Query 007405
Match_columns 605
No_of_seqs 379 out of 2475
Neff 8.8
Searched_HMMs 29240
Date Tue Mar 26 00:59:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007405.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007405hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xut_A Proton/peptide symporte 100.0 7.5E-30 2.6E-34 280.2 23.7 459 67-587 10-512 (524)
2 4aps_A DI-OR tripeptide H+ sym 100.0 2.3E-28 7.9E-33 266.0 33.2 433 64-584 8-478 (491)
3 4gc0_A D-xylose-proton symport 99.9 2.3E-26 7.8E-31 250.0 20.0 417 92-595 34-480 (491)
4 1pw4_A Glycerol-3-phosphate tr 99.9 2.2E-25 7.7E-30 239.0 21.8 386 67-579 26-435 (451)
5 3o7q_A L-fucose-proton symport 99.9 3.1E-23 1.1E-27 221.6 31.2 179 65-276 22-226 (438)
6 2gfp_A EMRD, multidrug resista 99.9 3.6E-22 1.2E-26 209.2 14.7 167 72-274 3-169 (375)
7 2cfq_A Lactose permease; trans 99.8 5.1E-21 1.7E-25 204.0 7.9 169 70-269 8-177 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.5 1.9E-13 6.5E-18 145.9 15.2 178 69-279 252-433 (451)
9 3o7q_A L-fucose-proton symport 99.4 2.8E-11 9.6E-16 128.6 20.4 165 70-272 259-425 (438)
10 2cfq_A Lactose permease; trans 99.3 9.9E-12 3.4E-16 132.0 14.9 173 71-278 222-398 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.1 1.1E-10 3.6E-15 126.3 10.8 185 71-282 285-474 (491)
12 4gc0_A D-xylose-proton symport 99.1 1.3E-08 4.3E-13 109.8 23.1 181 74-285 281-468 (491)
13 2gfp_A EMRD, multidrug resista 98.9 1.3E-09 4.3E-14 113.4 5.4 164 69-266 199-363 (375)
14 2xut_A Proton/peptide symporte 98.2 8.9E-07 3.1E-11 96.2 5.9 90 186-281 404-504 (524)
No 1
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.97 E-value=7.5e-30 Score=280.18 Aligned_cols=459 Identities=21% Similarity=0.325 Sum_probs=277.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHH
Q 007405 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMH------KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA 140 (605)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~------~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~ 140 (605)
+++.++.+.+..++..+++|++..+++.|+++++| ++..+.+++.+.+.++..++.+++|+++||++|||+++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~ 89 (524)
T 2xut_A 10 WPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTIL 89 (524)
T ss_dssp ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 34456778888999999999999999999999999 999999999999999999999999999999449999999
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccch-hHHHHHHHHHHHHHhhcccchhhhhhhhccCCCC
Q 007405 141 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSW-QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER 219 (605)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~ 219 (605)
++.++..++.+++.++ . +.+.++++|++.|++.+...++..++++|++|++
T Consensus 90 ~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~ 141 (524)
T 2xut_A 90 WLSLIYCVGHAFLAIF----------------------------EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQS 141 (524)
T ss_dssp HHHHHHHHHHHHHHHT----------------------------SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHh----------------------------cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCcc
Confidence 9999999998888876 3 6778899999999999999999999999999998
Q ss_pred CchhhhhhhH---HHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHH
Q 007405 220 SKDYKTHLDR---FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296 (605)
Q Consensus 220 ~~~~~~~r~~---~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (605)
+ |++ .+++++.+.++|..++|.+++++.+..||++.|++.+++.+++.++++...++.+..++++++..+.
T Consensus 142 ~------r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (524)
T 2xut_A 142 N------KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGF 215 (524)
T ss_dssp T------TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC---------
T ss_pred c------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhH
Confidence 8 654 4555888999999999999999999899999999988877666665544444333322322222222
Q ss_pred HHHHHHHHHhhccccCccccccccccCCCcccccCCcccccCCCcchhhHhhh---hhccccCCCCCC-------ccccc
Q 007405 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAAL---ELKEDVINPSPW-------KLCTV 366 (605)
Q Consensus 297 ~~v~~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~-------~~~~~ 366 (605)
.+.+..+.+++.... +.... +.... ........+.+.+....+..... ...+. ....+| +.+..
T Consensus 216 ~~~~~~~~~~~~~~~-~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 289 (524)
T 2xut_A 216 LPVIRSALLTKVEGK-GNIGL-VLALI---GGVSAAYALVNIPTLGIVAGLCCAMVLVMGF-VGAGASLQLERARKSHPD 289 (524)
T ss_dssp -----------CTTH-HHHHH-HHHHH---HHHHHHHTGGGTTTTCSSHHHHHHHHHHHHH-HHTGGGTHHHHSCCSCCS
T ss_pred HHHHHHHHhhhhccc-Cccch-hhhhh---hhhhhhhhhcccchhhhhhhhhhhhhhhhcc-cccchhhHHhhhhccccH
Confidence 222211111110000 00000 00000 00000000000000000000000 00000 000111 00111
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHhhhccCC---CCe-----------eeCC-C--------CCCCC
Q 007405 367 TQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM---GKL-----------KLPV-T--------CHPRG 423 (605)
Q Consensus 367 ~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-----------~ip~-~--------~~~~~ 423 (605)
.+.+++++.+....+++....++..+.+..+.+..+...++... .+. ..+. . ++.++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (524)
T 2xut_A 290 AAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVK 369 (524)
T ss_dssp SSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCSSSCHHHHHTTSGGGHHHHGGGTTTC-----------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCeeecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCC
Confidence 12234455555555555555666666666665655554444321 000 0000 1 11223
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccCCCCcchHHHHHHHHHHHHHHhHhhhhhhHHHHHhhcc
Q 007405 424 ASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP 503 (605)
Q Consensus 424 ~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P 503 (605)
.+...++.+|+++.+++++++...+..+ + .... .+.+++++.+++.++++++..+..++++.+.+|
T Consensus 370 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------~---~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p 435 (524)
T 2xut_A 370 LTALRKMGAGIAITGLSWIVVGTIQLMM----------D---GGSA-LSIFWQILPYALLTFGEVLVSATGLEFAYSQAP 435 (524)
T ss_dssp -CCHHHHHTHHHHHHHHHHTTTTTTTTT----------T---TTCC-CCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCC
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHh----------c---CCCC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 4455667778887777776655431100 0 0012 466778888999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHhhcccCCCCCCCCCCCCC-CCcCcchhHHHHHHHHHHHHHHHHHHHHHhhce
Q 007405 504 DAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ-NINTGRFDYLYWLLAVLSVINFCAFLYSAYRYK 582 (605)
Q Consensus 504 ~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~~~w~~~-~~~~~~~~~~f~~~a~l~~v~~~~~~~~~~~~~ 582 (605)
++.||+++|++++..++|+.+++.+.+.+.+.++ .+|... +.+. ..+.|++.+++++++.++++++.++++
T Consensus 436 ~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (524)
T 2xut_A 436 KAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV------TEQIVQTGMSV--TAFQMFFFAGFAILAAIVFALYARSYQ 507 (524)
T ss_dssp TTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH------HHHHHHHHSCH--HHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc------ccccccccccc--cccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999998765221 123211 1111 123377788888888888777777666
Q ss_pred ecccC
Q 007405 583 YRSEQ 587 (605)
Q Consensus 583 ~~~~~ 587 (605)
+++.+
T Consensus 508 ~~~~~ 512 (524)
T 2xut_A 508 MQDHY 512 (524)
T ss_dssp -----
T ss_pred cchhh
Confidence 55433
No 2
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.97 E-value=2.3e-28 Score=265.96 Aligned_cols=433 Identities=19% Similarity=0.221 Sum_probs=281.2
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCChhHHHHHHHHHHHHHHHhhhHHHHHhhh-ccchHH
Q 007405 64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYV-----MHKSFADSSNAVNNFLGISQASSVLGGFLADA-YLGRYW 137 (605)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~-~~GR~~ 137 (605)
.+++++.++.+++..++..+++|++.++++.|+++. +|++..+.+++.+.+.++..++.+++|+++|| + |||+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~ 86 (491)
T 4aps_A 8 FFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARP 86 (491)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHH
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchH
Confidence 345566788999999999999999999999999998 99999999999999999999999999999999 6 9999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCC
Q 007405 138 TIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD 217 (605)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~ 217 (605)
++.++.++..++.++++++ .+.+.++++|+++|++.+...++..++++|++|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~ 138 (491)
T 4aps_A 87 AVFWGGVLIMLGHIVLALP----------------------------FGASALFGSIILIIIGTGFLKPNVSTLVGTLYD 138 (491)
T ss_dssp HHHHHHHHHHHHHHHHHSC----------------------------CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHh----------------------------hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcC
Confidence 9999999999999888775 466788999999999999999999999999999
Q ss_pred CCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhccccccc---CCCC-Cch
Q 007405 218 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR---LPGG-SPL 293 (605)
Q Consensus 218 ~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~---~~~~-~~~ 293 (605)
+++.+ |+.++++++.+.++|..++|.+++++.+..||++.|++.++..++++++++...++.... ++.. ...
T Consensus 139 ~~~~~----r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (491)
T 4aps_A 139 EHDRR----RDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAP 214 (491)
T ss_dssp SCTTH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSH
T ss_pred ccccc----ceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCcccc
Confidence 87733 777888899999999999999999999999999999998877776666655443332211 1111 111
Q ss_pred hHHHHHHHH--------HHHhhccccCccccccccccCCCcccccCCcccccCCCcchhhHhhhhhccccCCCCCCcccc
Q 007405 294 TRVAQVLVA--------AFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCT 365 (605)
Q Consensus 294 ~~~~~v~~~--------~~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (605)
.+..+.... +..... +...+ .. ..++................. ...|+...
T Consensus 215 ~~~~~~~~~~g~~l~~~~~~~~~----------~~~~~-~~---------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 273 (491)
T 4aps_A 215 EEVKPLLVKVSLAVAGFIAIIVV----------MNLVG-WN---------SLPAYINLLTIVAIAIPVFYF-AWMISSVK 273 (491)
T ss_dssp HHHHHHHHHCCCCCHHHHHHHHH----------HHHHS-SC---------CTTHHHHHHHHHHHHHHHHHH-HHHC----
T ss_pred chhHHHHHHHHHHHHHHHHHHHH----------HHhcc-Cc---------ccccchhhhhHHHHHHHHHHH-HHHhhccc
Confidence 111110000 000000 00000 00 000000000000000000000 00000000
Q ss_pred chhhhhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHhh-hccC--CCCee--e---------CC-----CCCC-CCCC
Q 007405 366 VTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYT-MNTH--MGKLK--L---------PV-----TCHP-RGAS 425 (605)
Q Consensus 366 ~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~--i---------p~-----~~~~-~~~~ 425 (605)
....++++......+++....++..+.+..+.+..+... .+.. ..++. + +. +|.. ++..
T Consensus 274 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~ 352 (491)
T 4aps_A 274 -VTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPS 352 (491)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCC
Confidence 011234444455566666667777776666543333221 1111 11110 0 00 2332 2334
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccCCCCcchHHHHHHHHHHHHHHhHhhhhhhHHHHHhhcchh
Q 007405 426 QLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDA 505 (605)
Q Consensus 426 ~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~ 505 (605)
...++.+|+++.+++++++....... + ...+ .+.+++++.+++.++++++..+..++++.+.+|++
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~------~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~ 418 (491)
T 4aps_A 353 SPTKFAVGLMFAGLSFLLMAIPGALY-------G------TSGK-VSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKA 418 (491)
T ss_dssp CHHHHHHHHHHHHHHHTTTHHHHHHC-------C------CCTT-CCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhc-------C------CCCC-ccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHH
Confidence 55667788888888877776553210 0 0111 46777888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHHHhhceec
Q 007405 506 MKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYR 584 (605)
Q Consensus 506 ~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~~~~~~~~~~~~~ 584 (605)
.||.++|+.+....+|..+++.+.+.+.+. ++...|+++++++++..++.+++.++.+++
T Consensus 419 ~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 419 FNSQMMSMWFLSSSVGSALNAQLVTLYNAK-------------------SEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp CSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-------------------STTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998876541 123567777888888877777776655544
No 3
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.94 E-value=2.3e-26 Score=250.03 Aligned_cols=417 Identities=13% Similarity=0.071 Sum_probs=235.8
Q ss_pred HHHHHHHHhCC--------ChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccC
Q 007405 92 MVTFMFYVMHK--------SFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFM 163 (605)
Q Consensus 92 l~~yl~~~~~~--------s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (605)
...++.+.++. +..+.+++.+.+.++..++++++|+++||+ |||++++++.+++.++.++++++.......
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~ 112 (491)
T 4gc0_A 34 TVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSI 112 (491)
T ss_dssp THHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCS
T ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 44555555532 234567888899999999999999999997 999999999999999999998642110000
Q ss_pred CCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHH
Q 007405 164 PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAI 243 (605)
Q Consensus 164 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~ 243 (605)
.. ...-...-..+...++++|+++|+|.|+..+..+.+++|..|+++ |++..++.+.+..+|..
T Consensus 113 ~~----------~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~ 176 (491)
T 4gc0_A 113 NP----------DNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQL 176 (491)
T ss_dssp SS----------SSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHH
T ss_pred cc----------hhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhh
Confidence 00 000000001578899999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHhh--------hchHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHHhhccccCccc
Q 007405 244 VAFTLVVYIQME--------HGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSE 315 (605)
Q Consensus 244 i~p~i~~~l~~~--------~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~p~~~ 315 (605)
+++.++..+... .+|++.+.+..+..++.++... ..||+|
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~~peSp 224 (491)
T 4gc0_A 177 LVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLY--------------------------------TVPESP 224 (491)
T ss_dssp HHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGG--------------------------------GSCCCH
T ss_pred hhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhh--------------------------------cCCCCh
Confidence 998887766543 2466665554444333322211 257777
Q ss_pred cccccccCCCcccccCCcccccCCCcchhh--HhhhhhccccCCCCCCccccchhhhhhhhhhhhhhhhHHHHHHHHHHh
Q 007405 316 LIGLYEVPGKHSAIKGSGKIAHTDDFRCLD--KAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILT 393 (605)
Q Consensus 316 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 393 (605)
+| +..+++.+++.+..++...++...... ........+. .... ......++.........+.........
T Consensus 225 ~~-L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (491)
T 4gc0_A 225 RW-LMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRK--TGGR-----LLMFGVGVIVIGVMLSIFQQFVGINVV 296 (491)
T ss_dssp HH-HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTH-----HHHSCCTHHHHHHHHHHHHHHTCHHHH
T ss_pred HH-HHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhh--hhhH-----HHHhcccHHHHHHHHHHHHHHhhhhHH
Confidence 77 776666555544433332211100000 0000000000 0000 000000111111000000000000000
Q ss_pred hhhhHHHHHHhhhccCCC-------C-eeeCC----CCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcc
Q 007405 394 EFLTLSVQQAYTMNTHMG-------K-LKLPV----TCHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYE 461 (605)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~-------~-~~ip~----~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (605)
..+.....+....+.... + ..++. ....++.+++..+..+...++++++.++.....
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~----------- 365 (491)
T 4gc0_A 297 LYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT----------- 365 (491)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHT-----------
T ss_pred HhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhc-----------
Confidence 000001111110000000 0 00000 112223334445556666666666555543211
Q ss_pred ccccCCCCcchHHHHHHHHHHHHHHhHhhhhhhHHHHHhhcchhHHHHHHHHHHHHhhHHHHHHHHHHHHhhcccCCCCC
Q 007405 462 FSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKK 541 (605)
Q Consensus 462 ~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~ 541 (605)
.. .....++..+++.........|..+.+..|.+|.+.|++++|+.+..+++++++++.+.+.+.+..
T Consensus 366 ------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~----- 433 (491)
T 4gc0_A 366 ------QA-PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNS----- 433 (491)
T ss_dssp ------TC-CHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHH-----
T ss_pred ------cc-chHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 01 122222222222222223345667788999999999999999999999999999999988764411
Q ss_pred CCCCCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHHHhhceecccCCCCCchhh
Q 007405 542 GQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYEV 595 (605)
Q Consensus 542 ~~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (605)
|... ..+....|++++++++++.++.+++.+|+|+|+.||.++.+++
T Consensus 434 ----~~~~---~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~ 480 (491)
T 4gc0_A 434 ----WLVA---HFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEP 480 (491)
T ss_dssp ----HHHH---HHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC-
T ss_pred ----HHHh---hhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCC
Confidence 1000 0012346888899999999999999999999999887655544
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.93 E-value=2.2e-25 Score=239.02 Aligned_cols=386 Identities=13% Similarity=0.055 Sum_probs=242.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHH
Q 007405 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (605)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~ 146 (605)
+|+.++..++..++..+..+.+...++ ++.+++ .+..+.+++.+++.++..++.+++|+++||+ |||++++++.++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~ 102 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMP-YLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILA 102 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHH-HTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHH
Confidence 455566666666666666555555544 455667 9999999999999999999999999999997 9999999999999
Q ss_pred HHHHHHHHH----hhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCch
Q 007405 147 LAGLTGITL----CATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD 222 (605)
Q Consensus 147 ~~~~~~~~~----~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~ 222 (605)
.++.+++++ + .+.+.++++|++.|++.+...+...++++|.+|+++
T Consensus 103 ~~~~~~~~~~~~~~----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~-- 152 (451)
T 1pw4_A 103 AAVMLFMGFVPWAT----------------------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE-- 152 (451)
T ss_dssp HHHHHHHHHCHHHH----------------------------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH--
T ss_pred HHHHHHHHhhhhcc----------------------------ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh--
Confidence 999999887 4 466788999999999999999999999999999988
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-hHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHH
Q 007405 223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLV 301 (605)
Q Consensus 223 ~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~g-w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 301 (605)
|++.+++.+.+.++|..++|.+++++.+..| |++.|++.+++.++..++.++..++.+......+.
T Consensus 153 ----r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 219 (451)
T 1pw4_A 153 ----RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI--------- 219 (451)
T ss_dssp ----HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC---------
T ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh---------
Confidence 9999999999999999999999999888888 99999998887766655554444432211100000
Q ss_pred HHHHhhccccCccccccccccCCCcccccCCcccccCCCcchhhHhhhhhccccCCCCCCccccchhhhhhhhhhhhhhh
Q 007405 302 AAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPI 381 (605)
Q Consensus 302 ~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 381 (605)
. .+ +. ..+ . +... .... ...++.....+....+.++. +
T Consensus 220 ------------~-~~---~~--~~~-----------~-----~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~---~ 257 (451)
T 1pw4_A 220 ------------E-EY---KN--DYP-----------D-----DYNE-KAEQ----ELTAKQIFMQYVLPNKLLWY---I 257 (451)
T ss_dssp ------------T-TT---CC--C----------------------------------CCTHHHHHHTSSCHHHHH---H
T ss_pred ------------h-hh---cc--ccc-----------c-----cchh-hhhc----ccccccchHHHHHcCHHHHH---H
Confidence 0 00 00 000 0 0000 0000 00000000000000011111 1
Q ss_pred hHHHHHHHHHHhhhhhHHHHHH---hhhccCCCCee--------e----CCCCCCCCC--ChhHHHHHHHHHHH-HHHHH
Q 007405 382 PACTIMLNVILTEFLTLSVQQA---YTMNTHMGKLK--------L----PVTCHPRGA--SQLQRVGIGLAVSI-LSVIW 443 (605)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--------i----p~~~~~~~~--~~~~~i~~G~~~~~-~~~~~ 443 (605)
.+...+.+..+......+.... .+.+....++. + ...+..++. +.+..+.++.++.. ++++.
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (451)
T 1pw4_A 258 AIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIV 337 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 1111111111111111111111 01110000000 0 001112222 22333334433333 33332
Q ss_pred HHHHHHHHHHHhhhcCccccccCCCCcchHHHHHHHHHHHHHHhHhhhhhhHHHHHhhcchhHHHHHHHHHHHHhhH-HH
Q 007405 444 AGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGL-GC 522 (605)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~l-g~ 522 (605)
+... ++.+.+.+....++.|++.....+....++.+.+|++.||.++|+.+....+ |.
T Consensus 338 ~~~~---------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~ 396 (451)
T 1pw4_A 338 YWMN---------------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGS 396 (451)
T ss_dssp TTSC---------------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHh---------------------cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHH
Confidence 2211 1024556666777888888888888899999999999999999999999999 99
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 007405 523 FAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAY 579 (605)
Q Consensus 523 ~l~~~l~~~i~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~~~~~~~~ 579 (605)
.+++.+.+.+.+..+ +...|++.+++.+++.+++++..+
T Consensus 397 ~~~~~~~g~l~~~~g------------------~~~~~~~~~~~~~~~~~~~~~~~~ 435 (451)
T 1pw4_A 397 VAASAIVGYTVDFFG------------------WDGGFMVMIGGSILAVILLIVVMI 435 (451)
T ss_dssp HHHHHHHHHHHHSSC------------------SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC------------------cHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999998876333 356788888888887777666544
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.92 E-value=3.1e-23 Score=221.60 Aligned_cols=179 Identities=12% Similarity=-0.013 Sum_probs=149.0
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHH
Q 007405 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (605)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~ 144 (605)
+++++.++.+.+..++..+..+.+. .+.+++.+++|++..+.+++.+.+.++..++.++.|+++||+ |||++++++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~ 99 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLND-ILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLF 99 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHH
Confidence 4456666666666666666655444 445567889999999999999999999999999999999997 99999999999
Q ss_pred HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhh
Q 007405 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (605)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~ 224 (605)
+..++.+++...... .+.+.++++|++.|++.+...+...++++|.+|+++
T Consensus 100 ~~~~~~~~~~~~~~~-------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---- 150 (438)
T 3o7q_A 100 LYALGAALFWPAAEI-------------------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS---- 150 (438)
T ss_dssp HHHHHHHHHHHHHHT-------------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT----
T ss_pred HHHHHHHHHHhcccc-------------------------ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh----
Confidence 999999888332110 478899999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH-hhhc-------------------------hHHHHHHHHHHHHHHHHHH
Q 007405 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQ-MEHG-------------------------WGSAFGALAIAMGISNMLF 276 (605)
Q Consensus 225 ~~r~~~~~~~~~~~~ig~~i~p~i~~~l~-~~~g-------------------------w~~~f~~~~~~~~i~~~~~ 276 (605)
|++.+++++.+.++|..++|.+++++. +..+ |++.|++.++..++..+++
T Consensus 151 --r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 226 (438)
T 3o7q_A 151 --GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLI 226 (438)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988 5444 9999987766655544443
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.87 E-value=3.6e-22 Score=209.20 Aligned_cols=167 Identities=13% Similarity=0.115 Sum_probs=144.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 007405 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (605)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~ 151 (605)
+.+....++..+......+.++. +.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIAD-MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence 34455556666665555555544 5678999999999999999999999999999999997 999999999999999998
Q ss_pred HHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHH
Q 007405 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (605)
Q Consensus 152 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~ 231 (605)
.+.++ .+.+.++++|++.|++.+...+...+++.|.+|+++ |++.+
T Consensus 81 ~~~~~----------------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 126 (375)
T 2gfp_A 81 VAVTT----------------------------SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHAN 126 (375)
T ss_dssp HHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHH
T ss_pred HHHHh----------------------------ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHH
Confidence 88876 578889999999999999999999999999999998 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHH
Q 007405 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM 274 (605)
Q Consensus 232 ~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~ 274 (605)
++++....+|..++|.+++++.+..||++.|++.++..++..+
T Consensus 127 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 127 SLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988999999987776555443
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.82 E-value=5.1e-21 Score=204.03 Aligned_cols=169 Identities=11% Similarity=-0.121 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHH
Q 007405 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (605)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~ 149 (605)
..+......++..+++..+.++++.|+++++|++..+.+++.+.+.++..++.+++|+++||+ |||++++++.+++.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~~ 86 (417)
T 2cfq_A 8 NFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLVM 86 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTSC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHH
Confidence 355666666666667667788999999999999999999999999999999999999999997 9999999988876553
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhH-HHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhh
Q 007405 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQM-LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (605)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~-~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~ 228 (605)
...+...... ... ..++.++++.+++.+...+...+...+..++.. ..|+
T Consensus 87 ~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~~ 137 (417)
T 2cfq_A 87 FAPFFIFIFG-------------------------PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRSN 137 (417)
T ss_dssp HHHHHHHTHH-------------------------HHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH----HHHT
T ss_pred HHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh----hhcc
Confidence 3222111000 000 012233444444333333333333333332211 0155
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q 007405 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAM 269 (605)
Q Consensus 229 ~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~ 269 (605)
..++..+...++|..++|.+++++.+ .+|++.|++.++..
T Consensus 138 ~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~ 177 (417)
T 2cfq_A 138 FEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCA 177 (417)
T ss_dssp CCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHH
Confidence 55666666788999999999999887 58999988765543
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.49 E-value=1.9e-13 Score=145.90 Aligned_cols=178 Identities=15% Similarity=0.131 Sum_probs=149.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhcc--chHHHHHHHHHHH
Q 007405 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL--GRYWTIAIFTTIY 146 (605)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~--GR~~~~~~~~~~~ 146 (605)
+.++...+..++....++++..+++.|+++.+|++..+++++.+.+.++..++.++.|+++|| + |||+.+.++.++.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~ 330 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTL 330 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHH
Confidence 457777888888888888999999999998899999999999999999999999999999999 5 8888888777665
Q ss_pred H-HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhh
Q 007405 147 L-AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (605)
Q Consensus 147 ~-~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~ 225 (605)
. ++.+++.+. ++ .+.+.+.+..++.|++.++..+...++..|.+|+++
T Consensus 331 ~~~~~~~~~~~-------~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----- 379 (451)
T 1pw4_A 331 VTIATIVYWMN-------PA-------------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA----- 379 (451)
T ss_dssp HHHHHHHTTSC-------CT-------------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH-----
T ss_pred HHHHHHHHHHh-------cc-------------------cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh-----
Confidence 5 444444332 10 245666777788899988888888999999999998
Q ss_pred hhhHHHHHHHHHHHH-HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHh
Q 007405 226 HLDRFFNFFYLSVTV-GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (605)
Q Consensus 226 ~r~~~~~~~~~~~~i-g~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~ 279 (605)
|++.+++++...++ |..++|.+.+++.+..||+..|++.+++.+++.++.+..
T Consensus 380 -~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 380 -AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred -hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 999999999999999999999998888777766655543
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.35 E-value=2.8e-11 Score=128.55 Aligned_cols=165 Identities=10% Similarity=0.011 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHH
Q 007405 70 AALFIFGNEMAERMAYFGLSVNMVTF-MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (605)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~y-l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~ 148 (605)
.++...+..++.....+++..+++.| +++.+|.+..+++...+.+.++..++.+++|+++||+ |||+++.++.++..+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~ 337 (438)
T 3o7q_A 259 HWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMA 337 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence 35666666777777778888999999 8888899999999999999999999999999999997 999999999988888
Q ss_pred HHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhh
Q 007405 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (605)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~ 228 (605)
+.+++.+. .+... ++..++.|++.+...+...++..|.+|++ ++
T Consensus 338 ~~~~~~~~----------------------------~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~ 381 (438)
T 3o7q_A 338 LCLISAFA----------------------------GGHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TK 381 (438)
T ss_dssp HHHHHHHC----------------------------CHHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HH
T ss_pred HHHHHHHc----------------------------CCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-------cc
Confidence 87776654 23333 33447888999999999999999998854 45
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc-hHHHHHHHHHHHHHH
Q 007405 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGIS 272 (605)
Q Consensus 229 ~~~~~~~~~~~ig~~i~p~i~~~l~~~~g-w~~~f~~~~~~~~i~ 272 (605)
.+.++.. ...+|..++|.+.|++.+..| ++..|++.+++.++.
T Consensus 382 ~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 425 (438)
T 3o7q_A 382 YGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI 425 (438)
T ss_dssp HHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHH
T ss_pred chhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 5555544 556999999999999999998 999888765554443
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.33 E-value=9.9e-12 Score=131.96 Aligned_cols=173 Identities=10% Similarity=0.053 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---hhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHH
Q 007405 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKS---FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (605)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s---~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~ 147 (605)
.+...+..++....++....+++.|+.+.++.. ....+...++..++..++.+++|+++||+ |||+++.++.++..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~~ 300 (417)
T 2cfq_A 222 LWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMS 300 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHH
Confidence 344444334444444455566888887766532 33445666666677788899999999997 99999988888777
Q ss_pred HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhh
Q 007405 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (605)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r 227 (605)
++.+++.+. .+.+.+++..++.+++.+...+....+.+|.+|++. |
T Consensus 301 ~~~~~~~~~----------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~ 346 (417)
T 2cfq_A 301 VRIIGSSFA----------------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------S 346 (417)
T ss_dssp HHHHHHTTC----------------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------H
T ss_pred HHHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------H
Confidence 765555432 234555566666777777666777889999999988 9
Q ss_pred hHHHHH-HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Q 007405 228 DRFFNF-FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (605)
Q Consensus 228 ~~~~~~-~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~ 278 (605)
+++.++ ++....+|+.++|.++|++.+..|+...|.+.+++.+++.++.+.
T Consensus 347 g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 398 (417)
T 2cfq_A 347 ATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp HHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHh
Confidence 999988 477788999999999999998888888888877777666655443
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.13 E-value=1.1e-10 Score=126.28 Aligned_cols=185 Identities=12% Similarity=0.008 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHH-----HHHHH
Q 007405 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA-----IFTTI 145 (605)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~-----~~~~~ 145 (605)
.+..++..++....++....+++.|+.+.++.+..+.+.......++..++.++.|+++||+ |||+... ++.++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~ 363 (491)
T 4aps_A 285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMF 363 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHH
Confidence 44555555666666666778889999998888877778888888888899999999999997 9886554 66666
Q ss_pred HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhh
Q 007405 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (605)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~ 225 (605)
..++.+++.+........+ ..+...++++.++.|++.+...+...++..|.+|++.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~----- 419 (491)
T 4aps_A 364 AGLSFLLMAIPGALYGTSG-------------------KVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF----- 419 (491)
T ss_dssp HHHHHTTTHHHHHHCCCCT-------------------TCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC-----
T ss_pred HHHHHHHHHHHHHhcCCCC-------------------CccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH-----
Confidence 6666555544311000000 0245666777788999999989999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhccc
Q 007405 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL 282 (605)
Q Consensus 226 ~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~ 282 (605)
|+++.++++...++|..++|.+.+++.+. ++.+.|++.+++.+++.++.+...++
T Consensus 420 -~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 420 -NSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp -SSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC---
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998888764 66677777776666665555554443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.06 E-value=1.3e-08 Score=109.84 Aligned_cols=181 Identities=9% Similarity=0.011 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Q 007405 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI 153 (605)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~~~~~~~~~ 153 (605)
.....++.....+....+..+++.+..+.+............+...++.++++++.||+ |||+.++.+.....++.+.+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~~~~l 359 (491)
T 4gc0_A 281 GVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSL 359 (491)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHHHHHH
Confidence 33333333333333344445666778888888877777777888899999999999997 99999999988888877766
Q ss_pred HHhhhccccCCCCCcccccccccCCCCCccchhHHHHH-HHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHH
Q 007405 154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLY-TVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN 232 (605)
Q Consensus 154 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~-~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~ 232 (605)
+...... . .....+. +..+..+++ .+..+....+.+|.+|++. |+++.+
T Consensus 360 ~~~~~~~---~--------------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~E~fPt~~------R~~~~g 409 (491)
T 4gc0_A 360 GTAFYTQ---A--------------------PGIVALLSMLFYVAAFA-MSWGPVCWVLLSEIFPNAI------RGKALA 409 (491)
T ss_dssp HHHHHTT---C--------------------CHHHHHHHHHHHHHHHH-TTTTHHHHHHHHHSSCTTT------HHHHHH
T ss_pred HHHHhcc---c--------------------chHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhCCHhH------HHHHHH
Confidence 6542200 0 1222222 222222233 3345677789999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh------hhchHHHHHHHHHHHHHHHHHHHHhcccccc
Q 007405 233 FFYLSVTVGAIVAFTLVVYIQM------EHGWGSAFGALAIAMGISNMLFFIGTPLYRH 285 (605)
Q Consensus 233 ~~~~~~~ig~~i~p~i~~~l~~------~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~ 285 (605)
+.+....+++.+++.+...+.+ ..++.+.|++.+++.+++.+..++..||.+.
T Consensus 410 ~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg 468 (491)
T 4gc0_A 410 IAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKG 468 (491)
T ss_dssp HHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCC
Confidence 9998889999888887766543 3455667888777777777777777776544
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.86 E-value=1.3e-09 Score=113.39 Aligned_cols=164 Identities=12% Similarity=-0.097 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHH-HH
Q 007405 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI-YL 147 (605)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~GR~~~~~~~~~~-~~ 147 (605)
+.++...+..++.....+++..+++.|+++.+|.+..+++.......++..++.++.|+++||+ ||+ +..+..+ ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence 3466677777777888888888999999998999999999999999999999999999999997 872 2333322 22
Q ss_pred HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhh
Q 007405 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (605)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r 227 (605)
++......... ++ .+.+.+++..++.|++.+...+...++..|.+| ++ |
T Consensus 276 ~~~~~~~~~~~-----~~-------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~ 324 (375)
T 2gfp_A 276 AGLLMWIPDWF-----GV-------------------MNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------A 324 (375)
T ss_dssp TSSSSSHHHHH-----HH-------------------HHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------H
T ss_pred HHHHHHHHhhh-----cc-------------------ccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------c
Confidence 22221111100 00 245566677788899999999999999999998 66 9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHH
Q 007405 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 266 (605)
Q Consensus 228 ~~~~~~~~~~~~ig~~i~p~i~~~l~~~~gw~~~f~~~~ 266 (605)
++..++.+...++|..++|.+.+.+.+..+|...+++.+
T Consensus 325 g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 325 GTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 999999999999999999999999988778887776643
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.21 E-value=8.9e-07 Score=96.17 Aligned_cols=90 Identities=16% Similarity=0.143 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh--ch-----
Q 007405 186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH--GW----- 258 (605)
Q Consensus 186 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~p~i~~~l~~~~--gw----- 258 (605)
+.+.++++.++.|++.+...+...++..|.+|++. |++++++++...++|..++|.+.+++.+.. +|
T Consensus 404 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~ 477 (524)
T 2xut_A 404 SIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM------KGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTG 477 (524)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC------CTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH------HhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 45566777788999999999999999999999999 999999999999999999999999987643 23
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHhcc
Q 007405 259 ----GSAFGALAIAMGISNMLFFIGTP 281 (605)
Q Consensus 259 ----~~~f~~~~~~~~i~~~~~~~~~~ 281 (605)
+..|++.+++.+++.++++...+
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (524)
T 2xut_A 478 MSVTAFQMFFFAGFAILAAIVFALYAR 504 (524)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 22355555555555554444333
Done!