Query 007404
Match_columns 605
No_of_seqs 440 out of 2413
Neff 5.7
Searched_HMMs 29240
Date Tue Mar 26 00:57:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007404.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007404hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l9z_H Sigma factor SIGA; heli 100.0 2E-54 6.7E-59 469.3 35.5 313 290-603 92-438 (438)
2 2a6h_F RNA polymerase sigma fa 100.0 1.4E-54 5E-59 469.9 27.1 313 290-603 77-423 (423)
3 3iyd_F RNA polymerase sigma fa 100.0 1.3E-42 4.6E-47 391.9 -2.7 248 356-603 362-612 (613)
4 3ugo_A RNA polymerase sigma fa 100.0 4.9E-36 1.7E-40 303.2 15.1 208 290-498 5-245 (245)
5 1rp3_A RNA polymerase sigma fa 100.0 4.6E-32 1.6E-36 265.6 18.2 222 364-595 11-237 (239)
6 1l0o_C Sigma factor; bergerat 100.0 7.5E-32 2.6E-36 263.8 4.5 217 362-590 25-243 (243)
7 2q1z_A RPOE, ECF SIGE; ECF sig 99.9 1.6E-23 5.4E-28 198.3 11.7 168 354-593 15-183 (184)
8 1or7_A Sigma-24, RNA polymeras 99.9 3.7E-23 1.3E-27 197.0 13.8 178 354-594 12-189 (194)
9 3mzy_A RNA polymerase sigma-H 99.9 1.1E-21 3.7E-26 180.8 13.5 154 389-596 1-159 (164)
10 2lfw_A PHYR sigma-like domain; 99.7 1.4E-18 4.7E-23 162.6 1.5 142 367-596 3-144 (157)
11 1sig_A Sigma70, RNA polymerase 99.6 2.2E-16 7.4E-21 165.8 10.4 83 357-439 254-339 (339)
12 3n0r_A Response regulator; sig 99.6 1.3E-15 4.3E-20 156.3 8.9 143 362-594 18-160 (286)
13 3t72_q RNA polymerase sigma fa 99.5 4E-14 1.4E-18 124.2 11.0 80 525-604 3-82 (99)
14 3hug_A RNA polymerase sigma fa 99.3 1.5E-11 5.3E-16 105.2 11.6 75 519-597 15-89 (92)
15 1tty_A Sigma-A, RNA polymerase 99.3 6.7E-12 2.3E-16 106.7 7.4 71 533-603 10-80 (87)
16 1ku3_A Sigma factor SIGA; heli 99.2 3.1E-12 1E-16 105.0 3.8 69 535-603 4-73 (73)
17 2p7v_B Sigma-70, RNA polymeras 99.2 8E-12 2.7E-16 101.0 4.0 66 538-603 2-67 (68)
18 2o7g_A Probable RNA polymerase 99.0 1.1E-09 3.7E-14 96.0 8.7 82 356-440 15-96 (112)
19 2o8x_A Probable RNA polymerase 99.0 8.2E-10 2.8E-14 88.6 7.2 64 531-598 5-68 (70)
20 1h3l_A RNA polymerase sigma fa 98.9 1.4E-09 4.7E-14 91.0 6.8 77 361-439 8-84 (87)
21 1xsv_A Hypothetical UPF0122 pr 98.8 1.2E-08 4E-13 91.1 9.5 69 526-598 9-78 (113)
22 3clo_A Transcriptional regulat 98.7 3.5E-11 1.2E-15 121.3 -12.1 147 363-594 95-245 (258)
23 1s7o_A Hypothetical UPF0122 pr 98.7 7.8E-08 2.7E-12 85.9 9.7 64 531-598 11-75 (113)
24 2rnj_A Response regulator prot 98.5 4.3E-08 1.5E-12 83.6 3.7 61 529-594 17-77 (91)
25 1x3u_A Transcriptional regulat 98.4 2.2E-07 7.6E-12 76.2 6.0 57 533-594 8-64 (79)
26 3c57_A Two component transcrip 98.4 2.6E-07 8.9E-12 79.6 6.5 59 531-594 17-75 (95)
27 1jhg_A Trp operon repressor; c 98.3 4.2E-07 1.4E-11 79.8 5.3 66 528-594 21-90 (101)
28 1je8_A Nitrate/nitrite respons 98.3 3.4E-07 1.2E-11 76.7 4.4 56 535-595 15-70 (82)
29 1fse_A GERE; helix-turn-helix 98.2 1.7E-06 5.7E-11 69.8 4.9 55 535-594 5-59 (74)
30 3ulq_B Transcriptional regulat 98.0 9.8E-06 3.3E-10 69.3 6.4 50 537-591 25-74 (90)
31 2jpc_A SSRB; DNA binding prote 97.9 1E-05 3.5E-10 63.0 4.6 45 544-593 1-45 (61)
32 1p4w_A RCSB; solution structur 97.8 2.8E-05 9.7E-10 67.7 6.4 47 540-591 33-79 (99)
33 2q0o_A Probable transcriptiona 97.4 0.00025 8.6E-09 69.9 7.0 46 541-591 175-220 (236)
34 1l3l_A Transcriptional activat 97.4 0.00025 8.4E-09 69.9 6.8 46 541-591 173-218 (234)
35 3szt_A QCSR, quorum-sensing co 97.1 0.00059 2E-08 67.6 6.3 47 540-591 174-220 (237)
36 3qp6_A CVIR transcriptional re 97.0 0.0008 2.7E-08 68.0 6.3 46 541-591 197-242 (265)
37 1tc3_C Protein (TC3 transposas 96.8 0.0017 5.8E-08 47.1 5.4 40 541-584 5-44 (51)
38 2w7n_A TRFB transcriptional re 96.2 0.0099 3.4E-07 52.0 7.1 46 541-590 18-63 (101)
39 1yio_A Response regulatory pro 96.0 0.014 4.8E-07 54.7 7.7 52 535-591 136-187 (208)
40 2x48_A CAG38821; archeal virus 95.9 0.0078 2.7E-07 45.6 4.3 38 543-585 18-55 (55)
41 1a04_A Nitrate/nitrite respons 95.6 0.02 6.7E-07 54.1 6.9 47 540-591 153-199 (215)
42 3c3w_A Two component transcrip 95.1 0.027 9.3E-07 54.0 6.3 47 540-591 148-194 (225)
43 3klo_A Transcriptional regulat 94.7 0.025 8.5E-07 54.1 4.8 48 539-591 157-204 (225)
44 1qbj_A Protein (double-strande 94.5 0.069 2.4E-06 44.7 6.4 43 545-591 11-53 (81)
45 3p7n_A Sensor histidine kinase 94.2 0.12 4E-06 49.9 8.3 56 531-591 188-243 (258)
46 1qgp_A Protein (double strande 94.1 0.07 2.4E-06 44.0 5.4 44 544-591 14-57 (77)
47 1p2f_A Response regulator; DRR 94.1 0.063 2.2E-06 50.8 5.9 50 541-591 145-197 (220)
48 2gwr_A DNA-binding response re 93.6 0.098 3.3E-06 50.3 6.3 50 541-591 153-207 (238)
49 2oqr_A Sensory transduction pr 93.4 0.089 3E-06 50.0 5.7 50 541-591 156-210 (230)
50 3iyd_F RNA polymerase sigma fa 93.0 0.023 7.8E-07 64.1 0.8 33 289-322 93-126 (613)
51 1kgs_A DRRD, DNA binding respo 92.5 0.13 4.5E-06 48.5 5.4 50 541-591 151-205 (225)
52 1jko_C HIN recombinase, DNA-in 92.3 0.13 4.5E-06 37.3 4.0 37 542-583 6-43 (52)
53 1ys7_A Transcriptional regulat 92.2 0.12 4.2E-06 49.0 4.8 50 541-591 159-213 (233)
54 2heo_A Z-DNA binding protein 1 92.1 0.22 7.5E-06 39.7 5.4 44 542-591 8-51 (67)
55 3ugo_A RNA polymerase sigma fa 91.4 0.036 1.2E-06 55.4 0.0 51 535-590 192-244 (245)
56 2hqr_A Putative transcriptiona 91.0 0.089 3E-06 49.8 2.3 50 541-591 143-197 (223)
57 2d1h_A ST1889, 109AA long hypo 90.9 0.58 2E-05 38.9 7.1 47 539-591 16-62 (109)
58 3q9s_A DNA-binding response re 90.6 0.19 6.6E-06 49.1 4.4 50 541-591 182-236 (249)
59 3r0a_A Putative transcriptiona 90.5 0.65 2.2E-05 41.0 7.4 49 537-591 19-68 (123)
60 3k2z_A LEXA repressor; winged 90.5 0.25 8.5E-06 47.2 5.0 41 541-581 2-44 (196)
61 3r0j_A Possible two component 90.5 0.39 1.3E-05 46.5 6.5 50 541-591 176-230 (250)
62 1u78_A TC3 transposase, transp 90.2 0.36 1.2E-05 42.5 5.4 40 541-584 6-45 (141)
63 1pdn_C Protein (PRD paired); p 89.8 0.53 1.8E-05 40.3 6.1 41 541-585 17-57 (128)
64 2dbb_A Putative HTH-type trans 88.5 0.79 2.7E-05 41.4 6.5 45 540-591 5-49 (151)
65 2cfx_A HTH-type transcriptiona 87.8 1 3.5E-05 40.6 6.8 44 541-591 2-45 (144)
66 1k78_A Paired box protein PAX5 87.6 0.86 2.9E-05 41.0 6.1 41 541-585 32-72 (149)
67 3i4p_A Transcriptional regulat 87.5 0.93 3.2E-05 41.8 6.4 36 542-580 1-36 (162)
68 1i1g_A Transcriptional regulat 87.4 0.99 3.4E-05 40.1 6.4 43 542-591 2-44 (141)
69 1zx4_A P1 PARB, plasmid partit 87.4 0.75 2.6E-05 44.5 5.8 35 547-586 15-49 (192)
70 2x4h_A Hypothetical protein SS 86.8 1.3 4.3E-05 39.1 6.7 48 540-591 9-57 (139)
71 1sfx_A Conserved hypothetical 86.7 1.3 4.4E-05 36.7 6.3 44 541-591 17-60 (109)
72 1oyi_A Double-stranded RNA-bin 86.7 0.49 1.7E-05 39.8 3.5 22 562-583 31-52 (82)
73 2elh_A CG11849-PA, LD40883P; s 86.6 1.4 4.7E-05 36.5 6.3 24 562-585 39-62 (87)
74 1y0u_A Arsenical resistance op 86.5 4 0.00014 33.9 9.3 46 537-591 23-69 (96)
75 2cg4_A Regulatory protein ASNC 86.2 1.5 5E-05 39.7 6.9 44 541-591 5-48 (152)
76 3cuo_A Uncharacterized HTH-typ 85.8 1.5 5E-05 36.2 6.2 50 535-591 14-64 (99)
77 1ku9_A Hypothetical protein MJ 85.7 2.5 8.4E-05 36.9 8.0 53 533-591 13-67 (152)
78 3kor_A Possible Trp repressor; 85.6 0.79 2.7E-05 41.1 4.5 35 540-580 60-94 (119)
79 1q1h_A TFE, transcription fact 85.6 1.1 3.8E-05 38.2 5.5 46 541-592 15-60 (110)
80 2glo_A Brinker CG9653-PA; prot 85.3 1.5 5.1E-05 33.5 5.5 29 564-593 28-56 (59)
81 2w25_A Probable transcriptiona 85.3 1.4 4.7E-05 39.8 6.2 44 541-591 4-47 (150)
82 2o3f_A Putative HTH-type trans 84.9 2 6.7E-05 37.6 6.8 52 532-583 9-61 (111)
83 2cyy_A Putative HTH-type trans 84.9 1.9 6.3E-05 39.0 6.9 44 541-591 4-47 (151)
84 2htj_A P fimbrial regulatory p 84.8 1.9 6.4E-05 35.0 6.3 27 561-591 14-40 (81)
85 2p5v_A Transcriptional regulat 84.8 1.4 4.9E-05 40.3 6.2 38 541-581 7-44 (162)
86 2pn6_A ST1022, 150AA long hypo 84.4 1.7 5.7E-05 39.1 6.3 43 542-591 1-43 (150)
87 3ech_A MEXR, multidrug resista 84.2 2.3 7.8E-05 37.3 7.1 50 531-583 20-73 (142)
88 2e1c_A Putative HTH-type trans 84.2 1.8 6.2E-05 40.4 6.7 44 541-591 24-67 (171)
89 2jn6_A Protein CGL2762, transp 84.1 1.6 5.6E-05 36.4 5.7 42 542-585 6-47 (97)
90 2w48_A Sorbitol operon regulat 83.9 1 3.4E-05 46.1 5.2 35 548-586 12-46 (315)
91 1r1u_A CZRA, repressor protein 83.9 4.2 0.00014 34.4 8.4 50 534-591 15-65 (106)
92 2fbh_A Transcriptional regulat 83.1 3.6 0.00012 35.8 7.8 55 531-591 22-78 (146)
93 3nqo_A MARR-family transcripti 82.7 3.7 0.00013 38.4 8.2 55 531-590 28-82 (189)
94 3sqn_A Conserved domain protei 82.7 1.5 5.2E-05 47.8 6.3 107 466-597 30-140 (485)
95 3ryp_A Catabolite gene activat 82.5 5.3 0.00018 36.7 9.2 49 540-592 136-194 (210)
96 3bpv_A Transcriptional regulat 82.2 4.7 0.00016 34.8 8.2 54 531-591 14-69 (138)
97 3fm5_A Transcriptional regulat 82.1 4.5 0.00015 35.7 8.2 51 530-582 23-75 (150)
98 3bdd_A Regulatory protein MARR 82.0 4.7 0.00016 34.8 8.2 44 541-591 28-71 (142)
99 2qvo_A Uncharacterized protein 81.9 1.5 5.1E-05 36.6 4.6 42 541-582 9-51 (95)
100 1jgs_A Multiple antibiotic res 81.8 5.1 0.00017 34.6 8.3 51 530-583 18-70 (138)
101 2k27_A Paired box protein PAX- 81.7 0.93 3.2E-05 41.3 3.5 40 541-584 25-64 (159)
102 2nnn_A Probable transcriptiona 81.7 3.5 0.00012 35.6 7.1 53 532-591 25-78 (140)
103 3jth_A Transcription activator 81.6 3 0.0001 34.6 6.4 50 534-591 12-62 (98)
104 3eco_A MEPR; mutlidrug efflux 81.6 5.4 0.00019 34.5 8.4 52 530-582 15-68 (139)
105 3bro_A Transcriptional regulat 81.6 6.1 0.00021 34.2 8.7 56 531-591 19-76 (141)
106 4hbl_A Transcriptional regulat 81.6 5.4 0.00018 35.3 8.5 48 533-583 28-77 (149)
107 2fa5_A Transcriptional regulat 81.4 5.8 0.0002 35.3 8.7 50 531-583 33-85 (162)
108 2ia0_A Putative HTH-type trans 81.4 2.3 7.9E-05 39.7 6.2 45 540-591 13-57 (171)
109 2fu4_A Ferric uptake regulatio 81.3 3.1 0.00011 33.5 6.3 46 541-591 14-64 (83)
110 2rdp_A Putative transcriptiona 81.1 5.3 0.00018 35.0 8.3 48 532-582 28-77 (150)
111 3iwf_A Transcription regulator 80.7 4.9 0.00017 34.9 7.6 63 532-594 5-72 (107)
112 2gxg_A 146AA long hypothetical 80.4 5.4 0.00019 34.7 8.0 51 533-591 24-76 (146)
113 3oop_A LIN2960 protein; protei 80.3 4.1 0.00014 35.6 7.2 49 531-582 22-72 (143)
114 2qww_A Transcriptional regulat 80.3 5.5 0.00019 35.2 8.1 46 534-582 29-76 (154)
115 3bj6_A Transcriptional regulat 79.7 5.7 0.0002 34.9 8.0 52 533-591 27-80 (152)
116 1s3j_A YUSO protein; structura 79.6 4.4 0.00015 35.7 7.2 52 533-591 24-77 (155)
117 2pex_A Transcriptional regulat 79.5 5 0.00017 35.5 7.5 50 531-583 32-83 (153)
118 3pqk_A Biofilm growth-associat 79.5 3.7 0.00013 34.4 6.3 50 534-591 12-62 (102)
119 2nyx_A Probable transcriptiona 79.4 5 0.00017 36.5 7.7 53 532-591 29-85 (168)
120 2l0k_A Stage III sporulation p 79.4 2.2 7.4E-05 36.5 4.7 37 544-584 7-43 (93)
121 3cjn_A Transcriptional regulat 79.3 4 0.00014 36.5 6.9 44 541-591 49-92 (162)
122 3cdh_A Transcriptional regulat 79.3 5.4 0.00018 35.3 7.7 49 531-582 28-78 (155)
123 2oz6_A Virulence factor regula 79.2 8.1 0.00028 35.4 9.2 27 561-591 164-190 (207)
124 3s2w_A Transcriptional regulat 79.1 4.3 0.00015 36.3 7.1 51 530-583 34-86 (159)
125 2jt1_A PEFI protein; solution 79.1 1.5 5.2E-05 36.1 3.6 23 559-581 22-44 (77)
126 2oqg_A Possible transcriptiona 79.0 5 0.00017 33.8 7.1 49 535-591 11-60 (114)
127 3tgn_A ADC operon repressor AD 79.0 3.1 0.00011 36.4 5.9 43 541-591 35-77 (146)
128 2lkp_A Transcriptional regulat 78.9 4.7 0.00016 34.6 7.0 49 535-591 22-71 (119)
129 2gau_A Transcriptional regulat 78.9 6.8 0.00023 36.8 8.7 49 539-591 148-206 (232)
130 2kko_A Possible transcriptiona 78.8 3.1 0.00011 35.6 5.7 49 535-591 15-64 (108)
131 1sfu_A 34L protein; protein/Z- 78.8 3.2 0.00011 34.2 5.4 29 559-591 27-55 (75)
132 3g3z_A NMB1585, transcriptiona 78.7 6.4 0.00022 34.4 8.0 53 532-591 17-71 (145)
133 3hsr_A HTH-type transcriptiona 78.6 4.3 0.00015 35.6 6.7 49 531-582 21-71 (140)
134 3boq_A Transcriptional regulat 78.3 3.2 0.00011 37.0 5.9 49 532-582 32-83 (160)
135 4b8x_A SCO5413, possible MARR- 78.3 4.9 0.00017 36.0 7.1 52 531-583 20-73 (147)
136 1lj9_A Transcriptional regulat 78.2 5 0.00017 34.9 7.1 54 531-591 14-69 (144)
137 3deu_A Transcriptional regulat 78.1 5.6 0.00019 36.2 7.6 55 531-591 38-94 (166)
138 3dv8_A Transcriptional regulat 77.4 5.1 0.00018 37.1 7.3 49 540-592 144-196 (220)
139 3k0l_A Repressor protein; heli 77.2 6 0.00021 35.5 7.4 50 531-583 31-82 (162)
140 4fx0_A Probable transcriptiona 77.2 6.9 0.00023 35.1 7.8 54 531-584 18-75 (148)
141 1xmk_A Double-stranded RNA-spe 77.1 1.9 6.6E-05 35.8 3.7 36 545-583 12-48 (79)
142 3b02_A Transcriptional regulat 77.1 8.3 0.00028 35.4 8.5 50 539-592 107-166 (195)
143 3nrv_A Putative transcriptiona 77.0 4.4 0.00015 35.6 6.3 40 541-583 37-76 (148)
144 2b0l_A GTP-sensing transcripti 76.7 1.7 5.9E-05 37.4 3.4 29 559-591 40-69 (102)
145 2p5k_A Arginine repressor; DNA 76.7 4.1 0.00014 30.9 5.3 24 560-583 18-46 (64)
146 1uxc_A FRUR (1-57), fructose r 76.6 2 6.9E-05 34.1 3.5 23 562-584 1-23 (65)
147 2zcw_A TTHA1359, transcription 76.5 11 0.00037 34.6 9.2 49 539-591 114-172 (202)
148 2y75_A HTH-type transcriptiona 76.4 3.7 0.00013 36.0 5.6 30 558-591 23-52 (129)
149 4ev0_A Transcription regulator 76.4 4.4 0.00015 37.5 6.5 29 560-592 162-190 (216)
150 1j1v_A Chromosomal replication 76.3 6.2 0.00021 33.5 6.8 42 545-594 34-76 (94)
151 1u78_A TC3 transposase, transp 76.1 21 0.00071 30.9 10.5 77 469-584 23-102 (141)
152 2zkz_A Transcriptional repress 75.8 3.2 0.00011 35.0 4.8 38 543-583 26-63 (99)
153 1zug_A Phage 434 CRO protein; 75.7 3.4 0.00011 31.6 4.6 23 562-584 17-39 (71)
154 1neq_A DNA-binding protein NER 75.5 2.1 7.1E-05 34.7 3.4 23 562-584 23-45 (74)
155 2a61_A Transcriptional regulat 75.5 4.6 0.00016 35.1 6.0 44 541-591 30-73 (145)
156 1r1t_A Transcriptional repress 75.3 7.3 0.00025 34.2 7.2 48 536-591 37-85 (122)
157 3kcc_A Catabolite gene activat 75.1 9.9 0.00034 36.8 8.9 27 561-591 217-243 (260)
158 1r69_A Repressor protein CI; g 75.1 3.6 0.00012 31.2 4.6 23 562-584 15-37 (69)
159 3qq6_A HTH-type transcriptiona 75.1 3.4 0.00012 33.0 4.6 23 562-584 24-46 (78)
160 1jhf_A LEXA repressor; LEXA SO 74.9 3.5 0.00012 38.9 5.4 43 540-584 2-49 (202)
161 4aik_A Transcriptional regulat 74.9 11 0.00037 33.9 8.5 50 531-582 16-67 (151)
162 3iwz_A CAP-like, catabolite ac 74.9 14 0.00048 34.4 9.6 49 539-591 155-213 (230)
163 3kz3_A Repressor protein CI; f 74.9 5.7 0.0002 31.5 5.9 23 562-584 26-48 (80)
164 3tqn_A Transcriptional regulat 74.7 2.4 8.1E-05 36.8 3.8 29 559-591 30-59 (113)
165 4ham_A LMO2241 protein; struct 74.6 2.3 7.9E-05 38.0 3.8 29 559-591 35-64 (134)
166 1ft9_A Carbon monoxide oxidati 74.6 2.5 8.6E-05 39.7 4.3 27 561-591 163-189 (222)
167 3f6w_A XRE-family like protein 74.3 3.2 0.00011 33.1 4.3 23 562-584 28-50 (83)
168 2xi8_A Putative transcription 74.3 3.4 0.00012 30.9 4.2 23 562-584 15-37 (66)
169 1on2_A Transcriptional regulat 74.1 3.3 0.00011 36.5 4.7 27 561-591 22-48 (142)
170 2wte_A CSA3; antiviral protein 74.1 6.6 0.00022 39.0 7.3 47 538-591 146-192 (244)
171 3e97_A Transcriptional regulat 74.1 2.6 9E-05 39.7 4.3 28 561-592 175-202 (231)
172 3frw_A Putative Trp repressor 74.0 10 0.00035 33.3 7.6 38 541-580 36-77 (107)
173 2fbi_A Probable transcriptiona 73.9 3.9 0.00013 35.4 5.1 44 541-591 33-76 (142)
174 3o9x_A Uncharacterized HTH-typ 73.9 8.9 0.0003 33.6 7.5 38 541-584 70-107 (133)
175 2r1j_L Repressor protein C2; p 73.9 3.6 0.00012 31.1 4.3 23 562-584 19-41 (68)
176 1p6r_A Penicillinase repressor 73.9 4.4 0.00015 32.6 5.0 45 540-591 5-53 (82)
177 2a6c_A Helix-turn-helix motif; 73.8 3.7 0.00013 33.1 4.6 23 562-584 32-54 (83)
178 3kp7_A Transcriptional regulat 73.8 6.7 0.00023 34.6 6.7 51 533-591 25-77 (151)
179 1uly_A Hypothetical protein PH 73.7 4.9 0.00017 38.3 6.1 42 542-591 18-59 (192)
180 2k9q_A Uncharacterized protein 73.3 3.6 0.00012 32.5 4.3 23 562-584 16-38 (77)
181 2fmy_A COOA, carbon monoxide o 73.2 2.9 9.8E-05 39.2 4.3 27 561-591 167-193 (220)
182 1y7y_A C.AHDI; helix-turn-heli 73.2 4.2 0.00015 31.2 4.6 23 562-584 27-49 (74)
183 1j5y_A Transcriptional regulat 73.2 4.5 0.00015 38.1 5.6 42 544-591 21-62 (187)
184 3e6m_A MARR family transcripti 73.1 7.3 0.00025 34.9 6.9 50 531-583 38-89 (161)
185 3bja_A Transcriptional regulat 73.0 4.6 0.00016 34.8 5.3 53 532-591 19-73 (139)
186 2b5a_A C.BCLI; helix-turn-heli 72.8 4.3 0.00015 31.5 4.6 23 562-584 24-46 (77)
187 3fmy_A HTH-type transcriptiona 72.8 2.9 9.8E-05 33.1 3.6 23 562-584 25-47 (73)
188 3b7h_A Prophage LP1 protein 11 72.8 4.9 0.00017 31.3 5.0 23 562-584 21-43 (78)
189 2wiu_B HTH-type transcriptiona 72.7 5.1 0.00017 32.1 5.2 23 562-584 26-48 (88)
190 3fx3_A Cyclic nucleotide-bindi 72.5 8.1 0.00028 36.4 7.4 49 540-592 150-205 (237)
191 3d0s_A Transcriptional regulat 72.4 3 0.0001 39.2 4.3 27 561-591 177-203 (227)
192 2eth_A Transcriptional regulat 72.3 4.7 0.00016 35.8 5.3 44 541-591 41-84 (154)
193 3la7_A Global nitrogen regulat 72.0 10 0.00035 36.2 8.1 27 561-591 193-219 (243)
194 3e6c_C CPRK, cyclic nucleotide 72.0 14 0.00047 35.3 9.0 28 561-592 177-204 (250)
195 3f3x_A Transcriptional regulat 72.0 12 0.00042 32.5 7.9 38 541-582 34-71 (144)
196 2ek5_A Predicted transcription 71.7 3.2 0.00011 37.1 4.0 29 559-591 25-54 (129)
197 2dk5_A DNA-directed RNA polyme 71.4 4.2 0.00014 34.4 4.5 46 540-590 16-61 (91)
198 1u2w_A CADC repressor, cadmium 71.4 4.2 0.00014 35.5 4.7 43 537-582 34-77 (122)
199 3eus_A DNA-binding protein; st 71.4 4.1 0.00014 33.2 4.3 23 562-584 28-50 (86)
200 1adr_A P22 C2 repressor; trans 71.3 4.3 0.00015 31.4 4.3 23 562-584 19-41 (76)
201 3dkw_A DNR protein; CRP-FNR, H 71.3 2.7 9.3E-05 39.3 3.6 29 560-592 177-205 (227)
202 3by6_A Predicted transcription 71.2 3.1 0.00011 36.9 3.8 29 559-591 32-61 (126)
203 3neu_A LIN1836 protein; struct 70.7 4.1 0.00014 36.0 4.5 28 560-591 35-63 (125)
204 3s8q_A R-M controller protein; 70.5 5.1 0.00017 31.8 4.6 23 562-584 25-47 (82)
205 2hr3_A Probable transcriptiona 70.3 4.4 0.00015 35.4 4.6 44 542-591 33-76 (147)
206 2o0m_A Transcriptional regulat 70.3 0.9 3.1E-05 47.2 0.0 40 542-584 18-57 (345)
207 4ghj_A Probable transcriptiona 70.2 4.7 0.00016 34.6 4.6 30 551-584 43-72 (101)
208 2ef8_A C.ECOT38IS, putative tr 69.9 5.3 0.00018 31.6 4.6 23 562-584 24-46 (84)
209 3t76_A VANU, transcriptional r 69.6 5.2 0.00018 33.4 4.6 23 562-584 38-60 (88)
210 2fbk_A Transcriptional regulat 69.6 5.6 0.00019 36.6 5.3 52 531-582 54-107 (181)
211 1zyb_A Transcription regulator 69.6 3.3 0.00011 39.3 3.9 27 561-591 186-212 (232)
212 2bv6_A MGRA, HTH-type transcri 69.5 5.7 0.00019 34.6 5.1 44 541-591 34-77 (142)
213 2ppx_A AGR_C_3184P, uncharacte 69.3 4.9 0.00017 33.5 4.5 23 562-584 44-66 (99)
214 3hyi_A Protein DUF199/WHIA; la 69.1 6.2 0.00021 40.5 5.9 42 539-583 241-282 (295)
215 1ub9_A Hypothetical protein PH 69.0 4.8 0.00016 32.9 4.3 42 543-591 15-56 (100)
216 1okr_A MECI, methicillin resis 68.9 4.1 0.00014 34.9 4.0 42 539-583 5-50 (123)
217 1x57_A Endothelial differentia 68.8 6.6 0.00023 31.9 5.1 23 562-584 27-49 (91)
218 2ewt_A BLDD, putative DNA-bind 68.5 6.6 0.00023 30.0 4.8 23 562-584 22-46 (71)
219 3u2r_A Regulatory protein MARR 68.4 6.9 0.00024 35.3 5.6 52 531-583 31-84 (168)
220 1hlv_A CENP-B, major centromer 68.3 9.9 0.00034 33.0 6.4 46 541-589 7-53 (131)
221 3bs3_A Putative DNA-binding pr 67.7 5.7 0.0002 30.7 4.3 23 562-584 24-46 (76)
222 2fxa_A Protease production reg 67.4 12 0.00042 35.5 7.4 44 541-591 45-88 (207)
223 3oio_A Transcriptional regulat 67.3 29 0.001 29.2 9.1 37 454-490 9-45 (113)
224 2g9w_A Conserved hypothetical 67.2 8.6 0.0003 34.1 5.9 43 539-583 4-50 (138)
225 2kpj_A SOS-response transcript 67.0 5.7 0.00019 32.7 4.3 23 562-584 23-45 (94)
226 3k2a_A Homeobox protein MEIS2; 67.0 17 0.0006 28.5 7.0 54 541-594 4-61 (67)
227 1xn7_A Hypothetical protein YH 66.9 10 0.00034 31.2 5.7 22 561-582 16-37 (78)
228 2k9s_A Arabinose operon regula 66.9 30 0.001 28.9 9.1 37 454-490 5-42 (107)
229 2frh_A SARA, staphylococcal ac 66.9 9.5 0.00032 33.1 6.0 54 533-591 24-79 (127)
230 3g5g_A Regulatory protein; tra 66.6 6.4 0.00022 33.2 4.6 23 562-584 42-64 (99)
231 3omt_A Uncharacterized protein 66.5 4.9 0.00017 31.2 3.7 23 562-584 22-44 (73)
232 3a03_A T-cell leukemia homeobo 66.3 13 0.00045 28.0 5.9 51 541-591 3-54 (56)
233 3f6o_A Probable transcriptiona 66.3 5.8 0.0002 34.3 4.4 49 535-591 8-57 (118)
234 1z91_A Organic hydroperoxide r 66.3 6.1 0.00021 34.5 4.6 50 535-591 29-80 (147)
235 3jw4_A Transcriptional regulat 66.2 6.5 0.00022 34.6 4.8 54 533-591 28-83 (148)
236 1tbx_A ORF F-93, hypothetical 65.9 4.9 0.00017 33.3 3.7 44 541-591 5-52 (99)
237 2ecc_A Homeobox and leucine zi 65.5 10 0.00035 31.2 5.5 52 541-592 9-61 (76)
238 3hrs_A Metalloregulator SCAR; 64.9 10 0.00036 36.4 6.4 30 558-591 17-46 (214)
239 2da1_A Alpha-fetoprotein enhan 64.9 17 0.00059 28.5 6.6 52 541-592 13-65 (70)
240 2pg4_A Uncharacterized protein 64.8 6 0.00021 32.6 4.1 22 561-582 30-52 (95)
241 3b73_A PHIH1 repressor-like pr 64.7 6.2 0.00021 34.6 4.3 38 542-582 11-50 (111)
242 1hw1_A FADR, fatty acid metabo 64.7 5.7 0.0002 38.2 4.5 29 559-591 28-57 (239)
243 2hwv_A DNA-binding response re 64.5 15 0.00052 32.0 6.9 49 541-590 43-96 (121)
244 2o38_A Hypothetical protein; a 64.4 7 0.00024 34.4 4.6 31 550-584 46-76 (120)
245 3c7j_A Transcriptional regulat 64.4 5.7 0.00019 38.8 4.4 30 558-591 46-75 (237)
246 3rkx_A Biotin-[acetyl-COA-carb 64.1 5.9 0.0002 40.9 4.7 40 544-584 3-42 (323)
247 3sxy_A Transcriptional regulat 64.1 5.1 0.00018 38.2 4.0 37 549-591 25-61 (218)
248 1v4r_A Transcriptional repress 63.7 1.6 5.3E-05 37.0 0.2 29 559-591 32-61 (102)
249 1b72_B Protein (PBX1); homeodo 63.3 25 0.00086 28.7 7.6 55 541-595 7-65 (87)
250 3t8r_A Staphylococcus aureus C 63.3 8.5 0.00029 34.8 5.1 30 558-591 25-54 (143)
251 1ais_B TFB TFIIB, protein (tra 63.2 97 0.0033 28.8 13.3 29 560-592 164-192 (200)
252 2k02_A Ferrous iron transport 63.2 7.9 0.00027 32.6 4.5 21 561-581 16-36 (87)
253 3vk0_A NHTF, transcriptional r 63.0 6.6 0.00023 33.6 4.1 23 562-584 35-57 (114)
254 2jt1_A PEFI protein; solution 62.8 9.9 0.00034 31.2 4.9 25 466-490 22-46 (77)
255 2h09_A Transcriptional regulat 62.6 6.4 0.00022 35.3 4.1 26 562-591 55-80 (155)
256 2bgc_A PRFA; bacterial infecti 62.6 4.4 0.00015 38.6 3.2 27 561-591 169-196 (238)
257 1ylf_A RRF2 family protein; st 62.4 10 0.00035 34.3 5.5 30 558-591 27-56 (149)
258 3lwf_A LIN1550 protein, putati 62.4 12 0.00042 34.6 6.1 47 541-591 21-70 (159)
259 2auw_A Hypothetical protein NE 62.4 7.4 0.00025 36.9 4.6 33 548-584 94-126 (170)
260 1bia_A BIRA bifunctional prote 62.4 9.3 0.00032 39.2 5.8 39 543-584 4-42 (321)
261 2wus_R RODZ, putative uncharac 62.3 8.2 0.00028 33.6 4.6 30 551-584 14-43 (112)
262 1z4h_A TORI, TOR inhibition pr 62.3 6.1 0.00021 30.9 3.4 25 561-585 10-34 (66)
263 3op9_A PLI0006 protein; struct 62.2 8.9 0.0003 32.5 4.8 23 562-584 23-45 (114)
264 1lmb_3 Protein (lambda repress 62.1 7.9 0.00027 31.3 4.3 23 562-584 31-53 (92)
265 2dmn_A Homeobox protein TGIF2L 62.1 20 0.00067 29.4 6.7 55 541-595 13-71 (83)
266 2k4j_A Putative transcriptiona 61.9 12 0.00041 32.5 5.6 50 541-591 41-95 (115)
267 3pvv_A Chromosomal replication 61.8 18 0.0006 31.2 6.6 42 545-594 38-79 (101)
268 1sd4_A Penicillinase repressor 61.6 10 0.00034 32.5 5.1 42 540-584 6-51 (126)
269 3mlf_A Transcriptional regulat 61.6 9.1 0.00031 32.9 4.8 23 562-584 37-59 (111)
270 2ict_A Antitoxin HIGA; helix-t 61.6 10 0.00034 31.0 4.8 23 562-584 22-44 (94)
271 2jsc_A Transcriptional regulat 61.5 8.1 0.00028 33.5 4.5 40 544-591 21-60 (118)
272 2l8n_A Transcriptional repress 61.5 3.4 0.00012 32.9 1.8 23 561-583 9-31 (67)
273 3trb_A Virulence-associated pr 61.4 8.2 0.00028 33.0 4.4 23 562-584 28-50 (104)
274 2rn7_A IS629 ORFA; helix, all 61.1 5.3 0.00018 33.8 3.1 24 562-585 31-54 (108)
275 2hin_A GP39, repressor protein 60.6 7.1 0.00024 31.6 3.6 22 563-584 12-33 (71)
276 3e7l_A Transcriptional regulat 60.4 10 0.00036 29.3 4.4 33 546-581 20-52 (63)
277 2l49_A C protein; P2 bacteriop 60.3 8.3 0.00028 31.6 4.1 23 562-584 18-40 (99)
278 3kxa_A NGO0477 protein, putati 60.3 8.4 0.00029 34.7 4.5 32 549-584 73-104 (141)
279 1fx7_A Iron-dependent represso 59.9 4.6 0.00016 39.2 2.8 45 541-591 3-50 (230)
280 3qwg_A ESX-1 secretion-associa 59.8 6.1 0.00021 35.1 3.4 35 548-583 12-51 (123)
281 1k61_A Mating-type protein alp 59.7 32 0.0011 26.0 7.2 51 541-591 4-58 (60)
282 1b0n_A Protein (SINR protein); 59.7 10 0.00034 31.7 4.6 23 562-584 15-37 (111)
283 1rzs_A Antirepressor, regulato 59.6 4 0.00014 31.5 1.9 21 562-582 11-31 (61)
284 2p8t_A Hypothetical protein PH 59.4 12 0.00041 36.3 5.6 45 541-591 12-56 (200)
285 1r71_A Transcriptional repress 59.4 12 0.00043 35.4 5.6 41 540-583 34-74 (178)
286 3dn7_A Cyclic nucleotide bindi 59.3 4.8 0.00016 36.7 2.7 43 540-582 147-189 (194)
287 1jgg_A Segmentation protein EV 59.1 19 0.00066 27.3 5.8 51 541-591 7-58 (60)
288 3rjp_A COVR; winged helix-turn 59.0 20 0.0007 29.4 6.4 50 541-591 22-76 (96)
289 1ig7_A Homeotic protein MSX-1; 58.7 18 0.00062 27.2 5.5 51 541-591 6-57 (58)
290 1yz8_P Pituitary homeobox 2; D 58.5 27 0.00091 27.2 6.6 53 541-593 9-62 (68)
291 2di3_A Bacterial regulatory pr 58.4 9.1 0.00031 37.0 4.7 37 549-591 17-54 (239)
292 2kfs_A Conserved hypothetical 58.2 5.6 0.00019 36.9 2.9 22 562-583 32-53 (148)
293 3ihu_A Transcriptional regulat 58.2 7.1 0.00024 37.4 3.8 37 549-591 29-65 (222)
294 2hdd_A Protein (engrailed home 58.1 19 0.00066 27.4 5.6 51 541-591 9-60 (61)
295 1o5l_A Transcriptional regulat 58.1 5.3 0.00018 37.4 2.8 27 561-591 164-190 (213)
296 2hs5_A Putative transcriptiona 58.0 7.1 0.00024 38.1 3.8 38 548-591 40-77 (239)
297 2lnb_A Z-DNA-binding protein 1 57.8 7.6 0.00026 32.2 3.3 32 557-592 30-61 (80)
298 3bd1_A CRO protein; transcript 57.8 8.5 0.00029 30.5 3.6 22 563-584 13-34 (79)
299 3ivp_A Putative transposon-rel 57.7 13 0.00045 32.1 5.2 23 562-584 26-48 (126)
300 2dmq_A LIM/homeobox protein LH 57.5 19 0.00066 29.0 5.8 53 542-594 14-67 (80)
301 1puf_B PRE-B-cell leukemia tra 57.5 37 0.0013 26.7 7.4 55 541-595 7-65 (73)
302 2vn2_A DNAD, chromosome replic 57.0 17 0.00057 32.1 5.8 43 541-583 29-73 (128)
303 2dmu_A Homeobox protein goosec 56.9 21 0.00071 28.0 5.8 51 542-592 14-65 (70)
304 1ahd_P Antennapedia protein mu 56.7 36 0.0012 26.6 7.1 53 541-593 8-61 (68)
305 2qq9_A Diphtheria toxin repres 56.7 8.1 0.00028 37.4 4.0 47 541-591 3-50 (226)
306 2xrn_A HTH-type transcriptiona 56.6 10 0.00034 37.1 4.7 41 547-591 7-47 (241)
307 1gxq_A PHOB, phosphate regulon 56.2 19 0.00064 30.4 5.8 50 541-591 31-85 (106)
308 3f52_A CLP gene regulator (CLG 55.9 9.7 0.00033 32.4 3.9 23 562-584 42-64 (117)
309 2cue_A Paired box protein PAX6 55.5 29 0.00099 28.0 6.6 55 541-595 13-68 (80)
310 1mkm_A ICLR transcriptional re 55.4 11 0.00037 36.9 4.7 26 558-583 20-45 (249)
311 3mkl_A HTH-type transcriptiona 55.3 60 0.002 27.6 9.0 35 456-490 11-45 (120)
312 3cec_A Putative antidote prote 55.3 12 0.0004 31.3 4.3 23 562-584 32-54 (104)
313 1opc_A OMPR, OMPRC; transcript 55.1 11 0.00038 32.0 4.2 49 541-590 31-84 (110)
314 2k40_A Homeobox expressed in E 55.0 23 0.0008 27.5 5.7 53 541-593 7-60 (67)
315 2wv0_A YVOA, HTH-type transcri 55.0 10 0.00036 37.1 4.5 29 559-591 31-60 (243)
316 1stz_A Heat-inducible transcri 54.9 10 0.00035 39.4 4.6 46 542-591 15-64 (338)
317 1rr7_A Middle operon regulator 54.9 14 0.0005 33.1 5.0 39 544-588 81-119 (129)
318 1l9z_H Sigma factor SIGA; heli 54.9 1E+02 0.0036 33.1 12.6 34 324-357 285-320 (438)
319 1g2h_A Transcriptional regulat 54.9 14 0.00048 28.4 4.3 18 563-580 35-52 (61)
320 2hzt_A Putative HTH-type trans 54.9 12 0.00042 31.6 4.4 49 535-591 4-54 (107)
321 2h1k_A IPF-1, pancreatic and d 54.8 26 0.0009 26.8 5.9 52 541-592 9-61 (63)
322 3rqi_A Response regulator prot 54.8 7.9 0.00027 35.2 3.4 39 541-582 139-177 (184)
323 2ao9_A Phage protein; structur 54.7 44 0.0015 31.0 8.4 44 540-583 22-70 (155)
324 3edp_A LIN2111 protein; APC883 54.5 9.3 0.00032 37.3 4.0 29 559-591 30-59 (236)
325 1bl0_A Protein (multiple antib 54.5 48 0.0016 28.7 8.3 37 454-490 13-49 (129)
326 2k9l_A RNA polymerase sigma fa 54.5 45 0.0016 26.9 7.5 57 528-591 15-74 (76)
327 1zq3_P PRD-4, homeotic bicoid 54.4 33 0.0011 26.8 6.5 54 541-594 8-62 (68)
328 2e1o_A Homeobox protein PRH; D 54.4 23 0.00078 27.8 5.6 53 541-593 13-66 (70)
329 3r1f_A ESX-1 secretion-associa 54.3 8.2 0.00028 34.7 3.3 38 545-583 11-53 (135)
330 2da4_A Hypothetical protein DK 54.1 16 0.00055 29.5 4.8 51 542-592 15-70 (80)
331 1x2n_A Homeobox protein pknox1 54.0 29 0.00099 27.4 6.2 54 541-594 13-70 (73)
332 3a02_A Homeobox protein arista 54.0 18 0.00062 27.5 4.8 52 541-592 5-57 (60)
333 2pmu_A Response regulator PHOP 53.9 19 0.00066 30.6 5.5 50 541-591 34-88 (110)
334 1nk2_P Homeobox protein VND; h 53.8 27 0.00093 28.0 6.1 54 542-595 16-70 (77)
335 3bwg_A Uncharacterized HTH-typ 53.5 10 0.00035 37.0 4.2 29 559-591 26-55 (239)
336 3fym_A Putative uncharacterize 53.1 14 0.00049 32.6 4.7 24 562-585 17-40 (130)
337 3nau_A Zinc fingers and homeob 53.0 24 0.00083 28.3 5.5 52 542-593 11-63 (66)
338 2g7u_A Transcriptional regulat 53.0 19 0.00064 35.4 6.0 31 552-582 20-50 (257)
339 1z7u_A Hypothetical protein EF 52.9 17 0.00059 31.0 5.0 49 535-591 12-62 (112)
340 3f8m_A GNTR-family protein tra 52.9 11 0.00036 37.2 4.2 30 558-591 32-62 (248)
341 3lfp_A CSP231I C protein; tran 52.7 15 0.00052 30.3 4.5 23 562-584 15-41 (98)
342 1fjl_A Paired protein; DNA-bin 52.6 31 0.0011 27.9 6.3 53 541-593 24-77 (81)
343 1j9i_A GPNU1 DBD;, terminase s 52.6 6.9 0.00024 30.6 2.2 24 562-585 3-26 (68)
344 3eet_A Putative GNTR-family tr 52.6 12 0.00041 37.5 4.5 29 559-591 50-79 (272)
345 1ntc_A Protein (nitrogen regul 52.5 9.8 0.00034 31.7 3.3 35 544-581 50-84 (91)
346 1b72_A Protein (homeobox prote 52.3 29 0.00098 29.2 6.3 54 541-594 40-94 (97)
347 1akh_A Protein (mating-type pr 52.2 19 0.00064 27.4 4.6 48 541-588 11-59 (61)
348 2jrt_A Uncharacterized protein 52.1 8 0.00027 33.0 2.7 37 546-585 37-73 (95)
349 2bnm_A Epoxidase; oxidoreducta 52.0 14 0.00047 34.3 4.6 23 562-584 24-46 (198)
350 2jvl_A TRMBF1; coactivator, he 51.9 11 0.00039 32.0 3.7 23 562-584 50-72 (107)
351 4a0z_A Transcription factor FA 51.7 22 0.00076 33.8 6.1 35 544-581 12-46 (190)
352 3zq7_A KDP operon transcriptio 51.7 26 0.00089 29.1 5.9 50 541-591 28-82 (102)
353 1y6u_A XIS, excisionase from t 51.6 8.8 0.0003 30.9 2.7 24 561-584 16-39 (70)
354 1gdt_A GD resolvase, protein ( 51.4 14 0.00047 34.4 4.5 22 562-583 159-180 (183)
355 2gqq_A Leucine-responsive regu 51.0 1.7 5.7E-05 40.0 -2.0 44 542-592 11-54 (163)
356 1rp3_A RNA polymerase sigma fa 50.8 1.5E+02 0.0052 27.3 14.6 34 325-358 101-134 (239)
357 3k69_A Putative transcription 50.8 12 0.00041 34.7 3.9 30 558-591 25-54 (162)
358 2r0q_C Putative transposon TN5 50.7 13 0.00044 35.4 4.2 32 547-583 166-197 (209)
359 1vz0_A PARB, chromosome partit 50.5 21 0.00072 34.9 5.8 41 540-583 116-156 (230)
360 2da3_A Alpha-fetoprotein enhan 50.4 16 0.00056 29.3 4.2 51 542-592 24-75 (80)
361 2o0y_A Transcriptional regulat 50.3 15 0.00051 36.2 4.8 24 559-582 36-59 (260)
362 1y9q_A Transcriptional regulat 50.2 15 0.00051 34.0 4.6 23 562-584 25-47 (192)
363 1hqc_A RUVB; extended AAA-ATPa 50.1 20 0.0007 35.4 5.8 43 541-583 244-286 (324)
364 2eby_A Putative HTH-type trans 49.9 12 0.00039 31.7 3.4 23 562-584 25-47 (113)
365 2pij_A Prophage PFL 6 CRO; tra 49.7 21 0.00073 27.0 4.6 20 563-582 15-34 (67)
366 1le8_B Mating-type protein alp 49.7 35 0.0012 27.8 6.2 57 542-598 9-69 (83)
367 1ftt_A TTF-1 HD, thyroid trans 49.7 32 0.0011 26.8 5.7 53 541-593 8-61 (68)
368 2cw1_A SN4M; lambda CRO fold, 49.3 9.6 0.00033 30.3 2.5 22 562-583 14-35 (65)
369 1umq_A Photosynthetic apparatu 49.2 15 0.00052 30.4 3.9 19 562-580 55-73 (81)
370 3rkq_A Homeobox protein NKX-2. 48.8 29 0.00098 25.8 5.2 49 541-589 8-57 (58)
371 1uhs_A HOP, homeodomain only p 48.5 51 0.0018 25.9 6.9 53 541-593 7-61 (72)
372 1puf_A HOX-1.7, homeobox prote 48.3 38 0.0013 27.1 6.1 53 542-594 20-73 (77)
373 1hkq_A REPA, replication prote 48.1 48 0.0016 29.4 7.3 57 535-591 12-77 (132)
374 2ia2_A Putative transcriptiona 48.0 17 0.00057 36.0 4.7 31 552-582 27-57 (265)
375 2dn0_A Zinc fingers and homeob 48.0 23 0.00078 28.3 4.7 52 541-592 14-66 (76)
376 2dms_A Homeobox protein OTX2; 47.9 24 0.00084 28.4 4.9 52 542-593 14-66 (80)
377 2dmt_A Homeobox protein BARH-l 47.8 23 0.00079 28.6 4.8 51 542-592 24-75 (80)
378 1ic8_A Hepatocyte nuclear fact 47.8 47 0.0016 31.9 7.6 22 562-583 44-65 (194)
379 2jzy_A Transcriptional regulat 47.8 18 0.0006 31.1 4.3 49 541-590 28-81 (112)
380 2vz4_A Tipal, HTH-type transcr 47.8 11 0.00037 32.3 2.9 25 562-586 2-26 (108)
381 3f6v_A Possible transcriptiona 47.2 15 0.00051 33.5 3.9 47 537-591 50-97 (151)
382 1iuf_A Centromere ABP1 protein 46.9 10 0.00034 34.3 2.7 43 541-585 11-60 (144)
383 3gbg_A TCP pilus virulence reg 46.5 1.3E+02 0.0044 28.9 10.9 31 460-490 177-207 (276)
384 2lk2_A Homeobox protein TGIF1; 46.2 41 0.0014 28.5 6.1 54 541-594 11-68 (89)
385 2k27_A Paired box protein PAX- 46.2 1.4E+02 0.0047 26.5 10.3 25 469-493 42-66 (159)
386 2da2_A Alpha-fetoprotein enhan 46.1 22 0.00074 27.9 4.2 51 542-592 14-65 (70)
387 3r4k_A Transcriptional regulat 46.1 14 0.00047 36.6 3.8 37 546-582 6-42 (260)
388 2hi3_A Homeodomain-only protei 45.8 58 0.002 25.7 6.8 53 541-593 8-62 (73)
389 4ich_A Transcriptional regulat 45.8 14 0.00048 36.7 3.8 22 561-582 140-161 (311)
390 1p4x_A Staphylococcal accessor 45.5 28 0.00096 34.4 5.9 45 541-590 155-199 (250)
391 1b8i_A Ultrabithorax, protein 45.4 36 0.0012 27.6 5.6 52 541-592 26-78 (81)
392 2dmp_A Zinc fingers and homeob 45.4 35 0.0012 28.3 5.6 52 541-592 19-71 (89)
393 2k9s_A Arabinose operon regula 45.3 49 0.0017 27.5 6.6 26 560-585 19-44 (107)
394 3mky_B Protein SOPB; partition 45.2 30 0.001 33.2 5.8 44 539-583 21-64 (189)
395 3mq0_A Transcriptional repress 44.8 12 0.00042 37.4 3.2 25 558-582 42-66 (275)
396 2p5t_A Putative transcriptiona 44.8 4.6 0.00016 36.8 0.0 23 562-584 15-37 (158)
397 1r8d_A Transcription activator 44.6 10 0.00035 32.5 2.2 25 562-586 3-27 (109)
398 2ofy_A Putative XRE-family tra 44.4 14 0.00048 29.4 2.9 23 562-584 28-50 (86)
399 3bdn_A Lambda repressor; repre 44.2 13 0.00043 35.6 3.0 23 562-584 31-53 (236)
400 2v79_A DNA replication protein 44.0 29 0.00099 31.2 5.3 46 541-586 29-76 (135)
401 2f2e_A PA1607; transcription f 44.0 28 0.00095 31.3 5.2 27 561-591 37-63 (146)
402 2k4b_A Transcriptional regulat 43.8 10 0.00034 32.4 2.0 47 538-591 29-79 (99)
403 3lsg_A Two-component response 43.6 60 0.0021 26.7 6.9 25 561-585 19-43 (103)
404 2obp_A Putative DNA-binding pr 43.3 55 0.0019 27.9 6.6 48 540-591 12-62 (96)
405 2jml_A DNA binding domain/tran 43.3 14 0.00049 29.8 2.8 23 562-584 6-28 (81)
406 3fm5_A Transcriptional regulat 43.2 90 0.0031 27.0 8.4 63 420-490 14-76 (150)
407 3u1d_A Uncharacterized protein 42.8 34 0.0012 31.6 5.6 50 537-591 21-72 (151)
408 3oou_A LIN2118 protein; protei 42.6 35 0.0012 28.5 5.3 25 561-585 21-45 (108)
409 2m0c_A Homeobox protein arista 42.5 33 0.0011 27.0 4.9 51 542-592 16-67 (75)
410 1mnm_C Protein (MAT alpha-2 tr 42.2 67 0.0023 26.2 6.8 50 541-590 33-86 (87)
411 2r5y_A Homeotic protein sex co 41.9 42 0.0015 27.5 5.6 51 541-591 34-85 (88)
412 2cra_A Homeobox protein HOX-B1 41.7 22 0.00074 28.0 3.6 50 542-591 14-64 (70)
413 1bw5_A ISL-1HD, insulin gene e 41.7 25 0.00087 27.2 3.9 51 541-591 9-60 (66)
414 3mn2_A Probable ARAC family tr 41.5 43 0.0015 27.9 5.7 37 454-490 4-40 (108)
415 1du6_A PBX1, homeobox protein 41.2 21 0.00073 27.4 3.4 50 541-590 9-62 (64)
416 2da5_A Zinc fingers and homeob 40.9 35 0.0012 27.3 4.8 51 542-592 14-65 (75)
417 2ly9_A Zinc fingers and homeob 40.9 22 0.00076 28.1 3.5 53 542-594 13-66 (74)
418 3mn2_A Probable ARAC family tr 40.8 35 0.0012 28.5 5.0 25 561-585 18-42 (108)
419 2vi6_A Homeobox protein nanog; 40.8 29 0.00099 26.5 4.1 51 541-591 9-60 (62)
420 2p4w_A Transcriptional regulat 40.5 26 0.00088 33.6 4.6 47 537-591 7-54 (202)
421 1eto_A FIS, factor for inversi 40.5 29 0.00099 29.6 4.4 32 546-580 59-90 (98)
422 2h8r_A Hepatocyte nuclear fact 40.0 40 0.0014 33.1 5.9 23 562-584 45-67 (221)
423 1yyv_A Putative transcriptiona 39.3 24 0.00081 31.3 3.9 27 561-591 48-75 (131)
424 2fbh_A Transcriptional regulat 39.3 1.7E+02 0.0057 24.8 9.4 25 466-490 50-74 (146)
425 3t72_q RNA polymerase sigma fa 39.2 1.3E+02 0.0043 25.5 8.3 24 467-490 38-61 (99)
426 3oou_A LIN2118 protein; protei 39.0 49 0.0017 27.5 5.7 72 380-481 12-83 (108)
427 2l7z_A Homeobox protein HOX-A1 38.8 34 0.0012 27.1 4.3 52 542-593 14-66 (73)
428 3oio_A Transcriptional regulat 38.6 50 0.0017 27.8 5.7 45 380-424 14-58 (113)
429 3k2z_A LEXA repressor; winged 38.4 40 0.0014 31.6 5.5 37 454-490 10-46 (196)
430 4bbr_M Transcription initiatio 38.3 60 0.0021 33.6 7.3 34 560-593 291-324 (345)
431 1x3u_A Transcriptional regulat 38.2 59 0.002 25.2 5.7 37 454-490 17-53 (79)
432 2djn_A Homeobox protein DLX-5; 38.2 23 0.00079 27.8 3.2 50 542-591 14-64 (70)
433 2fsw_A PG_0823 protein; alpha- 38.1 24 0.00083 29.7 3.6 47 537-591 17-65 (107)
434 3nrv_A Putative transcriptiona 37.6 70 0.0024 27.5 6.7 72 407-490 4-76 (148)
435 3knw_A Putative transcriptiona 37.4 2.1E+02 0.0072 25.3 10.2 76 337-412 31-108 (212)
436 3df8_A Possible HXLR family tr 37.4 36 0.0012 29.1 4.6 26 562-591 41-69 (111)
437 2kt0_A Nanog, homeobox protein 37.4 27 0.00092 28.3 3.6 50 542-591 29-79 (84)
438 2l1p_A DNA-binding protein SAT 37.3 27 0.00092 29.3 3.5 23 562-584 33-55 (83)
439 2z9m_A Response regulator YYCF 37.3 60 0.0021 27.9 6.1 49 541-590 36-89 (120)
440 3nar_A ZHX1, zinc fingers and 37.0 45 0.0015 27.9 5.1 52 541-592 31-83 (96)
441 3ic7_A Putative transcriptiona 36.8 2.9 0.0001 37.1 -2.6 29 559-591 32-61 (126)
442 2k9m_A RNA polymerase sigma fa 36.8 91 0.0031 27.8 7.3 48 540-591 15-65 (130)
443 3deu_A Transcriptional regulat 36.7 1.1E+02 0.0036 27.4 8.0 63 420-490 28-90 (166)
444 2yu3_A DNA-directed RNA polyme 36.7 45 0.0015 28.4 5.0 47 539-590 32-78 (95)
445 1hsj_A Fusion protein consisti 36.4 37 0.0013 35.9 5.5 56 531-591 389-446 (487)
446 1b0n_A Protein (SINR protein); 36.2 53 0.0018 27.0 5.4 23 469-491 15-37 (111)
447 3uj3_X DNA-invertase; helix-tu 35.6 7.8 0.00027 36.4 0.0 33 547-584 149-181 (193)
448 3plo_X DNA-invertase; resolvas 35.5 7.9 0.00027 36.5 0.0 33 548-585 150-182 (193)
449 2hqn_A Putative transcriptiona 35.3 15 0.0005 31.2 1.7 50 541-591 29-83 (109)
450 2fjr_A Repressor protein CI; g 35.3 28 0.00096 31.9 3.8 22 563-584 22-43 (189)
451 2ovg_A Phage lambda CRO; trans 35.2 30 0.001 27.3 3.4 21 562-582 14-34 (66)
452 2oa4_A SIR5; structure, struct 35.1 14 0.00047 32.1 1.5 34 549-586 42-75 (101)
453 1z6r_A MLC protein; transcript 34.9 47 0.0016 34.5 5.9 37 547-586 19-55 (406)
454 2qlz_A Transcription factor PF 34.9 59 0.002 31.9 6.2 22 561-582 178-199 (232)
455 3eco_A MEPR; mutlidrug efflux 34.8 86 0.0029 26.6 6.7 62 421-490 7-69 (139)
456 1bja_A Transcription regulator 34.7 57 0.002 27.8 5.3 45 540-591 12-57 (95)
457 3a01_A Homeodomain-containing 34.5 55 0.0019 27.3 5.2 53 542-594 24-77 (93)
458 3mkl_A HTH-type transcriptiona 33.9 53 0.0018 28.0 5.2 44 380-424 14-57 (120)
459 2fe3_A Peroxide operon regulat 33.8 1.2E+02 0.004 27.0 7.7 45 541-591 19-68 (145)
460 3lsg_A Two-component response 33.6 72 0.0025 26.2 5.8 33 458-490 8-41 (103)
461 3oop_A LIN2960 protein; protei 33.1 92 0.0032 26.6 6.7 61 421-490 13-73 (143)
462 2ra5_A Putative transcriptiona 33.0 9.1 0.00031 37.6 0.0 27 561-591 39-66 (247)
463 2xvc_A ESCRT-III, SSO0910; cel 32.1 78 0.0027 24.8 5.1 40 546-591 12-51 (59)
464 2fa5_A Transcriptional regulat 31.9 1.3E+02 0.0045 26.1 7.7 24 467-490 62-85 (162)
465 3d1n_I POU domain, class 6, tr 31.7 51 0.0017 29.9 4.9 50 542-591 100-150 (151)
466 2zhg_A Redox-sensitive transcr 31.7 22 0.00077 32.6 2.4 26 561-586 11-36 (154)
467 1d5y_A ROB transcription facto 31.3 78 0.0027 30.8 6.6 34 327-360 7-40 (292)
468 1z05_A Transcriptional regulat 31.3 55 0.0019 34.4 5.8 37 546-585 41-77 (429)
469 2l9r_A Homeobox protein NKX-3. 31.2 42 0.0014 26.7 3.7 50 542-591 11-61 (69)
470 4aik_A Transcriptional regulat 31.2 1.7E+02 0.0058 25.8 8.3 26 465-490 43-68 (151)
471 3hot_A Transposable element ma 30.8 47 0.0016 33.2 5.0 36 546-585 11-53 (345)
472 3bro_A Transcriptional regulat 30.7 1.1E+02 0.0037 25.9 6.7 23 468-490 50-72 (141)
473 1mzb_A Ferric uptake regulatio 30.7 1E+02 0.0036 27.0 6.7 47 541-592 15-66 (136)
474 1tc3_C Protein (TC3 transposas 30.6 81 0.0028 21.3 4.9 23 469-491 22-44 (51)
475 2ecb_A Zinc fingers and homeob 30.6 71 0.0024 26.8 5.2 53 541-593 17-70 (89)
476 2cuf_A FLJ21616 protein; homeo 30.5 78 0.0027 26.3 5.5 53 542-594 14-82 (95)
477 4dyq_A Gene 1 protein; GP1, oc 30.1 42 0.0014 30.0 3.9 39 542-584 13-52 (140)
478 3pfi_A Holliday junction ATP-d 30.0 57 0.0019 32.5 5.4 41 542-583 261-301 (338)
479 3gpv_A Transcriptional regulat 29.9 21 0.00071 32.5 1.9 25 562-586 17-41 (148)
480 2e19_A Transcription factor 8; 29.5 77 0.0026 24.6 4.9 43 544-586 12-55 (64)
481 3q9v_A DNA-binding response re 29.5 63 0.0022 28.6 5.0 50 541-591 60-114 (133)
482 2da7_A Zinc finger homeobox pr 29.0 74 0.0025 25.9 4.7 42 545-586 15-57 (71)
483 2ou3_A Tellurite resistance pr 29.0 3.2E+02 0.011 24.5 11.0 40 540-593 109-148 (161)
484 1e3o_C Octamer-binding transcr 28.8 62 0.0021 29.7 4.9 51 541-591 107-158 (160)
485 3e6m_A MARR family transcripti 28.3 1E+02 0.0036 27.0 6.3 23 468-490 67-89 (161)
486 3bqz_B HTH-type transcriptiona 27.9 49 0.0017 29.1 4.1 29 550-581 14-42 (194)
487 1u8b_A ADA polyprotein; protei 27.6 1.1E+02 0.0038 26.4 6.2 25 560-584 92-116 (133)
488 2zcm_A Biofilm operon icaabcd 27.5 48 0.0017 29.5 3.9 26 553-581 22-47 (192)
489 1xn7_A Hypothetical protein YH 27.2 71 0.0024 26.0 4.5 23 468-490 16-38 (78)
490 3ivp_A Putative transposon-rel 27.2 1.1E+02 0.0038 26.0 6.1 78 468-552 25-104 (126)
491 4a5n_A Uncharacterized HTH-typ 27.2 54 0.0018 29.3 4.1 44 535-581 16-60 (131)
492 1ku3_A Sigma factor SIGA; heli 27.1 86 0.003 24.2 4.9 24 467-490 29-52 (73)
493 3vpr_A Transcriptional regulat 27.0 56 0.0019 29.0 4.3 22 561-582 23-44 (190)
494 2a6h_F RNA polymerase sigma fa 27.0 4.2E+02 0.014 27.9 11.7 32 325-356 271-304 (423)
495 3f2g_A Alkylmercury lyase; MER 26.9 53 0.0018 32.2 4.3 35 454-490 24-58 (220)
496 2o03_A Probable zinc uptake re 26.9 67 0.0023 28.1 4.7 44 542-591 9-57 (131)
497 3cta_A Riboflavin kinase; stru 26.7 51 0.0018 31.5 4.2 23 560-582 26-48 (230)
498 1pdn_C Protein (PRD paired); p 26.5 50 0.0017 27.5 3.7 23 469-491 34-56 (128)
499 3knw_A Putative transcriptiona 26.5 57 0.002 29.2 4.3 21 561-581 34-54 (212)
500 2fq4_A Transcriptional regulat 26.5 57 0.002 29.2 4.3 27 553-582 27-53 (192)
No 1
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=100.00 E-value=2e-54 Score=469.31 Aligned_cols=313 Identities=38% Similarity=0.622 Sum_probs=281.7
Q ss_pred CCCHHH-HHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHhHH------------------HHHHhhcCCCCchHHHHHh--
Q 007404 290 YSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLR------------------EVLSERCGGSPTFAQWAAA-- 348 (605)
Q Consensus 290 ~~d~l~-yL~~i~~~~~lLT~eEE~eL~~~iq~~~~le~~~------------------~~L~~~~G~~pt~~ewA~a-- 348 (605)
..|+++ ||++| +++||||++||++|+++|+.++.++... .+.....|+.|+..+|+..
T Consensus 92 ~~d~~~~Yl~ei-~~~pLLt~eEE~~La~~i~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (438)
T 1l9z_H 92 TSDPVRQYLHEI-GQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGLKEKPDPKT 170 (438)
T ss_pred CCChHHHHHHHh-ccCCCCCHHHHHHHHHHHHHhhhHHHHHHhhhccchhhhhhhhhhhhhhcccccccccccccccchh
Confidence 468999 99999 9999999999999999999865433211 1112234677887777432
Q ss_pred ----------hcCCHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhccCCcCCCcc
Q 007404 349 ----------AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKF 418 (605)
Q Consensus 349 ----------~g~d~~~L~~~l~~g~~A~e~LI~~nlrLVvsIAkrY~~~g~d~eDLIQEG~IGLirA~ekFDp~kG~rF 418 (605)
.|++...|...+++|..|+++||.+|+++|++||++|.++|.+++|||||||||||+|+++|||.+|++|
T Consensus 171 ~~~~~~~~~~~~~~~~eLi~~~~~d~~A~~~Li~~nlrlVv~iA~ry~~~g~~aeDLIQEg~IgL~kAvekFDp~kG~rF 250 (438)
T 1l9z_H 171 VEEVDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKF 250 (438)
T ss_pred hhhhhhhhhcccchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcCcccCCCh
Confidence 3556677888888899999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHhcC--CCHHHHHHHHhCCCCCC
Q 007404 419 STYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATG--LSMKRLHAVLLSPKAPR 496 (605)
Q Consensus 419 STYA~~wIRqaI~r~ir~~sr~IRlP~~~~~~i~ki~ka~~~L~~elgr~PT~eEIAe~lg--is~e~V~~~l~~~~~~~ 496 (605)
+||++|||||.|.++|+++++++|+|.|+.+.+++++++.+.+.+.+||.|+.+|||+.+| +++++|..++.....++
T Consensus 251 sTYA~~wIR~~I~~~i~~~~R~irlp~~~~~~l~~lrr~~r~l~~~lgr~pt~eeiA~~l~~~v~~e~V~~~~~~~~~~~ 330 (438)
T 1l9z_H 251 STYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVEETLKIAQEPV 330 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhccchHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCHHHHHHHHHhccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999 99999999999888999
Q ss_pred CccccccccCCCCCCcccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHH
Q 007404 497 SLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRE 576 (605)
Q Consensus 497 SLD~~i~~d~~~~l~d~l~D~~~~spEe~l~~~el~~~L~~aL~~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISre 576 (605)
|||.+++++++..+.+.+++....+|++.+....+...|..+|+.||++||.||.+|||++|++++|++|||+.||||++
T Consensus 331 SLd~~~~~d~d~~l~d~l~d~~~~~pee~~~~~~~~~~L~~aL~~L~ereR~VI~LRygL~~~e~~TleEIAe~LgIS~e 410 (438)
T 1l9z_H 331 SLETPIGDEKDSFYGDFIPDENLPSPVEAAAQSLLSEELEKALSKLSEREAMVLKLRKGLIDGREHTLEEVGAYFGVTRE 410 (438)
T ss_pred ccccccccccchhhhhhhcccccCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCCHHHHHHHHCcCHH
Confidence 99999987766677787877666688988888889999999999999999999999999988888999999999999999
Q ss_pred HHHHHHHHHHHHHH-hHHhhhhHhhhhc
Q 007404 577 RIRQIESSAFRKLK-NKKRTKHLMQYAI 603 (605)
Q Consensus 577 rVRqie~RALkKLR-~~l~~~~L~~yl~ 603 (605)
||||+++||++||| +.+....|++|+.
T Consensus 411 rVRqi~~RAlkKLR~~~~~~~~l~~yl~ 438 (438)
T 1l9z_H 411 RIRQIENKALRKLKYHESRTRKLRDFLE 438 (438)
T ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHhhC
Confidence 99999999999999 8888899999974
No 2
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=100.00 E-value=1.4e-54 Score=469.90 Aligned_cols=313 Identities=39% Similarity=0.631 Sum_probs=274.0
Q ss_pred CCCHHH-HHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHhHHH------------------HHHhhcCCCCchHHHHH---
Q 007404 290 YSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE------------------VLSERCGGSPTFAQWAA--- 347 (605)
Q Consensus 290 ~~d~l~-yL~~i~~~~~lLT~eEE~eL~~~iq~~~~le~~~~------------------~L~~~~G~~pt~~ewA~--- 347 (605)
..|+++ ||++| +++|+||++||++|+++|+....+...-. ......|+.|+..+|+.
T Consensus 77 ~~d~~~~Yl~ei-~~~plLt~eEE~~La~ri~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (423)
T 2a6h_F 77 TSDPVRQYLHEI-GQVPLLTLEEEVELARKVEEGMEAIKKLSEITGLDPDLIREVVRAKILGSARVRHIPGLKETLDPKT 155 (423)
T ss_dssp THHHHHHHHHHH-HHCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHTTSCSSSCTTHH
T ss_pred CCcHHHHHHHHh-cccCCCCHHHHHHHHHHHHhchhHHHHHHHhhccchhhhhhhHhhhhhhhhhcccccchhhhhhhhh
Confidence 457999 99999 99999999999999999998643222111 00112245566554432
Q ss_pred ---------hhcCCHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhccCCcCCCcc
Q 007404 348 ---------AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKF 418 (605)
Q Consensus 348 ---------a~g~d~~~L~~~l~~g~~A~e~LI~~nlrLVvsIAkrY~~~g~d~eDLIQEG~IGLirA~ekFDp~kG~rF 418 (605)
+.+++...|...+++|..|+++||.+|+++|++||++|.++|.+++|||||||||||+|+++|||.+|++|
T Consensus 156 ~~~~~~~~~~~~~~~~~L~~~~~~d~~A~~~Li~~~lrlV~~iA~~y~~~~~~~eDLiQEg~igL~kav~kFd~~~g~~F 235 (423)
T 2a6h_F 156 VEEIDQKLKSLPKEHKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKF 235 (423)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHTTTCTTTSCHHHHHHHHHHHHHHHHHHCCTTSCCCH
T ss_pred hhhhhhhhhcccccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcCcccCCCH
Confidence 23566777888888889999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHhcC--CCHHHHHHHHhCCCCCC
Q 007404 419 STYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATG--LSMKRLHAVLLSPKAPR 496 (605)
Q Consensus 419 STYA~~wIRqaI~r~ir~~sr~IRlP~~~~~~i~ki~ka~~~L~~elgr~PT~eEIAe~lg--is~e~V~~~l~~~~~~~ 496 (605)
+||++||||+.|.+++++++|++|+|.|+.+.+++++++.+.+.+.+|+.|+.+|||+.+| +++++|..++.....++
T Consensus 236 stYa~~wIr~~i~~~i~~~~r~ir~p~~~~~~~~~lrr~~~~l~~~~~r~p~~~eiA~~l~~~~~~~~v~~~~~~~~~~~ 315 (423)
T 2a6h_F 236 STYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPTYEEIAEAMGPGWDAKRVEETLKIAQEPV 315 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHCTTCCHHHHHHHHHHHSCCE
T ss_pred HHHHHHHHHHHHHHHHHHccceeeccHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCHHHHHHHHHhccCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999 99999999998888899
Q ss_pred CccccccccCCCCCCcccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHH
Q 007404 497 SLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRE 576 (605)
Q Consensus 497 SLD~~i~~d~~~~l~d~l~D~~~~spEe~l~~~el~~~L~~aL~~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISre 576 (605)
|||.+++++++..+.+.+++....+|++.+....+...|..+|+.||++||.||.+|||++||+++|++|||+.||||++
T Consensus 316 Sld~~~~~~~~~~l~d~l~d~~~~~pe~~~~~~~~~~~L~~aL~~L~~rer~Vl~lr~~L~~~e~~Tl~EIA~~lgiS~e 395 (423)
T 2a6h_F 316 SLETPIGDEKDSFYGDFIPDEHLPSPVDAATQSLLSEELEKALSKLSEREAMVLKLRKGLIDGREHTLEEVGAFFGVTRE 395 (423)
T ss_dssp ESSCBCSSSSSCBGGGSSCCSSSCCHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHTTCC-----CHHHHSSSSCHH
T ss_pred ccccccCCCCccchhhhhccccCCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhccCCCCCCCHHHHHHHHCcCHH
Confidence 99999987777778888887766789998888889999999999999999999999999988889999999999999999
Q ss_pred HHHHHHHHHHHHHH-hHHhhhhHhhhhc
Q 007404 577 RIRQIESSAFRKLK-NKKRTKHLMQYAI 603 (605)
Q Consensus 577 rVRqie~RALkKLR-~~l~~~~L~~yl~ 603 (605)
||||++++|++||| +......|++|++
T Consensus 396 rVrqi~~rAl~kLR~~~~~~~~l~~~l~ 423 (423)
T 2a6h_F 396 RIRQIENKALRKLKYHESRTRKLRDFLD 423 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSSSCCC
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHhhC
Confidence 99999999999999 8888888999974
No 3
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=100.00 E-value=1.3e-42 Score=391.90 Aligned_cols=248 Identities=39% Similarity=0.645 Sum_probs=232.6
Q ss_pred HHHHHhccHHH---HHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhccCCcCCCcchhHHHHHHHHHHHH
Q 007404 356 LRRRLNYGILC---KDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK 432 (605)
Q Consensus 356 L~~~l~~g~~A---~e~LI~~nlrLVvsIAkrY~~~g~d~eDLIQEG~IGLirA~ekFDp~kG~rFSTYA~~wIRqaI~r 432 (605)
+.+...|+..| |+.||..|+++|+++|++|.+++.+++||+||||||||+++++||+.+|++|+||++|||||.|.+
T Consensus 362 i~~~~~Gd~~A~~A~~~L~~~y~~~v~~ia~r~~~~~~~aeDlvQE~fi~l~~a~~~fd~~~g~~Fstyl~~~irn~i~~ 441 (613)
T 3iyd_F 362 NRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITR 441 (613)
T ss_dssp HHTHHHHHHHHHHHHTTTTTTTTHHHHHGGGSSSTTSSCSTTTTHHHHHHHHHHTTSCCTTSSSCSTTTHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHcCccccCcHHHHHHHHHHHHHHH
Confidence 33444555666 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccccccccHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHhcCCCHHHHHHHHhCCCCCCCccccccccCCCCCCc
Q 007404 433 SLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSE 512 (605)
Q Consensus 433 ~ir~~sr~IRlP~~~~~~i~ki~ka~~~L~~elgr~PT~eEIAe~lgis~e~V~~~l~~~~~~~SLD~~i~~d~~~~l~d 512 (605)
+++++.+.+|+|.|+.+.+++++++.+.+.+++|+.||++|||+.+|+++++|..++.....++||+.+++++++..+.+
T Consensus 442 ~lr~~~r~~rip~~~~~~~~k~~r~~~~l~~~~gr~pt~eela~~l~~~~~~v~~~~~~~~~~~sld~~~~~~~~~~l~d 521 (613)
T 3iyd_F 442 SIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGD 521 (613)
T ss_dssp HTTTSCSSSCCCSHHHHTTTTTTTTTTTTTTTTCSCCCTTTTTTTSSCCSSHHHHHHHHSCCCCCSSCCCSSSSSCCGGG
T ss_pred HHHhcCcceeCcHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHhccCCcccCCCCCCCCCccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998877778888
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhH
Q 007404 513 VIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 592 (605)
Q Consensus 513 ~l~D~~~~spEe~l~~~el~~~L~~aL~~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 592 (605)
.+.+....+|++.+...++...|..+|..||+++|.||.|||++++++.+|++|||+.||||++||+++++||+++||+.
T Consensus 522 ~i~d~~~~~p~~~~~~~e~~~~l~~aL~~Lp~~er~Vl~Lr~~~~~~e~~s~~EIA~~lgis~~tVk~~~~rAl~kLR~~ 601 (613)
T 3iyd_F 522 FIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHP 601 (613)
T ss_dssp SCCCSSSCCHHHHHHHHTTSSSHHHHTTSSCHHHHHHHHHHHTSSSCCCCSTTGGGTTTSSCSSHHHHHHHHHHTTTTSC
T ss_pred HhcCCCCCCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCcCHHHHHHHhCCCHHHHHHHHHHHHHHhhCc
Confidence 88887777899999888888899999999999999999999997766779999999999999999999999999999999
Q ss_pred HhhhhHhhhhc
Q 007404 593 KRTKHLMQYAI 603 (605)
Q Consensus 593 l~~~~L~~yl~ 603 (605)
+....|+.|++
T Consensus 602 ~~~~~l~~~l~ 612 (613)
T 3iyd_F 602 SRSEVLRSFLD 612 (613)
T ss_dssp SSSCSSTTCC-
T ss_pred chhhHHHHHhc
Confidence 99999999986
No 4
>3ugo_A RNA polymerase sigma factor; protein-DNA complex, bacterial promoter opening, G-quartet, quadruplex, DNA binding; 2.10A {Thermus aquaticus} PDB: 3ugp_A 4gor_A 1ku2_A 3lev_A* 3les_A*
Probab=100.00 E-value=4.9e-36 Score=303.17 Aligned_cols=208 Identities=38% Similarity=0.647 Sum_probs=130.7
Q ss_pred CCCHHH-HHHHhhcCCCCCCHHHHHHHHHHHHHHHH-HHhHHHHHHh-------------------------hcCCCCch
Q 007404 290 YSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLK-LEGLREVLSE-------------------------RCGGSPTF 342 (605)
Q Consensus 290 ~~d~l~-yL~~i~~~~~lLT~eEE~eL~~~iq~~~~-le~~~~~L~~-------------------------~~G~~pt~ 342 (605)
..||++ ||++| +++||||++||++|+++|+.++. .+.+...... ..+.+|+.
T Consensus 5 ~~d~~~~yl~~i-~~~~llt~~~e~~la~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~g~~~~~~~~~ 83 (245)
T 3ugo_A 5 TSDPVRQYLHEI-GQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGLKEKPDPKT 83 (245)
T ss_dssp CCHHHHHHHHHH-TTSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHTTGGGCSCCCCTTCCCCCCHHH
T ss_pred CCCcHHHHHHHc-ccccCCCHHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHhhhhhhhccchhcccccccccccchh
Confidence 478999 99999 99999999999999999998654 3333221110 02467889
Q ss_pred HHHHHhhcCC----HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhccCCcCCCcc
Q 007404 343 AQWAAAAGVD----QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKF 418 (605)
Q Consensus 343 ~ewA~a~g~d----~~~L~~~l~~g~~A~e~LI~~nlrLVvsIAkrY~~~g~d~eDLIQEG~IGLirA~ekFDp~kG~rF 418 (605)
.+||.+.|++ ...|.+..++|..|++.||..|+++|+++|++|.+++.+++||+||||+|||+++++|||.+|++|
T Consensus 84 ~~~~~~~~~~~~~~~~~L~~~~~~d~~A~~~L~~~y~~lV~~ia~r~~~~~~~aeDLvQegfi~L~~a~~~fd~~~g~~F 163 (245)
T 3ugo_A 84 VEEVDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKF 163 (245)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHGGGTTSSSCHHHHHHHHHHHHHHHHHHCCGGGCCCH
T ss_pred HHHHHHhhccchHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcCcccCCcH
Confidence 9999998874 345666778899999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHhcC--CCHHHHHHHHhCCCCCC
Q 007404 419 STYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATG--LSMKRLHAVLLSPKAPR 496 (605)
Q Consensus 419 STYA~~wIRqaI~r~ir~~sr~IRlP~~~~~~i~ki~ka~~~L~~elgr~PT~eEIAe~lg--is~e~V~~~l~~~~~~~ 496 (605)
+||++||||++|.++++++.+.+++|.++.+.++++.++.+.+.+.+|+.||.+|||+.|| +|+++|...+..+...+
T Consensus 164 ~tya~~~ir~~i~~~ir~~~r~~r~p~~l~e~i~~l~~~~~~L~~~~~~~ps~~EIAe~Lg~~is~~tVk~~l~~ar~~l 243 (245)
T 3ugo_A 164 STYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVEETLKIAQEPV 243 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC-----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHCCCCCHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999 99999999998887777
Q ss_pred Cc
Q 007404 497 SL 498 (605)
Q Consensus 497 SL 498 (605)
||
T Consensus 244 sl 245 (245)
T 3ugo_A 244 SL 245 (245)
T ss_dssp --
T ss_pred CC
Confidence 75
No 5
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=99.98 E-value=4.6e-32 Score=265.63 Aligned_cols=222 Identities=23% Similarity=0.338 Sum_probs=192.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh---CCCCCHHHHHHHHHHHHHHhhhccCCcCCCcchhHHHHHHHHHHHHHHhhcccc
Q 007404 364 ILCKDKMITSNIRLVISIAKNYQ---GAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT 440 (605)
Q Consensus 364 ~~A~e~LI~~nlrLVvsIAkrY~---~~g~d~eDLIQEG~IGLirA~ekFDp~kG~rFSTYA~~wIRqaI~r~ir~~sr~ 440 (605)
..|++.||..|.++|+.+|++|. +++.+++||+|||+++||+++++||+.+|.+|.||+++||++.|.++++++.+
T Consensus 11 ~~a~~~l~~~~~~~v~~~a~~~~~~~~~~~~aeDl~Qe~~l~l~~~~~~~~~~~~~~f~~~l~~~~~~~~~d~~r~~~~- 89 (239)
T 1rp3_A 11 QIEREELILKYLPLVKAIATNIKKHLPEDVDIRDLISYGVIGLIKAVDNLSTENPKRAEAYIKLRIKGAIYDYLRSLDF- 89 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCHHHHHHHHHHHHHHHHHTCCCCCTHHHHHHHHHHHHHHHHHHHHTSST-
T ss_pred chHHHHHHHHhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHhcCc-
Confidence 45899999999999999999998 67899999999999999999999999999999999999999999999998764
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHhcCCCHHHHHHHHhCC--CCCCCccccccccCCCCCCcccCCCC
Q 007404 441 IRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSP--KAPRSLDQKIGINQNLKPSEVIADPE 518 (605)
Q Consensus 441 IRlP~~~~~~i~ki~ka~~~L~~elgr~PT~eEIAe~lgis~e~V~~~l~~~--~~~~SLD~~i~~d~~~~l~d~l~D~~ 518 (605)
.|.+......+++++...+...+|+.|+.+++++.+|++.+++..++... ....|+|.++.++++.. .+. +++
T Consensus 90 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~sl~~~~~~~~~~~-~~~-~~~- 164 (239)
T 1rp3_A 90 --GSRQVREKERRIKEVVEKLKEKLGREPTDEEVAKELGISTEELFKTLDKINFSYILSLEEVFRDFARDY-SEL-IPS- 164 (239)
T ss_dssp --TCHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-GGG-
T ss_pred --cchHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCcCHHHHHHHHHHhccCCCccccccccCCCccc-ccc-cCC-
Confidence 67777788899999999999999999999999999999999998876532 22346666543322222 333 332
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHhh
Q 007404 519 AETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRT 595 (605)
Q Consensus 519 ~~spEe~l~~~el~~~L~~aL~~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~ 595 (605)
..+|++.+...+....|..+|..||+++|.||.++|+.+ +|++|||+.||||.++|+++++||+++||+.+..
T Consensus 165 ~~~~~~~~~~~e~~~~l~~~l~~L~~~~r~vl~l~~~~g----~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~l~~ 237 (239)
T 1rp3_A 165 STNVEEEVIKRELTEKVKEAVSKLPEREKLVIQLIFYEE----LPAKEVAKILETSVSRVSQLKAKALERLREMLSN 237 (239)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTSC----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC----CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 346888888888889999999999999999999999887 9999999999999999999999999999998753
No 6
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=99.97 E-value=7.5e-32 Score=263.84 Aligned_cols=217 Identities=28% Similarity=0.449 Sum_probs=52.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhccCCcCCCcchhHHHHHHHHHHHHHHhhccccc
Q 007404 362 YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTI 441 (605)
Q Consensus 362 ~g~~A~e~LI~~nlrLVvsIAkrY~~~g~d~eDLIQEG~IGLirA~ekFDp~kG~rFSTYA~~wIRqaI~r~ir~~sr~I 441 (605)
|+..|++.|+..|.++|+++|++|.++..+++||+||||++||+++++||+.+|.+|.||+++|+++.+.++++++. .+
T Consensus 25 gd~~a~~~l~~~~~~~v~~~~~~~~~~~~~aeDl~Qe~~l~l~~~~~~~~~~~~~~f~~~l~~i~~~~~~d~~r~~~-~~ 103 (243)
T 1l0o_C 25 GDQEARDEIIEKNMRLVWSVVQRFLNRGYEADDLFQIGCIGLLKSVDKFDLSYDVKFSTYAVPMIIGEIQRFLRDDG-TV 103 (243)
T ss_dssp ---------------------------------------------------------------------------CC-CC
T ss_pred CCHHHHHHHHHHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHhcC-Cc
Confidence 45789999999999999999999999999999999999999999999999999889999999999999999999987 78
Q ss_pred cccccHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHhcCCCHHHHHHHHhCCCCCCCccccccccCC--CCCCcccCCCCC
Q 007404 442 RLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN--LKPSEVIADPEA 519 (605)
Q Consensus 442 RlP~~~~~~i~ki~ka~~~L~~elgr~PT~eEIAe~lgis~e~V~~~l~~~~~~~SLD~~i~~d~~--~~l~d~l~D~~~ 519 (605)
++|.++.....+++++...+.+..++.|+.++++..+|++.+.+...+.......|++.++.++++ .++.+.++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~---- 179 (243)
T 1l0o_C 104 KVSRSLKEMGNKIRKAKDELSKTRGRAPTVTEIADHLGISPEDVVLAQEAVRLPTSIHETVYENDGDPITLLDQIA---- 179 (243)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHTSCCBHHHHHHHHTSCHHHHHHHHHHHHC---------------------------
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHhccccCccccccccCCcccchhhccC----
Confidence 999999999999999999999999999999999999999999998887655557788777543322 22233222
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 007404 520 ETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 590 (605)
Q Consensus 520 ~spEe~l~~~el~~~L~~aL~~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR 590 (605)
++.+...+....|..+|..||+++|.||.|+|+.+ +|++|||+.||||.++|+++++||+++||
T Consensus 180 ---~~~~~~~~~~~~l~~~l~~L~~~~r~vl~l~~~~g----~s~~EIA~~lgis~~tV~~~~~ra~~~Lr 243 (243)
T 1l0o_C 180 ---DADEASWFDKIALKKAIEELDERERLIVYLRYYKD----QTQSEVASRLGISQVQMSRLEKKILQHIK 243 (243)
T ss_dssp -----------------------------------------------------------------------
T ss_pred ---cchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcC----CCHHHHHHHHCcCHHHHHHHHHHHHHHcC
Confidence 22334445667789999999999999999999887 99999999999999999999999999997
No 7
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=99.89 E-value=1.6e-23 Score=198.29 Aligned_cols=168 Identities=14% Similarity=0.108 Sum_probs=142.5
Q ss_pred HHHHH-HHhccHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhccCCcCCCcchhHHHHHHHHHHHH
Q 007404 354 RELRR-RLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK 432 (605)
Q Consensus 354 ~~L~~-~l~~g~~A~e~LI~~nlrLVvsIAkrY~~~g~d~eDLIQEG~IGLirA~ekFDp~kG~rFSTYA~~wIRqaI~r 432 (605)
+.+.+ ...|+..|++.|+..|.+.|+.++++|.++..+++|++||+|+.+|+++++|++..| .|.+|++.++++.+.+
T Consensus 15 ~li~~~~~~gd~~a~~~l~~~~~~~l~~~~~~~~~~~~~aeD~~Qe~~l~~~~~~~~~~~~~~-~~~~wl~~i~~n~~~d 93 (184)
T 2q1z_A 15 ALMRAIRDHRDEAAFAELFQHFAPKVKGFLMKSGSVASQAEECAQDVMATVWQKAHLFDPSRA-SVATWIFTIARNRRID 93 (184)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSGGGCCTTTC-CHHHHHHHHHHTSCCT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHhhhhcCcccC-cHHHHHHHHHHHHHHH
Confidence 34444 456779999999999999999999999999899999999999999999999999876 7999999999999999
Q ss_pred HHhhccccccccccHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHhcCCCHHHHHHHHhCCCCCCCccccccccCCCCCCc
Q 007404 433 SLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSE 512 (605)
Q Consensus 433 ~ir~~sr~IRlP~~~~~~i~ki~ka~~~L~~elgr~PT~eEIAe~lgis~e~V~~~l~~~~~~~SLD~~i~~d~~~~l~d 512 (605)
+++++.+...+ +. ..
T Consensus 94 ~~R~~~~~~~~-------------------------------------------------------~~------~~---- 108 (184)
T 2q1z_A 94 GLRKDRQPEPE-------------------------------------------------------DL------FW---- 108 (184)
T ss_dssp TTCSSSCCCCC-------------------------------------------------------CC------CC----
T ss_pred HHHhhcccccc-------------------------------------------------------cc------cc----
Confidence 98876542111 00 00
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhH
Q 007404 513 VIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 592 (605)
Q Consensus 513 ~l~D~~~~spEe~l~~~el~~~L~~aL~~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 592 (605)
..+ ...+|++.+...+....|..+|..||+++|+||.|+|..+ +|++|||+.||||..+|+++++||+++||+.
T Consensus 109 -~~~-~~~~~~~~~~~~~~~~~l~~~l~~L~~~~r~vl~l~~~~g----~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 182 (184)
T 2q1z_A 109 -GPD-SEPDQADVYEMQQENARLGRAIARLPEAQRALIERAFFGD----LTHRELAAETGLPLGTIKSRIRLALDRLRQH 182 (184)
T ss_dssp -CSS-CCCCHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSC----CSSCCSTTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred -cCC-CCCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 011 1236777777778888899999999999999999999988 9999999999999999999999999999986
Q ss_pred H
Q 007404 593 K 593 (605)
Q Consensus 593 l 593 (605)
+
T Consensus 183 l 183 (184)
T 2q1z_A 183 M 183 (184)
T ss_dssp C
T ss_pred h
Confidence 4
No 8
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=99.89 E-value=3.7e-23 Score=197.01 Aligned_cols=178 Identities=16% Similarity=0.190 Sum_probs=136.1
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhccCCcCCCcchhHHHHHHHHHHHHH
Q 007404 354 RELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKS 433 (605)
Q Consensus 354 ~~L~~~l~~g~~A~e~LI~~nlrLVvsIAkrY~~~g~d~eDLIQEG~IGLirA~ekFDp~kG~rFSTYA~~wIRqaI~r~ 433 (605)
+.+.+...|+..|++.|+..|.+.|+.+|++|.+ ..+++|++||+|+++|+++++|++.. .|.+|++.+++|.+.++
T Consensus 12 ~l~~~~~~gd~~a~~~l~~~~~~~l~~~~~~~~~-~~~aeDl~Qe~~l~~~~~~~~~~~~~--~~~~~l~~i~~n~~~d~ 88 (194)
T 1or7_A 12 VLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVP-SGDVPDVVQEAFIKAYRALDSFRGDS--AFYTWLYRIAVNTAKNY 88 (194)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTSC-GGGHHHHHHHHHHHHHHHGGGCCSSS--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHcC-HHhHHHHHHHHHHHHHHhHHhcCCcc--chHHHHHHHHHHHHHHH
Confidence 3444555667999999999999999999999999 99999999999999999999999875 59999999999999999
Q ss_pred HhhccccccccccHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHhcCCCHHHHHHHHhCCCCCCCccccccccCCCCCCcc
Q 007404 434 LSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEV 513 (605)
Q Consensus 434 ir~~sr~IRlP~~~~~~i~ki~ka~~~L~~elgr~PT~eEIAe~lgis~e~V~~~l~~~~~~~SLD~~i~~d~~~~l~d~ 513 (605)
++++.+..+.. ++.. .. . ..++. .+.
T Consensus 89 ~R~~~~~~~~~----------------------------~~~~--------~~-~-------~~~~~----------~~~ 114 (194)
T 1or7_A 89 LVAQGRRPPSS----------------------------DVDA--------IE-A-------ENFES----------GGA 114 (194)
T ss_dssp HHHHTTCCTHH----------------------------HHHH--------HH-H-------HSCCS----------SCC
T ss_pred HHHHhccCccc----------------------------cccc--------cc-c-------ccccc----------ccc
Confidence 99876532110 0000 00 0 00000 001
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHH
Q 007404 514 IADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 593 (605)
Q Consensus 514 l~D~~~~spEe~l~~~el~~~L~~aL~~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l 593 (605)
+.+. .+|++.+...+....|..+|..||+++|+||.|+|+.+ +|++|||+.||||..+|+++++||+++||+.+
T Consensus 115 ~~~~--~~~~~~~~~~e~~~~l~~~l~~L~~~~r~vl~l~~~~g----~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l 188 (194)
T 1or7_A 115 LKEI--SNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDG----LSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 188 (194)
T ss_dssp ----------CEEEHHHHHHHHHHHHHHSCHHHHHHHHHHHTTC----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCC--CChHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHcC----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 1111 13443344445667789999999999999999999887 99999999999999999999999999999976
Q ss_pred h
Q 007404 594 R 594 (605)
Q Consensus 594 ~ 594 (605)
.
T Consensus 189 ~ 189 (194)
T 1or7_A 189 Q 189 (194)
T ss_dssp C
T ss_pred H
Confidence 4
No 9
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=99.86 E-value=1.1e-21 Score=180.79 Aligned_cols=154 Identities=16% Similarity=0.247 Sum_probs=107.8
Q ss_pred CCCHHHHHHHHHHHHHHhhhccCCcCCCcchhHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHcCCC
Q 007404 389 GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRH 468 (605)
Q Consensus 389 g~d~eDLIQEG~IGLirA~ekFDp~kG~rFSTYA~~wIRqaI~r~ir~~sr~IRlP~~~~~~i~ki~ka~~~L~~elgr~ 468 (605)
|.+++|++||+|++||+++.+||+.+ .+|.||+++++++.+.++++++.+..+.|..
T Consensus 1 g~daeDl~Qe~~~~l~~~~~~~~~~~-~~f~~~l~~i~~n~~~d~~r~~~~~~~~~~~---------------------- 57 (164)
T 3mzy_A 1 GAEKEDLVQEGILGLLKAIKFYDETK-SSFSSFAFLCIRREMISAIRKANTQKHMVLN---------------------- 57 (164)
T ss_dssp ----CTTHHHHHHHHHHHHHHCCTTT-SCHHHHHHHHHHHHHHHHHHHHHHCC---------------------------
T ss_pred CCcHHHHHHHHHHHHHHHHHHhCccC-CChHHHhHHHHHHHHHHHHHHhhcccchhhH----------------------
Confidence 57899999999999999999999987 6899999999999999999987643322211
Q ss_pred CCHHHHHHhcCCCHHHHHHHHhCCCCCCCccccccccCCCCCC----cccCCCCCCCHHHHHHHHHHHHHHHHHHh-cCC
Q 007404 469 PNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPS----EVIADPEAETAEDLLIKKFMKEDLEKVLD-TLN 543 (605)
Q Consensus 469 PT~eEIAe~lgis~e~V~~~l~~~~~~~SLD~~i~~d~~~~l~----d~l~D~~~~spEe~l~~~el~~~L~~aL~-~L~ 543 (605)
..++++.+..++....+. +.+.+ ...+|++.+...+....|..+|. .||
T Consensus 58 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~~~l~~~l~~~L~ 111 (164)
T 3mzy_A 58 -------------------------EALKTNAILEDSAYFDDEGHNINNYKS-SESNPEEAYLLKEEIEEFKKFSENNFS 111 (164)
T ss_dssp ----------------------------------------------------------CHHHHHHHHHHHHHHHHHHHSC
T ss_pred -------------------------HHhhhhhhhccCCCCCcccchhhhhcc-cCCCHHHHHHHHHHHHHHHHHHHhhCC
Confidence 011121111111111111 11222 22367777888888889999999 999
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHhhh
Q 007404 544 PRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTK 596 (605)
Q Consensus 544 ~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~~ 596 (605)
+++|.||. +|..| +|++|||+.||||.++|+++++||+++||+.+...
T Consensus 112 ~~~r~v~~-~~~~g----~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l~~~ 159 (164)
T 3mzy_A 112 KFEKEVLT-YLIRG----YSYREIATILSKNLKSIDNTIQRIRKKSEEWIKEE 159 (164)
T ss_dssp HHHHHHHH-HHTTT----CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHcC----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999 77776 99999999999999999999999999999988754
No 10
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=99.70 E-value=1.4e-18 Score=162.63 Aligned_cols=142 Identities=9% Similarity=0.106 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhccCCcCCCcchhHHHHHHHHHHHHHHhhcccccccccc
Q 007404 367 KDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFH 446 (605)
Q Consensus 367 ~e~LI~~nlrLVvsIAkrY~~~g~d~eDLIQEG~IGLirA~ekFDp~kG~rFSTYA~~wIRqaI~r~ir~~sr~IRlP~~ 446 (605)
|+.|+..|.+.|+.+|+++.++..+++|++||+|+.+|+++++|++.. .|.+|++..++|.+.+++++...
T Consensus 3 f~~l~~~~~~~l~~~~~~~~~~~~~AeDlvQe~fl~~~~~~~~~~~~~--~~~~wl~~ia~n~~~d~~R~~~~------- 73 (157)
T 2lfw_A 3 LGQQLAPHLPFLRRYGRALTGSQNQGDKYVRATLEAIVAAPDQFPRDV--DPRLGLYRMFQGIWASANADGEA------- 73 (157)
T ss_dssp GGGGTGGGGGGGTTTGGGTTSCHHHHHHHHHHHHHTTTTCGGGCCCSS--CTTHHHHHHHHHHHHHHTTTTSC-------
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhHHHcCCCC--cHHHHHHHHHHHHHHHHhhccCc-------
Confidence 567899999999999999999999999999999999999999999763 69999999999999998875310
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHhcCCCHHHHHHHHhCCCCCCCccccccccCCCCCCcccCCCCCCCHHHHH
Q 007404 447 MVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLL 526 (605)
Q Consensus 447 ~~~~i~ki~ka~~~L~~elgr~PT~eEIAe~lgis~e~V~~~l~~~~~~~SLD~~i~~d~~~~l~d~l~D~~~~spEe~l 526 (605)
+ +. . . + ..
T Consensus 74 ----------------------~-----------------------------~~------~--~-e---~~--------- 81 (157)
T 2lfw_A 74 ----------------------Q-----------------------------TS------Q--S-D---AE--------- 81 (157)
T ss_dssp ----------------------C-----------------------------CC------C--C-S---CS---------
T ss_pred ----------------------c-----------------------------cC------C--c-c---hH---------
Confidence 0 00 0 0 0 00
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHhhh
Q 007404 527 IKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTK 596 (605)
Q Consensus 527 ~~~el~~~L~~aL~~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~~ 596 (605)
+....|..+|..||+++|+||.|+|..| +|++|||+.||||..+|++++.||+++||+.+...
T Consensus 82 ---~~~~~l~~~l~~Lp~~~r~vl~L~~~~g----~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l~~~ 144 (157)
T 2lfw_A 82 ---GTEAVARARLARMTPLSRQALLLTAMEG----FSPEDAAYLIEVDTSEVETLVTEALAEIEKQTRAL 144 (157)
T ss_dssp ---SSSSTTTTTTTTSCTTHHHHHTTTSSSC----CCHHHHHHTTTSCHHHHHHHHHHHHHHHHTTSSCC
T ss_pred ---HHHHHHHHHHHhCCHHHHHHHHHHHHcC----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHhc
Confidence 0112366788999999999999999887 99999999999999999999999999999977543
No 11
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma factor, transcription regulation; 2.60A {Escherichia coli} SCOP: a.177.1.1
Probab=99.65 E-value=2.2e-16 Score=165.81 Aligned_cols=83 Identities=48% Similarity=0.866 Sum_probs=75.7
Q ss_pred HHHHhccH---HHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhccCCcCCCcchhHHHHHHHHHHHHH
Q 007404 357 RRRLNYGI---LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKS 433 (605)
Q Consensus 357 ~~~l~~g~---~A~e~LI~~nlrLVvsIAkrY~~~g~d~eDLIQEG~IGLirA~ekFDp~kG~rFSTYA~~wIRqaI~r~ 433 (605)
.+...|+. .|++.||..|+++|+++|++|.+++.+++||+||||||||+++++|++.+|++|+||++|||||.|.++
T Consensus 254 ~~~~~gd~~~~~A~~~L~~~~~~~v~~~a~~~~~~~~~aeDlvQe~~i~l~~a~~~f~~~~g~~f~twl~~iirn~~~~~ 333 (339)
T 1sig_A 254 RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRS 333 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHTTSTTSSSCHHHHHHHHHHHHHHHHHHCCGGGCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhccccchhhhHHHHHHHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHHHHHHHhCCccCCCHHHHHHHHHHHHHHHH
Confidence 34445556 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhccc
Q 007404 434 LSDQSR 439 (605)
Q Consensus 434 ir~~sr 439 (605)
++++.+
T Consensus 334 lr~~~r 339 (339)
T 1sig_A 334 IADQAR 339 (339)
T ss_dssp HHHC--
T ss_pred HHHhcC
Confidence 998653
No 12
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.59 E-value=1.3e-15 Score=156.29 Aligned_cols=143 Identities=13% Similarity=0.061 Sum_probs=119.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhccCCcCCCcchhHHHHHHHHHHHHHHhhccccc
Q 007404 362 YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTI 441 (605)
Q Consensus 362 ~g~~A~e~LI~~nlrLVvsIAkrY~~~g~d~eDLIQEG~IGLirA~ekFDp~kG~rFSTYA~~wIRqaI~r~ir~~sr~I 441 (605)
++..+|+.||..|.+.++.+|++|.++..+++|++||.|+.+|+...+|++. ..|.+|++.+++|.+.+++++...
T Consensus 18 g~~~~f~~l~~~~~~~l~~~a~~~~~~~~~AeD~vQe~fl~~~~~~~~~~~~--~~~~~wL~~ia~n~~~d~~r~~~~-- 93 (286)
T 3n0r_A 18 GSEMHLLARLAPHLPYIRRYARALTGDQATGDHYVRVALEALAAGELVLDAN--LSPRVALYRVFHAIWLSSGAQLEV-- 93 (286)
T ss_dssp --CCCHHHHHGGGHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTSSCCCSS--SCHHHHHHHHHHHHHSCTTC------
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHhCCHhhHHHHHHHHHHHHHhCchhcCCC--cChHHHHHHHHHHHHHhhcccccc--
Confidence 4567899999999999999999999999999999999999999999999875 369999999999999887753110
Q ss_pred cccccHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHhcCCCHHHHHHHHhCCCCCCCccccccccCCCCCCcccCCCCCCC
Q 007404 442 RLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAET 521 (605)
Q Consensus 442 RlP~~~~~~i~ki~ka~~~L~~elgr~PT~eEIAe~lgis~e~V~~~l~~~~~~~SLD~~i~~d~~~~l~d~l~D~~~~s 521 (605)
+ ... +..
T Consensus 94 ---------------------------~----------------------------------~~~---------~~~--- 100 (286)
T 3n0r_A 94 ---------------------------G----------------------------------HDQ---------GLH--- 100 (286)
T ss_dssp ---------------------------C----------------------------------CCC---------CCC---
T ss_pred ---------------------------C----------------------------------CCc---------ccc---
Confidence 0 000 000
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHh
Q 007404 522 AEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKR 594 (605)
Q Consensus 522 pEe~l~~~el~~~L~~aL~~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~ 594 (605)
....|..+|+.||+++|+||.|+|..+ +|++|||+.+|+|..+|+....+|+++|+..+.
T Consensus 101 ---------~~~~l~~al~~Lp~~~R~v~~L~~~eg----~s~~EIA~~lgis~~tVks~l~rA~~~Lr~~l~ 160 (286)
T 3n0r_A 101 ---------AGDDAAQRLMRIAPRSRQAFLLTALEG----FTPTEAAQILDCDFGEVERLIGDAQAEIDAELA 160 (286)
T ss_dssp ---------TTSHHHHHHHHHSCHHHHHHHHHHTTC----CCHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCC
T ss_pred ---------hHHHHHHHHHhCCHHHeeEEEEEeeCC----CCHHHHHHHhCcCHHHHHHHHHHHHhhhhccCC
Confidence 012478899999999999999999988 999999999999999999999999999997543
No 13
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=99.53 E-value=4e-14 Score=124.22 Aligned_cols=80 Identities=36% Similarity=0.530 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHhhhhHhhhhcc
Q 007404 525 LLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT 604 (605)
Q Consensus 525 ~l~~~el~~~L~~aL~~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~~~L~~yl~~ 604 (605)
.+...++...|..+|+.||++||+||.||||++|++++|++|||+.||||++||++++.+|+++||+.+....|++|+..
T Consensus 3 ~~~~~el~~~l~~aL~~Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~~~~~l~~~~~~ 82 (99)
T 3t72_q 3 SATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSGSSG 82 (99)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667788899999999999999999999998777779999999999999999999999999999999999999999864
No 14
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=99.30 E-value=1.5e-11 Score=105.18 Aligned_cols=75 Identities=13% Similarity=0.166 Sum_probs=69.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHhhhh
Q 007404 519 AETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKH 597 (605)
Q Consensus 519 ~~spEe~l~~~el~~~L~~aL~~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~~~ 597 (605)
..+|++.+...+....|..+|..||+++|+||.|+|+.+ +|++|||+.||||..+|+++++||+++||+.+...+
T Consensus 15 ~~~~~~~~~~~~~~~~l~~~l~~L~~~~r~vl~l~~~~g----~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~~~~ 89 (92)
T 3hug_A 15 EQSTPDEVNAALDRLLIADALAQLSAEHRAVIQRSYYRG----WSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELG 89 (92)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHTSC----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCchHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcC----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 347899999999999999999999999999999999887 999999999999999999999999999999887543
No 15
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=99.26 E-value=6.7e-12 Score=106.66 Aligned_cols=71 Identities=55% Similarity=0.826 Sum_probs=64.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHhhhhHhhhhc
Q 007404 533 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAI 603 (605)
Q Consensus 533 ~~L~~aL~~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~~~L~~yl~ 603 (605)
..|..+|+.||++||+||.++|+++|+..+|++|||+.||||+++|++++.+|++|||..+....++.|+.
T Consensus 10 ~~l~~~l~~L~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~~l~~~~~~~~~~ 80 (87)
T 1tty_A 10 EELEKVLKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSKYLKSLLS 80 (87)
T ss_dssp SHHHHHHTTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBTTBSSHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 45788999999999999999999766666999999999999999999999999999999998888888764
No 16
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=99.24 E-value=3.1e-12 Score=104.95 Aligned_cols=69 Identities=52% Similarity=0.782 Sum_probs=54.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH-hHHhhhhHhhhhc
Q 007404 535 LEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK-NKKRTKHLMQYAI 603 (605)
Q Consensus 535 L~~aL~~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR-~~l~~~~L~~yl~ 603 (605)
|..+|+.||++||+||.++|+++|+.++|++|||+.||+|.++|++++.+|+++|| ..+....++.|++
T Consensus 4 l~~~l~~L~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr~~~~~~~~~~~~~~ 73 (73)
T 1ku3_A 4 LEKALSKLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLKYHESRTRKLRDFLE 73 (73)
T ss_dssp CSSSTTTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTC----------
T ss_pred HHHHHHhCCHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhhHhhHHHHHHhhC
Confidence 45678899999999999999976666699999999999999999999999999999 8888888888863
No 17
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=99.19 E-value=8e-12 Score=101.05 Aligned_cols=66 Identities=44% Similarity=0.674 Sum_probs=59.9
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHhhhhHhhhhc
Q 007404 538 VLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAI 603 (605)
Q Consensus 538 aL~~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~~~L~~yl~ 603 (605)
+|+.||++|++||.++||++|.+.+|++|||+.||+|.++|++++.+|++|||..+....++.|++
T Consensus 2 ~l~~L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~~~~~~~~~~~~~ 67 (68)
T 2p7v_B 2 VLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 67 (68)
T ss_dssp CSCCCCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGSCCGGGGGSCTTC
T ss_pred HHHcCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 367899999999999998755556999999999999999999999999999999999888888864
No 18
>2o7g_A Probable RNA polymerase sigma-C factor; sigma factor, transcription regulation, -10 element recognit domain, transcription; 2.70A {Mycobacterium tuberculosis}
Probab=98.98 E-value=1.1e-09 Score=96.03 Aligned_cols=82 Identities=12% Similarity=0.026 Sum_probs=69.6
Q ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhccCCcCCCcchhHHHHHHHHHHHHHHh
Q 007404 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 435 (605)
Q Consensus 356 L~~~l~~g~~A~e~LI~~nlrLVvsIAkrY~~~g~d~eDLIQEG~IGLirA~ekFDp~kG~rFSTYA~~wIRqaI~r~ir 435 (605)
+.....++..|++.|+..|.+.|+.+|.++ ++..+++|++||+|+.+|+.+.+|++. ..|.+|++..++|.+.++++
T Consensus 15 ~~~~~~gd~~a~~~l~~~~~~~l~~~~~~~-~~~~~aeD~vQe~fl~~~~~~~~~~~~--~~~~~wl~~i~~n~~~d~~R 91 (112)
T 2o7g_A 15 ALSAAKGNGRALEAFIKATQQDVWRFVAYL-SDVGSADDLTQETFLRAIGAIPRFSAR--SSARTWLLAIARHVVADHIR 91 (112)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHGGGCCCS--SCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHHHHH
Confidence 334445668999999999999999999999 888899999999999999999999974 36999999999999999998
Q ss_pred hcccc
Q 007404 436 DQSRT 440 (605)
Q Consensus 436 ~~sr~ 440 (605)
++.+.
T Consensus 92 ~~~~~ 96 (112)
T 2o7g_A 92 HVRSR 96 (112)
T ss_dssp -----
T ss_pred Hhhcc
Confidence 87653
No 19
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=98.98 E-value=8.2e-10 Score=88.58 Aligned_cols=64 Identities=14% Similarity=0.141 Sum_probs=53.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHhhhhH
Q 007404 531 MKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHL 598 (605)
Q Consensus 531 l~~~L~~aL~~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~~~L 598 (605)
....|..+|+.||++++.||.++|..+ +|++|||+.||+|+.+|+++.++|+++||+.+....+
T Consensus 5 ~~~~l~~~l~~L~~~~r~il~l~~~~g----~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l~~~~~ 68 (70)
T 2o8x_A 5 DLVEVTTMIADLTTDQREALLLTQLLG----LSYADAAAVCGCPVGTIRSRVARARDALLADAEPDDL 68 (70)
T ss_dssp HHHHHHTTTTSSCHHHHHHHHHHHTSC----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHcC----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhhcccC
Confidence 456788899999999999999999877 9999999999999999999999999999998876543
No 20
>1h3l_A RNA polymerase sigma factor; transcription, DNA-binding, transcription regulation; 2.37A {Streptomyces coelicolor A3} SCOP: a.177.1.1
Probab=98.92 E-value=1.4e-09 Score=91.05 Aligned_cols=77 Identities=13% Similarity=0.076 Sum_probs=68.4
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhccCCcCCCcchhHHHHHHHHHHHHHHhhccc
Q 007404 361 NYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSR 439 (605)
Q Consensus 361 ~~g~~A~e~LI~~nlrLVvsIAkrY~~~g~d~eDLIQEG~IGLirA~ekFDp~kG~rFSTYA~~wIRqaI~r~ir~~sr 439 (605)
.++..+++.|+..|.+.++.+|.++.++..+++|++||+|+.+|+.+++|++. ..|.+|++.+++|.+.++++++.+
T Consensus 8 ~g~~~af~~l~~~~~~~l~~~~~~~~~~~~~aeD~vQe~fl~~~~~~~~~~~~--~~~~~wl~~i~~n~~~d~~R~~~~ 84 (87)
T 1h3l_A 8 AERSARFERDALEFLDQMYSAALRMTRNPADAEDLVQETYAKAYASFHQFREG--TNLKAWLYRILTNTFINSYRKKQR 84 (87)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHGGGCCSS--SCHHHHHHHHHHHHHHHTCC----
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhcCCC--ccHHHHHHHHHHHHHHHHHHHhcc
Confidence 35688999999999999999999999999999999999999999999999975 379999999999999999987653
No 21
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=98.82 E-value=1.2e-08 Score=91.13 Aligned_cols=69 Identities=17% Similarity=0.213 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHH-hcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHhhhhH
Q 007404 526 LIKKFMKEDLEKVL-DTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHL 598 (605)
Q Consensus 526 l~~~el~~~L~~aL-~~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~~~L 598 (605)
++..+....+..++ ..||+++|+||.++|..+ +|++|||+.||+|..+|+.+.+||+++||..+...++
T Consensus 9 ~e~~~~~~~l~~~l~~~L~~~~r~vl~l~~~~g----~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~~~~~ 78 (113)
T 1xsv_A 9 LVKTLRMNYLFDFYQSLLTNKQRNYLELFYLED----YSLSEIADTFNVSRQAVYDNIRRTGDLVEDYEKKLEL 78 (113)
T ss_dssp HHHHHHHHHHHHHHGGGSCHHHHHHHHHHHTSC----CCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 44455667788999 999999999999999888 9999999999999999999999999999998866443
No 22
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.71 E-value=3.5e-11 Score=121.29 Aligned_cols=147 Identities=12% Similarity=0.054 Sum_probs=107.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHH----HHHHHHHHHhhhccCCcCCCcchhHHHHHHHHHHHHHHhhcc
Q 007404 363 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLV----QEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS 438 (605)
Q Consensus 363 g~~A~e~LI~~nlrLVvsIAkrY~~~g~d~eDLI----QEG~IGLirA~ekFDp~kG~rFSTYA~~wIRqaI~r~ir~~s 438 (605)
|..+++.+...|.++++.+............|+. ||.++.+|+.+..|++.. .|.+|++..+++.+.++.+...
T Consensus 95 D~~~~~~~~~~~~~fi~~l~~~~~~~~~~~~dl~~~~~qe~fl~~~~~~~~~~~~~--~~~~WL~~ia~n~~~d~~r~~~ 172 (258)
T 3clo_A 95 DLVEKRLMEYKFFQKTFSMSPGERLKYRGRCRLRMMNEKGVYQYIDNLVQIMQNTP--AGNVWLIFCLYSLSADQRPEQG 172 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHTTEEEEEEEEEECTTSCEEEEEEEEEEEEECT--TSCEEEEEEEEEECSCCCCCSS
T ss_pred HHHHHHHHHHHHHHHHHhcCHHhccCCeeeEEeecCCcCHHHHHHHHhHHhcCCCC--chHHHHHHHHHHHHcchhhhhH
Confidence 3678999999999999999888777777788886 999999999999998754 6888877766655544322110
Q ss_pred ccccccccHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHhcCCCHHHHHHHHhCCCCCCCccccccccCCCCCCcccCCCC
Q 007404 439 RTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPE 518 (605)
Q Consensus 439 r~IRlP~~~~~~i~ki~ka~~~L~~elgr~PT~eEIAe~lgis~e~V~~~l~~~~~~~SLD~~i~~d~~~~l~d~l~D~~ 518 (605)
+...+..... .+.... .
T Consensus 173 -----------------------------------------------------------~~~~~~~~~~---~~~~~~-~ 189 (258)
T 3clo_A 173 -----------------------------------------------------------IYATITQMER---GEVETL-S 189 (258)
T ss_dssp -----------------------------------------------------------CCCEEEETTT---TEEEEC-C
T ss_pred -----------------------------------------------------------HHHHHHhhcc---cccccc-h
Confidence 0000000000 000000 0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHh
Q 007404 519 AETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKR 594 (605)
Q Consensus 519 ~~spEe~l~~~el~~~L~~aL~~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~ 594 (605)
.+..++..||++||+||.|+ ..| +|++|||+.||+|..||+.+.+||++|||....
T Consensus 190 ---------------~~~~~~~~L~~~erevl~L~-~~G----~s~~EIA~~L~iS~~TVk~~l~ra~~kL~~~~~ 245 (258)
T 3clo_A 190 ---------------LSEEHRNILSEREKEILRCI-RKG----LSSKEIAATLYISVNTVNRHRQNILEKLSVGNS 245 (258)
T ss_dssp ---------------CHHHHTTSSCHHHHHHHHHH-HTT----CCHHHHHHHHTCCHHHHHHHHHHHHHHTTCSSH
T ss_pred ---------------hhHHHHccCCHHHHHHHHHH-HcC----CCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCH
Confidence 13556789999999999997 455 999999999999999999999999999997543
No 23
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=98.66 E-value=7.8e-08 Score=85.93 Aligned_cols=64 Identities=17% Similarity=0.227 Sum_probs=57.3
Q ss_pred HHHHHHHHH-hcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHhhhhH
Q 007404 531 MKEDLEKVL-DTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHL 598 (605)
Q Consensus 531 l~~~L~~aL-~~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~~~L 598 (605)
....+..++ ..||+++++||.++|..| +|++|||+.||+|+.+|+.+.++|+++||+.+...++
T Consensus 11 ~~~~l~~~l~~~L~~~~r~vl~l~y~~g----~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~~~~~ 75 (113)
T 1s7o_A 11 RMNALFEFYAALLTDKQMNYIELYYADD----YSLAEIADEFGVSRQAVYDNIKRTEKILETYEMKLHM 75 (113)
T ss_dssp HHHHHHHHHGGGSCHHHHHHHHHHHHTC----CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcC----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 345677788 899999999999999888 9999999999999999999999999999998865443
No 24
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=98.52 E-value=4.3e-08 Score=83.56 Aligned_cols=61 Identities=16% Similarity=0.200 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHh
Q 007404 529 KFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKR 594 (605)
Q Consensus 529 ~el~~~L~~aL~~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~ 594 (605)
......+..++..|+++|++||.+ |..+ +|++|||+.||||..+|+.++.++++||+....
T Consensus 17 ~~~~~~l~~~l~~Lt~~e~~vl~l-~~~g----~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~ 77 (91)
T 2rnj_A 17 GSHMKKRAELYEMLTEREMEILLL-IAKG----YSNQEIASASHITIKTVKTHVSNILSKLEVQDR 77 (91)
T ss_dssp --------CTGGGCCSHHHHHHHH-HHTT----CCTTHHHHHHTCCHHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHH-HHcC----CCHHHHHHHHCcCHHHHHHHHHHHHHHHCCCCH
Confidence 344566888899999999999999 4555 999999999999999999999999999986433
No 25
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=98.44 E-value=2.2e-07 Score=76.19 Aligned_cols=57 Identities=25% Similarity=0.267 Sum_probs=50.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHh
Q 007404 533 EDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKR 594 (605)
Q Consensus 533 ~~L~~aL~~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~ 594 (605)
..|..++..||++|++||.+ |..+ +|++|||+.||+|..+|+++..++++||+....
T Consensus 8 ~~l~~~l~~L~~~e~~vl~l-~~~g----~s~~eIA~~l~is~~tV~~~~~r~~~kl~~~~~ 64 (79)
T 1x3u_A 8 NDIRARLQTLSERERQVLSA-VVAG----LPNKSIAYDLDISPRTVEVHRANVMAKMKAKSL 64 (79)
T ss_dssp HHHHHHHHHHCHHHHHHHHH-HTTT----CCHHHHHHHTTSCHHHHHHHHHHHHHHTTCCSH
T ss_pred HHHHHHHHhCCHHHHHHHHH-HHcC----CCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCH
Confidence 45778899999999999999 5555 999999999999999999999999999996443
No 26
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=98.44 E-value=2.6e-07 Score=79.57 Aligned_cols=59 Identities=19% Similarity=0.240 Sum_probs=44.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHh
Q 007404 531 MKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKR 594 (605)
Q Consensus 531 l~~~L~~aL~~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~ 594 (605)
....|..++..|+++|++||.++ ..+ +|++|||+.||||..||+.++.++++||+....
T Consensus 17 ~~~~l~~~l~~Lt~~e~~vl~l~-~~g----~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~ 75 (95)
T 3c57_A 17 RGSHMQDPLSGLTDQERTLLGLL-SEG----LTNKQIADRMFLAEKTVKNYVSRLLAKLGMERR 75 (95)
T ss_dssp ----------CCCHHHHHHHHHH-HTT----CCHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHH-HcC----CCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCH
Confidence 34567888999999999999996 555 999999999999999999999999999987543
No 27
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=98.33 E-value=4.2e-07 Score=79.84 Aligned_cols=66 Identities=17% Similarity=0.211 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHH-hcCCHHHHHHHHHHHhcCC---CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHh
Q 007404 528 KKFMKEDLEKVL-DTLNPRERQVVRWRFGLED---GRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKR 594 (605)
Q Consensus 528 ~~el~~~L~~aL-~~L~~rER~VL~LRyGl~d---g~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~ 594 (605)
.....+.+..++ +.|+++|+.+|.+|||+.+ +.++|+.|||+.+|+|+.+|..+ +|+|++|...+.
T Consensus 21 ~~~~~~~l~~~l~~lLT~~Er~~l~~R~~l~~~L~~ge~TQREIA~~lGiS~stISRi-~r~L~~l~~~~k 90 (101)
T 1jhg_A 21 NAYQNDLHLPLLNLMLTPDEREALGTRVRIIEELLRGEMSQRELKNELGAGIATITRG-SNSLKAAPVELR 90 (101)
T ss_dssp HHHHTTCHHHHHHHHSCHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHCCCHHHHHHH-HHHHHHSCHHHH
T ss_pred hcCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhhhHH-HHHHHHccHHHH
Confidence 333445567777 5799999999999999863 34599999999999999999999 899999988654
No 28
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=98.32 E-value=3.4e-07 Score=76.72 Aligned_cols=56 Identities=20% Similarity=0.367 Sum_probs=48.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHhh
Q 007404 535 LEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRT 595 (605)
Q Consensus 535 L~~aL~~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~ 595 (605)
+..++..|+++|++||.+ |..+ +|++|||+.||||..+|+.++.++++||+.....
T Consensus 15 ~~~~~~~Lt~~e~~vl~l-~~~g----~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~ 70 (82)
T 1je8_A 15 TERDVNQLTPRERDILKL-IAQG----LPNKMIARRLDITESTVKVHVKHMLKKMKLKSRV 70 (82)
T ss_dssp --CCGGGSCHHHHHHHHH-HTTT----CCHHHHHHHHTSCHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHccCCHHHHHHHHH-HHcC----CCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHH
Confidence 567788999999999999 5555 9999999999999999999999999999875543
No 29
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=98.16 E-value=1.7e-06 Score=69.79 Aligned_cols=55 Identities=31% Similarity=0.304 Sum_probs=46.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHh
Q 007404 535 LEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKR 594 (605)
Q Consensus 535 L~~aL~~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~ 594 (605)
+...+..|+++|++||.+ |..+ +|.+|||+.||+|..+|+++..++++||+..-.
T Consensus 5 ~~~~~~~L~~~e~~il~~-~~~g----~s~~eIA~~l~is~~tV~~~~~~~~~kl~~~~~ 59 (74)
T 1fse_A 5 EFQSKPLLTKREREVFEL-LVQD----KTTKEIASELFISEKTVRNHISNAMQKLGVKGR 59 (74)
T ss_dssp ---CCCCCCHHHHHHHHH-HTTT----CCHHHHHHHHTSCHHHHHHHHHHHHHHHTCSSH
T ss_pred cCCCCCCCCHHHHHHHHH-HHcC----CCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCH
Confidence 445578899999999999 5555 899999999999999999999999999987543
No 30
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=97.98 E-value=9.8e-06 Score=69.31 Aligned_cols=50 Identities=32% Similarity=0.303 Sum_probs=43.0
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 537 KVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 537 ~aL~~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
.....|+++|++||.+.+ .| +|.+|||+.||||..||+.+..++++||.-
T Consensus 25 ~~~~~Lt~rE~~Vl~l~~-~G----~s~~eIA~~L~iS~~TV~~~~~~i~~Klgv 74 (90)
T 3ulq_B 25 KEQDVLTPRECLILQEVE-KG----FTNQEIADALHLSKRSIEYSLTSIFNKLNV 74 (90)
T ss_dssp ----CCCHHHHHHHHHHH-TT----CCHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred ccccCCCHHHHHHHHHHH-cC----CCHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 346789999999999977 55 999999999999999999999999999964
No 31
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=97.89 E-value=1e-05 Score=62.99 Aligned_cols=45 Identities=29% Similarity=0.329 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHH
Q 007404 544 PRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 593 (605)
Q Consensus 544 ~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l 593 (605)
++|++||.+ |..| +|.+|||+.||+|..+|+.+..++++||+..-
T Consensus 1 ~re~~vl~l-~~~g----~s~~eIA~~l~is~~tV~~~~~~~~~kl~~~~ 45 (61)
T 2jpc_A 1 LRERQVLKL-IDEG----YTNHGISEKLHISIKTVETHRMNMMRKLQVHK 45 (61)
T ss_dssp CHHHHHHHH-HHTS----CCSHHHHHHTCSCHHHHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHH-HHcC----CCHHHHHHHhCCCHHHHHHHHHHHHHHHCCCC
Confidence 579999999 6666 99999999999999999999999999998643
No 32
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=97.80 E-value=2.8e-05 Score=67.70 Aligned_cols=47 Identities=28% Similarity=0.277 Sum_probs=42.9
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 540 DTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 540 ~~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
..|+++|++||.+.+ .+ +|.+|||+.||||..+|+.+..++++||.-
T Consensus 33 ~~Lt~re~~Vl~l~~-~G----~s~~EIA~~L~iS~~TV~~~l~ri~~KLgv 79 (99)
T 1p4w_A 33 KRLSPKESEVLRLFA-EG----FLVTEIAKKLNRSIKTISSQKKSAMMKLGV 79 (99)
T ss_dssp SSCCHHHHHHHHHHH-HT----CCHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHH-cC----CCHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 579999999999854 55 999999999999999999999999999965
No 33
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=97.36 E-value=0.00025 Score=69.91 Aligned_cols=46 Identities=26% Similarity=0.392 Sum_probs=42.2
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 541 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
.|+++|++||.+. ..| +|.+|||++||||..||+.+..++++||.-
T Consensus 175 ~Lt~~e~~vl~~~-~~g----~s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 220 (236)
T 2q0o_A 175 MLSPREMLCLVWA-SKG----KTASVTANLTGINARTVQHYLDKARAKLDA 220 (236)
T ss_dssp SCCHHHHHHHHHH-HTT----CCHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHH-HcC----CCHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 5999999999995 455 999999999999999999999999999965
No 34
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=97.35 E-value=0.00025 Score=69.88 Aligned_cols=46 Identities=28% Similarity=0.549 Sum_probs=42.0
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 541 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
.|+++|++||.+. ..| +|.+|||++||||..||+.++.++++||.-
T Consensus 173 ~Lt~~e~~vl~~~-~~g----~s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 218 (234)
T 1l3l_A 173 WLDPKEATYLRWI-AVG----KTMEEIADVEGVKYNSVRVKLREAMKRFDV 218 (234)
T ss_dssp CCCHHHHHHHHHH-TTT----CCHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHH-HcC----CCHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 5999999999995 455 999999999999999999999999999964
No 35
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=97.08 E-value=0.00059 Score=67.59 Aligned_cols=47 Identities=28% Similarity=0.542 Sum_probs=42.5
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 540 DTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 540 ~~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
..|+++|++||.+. ..| +|.+|||++||||..||+.++.++++||.-
T Consensus 174 ~~Lt~re~~vl~~~-~~G----~s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 220 (237)
T 3szt_A 174 VRLTARETEMLKWT-AVG----KTYGEIGLILSIDQRTVKFHIVNAMRKLNS 220 (237)
T ss_dssp CCCCHHHHHHHHHH-HTT----CCHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHH-HcC----CCHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence 36999999999986 455 999999999999999999999999999864
No 36
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=96.98 E-value=0.0008 Score=67.98 Aligned_cols=46 Identities=26% Similarity=0.416 Sum_probs=42.5
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 541 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
.|+++|++||.+.. .| +|.+|||++||||..||+.++.++++||.-
T Consensus 197 ~Lt~re~~vl~~~~-~G----~s~~eIA~~l~is~~TV~~~~~~~~~kl~~ 242 (265)
T 3qp6_A 197 PLSQREYDIFHWMS-RG----KTNWEIATILNISERTVKFHVANVIRKLNA 242 (265)
T ss_dssp CCCHHHHHHHHHHH-TT----CCHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHH-cC----CCHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 69999999999984 55 999999999999999999999999999964
No 37
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=96.83 E-value=0.0017 Score=47.07 Aligned_cols=40 Identities=25% Similarity=0.216 Sum_probs=32.1
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 007404 541 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~R 584 (605)
.|++.++..+...|..+ +|..|||+.||||+.+|+.++.+
T Consensus 5 ~l~~~~~~~i~~~~~~g----~s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN----VSLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTT----CCHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC----CCHHHHHHHHCcCHHHHHHHHhh
Confidence 47888886666666554 89999999999999999977643
No 38
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=96.21 E-value=0.0099 Score=52.03 Aligned_cols=46 Identities=11% Similarity=0.172 Sum_probs=41.2
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 007404 541 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 590 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR 590 (605)
.+++.-..|-.++|..| +|..|||+.||||+.+|.+++.+|...+.
T Consensus 18 ~~~~~~~~~A~lyYv~g----~tQ~eIA~~lGiSR~~VsrlL~~Ar~~~~ 63 (101)
T 2w7n_A 18 EVGQQTIEIARGVLVDG----KPQATFATSLGLTRGAVSQAVHRVWAAFE 63 (101)
T ss_dssp CCCHHHHHHHHHHHTTC----CCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHcC----CCHHHHHHHHCCCHHHHHHHHHHHHHHHh
Confidence 68888888999999877 99999999999999999999999888763
No 39
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=96.00 E-value=0.014 Score=54.74 Aligned_cols=52 Identities=21% Similarity=0.323 Sum_probs=44.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 535 LEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 535 L~~aL~~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
+...+..|+++|++|+.+. ..+ +|.+|||+.||+|..||+.+..+.++||..
T Consensus 136 ~~~~~~~Lt~rE~~vl~~l-~~g----~s~~~Ia~~l~is~~TV~~~~~~i~~Kl~~ 187 (208)
T 1yio_A 136 LEQLFSSLTGREQQVLQLT-IRG----LMNKQIAGELGIAEVTVKVHRHNIMQKLNV 187 (208)
T ss_dssp HHHHHHTSCHHHHHHHHHH-TTT----CCHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCHHHHHHHHHH-HcC----CcHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 3444568999999999875 333 899999999999999999999999999964
No 40
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=95.86 E-value=0.0078 Score=45.57 Aligned_cols=38 Identities=21% Similarity=0.266 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 007404 543 NPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSA 585 (605)
Q Consensus 543 ~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RA 585 (605)
++..+.|+.+ |..+ +|..|||+.||||+.||+.++.+|
T Consensus 18 ~~~~~~i~~l-~~~g----~s~~eIA~~lgis~~TV~~~l~~a 55 (55)
T 2x48_A 18 DDLVSVAHEL-AKMG----YTVQQIANALGVSERKVRRYLESC 55 (55)
T ss_dssp HHHHHHHHHH-HHTT----CCHHHHHHHHTSCHHHHHHHHTC-
T ss_pred HHHHHHHHHH-HHcC----CCHHHHHHHHCcCHHHHHHHHHhC
Confidence 3445566666 5544 899999999999999999887653
No 41
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=95.60 E-value=0.02 Score=54.14 Aligned_cols=47 Identities=17% Similarity=0.309 Sum_probs=41.5
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 540 DTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 540 ~~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
..|+++|++|+.+.. .+ +|.+|||+.+++|..||+.+..+.++||.-
T Consensus 153 ~~Lt~rE~~vl~~l~-~g----~s~~~Ia~~l~is~~TV~~hi~~i~~Kl~~ 199 (215)
T 1a04_A 153 NQLTPRERDILKLIA-QG----LPNKMIARRLDITESTVKVHVKHMLKKMKL 199 (215)
T ss_dssp GGSCHHHHHHHHHHH-TT----CCHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred cCCCHHHHHHHHHHH-cC----CCHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 469999999998753 44 899999999999999999999999999953
No 42
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=95.14 E-value=0.027 Score=54.05 Aligned_cols=47 Identities=19% Similarity=0.204 Sum_probs=41.2
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 540 DTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 540 ~~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
..|+++|++||.+- ..+ +|.+|||+.+++|..||+.+..+.++||.-
T Consensus 148 ~~LT~rE~~vL~~l-~~g----~s~~eIa~~l~is~~TV~~hi~~l~~KL~~ 194 (225)
T 3c3w_A 148 SGLTDQERTLLGLL-SEG----LTNKQIADRMFLAEKTVKNYVSRLLAKLGM 194 (225)
T ss_dssp TTSCHHHHHHHHHH-HTT----CCHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHH-HCC----CCHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Confidence 46999999999874 334 899999999999999999999999999853
No 43
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=94.73 E-value=0.025 Score=54.10 Aligned_cols=48 Identities=23% Similarity=0.369 Sum_probs=41.5
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 539 LDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 539 L~~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
...|+++|++||.+. ..+ +|.+|||+.|++|..||+.+..+.++||.-
T Consensus 157 ~~~Lt~rE~~vL~~l-~~g----~s~~~Ia~~l~~s~~Tv~~~i~~l~~KL~~ 204 (225)
T 3klo_A 157 YAKLTKREQQIIKLL-GSG----ASNIEIADKLFVSENTVKTHLHNVFKKINA 204 (225)
T ss_dssp HHTSCHHHHHHHHHH-TTT----CCHHHHHHHTTCCHHHHHHHHHHHTTTSCC
T ss_pred cccCCHHHHHHHHHH-HcC----CCHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Confidence 346999999999873 344 899999999999999999999999998843
No 44
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=94.53 E-value=0.069 Score=44.67 Aligned_cols=43 Identities=16% Similarity=0.431 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 545 RERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 545 rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
.++.||.+....+.|...|..|||+.||||+.+|+ +.|.+|.+
T Consensus 11 ~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~----~~L~~Le~ 53 (81)
T 1qbj_A 11 QEQRILKFLEELGEGKATTAHDLSGKLGTPKKEIN----RVLYSLAK 53 (81)
T ss_dssp HHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 45667766554444667999999999999999998 66777764
No 45
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=94.21 E-value=0.12 Score=49.92 Aligned_cols=56 Identities=21% Similarity=0.305 Sum_probs=48.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 531 MKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 531 l~~~L~~aL~~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
........+..|+++++.|+.+.. .+ ++.++||..||+|..+|+....++++||.-
T Consensus 188 ~~~~~~~~l~~L~~r~~~i~~~~~-~g----~~~~eia~~l~~s~~tv~~~l~~i~~kl~~ 243 (258)
T 3p7n_A 188 RRERAAEMLKTLSPRQLEVTTLVA-SG----LRNKEVAARLGLSEKTVKMHRGLVMEKLNL 243 (258)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHH-TT----CCHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHH-cC----CCHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 345667888999999999999865 33 899999999999999999999999999864
No 46
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=94.05 E-value=0.07 Score=44.00 Aligned_cols=44 Identities=16% Similarity=0.416 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 544 PRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 544 ~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
+.++.||.+-.-.+.|.+.|..|||+.||||+.+|+ +.|.+|.+
T Consensus 14 ~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~----~~L~~L~~ 57 (77)
T 1qgp_A 14 DQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEIN----RVLYSLAK 57 (77)
T ss_dssp HHHHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 345677766554544566999999999999999998 45666654
No 47
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=94.05 E-value=0.063 Score=50.76 Aligned_cols=50 Identities=14% Similarity=0.189 Sum_probs=43.5
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHC---CCHHHHHHHHHHHHHHHHh
Q 007404 541 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMG---VSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LG---ISrerVRqie~RALkKLR~ 591 (605)
.|+++|++||.+-. .+-|..+|.+|||+.++ +|..||+.+..+.++||..
T Consensus 145 ~Lt~rE~~vl~~l~-~~~~~~~s~~~Ia~~l~~~~~s~~tv~~~i~~l~~Kl~~ 197 (220)
T 1p2f_A 145 HLPKKEFEILLFLA-ENAGKVVTREKLLETFWEDPVSPRVVDTVIKRIRKAIED 197 (220)
T ss_dssp CCCHHHHHHHHHHH-HTTTSCEEHHHHHHHHCSSCCCTHHHHHHHHHHHHHHCS
T ss_pred ecCHHHHHHHHHHH-HCCCceEcHHHHHHHHhCCCCCcchHHHHHHHHHHHHhc
Confidence 59999999998643 44567799999999999 9999999999999999963
No 48
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=93.55 E-value=0.098 Score=50.35 Aligned_cols=50 Identities=12% Similarity=0.012 Sum_probs=42.8
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHh
Q 007404 541 TLNPRERQVVRWRFGLEDGRMKTLQEIGELM-----GVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~L-----GISrerVRqie~RALkKLR~ 591 (605)
.|+++|.+||.+.. .+-|..+|.+|||+.+ ++|..||+.+..+.++||..
T Consensus 153 ~LT~rE~~vL~~l~-~~~~~~~s~~eIa~~lw~~~~~~s~~tV~~hi~~lr~KL~~ 207 (238)
T 2gwr_A 153 SLTPLEFDLLVALA-RKPRQVFTRDVLLEQVWGYRHPADTRLVNVHVQRLRAKVEK 207 (238)
T ss_dssp CCCHHHHHHHHHHH-HSTTCCBCHHHHHHHHTCCC--CCTHHHHHHHHHHHHHHCS
T ss_pred ccCHHHHHHHHHHH-HCCCceecHHHHHHHHcCCCCCCCcccHHHHHHHHHHHhcc
Confidence 59999999998754 4456779999999999 99999999999999999963
No 49
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=93.43 E-value=0.089 Score=49.98 Aligned_cols=50 Identities=14% Similarity=0.135 Sum_probs=43.7
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHh
Q 007404 541 TLNPRERQVVRWRFGLEDGRMKTLQEIGELM-----GVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~L-----GISrerVRqie~RALkKLR~ 591 (605)
.|+++|.+||.+-. .+.|+.+|.+|||+.+ ++|..||+.+..+.++||..
T Consensus 156 ~Lt~rE~~vL~~l~-~~~~~~~s~~~Ia~~lw~~~~~~s~~tv~~hi~~i~~Kl~~ 210 (230)
T 2oqr_A 156 TLPLKEFDLLEYLM-RNSGRVLTRGQLIDRVWGADYVGDTKTLDVHVKRLRSKIEA 210 (230)
T ss_dssp CCCHHHHHHHHHHH-HTTTSCEEHHHHHHHHTSSCCTTHHHHHHHHHHHHHHHHCS
T ss_pred ecCHHHHHHHHHHH-hCCCceEcHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHhh
Confidence 59999999998754 4456779999999999 99999999999999999963
No 50
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=92.97 E-value=0.023 Score=64.08 Aligned_cols=33 Identities=33% Similarity=0.603 Sum_probs=12.9
Q ss_pred CCCCHHH-HHHHhhcCCCCCCHHHHHHHHHHHHHH
Q 007404 289 DYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDL 322 (605)
Q Consensus 289 ~~~d~l~-yL~~i~~~~~lLT~eEE~eL~~~iq~~ 322 (605)
...||++ ||++| |+.||||+++|++|+++|...
T Consensus 93 ~~~dpvrmyl~em-g~~~ll~~~~e~~~ak~ie~g 126 (613)
T 3iyd_F 93 RTTDPVRMYMREM-GTVELLTREGEIDIAKRIEDG 126 (613)
T ss_dssp ------------C---------CSSSTTTHHHHHH
T ss_pred CCCCcHHHHHHHh-cccccCCchhHHHHHHHHHHh
Confidence 3589999 99999 999999999999999999873
No 51
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=92.50 E-value=0.13 Score=48.48 Aligned_cols=50 Identities=20% Similarity=0.302 Sum_probs=43.5
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHC-----CCHHHHHHHHHHHHHHHHh
Q 007404 541 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMG-----VSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LG-----ISrerVRqie~RALkKLR~ 591 (605)
.|+++|++||.+-. .+-|..+|.+|||+.++ +|..||+.+..+.++||..
T Consensus 151 ~Lt~rE~~vL~~l~-~~~~~~~s~~eIa~~l~~~~~~~s~~tv~~hi~~l~~Kl~~ 205 (225)
T 1kgs_A 151 DLTKKEYQILEYLV-MNKNRVVTKEELQEHLWSFDDEVFSDVLRSHIKNLRKKVDK 205 (225)
T ss_dssp CCCHHHHHHHHHHH-HTTTSCEEHHHHHHHCC-----CHHHHHHHHHHHHHHHHHT
T ss_pred ecCHHHHHHHHHHH-hCCCcccCHHHHHHHhcCCCCCCCcchHHHHHHHHHHHhhC
Confidence 59999999998654 44456799999999998 9999999999999999964
No 52
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=92.32 E-value=0.13 Score=37.28 Aligned_cols=37 Identities=16% Similarity=0.290 Sum_probs=26.5
Q ss_pred CCHHH-HHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 007404 542 LNPRE-RQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES 583 (605)
Q Consensus 542 L~~rE-R~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~ 583 (605)
|++.+ +.|+.+ +..+ .|..+||+.||||+.||..++.
T Consensus 6 ~~~~~~~~i~~l-~~~g----~s~~~ia~~lgvs~~Tv~r~l~ 43 (52)
T 1jko_C 6 INKHEQEQISRL-LEKG----HPRQQLAIIFGIGVSTLYRYFP 43 (52)
T ss_dssp SCTTHHHHHHHH-HHTT----CCHHHHHHTTSCCHHHHHHHSC
T ss_pred CCHHHHHHHHHH-HHcC----CCHHHHHHHHCCCHHHHHHHHH
Confidence 34433 345554 4333 8999999999999999997654
No 53
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=92.22 E-value=0.12 Score=49.00 Aligned_cols=50 Identities=16% Similarity=0.082 Sum_probs=42.9
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHC-----CCHHHHHHHHHHHHHHHHh
Q 007404 541 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMG-----VSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LG-----ISrerVRqie~RALkKLR~ 591 (605)
.|+++|.+||.+-. .+.|..+|.+|||+.++ +|..||+.+..+.++||..
T Consensus 159 ~Lt~rE~~vL~~l~-~g~~~~~s~~~Ia~~l~~~~~~~s~~tv~~hi~~l~~Kl~~ 213 (233)
T 1ys7_A 159 DLTKREFDLLAVLA-EHKTAVLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEA 213 (233)
T ss_dssp CCCHHHHHHHHHHH-HTTTCCBCHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHH-hCCCCeEcHHHHHHHhcCcccCCCccCHHHHHHHHHHHhcc
Confidence 59999999998754 45567799999999998 9999999999999999974
No 54
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=92.10 E-value=0.22 Score=39.70 Aligned_cols=44 Identities=14% Similarity=0.229 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 542 LNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 542 L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
+++..+.||.+.- .++.++|..|||+.+|+|+.+|. +.++.|++
T Consensus 8 m~~~~~~IL~~L~--~~~~~~s~~eLA~~lglsr~tv~----~~l~~L~~ 51 (67)
T 2heo_A 8 GDNLEQKILQVLS--DDGGPVAIFQLVKKCQVPKKTLN----QVLYRLKK 51 (67)
T ss_dssp -CHHHHHHHHHHH--HHCSCEEHHHHHHHHCSCHHHHH----HHHHHHHH
T ss_pred ccHHHHHHHHHHH--HcCCCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 3444556666542 23456999999999999999998 66667765
No 55
>3ugo_A RNA polymerase sigma factor; protein-DNA complex, bacterial promoter opening, G-quartet, quadruplex, DNA binding; 2.10A {Thermus aquaticus} PDB: 3ugp_A 4gor_A 1ku2_A 3lev_A* 3les_A*
Probab=91.38 E-value=0.036 Score=55.41 Aligned_cols=51 Identities=24% Similarity=0.382 Sum_probs=0.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHHHH
Q 007404 535 LEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMG--VSRERIRQIESSAFRKLK 590 (605)
Q Consensus 535 L~~aL~~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LG--ISrerVRqie~RALkKLR 590 (605)
+...+..|++.++. |...|+.+ .|++|||+.|| ||.++|+.++.+|++.|.
T Consensus 192 l~e~i~~l~~~~~~-L~~~~~~~----ps~~EIAe~Lg~~is~~tVk~~l~~ar~~ls 244 (245)
T 3ugo_A 192 MVETINKLSRTARQ-LQQELGRE----PSYEEIAEAMGPGWDAKRVEETLKIAQEPVS 244 (245)
T ss_dssp ----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHH-HHHHhCCC----CCHHHHHHHHCCCCCHHHHHHHHHHHhhccC
Confidence 45556777777777 44556655 89999999999 999999999999988763
No 56
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=90.96 E-value=0.089 Score=49.83 Aligned_cols=50 Identities=8% Similarity=0.076 Sum_probs=43.5
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHC-----CCHHHHHHHHHHHHHHHHh
Q 007404 541 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMG-----VSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LG-----ISrerVRqie~RALkKLR~ 591 (605)
.|+++|++||.+-. .+.|..+|.+|||+.++ +|..||+.+..+.++||..
T Consensus 143 ~Lt~rE~~vL~~l~-~~~~~~~s~~~Ia~~l~~~~~~~s~~tv~~~i~~lr~KL~~ 197 (223)
T 2hqr_A 143 EVKGKPFEVLTHLA-RHRDQIVSKEQLLDAIWEEPEMVTPNVIEVAINQIRQKMDK 197 (223)
T ss_dssp CCCSTTTHHHHHHH-HTCSEEEEHHHHHHHHCCSSCSCGGGTHHHHHHHHHHHHHT
T ss_pred ecCHHHHHHHHHHH-hCCCCcCCHHHHHHHhcCCccCCCCcCHHHHHHHHHHHHhc
Confidence 59999999998754 34456799999999999 9999999999999999974
No 57
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=90.90 E-value=0.58 Score=38.94 Aligned_cols=47 Identities=15% Similarity=0.271 Sum_probs=35.8
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 539 LDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 539 L~~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
...|++.+..+|...+..+ .+.|..|||+.+|+|+.+|+ +.+++|.+
T Consensus 16 ~~~l~~~~~~~l~~l~~~~--~~~t~~ela~~l~is~~tv~----~~l~~L~~ 62 (109)
T 2d1h_A 16 CYKITDTDVAVLLKMVEIE--KPITSEELADIFKLSKTTVE----NSLKKLIE 62 (109)
T ss_dssp HHTCCHHHHHHHHHHHHHC--SCEEHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHcC--CCCCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 4578998888876555322 24999999999999999999 55666643
No 58
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=90.58 E-value=0.19 Score=49.08 Aligned_cols=50 Identities=22% Similarity=0.325 Sum_probs=43.1
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHH-----HHCCCHHHHHHHHHHHHHHHHh
Q 007404 541 TLNPRERQVVRWRFGLEDGRMKTLQEIGE-----LMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~~~Tl~EIAe-----~LGISrerVRqie~RALkKLR~ 591 (605)
.|+++|++||.+.. .+.|..+|.+|||+ .++++..||+.+..+.++||..
T Consensus 182 ~LT~rE~evL~ll~-~g~~~~~s~~eIa~~l~~~~l~~s~~TV~~hi~~lr~KL~~ 236 (249)
T 3q9s_A 182 RLSPKEFDILALLI-RQPGRVYSRQEIGQEIWQGRLPEGSNVVDVHMANLRAKLRD 236 (249)
T ss_dssp CCCHHHHHHHHHHH-HSTTCCCCHHHHHHHHHTTCSCTTCSHHHHHHHHHHHHHCC
T ss_pred ecCHHHHHHHHHHH-HCCCceEcHHHHHHHhcCCCCCCCccCHHHHHHHHHHHhhc
Confidence 59999999999865 44567799999999 5888999999999999999864
No 59
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=90.52 E-value=0.65 Score=41.03 Aligned_cols=49 Identities=10% Similarity=0.131 Sum_probs=38.7
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCC-CCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 537 KVLDTLNPRERQVVRWRFGLEDGRM-KTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 537 ~aL~~L~~rER~VL~LRyGl~dg~~-~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
...-.|++.+..||..-... +.+ .|..|||+.+|+|+.||. |.+++|.+
T Consensus 19 ~~~~gLt~~e~~il~~L~~~--~~~~~t~~eLa~~l~~s~sTV~----r~L~~L~~ 68 (123)
T 3r0a_A 19 KCALNLTKADLNVMKSFLNE--PDRWIDTDALSKSLKLDVSTVQ----RSVKKLHE 68 (123)
T ss_dssp HHHHTCCHHHHHHHHHHHHS--TTCCEEHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHC--CCCCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 34557999999998765533 345 899999999999999999 66777765
No 60
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=90.51 E-value=0.25 Score=47.18 Aligned_cols=41 Identities=20% Similarity=0.276 Sum_probs=33.1
Q ss_pred cCCHHHHHHHHHH--HhcCCCCCCCHHHHHHHHCCCHHHHHHH
Q 007404 541 TLNPRERQVVRWR--FGLEDGRMKTLQEIGELMGVSRERIRQI 581 (605)
Q Consensus 541 ~L~~rER~VL~LR--yGl~dg~~~Tl~EIAe~LGISrerVRqi 581 (605)
.|+++|++||..- |....|.|.|.+|||+.||+|..+|+.+
T Consensus 2 ~lt~~q~~il~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~ 44 (196)
T 3k2z_A 2 DLTERQRKVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLH 44 (196)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHH
Confidence 5899999999775 3334566799999999999999988743
No 61
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=90.46 E-value=0.39 Score=46.47 Aligned_cols=50 Identities=20% Similarity=0.299 Sum_probs=43.7
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHh
Q 007404 541 TLNPRERQVVRWRFGLEDGRMKTLQEIGELM-----GVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~L-----GISrerVRqie~RALkKLR~ 591 (605)
.|+++|.+||.+.. .+.|+.+|.+||++.+ +++..+|+.+..+.++||..
T Consensus 176 ~LT~rE~~iL~~l~-~~~~~~~s~~~i~~~lw~~~~~~~~~tv~~~i~~lr~KL~~ 230 (250)
T 3r0j_A 176 SLSPTEFTLLRYFV-INAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDT 230 (250)
T ss_dssp CCCHHHHHHHHHHH-HTTTCCBCHHHHHHHHTTTSCCSCTHHHHHHHHHHHHHHCC
T ss_pred ecCHHHHHHHHHHH-HCCCceEcHHHHHHHHcCCCCCCCccCHHHHHHHHHHhhcC
Confidence 59999999998765 4457789999999999 78999999999999999964
No 62
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=90.20 E-value=0.36 Score=42.53 Aligned_cols=40 Identities=25% Similarity=0.216 Sum_probs=32.0
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 007404 541 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~R 584 (605)
.|++.++..|...+..+ +|..+||+.||+|+.||+.+..+
T Consensus 6 ~~s~~~r~~i~~~~~~G----~s~~~ia~~lgis~~Tv~r~~~~ 45 (141)
T 1u78_A 6 ALSDTERAQLDVMKLLN----VSLHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp CCCHHHHHHHHHHHHTT----CCHHHHHHHHTCCHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHHcC----CCHHHHHHHHCcCHHHHHHHHHc
Confidence 47777777666656444 89999999999999999987754
No 63
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=89.83 E-value=0.53 Score=40.31 Aligned_cols=41 Identities=15% Similarity=-0.052 Sum_probs=30.4
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 007404 541 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSA 585 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RA 585 (605)
.+++.++.-+...+..+ +|..+||+.||||+.||+.++.+-
T Consensus 17 ~~s~~~r~~i~~~~~~g----~s~~~ia~~lgis~~Tv~~w~~~~ 57 (128)
T 1pdn_C 17 PLPNNIRLKIVEMAADG----IRPCVISRQLRVSHGCVSKILNRY 57 (128)
T ss_dssp CCCHHHHHHHHHHHHTT----CCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC----CCHHHHHHHHCcCHHHHHHHHHHH
Confidence 45665555444444443 899999999999999999887664
No 64
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=88.52 E-value=0.79 Score=41.42 Aligned_cols=45 Identities=24% Similarity=0.386 Sum_probs=34.0
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 540 DTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 540 ~~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
..|++.++.||.+-.. + ...|+.|||+.+|+|+.+|+ +.+++|.+
T Consensus 5 ~~ld~~d~~il~~L~~--~-~~~s~~ela~~lg~s~~tv~----~~l~~L~~ 49 (151)
T 2dbb_A 5 RKLDRVDMQLVKILSE--N-SRLTYRELADILNTTRQRIA----RRIDKLKK 49 (151)
T ss_dssp -CCCHHHHHHHHHHHH--C-TTCCHHHHHHHTTSCHHHHH----HHHHHHHH
T ss_pred hhCCHHHHHHHHHHHH--c-CCCCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 3588999998876432 2 24899999999999999999 44555554
No 65
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=87.85 E-value=1 Score=40.56 Aligned_cols=44 Identities=14% Similarity=0.217 Sum_probs=33.3
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 541 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
.|++.++.||.+-... .+.|+.|||+.+|+|+.+|+ +.+++|.+
T Consensus 2 ~ld~~d~~il~~L~~~---~~~s~~ela~~lg~s~~tv~----~~l~~L~~ 45 (144)
T 2cfx_A 2 KLDQIDLNIIEELKKD---SRLSMRELGRKIKLSPPSVT----ERVRQLES 45 (144)
T ss_dssp CCCHHHHHHHHHHHHC---SCCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHc---CCCCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 3788888888765322 24899999999999999999 44555543
No 66
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=87.61 E-value=0.86 Score=40.95 Aligned_cols=41 Identities=17% Similarity=0.006 Sum_probs=30.7
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 007404 541 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSA 585 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RA 585 (605)
.++..+|.-|...+..+ +|..+||+.||||+.||+.++.+-
T Consensus 32 ~~s~e~r~~iv~~~~~G----~s~~~iA~~lgis~~TV~rw~~~~ 72 (149)
T 1k78_A 32 PLPDVVRQRIVELAHQG----VRPCDISRQLRVSHGCVSKILGRY 72 (149)
T ss_dssp CCCHHHHHHHHHHHHTT----CCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcC----CCHHHHHHHHCcCHHHHHHHHHHH
Confidence 45655555444445433 899999999999999999887764
No 67
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=87.54 E-value=0.93 Score=41.82 Aligned_cols=36 Identities=17% Similarity=0.347 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHH
Q 007404 542 LNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQ 580 (605)
Q Consensus 542 L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRq 580 (605)
|++.++.||.+- ..+ .+.|+.|||+.+|+|+.+|+.
T Consensus 1 lD~~d~~il~~L--~~~-~~~s~~~la~~lg~s~~tv~~ 36 (162)
T 3i4p_A 1 MDRLDRKILRIL--QED-STLAVADLAKKVGLSTTPCWR 36 (162)
T ss_dssp CCHHHHHHHHHH--TTC-SCSCHHHHHHHHTCCHHHHHH
T ss_pred CCHHHHHHHHHH--HHC-CCCCHHHHHHHHCcCHHHHHH
Confidence 567788888764 223 348999999999999999993
No 68
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=87.43 E-value=0.99 Score=40.07 Aligned_cols=43 Identities=16% Similarity=0.373 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 542 LNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 542 L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
|++.++.||..-. .+ .+.|+.|||+.+|+|+.+|+ +.+++|.+
T Consensus 2 ld~~~~~il~~L~-~~--~~~~~~ela~~lg~s~~tv~----~~l~~L~~ 44 (141)
T 1i1g_A 2 IDERDKIILEILE-KD--ARTPFTEIAKKLGISETAVR----KRVKALEE 44 (141)
T ss_dssp CCSHHHHHHHHHH-HC--TTCCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred CCHHHHHHHHHHH-Hc--CCCCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 6778888887543 22 24899999999999999999 55666654
No 69
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=87.39 E-value=0.75 Score=44.52 Aligned_cols=35 Identities=14% Similarity=0.176 Sum_probs=28.0
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q 007404 547 RQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAF 586 (605)
Q Consensus 547 R~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RAL 586 (605)
..+..+ |..| +|..|||+.||||+.+|.+++..|.
T Consensus 15 ~ria~~-y~~g----~tQ~eIA~~lGiSr~~VSR~L~~A~ 49 (192)
T 1zx4_A 15 LRLMRM-KNDG----MSQKDIAAKEGLSQAKVTRALQAAS 49 (192)
T ss_dssp HHHHHH-HHTT----CCHHHHHHHHTCCHHHHHHHHHHHT
T ss_pred HHHHHH-HHcC----CCHHHHHHHhCcCHHHHHHHHHHhc
Confidence 345555 5554 9999999999999999999887764
No 70
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=86.82 E-value=1.3 Score=39.10 Aligned_cols=48 Identities=13% Similarity=0.157 Sum_probs=34.4
Q ss_pred hcCCHHHHHHHHHHHhc-CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 540 DTLNPRERQVVRWRFGL-EDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 540 ~~L~~rER~VL~LRyGl-~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
..|++.+..+|..-+.+ ..+.+.|..+||+.+|+|+.+|+ +++++|.+
T Consensus 9 ~~lt~~~~~~L~~l~~l~~~~~~~s~~ela~~l~is~~tv~----~~l~~Le~ 57 (139)
T 2x4h_A 9 SNLSRREFSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVF----EEVSHLEE 57 (139)
T ss_dssp --CCHHHHHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred hhcCHHHHHHHHHHHHHHhcCCCcCHHHHHHHhCCChHHHH----HHHHHHHH
Confidence 46888888777665432 23345899999999999999999 55566544
No 71
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=86.71 E-value=1.3 Score=36.69 Aligned_cols=44 Identities=14% Similarity=0.233 Sum_probs=33.8
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 541 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
.|++.+..||..-...+ +.|..|||+.+|+|+.+|+ +.+++|.+
T Consensus 17 ~l~~~~~~il~~l~~~~---~~s~~ela~~l~is~~tv~----~~l~~L~~ 60 (109)
T 1sfx_A 17 SFKPSDVRIYSLLLERG---GMRVSEIARELDLSARFVR----DRLKVLLK 60 (109)
T ss_dssp CCCHHHHHHHHHHHHHC---CBCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcC---CCCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 47888888887654322 3999999999999999999 55555544
No 72
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=86.69 E-value=0.49 Score=39.79 Aligned_cols=22 Identities=5% Similarity=0.166 Sum_probs=20.0
Q ss_pred CCHHHHHHHHCCCHHHHHHHHH
Q 007404 562 KTLQEIGELMGVSRERIRQIES 583 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRqie~ 583 (605)
.|..|||+.||||+.+|+++++
T Consensus 31 ~sa~eLAk~LgiSk~aVr~~L~ 52 (82)
T 1oyi_A 31 ATAAQLTRQLNMEKREVNKALY 52 (82)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHH
Confidence 9999999999999999996554
No 73
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=86.56 E-value=1.4 Score=36.54 Aligned_cols=24 Identities=13% Similarity=0.232 Sum_probs=21.4
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHH
Q 007404 562 KTLQEIGELMGVSRERIRQIESSA 585 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRqie~RA 585 (605)
.|+.+||..||||+.+|+++..+.
T Consensus 39 ~s~~~iA~~~gIs~sTl~rW~k~~ 62 (87)
T 2elh_A 39 ESKASVARDIGVPESTLRGWCKNE 62 (87)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHH
Confidence 799999999999999999887543
No 74
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=86.50 E-value=4 Score=33.86 Aligned_cols=46 Identities=17% Similarity=0.351 Sum_probs=31.5
Q ss_pred HHHhcC-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 537 KVLDTL-NPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 537 ~aL~~L-~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
..+..| ++....||.+- ++ ++|..|||+.+|+|+.+|+ +.+++|.+
T Consensus 23 ~~~~~l~~~~r~~Il~~L---~~--~~~~~eLa~~l~is~~tv~----~~L~~L~~ 69 (96)
T 1y0u_A 23 RYNYAVTNPVRRKILRML---DK--GRSEEEIMQTLSLSKKQLD----YHLKVLEA 69 (96)
T ss_dssp HHHHHHSCHHHHHHHHHH---HT--TCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHH---cC--CCCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 344333 45555666654 22 3999999999999999999 45556654
No 75
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=86.20 E-value=1.5 Score=39.75 Aligned_cols=44 Identities=23% Similarity=0.390 Sum_probs=33.2
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 541 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
.|++.++.||.+-.. + ...|+.|||+.+|+|+.+|+ +-+++|.+
T Consensus 5 ~ld~~d~~il~~L~~--~-~~~s~~ela~~lg~s~~tv~----~~l~~L~~ 48 (152)
T 2cg4_A 5 LIDNLDRGILEALMG--N-ARTAYAELAKQFGVSPETIH----VRVEKMKQ 48 (152)
T ss_dssp CCCHHHHHHHHHHHH--C-TTSCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred ccCHHHHHHHHHHHH--c-CCCCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 478888888876432 2 24899999999999999999 44555544
No 76
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=85.82 E-value=1.5 Score=36.17 Aligned_cols=50 Identities=10% Similarity=0.246 Sum_probs=33.6
Q ss_pred HHHHHhcCC-HHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 535 LEKVLDTLN-PRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 535 L~~aL~~L~-~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
+..++..|. +.+..||.+- . .+.+.|..|||+.+|+|+.+|+ +.+++|.+
T Consensus 14 ~~~~~~~l~~~~~~~il~~l--~-~~~~~s~~ela~~l~is~~tvs----~~l~~L~~ 64 (99)
T 3cuo_A 14 AAALLKAMSHPKRLLILCML--S-GSPGTSAGELTRITGLSASATS----QHLARMRD 64 (99)
T ss_dssp HHHHHHHHCSHHHHHHHHHH--T-TCCSEEHHHHHHHHCCCHHHHH----HHHHHHHH
T ss_pred HHHHHHHhCChHHHHHHHHH--H-hCCCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 344444443 5566666543 2 3446999999999999999999 55556643
No 77
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=85.66 E-value=2.5 Score=36.92 Aligned_cols=53 Identities=19% Similarity=0.249 Sum_probs=38.3
Q ss_pred HHHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 533 EDLEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 533 ~~L~~aL~--~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
..+...+. .|++.+..|+.+-+..+ .+.|..|||+.+|+|+.+|. +.+++|.+
T Consensus 13 ~~~~~~~~~~gl~~~~~~il~~L~~~~--~~~t~~ela~~l~~~~stvs----~~l~~L~~ 67 (152)
T 1ku9_A 13 ELFSELAKIHGLNKSVGAVYAILYLSD--KPLTISDIMEELKISKGNVS----MSLKKLEE 67 (152)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHCS--SCEEHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHcCCChhHHHHHHHHHHcC--CCCCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 33444443 58999999887765333 35999999999999999999 55555543
No 78
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=85.59 E-value=0.79 Score=41.11 Aligned_cols=35 Identities=26% Similarity=0.230 Sum_probs=26.3
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHH
Q 007404 540 DTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQ 580 (605)
Q Consensus 540 ~~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRq 580 (605)
..|+.| .+|+.+-. .+ +|+.|||+.+|+|..||..
T Consensus 60 ~aLs~R-~eV~klL~-~G----~syreIA~~~g~S~aTIsR 94 (119)
T 3kor_A 60 QSLSQR-LQVAKMIK-QG----YTYATIEQESGASTATISR 94 (119)
T ss_dssp HHHHHH-HHHHHHHH-HT----CCHHHHHHHHCCCHHHHHH
T ss_pred HHHHHH-HHHHHHHH-cC----CCHHHHHHHHCCCHHHHHH
Confidence 345555 56666632 33 9999999999999999983
No 79
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=85.55 E-value=1.1 Score=38.21 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=34.7
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhH
Q 007404 541 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 592 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 592 (605)
.+.+....||...+- .|.++|..|||+.+|+|+.+|+ +++++|...
T Consensus 15 ~~~~~~l~Il~~l~~--~g~~~s~~eLa~~lgvs~~tV~----~~L~~L~~~ 60 (110)
T 1q1h_A 15 LLGDDVIDVLRILLD--KGTEMTDEEIANQLNIKVNDVR----KKLNLLEEQ 60 (110)
T ss_dssp TSCSTTHHHHHHHHH--HCSCBCHHHHHHTTTSCHHHHH----HHHHHHHHH
T ss_pred HcChHHHHHHHHHHH--cCCCCCHHHHHHHHCcCHHHHH----HHHHHHHHC
Confidence 355666677766543 2334899999999999999999 777887763
No 80
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=85.30 E-value=1.5 Score=33.53 Aligned_cols=29 Identities=10% Similarity=0.154 Sum_probs=23.8
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhHH
Q 007404 564 LQEIGELMGVSRERIRQIESSAFRKLKNKK 593 (605)
Q Consensus 564 l~EIAe~LGISrerVRqie~RALkKLR~~l 593 (605)
+.+||..|||++.+|+++... ...++..+
T Consensus 28 ~~~vA~~~gIs~~tl~~W~~~-~~~~~~~~ 56 (59)
T 2glo_A 28 QRATARKYNIHRRQIQKWLQC-ESNLRSSV 56 (59)
T ss_dssp HHHHHHHTTSCHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHH-HHHHHHHH
Confidence 999999999999999998754 55666544
No 81
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=85.28 E-value=1.4 Score=39.82 Aligned_cols=44 Identities=30% Similarity=0.430 Sum_probs=33.4
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 541 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
.|++.++.||.+-.. + | +.|+.|||+.+|+|+.+|+ +-+++|.+
T Consensus 4 ~ld~~~~~iL~~L~~-~-~-~~s~~ela~~lg~s~~tv~----~~l~~L~~ 47 (150)
T 2w25_A 4 ALDDIDRILVRELAA-D-G-RATLSELATRAGLSVSAVQ----SRVRRLES 47 (150)
T ss_dssp CCCHHHHHHHHHHHH-C-T-TCCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred ccCHHHHHHHHHHHH-c-C-CCCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 488889888886532 2 2 4999999999999999999 44455543
No 82
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=84.94 E-value=2 Score=37.56 Aligned_cols=52 Identities=17% Similarity=0.236 Sum_probs=38.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCC-CCCCCHHHHHHHHCCCHHHHHHHHH
Q 007404 532 KEDLEKVLDTLNPRERQVVRWRFGLED-GRMKTLQEIGELMGVSRERIRQIES 583 (605)
Q Consensus 532 ~~~L~~aL~~L~~rER~VL~LRyGl~d-g~~~Tl~EIAe~LGISrerVRqie~ 583 (605)
...|...+..|++.|+.|..+....-+ -..+|..|||+..|+|..+|-..-+
T Consensus 9 ~~~i~~~~~~ls~~e~~ia~yil~~~~~~~~~si~elA~~~~vS~aTv~Rf~k 61 (111)
T 2o3f_A 9 LAIIQSMXHXLPPSERKLADYILAHPHXAIESTVNEISALANSSDAAVIRLCX 61 (111)
T ss_dssp HHHHHHHGGGSCHHHHHHHHHHHHCHHHHHTCCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHChHHHHhcCHHHHHHHHCCCHHHHHHHHH
Confidence 345777788999999998875442200 0138999999999999999986554
No 83
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=84.92 E-value=1.9 Score=39.05 Aligned_cols=44 Identities=25% Similarity=0.543 Sum_probs=33.1
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 541 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
.|++.++.||.+-.. ++ +.|+.|||+.+|+|+.+|++ -+++|.+
T Consensus 4 ~ld~~~~~il~~L~~--~~-~~s~~ela~~lg~s~~tv~~----~l~~L~~ 47 (151)
T 2cyy_A 4 PLDEIDKKIIKILQN--DG-KAPLREISKITGLAESTIHE----RIRKLRE 47 (151)
T ss_dssp CCCHHHHHHHHHHHH--CT-TCCHHHHHHHHCSCHHHHHH----HHHHHHH
T ss_pred CcCHHHHHHHHHHHH--cC-CCCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 478888888876432 22 49999999999999999994 4455544
No 84
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=84.84 E-value=1.9 Score=34.96 Aligned_cols=27 Identities=22% Similarity=0.183 Sum_probs=23.0
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 561 MKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 561 ~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
+.|..|||+.+|+|+.+|+ +.+++|.+
T Consensus 14 ~~s~~eLa~~lgvs~~tv~----r~L~~L~~ 40 (81)
T 2htj_A 14 GGKTAEIAEALAVTDYQAR----YYLLLLEK 40 (81)
T ss_dssp CCCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 4899999999999999999 56666654
No 85
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=84.84 E-value=1.4 Score=40.29 Aligned_cols=38 Identities=18% Similarity=0.172 Sum_probs=30.4
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHH
Q 007404 541 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQI 581 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqi 581 (605)
.|++.++.||.+-.. ++ +.|+.|||+.+|+|+.+|+.+
T Consensus 7 ~ld~~~~~il~~L~~--~~-~~s~~ela~~lg~s~~tv~~~ 44 (162)
T 2p5v_A 7 TLDKTDIKILQVLQE--NG-RLTNVELSERVALSPSPCLRR 44 (162)
T ss_dssp CCCHHHHHHHHHHHH--CT-TCCHHHHHHHHTSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--cC-CCCHHHHHHHHCcCHHHHHHH
Confidence 488888888876543 22 389999999999999999944
No 86
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=84.45 E-value=1.7 Score=39.14 Aligned_cols=43 Identities=12% Similarity=0.266 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 542 LNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 542 L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
|++.++.||.+- ..+ .+.|+.|||+.+|+|+.+|+ +-+++|.+
T Consensus 1 ld~~~~~il~~L--~~~-~~~~~~ela~~lg~s~~tv~----~~l~~L~~ 43 (150)
T 2pn6_A 1 MDEIDLRILKIL--QYN-AKYSLDEIAREIRIPKATLS----YRIKKLEK 43 (150)
T ss_dssp CCHHHHHHHHHH--TTC-TTSCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred CChHHHHHHHHH--HHc-CCCCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 566777787653 222 25999999999999999999 44555544
No 87
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=84.24 E-value=2.3 Score=37.32 Aligned_cols=50 Identities=20% Similarity=0.270 Sum_probs=35.8
Q ss_pred HHHHHHHHHhc----CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 007404 531 MKEDLEKVLDT----LNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES 583 (605)
Q Consensus 531 l~~~L~~aL~~----L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~ 583 (605)
+...+...+.. |++.|..||..-+..+ +.|..|||+.+|+++.+|.+++.
T Consensus 20 ~~~~~~~~l~~~~~~lt~~~~~vL~~l~~~~---~~t~~eLa~~l~~~~~tvs~~l~ 73 (142)
T 3ech_A 20 VRTRIQSELDCQRLDLTPPDVHVLKLIDEQR---GLNLQDLGRQMCRDKALITRKIR 73 (142)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHTT---TCCHHHHHHHHC---CHHHHHHH
T ss_pred HHHHHHHHHhhccCCCCHHHHHHHHHHHhCC---CcCHHHHHHHhCCCHHHHHHHHH
Confidence 44556666664 9999999988776543 49999999999999999994443
No 88
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=84.18 E-value=1.8 Score=40.43 Aligned_cols=44 Identities=25% Similarity=0.543 Sum_probs=33.6
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 541 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
.|++.++.||.+-.. ++ ..|+.|||+.+|+|+.+|++ -+++|.+
T Consensus 24 ~ld~~d~~IL~~L~~--~~-~~s~~eLA~~lglS~~tv~~----rl~~L~~ 67 (171)
T 2e1c_A 24 PLDEIDKKIIKILQN--DG-KAPLREISKITGLAESTIHE----RIRKLRE 67 (171)
T ss_dssp CCCHHHHHHHHHHHH--CT-TCCHHHHHHHHTSCHHHHHH----HHHHHHH
T ss_pred CCCHHHHHHHHHHHH--cC-CCCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 588899998876543 22 49999999999999999994 3455543
No 89
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=84.07 E-value=1.6 Score=36.42 Aligned_cols=42 Identities=17% Similarity=0.224 Sum_probs=28.7
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 007404 542 LNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSA 585 (605)
Q Consensus 542 L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RA 585 (605)
.++.++.-+...|..++| .|+.+||..+|||+.+|+++..+.
T Consensus 6 ys~e~k~~~v~~~~~~~g--~s~~~ia~~~gIs~~tl~rW~~~~ 47 (97)
T 2jn6_A 6 YSEEFKRDAVALYENSDG--ASLQQIANDLGINRVTLKNWIIKY 47 (97)
T ss_dssp CCHHHHHHHHHHHTTGGG--SCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCC--ChHHHHHHHHCcCHHHHHHHHHHH
Confidence 555555433333322102 899999999999999999887653
No 90
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=83.91 E-value=1 Score=46.12 Aligned_cols=35 Identities=14% Similarity=0.284 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q 007404 548 QVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAF 586 (605)
Q Consensus 548 ~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RAL 586 (605)
.|..++|..+ +|.+|||+.||||+.|||..+..+.
T Consensus 12 ~ia~l~~~~~----~~~~ela~~l~vS~~tIrRdL~~l~ 46 (315)
T 2w48_A 12 KIAQLYYEQD----MTQAQIARELGIYRTTISRLLKRGR 46 (315)
T ss_dssp HHHHHHHTSC----CCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCC----CCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4666666544 9999999999999999996655543
No 91
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=83.85 E-value=4.2 Score=34.44 Aligned_cols=50 Identities=10% Similarity=0.227 Sum_probs=34.2
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 534 DLEKVLDTLN-PRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 534 ~L~~aL~~L~-~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
.+..++..|. +....||.+-. ++ ++|..|||+.+|+|+.+|+ +.+++|++
T Consensus 15 ~~~~~~~~l~~~~r~~IL~~L~--~~--~~~~~ela~~l~is~stvs----~~L~~L~~ 65 (106)
T 1r1u_A 15 RVTEIFKALGDYNRIRIMELLS--VS--EASVGHISHQLNLSQSNVS----HQLKLLKS 65 (106)
T ss_dssp HHHHHHHHTCSHHHHHHHHHHH--HC--CBCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHH--hC--CCCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 4555566666 44455666543 22 3899999999999999999 44555553
No 92
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=83.10 E-value=3.6 Score=35.82 Aligned_cols=55 Identities=16% Similarity=0.219 Sum_probs=39.3
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 531 MKEDLEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 531 l~~~L~~aL~--~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
+...+...+. .|++.|..||..-+..+ .+.|..|||+.+|+|+.+|. +.+++|-+
T Consensus 22 ~~~~~~~~~~~~~l~~~~~~iL~~l~~~~--~~~t~~~la~~l~~s~~~vs----~~l~~L~~ 78 (146)
T 2fbh_A 22 WRAELDRRLSHLGLSQARWLVLLHLARHR--DSPTQRELAQSVGVEGPTLA----RLLDGLES 78 (146)
T ss_dssp HHHHHHHHTGGGCCTTTHHHHHHHHHHCS--SCCBHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHcC--CCCCHHHHHHHhCCChhhHH----HHHHHHHH
Confidence 3344555554 48999988887763333 35999999999999999999 45555543
No 93
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=82.75 E-value=3.7 Score=38.36 Aligned_cols=55 Identities=22% Similarity=0.306 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 007404 531 MKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 590 (605)
Q Consensus 531 l~~~L~~aL~~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR 590 (605)
+...+...+..|++.|..||..-+... +.+.|..+||+.+|+++.+|.. .+++|-
T Consensus 28 ~~~~~~~~~~~lt~~q~~vL~~L~~~~-~~~~t~~eLa~~l~is~~tvs~----~l~~Le 82 (189)
T 3nqo_A 28 IQIEGDKYFGILTSRQYMTILSILHLP-EEETTLNNIARKMGTSKQNINR----LVANLE 82 (189)
T ss_dssp HHHHHHHHHCSSCHHHHHHHHHHHHSC-GGGCCHHHHHHHHTSCHHHHHH----HHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHhcc-CCCcCHHHHHHHHCCCHHHHHH----HHHHHH
Confidence 344555666679999999998766421 2349999999999999999994 455554
No 94
>3sqn_A Conserved domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MGA family; 2.31A {Enterococcus faecalis}
Probab=82.72 E-value=1.5 Score=47.80 Aligned_cols=107 Identities=12% Similarity=0.143 Sum_probs=57.3
Q ss_pred CCCCCHHHHHHhcCCCHHHHHHHHhCCCCC----CCccccccccCCCCCCcccCCCCCCCHHHHHHHHHHHHHHHHHHhc
Q 007404 466 GRHPNNEEVAEATGLSMKRLHAVLLSPKAP----RSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDT 541 (605)
Q Consensus 466 gr~PT~eEIAe~lgis~e~V~~~l~~~~~~----~SLD~~i~~d~~~~l~d~l~D~~~~spEe~l~~~el~~~L~~aL~~ 541 (605)
+..-|..+||+.+|+|...|+.-+..-+.. ..+..+ ..+. .+..+......+ + ...
T Consensus 30 ~~~it~~eLA~~L~VS~RTIr~dI~~In~~L~~~~~I~~~---~~Gy----~L~~~~~~~~~~----------~---~~~ 89 (485)
T 3sqn_A 30 VPQLTAKRLAAQIQTTERTVFSDLQYIRSQLPADWSIETD---SSGI----RLRNQGNAQTNE----------L---WSL 89 (485)
T ss_dssp CCSCBCGGGHHHHTSCHHHHHHHHHHHHTTCCTTEEEEEE---TTEE----EEEEC---CTHH----------H---HHH
T ss_pred CCCcCHHHHHHHhCCCHHHHHHHHHHHHHhcccCcEEEEc---CCEE----EEecCcHHHHHH----------H---HHh
Confidence 344789999999999999998776422111 111110 1111 111110000000 1 122
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHhhhh
Q 007404 542 LNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKH 597 (605)
Q Consensus 542 L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~~~ 597 (605)
+++.+|....+.+.+.+ ++.|+.++|+.|.||+.||.+- ++++++.+...+
T Consensus 90 ~~~~eR~~~Il~~LL~~-~~isi~~Lae~l~VS~sTi~~D----Lk~i~~~L~~y~ 140 (485)
T 3sqn_A 90 FLPQSISIQLLKELLFT-KELVTTSFLSTSGVSYETLKRH----IKKMNQALRDFH 140 (485)
T ss_dssp HGGGSHHHHHHHHHHHC-SEEEHHHHHHHHTCCHHHHHHH----HHHHHHHHGGGT
T ss_pred cCHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHHHH----HHHHHHHHHHCC
Confidence 34444543333333322 3699999999999999999954 555555554433
No 95
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=82.47 E-value=5.3 Score=36.74 Aligned_cols=49 Identities=24% Similarity=0.265 Sum_probs=34.3
Q ss_pred hcCCHHHHHHHHHHHhcC-CC---------CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhH
Q 007404 540 DTLNPRERQVVRWRFGLE-DG---------RMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 592 (605)
Q Consensus 540 ~~L~~rER~VL~LRyGl~-dg---------~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 592 (605)
...+.++|-.-.+..... .+ -++|.++||..+|+|+++|. |++++|++.
T Consensus 136 ~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~iA~~lg~sr~tvs----R~l~~L~~~ 194 (210)
T 3ryp_A 136 AFLDVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVG----RILKMLEDQ 194 (210)
T ss_dssp HHSCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHH----HHHHHHHHT
T ss_pred hhCCHHHHHHHHHHHHHHhcCcCCCCCceEeccCHHHHHHHhCCcHHHHH----HHHHHHHHC
Confidence 456777776443332211 11 25899999999999999999 888888863
No 96
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=82.24 E-value=4.7 Score=34.78 Aligned_cols=54 Identities=13% Similarity=0.148 Sum_probs=39.4
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 531 MKEDLEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 531 l~~~L~~aL~--~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
+...+...+. .|++.+..||..-+.. .+.|..|||+.+|+|+.+|. +.+++|.+
T Consensus 14 ~~~~~~~~~~~~~l~~~~~~iL~~l~~~---~~~~~~ela~~l~~s~~tvs----~~l~~L~~ 69 (138)
T 3bpv_A 14 HRVFIGRELGHLNLTDAQVACLLRIHRE---PGIKQDELATFFHVDKGTIA----RTLRRLEE 69 (138)
T ss_dssp HHHHHHHHSGGGTCCHHHHHHHHHHHHS---TTCBHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHc---CCCCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 3344555554 5899999988776643 24899999999999999999 45555543
No 97
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=82.12 E-value=4.5 Score=35.71 Aligned_cols=51 Identities=16% Similarity=0.156 Sum_probs=37.6
Q ss_pred HHHHHHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHH
Q 007404 530 FMKEDLEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIE 582 (605)
Q Consensus 530 el~~~L~~aL~--~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie 582 (605)
.+...+...+. .|++.|..||..-+..+ .+.|..|||+.+|+++.+|..++
T Consensus 23 ~~~~~~~~~l~~~glt~~q~~vL~~l~~~~--~~~t~~eLa~~l~i~~~tvs~~l 75 (150)
T 3fm5_A 23 MVLGAVNKALVPTGLRVRSYSVLVLACEQA--EGVNQRGVAATMGLDPSQIVGLV 75 (150)
T ss_dssp HHHHHHHHHHGGGTCCHHHHHHHHHHHHST--TCCCSHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHhCC--CCcCHHHHHHHHCCCHhHHHHHH
Confidence 34455555554 49999998888655332 34899999999999999999443
No 98
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=82.03 E-value=4.7 Score=34.83 Aligned_cols=44 Identities=7% Similarity=0.092 Sum_probs=35.0
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 541 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
.|++.+..||..-+..+ +.|..|||+.+|+|+.+|. +.+++|.+
T Consensus 28 ~l~~~~~~iL~~l~~~~---~~~~~ela~~l~is~~~vs----~~l~~L~~ 71 (142)
T 3bdd_A 28 GISLTRYSILQTLLKDA---PLHQLALQERLQIDRAAVT----RHLKLLEE 71 (142)
T ss_dssp SSCHHHHHHHHHHHHHC---SBCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCC---CCCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 69999998888765433 4999999999999999999 45555544
No 99
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=81.88 E-value=1.5 Score=36.55 Aligned_cols=42 Identities=10% Similarity=0.030 Sum_probs=32.5
Q ss_pred cCCHHHHHHHHHHHhc-CCCCCCCHHHHHHHHCCCHHHHHHHH
Q 007404 541 TLNPRERQVVRWRFGL-EDGRMKTLQEIGELMGVSRERIRQIE 582 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl-~dg~~~Tl~EIAe~LGISrerVRqie 582 (605)
.|+.++..||...+.. ++|.+.|..|||+.+|+++.+|.+++
T Consensus 9 ~l~~~~~~iL~~l~~~~~~~~~~t~~eLa~~l~i~~~tvs~~l 51 (95)
T 2qvo_A 9 LFKEKALEILMTIYYESLGGNDVYIQYIASKVNSPHSYVWLII 51 (95)
T ss_dssp HSCHHHHHHHHHHHHHHHTTCCEEHHHHHHHSSSCHHHHHHHH
T ss_pred CCchhHHHHHHHHHHccCCCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 4788888888766543 33455899999999999999999443
No 100
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=81.80 E-value=5.1 Score=34.60 Aligned_cols=51 Identities=12% Similarity=0.051 Sum_probs=38.3
Q ss_pred HHHHHHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 007404 530 FMKEDLEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES 583 (605)
Q Consensus 530 el~~~L~~aL~--~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~ 583 (605)
.+...+...+. .|++.|..||..-+..+ +.|..+||+.+|+++.+|.+++.
T Consensus 18 ~~~~~~~~~~~~~~lt~~~~~iL~~l~~~~---~~~~~~la~~l~~~~~tvs~~l~ 70 (138)
T 1jgs_A 18 KKDRLLNEYLSPLDITAAQFKVLCSIRCAA---CITPVELKKVLSVDLGALTRMLD 70 (138)
T ss_dssp HHHHHHHHHHTTTTSCHHHHHHHHHHHHHS---SBCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHhhhcCCCHHHHHHHHHHHhcC---CCCHHHHHHHHCCChHHHHHHHH
Confidence 34455666664 49999999888766433 38999999999999999995443
No 101
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=81.69 E-value=0.93 Score=41.31 Aligned_cols=40 Identities=18% Similarity=0.018 Sum_probs=29.2
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 007404 541 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~R 584 (605)
.++..+|.-|...+-.+ +|..+||+.||||+.||+.++.+
T Consensus 25 ~~s~e~r~~ii~l~~~G----~s~~~IA~~lgis~~TV~rwl~r 64 (159)
T 2k27_A 25 PLPEVVRQRIVDLAHQG----VRPCDISRQLRVSHGCVSKILGR 64 (159)
T ss_dssp SSCHHHHHHHHHHHHHT----CCHHHHHHHHTCCSHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHcC----CCHHHHHHHHCcCHHHHHHHHHH
Confidence 35555555444444444 89999999999999999988754
No 102
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=81.65 E-value=3.5 Score=35.62 Aligned_cols=53 Identities=11% Similarity=0.147 Sum_probs=38.7
Q ss_pred HHHHHHHHh-cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 532 KEDLEKVLD-TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 532 ~~~L~~aL~-~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
...+...+. .|++.|..||..-+..+ +.|..|||+.+|+++.+|. +.+++|-+
T Consensus 25 ~~~~~~~~~~~l~~~~~~iL~~l~~~~---~~t~~ela~~l~~~~~tvs----~~l~~L~~ 78 (140)
T 2nnn_A 25 AALFANGIGNGLTPTQWAALVRLGETG---PCPQNQLGRLTAMDAATIK----GVVERLDK 78 (140)
T ss_dssp HHHHHHHCSSCCCHHHHHHHHHHHHHS---SBCHHHHHHHTTCCHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHcC---CCCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 334444444 69999998887765433 4999999999999999999 45555543
No 103
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=81.63 E-value=3 Score=34.61 Aligned_cols=50 Identities=12% Similarity=0.148 Sum_probs=33.1
Q ss_pred HHHHHHhcCCH-HHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 534 DLEKVLDTLNP-RERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 534 ~L~~aL~~L~~-rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
.+..++..|.. ....||.+ ..+ .++|..|||+.+|+|+.+|+ +-|++|++
T Consensus 12 ~~~~~~~~l~~~~r~~Il~~--L~~--~~~~~~ela~~l~is~~tvs----~~L~~L~~ 62 (98)
T 3jth_A 12 KAVVLLKAMANERRLQILCM--LHN--QELSVGELCAKLQLSQSALS----QHLAWLRR 62 (98)
T ss_dssp HHHHHHHHHCSHHHHHHHHH--TTT--SCEEHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHH--Hhc--CCCCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 34555555554 44445543 222 35999999999999999998 55566654
No 104
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=81.60 E-value=5.4 Score=34.53 Aligned_cols=52 Identities=10% Similarity=0.205 Sum_probs=38.9
Q ss_pred HHHHHHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHH
Q 007404 530 FMKEDLEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIE 582 (605)
Q Consensus 530 el~~~L~~aL~--~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie 582 (605)
.+...+...+. .|++.|..||..-+..+ +.+.|..|||+.+|+++.+|..++
T Consensus 15 ~~~~~~~~~~~~~~lt~~~~~vL~~l~~~~-~~~~t~~ela~~l~~~~~tvs~~l 68 (139)
T 3eco_A 15 EMKQKADQKLEQFDITNEQGHTLGYLYAHQ-QDGLTQNDIAKALQRTGPTVSNLL 68 (139)
T ss_dssp HHHHHHHHHHGGGTCCHHHHHHHHHHHHST-TTCEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHhcC-CCCcCHHHHHHHhCCCcccHHHHH
Confidence 34455555554 49999999988766542 235999999999999999999443
No 105
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=81.58 E-value=6.1 Score=34.16 Aligned_cols=56 Identities=4% Similarity=0.122 Sum_probs=40.9
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 531 MKEDLEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 531 l~~~L~~aL~--~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
+...+...+. .|++.|..||..-+..+ +.+.|..|||+.+|+++.+|. +.+++|-+
T Consensus 19 ~~~~~~~~~~~~~lt~~~~~iL~~l~~~~-~~~~~~~ela~~l~~~~~tvs----~~l~~Le~ 76 (141)
T 3bro_A 19 MSTRFDIFAKKYDLTGTQMTIIDYLSRNK-NKEVLQRDLESEFSIKSSTAT----VLLQRMEI 76 (141)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHTT-TSCCBHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHCC-CCCcCHHHHHHHHCCCcchHH----HHHHHHHH
Confidence 3444555554 58999999888766543 336999999999999999998 45555544
No 106
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=81.56 E-value=5.4 Score=35.32 Aligned_cols=48 Identities=19% Similarity=0.191 Sum_probs=36.0
Q ss_pred HHHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 007404 533 EDLEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES 583 (605)
Q Consensus 533 ~~L~~aL~--~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~ 583 (605)
..+...+. .|++.|..||..-+..+ +.|..|||+.+|+++.+|.+++.
T Consensus 28 ~~~~~~~~~~~lt~~q~~iL~~l~~~~---~~~~~eLa~~l~~~~~~vs~~l~ 77 (149)
T 4hbl_A 28 QFYEKKLKQFGITYSQYLVMLTLWEEN---PQTLNSIGRHLDLSSNTLTPMLK 77 (149)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHSS---SEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCC---CCCHHHHHHHHCCCHHHHHHHHH
Confidence 33444443 59999999888766443 48999999999999999994443
No 107
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=81.39 E-value=5.8 Score=35.32 Aligned_cols=50 Identities=10% Similarity=0.114 Sum_probs=37.3
Q ss_pred HHHHHHHHH---hcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 007404 531 MKEDLEKVL---DTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES 583 (605)
Q Consensus 531 l~~~L~~aL---~~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~ 583 (605)
+...+...+ ..|++.|..||..-+..+ +.|..|||+.+|+++.+|.+++.
T Consensus 33 ~~~~~~~~l~~~~~lt~~~~~iL~~l~~~~---~~t~~ela~~l~is~~tvs~~l~ 85 (162)
T 2fa5_A 33 ISGNIAKVYGDRYGMAIPEWRVITILALYP---GSSASEVSDRTAMDKVAVSRAVA 85 (162)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHST---TCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHhCC---CCCHHHHHHHHCCCHHHHHHHHH
Confidence 334455555 369999999988766432 49999999999999999995443
No 108
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=81.37 E-value=2.3 Score=39.66 Aligned_cols=45 Identities=22% Similarity=0.302 Sum_probs=33.1
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 540 DTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 540 ~~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
..|++.++.||.+-.. ++ ..|+.|||+.+|+|+.+|+ +-+++|.+
T Consensus 13 ~~ld~~d~~IL~~L~~--~~-~~s~~eLA~~lglS~~tv~----~~l~~L~~ 57 (171)
T 2ia0_A 13 IHLDDLDRNILRLLKK--DA-RLTISELSEQLKKPESTIH----FRIKKLQE 57 (171)
T ss_dssp -CCCHHHHHHHHHHHH--CT-TCCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH--cC-CCCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 3578888888876432 22 4899999999999999999 44455543
No 109
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=81.31 E-value=3.1 Score=33.51 Aligned_cols=46 Identities=2% Similarity=0.087 Sum_probs=34.7
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHh
Q 007404 541 TLNPRERQVVRWRFGLEDGRMKTLQEIGELM-----GVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~L-----GISrerVRqie~RALkKLR~ 591 (605)
.++++...||.+-... ++.+.|..||++.+ +||..||+ |.|+.|.+
T Consensus 14 ~~t~~r~~IL~~l~~~-~~~~~s~~el~~~l~~~~~~is~~TVy----R~L~~L~~ 64 (83)
T 2fu4_A 14 KVTLPRLKILEVLQEP-DNHHVSAEDLYKRLIDMGEEIGLATVY----RVLNQFDD 64 (83)
T ss_dssp CCCHHHHHHHHHHTSG-GGSSBCHHHHHHHHHHTTCCCCHHHHH----HHHHHHHH
T ss_pred CcCHHHHHHHHHHHhC-CCCCCCHHHHHHHHHHhCCCCCHhhHH----HHHHHHHH
Confidence 4788887787754322 11469999999999 99999999 66666655
No 110
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=81.12 E-value=5.3 Score=35.02 Aligned_cols=48 Identities=15% Similarity=0.243 Sum_probs=36.5
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHH
Q 007404 532 KEDLEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIE 582 (605)
Q Consensus 532 ~~~L~~aL~--~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie 582 (605)
...+...+. .|++.|..||..-+..+ +.|..|||+.+|+++.+|.+++
T Consensus 28 ~~~~~~~~~~~~l~~~~~~iL~~l~~~~---~~t~~ela~~l~~~~~tvs~~l 77 (150)
T 2rdp_A 28 KQRGREILTNYPITPPQFVALQWLLEEG---DLTVGELSNKMYLACSTTTDLV 77 (150)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHHC---SBCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHcC---CCCHHHHHHHHCCCchhHHHHH
Confidence 344555554 58999998887765432 4999999999999999999544
No 111
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=80.69 E-value=4.9 Score=34.93 Aligned_cols=63 Identities=16% Similarity=0.239 Sum_probs=44.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcC-CCCCCCHHHHHHHHCCCHHHHHHHHHH----HHHHHHhHHh
Q 007404 532 KEDLEKVLDTLNPRERQVVRWRFGLE-DGRMKTLQEIGELMGVSRERIRQIESS----AFRKLKNKKR 594 (605)
Q Consensus 532 ~~~L~~aL~~L~~rER~VL~LRyGl~-dg~~~Tl~EIAe~LGISrerVRqie~R----ALkKLR~~l~ 594 (605)
...|...+..|++.|+.|...-.-.. .-..+|..|||+..|+|..+|-..-++ ...-||..+.
T Consensus 5 ~~~I~~~~~~lt~~e~~ia~yil~~~~~~~~~si~elA~~~~vS~aTv~Rf~kkLGf~gf~efk~~l~ 72 (107)
T 3iwf_A 5 LYKIDNQYPYFTKNEKKIAQFILNYPHKVVNMTSQEIANQLETSSTSIIRLSKKVTPGGFNELKTRLS 72 (107)
T ss_dssp HHHHHHHGGGSCHHHHHHHHHHHHCHHHHTTCCHHHHHHHHTSCHHHHHHHHHHHSTTHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHhCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45677888999999999986543221 013499999999999999999854433 4444554443
No 112
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=80.35 E-value=5.4 Score=34.70 Aligned_cols=51 Identities=22% Similarity=0.242 Sum_probs=37.6
Q ss_pred HHHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 533 EDLEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 533 ~~L~~aL~--~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
..+...+. .|++.|..||..-+ + .+.|..|||+.+|+|+.+|. +.+++|.+
T Consensus 24 ~~~~~~~~~~~l~~~~~~iL~~l~--~--~~~~~~ela~~l~~s~~tvs----~~l~~Le~ 76 (146)
T 2gxg_A 24 RELNRRLGELNLSYLDFLVLRATS--D--GPKTMAYLANRYFVTQSAIT----ASVDKLEE 76 (146)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHT--T--SCBCHHHHHHHTTCCHHHHH----HHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHh--c--CCcCHHHHHHHhCCCchhHH----HHHHHHHH
Confidence 33444453 49999999887765 2 24999999999999999999 45555543
No 113
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=80.33 E-value=4.1 Score=35.62 Aligned_cols=49 Identities=16% Similarity=0.108 Sum_probs=36.8
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHH
Q 007404 531 MKEDLEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIE 582 (605)
Q Consensus 531 l~~~L~~aL~--~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie 582 (605)
+...+...+. .|++.|..||..-+..+ +.|..|||+.+|+++.+|.+++
T Consensus 22 ~~~~~~~~~~~~~lt~~~~~iL~~l~~~~---~~t~~eLa~~l~~~~~~vs~~l 72 (143)
T 3oop_A 22 MHLFLMRSIASYDVTPEQWSVLEGIEANE---PISQKEIALWTKKDTPTVNRIV 72 (143)
T ss_dssp HHHHHHHHTTTSSSCHHHHHHHHHHHHHS---SEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHhhhCCCCHHHHHHHHHHHHcC---CcCHHHHHHHHCCCHhhHHHHH
Confidence 3344455554 48999999988766443 4899999999999999999443
No 114
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=80.28 E-value=5.5 Score=35.17 Aligned_cols=46 Identities=2% Similarity=-0.010 Sum_probs=35.2
Q ss_pred HHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHH
Q 007404 534 DLEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIE 582 (605)
Q Consensus 534 ~L~~aL~--~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie 582 (605)
.+...+. .|++.|..||..-+..+ +.|..|||+.+|+++.+|.+++
T Consensus 29 ~~~~~~~~~~lt~~~~~iL~~l~~~~---~~t~~eLa~~l~~~~~tvs~~l 76 (154)
T 2qww_A 29 YADQNAASLGLTIQQLAMINVIYSTP---GISVADLTKRLIITGSSAAANV 76 (154)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHST---TEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHCC---CCCHHHHHHHHCCCHHHHHHHH
Confidence 3444443 59999999988766432 4999999999999999999443
No 115
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=79.66 E-value=5.7 Score=34.87 Aligned_cols=52 Identities=12% Similarity=0.132 Sum_probs=38.2
Q ss_pred HHHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 533 EDLEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 533 ~~L~~aL~--~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
..+...+. .|++.+..||..-+..+ +.|..+||+.+|+++.+|. +.+++|-+
T Consensus 27 ~~~~~~~~~~~lt~~~~~iL~~l~~~~---~~t~~ela~~l~~~~~~vs----~~l~~Le~ 80 (152)
T 3bj6_A 27 AAVERGTLREGVTVGQRAILEGLSLTP---GATAPQLGAALQMKRQYIS----RILQEVQR 80 (152)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHST---TEEHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhCC---CCCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 34444443 59999998888765433 4999999999999999999 45555543
No 116
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=79.58 E-value=4.4 Score=35.74 Aligned_cols=52 Identities=15% Similarity=0.162 Sum_probs=38.3
Q ss_pred HHHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 533 EDLEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 533 ~~L~~aL~--~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
..+...+. .|++.+..||..-+..+ +.|..+||+.+|+|+.+|. +.+++|-+
T Consensus 24 ~~~~~~~~~~~l~~~~~~iL~~l~~~~---~~t~~ela~~l~~s~~tvs----~~l~~Le~ 77 (155)
T 1s3j_A 24 PEMLESMEKQGVTPAQLFVLASLKKHG---SLKVSEIAERMEVKPSAVT----LMADRLEQ 77 (155)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHS---EEEHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHcC---CCCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 34444443 69999999887765432 4899999999999999999 45555543
No 117
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=79.47 E-value=5 Score=35.48 Aligned_cols=50 Identities=16% Similarity=0.213 Sum_probs=36.8
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 007404 531 MKEDLEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES 583 (605)
Q Consensus 531 l~~~L~~aL~--~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~ 583 (605)
+...+...+. .|++.|..||..-+..+ +.|..|||+.+|+|+.+|.+++.
T Consensus 32 ~~~~~~~~~~~~~l~~~~~~iL~~l~~~~---~~t~~ela~~l~~s~~tvs~~l~ 83 (153)
T 2pex_A 32 MHKLYRGLLKALDLTYPQYLVMLVLWETD---ERSVSEIGERLYLDSATLTPLLK 83 (153)
T ss_dssp HHHHHHHHTTTTTCCHHHHHHHHHHHHSC---SEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHhCC---CcCHHHHHHHhCCCcccHHHHHH
Confidence 3444455553 58999988887765432 48999999999999999995443
No 118
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=79.46 E-value=3.7 Score=34.38 Aligned_cols=50 Identities=20% Similarity=0.359 Sum_probs=33.0
Q ss_pred HHHHHHhcCCHHHH-HHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 534 DLEKVLDTLNPRER-QVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 534 ~L~~aL~~L~~rER-~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
.+..++..|...-| .||.+- .+ | ++|..||++.+|+|+.+|+ +.|++|++
T Consensus 12 ~~~~~~~~l~~~~r~~Il~~L--~~-~-~~~~~ela~~l~is~~tvs----~~L~~L~~ 62 (102)
T 3pqk_A 12 EVANLLKTLSHPVRLMLVCTL--VE-G-EFSVGELEQQIGIGQPTLS----QQLGVLRE 62 (102)
T ss_dssp HHHHHHHHHCSHHHHHHHHHH--HT-C-CBCHHHHHHHHTCCTTHHH----HHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHH--Hh-C-CCCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 34555666654444 444433 23 2 4999999999999999999 45555554
No 119
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=79.40 E-value=5 Score=36.46 Aligned_cols=53 Identities=9% Similarity=0.056 Sum_probs=38.9
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 532 KEDLEKVLD----TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 532 ~~~L~~aL~----~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
...+...+. .|++.|..||..-+..+ +.|..|||+.+|+++.+|.+ .+++|.+
T Consensus 29 ~~~~~~~l~~~~~~lt~~~~~iL~~L~~~~---~~t~~eLa~~l~is~~tvs~----~l~~Le~ 85 (168)
T 2nyx_A 29 VAISAHSIAQVDENITIPQFRTLVILSNHG---PINLATLATLLGVQPSATGR----MVDRLVG 85 (168)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHHHC---SEEHHHHHHHHTSCHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHcC---CCCHHHHHHHhCCCHHHHHH----HHHHHHH
Confidence 334445554 69999999988765433 49999999999999999994 4555543
No 120
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=79.38 E-value=2.2 Score=36.50 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 007404 544 PRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 544 ~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~R 584 (605)
+|...|+.+....+ .|+.+||+.+|||..||+..+..
T Consensus 7 ~R~~~I~~~l~~~~----~ti~dlA~~~gVS~~TVsR~L~~ 43 (93)
T 2l0k_A 7 ERTIKIGKYIVETK----KTVRVIAKEFGVSKSTVHKDLTE 43 (93)
T ss_dssp HHHHHHHHHHHHHC----CCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcC----CCHHHHHHHHCCCHHHHHHHHcC
Confidence 34555665544333 89999999999999999977764
No 121
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=79.27 E-value=4 Score=36.47 Aligned_cols=44 Identities=11% Similarity=0.127 Sum_probs=34.7
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 541 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
.|++.|..||..-+..+ +.|..|||+.+|+++.+|. +.+++|.+
T Consensus 49 ~lt~~~~~iL~~l~~~~---~~t~~ela~~l~is~~tvs----~~l~~Le~ 92 (162)
T 3cjn_A 49 GLSTAKMRALAILSAKD---GLPIGTLGIFAVVEQSTLS----RALDGLQA 92 (162)
T ss_dssp TCCHHHHHHHHHHHHSC---SEEHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCC---CCCHHHHHHHHCCChhHHH----HHHHHHHH
Confidence 49999999988766432 4899999999999999999 44555543
No 122
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=79.26 E-value=5.4 Score=35.35 Aligned_cols=49 Identities=12% Similarity=0.161 Sum_probs=36.0
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHH
Q 007404 531 MKEDLEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIE 582 (605)
Q Consensus 531 l~~~L~~aL~--~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie 582 (605)
+...+...+. .|++.+..||..-+.. .+.|..|||+.+|+++.+|..++
T Consensus 28 ~~~~~~~~l~~~~lt~~~~~iL~~l~~~---~~~t~~ela~~l~i~~~tvs~~l 78 (155)
T 3cdh_A 28 ASAQFHDHIRAQGLRVPEWRVLACLVDN---DAMMITRLAKLSLMEQSRMTRIV 78 (155)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHSSC---SCBCHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHC---CCcCHHHHHHHHCCCHHHHHHHH
Confidence 3344555553 5999998888765432 25999999999999999999443
No 123
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=79.17 E-value=8.1 Score=35.38 Aligned_cols=27 Identities=37% Similarity=0.578 Sum_probs=24.4
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 561 MKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 561 ~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
+.|.++||..+|+|+++|. |++++|++
T Consensus 164 ~~t~~~lA~~lg~sr~tvs----R~l~~l~~ 190 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVG----RVLKSLEE 190 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred ccCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 5899999999999999999 78888876
No 124
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=79.10 E-value=4.3 Score=36.27 Aligned_cols=51 Identities=2% Similarity=0.080 Sum_probs=38.2
Q ss_pred HHHHHHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 007404 530 FMKEDLEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES 583 (605)
Q Consensus 530 el~~~L~~aL~--~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~ 583 (605)
.+...+...+. .|++.|..||..-+..+ +.|..|||+.+|+++.+|..++.
T Consensus 34 ~~~~~~~~~l~~~~lt~~q~~vL~~l~~~~---~~t~~eLa~~l~~~~~tvs~~l~ 86 (159)
T 3s2w_A 34 YGQIYIGKKIEPYGIGSGQFPFLMRLYRED---GINQESLSDYLKIDKGTTARAIQ 86 (159)
T ss_dssp HHHHHHHHHHGGGTCCTTTHHHHHHHHHSC---SEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHCC---CCCHHHHHHHHCCCHHHHHHHHH
Confidence 34455556664 49999999888765443 48999999999999999994443
No 125
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=79.08 E-value=1.5 Score=36.13 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=19.9
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHH
Q 007404 559 GRMKTLQEIGELMGVSRERIRQI 581 (605)
Q Consensus 559 g~~~Tl~EIAe~LGISrerVRqi 581 (605)
|.|.|..|||+.||||..+||..
T Consensus 22 g~~psv~EIa~~lgvS~~TVrr~ 44 (77)
T 2jt1_A 22 GAPVKTRDIADAAGLSIYQVRLY 44 (77)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCHHHHHHH
Confidence 34689999999999999999943
No 126
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=79.03 E-value=5 Score=33.84 Aligned_cols=49 Identities=16% Similarity=0.213 Sum_probs=33.1
Q ss_pred HHHHHhcCC-HHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 535 LEKVLDTLN-PRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 535 L~~aL~~L~-~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
+..++..|. +....||.+- .++ +.|..|||+.+|+|+.+|+ +.+++|.+
T Consensus 11 ~~~~~~~l~~~~r~~IL~~L--~~~--~~~~~ela~~l~is~~tv~----~~l~~L~~ 60 (114)
T 2oqg_A 11 LASVFAALSDETRWEILTEL--GRA--DQSASSLATRLPVSRQAIA----KHLNALQA 60 (114)
T ss_dssp HHHHHHHTTCHHHHHHHHHH--HHS--CBCHHHHHHHSSSCHHHHH----HHHHHHHH
T ss_pred HHHHHHHhCChHHHHHHHHH--HcC--CCCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 445555555 4555566543 222 3899999999999999999 45555543
No 127
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=78.98 E-value=3.1 Score=36.39 Aligned_cols=43 Identities=19% Similarity=0.282 Sum_probs=32.3
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 541 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
.|++.|..||..-+ .++ .|..|||+.+|+|+.+|+ +.+++|.+
T Consensus 35 ~lt~~~~~iL~~l~--~~~--~t~~eLa~~l~~s~~tvs----~~l~~L~~ 77 (146)
T 3tgn_A 35 ALTNTQEHILMLLS--EES--LTNSELARRLNVSQAAVT----KAIKSLVK 77 (146)
T ss_dssp CCCHHHHHHHHHHT--TCC--CCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCHHHHHHHHHHH--hCC--CCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 46778877776543 223 999999999999999999 45555543
No 128
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=78.88 E-value=4.7 Score=34.56 Aligned_cols=49 Identities=14% Similarity=0.296 Sum_probs=33.9
Q ss_pred HHHHHhc-CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 535 LEKVLDT-LNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 535 L~~aL~~-L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
+..++.. .++.+..||.+-.. + +.|+.|||+.+|+|+.+|. +.+++|.+
T Consensus 22 ~~~~~~~l~~~~~~~il~~L~~-~---~~s~~ela~~l~is~stvs----r~l~~Le~ 71 (119)
T 2lkp_A 22 VASTLQALATPSRLMILTQLRN-G---PLPVTDLAEAIGMEQSAVS----HQLRVLRN 71 (119)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHH-C---CCCHHHHHHHHSSCHHHHH----HHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHH-C---CCCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 3344443 34666677766543 2 3899999999999999999 45555554
No 129
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=78.85 E-value=6.8 Score=36.78 Aligned_cols=49 Identities=16% Similarity=0.243 Sum_probs=35.7
Q ss_pred HhcCCHHHHHHHHH-----HHhc-CC----CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 539 LDTLNPRERQVVRW-----RFGL-ED----GRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 539 L~~L~~rER~VL~L-----RyGl-~d----g~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
+...+..+|-.-.+ +||. ++ .-+.|.++||..+|+|+++|. |++++|++
T Consensus 148 l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvs----R~l~~l~~ 206 (232)
T 2gau_A 148 LTQKHVRGRLAETLLILKENFGFENDGATLSIYLSREELATLSNMTVSNAI----RTLSTFVS 206 (232)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHCBCTTSSBBSCCCCHHHHHHHTTSCHHHHH----HHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHcCCCCCCcEEEcccCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 45678888765444 4442 01 136899999999999999998 78888876
No 130
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=78.84 E-value=3.1 Score=35.63 Aligned_cols=49 Identities=16% Similarity=0.261 Sum_probs=32.2
Q ss_pred HHHHHhcCCH-HHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 535 LEKVLDTLNP-RERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 535 L~~aL~~L~~-rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
+..++..|.. ....||.+-. + .+.|..|||+.+|+|+.+|+ +.+++|++
T Consensus 15 ~~~~~~al~~~~r~~IL~~L~--~--~~~s~~eLa~~lgis~stvs----~~L~~L~~ 64 (108)
T 2kko_A 15 VARVGKALANGRRLQILDLLA--Q--GERAVEAIATATGMNLTTAS----ANLQALKS 64 (108)
T ss_dssp HHHHHHHHTTSTTHHHHHHHT--T--CCEEHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHH--c--CCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 3444444443 3345665432 2 24899999999999999999 55666654
No 131
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=78.75 E-value=3.2 Score=34.22 Aligned_cols=29 Identities=14% Similarity=0.321 Sum_probs=22.0
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 559 GRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 559 g~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
|+..|..+||..||+|+..|. |+|.+|.+
T Consensus 27 ~~~~Ta~~IAkkLg~sK~~vN----r~LY~L~k 55 (75)
T 1sfu_A 27 NDYTTAISLSNRLKINKKKIN----QQLYKLQK 55 (75)
T ss_dssp TCEECHHHHHHHTTCCHHHHH----HHHHHHHH
T ss_pred CcchHHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 334899999999999998877 55555543
No 132
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=78.73 E-value=6.4 Score=34.40 Aligned_cols=53 Identities=17% Similarity=0.155 Sum_probs=39.0
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 532 KEDLEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 532 ~~~L~~aL~--~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
...+...+. .|++.|..||..-+..+ +.|..|||+.+|+++.+|. +.+++|-+
T Consensus 17 ~~~~~~~~~~~~lt~~q~~iL~~l~~~~---~~t~~eLa~~l~~~~~tvs----~~l~~Le~ 71 (145)
T 3g3z_A 17 CNVFDKWIGQQDLNYNLFAVLYTLATEG---SRTQKHIGEKWSLPKQTVS----GVCKTLAG 71 (145)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHC---SBCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHCC---CCCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 344455553 58999999888765443 3999999999999999999 44555543
No 133
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=78.61 E-value=4.3 Score=35.56 Aligned_cols=49 Identities=10% Similarity=0.074 Sum_probs=36.4
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHH
Q 007404 531 MKEDLEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIE 582 (605)
Q Consensus 531 l~~~L~~aL~--~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie 582 (605)
+...+...+. .|++.|..||..-+. ..+.|..|||+.+|+++.+|..++
T Consensus 21 ~~~~~~~~~~~~glt~~q~~vL~~l~~---~~~~t~~eLa~~l~~~~~tvs~~l 71 (140)
T 3hsr_A 21 IIKKYTNYLKEYDLTYTGYIVLMAIEN---DEKLNIKKLGERVFLDSGTLTPLL 71 (140)
T ss_dssp HHHHHHHHHGGGTCCHHHHHHHHHSCT---TCEEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHH---cCCcCHHHHHHHHCCChhhHHHHH
Confidence 3444555554 599999888876543 335999999999999999999443
No 134
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=78.33 E-value=3.2 Score=37.01 Aligned_cols=49 Identities=12% Similarity=0.070 Sum_probs=36.6
Q ss_pred HHHHHHHHh---cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHH
Q 007404 532 KEDLEKVLD---TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIE 582 (605)
Q Consensus 532 ~~~L~~aL~---~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie 582 (605)
...+...+. .|++.|..||..-+..++ +.|..|||+.+|+++.+|.+++
T Consensus 32 ~~~~~~~l~~~~~l~~~~~~iL~~L~~~~~--~~~~~ela~~l~i~~~tvs~~l 83 (160)
T 3boq_A 32 FGDLNRQLLDETGLSLAKFDAMAQLARNPD--GLSMGKLSGALKVTNGNVSGLV 83 (160)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHCTT--CEEHHHHHHHCSSCCSCHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHcCC--CCCHHHHHHHHCCChhhHHHHH
Confidence 344444443 599999999887654332 4999999999999999999444
No 135
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=78.30 E-value=4.9 Score=35.97 Aligned_cols=52 Identities=12% Similarity=0.098 Sum_probs=38.9
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 007404 531 MKEDLEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES 583 (605)
Q Consensus 531 l~~~L~~aL~--~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~ 583 (605)
+...+...|. .|+..|-.||.+-+... +.+.|..|||+.+|+++.+|..++.
T Consensus 20 l~~~~~~~l~~~gLt~~q~~vL~~L~~~~-~~~~t~~eLa~~l~~~~~tvs~~v~ 73 (147)
T 4b8x_A 20 LLGEVDAVVKPYGLTFARYEALVLLTFSK-SGELPMSKIGERLMVHPTSVTNTVD 73 (147)
T ss_dssp HHHHHHHHHGGGTCCHHHHHHHHHHHTSG-GGEEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHCC-CCCcCHHHHHHHHCCCHHHHHHHHH
Confidence 4455666665 49999999988766432 2358999999999999999995443
No 136
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=78.24 E-value=5 Score=34.90 Aligned_cols=54 Identities=15% Similarity=0.123 Sum_probs=39.3
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 531 MKEDLEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 531 l~~~L~~aL~--~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
+...+...+. .|++.+..||..-+..+ +.|..+||+.+|+|+.+|. +.+++|.+
T Consensus 14 ~~~~~~~~~~~~~lt~~~~~iL~~l~~~~---~~t~~~la~~l~~s~~~vs----~~l~~Le~ 69 (144)
T 1lj9_A 14 LDSISNIEFKELSLTRGQYLYLVRVCENP---GIIQEKIAELIKVDRTTAA----RAIKRLEE 69 (144)
T ss_dssp HHHHHHHHTGGGTCTTTHHHHHHHHHHST---TEEHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHCc---CcCHHHHHHHHCCCHhHHH----HHHHHHHH
Confidence 3444555554 58999988887765432 4899999999999999999 45555543
No 137
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=78.09 E-value=5.6 Score=36.22 Aligned_cols=55 Identities=9% Similarity=0.206 Sum_probs=39.4
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 531 MKEDLEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 531 l~~~L~~aL~--~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
+...+...+. .|++.|..||..-+..+ .+.|..|||+.+|+++.+|.. .+++|-+
T Consensus 38 ~~~~~~~~l~~~glt~~q~~vL~~L~~~~--~~~t~~eLa~~l~i~~~tvs~----~l~~Le~ 94 (166)
T 3deu_A 38 WRALIDHRLKPLELTQTHWVTLHNIHQLP--PDQSQIQLAKAIGIEQPSLVR----TLDQLED 94 (166)
T ss_dssp HHHHHHHHTTTTTCCHHHHHHHHHHHHSC--SSEEHHHHHHHHTSCHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHcC--CCCCHHHHHHHHCCCHhhHHH----HHHHHHH
Confidence 4444555553 58999988887765433 249999999999999999994 4555543
No 138
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=77.36 E-value=5.1 Score=37.15 Aligned_cols=49 Identities=16% Similarity=0.037 Sum_probs=33.5
Q ss_pred hcCCHHHHHHHHHHHhcC--C--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhH
Q 007404 540 DTLNPRERQVVRWRFGLE--D--GRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 592 (605)
Q Consensus 540 ~~L~~rER~VL~LRyGl~--d--g~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 592 (605)
...+.++|-.-.+....+ + .-+.|.++||..+|+|+++|. |.+++|++.
T Consensus 144 ~~~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvs----R~l~~L~~~ 196 (220)
T 3dv8_A 144 MWKSLDKRVASFLLEETSIEGTNELKITHETIANHLGSHREVIT----RMLRYFQVE 196 (220)
T ss_dssp HHSCHHHHHHHHHHHHHHHHTSSEECCCHHHHHHHHTCCHHHHH----HHHHHHHHT
T ss_pred hcCCHHHHHHHHHHHhhhhcCCceecCCHHHHHHHhCCCHHHHH----HHHHHHHHC
Confidence 356666665433322111 1 125899999999999999999 888888763
No 139
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=77.18 E-value=6 Score=35.52 Aligned_cols=50 Identities=8% Similarity=-0.001 Sum_probs=37.7
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 007404 531 MKEDLEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES 583 (605)
Q Consensus 531 l~~~L~~aL~--~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~ 583 (605)
+...+...+. .|++.|..||..-+..+ +.|..|||+.+|+++.+|..++.
T Consensus 31 ~~~~~~~~l~~~glt~~q~~iL~~l~~~~---~~t~~eLa~~l~~~~~tvs~~l~ 82 (162)
T 3k0l_A 31 ISKYLTEHLSALEISLPQFTALSVLAAKP---NLSNAKLAERSFIKPQSANKILQ 82 (162)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHCT---TCCHHHHHHHHTSCGGGHHHHHH
T ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHHCC---CCCHHHHHHHHCCCHHHHHHHHH
Confidence 4444555554 59999999988766443 49999999999999999994433
No 140
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=77.16 E-value=6.9 Score=35.13 Aligned_cols=54 Identities=17% Similarity=0.175 Sum_probs=35.9
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHHhcCC--CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 007404 531 MKEDLEKVLD--TLNPRERQVVRWRFGLED--GRMKTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 531 l~~~L~~aL~--~L~~rER~VL~LRyGl~d--g~~~Tl~EIAe~LGISrerVRqie~R 584 (605)
+...+...|. .|++.|-.||..-+..++ +.++|..|||+.+|+++.+|..++.+
T Consensus 18 ~~~~~~~~l~~~gLt~~q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~ 75 (148)
T 4fx0_A 18 LGQAYDRALRPSGLTNTQFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEV 75 (148)
T ss_dssp HHHHHHHHHGGGTCCHHHHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHH
Confidence 3344555564 499999988877654432 34689999999999999999955443
No 141
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=77.15 E-value=1.9 Score=35.78 Aligned_cols=36 Identities=8% Similarity=0.283 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHH-HHHHHHH
Q 007404 545 RERQVVRWRFGLEDGRMKTLQEIGELMGVSRE-RIRQIES 583 (605)
Q Consensus 545 rER~VL~LRyGl~dg~~~Tl~EIAe~LGISre-rVRqie~ 583 (605)
....||.+-.-.+ +.|..+||+.||||.. .||+++.
T Consensus 12 ~~~~IL~~Lk~~g---~~ta~eiA~~Lgit~~~aVr~hL~ 48 (79)
T 1xmk_A 12 IKEKICDYLFNVS---DSSALNLAKNIGLTKARDINAVLI 48 (79)
T ss_dssp HHHHHHHHHHHTC---CEEHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHcC---CcCHHHHHHHcCCCcHHHHHHHHH
Confidence 3445665544433 4899999999999999 9996554
No 142
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=77.10 E-value=8.3 Score=35.36 Aligned_cols=50 Identities=20% Similarity=0.160 Sum_probs=35.2
Q ss_pred HhcCCHHHHHHHHHHHhc-CCC---------CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhH
Q 007404 539 LDTLNPRERQVVRWRFGL-EDG---------RMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 592 (605)
Q Consensus 539 L~~L~~rER~VL~LRyGl-~dg---------~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 592 (605)
+...+..+|-.-.+.... ..| -++|.++||..+|+|+++|. |++++|++.
T Consensus 107 l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvs----R~l~~L~~~ 166 (195)
T 3b02_A 107 LQTGELRARIARYLLFLADTPLSARDRQGIYVTVSHEEIADATASIRESVS----KVLADLRRE 166 (195)
T ss_dssp HTSSCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHTTTSCHHHHH----HHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHcCCCCCCCeeeccCCHHHHHHHhCCCHHHHH----HHHHHHHHC
Confidence 456778887654333211 111 25899999999999999999 888888764
No 143
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=77.02 E-value=4.4 Score=35.57 Aligned_cols=40 Identities=10% Similarity=0.234 Sum_probs=32.2
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 007404 541 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES 583 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~ 583 (605)
.|++.|..||..-+..+ +.|..|||+.+|+++.+|.+++.
T Consensus 37 ~l~~~~~~iL~~l~~~~---~~t~~ela~~l~~~~~tvs~~l~ 76 (148)
T 3nrv_A 37 GIGMTEWRIISVLSSAS---DCSVQKISDILGLDKAAVSRTVK 76 (148)
T ss_dssp TCCHHHHHHHHHHHHSS---SBCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCC---CCCHHHHHHHHCCCHHHHHHHHH
Confidence 58888888887765433 59999999999999999994443
No 144
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=76.73 E-value=1.7 Score=37.36 Aligned_cols=29 Identities=28% Similarity=0.431 Sum_probs=24.9
Q ss_pred CCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 559 GRMK-TLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 559 g~~~-Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
|..+ |..|||+.||||+.+|| +|+++|..
T Consensus 40 g~~lps~~eLa~~lgVSr~tVr----~al~~L~~ 69 (102)
T 2b0l_A 40 NEGLLVASKIADRVGITRSVIV----NALRKLES 69 (102)
T ss_dssp TEEEECHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCcCCCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 3335 99999999999999999 78888876
No 145
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=76.70 E-value=4.1 Score=30.94 Aligned_cols=24 Identities=13% Similarity=0.285 Sum_probs=21.0
Q ss_pred CCCCHHHHHHHH-----CCCHHHHHHHHH
Q 007404 560 RMKTLQEIGELM-----GVSRERIRQIES 583 (605)
Q Consensus 560 ~~~Tl~EIAe~L-----GISrerVRqie~ 583 (605)
.+.|.+||++.| +||..||+..+.
T Consensus 18 ~~~t~~el~~~l~~~~~~vs~~Tv~R~L~ 46 (64)
T 2p5k_A 18 EIETQDELVDMLKQDGYKVTQATVSRDIK 46 (64)
T ss_dssp CCCSHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 469999999999 999999995554
No 146
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=76.55 E-value=2 Score=34.06 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=20.8
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 007404 562 KTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRqie~R 584 (605)
.|++|||+.+|||+.||+.+++.
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLng 23 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVING 23 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 47899999999999999988874
No 147
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=76.47 E-value=11 Score=34.64 Aligned_cols=49 Identities=20% Similarity=0.148 Sum_probs=34.4
Q ss_pred HhcCCHHHHHHHHHHHhcC-C---------CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 539 LDTLNPRERQVVRWRFGLE-D---------GRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 539 L~~L~~rER~VL~LRyGl~-d---------g~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
+...+..+|-.-.+..... . .-++|.++||..+|+|+++|. |++++|++
T Consensus 114 ~~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvs----R~l~~L~~ 172 (202)
T 2zcw_A 114 LATQRLKNRMAAALLELSETPLAHEEEGKVVLKATHDELAAAVGSVRETVT----KVIGELAR 172 (202)
T ss_dssp HHHCCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHhcCCCCCCcEEccCCCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 4567888776433332111 1 124899999999999999999 78888876
No 148
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=76.38 E-value=3.7 Score=36.04 Aligned_cols=30 Identities=17% Similarity=0.238 Sum_probs=25.4
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 558 DGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 558 dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
++.+.|.+|||+.+|||+.+|+ +.+.+|++
T Consensus 23 ~~~~~s~~ela~~~~i~~~~v~----~il~~L~~ 52 (129)
T 2y75_A 23 GEGPTSLKSIAQTNNLSEHYLE----QLVSPLRN 52 (129)
T ss_dssp TSCCBCHHHHHHHTTSCHHHHH----HHHHHHHH
T ss_pred CCCcCCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 3567999999999999999999 66677765
No 149
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=76.36 E-value=4.4 Score=37.50 Aligned_cols=29 Identities=24% Similarity=0.353 Sum_probs=25.4
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhH
Q 007404 560 RMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 592 (605)
Q Consensus 560 ~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 592 (605)
-+.|.++||..+|+|+++|. |++++|++.
T Consensus 162 ~~~t~~~lA~~lg~sr~tvs----R~l~~l~~~ 190 (216)
T 4ev0_A 162 FQIRHHELAALAGTSRETVS----RVLHALAEE 190 (216)
T ss_dssp EECCHHHHHHHHTSCHHHHH----HHHHHHHHT
T ss_pred CCCCHHHHHHHhCCCHHHHH----HHHHHHHHC
Confidence 35899999999999999999 888888863
No 150
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=76.32 E-value=6.2 Score=33.54 Aligned_cols=42 Identities=21% Similarity=0.310 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHhHHh
Q 007404 545 RERQVVRWRFGLEDGRMKTLQEIGELM-GVSRERIRQIESSAFRKLKNKKR 594 (605)
Q Consensus 545 rER~VL~LRyGl~dg~~~Tl~EIAe~L-GISrerVRqie~RALkKLR~~l~ 594 (605)
|+--+...+-..+ +|+.+||+.| |....||. .|.+|+.+.+.
T Consensus 34 RqiamyL~r~~t~----~Sl~~IG~~fggrdHsTV~----ha~~ki~~~~~ 76 (94)
T 1j1v_A 34 RQMAMALAKELTN----HSLPEIGDAFGGRDHTTVL----HACRKIEQLRE 76 (94)
T ss_dssp HHHHHHHHHHHSC----CCHHHHHHHTTSCCHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC----cCHHHHHHHhCCCCHHHHH----HHHHHHHHHHH
Confidence 4434444455455 9999999999 89999999 56666666553
No 151
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=76.11 E-value=21 Score=30.87 Aligned_cols=77 Identities=19% Similarity=0.217 Sum_probs=46.9
Q ss_pred CCHHHHHHhcCCCHHHHHHHHhCCCCCCCccccccccCCCCCCcccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHH-
Q 007404 469 PNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRER- 547 (605)
Q Consensus 469 PT~eEIAe~lgis~e~V~~~l~~~~~~~SLD~~i~~d~~~~l~d~l~D~~~~spEe~l~~~el~~~L~~aL~~L~~rER- 547 (605)
-+..+||+.+|++...|..++...... + .... -.-+. .|++.+.
T Consensus 23 ~s~~~ia~~lgis~~Tv~r~~~~~~~~-------g---~~~~---~gr~~----------------------~l~~~~~~ 67 (141)
T 1u78_A 23 VSLHEMSRKISRSRHCIRVYLKDPVSY-------G---TSKR---APRRK----------------------ALSVRDER 67 (141)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHSGGGT-------T---CCCC---CCCCC----------------------SSCHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHccccc-------C---CcCC---CCCCC----------------------cCCHHHHH
Confidence 478999999999999999988643211 0 0000 00000 1222222
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHC--CCHHHHHHHHHH
Q 007404 548 QVVRWRFGLEDGRMKTLQEIGELMG--VSRERIRQIESS 584 (605)
Q Consensus 548 ~VL~LRyGl~dg~~~Tl~EIAe~LG--ISrerVRqie~R 584 (605)
.|+.+ . .+ ...|..+|+..|| +|.++|+.++.+
T Consensus 68 ~i~~~-~-~~--~~~s~~~i~~~lg~~~s~~tV~r~l~~ 102 (141)
T 1u78_A 68 NVIRA-A-SN--SCKTARDIRNELQLSASKRTILNVIKR 102 (141)
T ss_dssp HHHHH-H-HH--CCCCHHHHHHHTTCCSCHHHHHHHHHH
T ss_pred HHHHH-H-hC--CCCCHHHHHHHHCCCccHHHHHHHHHH
Confidence 23333 1 11 1279999999999 899999988865
No 152
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=75.76 E-value=3.2 Score=34.97 Aligned_cols=38 Identities=11% Similarity=0.192 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 007404 543 NPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES 583 (605)
Q Consensus 543 ~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~ 583 (605)
+|....||..-...+ ++|..|||+.+|+|+.+|++++.
T Consensus 26 ~~~Rl~IL~~l~~~~---~~~~~ela~~l~is~stvs~hL~ 63 (99)
T 2zkz_A 26 HPMRLKIVNELYKHK---ALNVTQIIQILKLPQSTVSQHLC 63 (99)
T ss_dssp SHHHHHHHHHHHHHS---CEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCC---CcCHHHHHHHHCcCHHHHHHHHH
Confidence 455556773332222 38999999999999999995543
No 153
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=75.67 E-value=3.4 Score=31.57 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=21.4
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 007404 562 KTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRqie~R 584 (605)
+|..++|+.+|||+.+|.++++.
T Consensus 17 lsq~~lA~~~gis~~~i~~~e~g 39 (71)
T 1zug_A 17 MTQTELATKAGVKQQSIQLIEAG 39 (71)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCHHHHHHHhCCCHHHHHHHHcC
Confidence 89999999999999999998864
No 154
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=75.54 E-value=2.1 Score=34.70 Aligned_cols=23 Identities=9% Similarity=0.174 Sum_probs=21.6
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 007404 562 KTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRqie~R 584 (605)
+|+.++|+.+|||+.+|++++.+
T Consensus 23 lT~~~LA~~~Gvs~stls~~~~~ 45 (74)
T 1neq_A 23 LSLSALSRQFGYAPTTLANALER 45 (74)
T ss_dssp CCHHHHHHHHSSCHHHHHHTTTS
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 99999999999999999988775
No 155
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=75.50 E-value=4.6 Score=35.11 Aligned_cols=44 Identities=16% Similarity=0.299 Sum_probs=34.5
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 541 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
.|++.|..||..-+..+ +.|..+||+.+|+|+.+|.. .+++|-+
T Consensus 30 ~l~~~~~~iL~~l~~~~---~~~~~~la~~l~~s~~tvs~----~l~~L~~ 73 (145)
T 2a61_A 30 GITPAQFDILQKIYFEG---PKRPGELSVLLGVAKSTVTG----LVKRLEA 73 (145)
T ss_dssp TCCHHHHHHHHHHHHHC---CBCHHHHHHHHTCCHHHHHH----HHHHHHH
T ss_pred CCCHHHHHHHHHHHHcC---CCCHHHHHHHHCCCchhHHH----HHHHHHH
Confidence 58999988887766432 49999999999999999994 4555543
No 156
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=75.30 E-value=7.3 Score=34.17 Aligned_cols=48 Identities=17% Similarity=0.365 Sum_probs=32.0
Q ss_pred HHHHhcC-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 536 EKVLDTL-NPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 536 ~~aL~~L-~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
..++..| ++....||.+-. + .+++..|||+.+|+|+.+|+ +.+++|++
T Consensus 37 ~~~~kaL~~~~rl~IL~~L~--~--~~~s~~ela~~lgis~stvs----~~L~~Le~ 85 (122)
T 1r1t_A 37 AEFFAVLADPNRLRLLSLLA--R--SELCVGDLAQAIGVSESAVS----HQLRSLRN 85 (122)
T ss_dssp HHHHHHHCCHHHHHHHHHHT--T--CCBCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHH--c--CCCCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 3344444 444556666532 2 24899999999999999999 44555554
No 157
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=75.13 E-value=9.9 Score=36.81 Aligned_cols=27 Identities=37% Similarity=0.599 Sum_probs=24.6
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 561 MKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 561 ~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
++|.++||..+|+|+++|. |.+++|++
T Consensus 217 ~lt~~~lA~~lG~sr~tvs----R~l~~L~~ 243 (260)
T 3kcc_A 217 KITRQEIGQIVGCSRETVG----RILKMLED 243 (260)
T ss_dssp ECCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 5899999999999999998 88888886
No 158
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=75.08 E-value=3.6 Score=31.21 Aligned_cols=23 Identities=22% Similarity=0.445 Sum_probs=21.4
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 007404 562 KTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRqie~R 584 (605)
+|..++|+.+|||+.+|+++++.
T Consensus 15 lsq~~lA~~~gis~~~i~~~e~g 37 (69)
T 1r69_A 15 LNQAELAQKVGTTQQSIEQLENG 37 (69)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 89999999999999999998764
No 159
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=75.07 E-value=3.4 Score=33.03 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=21.9
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 007404 562 KTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRqie~R 584 (605)
+|.+++|+.+|||+.+|+++++.
T Consensus 24 ltq~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 24 YSLSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 99999999999999999999875
No 160
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=74.94 E-value=3.5 Score=38.94 Aligned_cols=43 Identities=19% Similarity=0.245 Sum_probs=30.6
Q ss_pred hcCCHHHHHHHHHHHhc--CCCCCC--CHHHHHHHHCCC-HHHHHHHHHH
Q 007404 540 DTLNPRERQVVRWRFGL--EDGRMK--TLQEIGELMGVS-RERIRQIESS 584 (605)
Q Consensus 540 ~~L~~rER~VL~LRyGl--~dg~~~--Tl~EIAe~LGIS-rerVRqie~R 584 (605)
..|+++|+.++..-... ..| + |.+|+|+.+|+| +.+|++++.+
T Consensus 2 ~~lt~~q~~i~~~i~~~~~~~g--~~ps~~elA~~lgiss~~tv~~~~~~ 49 (202)
T 1jhf_A 2 KALTARQQEVFDLIRDHISQTG--MPPTRAEIAQRLGFRSPNAAEEHLKA 49 (202)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHS--SCCCHHHHHHHTTCSSHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHhC--CCccHHHHHHHhCCCChHHHHHHHHH
Confidence 35788887766432211 111 5 999999999999 9999988753
No 161
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=74.93 E-value=11 Score=33.92 Aligned_cols=50 Identities=8% Similarity=0.100 Sum_probs=36.3
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHH
Q 007404 531 MKEDLEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIE 582 (605)
Q Consensus 531 l~~~L~~aL~--~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie 582 (605)
.+..+...|. .|++.|-.||..-+..+ ++.+..|||+.+|+++.+|..++
T Consensus 16 ~~~~~~~~l~~~gLt~~q~~vL~~L~~~~--~~~~~~eLa~~l~~~~~tvs~~v 67 (151)
T 4aik_A 16 WRALIDHRLKPLELTQTHWVTLYNINRLP--PEQSQIQLAKAIGIEQPSLVRTL 67 (151)
T ss_dssp HHHHHHHHTGGGCCCHHHHHHHHHHHHSC--TTSCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHcC--CCCcHHHHHHHHCcCHHHHHHHH
Confidence 3445555554 48999988887654333 34788999999999999999443
No 162
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=74.85 E-value=14 Score=34.38 Aligned_cols=49 Identities=27% Similarity=0.253 Sum_probs=34.3
Q ss_pred HhcCCHHHHHHHHHHHhcC-CC---------CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 539 LDTLNPRERQVVRWRFGLE-DG---------RMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 539 L~~L~~rER~VL~LRyGl~-dg---------~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
+...+.++|-.-.+..... .| -++|.++||..+|+|+++|. |.+++|++
T Consensus 155 l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~lt~~~lA~~lg~sr~tvs----R~l~~L~~ 213 (230)
T 3iwz_A 155 LAFLDVTDRIVRTLHDLSKEPEAMSHPQGTQLRVSRQELARLVGCSREMAG----RVLKKLQA 213 (230)
T ss_dssp HHHCCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHhhCCCCCCCceecCCCHHHHHHHhCCcHHHHH----HHHHHHHH
Confidence 3456777775444332211 11 24799999999999999999 88888886
No 163
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=74.85 E-value=5.7 Score=31.55 Aligned_cols=23 Identities=9% Similarity=0.320 Sum_probs=21.5
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 007404 562 KTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRqie~R 584 (605)
+|..|+|+.+|||+.+|.++++.
T Consensus 26 ltq~~lA~~~gvs~~~is~~e~g 48 (80)
T 3kz3_A 26 LSYESVADKMGMGQSAVAALFNG 48 (80)
T ss_dssp CCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCHHHHHHHhCcCHHHHHHHHcC
Confidence 89999999999999999999864
No 164
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=74.65 E-value=2.4 Score=36.81 Aligned_cols=29 Identities=17% Similarity=0.378 Sum_probs=24.8
Q ss_pred CCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 559 GRMK-TLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 559 g~~~-Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
|..+ |..++|+.||||+.+|| +|++.|..
T Consensus 30 G~~lPs~~~La~~~~vSr~tvr----~al~~L~~ 59 (113)
T 3tqn_A 30 GEMIPSIRKISTEYQINPLTVS----KAYQSLLD 59 (113)
T ss_dssp TCEECCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCcCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 3446 99999999999999999 88888875
No 165
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=74.65 E-value=2.3 Score=37.96 Aligned_cols=29 Identities=21% Similarity=0.510 Sum_probs=25.0
Q ss_pred CCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 559 GRMK-TLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 559 g~~~-Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
|..+ |..++|+.||||+.+|| +|++.|..
T Consensus 35 G~~LPser~La~~~gVSr~tVR----eAl~~L~~ 64 (134)
T 4ham_A 35 GEKILSIREFASRIGVNPNTVS----KAYQELER 64 (134)
T ss_dssp TCEECCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCCccHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 3446 89999999999999999 88988875
No 166
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=74.58 E-value=2.5 Score=39.73 Aligned_cols=27 Identities=33% Similarity=0.463 Sum_probs=24.3
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 561 MKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 561 ~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
++|.++||..+|+|+++|. |++++|++
T Consensus 163 ~~t~~~lA~~lG~sr~tvs----R~l~~L~~ 189 (222)
T 1ft9_A 163 DFTVEEIANLIGSSRQTTS----TALNSLIK 189 (222)
T ss_dssp CCCHHHHHHHHCSCHHHHH----HHHHHHHH
T ss_pred cCCHHHHHHHhCCcHHHHH----HHHHHHHH
Confidence 4899999999999999999 78888876
No 167
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=74.30 E-value=3.2 Score=33.05 Aligned_cols=23 Identities=17% Similarity=0.302 Sum_probs=21.6
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 007404 562 KTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRqie~R 584 (605)
+|.+|+|+.+|||+.+|.++++.
T Consensus 28 ltq~elA~~~gis~~~is~~e~g 50 (83)
T 3f6w_A 28 ITQKELAARLGRPQSFVSKTENA 50 (83)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHCC
Confidence 99999999999999999999863
No 168
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=74.26 E-value=3.4 Score=30.94 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=21.5
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 007404 562 KTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRqie~R 584 (605)
+|.+++|+.+|+|+.+|+++++.
T Consensus 15 ~s~~~lA~~~gis~~~i~~~e~g 37 (66)
T 2xi8_A 15 ISQSELAALLEVSRQTINGIEKN 37 (66)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 89999999999999999999873
No 169
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=74.14 E-value=3.3 Score=36.53 Aligned_cols=27 Identities=19% Similarity=0.357 Sum_probs=22.5
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 561 MKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 561 ~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
+.|..+||+.+|+|+.+|+ +++++|.+
T Consensus 22 ~~~~~ela~~l~vs~~tvs----~~l~~Le~ 48 (142)
T 1on2_A 22 YARVSDIAEALAVHPSSVT----KMVQKLDK 48 (142)
T ss_dssp SCCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 4999999999999999999 55555543
No 170
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=74.10 E-value=6.6 Score=38.98 Aligned_cols=47 Identities=11% Similarity=0.256 Sum_probs=36.6
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 538 VLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 538 aL~~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
.-..|++.+..||..-...+ +.|+.|||+.+|+++.+|. |.+++|.+
T Consensus 146 ~~~~L~~~~~~IL~~L~~~~---~~s~~eLA~~lglsksTv~----r~L~~Le~ 192 (244)
T 2wte_A 146 LMRDYSREEMKLLNVLYETK---GTGITELAKMLDKSEKTLI----NKIAELKK 192 (244)
T ss_dssp HHSCCCHHHHHHHHHHHHHT---CBCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHcC---CCCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 34579999999998644322 3999999999999999999 55666654
No 171
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=74.07 E-value=2.6 Score=39.67 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=24.9
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhH
Q 007404 561 MKTLQEIGELMGVSRERIRQIESSAFRKLKNK 592 (605)
Q Consensus 561 ~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 592 (605)
+.|.++||..+|+|+++|. |++++|++.
T Consensus 175 ~~t~~~iA~~lg~sr~tvs----R~l~~L~~~ 202 (231)
T 3e97_A 175 PLGTQDIMARTSSSRETVS----RVLKRLEAH 202 (231)
T ss_dssp CCCHHHHHHHHTCCHHHHH----HHHHHHHHT
T ss_pred CCCHHHHHHHhCCcHHHHH----HHHHHHHHC
Confidence 4899999999999999999 888888863
No 172
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=74.02 E-value=10 Score=33.29 Aligned_cols=38 Identities=26% Similarity=0.317 Sum_probs=27.0
Q ss_pred cCCHHHHHHHHHHHhc----CCCCCCCHHHHHHHHCCCHHHHHH
Q 007404 541 TLNPRERQVVRWRFGL----EDGRMKTLQEIGELMGVSRERIRQ 580 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl----~dg~~~Tl~EIAe~LGISrerVRq 580 (605)
-+++.|+.-|..|+-. ..| +|+.||++.+|+|..||..
T Consensus 36 L~T~~E~~alaqR~~Ia~lL~~G--~SyreIa~~tG~StaTIsR 77 (107)
T 3frw_A 36 VCTINELLSLSQRFEVAKMLTDK--RTYLDISEKTGASTATISR 77 (107)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHTT--CCHHHHHHHHCCCHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHCccHHHHHH
Confidence 3666666555444322 123 9999999999999999973
No 173
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=73.95 E-value=3.9 Score=35.40 Aligned_cols=44 Identities=11% Similarity=0.130 Sum_probs=34.6
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 541 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
.|++.|..||..-+..+ +.|..|||+.+|+|+.+|.. .+++|.+
T Consensus 33 ~lt~~~~~iL~~l~~~~---~~t~~ela~~l~~s~~~vs~----~l~~Le~ 76 (142)
T 2fbi_A 33 GLTEQQWRVIRILRQQG---EMESYQLANQACILRPSMTG----VLARLER 76 (142)
T ss_dssp TCCHHHHHHHHHHHHHC---SEEHHHHHHHTTCCHHHHHH----HHHHHHH
T ss_pred CCCHHHHHHHHHHHHcC---CCCHHHHHHHHCCCHhHHHH----HHHHHHH
Confidence 58999998887766433 38999999999999999994 4555543
No 174
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=73.94 E-value=8.9 Score=33.60 Aligned_cols=38 Identities=26% Similarity=0.338 Sum_probs=29.3
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 007404 541 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~R 584 (605)
.+++.+ |-.+|--.+ +|.+|+|+.+|+|+.+|++++.-
T Consensus 70 ~~~~~~--l~~~R~~~g----lsq~~la~~~g~s~~~i~~~E~g 107 (133)
T 3o9x_A 70 TVAPEF--IVKVRKKLS----LTQKEASEIFGGGVNAFSRYEKG 107 (133)
T ss_dssp TCCHHH--HHHHHHHTT----CCHHHHHHHHCSCTTHHHHHHHT
T ss_pred CCCHHH--HHHHHHHcC----CCHHHHHHHHCCCHHHHHHHHCC
Confidence 355554 444454455 99999999999999999999874
No 175
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=73.91 E-value=3.6 Score=31.06 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=21.5
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 007404 562 KTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRqie~R 584 (605)
+|..++|+.+|||+.+|.++++.
T Consensus 19 ~s~~~lA~~~gis~~~i~~~e~g 41 (68)
T 2r1j_L 19 IRQAALGKMVGVSNVAISQWERS 41 (68)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCHHHHHHHHCCCHHHHHHHHcC
Confidence 89999999999999999998864
No 176
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=73.90 E-value=4.4 Score=32.59 Aligned_cols=45 Identities=13% Similarity=0.162 Sum_probs=34.6
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHC----CCHHHHHHHHHHHHHHHHh
Q 007404 540 DTLNPRERQVVRWRFGLEDGRMKTLQEIGELMG----VSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 540 ~~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LG----ISrerVRqie~RALkKLR~ 591 (605)
..|++.|..||..-+. + .+.|..||++.++ +++.+|. +.+++|.+
T Consensus 5 ~~lt~~e~~vL~~L~~-~--~~~t~~ei~~~l~~~~~~s~~Tv~----~~l~rL~~ 53 (82)
T 1p6r_A 5 PQISDAELEVMKVIWK-H--SSINTNEVIKELSKTSTWSPKTIQ----TMLLRLIK 53 (82)
T ss_dssp CCCCHHHHHHHHHHHT-S--SSEEHHHHHHHHHHHSCCCHHHHH----HHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc-C--CCCCHHHHHHHHhhcCCccHHHHH----HHHHHHHH
Confidence 4689999999887654 2 3599999999997 7999999 55555543
No 177
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=73.80 E-value=3.7 Score=33.14 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=21.7
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 007404 562 KTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRqie~R 584 (605)
+|..|+|+.+|||+.+|.++++.
T Consensus 32 lsq~elA~~~gis~~~is~~e~g 54 (83)
T 2a6c_A 32 LTQFKAAELLGVTQPRVSDLMRG 54 (83)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 99999999999999999999864
No 178
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=73.76 E-value=6.7 Score=34.61 Aligned_cols=51 Identities=20% Similarity=0.311 Sum_probs=37.0
Q ss_pred HHHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 533 EDLEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 533 ~~L~~aL~--~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
..+...+. .|++.|..||..- .. .+.|..|||+.+|+++.+|. +.+++|.+
T Consensus 25 ~~~~~~~~~~~lt~~q~~iL~~l-~~---~~~t~~eLa~~l~~~~~~vs----~~l~~Le~ 77 (151)
T 3kp7_A 25 KLLKDLQTEYGISAEQSHVLNML-SI---EALTVGQITEKQGVNKAAVS----RRVKKLLN 77 (151)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHH-HH---SCBCHHHHHHHHCSCSSHHH----HHHHHHHH
T ss_pred HHHHHHhhcCCCCHHHHHHHHHH-Hc---CCcCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 34444443 5999998888766 22 24999999999999999999 44555543
No 179
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=73.70 E-value=4.9 Score=38.32 Aligned_cols=42 Identities=21% Similarity=0.390 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 542 LNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 542 L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
+++.++.||.+-. + | +.|..|||+.+|+|+.+|+++ +++|.+
T Consensus 18 ~d~~~~~IL~~L~--~-~-~~s~~eLA~~lglS~stv~~~----l~~Le~ 59 (192)
T 1uly_A 18 LEDTRRKILKLLR--N-K-EMTISQLSEILGKTPQTIYHH----IEKLKE 59 (192)
T ss_dssp HSHHHHHHHHHHT--T-C-CBCHHHHHHHHTCCHHHHHHH----HHHHHH
T ss_pred CCHHHHHHHHHHH--c-C-CCCHHHHHHHHCcCHHHHHHH----HHHHHH
Confidence 5788888887653 2 2 599999999999999999944 455543
No 180
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=73.28 E-value=3.6 Score=32.47 Aligned_cols=23 Identities=39% Similarity=0.590 Sum_probs=21.6
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 007404 562 KTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRqie~R 584 (605)
+|.+++|+.+|||+.+|.++++.
T Consensus 16 lsq~~lA~~~gis~~~i~~~e~g 38 (77)
T 2k9q_A 16 LTAKSVAEEMGISRQQLCNIEQS 38 (77)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHTC
T ss_pred CCHHHHHHHhCCCHHHHHHHHcC
Confidence 89999999999999999999864
No 181
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=73.23 E-value=2.9 Score=39.18 Aligned_cols=27 Identities=19% Similarity=0.372 Sum_probs=24.4
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 561 MKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 561 ~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
+.|.++||..+|+|+++|. |++++|++
T Consensus 167 ~~t~~~lA~~lg~sr~tvs----R~l~~l~~ 193 (220)
T 2fmy_A 167 GLNTEEIALMLGTTRQTVS----VLLNDFKK 193 (220)
T ss_dssp SSCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred cCCHHHHHHHhCCcHHHHH----HHHHHHHH
Confidence 5899999999999999998 78888876
No 182
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=73.21 E-value=4.2 Score=31.25 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=21.5
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 007404 562 KTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRqie~R 584 (605)
+|..++|+.+|||+.+|+++++.
T Consensus 27 ~s~~~lA~~~gis~~~i~~~e~g 49 (74)
T 1y7y_A 27 LSQETLAFLSGLDRSYVGGVERG 49 (74)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHCC
Confidence 99999999999999999998864
No 183
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=73.15 E-value=4.5 Score=38.11 Aligned_cols=42 Identities=24% Similarity=0.211 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 544 PRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 544 ~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
+|.+.||.+-. .++.+.|.+|||+.||||+.||++. +++|++
T Consensus 21 ~R~~~Il~~L~--~~~~~~s~~eLa~~l~vS~~Ti~rd----i~~L~~ 62 (187)
T 1j5y_A 21 ERLKSIVRILE--RSKEPVSGAQLAEELSVSRQVIVQD----IAYLRS 62 (187)
T ss_dssp HHHHHHHHHHH--HCSSCBCHHHHHHHHTSCHHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHH--HcCCCcCHHHHHHHHCcCHHHHHHH----HHHHHH
Confidence 46666766532 2345699999999999999999954 445554
No 184
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=73.15 E-value=7.3 Score=34.92 Aligned_cols=50 Identities=10% Similarity=0.090 Sum_probs=36.9
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 007404 531 MKEDLEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES 583 (605)
Q Consensus 531 l~~~L~~aL~--~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~ 583 (605)
+...+...+. .|++.|..||..-+..+ +.|..|||+.+|+++.+|..++.
T Consensus 38 ~~~~~~~~~~~~glt~~q~~vL~~l~~~~---~~t~~eLa~~l~~~~~~vs~~l~ 89 (161)
T 3e6m_A 38 WSSELNQALASEKLPTPKLRLLSSLSAYG---ELTVGQLATLGVMEQSTTSRTVD 89 (161)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHS---EEEHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhCC---CCCHHHHHHHHCCCHHHHHHHHH
Confidence 3344444443 59999999888766433 49999999999999999994433
No 185
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=73.05 E-value=4.6 Score=34.79 Aligned_cols=53 Identities=13% Similarity=0.238 Sum_probs=38.7
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 532 KEDLEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 532 ~~~L~~aL~--~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
...+...+. .|++.+..||..-+..+ +.|..|||+.+|+|+.+|.+ .+++|.+
T Consensus 19 ~~~~~~~~~~~~l~~~~~~iL~~l~~~~---~~~~~ela~~l~~~~~tvs~----~l~~L~~ 73 (139)
T 3bja_A 19 QKNLDKAIEQYDISYVQFGVIQVLAKSG---KVSMSKLIENMGCVPSNMTT----MIQRMKR 73 (139)
T ss_dssp HHHHHHHTGGGTCCHHHHHHHHHHHHSC---SEEHHHHHHHCSSCCTTHHH----HHHHHHH
T ss_pred HHHHHhhhhhcCCCHHHHHHHHHHHHcC---CcCHHHHHHHHCCChhHHHH----HHHHHHH
Confidence 344455554 59999999988765432 49999999999999999994 4555543
No 186
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=72.84 E-value=4.3 Score=31.54 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=21.5
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 007404 562 KTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRqie~R 584 (605)
+|..++|+.+|||+.+|.++++.
T Consensus 24 lsq~~lA~~~gis~~~i~~~e~g 46 (77)
T 2b5a_A 24 VSQEELADLAGLHRTYISEVERG 46 (77)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHTT
T ss_pred CCHHHHHHHHCCCHHHHHHHHCC
Confidence 89999999999999999999863
No 187
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=72.80 E-value=2.9 Score=33.12 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=21.7
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 007404 562 KTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRqie~R 584 (605)
+|.+|+|+.+|||+.+|++++.-
T Consensus 25 ltq~elA~~~gvs~~tis~~E~G 47 (73)
T 3fmy_A 25 LTQKEASEIFGGGVNAFSRYEKG 47 (73)
T ss_dssp CCHHHHHHHHCSCTTHHHHHHTT
T ss_pred CCHHHHHHHhCcCHHHHHHHHcC
Confidence 99999999999999999999864
No 188
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=72.77 E-value=4.9 Score=31.28 Aligned_cols=23 Identities=13% Similarity=0.354 Sum_probs=21.6
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 007404 562 KTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRqie~R 584 (605)
+|..++|+.+|||+.+|+++++.
T Consensus 21 ~sq~~lA~~~gis~~~i~~~e~g 43 (78)
T 3b7h_A 21 LTINRVATLAGLNQSTVNAMFEG 43 (78)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHCT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 99999999999999999998864
No 189
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=72.73 E-value=5.1 Score=32.07 Aligned_cols=23 Identities=22% Similarity=0.409 Sum_probs=21.7
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 007404 562 KTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRqie~R 584 (605)
+|..++|+.+|||+.+|.++++.
T Consensus 26 lsq~~lA~~~gis~~~i~~~e~g 48 (88)
T 2wiu_B 26 WTQSELAKKIGIKQATISNFENN 48 (88)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCHHHHHHHhCCCHHHHHHHHcC
Confidence 99999999999999999999874
No 190
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=72.50 E-value=8.1 Score=36.37 Aligned_cols=49 Identities=16% Similarity=0.070 Sum_probs=34.1
Q ss_pred hcCCHHHHHHHHHHHhcC---C----CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhH
Q 007404 540 DTLNPRERQVVRWRFGLE---D----GRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 592 (605)
Q Consensus 540 ~~L~~rER~VL~LRyGl~---d----g~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 592 (605)
...+..+|-.-.+..... + .-|+|.++||..+|+|+++|. |++++|++.
T Consensus 150 ~~~~~~~Rl~~~L~~~~~~~~~~~~~~l~~t~~~iA~~lg~sr~tvs----R~l~~L~~~ 205 (237)
T 3fx3_A 150 KAQTGAQRVAEFLLELCDCDTGACEVTLPYDKMLIAGRLGMKPESLS----RAFSRLKAA 205 (237)
T ss_dssp CCCCHHHHHHHHHHHHCCC-----EEECCSCTHHHHHHTTCCHHHHH----HHHHHHGGG
T ss_pred hcCCHHHHHHHHHHHHhhhcCCCeEEEecCCHHHHHHHhCCCHHHHH----HHHHHHHHC
Confidence 346777776544443221 1 135789999999999999999 778888763
No 191
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=72.45 E-value=3 Score=39.16 Aligned_cols=27 Identities=33% Similarity=0.501 Sum_probs=24.3
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 561 MKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 561 ~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
++|.++||..+|+|+++|. |++++|++
T Consensus 177 ~~t~~~lA~~lg~sr~tvs----R~l~~l~~ 203 (227)
T 3d0s_A 177 DLTQEEIAQLVGASRETVN----KALADFAH 203 (227)
T ss_dssp CCCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred CCCHHHHHHHhCCcHHHHH----HHHHHHHH
Confidence 5899999999999999999 77888876
No 192
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=72.34 E-value=4.7 Score=35.83 Aligned_cols=44 Identities=14% Similarity=0.261 Sum_probs=34.1
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 541 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
.|++.|..||..-+..+ +.|..|||+.+|+++.+|.+ .+++|-+
T Consensus 41 ~lt~~~~~iL~~l~~~~---~~t~~ela~~l~is~~tvs~----~l~~Le~ 84 (154)
T 2eth_A 41 DMKTTELYAFLYVALFG---PKKMKEIAEFLSTTKSNVTN----VVDSLEK 84 (154)
T ss_dssp HSBHHHHHHHHHHHHHC---CBCHHHHHHHTTSCHHHHHH----HHHHHHH
T ss_pred CCCHHHHHHHHHHHHcC---CCCHHHHHHHHCCCHHHHHH----HHHHHHH
Confidence 48888888887765433 49999999999999999994 4555543
No 193
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=72.04 E-value=10 Score=36.16 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=24.7
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 561 MKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 561 ~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
++|.++||..+|+|+++|. |++++|++
T Consensus 193 ~lt~~~lA~~lG~sr~tvs----R~l~~L~~ 219 (243)
T 3la7_A 193 KLSHQAIAEAIGSTRVTVT----RLLGDLRE 219 (243)
T ss_dssp CCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred cCCHHHHHHHHCCcHHHHH----HHHHHHHH
Confidence 5899999999999999999 88888886
No 194
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=72.02 E-value=14 Score=35.28 Aligned_cols=28 Identities=25% Similarity=0.415 Sum_probs=24.9
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhH
Q 007404 561 MKTLQEIGELMGVSRERIRQIESSAFRKLKNK 592 (605)
Q Consensus 561 ~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 592 (605)
+.|.++||..+|+|+++|. |++++|++.
T Consensus 177 ~~t~~~iA~~lG~sr~tvs----R~l~~L~~~ 204 (250)
T 3e6c_C 177 PLSQKSIGEITGVHHVTVS----RVLASLKRE 204 (250)
T ss_dssp CCCHHHHHHHHTCCHHHHH----HHHHHHHHT
T ss_pred CCCHHHHHHHhCCcHHHHH----HHHHHHHHC
Confidence 5899999999999999999 788888763
No 195
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=72.02 E-value=12 Score=32.51 Aligned_cols=38 Identities=8% Similarity=-0.010 Sum_probs=31.2
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHH
Q 007404 541 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIE 582 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie 582 (605)
.|++.|..||..-+..+ + |..|||+.+|+++.+|.+++
T Consensus 34 ~lt~~~~~iL~~l~~~~---~-~~~~la~~l~~~~~tvs~~l 71 (144)
T 3f3x_A 34 NLSYLDFSILKATSEEP---R-SMVYLANRYFVTQSAITAAV 71 (144)
T ss_dssp SCCHHHHHHHHHHHHSC---E-EHHHHHHHHTCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCC---C-CHHHHHHHHCCChhHHHHHH
Confidence 68999999888765432 2 99999999999999999443
No 196
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=71.67 E-value=3.2 Score=37.06 Aligned_cols=29 Identities=10% Similarity=0.195 Sum_probs=25.1
Q ss_pred CCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 559 GRMK-TLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 559 g~~~-Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
|..+ |..++|+.||||+.+|| +|+++|..
T Consensus 25 G~~LPse~~La~~~gvSr~tVr----~Al~~L~~ 54 (129)
T 2ek5_A 25 DQRVPSTNELAAFHRINPATAR----NGLTLLVE 54 (129)
T ss_dssp TSCBCCHHHHHHHTTCCHHHHH----HHHHHHHT
T ss_pred CCcCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 4446 89999999999999999 78888875
No 197
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=71.44 E-value=4.2 Score=34.38 Aligned_cols=46 Identities=9% Similarity=0.043 Sum_probs=35.2
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 007404 540 DTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 590 (605)
Q Consensus 540 ~~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR 590 (605)
..|++.|..|+..-+..+ ....+.+||++.+|++..+|. ++|++|-
T Consensus 16 ~~Lt~~q~~Vl~~I~~~g-~~gi~qkeLa~~~~l~~~tvt----~iLk~LE 61 (91)
T 2dk5_A 16 KGSDNQEKLVYQIIEDAG-NKGIWSRDVRYKSNLPLTEIN----KILKNLE 61 (91)
T ss_dssp CCSCSSHHHHHHHHHHHC-TTCEEHHHHHHHTTCCHHHHH----HHHHHHH
T ss_pred cCCCHHHHHHHHHHHHcC-CCCcCHHHHHHHHCCCHHHHH----HHHHHHH
Confidence 467888888888776432 223999999999999999998 5666664
No 198
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=71.40 E-value=4.2 Score=35.54 Aligned_cols=43 Identities=9% Similarity=0.201 Sum_probs=29.0
Q ss_pred HHHhcC-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHH
Q 007404 537 KVLDTL-NPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIE 582 (605)
Q Consensus 537 ~aL~~L-~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie 582 (605)
.++..| ++....||.+-.. + .++|..|||+.+|+|+.+|++++
T Consensus 34 ~~~~al~~~~rl~IL~~L~~-~--~~~s~~eLa~~l~is~stvs~~L 77 (122)
T 1u2w_A 34 QILKAIADENRAKITYALCQ-D--EELCVCDIANILGVTIANASHHL 77 (122)
T ss_dssp HHHHHHHSHHHHHHHHHHHH-S--SCEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHH-C--CCcCHHHHHHHHCcCHHHHHHHH
Confidence 334443 4445566665432 2 24899999999999999999543
No 199
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=71.39 E-value=4.1 Score=33.15 Aligned_cols=23 Identities=13% Similarity=0.264 Sum_probs=21.7
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 007404 562 KTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRqie~R 584 (605)
+|.+|+|+.+|||+.+|+++++-
T Consensus 28 ltq~elA~~~gis~~~is~~E~G 50 (86)
T 3eus_A 28 LTQADLAERLDKPQSFVAKVETR 50 (86)
T ss_dssp CCHHHHHHHTTCCHHHHHHHHTT
T ss_pred CCHHHHHHHhCcCHHHHHHHHCC
Confidence 99999999999999999999864
No 200
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=71.34 E-value=4.3 Score=31.40 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=21.5
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 007404 562 KTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRqie~R 584 (605)
+|..++|+.+|||+.+|+++++.
T Consensus 19 ls~~~lA~~~gis~~~i~~~e~g 41 (76)
T 1adr_A 19 IRQAALGKMVGVSNVAISQWERS 41 (76)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 89999999999999999998874
No 201
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=71.27 E-value=2.7 Score=39.32 Aligned_cols=29 Identities=10% Similarity=0.149 Sum_probs=25.4
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhH
Q 007404 560 RMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 592 (605)
Q Consensus 560 ~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 592 (605)
-+.|.++||..+|+|+++|. |++++|++.
T Consensus 177 ~~~t~~~lA~~lg~sr~tvs----R~l~~l~~~ 205 (227)
T 3dkw_A 177 IPVAKQLVAGHLSIQPETFS----RIMHRLGDE 205 (227)
T ss_dssp CCSCTHHHHHHTTSCHHHHH----HHHHHHHHH
T ss_pred ecCCHHHHHHHhCCCHHHHH----HHHHHHHHC
Confidence 35899999999999999999 888888874
No 202
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=71.23 E-value=3.1 Score=36.91 Aligned_cols=29 Identities=10% Similarity=0.237 Sum_probs=24.8
Q ss_pred CCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 559 GRMK-TLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 559 g~~~-Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
|..+ |..++|+.||||+.+|| +|++.|..
T Consensus 32 G~~lPse~~La~~~~vSr~tvr----~Al~~L~~ 61 (126)
T 3by6_A 32 NDQLPSVRETALQEKINPNTVA----KAYKELEA 61 (126)
T ss_dssp TCEECCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCcCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 3446 99999999999999999 78888865
No 203
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=70.73 E-value=4.1 Score=35.97 Aligned_cols=28 Identities=18% Similarity=0.424 Sum_probs=24.2
Q ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 560 RMK-TLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 560 ~~~-Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
..+ |..+||+.||||+.+|| +|++.|..
T Consensus 35 ~~Lps~~~La~~~~vSr~tvr----~Al~~L~~ 63 (125)
T 3neu_A 35 DKLPSVREMGVKLAVNPNTVS----RAYQELER 63 (125)
T ss_dssp CBCCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 345 69999999999999999 88888875
No 204
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=70.55 E-value=5.1 Score=31.82 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=21.7
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 007404 562 KTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRqie~R 584 (605)
+|.+++|+.+|||+.+|+++++-
T Consensus 25 lsq~~lA~~~gis~~~i~~~e~g 47 (82)
T 3s8q_A 25 MTQEDLAYKSNLDRTYISGIERN 47 (82)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHTT
T ss_pred CCHHHHHHHhCcCHHHHHHHHCC
Confidence 99999999999999999999864
No 205
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=70.29 E-value=4.4 Score=35.42 Aligned_cols=44 Identities=14% Similarity=0.046 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 542 LNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 542 L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
|++.+..||..-+..+ .+.|..+||+.+|+++.+|.+ .+++|-+
T Consensus 33 l~~~~~~iL~~l~~~~--~~~~~~~la~~l~i~~~~vs~----~l~~Le~ 76 (147)
T 2hr3_A 33 VQFSQLVVLGAIDRLG--GDVTPSELAAAERMRSSNLAA----LLRELER 76 (147)
T ss_dssp HHHHHHHHHHHHHHTT--SCBCHHHHHHHTTCCHHHHHH----HHHHHHH
T ss_pred CCHHHHHHHHHHHHcC--CCCCHHHHHHHhCCChhhHHH----HHHHHHH
Confidence 6777777777665412 249999999999999999994 4555543
No 206
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=70.28 E-value=0.9 Score=47.20 Aligned_cols=40 Identities=15% Similarity=0.218 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 007404 542 LNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 542 L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~R 584 (605)
+.+++..||..-|..+ +.|.+|||+.||+|+.|||..+.+
T Consensus 18 ~~~r~~~iL~~l~~~~---~~t~~eLa~~l~vs~~Tv~r~l~~ 57 (345)
T 2o0m_A 18 VLQERFQILRNIYWMQ---PIGRRSLSETMGITERVLRTETDV 57 (345)
T ss_dssp -------------------------------------------
T ss_pred hhHHHHHHHHHHHHcC---CCCHHHHHHHHCcCHHHHHHHHHH
Confidence 5667777777665543 399999999999999999965544
No 207
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=70.17 E-value=4.7 Score=34.60 Aligned_cols=30 Identities=23% Similarity=0.432 Sum_probs=25.3
Q ss_pred HHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 007404 551 RWRFGLEDGRMKTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 551 ~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~R 584 (605)
.+|--.+ +|.+|+|+.+|||+.+|.++++-
T Consensus 43 ~~R~~~g----lTQ~eLA~~~gvs~~~is~~E~G 72 (101)
T 4ghj_A 43 QARLNRD----LTQSEVAEIAGIARKTVLNAEKG 72 (101)
T ss_dssp HHHHHTT----CCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHHHHcC----CCHHHHHHHcCCCHHHHHHHHCC
Confidence 4455555 99999999999999999999863
No 208
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=69.95 E-value=5.3 Score=31.56 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=21.6
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 007404 562 KTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRqie~R 584 (605)
+|..|+|+.+|||+.+|.++++.
T Consensus 24 lsq~~lA~~~gis~~~i~~~e~g 46 (84)
T 2ef8_A 24 LSQSELAIFLGLSQSDISKIESF 46 (84)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHTT
T ss_pred CCHHHHHHHhCCCHHHHHHHHcC
Confidence 99999999999999999999873
No 209
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=69.64 E-value=5.2 Score=33.36 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=21.9
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 007404 562 KTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRqie~R 584 (605)
+|..|+|+.+|||+.+|.++++.
T Consensus 38 lTq~eLA~~~GiS~~tis~iE~G 60 (88)
T 3t76_A 38 MKKGELREAVGVSKSTFAKLGKN 60 (88)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 99999999999999999999875
No 210
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=69.63 E-value=5.6 Score=36.57 Aligned_cols=52 Identities=12% Similarity=0.100 Sum_probs=38.1
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHH
Q 007404 531 MKEDLEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIE 582 (605)
Q Consensus 531 l~~~L~~aL~--~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie 582 (605)
+...+...+. .|++.|..||..-+..+++...|..|||+.+|+++.+|.+++
T Consensus 54 ~~~~~~~~l~~~glt~~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l 107 (181)
T 2fbk_A 54 LGREIERTYAASGLNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRI 107 (181)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHH
Confidence 3344555554 599999999887765442223899999999999999999443
No 211
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=69.63 E-value=3.3 Score=39.31 Aligned_cols=27 Identities=11% Similarity=0.310 Sum_probs=24.4
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 561 MKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 561 ~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
+.|.++||..+|+|+++|. |++++|++
T Consensus 186 ~~t~~~lA~~lG~sr~tvs----R~l~~l~~ 212 (232)
T 1zyb_A 186 KVKMDDLARCLDDTRLNIS----KTLNELQD 212 (232)
T ss_dssp ECCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred cCCHHHHHHHhCCChhHHH----HHHHHHHH
Confidence 4899999999999999998 88888876
No 212
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=69.51 E-value=5.7 Score=34.55 Aligned_cols=44 Identities=5% Similarity=0.126 Sum_probs=34.7
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 541 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
.|++.|..||..-+..+ +.|..|||+.+|+|+.+|. +.+++|.+
T Consensus 34 ~l~~~~~~iL~~l~~~~---~~~~~ela~~l~~~~~tvs----~~l~~L~~ 77 (142)
T 2bv6_A 34 NLTYPQFLVLTILWDES---PVNVKKVVTELALDTGTVS----PLLKRMEQ 77 (142)
T ss_dssp TCCHHHHHHHHHHHHSS---EEEHHHHHHHTTCCTTTHH----HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcC---CcCHHHHHHHHCCChhhHH----HHHHHHHH
Confidence 59999988887765432 4899999999999999999 45555544
No 213
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=69.28 E-value=4.9 Score=33.51 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=21.6
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 007404 562 KTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRqie~R 584 (605)
+|.+|+|+.+|||+.+|+++++.
T Consensus 44 lsq~elA~~lgvs~~~is~~E~G 66 (99)
T 2ppx_A 44 LTQEEFSARYHIPLGTLRDWEQG 66 (99)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHTT
T ss_pred CCHHHHHHHhCcCHHHHHHHHcC
Confidence 99999999999999999999863
No 214
>3hyi_A Protein DUF199/WHIA; laglidadg, homing endonuclease, helix-turn-helix, HTH, trans regulator; 2.34A {Thermotoga maritima} PDB: 3hyj_A
Probab=69.06 E-value=6.2 Score=40.55 Aligned_cols=42 Identities=21% Similarity=0.348 Sum_probs=35.9
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 007404 539 LDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES 583 (605)
Q Consensus 539 L~~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~ 583 (605)
|+.||+.-+++-.+|--.-+ .|++|+|+.++||++.|.-++.
T Consensus 241 l~~Lp~~L~e~a~lRl~~pd---aSL~ELge~l~isKSgVnhRlr 282 (295)
T 3hyi_A 241 LENLPEDLRRVALVRLRNKE---LSLRELGKKLNLTKSQIYSKLK 282 (295)
T ss_dssp GGGSCHHHHHHHHHHHHCTT---SCHHHHHHTTTCCHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHCcc---ccHHHHHHHhCcCHHHHHHHHH
Confidence 47899999999999975544 8999999999999999985543
No 215
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=68.97 E-value=4.8 Score=32.92 Aligned_cols=42 Identities=14% Similarity=0.282 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 543 NPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 543 ~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
++....||.+-+..+ +.|..|||+.+|+|+.+|. +.+++|.+
T Consensus 15 ~~~~~~iL~~L~~~~---~~~~~ela~~l~is~~tvs----~~l~~L~~ 56 (100)
T 1ub9_A 15 NPVRLGIMIFLLPRR---KAPFSQIQKVLDLTPGNLD----SHIRVLER 56 (100)
T ss_dssp SHHHHHHHHHHHHHS---EEEHHHHHHHTTCCHHHHH----HHHHHHHH
T ss_pred ChHHHHHHHHHHhcC---CcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 455666766543222 4899999999999999999 44555544
No 216
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=68.86 E-value=4.1 Score=34.91 Aligned_cols=42 Identities=17% Similarity=0.144 Sum_probs=32.7
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHC----CCHHHHHHHHH
Q 007404 539 LDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMG----VSRERIRQIES 583 (605)
Q Consensus 539 L~~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LG----ISrerVRqie~ 583 (605)
+..|++.|..||..-+.. .+.|..||++.++ +|+.+|..++.
T Consensus 5 ~~~lt~~~~~vL~~l~~~---~~~t~~ela~~l~~~~~~s~~tv~~~l~ 50 (123)
T 1okr_A 5 TYEISSAEWEVMNIIWMK---KYASANNIIEEIQMQKDWSPKTIRTLIT 50 (123)
T ss_dssp CCCCCHHHHHHHHHHHHH---SSEEHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHhC---CCcCHHHHHHHHhccCCCcHhhHHHHHH
Confidence 346899998888765542 2499999999999 89999994443
No 217
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=68.75 E-value=6.6 Score=31.91 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=21.7
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 007404 562 KTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRqie~R 584 (605)
+|..|+|+.+|||+.+|.++++.
T Consensus 27 lsq~~lA~~~gis~~~is~~e~g 49 (91)
T 1x57_A 27 LTQKDLATKINEKPQVIADYESG 49 (91)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 99999999999999999999873
No 218
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=68.54 E-value=6.6 Score=29.97 Aligned_cols=23 Identities=13% Similarity=0.055 Sum_probs=21.7
Q ss_pred CCHHHHHHHHC--CCHHHHHHHHHH
Q 007404 562 KTLQEIGELMG--VSRERIRQIESS 584 (605)
Q Consensus 562 ~Tl~EIAe~LG--ISrerVRqie~R 584 (605)
+|.+|+|+.+| +|+.+|.++++.
T Consensus 22 lsq~~lA~~~g~~is~~~i~~~e~g 46 (71)
T 2ewt_A 22 LSLHGVEEKSQGRWKAVVVGSYERG 46 (71)
T ss_dssp CCHHHHHHHTTTSSCHHHHHHHHHT
T ss_pred CCHHHHHHHHCCcCCHHHHHHHHCC
Confidence 99999999999 999999999874
No 219
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=68.43 E-value=6.9 Score=35.31 Aligned_cols=52 Identities=13% Similarity=0.139 Sum_probs=35.5
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 007404 531 MKEDLEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES 583 (605)
Q Consensus 531 l~~~L~~aL~--~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~ 583 (605)
+...+...+. .|++.|..||..-+..+ +.+.|..|||+.+|+++.+|.+++.
T Consensus 31 ~~~~~~~~~~~~glt~~q~~vL~~l~~~~-~~~~t~~eLa~~l~~~~~tvs~~l~ 84 (168)
T 3u2r_A 31 MKAIEEEIFSQFELSAQQYNTLRLLRSVH-PEGMATLQIADRLISRAPDITRLID 84 (168)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHT-TSCEEHHHHHHHC---CTHHHHHHH
T ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHhcC-CCCcCHHHHHHHHCCChhhHHHHHH
Confidence 4445555554 49999999888766542 2459999999999999999994443
No 220
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=68.27 E-value=9.9 Score=33.01 Aligned_cols=46 Identities=15% Similarity=0.098 Sum_probs=31.8
Q ss_pred cCCHHHHH-HHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 007404 541 TLNPRERQ-VVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKL 589 (605)
Q Consensus 541 ~L~~rER~-VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKL 589 (605)
.++..++. |+.+.+..+ . .+..+||+.||||+.+|+.++...-..+
T Consensus 7 ~~t~e~K~~iv~~~~~~g-~--~~~~~~A~~~gvs~stl~~~~~~~~~~~ 53 (131)
T 1hlv_A 7 QLTFREKSRIIQEVEENP-D--LRKGEIARRFNIPPSTLSTILKNKRAIL 53 (131)
T ss_dssp CCCHHHHHHHHHHHHHCT-T--SCHHHHHHHHTCCHHHHHHHHHTHHHHH
T ss_pred eCCHHHHHHHHHHHHHCC-C--CcHHHHHHHhCCCHHHHHHHHhchhhhc
Confidence 46777764 555543322 1 4566999999999999999887654433
No 221
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=67.68 E-value=5.7 Score=30.72 Aligned_cols=23 Identities=30% Similarity=0.303 Sum_probs=21.5
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 007404 562 KTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRqie~R 584 (605)
+|..++|+.+|||+.+|.++++.
T Consensus 24 ~s~~~lA~~~gis~~~i~~~e~g 46 (76)
T 3bs3_A 24 RTNRWLAEQMGKSENTISRWCSN 46 (76)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 89999999999999999999874
No 222
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=67.38 E-value=12 Score=35.49 Aligned_cols=44 Identities=18% Similarity=0.222 Sum_probs=34.9
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 541 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
.|++.|..||..-+..+ +.|..|||+.+|+++.+|. +.+++|-+
T Consensus 45 gLt~~q~~iL~~L~~~~---~~t~~eLa~~l~i~~stvs----~~l~~Le~ 88 (207)
T 2fxa_A 45 DLNINEHHILWIAYQLN---GASISEIAKFGVMHVSTAF----NFSKKLEE 88 (207)
T ss_dssp TCCHHHHHHHHHHHHHT---SEEHHHHHHHTTCCHHHHH----HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCC---CcCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 58999999988766543 3999999999999999999 45555543
No 223
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=67.32 E-value=29 Score=29.24 Aligned_cols=37 Identities=16% Similarity=0.235 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHhcCCCHHHHHHHHh
Q 007404 454 VKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLL 490 (605)
Q Consensus 454 i~ka~~~L~~elgr~PT~eEIAe~lgis~e~V~~~l~ 490 (605)
+.++..-+.......++.++||+.+|+|...+....+
T Consensus 9 i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk 45 (113)
T 3oio_A 9 LTEAVSLMEANIEEPLSTDDIAYYVGVSRRQLERLFK 45 (113)
T ss_dssp HHHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3444455555667778999999999999999988865
No 224
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=67.18 E-value=8.6 Score=34.08 Aligned_cols=43 Identities=16% Similarity=0.262 Sum_probs=33.7
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHC----CCHHHHHHHHH
Q 007404 539 LDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMG----VSRERIRQIES 583 (605)
Q Consensus 539 L~~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LG----ISrerVRqie~ 583 (605)
+..|++.|..||..-+..+ .+.|..||++.++ +++.+|..++.
T Consensus 4 ~~~lt~~e~~vL~~L~~~~--~~~t~~el~~~l~~~~~~~~~Tvt~~l~ 50 (138)
T 2g9w_A 4 LTRLGDLERAVMDHLWSRT--EPQTVRQVHEALSARRDLAYTTVMAVLQ 50 (138)
T ss_dssp GGGCCHHHHHHHHHHHTCS--SCEEHHHHHHHHTTTCCCCHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHhcC--CCCCHHHHHHHHhccCCCCHHHHHHHHH
Confidence 3579999999998766422 2599999999998 89999994443
No 225
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=67.03 E-value=5.7 Score=32.66 Aligned_cols=23 Identities=30% Similarity=0.320 Sum_probs=21.6
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 007404 562 KTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRqie~R 584 (605)
+|.+++|+.+|||+.+|++++..
T Consensus 23 lsq~~lA~~~gis~~~is~~e~G 45 (94)
T 2kpj_A 23 KTQLEIAKSIGVSPQTFNTWCKG 45 (94)
T ss_dssp SCHHHHHHHHTCCHHHHHHHHTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHhC
Confidence 99999999999999999999864
No 226
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=67.02 E-value=17 Score=28.54 Aligned_cols=54 Identities=7% Similarity=0.013 Sum_probs=41.0
Q ss_pred cCCHHHHHHHHHHHhcCCCCC----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHh
Q 007404 541 TLNPRERQVVRWRFGLEDGRM----KTLQEIGELMGVSRERIRQIESSAFRKLKNKKR 594 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~~----~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~ 594 (605)
.+|+.+..+|.-.|...-..| ..-.+||..+|+|...|.........|+++.+.
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~ 61 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMI 61 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC-
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHH
Confidence 578889999988887321122 346799999999999999999999999987543
No 227
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=66.94 E-value=10 Score=31.17 Aligned_cols=22 Identities=9% Similarity=0.132 Sum_probs=19.3
Q ss_pred CCCHHHHHHHHCCCHHHHHHHH
Q 007404 561 MKTLQEIGELMGVSRERIRQIE 582 (605)
Q Consensus 561 ~~Tl~EIAe~LGISrerVRqie 582 (605)
..+..|||+.||||..|||..+
T Consensus 16 ~vsv~eLa~~l~VS~~TIRrdL 37 (78)
T 1xn7_A 16 RMEAAQISQTLNTPQPMINAML 37 (78)
T ss_dssp SBCHHHHHHHTTCCHHHHHHHH
T ss_pred CCcHHHHHHHHCcCHHHHHHHH
Confidence 3899999999999999999433
No 228
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=66.91 E-value=30 Score=28.86 Aligned_cols=37 Identities=24% Similarity=0.215 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHcC-CCCCHHHHHHhcCCCHHHHHHHHh
Q 007404 454 VKEARKQLYSENG-RHPNNEEVAEATGLSMKRLHAVLL 490 (605)
Q Consensus 454 i~ka~~~L~~elg-r~PT~eEIAe~lgis~e~V~~~l~ 490 (605)
+.++..-+.+... ..++.++||+.+|+|...+....+
T Consensus 5 i~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk 42 (107)
T 2k9s_A 5 VREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFR 42 (107)
T ss_dssp HHHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 4455555666666 788999999999999999988765
No 229
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=66.89 E-value=9.5 Score=33.14 Aligned_cols=54 Identities=11% Similarity=0.087 Sum_probs=39.2
Q ss_pred HHHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 533 EDLEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 533 ~~L~~aL~--~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
..+...+. .|++.|-.||..-+.. ++.+.|..|||+.+|+++.+|. +.+++|-+
T Consensus 24 ~~~~~~~~~~~lt~~q~~vL~~l~~~-~~~~~t~~eLa~~l~~~~~tvs----~~l~~Le~ 79 (127)
T 2frh_A 24 KLKSLIKKEFSISFEEFAVLTYISEN-KEKEYYLKDIINHLNYKQPQVV----KAVKILSQ 79 (127)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHT-CCSEEEHHHHHHHSSSHHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhc-cCCCcCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 34444554 5999999988876653 2245999999999999999998 45555543
No 230
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=66.64 E-value=6.4 Score=33.20 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=21.7
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 007404 562 KTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRqie~R 584 (605)
+|.+|+|+.+|||+.+|.++++.
T Consensus 42 ltq~elA~~~gis~~~is~iE~G 64 (99)
T 3g5g_A 42 MTQEDLAYKSNLDRTYISGIERN 64 (99)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHCC
Confidence 99999999999999999999874
No 231
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=66.46 E-value=4.9 Score=31.21 Aligned_cols=23 Identities=13% Similarity=0.108 Sum_probs=21.7
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 007404 562 KTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRqie~R 584 (605)
+|.+|+|+.+|||+.+|.++++.
T Consensus 22 lsq~~lA~~~gis~~~is~~e~g 44 (73)
T 3omt_A 22 KTNLWLTETLDKNKTTVSKWCTN 44 (73)
T ss_dssp CCHHHHHHHTTCCHHHHHHHHTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 89999999999999999999874
No 232
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=66.34 E-value=13 Score=27.98 Aligned_cols=51 Identities=6% Similarity=0.061 Sum_probs=39.1
Q ss_pred cCCHHHHHHHHHHHhcCCCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 541 TLNPRERQVVRWRFGLEDGR-MKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~-~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
.+++.+..+|...|..+... .....+||..+|++...|+.....-..|.|+
T Consensus 3 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr 54 (56)
T 3a03_A 3 SFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRR 54 (56)
T ss_dssp -CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhcc
Confidence 46778888888888765321 1346789999999999999998888777775
No 233
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=66.28 E-value=5.8 Score=34.28 Aligned_cols=49 Identities=16% Similarity=0.251 Sum_probs=32.4
Q ss_pred HHHHHhcCC-HHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 535 LEKVLDTLN-PRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 535 L~~aL~~L~-~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
+..++..|. |.-..||.+-. + .++|..|||+.+|+|+.+|+++ +++|++
T Consensus 8 ~~~~~~al~~~~R~~Il~~L~--~--~~~~~~eLa~~l~is~~tvs~h----L~~L~~ 57 (118)
T 3f6o_A 8 LNGIFQALADPTRRAVLGRLS--R--GPATVSELAKPFDMALPSFMKH----IHFLED 57 (118)
T ss_dssp HHHHHHHHTSHHHHHHHHHHH--T--CCEEHHHHHTTCCSCHHHHHHH----HHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHH--h--CCCCHHHHHHHhCcCHHHHHHH----HHHHHH
Confidence 444555555 44445655543 2 2489999999999999999944 555543
No 234
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=66.27 E-value=6.1 Score=34.50 Aligned_cols=50 Identities=12% Similarity=0.266 Sum_probs=36.3
Q ss_pred HHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 535 LEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 535 L~~aL~--~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
+...+. .|++.|..||..-+..+ +.|..+||+.+|+++.+|.. .+++|-+
T Consensus 29 ~~~~~~~~~l~~~~~~iL~~l~~~~---~~~~~~la~~l~~~~~tvs~----~l~~L~~ 80 (147)
T 1z91_A 29 YKPLLDKLNITYPQYLALLLLWEHE---TLTVKKMGEQLYLDSGTLTP----MLKRMEQ 80 (147)
T ss_dssp SHHHHTTTCCCHHHHHHHHHHHHHS---EEEHHHHHHTTTCCHHHHHH----HHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHCC---CCCHHHHHHHHCCCcCcHHH----HHHHHHH
Confidence 344443 48888888887665433 48999999999999999994 5555544
No 235
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=66.17 E-value=6.5 Score=34.58 Aligned_cols=54 Identities=13% Similarity=0.269 Sum_probs=33.0
Q ss_pred HHHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 533 EDLEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 533 ~~L~~aL~--~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
..+...+. .|++.|..||..-+..+ +.+.|..|||+.+|+++.+|. +.+++|-+
T Consensus 28 ~~~~~~~~~~glt~~q~~vL~~l~~~~-~~~~t~~eLa~~l~~~~~~vs----~~l~~L~~ 83 (148)
T 3jw4_A 28 TSADARLAELGLNSQQGRMIGYIYENQ-ESGIIQKDLAQFFGRRGASIT----SMLQGLEK 83 (148)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHT-TTCCCHHHHHHC------CHH----HHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHhCC-CCCCCHHHHHHHHCCChhHHH----HHHHHHHH
Confidence 34444443 59999999988766542 234999999999999999999 44555543
No 236
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=65.88 E-value=4.9 Score=33.30 Aligned_cols=44 Identities=11% Similarity=0.039 Sum_probs=32.1
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHH----HHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 541 TLNPRERQVVRWRFGLEDGRMKTLQEI----GELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~~~Tl~EI----Ae~LGISrerVRqie~RALkKLR~ 591 (605)
.|++.|..||..-+.. .+.|..|| |+.+|+++.+|.+ .+++|-+
T Consensus 5 ~lt~~q~~iL~~l~~~---~~~~~~el~~~la~~l~is~~tvs~----~l~~Le~ 52 (99)
T 1tbx_A 5 PFFYPEAIVLAYLYDN---EGIATYDLYKKVNAEFPMSTATFYD----AKKFLIQ 52 (99)
T ss_dssp SSBCHHHHHHHHHTTC---TTCBHHHHHHHHHTTSCCCHHHHHH----HHHHHHH
T ss_pred CCCHHHHHHHHHHHHc---CCcCHHHHHHHHHHHcCCCHHHHHH----HHHHHHH
Confidence 4777888887765432 34899999 8999999999994 4455543
No 237
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=65.53 E-value=10 Score=31.16 Aligned_cols=52 Identities=17% Similarity=0.147 Sum_probs=41.4
Q ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhH
Q 007404 541 TLNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 592 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg-~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 592 (605)
.+++.+..+|.-.|..+-. ......+||+.+|+|+..|.........|.|+.
T Consensus 9 kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~ 61 (76)
T 2ecc_A 9 RKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHG 61 (76)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHH
Confidence 3677788888888876522 225678999999999999999999999888863
No 238
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=64.94 E-value=10 Score=36.39 Aligned_cols=30 Identities=30% Similarity=0.316 Sum_probs=24.3
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 558 DGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 558 dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
.+.+.+..+||+.||+|+.+|. +++++|.+
T Consensus 17 ~~~~~~~~~lA~~l~vs~~tvs----~~l~~Le~ 46 (214)
T 3hrs_A 17 RHNKITNKEIAQLMQVSPPAVT----EMMKKLLA 46 (214)
T ss_dssp SCSCCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred cCCCcCHHHHHHHHCCChhHHH----HHHHHHHH
Confidence 3456999999999999999999 55555544
No 239
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=64.89 E-value=17 Score=28.45 Aligned_cols=52 Identities=13% Similarity=0.301 Sum_probs=40.3
Q ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhH
Q 007404 541 TLNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 592 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg-~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 592 (605)
.+++.+..+|...|-.+.. ......+||..+|++...|.....+-..|.|+.
T Consensus 13 ~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2da1_A 13 RITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQS 65 (70)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhh
Confidence 3567777888877765532 224678999999999999999999888887763
No 240
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=64.75 E-value=6 Score=32.63 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=19.4
Q ss_pred CCCHHHHHHHHCCCHHH-HHHHH
Q 007404 561 MKTLQEIGELMGVSRER-IRQIE 582 (605)
Q Consensus 561 ~~Tl~EIAe~LGISrer-VRqie 582 (605)
+.|..|||+.+|+++.+ |..++
T Consensus 30 ~~t~~eLa~~l~is~~t~vs~~l 52 (95)
T 2pg4_A 30 EPSLAEIVKASGVSEKTFFMGLK 52 (95)
T ss_dssp CCCHHHHHHHHCCCHHHHHTTHH
T ss_pred CCCHHHHHHHHCCCchHHHHHHH
Confidence 49999999999999999 98443
No 241
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=64.69 E-value=6.2 Score=34.61 Aligned_cols=38 Identities=5% Similarity=0.058 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHH--CCCHHHHHHHH
Q 007404 542 LNPRERQVVRWRFGLEDGRMKTLQEIGELM--GVSRERIRQIE 582 (605)
Q Consensus 542 L~~rER~VL~LRyGl~dg~~~Tl~EIAe~L--GISrerVRqie 582 (605)
+++-.+.||.+---.+ +.|..+||+.+ |+|+.+|++++
T Consensus 11 md~~d~~IL~~L~~~g---~~s~~eLA~~l~~giS~~aVs~rL 50 (111)
T 3b73_A 11 MTIWDDRILEIIHEEG---NGSPKELEDRDEIRISKSSVSRRL 50 (111)
T ss_dssp CCHHHHHHHHHHHHHS---CBCHHHHHTSTTCCSCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcC---CCCHHHHHHHHhcCCCHHHHHHHH
Confidence 6777788887643222 59999999999 99999999554
No 242
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=64.66 E-value=5.7 Score=38.22 Aligned_cols=29 Identities=31% Similarity=0.653 Sum_probs=25.5
Q ss_pred CCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 559 GRMK-TLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 559 g~~~-Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
|..+ |-.|+|+.||||+.+|| .||++|..
T Consensus 28 G~~LPsE~eLa~~~gVSR~tVR----eAL~~L~~ 57 (239)
T 1hw1_A 28 GTILPAERELSELIGVTRTTLR----EVLQRLAR 57 (239)
T ss_dssp TSBCCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCCCCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 4557 89999999999999999 88888875
No 243
>2hwv_A DNA-binding response regulator VICR; essential response regulator, C-terminal domain, DNA-binding transcription; 1.90A {Enterococcus faecalis}
Probab=64.52 E-value=15 Score=32.05 Aligned_cols=49 Identities=12% Similarity=0.063 Sum_probs=39.7
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHH
Q 007404 541 TLNPRERQVVRWRFGLEDGRMKTLQEIGELM-----GVSRERIRQIESSAFRKLK 590 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~L-----GISrerVRqie~RALkKLR 590 (605)
.|+++|..+|.+-. ...|...|.++|.+.+ ..+..+|++.+.+-.+||.
T Consensus 43 ~Lt~~E~~LL~~L~-~~~g~vvsre~L~~~vW~~~~~~~~~tl~~~I~rLRkkL~ 96 (121)
T 2hwv_A 43 ELTHREFELLYYLA-KHIGQVMTREHLLQTVWGYDYFGDVRTVDVTVRRLREKIE 96 (121)
T ss_dssp ECCHHHHHHHHHHH-HTTTCCBCHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHHC
T ss_pred ECCHHHHHHHHHHH-HcCCeEEcHHHHHHHHcCCCCCCCccHHHHHHHHHHHHHh
Confidence 58999999987654 4567889999999998 6788899987777777764
No 244
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=64.43 E-value=7 Score=34.36 Aligned_cols=31 Identities=3% Similarity=0.035 Sum_probs=25.3
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 007404 550 VRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 550 L~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~R 584 (605)
-.+|--.+ +|.+|+|+.+|||+.+|.++++.
T Consensus 46 ~~~R~~~g----lTQ~eLA~~lGis~~~Is~iE~G 76 (120)
T 2o38_A 46 NAVIDRAR----LSQAAAAARLGINQPKVSALRNY 76 (120)
T ss_dssp HHHHHHTT----CCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHcC----CCHHHHHHHHCcCHHHHHHHHcC
Confidence 33444445 99999999999999999999873
No 245
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=64.40 E-value=5.7 Score=38.84 Aligned_cols=30 Identities=40% Similarity=0.611 Sum_probs=26.1
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 558 DGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 558 dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
.|..++..++|+.||||+.+|| +||++|..
T Consensus 46 pG~~L~e~~La~~lgVSr~~VR----eAL~~L~~ 75 (237)
T 3c7j_A 46 SGTALRQQELATLFGVSRMPVR----EALRQLEA 75 (237)
T ss_dssp TTCBCCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred CcCeeCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 3455899999999999999999 88888865
No 246
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=64.12 E-value=5.9 Score=40.91 Aligned_cols=40 Identities=15% Similarity=0.266 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 007404 544 PRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 544 ~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~R 584 (605)
+..++||.+-. ..+|.+.|-+|||+.||||+.+|++.++.
T Consensus 3 ~~~~~iL~~L~-~~~g~~~Sg~eLa~~lgvSr~aV~k~i~~ 42 (323)
T 3rkx_A 3 KYSQDVLQLLY-KNKPNYISGQSIAESLNISRTAVKKVIDQ 42 (323)
T ss_dssp CHHHHHHHHHH-HHTTSCBCHHHHHHHHTSCHHHHHHHHHH
T ss_pred hHHHHHHHHHH-hCCCCccCHHHHHHHHCCCHHHHHHHHHH
Confidence 34556776643 23456799999999999999999988865
No 247
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=64.06 E-value=5.1 Score=38.25 Aligned_cols=37 Identities=22% Similarity=0.397 Sum_probs=29.2
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 549 VVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 549 VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
|+.-.|. .|..++-.++|+.||||+..|| .||++|..
T Consensus 25 I~~g~l~--pG~~L~e~~La~~lgVSRtpVR----EAL~~L~~ 61 (218)
T 3sxy_A 25 ILNHELK--LGEKLNVRELSEKLGISFTPVR----DALLQLAT 61 (218)
T ss_dssp HHTTSSC--TTCEECHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred HHhCCCC--CCCEeCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 4444332 3456899999999999999999 88988875
No 248
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=63.69 E-value=1.6 Score=37.02 Aligned_cols=29 Identities=24% Similarity=0.424 Sum_probs=23.9
Q ss_pred CCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 559 GRMK-TLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 559 g~~~-Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
|..+ |..|||+.||||+.+|+ ++++.|..
T Consensus 32 g~~lps~~eLa~~~~vSr~tvr----~al~~L~~ 61 (102)
T 1v4r_A 32 GDTLPSVADIRAQFGVAAKTVS----RALAVLKS 61 (102)
T ss_dssp TSBCCCHHHHHHHSSSCTTHHH----HHTTTTTT
T ss_pred cCCCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 3446 99999999999999999 67776654
No 249
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=63.30 E-value=25 Score=28.71 Aligned_cols=55 Identities=9% Similarity=0.114 Sum_probs=42.3
Q ss_pred cCCHHHHHHHHHHHhcCCCCC----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHhh
Q 007404 541 TLNPRERQVVRWRFGLEDGRM----KTLQEIGELMGVSRERIRQIESSAFRKLKNKKRT 595 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~~----~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~ 595 (605)
.+++.+..+|.-.|..+...+ ....+||..+|++...|..+......|.|+....
T Consensus 7 ~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 7 NFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp CCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccc
Confidence 467888899998884221112 2457899999999999999999999999886544
No 250
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=63.25 E-value=8.5 Score=34.81 Aligned_cols=30 Identities=20% Similarity=0.181 Sum_probs=24.7
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 558 DGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 558 dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
++.+.|.+|||+.+|+|+..|+ +.+.+|++
T Consensus 25 ~~~~~s~~~IA~~~~i~~~~l~----kil~~L~~ 54 (143)
T 3t8r_A 25 GQGCISLKSIAEENNLSDLYLE----QLVGPLRN 54 (143)
T ss_dssp TSCCEEHHHHHHHTTCCHHHHH----HHHHHHHH
T ss_pred CCCCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 3457999999999999999999 55666665
No 251
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=63.23 E-value=97 Score=28.81 Aligned_cols=29 Identities=24% Similarity=0.478 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhH
Q 007404 560 RMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 592 (605)
Q Consensus 560 ~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 592 (605)
.+.|.+||+...|+|+.+|++ .++.|.+.
T Consensus 164 ~~~t~~ei~~~~~vs~~ti~~----~~~~l~~~ 192 (200)
T 1ais_B 164 EKRTQREVAEVARVTEVTVRN----RYKELVEK 192 (200)
T ss_dssp CCCCHHHHHHHHTCCHHHHHH----HHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHH----HHHHHHHH
Confidence 458999999999999999994 44444443
No 252
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=63.21 E-value=7.9 Score=32.65 Aligned_cols=21 Identities=5% Similarity=0.110 Sum_probs=18.9
Q ss_pred CCCHHHHHHHHCCCHHHHHHH
Q 007404 561 MKTLQEIGELMGVSRERIRQI 581 (605)
Q Consensus 561 ~~Tl~EIAe~LGISrerVRqi 581 (605)
..+..|||+.||||..|||..
T Consensus 16 ~vsv~eLA~~l~VS~~TIRrD 36 (87)
T 2k02_A 16 RMEAKQLSARLQTPQPLIDAM 36 (87)
T ss_dssp SEEHHHHHHHTTCCHHHHHHH
T ss_pred CCcHHHHHHHHCcCHHHHHHH
Confidence 389999999999999999943
No 253
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=62.97 E-value=6.6 Score=33.60 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=21.4
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 007404 562 KTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRqie~R 584 (605)
+|.+|+|+.+|||+.+|++++..
T Consensus 35 ltq~elA~~~gis~~~is~~E~G 57 (114)
T 3vk0_A 35 WSQEELARQCGLDRTYVSAVERK 57 (114)
T ss_dssp CCHHHHHHHHTCCHHHHHHHTTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 99999999999999999999864
No 254
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=62.77 E-value=9.9 Score=31.16 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=22.7
Q ss_pred CCCCCHHHHHHhcCCCHHHHHHHHh
Q 007404 466 GRHPNNEEVAEATGLSMKRLHAVLL 490 (605)
Q Consensus 466 gr~PT~eEIAe~lgis~e~V~~~l~ 490 (605)
|..||..|||+.+|+|...|+..|.
T Consensus 22 g~~psv~EIa~~lgvS~~TVrr~L~ 46 (77)
T 2jt1_A 22 GAPVKTRDIADAAGLSIYQVRLYLE 46 (77)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHH
Confidence 7889999999999999999988765
No 255
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=62.57 E-value=6.4 Score=35.27 Aligned_cols=26 Identities=15% Similarity=0.373 Sum_probs=22.4
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 562 KTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
.|..+||+.||||+.+|+ +++++|.+
T Consensus 55 ~~~~~la~~l~vs~~tvs----~~l~~Le~ 80 (155)
T 2h09_A 55 ARQVDMAARLGVSQPTVA----KMLKRLAT 80 (155)
T ss_dssp CCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred cCHHHHHHHhCcCHHHHH----HHHHHHHH
Confidence 899999999999999999 56666654
No 256
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=62.55 E-value=4.4 Score=38.58 Aligned_cols=27 Identities=30% Similarity=0.437 Sum_probs=24.4
Q ss_pred CCCHHHHHHHHCCCH-HHHHHHHHHHHHHHHh
Q 007404 561 MKTLQEIGELMGVSR-ERIRQIESSAFRKLKN 591 (605)
Q Consensus 561 ~~Tl~EIAe~LGISr-erVRqie~RALkKLR~ 591 (605)
++|.++||..+|+|+ ++|. |++++|++
T Consensus 169 ~~t~~~lA~~lG~sr~etvs----R~l~~l~~ 196 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVS----RIISKLKQ 196 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHH----HHHHHHHH
T ss_pred cCCHHHHHHHhCCChHHHHH----HHHHHHHH
Confidence 689999999999999 7999 88888876
No 257
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=62.42 E-value=10 Score=34.33 Aligned_cols=30 Identities=20% Similarity=0.179 Sum_probs=24.9
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 558 DGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 558 dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
++.+.|.+|||+.+|||+..|+ +.+.+|++
T Consensus 27 ~~~~~~~~~iA~~~~i~~~~l~----kil~~L~~ 56 (149)
T 1ylf_A 27 PSSLCTSDYMAESVNTNPVVIR----KIMSYLKQ 56 (149)
T ss_dssp CGGGCCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred CCCCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 4567999999999999999999 55666665
No 258
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=62.37 E-value=12 Score=34.63 Aligned_cols=47 Identities=15% Similarity=0.182 Sum_probs=31.5
Q ss_pred cCCHHHHHHHHHHHhc---CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 541 TLNPRERQVVRWRFGL---EDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl---~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
+|+.+.+.-|+.-..+ .++.+.|.+|||+.+|+|+..|+ +.+.+|++
T Consensus 21 ~lS~~~~yAlr~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~----kil~~L~~ 70 (159)
T 3lwf_A 21 KITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLE----QLIGPLRN 70 (159)
T ss_dssp CCCHHHHHHHHHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred eCchHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 3555554433332221 24567999999999999999999 55666665
No 259
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein STRU initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=62.36 E-value=7.4 Score=36.85 Aligned_cols=33 Identities=18% Similarity=0.323 Sum_probs=27.7
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 007404 548 QVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 548 ~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~R 584 (605)
.+-.+|-..+ +|++|+|+.+|||+.+|.++++-
T Consensus 94 ~lk~lR~~~g----lTQ~elA~~LGvsr~tis~yE~G 126 (170)
T 2auw_A 94 MFGDWMHRNN----LSLTTAAEALGISRRMVSYYRTA 126 (170)
T ss_dssp HHHHHHHHTT----CCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHHHHHHHcC----CCHHHHHHHhCCCHHHHHHHHcC
Confidence 4556665555 99999999999999999999873
No 260
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=62.35 E-value=9.3 Score=39.17 Aligned_cols=39 Identities=21% Similarity=0.391 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 007404 543 NPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 543 ~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~R 584 (605)
.++...||.+- .++...|.+|||+.||||+.+|++.+..
T Consensus 4 ~~r~~~Il~~L---~~~~~~s~~eLa~~l~vS~~ti~r~l~~ 42 (321)
T 1bia_A 4 NTVPLKLIALL---ANGEFHSGEQLGETLGMSRAAINKHIQT 42 (321)
T ss_dssp CHHHHHHHHHH---TTSSCBCHHHHHHHHTSCHHHHHHHHHH
T ss_pred chHHHHHHHHH---HcCCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 45666777654 2445699999999999999999998875
No 261
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=62.33 E-value=8.2 Score=33.56 Aligned_cols=30 Identities=17% Similarity=0.254 Sum_probs=25.5
Q ss_pred HHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 007404 551 RWRFGLEDGRMKTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 551 ~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~R 584 (605)
.+|-..+ +|++|+|+.+|||+.+|.+++.-
T Consensus 14 ~~R~~~g----lSq~eLA~~~gis~~~is~iE~G 43 (112)
T 2wus_R 14 KKREERR----ITLLDASLFTNINPSKLKRIEEG 43 (112)
T ss_dssp HHHHTTT----CCHHHHHHHSSCCHHHHHHHHHT
T ss_pred HHHHHcC----CCHHHHHHHHCcCHHHHHHHHCC
Confidence 3454455 99999999999999999999975
No 262
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=62.32 E-value=6.1 Score=30.92 Aligned_cols=25 Identities=20% Similarity=0.081 Sum_probs=22.0
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHH
Q 007404 561 MKTLQEIGELMGVSRERIRQIESSA 585 (605)
Q Consensus 561 ~~Tl~EIAe~LGISrerVRqie~RA 585 (605)
-++.+|+++.+|||+.||.....+.
T Consensus 10 ~l~~~eva~~lgvsrstiy~~~~~g 34 (66)
T 1z4h_A 10 LVDLKFIMADTGFGKTFIYDRIKSG 34 (66)
T ss_dssp EECHHHHHHHHSSCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHCcCHHHHHHHHHCC
Confidence 3799999999999999999887753
No 263
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=62.19 E-value=8.9 Score=32.52 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=21.7
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 007404 562 KTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRqie~R 584 (605)
+|.+++|+.+|||+.+|+++++.
T Consensus 23 lsq~~lA~~~gis~~~i~~~e~g 45 (114)
T 3op9_A 23 LKNHQIAELLNVQTRTVAYYMSG 45 (114)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 99999999999999999999874
No 264
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=62.12 E-value=7.9 Score=31.31 Aligned_cols=23 Identities=9% Similarity=0.286 Sum_probs=21.7
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 007404 562 KTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRqie~R 584 (605)
+|.+++|+.+|||+.+|.++++.
T Consensus 31 lsq~~lA~~~gis~~~is~~e~g 53 (92)
T 1lmb_3 31 LSQESVADKMGMGQSGVGALFNG 53 (92)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 89999999999999999999874
No 265
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=62.05 E-value=20 Score=29.45 Aligned_cols=55 Identities=15% Similarity=0.033 Sum_probs=41.7
Q ss_pred cCCHHHHHHHHHHHhcCCCCC----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHhh
Q 007404 541 TLNPRERQVVRWRFGLEDGRM----KTLQEIGELMGVSRERIRQIESSAFRKLKNKKRT 595 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~~----~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~ 595 (605)
.++..+..+|.-.|...-..| ..-.+||..+|+|...|.........|.++.+..
T Consensus 13 ~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~ 71 (83)
T 2dmn_A 13 NLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQ 71 (83)
T ss_dssp SCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTC
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHH
Confidence 367777788877665431112 3567899999999999999999999999886643
No 266
>2k4j_A Putative transcriptional regulator; response regulator, acid resistance, DN binding, phosphoprotein, transcription regul; NMR {Helicobacter pylori}
Probab=61.90 E-value=12 Score=32.46 Aligned_cols=50 Identities=16% Similarity=0.133 Sum_probs=40.5
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHh
Q 007404 541 TLNPRERQVVRWRFGLEDGRMKTLQEIGELM-----GVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~L-----GISrerVRqie~RALkKLR~ 591 (605)
.|+++|..+|.+-. ...|...|.++|.+.+ ..+..+|++.+.+-.+||..
T Consensus 41 ~Lt~~E~~LL~~L~-~~~g~vvsre~L~~~vW~~~~~~~~~tl~~~I~rLRkkL~~ 95 (115)
T 2k4j_A 41 DLTRAEYEILSLLI-SKKGYVFSRESIAIESESINPESSNKSIDVIIGRLRSKIEK 95 (115)
T ss_dssp CSCHHHHHHHHHHH-HHCCCEECHHHHHHHTCCSSCTTCHHHHHHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHHH-HcCCcEEcHHHHHHHHcCCCCCCchhHHHHHHHHHHHHhhc
Confidence 58999999988754 4467889999999999 57888999887777777754
No 267
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=61.85 E-value=18 Score=31.20 Aligned_cols=42 Identities=21% Similarity=0.235 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHh
Q 007404 545 RERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKR 594 (605)
Q Consensus 545 rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~ 594 (605)
|+--+...|-..+ +|+.+||+.||-...||- .|.+|+.+.+.
T Consensus 38 RqiAmYL~r~~t~----~Sl~~IG~~fgRDHsTV~----ha~~ki~~~~~ 79 (101)
T 3pvv_A 38 RQIAMYLCRELTD----LSLPKIGQAFGRDHTTVM----YAQRKILSEMA 79 (101)
T ss_dssp HHHHHHHHHHHCC----CCHHHHHHHTTCCHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC----CCHHHHHHHHCCCHHHHH----HHHHHHHHHHH
Confidence 4433444444455 999999999999999998 56666666544
No 268
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=61.64 E-value=10 Score=32.55 Aligned_cols=42 Identities=19% Similarity=0.160 Sum_probs=33.0
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHC----CCHHHHHHHHHH
Q 007404 540 DTLNPRERQVVRWRFGLEDGRMKTLQEIGELMG----VSRERIRQIESS 584 (605)
Q Consensus 540 ~~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LG----ISrerVRqie~R 584 (605)
..|++.|..||..-+-.+ +.|..||++.++ +++.||..++.|
T Consensus 6 ~~Lt~~q~~vL~~L~~~~---~~t~~el~~~l~~~~~~~~~Tvt~~l~r 51 (126)
T 1sd4_A 6 VEISMAEWDVMNIIWDKK---SVSANEIVVEIQKYKEVSDKTIRTLITR 51 (126)
T ss_dssp CCCCHHHHHHHHHHHHSS---SEEHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhcC---CCCHHHHHHHHhhcCCCChhhHHHHHHH
Confidence 368999999988766533 499999999997 589999955443
No 269
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=61.64 E-value=9.1 Score=32.87 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=21.7
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 007404 562 KTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRqie~R 584 (605)
+|.+|+|+.+|||+.+|.+++..
T Consensus 37 ltq~elA~~~gis~~~is~~E~G 59 (111)
T 3mlf_A 37 LTQKELGDLFKVSSRTIQNMEKD 59 (111)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHC
T ss_pred CCHHHHHHHHCcCHHHHHHHHCC
Confidence 99999999999999999999874
No 270
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=61.61 E-value=10 Score=31.01 Aligned_cols=23 Identities=13% Similarity=0.274 Sum_probs=21.4
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 007404 562 KTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRqie~R 584 (605)
+|..++|+.+|||+.+|+++++.
T Consensus 22 ltq~~lA~~~gis~~~is~~e~g 44 (94)
T 2ict_A 22 VSLREFARAMEIAPSTASRLLTG 44 (94)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHT
T ss_pred CCHHHHHHHhCCCHHHHHHHHcC
Confidence 89999999999999999999874
No 271
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=61.51 E-value=8.1 Score=33.46 Aligned_cols=40 Identities=10% Similarity=0.274 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 544 PRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 544 ~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
+....||.+-. ++ +.+..|||+.+|+|+.+|+ +.+++|++
T Consensus 21 ~~r~~IL~~L~--~~--~~~~~eLa~~lgis~stvs----~~L~~L~~ 60 (118)
T 2jsc_A 21 PTRCRILVALL--DG--VCYPGQLAAHLGLTRSNVS----NHLSCLRG 60 (118)
T ss_dssp HHHHHHHHHHH--TT--CCSTTTHHHHHSSCHHHHH----HHHHHHTT
T ss_pred HHHHHHHHHHH--cC--CCCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 44556666533 22 4899999999999999999 45555554
No 272
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=61.51 E-value=3.4 Score=32.93 Aligned_cols=23 Identities=13% Similarity=0.146 Sum_probs=20.5
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHH
Q 007404 561 MKTLQEIGELMGVSRERIRQIES 583 (605)
Q Consensus 561 ~~Tl~EIAe~LGISrerVRqie~ 583 (605)
..|++|||+..|||+.||..+++
T Consensus 9 ~~t~~diA~~aGVS~sTVSr~ln 31 (67)
T 2l8n_A 9 AATMKDVALKAKVSTATVSRALM 31 (67)
T ss_dssp CCCHHHHHHHTTCCHHHHHHTTT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHc
Confidence 36999999999999999998764
No 273
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=61.43 E-value=8.2 Score=33.03 Aligned_cols=23 Identities=9% Similarity=0.310 Sum_probs=20.8
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 007404 562 KTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRqie~R 584 (605)
+|..|+|+.+|||+.+|.++++.
T Consensus 28 ltq~eLA~~lGis~~~is~ie~G 50 (104)
T 3trb_A 28 MSANQLAKHLAIPTNRVTAILNG 50 (104)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 89999999999999999998873
No 274
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=61.12 E-value=5.3 Score=33.79 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=21.6
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHH
Q 007404 562 KTLQEIGELMGVSRERIRQIESSA 585 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRqie~RA 585 (605)
.|+.+||..+|||..+|+++..+.
T Consensus 31 ~s~~~va~~~gIs~~tl~~W~~~~ 54 (108)
T 2rn7_A 31 ATICSIAPKIGCTPETLRVWVRQH 54 (108)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred ccHHHHHHHHCcCHHHHHHHHHHH
Confidence 699999999999999999887664
No 275
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=60.56 E-value=7.1 Score=31.60 Aligned_cols=22 Identities=14% Similarity=0.148 Sum_probs=20.0
Q ss_pred CHHHHHHHHCCCHHHHHHHHHH
Q 007404 563 TLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 563 Tl~EIAe~LGISrerVRqie~R 584 (605)
+..++|+.||||+.+|++++..
T Consensus 12 ~~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 12 DVEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp SHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHhC
Confidence 5899999999999999999764
No 276
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=60.36 E-value=10 Score=29.26 Aligned_cols=33 Identities=15% Similarity=0.229 Sum_probs=22.8
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHH
Q 007404 546 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQI 581 (605)
Q Consensus 546 ER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqi 581 (605)
|+.+|..-.-..+ -...+.|+.||||+.++...
T Consensus 20 E~~~i~~aL~~~~---gn~~~aA~~LGisr~tL~rk 52 (63)
T 3e7l_A 20 EKIFIEEKLREYD---YDLKRTAEEIGIDLSNLYRK 52 (63)
T ss_dssp HHHHHHHHHHHTT---TCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHhC---CCHHHHHHHHCcCHHHHHHH
Confidence 4555544443333 37889999999999999843
No 277
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=60.35 E-value=8.3 Score=31.63 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=21.6
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 007404 562 KTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRqie~R 584 (605)
+|..++|+.+|||+.+|.++++.
T Consensus 18 ltq~~lA~~~gis~~~is~~e~g 40 (99)
T 2l49_A 18 LSRQQLADLTGVPYGTLSYYESG 40 (99)
T ss_dssp CCHHHHHHHHCCCHHHHHHHTTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 89999999999999999998874
No 278
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=60.32 E-value=8.4 Score=34.74 Aligned_cols=32 Identities=25% Similarity=0.318 Sum_probs=25.9
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 007404 549 VVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 549 VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~R 584 (605)
|-.+|-..+ +|.+|+|+.+|||+.+|+++++.
T Consensus 73 L~~~R~~~g----lTq~elA~~lGis~s~is~~E~G 104 (141)
T 3kxa_A 73 FVSLRMKKG----FTQSELATAAGLPQPYLSRIENS 104 (141)
T ss_dssp HHHHHHHTT----CCHHHHHHHTTCCHHHHHHHHHT
T ss_pred HHHHHHHcC----CCHHHHHHHHCcCHHHHHHHHcC
Confidence 333454455 99999999999999999999974
No 279
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=59.85 E-value=4.6 Score=39.19 Aligned_cols=45 Identities=20% Similarity=0.289 Sum_probs=31.9
Q ss_pred cCCHHHHHHHHHHHhcC-CCCCCCH--HHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 541 TLNPRERQVVRWRFGLE-DGRMKTL--QEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~-dg~~~Tl--~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
.|++.+..+|..-|.+. +| .|. .+||+.||+|+.+|+ +++++|-+
T Consensus 3 ~lt~~~e~~L~~L~~l~~~~--~~~~~~~La~~l~vs~~tvs----~~l~~Le~ 50 (230)
T 1fx7_A 3 ELVDTTEMYLRTIYDLEEEG--VTPLRARIAERLDQSGPTVS----QTVSRMER 50 (230)
T ss_dssp TTSSHHHHHHHHHHHHHHHT--SCCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcC--CCCcHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 47777777776655442 22 555 999999999999999 55555543
No 280
>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A
Probab=59.81 E-value=6.1 Score=35.09 Aligned_cols=35 Identities=14% Similarity=0.094 Sum_probs=27.1
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHC-----CCHHHHHHHHH
Q 007404 548 QVVRWRFGLEDGRMKTLQEIGELMG-----VSRERIRQIES 583 (605)
Q Consensus 548 ~VL~LRyGl~dg~~~Tl~EIAe~LG-----ISrerVRqie~ 583 (605)
.++...+.. ++.++|++|+|+.+| ||+..|.++++
T Consensus 12 ~L~~~~~~~-~~~~lT~~elA~~~~~~G~~iS~s~is~iE~ 51 (123)
T 3qwg_A 12 RLFDTVYPP-GRGPHTSAEVIAALKAEGITMSAPYLSQLRS 51 (123)
T ss_dssp HHHHHSSCT-TTCSCCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHhhccC-CCCCCCHHHHHHHHcccCCCcCHHHHHHHHc
Confidence 344433332 456799999999998 99999999996
No 281
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=59.73 E-value=32 Score=25.95 Aligned_cols=51 Identities=20% Similarity=0.178 Sum_probs=39.3
Q ss_pred cCCHHHHHHHHHHHhc---CCCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 541 TLNPRERQVVRWRFGL---EDGR-MKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl---~dg~-~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
.+++.+..+|.-.|.. +... .....+||..+|+|...|.........|.|+
T Consensus 4 ~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 4 RFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp SCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHccccc
Confidence 4678888899888876 3211 1235689999999999999999888887764
No 282
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=59.68 E-value=10 Score=31.67 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=21.8
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 007404 562 KTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRqie~R 584 (605)
+|..++|+.+|||+.+|.++++.
T Consensus 15 ltq~~lA~~~gis~~~i~~~e~g 37 (111)
T 1b0n_A 15 YSLSELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 99999999999999999999875
No 283
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=59.61 E-value=4 Score=31.48 Aligned_cols=21 Identities=19% Similarity=0.378 Sum_probs=19.8
Q ss_pred CCHHHHHHHHCCCHHHHHHHH
Q 007404 562 KTLQEIGELMGVSRERIRQIE 582 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRqie 582 (605)
.|..++|+.+|||+.+|++++
T Consensus 11 ~tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 11 GTQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp SSHHHHHHHHTCCHHHHHHCC
T ss_pred CCHHHHHHHhCCCHHHHHHHH
Confidence 589999999999999999996
No 284
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=59.41 E-value=12 Score=36.33 Aligned_cols=45 Identities=20% Similarity=0.214 Sum_probs=32.8
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 541 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
.+++...+.|..-|.++ .+.+..+||+.||+|+.+|+ .++++|++
T Consensus 12 ~ls~s~EdYLk~I~~L~--~~V~~~~LA~~LgvS~~SV~----~~lkkL~e 56 (200)
T 2p8t_A 12 YPEYTVEDVLAVIFLLK--EPLGRKQISERLELGEGSVR----TLLRKLSH 56 (200)
T ss_dssp --CCCHHHHHHHHHHTT--SCBCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc--CCccHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 34554555555555553 45899999999999999999 77888876
No 285
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=59.37 E-value=12 Score=35.37 Aligned_cols=41 Identities=27% Similarity=0.184 Sum_probs=31.8
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 007404 540 DTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES 583 (605)
Q Consensus 540 ~~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~ 583 (605)
..|+|-|+-....+....| +|.++||+.+|+|+.+|++++.
T Consensus 34 edL~piE~A~a~~~L~~~G---~t~eeiA~~lG~s~s~V~~~Lr 74 (178)
T 1r71_A 34 NELTPREIADFIGRELAKG---KKKGDIAKEIGKSPAFITQHVT 74 (178)
T ss_dssp TCCCHHHHHHHHHHHHHTT---CCHHHHHHHHTCCHHHHHHHHG
T ss_pred CCCCHHHHHHHHHHHHHcC---CCHHHHHHHHCcCHHHHHHHHH
Confidence 3588888776655554332 8999999999999999997754
No 286
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=59.28 E-value=4.8 Score=36.71 Aligned_cols=43 Identities=12% Similarity=-0.051 Sum_probs=1.4
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHH
Q 007404 540 DTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIE 582 (605)
Q Consensus 540 ~~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie 582 (605)
..++.++|-.-.+...-+-..+.|.++||..+|+|+++|..+.
T Consensus 147 ~~~~~~~Rl~~~L~~~~~~~~~~t~~~iA~~lG~sretlsR~l 189 (194)
T 3dn7_A 147 HMYSKEEQYHNFSSRFPEFIQRVPQYLLASYLGFTPEYLSEIR 189 (194)
T ss_dssp HHC----------------------------------------
T ss_pred hcCCHHHHHHHHHHHChHHHHHCCHHHHHHHhCCCHHHHHHHH
Confidence 3456666543322211122245899999999999999999443
No 287
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=59.07 E-value=19 Score=27.29 Aligned_cols=51 Identities=12% Similarity=0.014 Sum_probs=39.0
Q ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 541 TLNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg-~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
.+++.+..+|...|..+.. ......+||..+|+|...|.....+-..|.|+
T Consensus 7 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 58 (60)
T 1jgg_A 7 AFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKR 58 (60)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhc
Confidence 3677788888888866532 11356789999999999999999888777764
No 288
>3rjp_A COVR; winged helix-turn-helix, DNA binding, DNA binding protein; 1.50A {Streptococcus pyogenes}
Probab=59.01 E-value=20 Score=29.42 Aligned_cols=50 Identities=16% Similarity=0.108 Sum_probs=39.2
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHh
Q 007404 541 TLNPRERQVVRWRFGLEDGRMKTLQEIGELM-----GVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~L-----GISrerVRqie~RALkKLR~ 591 (605)
.|+++|..+|.+-. .+.|...|.++|.+.+ ..+..+|++.+.+-.+||..
T Consensus 22 ~Lt~~E~~lL~~L~-~~~g~~vsr~~L~~~vw~~~~~~~~~~l~~~I~rLRkkL~~ 76 (96)
T 3rjp_A 22 SLTKREYDLLNILM-TNMNRVMTREELLSNVWKYDEAVETNVVDVYIRYLRGKIDI 76 (96)
T ss_dssp ECCHHHHHHHHHHH-HTTTSCBCHHHHHHHHSSSCSSCCTHHHHHHHHHHHHHHCC
T ss_pred EcCHHHHHHHHHHH-hCCCeeEcHHHHHHHHcCCCCCCCcchHHHHHHHHHHHhcc
Confidence 58999999998754 4567889999999988 26788888777766666653
No 289
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=58.68 E-value=18 Score=27.16 Aligned_cols=51 Identities=8% Similarity=0.114 Sum_probs=38.7
Q ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 541 TLNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg-~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
.+++.+..+|...|..+.. ......+||..+|+|...|.....+-..|.|+
T Consensus 6 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 6 PFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 3577788888888866532 11346789999999999999999888777664
No 290
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=58.50 E-value=27 Score=27.25 Aligned_cols=53 Identities=17% Similarity=0.194 Sum_probs=41.6
Q ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHH
Q 007404 541 TLNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 593 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg-~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l 593 (605)
.+++.+..+|...|..+.. ......+||..+|++...|......-..|.|+..
T Consensus 9 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 62 (68)
T 1yz8_P 9 HFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRE 62 (68)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHh
Confidence 3677788888888866532 2245679999999999999999998888888754
No 291
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=58.36 E-value=9.1 Score=37.03 Aligned_cols=37 Identities=30% Similarity=0.413 Sum_probs=28.4
Q ss_pred HHHHHHhcCCCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 549 VVRWRFGLEDGRMK-TLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 549 VL~LRyGl~dg~~~-Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
|+.-.|. .|..+ +-.++|+.||||+..|| .||++|..
T Consensus 17 I~~g~l~--pG~~LpsE~~La~~lgVSRtpVR----EAL~~L~~ 54 (239)
T 2di3_A 17 LRSGRLK--IGDHLPSERALSETLGVSRSSLR----EALRVLEA 54 (239)
T ss_dssp HHHTSSC--TTCBCCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred HHhCCCC--CCCcCCCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 4444332 34557 67899999999999999 88988875
No 292
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=58.22 E-value=5.6 Score=36.88 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=20.4
Q ss_pred CCHHHHHHHHCCCHHHHHHHHH
Q 007404 562 KTLQEIGELMGVSRERIRQIES 583 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRqie~ 583 (605)
+|+.|+|+.||||+.+|+++++
T Consensus 32 LTv~EVAe~LgVs~srV~~LIr 53 (148)
T 2kfs_A 32 YDLPRVAELLGVPVSKVAQQLR 53 (148)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHH
T ss_pred EcHHHHHHHhCCCHHHHHHHHH
Confidence 8999999999999999998765
No 293
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=58.18 E-value=7.1 Score=37.35 Aligned_cols=37 Identities=22% Similarity=0.322 Sum_probs=29.2
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 549 VVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 549 VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
|+.-.|- -|..++-.++|+.||||+..|| .||++|..
T Consensus 29 I~~g~l~--pG~~L~E~~La~~lgVSRtpVR----EAl~~L~~ 65 (222)
T 3ihu_A 29 LELGTFV--PGQRLVETDLVAHFGVGRNSVR----EALQRLAA 65 (222)
T ss_dssp HHHTSSC--TTCEECHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred HHhCCCC--CCCccCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 5544443 3456889999999999999999 88888875
No 294
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=58.10 E-value=19 Score=27.42 Aligned_cols=51 Identities=12% Similarity=0.179 Sum_probs=38.9
Q ss_pred cCCHHHHHHHHHHHhcCCCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 541 TLNPRERQVVRWRFGLEDGR-MKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~-~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
.+++.+..+|...|..+... .....+||..+|++...|.....+-..|.|+
T Consensus 9 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 9 AFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 36777888888888765321 1346789999999999999998887777664
No 295
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=58.10 E-value=5.3 Score=37.36 Aligned_cols=27 Identities=30% Similarity=0.567 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 561 MKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 561 ~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
+.|.++||..+|+|+++|. |++++|++
T Consensus 164 ~~t~~~lA~~lg~sr~tvs----R~l~~L~~ 190 (213)
T 1o5l_A 164 PVTLEELSRLFGCARPALS----RVFQELER 190 (213)
T ss_dssp -------------------------------
T ss_pred CCCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 5899999999999999999 77777775
No 296
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=57.97 E-value=7.1 Score=38.09 Aligned_cols=38 Identities=26% Similarity=0.392 Sum_probs=29.4
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 548 QVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 548 ~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
.|+.-.|- .|..++-.++|+.||||+.+|| .||++|..
T Consensus 40 ~I~~g~l~--pG~~L~e~~La~~lgVSRtpVR----EAL~~L~~ 77 (239)
T 2hs5_A 40 AIIDGTFR--PGARLSEPDICAALDVSRNTVR----EAFQILIE 77 (239)
T ss_dssp HHHHTSSC--TTCEECHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred HHHcCCCC--CcCEeCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 35544332 3456899999999999999999 88888865
No 297
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=57.84 E-value=7.6 Score=32.24 Aligned_cols=32 Identities=13% Similarity=0.267 Sum_probs=27.5
Q ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhH
Q 007404 557 EDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 592 (605)
Q Consensus 557 ~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 592 (605)
+.|+|++-.|||+.+||.+.-|. +++++|++.
T Consensus 30 eaG~PlkageIae~~GvdKKeVd----Kaik~LKkE 61 (80)
T 2lnb_A 30 EAGSPVKLAQLVKECQAPKRELN----QVLYRMKKE 61 (80)
T ss_dssp HHTSCEEHHHHHHHHTSCHHHHH----HHHHHHHHT
T ss_pred HcCCCCCHHHHHHHHCCCHHHHH----HHHHHHHHc
Confidence 45689999999999999988888 788888864
No 298
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=57.76 E-value=8.5 Score=30.48 Aligned_cols=22 Identities=14% Similarity=0.341 Sum_probs=20.8
Q ss_pred CHHHHHHHHCCCHHHHHHHHHH
Q 007404 563 TLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 563 Tl~EIAe~LGISrerVRqie~R 584 (605)
|..++|+.+|||+.+|+++++.
T Consensus 13 sq~~lA~~lgvs~~~is~~e~g 34 (79)
T 3bd1_A 13 SVSALAASLGVRQSAISNWRAR 34 (79)
T ss_dssp SHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHC
Confidence 8999999999999999999975
No 299
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=57.72 E-value=13 Score=32.10 Aligned_cols=23 Identities=17% Similarity=0.421 Sum_probs=21.7
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 007404 562 KTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRqie~R 584 (605)
+|.+++|+.+|||+.+|.++++.
T Consensus 26 lsq~~lA~~~gis~~~is~~E~g 48 (126)
T 3ivp_A 26 LTREQVGAMIEIDPRYLTNIENK 48 (126)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHS
T ss_pred CCHHHHHHHhCcCHHHHHHHHCC
Confidence 99999999999999999999874
No 300
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.54 E-value=19 Score=28.96 Aligned_cols=53 Identities=11% Similarity=0.245 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHh
Q 007404 542 LNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKR 594 (605)
Q Consensus 542 L~~rER~VL~LRyGl~dg-~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~ 594 (605)
+++.+..+|...|..+.. ......+||..+|++...|..+...-..|.|+...
T Consensus 14 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (80)
T 2dmq_A 14 FKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLL 67 (80)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHH
Confidence 566777778777765421 11346789999999999999999999988888654
No 301
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=57.52 E-value=37 Score=26.75 Aligned_cols=55 Identities=9% Similarity=0.110 Sum_probs=41.8
Q ss_pred cCCHHHHHHHHHHHh---cCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHhh
Q 007404 541 TLNPRERQVVRWRFG---LEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRT 595 (605)
Q Consensus 541 ~L~~rER~VL~LRyG---l~dg-~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~ 595 (605)
.+++.+..+|.-.|. .+.. ....-.+||..+|+|...|.........|.|+....
T Consensus 7 ~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 7 NFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred cCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 467888889988883 2211 113467899999999999999999999999876543
No 302
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=57.03 E-value=17 Score=32.14 Aligned_cols=43 Identities=21% Similarity=0.088 Sum_probs=29.0
Q ss_pred cCCHHHHHHHHHHHh--cCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 007404 541 TLNPRERQVVRWRFG--LEDGRMKTLQEIGELMGVSRERIRQIES 583 (605)
Q Consensus 541 ~L~~rER~VL~LRyG--l~dg~~~Tl~EIAe~LGISrerVRqie~ 583 (605)
.|++.|-.|+..-+. ..+....|..+||+.+|+|..+|.+++.
T Consensus 29 gLt~~e~~vll~L~~~~~~~~~~ps~~~LA~~l~~s~~~V~~~l~ 73 (128)
T 2vn2_A 29 GLGEGELVLLLHMQSFFEEGVLFPTPAELAERMTVSAAECMEMVR 73 (128)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCSSCCHHHHHHTSSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 466666665544332 2222337999999999999999994443
No 303
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.91 E-value=21 Score=28.02 Aligned_cols=51 Identities=8% Similarity=0.081 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhH
Q 007404 542 LNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 592 (605)
Q Consensus 542 L~~rER~VL~LRyGl~dg-~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 592 (605)
+++.+..+|...|..+.. ......+||..+|++...|......-..|.|+.
T Consensus 14 ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~ 65 (70)
T 2dmu_A 14 FTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRS 65 (70)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehcccccccccccc
Confidence 566777788777765422 113467899999999999999999888888764
No 304
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=56.71 E-value=36 Score=26.59 Aligned_cols=53 Identities=13% Similarity=0.112 Sum_probs=41.6
Q ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHH
Q 007404 541 TLNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 593 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg-~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l 593 (605)
.+++.+..+|...|..+.. ......+||..+|+|...|......-..|.|+..
T Consensus 8 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 61 (68)
T 1ahd_P 8 TYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEN 61 (68)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhc
Confidence 3677788888888876532 2246789999999999999999988888887754
No 305
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=56.71 E-value=8.1 Score=37.42 Aligned_cols=47 Identities=19% Similarity=0.250 Sum_probs=31.8
Q ss_pred cCCHHHHHHHHHHHhcC-CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 541 TLNPRERQVVRWRFGLE-DGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~-dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
.|++.+..+|..-|.+. +|...+..+||+.||+++.+|.+ ++++|.+
T Consensus 3 ~lt~~~e~yL~~i~~l~~~~~~~~~~~la~~l~vs~~tvs~----~l~~Le~ 50 (226)
T 2qq9_A 3 DLVATTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQ----TVARMER 50 (226)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCCBHHHHHHHHTCCHHHHHH----HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcCCCccHHHHHHHHCCCHHHHHH----HHHHHHH
Confidence 46667777776666542 22223559999999999999994 5555543
No 306
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=56.64 E-value=10 Score=37.08 Aligned_cols=41 Identities=20% Similarity=0.251 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 547 RQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 547 R~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
|-+-.|.+....+.++|+.|||+.+|+++.+|.. -++.|.+
T Consensus 7 r~l~iL~~l~~~~~~~s~~ela~~~gl~~stv~r----~l~~L~~ 47 (241)
T 2xrn_A 7 RAASIMRALGSHPHGLSLAAIAQLVGLPRSTVQR----IINALEE 47 (241)
T ss_dssp HHHHHHHHHHTCTTCEEHHHHHHHTTSCHHHHHH----HHHHHHT
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 3333333433344569999999999999999994 4455543
No 307
>1gxq_A PHOB, phosphate regulon transcriptional regulatory protein; transcriptional activator, helix-winged-helix, sensory transduction; 2.0A {Escherichia coli} SCOP: a.4.6.1 PDB: 1gxp_A 1qqi_A 2z33_A 3t72_A
Probab=56.23 E-value=19 Score=30.38 Aligned_cols=50 Identities=10% Similarity=0.134 Sum_probs=39.8
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHh
Q 007404 541 TLNPRERQVVRWRFGLEDGRMKTLQEIGELM-----GVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~L-----GISrerVRqie~RALkKLR~ 591 (605)
.|+++|..+|.+-. ...|+..|.++|.+.+ ..+..+|++.+.+-.+||..
T Consensus 31 ~Lt~~E~~lL~~L~-~~~g~vvsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~~ 85 (106)
T 1gxq_A 31 EMGPTEFKLLHFFM-THPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEP 85 (106)
T ss_dssp CCCHHHHHHHHHHH-HSCSSEECHHHHHHHHTCSSSCCCTHHHHHHHHHHHHHHGG
T ss_pred EcCHHHHHHHHHHH-HCCCeeEcHHHHHHHHcCCCCCCCcccHHHHHHHHHHHhcc
Confidence 48999999998754 4567889999999998 46788888877777777754
No 308
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=55.89 E-value=9.7 Score=32.42 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=21.5
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 007404 562 KTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRqie~R 584 (605)
+|..++|+.+|||+.+|+++++.
T Consensus 42 lsq~~lA~~~gis~~~is~~E~g 64 (117)
T 3f52_A 42 VTLRELAEASRVSPGYLSELERG 64 (117)
T ss_dssp CCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHCC
Confidence 89999999999999999999864
No 309
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=55.51 E-value=29 Score=28.00 Aligned_cols=55 Identities=9% Similarity=0.127 Sum_probs=41.4
Q ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHhh
Q 007404 541 TLNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRT 595 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg-~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~ 595 (605)
.+++.+..+|...|..+.. ......+||..+|++...|+.+...-..|.|+....
T Consensus 13 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 68 (80)
T 2cue_A 13 SFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKL 68 (80)
T ss_dssp CSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhh
Confidence 3677788888888865422 113467899999999999999998888888876543
No 310
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=55.36 E-value=11 Score=36.90 Aligned_cols=26 Identities=15% Similarity=0.098 Sum_probs=21.5
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHH
Q 007404 558 DGRMKTLQEIGELMGVSRERIRQIES 583 (605)
Q Consensus 558 dg~~~Tl~EIAe~LGISrerVRqie~ 583 (605)
.+.++|+.|||+.+|+++.+|..++.
T Consensus 20 ~~~~~~~~ela~~~gl~~stv~r~l~ 45 (249)
T 1mkm_A 20 NPGDVSVSEIAEKFNMSVSNAYKYMV 45 (249)
T ss_dssp CSSCBCHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 34469999999999999999995443
No 311
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=55.33 E-value=60 Score=27.61 Aligned_cols=35 Identities=11% Similarity=-0.031 Sum_probs=26.8
Q ss_pred HHHHHHHHHcCCCCCHHHHHHhcCCCHHHHHHHHh
Q 007404 456 EARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLL 490 (605)
Q Consensus 456 ka~~~L~~elgr~PT~eEIAe~lgis~e~V~~~l~ 490 (605)
++..-+........+.++||+.+|++...+....+
T Consensus 11 ~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk 45 (120)
T 3mkl_A 11 RVCTVINNNIAHEWTLARIASELLMSPSLLKKKLR 45 (120)
T ss_dssp HHHHHHHTSTTSCCCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 33444445556678999999999999999988765
No 312
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=55.29 E-value=12 Score=31.27 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=20.4
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 007404 562 KTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRqie~R 584 (605)
+|..++|+.+|||+.+|+++++.
T Consensus 32 ltq~~lA~~~gis~~~is~~e~g 54 (104)
T 3cec_A 32 INTANFAEILGVSNQTIQEVING 54 (104)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 89999999999999999988864
No 313
>1opc_A OMPR, OMPRC; transcription regulation, response regulator, winged helix, osmoregulation; 1.95A {Escherichia coli} SCOP: a.4.6.1 PDB: 1odd_A 2jpb_A
Probab=55.05 E-value=11 Score=31.96 Aligned_cols=49 Identities=14% Similarity=0.036 Sum_probs=39.1
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHH
Q 007404 541 TLNPRERQVVRWRFGLEDGRMKTLQEIGELM-----GVSRERIRQIESSAFRKLK 590 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~L-----GISrerVRqie~RALkKLR 590 (605)
.|+++|..+|.+-. ...|...|.++|.+.+ ..+..+|++.+.+-.+||.
T Consensus 31 ~Lt~~E~~lL~~L~-~~~g~~vsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~ 84 (110)
T 1opc_A 31 PLTSGEFAVLKALV-SHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVE 84 (110)
T ss_dssp CCCHHHHHHHHHHH-HSTTCCEEHHHHHHHHCCSSSCTTSSCHHHHHHHHHHHHC
T ss_pred EcCHHHHHHHHHHH-HcCCceEcHHHHHHHHcCCCCCCCcchHHHHHHHHHHHhh
Confidence 58999999988754 4567889999999999 5677888877777666664
No 314
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=55.03 E-value=23 Score=27.47 Aligned_cols=53 Identities=15% Similarity=0.221 Sum_probs=40.6
Q ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHH
Q 007404 541 TLNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 593 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg-~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l 593 (605)
.+++.+..+|...|..+.. ......+||..+|+|...|......-..|.|+..
T Consensus 7 ~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~ 60 (67)
T 2k40_A 7 AFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSH 60 (67)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSC
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhc
Confidence 3677888889888865422 1134678999999999999999998888887643
No 315
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=54.98 E-value=10 Score=37.10 Aligned_cols=29 Identities=31% Similarity=0.399 Sum_probs=24.9
Q ss_pred CCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 559 GRMK-TLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 559 g~~~-Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
|..+ |..|+|+.||||+.||| +|++.|..
T Consensus 31 g~~lPse~~La~~~~vSr~tvr----~Al~~L~~ 60 (243)
T 2wv0_A 31 DMPLPSEREYAEQFGISRMTVR----QALSNLVN 60 (243)
T ss_dssp TCBCCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred cCCCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 3446 89999999999999999 78888876
No 316
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=54.93 E-value=10 Score=39.37 Aligned_cols=46 Identities=30% Similarity=0.377 Sum_probs=34.5
Q ss_pred CCHHHHHHHHH--HHhcCCCCCCCHHHHHHHH--CCCHHHHHHHHHHHHHHHHh
Q 007404 542 LNPRERQVVRW--RFGLEDGRMKTLQEIGELM--GVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 542 L~~rER~VL~L--RyGl~dg~~~Tl~EIAe~L--GISrerVRqie~RALkKLR~ 591 (605)
|++|++.||.. ...+..+.|.+.+++++.+ |+|..||| |-|..|-+
T Consensus 15 l~eR~~~IL~~i~~~yl~~~~pV~s~~La~~~~l~VS~aTIR----rDL~~LE~ 64 (338)
T 1stz_A 15 LNDRQRKVLYCIVREYIENKKPVSSQRVLEVSNIEFSSATIR----NDMKKLEY 64 (338)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSCBCHHHHHHHSCCCSCHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCccHHHHHHHhCCCCCHHHHH----HHHHHHHH
Confidence 88999999873 1112345689999999999 99999999 44454443
No 317
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=54.90 E-value=14 Score=33.07 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q 007404 544 PRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRK 588 (605)
Q Consensus 544 ~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkK 588 (605)
.|.++|... |. | .+..|+|..+|+|..+|++|+.+..+.
T Consensus 81 ~Rn~~I~~~-f~-G----~n~~eLArkYgLSer~I~~Ii~~~r~~ 119 (129)
T 1rr7_A 81 IRDLRIWND-FN-G----RNVSELTTRYGVTFNTVYKAIRRMRRL 119 (129)
T ss_dssp HHHHHHHHH-CC-S----SCHHHHHHHHTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH-hC-C----CCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 466667765 32 3 899999999999999999888766553
No 318
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=54.90 E-value=1e+02 Score=33.05 Aligned_cols=34 Identities=26% Similarity=0.452 Sum_probs=25.5
Q ss_pred HHHhHHHHHHhhcCCCCchHHHHHhhc--CCHHHHH
Q 007404 324 KLEGLREVLSERCGGSPTFAQWAAAAG--VDQRELR 357 (605)
Q Consensus 324 ~le~~~~~L~~~~G~~pt~~ewA~a~g--~d~~~L~ 357 (605)
++.+.+..+...+|+.|+..+.|...| ++.+.+.
T Consensus 285 ~lrr~~r~l~~~lgr~pt~eeiA~~l~~~v~~e~V~ 320 (438)
T 1l9z_H 285 KLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVE 320 (438)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCHHHHH
Confidence 344555667777899999999999888 8765544
No 319
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=54.90 E-value=14 Score=28.43 Aligned_cols=18 Identities=22% Similarity=0.458 Sum_probs=16.0
Q ss_pred CHHHHHHHHCCCHHHHHH
Q 007404 563 TLQEIGELMGVSRERIRQ 580 (605)
Q Consensus 563 Tl~EIAe~LGISrerVRq 580 (605)
+..+.|+.||||+.++..
T Consensus 35 n~~~aA~~LGIsr~tL~r 52 (61)
T 1g2h_A 35 STRKLAQRLGVSHTAIAN 52 (61)
T ss_dssp SHHHHHHHTTSCTHHHHH
T ss_pred CHHHHHHHhCCCHHHHHH
Confidence 677999999999999983
No 320
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=54.89 E-value=12 Score=31.64 Aligned_cols=49 Identities=16% Similarity=0.335 Sum_probs=32.8
Q ss_pred HHHHHhcCCHHHHH-HHHHHHhcCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHh
Q 007404 535 LEKVLDTLNPRERQ-VVRWRFGLEDGRMKTLQEIGELM-GVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 535 L~~aL~~L~~rER~-VL~LRyGl~dg~~~Tl~EIAe~L-GISrerVRqie~RALkKLR~ 591 (605)
+..+++.|+.+-+. ||..-+ + .+.++.||++.+ |+|+.+|. +.+++|.+
T Consensus 4 ~~~~l~~l~~~~~~~IL~~L~--~--~~~~~~eLa~~l~~is~~tls----~~L~~Le~ 54 (107)
T 2hzt_A 4 VEATLEVIGGKWKXVILXHLT--H--GKKRTSELKRLMPNITQKMLT----QQLRELEA 54 (107)
T ss_dssp HHHHHHHHCSTTHHHHHHHHT--T--CCBCHHHHHHHCTTSCHHHHH----HHHHHHHH
T ss_pred HHHHHHHHcCccHHHHHHHHH--h--CCCCHHHHHHHhcCCCHHHHH----HHHHHHHH
Confidence 34556667766553 443322 2 249999999999 99999999 44555544
No 321
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=54.83 E-value=26 Score=26.85 Aligned_cols=52 Identities=10% Similarity=0.056 Sum_probs=39.5
Q ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhH
Q 007404 541 TLNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 592 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg-~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 592 (605)
.+++.+..+|...|..+.. ......+||..+|+|...|......-..|.|+.
T Consensus 9 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 9 AYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 3577778888888866532 113567899999999999999998888887763
No 322
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=54.82 E-value=7.9 Score=35.19 Aligned_cols=39 Identities=5% Similarity=0.188 Sum_probs=26.9
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHH
Q 007404 541 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIE 582 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie 582 (605)
.+++.+++++.......+ .+..+||+.||+|+.+|++.+
T Consensus 139 ~~~~~~~~~~~~~~~~~~---~~~~~ia~~l~is~~tv~~~l 177 (184)
T 3rqi_A 139 SVDRLEWEHIQRVLAENN---NNISATARALNMHRRTLQRKL 177 (184)
T ss_dssp C---CHHHHHHHHHHHTT---SCHHHHHHHHTSCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcc---ccHHHHHHHcCCcHHHHHHHH
Confidence 355666677665554332 799999999999999998543
No 323
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=54.66 E-value=44 Score=31.04 Aligned_cols=44 Identities=16% Similarity=0.285 Sum_probs=30.3
Q ss_pred hcCCHHHHHHHHHH--Hhc---CCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 007404 540 DTLNPRERQVVRWR--FGL---EDGRMKTLQEIGELMGVSRERIRQIES 583 (605)
Q Consensus 540 ~~L~~rER~VL~LR--yGl---~dg~~~Tl~EIAe~LGISrerVRqie~ 583 (605)
..+++..+.-..++ -+. ++++.+|..|||+.||||+.|+.++..
T Consensus 22 r~yt~EfK~aAv~l~~~~~~~p~~~~~lTv~eIA~~LGIS~~TLyrW~k 70 (155)
T 2ao9_A 22 QKLTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRT 70 (155)
T ss_dssp TTSCHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred hhcCHHHHHHHHHHHHccccccccccCCCHHHHHHHhCCCHHHHHHHHH
Confidence 45777666654432 221 122248999999999999999999776
No 324
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=54.50 E-value=9.3 Score=37.32 Aligned_cols=29 Identities=28% Similarity=0.344 Sum_probs=24.1
Q ss_pred CCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 559 GRMK-TLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 559 g~~~-Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
|..+ |-.|+|+.||||+.||| +|+..|..
T Consensus 30 g~~lPse~~La~~~~vSr~tvr----~Al~~L~~ 59 (236)
T 3edp_A 30 GMLMPNETALQEIYSSSRTTIR----RAVDLLVE 59 (236)
T ss_dssp CC--CCHHHHHHHTTCCHHHHH----HHHHHHHH
T ss_pred cCCCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 3446 89999999999999999 88888876
No 325
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=54.47 E-value=48 Score=28.71 Aligned_cols=37 Identities=16% Similarity=0.138 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHhcCCCHHHHHHHHh
Q 007404 454 VKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLL 490 (605)
Q Consensus 454 i~ka~~~L~~elgr~PT~eEIAe~lgis~e~V~~~l~ 490 (605)
+.++..-+.+.....++.++||+.+|+|...+..+.+
T Consensus 13 i~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk 49 (129)
T 1bl0_A 13 IHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFK 49 (129)
T ss_dssp HHHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4445555556667779999999999999999988765
No 326
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=54.46 E-value=45 Score=26.86 Aligned_cols=57 Identities=14% Similarity=0.210 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhc-C--CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 528 KKFMKEDLEKVLDTLNPRERQVVRWRFGL-E--DGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 528 ~~el~~~L~~aL~~L~~rER~VL~LRyGl-~--dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
.+.+..+|. ..++++++.|...--+. + |.=..++.+|++.+|++.+.|. ++|++|+.
T Consensus 15 ~ehL~~Ql~---~~~~~~~~~Ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~eve----~vL~~lQ~ 74 (76)
T 2k9l_A 15 LEELQQNIK---LELEGKEQELALELLNYLNEKGFLSKSVEEISDVLRCSVEELE----KVRQKVLR 74 (76)
T ss_dssp HHHHHHHHH---HHCCTTSHHHHHHHHHHCTTSSTTCCCHHHHHHHHTSCHHHHH----HHHHHHHT
T ss_pred HHHHHHHHc---ccCCHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHHHHH----HHHHHHhc
Confidence 444555555 36899998877654332 2 2235799999999999999887 56666653
No 327
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=54.44 E-value=33 Score=26.78 Aligned_cols=54 Identities=9% Similarity=0.087 Sum_probs=41.1
Q ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHh
Q 007404 541 TLNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKR 594 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg-~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~ 594 (605)
.+++.+..+|...|..+.. ......+||..+|++...|......-..|.|+...
T Consensus 8 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~ 62 (68)
T 1zq3_P 8 TFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 62 (68)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhc
Confidence 3677788888888866532 11346789999999999999999888888877543
No 328
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=54.35 E-value=23 Score=27.82 Aligned_cols=53 Identities=6% Similarity=0.108 Sum_probs=39.9
Q ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHH
Q 007404 541 TLNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 593 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg-~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l 593 (605)
.+++.+..+|...|..+.. ......+||..+|++...|.....+-..|.|...
T Consensus 13 ~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 13 RFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 3567777788877765422 1135678999999999999999998888887643
No 329
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=54.28 E-value=8.2 Score=34.70 Aligned_cols=38 Identities=16% Similarity=0.106 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHC-----CCHHHHHHHHH
Q 007404 545 RERQVVRWRFGLEDGRMKTLQEIGELMG-----VSRERIRQIES 583 (605)
Q Consensus 545 rER~VL~LRyGl~dg~~~Tl~EIAe~LG-----ISrerVRqie~ 583 (605)
|=+.++...+.. ++.++|++|+|+.+| ||+..|.++++
T Consensus 11 RL~~L~~~~~~~-~~~~~T~~elA~~~~~~G~~is~s~is~~E~ 53 (135)
T 3r1f_A 11 RLNRLFDTVYPP-GRGPHTSAEVIAALKAEGITMSAPYLSQLRS 53 (135)
T ss_dssp HHHHHHHHCCCT-TSCCCCHHHHHHHHHTTTCCCCHHHHHHHHH
T ss_pred HHHHHHHhhccc-CCCCCCHHHHHHHHcccCCCcCHHHHHHHHC
Confidence 333344433322 346799999999999 99999999996
No 330
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.15 E-value=16 Score=29.51 Aligned_cols=51 Identities=14% Similarity=0.169 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHHhcCC---C--CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhH
Q 007404 542 LNPRERQVVRWRFGLED---G--RMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 592 (605)
Q Consensus 542 L~~rER~VL~LRyGl~d---g--~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 592 (605)
+++.+..+|...|-.+. . ......+||..+|++...|+........|.|+.
T Consensus 15 ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~ 70 (80)
T 2da4_A 15 FSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLM 70 (80)
T ss_dssp CCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhc
Confidence 67778888887775430 1 012457899999999999999999988888873
No 331
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=54.00 E-value=29 Score=27.40 Aligned_cols=54 Identities=11% Similarity=0.031 Sum_probs=40.6
Q ss_pred cCCHHHHHHHHHHHhc---CCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHh
Q 007404 541 TLNPRERQVVRWRFGL---EDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKR 594 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl---~dg-~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~ 594 (605)
.+++.+..+|.-.|.. +-. ....-.+||..+|+|...|.........|.++.+.
T Consensus 13 ~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 13 VLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp CCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred cCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccc
Confidence 4677788888877754 211 11345789999999999999999999999887543
No 332
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=53.96 E-value=18 Score=27.45 Aligned_cols=52 Identities=15% Similarity=0.151 Sum_probs=38.6
Q ss_pred cCCHHHHHHHHHHHhcCCCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhH
Q 007404 541 TLNPRERQVVRWRFGLEDGR-MKTLQEIGELMGVSRERIRQIESSAFRKLKNK 592 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~-~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 592 (605)
.+++.+..+|...|..+... .....+||..+|+|...|......-..|.|+.
T Consensus 5 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~ 57 (60)
T 3a02_A 5 TFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQ 57 (60)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC--
T ss_pred ccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhh
Confidence 46777888888888665321 12467899999999999999998888777653
No 333
>2pmu_A Response regulator PHOP; winged helix-TUN-HELX, transcription regulation; 1.78A {Mycobacterium tuberculosis}
Probab=53.87 E-value=19 Score=30.61 Aligned_cols=50 Identities=20% Similarity=0.299 Sum_probs=39.7
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHh
Q 007404 541 TLNPRERQVVRWRFGLEDGRMKTLQEIGELM-----GVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~L-----GISrerVRqie~RALkKLR~ 591 (605)
.|+++|..+|.+-. ...|...|.++|.+.+ ..+..+|+..+.+-.+||..
T Consensus 34 ~Lt~~E~~lL~~L~-~~~g~~vsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~~ 88 (110)
T 2pmu_A 34 SLSPTEFTLLRYFV-INAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDT 88 (110)
T ss_dssp CCCHHHHHHHHHHH-HTTTSCBCHHHHHHHHSCTTCCSSSCHHHHHHHHHHHHHCC
T ss_pred ecCHHHHHHHHHHH-HCCCEEEcHHHHHHHHcCCCCCCccchHHHHHHHHHHHhcc
Confidence 58999999987754 4567889999999998 56778898877777777753
No 334
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=53.85 E-value=27 Score=27.97 Aligned_cols=54 Identities=9% Similarity=0.111 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHhh
Q 007404 542 LNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRT 595 (605)
Q Consensus 542 L~~rER~VL~LRyGl~dg-~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~ 595 (605)
+++.+..+|...|..+.. ......+||..+|++...|..+..+-..|.|+....
T Consensus 16 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~ 70 (77)
T 1nk2_P 16 FTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNE 70 (77)
T ss_dssp CCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhcc
Confidence 566777777777765422 113467899999999999999999988888876543
No 335
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=53.50 E-value=10 Score=36.99 Aligned_cols=29 Identities=21% Similarity=0.305 Sum_probs=25.1
Q ss_pred CCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 559 GRMK-TLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 559 g~~~-Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
|..+ |..|+|+.||||+.+|| +|++.|..
T Consensus 26 g~~lPse~~La~~~~vSr~tvr----~Al~~L~~ 55 (239)
T 3bwg_A 26 GDKLPVLETLMAQFEVSKSTIT----KSLELLEQ 55 (239)
T ss_dssp TCBCCCHHHHHHHTTCCHHHHH----HHHHHHHH
T ss_pred CCCCcCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 3446 89999999999999999 78888876
No 336
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=53.09 E-value=14 Score=32.63 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=22.5
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHH
Q 007404 562 KTLQEIGELMGVSRERIRQIESSA 585 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRqie~RA 585 (605)
+|++|+|+.+|||+.+|.++++--
T Consensus 17 ltq~elA~~~gis~~~is~iE~g~ 40 (130)
T 3fym_A 17 MTLTELEQRTGIKREMLVHIENNE 40 (130)
T ss_dssp CCHHHHHHHHCCCHHHHHHHHTTC
T ss_pred CCHHHHHHHHCcCHHHHHHHHCCC
Confidence 999999999999999999999754
No 337
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=53.01 E-value=24 Score=28.25 Aligned_cols=52 Identities=12% Similarity=0.045 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHH
Q 007404 542 LNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 593 (605)
Q Consensus 542 L~~rER~VL~LRyGl~dg-~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l 593 (605)
-+..+..+|.-.|...-. .+....+||..+|+|+..|+.....-..|+|+..
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 355677778777766522 1246789999999999999999999999988743
No 338
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=53.01 E-value=19 Score=35.41 Aligned_cols=31 Identities=26% Similarity=0.175 Sum_probs=23.4
Q ss_pred HHHhcCCCCCCCHHHHHHHHCCCHHHHHHHH
Q 007404 552 WRFGLEDGRMKTLQEIGELMGVSRERIRQIE 582 (605)
Q Consensus 552 LRyGl~dg~~~Tl~EIAe~LGISrerVRqie 582 (605)
|.+....+.++|+.|||+.+|+++.+|..++
T Consensus 20 L~~l~~~~~~~~~~eia~~~gl~~stv~r~l 50 (257)
T 2g7u_A 20 LLAFDAQRPNPTLAELATEAGLSRPAVRRIL 50 (257)
T ss_dssp HHTCSSSCSSCBHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHCcCHHHHHHHH
Confidence 3333333456999999999999999999443
No 339
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=52.90 E-value=17 Score=30.96 Aligned_cols=49 Identities=16% Similarity=0.342 Sum_probs=33.0
Q ss_pred HHHHHhcCCHHHH-HHHHHHHhcCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHh
Q 007404 535 LEKVLDTLNPRER-QVVRWRFGLEDGRMKTLQEIGELM-GVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 535 L~~aL~~L~~rER-~VL~LRyGl~dg~~~Tl~EIAe~L-GISrerVRqie~RALkKLR~ 591 (605)
+...+..++.+-+ .||..-+ ++ +.+..||++.+ |+|+.+|. +.+++|.+
T Consensus 12 ~~~~l~~l~~~~~~~IL~~L~--~~--~~~~~eLa~~l~~is~~tvs----~~L~~Le~ 62 (112)
T 1z7u_A 12 INLALSTINGKWKLSLMDELF--QG--TKRNGELMRALDGITQRVLT----DRLREMEK 62 (112)
T ss_dssp HHHHHHTTCSTTHHHHHHHHH--HS--CBCHHHHHHHSTTCCHHHHH----HHHHHHHH
T ss_pred HHHHHHHHcCccHHHHHHHHH--hC--CCCHHHHHHHhccCCHHHHH----HHHHHHHH
Confidence 4556677765544 3444333 22 48999999999 99999999 44555544
No 340
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=52.86 E-value=11 Score=37.20 Aligned_cols=30 Identities=37% Similarity=0.412 Sum_probs=25.5
Q ss_pred CCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 558 DGRMK-TLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 558 dg~~~-Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
.|..+ |-.|+|+.||||+.||| +|+..|..
T Consensus 32 ~g~~lPse~~La~~~~vSr~tvr----~Al~~L~~ 62 (248)
T 3f8m_A 32 IGDPFPAEREIAEQFEVARETVR----QALRELLI 62 (248)
T ss_dssp TTCBCCCHHHHHHHTTCCHHHHH----HHHHHHHH
T ss_pred CCCcCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 34446 99999999999999999 88888865
No 341
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=52.71 E-value=15 Score=30.25 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=21.2
Q ss_pred CCHHHHHHHHCCCHHH----HHHHHHH
Q 007404 562 KTLQEIGELMGVSRER----IRQIESS 584 (605)
Q Consensus 562 ~Tl~EIAe~LGISrer----VRqie~R 584 (605)
+|.+|+|+.+|||+.+ |.++++.
T Consensus 15 lsq~~lA~~~gis~~~~~~~is~~E~g 41 (98)
T 3lfp_A 15 ISQEKLGVLAGIDEASASARMNQYEKG 41 (98)
T ss_dssp CCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHhCCCcchhhhHHHHHHCC
Confidence 8999999999999999 8888765
No 342
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=52.56 E-value=31 Score=27.85 Aligned_cols=53 Identities=13% Similarity=0.179 Sum_probs=40.3
Q ss_pred cCCHHHHHHHHHHHhcCCCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHH
Q 007404 541 TLNPRERQVVRWRFGLEDGR-MKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 593 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~-~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l 593 (605)
.+++.+..+|.-.|..+... .....+||..+|++...|..+...-..|.|+..
T Consensus 24 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~ 77 (81)
T 1fjl_A 24 TFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQH 77 (81)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhc
Confidence 36777778888777654221 124678999999999999999999888888754
No 343
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=52.56 E-value=6.9 Score=30.63 Aligned_cols=24 Identities=13% Similarity=0.335 Sum_probs=21.1
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHH
Q 007404 562 KTLQEIGELMGVSRERIRQIESSA 585 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRqie~RA 585 (605)
+|.+|+|+.||||+.||++.....
T Consensus 3 lt~~e~a~~LgvS~~Tl~rw~~~G 26 (68)
T 1j9i_A 3 VNKKQLADIFGASIRTIQNWQEQG 26 (68)
T ss_dssp EEHHHHHHHTTCCHHHHHHHTTTT
T ss_pred cCHHHHHHHHCcCHHHHHHHHHCC
Confidence 689999999999999999877653
No 344
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=52.56 E-value=12 Score=37.47 Aligned_cols=29 Identities=24% Similarity=0.092 Sum_probs=25.1
Q ss_pred CCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 559 GRMK-TLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 559 g~~~-Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
|..+ |-.|+|+.||||+.||| +|+..|..
T Consensus 50 g~~lPse~~La~~~~vSr~tvr----~Al~~L~~ 79 (272)
T 3eet_A 50 HTRLPSQARIREEYGVSDTVAL----EARKVLMA 79 (272)
T ss_dssp TSBCCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred cCCCcCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 3446 89999999999999999 88888875
No 345
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=52.55 E-value=9.8 Score=31.68 Aligned_cols=35 Identities=17% Similarity=0.177 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHH
Q 007404 544 PRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQI 581 (605)
Q Consensus 544 ~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqi 581 (605)
.-|+.+|..-+-..+ .+..+.|+.||||+.++...
T Consensus 50 ~~E~~~i~~aL~~~~---gn~~~aA~~LGIsr~tL~rk 84 (91)
T 1ntc_A 50 ELERTLLTTALRHTQ---GHKQEAARLLGWGAATLTAK 84 (91)
T ss_dssp HHHHHHHHHHHHHTT---TCTTHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC---CCHHHHHHHHCcCHHHHHHH
Confidence 446666665554443 36679999999999999743
No 346
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=52.31 E-value=29 Score=29.15 Aligned_cols=54 Identities=13% Similarity=0.154 Sum_probs=42.1
Q ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHh
Q 007404 541 TLNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKR 594 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg-~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~ 594 (605)
.+++.+..+|...|..+.. ......+||..+|++...|+....+-..|.|+...
T Consensus 40 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 40 NFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 4788888899888865522 11346789999999999999999888888887543
No 347
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=52.17 E-value=19 Score=27.38 Aligned_cols=48 Identities=15% Similarity=0.239 Sum_probs=36.2
Q ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q 007404 541 TLNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRK 588 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg-~~~Tl~EIAe~LGISrerVRqie~RALkK 588 (605)
.+++.+..+|...|..+.. ......+||..+|+|...|.........+
T Consensus 11 ~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k 59 (61)
T 1akh_A 11 SISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMR 59 (61)
T ss_dssp -CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhc
Confidence 4788888899888876532 11356789999999999999988776554
No 348
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=52.12 E-value=8 Score=33.04 Aligned_cols=37 Identities=16% Similarity=-0.028 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 007404 546 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSA 585 (605)
Q Consensus 546 ER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RA 585 (605)
++.-|.+.+..++ .|+.|+|..+|||.+.|.++...-
T Consensus 37 ~Kl~VV~~~~~g~---~s~~e~arry~Is~s~i~~W~r~~ 73 (95)
T 2jrt_A 37 RKAAVVKAVIHGL---ITEREALDRYSLSEEEFALWRSAV 73 (95)
T ss_dssp HHHHHHHHHHTTS---SCHHHHHHHTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCC---CCHHHHHHHhCCCHHHHHHHHHHH
Confidence 5554444444432 899999999999999999888664
No 349
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=52.04 E-value=14 Score=34.30 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=21.9
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 007404 562 KTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRqie~R 584 (605)
+|++|+|+.+|||+.+|.++++.
T Consensus 24 ~s~~~la~~~gis~~~ls~~e~g 46 (198)
T 2bnm_A 24 MDHAALASLLGETPETVAAWENG 46 (198)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 99999999999999999999874
No 350
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=51.85 E-value=11 Score=31.96 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=21.5
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 007404 562 KTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRqie~R 584 (605)
+|..++|+.+|||+.+|++++..
T Consensus 50 lsq~elA~~~gis~~~is~~E~G 72 (107)
T 2jvl_A 50 MTQAELGKEIGETAATVASYERG 72 (107)
T ss_dssp CCHHHHHHHHTCCHHHHHHHTTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 99999999999999999998863
No 351
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=51.70 E-value=22 Score=33.81 Aligned_cols=35 Identities=23% Similarity=0.150 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHH
Q 007404 544 PRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQI 581 (605)
Q Consensus 544 ~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqi 581 (605)
+|++.|+.+---. ...|.+|+|+.||+|..|||.=
T Consensus 12 eR~~~i~~~l~~~---~~~~~~~la~~~~vs~~TiRrD 46 (190)
T 4a0z_A 12 KRREAIRQQIDSN---PFITDHELSDLFQVSIQTIRLD 46 (190)
T ss_dssp HHHHHHHHHHHHC---TTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHC---CCEeHHHHHHHHCCCHHHHHHH
Confidence 3555566553322 2389999999999999999943
No 352
>3zq7_A KDP operon transcriptional regulatory protein KDP; response regulator; 2.52A {Escherichia coli}
Probab=51.68 E-value=26 Score=29.11 Aligned_cols=50 Identities=16% Similarity=0.159 Sum_probs=37.5
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHh
Q 007404 541 TLNPRERQVVRWRFGLEDGRMKTLQEIGELM-----GVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~L-----GISrerVRqie~RALkKLR~ 591 (605)
.|+++|..+|.+-. ...|+..|.++|.+.+ ..+..+|++.+.+-.+||..
T Consensus 28 ~Lt~~e~~lL~~L~-~~~g~~vsr~~L~~~vw~~~~~~~~~~l~~~I~rLRkkL~~ 82 (102)
T 3zq7_A 28 HLTPIEFRLLAVLL-NNAGKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQ 82 (102)
T ss_dssp CCCHHHHHHHHHHH-HTTTCEEEHHHHHHHHTSSSCSTTHHHHHHHHHHHHHHHCS
T ss_pred EcCHHHHHHHHHHH-HCCCeeECHHHHHHHhcCCCCCCccchHHHHHHHHHHHhhc
Confidence 58999999887654 5567889999999988 35667788766666666643
No 353
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=51.59 E-value=8.8 Score=30.92 Aligned_cols=24 Identities=13% Similarity=0.404 Sum_probs=21.3
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHH
Q 007404 561 MKTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 561 ~~Tl~EIAe~LGISrerVRqie~R 584 (605)
-+|++|+|+.|||++.+|+++...
T Consensus 16 ~LTi~EaAeylgIg~~~l~~L~~~ 39 (70)
T 1y6u_A 16 TLTIEEASKYFRIGENKLRRLAEE 39 (70)
T ss_dssp EEEHHHHHHHTCSCHHHHHHHHHH
T ss_pred eeCHHHHHHHHCcCHHHHHHHHHc
Confidence 389999999999999999987654
No 354
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=51.40 E-value=14 Score=34.37 Aligned_cols=22 Identities=14% Similarity=0.277 Sum_probs=20.0
Q ss_pred CCHHHHHHHHCCCHHHHHHHHH
Q 007404 562 KTLQEIGELMGVSRERIRQIES 583 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRqie~ 583 (605)
+|+.+||+.||+|+.||++++.
T Consensus 159 ~s~~~Ia~~l~is~~tv~r~l~ 180 (183)
T 1gdt_A 159 LGASHISKTMNIARSTVYKVIN 180 (183)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHh
Confidence 8999999999999999997654
No 355
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=50.98 E-value=1.7 Score=40.03 Aligned_cols=44 Identities=16% Similarity=0.284 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhH
Q 007404 542 LNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 592 (605)
Q Consensus 542 L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 592 (605)
+..-.+.|+. .+..+ ..+|..|||+.+|+|+.+|| +++++|...
T Consensus 11 ~d~l~~~Il~-~l~~~--~~ls~~eLa~~lgvSr~~vr----~al~~L~~~ 54 (163)
T 2gqq_A 11 LDRIDRNILN-ELQKD--GRISNVELSKRVGLSPTPCL----ERVRRLERQ 54 (163)
T ss_dssp CCSHHHHHHH-HHHHC--SSCCTTGGGTSSSCCTTTSS----STHHHHHHH
T ss_pred hhHHHHHHHH-HHHhC--CCCCHHHHHHHHCcCHHHHH----HHHHHHHHC
Confidence 5666677777 44433 34799999999999999999 677777653
No 356
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=50.81 E-value=1.5e+02 Score=27.27 Aligned_cols=34 Identities=29% Similarity=0.421 Sum_probs=26.3
Q ss_pred HHhHHHHHHhhcCCCCchHHHHHhhcCCHHHHHH
Q 007404 325 LEGLREVLSERCGGSPTFAQWAAAAGVDQRELRR 358 (605)
Q Consensus 325 le~~~~~L~~~~G~~pt~~ewA~a~g~d~~~L~~ 358 (605)
+.+....+....|+.|+..+.+...|++.+.+..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 134 (239)
T 1rp3_A 101 IKEVVEKLKEKLGREPTDEEVAKELGISTEELFK 134 (239)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHhCcCHHHHHH
Confidence 4455666777789999999999999998766544
No 357
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=50.77 E-value=12 Score=34.66 Aligned_cols=30 Identities=13% Similarity=0.190 Sum_probs=24.9
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 558 DGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 558 dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
.+.+.|.++||+.+|||+..|+ +.+.+|++
T Consensus 25 ~~~~~s~~~IA~~~~is~~~l~----kil~~L~~ 54 (162)
T 3k69_A 25 RDSKVASRELAQSLHLNPVMIR----NILSVLHK 54 (162)
T ss_dssp TTSCBCHHHHHHHHTSCGGGTH----HHHHHHHH
T ss_pred CCCCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 3567999999999999999999 55666665
No 358
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=50.71 E-value=13 Score=35.39 Aligned_cols=32 Identities=16% Similarity=0.330 Sum_probs=24.4
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 007404 547 RQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES 583 (605)
Q Consensus 547 R~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~ 583 (605)
+.|+.++ ..+ +|+.+||+.||+|+.+|..++.
T Consensus 166 ~~i~~~~-~~G----~s~~~Ia~~l~is~~tv~r~l~ 197 (209)
T 2r0q_C 166 HRVVEML-EEG----QAISKIAKEVNITRQTVYRIKH 197 (209)
T ss_dssp HHHHHHH-HTT----CCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHH-HcC----CCHHHHHHHHCcCHHHHHHHHh
Confidence 3466653 333 8999999999999999986543
No 359
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=50.53 E-value=21 Score=34.94 Aligned_cols=41 Identities=17% Similarity=0.141 Sum_probs=30.9
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 007404 540 DTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES 583 (605)
Q Consensus 540 ~~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~ 583 (605)
..|++-|+.....+....| +|.++||+.+|+|+.+|++++.
T Consensus 116 ~~L~~~E~a~~~~~l~~~g---~t~~~iA~~lG~s~~~V~~~l~ 156 (230)
T 1vz0_A 116 EDLSPVEEARGYQALLEMG---LTQEEVARRVGKARSTVANALR 156 (230)
T ss_dssp TTCCHHHHHHHHHHHHHTT---CCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcC---CCHHHHHHHHCcCHHHHHHHHH
Confidence 3688888765554443222 8999999999999999997664
No 360
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=50.43 E-value=16 Score=29.28 Aligned_cols=51 Identities=12% Similarity=0.272 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHHhcCCCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhH
Q 007404 542 LNPRERQVVRWRFGLEDGR-MKTLQEIGELMGVSRERIRQIESSAFRKLKNK 592 (605)
Q Consensus 542 L~~rER~VL~LRyGl~dg~-~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 592 (605)
+++.+..+|...|-.+... .....+||..+|++...|+.+...-..|.|+.
T Consensus 24 ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 75 (80)
T 2da3_A 24 ITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKS 75 (80)
T ss_dssp CCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSS
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhh
Confidence 4455556666666544211 12357899999999999999999988888763
No 361
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=50.27 E-value=15 Score=36.24 Aligned_cols=24 Identities=13% Similarity=0.217 Sum_probs=20.6
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHH
Q 007404 559 GRMKTLQEIGELMGVSRERIRQIE 582 (605)
Q Consensus 559 g~~~Tl~EIAe~LGISrerVRqie 582 (605)
+.++|+.|||+.+|+++.+|..++
T Consensus 36 ~~~~~~~eia~~~gl~kstv~r~l 59 (260)
T 2o0y_A 36 HPTRSLKELVEGTKLPKTTVVRLV 59 (260)
T ss_dssp BSSBCHHHHHHHHCCCHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHH
Confidence 356999999999999999999443
No 362
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=50.23 E-value=15 Score=34.00 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=21.8
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 007404 562 KTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRqie~R 584 (605)
+|++++|+.+|||+.+|+++++.
T Consensus 25 ltq~~lA~~~gis~~~is~~e~g 47 (192)
T 1y9q_A 25 LSLDATAQLTGVSKAMLGQIERG 47 (192)
T ss_dssp CCHHHHHHHHSSCHHHHHHHHTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 99999999999999999999864
No 363
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=50.12 E-value=20 Score=35.38 Aligned_cols=43 Identities=12% Similarity=0.178 Sum_probs=30.7
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 007404 541 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES 583 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~ 583 (605)
.|++.|+.+|..-.-..+|.+.+..++|+.||+|+.++.....
T Consensus 244 ~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~ 286 (324)
T 1hqc_A 244 GLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHE 286 (324)
T ss_dssp CCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTH
T ss_pred CCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHh
Confidence 4666777776643333344568899999999999999985443
No 364
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=49.89 E-value=12 Score=31.74 Aligned_cols=23 Identities=22% Similarity=0.444 Sum_probs=21.0
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 007404 562 KTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRqie~R 584 (605)
+|..++|+.+|||+.+|.++++.
T Consensus 25 lsq~~lA~~~gis~~~is~~e~g 47 (113)
T 2eby_A 25 LKINELAELLHVHRNSVSALINN 47 (113)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 89999999999999999998864
No 365
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=49.73 E-value=21 Score=26.98 Aligned_cols=20 Identities=25% Similarity=0.419 Sum_probs=19.2
Q ss_pred CHHHHHHHHCCCHHHHHHHH
Q 007404 563 TLQEIGELMGVSRERIRQIE 582 (605)
Q Consensus 563 Tl~EIAe~LGISrerVRqie 582 (605)
|+.++|+.+|||+.+|.+++
T Consensus 15 s~~~~A~~lgis~~~vs~~~ 34 (67)
T 2pij_A 15 TQSALAAALGVNQSAISQMV 34 (67)
T ss_dssp CHHHHHHHHTSCHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHH
Confidence 89999999999999999887
No 366
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=49.69 E-value=35 Score=27.80 Aligned_cols=57 Identities=16% Similarity=0.136 Sum_probs=43.3
Q ss_pred CCHHHHHHHHHHHhc---CCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHhhhhH
Q 007404 542 LNPRERQVVRWRFGL---EDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHL 598 (605)
Q Consensus 542 L~~rER~VL~LRyGl---~dg-~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~~~L 598 (605)
+++.+..+|.-.|.. +.. ......+||..+|++...|..+......|.|+......+
T Consensus 9 ft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~~~~~ 69 (83)
T 1le8_B 9 FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITIAPEL 69 (83)
T ss_dssp CCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCCCHHH
T ss_pred CCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccccCHHH
Confidence 788888999988876 321 112456899999999999999999999988875444333
No 367
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=49.68 E-value=32 Score=26.85 Aligned_cols=53 Identities=8% Similarity=0.105 Sum_probs=40.5
Q ss_pred cCCHHHHHHHHHHHhcCCCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHH
Q 007404 541 TLNPRERQVVRWRFGLEDGR-MKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 593 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~-~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l 593 (605)
.+++.+..+|...|..+... .....+||..+|+|...|......-..|.|+..
T Consensus 8 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~ 61 (68)
T 1ftt_A 8 LFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQA 61 (68)
T ss_dssp SCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhh
Confidence 35777788888888765321 134678999999999999999988888887643
No 368
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=49.33 E-value=9.6 Score=30.26 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=20.0
Q ss_pred CCHHHHHHHHCCCHHHHHHHHH
Q 007404 562 KTLQEIGELMGVSRERIRQIES 583 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRqie~ 583 (605)
.|+.++|+.||||+.+|++++.
T Consensus 14 ~sq~~~A~~Lgvsq~aVS~~~~ 35 (65)
T 2cw1_A 14 KNQEYAARALGLSQKLIEEVLK 35 (65)
T ss_dssp SCHHHHHHHSSSCHHHHHHHHH
T ss_pred cCHHHHHHHhCCCHHHHHHHHH
Confidence 5999999999999999998763
No 369
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=49.23 E-value=15 Score=30.39 Aligned_cols=19 Identities=11% Similarity=0.391 Sum_probs=16.5
Q ss_pred CCHHHHHHHHCCCHHHHHH
Q 007404 562 KTLQEIGELMGVSRERIRQ 580 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRq 580 (605)
-...+.|+.||||+.++..
T Consensus 55 GN~s~AA~~LGISR~TLyr 73 (81)
T 1umq_A 55 RNVSETARRLNMHRRTLQR 73 (81)
T ss_dssp SCHHHHHHHHTSCHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHH
Confidence 3678999999999999973
No 370
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=48.79 E-value=29 Score=25.79 Aligned_cols=49 Identities=6% Similarity=0.050 Sum_probs=35.9
Q ss_pred cCCHHHHHHHHHHHhcCCCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 007404 541 TLNPRERQVVRWRFGLEDGR-MKTLQEIGELMGVSRERIRQIESSAFRKL 589 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~-~~Tl~EIAe~LGISrerVRqie~RALkKL 589 (605)
.+++.+..+|...|-.+... .....+||..+|++...|+.....-..|.
T Consensus 8 ~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~ 57 (58)
T 3rkq_A 8 LFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKS 57 (58)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccC
Confidence 36777888888888654221 13467899999999999999887765553
No 371
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=48.48 E-value=51 Score=25.87 Aligned_cols=53 Identities=13% Similarity=0.244 Sum_probs=40.7
Q ss_pred cCCHHHHHHHHHHHhc-CCCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHH
Q 007404 541 TLNPRERQVVRWRFGL-EDGR-MKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 593 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl-~dg~-~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l 593 (605)
.+++.+..+|...|.. +... .....+||..+|++...|......-..|.|+..
T Consensus 7 ~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 7 TMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 3677888889888864 4211 124679999999999999999988888888754
No 372
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=48.33 E-value=38 Score=27.08 Aligned_cols=53 Identities=9% Similarity=0.104 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHh
Q 007404 542 LNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKR 594 (605)
Q Consensus 542 L~~rER~VL~LRyGl~dg-~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~ 594 (605)
+++.+..+|...|..+.. ......+||..+|++...|......-..|.|+...
T Consensus 20 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k 73 (77)
T 1puf_A 20 YTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 73 (77)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhh
Confidence 455566677766655421 11346789999999999999999888888887543
No 373
>1hkq_A REPA, replication protein; DNA binding protein, winged-helix, PPS10 plasmid, replication initiator dimer.; 2.75A {Pseudomonas syringae PV} SCOP: a.4.5.10
Probab=48.06 E-value=48 Score=29.35 Aligned_cols=57 Identities=25% Similarity=0.239 Sum_probs=45.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCC---------CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 535 LEKVLDTLNPRERQVVRWRFGLEDGR---------MKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 535 L~~aL~~L~~rER~VL~LRyGl~dg~---------~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
|-.+--.|+..|+.||.+....=+.. ..+..|+++.+|++..+..+.+..|.++|.+
T Consensus 12 Li~A~y~Ltl~E~rll~~~is~i~~~~~~~~~~~~~i~~~e~~~~~~~~~~~aY~~lk~a~~~L~~ 77 (132)
T 1hkq_A 12 LIESSHTLTLNEKRLVLCAASLIDSRKPLPKDGYLTIRADTFAEVFGIDVKHAYAALDDAATKLFN 77 (132)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHTCCTTSCCCGGGEEEEEHHHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred HhhccCCCCHHHHHHHHHHHHhCCcCCCCCCCCEEEEEHHHHHHHHCCCcchHHHHHHHHHHHHhh
Confidence 34556689999999988865543221 2678999999999999999999999999875
No 374
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=48.03 E-value=17 Score=35.99 Aligned_cols=31 Identities=16% Similarity=0.206 Sum_probs=23.5
Q ss_pred HHHhcCCCCCCCHHHHHHHHCCCHHHHHHHH
Q 007404 552 WRFGLEDGRMKTLQEIGELMGVSRERIRQIE 582 (605)
Q Consensus 552 LRyGl~dg~~~Tl~EIAe~LGISrerVRqie 582 (605)
|.+....+.++|+.|||+.+|+++.+|..++
T Consensus 27 L~~l~~~~~~~~~~eia~~~gl~~stv~r~l 57 (265)
T 2ia2_A 27 IRCFDHRNQRRTLSDVARATDLTRATARRFL 57 (265)
T ss_dssp HHTCCSSCSSEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHCcCHHHHHHHH
Confidence 3333333456999999999999999999544
No 375
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.01 E-value=23 Score=28.35 Aligned_cols=52 Identities=12% Similarity=0.125 Sum_probs=38.9
Q ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhH
Q 007404 541 TLNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 592 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg-~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 592 (605)
.+++.+..+|...|..+.. ......+||..+|++...|+.....-..|.|+.
T Consensus 14 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~ 66 (76)
T 2dn0_A 14 KKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNL 66 (76)
T ss_dssp CCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSC
T ss_pred cCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHh
Confidence 3566677777777765422 124577999999999999999998888777663
No 376
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=47.87 E-value=24 Score=28.41 Aligned_cols=52 Identities=10% Similarity=0.093 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHHhcCCCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHH
Q 007404 542 LNPRERQVVRWRFGLEDGR-MKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 593 (605)
Q Consensus 542 L~~rER~VL~LRyGl~dg~-~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l 593 (605)
+++.+..+|...|..+... .....+||..+|++...|..+...-..|.|+..
T Consensus 14 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~ 66 (80)
T 2dms_A 14 FTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQ 66 (80)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTT
T ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHH
Confidence 5677778888877665321 134678999999999999999998888887754
No 377
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.82 E-value=23 Score=28.62 Aligned_cols=51 Identities=14% Similarity=0.132 Sum_probs=36.9
Q ss_pred CCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhH
Q 007404 542 LNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 592 (605)
Q Consensus 542 L~~rER~VL~LRyGl~dg-~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 592 (605)
+++.+..+|...|..+.. ......+||..+|++...|+.+..+-..|.|+.
T Consensus 24 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~ 75 (80)
T 2dmt_A 24 FTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKS 75 (80)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCC
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcc
Confidence 556666677776665422 113467899999999999999998888777653
No 378
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=47.79 E-value=47 Score=31.88 Aligned_cols=22 Identities=14% Similarity=0.228 Sum_probs=21.0
Q ss_pred CCHHHHHHHHCCCHHHHHHHHH
Q 007404 562 KTLQEIGELMGVSRERIRQIES 583 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRqie~ 583 (605)
+|..++|+.+|||..+|.+++.
T Consensus 44 itQ~~lA~~~GiSqs~ISr~l~ 65 (194)
T 1ic8_A 44 IPQREVVDTTGLNQSHLSQHLN 65 (194)
T ss_dssp CCHHHHHHHHCCCHHHHHHHHH
T ss_pred CCHHHHHHHhCCChHHHHHHHh
Confidence 9999999999999999999975
No 379
>2jzy_A Transcriptional regulatory protein PCOR; two-component-system response regulator, effector domain, DNA-binding, phosphoprotein, plasmid; NMR {Klebsiella pneumoniae}
Probab=47.78 E-value=18 Score=31.05 Aligned_cols=49 Identities=14% Similarity=0.130 Sum_probs=38.3
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHH
Q 007404 541 TLNPRERQVVRWRFGLEDGRMKTLQEIGELM-----GVSRERIRQIESSAFRKLK 590 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~L-----GISrerVRqie~RALkKLR 590 (605)
.|+++|..+|.+-. ...|...|.++|.+.+ ..+..+|++.+.+-.+||.
T Consensus 28 ~Lt~~E~~lL~~L~-~~~g~vvsre~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~ 81 (112)
T 2jzy_A 28 HLTGKEYVLLELLL-QRTGEVLPRSLISSLVWNMNFDSDTNVIDVAVRRLRSKID 81 (112)
T ss_dssp CCCHHHHHHHHHHH-HTTTSCBCHHHHHHHHTCCCSSCSTTHHHHHHHHHHTTTT
T ss_pred ecCHHHHHHHHHHH-HCCCceEcHHHHHHHhcCCCCCCCcchHHHHHHHHHHHhc
Confidence 48999999987654 4567889999999998 4677888877766666663
No 380
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=47.76 E-value=11 Score=32.35 Aligned_cols=25 Identities=8% Similarity=0.315 Sum_probs=22.7
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHH
Q 007404 562 KTLQEIGELMGVSRERIRQIESSAF 586 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRqie~RAL 586 (605)
+|..|+|+.+|||..|+|.++...+
T Consensus 2 ~~i~e~A~~~gvs~~tLR~ye~~Gl 26 (108)
T 2vz4_A 2 YSVGQVAGFAGVTVRTLHHYDDIGL 26 (108)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHTS
T ss_pred CCHHHHHHHHCcCHHHHHHHHHCCC
Confidence 7999999999999999999987654
No 381
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=47.21 E-value=15 Score=33.53 Aligned_cols=47 Identities=23% Similarity=0.333 Sum_probs=30.9
Q ss_pred HHHhcCC-HHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 537 KVLDTLN-PRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 537 ~aL~~L~-~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
.++..|. +--..||.+-. + .++|..|||+.||+|+.+|+++ |++|++
T Consensus 50 ~~l~aL~~p~R~~IL~~L~--~--~~~t~~eLa~~lgls~stvs~h----L~~L~~ 97 (151)
T 3f6v_A 50 DQLEVAAEPTRRRLVQLLT--S--GEQTVNNLAAHFPASRSAISQH----LRVLTE 97 (151)
T ss_dssp CHHHHHTSHHHHHHHHHGG--G--CCEEHHHHHTTSSSCHHHHHHH----HHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHH--h--CCCCHHHHHHHHCcCHHHHHHH----HHHHHH
Confidence 3344444 44445555433 2 2499999999999999999944 455554
No 382
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=46.93 E-value=10 Score=34.26 Aligned_cols=43 Identities=26% Similarity=0.388 Sum_probs=33.6
Q ss_pred cCCHHHHHHHHHHH-hcCCCCCCCHHHHHH----HH--CCCHHHHHHHHHHH
Q 007404 541 TLNPRERQVVRWRF-GLEDGRMKTLQEIGE----LM--GVSRERIRQIESSA 585 (605)
Q Consensus 541 ~L~~rER~VL~LRy-Gl~dg~~~Tl~EIAe----~L--GISrerVRqie~RA 585 (605)
.|+-.|+.-|+.+| -.+++ +|..+||. .| ||++.+|+.++..-
T Consensus 11 ~lT~~qK~~i~~~~~~~~~~--~~q~~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 11 AITEHEKRALRHYFFQLQNR--SGQQDLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCCSHHHHHHHHHHHSSSSC--CCHHHHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 57777887777776 33322 89999999 99 99999999888663
No 383
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=46.49 E-value=1.3e+02 Score=28.95 Aligned_cols=31 Identities=13% Similarity=-0.024 Sum_probs=24.8
Q ss_pred HHHHHcCCCCCHHHHHHhcCCCHHHHHHHHh
Q 007404 460 QLYSENGRHPNNEEVAEATGLSMKRLHAVLL 490 (605)
Q Consensus 460 ~L~~elgr~PT~eEIAe~lgis~e~V~~~l~ 490 (605)
-+.+......+.+++|+.+|+|+..+..+.+
T Consensus 177 ~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk 207 (276)
T 3gbg_A 177 LVKSDITRNWRWADICGELRTNRMILKKELE 207 (276)
T ss_dssp HHHHTTTSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHhhcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3444455678999999999999999988865
No 384
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=46.21 E-value=41 Score=28.45 Aligned_cols=54 Identities=13% Similarity=-0.019 Sum_probs=41.9
Q ss_pred cCCHHHHHHHHHHHhcCCCCC----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHh
Q 007404 541 TLNPRERQVVRWRFGLEDGRM----KTLQEIGELMGVSRERIRQIESSAFRKLKNKKR 594 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~~----~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~ 594 (605)
.||+....||.-.|...-..| ..-.+||..+|+|...|......+..|+++.+.
T Consensus 11 ~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~ 68 (89)
T 2lk2_A 11 MLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDML 68 (89)
T ss_dssp CCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHH
Confidence 378888888887776531112 344689999999999999999999999988654
No 385
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=46.20 E-value=1.4e+02 Score=26.49 Aligned_cols=25 Identities=8% Similarity=-0.033 Sum_probs=21.5
Q ss_pred CCHHHHHHhcCCCHHHHHHHHhCCC
Q 007404 469 PNNEEVAEATGLSMKRLHAVLLSPK 493 (605)
Q Consensus 469 PT~eEIAe~lgis~e~V~~~l~~~~ 493 (605)
-+..+||+.+|++...|..++....
T Consensus 42 ~s~~~IA~~lgis~~TV~rwl~r~~ 66 (159)
T 2k27_A 42 VRPCDISRQLRVSHGCVSKILGRYY 66 (159)
T ss_dssp CCHHHHHHHHTCCSHHHHHHHCCSS
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4788999999999999999987543
No 386
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=46.14 E-value=22 Score=27.87 Aligned_cols=51 Identities=12% Similarity=0.141 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhH
Q 007404 542 LNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 592 (605)
Q Consensus 542 L~~rER~VL~LRyGl~dg-~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 592 (605)
+++.+..+|...|..+.. ......+||..+|++...|......-..|.|+.
T Consensus 14 ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2da2_A 14 FTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKS 65 (70)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhc
Confidence 567777788877766422 113467899999999999999998888777653
No 387
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=46.09 E-value=14 Score=36.55 Aligned_cols=37 Identities=8% Similarity=0.157 Sum_probs=26.7
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHH
Q 007404 546 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIE 582 (605)
Q Consensus 546 ER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie 582 (605)
+|-+=.|.+....+.++|+.|||+.+|+++.+|..++
T Consensus 6 ~Ral~IL~~l~~~~~~lsl~eia~~lgl~ksT~~RlL 42 (260)
T 3r4k_A 6 SKALTLLTYFNHGRLEIGLSDLTRLSGMNKATVYRLM 42 (260)
T ss_dssp HHHHHHHTTCBTTBSEEEHHHHHHHHCSCHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHH
Confidence 3444444444444467999999999999999999544
No 388
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=45.78 E-value=58 Score=25.68 Aligned_cols=53 Identities=11% Similarity=0.193 Sum_probs=40.5
Q ss_pred cCCHHHHHHHHHHHhc-CCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHH
Q 007404 541 TLNPRERQVVRWRFGL-EDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 593 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl-~dg-~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l 593 (605)
.+++.+..+|...|.. +.. ......+||..+|++...|.....+-..|.|+..
T Consensus 8 ~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 8 GPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp SCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 3677788888888863 422 1134678999999999999999988888888754
No 389
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=45.77 E-value=14 Score=36.67 Aligned_cols=22 Identities=18% Similarity=0.199 Sum_probs=19.4
Q ss_pred CCCHHHHHHHHCCCHHHHHHHH
Q 007404 561 MKTLQEIGELMGVSRERIRQIE 582 (605)
Q Consensus 561 ~~Tl~EIAe~LGISrerVRqie 582 (605)
..|+.+||+..|||+.++..+.
T Consensus 140 ~~T~~~IA~~AGvs~gtlY~yF 161 (311)
T 4ich_A 140 NVRIHDIASELGTSNATIHYHF 161 (311)
T ss_dssp GCCHHHHHHHHTCCHHHHHHHC
T ss_pred cCCHHHHHHHhCCCchhHHHhC
Confidence 3899999999999999997653
No 390
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=45.52 E-value=28 Score=34.39 Aligned_cols=45 Identities=18% Similarity=0.116 Sum_probs=35.0
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 007404 541 TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 590 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR 590 (605)
.|++.|-.||..-+..+ +.+.|..|||+.+++++.+|. +.+++|-
T Consensus 155 gLt~~q~~vL~~L~~~~-~~~~t~~eLa~~l~i~~~tvt----~~v~rLe 199 (250)
T 1p4x_A 155 TLSFVEFTILAIITSQN-KNIVLLKDLIETIHHKYPQTV----RALNNLK 199 (250)
T ss_dssp SSCHHHHHHHHHHHTTT-TCCEEHHHHHHHSSSCHHHHH----HHHHHHH
T ss_pred CCCHHHHHHHHHHHhCC-CCCcCHHHHHHHHCCChhhHH----HHHHHHH
Confidence 59999998887765433 335999999999999999999 4455554
No 391
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=45.43 E-value=36 Score=27.58 Aligned_cols=52 Identities=13% Similarity=0.112 Sum_probs=40.3
Q ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhH
Q 007404 541 TLNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 592 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg-~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 592 (605)
.+++.+..+|...|..+.. ......+||..+|++...|.....+-..|.|+.
T Consensus 26 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 78 (81)
T 1b8i_A 26 TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKE 78 (81)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhh
Confidence 4777888888888866532 113467899999999999999998888888764
No 392
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.39 E-value=35 Score=28.31 Aligned_cols=52 Identities=12% Similarity=-0.011 Sum_probs=39.2
Q ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhH
Q 007404 541 TLNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 592 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg-~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 592 (605)
..++.|..+|...|..+.. ......+||..+|++...|..+..+-..|.|+.
T Consensus 19 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~ 71 (89)
T 2dmp_A 19 EKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSM 71 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTS
T ss_pred cCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHH
Confidence 3577777788877766522 113567899999999999999998888777753
No 393
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=45.27 E-value=49 Score=27.53 Aligned_cols=26 Identities=8% Similarity=0.138 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Q 007404 560 RMKTLQEIGELMGVSRERIRQIESSA 585 (605)
Q Consensus 560 ~~~Tl~EIAe~LGISrerVRqie~RA 585 (605)
.+.|+++||+.+|+|+.++..+..+.
T Consensus 19 ~~~~~~~lA~~~~~S~~~l~r~fk~~ 44 (107)
T 2k9s_A 19 SNFDIASVAQHVCLSPSRLSHLFRQQ 44 (107)
T ss_dssp SSCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 35999999999999999999777764
No 394
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=45.19 E-value=30 Score=33.24 Aligned_cols=44 Identities=11% Similarity=0.012 Sum_probs=31.0
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 007404 539 LDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES 583 (605)
Q Consensus 539 L~~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~ 583 (605)
..-|+..||-.=..+... .|...+.+++|+.+|||+..|...+.
T Consensus 21 ~rplS~yErg~~y~r~L~-~g~~~~Q~~lA~~~giS~a~VSR~L~ 64 (189)
T 3mky_B 21 YRPTSAYERGQRYASRLQ-NEFAGNISALADAENISRKIITRCIN 64 (189)
T ss_dssp --CCCHHHHHHHHHHHHH-TTTTTCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHh-cCcccCHHHHHHHHCCCHHHHHHHHH
Confidence 345777777666666543 34447999999999999999985443
No 395
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=44.77 E-value=12 Score=37.35 Aligned_cols=25 Identities=12% Similarity=0.187 Sum_probs=19.1
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHH
Q 007404 558 DGRMKTLQEIGELMGVSRERIRQIE 582 (605)
Q Consensus 558 dg~~~Tl~EIAe~LGISrerVRqie 582 (605)
.+.++|+.|||+.+|+++.+|..++
T Consensus 42 ~~~~ltl~eia~~lgl~ksTv~RlL 66 (275)
T 3mq0_A 42 SPRDLTAAELTRFLDLPKSSAHGLL 66 (275)
T ss_dssp CSSCEEHHHHHHHHTCC--CHHHHH
T ss_pred CCCCCCHHHHHHHHCcCHHHHHHHH
Confidence 3456999999999999999999443
No 396
>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=44.76 E-value=4.6 Score=36.78 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=0.0
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 007404 562 KTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRqie~R 584 (605)
+|.+|||+.+|||+.+|.+++..
T Consensus 15 ltq~elA~~lgis~~~vs~~e~G 37 (158)
T 2p5t_A 15 LTQLEFARIVGISRNSLSRYENG 37 (158)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHHCcCHHHHHHHHCC
Confidence 89999999999999999998753
No 397
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=44.56 E-value=10 Score=32.51 Aligned_cols=25 Identities=16% Similarity=0.391 Sum_probs=22.2
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHH
Q 007404 562 KTLQEIGELMGVSRERIRQIESSAF 586 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRqie~RAL 586 (605)
+|..|+|+.+|||..|+|.++...+
T Consensus 3 ~~i~e~A~~~gvs~~tLR~ye~~Gl 27 (109)
T 1r8d_A 3 YQVKQVAEISGVSIRTLHHYDNIEL 27 (109)
T ss_dssp BCHHHHHHHHSCCHHHHHHHHHTTS
T ss_pred ccHHHHHHHHCcCHHHHHHHHHCCC
Confidence 7999999999999999999887543
No 398
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=44.38 E-value=14 Score=29.42 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=21.0
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 007404 562 KTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRqie~R 584 (605)
.|+.++|+.+|||+.+|+++++.
T Consensus 28 ~sq~~lA~~~gis~~~is~~E~g 50 (86)
T 2ofy_A 28 MSMVTVAFDAGISVETLRKIETG 50 (86)
T ss_dssp SCHHHHHHHHTCCHHHHHHHHTT
T ss_pred CCHHHHHHHhCCCHHHHHHHHcC
Confidence 38999999999999999999874
No 399
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=44.19 E-value=13 Score=35.63 Aligned_cols=23 Identities=9% Similarity=0.286 Sum_probs=21.7
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 007404 562 KTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRqie~R 584 (605)
+|.+|+|+.+|+|+.+|+++++.
T Consensus 31 ~t~~~lA~~~gis~~~i~~~~~g 53 (236)
T 3bdn_A 31 LSQESVADKMGMGQSGVGALFNG 53 (236)
T ss_dssp CCSHHHHHHHTSCHHHHHHHTTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 89999999999999999999875
No 400
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=44.03 E-value=29 Score=31.18 Aligned_cols=46 Identities=20% Similarity=0.021 Sum_probs=32.7
Q ss_pred cCCHHHHHHHHHHHhc-C-CCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q 007404 541 TLNPRERQVVRWRFGL-E-DGRMKTLQEIGELMGVSRERIRQIESSAF 586 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl-~-dg~~~Tl~EIAe~LGISrerVRqie~RAL 586 (605)
.|++.|-.||..-+.. + +....|.++||+.+|+|...|-+++.+=+
T Consensus 29 gLs~~E~~lLl~L~~~~~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~ 76 (135)
T 2v79_A 29 GLNETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFI 76 (135)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 5888887766554442 2 22447999999999999999995554433
No 401
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=43.98 E-value=28 Score=31.31 Aligned_cols=27 Identities=15% Similarity=0.396 Sum_probs=21.7
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 561 MKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 561 ~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
++++.||++.+|||+.+|.+ .|++|.+
T Consensus 37 ~~~~~eLa~~lgis~~tls~----~L~~Le~ 63 (146)
T 2f2e_A 37 LTRFGEFQKSLGLAKNILAA----RLRNLVE 63 (146)
T ss_dssp CCSHHHHHHHHCCCHHHHHH----HHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHH----HHHHHHH
Confidence 48999999999999999994 4455543
No 402
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=43.78 E-value=10 Score=32.45 Aligned_cols=47 Identities=19% Similarity=0.160 Sum_probs=34.3
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHC----CCHHHHHHHHHHHHHHHHh
Q 007404 538 VLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMG----VSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 538 aL~~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LG----ISrerVRqie~RALkKLR~ 591 (605)
....|++.|..||..-+-.+ +.|..||++.++ ++..+|. +.|++|-+
T Consensus 29 ~~~~LT~~e~~VL~~L~~~~---~~t~~eL~~~l~~~~~~s~sTVt----~~L~rLe~ 79 (99)
T 2k4b_A 29 VEFNVSNAELIVMRVIWSLG---EARVDEIYAQIPQELEWSLATVK----TLLGRLVK 79 (99)
T ss_dssp --CCCCCSCSHHHHHHHHHS---CEEHHHHHHTCCGGGCCCHHHHH----HHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHhCC---CCCHHHHHHHHhcccCCCHhhHH----HHHHHHHH
Confidence 34569999999988766432 499999999997 5789998 44555543
No 403
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=43.57 E-value=60 Score=26.66 Aligned_cols=25 Identities=16% Similarity=0.115 Sum_probs=22.4
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHH
Q 007404 561 MKTLQEIGELMGVSRERIRQIESSA 585 (605)
Q Consensus 561 ~~Tl~EIAe~LGISrerVRqie~RA 585 (605)
+.|+.+||+.+|+|+.++.+...+.
T Consensus 19 ~~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 19 QFTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4999999999999999999877765
No 404
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=43.27 E-value=55 Score=27.88 Aligned_cols=48 Identities=17% Similarity=0.211 Sum_probs=32.9
Q ss_pred hcCCHHHHHHHH-HHHhc--CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 540 DTLNPRERQVVR-WRFGL--EDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 540 ~~L~~rER~VL~-LRyGl--~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
..|++-+-.|+. |.... -.|.+.++.+||+.+++++.+++ |.+.+|.+
T Consensus 12 ~gl~~~q~~vL~~L~~~~~~~~g~~~s~~eLa~~l~l~~stLs----R~l~rLe~ 62 (96)
T 2obp_A 12 DGIDPAIVEVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLR----RVLTQLQA 62 (96)
T ss_dssp -CCCHHHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHhCCchhhHH----HHHHHHHH
Confidence 357777777776 44331 12345899999999999999999 55555543
No 405
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=43.26 E-value=14 Score=29.81 Aligned_cols=23 Identities=17% Similarity=0.398 Sum_probs=21.6
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 007404 562 KTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRqie~R 584 (605)
+|..|+|+.+|||..|+|..+.+
T Consensus 6 ~~i~e~A~~~gvs~~tlR~ye~~ 28 (81)
T 2jml_A 6 LRIRTIARMTGIREATLRAWERR 28 (81)
T ss_dssp EEHHHHHHTTSTTHHHHHHHHHH
T ss_pred ccHHHHHHHHCcCHHHHHHHHHh
Confidence 89999999999999999998876
No 406
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=43.22 E-value=90 Score=27.00 Aligned_cols=63 Identities=13% Similarity=0.083 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHhcCCCHHHHHHHHh
Q 007404 420 TYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLL 490 (605)
Q Consensus 420 TYA~~wIRqaI~r~ir~~sr~IRlP~~~~~~i~ki~ka~~~L~~elgr~PT~eEIAe~lgis~e~V~~~l~ 490 (605)
.|..+.+.+.+.+.+.+.-....++......+.-+ ...+...+..+||+.++++...+..++.
T Consensus 14 ~~~l~~~~~~~~~~~~~~l~~~glt~~q~~vL~~l--------~~~~~~~t~~eLa~~l~i~~~tvs~~l~ 76 (150)
T 3fm5_A 14 GFLLSRVGGMVLGAVNKALVPTGLRVRSYSVLVLA--------CEQAEGVNQRGVAATMGLDPSQIVGLVD 76 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHH--------HHSTTCCCSHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH--------HhCCCCcCHHHHHHHHCCCHhHHHHHHH
Confidence 45555555666665555433333433222222211 1223334999999999999999988764
No 407
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=42.84 E-value=34 Score=31.62 Aligned_cols=50 Identities=10% Similarity=0.030 Sum_probs=31.3
Q ss_pred HHHhcCCHHHHH-HHHHHHhcCCCCCCCHHHHHHHHC-CCHHHHHHHHHHHHHHHHh
Q 007404 537 KVLDTLNPRERQ-VVRWRFGLEDGRMKTLQEIGELMG-VSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 537 ~aL~~L~~rER~-VL~LRyGl~dg~~~Tl~EIAe~LG-ISrerVRqie~RALkKLR~ 591 (605)
+.+.-|....|. ||.+-.+. .....|..||++.++ ||+.+|++ -|+.|.+
T Consensus 21 ~~~~~l~~~tR~~IL~~Ll~~-p~~~~ta~eL~~~l~~lS~aTVyr----hL~~L~e 72 (151)
T 3u1d_A 21 ERRRFVLHETRLDVLHQILAQ-PDGVLSVEELLYRNPDETEANLRY----HVDELVD 72 (151)
T ss_dssp HHHHHHCCHHHHHHHHHHHHS-TTSCBCHHHHHHHCTTSCHHHHHH----HHHHHHH
T ss_pred HHHHHhcchHHHHHHHHHHcC-CCCCCCHHHHHHhcCCCCHHHHHH----HHHHHHH
Confidence 334444444544 44443333 233479999999999 99999994 4455544
No 408
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=42.65 E-value=35 Score=28.53 Aligned_cols=25 Identities=12% Similarity=0.161 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHH
Q 007404 561 MKTLQEIGELMGVSRERIRQIESSA 585 (605)
Q Consensus 561 ~~Tl~EIAe~LGISrerVRqie~RA 585 (605)
+.|+.+||+.+|+|+.++.....+.
T Consensus 21 ~~~~~~lA~~~~~S~~~l~r~fk~~ 45 (108)
T 3oou_A 21 GMSLKTLGNDFHINAVYLGQLFQKE 45 (108)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3999999999999999999877665
No 409
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=42.53 E-value=33 Score=26.99 Aligned_cols=51 Identities=6% Similarity=0.051 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHHHhcCCCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhH
Q 007404 542 LNPRERQVVRWRFGLEDGR-MKTLQEIGELMGVSRERIRQIESSAFRKLKNK 592 (605)
Q Consensus 542 L~~rER~VL~LRyGl~dg~-~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 592 (605)
+++.+..+|...|-.+... .....+||..+|++...|+.+...-..|.|+.
T Consensus 16 ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 67 (75)
T 2m0c_A 16 FTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKR 67 (75)
T ss_dssp SCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHH
Confidence 5666777777777554221 13567899999999999999999988887764
No 410
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=42.18 E-value=67 Score=26.22 Aligned_cols=50 Identities=20% Similarity=0.191 Sum_probs=38.2
Q ss_pred cCCHHHHHHHHHHHhc---CCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 007404 541 TLNPRERQVVRWRFGL---EDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLK 590 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl---~dg-~~~Tl~EIAe~LGISrerVRqie~RALkKLR 590 (605)
.+++.+..+|.-.|.. +.. ......+||..+|++...|+.+......|.|
T Consensus 33 ~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 33 RFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp CCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 5788888888888876 321 1124568999999999999999988877765
No 411
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=41.86 E-value=42 Score=27.51 Aligned_cols=51 Identities=12% Similarity=0.096 Sum_probs=39.8
Q ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 541 TLNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg-~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
.+++.+..+|...|..+.. ......+||..+|++...|......-..|.|+
T Consensus 34 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk 85 (88)
T 2r5y_A 34 SYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKK 85 (88)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHh
Confidence 4788888888888865422 11346789999999999999999888888775
No 412
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=41.70 E-value=22 Score=27.98 Aligned_cols=50 Identities=10% Similarity=0.034 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 542 LNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 542 L~~rER~VL~LRyGl~dg-~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
+++.+..+|...|..+.. ......+||..+|++...|.....+-..|.|+
T Consensus 14 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk 64 (70)
T 2cra_A 14 YSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 64 (70)
T ss_dssp SCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTS
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcc
Confidence 566777788777765422 11346789999999999999999887777665
No 413
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=41.69 E-value=25 Score=27.16 Aligned_cols=51 Identities=20% Similarity=0.169 Sum_probs=37.8
Q ss_pred cCCHHHHHHHHHHHhcCCCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 541 TLNPRERQVVRWRFGLEDGR-MKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~-~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
.+++.+..+|.-.|..+... .....+||..+|+|...|......-..|.|+
T Consensus 9 ~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (66)
T 1bw5_A 9 VLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 60 (66)
T ss_dssp CCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSS
T ss_pred CCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhH
Confidence 35777888888888665321 1246789999999999999998887776554
No 414
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=41.45 E-value=43 Score=27.87 Aligned_cols=37 Identities=16% Similarity=0.224 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHhcCCCHHHHHHHHh
Q 007404 454 VKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLL 490 (605)
Q Consensus 454 i~ka~~~L~~elgr~PT~eEIAe~lgis~e~V~~~l~ 490 (605)
+.++..-+.......++.++||+.+|+|...+....+
T Consensus 4 i~~~~~~i~~~~~~~~~~~~lA~~~~~s~~~l~r~fk 40 (108)
T 3mn2_A 4 VRQVEEYIEANWMRPITIEKLTALTGISSRGIFKAFQ 40 (108)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHcccCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 3445555666667778999999999999999988865
No 415
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=41.24 E-value=21 Score=27.38 Aligned_cols=50 Identities=10% Similarity=0.130 Sum_probs=35.3
Q ss_pred cCCHHHHHHHHHHHh---cCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 007404 541 TLNPRERQVVRWRFG---LEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLK 590 (605)
Q Consensus 541 ~L~~rER~VL~LRyG---l~dg-~~~Tl~EIAe~LGISrerVRqie~RALkKLR 590 (605)
.+++.+..+|.-.|. .+.. ......+||..+|++...|.........|.|
T Consensus 9 ~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~k 62 (64)
T 1du6_A 9 HMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 62 (64)
T ss_dssp SSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSS
T ss_pred cCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhc
Confidence 357778888888873 2211 1134578999999999999998877765544
No 416
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.93 E-value=35 Score=27.25 Aligned_cols=51 Identities=14% Similarity=0.136 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhH
Q 007404 542 LNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKNK 592 (605)
Q Consensus 542 L~~rER~VL~LRyGl~dg-~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 592 (605)
.++.|..+|...|..+.. ......+||..+|++...|..+..+-..|.|+.
T Consensus 14 ~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~ 65 (75)
T 2da5_A 14 RAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAE 65 (75)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHS
T ss_pred CCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHh
Confidence 566777778777766532 113467899999999999999998877777763
No 417
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=40.89 E-value=22 Score=28.13 Aligned_cols=53 Identities=9% Similarity=0.102 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHh
Q 007404 542 LNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKR 594 (605)
Q Consensus 542 L~~rER~VL~LRyGl~dg-~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~ 594 (605)
+++.+..+|...|-.+.. ......+||..+|++...|+.....-..|.|+.-.
T Consensus 13 ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 66 (74)
T 2ly9_A 13 KTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKS 66 (74)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTC
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCc
Confidence 566677777777765422 11356789999999999999999988888776443
No 418
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=40.84 E-value=35 Score=28.47 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHH
Q 007404 561 MKTLQEIGELMGVSRERIRQIESSA 585 (605)
Q Consensus 561 ~~Tl~EIAe~LGISrerVRqie~RA 585 (605)
+.|+.+||+.+|+|+.++..+.++.
T Consensus 18 ~~~~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 18 PITIEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3999999999999999999877765
No 419
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=40.81 E-value=29 Score=26.48 Aligned_cols=51 Identities=14% Similarity=0.212 Sum_probs=37.4
Q ss_pred cCCHHHHHHHHHHHhcCCCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 541 TLNPRERQVVRWRFGLEDGR-MKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~-~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
.+++.+..+|...|..+... .....+||..+|++...|.....+-..|.|+
T Consensus 9 ~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr 60 (62)
T 2vi6_A 9 VFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKR 60 (62)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGG
T ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhh
Confidence 46777888888888665321 1346789999999999999988776655543
No 420
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=40.50 E-value=26 Score=33.60 Aligned_cols=47 Identities=21% Similarity=0.381 Sum_probs=31.1
Q ss_pred HHHhcCC-HHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 537 KVLDTLN-PRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 537 ~aL~~L~-~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
.++..|. +-...||.+-. + .++|..||++.+|+|..+|.+ .|++|.+
T Consensus 7 ~ilkaL~~~~rl~IL~~L~--~--~~~s~~eLa~~l~is~stvs~----hLk~Le~ 54 (202)
T 2p4w_A 7 RLLDVLGNETRRRILFLLT--K--RPYFVSELSRELGVGQKAVLE----HLRILEE 54 (202)
T ss_dssp HHHHHHHSHHHHHHHHHHH--H--SCEEHHHHHHHHTCCHHHHHH----HHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHH--h--CCCCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 3444444 44455665432 2 249999999999999999994 4555554
No 421
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=40.45 E-value=29 Score=29.56 Aligned_cols=32 Identities=16% Similarity=0.285 Sum_probs=22.0
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHH
Q 007404 546 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQ 580 (605)
Q Consensus 546 ER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRq 580 (605)
|+.+|..-+-..+ -...+.|+.||||+.+++.
T Consensus 59 Er~~I~~aL~~~~---gn~~~AA~~LGIsR~TL~r 90 (98)
T 1eto_A 59 EQPLLDMVMQYTL---GNQTRAALMMGINRGTLRK 90 (98)
T ss_dssp HHHHHHHHHHHTT---TCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHhC---CCHHHHHHHhCCCHHHHHH
Confidence 4555544333333 3678999999999999983
No 422
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=40.02 E-value=40 Score=33.13 Aligned_cols=23 Identities=13% Similarity=0.264 Sum_probs=21.8
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 007404 562 KTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRqie~R 584 (605)
+|..+||+.+|||..+|.++++.
T Consensus 45 ltQ~evA~~tGISqS~ISq~e~~ 67 (221)
T 2h8r_A 45 IPQREVVDVTGLNQSHLSQHLNK 67 (221)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHTT
T ss_pred CCHHHHHHHhCCCHHHHHHHHhC
Confidence 89999999999999999999973
No 423
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=39.34 E-value=24 Score=31.28 Aligned_cols=27 Identities=22% Similarity=0.425 Sum_probs=21.6
Q ss_pred CCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHh
Q 007404 561 MKTLQEIGELM-GVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 561 ~~Tl~EIAe~L-GISrerVRqie~RALkKLR~ 591 (605)
++++.||++.+ |||+.+|.++ |++|.+
T Consensus 48 ~~~~~eLa~~l~gis~~tls~~----L~~Le~ 75 (131)
T 1yyv_A 48 THRFSDLRRXMGGVSEXMLAQS----LQALEQ 75 (131)
T ss_dssp CEEHHHHHHHSTTCCHHHHHHH----HHHHHH
T ss_pred CCCHHHHHHHhccCCHHHHHHH----HHHHHH
Confidence 49999999999 7999999944 455543
No 424
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=39.30 E-value=1.7e+02 Score=24.78 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=21.1
Q ss_pred CCCCCHHHHHHhcCCCHHHHHHHHh
Q 007404 466 GRHPNNEEVAEATGLSMKRLHAVLL 490 (605)
Q Consensus 466 gr~PT~eEIAe~lgis~e~V~~~l~ 490 (605)
+...+..+||+.+|++...|..++.
T Consensus 50 ~~~~t~~~la~~l~~s~~~vs~~l~ 74 (146)
T 2fbh_A 50 RDSPTQRELAQSVGVEGPTLARLLD 74 (146)
T ss_dssp SSCCBHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHhCCChhhHHHHHH
Confidence 3456899999999999999988764
No 425
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=39.18 E-value=1.3e+02 Score=25.50 Aligned_cols=24 Identities=17% Similarity=0.202 Sum_probs=21.1
Q ss_pred CCCCHHHHHHhcCCCHHHHHHHHh
Q 007404 467 RHPNNEEVAEATGLSMKRLHAVLL 490 (605)
Q Consensus 467 r~PT~eEIAe~lgis~e~V~~~l~ 490 (605)
..-|.+|||+.+|+|...|...+.
T Consensus 38 e~~s~~EIA~~lgiS~~tVr~~~~ 61 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTRERIRQIEA 61 (99)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 567999999999999999988764
No 426
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=39.04 E-value=49 Score=27.55 Aligned_cols=72 Identities=24% Similarity=0.301 Sum_probs=41.3
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHHhhhccCCcCCCcchhHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHH
Q 007404 380 SIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARK 459 (605)
Q Consensus 380 sIAkrY~~~g~d~eDLIQEG~IGLirA~ekFDp~kG~rFSTYA~~wIRqaI~r~ir~~sr~IRlP~~~~~~i~ki~ka~~ 459 (605)
.+.........+++||.+...+.--.--..|.-..|..|..|+..+ ++.+|..
T Consensus 12 ~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~~~~~~~~---------------------------Rl~~A~~ 64 (108)
T 3oou_A 12 SYITEHFSEGMSLKTLGNDFHINAVYLGQLFQKEMGEHFTDYLNRY---------------------------RVNYAKE 64 (108)
T ss_dssp HHHHHHTTSCCCHHHHHHHHTSCHHHHHHHHHHHHSSCHHHHHHHH---------------------------HHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHH---------------------------HHHHHHH
Confidence 3333444456889999887666554444455444555555554332 3344444
Q ss_pred HHHHHcCCCCCHHHHHHhcCCC
Q 007404 460 QLYSENGRHPNNEEVAEATGLS 481 (605)
Q Consensus 460 ~L~~elgr~PT~eEIAe~lgis 481 (605)
.|.. ..-++.|||..+|.+
T Consensus 65 lL~~---~~~si~~IA~~~Gf~ 83 (108)
T 3oou_A 65 ELLQ---TKDNLTIIAGKSGYT 83 (108)
T ss_dssp HHHH---CCCCHHHHHHHTTCC
T ss_pred HHHc---CCCCHHHHHHHcCCC
Confidence 4432 234788899988874
No 427
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=38.79 E-value=34 Score=27.13 Aligned_cols=52 Identities=8% Similarity=-0.013 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHH
Q 007404 542 LNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 593 (605)
Q Consensus 542 L~~rER~VL~LRyGl~dg-~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l 593 (605)
+++.+..+|...|..+.. ......+||..+|++...|..+...-..|.|+..
T Consensus 14 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 14 YTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp SCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 566777778777765532 1134578999999999999999988888877643
No 428
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=38.58 E-value=50 Score=27.76 Aligned_cols=45 Identities=13% Similarity=-0.040 Sum_probs=27.6
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHHhhhccCCcCCCcchhHHHH
Q 007404 380 SIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 424 (605)
Q Consensus 380 sIAkrY~~~g~d~eDLIQEG~IGLirA~ekFDp~kG~rFSTYA~~ 424 (605)
.+.........+++||.+...+.--.--..|.-..|..|..|+..
T Consensus 14 ~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~~~~~~~ 58 (113)
T 3oio_A 14 SLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQYLGTVPSKYYLE 58 (113)
T ss_dssp HHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHH
Confidence 334444455688999988876655555555555556666655444
No 429
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=38.40 E-value=40 Score=31.58 Aligned_cols=37 Identities=19% Similarity=0.213 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHhcCCCHHHHHHHHh
Q 007404 454 VKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLL 490 (605)
Q Consensus 454 i~ka~~~L~~elgr~PT~eEIAe~lgis~e~V~~~l~ 490 (605)
+...-.++..+.|..||..|||+.+|++...+...+.
T Consensus 10 il~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~ 46 (196)
T 3k2z_A 10 VLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHLI 46 (196)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHH
Confidence 3344445556788999999999999999887777653
No 430
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=38.31 E-value=60 Score=33.63 Aligned_cols=34 Identities=12% Similarity=0.098 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHH
Q 007404 560 RMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 593 (605)
Q Consensus 560 ~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l 593 (605)
.+.|.+|||+..|||..|||+....-+..+-+.+
T Consensus 291 ~~~t~~eIa~v~~Vse~TIr~rykel~~~~~~l~ 324 (345)
T 4bbr_M 291 IPITAAKVGQTLQVTEGTIKSGYKILYEHRDKLV 324 (345)
T ss_dssp ----------------------------------
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Confidence 3489999999999999999977766666555544
No 431
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=38.19 E-value=59 Score=25.21 Aligned_cols=37 Identities=16% Similarity=0.115 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHhcCCCHHHHHHHHh
Q 007404 454 VKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLL 490 (605)
Q Consensus 454 i~ka~~~L~~elgr~PT~eEIAe~lgis~e~V~~~l~ 490 (605)
+....+++..-....-+..|||+.+|++...|...+.
T Consensus 17 L~~~e~~vl~l~~~g~s~~eIA~~l~is~~tV~~~~~ 53 (79)
T 1x3u_A 17 LSERERQVLSAVVAGLPNKSIAYDLDISPRTVEVHRA 53 (79)
T ss_dssp HCHHHHHHHHHHTTTCCHHHHHHHTTSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3334444444456677999999999999999887654
No 432
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.18 E-value=23 Score=27.80 Aligned_cols=50 Identities=12% Similarity=0.199 Sum_probs=36.9
Q ss_pred CCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 542 LNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 542 L~~rER~VL~LRyGl~dg-~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
+++.+..+|...|..+.. ......+||..+|++...|......-..|.|+
T Consensus 14 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 64 (70)
T 2djn_A 14 YSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKK 64 (70)
T ss_dssp SCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcc
Confidence 567777788877755421 11346789999999999999998877766554
No 433
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=38.13 E-value=24 Score=29.68 Aligned_cols=47 Identities=13% Similarity=0.174 Sum_probs=29.4
Q ss_pred HHHhcCCHHHHH-HHHHHHhcCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHh
Q 007404 537 KVLDTLNPRERQ-VVRWRFGLEDGRMKTLQEIGELM-GVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 537 ~aL~~L~~rER~-VL~LRyGl~dg~~~Tl~EIAe~L-GISrerVRqie~RALkKLR~ 591 (605)
.++..+..+-+. ||..-+ + .++++.||++.+ |+|+.+|.+ .+++|.+
T Consensus 17 ~~l~~l~~~~~~~IL~~L~--~--~~~~~~eL~~~l~gis~~~ls~----~L~~Le~ 65 (107)
T 2fsw_A 17 KSMQIFAGKWTLLIIFQIN--R--RIIRYGELKRAIPGISEKMLID----ELKFLCG 65 (107)
T ss_dssp HHHHHHTSSSHHHHHHHHT--T--SCEEHHHHHHHSTTCCHHHHHH----HHHHHHH
T ss_pred HHHHHHcCccHHHHHHHHH--h--CCcCHHHHHHHcccCCHHHHHH----HHHHHHH
Confidence 344445554443 433322 2 249999999999 599999994 4455543
No 434
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=37.61 E-value=70 Score=27.53 Aligned_cols=72 Identities=8% Similarity=0.071 Sum_probs=40.1
Q ss_pred hhccCCcCCCcchhHHHHHHHHHHHHHHhhcc-ccccccccHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHhcCCCHHHH
Q 007404 407 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS-RTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 485 (605)
Q Consensus 407 ~ekFDp~kG~rFSTYA~~wIRqaI~r~ir~~s-r~IRlP~~~~~~i~ki~ka~~~L~~elgr~PT~eEIAe~lgis~e~V 485 (605)
..+|++.. +-.|..+++.+.+.+.+.+.. ....++......+..+ ...| ..+..+||+.+|++...+
T Consensus 4 M~~~~~~~---~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~iL~~l--------~~~~-~~t~~ela~~l~~~~~tv 71 (148)
T 3nrv_A 4 MQKINIDR---HATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIISVL--------SSAS-DCSVQKISDILGLDKAAV 71 (148)
T ss_dssp -CCSCGGG---CHHHHHHHHHHHHHHC----CCGGGTCCHHHHHHHHHH--------HHSS-SBCHHHHHHHHTCCHHHH
T ss_pred cccccHHH---HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH--------HcCC-CCCHHHHHHHHCCCHHHH
Confidence 34555542 345666667677766665532 2223433333222222 1223 678999999999999988
Q ss_pred HHHHh
Q 007404 486 HAVLL 490 (605)
Q Consensus 486 ~~~l~ 490 (605)
..++.
T Consensus 72 s~~l~ 76 (148)
T 3nrv_A 72 SRTVK 76 (148)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 435
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=37.40 E-value=2.1e+02 Score=25.26 Aligned_cols=76 Identities=9% Similarity=-0.002 Sum_probs=55.1
Q ss_pred C-CCCchHHHHHhhcCCHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHh-hhccCC
Q 007404 337 G-GSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG-AEKFDA 412 (605)
Q Consensus 337 G-~~pt~~ewA~a~g~d~~~L~~~l~~g~~A~e~LI~~nlrLVvsIAkrY~~~g~d~eDLIQEG~IGLirA-~ekFDp 412 (605)
| ...|+.+.|.++|++...+-.-..+-..-+..++..+..-+..........+.+..+.+...+..++.. +...++
T Consensus 31 G~~~~ti~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 108 (212)
T 3knw_A 31 GFVGVGLQEILKTSGVPKGSFYHYFESKEAFGCELLKHYISDYQIRLNQLWTTETSARDKLMNYLQCWVKDPATEQSW 108 (212)
T ss_dssp CSTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHC-------
T ss_pred CCccCCHHHHHHHhCCChHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhccc
Confidence 5 468999999999999999988888777777788877777766666666555778888887777777766 544443
No 436
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=37.37 E-value=36 Score=29.07 Aligned_cols=26 Identities=15% Similarity=0.362 Sum_probs=20.5
Q ss_pred CC--HHHHHHHH-CCCHHHHHHHHHHHHHHHHh
Q 007404 562 KT--LQEIGELM-GVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 562 ~T--l~EIAe~L-GISrerVRqie~RALkKLR~ 591 (605)
++ +.||++.+ |||..++.++ |++|.+
T Consensus 41 ~~~~~~eL~~~l~gis~~~ls~~----L~~Le~ 69 (111)
T 3df8_A 41 TRQNFNDIRSSIPGISSTILSRR----IKDLID 69 (111)
T ss_dssp SCBCHHHHHHTSTTCCHHHHHHH----HHHHHH
T ss_pred CCCCHHHHHHHccCCCHHHHHHH----HHHHHH
Confidence 56 99999999 9999999944 445543
No 437
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=37.37 E-value=27 Score=28.33 Aligned_cols=50 Identities=16% Similarity=0.229 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHhcCCCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 542 LNPRERQVVRWRFGLEDGR-MKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 542 L~~rER~VL~LRyGl~dg~-~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
+++.+..+|...|..+... .....+||..+|++...|..+...-..|.|+
T Consensus 29 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk 79 (84)
T 2kt0_A 29 FSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKR 79 (84)
T ss_dssp CCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTS
T ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 5666777777777654221 1246789999999999999998877776654
No 438
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=37.32 E-value=27 Score=29.26 Aligned_cols=23 Identities=17% Similarity=0.151 Sum_probs=21.4
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 007404 562 KTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRqie~R 584 (605)
++..++|+..|||+.++..|++.
T Consensus 33 ikQ~eLAK~iGIsqsTLSaIenG 55 (83)
T 2l1p_A 33 MNQSSLAKECPLSQSMISSIVNS 55 (83)
T ss_dssp SCHHHHHHHSSSCHHHHHHHHTC
T ss_pred cCHHHHHHHcCCCHHHHHHHHcC
Confidence 89999999999999999998864
No 439
>2z9m_A Response regulator YYCF; two-component system, YYCG, helix-turn- helix motif, DNA-binding domain, phosphorylation, transcription; 1.87A {Staphylococcus aureus} PDB: 2zxj_A 2d1v_A
Probab=37.32 E-value=60 Score=27.85 Aligned_cols=49 Identities=14% Similarity=0.144 Sum_probs=37.5
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH-C----CCHHHHHHHHHHHHHHHH
Q 007404 541 TLNPRERQVVRWRFGLEDGRMKTLQEIGELM-G----VSRERIRQIESSAFRKLK 590 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~L-G----ISrerVRqie~RALkKLR 590 (605)
.|+++|..+|.+-. ...|+..|.++|.+.+ | .+..+|++.+.+-.+||.
T Consensus 36 ~Lt~~E~~lL~~L~-~~~g~vvsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~ 89 (120)
T 2z9m_A 36 ELTHREFELFHYLS-KHMGQVMTREHLLQTVWGYDYFGDVRTVDVTIRRLREKIE 89 (120)
T ss_dssp CCCHHHHHHHHHHH-TTTTCCEEHHHHHHHHHCTTCCSCTHHHHHHHHHHHHHHC
T ss_pred eCCHHHHHHHHHHH-HCCCceEcHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhh
Confidence 58999999998754 5567889999999876 2 567788877766666664
No 440
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=37.02 E-value=45 Score=27.90 Aligned_cols=52 Identities=13% Similarity=0.127 Sum_probs=40.0
Q ss_pred cCCHHHHHHHHHHHhcCCCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhH
Q 007404 541 TLNPRERQVVRWRFGLEDGR-MKTLQEIGELMGVSRERIRQIESSAFRKLKNK 592 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~-~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 592 (605)
.+++.+..+|...|-..... .....+||..+|++...|+.....-..|.|+.
T Consensus 31 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~ 83 (96)
T 3nar_A 31 KKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNG 83 (96)
T ss_dssp SSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTT
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhh
Confidence 46778888888877654221 13567899999999999999999988888763
No 441
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=36.85 E-value=2.9 Score=37.05 Aligned_cols=29 Identities=10% Similarity=0.265 Sum_probs=23.8
Q ss_pred CCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 559 GRMK-TLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 559 g~~~-Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
|..+ |..++|+.||||+.+|| +|+.+|..
T Consensus 32 G~~lPs~~~La~~~~vSr~tvr----~Al~~L~~ 61 (126)
T 3ic7_A 32 EGRIPSVREYASIVEVNANTVM----RSYEYLQS 61 (126)
T ss_dssp TSEECCTTTTTTCC-CCSGGGH----HHHHHHHT
T ss_pred CCcCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 3445 89999999999999999 88888875
No 442
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=36.84 E-value=91 Score=27.83 Aligned_cols=48 Identities=17% Similarity=0.197 Sum_probs=35.2
Q ss_pred hcCCHHHHHHHHHHHhc-C--CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 540 DTLNPRERQVVRWRFGL-E--DGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 540 ~~L~~rER~VL~LRyGl-~--dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
..++++++.|...--+. + |.=..+++||++.+|++.+.|. +++++|+.
T Consensus 15 ~~~~~~~~~ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~eve----~vL~~iQ~ 65 (130)
T 2k9m_A 15 LELEGKEQELALELLNYLNEKGFLSKSVEEISDVLRCSVEELE----KVRQKVLR 65 (130)
T ss_dssp HHCCSHHHHHHHHHTTSBCTTSSBSSCHHHHHHHTTCCHHHHH----HHHHHHHT
T ss_pred ccCCHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHHHHH----HHHHHHhc
Confidence 36899998887654332 1 2234789999999999999887 66666664
No 443
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=36.74 E-value=1.1e+02 Score=27.45 Aligned_cols=63 Identities=11% Similarity=0.051 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHhcCCCHHHHHHHHh
Q 007404 420 TYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLL 490 (605)
Q Consensus 420 TYA~~wIRqaI~r~ir~~sr~IRlP~~~~~~i~ki~ka~~~L~~elgr~PT~eEIAe~lgis~e~V~~~l~ 490 (605)
.|..+.+.+.+.+.+...-....+.......+..+ ...+...+..|||+.+|++...|..++.
T Consensus 28 ~~~l~~~~~~~~~~~~~~l~~~glt~~q~~vL~~L--------~~~~~~~t~~eLa~~l~i~~~tvs~~l~ 90 (166)
T 3deu_A 28 GSDLARLVRIWRALIDHRLKPLELTQTHWVTLHNI--------HQLPPDQSQIQLAKAIGIEQPSLVRTLD 90 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTCCHHHHHHHHHH--------HHSCSSEEHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHH--------HHcCCCCCHHHHHHHHCCCHhhHHHHHH
Confidence 35555555666666655444334433322222221 1224456899999999999998888764
No 444
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.71 E-value=45 Score=28.44 Aligned_cols=47 Identities=9% Similarity=0.068 Sum_probs=36.0
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 007404 539 LDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 590 (605)
Q Consensus 539 L~~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR 590 (605)
+..|++.|+.|+.+-.-- |.+..+.++|...+|++..+|. +.|++|-
T Consensus 32 ~~~Lt~~E~lVy~~I~~a-Gn~GIw~kdL~~~tnL~~~~vt----kiLK~LE 78 (95)
T 2yu3_A 32 MKGSDNQEKLVYQIIEDA-GNKGIWSRDVRYKSNLPLTEIN----KILKNLE 78 (95)
T ss_dssp CCSCSHHHHHHHHHHHHH-TTSCEEHHHHHHHHTCCHHHHH----HHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHh-CCCCCCHHHHHHHhCCCHHHHH----HHHHHHH
Confidence 357888888888876543 3345999999999999998877 6666663
No 445
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=36.35 E-value=37 Score=35.86 Aligned_cols=56 Identities=18% Similarity=0.184 Sum_probs=40.5
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 531 MKEDLEKVLD--TLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 531 l~~~L~~aL~--~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
+...+...+. .|+..|-.||..-+.. .+.++|..|||+.+++++.+|. +.++||-+
T Consensus 389 ~~~~~~~~~~~~~lt~~q~~vl~~l~~~-~~~~~~~~~l~~~~~~~~~~~t----~~~~~le~ 446 (487)
T 1hsj_A 389 VKKFFRDTKKKFNLNYEEIYILNHILRS-ESNEISSKEIAKCSEFKPYYLT----KALQKLKD 446 (487)
T ss_dssp HHHHHHHHSSSCCCCHHHHHHHHHHHTC-SCSEEEHHHHHHSSCCCHHHHH----HHHHHHHT
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHhC-CCCCcCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 3444555554 4999998888776544 1234999999999999999998 55666644
No 446
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=36.21 E-value=53 Score=27.04 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=19.2
Q ss_pred CCHHHHHHhcCCCHHHHHHHHhC
Q 007404 469 PNNEEVAEATGLSMKRLHAVLLS 491 (605)
Q Consensus 469 PT~eEIAe~lgis~e~V~~~l~~ 491 (605)
-|..++|+.+|++...|..+..-
T Consensus 15 ltq~~lA~~~gis~~~i~~~e~g 37 (111)
T 1b0n_A 15 YSLSELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 47788999999998888888765
No 447
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=35.64 E-value=7.8 Score=36.39 Aligned_cols=33 Identities=9% Similarity=0.072 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 007404 547 RQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 547 R~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~R 584 (605)
+.|+.++ ..+ +|+.+||+.||||+.||..++.+
T Consensus 149 ~~i~~l~-~~G----~s~~~Ia~~l~vs~~Tvyr~l~~ 181 (193)
T 3uj3_X 149 EQAGRLL-AQG----IPRKQVALIYDVALSTLYKKHPA 181 (193)
T ss_dssp --------------------------------------
T ss_pred HHHHHHH-HcC----CCHHHHHHHHCcCHHHHHHHHHH
Confidence 4465553 233 89999999999999999966654
No 448
>3plo_X DNA-invertase; resolvase, helix-turn-helix, serine recombinase, recombination; 3.80A {Enterobacteria phage MU}
Probab=35.47 E-value=7.9 Score=36.47 Aligned_cols=33 Identities=9% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 007404 548 QVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSA 585 (605)
Q Consensus 548 ~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RA 585 (605)
.|+.+ |..+ +|..+||+.||+|+.||..++.+.
T Consensus 150 ~i~~l-~~~G----~s~~~Ia~~l~vs~~T~yr~l~~~ 182 (193)
T 3plo_X 150 QAGRL-LAQG----IPRKQVALIYDVALSTLYKKHPAK 182 (193)
T ss_dssp --------------------------------------
T ss_pred HHHHH-HHCC----CCHHHHHHHHCcCHHHHHHHHhhh
Confidence 45555 3333 899999999999999998665543
No 449
>2hqn_A Putative transcriptional regulator; phosporylation-independent response regulator, signaling Pro; NMR {Helicobacter pylori}
Probab=35.33 E-value=15 Score=31.16 Aligned_cols=50 Identities=8% Similarity=0.079 Sum_probs=38.2
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHh
Q 007404 541 TLNPRERQVVRWRFGLEDGRMKTLQEIGELM-----GVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~L-----GISrerVRqie~RALkKLR~ 591 (605)
.|+++|..+|.+-. ...|...|.++|.+.+ ..+..+|++.+.+-.+||..
T Consensus 29 ~Lt~~E~~lL~~L~-~~~g~~vsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~~ 83 (109)
T 2hqn_A 29 EVKGKPFEVLTHLA-RHRDQIVSKEQLLDAIWEEPEMVTPNVIEVAINQIRQKMDK 83 (109)
T ss_dssp ECCCSTHHHHHHHH-HHTCSEEEHHHHHHHHCCSCGGGCTTHHHHHHHHHHHHTTT
T ss_pred EcCHHHHHHHHHHH-HCCCeeEcHHHHHHHHcCCCCCCCcchHHHHHHHHHHHhcc
Confidence 48999999887654 4457789999999998 46778888777777766653
No 450
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=35.33 E-value=28 Score=31.93 Aligned_cols=22 Identities=0% Similarity=0.081 Sum_probs=20.9
Q ss_pred CHHHHHHHHCCCHHHHHHHHHH
Q 007404 563 TLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 563 Tl~EIAe~LGISrerVRqie~R 584 (605)
|.+|+|+.+|+|+.+|+++++.
T Consensus 22 tq~elA~~~Gis~~~i~~~e~g 43 (189)
T 2fjr_A 22 QKIQLANHFDIASSSLSNRYTR 43 (189)
T ss_dssp SHHHHHHHTTCCHHHHHHHHHS
T ss_pred CHHHHHHHhCcCHHHHHHHHhC
Confidence 9999999999999999999875
No 451
>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexi transcription; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B
Probab=35.21 E-value=30 Score=27.34 Aligned_cols=21 Identities=19% Similarity=0.094 Sum_probs=19.2
Q ss_pred CCHHHHHHHHCCCHHHHHHHH
Q 007404 562 KTLQEIGELMGVSRERIRQIE 582 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRqie 582 (605)
.++.+.|+.||||..+|++.+
T Consensus 14 ~s~t~aA~~L~vtQ~AVS~~i 34 (66)
T 2ovg_A 14 FGQTKTAKDLGVYPSSINQAI 34 (66)
T ss_dssp HCHHHHHHHHTSCHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHH
Confidence 489999999999999999875
No 452
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=35.13 E-value=14 Score=32.10 Aligned_cols=34 Identities=29% Similarity=0.132 Sum_probs=26.7
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q 007404 549 VVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAF 586 (605)
Q Consensus 549 VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RAL 586 (605)
||....+.. +|+.|.++.+|||.+.|.+++....
T Consensus 42 VV~~v~~g~----lS~~EAa~ry~Is~~ei~~W~r~y~ 75 (101)
T 2oa4_A 42 VVRGVIYGL----ITLAEAKQTYGLSDEEFNSWVSALA 75 (101)
T ss_dssp HHHHHHHTT----CCHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHhCC----CCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 554444333 9999999999999999999887653
No 453
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=34.92 E-value=47 Score=34.50 Aligned_cols=37 Identities=16% Similarity=0.116 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q 007404 547 RQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAF 586 (605)
Q Consensus 547 R~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RAL 586 (605)
+.||.+-+-. .+.|..|||+.+|+|+.||.++..+-+
T Consensus 19 ~~il~~l~~~---~~~sr~~la~~~~ls~~tv~~~v~~L~ 55 (406)
T 1z6r_A 19 GAVYRLIDQL---GPVSRIDLSRLAQLAPASITKIVHEML 55 (406)
T ss_dssp HHHHHHHHSS---CSCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHc---CCcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4566665432 359999999999999999997665433
No 454
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=34.87 E-value=59 Score=31.88 Aligned_cols=22 Identities=14% Similarity=0.338 Sum_probs=19.5
Q ss_pred CCCHHHHHHHHCCCHHHHHHHH
Q 007404 561 MKTLQEIGELMGVSRERIRQIE 582 (605)
Q Consensus 561 ~~Tl~EIAe~LGISrerVRqie 582 (605)
+.|.++||+.+|+++++|+..+
T Consensus 178 ~~t~~~la~~~~l~~~~V~~~l 199 (232)
T 2qlz_A 178 RATVEELSDRLNLKEREVREKI 199 (232)
T ss_dssp EEEHHHHHHHHTCCHHHHHHHH
T ss_pred CCCHHHHHHHhCcCHHHHHHHH
Confidence 3999999999999999999543
No 455
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=34.82 E-value=86 Score=26.63 Aligned_cols=62 Identities=8% Similarity=0.073 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHcC-CCCCHHHHHHhcCCCHHHHHHHHh
Q 007404 421 YAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLHAVLL 490 (605)
Q Consensus 421 YA~~wIRqaI~r~ir~~sr~IRlP~~~~~~i~ki~ka~~~L~~elg-r~PT~eEIAe~lgis~e~V~~~l~ 490 (605)
|..+.+.+.+.+.+........++......+.-+ ...+ ...+..+||+.+|++...+..++.
T Consensus 7 ~~l~~~~~~~~~~~~~~~~~~~lt~~~~~vL~~l--------~~~~~~~~t~~ela~~l~~~~~tvs~~l~ 69 (139)
T 3eco_A 7 YLFRMISHEMKQKADQKLEQFDITNEQGHTLGYL--------YAHQQDGLTQNDIAKALQRTGPTVSNLLR 69 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHH--------HHSTTTCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH--------HhcCCCCcCHHHHHHHhCCCcccHHHHHH
Confidence 4455555555555554433333433322222222 1223 356899999999999999888764
No 456
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=34.68 E-value=57 Score=27.83 Aligned_cols=45 Identities=18% Similarity=0.152 Sum_probs=35.7
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCCHHHHHH-HHCCCHHHHHHHHHHHHHHHHh
Q 007404 540 DTLNPRERQVVRWRFGLEDGRMKTLQEIGE-LMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 540 ~~L~~rER~VL~LRyGl~dg~~~Tl~EIAe-~LGISrerVRqie~RALkKLR~ 591 (605)
..|++-|-.||..-+..+ +.|..+||+ .+++.+.+|. |.++.|.+
T Consensus 12 ~~L~~~QfsiL~~L~~~~---~~t~~~Lae~~l~~drstvs----rnl~~L~r 57 (95)
T 1bja_A 12 DVLNEKTATILITIAKKD---FITAAEVREVHPDLGNAVVN----SNIGVLIK 57 (95)
T ss_dssp TSSCHHHHHHHHHHHHST---TBCHHHHHHTCTTSCHHHHH----HHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHCC---CCCHHHHHHHHhcccHHHHH----HHHHHHHH
Confidence 368988888887665443 589999999 9999999998 66666654
No 457
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=34.50 E-value=55 Score=27.28 Aligned_cols=53 Identities=6% Similarity=0.040 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHHh
Q 007404 542 LNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKR 594 (605)
Q Consensus 542 L~~rER~VL~LRyGl~dg-~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~ 594 (605)
+++.+..+|...|..+.. ......+||..+|++...|+.+...-..|.|+...
T Consensus 24 ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 77 (93)
T 3a01_A 24 FTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTA 77 (93)
T ss_dssp CCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhH
Confidence 455566677766655422 11345789999999999999999888888887654
No 458
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=33.92 E-value=53 Score=27.96 Aligned_cols=44 Identities=11% Similarity=0.011 Sum_probs=25.3
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHHhhhccCCcCCCcchhHHHH
Q 007404 380 SIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 424 (605)
Q Consensus 380 sIAkrY~~~g~d~eDLIQEG~IGLirA~ekFDp~kG~rFSTYA~~ 424 (605)
.+.........+++||.+...+.--.--..|.-. |..|..|+..
T Consensus 14 ~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~-G~s~~~~~~~ 57 (120)
T 3mkl_A 14 TVINNNIAHEWTLARIASELLMSPSLLKKKLREE-ETSYSQLLTE 57 (120)
T ss_dssp HHHHTSTTSCCCHHHHHHHTTCCHHHHHHHHHHT-TCCHHHHHHH
T ss_pred HHHHHhccCCCCHHHHHHHHCcCHHHHHHHHHHc-CCCHHHHHHH
Confidence 3333344456888888887666554444455444 6666555444
No 459
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=33.79 E-value=1.2e+02 Score=27.02 Aligned_cols=45 Identities=11% Similarity=0.259 Sum_probs=36.0
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHh
Q 007404 541 TLNPRERQVVRWRFGLEDGRMKTLQEIGELM-----GVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~L-----GISrerVRqie~RALkKLR~ 591 (605)
++++.-+.||.+-... +.+.|..||.+.+ +||..||. |.|+.|.+
T Consensus 19 r~T~qR~~Il~~L~~~--~~~~sa~ei~~~l~~~~~~is~aTVY----R~L~~L~e 68 (145)
T 2fe3_A 19 RITPQRHAILEYLVNS--MAHPTADDIYKALEGKFPNMSVATVY----NNLRVFRE 68 (145)
T ss_dssp CCCHHHHHHHHHHHHC--SSCCCHHHHHHHHGGGCTTCCHHHHH----HHHHHHHH
T ss_pred CCCHHHHHHHHHHHhC--CCCCCHHHHHHHHHHhCCCCChhhHH----HHHHHHHH
Confidence 5788777788776543 3569999999999 99999998 77777765
No 460
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=33.62 E-value=72 Score=26.16 Aligned_cols=33 Identities=12% Similarity=0.029 Sum_probs=25.6
Q ss_pred HHHHHHHcCC-CCCHHHHHHhcCCCHHHHHHHHh
Q 007404 458 RKQLYSENGR-HPNNEEVAEATGLSMKRLHAVLL 490 (605)
Q Consensus 458 ~~~L~~elgr-~PT~eEIAe~lgis~e~V~~~l~ 490 (605)
..-+.+.... .++.++||+.+|+|+..+....+
T Consensus 8 ~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk 41 (103)
T 3lsg_A 8 QNIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFK 41 (103)
T ss_dssp HHHHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3334445555 78999999999999999988865
No 461
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=33.13 E-value=92 Score=26.63 Aligned_cols=61 Identities=7% Similarity=-0.030 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHhcCCCHHHHHHHHh
Q 007404 421 YAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLL 490 (605)
Q Consensus 421 YA~~wIRqaI~r~ir~~sr~IRlP~~~~~~i~ki~ka~~~L~~elgr~PT~eEIAe~lgis~e~V~~~l~ 490 (605)
|..+.+.+.+.+.+........++......+.-+. .. ...+..|||+.+|++...+..++.
T Consensus 13 ~~l~~~~~~~~~~~~~~~~~~~lt~~~~~iL~~l~-------~~--~~~t~~eLa~~l~~~~~~vs~~l~ 73 (143)
T 3oop_A 13 FDVNTTAKKMHLFLMRSIASYDVTPEQWSVLEGIE-------AN--EPISQKEIALWTKKDTPTVNRIVD 73 (143)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSSSCHHHHHHHHHHH-------HH--SSEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHH-------Hc--CCcCHHHHHHHHCCCHhhHHHHHH
Confidence 44444555555555544433334333333232221 11 345889999999999998888764
No 462
>2ra5_A Putative transcriptional regulator; beta structure, UTRA domain, structural genomics, PSI-2, protein structure initiative; HET: SRT; 2.40A {Streptomyces coelicolor A3} SCOP: d.190.1.2
Probab=33.04 E-value=9.1 Score=37.63 Aligned_cols=27 Identities=26% Similarity=0.447 Sum_probs=0.0
Q ss_pred CC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 561 MK-TLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 561 ~~-Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
.+ |..|+|+.||||+.||| +|++.|..
T Consensus 39 ~lPse~~La~~~~vSr~tvr----~Al~~L~~ 66 (247)
T 2ra5_A 39 LLGNEIELAARLGLSRPTVR----QAIQSLVD 66 (247)
T ss_dssp --------------------------------
T ss_pred CCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 35 89999999999999999 78888865
No 463
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=32.07 E-value=78 Score=24.78 Aligned_cols=40 Identities=20% Similarity=0.457 Sum_probs=28.4
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 546 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 546 ER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
|.+|+.+--.. |--.-++.+++.+||+++-|- .+|++|.+
T Consensus 12 e~~lL~yIr~s--GGildI~~~a~kygV~kdeV~----~~LrrLe~ 51 (59)
T 2xvc_A 12 ERELLDYIVNN--GGFLDIEHFSKVYGVEKQEVV----KLLEALKN 51 (59)
T ss_dssp HHHHHHHHHHT--TSEEEHHHHHHHHCCCHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHHc--CCEEeHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 34555544333 334899999999999999998 66676654
No 464
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=31.91 E-value=1.3e+02 Score=26.14 Aligned_cols=24 Identities=13% Similarity=0.188 Sum_probs=20.5
Q ss_pred CCCCHHHHHHhcCCCHHHHHHHHh
Q 007404 467 RHPNNEEVAEATGLSMKRLHAVLL 490 (605)
Q Consensus 467 r~PT~eEIAe~lgis~e~V~~~l~ 490 (605)
...+..+||+.+|++...|..++.
T Consensus 62 ~~~t~~ela~~l~is~~tvs~~l~ 85 (162)
T 2fa5_A 62 PGSSASEVSDRTAMDKVAVSRAVA 85 (162)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHH
Confidence 357899999999999998888764
No 465
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=31.74 E-value=51 Score=29.92 Aligned_cols=50 Identities=20% Similarity=0.232 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 542 LNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 542 L~~rER~VL~LRyGl~dg-~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
+++.+..+|...|..+.. ......+||..+|++...|+.+..+-..|.|+
T Consensus 100 ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 100 FTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 566777777777765422 11346789999999999999999888887764
No 466
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=31.68 E-value=22 Score=32.56 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=23.2
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHH
Q 007404 561 MKTLQEIGELMGVSRERIRQIESSAF 586 (605)
Q Consensus 561 ~~Tl~EIAe~LGISrerVRqie~RAL 586 (605)
.+|..|+|+.+|||..|+|.++...+
T Consensus 11 ~~~i~e~A~~~gvs~~TLR~ye~~Gl 36 (154)
T 2zhg_A 11 LLTPGEVAKRSGVAVSALHFYESKGL 36 (154)
T ss_dssp CBCHHHHHHHHTSCHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHcCC
Confidence 38999999999999999999987654
No 467
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=31.32 E-value=78 Score=30.75 Aligned_cols=34 Identities=24% Similarity=0.210 Sum_probs=25.2
Q ss_pred hHHHHHHhhcCCCCchHHHHHhhcCCHHHHHHHH
Q 007404 327 GLREVLSERCGGSPTFAQWAAAAGVDQRELRRRL 360 (605)
Q Consensus 327 ~~~~~L~~~~G~~pt~~ewA~a~g~d~~~L~~~l 360 (605)
++..-+......++++.++|..+|++...|.+..
T Consensus 7 ~~~~~i~~~~~~~~~~~~la~~~~~s~~~l~r~f 40 (292)
T 1d5y_A 7 DLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMF 40 (292)
T ss_dssp HHHHHHHTTSSSSCCCHHHHTTTSSCHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHCcCHHHHHHHH
Confidence 3444455666778899999999999987776653
No 468
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=31.30 E-value=55 Score=34.37 Aligned_cols=37 Identities=8% Similarity=-0.008 Sum_probs=27.6
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 007404 546 ERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSA 585 (605)
Q Consensus 546 ER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RA 585 (605)
.+.||.+-+-.+ +.|..|||+.+|+|+.||.++..+-
T Consensus 41 ~~~il~~l~~~~---~~sr~ela~~~gls~~tv~~~v~~L 77 (429)
T 1z05_A 41 AGRVYKLIDQKG---PISRIDLSKESELAPASITKITREL 77 (429)
T ss_dssp HHHHHHHHHHHC---SBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 345666655432 4999999999999999999766543
No 469
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=31.21 E-value=42 Score=26.73 Aligned_cols=50 Identities=6% Similarity=0.063 Sum_probs=36.2
Q ss_pred CCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 542 LNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 542 L~~rER~VL~LRyGl~dg-~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
+++.+..+|.-.|..+.. ......+||..+|+|...|+....+-..|.|+
T Consensus 11 ~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr 61 (69)
T 2l9r_A 11 MSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKR 61 (69)
T ss_dssp CCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCC
T ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhh
Confidence 566677777777755422 11345789999999999999998877776654
No 470
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=31.20 E-value=1.7e+02 Score=25.79 Aligned_cols=26 Identities=19% Similarity=0.152 Sum_probs=21.2
Q ss_pred cCCCCCHHHHHHhcCCCHHHHHHHHh
Q 007404 465 NGRHPNNEEVAEATGLSMKRLHAVLL 490 (605)
Q Consensus 465 lgr~PT~eEIAe~lgis~e~V~~~l~ 490 (605)
.+...+..+||+.+|++...+..++.
T Consensus 43 ~~~~~~~~eLa~~l~~~~~tvs~~v~ 68 (151)
T 4aik_A 43 LPPEQSQIQLAKAIGIEQPSLVRTLD 68 (151)
T ss_dssp SCTTSCHHHHHHHHTSCHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHCcCHHHHHHHHH
Confidence 35556778999999999999888764
No 471
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=30.82 E-value=47 Score=33.24 Aligned_cols=36 Identities=19% Similarity=0.173 Sum_probs=28.1
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHC-------CCHHHHHHHHHHH
Q 007404 546 ERQVVRWRFGLEDGRMKTLQEIGELMG-------VSRERIRQIESSA 585 (605)
Q Consensus 546 ER~VL~LRyGl~dg~~~Tl~EIAe~LG-------ISrerVRqie~RA 585 (605)
.|.+|.+.|-.| +|..+|++.|+ +|+.||..+..+-
T Consensus 11 ~R~~i~~~~~~G----~s~~~~~~~l~~~~g~~~vs~~tv~~w~~r~ 53 (345)
T 3hot_A 11 TRTVLIFCFHLK----KTAAESHRMLVEAFGEQVPTVKTCERWFQRF 53 (345)
T ss_dssp HHHHHHHHHHTT----CCHHHHHHHHHHHTCSCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC----CCHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Confidence 455666666655 89999999987 9999999887763
No 472
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=30.73 E-value=1.1e+02 Score=25.93 Aligned_cols=23 Identities=4% Similarity=0.057 Sum_probs=20.3
Q ss_pred CCCHHHHHHhcCCCHHHHHHHHh
Q 007404 468 HPNNEEVAEATGLSMKRLHAVLL 490 (605)
Q Consensus 468 ~PT~eEIAe~lgis~e~V~~~l~ 490 (605)
..+..+||+.+|++...|..++.
T Consensus 50 ~~~~~ela~~l~~~~~tvs~~l~ 72 (141)
T 3bro_A 50 EVLQRDLESEFSIKSSTATVLLQ 72 (141)
T ss_dssp CCBHHHHHHHHTCCHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCcchHHHHHH
Confidence 56999999999999998888764
No 473
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=30.73 E-value=1e+02 Score=27.00 Aligned_cols=47 Identities=4% Similarity=0.114 Sum_probs=35.6
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHhH
Q 007404 541 TLNPRERQVVRWRFGLEDGRMKTLQEIGELM-----GVSRERIRQIESSAFRKLKNK 592 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~L-----GISrerVRqie~RALkKLR~~ 592 (605)
++++.-+.||.+-... ++.+.|..||.+.+ +||..||. |.|+.|.+.
T Consensus 15 r~T~qR~~Il~~L~~~-~~~~~sa~ei~~~l~~~~~~is~aTVY----R~L~~L~e~ 66 (136)
T 1mzb_A 15 KVTLPRVKILQMLDSA-EQRHMSAEDVYKALMEAGEDVGLATVY----RVLTQFEAA 66 (136)
T ss_dssp CCCHHHHHHHHHHHCC--CCSBCHHHHHHHHHHTTCCCCHHHHH----HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhC-CCCCCCHHHHHHHHHhhCCCCCHHHHH----HHHHHHHHC
Confidence 5787777777765432 22579999999999 89999998 778777663
No 474
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=30.61 E-value=81 Score=21.33 Aligned_cols=23 Identities=13% Similarity=0.062 Sum_probs=20.5
Q ss_pred CCHHHHHHhcCCCHHHHHHHHhC
Q 007404 469 PNNEEVAEATGLSMKRLHAVLLS 491 (605)
Q Consensus 469 PT~eEIAe~lgis~e~V~~~l~~ 491 (605)
-+..+||+.+|++...|..++..
T Consensus 22 ~s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 22 VSLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCHHHHHHHHCcCHHHHHHHHhh
Confidence 47899999999999999998864
No 475
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=30.60 E-value=71 Score=26.75 Aligned_cols=53 Identities=11% Similarity=0.051 Sum_probs=39.4
Q ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHH
Q 007404 541 TLNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 593 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg-~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l 593 (605)
..+..|..+|.-.|..+-. ......+||..+|++...|+.....-..|.|+.-
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~ 70 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKE 70 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCC
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHH
Confidence 4566666777777765422 1246678999999999999999999888877643
No 476
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=30.54 E-value=78 Score=26.28 Aligned_cols=53 Identities=11% Similarity=0.083 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHC---------------CCHHHHHHHHHHHHHHHHhHHh
Q 007404 542 LNPRERQVVRWRFGLEDG-RMKTLQEIGELMG---------------VSRERIRQIESSAFRKLKNKKR 594 (605)
Q Consensus 542 L~~rER~VL~LRyGl~dg-~~~Tl~EIAe~LG---------------ISrerVRqie~RALkKLR~~l~ 594 (605)
+++.+..+|.-.|..+.. .....++||+.+| |+...|..+...-..|.|+...
T Consensus 14 ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~ 82 (95)
T 2cuf_A 14 WRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRAN 82 (95)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 566777788877766422 1134678999999 9999999999998888887654
No 477
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=30.09 E-value=42 Score=30.04 Aligned_cols=39 Identities=8% Similarity=0.084 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCC-CHHHHHHHHHH
Q 007404 542 LNPRERQVVRWRFGLEDGRMKTLQEIGELMGV-SRERIRQIESS 584 (605)
Q Consensus 542 L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGI-SrerVRqie~R 584 (605)
+++.-.+-|..+...| +|+.+|+...|| |+.||..++.+
T Consensus 13 ~t~e~~e~I~~~i~~G----~sl~~i~~~~~~ps~~T~~~W~~~ 52 (140)
T 4dyq_A 13 YMPEVADDICSLLSSG----ESLLKVCKRPGMPDKSTVFRWLAK 52 (140)
T ss_dssp CCTTHHHHHHHHHHTT----CCHHHHHTSTTCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCC----CcHHHHHhcCCCCCHHHHHHHHHc
Confidence 3333333444555555 999999999999 99999998876
No 478
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=29.98 E-value=57 Score=32.48 Aligned_cols=41 Identities=7% Similarity=0.106 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 007404 542 LNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES 583 (605)
Q Consensus 542 L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~ 583 (605)
|...++.++..-... ++.+.+..++|+.+|+++.++...+.
T Consensus 261 l~~~e~~~l~~l~~~-~~~~~~~~~~a~~lg~~~~tl~~~l~ 301 (338)
T 3pfi_A 261 FDAMDLRYLELLTAA-KQKPIGLASIAAALSEDENTIEDVIE 301 (338)
T ss_dssp CCHHHHHHHHHHHHS-CSCCBCHHHHHHHTTCCHHHHHHTTH
T ss_pred CCHHHHHHHHHHHHh-cCCCchHHHHHHHhCCCHHHHHHHHh
Confidence 444555666554444 55568999999999999999985544
No 479
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=29.92 E-value=21 Score=32.50 Aligned_cols=25 Identities=12% Similarity=0.315 Sum_probs=22.7
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHH
Q 007404 562 KTLQEIGELMGVSRERIRQIESSAF 586 (605)
Q Consensus 562 ~Tl~EIAe~LGISrerVRqie~RAL 586 (605)
+|..|+|+.+|||..++|-++...+
T Consensus 17 ~~I~evA~~~gvs~~tLR~Ye~~Gl 41 (148)
T 3gpv_A 17 YTIGQVAKMQHLTISQIRYYDKQGL 41 (148)
T ss_dssp BCHHHHHHHTTCCHHHHHHHHHTTC
T ss_pred eeHHHHHHHHCcCHHHHHHHHHCCC
Confidence 7899999999999999999887654
No 480
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.54 E-value=77 Score=24.60 Aligned_cols=43 Identities=7% Similarity=0.134 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHH
Q 007404 544 PRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAF 586 (605)
Q Consensus 544 ~rER~VL~LRyGl~dg-~~~Tl~EIAe~LGISrerVRqie~RAL 586 (605)
+.+..+|...|..+.. ......+||..+|++...|+.+..+-.
T Consensus 12 ~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRR 55 (64)
T 2e19_A 12 KNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQ 55 (64)
T ss_dssp HHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhccc
Confidence 4566777777755421 113567899999999999998875543
No 481
>3q9v_A DNA-binding response regulator; response regulator protein, DNA binding protein; 1.60A {Deinococcus radiodurans}
Probab=29.51 E-value=63 Score=28.60 Aligned_cols=50 Identities=22% Similarity=0.287 Sum_probs=37.6
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH-C----CCHHHHHHHHHHHHHHHHh
Q 007404 541 TLNPRERQVVRWRFGLEDGRMKTLQEIGELM-G----VSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~L-G----ISrerVRqie~RALkKLR~ 591 (605)
.|+++|..+|.+- ....|+..|.++|.+.+ | .+..+|.+.+.+-.+||..
T Consensus 60 ~Lt~~E~~LL~~L-~~~~g~vvsre~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~~ 114 (133)
T 3q9v_A 60 RLSPKEFDILALL-IRQPGRVYSRQEIGQEIWQGRLPEGSNVVDVHMANLRAKLRD 114 (133)
T ss_dssp CCCHHHHHHHHHH-TTSTTCEEEHHHHHHHHHTTCCCTTCCHHHHHHHHHHHHHHH
T ss_pred EcCHHHHHHHHHH-HHCCCceEcHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhc
Confidence 5899999999764 45677889999999876 2 4566788777666666654
No 482
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.04 E-value=74 Score=25.87 Aligned_cols=42 Identities=12% Similarity=0.165 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHH
Q 007404 545 RERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAF 586 (605)
Q Consensus 545 rER~VL~LRyGl~dg-~~~Tl~EIAe~LGISrerVRqie~RAL 586 (605)
.++.+|.-+|-.+-. ...-+..||+.+|++++.|+.+..+-.
T Consensus 15 ~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrR 57 (71)
T 2da7_A 15 DHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRK 57 (71)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcc
Confidence 457788888877632 124578899999999999998887643
No 483
>2ou3_A Tellurite resistance protein of COG3793; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE I3A; 1.85A {Nostoc punctiforme} SCOP: a.287.1.1
Probab=28.97 E-value=3.2e+02 Score=24.54 Aligned_cols=40 Identities=18% Similarity=0.439 Sum_probs=32.3
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhHH
Q 007404 540 DTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 593 (605)
Q Consensus 540 ~~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l 593 (605)
..+++.|+.+|. +||+.||+|...+.+++.++....+-..
T Consensus 109 G~~~~~E~~~L~--------------~iA~~Lgls~~~~~~l~~~~~~~~~~~~ 148 (161)
T 2ou3_A 109 GELHEKEKAKIR--------------KMATILGIKEEIVDQLEQLYYYEAALRQ 148 (161)
T ss_dssp SSCCHHHHHHHH--------------HHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHH--------------HHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 358999988864 8999999999999999888777655433
No 484
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=28.84 E-value=62 Score=29.71 Aligned_cols=51 Identities=20% Similarity=0.183 Sum_probs=40.2
Q ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 007404 541 TLNPRERQVVRWRFGLEDG-RMKTLQEIGELMGVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 541 ~L~~rER~VL~LRyGl~dg-~~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 591 (605)
.+++.+..+|...|..+.. ......+||..+|++...|+.+..+-..|.|+
T Consensus 107 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr 158 (160)
T 1e3o_C 107 SIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKR 158 (160)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTS
T ss_pred ccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhc
Confidence 4788888999988876532 11356789999999999999999888877764
No 485
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=28.28 E-value=1e+02 Score=27.04 Aligned_cols=23 Identities=4% Similarity=-0.093 Sum_probs=20.0
Q ss_pred CCCHHHHHHhcCCCHHHHHHHHh
Q 007404 468 HPNNEEVAEATGLSMKRLHAVLL 490 (605)
Q Consensus 468 ~PT~eEIAe~lgis~e~V~~~l~ 490 (605)
..+..+||+.+|++...+..++.
T Consensus 67 ~~t~~eLa~~l~~~~~~vs~~l~ 89 (161)
T 3e6m_A 67 ELTVGQLATLGVMEQSTTSRTVD 89 (161)
T ss_dssp EEEHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHH
Confidence 56899999999999998888764
No 486
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=27.94 E-value=49 Score=29.13 Aligned_cols=29 Identities=21% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHH
Q 007404 550 VRWRFGLEDGRMKTLQEIGELMGVSRERIRQI 581 (605)
Q Consensus 550 L~LRyGl~dg~~~Tl~EIAe~LGISrerVRqi 581 (605)
+....|.++ .|+++||+..|||+.++..+
T Consensus 14 l~~~~G~~~---~ti~~Ia~~agvs~~t~Y~~ 42 (194)
T 3bqz_B 14 LFIKNGYNA---TTTGEIVKLSESSKGNLYYH 42 (194)
T ss_dssp HHHHHTTTT---CCHHHHHHHTTCCHHHHHHH
T ss_pred HHHHcCCcc---CCHHHHHHHhCCCchhHHHh
No 487
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=27.63 E-value=1.1e+02 Score=26.40 Aligned_cols=25 Identities=12% Similarity=0.202 Sum_probs=20.3
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 007404 560 RMKTLQEIGELMGVSRERIRQIESS 584 (605)
Q Consensus 560 ~~~Tl~EIAe~LGISrerVRqie~R 584 (605)
...|+.+||..+|+|..+.....++
T Consensus 92 ~~~sl~~lA~~~g~S~~~f~r~Fk~ 116 (133)
T 1u8b_A 92 TPVTLEALADQVAMSPFHLHRLFKA 116 (133)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3499999999999998888855443
No 488
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=27.52 E-value=48 Score=29.45 Aligned_cols=26 Identities=15% Similarity=0.276 Sum_probs=21.4
Q ss_pred HHhcCCCCCCCHHHHHHHHCCCHHHHHHH
Q 007404 553 RFGLEDGRMKTLQEIGELMGVSRERIRQI 581 (605)
Q Consensus 553 RyGl~dg~~~Tl~EIAe~LGISrerVRqi 581 (605)
..|.+ ..|+.+||+..|||+.++..+
T Consensus 22 ~~G~~---~~t~~~IA~~agvs~~tlY~~ 47 (192)
T 2zcm_A 22 EKGYD---GTTLDDISKSVNIKKASLYYH 47 (192)
T ss_dssp HHCTT---TCCHHHHHHHTTCCHHHHHHH
T ss_pred HcCcc---cCCHHHHHHHhCCChHHHHHH
Confidence 44554 399999999999999999864
No 489
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=27.24 E-value=71 Score=26.00 Aligned_cols=23 Identities=9% Similarity=0.180 Sum_probs=20.0
Q ss_pred CCCHHHHHHhcCCCHHHHHHHHh
Q 007404 468 HPNNEEVAEATGLSMKRLHAVLL 490 (605)
Q Consensus 468 ~PT~eEIAe~lgis~e~V~~~l~ 490 (605)
.-+..|||+.+++|+..|+..+.
T Consensus 16 ~vsv~eLa~~l~VS~~TIRrdL~ 38 (78)
T 1xn7_A 16 RMEAAQISQTLNTPQPMINAMLQ 38 (78)
T ss_dssp SBCHHHHHHHTTCCHHHHHHHHH
T ss_pred CCcHHHHHHHHCcCHHHHHHHHH
Confidence 35789999999999999998874
No 490
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=27.19 E-value=1.1e+02 Score=25.98 Aligned_cols=78 Identities=13% Similarity=0.111 Sum_probs=42.2
Q ss_pred CCCHHHHHHhcCCCHHHHHHHHhCCCCCCCccccc--cccCCCCCCcccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHH
Q 007404 468 HPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKI--GINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPR 545 (605)
Q Consensus 468 ~PT~eEIAe~lgis~e~V~~~l~~~~~~~SLD~~i--~~d~~~~l~d~l~D~~~~spEe~l~~~el~~~L~~aL~~L~~r 545 (605)
.-|..++|+.+|++...|..+..-... .+++... ..--+.++.+++......... .....+...+..|++.
T Consensus 25 glsq~~lA~~~gis~~~is~~E~g~~~-p~~~~l~~ia~~l~v~~~~l~~~~~~~~~~------~~~~~l~~~~~~l~~~ 97 (126)
T 3ivp_A 25 GLTREQVGAMIEIDPRYLTNIENKGQH-PSLQVLYDLVSLLNVSVDEFFLPASSQVKS------TKRRQLENKIDNFTDA 97 (126)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHSCCC-CCHHHHHHHHHHHTCCSHHHHSCCCCCCCC------HHHHHHHHHTTTCCHH
T ss_pred CCCHHHHHHHhCcCHHHHHHHHCCCCC-CCHHHHHHHHHHHCcCHHHHhCCCccccch------HHHHHHHHHHHcCCHH
Confidence 457889999999999999988764432 3333211 000112222222211111000 1223466677889998
Q ss_pred HHHHHHH
Q 007404 546 ERQVVRW 552 (605)
Q Consensus 546 ER~VL~L 552 (605)
++.++.-
T Consensus 98 ~~~~i~~ 104 (126)
T 3ivp_A 98 DLVIMES 104 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887753
No 491
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=27.17 E-value=54 Score=29.26 Aligned_cols=44 Identities=11% Similarity=0.272 Sum_probs=29.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH-CCCHHHHHHH
Q 007404 535 LEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELM-GVSRERIRQI 581 (605)
Q Consensus 535 L~~aL~~L~~rER~VL~LRyGl~dg~~~Tl~EIAe~L-GISrerVRqi 581 (605)
+..+|+.|..+=+..| ++...+| ++++.||++.+ |||..++.+.
T Consensus 16 i~~~l~~lg~kW~l~I-L~~L~~g--~~rf~eL~~~l~gIs~~~Ls~~ 60 (131)
T 4a5n_A 16 VEFTLDVIGGKWKGIL-FYHMIDG--KKRFNEFRRICPSITQRMLTLQ 60 (131)
T ss_dssp HHHHHHHHCSSSHHHH-HHHHTTS--CBCHHHHHHHCTTSCHHHHHHH
T ss_pred HHHHHHHHcCcCHHHH-HHHHhcC--CcCHHHHHHHhcccCHHHHHHH
Confidence 4556666766644433 2222222 49999999999 9999999843
No 492
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=27.10 E-value=86 Score=24.17 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=20.8
Q ss_pred CCCCHHHHHHhcCCCHHHHHHHHh
Q 007404 467 RHPNNEEVAEATGLSMKRLHAVLL 490 (605)
Q Consensus 467 r~PT~eEIAe~lgis~e~V~~~l~ 490 (605)
..-|..|||+.+|+|...|...+.
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ 52 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIEN 52 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHH
Confidence 577999999999999999987653
No 493
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=26.97 E-value=56 Score=29.03 Aligned_cols=22 Identities=14% Similarity=0.357 Sum_probs=19.4
Q ss_pred CCCHHHHHHHHCCCHHHHHHHH
Q 007404 561 MKTLQEIGELMGVSRERIRQIE 582 (605)
Q Consensus 561 ~~Tl~EIAe~LGISrerVRqie 582 (605)
..|+++||+..|||+.++..+.
T Consensus 23 ~~s~~~IA~~agvsk~t~Y~~F 44 (190)
T 3vpr_A 23 ATSVQDLAQALGLSKAALYHHF 44 (190)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHc
Confidence 3899999999999999997653
No 494
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=26.95 E-value=4.2e+02 Score=27.94 Aligned_cols=32 Identities=28% Similarity=0.453 Sum_probs=24.3
Q ss_pred HHhHHHHHHhhcCCCCchHHHHHhhc--CCHHHH
Q 007404 325 LEGLREVLSERCGGSPTFAQWAAAAG--VDQREL 356 (605)
Q Consensus 325 le~~~~~L~~~~G~~pt~~ewA~a~g--~d~~~L 356 (605)
+.+.+.+|....|+.|+..+.|...| ++.+.+
T Consensus 271 lrr~~~~l~~~~~r~p~~~eiA~~l~~~~~~~~v 304 (423)
T 2a6h_F 271 LSRTARQLQQELGREPTYEEIAEAMGPGWDAKRV 304 (423)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHHCTTCCHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHhCCCCCHHHH
Confidence 44455667677899999999999888 876554
No 495
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=26.91 E-value=53 Score=32.22 Aligned_cols=35 Identities=23% Similarity=0.258 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHhcCCCHHHHHHHHh
Q 007404 454 VKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLL 490 (605)
Q Consensus 454 i~ka~~~L~~elgr~PT~eEIAe~lgis~e~V~~~l~ 490 (605)
+....+.|. .||.|+.++||..+|++.++|..+|.
T Consensus 24 ~~~llr~la--~Grpv~~~~LA~~~g~~~~~v~~~L~ 58 (220)
T 3f2g_A 24 LVPLLRELA--KGRPVSRTTLAGILDWPAERVAAVLE 58 (220)
T ss_dssp HHHHHHHHT--TTSCBCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHh--cCCCCCHHHHHHHhCcCHHHHHHHHH
No 496
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=26.88 E-value=67 Score=28.10 Aligned_cols=44 Identities=5% Similarity=0.104 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHh
Q 007404 542 LNPRERQVVRWRFGLEDGRMKTLQEIGELM-----GVSRERIRQIESSAFRKLKN 591 (605)
Q Consensus 542 L~~rER~VL~LRyGl~dg~~~Tl~EIAe~L-----GISrerVRqie~RALkKLR~ 591 (605)
+++.-+.||.+... .+.+.|.+||.+.+ +||..||. |.|+.|-+
T Consensus 9 ~T~qR~~Il~~l~~--~~~~~sa~ei~~~l~~~~~~is~~TVY----R~L~~L~e 57 (131)
T 2o03_A 9 STRQRAAISTLLET--LDDFRSAQELHDELRRRGENIGLTTVY----RTLQSMAS 57 (131)
T ss_dssp HHHHHHHHHHHHHH--CCSCEEHHHHHHHHHHTTCCCCHHHHH----HHHHHHHT
T ss_pred CCHHHHHHHHHHHh--CCCCCCHHHHHHHHHHhCCCCCHhhHH----HHHHHHHH
Confidence 34444456555433 34579999999999 99999998 77776654
No 497
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=26.69 E-value=51 Score=31.53 Aligned_cols=23 Identities=17% Similarity=0.395 Sum_probs=19.9
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHH
Q 007404 560 RMKTLQEIGELMGVSRERIRQIE 582 (605)
Q Consensus 560 ~~~Tl~EIAe~LGISrerVRqie 582 (605)
.+.|+.++|+.||+|+.+|.+++
T Consensus 26 ~~~s~s~aA~~L~isq~avSr~I 48 (230)
T 3cta_A 26 AYLTSSKLADMLGISQQSASRII 48 (230)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHH
Confidence 45889999999999999999544
No 498
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=26.55 E-value=50 Score=27.50 Aligned_cols=23 Identities=9% Similarity=-0.019 Sum_probs=19.8
Q ss_pred CCHHHHHHhcCCCHHHHHHHHhC
Q 007404 469 PNNEEVAEATGLSMKRLHAVLLS 491 (605)
Q Consensus 469 PT~eEIAe~lgis~e~V~~~l~~ 491 (605)
-+..+||+.+|++...|..++..
T Consensus 34 ~s~~~ia~~lgis~~Tv~~w~~~ 56 (128)
T 1pdn_C 34 IRPCVISRQLRVSHGCVSKILNR 56 (128)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHH
Confidence 47889999999999999888753
No 499
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=26.53 E-value=57 Score=29.18 Aligned_cols=21 Identities=29% Similarity=0.222 Sum_probs=19.1
Q ss_pred CCCHHHHHHHHCCCHHHHHHH
Q 007404 561 MKTLQEIGELMGVSRERIRQI 581 (605)
Q Consensus 561 ~~Tl~EIAe~LGISrerVRqi 581 (605)
..|+.+||+..|||+.++..+
T Consensus 34 ~~ti~~IA~~agvs~~t~Y~~ 54 (212)
T 3knw_A 34 GVGLQEILKTSGVPKGSFYHY 54 (212)
T ss_dssp TCCHHHHHHHHTCCHHHHHHH
T ss_pred cCCHHHHHHHhCCChHHHHHH
Confidence 399999999999999999864
No 500
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=26.46 E-value=57 Score=29.16 Aligned_cols=27 Identities=26% Similarity=0.264 Sum_probs=22.2
Q ss_pred HHhcCCCCCCCHHHHHHHHCCCHHHHHHHH
Q 007404 553 RFGLEDGRMKTLQEIGELMGVSRERIRQIE 582 (605)
Q Consensus 553 RyGl~dg~~~Tl~EIAe~LGISrerVRqie 582 (605)
..|.+ ..|+++||+..|||+.++..+.
T Consensus 27 e~G~~---~~t~~~IA~~agvsk~tlY~~F 53 (192)
T 2fq4_A 27 ESGFK---AVTVDKIAERAKVSKATIYKWW 53 (192)
T ss_dssp HHCTT---TCCHHHHHHHHTCCHHHHHHHC
T ss_pred HcCcc---cccHHHHHHHcCCCHHHHHHHC
Confidence 34544 3899999999999999998764
Done!