVLARG--- 306 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT--------TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEEC-----GGGSSS---
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhc--------CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEEC-----ChhhcC---
Confidence 568999999999999988887754 57788899998876654443 3678999999 344444
Q ss_pred CcccCCCceEEEEeCcc
Q 007402 175 SKSFSDSLKILVLDEAD 191 (605)
Q Consensus 175 ~~~~l~~l~~lViDEad 191 (605)
+++.++++||.-...
T Consensus 307 --idip~~~~Vi~~~~p 321 (395)
T 3pey_A 307 --IDIPTVSMVVNYDLP 321 (395)
T ss_dssp --CCCTTEEEEEESSCC
T ss_pred --CCcccCCEEEEcCCC
Confidence 778889998875554
No 168
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=87.64 E-value=5.6 Score=42.04 Aligned_cols=53 Identities=17% Similarity=0.191 Sum_probs=29.5
Q ss_pred CceEEEEeCcchhccC-CcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHh
Q 007402 181 SLKILVLDEADLLLSY-GYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLI 233 (605)
Q Consensus 181 ~l~~lViDEad~i~~~-g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~ 233 (605)
..+++|||.+=+.... .....+..+.....+..-++.++||...+.......|
T Consensus 182 ~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f 235 (443)
T 3dm5_A 182 GVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAF 235 (443)
T ss_dssp TCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHH
T ss_pred CCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHH
Confidence 3667888887443211 1234455555555455556777888765554444444
No 169
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=87.54 E-value=1.5 Score=52.14 Aligned_cols=62 Identities=13% Similarity=0.125 Sum_probs=56.0
Q ss_pred cCCCeEEEEecchhHHHHHHHHHHH---cCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 007402 281 LVQKKALIFTNTIDMAFRLKLFLEK---FGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 342 (605)
Q Consensus 281 ~~~~k~IIFv~s~~~~~~L~~~L~~---~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~ 342 (605)
..+.++||.+++++.|..+...|.. .++.++.++|+++...|...++.+..|..+|+|+|..
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~ 183 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQ 183 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHH
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHH
Confidence 3467899999999999999999998 4679999999999988889999999999999999974
No 170
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=87.53 E-value=2.3 Score=42.21 Aligned_cols=39 Identities=28% Similarity=0.388 Sum_probs=25.0
Q ss_pred CCceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEe
Q 007402 180 DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMS 219 (605)
Q Consensus 180 ~~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~S 219 (605)
..-.++||||+|.+... ....+..++...+....+|+.+
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 35679999999997532 2344555556556666666544
No 171
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=87.45 E-value=1.9 Score=46.77 Aligned_cols=60 Identities=15% Similarity=0.230 Sum_probs=56.4
Q ss_pred CCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 007402 283 QKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 342 (605)
Q Consensus 283 ~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~ 342 (605)
.+.+||.++++..+......|..+|+.+..+|+..+...+..+...+..|.++|+++|..
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe 124 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPE 124 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 588999999999999999999999999999999999999999999999999999999974
No 172
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=87.33 E-value=1.2 Score=47.91 Aligned_cols=51 Identities=12% Similarity=0.155 Sum_probs=38.0
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHH
Q 007402 62 EGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALI 123 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~ 123 (605)
.|..+.+.+-||||||++..- +... .+..+|||+|+..+|.|+++.+..+.
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~-----l~~~------~~~p~lvv~~~~~~A~~l~~~l~~~~ 63 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAE-----IAER------HAGPVVLIAPDMQNALRLHDEISQFT 63 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHH-----HHHH------SSSCEEEEESSHHHHHHHHHHHHHTC
T ss_pred CCCeEEEeCCCchHHHHHHHH-----HHHH------hCCCEEEEeCCHHHHHHHHHHHHhhC
Confidence 456789999999999984322 2221 12348999999999999999998763
No 173
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=86.98 E-value=1.2 Score=47.27 Aligned_cols=51 Identities=16% Similarity=0.184 Sum_probs=29.5
Q ss_pred ccCcccCCCCHHHHHHHHHCC---CCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHH
Q 007402 25 EKSFEELGLDLRLVHALNKKG---IQKPTLIQQASIPLILEGKDVVARAKTGSGKTFA 79 (605)
Q Consensus 25 ~~~f~~~~L~~~l~~al~~~g---~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a 79 (605)
..+|++++-...+.+.|...- ...|..++. .....+.+|+.||+|+|||..
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~----~~~~~~~vLL~GppGtGKT~l 183 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG----KRTPWRGILLFGPPGTGKSYL 183 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG----GGCCCSEEEEECSTTSSHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc----cCCCCceEEEECCCCCCHHHH
Confidence 467888865556666665421 011111110 011236799999999999974
No 174
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=86.91 E-value=1.3 Score=47.24 Aligned_cols=38 Identities=13% Similarity=0.172 Sum_probs=23.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcC
Q 007402 63 GKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVP 107 (605)
Q Consensus 63 gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvP 107 (605)
|.-+++.|++|+|||.. ++-++..+... .+..++++..
T Consensus 203 G~liiI~G~pG~GKTtl-~l~ia~~~~~~------~g~~Vl~~s~ 240 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAF-ALNIAQNVATK------TNENVAIFSL 240 (454)
T ss_dssp TCEEEEECCTTSCHHHH-HHHHHHHHHHH------SSCCEEEEES
T ss_pred CCEEEEECCCCCCHHHH-HHHHHHHHHHh------CCCcEEEEEC
Confidence 45688999999999964 44444444321 1335777663
No 175
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=86.87 E-value=1.1 Score=46.35 Aligned_cols=17 Identities=24% Similarity=0.302 Sum_probs=14.0
Q ss_pred CcEEE--EcCCCchHHHHH
Q 007402 64 KDVVA--RAKTGSGKTFAY 80 (605)
Q Consensus 64 kdvlv--~a~TGsGKT~a~ 80 (605)
..+++ .|++|+|||...
T Consensus 51 ~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp EEEEEECTTCCSSSHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHH
Confidence 45888 899999999743
No 176
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=86.64 E-value=0.77 Score=43.27 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=15.6
Q ss_pred CCCcEEEEcCCCchHHHHH
Q 007402 62 EGKDVVARAKTGSGKTFAY 80 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a~ 80 (605)
.|.-+++.+|+|+|||...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFS 40 (235)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 4567889999999999643
No 177
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.63 E-value=3.6 Score=41.59 Aligned_cols=39 Identities=18% Similarity=0.391 Sum_probs=26.3
Q ss_pred CCceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEe
Q 007402 180 DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMS 219 (605)
Q Consensus 180 ~~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~S 219 (605)
...+++||||+|.+... -.+.+..+++..+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence 34789999999987543 2445666666666666666554
No 178
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=86.47 E-value=2 Score=47.45 Aligned_cols=60 Identities=17% Similarity=0.265 Sum_probs=55.4
Q ss_pred CCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHH--HcCCCcEEEEcCC
Q 007402 283 QKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF--NAGLFDYLIATDD 342 (605)
Q Consensus 283 ~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F--~~g~~~iLIaTd~ 342 (605)
.+.+||.++++..+......|.++|+.+..++|+++...+..+...+ ..+.++|+++|..
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe 145 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPE 145 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChh
Confidence 67999999999999999999999999999999999999998888888 5788999999984
No 179
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=86.30 E-value=2.1 Score=43.96 Aligned_cols=71 Identities=8% Similarity=0.175 Sum_probs=53.8
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHH----cCCCcEEEECCchHHHHHhcCCCC
Q 007402 99 APAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL----AGPPDIVIATPGCMPKCLSTGVLQ 174 (605)
Q Consensus 99 ~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l----~~~~dIvV~TP~~l~~~l~~~~~~ 174 (605)
+.++||.|++++-+..+++.+... ++.+..++|+.+...+...+ .+...|+|+|. .+..|
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~--------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~~G--- 321 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDL--------GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----LLTRG--- 321 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHH--------TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----CSSSS---
T ss_pred CCcEEEEEecHHHHHHHHHHHHhc--------CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----ccccC---
Confidence 458999999999999999888765 57788899998876554433 36789999992 33333
Q ss_pred CcccCCCceEEEE
Q 007402 175 SKSFSDSLKILVL 187 (605)
Q Consensus 175 ~~~~l~~l~~lVi 187 (605)
+++..++++|.
T Consensus 322 --idip~~~~Vi~ 332 (400)
T 1s2m_A 322 --IDIQAVNVVIN 332 (400)
T ss_dssp --CCCTTEEEEEE
T ss_pred --CCccCCCEEEE
Confidence 77778888775
No 180
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=86.28 E-value=1.2 Score=44.15 Aligned_cols=17 Identities=29% Similarity=0.194 Sum_probs=14.5
Q ss_pred CcEEEEcCCCchHHHHH
Q 007402 64 KDVVARAKTGSGKTFAY 80 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a~ 80 (605)
..+++.||+|+|||..+
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 36999999999999753
No 181
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=86.08 E-value=1.7 Score=44.79 Aligned_cols=71 Identities=15% Similarity=0.254 Sum_probs=54.9
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHH----cCCCcEEEECCchHHHHHhcCCCC
Q 007402 99 APAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL----AGPPDIVIATPGCMPKCLSTGVLQ 174 (605)
Q Consensus 99 ~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l----~~~~dIvV~TP~~l~~~l~~~~~~ 174 (605)
+.++||.|+++.-+..+++.+... ++.+..++|+.+...+...+ .+..+|+|+| +.+..|
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~--------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~~~G--- 329 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE--------GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTT-----NVCARG--- 329 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT--------TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-----GGGTSS---
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC--------CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEc-----CccccC---
Confidence 457999999999999998888764 57788899998876654443 3678999999 344455
Q ss_pred CcccCCCceEEEE
Q 007402 175 SKSFSDSLKILVL 187 (605)
Q Consensus 175 ~~~~l~~l~~lVi 187 (605)
+++.++++||.
T Consensus 330 --idip~~~~Vi~ 340 (412)
T 3fht_A 330 --IDVEQVSVVIN 340 (412)
T ss_dssp --CCCTTEEEEEE
T ss_pred --CCccCCCEEEE
Confidence 77778888775
No 182
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=86.05 E-value=0.99 Score=48.01 Aligned_cols=16 Identities=25% Similarity=0.418 Sum_probs=14.1
Q ss_pred CcEEEEcCCCchHHHH
Q 007402 64 KDVVARAKTGSGKTFA 79 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a 79 (605)
..+|+.||+|+|||..
T Consensus 51 ~~vLL~GppGtGKTtl 66 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTL 66 (447)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred cEEEEECCCCCcHHHH
Confidence 3699999999999974
No 183
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=85.12 E-value=6.6 Score=43.80 Aligned_cols=77 Identities=17% Similarity=0.218 Sum_probs=59.1
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHH----cCCCcEEEECCchHHHHHhcCCCC
Q 007402 99 APAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL----AGPPDIVIATPGCMPKCLSTGVLQ 174 (605)
Q Consensus 99 ~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l----~~~~dIvV~TP~~l~~~l~~~~~~ 174 (605)
+.++||.|+|+.-+..+++.+... ++.+..++|+.+...+...+ .+..+|+|||. .+..|
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~--------gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~l~~G--- 508 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEI--------GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LLREG--- 508 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT--------TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----CCSTT---
T ss_pred CCeEEEEECCHHHHHHHHHHHHhc--------CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----hhhCC---
Confidence 568999999999999888877764 57778888888765554442 36789999992 33444
Q ss_pred CcccCCCceEEEEeCcchh
Q 007402 175 SKSFSDSLKILVLDEADLL 193 (605)
Q Consensus 175 ~~~~l~~l~~lViDEad~i 193 (605)
+++.+++++|+-++|..
T Consensus 509 --lDip~v~lVi~~d~d~~ 525 (661)
T 2d7d_A 509 --LDIPEVSLVAILDADKE 525 (661)
T ss_dssp --CCCTTEEEEEETTTTCC
T ss_pred --cccCCCCEEEEeCcccc
Confidence 77888999999999864
No 184
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=84.82 E-value=2 Score=43.93 Aligned_cols=74 Identities=12% Similarity=0.191 Sum_probs=55.4
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHH----cCCCcEEEECCchHHHHHhcCCCC
Q 007402 99 APAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL----AGPPDIVIATPGCMPKCLSTGVLQ 174 (605)
Q Consensus 99 ~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l----~~~~dIvV~TP~~l~~~l~~~~~~ 174 (605)
+.++||.|++++-+..+++.+... ++.+..++|+.+...+...+ .+...|+|+|. .+..|
T Consensus 250 ~~~~lvf~~~~~~~~~l~~~L~~~--------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~G--- 313 (391)
T 1xti_A 250 FNQVVIFVKSVQRCIALAQLLVEQ--------NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----LFGRG--- 313 (391)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHT--------TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESC-----CCSSC---
T ss_pred CCcEEEEeCcHHHHHHHHHHHHhC--------CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECC-----hhhcC---
Confidence 568999999999999998887654 57788899998876554433 35789999992 23333
Q ss_pred CcccCCCceEEEEeCc
Q 007402 175 SKSFSDSLKILVLDEA 190 (605)
Q Consensus 175 ~~~~l~~l~~lViDEa 190 (605)
+++..++++|.-..
T Consensus 314 --idi~~~~~Vi~~~~ 327 (391)
T 1xti_A 314 --MDIERVNIAFNYDM 327 (391)
T ss_dssp --BCCTTEEEEEESSC
T ss_pred --CCcccCCEEEEeCC
Confidence 77788888887544
No 185
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=85.07 E-value=0.18 Score=45.88 Aligned_cols=71 Identities=17% Similarity=0.207 Sum_probs=49.6
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHH----cCCCcEEEECCchHHHHHhcCCCC
Q 007402 99 APAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL----AGPPDIVIATPGCMPKCLSTGVLQ 174 (605)
Q Consensus 99 ~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l----~~~~dIvV~TP~~l~~~l~~~~~~ 174 (605)
+.++||.|+++.-+..+++.+... ++.+..++|+++.......+ .+...|+|+| +.+..|
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~--------~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT-----~~~~~G--- 93 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA--------GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT-----DVAARG--- 93 (170)
Confidence 467999999999999988887764 56777788877655443333 2467899999 344444
Q ss_pred CcccCCCceEEEE
Q 007402 175 SKSFSDSLKILVL 187 (605)
Q Consensus 175 ~~~~l~~l~~lVi 187 (605)
+++..++++|.
T Consensus 94 --id~~~~~~Vi~ 104 (170)
T 2yjt_D 94 --IDIPDVSHVFN 104 (170)
Confidence 55666666665
No 186
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=84.71 E-value=1.8 Score=43.64 Aligned_cols=72 Identities=18% Similarity=0.186 Sum_probs=53.5
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHH----cCCCcEEEECCchHHHHHhcCCCC
Q 007402 99 APAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL----AGPPDIVIATPGCMPKCLSTGVLQ 174 (605)
Q Consensus 99 ~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l----~~~~dIvV~TP~~l~~~l~~~~~~ 174 (605)
+.++||.|++++-+..+++.+... ++.+..++|+.+...+...+ .+..+|+|+|. .+..|
T Consensus 238 ~~~~lvf~~~~~~~~~l~~~L~~~--------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~G--- 301 (367)
T 1hv8_A 238 EFYGLVFCKTKRDTKELASMLRDI--------GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMSRG--- 301 (367)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHT--------TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THHHH---
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc--------CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhcC---
Confidence 567999999999999988887764 57788899998876554433 36789999993 34444
Q ss_pred CcccCCCceEEEEe
Q 007402 175 SKSFSDSLKILVLD 188 (605)
Q Consensus 175 ~~~~l~~l~~lViD 188 (605)
.++.+++++|.-
T Consensus 302 --id~~~~~~Vi~~ 313 (367)
T 1hv8_A 302 --IDVNDLNCVINY 313 (367)
T ss_dssp --CCCSCCSEEEES
T ss_pred --CCcccCCEEEEe
Confidence 566677777753
No 187
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=84.08 E-value=5.4 Score=45.49 Aligned_cols=16 Identities=25% Similarity=0.549 Sum_probs=14.5
Q ss_pred CcEEEEcCCCchHHHH
Q 007402 64 KDVVARAKTGSGKTFA 79 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a 79 (605)
+.+|+.+|+|+|||+.
T Consensus 239 ~GILL~GPPGTGKT~L 254 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLI 254 (806)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 6799999999999973
No 188
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=83.61 E-value=2.5 Score=43.70 Aligned_cols=71 Identities=13% Similarity=0.289 Sum_probs=53.9
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHH----cCCCcEEEECCchHHHHHhcCCCC
Q 007402 99 APAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL----AGPPDIVIATPGCMPKCLSTGVLQ 174 (605)
Q Consensus 99 ~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l----~~~~dIvV~TP~~l~~~l~~~~~~ 174 (605)
..++||.|+|++-+..+++.+... ++.+..++|+.+...+...+ .+...|+|+| +.+..|
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~--------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~~~G--- 339 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMREA--------NFTVSSMHGDMPQKERESIMKEFRSGASRVLIST-----DVWARG--- 339 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT--------TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEEC-----GGGSSS---
T ss_pred CCcEEEEEcCHHHHHHHHHHHHhC--------CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEC-----ChhhCc---
Confidence 347999999999999888887654 57788899998876554433 3678999999 344444
Q ss_pred CcccCCCceEEEE
Q 007402 175 SKSFSDSLKILVL 187 (605)
Q Consensus 175 ~~~~l~~l~~lVi 187 (605)
+++.+++++|.
T Consensus 340 --idi~~v~~Vi~ 350 (410)
T 2j0s_A 340 --LDVPQVSLIIN 350 (410)
T ss_dssp --CCCTTEEEEEE
T ss_pred --CCcccCCEEEE
Confidence 77788888875
No 189
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=83.02 E-value=2.6 Score=44.29 Aligned_cols=69 Identities=20% Similarity=0.211 Sum_probs=53.3
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHH----cCCCcEEEECCchHHHHHhcCCCCCc
Q 007402 101 AALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL----AGPPDIVIATPGCMPKCLSTGVLQSK 176 (605)
Q Consensus 101 ~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l----~~~~dIvV~TP~~l~~~l~~~~~~~~ 176 (605)
.+||.|+|+.-|..+++.+... ++.+..++|+.+...+...+ .+...|+||| +.+..|
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~--------~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~v~~rG----- 363 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK--------EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIAT-----SVASRG----- 363 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT--------TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEEC-----GGGTSS-----
T ss_pred CEEEEEeCcHHHHHHHHHHHhC--------CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEc-----hhhhCC-----
Confidence 3999999999999988877653 67888999998876554443 3678999999 344455
Q ss_pred ccCCCceEEEE
Q 007402 177 SFSDSLKILVL 187 (605)
Q Consensus 177 ~~l~~l~~lVi 187 (605)
+++.++++||.
T Consensus 364 lDi~~v~~VI~ 374 (434)
T 2db3_A 364 LDIKNIKHVIN 374 (434)
T ss_dssp CCCTTCCEEEE
T ss_pred CCcccCCEEEE
Confidence 77888888776
No 190
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=82.89 E-value=3.9 Score=40.97 Aligned_cols=39 Identities=8% Similarity=0.095 Sum_probs=23.6
Q ss_pred CCceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEe
Q 007402 180 DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMS 219 (605)
Q Consensus 180 ~~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~S 219 (605)
...+++||||||.|.... .+.+...++.-|...-+|+.+
T Consensus 81 ~~~kvviIdead~lt~~a-~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQA-ANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSEEEEETTGGGBCHHH-HHHTHHHHHSCCTTEEEEEEE
T ss_pred CCceEEEeccHHHhCHHH-HHHHHHHHhCCCCCeEEEEEE
Confidence 457899999999986432 233444445444455555544
No 191
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=82.81 E-value=4.9 Score=44.89 Aligned_cols=77 Identities=18% Similarity=0.176 Sum_probs=58.4
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHH----HcCCCcEEEECCchHHHHHhcCCCC
Q 007402 99 APAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAA----LAGPPDIVIATPGCMPKCLSTGVLQ 174 (605)
Q Consensus 99 ~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~----l~~~~dIvV~TP~~l~~~l~~~~~~ 174 (605)
+.++||.|+|+.-+..+++.+... ++.+..++|+.+...+... ..+..+|+||| +.+..|
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~--------gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT-----~~l~~G--- 502 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEH--------GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGI-----NLLREG--- 502 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT--------TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEES-----CCCCTT---
T ss_pred CCEEEEEECCHHHHHHHHHHHHhc--------CCCceeecCCCCHHHHHHHHHHhhcCCceEEEcc-----ChhhcC---
Confidence 568999999999999888877664 5777888888876655443 23678999999 233344
Q ss_pred CcccCCCceEEEEeCcchh
Q 007402 175 SKSFSDSLKILVLDEADLL 193 (605)
Q Consensus 175 ~~~~l~~l~~lViDEad~i 193 (605)
+++..++++|+=++|..
T Consensus 503 --lDip~v~lVI~~d~d~~ 519 (664)
T 1c4o_A 503 --LDIPEVSLVAILDADKE 519 (664)
T ss_dssp --CCCTTEEEEEETTTTSC
T ss_pred --ccCCCCCEEEEeCCccc
Confidence 77788999999888763
No 192
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.61 E-value=0.34 Score=51.29 Aligned_cols=56 Identities=14% Similarity=0.293 Sum_probs=39.4
Q ss_pred hhhcccCcccCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHH
Q 007402 21 EAEEEKSFEELGLDLRLVHALNKK---GIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFA 79 (605)
Q Consensus 21 ~~~~~~~f~~~~L~~~l~~al~~~---g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a 79 (605)
...+..+|++.+--+...+.|.+. -+.+|..++...++ --+.+|+.||+|+|||+.
T Consensus 173 ~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~---~prGvLLyGPPGTGKTll 231 (434)
T 4b4t_M 173 DEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR---APKGALMYGPPGTGKTLL 231 (434)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC---CCCEEEEESCTTSSHHHH
T ss_pred CCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeeEEECcCCCCHHHH
Confidence 345678999998777777777652 33456555554432 237899999999999974
No 193
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=82.53 E-value=1.3 Score=46.88 Aligned_cols=69 Identities=13% Similarity=0.145 Sum_probs=46.9
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCccc
Q 007402 99 APAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSF 178 (605)
Q Consensus 99 ~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~ 178 (605)
+.++||+|||++-|..+++.+... ++++..++|............+..+|+||| +.+..| ++
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~--------~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT-----~v~e~G-----iD 238 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA--------GKSVVVLNRKTFEREYPTIKQKKPDFILAT-----DIAEMG-----AN 238 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT--------TCCEEECCSSSCC--------CCCSEEEES-----SSTTCC-----TT
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc--------CCCEEEecchhHHHHHhhhcCCCceEEEEC-----Chhhee-----ec
Confidence 467999999999999999887764 577888888655445555555779999999 334444 66
Q ss_pred CCCceEEE
Q 007402 179 SDSLKILV 186 (605)
Q Consensus 179 l~~l~~lV 186 (605)
+. +++||
T Consensus 239 ip-v~~VI 245 (440)
T 1yks_A 239 LC-VERVL 245 (440)
T ss_dssp CC-CSEEE
T ss_pred cC-ceEEE
Confidence 66 77766
No 194
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=82.33 E-value=6.2 Score=38.96 Aligned_cols=38 Identities=21% Similarity=0.309 Sum_probs=24.3
Q ss_pred CceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEe
Q 007402 181 SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMS 219 (605)
Q Consensus 181 ~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~S 219 (605)
.-.+|||||+|.+.... ...+..++...+....+|+.|
T Consensus 107 ~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHHH-HHHHHHHHhccCCCceEEEEe
Confidence 36799999999975432 233445555555666666655
No 195
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=82.08 E-value=1.8 Score=47.30 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=15.6
Q ss_pred CCCcEEEEcCCCchHHHH
Q 007402 62 EGKDVVARAKTGSGKTFA 79 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a 79 (605)
.|..+++.+|+|+|||..
T Consensus 107 ~g~~vll~Gp~GtGKTtl 124 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSL 124 (543)
T ss_dssp CSCEEEEESSSSSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 367899999999999973
No 196
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=81.89 E-value=4.6 Score=37.63 Aligned_cols=56 Identities=20% Similarity=0.304 Sum_probs=46.1
Q ss_pred CeEEEEecchhHHHHHHHHHHHc-----CCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 007402 284 KKALIFTNTIDMAFRLKLFLEKF-----GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 342 (605)
Q Consensus 284 ~k~IIFv~s~~~~~~L~~~L~~~-----gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~ 342 (605)
.++||.|+++..+..+...++.+ ++.++.++|+.+..... +.+..+..+|+|+|..
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~~~~~~i~v~T~~ 143 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE---EVLKKNCPHIVVGTPG 143 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHH---HHHHHSCCSEEEECHH
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHH---HHHhcCCCCEEEeCHH
Confidence 48999999999999988888776 78999999999876554 4456677899999965
No 197
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=81.56 E-value=1 Score=39.42 Aligned_cols=20 Identities=15% Similarity=0.034 Sum_probs=16.8
Q ss_pred HhCCCcEEEEcCCCchHHHH
Q 007402 60 ILEGKDVVARAKTGSGKTFA 79 (605)
Q Consensus 60 ~l~gkdvlv~a~TGsGKT~a 79 (605)
+..+..+++.+++|+|||..
T Consensus 24 ~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHH
T ss_pred hCCCCcEEEECCCCccHHHH
Confidence 44567899999999999973
No 198
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=81.33 E-value=1.1 Score=39.37 Aligned_cols=21 Identities=14% Similarity=0.064 Sum_probs=17.3
Q ss_pred HhCCCcEEEEcCCCchHHHHH
Q 007402 60 ILEGKDVVARAKTGSGKTFAY 80 (605)
Q Consensus 60 ~l~gkdvlv~a~TGsGKT~a~ 80 (605)
+..+..+++.+++|+|||..+
T Consensus 21 a~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHHH
T ss_pred hCCCCCEEEECCCCCCHHHHH
Confidence 345678999999999999843
No 199
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=80.52 E-value=1.4 Score=45.06 Aligned_cols=49 Identities=18% Similarity=0.192 Sum_probs=29.1
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHH
Q 007402 62 EGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEV 119 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~ 119 (605)
.|.=+++.|++|+|||.. ++-++..+.. .+..++|+..- .-..|+...+
T Consensus 45 ~G~LiiIaG~pG~GKTt~-al~ia~~~a~-------~g~~Vl~fSlE-ms~~ql~~Rl 93 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSL-MMNMVLSALN-------DDRGVAVFSLE-MSAEQLALRA 93 (338)
T ss_dssp TTCEEEEEECTTSCHHHH-HHHHHHHHHH-------TTCEEEEEESS-SCHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHH-HHHHHHHHHH-------cCCeEEEEeCC-CCHHHHHHHH
Confidence 345689999999999964 4444444433 14557777642 2234444444
No 200
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=79.73 E-value=35 Score=33.68 Aligned_cols=37 Identities=22% Similarity=0.190 Sum_probs=24.2
Q ss_pred ceEEEEeCcchhcc---CCcHHHHHHHHhhCCCCceEEEEe
Q 007402 182 LKILVLDEADLLLS---YGYEDDLKALSAVIPRGCQCLLMS 219 (605)
Q Consensus 182 l~~lViDEad~i~~---~g~~~~l~~i~~~lp~~~q~il~S 219 (605)
--+|||||+|.+.. ..+...+..+....+ ...+++.+
T Consensus 138 ~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~g 177 (357)
T 2fna_A 138 NVIIVLDEAQELVKLRGVNLLPALAYAYDNLK-RIKFIMSG 177 (357)
T ss_dssp CEEEEEETGGGGGGCTTCCCHHHHHHHHHHCT-TEEEEEEE
T ss_pred CeEEEEECHHHhhccCchhHHHHHHHHHHcCC-CeEEEEEc
Confidence 34899999999874 356667777766543 34454443
No 201
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=79.19 E-value=0.31 Score=46.78 Aligned_cols=45 Identities=13% Similarity=0.121 Sum_probs=27.5
Q ss_pred CCceEEEEeCcchhcc-----CCcHHHHHHHHhhCCCCceEEEEeeecCh
Q 007402 180 DSLKILVLDEADLLLS-----YGYEDDLKALSAVIPRGCQCLLMSATSSS 224 (605)
Q Consensus 180 ~~l~~lViDEad~i~~-----~g~~~~l~~i~~~lp~~~q~il~SATl~~ 224 (605)
.+.+++|+||.-.+++ ......+..++..+...-.+++++.-...
T Consensus 134 ~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~ 183 (251)
T 2ehv_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPD 183 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC-
T ss_pred hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 3567999999988775 33445566666655432335566555443
No 202
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=78.86 E-value=2.9 Score=48.21 Aligned_cols=16 Identities=31% Similarity=0.368 Sum_probs=14.3
Q ss_pred CcEEEEcCCCchHHHH
Q 007402 64 KDVVARAKTGSGKTFA 79 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a 79 (605)
.++++.||+|+|||..
T Consensus 192 ~~vlL~G~pG~GKT~l 207 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAI 207 (854)
T ss_dssp CCCEEEECTTSCHHHH
T ss_pred CceEEEcCCCCCHHHH
Confidence 4799999999999974
No 203
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=78.50 E-value=6.7 Score=40.75 Aligned_cols=95 Identities=15% Similarity=0.213 Sum_probs=60.1
Q ss_pred CCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeC--------CCCH
Q 007402 72 TGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTS--------SMPA 143 (605)
Q Consensus 72 TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~--------~~~~ 143 (605)
..++|..+ +.-++...... ..+.++||.|++++-+..+++.+... ++.+..++| +++.
T Consensus 340 ~~~~k~~~-l~~~l~~~~~~-----~~~~k~lVF~~~~~~~~~l~~~L~~~--------~~~~~~~~g~~~~~~~~~~~~ 405 (494)
T 1wp9_A 340 LDHPKMDK-LKEIIREQLQR-----KQNSKIIVFTNYRETAKKIVNELVKD--------GIKAKRFVGQASKENDRGLSQ 405 (494)
T ss_dssp CSCHHHHH-HHHHHHHHHHH-----CTTCCEEEECSCHHHHHHHHHHHHHT--------TCCEEEECCSSCC-------C
T ss_pred CCChHHHH-HHHHHHHHhcc-----CCCCeEEEEEccHHHHHHHHHHHHHc--------CCCcEEEeccccccccccCCH
Confidence 45666543 34455544321 23567999999999999888887764 577888888 5443
Q ss_pred HHHHH----HHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCc
Q 007402 144 SDLRA----ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEA 190 (605)
Q Consensus 144 ~~~~~----~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEa 190 (605)
..+.. ...+...|+|+| +.+..| +++..+++||+-+.
T Consensus 406 ~~r~~~~~~F~~~~~~vLv~T-----~~~~~G-----ldl~~~~~Vi~~d~ 446 (494)
T 1wp9_A 406 REQKLILDEFARGEFNVLVAT-----SVGEEG-----LDVPEVDLVVFYEP 446 (494)
T ss_dssp CHHHHHHHHHHHTSCSEEEEC-----GGGGGG-----GGSTTCCEEEESSC
T ss_pred HHHHHHHHHHhcCCceEEEEC-----CccccC-----CCchhCCEEEEeCC
Confidence 33322 223668999999 234444 67777888886544
No 204
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=78.06 E-value=2.9 Score=43.99 Aligned_cols=60 Identities=17% Similarity=0.094 Sum_probs=45.4
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcC
Q 007402 99 APAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTG 171 (605)
Q Consensus 99 ~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~ 171 (605)
+.++||+|||++-++.+++.+... ++++..++|............+..+|+||| +.+..|
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~--------~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT-----~v~e~G 230 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA--------GKKVLYLNRKTFESEYPKCKSEKWDFVITT-----DISEMG 230 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT--------TCCEEEESTTTHHHHTTHHHHSCCSEEEEC-----GGGGTS
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc--------CCeEEEeCCccHHHHHHhhcCCCCeEEEEC-----chHHcC
Confidence 457999999999999988887764 567888888754444444455789999999 455555
No 205
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=77.23 E-value=6.2 Score=44.68 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCchHHHHH
Q 007402 63 GKDVVARAKTGSGKTFAY 80 (605)
Q Consensus 63 gkdvlv~a~TGsGKT~a~ 80 (605)
+.++++.|++|+|||...
T Consensus 207 ~~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_dssp SCEEEEECCTTSSHHHHH
T ss_pred CCCeEEEcCCCCCHHHHH
Confidence 367999999999999743
No 206
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=77.12 E-value=1.4 Score=46.44 Aligned_cols=45 Identities=16% Similarity=0.262 Sum_probs=33.0
Q ss_pred hCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHH
Q 007402 61 LEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQ 113 (605)
Q Consensus 61 l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~ 113 (605)
....++++.|+||||||... .+++..++.. +..++|+=|..|+..
T Consensus 51 ~~~~h~~i~G~tGsGKs~~~-~~li~~~~~~-------g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 51 AEPRHLLVNGATGTGKSVLL-RELAYTGLLR-------GDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGGCEEEEECTTSSHHHHH-HHHHHHHHHT-------TCEEEEEEETTHHHH
T ss_pred cCcceEEEECCCCCCHHHHH-HHHHHHHHHC-------CCcEEEEeCCCchhH
Confidence 34578999999999999864 4455555542 556888889888753
No 207
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=76.68 E-value=2.7 Score=44.55 Aligned_cols=69 Identities=13% Similarity=0.122 Sum_probs=49.3
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCccc
Q 007402 99 APAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSF 178 (605)
Q Consensus 99 ~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~ 178 (605)
..++||.|||+.-|+++++.+... ++.+..+++..........-.+..+|+||| +.+..| ++
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~--------g~~~~~lh~~~~~~~~~~f~~g~~~vLVaT-----~v~~~G-----iD 249 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKS--------GKRVIQLSRKTFDTEYPKTKLTDWDFVVTT-----DISEMG-----AN 249 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT--------TCCEEEECTTTHHHHGGGGGSSCCSEEEEC-----GGGGSS-----CC
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHc--------CCeEEECCHHHHHHHHHhhccCCceEEEEC-----CHHHhC-----cC
Confidence 347999999999999888887653 567788888765444344344678999999 455555 56
Q ss_pred CCCceEEE
Q 007402 179 SDSLKILV 186 (605)
Q Consensus 179 l~~l~~lV 186 (605)
+.. .+||
T Consensus 250 ip~-~~VI 256 (451)
T 2jlq_A 250 FRA-GRVI 256 (451)
T ss_dssp CCC-SEEE
T ss_pred CCC-CEEE
Confidence 666 5544
No 208
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=76.53 E-value=8.3 Score=43.86 Aligned_cols=78 Identities=18% Similarity=0.191 Sum_probs=57.8
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHHHHh---cCCcceEEEEEeCCCCHHHHHHHHcC---------CCcEEEECCchHHH
Q 007402 99 APAALVLVPTRELCQQVYSEVMALIELC---KGQVQLKVVQLTSSMPASDLRAALAG---------PPDIVIATPGCMPK 166 (605)
Q Consensus 99 ~~~~LilvPtreLa~Qv~~~~~~l~~~~---~~~~~i~v~~l~~~~~~~~~~~~l~~---------~~dIvV~TP~~l~~ 166 (605)
+..+||.+|+++-+..+++.+......+ ....++.+..++|+.+...+...+.. ...||||| +
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT-----~ 377 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVIST-----N 377 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEEC-----T
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeC-----c
Confidence 5679999999999999999888644322 11126889999999998877766543 45799999 4
Q ss_pred HHhcCCCCCcccCCCceEEE
Q 007402 167 CLSTGVLQSKSFSDSLKILV 186 (605)
Q Consensus 167 ~l~~~~~~~~~~l~~l~~lV 186 (605)
.+..+ +++..+.+||
T Consensus 378 iae~G-----idIp~v~~VI 392 (773)
T 2xau_A 378 IAETS-----LTIDGIVYVV 392 (773)
T ss_dssp HHHHT-----CCCTTEEEEE
T ss_pred HHHhC-----cCcCCeEEEE
Confidence 55555 6677787666
No 209
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=76.38 E-value=12 Score=35.92 Aligned_cols=56 Identities=29% Similarity=0.351 Sum_probs=43.4
Q ss_pred CCeEEEEecchhHHHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 007402 283 QKKALIFTNTIDMAFRLKLFLEKF----GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 342 (605)
Q Consensus 283 ~~k~IIFv~s~~~~~~L~~~L~~~----gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~ 342 (605)
..++||.++++..+..+...++.+ ++.+..++|+.+.......+ .+..+|+|+|..
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~ 170 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPG 170 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHH
Confidence 457999999999988888777665 88999999998866543322 356899999964
No 210
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=75.83 E-value=2.7 Score=47.11 Aligned_cols=69 Identities=16% Similarity=0.174 Sum_probs=48.8
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCccc
Q 007402 99 APAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSF 178 (605)
Q Consensus 99 ~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~ 178 (605)
+.++||+|||++-++.+++.+... ++.+..++|............+..+|+||| +.+..| ++
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~--------g~~v~~lHg~eR~~v~~~F~~g~~~VLVaT-----dv~e~G-----ID 471 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA--------GKRVIQLNRKSYDTEYPKCKNGDWDFVITT-----DISEMG-----AN 471 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT--------TCCEEEECSSSHHHHGGGGGTCCCSEEEEC-----GGGGTT-----CC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC--------CCeEEEeChHHHHHHHHHHHCCCceEEEEC-----chhhcc-----ee
Confidence 567999999999999888877653 577888888543333333334678999999 455555 55
Q ss_pred CCCceEEE
Q 007402 179 SDSLKILV 186 (605)
Q Consensus 179 l~~l~~lV 186 (605)
+. +.+||
T Consensus 472 ip-v~~VI 478 (673)
T 2wv9_A 472 FG-ASRVI 478 (673)
T ss_dssp CC-CSEEE
T ss_pred eC-CcEEE
Confidence 55 66655
No 211
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=74.02 E-value=8.3 Score=36.29 Aligned_cols=55 Identities=13% Similarity=0.246 Sum_probs=44.3
Q ss_pred CCeEEEEecchhHHHHHHHHHHHc-----CCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 007402 283 QKKALIFTNTIDMAFRLKLFLEKF-----GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 342 (605)
Q Consensus 283 ~~k~IIFv~s~~~~~~L~~~L~~~-----gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~ 342 (605)
..++||.|+++..+......++.+ ++.+..++|+.+...+...+ ...+|+|+|..
T Consensus 92 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~ 151 (230)
T 2oxc_A 92 STQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPG 151 (230)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHH
Confidence 458999999999999988888775 67889999999876654332 35899999975
No 212
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=73.49 E-value=5.5 Score=45.59 Aligned_cols=18 Identities=22% Similarity=0.449 Sum_probs=15.5
Q ss_pred CCCcEEEEcCCCchHHHH
Q 007402 62 EGKDVVARAKTGSGKTFA 79 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a 79 (605)
.++.+++.+|+|+|||..
T Consensus 237 ~~~~vLL~Gp~GtGKTtL 254 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLI 254 (806)
T ss_dssp CCCEEEECSCTTSSHHHH
T ss_pred CCCeEEEECcCCCCHHHH
Confidence 357899999999999973
No 213
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.21 E-value=0.65 Score=49.20 Aligned_cols=56 Identities=23% Similarity=0.373 Sum_probs=35.3
Q ss_pred hhhcccCcccCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHH
Q 007402 21 EAEEEKSFEELGLDLRLVHALNKK---GIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFA 79 (605)
Q Consensus 21 ~~~~~~~f~~~~L~~~l~~al~~~---g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a 79 (605)
...+..+|++.+--+...+.|.+. -+.+|-.++...++ --+.+|+.||+|+|||+.
T Consensus 173 ~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~---~prGvLL~GPPGtGKTll 231 (437)
T 4b4t_L 173 FEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIK---PPKGVLLYGPPGTGKTLL 231 (437)
T ss_dssp EESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCC---CCCEEEEESCTTSSHHHH
T ss_pred ccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeEEEECCCCCcHHHH
Confidence 345678899997444555555442 23344444433321 237899999999999984
No 214
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=72.62 E-value=2.3 Score=43.87 Aligned_cols=71 Identities=15% Similarity=0.285 Sum_probs=44.9
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHH----cCCCcEEEECCchHHHHHhcCCCC
Q 007402 99 APAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL----AGPPDIVIATPGCMPKCLSTGVLQ 174 (605)
Q Consensus 99 ~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l----~~~~dIvV~TP~~l~~~l~~~~~~ 174 (605)
..++||.|++++-+..+++.+... ++.+..++|+.+...+...+ .+...|+|+|. .+..|
T Consensus 280 ~~~~lvf~~~~~~~~~l~~~l~~~--------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~G--- 343 (414)
T 3eiq_A 280 ITQAVIFINTRRKVDWLTEKMHAR--------DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD-----LLARG--- 343 (414)
T ss_dssp CSSCEEECSCHHHHHHHHHHHHTT--------TCCCEEC---CHHHHHHHHHHHHSCC---CEEECS-----SCC-----
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhc--------CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECC-----ccccC---
Confidence 457999999999999888877653 57788888888765544433 35678999993 23333
Q ss_pred CcccCCCceEEEE
Q 007402 175 SKSFSDSLKILVL 187 (605)
Q Consensus 175 ~~~~l~~l~~lVi 187 (605)
+++.++++||.
T Consensus 344 --idip~v~~Vi~ 354 (414)
T 3eiq_A 344 --IDVQQVSLVIN 354 (414)
T ss_dssp --CCGGGCSCEEE
T ss_pred --CCccCCCEEEE
Confidence 66667777764
No 215
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=71.78 E-value=10 Score=35.90 Aligned_cols=56 Identities=20% Similarity=0.255 Sum_probs=43.5
Q ss_pred CCeEEEEecchhHHHHHHHHHHH----cCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 007402 283 QKKALIFTNTIDMAFRLKLFLEK----FGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 342 (605)
Q Consensus 283 ~~k~IIFv~s~~~~~~L~~~L~~----~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~ 342 (605)
..++||.|+++..+..+...+.. .++.+..++|+.+.......+. . ..+|+|+|..
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~~~I~v~Tp~ 161 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE---R-GVEICIATPG 161 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH---H-CCSEEEECHH
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc---C-CCCEEEECHH
Confidence 45799999999988887766655 4899999999998776654433 3 4799999964
No 216
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=71.52 E-value=5.6 Score=44.00 Aligned_cols=69 Identities=13% Similarity=0.111 Sum_probs=49.4
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCccc
Q 007402 99 APAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSF 178 (605)
Q Consensus 99 ~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~ 178 (605)
..++||.|+|++-|+.+++.+... ++.+..++|............+..+||||| +.+..| ++
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~--------g~~v~~lhg~~R~~~l~~F~~g~~~VLVaT-----dv~~rG-----iD 416 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKS--------GKRVIQLSRKTFDTEYPKTKLTDWDFVVTT-----DISEMG-----AN 416 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHT--------TCCEEEECTTTHHHHTTHHHHSCCSEEEEC-----GGGGTT-----CC
T ss_pred CCCEEEEECChhHHHHHHHHHHHc--------CCcEEEEChHHHHHHHHhhcCCCcEEEEEC-----cHHHcC-----cc
Confidence 457999999999999999888764 577888888644444444445788999999 455555 45
Q ss_pred CCCceEEE
Q 007402 179 SDSLKILV 186 (605)
Q Consensus 179 l~~l~~lV 186 (605)
+. +++||
T Consensus 417 i~-v~~VI 423 (618)
T 2whx_A 417 FR-AGRVI 423 (618)
T ss_dssp CC-CSEEE
T ss_pred cC-ceEEE
Confidence 53 66653
No 217
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=71.04 E-value=6.1 Score=39.52 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCchHHHHH
Q 007402 63 GKDVVARAKTGSGKTFAY 80 (605)
Q Consensus 63 gkdvlv~a~TGsGKT~a~ 80 (605)
++.+++.||+|+|||...
T Consensus 152 ~~~lll~G~~GtGKT~La 169 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLL 169 (308)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 578999999999999754
No 218
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=71.02 E-value=1.6 Score=42.02 Aligned_cols=52 Identities=17% Similarity=0.139 Sum_probs=29.2
Q ss_pred ccCcccCCCCHHHHHHHHHC--CCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHH
Q 007402 25 EKSFEELGLDLRLVHALNKK--GIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFA 79 (605)
Q Consensus 25 ~~~f~~~~L~~~l~~al~~~--g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a 79 (605)
..+|+++.-.+.+.+.|.++ .+..|..+.... +-..+.+++.||+|+|||..
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g---~~~~~~vll~G~~GtGKT~l 55 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLG---AKVPKGALLLGPPGCGKTLL 55 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCCC---------CCCCCEEEEESCTTSSHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcC---CCCCceEEEECCCCCCHHHH
Confidence 35788887566666666542 012222222111 11336799999999999974
No 219
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=70.69 E-value=3.2 Score=43.59 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=18.3
Q ss_pred HHHHHHHHh--CCCcEEEEcCCCchHHHH
Q 007402 53 QQASIPLIL--EGKDVVARAKTGSGKTFA 79 (605)
Q Consensus 53 Q~~aIp~~l--~gkdvlv~a~TGsGKT~a 79 (605)
+..++..++ .|.-+++.+|||||||..
T Consensus 155 ~~~~L~~l~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 155 NHDNFRRLIKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp HHHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred HHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 334444333 345688999999999973
No 220
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=69.07 E-value=42 Score=33.03 Aligned_cols=18 Identities=28% Similarity=0.110 Sum_probs=14.1
Q ss_pred CCcEEEEcCCCchHHHHH
Q 007402 63 GKDVVARAKTGSGKTFAY 80 (605)
Q Consensus 63 gkdvlv~a~TGsGKT~a~ 80 (605)
++-+.+.+++|+|||...
T Consensus 98 ~~~i~i~g~~G~GKTT~~ 115 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTA 115 (295)
T ss_dssp SEEEEEECCTTTTHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 445778899999999744
No 221
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=68.68 E-value=8.9 Score=37.55 Aligned_cols=46 Identities=15% Similarity=0.000 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHCCCCCChHHH-HHHHHHHhCCC-----cEEEEcCCCchHHHHHH
Q 007402 33 LDLRLVHALNKKGIQKPTLIQ-QASIPLILEGK-----DVVARAKTGSGKTFAYL 81 (605)
Q Consensus 33 L~~~l~~al~~~g~~~pt~iQ-~~aIp~~l~gk-----dvlv~a~TGsGKT~a~~ 81 (605)
-..++.+-|...||. |++ ..++...+.|+ .+++.+|+|+|||..+.
T Consensus 71 ~~n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 71 SSNRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp GGCHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred chHHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 345889999999985 555 33355566664 49999999999998543
No 222
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=68.28 E-value=14 Score=33.73 Aligned_cols=56 Identities=14% Similarity=0.196 Sum_probs=42.9
Q ss_pred CCeEEEEecchhHHHHHHHHHHHc-----CCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 007402 283 QKKALIFTNTIDMAFRLKLFLEKF-----GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 342 (605)
Q Consensus 283 ~~k~IIFv~s~~~~~~L~~~L~~~-----gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~ 342 (605)
..++||.|+++..+..+...+..+ ++.+..++|+.+...... .+ .+..+|+|+|..
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~i~v~T~~ 131 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM---RL-DDTVHVVIATPG 131 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHH---HT-TSCCSEEEECHH
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHH---hc-CCCCCEEEeCHH
Confidence 457999999999998888877664 678899999987665432 22 356899999974
No 223
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=68.01 E-value=6.4 Score=45.37 Aligned_cols=16 Identities=31% Similarity=0.229 Sum_probs=14.0
Q ss_pred cEEEEcCCCchHHHHH
Q 007402 65 DVVARAKTGSGKTFAY 80 (605)
Q Consensus 65 dvlv~a~TGsGKT~a~ 80 (605)
.+++.||||+|||..+
T Consensus 590 ~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEBSCSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999843
No 224
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=67.52 E-value=11 Score=35.44 Aligned_cols=55 Identities=16% Similarity=0.231 Sum_probs=41.6
Q ss_pred CCeEEEEecchhHHHHHHHHHHHcC----CcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 007402 283 QKKALIFTNTIDMAFRLKLFLEKFG----IKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 342 (605)
Q Consensus 283 ~~k~IIFv~s~~~~~~L~~~L~~~g----i~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~ 342 (605)
..++||.|+++..+......+..++ +.++.++|+.+.......+ +..+|+|+|..
T Consensus 97 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~ 155 (236)
T 2pl3_A 97 GLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPG 155 (236)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHH
Confidence 5689999999999998888887764 7889999988765543322 46899999964
No 225
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=67.26 E-value=10 Score=37.41 Aligned_cols=70 Identities=19% Similarity=0.226 Sum_probs=50.0
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHH----cCCCcEEEECCchHHHHHhcCCC
Q 007402 98 LAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL----AGPPDIVIATPGCMPKCLSTGVL 173 (605)
Q Consensus 98 ~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l----~~~~dIvV~TP~~l~~~l~~~~~ 173 (605)
.+.++||.+++++-+..+++.+. .+..++|+.+...+...+ .+..+|+|+| +.+..|
T Consensus 219 ~~~~~lvf~~~~~~~~~l~~~l~------------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T-----~~~~~G-- 279 (337)
T 2z0m_A 219 KDKGVIVFVRTRNRVAKLVRLFD------------NAIELRGDLPQSVRNRNIDAFREGEYDMLITT-----DVASRG-- 279 (337)
T ss_dssp CCSSEEEECSCHHHHHHHHTTCT------------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-----HHHHTT--
T ss_pred CCCcEEEEEcCHHHHHHHHHHhh------------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEc-----CccccC--
Confidence 35679999999998877665443 355678888776554433 3678999999 566666
Q ss_pred CCcccCCCceEEEEeC
Q 007402 174 QSKSFSDSLKILVLDE 189 (605)
Q Consensus 174 ~~~~~l~~l~~lViDE 189 (605)
+++..++++|.-.
T Consensus 280 ---id~~~~~~Vi~~~ 292 (337)
T 2z0m_A 280 ---LDIPLVEKVINFD 292 (337)
T ss_dssp ---CCCCCBSEEEESS
T ss_pred ---CCccCCCEEEEec
Confidence 6777888888643
No 226
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=67.21 E-value=32 Score=34.62 Aligned_cols=52 Identities=12% Similarity=0.192 Sum_probs=31.6
Q ss_pred ceEEEEeCcchhc-cCCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHh
Q 007402 182 LKILVLDEADLLL-SYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLI 233 (605)
Q Consensus 182 l~~lViDEad~i~-~~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~ 233 (605)
.+++++|.+-+.- ...+...+..+...+.+...++.+.+|...++......+
T Consensus 212 ~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~ 264 (328)
T 3e70_C 212 IDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQF 264 (328)
T ss_dssp CSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHH
T ss_pred chhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHH
Confidence 3467788776532 223445566666655566677788888776665544444
No 227
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=67.18 E-value=6.4 Score=42.35 Aligned_cols=42 Identities=24% Similarity=0.359 Sum_probs=28.7
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHH
Q 007402 36 RLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTF 78 (605)
Q Consensus 36 ~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~ 78 (605)
++...+.. ++.--..+-..++-.+..+..+++.||+|+|||.
T Consensus 15 ~l~~~l~~-~ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~ 56 (500)
T 3nbx_X 15 RLSSSLEK-GLYERSHAIRLCLLAALSGESVFLLGPPGIAKSL 56 (500)
T ss_dssp HHHHHHHT-TCSSCHHHHHHHHHHHHHTCEEEEECCSSSSHHH
T ss_pred HHHHHHHh-hhHHHHHHHHHHHHHHhcCCeeEeecCchHHHHH
Confidence 34455553 3333344445556667788999999999999997
No 228
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=67.04 E-value=11 Score=37.57 Aligned_cols=30 Identities=23% Similarity=0.189 Sum_probs=20.3
Q ss_pred HHHHHhCC-----CcEEEEcCCCchHHHHHHHHHH
Q 007402 56 SIPLILEG-----KDVVARAKTGSGKTFAYLLPLL 85 (605)
Q Consensus 56 aIp~~l~g-----kdvlv~a~TGsGKT~a~~lpil 85 (605)
.+..++.| .-+++.|++|+|||...+-.+.
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45555543 4589999999999975443333
No 229
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=66.93 E-value=5.3 Score=43.13 Aligned_cols=39 Identities=28% Similarity=0.126 Sum_probs=26.5
Q ss_pred HHHHHHCCCCCChHHHHHHHHH-HhCCCcEEEEcCCCchHHH
Q 007402 38 VHALNKKGIQKPTLIQQASIPL-ILEGKDVVARAKTGSGKTF 78 (605)
Q Consensus 38 ~~al~~~g~~~pt~iQ~~aIp~-~l~gkdvlv~a~TGsGKT~ 78 (605)
+..|.++|.- ++.+..-+.. +-.|..+++.+|||||||.
T Consensus 236 ~~~l~~~G~~--~~~~l~~l~~~v~~g~~i~I~GptGSGKTT 275 (511)
T 2oap_1 236 PIDLIEKGTV--PSGVLAYLWLAIEHKFSAIVVGETASGKTT 275 (511)
T ss_dssp HHHHHHTTSS--CHHHHHHHHHHHHTTCCEEEEESTTSSHHH
T ss_pred hhhHHhcCCC--CHHHHHHHHHHHhCCCEEEEECCCCCCHHH
Confidence 4556667742 3334444443 4467889999999999997
No 230
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.90 E-value=1.6 Score=46.05 Aligned_cols=55 Identities=22% Similarity=0.492 Sum_probs=35.9
Q ss_pred hhhcccCcccCC-CCHHHHHHHHH---CCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHH
Q 007402 21 EAEEEKSFEELG-LDLRLVHALNK---KGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFA 79 (605)
Q Consensus 21 ~~~~~~~f~~~~-L~~~l~~al~~---~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a 79 (605)
...+..+|++.| |+.. .+.|.+ +-+.+|-.++...++ --+.+|+.+|+|+|||+.
T Consensus 174 ~~~p~v~~~DIgGld~~-k~~L~e~v~~Pl~~pe~f~~~Gi~---~prGvLLyGPPGTGKTlL 232 (437)
T 4b4t_I 174 DKSPTESYSDIGGLESQ-IQEIKESVELPLTHPELYEEMGIK---PPKGVILYGAPGTGKTLL 232 (437)
T ss_dssp ESSCCCCGGGTCSCHHH-HHHHHHHHHHHHHCCHHHHHHTCC---CCSEEEEESSTTTTHHHH
T ss_pred ccCCCCcceecCcHHHH-HHHHHHHHHHHHhCHHHHHhCCCC---CCCCCceECCCCchHHHH
Confidence 345678999997 6543 334433 234556666554432 237899999999999983
No 231
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=66.16 E-value=3.2 Score=39.99 Aligned_cols=53 Identities=17% Similarity=0.182 Sum_probs=30.5
Q ss_pred cccCcccCCCCHHHHHHHHHCC--CCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHH
Q 007402 24 EEKSFEELGLDLRLVHALNKKG--IQKPTLIQQASIPLILEGKDVVARAKTGSGKTFA 79 (605)
Q Consensus 24 ~~~~f~~~~L~~~l~~al~~~g--~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a 79 (605)
+..+|+++.-.+.+.+.|.++- +..|..++...+ -..+.+++.+|+|+|||..
T Consensus 7 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~vll~G~~GtGKT~l 61 (257)
T 1lv7_A 7 IKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGG---KIPKGVLMVGPPGTGKTLL 61 (257)
T ss_dssp SCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHH
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCC---CCCCeEEEECcCCCCHHHH
Confidence 4578999987777666665420 111111111100 1135699999999999974
No 232
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=64.38 E-value=4.1 Score=40.84 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=19.1
Q ss_pred HHHHHhCCCcEEEEcCCCchHHHH
Q 007402 56 SIPLILEGKDVVARAKTGSGKTFA 79 (605)
Q Consensus 56 aIp~~l~gkdvlv~a~TGsGKT~a 79 (605)
+.-.+..+..+++.||+|+|||..
T Consensus 39 l~~~l~~~~~vll~G~pGtGKT~l 62 (331)
T 2r44_A 39 LLIGICTGGHILLEGVPGLAKTLS 62 (331)
T ss_dssp HHHHHHHTCCEEEESCCCHHHHHH
T ss_pred HHHHHHcCCeEEEECCCCCcHHHH
Confidence 334455688999999999999973
No 233
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=64.06 E-value=5.1 Score=41.42 Aligned_cols=41 Identities=27% Similarity=0.430 Sum_probs=28.0
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHH
Q 007402 62 EGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRE 110 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtre 110 (605)
.+.++++.++||||||...-.-+.+.. . .+.+++|+=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~-~-------~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY-M-------QGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH-T-------TTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH-H-------CCCEEEEEeCCcC
Confidence 467899999999999975544333332 2 2556777777655
No 234
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=63.67 E-value=4.7 Score=38.96 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=16.1
Q ss_pred hCCCcEEEEcCCCchHHHH
Q 007402 61 LEGKDVVARAKTGSGKTFA 79 (605)
Q Consensus 61 l~gkdvlv~a~TGsGKT~a 79 (605)
..+..+++.|++|+|||..
T Consensus 27 ~~~~~vll~G~~GtGKt~l 45 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELI 45 (265)
T ss_dssp TSCSCEEEECCTTSCHHHH
T ss_pred CCCCCEEEECCCCCcHHHH
Confidence 3457899999999999973
No 235
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=63.45 E-value=4.8 Score=41.35 Aligned_cols=25 Identities=28% Similarity=0.626 Sum_probs=20.4
Q ss_pred HHHHHhCCCc--EEEEcCCCchHHHHH
Q 007402 56 SIPLILEGKD--VVARAKTGSGKTFAY 80 (605)
Q Consensus 56 aIp~~l~gkd--vlv~a~TGsGKT~a~ 80 (605)
.+..+++|.+ |++-+.||||||...
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 4566788976 789999999999753
No 236
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=63.17 E-value=6.1 Score=40.32 Aligned_cols=18 Identities=28% Similarity=0.368 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCchHHHHH
Q 007402 63 GKDVVARAKTGSGKTFAY 80 (605)
Q Consensus 63 gkdvlv~a~TGsGKT~a~ 80 (605)
.+.+++.+|+|+|||..+
T Consensus 117 ~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CSEEEEESSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 468999999999999843
No 237
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=62.97 E-value=7.3 Score=36.72 Aligned_cols=20 Identities=30% Similarity=0.325 Sum_probs=16.2
Q ss_pred CCCcEEEEcCCCchHHHHHH
Q 007402 62 EGKDVVARAKTGSGKTFAYL 81 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a~~ 81 (605)
.|.-+++.|++|+|||...+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~ 41 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQ 41 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 45678999999999997543
No 238
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=62.83 E-value=12 Score=36.50 Aligned_cols=19 Identities=32% Similarity=0.333 Sum_probs=16.0
Q ss_pred CCCcEEEEcCCCchHHHHH
Q 007402 62 EGKDVVARAKTGSGKTFAY 80 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a~ 80 (605)
....+++.||+|+|||...
T Consensus 49 ~~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3578999999999999743
No 239
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=62.80 E-value=95 Score=31.19 Aligned_cols=52 Identities=23% Similarity=0.153 Sum_probs=29.9
Q ss_pred ceEEEEeCcchhccCCcHH---HHHHHHhhCCC-----CceEEEEeeecChhHHHHHHHh
Q 007402 182 LKILVLDEADLLLSYGYED---DLKALSAVIPR-----GCQCLLMSATSSSDVDKLKKLI 233 (605)
Q Consensus 182 l~~lViDEad~i~~~g~~~---~l~~i~~~lp~-----~~q~il~SATl~~~v~~l~~~~ 233 (605)
-.++|+-=+|+....+... .+...+..++. ...++.+||.-...++.+....
T Consensus 219 p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i 278 (355)
T 3p32_A 219 ADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTV 278 (355)
T ss_dssp CSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHH
T ss_pred CCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHH
Confidence 3467777777653322222 23333322321 3578999998887777776654
No 240
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=62.72 E-value=1.2 Score=44.07 Aligned_cols=53 Identities=13% Similarity=0.211 Sum_probs=26.6
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCChHHHH-HHHHHH--hCCCcEEEEcCCCchHHHH
Q 007402 24 EEKSFEELGLDLRLVHALNKKGIQKPTLIQQ-ASIPLI--LEGKDVVARAKTGSGKTFA 79 (605)
Q Consensus 24 ~~~~f~~~~L~~~l~~al~~~g~~~pt~iQ~-~aIp~~--l~gkdvlv~a~TGsGKT~a 79 (605)
+..+|++++--+.+.+.|.+.= ..|+.. .++..+ .-.+.+++.+|+|+|||..
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i---~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAI---LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLL 60 (274)
T ss_dssp -------CCHHHHHHHHHHHHH---THHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHH---HHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHH
Confidence 4578999987777777776521 112211 111111 1124499999999999973
No 241
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=62.65 E-value=4 Score=38.67 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=17.3
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHH
Q 007402 63 GKDVVARAKTGSGKTFAYLLPLLH 86 (605)
Q Consensus 63 gkdvlv~a~TGsGKT~a~~lpil~ 86 (605)
|.-+++.|++|+|||...+--+.+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 466899999999999644333333
No 242
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=62.16 E-value=3.6 Score=43.69 Aligned_cols=54 Identities=20% Similarity=0.201 Sum_probs=39.7
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEEC
Q 007402 99 APAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIAT 160 (605)
Q Consensus 99 ~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~T 160 (605)
+.++||.|||+.-|..+++.+... ++.+..+++............+..+|+|||
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~--------g~~v~~lh~~~R~~~~~~f~~g~~~iLVaT 243 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRA--------GKKVIQLNRKSYDTEYPKCKNGDWDFVITT 243 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT--------TCCEEEESTTCCCCCGGGSSSCCCSEEEES
T ss_pred CCCEEEEeCChHHHHHHHHHHHhc--------CCcEEecCHHHHHHHHhhccCCCceEEEEC
Confidence 457999999999999988887764 577888888643322223334678999999
No 243
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=61.96 E-value=5.5 Score=40.29 Aligned_cols=25 Identities=36% Similarity=0.502 Sum_probs=20.1
Q ss_pred HHHHHhCCCc--EEEEcCCCchHHHHH
Q 007402 56 SIPLILEGKD--VVARAKTGSGKTFAY 80 (605)
Q Consensus 56 aIp~~l~gkd--vlv~a~TGsGKT~a~ 80 (605)
.|..+++|.+ +++-+.||||||...
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 4556778876 789999999999864
No 244
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=61.23 E-value=14 Score=44.28 Aligned_cols=62 Identities=23% Similarity=0.323 Sum_probs=44.9
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHHhhcCC----CCCCCCCeEEEEcCcHHHHHHHHHHHHHHHH
Q 007402 62 EGKDVVARAKTGSGKTFAYLLPLLHRLFNESS----PKSKLAPAALVLVPTRELCQQVYSEVMALIE 124 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~----~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~ 124 (605)
.|. .+|.|.-|||||.+..--++..++..+. .......++|+++=|+.=+..+.+++...+.
T Consensus 16 ~g~-~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L~ 81 (1180)
T 1w36_B 16 QGE-RLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIH 81 (1180)
T ss_dssp SSC-EEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHHH
T ss_pred CCC-EEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHHH
Confidence 454 4999999999999988888887775320 0012245799999999888888887776543
No 245
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=61.19 E-value=21 Score=33.16 Aligned_cols=57 Identities=23% Similarity=0.334 Sum_probs=40.1
Q ss_pred CCCeEEEEecchhHHHHHHHHHHHc---CCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 007402 282 VQKKALIFTNTIDMAFRLKLFLEKF---GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 342 (605)
Q Consensus 282 ~~~k~IIFv~s~~~~~~L~~~L~~~---gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~ 342 (605)
...++||.++++..+..+...++.+ ++.++.++|+.+...+.. .+.. ..+|+|+|..
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~iiv~Tp~ 152 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIE---DISK-GVDIIIATPG 152 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHH---HHHS-CCSEEEECHH
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHH---HhcC-CCCEEEECHH
Confidence 3567999999999999999988885 678889999877554432 3333 4899999964
No 246
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=61.10 E-value=9.4 Score=35.49 Aligned_cols=55 Identities=13% Similarity=0.109 Sum_probs=36.4
Q ss_pred CCeEEEEecchhHHHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 007402 283 QKKALIFTNTIDMAFRLKLFLEKF----GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 342 (605)
Q Consensus 283 ~~k~IIFv~s~~~~~~L~~~L~~~----gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~ 342 (605)
..++||.|+++..+..+...+..+ ++.+..++|+.+....... + ...+|+|+|..
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~--~~~~iiv~Tp~ 140 (224)
T 1qde_A 82 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---L--RDAQIVVGTPG 140 (224)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------C--TTCSEEEECHH
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---C--CCCCEEEECHH
Confidence 458999999999998888877664 6788999998765544322 2 23899999965
No 247
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=60.89 E-value=15 Score=43.45 Aligned_cols=59 Identities=14% Similarity=0.328 Sum_probs=49.4
Q ss_pred CCCeEEEEecchhHHHHHHHHHHHc----CC----cEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 007402 282 VQKKALIFTNTIDMAFRLKLFLEKF----GI----KSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 342 (605)
Q Consensus 282 ~~~k~IIFv~s~~~~~~L~~~L~~~----gi----~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~ 342 (605)
...++||.++++..|..+...++.+ ++ .++.++|+.+...+....+.+.. .+|+|+|+.
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~ 164 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQ 164 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHH
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHH
Confidence 4568999999999998888777654 56 88999999999888777777776 899999974
No 248
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=60.84 E-value=22 Score=37.69 Aligned_cols=75 Identities=17% Similarity=0.158 Sum_probs=49.5
Q ss_pred CeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHH----HcCCCcEEEECCchHHHHHhcCCCCC
Q 007402 100 PAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAA----LAGPPDIVIATPGCMPKCLSTGVLQS 175 (605)
Q Consensus 100 ~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~----l~~~~dIvV~TP~~l~~~l~~~~~~~ 175 (605)
...+|++.+.+-+..+++.+... ..++..++|+++....... ..+..+|+|+|+ +.+..|
T Consensus 348 ~~~~ivf~~~~~~~~l~~~L~~~--------~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~----~~~~~G---- 411 (510)
T 2oca_A 348 ENAFVMFKHVSHGKAIFDLIKNE--------YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASY----GVFSTG---- 411 (510)
T ss_dssp CEEEEEESSHHHHHHHHHHHHTT--------CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEH----HHHHHS----
T ss_pred CCeEEEEecHHHHHHHHHHHHHc--------CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEc----Chhhcc----
Confidence 34555555555555555544432 2478889999886654433 246789999994 455556
Q ss_pred cccCCCceEEEEeCcc
Q 007402 176 KSFSDSLKILVLDEAD 191 (605)
Q Consensus 176 ~~~l~~l~~lViDEad 191 (605)
+++.+++++|+..+.
T Consensus 412 -iDip~v~~vi~~~~~ 426 (510)
T 2oca_A 412 -ISVKNLHHVVLAHGV 426 (510)
T ss_dssp -CCCCSEEEEEESSCC
T ss_pred -cccccCcEEEEeCCC
Confidence 677889999998776
No 249
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=60.83 E-value=16 Score=40.87 Aligned_cols=74 Identities=14% Similarity=0.171 Sum_probs=53.7
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHH---HHHHHc---CCCcEEEECCchHHHHHhcCCCC
Q 007402 101 AALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASD---LRAALA---GPPDIVIATPGCMPKCLSTGVLQ 174 (605)
Q Consensus 101 ~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~---~~~~l~---~~~dIvV~TP~~l~~~l~~~~~~ 174 (605)
..+|+|+|+.-+.++++.+... ++.+..++|+.+... +...+. +..+|+||| +.+..|
T Consensus 322 g~iIf~~s~~~ie~la~~L~~~--------g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVAT-----di~e~G--- 385 (677)
T 3rc3_A 322 GDCIVCFSKNDIYSVSRQIEIR--------GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVAT-----DAIGMG--- 385 (677)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT--------TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEEC-----GGGGSS---
T ss_pred CCEEEEcCHHHHHHHHHHHHhc--------CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeC-----cHHHCC---
Confidence 3577799998888888877753 578889999998763 333444 457999999 445555
Q ss_pred CcccCCCceEEEEeCcchh
Q 007402 175 SKSFSDSLKILVLDEADLL 193 (605)
Q Consensus 175 ~~~~l~~l~~lViDEad~i 193 (605)
+++ ++.+||+-.+...
T Consensus 386 --lDi-~v~~VI~~~~~k~ 401 (677)
T 3rc3_A 386 --LNL-SIRRIIFYSLIKP 401 (677)
T ss_dssp --CCC-CBSEEEESCSBC-
T ss_pred --cCc-CccEEEECCcccc
Confidence 667 7999888777653
No 250
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=60.75 E-value=1.8 Score=46.11 Aligned_cols=70 Identities=16% Similarity=0.272 Sum_probs=0.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHH----cCCCcEEEECCchHHHHHhcCCCC
Q 007402 99 APAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL----AGPPDIVIATPGCMPKCLSTGVLQ 174 (605)
Q Consensus 99 ~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l----~~~~dIvV~TP~~l~~~l~~~~~~ 174 (605)
..++||.|||+.-|..+++.+... ++.+..++|+.+...+...+ .+..+|+||| +.+..|
T Consensus 333 ~~~~lvF~~s~~~~~~l~~~L~~~--------~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T-----~~~~~G--- 396 (479)
T 3fmp_B 333 IAQAMIFCHTRKTASWLAAELSKE--------GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTT-----NVCARG--- 396 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEeCcHHHHHHHHHHHHhC--------CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEc-----cccccC---
Confidence 457999999999999888887764 46677788887665443333 3567899999 445555
Q ss_pred CcccCCCceEEE
Q 007402 175 SKSFSDSLKILV 186 (605)
Q Consensus 175 ~~~~l~~l~~lV 186 (605)
+++.++.+||
T Consensus 397 --lDip~v~~VI 406 (479)
T 3fmp_B 397 --IDVEQVSVVI 406 (479)
T ss_dssp ------------
T ss_pred --CccccCCEEE
Confidence 6666777765
No 251
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=60.73 E-value=21 Score=32.49 Aligned_cols=56 Identities=20% Similarity=0.181 Sum_probs=43.3
Q ss_pred CCeEEEEecchhHHHHHHHHHHHc--CCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 007402 283 QKKALIFTNTIDMAFRLKLFLEKF--GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 342 (605)
Q Consensus 283 ~~k~IIFv~s~~~~~~L~~~L~~~--gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~ 342 (605)
..++||.|+++..+..+...+..+ ++.+..++|+.+.......+ . ...+|+|+|..
T Consensus 72 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~i~v~T~~ 129 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEAL---L-RGADAVVATPG 129 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHH---H-HCCSEEEECHH
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHh---h-CCCCEEEECHH
Confidence 458999999999999999988887 46788899988765543332 2 25799999964
No 252
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=60.52 E-value=11 Score=35.58 Aligned_cols=44 Identities=18% Similarity=0.221 Sum_probs=30.9
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHhCC----CcEEEEcCCCchHHHHH
Q 007402 35 LRLVHALNKKGIQKPTLIQQASIPLILEG----KDVVARAKTGSGKTFAY 80 (605)
Q Consensus 35 ~~l~~al~~~g~~~pt~iQ~~aIp~~l~g----kdvlv~a~TGsGKT~a~ 80 (605)
..|.+-|.-.|+ .|..+ -.++...+.+ +.+++.+|+|+|||..+
T Consensus 28 ~~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 28 RPIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp HHHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 467777777765 35555 5556666666 25999999999999643
No 253
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=60.50 E-value=4.6 Score=39.43 Aligned_cols=20 Identities=25% Similarity=0.233 Sum_probs=16.7
Q ss_pred HhCCCcEEEEcCCCchHHHH
Q 007402 60 ILEGKDVVARAKTGSGKTFA 79 (605)
Q Consensus 60 ~l~gkdvlv~a~TGsGKT~a 79 (605)
+..|.-+++.+|||||||..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH
T ss_pred hCCCCEEEEECCCCccHHHH
Confidence 34677899999999999973
No 254
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=60.50 E-value=1.8 Score=41.79 Aligned_cols=53 Identities=17% Similarity=0.197 Sum_probs=31.5
Q ss_pred hhcccCcccCCCCHHHHHHHHHCC--CCCChHHHHHHHHHHh--CCCcEEEEcCCCchHHHH
Q 007402 22 AEEEKSFEELGLDLRLVHALNKKG--IQKPTLIQQASIPLIL--EGKDVVARAKTGSGKTFA 79 (605)
Q Consensus 22 ~~~~~~f~~~~L~~~l~~al~~~g--~~~pt~iQ~~aIp~~l--~gkdvlv~a~TGsGKT~a 79 (605)
..+..+|+++.-.+.+...+..+- |..+ .++..+- -.+.+++.+|+|+|||..
T Consensus 9 ~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~-----~~~~~~~~~~~~g~ll~G~~G~GKTtl 65 (254)
T 1ixz_A 9 EAPKVTFKDVAGAEEAKEELKEIVEFLKNP-----SRFHEMGARIPKGVLLVGPPGVGKTHL 65 (254)
T ss_dssp CCCSCCGGGCCSCHHHHHHHHHHHHHHHCH-----HHHHHTTCCCCSEEEEECCTTSSHHHH
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHHCH-----HHHHHcCCCCCCeEEEECCCCCCHHHH
Confidence 345678999976666666665431 1111 1221110 124599999999999973
No 255
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=60.43 E-value=9.8 Score=31.30 Aligned_cols=36 Identities=14% Similarity=0.185 Sum_probs=32.6
Q ss_pred CCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCC
Q 007402 283 QKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELP 318 (605)
Q Consensus 283 ~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~ 318 (605)
..++++||.+-.++...+..|.+.|+++..|.|++.
T Consensus 55 ~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 55 DKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp TSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 568999999999999999999999999999999864
No 256
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=60.31 E-value=36 Score=35.61 Aligned_cols=18 Identities=28% Similarity=0.106 Sum_probs=14.0
Q ss_pred CcEEEEcCCCchHHHHHH
Q 007402 64 KDVVARAKTGSGKTFAYL 81 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a~~ 81 (605)
+-+++.+++|+|||....
T Consensus 99 ~vi~i~G~~GsGKTT~~~ 116 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAA 116 (425)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 346788999999998543
No 257
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=60.28 E-value=6.2 Score=40.20 Aligned_cols=19 Identities=32% Similarity=0.419 Sum_probs=16.0
Q ss_pred CCCcEEEEcCCCchHHHHH
Q 007402 62 EGKDVVARAKTGSGKTFAY 80 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a~ 80 (605)
....+++.+|+|+|||..+
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3468999999999999843
No 258
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=60.27 E-value=6.5 Score=43.84 Aligned_cols=108 Identities=14% Similarity=0.178 Sum_probs=62.4
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCC--------CCHHHHHHHH----cCCCcEEEECCchHHH
Q 007402 99 APAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSS--------MPASDLRAAL----AGPPDIVIATPGCMPK 166 (605)
Q Consensus 99 ~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~--------~~~~~~~~~l----~~~~dIvV~TP~~l~~ 166 (605)
+.++||.|+++..+..+++.+........ .++.+..++|+ ++...+...+ .+..+|+|||.
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~--~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~----- 472 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAE--VGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATT----- 472 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-------CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEEC-----
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccc--cCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcc-----
Confidence 67899999999999999988775311111 14778888888 7776555443 35689999992
Q ss_pred HHhcCCCCCcccCCCceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEEeeec
Q 007402 167 CLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATS 222 (605)
Q Consensus 167 ~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~SATl 222 (605)
.+..| +++.++++||.=+ +.+.....++.+-+.-..+..+++++..-
T Consensus 473 ~~~~G-----IDip~v~~VI~~d----~p~s~~~~~Qr~GRArr~g~~~~l~~~~~ 519 (699)
T 4gl2_A 473 VAEEG-----LDIKECNIVIRYG----LVTNEIAMVQARGRARADESTYVLVAHSG 519 (699)
T ss_dssp SCCTT-----SCCCSCCCCEEES----CCCCHHHHHHHHTTSCSSSCEEEEEEESS
T ss_pred ccccC-----CccccCCEEEEeC----CCCCHHHHHHHcCCCCCCCceEEEEEeCC
Confidence 33333 7777888877432 23333444554444222234555555443
No 259
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=60.22 E-value=6.2 Score=41.17 Aligned_cols=25 Identities=40% Similarity=0.628 Sum_probs=21.1
Q ss_pred HHHHHhCCCc--EEEEcCCCchHHHHH
Q 007402 56 SIPLILEGKD--VVARAKTGSGKTFAY 80 (605)
Q Consensus 56 aIp~~l~gkd--vlv~a~TGsGKT~a~ 80 (605)
.|..++.|.+ +++.+.||||||...
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 5677889976 789999999999865
No 260
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=60.17 E-value=7 Score=46.70 Aligned_cols=38 Identities=24% Similarity=0.361 Sum_probs=28.3
Q ss_pred EEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcH
Q 007402 67 VARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTR 109 (605)
Q Consensus 67 lv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtr 109 (605)
+|.|..|||||.+.+--|...+... ..+.++|+|||..
T Consensus 5 lV~agAGSGKT~~l~~ri~~ll~~~-----~~~~~il~lVP~q 42 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQDELRRA-----PFGKPIIFLVPDQ 42 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHHC-----TTSSCEEEECCGG
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhC-----CCCCcEEEEecCc
Confidence 7889999999998766666555442 2356799999965
No 261
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=60.12 E-value=5.4 Score=40.71 Aligned_cols=25 Identities=32% Similarity=0.603 Sum_probs=19.8
Q ss_pred HHHHHhCCCc--EEEEcCCCchHHHHH
Q 007402 56 SIPLILEGKD--VVARAKTGSGKTFAY 80 (605)
Q Consensus 56 aIp~~l~gkd--vlv~a~TGsGKT~a~ 80 (605)
.|..+++|.+ +++.+.||||||...
T Consensus 86 lv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 4455678876 789999999999864
No 262
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=59.85 E-value=12 Score=31.70 Aligned_cols=36 Identities=11% Similarity=0.115 Sum_probs=31.5
Q ss_pred CeEEEEe-cchhHHHHHHHHHHHcCCcEEEEcCCCCH
Q 007402 284 KKALIFT-NTIDMAFRLKLFLEKFGIKSAILNAELPQ 319 (605)
Q Consensus 284 ~k~IIFv-~s~~~~~~L~~~L~~~gi~~~~l~~~l~~ 319 (605)
.++||+| .+-.++......|...|+++..|.|++..
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKA 126 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHH
Confidence 6899999 58888999999999999999999998753
No 263
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=59.75 E-value=6.3 Score=43.90 Aligned_cols=66 Identities=18% Similarity=0.289 Sum_probs=48.4
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCccc
Q 007402 99 APAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSF 178 (605)
Q Consensus 99 ~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~ 178 (605)
+.++||.|||++-++++++.+... ++.+..++|+.+... ......+|||+| +.+..+ ++
T Consensus 396 ~~~vLVFv~Tr~~ae~la~~L~~~--------g~~v~~lHG~l~q~e---r~~~~~~VLVAT-----dVaerG-----ID 454 (666)
T 3o8b_A 396 GGRHLIFCHSKKKCDELAAKLSGL--------GINAVAYYRGLDVSV---IPTIGDVVVVAT-----DALMTG-----YT 454 (666)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHTT--------TCCEEEECTTSCGGG---SCSSSCEEEEEC-----TTHHHH-----CC
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhC--------CCcEEEecCCCCHHH---HHhCCCcEEEEC-----ChHHcc-----CC
Confidence 568999999999999998887753 678889999887543 233556999999 344455 44
Q ss_pred CCCceEEE
Q 007402 179 SDSLKILV 186 (605)
Q Consensus 179 l~~l~~lV 186 (605)
+. +++||
T Consensus 455 Id-V~~VI 461 (666)
T 3o8b_A 455 GD-FDSVI 461 (666)
T ss_dssp CC-BSEEE
T ss_pred CC-CcEEE
Confidence 44 66555
No 264
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=59.64 E-value=6.1 Score=40.51 Aligned_cols=25 Identities=28% Similarity=0.626 Sum_probs=20.0
Q ss_pred HHHHHhCCCc--EEEEcCCCchHHHHH
Q 007402 56 SIPLILEGKD--VVARAKTGSGKTFAY 80 (605)
Q Consensus 56 aIp~~l~gkd--vlv~a~TGsGKT~a~ 80 (605)
.|..+++|.+ |++.+.||||||...
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceEe
Confidence 4556778976 789999999999753
No 265
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=59.54 E-value=6 Score=41.32 Aligned_cols=25 Identities=40% Similarity=0.557 Sum_probs=20.0
Q ss_pred HHHHHhCCCc--EEEEcCCCchHHHHH
Q 007402 56 SIPLILEGKD--VVARAKTGSGKTFAY 80 (605)
Q Consensus 56 aIp~~l~gkd--vlv~a~TGsGKT~a~ 80 (605)
.|..+++|.+ +++.|.||||||...
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeEe
Confidence 4556778875 789999999999864
No 266
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=59.47 E-value=17 Score=34.27 Aligned_cols=57 Identities=12% Similarity=0.188 Sum_probs=36.9
Q ss_pred CCeEEEEecchhHHHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 007402 283 QKKALIFTNTIDMAFRLKLFLEKF----GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 342 (605)
Q Consensus 283 ~~k~IIFv~s~~~~~~L~~~L~~~----gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~ 342 (605)
..++||.++++..+..+...++.+ ++.+..++|+..... ..+.+..+..+|+|+|..
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~ 158 (237)
T 3bor_A 98 ETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPG 158 (237)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHH
T ss_pred CceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHH
Confidence 458999999999999988888776 567788888765433 234556677899999954
No 267
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=59.47 E-value=6.4 Score=40.15 Aligned_cols=25 Identities=40% Similarity=0.618 Sum_probs=19.9
Q ss_pred HHHHHhCCCc--EEEEcCCCchHHHHH
Q 007402 56 SIPLILEGKD--VVARAKTGSGKTFAY 80 (605)
Q Consensus 56 aIp~~l~gkd--vlv~a~TGsGKT~a~ 80 (605)
.|..+++|.+ +++.+.||||||...
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEee
Confidence 4456778876 789999999999864
No 268
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=59.38 E-value=6.4 Score=40.49 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=19.8
Q ss_pred HHHHHhCCCc--EEEEcCCCchHHHHH
Q 007402 56 SIPLILEGKD--VVARAKTGSGKTFAY 80 (605)
Q Consensus 56 aIp~~l~gkd--vlv~a~TGsGKT~a~ 80 (605)
.|..++.|.+ +++.+.||||||...
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceEEEeecCCCCCCceEE
Confidence 3455778876 789999999999863
No 269
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=59.37 E-value=6.5 Score=39.85 Aligned_cols=26 Identities=31% Similarity=0.579 Sum_probs=21.2
Q ss_pred HHHHHHhCCCc--EEEEcCCCchHHHHH
Q 007402 55 ASIPLILEGKD--VVARAKTGSGKTFAY 80 (605)
Q Consensus 55 ~aIp~~l~gkd--vlv~a~TGsGKT~a~ 80 (605)
..+..+++|.+ +++.+.||||||...
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 35667789976 789999999999754
No 270
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=59.25 E-value=6.5 Score=40.19 Aligned_cols=25 Identities=40% Similarity=0.647 Sum_probs=19.7
Q ss_pred HHHHHhCCCc--EEEEcCCCchHHHHH
Q 007402 56 SIPLILEGKD--VVARAKTGSGKTFAY 80 (605)
Q Consensus 56 aIp~~l~gkd--vlv~a~TGsGKT~a~ 80 (605)
.|..+++|.+ +++.+.||||||...
T Consensus 81 lv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 81 LIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 3455678876 789999999999753
No 271
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=59.22 E-value=6.3 Score=40.27 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=19.9
Q ss_pred HHHHHhCCCc--EEEEcCCCchHHHHH
Q 007402 56 SIPLILEGKD--VVARAKTGSGKTFAY 80 (605)
Q Consensus 56 aIp~~l~gkd--vlv~a~TGsGKT~a~ 80 (605)
.|..+++|.+ +++.+.||||||...
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEE
Confidence 4556778876 789999999999754
No 272
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=59.04 E-value=6.3 Score=40.61 Aligned_cols=25 Identities=32% Similarity=0.623 Sum_probs=19.7
Q ss_pred HHHHHhCCCc--EEEEcCCCchHHHHH
Q 007402 56 SIPLILEGKD--VVARAKTGSGKTFAY 80 (605)
Q Consensus 56 aIp~~l~gkd--vlv~a~TGsGKT~a~ 80 (605)
.|..+++|.+ +++.+.||||||...
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 4455778876 789999999999753
No 273
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=59.03 E-value=6.3 Score=40.35 Aligned_cols=25 Identities=28% Similarity=0.565 Sum_probs=20.1
Q ss_pred HHHHHhCCCc--EEEEcCCCchHHHHH
Q 007402 56 SIPLILEGKD--VVARAKTGSGKTFAY 80 (605)
Q Consensus 56 aIp~~l~gkd--vlv~a~TGsGKT~a~ 80 (605)
.|..+++|.+ |++-+.||||||...
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 4556778976 789999999999864
No 274
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=58.92 E-value=6.5 Score=40.43 Aligned_cols=25 Identities=28% Similarity=0.582 Sum_probs=19.8
Q ss_pred HHHHHhCCCc--EEEEcCCCchHHHHH
Q 007402 56 SIPLILEGKD--VVARAKTGSGKTFAY 80 (605)
Q Consensus 56 aIp~~l~gkd--vlv~a~TGsGKT~a~ 80 (605)
.+..+++|.+ +++.+.||||||...
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 4456678876 789999999999753
No 275
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=58.79 E-value=14 Score=39.29 Aligned_cols=56 Identities=16% Similarity=0.238 Sum_probs=43.0
Q ss_pred CCeEEEEecchhHHHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 007402 283 QKKALIFTNTIDMAFRLKLFLEKF----GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 342 (605)
Q Consensus 283 ~~k~IIFv~s~~~~~~L~~~L~~~----gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~ 342 (605)
.+++||.|+++..+......+..+ ++.+..++|+.+...+...+. +..+|+|+|..
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~ 111 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQ 111 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHH
Confidence 678999999999888877777665 899999999997665432221 23789999975
No 276
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=58.69 E-value=5.2 Score=36.24 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=16.1
Q ss_pred hCCCcEEEEcCCCchHHHH
Q 007402 61 LEGKDVVARAKTGSGKTFA 79 (605)
Q Consensus 61 l~gkdvlv~a~TGsGKT~a 79 (605)
+.|+-+++.||+|||||..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CCCCEEEEECCTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3577789999999999983
No 277
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=58.68 E-value=4.8 Score=40.91 Aligned_cols=16 Identities=38% Similarity=0.399 Sum_probs=13.9
Q ss_pred CcEEEEcCCCchHHHH
Q 007402 64 KDVVARAKTGSGKTFA 79 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a 79 (605)
+-+++.||||||||..
T Consensus 41 ~lIvI~GPTgsGKTtL 56 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRL 56 (339)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 4689999999999974
No 278
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=58.56 E-value=6.4 Score=40.31 Aligned_cols=25 Identities=36% Similarity=0.648 Sum_probs=19.5
Q ss_pred HHHHHhCCCc--EEEEcCCCchHHHHH
Q 007402 56 SIPLILEGKD--VVARAKTGSGKTFAY 80 (605)
Q Consensus 56 aIp~~l~gkd--vlv~a~TGsGKT~a~ 80 (605)
.|..++.|.+ +++.+.||||||...
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 72 TVDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCcceEEEECCCCCCcceEe
Confidence 3445678876 789999999999753
No 279
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=58.42 E-value=19 Score=40.85 Aligned_cols=56 Identities=13% Similarity=0.124 Sum_probs=40.2
Q ss_pred CCeEEEEecchhHHHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 007402 283 QKKALIFTNTIDMAFRLKLFLEKF----GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 342 (605)
Q Consensus 283 ~~k~IIFv~s~~~~~~L~~~L~~~----gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~ 342 (605)
.+++||.|+++..+......+..+ ++.++.++|+.+...+...+ . +..+|+|+|..
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~---~-~~~~Ivv~Tp~ 355 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKV---I-EDSDIIVVTPQ 355 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHH---H-HTCSEEEECHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHh---h-CCCCEEEEchH
Confidence 678999999999988877777665 89999999999766543222 1 25799999965
No 280
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=58.14 E-value=6.5 Score=40.26 Aligned_cols=25 Identities=36% Similarity=0.525 Sum_probs=19.8
Q ss_pred HHHHHhCCCc--EEEEcCCCchHHHHH
Q 007402 56 SIPLILEGKD--VVARAKTGSGKTFAY 80 (605)
Q Consensus 56 aIp~~l~gkd--vlv~a~TGsGKT~a~ 80 (605)
.+..+++|.+ +++.+.||||||...
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceeee
Confidence 4455678876 789999999999853
No 281
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=58.08 E-value=4.2 Score=40.93 Aligned_cols=16 Identities=38% Similarity=0.239 Sum_probs=13.4
Q ss_pred CcEEEEcCCCchHHHH
Q 007402 64 KDVVARAKTGSGKTFA 79 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a 79 (605)
+-+++.||||||||..
T Consensus 4 ~~i~i~GptgsGKt~l 19 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKT 19 (322)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred cEEEEECCCcCCHHHH
Confidence 3478999999999974
No 282
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=57.83 E-value=5.8 Score=40.54 Aligned_cols=25 Identities=36% Similarity=0.603 Sum_probs=20.9
Q ss_pred HHHHHhCCCc--EEEEcCCCchHHHHH
Q 007402 56 SIPLILEGKD--VVARAKTGSGKTFAY 80 (605)
Q Consensus 56 aIp~~l~gkd--vlv~a~TGsGKT~a~ 80 (605)
.|..+++|.+ +++.+.||||||...
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 6677788976 789999999999865
No 283
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=57.80 E-value=6.3 Score=40.42 Aligned_cols=25 Identities=32% Similarity=0.590 Sum_probs=19.9
Q ss_pred HHHHHhCCCc--EEEEcCCCchHHHHH
Q 007402 56 SIPLILEGKD--VVARAKTGSGKTFAY 80 (605)
Q Consensus 56 aIp~~l~gkd--vlv~a~TGsGKT~a~ 80 (605)
.|..++.|.+ +++.+.||||||...
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 4556778876 789999999999753
No 284
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=57.74 E-value=45 Score=32.36 Aligned_cols=95 Identities=8% Similarity=0.077 Sum_probs=59.5
Q ss_pred CCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHH
Q 007402 71 KTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL 150 (605)
Q Consensus 71 ~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l 150 (605)
...+||..+ +.-++..+.. .+.++||.+.++..+..+...+.... ++.+..++|+++.......+
T Consensus 92 ~~~s~K~~~-L~~ll~~~~~-------~~~kvlIFs~~~~~~~~l~~~L~~~~-------g~~~~~l~G~~~~~~R~~~i 156 (271)
T 1z5z_A 92 VRRSGKMIR-TMEIIEEALD-------EGDKIAIFTQFVDMGKIIRNIIEKEL-------NTEVPFLYGELSKKERDDII 156 (271)
T ss_dssp STTCHHHHH-HHHHHHHHHH-------TTCCEEEEESCHHHHHHHHHHHHHHH-------CSCCCEECTTSCHHHHHHHH
T ss_pred cccCHHHHH-HHHHHHHHHh-------CCCeEEEEeccHHHHHHHHHHHHHhc-------CCcEEEEECCCCHHHHHHHH
Confidence 456888764 4455555443 25679999999998888887776532 56777889998865544433
Q ss_pred ---c-C-CCc-EEEECCchHHHHHhcCCCCCcccCCCceEEEEeCc
Q 007402 151 ---A-G-PPD-IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEA 190 (605)
Q Consensus 151 ---~-~-~~d-IvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEa 190 (605)
. + ... ++++|- .... .+.+...+++|+=+.
T Consensus 157 ~~F~~~~~~~v~L~st~-----~~g~-----Glnl~~a~~VI~~d~ 192 (271)
T 1z5z_A 157 SKFQNNPSVKFIVLSVK-----AGGF-----GINLTSANRVIHFDR 192 (271)
T ss_dssp HHHHHCTTCCEEEEECC-----TTCC-----CCCCTTCSEEEECSC
T ss_pred HHhcCCCCCCEEEEehh-----hhcC-----CcCcccCCEEEEECC
Confidence 2 2 345 566662 1222 366677777765433
No 285
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=57.66 E-value=6.3 Score=41.23 Aligned_cols=26 Identities=38% Similarity=0.608 Sum_probs=21.5
Q ss_pred HHHHHHhCCCc--EEEEcCCCchHHHHH
Q 007402 55 ASIPLILEGKD--VVARAKTGSGKTFAY 80 (605)
Q Consensus 55 ~aIp~~l~gkd--vlv~a~TGsGKT~a~ 80 (605)
..|..++.|.+ |++.|.||||||...
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 36777889976 789999999999864
No 286
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=57.43 E-value=5.8 Score=40.83 Aligned_cols=25 Identities=36% Similarity=0.606 Sum_probs=20.6
Q ss_pred HHHHHhCCCc--EEEEcCCCchHHHHH
Q 007402 56 SIPLILEGKD--VVARAKTGSGKTFAY 80 (605)
Q Consensus 56 aIp~~l~gkd--vlv~a~TGsGKT~a~ 80 (605)
.+..++.|.+ +++.+.||||||...
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 5667789976 789999999999764
No 287
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=57.36 E-value=36 Score=32.15 Aligned_cols=55 Identities=22% Similarity=0.270 Sum_probs=42.1
Q ss_pred CeEEEEecchhHHHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 007402 284 KKALIFTNTIDMAFRLKLFLEKF----GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 342 (605)
Q Consensus 284 ~k~IIFv~s~~~~~~L~~~L~~~----gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~ 342 (605)
.++||.|++++.+..+...+..+ ++.++.++|+.+....... + ....+|+|+|..
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~Ivv~Tp~ 159 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIRE---V-QMGCHLLVATPG 159 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHH---H-SSCCSEEEECHH
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH---h-CCCCCEEEECHH
Confidence 58999999999998888777665 5788889998876554322 2 346899999975
No 288
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=57.25 E-value=4.5 Score=40.67 Aligned_cols=15 Identities=33% Similarity=0.310 Sum_probs=13.0
Q ss_pred cEEEEcCCCchHHHH
Q 007402 65 DVVARAKTGSGKTFA 79 (605)
Q Consensus 65 dvlv~a~TGsGKT~a 79 (605)
-+++.+|||||||..
T Consensus 12 ~i~i~GptgsGKt~l 26 (316)
T 3foz_A 12 AIFLMGPTASGKTAL 26 (316)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCccCHHHH
Confidence 378999999999974
No 289
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=57.21 E-value=23 Score=38.57 Aligned_cols=82 Identities=17% Similarity=0.133 Sum_probs=51.2
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHH--HHHHHcC-C---CcEEEECCchHHHHHhcCC
Q 007402 99 APAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASD--LRAALAG-P---PDIVIATPGCMPKCLSTGV 172 (605)
Q Consensus 99 ~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~--~~~~l~~-~---~dIvV~TP~~l~~~l~~~~ 172 (605)
+.++||.|++++-|..+++.+............-.+..++|...... ....+.. . +-|+||| +.+..|
T Consensus 439 ~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~~~~~~~~ilvtt-----~~l~~G- 512 (590)
T 3h1t_A 439 FAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTS-----QLLTTG- 512 (590)
T ss_dssp TSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEES-----STTTTT-
T ss_pred CccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhCCCCCCCEEEEEC-----ChhhcC-
Confidence 57899999999999999999987644221101222556677764311 1122222 2 2377777 344444
Q ss_pred CCCcccCCCceEEEEeCc
Q 007402 173 LQSKSFSDSLKILVLDEA 190 (605)
Q Consensus 173 ~~~~~~l~~l~~lViDEa 190 (605)
+++..+.+||++..
T Consensus 513 ----iDip~v~~Vi~~~~ 526 (590)
T 3h1t_A 513 ----VDAPTCKNVVLARV 526 (590)
T ss_dssp ----CCCTTEEEEEEESC
T ss_pred ----ccchheeEEEEEec
Confidence 78888999998765
No 290
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=57.09 E-value=17 Score=38.76 Aligned_cols=56 Identities=13% Similarity=0.124 Sum_probs=39.8
Q ss_pred CCeEEEEecchhHHHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 007402 283 QKKALIFTNTIDMAFRLKLFLEKF----GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 342 (605)
Q Consensus 283 ~~k~IIFv~s~~~~~~L~~~L~~~----gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~ 342 (605)
.+++||.|+++..+......+..+ ++.+..++|+.+...+...+ . ...+|+|+|..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~-~~~~i~v~T~~ 114 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKV---I-EDSDIIVVTPQ 114 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHH---H-HHCSEEEECHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHh---h-CCCCEEEECHH
Confidence 568999999999888887777765 89999999998766543222 1 13789999975
No 291
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=56.74 E-value=10 Score=30.23 Aligned_cols=35 Identities=20% Similarity=0.230 Sum_probs=31.4
Q ss_pred CeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCC
Q 007402 284 KKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELP 318 (605)
Q Consensus 284 ~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~ 318 (605)
.+++++|.+-.++......|.+.|+.+..|.|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 67999999999999999999999999888888864
No 292
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=56.60 E-value=4.8 Score=37.76 Aligned_cols=18 Identities=28% Similarity=0.412 Sum_probs=15.0
Q ss_pred CCCcEEEEcCCCchHHHH
Q 007402 62 EGKDVVARAKTGSGKTFA 79 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a 79 (605)
.|+-+++.+|||+|||..
T Consensus 33 ~g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSET 50 (205)
T ss_dssp TTEEEEEECCCTTTTHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 356789999999999863
No 293
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=56.46 E-value=7.1 Score=40.45 Aligned_cols=25 Identities=40% Similarity=0.557 Sum_probs=20.2
Q ss_pred HHHHHhCCCc--EEEEcCCCchHHHHH
Q 007402 56 SIPLILEGKD--VVARAKTGSGKTFAY 80 (605)
Q Consensus 56 aIp~~l~gkd--vlv~a~TGsGKT~a~ 80 (605)
.|..+++|.+ +++.+.||||||...
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEe
Confidence 4556778875 789999999999864
No 294
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=56.11 E-value=7.1 Score=40.02 Aligned_cols=19 Identities=37% Similarity=0.471 Sum_probs=17.0
Q ss_pred HhCCCcEEEEcCCCchHHH
Q 007402 60 ILEGKDVVARAKTGSGKTF 78 (605)
Q Consensus 60 ~l~gkdvlv~a~TGsGKT~ 78 (605)
+..|..+++.+|||||||.
T Consensus 172 i~~G~~i~ivG~sGsGKST 190 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTT 190 (361)
T ss_dssp HHTTCCEEEEESSSSCHHH
T ss_pred HhcCCEEEEECCCCCCHHH
Confidence 4478899999999999997
No 295
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=56.07 E-value=2.4 Score=41.49 Aligned_cols=52 Identities=15% Similarity=0.112 Sum_probs=31.6
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCChHHH-HHHHHHHh--CCCcEEEEcCCCchHHHH
Q 007402 24 EEKSFEELGLDLRLVHALNKKGIQKPTLIQ-QASIPLIL--EGKDVVARAKTGSGKTFA 79 (605)
Q Consensus 24 ~~~~f~~~~L~~~l~~al~~~g~~~pt~iQ-~~aIp~~l--~gkdvlv~a~TGsGKT~a 79 (605)
+..+|+++...+.+.+.+..+-.. +. ..++..+- -.+.+++.+|+|+|||..
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~----~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl 89 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF----LKNPSRFHEMGARIPKGVLLVGPPGVGKTHL 89 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH----HHCHHHHHHTTCCCCCEEEEECCTTSSHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH----HHCHHHHHHcCCCCCCeEEEECCCcChHHHH
Confidence 567899998777776666654210 11 11121110 123599999999999973
No 296
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=56.04 E-value=5.9 Score=40.46 Aligned_cols=25 Identities=40% Similarity=0.628 Sum_probs=20.4
Q ss_pred HHHHHhCCCc--EEEEcCCCchHHHHH
Q 007402 56 SIPLILEGKD--VVARAKTGSGKTFAY 80 (605)
Q Consensus 56 aIp~~l~gkd--vlv~a~TGsGKT~a~ 80 (605)
.|..+++|.+ +++.+.||||||...
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 5566778876 789999999999864
No 297
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=56.04 E-value=44 Score=33.18 Aligned_cols=17 Identities=24% Similarity=0.268 Sum_probs=13.8
Q ss_pred cEEEEcCCCchHHHHHH
Q 007402 65 DVVARAKTGSGKTFAYL 81 (605)
Q Consensus 65 dvlv~a~TGsGKT~a~~ 81 (605)
-+++.+++|+|||....
T Consensus 106 vi~ivG~~GsGKTTl~~ 122 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCG 122 (306)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEcCCCChHHHHHH
Confidence 47799999999997543
No 298
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=56.01 E-value=6.8 Score=40.40 Aligned_cols=25 Identities=40% Similarity=0.569 Sum_probs=19.5
Q ss_pred HHHHHhCCCc--EEEEcCCCchHHHHH
Q 007402 56 SIPLILEGKD--VVARAKTGSGKTFAY 80 (605)
Q Consensus 56 aIp~~l~gkd--vlv~a~TGsGKT~a~ 80 (605)
.|..+++|.+ +++.+.||||||...
T Consensus 92 lv~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 92 LIEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEeecCCCCCcceec
Confidence 3445678876 789999999999753
No 299
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=55.86 E-value=40 Score=36.09 Aligned_cols=17 Identities=29% Similarity=0.253 Sum_probs=13.9
Q ss_pred cEEEEcCCCchHHHHHH
Q 007402 65 DVVARAKTGSGKTFAYL 81 (605)
Q Consensus 65 dvlv~a~TGsGKT~a~~ 81 (605)
.+++.+++|+|||....
T Consensus 103 vI~ivG~~GvGKTTl~~ 119 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCS 119 (504)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47789999999998543
No 300
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=55.59 E-value=5.3 Score=36.81 Aligned_cols=19 Identities=21% Similarity=0.120 Sum_probs=16.4
Q ss_pred CCCcEEEEcCCCchHHHHH
Q 007402 62 EGKDVVARAKTGSGKTFAY 80 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a~ 80 (605)
.++.+++.|++|||||...
T Consensus 24 ~~~~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLG 42 (199)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 5678999999999999853
No 301
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=55.38 E-value=1.6e+02 Score=28.81 Aligned_cols=51 Identities=22% Similarity=0.281 Sum_probs=34.0
Q ss_pred EEEEeCcchh-ccCCcHHHHHHHHhhCCCCceEEEEeeecChhHHHHHHHhc
Q 007402 184 ILVLDEADLL-LSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLIL 234 (605)
Q Consensus 184 ~lViDEad~i-~~~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l 234 (605)
++|+-=+|++ ........+..+...+.....++.+||.-...++.+.....
T Consensus 126 ilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~ 177 (308)
T 3iev_A 126 IVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTIL 177 (308)
T ss_dssp EEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHH
T ss_pred EEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHH
Confidence 4555555554 23334566677777775567899999998888877766543
No 302
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=55.20 E-value=5.4 Score=36.02 Aligned_cols=18 Identities=22% Similarity=0.139 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCchHHHHH
Q 007402 63 GKDVVARAKTGSGKTFAY 80 (605)
Q Consensus 63 gkdvlv~a~TGsGKT~a~ 80 (605)
++.+++.|++|||||...
T Consensus 5 ~~~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVG 22 (185)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 567999999999999854
No 303
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=55.14 E-value=19 Score=36.71 Aligned_cols=18 Identities=33% Similarity=0.466 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCchHHHHH
Q 007402 63 GKDVVARAKTGSGKTFAY 80 (605)
Q Consensus 63 gkdvlv~a~TGsGKT~a~ 80 (605)
...+++.||+|+|||..+
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 467999999999999743
No 304
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=55.12 E-value=11 Score=35.06 Aligned_cols=56 Identities=18% Similarity=0.090 Sum_probs=40.6
Q ss_pred CCeEEEEecchhHHHHHHHHHHHc--------CCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 007402 283 QKKALIFTNTIDMAFRLKLFLEKF--------GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 342 (605)
Q Consensus 283 ~~k~IIFv~s~~~~~~L~~~L~~~--------gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~ 342 (605)
..++||.|+++..+..+...++.+ ++.+..++|+.+...... .+ .+..+|+|+|..
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~Iiv~Tp~ 135 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALE---KL-NVQPHIVIGTPG 135 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTC---CC-SSCCSEEEECHH
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHH---Hc-CCCCCEEEeCHH
Confidence 458999999999988888777654 678888999875443211 11 245789999964
No 305
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=55.12 E-value=7.5 Score=38.72 Aligned_cols=18 Identities=22% Similarity=0.506 Sum_probs=15.6
Q ss_pred CCCcEEEEcCCCchHHHH
Q 007402 62 EGKDVVARAKTGSGKTFA 79 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a 79 (605)
....+++.+++|+|||..
T Consensus 24 ~~~~vLi~Ge~GtGKt~l 41 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELV 41 (304)
T ss_dssp TTSCEEEESCTTSCHHHH
T ss_pred CCCcEEEECCCCchHHHH
Confidence 457899999999999974
No 306
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=55.08 E-value=5 Score=39.43 Aligned_cols=52 Identities=19% Similarity=0.258 Sum_probs=31.4
Q ss_pred cccCcccCCCCHHHHHHHHHCC-C--CCChHHHHHHHHHHhCCCcEEEEcCCCchHHHH
Q 007402 24 EEKSFEELGLDLRLVHALNKKG-I--QKPTLIQQASIPLILEGKDVVARAKTGSGKTFA 79 (605)
Q Consensus 24 ~~~~f~~~~L~~~l~~al~~~g-~--~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a 79 (605)
+..+|+++.=.+.+.+.|...- + ..|..+. .....++.+++.||+|+|||..
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~----~~~~~~~~vll~Gp~GtGKT~l 70 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMVILPSVRPELFT----GLRAPAKGLLLFGPPGNGKTLL 70 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSC----GGGCCCSEEEEESSSSSCHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHh----cCCCCCCeEEEECcCCCCHHHH
Confidence 4568998876677766666431 0 0010000 0111357899999999999974
No 307
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=54.94 E-value=16 Score=36.35 Aligned_cols=49 Identities=12% Similarity=0.023 Sum_probs=28.7
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHH
Q 007402 63 GKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVM 120 (605)
Q Consensus 63 gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~ 120 (605)
|.=+++.|++|+|||.. ++-++..+... +..++++.-- +-..|+...+.
T Consensus 68 G~l~li~G~pG~GKTtl-~l~ia~~~a~~-------g~~vl~~slE-~s~~~l~~R~~ 116 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAF-ALKQAKNMSDN-------DDVVNLHSLE-MGKKENIKRLI 116 (315)
T ss_dssp TCEEEEECCTTSSHHHH-HHHHHHHHHTT-------TCEEEEEESS-SCHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHH-HHHHHHHHHHc-------CCeEEEEECC-CCHHHHHHHHH
Confidence 45689999999999964 44444333321 3457777632 23344444443
No 308
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=54.87 E-value=53 Score=27.02 Aligned_cols=52 Identities=17% Similarity=0.294 Sum_probs=43.9
Q ss_pred EEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEE
Q 007402 286 ALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYL 337 (605)
Q Consensus 286 ~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iL 337 (605)
.+||....+-...+...+...|.++..|.++.....|..-+++|.+..+++-
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdvr 56 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDVR 56 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEEE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCcee
Confidence 4678888877777888888899999999999999999999999988766654
No 309
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=54.67 E-value=7.9 Score=31.46 Aligned_cols=36 Identities=14% Similarity=0.116 Sum_probs=32.0
Q ss_pred CCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCC
Q 007402 283 QKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELP 318 (605)
Q Consensus 283 ~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~ 318 (605)
..++++||.+-.++......|...|+++..|.|++.
T Consensus 56 ~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 56 NEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 568999999999999999999999999999988763
No 310
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=54.61 E-value=8.3 Score=40.71 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=19.7
Q ss_pred HHHHHhCCCc--EEEEcCCCchHHHHH
Q 007402 56 SIPLILEGKD--VVARAKTGSGKTFAY 80 (605)
Q Consensus 56 aIp~~l~gkd--vlv~a~TGsGKT~a~ 80 (605)
.|..++.|.+ |++.+.||||||...
T Consensus 128 lv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 128 FLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 3445678876 789999999999764
No 311
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=54.53 E-value=8.9 Score=30.95 Aligned_cols=36 Identities=11% Similarity=0.214 Sum_probs=32.1
Q ss_pred CCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCC
Q 007402 283 QKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELP 318 (605)
Q Consensus 283 ~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~ 318 (605)
..++++||.+-.++......|.+.|+++..+.|++.
T Consensus 56 ~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 56 NETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 568999999999999999999999999999988763
No 312
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=54.49 E-value=5 Score=40.72 Aligned_cols=17 Identities=29% Similarity=0.460 Sum_probs=14.9
Q ss_pred CcEEEEcCCCchHHHHH
Q 007402 64 KDVVARAKTGSGKTFAY 80 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a~ 80 (605)
+.+++.||+|+|||...
T Consensus 71 ~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp CEEEEEESTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 57999999999999853
No 313
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=53.95 E-value=7.2 Score=40.42 Aligned_cols=23 Identities=43% Similarity=0.673 Sum_probs=18.6
Q ss_pred HHHhCCCc--EEEEcCCCchHHHHH
Q 007402 58 PLILEGKD--VVARAKTGSGKTFAY 80 (605)
Q Consensus 58 p~~l~gkd--vlv~a~TGsGKT~a~ 80 (605)
..+++|.+ +++.+.||||||...
T Consensus 92 ~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 92 RHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HHhhcCceeeEeeecCCCCCCCeEe
Confidence 45678876 789999999999754
No 314
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=53.88 E-value=8.3 Score=35.57 Aligned_cols=18 Identities=28% Similarity=0.409 Sum_probs=14.6
Q ss_pred CCCcEEEEcCCCchHHHH
Q 007402 62 EGKDVVARAKTGSGKTFA 79 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a 79 (605)
.|+-+.+.||+|+|||..
T Consensus 3 ~g~~i~lvGpsGaGKSTL 20 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTL 20 (198)
T ss_dssp --CCEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467899999999999984
No 315
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=53.73 E-value=5.5 Score=35.13 Aligned_cols=16 Identities=25% Similarity=0.250 Sum_probs=13.5
Q ss_pred cEEEEcCCCchHHHHH
Q 007402 65 DVVARAKTGSGKTFAY 80 (605)
Q Consensus 65 dvlv~a~TGsGKT~a~ 80 (605)
-+++.|++|||||...
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999843
No 316
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=53.59 E-value=7.4 Score=36.17 Aligned_cols=18 Identities=28% Similarity=0.364 Sum_probs=15.4
Q ss_pred CCCcEEEEcCCCchHHHH
Q 007402 62 EGKDVVARAKTGSGKTFA 79 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a 79 (605)
.|+-+++.||+|+|||..
T Consensus 7 ~g~~i~l~GpsGsGKsTl 24 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTV 24 (208)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 466789999999999984
No 317
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=53.58 E-value=6.7 Score=40.40 Aligned_cols=19 Identities=26% Similarity=0.284 Sum_probs=16.0
Q ss_pred hCCCcEEEEcCCCchHHHH
Q 007402 61 LEGKDVVARAKTGSGKTFA 79 (605)
Q Consensus 61 l~gkdvlv~a~TGsGKT~a 79 (605)
..|.-+++.+|||||||..
T Consensus 134 ~~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp SSSEEEEEECSSSSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3567799999999999973
No 318
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=53.51 E-value=4.2 Score=40.87 Aligned_cols=17 Identities=29% Similarity=0.335 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCchHHHH
Q 007402 63 GKDVVARAKTGSGKTFA 79 (605)
Q Consensus 63 gkdvlv~a~TGsGKT~a 79 (605)
...+++.||+|+|||..
T Consensus 45 ~~~vLl~G~~GtGKT~l 61 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTA 61 (350)
T ss_dssp GCCEEEECCGGGCTTHH
T ss_pred CceEEEECCCCccHHHH
Confidence 45799999999999974
No 319
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=53.25 E-value=15 Score=36.30 Aligned_cols=51 Identities=16% Similarity=0.123 Sum_probs=38.5
Q ss_pred eEEEEecchhHHHHHHHHHHHc-----CCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 007402 285 KALIFTNTIDMAFRLKLFLEKF-----GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 342 (605)
Q Consensus 285 k~IIFv~s~~~~~~L~~~L~~~-----gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~ 342 (605)
++||.++++..|..+...++.+ ++.+..+.++...... .....+|+|+|..
T Consensus 164 ~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~ 219 (300)
T 3fmo_B 164 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPG 219 (300)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHH
T ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHH
Confidence 7999999999999988888765 4677777777654322 1456789999975
No 320
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=52.36 E-value=7.4 Score=39.83 Aligned_cols=18 Identities=33% Similarity=0.361 Sum_probs=15.1
Q ss_pred CCCcEEEEcCCCchHHHH
Q 007402 62 EGKDVVARAKTGSGKTFA 79 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a 79 (605)
.+.-+++.+|||||||..
T Consensus 122 ~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 455789999999999973
No 321
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=52.26 E-value=6.3 Score=39.85 Aligned_cols=19 Identities=53% Similarity=0.655 Sum_probs=16.8
Q ss_pred HhCCCcEEEEcCCCchHHH
Q 007402 60 ILEGKDVVARAKTGSGKTF 78 (605)
Q Consensus 60 ~l~gkdvlv~a~TGsGKT~ 78 (605)
+..|+.+++.+|||||||.
T Consensus 168 i~~g~~v~i~G~~GsGKTT 186 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTT 186 (330)
T ss_dssp HHHTCCEEEEESTTSCHHH
T ss_pred ccCCCEEEEECCCCCCHHH
Confidence 3468899999999999997
No 322
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=52.14 E-value=37 Score=37.88 Aligned_cols=79 Identities=10% Similarity=0.135 Sum_probs=52.7
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHHHH--------------hc--------------CCcceEEEEEeCCCCHHHHHHHH
Q 007402 99 APAALVLVPTRELCQQVYSEVMALIEL--------------CK--------------GQVQLKVVQLTSSMPASDLRAAL 150 (605)
Q Consensus 99 ~~~~LilvPtreLa~Qv~~~~~~l~~~--------------~~--------------~~~~i~v~~l~~~~~~~~~~~~l 150 (605)
+..+||.||++.-+..++..+...... .. ......+..++++.+...+....
T Consensus 252 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~ 331 (715)
T 2va8_A 252 NGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIE 331 (715)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHH
Confidence 467999999999999998888753210 00 00012477789999887665444
Q ss_pred c----CCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEE
Q 007402 151 A----GPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVL 187 (605)
Q Consensus 151 ~----~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lVi 187 (605)
. +...||||| +.+..| +++..+.+||-
T Consensus 332 ~~f~~g~~~vlvaT-----~~l~~G-----idip~~~~VI~ 362 (715)
T 2va8_A 332 EGFRQRKIKVIVAT-----PTLAAG-----VNLPARTVIIG 362 (715)
T ss_dssp HHHHTTCSCEEEEC-----GGGGGS-----SCCCBSEEEEC
T ss_pred HHHHcCCCeEEEEC-----hHHhcc-----cCCCceEEEEe
Confidence 3 678999999 344455 66777776553
No 323
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=52.07 E-value=12 Score=49.04 Aligned_cols=70 Identities=14% Similarity=0.225 Sum_probs=42.8
Q ss_pred CCHHHHHHHHHCCCCCChHHH-HHHHHH---HhCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCc
Q 007402 33 LDLRLVHALNKKGIQKPTLIQ-QASIPL---ILEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPT 108 (605)
Q Consensus 33 L~~~l~~al~~~g~~~pt~iQ-~~aIp~---~l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPt 108 (605)
|...|.+++.++|+. |++.| .++|.+ +...+.+++.||||||||.++- ++...+.... .......+|-|-
T Consensus 873 l~~ai~~~~~~~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~--~L~~al~~l~---~~~~~~~~iNPK 946 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE--VYLEAIEQVD---NIKSEAHVMDPK 946 (3245)
T ss_dssp HHHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH--HHHHHHTTTT---TCEEEEEEECTT
T ss_pred HHHHHHHHHHHcCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH--HHHHHHHHhh---CCCceEEEECCC
Confidence 345677778888985 55544 555543 3345679999999999999764 3344443211 112345566664
No 324
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=51.94 E-value=8.1 Score=39.87 Aligned_cols=25 Identities=40% Similarity=0.603 Sum_probs=20.1
Q ss_pred HHHHHhCCCc--EEEEcCCCchHHHHH
Q 007402 56 SIPLILEGKD--VVARAKTGSGKTFAY 80 (605)
Q Consensus 56 aIp~~l~gkd--vlv~a~TGsGKT~a~ 80 (605)
.|..+++|.+ |++-+.||||||...
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 4566778876 789999999999753
No 325
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=51.76 E-value=5.9 Score=38.26 Aligned_cols=14 Identities=36% Similarity=0.166 Sum_probs=12.5
Q ss_pred EEEEcCCCchHHHH
Q 007402 66 VVARAKTGSGKTFA 79 (605)
Q Consensus 66 vlv~a~TGsGKT~a 79 (605)
+++.+|||||||..
T Consensus 4 i~I~G~~GSGKSTl 17 (253)
T 2ze6_A 4 HLIYGPTCSGKTDM 17 (253)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCcCHHHH
Confidence 68999999999973
No 326
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=51.61 E-value=8.3 Score=36.56 Aligned_cols=57 Identities=21% Similarity=0.305 Sum_probs=38.9
Q ss_pred CCeEEEEecchhHHHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 007402 283 QKKALIFTNTIDMAFRLKLFLEKF----GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 342 (605)
Q Consensus 283 ~~k~IIFv~s~~~~~~L~~~L~~~----gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~ 342 (605)
..++||.++++..+..+...+..+ ++.+..++++.....+ ......+..+|+|+|..
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~I~v~Tp~ 158 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKK---FGPKSSKKFDILVTTPN 158 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTT---TSTTSCCCCCEEEECHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHH---hhhhhcCCCCEEEECHH
Confidence 347999999999999988888775 6677766654322111 11223466899999964
No 327
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=51.47 E-value=4.8 Score=36.23 Aligned_cols=19 Identities=21% Similarity=0.162 Sum_probs=16.3
Q ss_pred CCCcEEEEcCCCchHHHHH
Q 007402 62 EGKDVVARAKTGSGKTFAY 80 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a~ 80 (605)
.++.+++.+++|||||...
T Consensus 10 ~~~~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLG 28 (180)
T ss_dssp CCCCEEEECSTTSSHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHH
Confidence 5678999999999999843
No 328
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=51.09 E-value=17 Score=39.00 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCchHHHHH
Q 007402 63 GKDVVARAKTGSGKTFAY 80 (605)
Q Consensus 63 gkdvlv~a~TGsGKT~a~ 80 (605)
+.++++.+.||||||.+.
T Consensus 167 ~pHlLIaG~TGSGKSt~L 184 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGV 184 (512)
T ss_dssp SCSEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 468999999999999754
No 329
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=51.01 E-value=6.8 Score=34.97 Aligned_cols=18 Identities=11% Similarity=0.196 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCchHHHHH
Q 007402 63 GKDVVARAKTGSGKTFAY 80 (605)
Q Consensus 63 gkdvlv~a~TGsGKT~a~ 80 (605)
++-+++.|+.|||||.+.
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456899999999999843
No 330
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=50.66 E-value=8 Score=35.66 Aligned_cols=15 Identities=27% Similarity=0.581 Sum_probs=13.4
Q ss_pred CcEEEEcCCCchHHH
Q 007402 64 KDVVARAKTGSGKTF 78 (605)
Q Consensus 64 kdvlv~a~TGsGKT~ 78 (605)
+=+++.||.|+|||.
T Consensus 2 RpIVi~GPSG~GK~T 16 (186)
T 1ex7_A 2 RPIVISGPSGTGKST 16 (186)
T ss_dssp CCEEEECCTTSSHHH
T ss_pred CEEEEECCCCCCHHH
Confidence 458999999999998
No 331
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=50.62 E-value=34 Score=34.41 Aligned_cols=56 Identities=14% Similarity=0.118 Sum_probs=43.4
Q ss_pred CCCeEEEEecchhHHHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 007402 282 VQKKALIFTNTIDMAFRLKLFLEKF----GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 342 (605)
Q Consensus 282 ~~~k~IIFv~s~~~~~~L~~~L~~~----gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~ 342 (605)
...++||.|+++..+..+...+..+ ++.+..++|+.+.......+. ..+|+|+|..
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~ 147 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPG 147 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHH
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHH
Confidence 3568999999999988887777654 688999999988766554433 4689999965
No 332
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=50.43 E-value=6.7 Score=35.93 Aligned_cols=18 Identities=28% Similarity=0.379 Sum_probs=15.7
Q ss_pred CCCcEEEEcCCCchHHHH
Q 007402 62 EGKDVVARAKTGSGKTFA 79 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a 79 (605)
.|.-+++.|++|||||..
T Consensus 5 ~g~~i~l~G~~GsGKSTl 22 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTV 22 (207)
T ss_dssp CCCEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577789999999999974
No 333
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=50.39 E-value=10 Score=35.24 Aligned_cols=40 Identities=15% Similarity=0.250 Sum_probs=24.4
Q ss_pred ceEEEEeCcchhccCC---cH--HHHHHHHhhCCCCceEEEEeee
Q 007402 182 LKILVLDEADLLLSYG---YE--DDLKALSAVIPRGCQCLLMSAT 221 (605)
Q Consensus 182 l~~lViDEad~i~~~g---~~--~~l~~i~~~lp~~~q~il~SAT 221 (605)
-.+|||||||.++... .+ ..+..+...-....++|+++-.
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQG 132 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESC
T ss_pred ceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCC
Confidence 4589999999985432 11 2233333333456788888877
No 334
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=50.03 E-value=14 Score=36.39 Aligned_cols=16 Identities=25% Similarity=0.297 Sum_probs=14.6
Q ss_pred CcEEEEcCCCchHHHH
Q 007402 64 KDVVARAKTGSGKTFA 79 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a 79 (605)
..+++.||+|+|||..
T Consensus 39 ~~vll~G~~GtGKT~l 54 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTL 54 (324)
T ss_dssp CCCEEECCTTCCCHHH
T ss_pred CcEEEECCCCCCHHHH
Confidence 6899999999999974
No 335
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=49.91 E-value=9.7 Score=39.04 Aligned_cols=19 Identities=42% Similarity=0.590 Sum_probs=15.8
Q ss_pred CCCc--EEEEcCCCchHHHHH
Q 007402 62 EGKD--VVARAKTGSGKTFAY 80 (605)
Q Consensus 62 ~gkd--vlv~a~TGsGKT~a~ 80 (605)
.|.+ +++.+.||||||...
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 4776 699999999999754
No 336
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=49.91 E-value=7.5 Score=35.26 Aligned_cols=19 Identities=26% Similarity=0.478 Sum_probs=16.0
Q ss_pred CCCcEEEEcCCCchHHHHH
Q 007402 62 EGKDVVARAKTGSGKTFAY 80 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a~ 80 (605)
.+..+++.+++|||||.+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4567999999999999843
No 337
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=49.72 E-value=13 Score=34.75 Aligned_cols=32 Identities=31% Similarity=0.287 Sum_probs=25.5
Q ss_pred CChHHHHHHHHHHhCCCcEEEEcCCCchHHHH
Q 007402 48 KPTLIQQASIPLILEGKDVVARAKTGSGKTFA 79 (605)
Q Consensus 48 ~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a 79 (605)
.-+.-|..++.-+-.|.-+.+.+|.|||||..
T Consensus 7 pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTL 38 (208)
T 3b85_A 7 PKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYL 38 (208)
T ss_dssp CCSHHHHHHHHHHHHCSEEEEECCTTSSTTHH
T ss_pred cCCHhHHHHHHhccCCCEEEEECCCCCCHHHH
Confidence 33455667777777888899999999999984
No 338
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=49.70 E-value=33 Score=38.35 Aligned_cols=81 Identities=19% Similarity=0.255 Sum_probs=52.8
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHHHHh-------------cC------------CcceEEEEEeCCCCHHHHHHHH---
Q 007402 99 APAALVLVPTRELCQQVYSEVMALIELC-------------KG------------QVQLKVVQLTSSMPASDLRAAL--- 150 (605)
Q Consensus 99 ~~~~LilvPtreLa~Qv~~~~~~l~~~~-------------~~------------~~~i~v~~l~~~~~~~~~~~~l--- 150 (605)
+..+||.|||+.-|..++..+....... .. .....+..++++.+...+....
T Consensus 237 ~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f 316 (720)
T 2zj8_A 237 KKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENF 316 (720)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 4679999999999999998887643210 00 0012377888998877655433
Q ss_pred -cCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCc
Q 007402 151 -AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEA 190 (605)
Q Consensus 151 -~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEa 190 (605)
.+...|||||. .+..| +++..+.+ |||..
T Consensus 317 ~~g~~~vlvaT~-----~l~~G-----vdip~~~~-VI~~~ 346 (720)
T 2zj8_A 317 RKGIIKAVVATP-----TLSAG-----INTPAFRV-IIRDI 346 (720)
T ss_dssp HTTSSCEEEECS-----TTGGG-----CCCCBSEE-EECCS
T ss_pred HCCCCeEEEECc-----Hhhcc-----CCCCceEE-EEcCC
Confidence 36789999993 33333 56666665 55543
No 339
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=49.10 E-value=6.6 Score=38.85 Aligned_cols=16 Identities=25% Similarity=0.306 Sum_probs=13.9
Q ss_pred CcEEEEcCCCchHHHH
Q 007402 64 KDVVARAKTGSGKTFA 79 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a 79 (605)
+.+++.+|+|+|||..
T Consensus 37 ~~lLl~GppGtGKT~l 52 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQ 52 (293)
T ss_dssp SEEEEEECTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4689999999999974
No 340
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=49.05 E-value=50 Score=32.56 Aligned_cols=18 Identities=22% Similarity=0.141 Sum_probs=13.9
Q ss_pred cEEEEcCCCchHHHHHHH
Q 007402 65 DVVARAKTGSGKTFAYLL 82 (605)
Q Consensus 65 dvlv~a~TGsGKT~a~~l 82 (605)
-+++.+++|+|||.....
T Consensus 100 vi~i~G~~G~GKTT~~~~ 117 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGK 117 (297)
T ss_dssp EEEEECSSCSSTTHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467889999999975433
No 341
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=48.88 E-value=9.4 Score=35.53 Aligned_cols=19 Identities=21% Similarity=0.326 Sum_probs=16.4
Q ss_pred hCCCcEEEEcCCCchHHHH
Q 007402 61 LEGKDVVARAKTGSGKTFA 79 (605)
Q Consensus 61 l~gkdvlv~a~TGsGKT~a 79 (605)
..|+-+++.||+|+|||..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp CSCCEEEEECCTTSSHHHH
T ss_pred CCCCEEEEECcCCCCHHHH
Confidence 3678899999999999984
No 342
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=48.62 E-value=50 Score=34.56 Aligned_cols=19 Identities=26% Similarity=0.149 Sum_probs=14.6
Q ss_pred cEEEEcCCCchHHHHHHHH
Q 007402 65 DVVARAKTGSGKTFAYLLP 83 (605)
Q Consensus 65 dvlv~a~TGsGKT~a~~lp 83 (605)
-+++.+++|+|||....-.
T Consensus 102 vI~ivG~~GvGKTT~a~~L 120 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKL 120 (433)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4778899999999865443
No 343
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=48.57 E-value=12 Score=35.15 Aligned_cols=19 Identities=21% Similarity=0.092 Sum_probs=16.0
Q ss_pred hCCCcEEEEcCCCchHHHH
Q 007402 61 LEGKDVVARAKTGSGKTFA 79 (605)
Q Consensus 61 l~gkdvlv~a~TGsGKT~a 79 (605)
-.|+-+.+.+|+|||||..
T Consensus 21 ~~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp -CCCCEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3678899999999999973
No 344
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=48.46 E-value=8.6 Score=35.47 Aligned_cols=20 Identities=20% Similarity=0.190 Sum_probs=16.8
Q ss_pred HhCCCcEEEEcCCCchHHHH
Q 007402 60 ILEGKDVVARAKTGSGKTFA 79 (605)
Q Consensus 60 ~l~gkdvlv~a~TGsGKT~a 79 (605)
+..|+-+++.||+|||||..
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl 28 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTL 28 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHH
T ss_pred cccCCEEEEECCCCCCHHHH
Confidence 34677899999999999974
No 345
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=48.12 E-value=49 Score=37.71 Aligned_cols=56 Identities=18% Similarity=0.102 Sum_probs=42.7
Q ss_pred cCCCeEEEEecchhHHHHHHHHHH----HcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 007402 281 LVQKKALIFTNTIDMAFRLKLFLE----KFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 342 (605)
Q Consensus 281 ~~~~k~IIFv~s~~~~~~L~~~L~----~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~ 342 (605)
+....++|.++|...|.+.+..+. .+|+.+.++.|+++...|.... .++|+|+|+.
T Consensus 113 l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpg 172 (853)
T 2fsf_A 113 LTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNN 172 (853)
T ss_dssp TTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHH
T ss_pred HcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCc
Confidence 345689999999998877766654 4589999999999976554332 3799999963
No 346
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=48.02 E-value=7.7 Score=34.54 Aligned_cols=16 Identities=25% Similarity=0.194 Sum_probs=13.4
Q ss_pred cEEEEcCCCchHHHHH
Q 007402 65 DVVARAKTGSGKTFAY 80 (605)
Q Consensus 65 dvlv~a~TGsGKT~a~ 80 (605)
-+++.|++|||||...
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 3789999999999843
No 347
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=47.96 E-value=23 Score=28.84 Aligned_cols=36 Identities=11% Similarity=0.176 Sum_probs=31.5
Q ss_pred CCeEEEEecchhHHHHHHHHHHHcCCc-EEEEcCCCC
Q 007402 283 QKKALIFTNTIDMAFRLKLFLEKFGIK-SAILNAELP 318 (605)
Q Consensus 283 ~~k~IIFv~s~~~~~~L~~~L~~~gi~-~~~l~~~l~ 318 (605)
..+++|||.+-.++......|...|+. +..|.|++.
T Consensus 52 ~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 52 SRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp TSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred CCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 568999999999999999999999995 888988863
No 348
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=47.89 E-value=8.8 Score=34.04 Aligned_cols=17 Identities=18% Similarity=0.376 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCchHHHH
Q 007402 63 GKDVVARAKTGSGKTFA 79 (605)
Q Consensus 63 gkdvlv~a~TGsGKT~a 79 (605)
+.-+++.++.|||||..
T Consensus 4 ~~~i~l~G~~GsGKSTl 20 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTI 20 (173)
T ss_dssp CCCEEEECCTTSCHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 46789999999999984
No 349
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=47.89 E-value=9 Score=38.64 Aligned_cols=15 Identities=27% Similarity=0.237 Sum_probs=13.3
Q ss_pred cEEEEcCCCchHHHH
Q 007402 65 DVVARAKTGSGKTFA 79 (605)
Q Consensus 65 dvlv~a~TGsGKT~a 79 (605)
-+++.+|||||||..
T Consensus 7 ~i~i~GptGsGKTtl 21 (323)
T 3crm_A 7 AIFLMGPTAAGKTDL 21 (323)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 588999999999973
No 350
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=47.78 E-value=17 Score=36.12 Aligned_cols=26 Identities=31% Similarity=0.506 Sum_probs=18.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhh
Q 007402 63 GKDVVARAKTGSGKTFAYLLPLLHRLFN 90 (605)
Q Consensus 63 gkdvlv~a~TGsGKT~a~~lpil~~ll~ 90 (605)
|.-+.+.+|+|||||.. +-.+..++.
T Consensus 102 g~vi~lvG~nGsGKTTl--l~~Lagll~ 127 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTT--IAKLGRYYQ 127 (304)
T ss_dssp SSEEEEECSTTSSHHHH--HHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHH--HHHHHHHHH
Confidence 45678999999999983 444444554
No 351
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=47.73 E-value=8.1 Score=34.75 Aligned_cols=17 Identities=35% Similarity=0.393 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCchHHHH
Q 007402 63 GKDVVARAKTGSGKTFA 79 (605)
Q Consensus 63 gkdvlv~a~TGsGKT~a 79 (605)
+.-+++.++.|||||..
T Consensus 3 ~~~I~i~G~~GsGKsT~ 19 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTS 19 (192)
T ss_dssp CCEEEEECCTTSCHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 56789999999999984
No 352
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=47.56 E-value=6.9 Score=35.42 Aligned_cols=17 Identities=29% Similarity=0.474 Sum_probs=15.1
Q ss_pred CCCcEEEEcCCCchHHH
Q 007402 62 EGKDVVARAKTGSGKTF 78 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~ 78 (605)
.|.-+++.++.|||||.
T Consensus 8 ~g~~i~l~G~~GsGKST 24 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKST 24 (191)
T ss_dssp TTEEEEEEECTTSCHHH
T ss_pred CCeEEEEECCCCCCHHH
Confidence 56778999999999997
No 353
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=47.27 E-value=11 Score=34.48 Aligned_cols=18 Identities=28% Similarity=0.372 Sum_probs=15.6
Q ss_pred CCCcEEEEcCCCchHHHH
Q 007402 62 EGKDVVARAKTGSGKTFA 79 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a 79 (605)
.|.-+.+.||+|||||..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl 23 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSL 23 (205)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 567788999999999984
No 354
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=47.17 E-value=7.7 Score=41.04 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=15.1
Q ss_pred CcEEEEcCCCchHHHHH
Q 007402 64 KDVVARAKTGSGKTFAY 80 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a~ 80 (605)
+.+|+.+|+|+|||..+
T Consensus 64 ~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALA 80 (456)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcCCHHHHH
Confidence 68999999999999754
No 355
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=46.86 E-value=39 Score=31.95 Aligned_cols=47 Identities=23% Similarity=0.245 Sum_probs=39.8
Q ss_pred CCeEEEEecchhHHHHHHHHHHHcCCc-EEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 007402 283 QKKALIFTNTIDMAFRLKLFLEKFGIK-SAILNAELPQNSRLHILEEFNAGLFDYLIATDD 342 (605)
Q Consensus 283 ~~k~IIFv~s~~~~~~L~~~L~~~gi~-~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~ 342 (605)
.++++|+|++...+..+...+..+++. +..++|+.. ...+|+|+|..
T Consensus 133 ~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~-------------~~~~i~v~T~~ 180 (237)
T 2fz4_A 133 STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK-------------ELKPLTVSTYD 180 (237)
T ss_dssp CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB-------------CCCSEEEEEHH
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC-------------CcCCEEEEeHH
Confidence 679999999999999999888889998 899998764 25689999854
No 356
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=46.51 E-value=11 Score=38.29 Aligned_cols=15 Identities=40% Similarity=0.268 Sum_probs=13.2
Q ss_pred cEEEEcCCCchHHHH
Q 007402 65 DVVARAKTGSGKTFA 79 (605)
Q Consensus 65 dvlv~a~TGsGKT~a 79 (605)
-+++.||||||||..
T Consensus 9 lI~I~GptgSGKTtl 23 (340)
T 3d3q_A 9 LIVIVGPTASGKTEL 23 (340)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred eEEEECCCcCcHHHH
Confidence 478999999999974
No 357
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=46.47 E-value=9.5 Score=39.75 Aligned_cols=14 Identities=36% Similarity=0.508 Sum_probs=12.4
Q ss_pred EEEEcCCCchHHHH
Q 007402 66 VVARAKTGSGKTFA 79 (605)
Q Consensus 66 vlv~a~TGsGKT~a 79 (605)
+++.||||||||..
T Consensus 5 i~i~GptgsGKttl 18 (409)
T 3eph_A 5 IVIAGTTGVGKSQL 18 (409)
T ss_dssp EEEEECSSSSHHHH
T ss_pred EEEECcchhhHHHH
Confidence 68999999999973
No 358
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=46.44 E-value=19 Score=36.75 Aligned_cols=37 Identities=22% Similarity=0.179 Sum_probs=23.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcC
Q 007402 63 GKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVP 107 (605)
Q Consensus 63 gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvP 107 (605)
|.-+++.+++|+|||...+- ++..+... +..++++..
T Consensus 63 G~ii~I~G~pGsGKTtLal~-la~~~~~~-------g~~vlyid~ 99 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQ-VIAAAQRE-------GKTCAFIDA 99 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHH-HHHHHHHT-------TCCEEEEES
T ss_pred CeEEEEECCCCCCHHHHHHH-HHHHHHHC-------CCeEEEEeC
Confidence 46689999999999975544 33333331 345777664
No 359
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=46.33 E-value=19 Score=34.22 Aligned_cols=24 Identities=38% Similarity=0.534 Sum_probs=17.7
Q ss_pred CCC-cEEEEcCCCchHHHHHHHHHH
Q 007402 62 EGK-DVVARAKTGSGKTFAYLLPLL 85 (605)
Q Consensus 62 ~gk-dvlv~a~TGsGKT~a~~lpil 85 (605)
.|+ .+++.++.|+|||.+.+--+.
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~ 28 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAH 28 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHH
Confidence 344 589999999999987544333
No 360
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=46.28 E-value=8.6 Score=33.90 Aligned_cols=16 Identities=6% Similarity=-0.110 Sum_probs=13.5
Q ss_pred cEEEEcCCCchHHHHH
Q 007402 65 DVVARAKTGSGKTFAY 80 (605)
Q Consensus 65 dvlv~a~TGsGKT~a~ 80 (605)
-+++.|+.|||||...
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999843
No 361
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=46.22 E-value=77 Score=38.25 Aligned_cols=40 Identities=25% Similarity=0.274 Sum_probs=27.0
Q ss_pred cCCCceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEE
Q 007402 178 FSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLL 217 (605)
Q Consensus 178 ~l~~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il 217 (605)
.+++-+++|+||+=--++..-+..+...+..+.+++-+|+
T Consensus 569 l~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~ii 608 (1321)
T 4f4c_A 569 LVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTII 608 (1321)
T ss_dssp HTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEE
T ss_pred HccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 3456679999999888877667777766665544443333
No 362
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=46.15 E-value=28 Score=36.14 Aligned_cols=24 Identities=17% Similarity=0.389 Sum_probs=18.7
Q ss_pred cCcccCCCCHHHHHHHHHCCCCCC
Q 007402 26 KSFEELGLDLRLVHALNKKGIQKP 49 (605)
Q Consensus 26 ~~f~~~~L~~~l~~al~~~g~~~p 49 (605)
..+...|+++..++.|.+.||.+-
T Consensus 84 ~~l~~~gi~~~~~~~L~~ag~~tv 107 (400)
T 3lda_A 84 EKLQVNGITMADVKKLRESGLHTA 107 (400)
T ss_dssp GGGCCTTCCHHHHHHHHHTTCCBH
T ss_pred HHHHhCCCCHHHHHHHHHcCCCcH
Confidence 345566799999999999998664
No 363
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=46.11 E-value=17 Score=30.67 Aligned_cols=36 Identities=19% Similarity=0.134 Sum_probs=31.1
Q ss_pred CCeEEEEecchhH--HHHHHHHHHHcCCcEEEEcCCCC
Q 007402 283 QKKALIFTNTIDM--AFRLKLFLEKFGIKSAILNAELP 318 (605)
Q Consensus 283 ~~k~IIFv~s~~~--~~~L~~~L~~~gi~~~~l~~~l~ 318 (605)
..+++|+|.+-.+ +......|...|+.+..|.|++.
T Consensus 71 ~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 71 AKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp TSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred CCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 5689999999877 88999999999999888988863
No 364
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=45.28 E-value=28 Score=40.44 Aligned_cols=56 Identities=13% Similarity=0.125 Sum_probs=39.4
Q ss_pred CCeEEEEecchhHHHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 007402 283 QKKALIFTNTIDMAFRLKLFLEKF----GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 342 (605)
Q Consensus 283 ~~k~IIFv~s~~~~~~L~~~L~~~----gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~ 342 (605)
.+++||.|+++..+......+..+ ++.+..++|+.+...+...+. +..+|+|+|..
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~----~~~~IvI~Tp~ 355 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQ 355 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHH----HHCSEEEECHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhc----cCCCEEEecHH
Confidence 568999999999888877777665 899999999987655422221 23789999965
No 365
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=45.26 E-value=35 Score=38.05 Aligned_cols=79 Identities=19% Similarity=0.203 Sum_probs=51.7
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHHHHhcC----------------------CcceEEEEEeCCCCHHHHHHHH----cC
Q 007402 99 APAALVLVPTRELCQQVYSEVMALIELCKG----------------------QVQLKVVQLTSSMPASDLRAAL----AG 152 (605)
Q Consensus 99 ~~~~LilvPtreLa~Qv~~~~~~l~~~~~~----------------------~~~i~v~~l~~~~~~~~~~~~l----~~ 152 (605)
+..+||.||++.-+..++..+......+-. .....+..++|+.+...+.... .+
T Consensus 242 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g 321 (702)
T 2p6r_A 242 NGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRG 321 (702)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTT
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCC
Confidence 456999999999999999888765321000 0012356688998887655443 36
Q ss_pred CCcEEEECCchHHHHHhcCCCCCcccCCCceEEEE
Q 007402 153 PPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVL 187 (605)
Q Consensus 153 ~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lVi 187 (605)
...|||||. .+..| +++..+.+||-
T Consensus 322 ~~~vlvaT~-----~l~~G-----idip~~~~VI~ 346 (702)
T 2p6r_A 322 NIKVVVATP-----TLAAG-----VNLPARRVIVR 346 (702)
T ss_dssp SCCEEEECS-----TTTSS-----SCCCBSEEEEC
T ss_pred CCeEEEECc-----HHhcc-----CCCCceEEEEc
Confidence 789999993 33333 66777766443
No 366
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=45.20 E-value=21 Score=37.66 Aligned_cols=37 Identities=16% Similarity=0.067 Sum_probs=24.3
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcC
Q 007402 63 GKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVP 107 (605)
Q Consensus 63 gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvP 107 (605)
|.=+++.|++|+|||.. ++-++..+... +..++++.-
T Consensus 197 G~liiIaG~pG~GKTtl-al~ia~~~a~~-------g~~vl~fSl 233 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAF-ALKQAKNMSDN-------DDVVNLHSL 233 (444)
T ss_dssp SCEEEEEECSSSSHHHH-HHHHHHHHHHT-------TCEEEEECS
T ss_pred CcEEEEEeCCCCChHHH-HHHHHHHHHHc-------CCEEEEEEC
Confidence 35589999999999964 44444444431 445777753
No 367
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=45.19 E-value=9 Score=42.14 Aligned_cols=14 Identities=14% Similarity=0.332 Sum_probs=13.5
Q ss_pred cEEEEcCCCchHHH
Q 007402 65 DVVARAKTGSGKTF 78 (605)
Q Consensus 65 dvlv~a~TGsGKT~ 78 (605)
++|+.||+|+|||.
T Consensus 329 ~vLL~GppGtGKT~ 342 (595)
T 3f9v_A 329 HILIIGDPGTAKSQ 342 (595)
T ss_dssp CEEEEESSCCTHHH
T ss_pred ceEEECCCchHHHH
Confidence 89999999999997
No 368
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=44.98 E-value=14 Score=30.28 Aligned_cols=35 Identities=14% Similarity=0.130 Sum_probs=31.0
Q ss_pred CCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCC
Q 007402 283 QKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAEL 317 (605)
Q Consensus 283 ~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l 317 (605)
..+++++|.+-.++...+.+|.+.|+....|.|++
T Consensus 56 ~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 56 NEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 56899999999999999999999999988888775
No 369
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=44.83 E-value=20 Score=36.39 Aligned_cols=44 Identities=20% Similarity=0.166 Sum_probs=26.9
Q ss_pred HHHHHhC------CCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcC
Q 007402 56 SIPLILE------GKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVP 107 (605)
Q Consensus 56 aIp~~l~------gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvP 107 (605)
.+..++. |.-+++.+++|+|||...+. ++..+... +..++++.-
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~-la~~~~~~-------g~~vlyi~~ 97 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVALH-AVANAQAA-------GGIAAFIDA 97 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHH-HHHHHHHT-------TCCEEEEES
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHH-HHHHHHhC-------CCeEEEEEC
Confidence 3455555 35689999999999975443 33333321 344666653
No 370
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=44.60 E-value=66 Score=36.65 Aligned_cols=55 Identities=16% Similarity=0.144 Sum_probs=42.9
Q ss_pred cCCCeEEEEecchhHHHHHHHHHHH----cCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcC
Q 007402 281 LVQKKALIFTNTIDMAFRLKLFLEK----FGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 341 (605)
Q Consensus 281 ~~~~k~IIFv~s~~~~~~L~~~L~~----~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd 341 (605)
+.+..++|.++|..-|.+.+..+.. +|+.+.++.|+++...|.... ..+|+++|+
T Consensus 122 L~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTp 180 (844)
T 1tf5_A 122 LTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTN 180 (844)
T ss_dssp TTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEH
T ss_pred HcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECc
Confidence 3355799999999998887766654 589999999999987665432 268999996
No 371
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=44.60 E-value=13 Score=34.55 Aligned_cols=15 Identities=33% Similarity=0.534 Sum_probs=13.2
Q ss_pred EEEEcCCCchHHHHH
Q 007402 66 VVARAKTGSGKTFAY 80 (605)
Q Consensus 66 vlv~a~TGsGKT~a~ 80 (605)
.++.|+.|||||...
T Consensus 8 ~l~tG~pGsGKT~~a 22 (199)
T 2r2a_A 8 CLITGTPGSGKTLKM 22 (199)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEEeCCCCCHHHHH
Confidence 689999999999854
No 372
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=44.43 E-value=10 Score=34.86 Aligned_cols=18 Identities=39% Similarity=0.466 Sum_probs=15.7
Q ss_pred CCCcEEEEcCCCchHHHH
Q 007402 62 EGKDVVARAKTGSGKTFA 79 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a 79 (605)
.|.-+++.++.|||||..
T Consensus 28 ~g~~i~l~G~~GsGKSTl 45 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTI 45 (200)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 467899999999999984
No 373
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=44.13 E-value=21 Score=31.11 Aligned_cols=36 Identities=6% Similarity=0.064 Sum_probs=31.4
Q ss_pred CCeEEEEecchhHHHHHHHHHHHcCC-cEEEEcCCCC
Q 007402 283 QKKALIFTNTIDMAFRLKLFLEKFGI-KSAILNAELP 318 (605)
Q Consensus 283 ~~k~IIFv~s~~~~~~L~~~L~~~gi-~~~~l~~~l~ 318 (605)
..++||||.+-.++...+..|...|+ ++..|.|++.
T Consensus 80 ~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 80 ERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp -CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 56899999998889999999999999 5899999884
No 374
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=44.11 E-value=14 Score=32.37 Aligned_cols=23 Identities=22% Similarity=0.144 Sum_probs=16.4
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHh
Q 007402 65 DVVARAKTGSGKTFAYLLPLLHRLF 89 (605)
Q Consensus 65 dvlv~a~TGsGKT~a~~lpil~~ll 89 (605)
-.++.+|+|||||.. +-++..++
T Consensus 25 ~~~I~G~NGsGKSti--l~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL--LDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHH
T ss_pred eEEEECCCCCCHHHH--HHHHHHHH
Confidence 368999999999984 44444444
No 375
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=44.05 E-value=14 Score=43.07 Aligned_cols=88 Identities=10% Similarity=0.071 Sum_probs=59.6
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHH---c-CC--CcEEEECCchHHHHHhcCC
Q 007402 99 APAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL---A-GP--PDIVIATPGCMPKCLSTGV 172 (605)
Q Consensus 99 ~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l---~-~~--~dIvV~TP~~l~~~l~~~~ 172 (605)
+.++||+|+++.-+..+.+.+.... ++++..++|+++.......+ . +. ++|+|+|. .+..|
T Consensus 503 ~~k~iVF~~~~~~~~~l~~~L~~~~-------g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~-----v~~~G- 569 (968)
T 3dmq_A 503 SQKVLVICAKAATALQLEQVLRERE-------GIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSE-----IGSEG- 569 (968)
T ss_dssp SSCCCEECSSTHHHHHHHHHHHTTT-------CCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSC-----CTTCS-
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHHc-------CCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecc-----hhhcC-
Confidence 5679999999998888777766321 67899999998764433322 2 33 89999992 23333
Q ss_pred CCCcccCCCceEEEEeCcchhccCCcHHHHHHHHh
Q 007402 173 LQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207 (605)
Q Consensus 173 ~~~~~~l~~l~~lViDEad~i~~~g~~~~l~~i~~ 207 (605)
+++..+.+||+-+.+ ++....++.+-+
T Consensus 570 ----lDl~~~~~VI~~d~p----~~~~~~~Q~~GR 596 (968)
T 3dmq_A 570 ----RNFQFASHMVMFDLP----FNPDLLEQRIGR 596 (968)
T ss_dssp ----SCCTTCCEEECSSCC----SSHHHHHHHHHT
T ss_pred ----CCcccCcEEEEecCC----CCHHHHHHHhhc
Confidence 777888888876664 444444555444
No 376
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=43.87 E-value=13 Score=33.22 Aligned_cols=23 Identities=17% Similarity=0.072 Sum_probs=16.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHh
Q 007402 65 DVVARAKTGSGKTFAYLLPLLHRLF 89 (605)
Q Consensus 65 dvlv~a~TGsGKT~a~~lpil~~ll 89 (605)
-.++.+++|||||.. +-++..++
T Consensus 28 ~~~i~G~NGsGKStl--l~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNI--GDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHH--HHHHHHHT
T ss_pred cEEEECCCCCCHHHH--HHHHHHHH
Confidence 468999999999983 44444444
No 377
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=43.40 E-value=9.1 Score=34.12 Aligned_cols=19 Identities=26% Similarity=0.239 Sum_probs=15.5
Q ss_pred CCCcEEEEcCCCchHHHHH
Q 007402 62 EGKDVVARAKTGSGKTFAY 80 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a~ 80 (605)
.|.-+++.++.|||||...
T Consensus 7 ~g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp TSEEEEEECSTTSCHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3566899999999999843
No 378
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=43.24 E-value=28 Score=28.28 Aligned_cols=37 Identities=5% Similarity=0.080 Sum_probs=31.9
Q ss_pred CCCeEEEEecchhHHHHHHHHHHHcCCc-EEEEcCCCC
Q 007402 282 VQKKALIFTNTIDMAFRLKLFLEKFGIK-SAILNAELP 318 (605)
Q Consensus 282 ~~~k~IIFv~s~~~~~~L~~~L~~~gi~-~~~l~~~l~ 318 (605)
...+++|+|.+-.++......|...|+. +..|.|++.
T Consensus 57 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 57 FDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 3568999999988999999999999995 888998864
No 379
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=43.22 E-value=24 Score=45.70 Aligned_cols=49 Identities=16% Similarity=0.175 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHCCCCCChHHH-HHHHH---HHhCCCcEEEEcCCCchHHHHHHH
Q 007402 33 LDLRLVHALNKKGIQKPTLIQ-QASIP---LILEGKDVVARAKTGSGKTFAYLL 82 (605)
Q Consensus 33 L~~~l~~al~~~g~~~pt~iQ-~~aIp---~~l~gkdvlv~a~TGsGKT~a~~l 82 (605)
+...+.+++.+.|+. |++.+ .+++. .+...+.+++.||||||||.++-+
T Consensus 890 l~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 890 IVQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp HHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHH
Confidence 445567778888885 66655 44443 334457899999999999997643
No 380
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=42.96 E-value=22 Score=37.96 Aligned_cols=50 Identities=6% Similarity=0.011 Sum_probs=28.1
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHH
Q 007402 62 EGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEV 119 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~ 119 (605)
.|.=+++.|++|+|||... +-++..+... .+..++++.- .+-..|+...+
T Consensus 241 ~G~l~li~G~pG~GKT~la-l~~a~~~a~~------~g~~vl~~s~-E~s~~~l~~r~ 290 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFV-RQQALQWGTA------MGKKVGLAML-EESVEETAEDL 290 (503)
T ss_dssp TTCEEEEEESSCHHHHHHH-HHHHHHHTTT------SCCCEEEEES-SSCHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHH-HHHHHHHHHh------cCCcEEEEec-cCCHHHHHHHH
Confidence 3456899999999999643 4444433321 1345777653 22233444443
No 381
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=42.79 E-value=15 Score=33.26 Aligned_cols=16 Identities=25% Similarity=0.520 Sum_probs=13.5
Q ss_pred CcEEEEcCCCchHHHH
Q 007402 64 KDVVARAKTGSGKTFA 79 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a 79 (605)
+-+.+.+|+|||||..
T Consensus 2 ~ii~l~GpsGaGKsTl 17 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEESSSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4578999999999983
No 382
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=42.77 E-value=23 Score=36.32 Aligned_cols=44 Identities=18% Similarity=0.197 Sum_probs=27.8
Q ss_pred HHHHHhC------CCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcC
Q 007402 56 SIPLILE------GKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVP 107 (605)
Q Consensus 56 aIp~~l~------gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvP 107 (605)
.+..++. |.-+++.+++|+|||.. ++.++..+... +..++++..
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKTtl-al~la~~~~~~-------g~~vlyi~~ 110 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKTTL-ALAIVAQAQKA-------GGTCAFIDA 110 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHH-HHHHHHHHHHT-------TCCEEEEES
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChHHH-HHHHHHHHHHC-------CCeEEEEEC
Confidence 4555565 35688999999999964 44444444431 334666654
No 383
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=42.67 E-value=5.6 Score=38.41 Aligned_cols=17 Identities=35% Similarity=0.477 Sum_probs=14.7
Q ss_pred CcEEEEcCCCchHHHHH
Q 007402 64 KDVVARAKTGSGKTFAY 80 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a~ 80 (605)
+.+++.||+|+|||...
T Consensus 45 ~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp SCCCCBCSSCSSHHHHH
T ss_pred ceEEEECCCCCcHHHHH
Confidence 56999999999999743
No 384
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=42.65 E-value=24 Score=34.85 Aligned_cols=20 Identities=35% Similarity=0.353 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 007402 63 GKDVVARAKTGSGKTFAYLL 82 (605)
Q Consensus 63 gkdvlv~a~TGsGKT~a~~l 82 (605)
|+-+++.+++|+|||.....
T Consensus 105 g~vi~lvG~~GsGKTTl~~~ 124 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAK 124 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45688999999999985443
No 385
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=42.65 E-value=15 Score=33.82 Aligned_cols=21 Identities=24% Similarity=0.251 Sum_probs=16.1
Q ss_pred HHhCCCcEEEEcCCCchHHHH
Q 007402 59 LILEGKDVVARAKTGSGKTFA 79 (605)
Q Consensus 59 ~~l~gkdvlv~a~TGsGKT~a 79 (605)
.+-.|+-+.+.+|+|||||..
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTL 36 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTV 36 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHH
Confidence 455788889999999999983
No 386
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=42.62 E-value=16 Score=35.27 Aligned_cols=22 Identities=32% Similarity=0.342 Sum_probs=18.2
Q ss_pred HHhCCCcEEEEcCCCchHHHHH
Q 007402 59 LILEGKDVVARAKTGSGKTFAY 80 (605)
Q Consensus 59 ~~l~gkdvlv~a~TGsGKT~a~ 80 (605)
..+.|+.+++.++.|||||...
T Consensus 44 ~~l~g~~i~l~G~~GsGKSTl~ 65 (250)
T 3nwj_A 44 PYLNGRSMYLVGMMGSGKTTVG 65 (250)
T ss_dssp HHHTTCCEEEECSTTSCHHHHH
T ss_pred hhcCCCEEEEECCCCCCHHHHH
Confidence 3345899999999999999853
No 387
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=42.61 E-value=15 Score=34.04 Aligned_cols=30 Identities=17% Similarity=0.068 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHhCCCcEEEEcCCCchHHHHH
Q 007402 50 TLIQQASIPLILEGKDVVARAKTGSGKTFAY 80 (605)
Q Consensus 50 t~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a~ 80 (605)
++.+... +.+-.|.-+++.++.|||||...
T Consensus 13 ~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 13 TRSERTE-LRNQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp CHHHHHH-HHTSSCEEEEEECSTTSSHHHHH
T ss_pred CHHHhhc-ccCCCCCEEEEECCCCCCHHHHH
Confidence 4555555 33456778899999999999743
No 388
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=42.37 E-value=9.6 Score=34.14 Aligned_cols=19 Identities=37% Similarity=0.247 Sum_probs=15.5
Q ss_pred CCCcEEEEcCCCchHHHHH
Q 007402 62 EGKDVVARAKTGSGKTFAY 80 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a~ 80 (605)
.|.-+.+.+|.|||||..+
T Consensus 8 ~gei~~l~G~nGsGKSTl~ 26 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFA 26 (171)
T ss_dssp SSEEEEEECCTTSCHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4566889999999999844
No 389
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=42.31 E-value=29 Score=37.82 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=18.7
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhh
Q 007402 64 KDVVARAKTGSGKTFAYLLPLLHRLFN 90 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a~~lpil~~ll~ 90 (605)
-+++|.+.||||||.+.- .++..++.
T Consensus 215 pHlLIaG~TGSGKS~~L~-tlI~sLl~ 240 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVN-AMLLSILF 240 (574)
T ss_dssp CCEEEECCTTSSHHHHHH-HHHHHHHT
T ss_pred CeeEEECCCCCCHHHHHH-HHHHHHHH
Confidence 579999999999997544 34444443
No 390
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=42.17 E-value=18 Score=31.00 Aligned_cols=36 Identities=14% Similarity=0.092 Sum_probs=31.9
Q ss_pred CCeEEEEecchhHHHHHHHHHHHcCCc-EEEEcCCCC
Q 007402 283 QKKALIFTNTIDMAFRLKLFLEKFGIK-SAILNAELP 318 (605)
Q Consensus 283 ~~k~IIFv~s~~~~~~L~~~L~~~gi~-~~~l~~~l~ 318 (605)
..+++|||.+-.++......|...|+. +..|.|++.
T Consensus 86 ~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 122 (139)
T 2hhg_A 86 DKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFG 122 (139)
T ss_dssp SSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHH
T ss_pred CCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHH
Confidence 568999999999999999999999995 999999863
No 391
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=42.12 E-value=4 Score=43.91 Aligned_cols=71 Identities=11% Similarity=0.253 Sum_probs=44.3
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHH----HHHHHcCCCcEEEECCchHHHHHhcCCCC
Q 007402 99 APAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASD----LRAALAGPPDIVIATPGCMPKCLSTGVLQ 174 (605)
Q Consensus 99 ~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~----~~~~l~~~~dIvV~TP~~l~~~l~~~~~~ 174 (605)
+.++||.|+++.-|..++..+... ++.+..++|+.+... ......+..+|+|+|. .+..|
T Consensus 357 ~~~~LVF~~s~~~a~~l~~~L~~~--------~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~-----~l~~G--- 420 (508)
T 3fho_A 357 IGQSIIFCKKKDTAEEIARRMTAD--------GHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTN-----VIARG--- 420 (508)
T ss_dssp CCCEEEBCSSTTTTTHHHHHHTTT--------TCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-------------
T ss_pred CCcEEEEECCHHHHHHHHHHHHhC--------CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCC-----hhhcC---
Confidence 457999999999988888776542 566777777765432 2333456789999993 44445
Q ss_pred CcccCCCceEEEE
Q 007402 175 SKSFSDSLKILVL 187 (605)
Q Consensus 175 ~~~~l~~l~~lVi 187 (605)
+++.++++||.
T Consensus 421 --iDip~v~~VI~ 431 (508)
T 3fho_A 421 --IDVSQVNLVVN 431 (508)
T ss_dssp --CCCTTCCEEEC
T ss_pred --CCccCCCEEEE
Confidence 67777888874
No 392
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=41.80 E-value=8.4 Score=34.63 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=15.6
Q ss_pred CCCcEEEEcCCCchHHHHH
Q 007402 62 EGKDVVARAKTGSGKTFAY 80 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a~ 80 (605)
.|.-+++.++.|||||...
T Consensus 3 ~g~~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQA 21 (186)
T ss_dssp CEEEEEEECCTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3556899999999999843
No 393
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=41.50 E-value=36 Score=35.62 Aligned_cols=47 Identities=23% Similarity=0.263 Sum_probs=39.7
Q ss_pred CCeEEEEecchhHHHHHHHHHHHcCCc-EEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 007402 283 QKKALIFTNTIDMAFRLKLFLEKFGIK-SAILNAELPQNSRLHILEEFNAGLFDYLIATDD 342 (605)
Q Consensus 283 ~~k~IIFv~s~~~~~~L~~~L~~~gi~-~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~ 342 (605)
..++||.|+++..+......|..+++. +.+++|+... ..+|+|+|..
T Consensus 133 ~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~-------------~~~Ivv~T~~ 180 (472)
T 2fwr_A 133 STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-------------LKPLTVSTYD 180 (472)
T ss_dssp CSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBC-------------CCSEEEEEHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcCC-------------cCCEEEEEcH
Confidence 679999999999999999999889999 9999998753 3567777753
No 394
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=41.43 E-value=18 Score=31.56 Aligned_cols=36 Identities=11% Similarity=0.116 Sum_probs=31.4
Q ss_pred CCeEEEEecch--hHHHHHHHHHHHcCCcEEEEcCCCC
Q 007402 283 QKKALIFTNTI--DMAFRLKLFLEKFGIKSAILNAELP 318 (605)
Q Consensus 283 ~~k~IIFv~s~--~~~~~L~~~L~~~gi~~~~l~~~l~ 318 (605)
..++||||.+- .++......|...|+++..|.|++.
T Consensus 72 ~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 72 EKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp TSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHH
T ss_pred CCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHH
Confidence 45789999987 6899999999999999999999864
No 395
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=41.30 E-value=1.3e+02 Score=34.13 Aligned_cols=107 Identities=17% Similarity=0.220 Sum_probs=68.9
Q ss_pred CchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHHc-
Q 007402 73 GSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAALA- 151 (605)
Q Consensus 73 GsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l~- 151 (605)
.|||..+ +.-++..+.. .+.++||.+.....+..+...+... ++.+..+.|+++...+...+.
T Consensus 554 ~s~K~~~-L~~lL~~~~~-------~g~kvLIFsq~~~~ld~L~~~L~~~--------g~~~~~i~G~~~~~eR~~~i~~ 617 (800)
T 3mwy_W 554 SSGKMVL-LDQLLTRLKK-------DGHRVLIFSQMVRMLDILGDYLSIK--------GINFQRLDGTVPSAQRRISIDH 617 (800)
T ss_dssp TCHHHHH-HHHHHHHHTT-------TTCCEEEEESCHHHHHHHHHHHHHH--------TCCCEEESTTSCHHHHHHHHHT
T ss_pred cChHHHH-HHHHHHHHhh-------CCCeEEEEechHHHHHHHHHHHHhC--------CCCEEEEeCCCCHHHHHHHHHH
Confidence 4788653 4445554432 3668999999988877777666543 678889999998877666554
Q ss_pred --C-CC---cEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCcHHHHHHHHhhC
Q 007402 152 --G-PP---DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVI 209 (605)
Q Consensus 152 --~-~~---dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~~~l~~i~~~l 209 (605)
. .. -++++| .....| +.+...++||+=+. .|....+++.+-+..
T Consensus 618 F~~~~~~~~v~LlSt-----~agg~G-----lNL~~a~~VI~~D~----~wnp~~~~Qa~gR~~ 667 (800)
T 3mwy_W 618 FNSPDSNDFVFLLST-----RAGGLG-----INLMTADTVVIFDS----DWNPQADLQAMARAH 667 (800)
T ss_dssp TSSTTCSCCCEEEEH-----HHHTTT-----CCCTTCCEEEESSC----CSCSHHHHHHHTTTS
T ss_pred hhCCCCCceEEEEec-----ccccCC-----CCccccceEEEecC----CCChhhHHHHHHHHH
Confidence 1 22 266666 455555 66777777776433 355566666665543
No 396
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=40.91 E-value=15 Score=33.77 Aligned_cols=20 Identities=30% Similarity=0.127 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 007402 63 GKDVVARAKTGSGKTFAYLL 82 (605)
Q Consensus 63 gkdvlv~a~TGsGKT~a~~l 82 (605)
|.-+++.+++|+|||.....
T Consensus 20 G~~~~i~G~~GsGKTtl~~~ 39 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQ 39 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 46689999999999975433
No 397
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=40.64 E-value=23 Score=32.67 Aligned_cols=19 Identities=26% Similarity=0.078 Sum_probs=15.4
Q ss_pred CCCcEEEEcCCCchHHHHH
Q 007402 62 EGKDVVARAKTGSGKTFAY 80 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a~ 80 (605)
.|.-+.+.+|+|||||...
T Consensus 24 ~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp SSEEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3566889999999999743
No 398
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=40.61 E-value=17 Score=36.30 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=19.2
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHHh
Q 007402 62 EGKDVVARAKTGSGKTFAYLLPLLHRLF 89 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a~~lpil~~ll 89 (605)
.|+-+.+.+|+|||||. ++-++..++
T Consensus 125 ~Ge~vaIvGpsGsGKST--Ll~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSM--LCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHH--HHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHH--HHHHHhhhc
Confidence 56778899999999997 344444444
No 399
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=40.61 E-value=13 Score=34.41 Aligned_cols=17 Identities=29% Similarity=0.313 Sum_probs=14.3
Q ss_pred CCCcEEEEcCCCchHHH
Q 007402 62 EGKDVVARAKTGSGKTF 78 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~ 78 (605)
.|.-+.+.+|+|||||.
T Consensus 21 ~g~~v~I~G~sGsGKST 37 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKST 37 (208)
T ss_dssp SCEEEEEECCTTSCTHH
T ss_pred CCeEEEEECCCCCCHHH
Confidence 35567899999999997
No 400
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=40.55 E-value=28 Score=33.98 Aligned_cols=19 Identities=21% Similarity=0.372 Sum_probs=15.9
Q ss_pred CCCcEEEEcCCCchHHHHH
Q 007402 62 EGKDVVARAKTGSGKTFAY 80 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a~ 80 (605)
.|.-+++.|++|+|||...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~ 52 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFV 52 (296)
T ss_dssp TTCEEEEEESTTSSHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHH
Confidence 4677889999999999744
No 401
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=40.39 E-value=31 Score=33.62 Aligned_cols=42 Identities=14% Similarity=0.204 Sum_probs=27.4
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHH
Q 007402 25 EKSFEELGLDLRLVHALNKKGIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFA 79 (605)
Q Consensus 25 ~~~f~~~~L~~~l~~al~~~g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a 79 (605)
..+|+++--.+.+++.|...= .. -....+++.||+|+|||..
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l-~~------------~~~~~~ll~G~~G~GKt~l 54 (319)
T 2chq_A 13 PRTLDEVVGQDEVIQRLKGYV-ER------------KNIPHLLFSGPPGTGKTAT 54 (319)
T ss_dssp CSSGGGSCSCHHHHHHHHTTT-TT------------TCCCCEEEESSSSSSHHHH
T ss_pred CCCHHHHhCCHHHHHHHHHHH-hC------------CCCCeEEEECcCCcCHHHH
Confidence 356777766667777666531 11 0112599999999999974
No 402
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=40.31 E-value=19 Score=35.85 Aligned_cols=26 Identities=23% Similarity=0.248 Sum_probs=17.8
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhh
Q 007402 63 GKDVVARAKTGSGKTFAYLLPLLHRLFN 90 (605)
Q Consensus 63 gkdvlv~a~TGsGKT~a~~lpil~~ll~ 90 (605)
|.-+.+.+|+|+|||.. +-.+..++.
T Consensus 100 g~vi~lvG~nGsGKTTl--l~~Lag~l~ 125 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTS--LGKLAHRLK 125 (302)
T ss_dssp CEEEEEECCTTSCHHHH--HHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHH--HHHHHHHHH
Confidence 34577999999999984 334444443
No 403
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=40.17 E-value=22 Score=30.06 Aligned_cols=36 Identities=6% Similarity=-0.020 Sum_probs=31.7
Q ss_pred CCeEEEEecchhHHHHHHHHHHHcCCc-EEEEcCCCC
Q 007402 283 QKKALIFTNTIDMAFRLKLFLEKFGIK-SAILNAELP 318 (605)
Q Consensus 283 ~~k~IIFv~s~~~~~~L~~~L~~~gi~-~~~l~~~l~ 318 (605)
..++||||.+-.++......|.+.|+. +..|.|++.
T Consensus 82 ~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 82 SDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp TSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 568999999989999999999999985 888999874
No 404
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=40.09 E-value=6.1 Score=47.90 Aligned_cols=40 Identities=28% Similarity=0.353 Sum_probs=27.9
Q ss_pred CCCceEEEEeCcchhccCCcHHHHHHHHhhCCCCceEEEE
Q 007402 179 SDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLM 218 (605)
Q Consensus 179 l~~l~~lViDEad~i~~~g~~~~l~~i~~~lp~~~q~il~ 218 (605)
+.+-++||+|||=--++..-+..++..+..+.+++-+|..
T Consensus 1233 lr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~I 1272 (1321)
T 4f4c_A 1233 VRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVI 1272 (1321)
T ss_dssp HSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEE
T ss_pred HhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 3455789999998777776677777777766655544443
No 405
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=40.07 E-value=75 Score=30.25 Aligned_cols=56 Identities=14% Similarity=0.237 Sum_probs=42.5
Q ss_pred CCeEEEEecchhHHHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 007402 283 QKKALIFTNTIDMAFRLKLFLEKF----GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 342 (605)
Q Consensus 283 ~~k~IIFv~s~~~~~~L~~~L~~~----gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~ 342 (605)
..++||.++++..+......++.+ ++.+..+.|+....... ..+..| .+|+|+|..
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~-~~Iiv~Tp~ 185 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEA---QKLGNG-INIIVATPG 185 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHH---HHHHHC-CSEEEECHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHH---HHhcCC-CCEEEEcHH
Confidence 567999999999998888877764 56788888888765443 334445 899999964
No 406
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=39.77 E-value=4.3 Score=46.28 Aligned_cols=53 Identities=19% Similarity=0.296 Sum_probs=34.2
Q ss_pred cccCcccCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHH
Q 007402 24 EEKSFEELGLDLRLVHALNKK---GIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFA 79 (605)
Q Consensus 24 ~~~~f~~~~L~~~l~~al~~~---g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a 79 (605)
+..+|++.+.-..+.+.|.+. -+..|..++.--+ -..+.+|+.+|+|+|||+.
T Consensus 472 p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~---~~~~gvLl~GPPGtGKT~l 527 (806)
T 3cf2_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGM---TPSKGVLFYGPPGCGKTLL 527 (806)
T ss_dssp CCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCC---CCCSCCEEESSTTSSHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCC---CCCceEEEecCCCCCchHH
Confidence 457899998878888887764 2233332211100 1126799999999999973
No 407
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=39.68 E-value=67 Score=24.54 Aligned_cols=35 Identities=14% Similarity=0.138 Sum_probs=28.9
Q ss_pred CCeEEEEecchhHHHHHHHHHHHcCCc-EEEEcCCCC
Q 007402 283 QKKALIFTNTIDMAFRLKLFLEKFGIK-SAILNAELP 318 (605)
Q Consensus 283 ~~k~IIFv~s~~~~~~L~~~L~~~gi~-~~~l~~~l~ 318 (605)
..+++++|.+-.++...+..|.+.|+. +..+ |++.
T Consensus 41 ~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 41 NDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp TSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred CCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 568999999989999999999999985 5566 6653
No 408
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=39.59 E-value=12 Score=34.22 Aligned_cols=17 Identities=29% Similarity=0.354 Sum_probs=14.6
Q ss_pred CcEEEEcCCCchHHHHH
Q 007402 64 KDVVARAKTGSGKTFAY 80 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a~ 80 (605)
.-+++.|+.|||||...
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46999999999999843
No 409
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=39.58 E-value=19 Score=31.03 Aligned_cols=36 Identities=17% Similarity=0.185 Sum_probs=31.9
Q ss_pred CCeEEEEecchhHHHHHHHHHHHcCC-cEEEEcCCCC
Q 007402 283 QKKALIFTNTIDMAFRLKLFLEKFGI-KSAILNAELP 318 (605)
Q Consensus 283 ~~k~IIFv~s~~~~~~L~~~L~~~gi-~~~~l~~~l~ 318 (605)
..+++|||.+-.++......|...|+ ++..|.|++.
T Consensus 82 ~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 118 (137)
T 1qxn_A 82 EKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMD 118 (137)
T ss_dssp TSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHH
T ss_pred CCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHH
Confidence 56899999999999999999999999 5889999973
No 410
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=39.54 E-value=19 Score=35.91 Aligned_cols=13 Identities=31% Similarity=0.363 Sum_probs=12.1
Q ss_pred EEEEcCCCchHHH
Q 007402 66 VVARAKTGSGKTF 78 (605)
Q Consensus 66 vlv~a~TGsGKT~ 78 (605)
+++.++.|||||.
T Consensus 7 ~~i~G~~GaGKTT 19 (318)
T 1nij_A 7 TLLTGFLGAGKTT 19 (318)
T ss_dssp EEEEESSSSSCHH
T ss_pred EEEEecCCCCHHH
Confidence 6899999999998
No 411
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=39.46 E-value=16 Score=33.00 Aligned_cols=15 Identities=27% Similarity=0.169 Sum_probs=12.6
Q ss_pred cEEEEcCCCchHHHH
Q 007402 65 DVVARAKTGSGKTFA 79 (605)
Q Consensus 65 dvlv~a~TGsGKT~a 79 (605)
-+.+.+++|||||..
T Consensus 4 ~v~IvG~SGsGKSTL 18 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTL 18 (171)
T ss_dssp EEEEEESCHHHHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467899999999974
No 412
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=39.38 E-value=18 Score=40.72 Aligned_cols=26 Identities=46% Similarity=0.653 Sum_probs=21.5
Q ss_pred HHHHHHhCCCc--EEEEcCCCchHHHHH
Q 007402 55 ASIPLILEGKD--VVARAKTGSGKTFAY 80 (605)
Q Consensus 55 ~aIp~~l~gkd--vlv~a~TGsGKT~a~ 80 (605)
..|..+++|.+ |++-+.||||||...
T Consensus 453 ~~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 453 QLIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCceEEEEccCCCCCchhhcc
Confidence 36778889976 788899999999763
No 413
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=39.37 E-value=71 Score=36.77 Aligned_cols=55 Identities=18% Similarity=0.181 Sum_probs=42.0
Q ss_pred cCCCeEEEEecchhHHHHHHHHHH----HcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcC
Q 007402 281 LVQKKALIFTNTIDMAFRLKLFLE----KFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 341 (605)
Q Consensus 281 ~~~~k~IIFv~s~~~~~~L~~~L~----~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd 341 (605)
+.+..++|.++|..-|.+.+..+. .+|+.+.++.|+++...|.... .++|+++|.
T Consensus 118 L~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTp 176 (997)
T 2ipc_A 118 LTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTN 176 (997)
T ss_dssp TTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEH
T ss_pred HhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECc
Confidence 345679999999988877666554 4599999999999977665543 268888885
No 414
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=39.22 E-value=21 Score=32.57 Aligned_cols=56 Identities=13% Similarity=0.161 Sum_probs=37.1
Q ss_pred CCeEEEEecchhHHHH-HHHHHHHc---CCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 007402 283 QKKALIFTNTIDMAFR-LKLFLEKF---GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 342 (605)
Q Consensus 283 ~~k~IIFv~s~~~~~~-L~~~L~~~---gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~ 342 (605)
.+++||+|++...+.. +...+..+ ++.++.++|+.+...+...+. +..+|+|+|..
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~~ 141 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQ 141 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEHH
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECHH
Confidence 5689999999988877 66655554 678889988765443222111 24789999965
No 415
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=39.16 E-value=12 Score=33.62 Aligned_cols=18 Identities=17% Similarity=0.193 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCchHHHHH
Q 007402 63 GKDVVARAKTGSGKTFAY 80 (605)
Q Consensus 63 gkdvlv~a~TGsGKT~a~ 80 (605)
+.-+++.|+.|||||...
T Consensus 5 ~~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLS 22 (193)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 346899999999999843
No 416
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=38.81 E-value=81 Score=36.15 Aligned_cols=54 Identities=17% Similarity=0.137 Sum_probs=42.3
Q ss_pred CCCeEEEEecchhHHHHHHHHHH----HcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcC
Q 007402 282 VQKKALIFTNTIDMAFRLKLFLE----KFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 341 (605)
Q Consensus 282 ~~~k~IIFv~s~~~~~~L~~~L~----~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd 341 (605)
.+..++|.++|...|.+.+..+. .+|+.+.++.|+++...|.... .++|+++|+
T Consensus 151 ~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTp 208 (922)
T 1nkt_A 151 AGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTN 208 (922)
T ss_dssp TTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred hCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECc
Confidence 35679999999998877766665 4599999999999987665433 279999996
No 417
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=38.79 E-value=50 Score=36.47 Aligned_cols=55 Identities=20% Similarity=0.262 Sum_probs=42.2
Q ss_pred CeEEEEecchhHHHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 007402 284 KKALIFTNTIDMAFRLKLFLEKF----GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 342 (605)
Q Consensus 284 ~k~IIFv~s~~~~~~L~~~L~~~----gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIaTd~ 342 (605)
+++||.++++..+......++.+ ++.+..++|+.+...+...+ .. ..+|+|+|..
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~---~~-~~~Iiv~Tp~ 120 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQI---VE-NNDIIILTPQ 120 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHH---HH-TCSEEEECHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHh---cc-CCCEEEECHH
Confidence 78999999999888888777766 79999999998654332222 22 4899999975
No 418
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=38.64 E-value=25 Score=43.40 Aligned_cols=100 Identities=17% Similarity=0.185 Sum_probs=56.4
Q ss_pred HHHHHhC------CCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCC
Q 007402 56 SIPLILE------GKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQ 129 (605)
Q Consensus 56 aIp~~l~------gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~ 129 (605)
.+..+|- |+-+.+.+|.|||||...+ +++..... .+..++++.+--+|.... ++++
T Consensus 1418 ~lD~~lg~gG~prg~~iei~g~~~sGkttl~~-~~~a~~~~-------~g~~~~~i~~e~~~~~~~---~~~~------- 1479 (1706)
T 3cmw_A 1418 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTL-QVIAAAQR-------EGKTCAFIDAEHALDPIY---ARKL------- 1479 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHH-HHHHHHHH-------TTCCEEEECTTSCCCHHH---HHHT-------
T ss_pred HHHHhcCCCCCCCCCEEEEEcCCCCCHHHHHH-HHHHHHHh-------cCCeEEEEecCCCCCHHH---HHHc-------
Confidence 4455555 3569999999999997654 44443333 256688888755554433 2222
Q ss_pred cceEEEEEeCCCCHHHHHHHHcCCCcEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhcc
Q 007402 130 VQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLS 195 (605)
Q Consensus 130 ~~i~v~~l~~~~~~~~~~~~l~~~~dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~ 195 (605)
++. . -+++|+-|+.--++|.--. ....-..+++||||.+..+..
T Consensus 1480 -Gv~---------~----------~~l~~~~p~~~e~~l~~~~--~~~~s~~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1480 -GVD---------I----------DNLLCSQPDTGEQALEICD--ALARSGAVDVIVVDSVAALTP 1523 (1706)
T ss_dssp -TCC---------G----------GGCEEECCSSHHHHHHHHH--HHHHHTCCSEEEESCSTTCCC
T ss_pred -CCC---------H----------HHeEEeCCCcHHHHHHHHH--HHHHcCCCCEEEEccHHhCCc
Confidence 111 1 1367777765333222100 001113477999999987764
No 419
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=38.60 E-value=15 Score=33.13 Aligned_cols=20 Identities=20% Similarity=0.175 Sum_probs=16.5
Q ss_pred hCCCcEEEEcCCCchHHHHH
Q 007402 61 LEGKDVVARAKTGSGKTFAY 80 (605)
Q Consensus 61 l~gkdvlv~a~TGsGKT~a~ 80 (605)
..+.-+++.|+.|||||...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35667999999999999843
No 420
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=38.55 E-value=13 Score=33.39 Aligned_cols=18 Identities=22% Similarity=0.147 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCchHHHHH
Q 007402 63 GKDVVARAKTGSGKTFAY 80 (605)
Q Consensus 63 gkdvlv~a~TGsGKT~a~ 80 (605)
+.-+++.+++|||||...
T Consensus 3 ~~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 345889999999999854
No 421
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=38.31 E-value=31 Score=28.19 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=31.6
Q ss_pred CCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCC
Q 007402 283 QKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELP 318 (605)
Q Consensus 283 ~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~ 318 (605)
..+++|||.+-.++...+..|...|+....|.|++.
T Consensus 56 ~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 56 DKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp SSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred CCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 568999999999999999999999986688889874
No 422
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=38.11 E-value=14 Score=34.74 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=15.9
Q ss_pred HhCCCcEEEEcCCCchHHHH
Q 007402 60 ILEGKDVVARAKTGSGKTFA 79 (605)
Q Consensus 60 ~l~gkdvlv~a~TGsGKT~a 79 (605)
+-.|+-+++.||.|||||..
T Consensus 13 ~~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp --CCCEEEEECCTTSCHHHH
T ss_pred CCCCcEEEEECCCCCCHHHH
Confidence 34677889999999999983
No 423
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=38.10 E-value=22 Score=32.55 Aligned_cols=42 Identities=12% Similarity=0.147 Sum_probs=26.1
Q ss_pred CCCceEEEEeCcchh--ccCCcHHHHHHHHhhCCCCceEEEEeeecC
Q 007402 179 SDSLKILVLDEADLL--LSYGYEDDLKALSAVIPRGCQCLLMSATSS 223 (605)
Q Consensus 179 l~~l~~lViDEad~i--~~~g~~~~l~~i~~~lp~~~q~il~SATl~ 223 (605)
..+.+++|+||+..+ .+..+.+.+..++... ..+++-++|.+
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~---~~~ilgti~vs 146 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTP---GTIILGTIPVP 146 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCS---SCCEEEECCCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhCC---CcEEEEEeecC
Confidence 466789999998777 3344555566665532 23454466753
No 424
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=38.05 E-value=19 Score=32.54 Aligned_cols=15 Identities=27% Similarity=0.490 Sum_probs=12.9
Q ss_pred cEEEEcCCCchHHHH
Q 007402 65 DVVARAKTGSGKTFA 79 (605)
Q Consensus 65 dvlv~a~TGsGKT~a 79 (605)
.+.+.+|.|||||..
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467899999999984
No 425
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=37.77 E-value=10 Score=34.73 Aligned_cols=17 Identities=24% Similarity=0.235 Sum_probs=14.5
Q ss_pred CcEEEEcCCCchHHHHH
Q 007402 64 KDVVARAKTGSGKTFAY 80 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a~ 80 (605)
.-+++.++.|||||...
T Consensus 21 ~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46899999999999843
No 426
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=37.59 E-value=1.3e+02 Score=24.61 Aligned_cols=60 Identities=10% Similarity=0.052 Sum_probs=41.3
Q ss_pred hcCCCeEEEEe------cchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEE
Q 007402 280 ELVQKKALIFT------NTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIA 339 (605)
Q Consensus 280 ~~~~~k~IIFv------~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIa 339 (605)
.....+++||. ++.-.|.+.+.+|...|+....++=......+..+.+......+..++-
T Consensus 12 ~i~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~~g~~tvP~ifi 77 (111)
T 3zyw_A 12 LTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSSWPTYPQLYV 77 (111)
T ss_dssp HHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEEE
T ss_pred HHhcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHHHCCCCCCEEEE
Confidence 33467899998 5788999999999999998877765555555554444333344544443
No 427
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=37.54 E-value=25 Score=30.45 Aligned_cols=36 Identities=11% Similarity=0.176 Sum_probs=31.2
Q ss_pred CCeEEEEecchhHHHHHHHHHHHcCCc-EEEEcCCCC
Q 007402 283 QKKALIFTNTIDMAFRLKLFLEKFGIK-SAILNAELP 318 (605)
Q Consensus 283 ~~k~IIFv~s~~~~~~L~~~L~~~gi~-~~~l~~~l~ 318 (605)
..+++|||.+-.++......|...|+. +..|.|++.
T Consensus 56 ~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 92 (141)
T 3ilm_A 56 SRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 92 (141)
T ss_dssp TSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHHH
T ss_pred CCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 467899999999999999999999995 888988863
No 428
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=37.45 E-value=14 Score=34.16 Aligned_cols=16 Identities=25% Similarity=0.337 Sum_probs=13.6
Q ss_pred cEEEEcCCCchHHHHH
Q 007402 65 DVVARAKTGSGKTFAY 80 (605)
Q Consensus 65 dvlv~a~TGsGKT~a~ 80 (605)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQA 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999854
No 429
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=37.05 E-value=13 Score=34.02 Aligned_cols=19 Identities=26% Similarity=0.298 Sum_probs=15.8
Q ss_pred CCCcEEEEcCCCchHHHHH
Q 007402 62 EGKDVVARAKTGSGKTFAY 80 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a~ 80 (605)
.|.-+.+.++.|||||...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4667889999999999743
No 430
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=37.02 E-value=16 Score=33.30 Aligned_cols=18 Identities=33% Similarity=0.309 Sum_probs=15.5
Q ss_pred CCCcEEEEcCCCchHHHH
Q 007402 62 EGKDVVARAKTGSGKTFA 79 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a 79 (605)
.|.-+++.|+.|||||..
T Consensus 3 ~~~~I~l~G~~GsGKsT~ 20 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQ 20 (204)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 466789999999999984
No 431
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=37.01 E-value=14 Score=33.25 Aligned_cols=16 Identities=25% Similarity=0.335 Sum_probs=13.4
Q ss_pred CcEEEEcCCCchHHHH
Q 007402 64 KDVVARAKTGSGKTFA 79 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a 79 (605)
.-+++.+|.|||||..
T Consensus 3 ~ii~l~G~~GaGKSTl 18 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTT 18 (189)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCcHHHH
Confidence 3468999999999984
No 432
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=36.98 E-value=21 Score=33.39 Aligned_cols=21 Identities=19% Similarity=0.037 Sum_probs=16.6
Q ss_pred CCCcEEEEcCCCchHHHHHHH
Q 007402 62 EGKDVVARAKTGSGKTFAYLL 82 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a~~l 82 (605)
.|.-+++.+|+|+|||.....
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~ 43 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHT 43 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHH
Confidence 356789999999999975444
No 433
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=36.78 E-value=15 Score=33.28 Aligned_cols=19 Identities=26% Similarity=0.225 Sum_probs=15.6
Q ss_pred CCCcEEEEcCCCchHHHHH
Q 007402 62 EGKDVVARAKTGSGKTFAY 80 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a~ 80 (605)
.+.-+++.|++|||||...
T Consensus 11 ~~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp HSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3567899999999999843
No 434
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=36.76 E-value=14 Score=33.07 Aligned_cols=16 Identities=31% Similarity=0.264 Sum_probs=13.8
Q ss_pred cEEEEcCCCchHHHHH
Q 007402 65 DVVARAKTGSGKTFAY 80 (605)
Q Consensus 65 dvlv~a~TGsGKT~a~ 80 (605)
-+++.+++|||||...
T Consensus 8 ~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4889999999999843
No 435
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=36.67 E-value=15 Score=34.59 Aligned_cols=18 Identities=33% Similarity=0.407 Sum_probs=11.5
Q ss_pred CCCcEEEEcCCCchHHHH
Q 007402 62 EGKDVVARAKTGSGKTFA 79 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a 79 (605)
.|+-+.+.||+|||||..
T Consensus 26 ~G~ii~l~Gp~GsGKSTl 43 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTV 43 (231)
T ss_dssp CCCEEEEECSCC----CH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567788999999999984
No 436
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=36.62 E-value=19 Score=32.99 Aligned_cols=18 Identities=28% Similarity=0.100 Sum_probs=14.4
Q ss_pred CCCcEEEEcCCCchHHHH
Q 007402 62 EGKDVVARAKTGSGKTFA 79 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a 79 (605)
.|.-+.+.|++|||||..
T Consensus 5 ~~~~i~i~G~~GsGKSTl 22 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTL 22 (211)
T ss_dssp CCEEEEEEESTTSSHHHH
T ss_pred CcEEEEEECCCCCCHHHH
Confidence 344577999999999984
No 437
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=36.60 E-value=74 Score=30.93 Aligned_cols=49 Identities=18% Similarity=0.116 Sum_probs=40.5
Q ss_pred CCCeEEEEec---------------------chhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHc
Q 007402 282 VQKKALIFTN---------------------TIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 331 (605)
Q Consensus 282 ~~~k~IIFv~---------------------s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~ 331 (605)
..|-+|||.| +...+..|...|+.+|+.+. .+..++..+-..++++|.+
T Consensus 16 ~rG~aLIInn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~~~~ 85 (271)
T 3h11_B 16 PRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIK-PHDDCTVEQIYEILKIYQL 85 (271)
T ss_dssp SCCEEEEEECCCCSHHHHTCGGGTTCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHH
T ss_pred CCCEEEEEEchhcCcccccccccccCCCCCCcHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHHHHH
Confidence 3678999988 34679999999999999975 4567999999999999965
No 438
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=36.45 E-value=15 Score=32.40 Aligned_cols=17 Identities=18% Similarity=0.182 Sum_probs=14.3
Q ss_pred CcEEEEcCCCchHHHHH
Q 007402 64 KDVVARAKTGSGKTFAY 80 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a~ 80 (605)
+-+++.++.|||||...
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVG 19 (173)
T ss_dssp CCEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45899999999999843
No 439
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=36.20 E-value=14 Score=33.03 Aligned_cols=16 Identities=19% Similarity=0.194 Sum_probs=13.5
Q ss_pred cEEEEcCCCchHHHHH
Q 007402 65 DVVARAKTGSGKTFAY 80 (605)
Q Consensus 65 dvlv~a~TGsGKT~a~ 80 (605)
-+++.|+.|||||...
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999743
No 440
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=36.11 E-value=14 Score=37.76 Aligned_cols=16 Identities=25% Similarity=0.430 Sum_probs=13.7
Q ss_pred cEEEEcCCCchHHHHH
Q 007402 65 DVVARAKTGSGKTFAY 80 (605)
Q Consensus 65 dvlv~a~TGsGKT~a~ 80 (605)
-.++.+|||||||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5779999999999854
No 441
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=35.85 E-value=14 Score=32.98 Aligned_cols=18 Identities=33% Similarity=0.398 Sum_probs=15.2
Q ss_pred CCCcEEEEcCCCchHHHH
Q 007402 62 EGKDVVARAKTGSGKTFA 79 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a 79 (605)
.|.-+++.++.|||||..
T Consensus 4 ~g~~i~l~G~~GsGKST~ 21 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTV 21 (179)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 456688999999999974
No 442
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=35.84 E-value=19 Score=36.73 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=0.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHh
Q 007402 66 VVARAKTGSGKTFAYLLPLLHRLF 89 (605)
Q Consensus 66 vlv~a~TGsGKT~a~~lpil~~ll 89 (605)
.++.|+||+|||. ++-++..++
T Consensus 28 ~vi~G~NGaGKT~--ileAI~~~l 49 (371)
T 3auy_A 28 VAIIGENGSGKSS--IFEAVFFAL 49 (371)
T ss_dssp EEEEECTTSSHHH--HHHHHHHHH
T ss_pred EEEECCCCCCHHH--HHHHHHHHH
No 443
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=35.77 E-value=17 Score=32.37 Aligned_cols=17 Identities=35% Similarity=0.360 Sum_probs=14.3
Q ss_pred CcEEEEcCCCchHHHHH
Q 007402 64 KDVVARAKTGSGKTFAY 80 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a~ 80 (605)
+.+++.++.|||||...
T Consensus 5 ~~i~i~G~~GsGKsTla 21 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 36899999999999743
No 444
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=35.76 E-value=15 Score=33.90 Aligned_cols=16 Identities=25% Similarity=0.272 Sum_probs=13.6
Q ss_pred cEEEEcCCCchHHHHH
Q 007402 65 DVVARAKTGSGKTFAY 80 (605)
Q Consensus 65 dvlv~a~TGsGKT~a~ 80 (605)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQG 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999854
No 445
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=35.69 E-value=15 Score=34.44 Aligned_cols=18 Identities=28% Similarity=0.148 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCchHHHHH
Q 007402 63 GKDVVARAKTGSGKTFAY 80 (605)
Q Consensus 63 gkdvlv~a~TGsGKT~a~ 80 (605)
+.-+++.|++|||||...
T Consensus 7 ~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456899999999999843
No 446
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=35.56 E-value=1.4e+02 Score=24.08 Aligned_cols=59 Identities=15% Similarity=0.106 Sum_probs=41.0
Q ss_pred cCCCeEEEEec------chhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEEE
Q 007402 281 LVQKKALIFTN------TIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIA 339 (605)
Q Consensus 281 ~~~~k~IIFv~------s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLIa 339 (605)
....+++||.. ..-.|.+.+.+|.+.|+....++=......+..+.+......+..++-
T Consensus 15 i~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g~~tvP~ifi 79 (109)
T 3ipz_A 15 VNSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNWPTFPQLYI 79 (109)
T ss_dssp HTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCSSSCEEEE
T ss_pred HccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHCCCCCCeEEE
Confidence 34678999998 488999999999999998877765444455555444444444554443
No 447
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=35.55 E-value=1.3e+02 Score=23.97 Aligned_cols=56 Identities=11% Similarity=0.133 Sum_probs=41.1
Q ss_pred CCeEEEEe------cchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEE
Q 007402 283 QKKALIFT------NTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLI 338 (605)
Q Consensus 283 ~~k~IIFv------~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLI 338 (605)
..+++||. ++.-.|.++..+|.+.++....++-......+..+.+.+....+..++
T Consensus 16 ~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v~ 77 (105)
T 2yan_A 16 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWPTYPQLY 77 (105)
T ss_dssp SSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEE
T ss_pred cCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCCCCCCeEE
Confidence 45788888 567889999999999999888777666666666665556544555554
No 448
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=35.46 E-value=16 Score=32.20 Aligned_cols=17 Identities=29% Similarity=0.276 Sum_probs=14.8
Q ss_pred CcEEEEcCCCchHHHHH
Q 007402 64 KDVVARAKTGSGKTFAY 80 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a~ 80 (605)
+.+++.++.|||||.+.
T Consensus 8 ~~i~l~G~~GsGKSTva 24 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLA 24 (168)
T ss_dssp CEEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 57899999999999854
No 449
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=35.41 E-value=18 Score=32.33 Aligned_cols=17 Identities=29% Similarity=0.233 Sum_probs=14.3
Q ss_pred CcEEEEcCCCchHHHHH
Q 007402 64 KDVVARAKTGSGKTFAY 80 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a~ 80 (605)
.-+++.+++|||||...
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG 19 (184)
T ss_dssp CSEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35899999999999854
No 450
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=34.97 E-value=13 Score=36.60 Aligned_cols=16 Identities=31% Similarity=0.391 Sum_probs=13.7
Q ss_pred CcEEEEcCCCchHHHH
Q 007402 64 KDVVARAKTGSGKTFA 79 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a 79 (605)
.-+++.|++|||||..
T Consensus 34 ~livl~G~sGsGKSTl 49 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSL 49 (287)
T ss_dssp EEEEEECCTTSCTHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3589999999999974
No 451
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=34.91 E-value=16 Score=38.47 Aligned_cols=18 Identities=33% Similarity=0.353 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCchHHHHH
Q 007402 63 GKDVVARAKTGSGKTFAY 80 (605)
Q Consensus 63 gkdvlv~a~TGsGKT~a~ 80 (605)
.+++++.+|+|+|||...
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 468999999999999843
No 452
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=34.89 E-value=18 Score=33.67 Aligned_cols=18 Identities=22% Similarity=0.209 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCchHHHHH
Q 007402 63 GKDVVARAKTGSGKTFAY 80 (605)
Q Consensus 63 gkdvlv~a~TGsGKT~a~ 80 (605)
+..+++.|+.|||||...
T Consensus 4 ~~~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQA 21 (220)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456899999999999843
No 453
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=34.85 E-value=31 Score=31.10 Aligned_cols=15 Identities=27% Similarity=-0.013 Sum_probs=12.5
Q ss_pred cEEEEcCCCchHHHH
Q 007402 65 DVVARAKTGSGKTFA 79 (605)
Q Consensus 65 dvlv~a~TGsGKT~a 79 (605)
-+.+.++.|||||..
T Consensus 6 ~i~i~G~sGsGKTTl 20 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL 20 (169)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367899999999973
No 454
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=34.84 E-value=1.2e+02 Score=31.84 Aligned_cols=107 Identities=9% Similarity=0.076 Sum_probs=62.6
Q ss_pred CCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHH-
Q 007402 72 TGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL- 150 (605)
Q Consensus 72 TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l- 150 (605)
..++|..+ ++-++..+.. .+.++||.+.+++.+..+.+.+.... ++.+..++|+++.......+
T Consensus 322 ~~s~K~~~-l~~~l~~~~~-------~~~k~lvF~~~~~~~~~l~~~l~~~~-------~~~~~~~~g~~~~~~R~~~~~ 386 (500)
T 1z63_A 322 RRSGKMIR-TMEIIEEALD-------EGDKIAIFTQFVDMGKIIRNIIEKEL-------NTEVPFLYGELSKKERDDIIS 386 (500)
T ss_dssp TTCHHHHH-HHHHHHHHHT-------TTCCEEEECSCHHHHHHHHHHHHHHH-------TCCCCEEETTSCHHHHHHHHH
T ss_pred hcchhHHH-HHHHHHHHHc-------cCCcEEEEEehHHHHHHHHHHHHHhh-------CCCeEEEECCCCHHHHHHHHH
Confidence 34677653 3334443332 25679999999998888887776542 46677788998866544433
Q ss_pred --cCC--Cc-EEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCcHHHHHHHHh
Q 007402 151 --AGP--PD-IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 207 (605)
Q Consensus 151 --~~~--~d-IvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~~~l~~i~~ 207 (605)
..+ .. ++++|- .+..| +++...+.+|+=+.. |.....++.+-+
T Consensus 387 ~F~~~~~~~vil~st~-----~~~~G-----lnl~~~~~vi~~d~~----~~~~~~~Q~~gR 434 (500)
T 1z63_A 387 KFQNNPSVKFIVLSVK-----AGGFG-----INLTSANRVIHFDRW----WNPAVEDQATDR 434 (500)
T ss_dssp HHHHCTTCCCCEEECC-----CC-CC-----CCCTTCSEEEESSCC----SCC---CHHHHT
T ss_pred HhcCCCCCCEEEEecc-----cccCC-----CchhhCCEEEEeCCC----CCcchHHHHHHH
Confidence 222 33 567762 12223 677778888875543 444444555544
No 455
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=34.54 E-value=27 Score=35.22 Aligned_cols=43 Identities=9% Similarity=-0.090 Sum_probs=23.9
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCc
Q 007402 64 KDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPT 108 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPt 108 (605)
.-+++.|++|+|||...+-.+....+.. .....+..++++.-.
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~~~~~~--~~gg~~~~vlyi~~E 165 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVTAQLPG--AGGYPGGKIIFIDTE 165 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHHTTSCB--TTTBCCCEEEEEESS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhccc--ccCCCCCeEEEEECC
Confidence 4578999999999975433333212210 001124567777643
No 456
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=34.50 E-value=21 Score=35.78 Aligned_cols=16 Identities=31% Similarity=0.370 Sum_probs=14.3
Q ss_pred CcEEEEcCCCchHHHH
Q 007402 64 KDVVARAKTGSGKTFA 79 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a 79 (605)
..+++.+|+|+|||..
T Consensus 52 ~~~ll~Gp~G~GKTTL 67 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTL 67 (334)
T ss_dssp CCEEEESSTTSSHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 5799999999999984
No 457
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=34.48 E-value=20 Score=37.99 Aligned_cols=17 Identities=29% Similarity=0.304 Sum_probs=15.0
Q ss_pred CcEEEEcCCCchHHHHH
Q 007402 64 KDVVARAKTGSGKTFAY 80 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a~ 80 (605)
.++|+.||+|+|||...
T Consensus 202 ~~~LL~G~pG~GKT~la 218 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIA 218 (468)
T ss_dssp CEEEEESCTTTTTHHHH
T ss_pred CCeEEECCCCCCHHHHH
Confidence 58999999999999853
No 458
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=34.43 E-value=25 Score=35.87 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=17.4
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhh
Q 007402 64 KDVVARAKTGSGKTFAYLLPLLHRLFN 90 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a~~lpil~~ll~ 90 (605)
.-+.+.+++|||||.. +-.+..++.
T Consensus 158 ~vi~lvG~nGsGKTTl--l~~Lag~l~ 182 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTS--LGKLAHRLK 182 (359)
T ss_dssp EEEEEECCTTSCHHHH--HHHHHHHHH
T ss_pred eEEEEEcCCCChHHHH--HHHHHhhcc
Confidence 3477999999999984 334444443
No 459
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=34.30 E-value=34 Score=34.90 Aligned_cols=45 Identities=20% Similarity=0.178 Sum_probs=27.9
Q ss_pred HHHHHhC------CCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCc
Q 007402 56 SIPLILE------GKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPT 108 (605)
Q Consensus 56 aIp~~l~------gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPt 108 (605)
.+..+|. |.-+++.+|+|+|||.. ++.++..+.. .+..++++...
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTL-al~la~~~~~-------~gg~VlyId~E 98 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTL-ALHAIAEAQK-------MGGVAAFIDAE 98 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHH-HHHHHHHHHH-------TTCCEEEEESS
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHH-HHHHHHHHHh-------cCCeEEEEecc
Confidence 4555555 35688999999999964 4444444332 13457776543
No 460
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=34.25 E-value=17 Score=33.17 Aligned_cols=17 Identities=18% Similarity=0.223 Sum_probs=14.1
Q ss_pred CcEEEEcCCCchHHHHH
Q 007402 64 KDVVARAKTGSGKTFAY 80 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a~ 80 (605)
.-+++.|+.|||||...
T Consensus 16 ~~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35889999999999743
No 461
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=34.21 E-value=25 Score=38.50 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=19.5
Q ss_pred HHHHHhCCCcEEEEcCCCchHHHH
Q 007402 56 SIPLILEGKDVVARAKTGSGKTFA 79 (605)
Q Consensus 56 aIp~~l~gkdvlv~a~TGsGKT~a 79 (605)
.-..+..|..+++.+|+|+|||..
T Consensus 53 l~~~i~~g~~vll~Gp~GtGKTtl 76 (604)
T 3k1j_A 53 IKTAANQKRHVLLIGEPGTGKSML 76 (604)
T ss_dssp HHHHHHTTCCEEEECCTTSSHHHH
T ss_pred ccccccCCCEEEEEeCCCCCHHHH
Confidence 334456788999999999999984
No 462
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=34.11 E-value=19 Score=33.48 Aligned_cols=18 Identities=22% Similarity=0.178 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCchHHHHH
Q 007402 63 GKDVVARAKTGSGKTFAY 80 (605)
Q Consensus 63 gkdvlv~a~TGsGKT~a~ 80 (605)
+..+++.|+.|||||...
T Consensus 5 ~~~I~l~G~~GsGKsT~~ 22 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQC 22 (222)
T ss_dssp SCCEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 357999999999999844
No 463
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=33.82 E-value=24 Score=32.55 Aligned_cols=24 Identities=21% Similarity=0.119 Sum_probs=17.2
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhh
Q 007402 65 DVVARAKTGSGKTFAYLLPLLHRLFN 90 (605)
Q Consensus 65 dvlv~a~TGsGKT~a~~lpil~~ll~ 90 (605)
-.++.+|+|+|||.. +-++..++.
T Consensus 25 ~~~I~G~NgsGKSti--l~ai~~~l~ 48 (203)
T 3qks_A 25 INLIIGQNGSGKSSL--LDAILVGLY 48 (203)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHHH
T ss_pred eEEEEcCCCCCHHHH--HHHHHHHhc
Confidence 468999999999984 444444444
No 464
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=33.75 E-value=1.4e+02 Score=27.13 Aligned_cols=49 Identities=20% Similarity=0.230 Sum_probs=40.5
Q ss_pred CCCeEEEEecch--------------hHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHc
Q 007402 282 VQKKALIFTNTI--------------DMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 331 (605)
Q Consensus 282 ~~~k~IIFv~s~--------------~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~ 331 (605)
..|.+|||.|.. ..+..|...|+.+|+.+.+++ .++..+-...+++|.+
T Consensus 43 ~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LGF~V~~~~-dlt~~em~~~l~~~~~ 105 (179)
T 3p45_A 43 RRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFN-DLKAEELLLKIHEVST 105 (179)
T ss_dssp BCCEEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEEEEE-SCCHHHHHHHHHHHHT
T ss_pred ccCEEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEe-CCCHHHHHHHHHHHhh
Confidence 367899998852 478999999999999987654 7999998899999965
No 465
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=33.71 E-value=17 Score=31.80 Aligned_cols=16 Identities=19% Similarity=0.005 Sum_probs=13.5
Q ss_pred cEEEEcCCCchHHHHH
Q 007402 65 DVVARAKTGSGKTFAY 80 (605)
Q Consensus 65 dvlv~a~TGsGKT~a~ 80 (605)
.+++.++.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3789999999999843
No 466
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=33.51 E-value=1.6e+02 Score=32.25 Aligned_cols=108 Identities=15% Similarity=0.104 Sum_probs=65.4
Q ss_pred CCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHHHHHHHHHHHHHHHHhcCCcceEEEEEeCCCCHHHHHHHH-
Q 007402 72 TGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTRELCQQVYSEVMALIELCKGQVQLKVVQLTSSMPASDLRAAL- 150 (605)
Q Consensus 72 TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreLa~Qv~~~~~~l~~~~~~~~~i~v~~l~~~~~~~~~~~~l- 150 (605)
..|||..+ +.-++..+.. ..+.++||.+.++..+..+...+... ++.+..++|+++.......+
T Consensus 396 ~~s~K~~~-l~~ll~~~~~------~~~~k~lIFs~~~~~~~~l~~~l~~~--------g~~~~~l~G~~~~~~R~~~i~ 460 (644)
T 1z3i_X 396 QLSGKMLV-LDYILAMTRT------TTSDKVVLVSNYTQTLDLFEKLCRNR--------RYLYVRLDGTMSIKKRAKIVE 460 (644)
T ss_dssp GGSHHHHH-HHHHHHHHHH------HCCCEEEEEESCHHHHHHHHHHHHHH--------TCCEEEECSSCCHHHHHHHHH
T ss_pred ccChHHHH-HHHHHHHHhh------cCCCEEEEEEccHHHHHHHHHHHHHC--------CCCEEEEeCCCCHHHHHHHHH
Confidence 45888753 3333333322 12567999999998887776665543 67888999999876554433
Q ss_pred --cCC-C---cEEEECCchHHHHHhcCCCCCcccCCCceEEEEeCcchhccCCcHHHHHHHHhh
Q 007402 151 --AGP-P---DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 208 (605)
Q Consensus 151 --~~~-~---dIvV~TP~~l~~~l~~~~~~~~~~l~~l~~lViDEad~i~~~g~~~~l~~i~~~ 208 (605)
..+ . -++++| ..... .+.+...+.||+=+.+ |....+.+.+-+.
T Consensus 461 ~F~~~~~~~~v~L~st-----~a~g~-----Glnl~~a~~Vi~~d~~----wnp~~~~Qa~gR~ 510 (644)
T 1z3i_X 461 RFNNPSSPEFIFMLSS-----KAGGC-----GLNLIGANRLVMFDPD----WNPANDEQAMARV 510 (644)
T ss_dssp HHHSTTCCCCEEEEEG-----GGSCT-----TCCCTTEEEEEECSCC----SSHHHHHHHHTTS
T ss_pred HhcCCCCCcEEEEEec-----ccccC-----CcccccCCEEEEECCC----CCccHHHHHHHhh
Confidence 232 2 266677 22222 3677778888765443 4555555555443
No 467
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=33.23 E-value=1.9e+02 Score=25.62 Aligned_cols=18 Identities=39% Similarity=0.305 Sum_probs=12.2
Q ss_pred EEcCCCchHHHHHHHHHH
Q 007402 68 ARAKTGSGKTFAYLLPLL 85 (605)
Q Consensus 68 v~a~TGsGKT~a~~lpil 85 (605)
.....|+|||...+-.+.
T Consensus 7 ~s~kgG~GKTt~a~~la~ 24 (206)
T 4dzz_A 7 LNPKGGSGKTTAVINIAT 24 (206)
T ss_dssp CCSSTTSSHHHHHHHHHH
T ss_pred EeCCCCccHHHHHHHHHH
Confidence 446788999986544433
No 468
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=33.11 E-value=17 Score=32.74 Aligned_cols=19 Identities=37% Similarity=0.293 Sum_probs=15.5
Q ss_pred CCCcEEEEcCCCchHHHHH
Q 007402 62 EGKDVVARAKTGSGKTFAY 80 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a~ 80 (605)
.|.-+++.++.|||||...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3556899999999999843
No 469
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=32.95 E-value=17 Score=33.20 Aligned_cols=19 Identities=26% Similarity=0.295 Sum_probs=15.5
Q ss_pred CCCcEEEEcCCCchHHHHH
Q 007402 62 EGKDVVARAKTGSGKTFAY 80 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a~ 80 (605)
.|.-+++.|+.|||||...
T Consensus 3 ~~~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH
Confidence 3556899999999999843
No 470
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=32.79 E-value=17 Score=38.74 Aligned_cols=53 Identities=17% Similarity=0.311 Sum_probs=30.1
Q ss_pred cccCcccCCCCHHHHHHHHHC--CCCCChHHHHHHHHHHhCCCcEEEEcCCCchHHHH
Q 007402 24 EEKSFEELGLDLRLVHALNKK--GIQKPTLIQQASIPLILEGKDVVARAKTGSGKTFA 79 (605)
Q Consensus 24 ~~~~f~~~~L~~~l~~al~~~--g~~~pt~iQ~~aIp~~l~gkdvlv~a~TGsGKT~a 79 (605)
+..+|+++.-.+...+.|.++ .+..|..++.-.+ --.+.+++.+|+|+|||..
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~---~~p~gvLL~GppGtGKT~L 65 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGA---RMPKGILLVGPPGTGKTLL 65 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTC---CCCSEEEEECCTTSSHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCC---CCCCeEEEECCCCCCHHHH
Confidence 456899887555555555442 1222222211100 0125699999999999984
No 471
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=32.76 E-value=18 Score=33.05 Aligned_cols=15 Identities=20% Similarity=0.328 Sum_probs=13.0
Q ss_pred cEEEEcCCCchHHHH
Q 007402 65 DVVARAKTGSGKTFA 79 (605)
Q Consensus 65 dvlv~a~TGsGKT~a 79 (605)
-+.+.|+.|||||..
T Consensus 3 ~i~i~G~~GsGKSTl 17 (204)
T 2if2_A 3 RIGLTGNIGCGKSTV 17 (204)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 478999999999974
No 472
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=32.74 E-value=23 Score=33.27 Aligned_cols=19 Identities=26% Similarity=0.312 Sum_probs=15.7
Q ss_pred CCCcEEEEcCCCchHHHHH
Q 007402 62 EGKDVVARAKTGSGKTFAY 80 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a~ 80 (605)
.+..+++.+++|||||...
T Consensus 15 ~~~~I~l~G~~GsGKsT~a 33 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQA 33 (233)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3467999999999999743
No 473
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=32.45 E-value=28 Score=29.75 Aligned_cols=36 Identities=6% Similarity=0.122 Sum_probs=31.3
Q ss_pred CCeEEEEecchhHHHHHHHHHHHcCCc-EEEEcCCCC
Q 007402 283 QKKALIFTNTIDMAFRLKLFLEKFGIK-SAILNAELP 318 (605)
Q Consensus 283 ~~k~IIFv~s~~~~~~L~~~L~~~gi~-~~~l~~~l~ 318 (605)
..+++|+|.+-.++......|.+.|+. +..|.|++.
T Consensus 91 ~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 127 (139)
T 3d1p_A 91 AKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMN 127 (139)
T ss_dssp TSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHH
T ss_pred CCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 468899999999999999999999995 888888863
No 474
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=32.35 E-value=20 Score=32.82 Aligned_cols=19 Identities=32% Similarity=0.312 Sum_probs=15.9
Q ss_pred CCCcEEEEcCCCchHHHHH
Q 007402 62 EGKDVVARAKTGSGKTFAY 80 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a~ 80 (605)
.|.-+++.|+.|||||...
T Consensus 9 ~~~~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQS 27 (212)
T ss_dssp CSCEEEEEESTTSSHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHH
Confidence 4567999999999999843
No 475
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=32.31 E-value=24 Score=34.26 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=18.3
Q ss_pred HhCCCcEEEEcCCCchHHHHHHH
Q 007402 60 ILEGKDVVARAKTGSGKTFAYLL 82 (605)
Q Consensus 60 ~l~gkdvlv~a~TGsGKT~a~~l 82 (605)
+..|.-+++.+|+|+|||.....
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~ 49 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQ 49 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHH
Confidence 44677899999999999975443
No 476
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=32.28 E-value=37 Score=42.68 Aligned_cols=44 Identities=18% Similarity=0.110 Sum_probs=30.6
Q ss_pred HHHHhC------CCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCc
Q 007402 57 IPLILE------GKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPT 108 (605)
Q Consensus 57 Ip~~l~------gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPt 108 (605)
+..+|. |+.+++.+|+|+|||..+.-.+.+... .+.+++++...
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~--------~G~~v~Fi~~e 1464 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR--------EGKTCAFIDAE 1464 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT--------TTCCEEEECTT
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH--------cCCcEEEEEcc
Confidence 555665 588999999999999865444444332 25668887754
No 477
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=32.25 E-value=23 Score=32.76 Aligned_cols=17 Identities=18% Similarity=0.245 Sum_probs=14.1
Q ss_pred CcEEEEcCCCchHHHHH
Q 007402 64 KDVVARAKTGSGKTFAY 80 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a~ 80 (605)
.-+.+.|++|||||...
T Consensus 6 ~~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLC 22 (227)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45789999999999843
No 478
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=32.19 E-value=20 Score=32.77 Aligned_cols=19 Identities=21% Similarity=0.251 Sum_probs=16.0
Q ss_pred CCCcEEEEcCCCchHHHHH
Q 007402 62 EGKDVVARAKTGSGKTFAY 80 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a~ 80 (605)
.+.-+++.|+.|||||...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQS 26 (215)
T ss_dssp CCCEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4667999999999999843
No 479
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=32.10 E-value=18 Score=46.90 Aligned_cols=20 Identities=25% Similarity=0.441 Sum_probs=17.2
Q ss_pred HhCCCcEEEEcCCCchHHHH
Q 007402 60 ILEGKDVVARAKTGSGKTFA 79 (605)
Q Consensus 60 ~l~gkdvlv~a~TGsGKT~a 79 (605)
+..++.+|+.||||+|||..
T Consensus 1264 l~~~~~vLL~GPpGtGKT~l 1283 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTMI 1283 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHHH
T ss_pred HHCCCeEEEECCCCCCHHHH
Confidence 44578999999999999974
No 480
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=32.00 E-value=29 Score=31.37 Aligned_cols=14 Identities=36% Similarity=0.325 Sum_probs=12.5
Q ss_pred cEEEEcCCCchHHH
Q 007402 65 DVVARAKTGSGKTF 78 (605)
Q Consensus 65 dvlv~a~TGsGKT~ 78 (605)
-+++.++.|||||.
T Consensus 8 ~i~i~G~sGsGKTT 21 (174)
T 1np6_A 8 LLAFAAWSGTGKTT 21 (174)
T ss_dssp EEEEECCTTSCHHH
T ss_pred EEEEEeCCCCCHHH
Confidence 47899999999997
No 481
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=31.88 E-value=22 Score=38.19 Aligned_cols=40 Identities=13% Similarity=0.146 Sum_probs=25.3
Q ss_pred CceEEEEeCcchhccCC--cHHHHHHHHhhCCCCceEEEEeeec
Q 007402 181 SLKILVLDEADLLLSYG--YEDDLKALSAVIPRGCQCLLMSATS 222 (605)
Q Consensus 181 ~l~~lViDEad~i~~~g--~~~~l~~i~~~lp~~~q~il~SATl 222 (605)
.-.+|||||+|.+.... ....+..++... ...+|+++++.
T Consensus 148 ~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~ 189 (516)
T 1sxj_A 148 KHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNER 189 (516)
T ss_dssp TSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCT
T ss_pred CCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCC
Confidence 45689999999987532 224444444442 35577777764
No 482
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=31.85 E-value=24 Score=32.34 Aligned_cols=19 Identities=26% Similarity=0.046 Sum_probs=15.2
Q ss_pred hCCCcEEEEcCCCchHHHH
Q 007402 61 LEGKDVVARAKTGSGKTFA 79 (605)
Q Consensus 61 l~gkdvlv~a~TGsGKT~a 79 (605)
-.+.-+.+.+++|||||..
T Consensus 19 ~~~~~i~i~G~~GsGKSTl 37 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTL 37 (207)
T ss_dssp CCCEEEEEEESTTSSHHHH
T ss_pred CCCeEEEEECCCCCCHHHH
Confidence 3455688999999999973
No 483
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=31.77 E-value=39 Score=33.04 Aligned_cols=49 Identities=16% Similarity=0.090 Sum_probs=42.8
Q ss_pred CCCeEEEEecchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHc
Q 007402 282 VQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 331 (605)
Q Consensus 282 ~~~k~IIFv~s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~ 331 (605)
..|-+|||.|....+..|...|+.+|+.+.+ +..++..+-...+.+|.+
T Consensus 42 ~rG~~LIinn~~~D~~~L~~~f~~LgF~V~~-~~dlt~~em~~~l~~~~~ 90 (272)
T 3h11_A 42 PLGICLIIDCIGNETELLRDTFTSLGYEVQK-FLHLSMHGISQILGQFAC 90 (272)
T ss_dssp SSEEEEEEESSCCCCSHHHHHHHHHTEEEEE-EESCBHHHHHHHHHHHHT
T ss_pred cceEEEEECCchHHHHHHHHHHHHCCCEEEE-eeCCCHHHHHHHHHHHHh
Confidence 4688999999999999999999999998765 557899999999999965
No 484
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=31.69 E-value=19 Score=32.52 Aligned_cols=15 Identities=20% Similarity=0.364 Sum_probs=13.0
Q ss_pred cEEEEcCCCchHHHH
Q 007402 65 DVVARAKTGSGKTFA 79 (605)
Q Consensus 65 dvlv~a~TGsGKT~a 79 (605)
-+++.|+.|||||..
T Consensus 2 ~I~i~G~~GsGKsT~ 16 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTI 16 (205)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCccCHHHH
Confidence 378999999999974
No 485
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=31.40 E-value=20 Score=32.12 Aligned_cols=15 Identities=33% Similarity=0.361 Sum_probs=13.0
Q ss_pred EEEEcCCCchHHHHH
Q 007402 66 VVARAKTGSGKTFAY 80 (605)
Q Consensus 66 vlv~a~TGsGKT~a~ 80 (605)
+++.|+.|||||...
T Consensus 3 I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 689999999999743
No 486
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=31.36 E-value=19 Score=34.59 Aligned_cols=16 Identities=19% Similarity=0.216 Sum_probs=13.9
Q ss_pred CcEEEEcCCCchHHHH
Q 007402 64 KDVVARAKTGSGKTFA 79 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a 79 (605)
.-+++.|++|||||..
T Consensus 5 ~lIvl~G~pGSGKSTl 20 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTF 20 (260)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred EEEEEEcCCCCCHHHH
Confidence 4589999999999974
No 487
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*
Probab=31.27 E-value=3.2e+02 Score=26.92 Aligned_cols=48 Identities=8% Similarity=0.102 Sum_probs=32.9
Q ss_pred hCCCcEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCC-eEEEEcCc---HHHHHHHHHHHHH
Q 007402 61 LEGKDVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAP-AALVLVPT---RELCQQVYSEVMA 121 (605)
Q Consensus 61 l~gkdvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~-~~LilvPt---reLa~Qv~~~~~~ 121 (605)
+.|+.+++.+.-|.|+..++.+.- .+. .+.|..-+ .+-+++..+.+..
T Consensus 152 l~gk~~lVlGaGG~g~aia~~L~~-------------~Ga~~V~i~nR~~~~~~~a~~la~~~~~ 203 (315)
T 3tnl_A 152 IIGKKMTICGAGGAATAICIQAAL-------------DGVKEISIFNRKDDFYANAEKTVEKINS 203 (315)
T ss_dssp CTTSEEEEECCSHHHHHHHHHHHH-------------TTCSEEEEEECSSTTHHHHHHHHHHHHH
T ss_pred ccCCEEEEECCChHHHHHHHHHHH-------------CCCCEEEEEECCCchHHHHHHHHHHhhh
Confidence 468899999887888887665431 143 56677777 7777777666654
No 488
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=31.12 E-value=20 Score=32.20 Aligned_cols=15 Identities=27% Similarity=0.370 Sum_probs=13.0
Q ss_pred EEEEcCCCchHHHHH
Q 007402 66 VVARAKTGSGKTFAY 80 (605)
Q Consensus 66 vlv~a~TGsGKT~a~ 80 (605)
+++.|+.|||||...
T Consensus 3 I~l~G~~GsGKsT~~ 17 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQI 17 (197)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 689999999999854
No 489
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=31.09 E-value=28 Score=30.85 Aligned_cols=26 Identities=23% Similarity=0.155 Sum_probs=18.3
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHHh
Q 007402 62 EGKDVVARAKTGSGKTFAYLLPLLHRLF 89 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a~~lpil~~ll 89 (605)
.|.-+.+.+|.|+|||. ++-++..++
T Consensus 32 ~Ge~v~L~G~nGaGKTT--Llr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTT--LTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHH--HHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHH--HHHHHHHhC
Confidence 45567799999999997 344444444
No 490
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=31.07 E-value=20 Score=32.75 Aligned_cols=14 Identities=43% Similarity=0.373 Sum_probs=12.4
Q ss_pred EEEEcCCCchHHHH
Q 007402 66 VVARAKTGSGKTFA 79 (605)
Q Consensus 66 vlv~a~TGsGKT~a 79 (605)
+.+.|+.|||||..
T Consensus 5 i~l~G~~GsGKST~ 18 (206)
T 1jjv_A 5 VGLTGGIGSGKTTI 18 (206)
T ss_dssp EEEECSTTSCHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 67899999999984
No 491
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=30.86 E-value=16 Score=32.47 Aligned_cols=19 Identities=21% Similarity=0.183 Sum_probs=11.2
Q ss_pred CCCcEEEEcCCCchHHHHH
Q 007402 62 EGKDVVARAKTGSGKTFAY 80 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~a~ 80 (605)
.+.-+++.++.|||||...
T Consensus 4 ~~~~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTA 22 (183)
T ss_dssp -CCEEEEECCC----CHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3566899999999999854
No 492
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=30.66 E-value=20 Score=33.10 Aligned_cols=16 Identities=13% Similarity=0.098 Sum_probs=13.5
Q ss_pred cEEEEcCCCchHHHHH
Q 007402 65 DVVARAKTGSGKTFAY 80 (605)
Q Consensus 65 dvlv~a~TGsGKT~a~ 80 (605)
.+++.++.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999843
No 493
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=30.64 E-value=43 Score=33.45 Aligned_cols=17 Identities=24% Similarity=0.239 Sum_probs=13.7
Q ss_pred cEEEEcCCCchHHHHHH
Q 007402 65 DVVARAKTGSGKTFAYL 81 (605)
Q Consensus 65 dvlv~a~TGsGKT~a~~ 81 (605)
-+.+.+++|+|||....
T Consensus 107 vI~ivG~~G~GKTT~~~ 123 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLA 123 (320)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47788999999997543
No 494
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=30.49 E-value=32 Score=36.82 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=17.3
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhh
Q 007402 64 KDVVARAKTGSGKTFAYLLPLLHRLFN 90 (605)
Q Consensus 64 kdvlv~a~TGsGKT~a~~lpil~~ll~ 90 (605)
.-+.+.|++|||||.. +-.+..++.
T Consensus 294 eVI~LVGpNGSGKTTL--l~~LAgll~ 318 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTT--IGKLARQFE 318 (503)
T ss_dssp EEEEEECCTTSSHHHH--HHHHHHHHH
T ss_pred eEEEEECCCcccHHHH--HHHHHHHhh
Confidence 3477999999999984 334444443
No 495
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=30.15 E-value=1.5e+02 Score=26.34 Aligned_cols=48 Identities=17% Similarity=0.112 Sum_probs=39.3
Q ss_pred CCeEEEEecc---------------------hhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHc
Q 007402 283 QKKALIFTNT---------------------IDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 331 (605)
Q Consensus 283 ~~k~IIFv~s---------------------~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~ 331 (605)
.|.+|||.|. ...+..|...|+.+|+.+. .+..++..+-..++++|.+
T Consensus 23 rG~~LIinn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~~~~ 91 (164)
T 1qtn_A 23 RGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIK-PHDDCTVEQIYEILKIYQL 91 (164)
T ss_dssp CCEEEEEECCCCHHHHHHCGGGTTCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHH
T ss_pred ceEEEEEechhcCCccccccccccCcCCCCcHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHH
Confidence 6788888873 5678899999999999975 4567888888889999964
No 496
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=30.05 E-value=32 Score=31.35 Aligned_cols=13 Identities=23% Similarity=0.363 Sum_probs=11.9
Q ss_pred EEEEcCCCchHHH
Q 007402 66 VVARAKTGSGKTF 78 (605)
Q Consensus 66 vlv~a~TGsGKT~ 78 (605)
+++.+++|||||.
T Consensus 2 ilV~Gg~~SGKS~ 14 (180)
T 1c9k_A 2 ILVTGGARSGKSR 14 (180)
T ss_dssp EEEEECTTSSHHH
T ss_pred EEEECCCCCcHHH
Confidence 6899999999996
No 497
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=29.89 E-value=55 Score=32.88 Aligned_cols=41 Identities=10% Similarity=0.003 Sum_probs=25.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEcCcHHH
Q 007402 65 DVVARAKTGSGKTFAYLLPLLHRLFNESSPKSKLAPAALVLVPTREL 111 (605)
Q Consensus 65 dvlv~a~TGsGKT~a~~lpil~~ll~~~~~~~~~~~~~LilvPtreL 111 (605)
-+++.+|+|+|||... +.++...... ..+.+++++..-..+
T Consensus 30 iteI~G~pGsGKTtL~-Lq~~~~~~~~-----g~g~~vlyId~E~s~ 70 (333)
T 3io5_A 30 LLILAGPSKSFKSNFG-LTMVSSYMRQ-----YPDAVCLFYDSEFGI 70 (333)
T ss_dssp EEEEEESSSSSHHHHH-HHHHHHHHHH-----CTTCEEEEEESSCCC
T ss_pred eEEEECCCCCCHHHHH-HHHHHHHHhc-----CCCceEEEEeccchh
Confidence 5789999999999754 4444444331 124567777654433
No 498
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=29.68 E-value=24 Score=33.54 Aligned_cols=17 Identities=41% Similarity=0.513 Sum_probs=14.9
Q ss_pred CCCcEEEEcCCCchHHH
Q 007402 62 EGKDVVARAKTGSGKTF 78 (605)
Q Consensus 62 ~gkdvlv~a~TGsGKT~ 78 (605)
.|.-+.+.+|.|||||.
T Consensus 30 ~Ge~~~iiG~nGsGKST 46 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKST 46 (235)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 46678899999999997
No 499
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=29.67 E-value=28 Score=39.34 Aligned_cols=27 Identities=26% Similarity=0.272 Sum_probs=0.0
Q ss_pred HHHHHHHhCC--CcEEEEcCCCchHHHHH
Q 007402 54 QASIPLILEG--KDVVARAKTGSGKTFAY 80 (605)
Q Consensus 54 ~~aIp~~l~g--kdvlv~a~TGsGKT~a~ 80 (605)
...+..+... .++|+.||+|+|||...
T Consensus 190 ~~l~~~l~~~~~~~vLL~G~pGtGKT~la 218 (758)
T 3pxi_A 190 QRVIEVLSRRTKNNPVLIGEPGVGKTAIA 218 (758)
T ss_dssp HHHHHHHHCSSSCEEEEESCTTTTTHHHH
T ss_pred HHHHHHHhCCCCCCeEEECCCCCCHHHHH
No 500
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=29.11 E-value=1.9e+02 Score=23.09 Aligned_cols=56 Identities=11% Similarity=0.132 Sum_probs=40.6
Q ss_pred CCeEEEEec------chhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHHcCCCcEEE
Q 007402 283 QKKALIFTN------TIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLI 338 (605)
Q Consensus 283 ~~k~IIFv~------s~~~~~~L~~~L~~~gi~~~~l~~~l~~~~R~~i~~~F~~g~~~iLI 338 (605)
..+++||.. +.-.|.++..+|...|+....++-......+..+.+......+.+|+
T Consensus 14 ~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~if 75 (109)
T 1wik_A 14 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSNWPTYPQLY 75 (109)
T ss_dssp TSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHHSCCSSCEEE
T ss_pred cCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHhCCCCCCEEE
Confidence 457888876 56689999999999999988888776666566555555444454544
Done!