BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007406
         (605 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9PG57|SYP_XYLFA Proline--tRNA ligase OS=Xylella fastidiosa (strain 9a5c) GN=proS
           PE=3 SV=2
          Length = 564

 Score = 38.5 bits (88), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 13/106 (12%)

Query: 174 ERALTNGVLSIQRGTEPGVMIYMLPLGRGDS---KAKSYHGWGTRFSSFWCCYGTGIESF 230
           +RA+  G + I RG E G   ++  LGR  +   KA     +G   +    CYG G+   
Sbjct: 391 DRAVDGGKICIARGIEVG---HVFQLGRKYAEAMKATVLDEYGKAVTMTMGCYGIGVSRI 447

Query: 231 SKLGDSIYFEEEGNVPGLYIIQYISSSLDWKSGNIVLNQKVDPVVS 276
                +   E+  +V G   I + +S   W+    V+N K DPV++
Sbjct: 448 V----AAAIEQNHDVAG---IIWPASIAPWQVAVCVINPKKDPVIT 486


>sp|O50313|BCHD_CHLP8 Magnesium-chelatase 67 kDa subunit OS=Chlorobaculum parvum (strain
           NCIB 8327) GN=bchD PE=3 SV=1
          Length = 619

 Score = 33.5 bits (75), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 2/76 (2%)

Query: 506 RLVAGLDGKDETISLEAVNQNGCF--VYSGVNFNSGASLKLSCSTESSEDGFNEAVSFVM 563
           RL+ G+D +    S + V Q+G     + GV +    SL  S +     D  +     V 
Sbjct: 67  RLIGGVDLEATLASGQRVVQHGVLSKAHKGVLYVDSLSLLDSSAVSHIMDAMSRGAVIVE 126

Query: 564 EKGISEYHPISFVAKG 579
            +G+SE HP  F+  G
Sbjct: 127 REGLSEVHPADFMLVG 142


>sp|Q93SW0|BCHD_CHLTE Magnesium-chelatase 67 kDa subunit OS=Chlorobium tepidum (strain
           ATCC 49652 / DSM 12025 / TLS) GN=bchD PE=3 SV=1
          Length = 620

 Score = 33.1 bits (74), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 2/76 (2%)

Query: 506 RLVAGLDGKDETISLEAVNQNGCF--VYSGVNFNSGASLKLSCSTESSEDGFNEAVSFVM 563
           RL+ G+D +    S + V Q+G     + GV +    SL  S +     D  +     V 
Sbjct: 67  RLIGGVDLEATLASGQRVVQHGVLSKAHKGVLYVDSLSLLDSSAVSHIMDAMSRGAVIVE 126

Query: 564 EKGISEYHPISFVAKG 579
            +G+SE HP  F+  G
Sbjct: 127 REGLSEVHPADFMLVG 142


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.132    0.396 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 228,793,382
Number of Sequences: 539616
Number of extensions: 9742536
Number of successful extensions: 21345
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 21343
Number of HSP's gapped (non-prelim): 12
length of query: 605
length of database: 191,569,459
effective HSP length: 123
effective length of query: 482
effective length of database: 125,196,691
effective search space: 60344805062
effective search space used: 60344805062
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)