Query 007406
Match_columns 605
No_of_seqs 209 out of 790
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 23:09:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007406.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007406hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3533 Uncharacterized protei 100.0 8.1E-85 1.8E-89 690.1 25.2 350 1-380 155-505 (589)
2 PF07944 DUF1680: Putative gly 100.0 1.3E-83 2.8E-88 716.7 35.0 357 1-376 149-520 (520)
3 PF05270 AbfB: Alpha-L-arabino 99.7 5.3E-17 1.2E-21 151.8 8.6 112 469-588 2-116 (142)
4 PF05270 AbfB: Alpha-L-arabino 99.3 4.2E-12 9.1E-17 119.0 9.3 124 419-562 12-141 (142)
5 cd00249 AGE AGE domain; N-acyl 97.6 0.00039 8.4E-09 74.7 10.7 158 34-198 118-289 (384)
6 PF03663 Glyco_hydro_76: Glyco 97.3 0.00036 7.8E-09 75.7 5.7 133 38-178 95-251 (370)
7 cd00249 AGE AGE domain; N-acyl 97.1 0.0047 1E-07 66.4 12.7 175 37-222 179-374 (384)
8 PF03663 Glyco_hydro_76: Glyco 97.0 0.00045 9.8E-09 74.9 3.0 141 33-183 38-189 (370)
9 PF07944 DUF1680: Putative gly 96.8 0.0024 5.1E-08 72.4 7.2 137 34-181 128-267 (520)
10 COG1331 Highly conserved prote 96.5 0.013 2.8E-07 67.2 10.5 143 33-184 413-573 (667)
11 PF07470 Glyco_hydro_88: Glyco 96.1 0.013 2.8E-07 62.4 6.9 139 34-193 28-168 (336)
12 PF06662 C5-epim_C: D-glucuron 95.6 0.025 5.4E-07 56.0 6.3 135 34-175 33-186 (189)
13 cd04791 LanC_SerThrkinase Lant 94.2 0.23 5E-06 52.0 9.4 126 34-184 142-276 (321)
14 COG4225 Predicted unsaturated 93.7 0.084 1.8E-06 56.2 4.9 144 31-194 36-180 (357)
15 COG3533 Uncharacterized protei 93.3 0.096 2.1E-06 58.2 4.7 122 34-180 134-260 (589)
16 PF07221 GlcNAc_2-epim: N-acyl 93.3 0.083 1.8E-06 56.4 4.1 158 38-199 88-263 (346)
17 cd04791 LanC_SerThrkinase Lant 93.0 0.58 1.3E-05 48.9 9.9 133 34-178 86-227 (321)
18 PF07221 GlcNAc_2-epim: N-acyl 84.0 0.88 1.9E-05 48.5 3.3 130 36-177 26-168 (346)
19 PF07470 Glyco_hydro_88: Glyco 80.6 5.5 0.00012 42.4 7.8 132 36-184 128-287 (336)
20 PF15095 IL33: Interleukin 33; 78.0 30 0.00066 35.2 11.3 90 440-533 155-246 (268)
21 cd04792 LanM-like LanM-like pr 77.4 8.3 0.00018 46.3 8.8 127 34-177 544-672 (825)
22 PF01532 Glyco_hydro_47: Glyco 76.4 6.5 0.00014 44.1 7.1 144 30-180 143-311 (452)
23 COG1331 Highly conserved prote 73.8 8.2 0.00018 45.0 7.1 80 33-112 470-566 (667)
24 PTZ00470 glycoside hydrolase f 71.0 26 0.00057 40.2 10.2 80 38-117 162-258 (522)
25 cd04792 LanM-like LanM-like pr 65.6 20 0.00043 43.0 8.4 119 33-179 493-618 (825)
26 PF09492 Pec_lyase: Pectic aci 64.7 12 0.00027 39.5 5.6 89 90-185 48-145 (289)
27 PF05726 Pirin_C: Pirin C-term 62.3 45 0.00097 29.5 8.0 53 314-376 31-86 (104)
28 PTZ00470 glycoside hydrolase f 59.5 21 0.00046 40.9 6.7 94 82-177 156-251 (522)
29 cd04434 LanC_like LanC-like pr 58.9 57 0.0012 33.7 9.5 128 34-183 162-300 (343)
30 TIGR02474 pec_lyase pectate ly 58.1 58 0.0013 34.6 9.2 126 38-177 51-212 (290)
31 COG4225 Predicted unsaturated 57.3 10 0.00022 40.9 3.4 72 81-176 36-107 (357)
32 cd04794 euk_LANCL eukaryotic L 56.3 22 0.00047 38.0 5.9 77 34-116 227-305 (343)
33 TIGR02474 pec_lyase pectate ly 54.8 44 0.00095 35.5 7.6 91 90-187 53-152 (290)
34 cd04794 euk_LANCL eukaryotic L 53.5 67 0.0014 34.3 9.1 124 35-179 169-301 (343)
35 PF01532 Glyco_hydro_47: Glyco 50.1 61 0.0013 36.4 8.3 126 38-177 84-240 (452)
36 cd04793 LanC LanC is the cycla 49.5 23 0.00049 38.4 4.7 79 34-115 247-327 (382)
37 PF06917 Pectate_lyase_2: Peri 47.8 21 0.00045 40.4 4.0 84 38-124 391-479 (557)
38 TIGR03000 plancto_dom_1 Planct 47.8 70 0.0015 27.2 6.3 21 297-322 3-23 (75)
39 KOG2787 Lanthionine synthetase 46.8 31 0.00068 37.1 5.0 73 34-116 283-361 (403)
40 cd04434 LanC_like LanC-like pr 42.9 34 0.00074 35.5 4.7 76 34-114 222-299 (343)
41 COG4403 LcnDR2 Lantibiotic mod 40.4 28 0.0006 41.9 3.8 72 35-108 746-820 (963)
42 COG2942 N-acyl-D-glucosamine 2 40.3 67 0.0014 35.4 6.4 115 79-196 172-287 (388)
43 cd04793 LanC LanC is the cycla 39.6 1.9E+02 0.0041 31.2 10.0 129 35-181 176-326 (382)
44 COG1188 Ribosome-associated he 39.1 61 0.0013 29.1 4.9 36 311-355 33-68 (100)
45 PHA02651 IL-1 receptor antagon 38.6 19 0.00042 35.0 1.8 40 503-545 104-143 (165)
46 PF00759 Glyco_hydro_9: Glycos 37.0 64 0.0014 35.6 5.9 24 38-61 222-245 (444)
47 PF14200 RicinB_lectin_2: Rici 32.9 2.7E+02 0.0058 24.1 8.1 43 499-545 48-91 (105)
48 COG1339 Transcriptional regula 29.4 56 0.0012 32.8 3.4 47 300-353 145-199 (214)
49 TIGR00187 ribE riboflavin synt 29.3 1.4E+02 0.003 30.0 6.3 54 296-350 21-90 (200)
50 PLN00119 endoglucanase 28.3 1E+02 0.0022 35.2 5.6 63 101-176 203-265 (489)
51 COG2942 N-acyl-D-glucosamine 2 28.2 1.8E+02 0.004 32.1 7.3 129 38-177 181-332 (388)
52 PRK09289 riboflavin synthase s 28.1 2.1E+02 0.0046 28.5 7.3 53 297-350 22-89 (194)
53 PHA02811 putative host range p 27.8 94 0.002 30.9 4.6 41 282-325 32-75 (197)
54 PF09586 YfhO: Bacterial membr 27.4 1.6E+02 0.0036 35.3 7.6 58 282-346 773-831 (843)
55 cd00100 IL1 Interleukin-1 homo 27.1 39 0.00085 32.2 1.8 28 516-545 103-130 (144)
56 KOG2787 Lanthionine synthetase 26.8 44 0.00095 36.0 2.3 27 35-61 330-356 (403)
57 PF06662 C5-epim_C: D-glucuron 26.6 55 0.0012 32.6 2.9 66 90-164 39-108 (189)
58 PF00340 IL1: Interleukin-1 / 26.4 52 0.0011 30.2 2.5 28 517-546 80-107 (120)
59 KOG2244 Highly conserved prote 26.1 2.2E+02 0.0049 32.9 7.6 136 33-176 507-671 (786)
60 PRK09289 riboflavin synthase s 25.3 2E+02 0.0043 28.7 6.5 58 294-351 115-187 (194)
61 smart00125 IL1 Interleukin-1 h 24.7 45 0.00098 31.9 1.8 28 516-545 106-133 (147)
62 COG4485 Predicted membrane pro 24.6 2.3E+02 0.0049 33.8 7.5 57 282-346 769-826 (858)
63 PRK13020 riboflavin synthase s 24.6 2.3E+02 0.0049 28.6 6.9 55 296-350 21-90 (206)
64 KOG2429 Glycosyl hydrolase, fa 22.8 60 0.0013 37.2 2.5 26 35-60 375-400 (622)
65 PRK13020 riboflavin synthase s 22.5 2.4E+02 0.0051 28.5 6.5 59 294-352 116-189 (206)
66 PF03287 Pox_C7_F8A: Poxvirus 21.1 1.4E+02 0.003 28.7 4.2 40 282-324 32-74 (149)
67 PLN02741 riboflavin synthase 20.6 2.6E+02 0.0056 28.0 6.3 61 285-348 110-187 (194)
68 PF13464 DUF4115: Domain of un 20.5 4.9E+02 0.011 21.4 9.2 26 294-324 37-62 (77)
No 1
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=8.1e-85 Score=690.12 Aligned_cols=350 Identities=27% Similarity=0.451 Sum_probs=319.7
Q ss_pred ChHHHHHHHHHHhhhhhccccHHHHHHHhhhcccchhHHHHHHHHHcCCHHHHHHHhhcccCCcchhhhhcCCCCCcccc
Q 007406 1 MTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGMNDVLYRLYTITQDPKHLLLAHLFDKPCFLGLLAVQADDISGFHA 80 (605)
Q Consensus 1 ~~~~m~~~~~~r~~~~~~~~~~~~~~~~l~~E~GGmne~L~~LY~~TGd~~yL~lA~~F~~~~~~~~l~~~~D~l~g~Ha 80 (605)
|+.++|||+.+ ++....+ |.++.+++++|+++|++||++|||+|||+||++|.+....+|++.+.|.+.+.||
T Consensus 155 V~~rlADhi~t----vfgp~~~---q~~g~~gH~eielAl~~Ly~~Tg~~rYL~LA~~Fi~~rg~~P~~~rg~e~~~gHA 227 (589)
T COG3533 155 VVCRLADHIAT----VFGPEED---QVPGYCGHPEIELALAELYRLTGDQRYLDLARRFIHQRGVEPLAQRGDELEGGHA 227 (589)
T ss_pred HHHHHHHhhhh----hcCcccc---ccccccCCCchhHHHHHHHHHhcChHHHHHHHHHHHHhccChhhcCchhhhhhhH
Confidence 46678888866 4555544 4567899999999999999999999999999999999999999999999999999
Q ss_pred ccccceeehhhhHHHHhCCchHHHHHHHHHHHhhccCeEeecCCCC-CCCCCCCccccccCCCCccccchhhHHHHHHHH
Q 007406 81 NTHIPVVIGSQMRYEVTGDPLYKVTGTFFMDIVNASHGYATGGTSA-GEFWSDPKRLASTLGTENEESCTTYNMLKVSRH 159 (605)
Q Consensus 81 nthiP~~~G~a~~Y~~TGd~~y~~aa~~fw~~v~~~h~y~TGG~g~-~E~f~~p~~L~~~l~~~~~EtCas~nmlkl~~~ 159 (605)
++.||+.+|+|++|+++||+.++.++++||+.|+++|+|||||+|+ +|+|+.+|+|++ .+.|+|||+|||||||++|
T Consensus 228 vr~iyl~~G~A~l~~~~gDds~r~~~~~lW~~~t~k~~YitGG~g~~~E~F~~~ydlpn--~~~yAEtCas~~l~~~a~R 305 (589)
T COG3533 228 VRQIYLYIGAADLAEETGDDSLRQAAEFLWQNVTTRQSYITGGNGSSNEHFGPDYDLPN--RTAYAETCASYNLLKLARR 305 (589)
T ss_pred HHHHHHhhhHHHHHHHhCCHHHHHHHHHHHHHhhhhheEEecccCCccccCCccccCcc--cchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999965 599999999999 5799999999999999999
Q ss_pred HHhccCCCchHHHHHHHHhcccccccCCCCCCcEEEeccCCCCCCCCcCCCCCCCccCcccccCCCccCcccccccceEE
Q 007406 160 LFRWTKEMVYADYYERALTNGVLSIQRGTEPGVMIYMLPLGRGDSKAKSYHGWGTRFSSFWCCYGTGIESFSKLGDSIYF 239 (605)
Q Consensus 160 Lf~~tgD~~YaD~~ERalyN~ila~q~~~~~g~~~Y~~pL~~g~~k~~~~~~~~~~~~~f~CC~gtg~e~~akl~~~iY~ 239 (605)
||.|.+|.+|||+|||+|||++|++|++ |+++|+|+|||..+.. +.+.++++||||.||++|.++++++|||.
T Consensus 306 ml~~~~d~~yaDvmErALYN~iL~g~sl-Dg~~ffY~nPle~~gr------h~r~~w~~c~CCppn~ar~~as~g~yiY~ 378 (589)
T COG3533 306 MLGWGPDSQYADVMERALYNHILAGQSL-DGGMFFYFNPLESGGR------HSRQKWFSCWCCPPNGARSVASIGDYIYT 378 (589)
T ss_pred HhccCCCchHHHHHHHHHHhccccccCC-CCCeeEEecchhhCCC------ccccccccCCCCCCcHhhhhhhccceEEc
Confidence 9999999999999999999999999997 9999999999976531 12568899999999999999999999999
Q ss_pred eecCCCCcEEEEEeeCcEEEEEecceEEEEEeCCCCCCCCCeeEEEEEEeCCCCCeeeEEEEeecCcccCCCcEEEECCe
Q 007406 240 EEEGNVPGLYIIQYISSSLDWKSGNIVLNQKVDPVVSWDPYLRMTHTFSSKQEASQSSSLNLRIPLWTNSNGAKATLNGQ 319 (605)
Q Consensus 240 ~~~~~~~~LyVnLYipS~~~~~~~gv~v~q~t~~~yp~~~~~~V~ltv~~~~~~~~~ftL~LRIP~Wa~~~~~~v~VNG~ 319 (605)
..+ ++||||||+.|+++.+..+|.|+|+|+ |||++ +|+|||+.. .+.+|+|+||||+||. .++++|||+
T Consensus 379 ~~~---d~lyvnLy~~S~~~l~~~~v~irqet~--yPw~g--~v~ltv~~~--~p~~~tlaLRlP~W~a--~~tl~vNG~ 447 (589)
T COG3533 379 RAD---DALYVNLYIASTADLPGDDVQIRQETN--YPWSG--QVKLTVERA--QPVLFTLALRLPAWCA--APTLRVNGK 447 (589)
T ss_pred cCC---CEEEEEEeecccccccccceEEEeccC--CCCcC--eeEEEEecC--CCceEEEEEecccccC--CcEEEEcCc
Confidence 976 689999999999999988999999998 89998 999999974 5899999999999999 799999998
Q ss_pred eecCCCCCCEEEEEeeeCCCCEEEEEecceeEEEecCCCccccCCeEEEeecceeEeeecC
Q 007406 320 SLSLPAPGNFISVTQRWSSTDKLTIQLPINLRTEAIKDDRPAYASIQAILYGPYLLAGHTS 380 (605)
Q Consensus 320 ~~~~~~~ggy~~I~R~W~~GD~V~L~lpm~lr~~~~~d~~~~~~~~vAv~~GPlVlA~~~~ 380 (605)
.+.....+||++|+|+|++||+|+|.|||++|+...|+++... + ||+|||||||++..
T Consensus 448 ~~~~~~~~GYa~i~R~Wq~GDrV~L~LpM~vr~y~nP~~r~~~-G--Ai~rGPlVyc~e~~ 505 (589)
T COG3533 448 EVIQTRGKGYARISREWQAGDRVELMLPMPVRIYANPDVRHDV-G--AIMRGPLVYCAEAG 505 (589)
T ss_pred chhhccCCCeeeeeehhcCCCeEEEeecceeEeecCCcchhhh-h--hhhcCCeEEEEecC
Confidence 7776778999999999999999999999999988888886442 2 99999999998653
No 2
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=100.00 E-value=1.3e-83 Score=716.71 Aligned_cols=357 Identities=35% Similarity=0.624 Sum_probs=327.3
Q ss_pred ChHHHHHHHHHHhhhhhccccHHHHHHHhhhcccchhHHHHHHHHHcCCHHHHHHHhhcccCCcchh--hhhcCCCCCcc
Q 007406 1 MTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGMNDVLYRLYTITQDPKHLLLAHLFDKPCFLGL--LAVQADDISGF 78 (605)
Q Consensus 1 ~~~~m~~~~~~r~~~~~~~~~~~~~~~~l~~E~GGmne~L~~LY~~TGd~~yL~lA~~F~~~~~~~~--l~~~~D~l~g~ 78 (605)
++.+|+||++++++ .++.++++.++..|+||||++|++||++|||++||+||++|++..++++ ++.+.|.+++.
T Consensus 149 v~~k~ad~~~~~~~----~~~~~~~~~~~~~~~~~i~~~l~~LY~~Tgd~~yL~lA~~f~~~~~~~~~~~~~~~d~~~~~ 224 (520)
T PF07944_consen 149 VATKLADWVYRRLS----RLGPEPGQKMGYPEHGGINEALVRLYEITGDERYLDLAEYFVDQRGFDPYDLAYGQDHLPGR 224 (520)
T ss_pred HHHHHHHHHHHHhc----cCCHHHhhcccccccchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCCchhhcCccCCCc
Confidence 47899999977654 5666777777889999999999999999999999999999999999888 89999999999
Q ss_pred ccccccceee-------hhhhHHHHhCCchHHHHHHHHHHHhhccCeEeecCCCCC---CCCCCCccccccCCCCccccc
Q 007406 79 HANTHIPVVI-------GSQMRYEVTGDPLYKVTGTFFMDIVNASHGYATGGTSAG---EFWSDPKRLASTLGTENEESC 148 (605)
Q Consensus 79 HanthiP~~~-------G~a~~Y~~TGd~~y~~aa~~fw~~v~~~h~y~TGG~g~~---E~f~~p~~L~~~l~~~~~EtC 148 (605)
|+|+|+|.++ |++++|++|||+.|++++++||++|+++|||+|||+|++ |+|++++++++ ...++|||
T Consensus 225 ~a~~~~~h~vr~~y~~~g~a~~y~~tgd~~~~~a~~~~w~~v~~~~~y~tGg~g~~~~~E~f~~~~~lp~--~~~~~EtC 302 (520)
T PF07944_consen 225 HANTHIGHAVRAMYLYSGAADLYEETGDEEYLDAAENFWDNVVRHHMYATGGIGSDHEGEHFGPPYDLPN--RLAYAETC 302 (520)
T ss_pred cccceeeEEEEhhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHhcCeeccCCCcCCCCCccCCCCCCCCc--CCCCcccc
Confidence 9999999998 999999999999999999999999999999999999999 99999999988 35569999
Q ss_pred hhhHHHHHHHHHHhccCCCchHHHHHHHHhcccccccCCCCCCcEEEeccCCCCCCCCcCCCCCCCccCcccccCCCccC
Q 007406 149 TTYNMLKVSRHLFRWTKEMVYADYYERALTNGVLSIQRGTEPGVMIYMLPLGRGDSKAKSYHGWGTRFSSFWCCYGTGIE 228 (605)
Q Consensus 149 as~nmlkl~~~Lf~~tgD~~YaD~~ERalyN~ila~q~~~~~g~~~Y~~pL~~g~~k~~~~~~~~~~~~~f~CC~gtg~e 228 (605)
++|||||++++||++|||++|+|+|||++||++|++|++ |++.++|++||+++..|... ..+.+++++||||+||++|
T Consensus 303 as~~~~~~~~~L~~~tgd~~yaD~~Er~lyN~~la~~~~-d~~~~~Y~~pl~~~~~~~~~-~~~~~~~~~~~CC~~n~~r 380 (520)
T PF07944_consen 303 ASVNMMKLARRLFRLTGDARYADYYERALYNALLAGQSP-DGGSFFYFNPLNSGPYKHRW-KNYRTPWFSFWCCPGNGAR 380 (520)
T ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHhcccccccCC-CCCeeEEecCCccCcCcccc-ccccCCCCCCCCCcchHHH
Confidence 999999999999999999999999999999999999997 89999999999887654221 2567788999999999999
Q ss_pred cccccccceEEeecCCCCcEEEEEeeCcEEEEEecc--eEEEEEeCCCCCCCCCeeEEEEEEeCCCCCeeeEEEEeecCc
Q 007406 229 SFSKLGDSIYFEEEGNVPGLYIIQYISSSLDWKSGN--IVLNQKVDPVVSWDPYLRMTHTFSSKQEASQSSSLNLRIPLW 306 (605)
Q Consensus 229 ~~akl~~~iY~~~~~~~~~LyVnLYipS~~~~~~~g--v~v~q~t~~~yp~~~~~~V~ltv~~~~~~~~~ftL~LRIP~W 306 (605)
+++||+++||++++ ++||||||+||+++|+.++ |+|+|+|+ |||++ +|+|+|++. ++.+|+|+||||+|
T Consensus 381 ~~~~~~~~iy~~~~---~~l~v~ly~~s~~~~~~~~~~v~i~q~T~--yP~~~--~v~i~v~~~--~~~~f~l~lRIP~W 451 (520)
T PF07944_consen 381 GWAKLPDYIYFRDD---DGLYVNLYIPSELTWPVGGGTVTITQETD--YPFEG--TVRITVSPD--KPVPFTLRLRIPSW 451 (520)
T ss_pred HHHHHhhhheEecC---CEEEEEEEcceEEEEEECCcEEEEEEecC--CCCCC--CEEEEEEcC--CCccEEEEEEccCC
Confidence 99999999999985 6999999999999999988 88888888 88998 899999763 58899999999999
Q ss_pred ccCCCcEEEECCee-ecCCCCCCEEEEEeeeCCCCEEEEEecceeEEEecCCCccccCCeEEEeecceeEe
Q 007406 307 TNSNGAKATLNGQS-LSLPAPGNFISVTQRWSSTDKLTIQLPINLRTEAIKDDRPAYASIQAILYGPYLLA 376 (605)
Q Consensus 307 a~~~~~~v~VNG~~-~~~~~~ggy~~I~R~W~~GD~V~L~lpm~lr~~~~~d~~~~~~~~vAv~~GPlVlA 376 (605)
|+ +++|+|||++ .....++||++|+|+|++||+|+|+|||++|++++++.+++..+.+||+|||||||
T Consensus 452 a~--~~~i~vNG~~~~~~~~~~gy~~i~r~W~~gD~v~l~lpm~~r~~~~~~~~~~~~~~vAv~rGPlV~a 520 (520)
T PF07944_consen 452 AK--GATIRVNGEPVVDTAVPGGYLTIEREWKDGDVVELRLPMEVRLEPANPRVPDDPGRVAVMRGPLVYA 520 (520)
T ss_pred CC--CcEEEECCEeCCCCcCCCCeEEEEeeccCCcEEEEEecCeeEEEeCCCCCccCCCeEEEEeCchhcC
Confidence 98 7999999999 55567999999999999999999999999999999666666689999999999998
No 3
>PF05270 AbfB: Alpha-L-arabinofuranosidase B (ABFB); InterPro: IPR007934 This family consists of several fungal alpha-L-arabinofuranosidase B proteins. L-Arabinose is a constituent of plant cell wall polysaccharides. It is found in a polymeric form in L-arabinan, in which the backbone is formed by 1,5-a- linked l-arabinose residues that can be branched via 1,2-a- and 1,3-a-linked l-arabinofuranose side chains. AbfB hydrolyses 1,5-a, 1,3-a and 1,2-a linkages in both oligosaccharides and polysaccharides, which contain terminal non-reducing l-arabinofuranoses in side chains [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3AKI_A 3AKF_A 3AKH_A 3AKG_A 2D44_A 1WD3_A 2D43_A 1WD4_A 3KMV_E.
Probab=99.69 E-value=5.3e-17 Score=151.82 Aligned_cols=112 Identities=21% Similarity=0.329 Sum_probs=88.8
Q ss_pred eeeeccCCCCCceEEEecCceeEEEeCCCCC---CCCceEEEeecCCCCCCeeEEEeccCCCeEEEeccccCCCCeEEEE
Q 007406 469 SVMLEPFDFPGMLVVQQGTDGELVVSDSPKE---GDSSVFRLVAGLDGKDETISLEAVNQNGCFVYSGVNFNSGASLKLS 545 (605)
Q Consensus 469 ~v~lepfd~Pg~~v~~~~~~~~l~v~~~~~~---~~~s~f~~vpgl~g~~~~vsles~~~pg~~~~~~~~~~~g~~~~~~ 545 (605)
+++++.++.|++||+|.+....+.+..+..+ ..|++|+|||||.+ +++|||||+++||.|||+. +..|+|+
T Consensus 2 ~~~~~s~~~~~ryirh~~~~~~~~~v~~~s~~~~r~da~f~vvpGLa~-~~~vSfES~~~PG~yLrh~-----~~~v~l~ 75 (142)
T PF05270_consen 2 SLRLTSPNYPDRYIRHRGSLVRLDPVSSSSSALDRADATFRVVPGLAD-SSCVSFESVNYPGYYLRHS-----NFRVRLE 75 (142)
T ss_dssp EEEEEESSSTTEEEEEETTEEEEEES-SSGGHHHHHGG-EEEEE-SS--TTCEEEEESSSTTEEEEEE-----TTEEEEE
T ss_pred eEEEECCCCCCeEEEEcCceEEEeeccCCcchhhccCceEEEEEccCC-CCEEEEEECCCCCcEEEEE-----CCEEEEe
Confidence 4789999999999999996666655433222 24899999999987 5899999999999999984 7899999
Q ss_pred eccCCCccccccccccccccCccccCcceEEEecCCCceeecc
Q 007406 546 CSTESSEDGFNEAVSFVMEKGISEYHPISFVAKGARRNFLLAP 588 (605)
Q Consensus 546 ~~~~~~~~~f~~~asF~~~~gl~~~~~~Sf~a~g~~~~~ll~p 588 (605)
+. +++..|.++|+|+..+||+...-+||+...-++.||.+=
T Consensus 76 -~~-d~s~~F~~dATF~~~~Gl~~~g~~sfeS~n~Pg~ylrh~ 116 (142)
T PF05270_consen 76 -KN-DGSALFREDATFCPRPGLAGPGYVSFESYNYPGRYLRHY 116 (142)
T ss_dssp -E---SSHHHHHHT-EEEEE-SSSTTEEEEEESSSTTEEEEEE
T ss_pred -ec-CCCccccCCceEEEecCCCCCCcceEEEecCCCeEEEEE
Confidence 55 778899999999999999995557999999999999753
No 4
>PF05270 AbfB: Alpha-L-arabinofuranosidase B (ABFB); InterPro: IPR007934 This family consists of several fungal alpha-L-arabinofuranosidase B proteins. L-Arabinose is a constituent of plant cell wall polysaccharides. It is found in a polymeric form in L-arabinan, in which the backbone is formed by 1,5-a- linked l-arabinose residues that can be branched via 1,2-a- and 1,3-a-linked l-arabinofuranose side chains. AbfB hydrolyses 1,5-a, 1,3-a and 1,2-a linkages in both oligosaccharides and polysaccharides, which contain terminal non-reducing l-arabinofuranoses in side chains [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3AKI_A 3AKF_A 3AKH_A 3AKG_A 2D44_A 1WD3_A 2D43_A 1WD4_A 3KMV_E.
Probab=99.33 E-value=4.2e-12 Score=119.01 Aligned_cols=124 Identities=18% Similarity=0.295 Sum_probs=87.1
Q ss_pred eEEEeccCCceeeeecCCC-CCcccccEEEEEEecCCCCccccccccCCCceeeeccCCCCCceEEEecCceeEEEeCCC
Q 007406 419 AFVLSNSNQSITMEKFPES-GTDAALHATFRLIMKEESSSEVSSLKDVIGKSVMLEPFDFPGMLVVQQGTDGELVVSDSP 497 (605)
Q Consensus 419 ~f~~~~~~~~~~~~~~p~~-g~~~~~~~~fr~~~~~~~~~~~~~p~~~~g~~v~lepfd~Pg~~v~~~~~~~~l~v~~~~ 497 (605)
.-.+.+.+..+.+.+.... ++-....++||++++-.+ ...|++|+-|.||.||||.+ ..|.+....
T Consensus 12 ~ryirh~~~~~~~~~v~~~s~~~~r~da~f~vvpGLa~-----------~~~vSfES~~~PG~yLrh~~--~~v~l~~~d 78 (142)
T PF05270_consen 12 DRYIRHRGSLVRLDPVSSSSSALDRADATFRVVPGLAD-----------SSCVSFESVNYPGYYLRHSN--FRVRLEKND 78 (142)
T ss_dssp TEEEEEETTEEEEEES-SSGGHHHHHGG-EEEEE-SS------------TTCEEEEESSSTTEEEEEET--TEEEEEE--
T ss_pred CeEEEEcCceEEEeeccCCcchhhccCceEEEEEccCC-----------CCEEEEEECCCCCcEEEEEC--CEEEEeecC
Confidence 3345666777777774433 333455799999865222 23799999999999999986 667666444
Q ss_pred CCC---CCceEEEeecCCCCCCeeEEEeccCCCeEEEeccccCCCCeEEEEecc--CCCccccccccccc
Q 007406 498 KEG---DSSVFRLVAGLDGKDETISLEAVNQNGCFVYSGVNFNSGASLKLSCST--ESSEDGFNEAVSFV 562 (605)
Q Consensus 498 ~~~---~~s~f~~vpgl~g~~~~vsles~~~pg~~~~~~~~~~~g~~~~~~~~~--~~~~~~f~~~asF~ 562 (605)
.+. .|+.|..+|||.+ +|.|||||.++||+|||+. +..|+|. +. .+..+.|++++||.
T Consensus 79 ~s~~F~~dATF~~~~Gl~~-~g~~sfeS~n~Pg~ylrh~-----~~~l~l~-~~~g~d~~~~f~~datf~ 141 (142)
T PF05270_consen 79 GSALFREDATFCPRPGLAG-PGYVSFESYNYPGRYLRHY-----NGELYLA-PIGGYDNTDSFRADATFR 141 (142)
T ss_dssp SSHHHHHHT-EEEEE-SSS-TTEEEEEESSSTTEEEEEE-----TTEEEEE-ESSSGG-SHHHHHHT-EE
T ss_pred CCccccCCceEEEecCCCC-CCcceEEEecCCCeEEEEE-----CCEEEEe-cCCCcCcchhhccccEEe
Confidence 332 7789999999999 7999999999999999986 7899999 42 12356788888886
No 5
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=97.57 E-value=0.00039 Score=74.74 Aligned_cols=158 Identities=15% Similarity=0.106 Sum_probs=95.3
Q ss_pred cchhHHHHHHHHHcCCHHHHHHHhhccc---CCc-------chhhhhcCCCCCccccccccceeehhhhHHHHhCCchHH
Q 007406 34 GGMNDVLYRLYTITQDPKHLLLAHLFDK---PCF-------LGLLAVQADDISGFHANTHIPVVIGSQMRYEVTGDPLYK 103 (605)
Q Consensus 34 GGmne~L~~LY~~TGd~~yL~lA~~F~~---~~~-------~~~l~~~~D~l~g~HanthiP~~~G~a~~Y~~TGd~~y~ 103 (605)
.=+..+|.+||++|||++||++|+...+ ..+ +.....+...+.+ .|.|.-.+.++...+++|||+.|+
T Consensus 118 a~~l~ala~~~~at~d~~~l~~A~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~h~~~all~l~~~tgd~~~~ 195 (384)
T cd00249 118 AFALLAAAQAAKVGGDPEARALAEETIDLLERRFWEDHPGAFDEADPGTPPYRG--SNPHMHLLEAMLAAYEATGEQKYL 195 (384)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCCCCCC--CChhHHHHHHHHHHHHHhCCHHHH
Confidence 3345788899999999999999966521 111 1111111111222 344544567788899999999999
Q ss_pred HHHHHHHHHhhccCeEe--ecCCCCCCCCCCCccccccCCCCccccchhhHHHHHHHHHHhccCCCchHHHHHHHHhccc
Q 007406 104 VTGTFFMDIVNASHGYA--TGGTSAGEFWSDPKRLASTLGTENEESCTTYNMLKVSRHLFRWTKEMVYADYYERALTNGV 181 (605)
Q Consensus 104 ~aa~~fw~~v~~~h~y~--TGG~g~~E~f~~p~~L~~~l~~~~~EtCas~nmlkl~~~Lf~~tgD~~YaD~~ERalyN~i 181 (605)
+.++..++.+.+ +.+- .|+.- |++..+..+.........+---..+++++.-+|.++++|.+|.+..++. ++.+
T Consensus 196 ~~A~~l~~~~~~-~~~~~~~G~~~--e~~~~~~~~~~~~~~~~~~Pgh~~e~a~~ll~l~~~~~~~~~~~~a~~~-~~~~ 271 (384)
T cd00249 196 DRADEIADLILD-RFIDAESGVVR--EHFDEDWNPYNGDKGRHQEPGHQFEWAWLLLRIASRSGQAWLIEKARRL-FDLA 271 (384)
T ss_pred HHHHHHHHHHHH-HhcCcccCeEE--EEECCCCCCCcCcCCCcCCCchHHHHHHHHHHHHhhcCCHHHHHHHHHH-HHHH
Confidence 999999998875 4442 45542 5543221111100111122222344566777888899999999999774 5666
Q ss_pred ccc-cCCCCCCcEEE-ecc
Q 007406 182 LSI-QRGTEPGVMIY-MLP 198 (605)
Q Consensus 182 la~-q~~~~~g~~~Y-~~p 198 (605)
+.. .++ +.|.++| ..+
T Consensus 272 ~~~~~d~-~~G~~~~~~~~ 289 (384)
T cd00249 272 LALGWDP-ERGGLYYSFLD 289 (384)
T ss_pred HHhCcCc-cCCCEEEeeEC
Confidence 653 344 5566666 544
No 6
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=97.25 E-value=0.00036 Score=75.70 Aligned_cols=133 Identities=23% Similarity=0.156 Sum_probs=73.0
Q ss_pred HHHHHHHHHcCCH-----HHHHHHhhcccC------------CcchhhhhcCCCCCccccccccceeehhhhHHHHhCCc
Q 007406 38 DVLYRLYTITQDP-----KHLLLAHLFDKP------------CFLGLLAVQADDISGFHANTHIPVVIGSQMRYEVTGDP 100 (605)
Q Consensus 38 e~L~~LY~~TGd~-----~yL~lA~~F~~~------------~~~~~l~~~~D~l~g~HanthiP~~~G~a~~Y~~TGd~ 100 (605)
.++.++|++||++ +||++|+..-+. .++|........-....+.+.-|.++.++++|++|||+
T Consensus 95 la~l~aye~t~~~~~~~~~yL~~A~~i~~~~~~~wd~~~cgGGi~W~~~~~~~~~~~Kna~sN~~~~~laarL~~~t~~~ 174 (370)
T PF03663_consen 95 LALLRAYELTGDQPSDNPKYLDLAKEIFDFLISGWDDTSCGGGIWWSIDDTNSGYDYKNAISNGPAAQLAARLYRITGDQ 174 (370)
T ss_dssp HHHHHHHHHH--H-----HHHHHHHHHHHHHHHTB-SGG-GS-BEEET----TEEEEEEHHHHHHHHHHHHHHHHHH--H
T ss_pred HHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHHhcCCccCCCCccccccccCCCCCcccccchHHHHHHHHHHHHhcCCh
Confidence 7899999999999 999999987321 11111000000000011222333456689999999999
Q ss_pred hHHHHHHHHHHHhhccCeE-e-ecCCCCCCCCCCCccccccC-CCCccccchhhH---HHHHHHHHHhccCCC-chHHHH
Q 007406 101 LYKVTGTFFMDIVNASHGY-A-TGGTSAGEFWSDPKRLASTL-GTENEESCTTYN---MLKVSRHLFRWTKEM-VYADYY 173 (605)
Q Consensus 101 ~y~~aa~~fw~~v~~~h~y-~-TGG~g~~E~f~~p~~L~~~l-~~~~~EtCas~n---mlkl~~~Lf~~tgD~-~YaD~~ 173 (605)
.|++.|+..|+.+.+.+++ . +|-+-.+ +...- -....++-=||| +|.-+..|++.|++. .|.|..
T Consensus 175 ~Yl~~A~~~~~W~~~~~L~d~~~g~v~Dg--------~~~~~~c~~~~~~~~TYNqG~~l~a~~~Ly~~T~~~~~yl~~A 246 (370)
T PF03663_consen 175 TYLDWAKKIYDWMRDSGLIDPSTGLVYDG--------INIDGNCTNINKTKWTYNQGVFLGAAAYLYNATNDEQTYLDRA 246 (370)
T ss_dssp HHHHHHHHHHHHHHH-HHB--TTS-B--E--------E-TTSSS-B-TT---HHHHHHHHHHHHHHHHHH--H-HHHHHH
T ss_pred HHHHHHHHHHHHhhcceeEECCCcEEEeC--------CccCCCCCcCCCceechHHHHHHHHHHHHHHhcCCccHHHHHH
Confidence 9999999999999865555 1 1222111 10000 011233333344 677788999999876 999999
Q ss_pred HHHHh
Q 007406 174 ERALT 178 (605)
Q Consensus 174 ERaly 178 (605)
++.+-
T Consensus 247 ~~la~ 251 (370)
T PF03663_consen 247 EKLAD 251 (370)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 7
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=97.14 E-value=0.0047 Score=66.42 Aligned_cols=175 Identities=17% Similarity=0.134 Sum_probs=99.1
Q ss_pred hHHHHHHHHHcCCHHHHHHHhhccc---CCcchh----hhhc-CCCCCccc--ccccc-c-----eeehhhhHHHHhCCc
Q 007406 37 NDVLYRLYTITQDPKHLLLAHLFDK---PCFLGL----LAVQ-ADDISGFH--ANTHI-P-----VVIGSQMRYEVTGDP 100 (605)
Q Consensus 37 ne~L~~LY~~TGd~~yL~lA~~F~~---~~~~~~----l~~~-~D~l~g~H--anthi-P-----~~~G~a~~Y~~TGd~ 100 (605)
.++|.+||++|||++|++.|+.+.+ ..+.++ +.+. .+...-.. ....+ | .+..+..+++++||+
T Consensus 179 ~~all~l~~~tgd~~~~~~A~~l~~~~~~~~~~~~~G~~~e~~~~~~~~~~~~~~~~~~Pgh~~e~a~~ll~l~~~~~~~ 258 (384)
T cd00249 179 LEAMLAAYEATGEQKYLDRADEIADLILDRFIDAESGVVREHFDEDWNPYNGDKGRHQEPGHQFEWAWLLLRIASRSGQA 258 (384)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCcccCeEEEEECCCCCCCcCcCCCcCCCchHHHHHHHHHHHHhhcCCH
Confidence 4789999999999999999976532 111111 1000 11100000 01111 2 123456779999999
Q ss_pred hHHHHHHHHHHHhhccCeE-e-ecCCCCCCCCCCCccccccCCCCccccchhhHHHHHHHHHHhccCCCchHHHHHHH--
Q 007406 101 LYKVTGTFFMDIVNASHGY-A-TGGTSAGEFWSDPKRLASTLGTENEESCTTYNMLKVSRHLFRWTKEMVYADYYERA-- 176 (605)
Q Consensus 101 ~y~~aa~~fw~~v~~~h~y-~-TGG~g~~E~f~~p~~L~~~l~~~~~EtCas~nmlkl~~~Lf~~tgD~~YaD~~ERa-- 176 (605)
.|++.++..|+.+.+ +.. . .||+-. .+..+...+ ...+.-.....++++....|++++||.+|.+.+++.
T Consensus 259 ~~~~~a~~~~~~~~~-~~~d~~~G~~~~--~~~~~~~~~---~~~~~~~w~~~E~~~a~~~l~~~tgd~~~~~~~~~~~~ 332 (384)
T cd00249 259 WLIEKARRLFDLALA-LGWDPERGGLYY--SFLDDGGLL---EDDDKRWWPQTEALKAALALAGITGDERYWQWYQRAWA 332 (384)
T ss_pred HHHHHHHHHHHHHHH-hCcCccCCCEEE--eeECCCCCc---ccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 999999999998875 333 2 233221 011111111 123444455778888889999999999999999887
Q ss_pred -HhcccccccCCCCCCcEEEeccCCCCCCCCcCCCCCCCccCccccc
Q 007406 177 -LTNGVLSIQRGTEPGVMIYMLPLGRGDSKAKSYHGWGTRFSSFWCC 222 (605)
Q Consensus 177 -lyN~ila~q~~~~~g~~~Y~~pL~~g~~k~~~~~~~~~~~~~f~CC 222 (605)
+++..+... .++.+.+..+-+.-..+.. ..|.+.++.+-||
T Consensus 333 ~~~~~~~d~~---~G~w~~~~~~~g~~~~~~~--~~~~~~yH~~~a~ 374 (384)
T cd00249 333 YLWRHFIDPE---YGLWFGYLDADGKVLLTPK--GPAKTFYHVVRAL 374 (384)
T ss_pred HHHHhcCCCC---CCcceeeECCCCCCcCCCC--CCCCCCccHHhHH
Confidence 444444332 2345556554332111111 3466666766666
No 8
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=96.97 E-value=0.00045 Score=74.91 Aligned_cols=141 Identities=18% Similarity=0.199 Sum_probs=86.2
Q ss_pred ccchhHHHHHHHHHcCCHHHHHHHhhcccCCcchhhhhcCC-CCCcc----ccccccc-eeehhhhHHHHhCCc-----h
Q 007406 33 TGGMNDVLYRLYTITQDPKHLLLAHLFDKPCFLGLLAVQAD-DISGF----HANTHIP-VVIGSQMRYEVTGDP-----L 101 (605)
Q Consensus 33 ~GGmne~L~~LY~~TGd~~yL~lA~~F~~~~~~~~l~~~~D-~l~g~----HanthiP-~~~G~a~~Y~~TGd~-----~ 101 (605)
.|.|.++|++.|++|||++|.++......... . ...+ -.... -.+...- ..+++++.|++||++ .
T Consensus 38 ~a~~~~~~~d~~~~t~d~~y~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~DD~aw~~la~l~aye~t~~~~~~~~~ 113 (370)
T PF03663_consen 38 QAVMLSALIDYYRRTGDPTYNDLIQNALLNQR-G---PNYDSYNPSNGSGDRYYDDNAWWALALLRAYELTGDQPSDNPK 113 (370)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-H---HTTSSS--S------BHHHHHHHHHHHHHHHHHH--H-----H
T ss_pred HHHHHHHHHHHHHHhCcchHHHHHHHHHHHHh-c---ccccccccccccccCccChHHHHHHHHHHHHHhhCCCcchHHH
Confidence 67888999999999999999999886532100 0 0001 00000 0122222 346788999999999 9
Q ss_pred HHHHHHHHHHHhhccCeEeecCCCCCCCCCCCccccccCCCCccccchhhHHHHHHHHHHhccCCCchHHHHHHHHhccc
Q 007406 102 YKVTGTFFMDIVNASHGYATGGTSAGEFWSDPKRLASTLGTENEESCTTYNMLKVSRHLFRWTKEMVYADYYERALTNGV 181 (605)
Q Consensus 102 y~~aa~~fw~~v~~~h~y~TGG~g~~E~f~~p~~L~~~l~~~~~EtCas~nmlkl~~~Lf~~tgD~~YaD~~ERalyN~i 181 (605)
|++.|+.-|+.+.. ..-+...|++=+|..... + ....+--+|+.--.+.++-+|++.|+|.+|+|..++. ||=+
T Consensus 114 yL~~A~~i~~~~~~--~wd~~~cgGGi~W~~~~~--~-~~~~~Kna~sN~~~~~laarL~~~t~~~~Yl~~A~~~-~~W~ 187 (370)
T PF03663_consen 114 YLDLAKEIFDFLIS--GWDDTSCGGGIWWSIDDT--N-SGYDYKNAISNGPAAQLAARLYRITGDQTYLDWAKKI-YDWM 187 (370)
T ss_dssp HHHHHHHHHHHHHH--TB-SGG-GS-BEEET-------TEEEEEEHHHHHHHHHHHHHHHHHH--HHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHH--hcCCccCCCCcccccccc--C-CCCCcccccchHHHHHHHHHHHHhcCChHHHHHHHHH-HHHh
Confidence 99999999998863 333322233333432110 0 1245778899999999999999999999999999987 4444
Q ss_pred cc
Q 007406 182 LS 183 (605)
Q Consensus 182 la 183 (605)
..
T Consensus 188 ~~ 189 (370)
T PF03663_consen 188 RD 189 (370)
T ss_dssp HH
T ss_pred hc
Confidence 44
No 9
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=96.81 E-value=0.0024 Score=72.43 Aligned_cols=137 Identities=18% Similarity=0.150 Sum_probs=82.5
Q ss_pred cchhHHHHHHHHHcCCHHHHHHHhhcccCCcchhhhh-cCCCCCccccccccceeehhhhHHHHhCCchHHHHHHHHHHH
Q 007406 34 GGMNDVLYRLYTITQDPKHLLLAHLFDKPCFLGLLAV-QADDISGFHANTHIPVVIGSQMRYEVTGDPLYKVTGTFFMDI 112 (605)
Q Consensus 34 GGmne~L~~LY~~TGd~~yL~lA~~F~~~~~~~~l~~-~~D~l~g~HanthiP~~~G~a~~Y~~TGd~~y~~aa~~fw~~ 112 (605)
|-|.++|..-|+.|||++.|+.|.+|-+- +...+.. +.+.+.......|-=+.++++++|++|||++|++.|+.|.+.
T Consensus 128 ~~ll~gl~~~y~~tG~~~~L~v~~k~ad~-~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LY~~Tgd~~yL~lA~~f~~~ 206 (520)
T PF07944_consen 128 GKLLEGLIDYYEATGNERALDVATKLADW-VYRRLSRLGPEPGQKMGYPEHGGINEALVRLYEITGDERYLDLAEYFVDQ 206 (520)
T ss_pred hHHHHHHHHHHHHHCcHHHHHHHHHHHHH-HHHHhccCCHHHhhcccccccchHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34669999999999999999999998431 1000000 000100111122333447789999999999999999999986
Q ss_pred hhccCeEeecCCCCCCCCCCCccccccCCCCccccchh--hHHHHHHHHHHhccCCCchHHHHHHHHhccc
Q 007406 113 VNASHGYATGGTSAGEFWSDPKRLASTLGTENEESCTT--YNMLKVSRHLFRWTKEMVYADYYERALTNGV 181 (605)
Q Consensus 113 v~~~h~y~TGG~g~~E~f~~p~~L~~~l~~~~~EtCas--~nmlkl~~~Lf~~tgD~~YaD~~ERalyN~i 181 (605)
-...- .+ .+. ..+.++.. .....+..+. ..+.+-.-.+++.|||.+|.+..|+..-|-+
T Consensus 207 ~~~~~------~~-~~~--~~d~~~~~-~a~~~~~h~vr~~y~~~g~a~~y~~tgd~~~~~a~~~~w~~v~ 267 (520)
T PF07944_consen 207 RGFDP------YD-LAY--GQDHLPGR-HANTHIGHAVRAMYLYSGAADLYEETGDEEYLDAAENFWDNVV 267 (520)
T ss_pred hCCCC------Cc-hhh--cCccCCCc-cccceeeEEEEhhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 42111 11 111 11122221 1122222222 3455566789999999999999999877644
No 10
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.013 Score=67.24 Aligned_cols=143 Identities=21% Similarity=0.137 Sum_probs=89.0
Q ss_pred ccchhHHHHHHHHHcCCHHHHHHHhhcccCCcchhhhhcCCCCCccccc----------cccceeehhhhHHHHhCCchH
Q 007406 33 TGGMNDVLYRLYTITQDPKHLLLAHLFDKPCFLGLLAVQADDISGFHAN----------THIPVVIGSQMRYEVTGDPLY 102 (605)
Q Consensus 33 ~GGmne~L~~LY~~TGd~~yL~lA~~F~~~~~~~~l~~~~D~l~g~Han----------thiP~~~G~a~~Y~~TGd~~y 102 (605)
=|=|..+|++.++++||++|+++|++-..- +.+.+ ..|.|...+-. ++.-++.|.+.+|++|+|.+|
T Consensus 413 Nglmi~aLa~a~~~~~d~~~l~~A~~~~~f-i~~~l--~~~rl~~~~~~G~a~~~g~leDYA~~i~gll~lye~t~d~~y 489 (667)
T COG1331 413 NGLMIAALAEAGRVLGDPEYLEAAERAADF-ILDNL--YVDRLLRRYRGGEAAVAGLLEDYAFLILGLLALYEATGDLAY 489 (667)
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHH-HHHhh--cccchheeeecCcccccccchhHHHHHHHHHHHHHhhCcHHH
Confidence 356789999999999999999999986320 01111 11122222212 222235678899999999999
Q ss_pred HHHHHHHHHHhhccCeEeecCCCCCCCCCCCc---ccc---ccCCCCccccchhhHHHHHHHHHHhccCCCchHHHHHHH
Q 007406 103 KVTGTFFMDIVNASHGYATGGTSAGEFWSDPK---RLA---STLGTENEESCTTYNMLKVSRHLFRWTKEMVYADYYERA 176 (605)
Q Consensus 103 ~~aa~~fw~~v~~~h~y~TGG~g~~E~f~~p~---~L~---~~l~~~~~EtCas~nmlkl~~~Lf~~tgD~~YaD~~ERa 176 (605)
++.|+.+++.+..+--=..||. |..+. +|. ....+.-.++=+++... -.-+|-++|+|.+|.|..|++
T Consensus 490 L~~A~~L~~~~i~~f~d~~gGf-----~~t~~~~~~l~ir~~~~~D~a~~S~na~~~~-~L~~Ls~ltg~~~y~e~A~~~ 563 (667)
T COG1331 490 LEKAIELADEAIADFWDDEGGF-----YDTPSDSEDLLIRPKEPTDGATPSGNAVAAQ-ALLRLSLLTGDARYLEAAEDI 563 (667)
T ss_pred HHHHHHHHHHHHHHhcCCCCCc-----ccCCCcccccccCCCCCCCCCCCCHHHHHHH-HHHHHHhhcCchhHHHHHHHH
Confidence 9999999999874222233342 21111 121 11123334555554433 445678899999999999999
Q ss_pred H--hcccccc
Q 007406 177 L--TNGVLSI 184 (605)
Q Consensus 177 l--yN~ila~ 184 (605)
| |=+.+..
T Consensus 564 L~a~~~~~~~ 573 (667)
T COG1331 564 LQAFAGLAER 573 (667)
T ss_pred HHHHHHHHHh
Confidence 8 6555554
No 11
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=96.06 E-value=0.013 Score=62.42 Aligned_cols=139 Identities=19% Similarity=0.097 Sum_probs=79.4
Q ss_pred cchhHHHHHHHHHcCCHHHHHHHhhcccCCcchhhhhcCCCCCccccccccceeehhhhHHHHhCCchHHHHHHHHHH-H
Q 007406 34 GGMNDVLYRLYTITQDPKHLLLAHLFDKPCFLGLLAVQADDISGFHANTHIPVVIGSQMRYEVTGDPLYKVTGTFFMD-I 112 (605)
Q Consensus 34 GGmne~L~~LY~~TGd~~yL~lA~~F~~~~~~~~l~~~~D~l~g~HanthiP~~~G~a~~Y~~TGd~~y~~aa~~fw~-~ 112 (605)
|.+-..|.++|+.|||++|++.|+.+.+..+.. ... ..+.++| .+....+..|+.|||++|++++....+ +
T Consensus 28 G~~~~gl~~~~~~tgd~~~~~~a~~~~~~~~~~-~~~------~~~~d~~-~~g~~~~~~y~~t~d~~y~~~~~~~a~~~ 99 (336)
T PF07470_consen 28 GVFWYGLLEAYEYTGDERYLDYAERWADRFIEE-DGS------DYNLDDH-DIGFLLLDLYERTGDEKYKDAAIQAADWL 99 (336)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHT------TTSCCGT-THHHHHHHHHHHH-THHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhc-cCC------ccCCchh-hhHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 446677889999999999999999864322111 100 1122333 333335779999999999999999999 5
Q ss_pred hhccCeEeecCCCCCCCCCCCccccccCCCCccccchhhH-HHHHHHHHHhccCCCchHHHHHHHHhcccccccCCCCCC
Q 007406 113 VNASHGYATGGTSAGEFWSDPKRLASTLGTENEESCTTYN-MLKVSRHLFRWTKEMVYADYYERALTNGVLSIQRGTEPG 191 (605)
Q Consensus 113 v~~~h~y~TGG~g~~E~f~~p~~L~~~l~~~~~EtCas~n-mlkl~~~Lf~~tgD~~YaD~~ERalyN~ila~q~~~~~g 191 (605)
+.+..--..||+...+. ....--|-+.- .+-+.-++...|||++|.|...+-+-...--..++ +.|
T Consensus 100 l~~~~~~~~G~~~~~~~------------~~~~~wiD~~~M~~p~l~~~~~~tgd~~~~~~a~~q~~~~~~~~~d~-~tG 166 (336)
T PF07470_consen 100 LARRPRTSDGGFWHNRP------------YPNQVWIDGMYMNLPFLAWAGKLTGDPKYLDEAVRQFRLTRKYLYDP-ETG 166 (336)
T ss_dssp HHTSCBECTGCBECTTT------------STTEEETTHHHHHHHHHHHHHHHHTGHHHHHHHHHHHHHHHHHHB-T-TTS
T ss_pred HHhCCCCCCCccccCCC------------CCCceeeccccccHHHHHHHHHHHCCcHHHHHHHHHHHHHHHhccCC-CCC
Confidence 54333334566644111 00111122221 22344455788999999998877655444334444 445
Q ss_pred cE
Q 007406 192 VM 193 (605)
Q Consensus 192 ~~ 193 (605)
.+
T Consensus 167 l~ 168 (336)
T PF07470_consen 167 LY 168 (336)
T ss_dssp SB
T ss_pred ce
Confidence 44
No 12
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=95.61 E-value=0.025 Score=55.96 Aligned_cols=135 Identities=21% Similarity=0.131 Sum_probs=78.8
Q ss_pred cchhHHHHHHHHHcCCHHHHHHHhhcccCCcchhhhhc------CCCCCc--cc--------cccccceeehhhhHHHHh
Q 007406 34 GGMNDVLYRLYTITQDPKHLLLAHLFDKPCFLGLLAVQ------ADDISG--FH--------ANTHIPVVIGSQMRYEVT 97 (605)
Q Consensus 34 GGmne~L~~LY~~TGd~~yL~lA~~F~~~~~~~~l~~~------~D~l~g--~H--------anthiP~~~G~a~~Y~~T 97 (605)
|-...+|+|.|++|||++||+.|++..++-. -+..++ .+.... .+ -|.||=..+|.-+.+..|
T Consensus 33 G~a~s~l~RAy~~t~d~~Yl~aA~~al~~f~-~~~~~GG~~~~~~~~~~wyeEYp~~p~s~VLNGfiysL~GLyd~~~~~ 111 (189)
T PF06662_consen 33 GQAISVLARAYQLTGDEKYLDAAKKALNSFK-VPVEEGGVLATFKNKYPWYEEYPTTPPSYVLNGFIYSLIGLYDYYRLT 111 (189)
T ss_pred HHHHHHHHHHHHhHCCHHHHHHHHHHHHHhc-ChHhhCCeeEEecCCcEeEeecCCCCCCEEeehHHHHHHHHHHHHHhc
Confidence 4455899999999999999999999643211 111111 010000 01 133333346677778889
Q ss_pred CCchHHHHHHHHHHHhhcc-CeEeecCCCCCC--CCCCCccccccCCCCccccchhhHHHHHHHHHHhccCCCchHHHHH
Q 007406 98 GDPLYKVTGTFFMDIVNAS-HGYATGGTSAGE--FWSDPKRLASTLGTENEESCTTYNMLKVSRHLFRWTKEMVYADYYE 174 (605)
Q Consensus 98 Gd~~y~~aa~~fw~~v~~~-h~y~TGG~g~~E--~f~~p~~L~~~l~~~~~EtCas~nmlkl~~~Lf~~tgD~~YaD~~E 174 (605)
+++..++.-+...+.+-.. ..|-+|+.+--. |+.. +..++.-...|.. -.+.....|..+|+|+.+.+++|
T Consensus 112 ~~~~A~~lf~~Gl~sLk~~Lp~yD~G~wS~Ydl~h~~~-~~~~~~a~~~YH~-----lHi~qL~~L~~it~d~~f~~~a~ 185 (189)
T PF06662_consen 112 GDEEAKELFDKGLKSLKKMLPLYDTGSWSRYDLRHFTL-GNAPNIARWDYHR-----LHIQQLKWLYSITGDPIFKEYAE 185 (189)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhhcCCCchhhcccccc-ccCcCcCcchHHH-----HHHHHHHHHHHhcCCHHHHHHHH
Confidence 9987776666666665321 367787776421 2210 0111110112221 13456678999999999999999
Q ss_pred H
Q 007406 175 R 175 (605)
Q Consensus 175 R 175 (605)
|
T Consensus 186 r 186 (189)
T PF06662_consen 186 R 186 (189)
T ss_pred H
Confidence 7
No 13
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=94.22 E-value=0.23 Score=51.98 Aligned_cols=126 Identities=15% Similarity=0.008 Sum_probs=80.0
Q ss_pred cchhHHHHHHHHHcCCHHHHHHHhhcccC---Ccchhhhhc----CCCCCccccccccc--eeehhhhHHHHhCCchHHH
Q 007406 34 GGMNDVLYRLYTITQDPKHLLLAHLFDKP---CFLGLLAVQ----ADDISGFHANTHIP--VVIGSQMRYEVTGDPLYKV 104 (605)
Q Consensus 34 GGmne~L~~LY~~TGd~~yL~lA~~F~~~---~~~~~l~~~----~D~l~g~HanthiP--~~~G~a~~Y~~TGd~~y~~ 104 (605)
.|+..+|.+||+.|+|++|++.|+...+. .+.. ...+ ++.-....+--|-. ++......|++++|+.|++
T Consensus 142 aGi~~~L~~l~~~t~d~~~l~~A~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~wchG~aGi~~~l~~l~~~~~d~~~~~ 220 (321)
T cd04791 142 AGIALFLLRLYKATGDSRYLELAEEALDKELARAVV-DDGGLLQVDEGARLLPYLCSGSAGLGLLMLRLEAITGDKRWRD 220 (321)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhcc-CCCCceEcCCCCccCcccCCCcHHHHHHHHHHHHhcCCHHHHH
Confidence 56779999999999999999999877421 1110 0000 00000000011111 1122456789999999999
Q ss_pred HHHHHHHHhhccCeEeecCCCCCCCCCCCccccccCCCCccccchhhHHHHHHHHHHhccCCCchHHHHHHHHhcccccc
Q 007406 105 TGTFFMDIVNASHGYATGGTSAGEFWSDPKRLASTLGTENEESCTTYNMLKVSRHLFRWTKEMVYADYYERALTNGVLSI 184 (605)
Q Consensus 105 aa~~fw~~v~~~h~y~TGG~g~~E~f~~p~~L~~~l~~~~~EtCas~nmlkl~~~Lf~~tgD~~YaD~~ERalyN~ila~ 184 (605)
.++...+.+.+.. +. ..+=.|.+...+.+...+.+.++|.+|.+..++.. ..++..
T Consensus 221 ~a~~~~~~~~~~~------------~~-----------~~~lchG~~G~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~ 276 (321)
T cd04791 221 EADGIAHAALSSC------------YA-----------NPGLFSGTAGLGAHLNDLAAEGDNALYKAAAERLA-LYLIAT 276 (321)
T ss_pred HHHHHHHHHhhhh------------cc-----------CccccCCcHhHHHHHHhhcccccChHHHHHHHHHH-HHhccc
Confidence 9999888876431 11 12334556777778888899999999999999864 666654
No 14
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=93.75 E-value=0.084 Score=56.25 Aligned_cols=144 Identities=19% Similarity=0.070 Sum_probs=85.3
Q ss_pred hcccchhHHHHHHHHHcCCHHHHHHHhhcccCCcchhhhhcCCCCCccccccccceeehhhhHHHHhCCchHHHHHHHHH
Q 007406 31 EETGGMNDVLYRLYTITQDPKHLLLAHLFDKPCFLGLLAVQADDISGFHANTHIPVVIGSQMRYEVTGDPLYKVTGTFFM 110 (605)
Q Consensus 31 ~E~GGmne~L~~LY~~TGd~~yL~lA~~F~~~~~~~~l~~~~D~l~g~HanthiP~~~G~a~~Y~~TGd~~y~~aa~~fw 110 (605)
=|.|-.-..++++|+.|||++||+..+......+... .+.. ..-.||-...=..-+|+.|||++|++++.++=
T Consensus 36 we~GV~lyGv~~~~eAT~d~~yl~~l~~~~d~~i~~~------g~~~-~~id~i~~g~~L~~L~e~T~~~~Yl~~a~~~a 108 (357)
T COG4225 36 WEQGVFLYGVARAYEATGDAEYLDYLKTWFDEQIDEG------GLPP-RNIDHIAAGLTLLPLYEQTGDPRYLEAAIKLA 108 (357)
T ss_pred ccccchHHHHHHHHHHcCcHHHHHHHHHHHHhhhccC------CCCc-cchhhhccCceeeehhhhhCCHHHHHHHHHHH
Confidence 3567777999999999999999998876643222221 0111 11122222222567899999999999999999
Q ss_pred HHhhccCeEeecCCCCCCCCCCCccccccCCCCccccchhhHH-HHHHHHHHhccCCCchHHHHHHHHhcccccccCCCC
Q 007406 111 DIVNASHGYATGGTSAGEFWSDPKRLASTLGTENEESCTTYNM-LKVSRHLFRWTKEMVYADYYERALTNGVLSIQRGTE 189 (605)
Q Consensus 111 ~~v~~~h~y~TGG~g~~E~f~~p~~L~~~l~~~~~EtCas~nm-lkl~~~Lf~~tgD~~YaD~~ERalyN~ila~q~~~~ 189 (605)
+.+++ +. -| +.+-+|+... . ...==|.+--| .-+.-++=+.+++++|+|.+=+.+-=+.---++| +
T Consensus 109 ~~l~~-~~-Rt---~eG~f~H~~~-~------p~Q~W~DtL~Ma~~F~ak~g~~~~~~e~~d~~~~QF~~~~~~l~Dp-~ 175 (357)
T COG4225 109 SWLVH-EP-RT---KEGGFQHKVK-Y------PHQMWLDTLYMAGLFLAKYGQVTGRPEYFDEALYQFSLHEKYLRDP-E 175 (357)
T ss_pred HHHhh-Cc-cc---CCCccccccC-c------hhHhhhcchhhhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHccCC-C
Confidence 99874 43 22 2222332211 0 11111222111 1123345567899999999888776666555666 5
Q ss_pred CCcEE
Q 007406 190 PGVMI 194 (605)
Q Consensus 190 ~g~~~ 194 (605)
+|.|+
T Consensus 176 TGL~Y 180 (357)
T COG4225 176 TGLYY 180 (357)
T ss_pred cCceE
Confidence 55443
No 15
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.31 E-value=0.096 Score=58.23 Aligned_cols=122 Identities=17% Similarity=0.082 Sum_probs=74.7
Q ss_pred cchhHHHHHHHHHcCCHHHHHHHhhccc--CCcchhhhhcCCCCCccccccccceeehhhhHHHHhCCchHHHHHHHHHH
Q 007406 34 GGMNDVLYRLYTITQDPKHLLLAHLFDK--PCFLGLLAVQADDISGFHANTHIPVVIGSQMRYEVTGDPLYKVTGTFFMD 111 (605)
Q Consensus 34 GGmne~L~~LY~~TGd~~yL~lA~~F~~--~~~~~~l~~~~D~l~g~HanthiP~~~G~a~~Y~~TGd~~y~~aa~~fw~ 111 (605)
|=+.|+++.-|+.||+++.|+.+.+|-+ ...++++..+.--. -.|-=+-..++++|++|||++|++.|+.|-+
T Consensus 134 ghLieg~va~~qaTGkr~lldV~~rlADhi~tvfgp~~~q~~g~-----~gH~eielAl~~Ly~~Tg~~rYL~LA~~Fi~ 208 (589)
T COG3533 134 GHLIEGGVAAHQATGKRRLLDVVCRLADHIATVFGPEEDQVPGY-----CGHPEIELALAELYRLTGDQRYLDLARRFIH 208 (589)
T ss_pred HHHHhhhhHHHHhhCcchHHHHHHHHHHhhhhhcCccccccccc-----cCCCchhHHHHHHHHHhcChHHHHHHHHHHH
Confidence 3345889999999999999999999943 23444432111000 0111123447889999999999999999988
Q ss_pred HhhccCeEeecCCCCCCCCCCCccccccCCCCccccchhhHHHH---HHHHHHhccCCCchHHHHHHHHhcc
Q 007406 112 IVNASHGYATGGTSAGEFWSDPKRLASTLGTENEESCTTYNMLK---VSRHLFRWTKEMVYADYYERALTNG 180 (605)
Q Consensus 112 ~v~~~h~y~TGG~g~~E~f~~p~~L~~~l~~~~~EtCas~nmlk---l~~~Lf~~tgD~~YaD~~ERalyN~ 180 (605)
.-.. .-++-||- | + |.=-++--+. =.-.|++.+||..+.-.+|+..=|-
T Consensus 209 ~rg~-~P~~~rg~---e-------~---------~~gHAvr~iyl~~G~A~l~~~~gDds~r~~~~~lW~~~ 260 (589)
T COG3533 209 QRGV-EPLAQRGD---E-------L---------EGGHAVRQIYLYIGAADLAEETGDDSLRQAAEFLWQNV 260 (589)
T ss_pred Hhcc-ChhhcCch---h-------h---------hhhhHHHHHHHhhhHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 7421 11222222 1 0 1111111112 2356899999999888888766553
No 16
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=93.27 E-value=0.083 Score=56.39 Aligned_cols=158 Identities=17% Similarity=0.070 Sum_probs=85.7
Q ss_pred HHHHHHHHHcCCHHHHHHHhhcc---cCCcchhhhh------cCCCCCccccccccceeehhhhHHHHhCCchHHHHHHH
Q 007406 38 DVLYRLYTITQDPKHLLLAHLFD---KPCFLGLLAV------QADDISGFHANTHIPVVIGSQMRYEVTGDPLYKVTGTF 108 (605)
Q Consensus 38 e~L~~LY~~TGd~~yL~lA~~F~---~~~~~~~l~~------~~D~l~g~HanthiP~~~G~a~~Y~~TGd~~y~~aa~~ 108 (605)
.+|++ |..||+++++++|+... ...+.++... ..+.......|.|+-++...+.+|++|+|+.|++.++.
T Consensus 88 ~ala~-~~~tg~~~~~~~A~~~~~~l~~~~~d~~~g~~~~~~~~~~~~~r~~n~~mhl~eA~l~l~~~~~~~~~~~~a~~ 166 (346)
T PF07221_consen 88 LALAE-ARATGDPEALELAEQTLEFLERRFWDPEGGGYRESFDPDWSPPRGQNPHMHLLEAFLALYEATGDPRYLDRAEE 166 (346)
T ss_dssp HHHHH-HHCTT-TTHHHHHHHHHHHHHHHTEETTTTEE--EETTTSSCBEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHhCChhHHHHHHHHHHHHHHHhcccccCcceeccCCccccCCCCChhHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 67788 88999999999997652 1222222111 11111112357776667788899999999999999999
Q ss_pred HHHHhhccCeEeecCCCCCCCCCCCccc-cccC-C----CCccccchhhHHHHHHHHHH--hccCCCchHHHHHHHHhcc
Q 007406 109 FMDIVNASHGYATGGTSAGEFWSDPKRL-ASTL-G----TENEESCTTYNMLKVSRHLF--RWTKEMVYADYYERALTNG 180 (605)
Q Consensus 109 fw~~v~~~h~y~TGG~g~~E~f~~p~~L-~~~l-~----~~~~EtCas~nmlkl~~~Lf--~~tgD~~YaD~~ERalyN~ 180 (605)
..+.+.. +.+....--..|+|..+-.. ++.. . ....|-==..+++.+.-++- ...++..+.+..+ .|++.
T Consensus 167 l~~~~~~-~f~~~~~g~~~E~f~~dw~~~~~~~~~d~~~~~~~~pGH~~E~~wll~~~~~~~~~~~~~~~~~a~-~l~~~ 244 (346)
T PF07221_consen 167 LLDLFLD-RFADPESGALPEFFDRDWNPLPDGSGDDTFRGRIVEPGHDFEWAWLLLEAARLTGRGDPDWLERAR-RLFDF 244 (346)
T ss_dssp HHHHHHT-TCHHCCTTEETSEEETTSEBETTTTTTHSTTTSSB-HHHHHHHHHHHHHHHHHCHCT-HTHHHHHH-HHHHH
T ss_pred HHHHHHH-HHHHhccCeeeeeeccccccccccccccccccCccCCchhHHHHHHHHHHHHhcccccHHHHHHHH-HHHHH
Confidence 9999875 44433222235665433221 1100 0 00122222233444444433 3346777775554 34555
Q ss_pred ccc-ccCCCCCCcEEEeccC
Q 007406 181 VLS-IQRGTEPGVMIYMLPL 199 (605)
Q Consensus 181 ila-~q~~~~~g~~~Y~~pL 199 (605)
.+. +.+. +.|.++|....
T Consensus 245 ~~~~G~d~-~~gG~~~~~d~ 263 (346)
T PF07221_consen 245 ALEHGWDR-EGGGLFYSVDR 263 (346)
T ss_dssp HHHHHBST-TTSSB-SEEET
T ss_pred HHHheEec-CCCeEEEEEeC
Confidence 554 5554 56666676544
No 17
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=93.00 E-value=0.58 Score=48.95 Aligned_cols=133 Identities=17% Similarity=0.024 Sum_probs=75.6
Q ss_pred cchhHHHHHHHHHcCCHHHHHHHhhcccCCcchhhhhcCCCCCcc-cc-----ccccc--eeehhhhHHHHhCCchHHHH
Q 007406 34 GGMNDVLYRLYTITQDPKHLLLAHLFDKPCFLGLLAVQADDISGF-HA-----NTHIP--VVIGSQMRYEVTGDPLYKVT 105 (605)
Q Consensus 34 GGmne~L~~LY~~TGd~~yL~lA~~F~~~~~~~~l~~~~D~l~g~-Ha-----nthiP--~~~G~a~~Y~~TGd~~y~~a 105 (605)
.|+.-+|..||+. +|++|++.|+..-+.- ........+..... +. -.|-- ++...+..|+.|+|++|++.
T Consensus 86 aG~~~~ll~l~~~-~~~~~l~~a~~~~~~l-~~~~~~~~~~~~~~~~~~~~~G~~hG~aGi~~~L~~l~~~t~d~~~l~~ 163 (321)
T cd04791 86 AGIGLALLYFART-GDPALLEAAAKIAELL-AEALERGDPALLWPDFDRVDHGLLHGWAGIALFLLRLYKATGDSRYLEL 163 (321)
T ss_pred HHHHHHHHHHHhc-CChHHHHHHHHHHHHH-HHHhhccccccccccCCCCCCccccCcHHHHHHHHHHHHHHCCHHHHHH
Confidence 4566889999999 9999999998764310 00000010100000 00 00110 12235677999999999999
Q ss_pred HHHHHHHhhccCeEeecCCCCCCCCCCCccccccCCCCccccchh-hHHHHHHHHHHhccCCCchHHHHHHHHh
Q 007406 106 GTFFMDIVNASHGYATGGTSAGEFWSDPKRLASTLGTENEESCTT-YNMLKVSRHLFRWTKEMVYADYYERALT 178 (605)
Q Consensus 106 a~~fw~~v~~~h~y~TGG~g~~E~f~~p~~L~~~l~~~~~EtCas-~nmlkl~~~Lf~~tgD~~YaD~~ERaly 178 (605)
++...+.+.++..-..+|.- |.... . ....-.|.- ..+.....+|++.++|.+|.+..|+++-
T Consensus 164 A~~~~~~~~~~~~~~~~g~~----~~~~~---~---~~~~~wchG~aGi~~~l~~l~~~~~d~~~~~~a~~~~~ 227 (321)
T cd04791 164 AEEALDKELARAVVDDGGLL----QVDEG---A---RLLPYLCSGSAGLGLLMLRLEAITGDKRWRDEADGIAH 227 (321)
T ss_pred HHHHHHHHHHhhccCCCCce----EcCCC---C---ccCcccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999987653322222221 11100 0 011124443 4455555678899999999999988743
No 18
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=84.02 E-value=0.88 Score=48.54 Aligned_cols=130 Identities=17% Similarity=0.103 Sum_probs=72.2
Q ss_pred hhHHHHHHHHHcCCHHHHHHHhhcc---cCCcchh--------hhhcCCCCC-ccccccccceeehhhhHHHHhCCchHH
Q 007406 36 MNDVLYRLYTITQDPKHLLLAHLFD---KPCFLGL--------LAVQADDIS-GFHANTHIPVVIGSQMRYEVTGDPLYK 103 (605)
Q Consensus 36 mne~L~~LY~~TGd~~yL~lA~~F~---~~~~~~~--------l~~~~D~l~-g~HanthiP~~~G~a~~Y~~TGd~~y~ 103 (605)
|.-++..+|+ .|++.||++|+.-. ...+.++ +..+. .+. ..+..++.=++.|++. |.+||++.++
T Consensus 26 ~~~~fa~a~~-~g~~~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~~-~~~~~~~~Y~~af~l~ala~-~~~tg~~~~~ 102 (346)
T PF07221_consen 26 QLYTFARAYR-LGRPEYLELAEHGFDFLRKHFRDPEYGGWYRSLDDGG-PLDPQKDLYDQAFALLALAE-ARATGDPEAL 102 (346)
T ss_dssp HHHHHHHHHH-TTSHHHHHHHHHHHHHHHHTTBTTTTSSBSSEEETTE-EEE--EEHHHHHHHHHHHHH-HHCTT-TTHH
T ss_pred HHHHHHHHHh-cCchhHHHHHHHHHHHHHHhcccCCCCCEEEEeCCCC-CCccccchHHHHHHHHHHHH-HHHhCChhHH
Confidence 4578999999 89999999998742 1222211 11111 110 0122222223567777 8999999999
Q ss_pred HHHHHHHHHhhccCeEee-cCCCCCCCCCCCccccccCCCCccccchhhHHHHHHHHHHhccCCCchHHHHHHHH
Q 007406 104 VTGTFFMDIVNASHGYAT-GGTSAGEFWSDPKRLASTLGTENEESCTTYNMLKVSRHLFRWTKEMVYADYYERAL 177 (605)
Q Consensus 104 ~aa~~fw~~v~~~h~y~T-GG~g~~E~f~~p~~L~~~l~~~~~EtCas~nmlkl~~~Lf~~tgD~~YaD~~ERal 177 (605)
+.|+..++.+.++-.-.- ||.. |.+..+.... .. .-.-.-++.-.-.|++.++|++|.+.+++.+
T Consensus 103 ~~A~~~~~~l~~~~~d~~~g~~~--~~~~~~~~~~-----r~--~n~~mhl~eA~l~l~~~~~~~~~~~~a~~l~ 168 (346)
T PF07221_consen 103 ELAEQTLEFLERRFWDPEGGGYR--ESFDPDWSPP-----RG--QNPHMHLLEAFLALYEATGDPRYLDRAEELL 168 (346)
T ss_dssp HHHHHHHHHHHHHTEETTTTEE----EETTTSSCB-----EE--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccCcce--eccCCccccC-----CC--CChhHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 999999999875333332 3322 2222111111 00 0000112222346888999999999998764
No 19
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=80.56 E-value=5.5 Score=42.35 Aligned_cols=132 Identities=20% Similarity=0.124 Sum_probs=72.0
Q ss_pred hh-HHHHHHHHHcCCHHHHHHHhhccc---CCcchhhhhcCCCCCc--cccccccce---------------eehhhhHH
Q 007406 36 MN-DVLYRLYTITQDPKHLLLAHLFDK---PCFLGLLAVQADDISG--FHANTHIPV---------------VIGSQMRY 94 (605)
Q Consensus 36 mn-e~L~~LY~~TGd~~yL~lA~~F~~---~~~~~~l~~~~D~l~g--~HanthiP~---------------~~G~a~~Y 94 (605)
|+ ..|++++++|||++|++.|..-.+ ..+++ .-.| .|..++... +.|+++.|
T Consensus 128 M~~p~l~~~~~~tgd~~~~~~a~~q~~~~~~~~~d-------~~tGl~~h~~~~~~~~~~s~~~WsRG~gW~~~Gl~~~l 200 (336)
T PF07470_consen 128 MNLPFLAWAGKLTGDPKYLDEAVRQFRLTRKYLYD-------PETGLYYHGYTYQGYADWSDSFWSRGNGWAIYGLAEVL 200 (336)
T ss_dssp HHHHHHHHHHHHHTGHHHHHHHHHHHHHHHHHHB--------TTTSSBESEEETTSSSTTST--BHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHCCcHHHHHHHHHHHHHHHhccC-------CCCCceeeccCCCCCcCcccccCcchhhHHHHHHHHHH
Confidence 55 889999999999999998876521 11221 1122 244333321 35788888
Q ss_pred HHhCC-----chHHHHHHHHHHHhhccCeEeecCCCCCCCCCCCccccccCCCCccccchhhHHHHHH-HHH-HhccCCC
Q 007406 95 EVTGD-----PLYKVTGTFFMDIVNASHGYATGGTSAGEFWSDPKRLASTLGTENEESCTTYNMLKVS-RHL-FRWTKEM 167 (605)
Q Consensus 95 ~~TGd-----~~y~~aa~~fw~~v~~~h~y~TGG~g~~E~f~~p~~L~~~l~~~~~EtCas~nmlkl~-~~L-f~~tgD~ 167 (605)
+...+ +.+++.++.+.+.+.+..- ..|..... +..| . +..+.||.+|.=+..-. +-+ ..+..+.
T Consensus 201 ~~lp~~~~~~~~~~~~~~~~~~~l~~~q~-~~G~w~~~--~~~~----~--~~~~~etSatA~~a~~l~~gi~~g~~d~~ 271 (336)
T PF07470_consen 201 EYLPEDHPERDELLEIAKKLADALARYQD-EDGLWYQD--LDDP----D--PGNYRETSATAMFAYGLLRGIRLGLLDPE 271 (336)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHTTST-TTSBEBSB--TTTT----T--TTS-BEHHHHHHHHHHHHHHHHTTSSTHH
T ss_pred HHhcchhhhHHHHHHHHHHHHHHHHhcCC-CCCCccee--cCCC----C--CCCcccHHHHHHHHHHHHHHHHcCCCccH
Confidence 88644 5666777777766654322 23322111 1111 1 23677887774222111 112 2233467
Q ss_pred chHHHHHHHHhcccccc
Q 007406 168 VYADYYERALTNGVLSI 184 (605)
Q Consensus 168 ~YaD~~ERalyN~ila~ 184 (605)
+|.+..||++ ++++..
T Consensus 272 ~y~~~a~~a~-~~l~~~ 287 (336)
T PF07470_consen 272 EYRPAAEKAL-EALLSN 287 (336)
T ss_dssp HHHHHHHHHH-HHHHHC
T ss_pred HHHHHHHHHH-HHHHhC
Confidence 8999998864 555555
No 20
>PF15095 IL33: Interleukin 33; PDB: 2KLL_A.
Probab=77.97 E-value=30 Score=35.16 Aligned_cols=90 Identities=20% Similarity=0.225 Sum_probs=49.1
Q ss_pred cccccEEEEEEecCCCCccccccccCCCceee--eccCCCCCceEEEecCceeEEEeCCCCCCCCceEEEeecCCCCCCe
Q 007406 440 DAALHATFRLIMKEESSSEVSSLKDVIGKSVM--LEPFDFPGMLVVQQGTDGELVVSDSPKEGDSSVFRLVAGLDGKDET 517 (605)
Q Consensus 440 ~~~~~~~fr~~~~~~~~~~~~~p~~~~g~~v~--lepfd~Pg~~v~~~~~~~~l~v~~~~~~~~~s~f~~vpgl~g~~~~ 517 (605)
..-=-..||.......|+.-+.- .+|..+| |.|-....-.+--...+..+-+.---...+|..|.+.--- ...+
T Consensus 155 qEKDKVLlryYeSq~pS~esgdg--vDGk~LMVnlSPtkdkDf~LHAN~keHSVeLqKcE~~lpdQaff~lh~~--ss~~ 230 (268)
T PF15095_consen 155 QEKDKVLLRYYESQCPSSESGDG--VDGKKLMVNLSPTKDKDFLLHANNKEHSVELQKCENPLPDQAFFVLHKK--SSEC 230 (268)
T ss_dssp -----EEEEEEE----TTTS------S---EEEEEESS--SSEEEEEETTTTEEEEEE--SS--TTT-EEEEE---SSS-
T ss_pred cccceEEEEeccCCCCcccCCCC--ccceEEEEEcCCccchheEEecCCccceeeeeecCCCCCcceeEEEecC--CCce
Confidence 33445678877554433233333 5777776 9999888887777777777776544556788888887443 3589
Q ss_pred eEEEeccCCCeEEEec
Q 007406 518 ISLEAVNQNGCFVYSG 533 (605)
Q Consensus 518 vsles~~~pg~~~~~~ 533 (605)
||||-.|+||.|+-+-
T Consensus 231 vsfeck~~pg~~igvk 246 (268)
T PF15095_consen 231 VSFECKNNPGVFIGVK 246 (268)
T ss_dssp EEEEESSSTTEEEEES
T ss_pred eEEEecCCCceEEeee
Confidence 9999999999999764
No 21
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=77.45 E-value=8.3 Score=46.27 Aligned_cols=127 Identities=17% Similarity=0.100 Sum_probs=73.6
Q ss_pred cchhHHHHHHHHHcCCHHHHHHHhhcccCCcchhhhhcCCCCCccccccccc-eeehhhhHHHHhCCchHHHHHHHHHHH
Q 007406 34 GGMNDVLYRLYTITQDPKHLLLAHLFDKPCFLGLLAVQADDISGFHANTHIP-VVIGSQMRYEVTGDPLYKVTGTFFMDI 112 (605)
Q Consensus 34 GGmne~L~~LY~~TGd~~yL~lA~~F~~~~~~~~l~~~~D~l~g~HanthiP-~~~G~a~~Y~~TGd~~y~~aa~~fw~~ 112 (605)
+|+.-+|..||+.|++++|++.|+...+.- ..... .+...+ .-.-.. ++......|+.++++.++++++..-+.
T Consensus 544 aGi~~~L~~l~~~~~~~~~~~~a~~~~~~l--~~~~~-~~~~~D--~~~G~aGii~~Ll~l~~~~~~~~~l~~a~~~~~~ 618 (825)
T cd04792 544 GGILYALTHLGKLLKDDRLLNLAKEILDLI--DELIE-KDEKLD--FISGAAGLILVLLSLYELFLSERFLDLALKCGDH 618 (825)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHhhc-cccCCC--EeeecHHHHHHHHHHHhccCChHHHHHHHHHHHH
Confidence 566688999999999999999998764310 00000 000000 000011 223356779999999999988887777
Q ss_pred hhccCeEeecCCCCCCCCCCCccccccCCCCccccc-hhhHHHHHHHHHHhccCCCchHHHHHHHH
Q 007406 113 VNASHGYATGGTSAGEFWSDPKRLASTLGTENEESC-TTYNMLKVSRHLFRWTKEMVYADYYERAL 177 (605)
Q Consensus 113 v~~~h~y~TGG~g~~E~f~~p~~L~~~l~~~~~EtC-as~nmlkl~~~Lf~~tgD~~YaD~~ERal 177 (605)
+.......-++....+ . ....--| .+.+.+....+|++.++|.+|.+.+++++
T Consensus 619 l~~~~~~~~~~~~~~~---------~---~~~~G~aHG~sGi~~aL~~l~~~~~d~~~~~~a~~~l 672 (825)
T cd04792 619 LLENASNEDGGIGPAE---------Q---PNLTGFAHGASGIAWALLRLYKVTGDSRYLKLAHKAL 672 (825)
T ss_pred HHHhhhhccCCccccc---------c---cccccccccHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 6543222212211000 0 0111112 23455666777888899999999988776
No 22
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=76.42 E-value=6.5 Score=44.07 Aligned_cols=144 Identities=19% Similarity=0.160 Sum_probs=82.3
Q ss_pred hhcccchhHHHHHHHHHcCCHHHHHHHhhcccCCcchhhhhcCCCCCcc---ccc--cccc----eeeh---------hh
Q 007406 30 NEETGGMNDVLYRLYTITQDPKHLLLAHLFDKPCFLGLLAVQADDISGF---HAN--THIP----VVIG---------SQ 91 (605)
Q Consensus 30 ~~E~GGmne~L~~LY~~TGd~~yL~lA~~F~~~~~~~~l~~~~D~l~g~---Han--thiP----~~~G---------~a 91 (605)
-.|.|.+..-+.+|.++|||++|.+.|++..+. ++... .+-...|+ +-+ +-.+ +-+| +.
T Consensus 143 la~~gs~~lEf~~LS~lTgd~kY~~~a~~~~~~--l~~~~-~~~~~~gL~p~~id~~~g~~~~~~~~~Ga~~DS~YEYLl 219 (452)
T PF01532_consen 143 LAEAGSLQLEFTRLSQLTGDPKYFDAADRIYDA--LWRSQ-NRSKIPGLFPNFIDPSTGKWTSSSISLGAGGDSFYEYLL 219 (452)
T ss_dssp HHHHCSSHHHHHHHHHHHS-THHHHHHHHHHHH--HHCCC-CCHSBTTB-BSEEETTTS-BSSTEE-SSTTTHHHHHHHH
T ss_pred ccccccceechhHHHHHhhccHHHHHHHHHHHH--HHHhh-hccCCcccCcceecCCcCcccccccccCCCcchHHHhhh
Confidence 367888888899999999999999999987431 11000 11111222 111 1111 1122 45
Q ss_pred hHHHHhC--CchHHHHHHHHHHHhhccCeEeecCCCCCC--CCCCCcc--cc-ccCCCCccccchhhHHHHHHHHHHhcc
Q 007406 92 MRYEVTG--DPLYKVTGTFFMDIVNASHGYATGGTSAGE--FWSDPKR--LA-STLGTENEESCTTYNMLKVSRHLFRWT 164 (605)
Q Consensus 92 ~~Y~~TG--d~~y~~aa~~fw~~v~~~h~y~TGG~g~~E--~f~~p~~--L~-~~l~~~~~EtCas~nmlkl~~~Lf~~t 164 (605)
+.|.++| |+.|++.=....+.+.+ |+...-..-..+ .|-.... .. ...+....=+|-.-+|+.+..+++
T Consensus 220 K~~lL~g~~d~~~~~~~~~a~~~i~~-~Ll~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~hLsCF~pG~l~Lg~~~~--- 295 (452)
T PF01532_consen 220 KMYLLLGGTDEQYRDMYDEAVDAIKK-HLLFRPSTPGDYDLLFLGEYSTGGGGRLSPKMDHLSCFLPGMLALGAKLF--- 295 (452)
T ss_dssp HHHHHTTTTTHHHHHHHHHHHHHHHH-HTEEEBTTTT--T-EEE-EEETTTTTEEESEEECGGGGHHHHHHHHHHTT---
T ss_pred hhhhhcCccchHHHHHHHHHHHHHHH-HhhccCCCCCccceeEeeeeecccCccccccccchhhcchhHHHHhhccc---
Confidence 6688999 88998888888888864 544432221111 1111100 00 011355778999999999999998
Q ss_pred CCCchHHHHHHHHhcc
Q 007406 165 KEMVYADYYERALTNG 180 (605)
Q Consensus 165 gD~~YaD~~ERalyN~ 180 (605)
++.++.+..++.....
T Consensus 296 ~~~~~~~~A~~l~~~C 311 (452)
T PF01532_consen 296 NDEGDLELAEELTETC 311 (452)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHH
Confidence 3355555555544333
No 23
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=73.83 E-value=8.2 Score=45.04 Aligned_cols=80 Identities=18% Similarity=0.010 Sum_probs=47.1
Q ss_pred ccchhHHHHHHHHHcCCHHHHHHHhhcccC---Ccchhh-------hhcCCCCCcc--ccccccce-----eehhhhHHH
Q 007406 33 TGGMNDVLYRLYTITQDPKHLLLAHLFDKP---CFLGLL-------AVQADDISGF--HANTHIPV-----VIGSQMRYE 95 (605)
Q Consensus 33 ~GGmne~L~~LY~~TGd~~yL~lA~~F~~~---~~~~~l-------~~~~D~l~g~--HanthiP~-----~~G~a~~Y~ 95 (605)
+.-+..+|..||++|+|.+||+.|..+-+. .|+++. ....+.+-.. -.-.-+|- +....++-.
T Consensus 470 YA~~i~gll~lye~t~d~~yL~~A~~L~~~~i~~f~d~~gGf~~t~~~~~~l~ir~~~~~D~a~~S~na~~~~~L~~Ls~ 549 (667)
T COG1331 470 YAFLILGLLALYEATGDLAYLEKAIELADEAIADFWDDEGGFYDTPSDSEDLLIRPKEPTDGATPSGNAVAAQALLRLSL 549 (667)
T ss_pred HHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhcCCCCCcccCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHHHh
Confidence 334558999999999999999999988542 122222 1001111000 00111221 233556689
Q ss_pred HhCCchHHHHHHHHHHH
Q 007406 96 VTGDPLYKVTGTFFMDI 112 (605)
Q Consensus 96 ~TGd~~y~~aa~~fw~~ 112 (605)
+|||..|.+.|+...+.
T Consensus 550 ltg~~~y~e~A~~~L~a 566 (667)
T COG1331 550 LTGDARYLEAAEDILQA 566 (667)
T ss_pred hcCchhHHHHHHHHHHH
Confidence 99999999888765544
No 24
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=71.04 E-value=26 Score=40.16 Aligned_cols=80 Identities=25% Similarity=0.179 Sum_probs=46.0
Q ss_pred HHHHHHHHHcCCHHHHHHHhhccc---CCcchhhhhc------CCCC-Cccc-ccccccee-eh-----hhhHHHHhCCc
Q 007406 38 DVLYRLYTITQDPKHLLLAHLFDK---PCFLGLLAVQ------ADDI-SGFH-ANTHIPVV-IG-----SQMRYEVTGDP 100 (605)
Q Consensus 38 e~L~~LY~~TGd~~yL~lA~~F~~---~~~~~~l~~~------~D~l-~g~H-anthiP~~-~G-----~a~~Y~~TGd~ 100 (605)
-.|.-.|.+|||+.||+.|.-+-+ +.|..+-... .... ...+ +.....++ +| ...+.++|||+
T Consensus 162 GGLLSAy~Ls~d~~lL~kA~dLgd~Ll~AFdTptgiP~~~vnl~~g~~~~~~~~~~~~~lAe~gSl~LEF~~LS~lTGd~ 241 (522)
T PTZ00470 162 GGLLSAYDLTGDEMYLEKAREIADRLLPAFNEDTGFPASEINLATGRKSYPGWAGGCSILSEVGTLQLEFNYLSEITGDP 241 (522)
T ss_pred hHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcCCCCCCcceeecccCCCCCcccCCCccchhhhhhHHHHHHHHHHhhCCH
Confidence 446678999999999999987632 2221110000 0000 0000 01111111 33 34568999999
Q ss_pred hHHHHHHHHHHHhhccC
Q 007406 101 LYKVTGTFFMDIVNASH 117 (605)
Q Consensus 101 ~y~~aa~~fw~~v~~~h 117 (605)
+|.+++++.++.+.+.+
T Consensus 242 kY~~~a~~i~~~l~~~~ 258 (522)
T PTZ00470 242 KYAEYVDKVMDALFSMK 258 (522)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99999999988886543
No 25
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=65.62 E-value=20 Score=43.04 Aligned_cols=119 Identities=14% Similarity=0.051 Sum_probs=71.2
Q ss_pred ccchhHHHHHHHHHcCCHHHHHHHhhcccCCcchhhhhcCCCCCccccccccceeeh-------hhhHHHHhCCchHHHH
Q 007406 33 TGGMNDVLYRLYTITQDPKHLLLAHLFDKPCFLGLLAVQADDISGFHANTHIPVVIG-------SQMRYEVTGDPLYKVT 105 (605)
Q Consensus 33 ~GGmne~L~~LY~~TGd~~yL~lA~~F~~~~~~~~l~~~~D~l~g~HanthiP~~~G-------~a~~Y~~TGd~~y~~a 105 (605)
.+|+.-.|..||+.|+|++|.+.|+...+.- ...+..... + ...+-.+.| ...+|+.++++.|++.
T Consensus 493 ~aGIal~l~~l~~~t~~~~~~~~a~~~l~~l-~~~~~~~~~-----~-~~~~gl~~G~aGi~~~L~~l~~~~~~~~~~~~ 565 (825)
T cd04792 493 SAGIALFLAYLGQLTGDERYTRLARKILDSL-VKSLSELKT-----D-DTGIGAFSGLGGILYALTHLGKLLKDDRLLNL 565 (825)
T ss_pred hHHHHHHHHHHHHHhCChHHHHHHHHHHHHH-HHHHhcccc-----c-ccCceeEechhHHHHHHHHHHHHcCCHHHHHH
Confidence 4678899999999999999999998764321 111111000 0 011223333 3466889999999999
Q ss_pred HHHHHHHhhccCeEeecCCCCCCCCCCCccccccCCCCccccchhhHHHHHHHHHHhccCCCchHHHHHHHHhc
Q 007406 106 GTFFMDIVNASHGYATGGTSAGEFWSDPKRLASTLGTENEESCTTYNMLKVSRHLFRWTKEMVYADYYERALTN 179 (605)
Q Consensus 106 a~~fw~~v~~~h~y~TGG~g~~E~f~~p~~L~~~l~~~~~EtCas~nmlkl~~~Lf~~tgD~~YaD~~ERalyN 179 (605)
++...+.+... .- ..+. .++ . ...-+.+...-++++.+++.+|.+.+++.+=.
T Consensus 566 a~~~~~~l~~~-~~------~~~~----~D~--------~--~G~aGii~~Ll~l~~~~~~~~~l~~a~~~~~~ 618 (825)
T cd04792 566 AKEILDLIDEL-IE------KDEK----LDF--------I--SGAAGLILVLLSLYELFLSERFLDLALKCGDH 618 (825)
T ss_pred HHHHHHHHHHh-hc------cccC----CCE--------e--eecHHHHHHHHHHHhccCChHHHHHHHHHHHH
Confidence 98887776431 10 0000 011 1 11223344455788889999999988766544
No 26
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=64.72 E-value=12 Score=39.51 Aligned_cols=89 Identities=16% Similarity=0.154 Sum_probs=57.4
Q ss_pred hhhHHHHhCCchHHHHHHHHHHHhhccCeEeecCCCCCCCCCCCccccccCCCCccccchhhHHHHHHHHHHhccCCC--
Q 007406 90 SQMRYEVTGDPLYKVTGTFFMDIVNASHGYATGGTSAGEFWSDPKRLASTLGTENEESCTTYNMLKVSRHLFRWTKEM-- 167 (605)
Q Consensus 90 ~a~~Y~~TGd~~y~~aa~~fw~~v~~~h~y~TGG~g~~E~f~~p~~L~~~l~~~~~EtCas~nmlkl~~~Lf~~tgD~-- 167 (605)
+|+.|..|+|++|++++.+..+.+. .-.|..||.-.. |-......++++ ---=+.+|.|.+.+....-.++-
T Consensus 48 La~~y~~t~d~~y~~A~~kgl~ylL-~aQypnGGWPQ~--yP~~~~Y~~~IT---fNDdam~~vl~lL~~v~~~~~~~~~ 121 (289)
T PF09492_consen 48 LARVYQATKDPRYREAFLKGLDYLL-KAQYPNGGWPQF--YPLRGGYHDHIT---FNDDAMVNVLELLRDVAEGKGDFAF 121 (289)
T ss_dssp HHHHHHHCG-HHHHHHHHHHHHHHH-HHS-TTS--BSE--CS--SGGGGSEE----GGGHHHHHHHHHHHHHCT-TTSTT
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHH-HhhCCCCCCCcc--CCCCCCCCCceE---EccHHHHHHHHHHHHHHhhcCCccc
Confidence 7889999999999999999999998 477999998752 222111122111 11124578888888888888888
Q ss_pred -------chHHHHHHHHhccccccc
Q 007406 168 -------VYADYYERALTNGVLSIQ 185 (605)
Q Consensus 168 -------~YaD~~ERalyN~ila~q 185 (605)
++.+.++|.+- .||..|
T Consensus 122 v~~~~~~r~~~A~~kgi~-ciL~tQ 145 (289)
T PF09492_consen 122 VDESLRARARAAVDKGID-CILKTQ 145 (289)
T ss_dssp S-HHHHHHHHHHHHHHHH-HHHHHS
T ss_pred cCHHHHHHHHHHHHHHHH-HHHHHH
Confidence 77777777653 455544
No 27
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=62.33 E-value=45 Score=29.48 Aligned_cols=53 Identities=13% Similarity=0.295 Sum_probs=31.1
Q ss_pred EEECCeeecCCCCCCEEEEEeeeCCCCEEEEEec-ceeEEE--ecCCCccccCCeEEEeecceeEe
Q 007406 314 ATLNGQSLSLPAPGNFISVTQRWSSTDKLTIQLP-INLRTE--AIKDDRPAYASIQAILYGPYLLA 376 (605)
Q Consensus 314 v~VNG~~~~~~~~ggy~~I~R~W~~GD~V~L~lp-m~lr~~--~~~d~~~~~~~~vAv~~GPlVlA 376 (605)
++|||+... ..++..+.++ +||.|+|+-. -..|+. ...+-++ --+.|||+|+-
T Consensus 31 ~~v~~~~~~-~~~~~~~~l~----~g~~i~~~a~~~~a~~lll~GePl~E-----pi~~~GpFVmn 86 (104)
T PF05726_consen 31 VEVGGEEDP-LEAGQLVVLE----DGDEIELTAGEEGARFLLLGGEPLNE-----PIVQYGPFVMN 86 (104)
T ss_dssp EEETTTTEE-EETTEEEEE-----SECEEEEEESSSSEEEEEEEE----S-------EEETTEEES
T ss_pred EEECCCcce-ECCCcEEEEC----CCceEEEEECCCCcEEEEEEccCCCC-----CEEEECCcccC
Confidence 556666411 1256677776 8999999998 666663 2221111 24789999986
No 28
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=59.51 E-value=21 Score=40.85 Aligned_cols=94 Identities=22% Similarity=0.213 Sum_probs=54.8
Q ss_pred cccceeehhhhHHHHhCCchHHHHHHHHHHHhhccCeEeecCCCCCCCCCCCccccccCCCCccccchh-hHHHHH-HHH
Q 007406 82 THIPVVIGSQMRYEVTGDPLYKVTGTFFMDIVNASHGYATGGTSAGEFWSDPKRLASTLGTENEESCTT-YNMLKV-SRH 159 (605)
Q Consensus 82 thiP~~~G~a~~Y~~TGd~~y~~aa~~fw~~v~~~h~y~TGG~g~~E~f~~p~~L~~~l~~~~~EtCas-~nmlkl-~~~ 159 (605)
+.|-++=|+.-.|.+|||+.|++.|...=+.+..---..||---..-.+... ....-......+|.+ ...|.+ -.+
T Consensus 156 ttIR~LGGLLSAy~Ls~d~~lL~kA~dLgd~Ll~AFdTptgiP~~~vnl~~g--~~~~~~~~~~~~~lAe~gSl~LEF~~ 233 (522)
T PTZ00470 156 TTIRVLGGLLSAYDLTGDEMYLEKAREIADRLLPAFNEDTGFPASEINLATG--RKSYPGWAGGCSILSEVGTLQLEFNY 233 (522)
T ss_pred eehhhHhHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcCCCCCCcceeecccC--CCCCcccCCCccchhhhhhHHHHHHH
Confidence 3444556789999999999999999988888763222233322111111100 000000012223322 333333 456
Q ss_pred HHhccCCCchHHHHHHHH
Q 007406 160 LFRWTKEMVYADYYERAL 177 (605)
Q Consensus 160 Lf~~tgD~~YaD~~ERal 177 (605)
|-++|||++|.|..+|+.
T Consensus 234 LS~lTGd~kY~~~a~~i~ 251 (522)
T PTZ00470 234 LSEITGDPKYAEYVDKVM 251 (522)
T ss_pred HHHhhCCHHHHHHHHHHH
Confidence 899999999999999885
No 29
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=58.92 E-value=57 Score=33.75 Aligned_cols=128 Identities=15% Similarity=0.046 Sum_probs=75.9
Q ss_pred cchhHHHHHHHHHcCCHHHHHHHhhcccC---------CcchhhhhcCCCCCccccccccc--eeehhhhHHHHhCCchH
Q 007406 34 GGMNDVLYRLYTITQDPKHLLLAHLFDKP---------CFLGLLAVQADDISGFHANTHIP--VVIGSQMRYEVTGDPLY 102 (605)
Q Consensus 34 GGmne~L~~LY~~TGd~~yL~lA~~F~~~---------~~~~~l~~~~D~l~g~HanthiP--~~~G~a~~Y~~TGd~~y 102 (605)
.|+.-+|.++|+.+.++.+.++++....- ..+++. ...+.......--|-. ++......|+.++|+.+
T Consensus 162 ~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~ 240 (343)
T cd04434 162 AGILLALLLLYKKTVDKSLEALIKALLKYERRLQDDSGGFWWPS-RSNGGNRFLVAWCHGAPGILLALLLAYKALGDDKY 240 (343)
T ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHccCCCCCCCCCC-CCCCCccccceecCCChhHHHHHHHHHHHcCcHHH
Confidence 56779999999999888888887665320 111110 0000000000111222 22335567899999999
Q ss_pred HHHHHHHHHHhhccCeEeecCCCCCCCCCCCccccccCCCCccccchhhHHHHHHHHHHhccCCCchHHHHHHHHhcccc
Q 007406 103 KVTGTFFMDIVNASHGYATGGTSAGEFWSDPKRLASTLGTENEESCTTYNMLKVSRHLFRWTKEMVYADYYERALTNGVL 182 (605)
Q Consensus 103 ~~aa~~fw~~v~~~h~y~TGG~g~~E~f~~p~~L~~~l~~~~~EtCas~nmlkl~~~Lf~~tgD~~YaD~~ERalyN~il 182 (605)
.+.++...+.+.++.... ....+=.|...+.+.+..+|.+.++|.+|.+..++.. +.++
T Consensus 241 ~~~~~~~~~~~~~~~~~~--------------------~~~~~lChG~~G~~~~ll~l~~~~~~~~~~~~a~~~~-~~~~ 299 (343)
T cd04434 241 DEAAEKALELAWKRGLLE--------------------LKNPGLCHGIAGNLLILLLLYKLTGDLKFLARALALA-LLLI 299 (343)
T ss_pred HHHHHHHHHHHHHhhhcc--------------------CCCCCcCcCccchHHHHHHHHHHhCCHHHHHHHHHHH-HHHH
Confidence 998887777665422110 1223334556777888889999999999888776554 4544
Q ss_pred c
Q 007406 183 S 183 (605)
Q Consensus 183 a 183 (605)
.
T Consensus 300 ~ 300 (343)
T cd04434 300 S 300 (343)
T ss_pred H
Confidence 4
No 30
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=58.07 E-value=58 Score=34.58 Aligned_cols=126 Identities=13% Similarity=0.039 Sum_probs=68.9
Q ss_pred HHHHHHHHHcCCHHHHHHHhhcccCCcchhhhhc--------CCCCCcccccccccee----eh----hhhHHHHhC---
Q 007406 38 DVLYRLYTITQDPKHLLLAHLFDKPCFLGLLAVQ--------ADDISGFHANTHIPVV----IG----SQMRYEVTG--- 98 (605)
Q Consensus 38 e~L~~LY~~TGd~~yL~lA~~F~~~~~~~~l~~~--------~D~l~g~HanthiP~~----~G----~a~~Y~~TG--- 98 (605)
.-|+++|+.|+|++|.+.+.+=.+ +.|..| .+.+.+ +-..||+.- +. +.++++-.+
T Consensus 51 ~fLa~~y~~t~d~~y~~A~~rgld----~LL~aQypnGGWPQf~p~~~-~Y~~~ITfND~am~~vl~lL~~i~~~~~~~~ 125 (290)
T TIGR02474 51 RYLAQVYQQEKNAKYRDAARKGIE----YLLKAQYPNGGWPQFYPLKG-GYSDAITYNDNAMVNVLTLLDDIANGKDPFD 125 (290)
T ss_pred HHHHHHHHhcCchhHHHHHHHHHH----HHHhhhCCCCCcCcccCCcC-CcccccccCcHHHHHHHHHHHHHHhccCCcc
Confidence 569999999999999998876421 112211 122222 335677742 22 222233222
Q ss_pred ------CchHHHHHHHHHHHhhccCeEeecCCCCCCCCCCCc---cccccC-------CCCccccchhhHHHHHHHHHHh
Q 007406 99 ------DPLYKVTGTFFMDIVNASHGYATGGTSAGEFWSDPK---RLASTL-------GTENEESCTTYNMLKVSRHLFR 162 (605)
Q Consensus 99 ------d~~y~~aa~~fw~~v~~~h~y~TGG~g~~E~f~~p~---~L~~~l-------~~~~~EtCas~nmlkl~~~Lf~ 162 (605)
.++.+.+.+...+.+.+.+. +.||.=.. |..-+ +|...- +-.+.||+.. .+.|..
T Consensus 126 ~~~~~~~~r~~~Ai~Rgid~ILktQ~-~~gg~~t~--Wg~Qyd~~tl~Pa~AR~yE~pSls~~ES~~i------v~~LM~ 196 (290)
T TIGR02474 126 VFPDSTRTRAKTAVTKGIECILKTQV-VQNGKLTV--WCQQHDALTLQPKKARAYELPSLSSSESVGI------LLFLMT 196 (290)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhhc-ccCCcCCc--hhhccCccccccccccccCCcccccccHHHH------HHHHhc
Confidence 15788899999999986443 34444221 22222 222111 1345555544 444455
Q ss_pred cc-CCCchHHHHHHHH
Q 007406 163 WT-KEMVYADYYERAL 177 (605)
Q Consensus 163 ~t-gD~~YaD~~ERal 177 (605)
+. +++++.+-+|-++
T Consensus 197 ~~~ps~~i~~ai~~A~ 212 (290)
T TIGR02474 197 QPNPSAEIKEAIRAGV 212 (290)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 44 7788888777654
No 31
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=57.27 E-value=10 Score=40.93 Aligned_cols=72 Identities=18% Similarity=0.130 Sum_probs=52.6
Q ss_pred ccccceeehhhhHHHHhCCchHHHHHHHHHHHhhccCeEeecCCCCCCCCCCCccccccCCCCccccchhhHHHHHHHHH
Q 007406 81 NTHIPVVIGSQMRYEVTGDPLYKVTGTFFMDIVNASHGYATGGTSAGEFWSDPKRLASTLGTENEESCTTYNMLKVSRHL 160 (605)
Q Consensus 81 nthiP~~~G~a~~Y~~TGd~~y~~aa~~fw~~v~~~h~y~TGG~g~~E~f~~p~~L~~~l~~~~~EtCas~nmlkl~~~L 160 (605)
..+-...-|.+++|+.|+|++|++...++.+...... | -+|+.+ +.+......--|
T Consensus 36 we~GV~lyGv~~~~eAT~d~~yl~~l~~~~d~~i~~~-----g-------~~~~~i------------d~i~~g~~L~~L 91 (357)
T COG4225 36 WEQGVFLYGVARAYEATGDAEYLDYLKTWFDEQIDEG-----G-------LPPRNI------------DHIAAGLTLLPL 91 (357)
T ss_pred ccccchHHHHHHHHHHcCcHHHHHHHHHHHHhhhccC-----C-------CCccch------------hhhccCceeeeh
Confidence 4466677899999999999999999999998765432 2 111111 223444566678
Q ss_pred HhccCCCchHHHHHHH
Q 007406 161 FRWTKEMVYADYYERA 176 (605)
Q Consensus 161 f~~tgD~~YaD~~ERa 176 (605)
++.|+|++|....++.
T Consensus 92 ~e~T~~~~Yl~~a~~~ 107 (357)
T COG4225 92 YEQTGDPRYLEAAIKL 107 (357)
T ss_pred hhhhCCHHHHHHHHHH
Confidence 9999999999888764
No 32
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=56.27 E-value=22 Score=38.01 Aligned_cols=77 Identities=16% Similarity=0.070 Sum_probs=51.3
Q ss_pred cchhHHHHHHHHHcCCHHHHHHHhhcccCCcchhhhhcCCCCCccccccccc--eeehhhhHHHHhCCchHHHHHHHHHH
Q 007406 34 GGMNDVLYRLYTITQDPKHLLLAHLFDKPCFLGLLAVQADDISGFHANTHIP--VVIGSQMRYEVTGDPLYKVTGTFFMD 111 (605)
Q Consensus 34 GGmne~L~~LY~~TGd~~yL~lA~~F~~~~~~~~l~~~~D~l~g~HanthiP--~~~G~a~~Y~~TGd~~y~~aa~~fw~ 111 (605)
-|+..++.++|++++|+++++.|+.-.+.- + . ...+..-+..=|-- +..+..+.|+.|+|+.|++.|..+.+
T Consensus 227 ~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~--~---~-~g~~~~~~~lCHG~~G~~~~lL~~~~~~~~~~~~~~a~~~~~ 300 (343)
T cd04794 227 PGIVYLLAKAYLVFKEEQYLEAAIKCGELI--W---K-RGLLKKGPGLCHGIAGNAYAFLLLYRLTGDLKYLYRACKFAE 300 (343)
T ss_pred chHHHHHHHHHHHhCCHHHHHHHHHHHHHH--H---H-hCCccCCCccccCccchHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 466689999999999999999988754311 1 0 01110000111111 23446788999999999999999999
Q ss_pred Hhhcc
Q 007406 112 IVNAS 116 (605)
Q Consensus 112 ~v~~~ 116 (605)
.+.++
T Consensus 301 ~~~~~ 305 (343)
T cd04794 301 FLINY 305 (343)
T ss_pred HHhcc
Confidence 88754
No 33
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=54.77 E-value=44 Score=35.51 Aligned_cols=91 Identities=10% Similarity=0.071 Sum_probs=58.0
Q ss_pred hhhHHHHhCCchHHHHHHHHHHHhhccCeEeecCCCCCCCCCCCccccccCCCCccccchhhHHHHHHHHHHhccCC---
Q 007406 90 SQMRYEVTGDPLYKVTGTFFMDIVNASHGYATGGTSAGEFWSDPKRLASTLGTENEESCTTYNMLKVSRHLFRWTKE--- 166 (605)
Q Consensus 90 ~a~~Y~~TGd~~y~~aa~~fw~~v~~~h~y~TGG~g~~E~f~~p~~L~~~l~~~~~EtCas~nmlkl~~~Lf~~tgD--- 166 (605)
++++|+.|+|+.|+++++...+.+.. =.|..||...-+-... ...++++-+-. +.++.|.+.+.+.+..++
T Consensus 53 La~~y~~t~d~~y~~A~~rgld~LL~-aQypnGGWPQf~p~~~--~Y~~~ITfND~---am~~vl~lL~~i~~~~~~~~~ 126 (290)
T TIGR02474 53 LAQVYQQEKNAKYRDAARKGIEYLLK-AQYPNGGWPQFYPLKG--GYSDAITYNDN---AMVNVLTLLDDIANGKDPFDV 126 (290)
T ss_pred HHHHHHhcCchhHHHHHHHHHHHHHh-hhCCCCCcCcccCCcC--CcccccccCcH---HHHHHHHHHHHHHhccCCccc
Confidence 78889999999999999999999984 7899999986543222 22333322111 123566666666543332
Q ss_pred ------CchHHHHHHHHhcccccccCC
Q 007406 167 ------MVYADYYERALTNGVLSIQRG 187 (605)
Q Consensus 167 ------~~YaD~~ERalyN~ila~q~~ 187 (605)
.++...++|++= -||..|-+
T Consensus 127 ~~~~~~~r~~~Ai~Rgid-~ILktQ~~ 152 (290)
T TIGR02474 127 FPDSTRTRAKTAVTKGIE-CILKTQVV 152 (290)
T ss_pred ccHHHHHHHHHHHHHHHH-HHHHhhcc
Confidence 356666666653 45666643
No 34
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=53.54 E-value=67 Score=34.26 Aligned_cols=124 Identities=10% Similarity=-0.091 Sum_probs=69.9
Q ss_pred chhHHHHHHHHHcCCHHHHHHHhhcccC-------CcchhhhhcCCCCCccccccccc--eeehhhhHHHHhCCchHHHH
Q 007406 35 GMNDVLYRLYTITQDPKHLLLAHLFDKP-------CFLGLLAVQADDISGFHANTHIP--VVIGSQMRYEVTGDPLYKVT 105 (605)
Q Consensus 35 Gmne~L~~LY~~TGd~~yL~lA~~F~~~-------~~~~~l~~~~D~l~g~HanthiP--~~~G~a~~Y~~TGd~~y~~a 105 (605)
|+.-+|.++|+.++++++++.++...+. .-.|+-..+.+.-....+-=|-. ++......|++++|+.+++.
T Consensus 169 GI~~~L~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~g~w~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~ 248 (343)
T cd04794 169 GILYILLQTPLFLLKPSLAPLIKRSLDYLLSLQFPSGNFPSSLGNRKRDRLVQWCHGAPGIVYLLAKAYLVFKEEQYLEA 248 (343)
T ss_pred HHHHHHHhhhhhcCCccHHHHHHHHHHHHHHhhccCCCCCCccCCCCCCccccccCCCchHHHHHHHHHHHhCCHHHHHH
Confidence 6668899999999999999988865320 01111111100000000011222 22234567899999999998
Q ss_pred HHHHHHHhhccCeEeecCCCCCCCCCCCccccccCCCCccccchhhHHHHHHHHHHhccCCCchHHHHHHHHhc
Q 007406 106 GTFFMDIVNASHGYATGGTSAGEFWSDPKRLASTLGTENEESCTTYNMLKVSRHLFRWTKEMVYADYYERALTN 179 (605)
Q Consensus 106 a~~fw~~v~~~h~y~TGG~g~~E~f~~p~~L~~~l~~~~~EtCas~nmlkl~~~Lf~~tgD~~YaD~~ERalyN 179 (605)
++..-+.+.++... . ...+=.|..-..+...-+|++.++|.+|.+...+.+=.
T Consensus 249 ~~~~~~~~~~~g~~-~--------------------~~~~lCHG~~G~~~~lL~~~~~~~~~~~~~~a~~~~~~ 301 (343)
T cd04794 249 AIKCGELIWKRGLL-K--------------------KGPGLCHGIAGNAYAFLLLYRLTGDLKYLYRACKFAEF 301 (343)
T ss_pred HHHHHHHHHHhCCc-c--------------------CCCccccCccchHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 88776665432110 0 01122223344456667888999999988877655443
No 35
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=50.07 E-value=61 Score=36.38 Aligned_cols=126 Identities=21% Similarity=0.246 Sum_probs=67.9
Q ss_pred HHHHHHHHHc--CCHHHHHHHhhccc---CCcchhhhhcCCCCCcccccc------ccc---ee---eh-----hhhHHH
Q 007406 38 DVLYRLYTIT--QDPKHLLLAHLFDK---PCFLGLLAVQADDISGFHANT------HIP---VV---IG-----SQMRYE 95 (605)
Q Consensus 38 e~L~~LY~~T--Gd~~yL~lA~~F~~---~~~~~~l~~~~D~l~g~Hant------hiP---~~---~G-----~a~~Y~ 95 (605)
-.|.-.|++| +|+.+|+.|..+-+ +.|..+ ..++-.+.|- +.+ .. +| ..++.+
T Consensus 84 GgLLSay~ls~~~d~~lL~kA~~lad~Ll~aF~t~-----~g~P~~~~n~~~~~~~~~~~~~~~la~~gs~~lEf~~LS~ 158 (452)
T PF01532_consen 84 GGLLSAYDLSGEGDPILLSKAVELADRLLPAFDTP-----TGIPYPRVNLRTGGKNRWPGGESSLAEAGSLQLEFTRLSQ 158 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSSS-----SS---SEEETTTCEEETTCCGEEEHHHHCSSHHHHHHHHH
T ss_pred hhhHHHHHHHhccchHHHHHHHHHHHHHHHhccCC-----CccccceeeecccCCCCCCCCcccccccccceechhHHHH
Confidence 4466789999 99999999988743 233221 1111111111 111 11 22 456789
Q ss_pred HhCCchHHHHHHHHHHHhhc--cCeEeecCCCC-----CCCCCCCccccccCCCCccccchhhHHHHHHHHHHhccC--C
Q 007406 96 VTGDPLYKVTGTFFMDIVNA--SHGYATGGTSA-----GEFWSDPKRLASTLGTENEESCTTYNMLKVSRHLFRWTK--E 166 (605)
Q Consensus 96 ~TGd~~y~~aa~~fw~~v~~--~h~y~TGG~g~-----~E~f~~p~~L~~~l~~~~~EtCas~nmlkl~~~Lf~~tg--D 166 (605)
+|||++|.+++++.++.+.+ .+.-..|-.+. ...|.. + ..+-+...=.-|+.|- .++.+++ |
T Consensus 159 lTgd~kY~~~a~~~~~~l~~~~~~~~~~gL~p~~id~~~g~~~~-----~-~~~~Ga~~DS~YEYLl---K~~lL~g~~d 229 (452)
T PF01532_consen 159 LTGDPKYFDAADRIYDALWRSQNRSKIPGLFPNFIDPSTGKWTS-----S-SISLGAGGDSFYEYLL---KMYLLLGGTD 229 (452)
T ss_dssp HHS-THHHHHHHHHHHHHHCCCCCHSBTTB-BSEEETTTS-BSS-----T-EE-SSTTTHHHHHHHH---HHHHHTTTTT
T ss_pred HhhccHHHHHHHHHHHHHHHhhhccCCcccCcceecCCcCcccc-----c-ccccCCCcchHHHhhh---hhhhhcCccc
Confidence 99999999999999999987 33445555543 111111 0 0011222222344442 2233344 8
Q ss_pred CchHHHHHHHH
Q 007406 167 MVYADYYERAL 177 (605)
Q Consensus 167 ~~YaD~~ERal 177 (605)
..|.+.++.++
T Consensus 230 ~~~~~~~~~a~ 240 (452)
T PF01532_consen 230 EQYRDMYDEAV 240 (452)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 88999998875
No 36
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=49.50 E-value=23 Score=38.38 Aligned_cols=79 Identities=13% Similarity=0.037 Sum_probs=49.7
Q ss_pred cchhHHHHHHHHHcCCHHHHHHHhhcccCCcchhhhhcCCCCCccccccccc--eeehhhhHHHHhCCchHHHHHHHHHH
Q 007406 34 GGMNDVLYRLYTITQDPKHLLLAHLFDKPCFLGLLAVQADDISGFHANTHIP--VVIGSQMRYEVTGDPLYKVTGTFFMD 111 (605)
Q Consensus 34 GGmne~L~~LY~~TGd~~yL~lA~~F~~~~~~~~l~~~~D~l~g~HanthiP--~~~G~a~~Y~~TGd~~y~~aa~~fw~ 111 (605)
.|+..++..+++.++|+++++.|....+...-..... ... ..+..=|-- +.....+.|+.|+|+.++++++++.+
T Consensus 247 ~Gi~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~-~~~~lChG~~G~~~~l~~~~~~~~~~~~~~~a~~~~~ 323 (382)
T cd04793 247 PGIARALQLAGKALDDQKLQEAAEKILKAALKDKKQL--SKL-ISPTLCHGLAGLLFIFYLLYKDTNTNEFKSALEYLLN 323 (382)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhChhhh--ccC-CCCCcCccHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 3566899999999999999999887743211000000 000 001111221 12235677899999999999999988
Q ss_pred Hhhc
Q 007406 112 IVNA 115 (605)
Q Consensus 112 ~v~~ 115 (605)
.+..
T Consensus 324 ~~l~ 327 (382)
T cd04793 324 QIIS 327 (382)
T ss_pred HHHH
Confidence 8764
No 37
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls [].; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2V8J_A 2V8K_A 2V8I_A.
Probab=47.83 E-value=21 Score=40.40 Aligned_cols=84 Identities=18% Similarity=0.153 Sum_probs=51.3
Q ss_pred HHHHHHHHHcCCHHHHHHHhhcccCCcchhhhhcCCCCCcccc--ccc--cc-eeehhhhHHHHhCCchHHHHHHHHHHH
Q 007406 38 DVLYRLYTITQDPKHLLLAHLFDKPCFLGLLAVQADDISGFHA--NTH--IP-VVIGSQMRYEVTGDPLYKVTGTFFMDI 112 (605)
Q Consensus 38 e~L~~LY~~TGd~~yL~lA~~F~~~~~~~~l~~~~D~l~g~Ha--nth--iP-~~~G~a~~Y~~TGd~~y~~aa~~fw~~ 112 (605)
.++++-|++++|+...+++..+-+..-++.+. .+....... +++ -| .+.++..+|+.|+++.|++.|+..=++
T Consensus 391 l~~vra~~~s~D~~Lw~~~~~m~~~~gLGdig--~~~~~~~~~~~~~~~~sp~~L~allEL~~atq~~~~l~lA~~~g~~ 468 (557)
T PF06917_consen 391 LPYVRAYRLSRDPELWDLARTMAHHFGLGDIG--NAAGKEPRVNMQTDNASPYLLFALLELYQATQDARYLELADQVGEN 468 (557)
T ss_dssp HHHHHHHHHS--HHHHHHHHHHHHHTT-EE-T--TBTTBS-EE-TT-----HHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhcCccccc--CccccccccccCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 78999999999999999999886533333221 111111111 122 22 357788999999999999999888888
Q ss_pred hhccCeEeecCC
Q 007406 113 VNASHGYATGGT 124 (605)
Q Consensus 113 v~~~h~y~TGG~ 124 (605)
+.+ +.|.-|=+
T Consensus 469 l~~-~~~~~GlF 479 (557)
T PF06917_consen 469 LFE-QHFHRGLF 479 (557)
T ss_dssp HHH-HHEETTEE
T ss_pred HHH-HHccCcee
Confidence 875 44445543
No 38
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=47.76 E-value=70 Score=27.20 Aligned_cols=21 Identities=19% Similarity=0.528 Sum_probs=17.3
Q ss_pred eEEEEeecCcccCCCcEEEECCeeec
Q 007406 297 SSLNLRIPLWTNSNGAKATLNGQSLS 322 (605)
Q Consensus 297 ftL~LRIP~Wa~~~~~~v~VNG~~~~ 322 (605)
-+|.+.+|+ +++|.|||++.+
T Consensus 3 a~itv~vPa-----dAkl~v~G~~t~ 23 (75)
T TIGR03000 3 ATITVTLPA-----DAKLKVDGKETN 23 (75)
T ss_pred eEEEEEeCC-----CCEEEECCeEcc
Confidence 378899992 689999999865
No 39
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]
Probab=46.85 E-value=31 Score=37.05 Aligned_cols=73 Identities=19% Similarity=0.124 Sum_probs=50.5
Q ss_pred cchhHHHHHHHHHcCCHHHHHHHhhccc----CCcchhhhhcCCCCCccccccccce--eehhhhHHHHhCCchHHHHHH
Q 007406 34 GGMNDVLYRLYTITQDPKHLLLAHLFDK----PCFLGLLAVQADDISGFHANTHIPV--VIGSQMRYEVTGDPLYKVTGT 107 (605)
Q Consensus 34 GGmne~L~~LY~~TGd~~yL~lA~~F~~----~~~~~~l~~~~D~l~g~HanthiP~--~~G~a~~Y~~TGd~~y~~aa~ 107 (605)
.||.-.|++.|++=++++||+-|..--+ ..++- .+.- .-|-.- .--...+|++|+|.+|+-.|.
T Consensus 283 pGv~~~L~kAy~VF~Eekyl~aa~ecadvVW~rGlLk---kg~G-------ichGvaGNaYvFLsLyRLT~d~kYlyRA~ 352 (403)
T KOG2787|consen 283 PGVAYTLAKAYQVFKEEKYLEAAMECADVVWKRGLLK---KGVG-------ICHGVAGNAYVFLSLYRLTGDMKYLYRAK 352 (403)
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhh---cCCc-------ccccccCchhhhHhHHHHcCcHHHHHHHH
Confidence 4788999999999999999998876532 22211 1110 011111 111567899999999999999
Q ss_pred HHHHHhhcc
Q 007406 108 FFMDIVNAS 116 (605)
Q Consensus 108 ~fw~~v~~~ 116 (605)
.|...+.++
T Consensus 353 kFae~lld~ 361 (403)
T KOG2787|consen 353 KFAEWLLDY 361 (403)
T ss_pred HHHHHHHhh
Confidence 999998863
No 40
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=42.88 E-value=34 Score=35.45 Aligned_cols=76 Identities=14% Similarity=-0.014 Sum_probs=48.2
Q ss_pred cchhHHHHHHHHHcCCHHHHHHHhhcccCCcchhhhhcCCCCCccccccccc--eeehhhhHHHHhCCchHHHHHHHHHH
Q 007406 34 GGMNDVLYRLYTITQDPKHLLLAHLFDKPCFLGLLAVQADDISGFHANTHIP--VVIGSQMRYEVTGDPLYKVTGTFFMD 111 (605)
Q Consensus 34 GGmne~L~~LY~~TGd~~yL~lA~~F~~~~~~~~l~~~~D~l~g~HanthiP--~~~G~a~~Y~~TGd~~y~~aa~~fw~ 111 (605)
.|+..++.++|+.|+|+++++.++...+...-. .... ...+..=|-. +.......|+.++|+.+++.++.+..
T Consensus 222 ~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~lChG~~G~~~~ll~l~~~~~~~~~~~~a~~~~~ 296 (343)
T cd04434 222 PGILLALLLAYKALGDDKYDEAAEKALELAWKR----GLLE-LKNPGLCHGIAGNLLILLLLYKLTGDLKFLARALALAL 296 (343)
T ss_pred hhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHh----hhcc-CCCCCcCcCccchHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 567799999999999999999988764211100 0000 0011111222 22335677999999999998887776
Q ss_pred Hhh
Q 007406 112 IVN 114 (605)
Q Consensus 112 ~v~ 114 (605)
.+.
T Consensus 297 ~~~ 299 (343)
T cd04434 297 LLI 299 (343)
T ss_pred HHH
Confidence 654
No 41
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=40.41 E-value=28 Score=41.94 Aligned_cols=72 Identities=24% Similarity=0.242 Sum_probs=43.5
Q ss_pred chhHHHHHHHHHcCCHHHHHHHhhcccCCcchhhhhcCCCCC-ccccccccc--eeehhhhHHHHhCCchHHHHHHH
Q 007406 35 GMNDVLYRLYTITQDPKHLLLAHLFDKPCFLGLLAVQADDIS-GFHANTHIP--VVIGSQMRYEVTGDPLYKVTGTF 108 (605)
Q Consensus 35 Gmne~L~~LY~~TGd~~yL~lA~~F~~~~~~~~l~~~~D~l~-g~HanthiP--~~~G~a~~Y~~TGd~~y~~aa~~ 108 (605)
|..-+|..+|+.|.++|.|++|--.-+..... ....|.-. -.....|.. ++...+.+|++|||+.+++..+.
T Consensus 746 g~i~~L~~iYk~~~epk~l~~ais~~~~l~~~--~v~~d~s~~~l~gfshg~sgi~~tL~~ly~~T~e~~l~~~i~e 820 (963)
T COG4403 746 GVICVLVSIYKLTDEPKFLELAISLGRILMEK--IVGNDSSETVLLGFSHGASGIILTLLKLYEATGEESLLKKIKE 820 (963)
T ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHHHHH--hhccccccceecccccchHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 33478999999999999999998664321111 11222210 001122333 23336788999999988776654
No 42
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=40.35 E-value=67 Score=35.44 Aligned_cols=115 Identities=15% Similarity=0.146 Sum_probs=81.4
Q ss_pred ccccccceeehhhhHHHHhCCchHHHHHHHHHHHhhccCeEeecCCC-CCCCCCCCccccccCCCCccccchhhHHHHHH
Q 007406 79 HANTHIPVVIGSQMRYEVTGDPLYKVTGTFFMDIVNASHGYATGGTS-AGEFWSDPKRLASTLGTENEESCTTYNMLKVS 157 (605)
Q Consensus 79 HanthiP~~~G~a~~Y~~TGd~~y~~aa~~fw~~v~~~h~y~TGG~g-~~E~f~~p~~L~~~l~~~~~EtCas~nmlkl~ 157 (605)
-+|.|.-+++.+...|++||++.|++.|...-+.+.. | ++-+..| -.|+|..+-.-.........|-==-.++++|.
T Consensus 172 ~sNp~MHl~EA~LA~~e~~~~~~~~~~A~~ia~l~~~-r-f~d~~~g~v~E~fd~dW~p~~~frg~~~ePGH~fEW~~Ll 249 (388)
T COG2942 172 GSNPHMHLLEAMLAAYEATGEKTWLDRADRIADLIIS-R-FADAESGLVREHFDHDWNPAHGFRGRGIEPGHQFEWAWLL 249 (388)
T ss_pred CCCcchHHHHHHHHHHhccCchhHHHHHHHHHHHHHH-H-hhhcccCcHhhhccccCCcCCCcccCCCCCchHHHHHHHH
Confidence 4577777888899999999999999988888887763 3 3444444 37887544311111123456666678899999
Q ss_pred HHHHhccCCCchHHHHHHHHhcccccccCCCCCCcEEEe
Q 007406 158 RHLFRWTKEMVYADYYERALTNGVLSIQRGTEPGVMIYM 196 (605)
Q Consensus 158 ~~Lf~~tgD~~YaD~~ERalyN~ila~q~~~~~g~~~Y~ 196 (605)
.++-+..++....+..=|..-|++--+.++ +.|.++|-
T Consensus 250 l~~a~~~~~~~l~~~A~~lf~~a~~~g~d~-~~gg~~~s 287 (388)
T COG2942 250 LDIARRRGRAWLIEAARRLFDIAVADGWDP-ERGGAYYS 287 (388)
T ss_pred HHHHHHhchhHHHHHHHHHHHHHHHhccCc-ccCeEEEE
Confidence 999999999777777777777777667776 66766654
No 43
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=39.55 E-value=1.9e+02 Score=31.21 Aligned_cols=129 Identities=10% Similarity=-0.085 Sum_probs=73.5
Q ss_pred chhHHHHHHHHHc-CCHHHHHHHhhc---------ccCC-cchhhhh----cCCCCC--c---cccccccc--eeehhhh
Q 007406 35 GMNDVLYRLYTIT-QDPKHLLLAHLF---------DKPC-FLGLLAV----QADDIS--G---FHANTHIP--VVIGSQM 92 (605)
Q Consensus 35 Gmne~L~~LY~~T-Gd~~yL~lA~~F---------~~~~-~~~~l~~----~~D~l~--g---~HanthiP--~~~G~a~ 92 (605)
|+.-+|..+|+.+ +++++++.++.. .++. .+++... ..+.-. . .++--|-. ++.....
T Consensus 176 Gi~~~L~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~wChG~~Gi~~~l~~ 255 (382)
T cd04793 176 GPLALLALAKERGIRVDGQLEAIQKIIAWLDRWRLKNRKGPWWPGLITNREQIGGRPNNPNPFRDAWCYGTPGIARALQL 255 (382)
T ss_pred HHHHHHHHHHHcCCCcCChHHHHHHHHHHHHHHHHhCCCCCCCcccccHHHHhccccccCCCCCCCCCCCcHHHHHHHHH
Confidence 5568899999999 899999986653 1111 1111110 000000 0 00111111 1122345
Q ss_pred HHHHhCCchHHHHHHHHHHHhhccCeEeecCCCCCCCCCCCccccccCCCCccccchhhHHHHHHHHHHhccCCCchHHH
Q 007406 93 RYEVTGDPLYKVTGTFFMDIVNASHGYATGGTSAGEFWSDPKRLASTLGTENEESCTTYNMLKVSRHLFRWTKEMVYADY 172 (605)
Q Consensus 93 ~Y~~TGd~~y~~aa~~fw~~v~~~h~y~TGG~g~~E~f~~p~~L~~~l~~~~~EtCas~nmlkl~~~Lf~~tgD~~YaD~ 172 (605)
.++.++|+.+++.+....+.+.....- .+ . . ...+=.|.....+.+..+|++.++|..|.+.
T Consensus 256 ~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~------~------~-----~~~~lChG~~G~~~~l~~~~~~~~~~~~~~~ 317 (382)
T cd04793 256 AGKALDDQKLQEAAEKILKAALKDKKQ-LS------K------L-----ISPTLCHGLAGLLFIFYLLYKDTNTNEFKSA 317 (382)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHhChhh-hc------c------C-----CCCCcCccHHHHHHHHHHHHHHhCCcHHHHH
Confidence 578999999999888776665432100 00 0 0 1123334557778888999999999999998
Q ss_pred HHHHHhccc
Q 007406 173 YERALTNGV 181 (605)
Q Consensus 173 ~ERalyN~i 181 (605)
+++.+=.-+
T Consensus 318 a~~~~~~~l 326 (382)
T cd04793 318 LEYLLNQII 326 (382)
T ss_pred HHHHHHHHH
Confidence 887665443
No 44
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=39.12 E-value=61 Score=29.07 Aligned_cols=36 Identities=25% Similarity=0.255 Sum_probs=26.5
Q ss_pred CcEEEECCeeecCCCCCCEEEEEeeeCCCCEEEEEecceeEEEec
Q 007406 311 GAKATLNGQSLSLPAPGNFISVTQRWSSTDKLTIQLPINLRTEAI 355 (605)
Q Consensus 311 ~~~v~VNG~~~~~~~~ggy~~I~R~W~~GD~V~L~lpm~lr~~~~ 355 (605)
+-+|.|||+.+.... .=+.||+|+|.|.-......+
T Consensus 33 ~GrV~vNG~~aKpS~---------~VK~GD~l~i~~~~~~~~v~V 68 (100)
T COG1188 33 GGRVKVNGQRAKPSK---------EVKVGDILTIRFGNKEFTVKV 68 (100)
T ss_pred CCeEEECCEEccccc---------ccCCCCEEEEEeCCcEEEEEE
Confidence 458999999885422 237899999999877766543
No 45
>PHA02651 IL-1 receptor antagonist; Provisional
Probab=38.58 E-value=19 Score=34.97 Aligned_cols=40 Identities=20% Similarity=0.360 Sum_probs=25.2
Q ss_pred ceEEEeecCCCCCCeeEEEeccCCCeEEEeccccCCCCeEEEE
Q 007406 503 SVFRLVAGLDGKDETISLEAVNQNGCFVYSGVNFNSGASLKLS 545 (605)
Q Consensus 503 s~f~~vpgl~g~~~~vsles~~~pg~~~~~~~~~~~g~~~~~~ 545 (605)
-.|.+--.=.| .+.+|||+.+||||+..... .....|.|-
T Consensus 104 kRFlFyr~~sG--~tstFESaafPgWfIsTs~~-e~~~PV~Lt 143 (165)
T PHA02651 104 KRFAFIRSDNG--HTSTFESVAFPGWFLCTSSG-DGIEPVGLT 143 (165)
T ss_pred eeEEEEEccCC--CceEEEecCCCCcEEEeccc-cCCcceEee
Confidence 34444433346 49999999999999985310 111467766
No 46
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 9 GH9 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family E. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1RQ5_A 1CLC_A 3H7L_B 1K72_B 1G87_B 1GA2_A 1KFG_A 1UT9_A 2YIK_A 3RX5_A ....
Probab=36.97 E-value=64 Score=35.64 Aligned_cols=24 Identities=25% Similarity=0.131 Sum_probs=20.6
Q ss_pred HHHHHHHHHcCCHHHHHHHhhccc
Q 007406 38 DVLYRLYTITQDPKHLLLAHLFDK 61 (605)
Q Consensus 38 e~L~~LY~~TGd~~yL~lA~~F~~ 61 (605)
.+-++||+.|||++|++.|+.+..
T Consensus 222 wAA~~Ly~aTg~~~Y~~~a~~~~~ 245 (444)
T PF00759_consen 222 WAAAELYRATGDESYLDYAKEYYD 245 (444)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHCC
T ss_pred HHHHHHHHhcCcHHHHHHHHHhHH
Confidence 578999999999999999998864
No 47
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A ....
Probab=32.88 E-value=2.7e+02 Score=24.06 Aligned_cols=43 Identities=14% Similarity=0.234 Sum_probs=32.8
Q ss_pred CCCCceEEEeecCCCCCCeeEEEeccCCCeEEEe-ccccCCCCeEEEE
Q 007406 499 EGDSSVFRLVAGLDGKDETISLEAVNQNGCFVYS-GVNFNSGASLKLS 545 (605)
Q Consensus 499 ~~~~s~f~~vpgl~g~~~~vsles~~~pg~~~~~-~~~~~~g~~~~~~ 545 (605)
.....+|+|+| .| +|++.|.+. ..|..|-. +.+...|+.|.+-
T Consensus 48 ~~~~Q~W~i~~--~~-~g~y~I~n~-~s~~~Ldv~~~~~~~g~~v~~~ 91 (105)
T PF14200_consen 48 GNDNQQWKIEP--VG-DGYYRIRNK-NSGKVLDVAGGSTANGTNVQQW 91 (105)
T ss_dssp SSGGGEEEEEE--ST-TSEEEEEET-STTEEEEEGGGSSSTTEBEEEE
T ss_pred CCcCcEEEEEE--ec-CCeEEEEEC-CCCcEEEECCCCCCCCCEEEEE
Confidence 36789999998 44 489999999 66888874 3455678888884
No 48
>COG1339 Transcriptional regulator of a riboflavin/FAD biosynthetic operon [Transcription / Coenzyme metabolism]
Probab=29.39 E-value=56 Score=32.85 Aligned_cols=47 Identities=26% Similarity=0.427 Sum_probs=35.1
Q ss_pred EEeecCcccCC-------CcEEEECCeeecCCCCCCEEEE-EeeeCCCCEEEEEecceeEEE
Q 007406 300 NLRIPLWTNSN-------GAKATLNGQSLSLPAPGNFISV-TQRWSSTDKLTIQLPINLRTE 353 (605)
Q Consensus 300 ~LRIP~Wa~~~-------~~~v~VNG~~~~~~~~ggy~~I-~R~W~~GD~V~L~lpm~lr~~ 353 (605)
.+|||+|-.++ -+.++|||. .|.+.+ +|+-.+.|+|+|-=|+.+|-+
T Consensus 145 gi~Iegf~~~~RtfG~v~~yp~~Ingi-------~gaiV~P~rT~h~~dviEIIapv~LR~~ 199 (214)
T COG1339 145 GIRIEGFKTEDRTFGGVKAYPCKINGI-------EGAIVIPERTHHPTDVIEIIAPVKLRDE 199 (214)
T ss_pred CEeeCCCCCCCceeccEEEEEEEEcCc-------ceEEEeeccccCCcceEEEEccHhHHHH
Confidence 48899997541 156789982 345555 588888999999999999864
No 49
>TIGR00187 ribE riboflavin synthase, alpha subunit. The name ribE was selected, from among alternatives including ribB and ribC, to match the usage in EcoCyc.
Probab=29.29 E-value=1.4e+02 Score=29.98 Aligned_cols=54 Identities=19% Similarity=0.198 Sum_probs=36.0
Q ss_pred eeEEEEeecCcc----cCCCcEEEECCeeecCCC-CCCEEEEE-----------eeeCCCCEEEEEeccee
Q 007406 296 SSSLNLRIPLWT----NSNGAKATLNGQSLSLPA-PGNFISVT-----------QRWSSTDKLTIQLPINL 350 (605)
Q Consensus 296 ~ftL~LRIP~Wa----~~~~~~v~VNG~~~~~~~-~ggy~~I~-----------R~W~~GD~V~L~lpm~l 350 (605)
...|.++.|.+. .. +-.|.|||.-..... .++.+.++ ..|+.||.|-|+.+|++
T Consensus 21 ~~~l~i~~~~~~~~~l~~-G~SIAvnGvCLTV~~i~~~~f~vdvipETl~~TtL~~l~~G~~VNLEral~~ 90 (200)
T TIGR00187 21 FISLVVNLADHMLDDLEL-GDSIAVNGVCLTVTEINKNHFSVDLSPETLKRTNLGDLKVGTWVNIERALKA 90 (200)
T ss_pred cEEEEEEeChHHhccccc-CCEEEECcEEEEEEEEcCCEEEEEEEHHHhhhcchhhCcCCCEEEEcccCCC
Confidence 456677777332 22 578999998776543 45556665 37889999888877654
No 50
>PLN00119 endoglucanase
Probab=28.32 E-value=1e+02 Score=35.23 Aligned_cols=63 Identities=19% Similarity=0.216 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHhhccCeEeecCCCCCCCCCCCccccccCCCCccccchhhHHHHHHHHHHhccCCCchHHHHHHH
Q 007406 101 LYKVTGTFFMDIVNASHGYATGGTSAGEFWSDPKRLASTLGTENEESCTTYNMLKVSRHLFRWTKEMVYADYYERA 176 (605)
Q Consensus 101 ~y~~aa~~fw~~v~~~h~y~TGG~g~~E~f~~p~~L~~~l~~~~~EtCas~nmlkl~~~Lf~~tgD~~YaD~~ERa 176 (605)
+++++|+..|+....++..-....... ...|+++.-.=+++.-+-.||+.|||.+|.++++..
T Consensus 203 ~lL~~Ak~~y~fA~~~~g~y~~~~~~~-------------~g~Y~ss~~~DEl~WAAawLY~aTgd~~Yl~~~~~~ 265 (489)
T PLN00119 203 ILIGHAKDLFEFAKAHPGLYQNSIPNA-------------GGFYASSGYEDELLWAAAWLHRATNDQTYLDYLTQA 265 (489)
T ss_pred HHHHHHHHHHHHHHhCCCcccCCCCCC-------------CCCCCCCchhhHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 568999999999877653211111100 122444444557888889999999999999998743
No 51
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=28.20 E-value=1.8e+02 Score=32.14 Aligned_cols=129 Identities=17% Similarity=0.095 Sum_probs=74.8
Q ss_pred HHHHHHHHHcCCHHHHHHHhhcccC---CcchhhhhcCCCCCccc---cccccceee------h--------hhhHHHHh
Q 007406 38 DVLYRLYTITQDPKHLLLAHLFDKP---CFLGLLAVQADDISGFH---ANTHIPVVI------G--------SQMRYEVT 97 (605)
Q Consensus 38 e~L~~LY~~TGd~~yL~lA~~F~~~---~~~~~l~~~~D~l~g~H---anthiP~~~------G--------~a~~Y~~T 97 (605)
|+|.--|+.||+++||+.|..+.+- .|++.. +-+-+.| .=.+.+.+. | +.+..+..
T Consensus 181 EA~LA~~e~~~~~~~~~~A~~ia~l~~~rf~d~~----~g~v~E~fd~dW~p~~~frg~~~ePGH~fEW~~Lll~~a~~~ 256 (388)
T COG2942 181 EAMLAAYEATGEKTWLDRADRIADLIISRFADAE----SGLVREHFDHDWNPAHGFRGRGIEPGHQFEWAWLLLDIARRR 256 (388)
T ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHHHhhhcc----cCcHhhhccccCCcCCCcccCCCCCchHHHHHHHHHHHHHHh
Confidence 9999999999999999999887431 222211 1110111 011222222 3 34556788
Q ss_pred CCchHHHHHHHHHHHhhccCeE-eecCCCCC-CCCCCCccccccCCCCccccchhhHHHHHHHHHHhccC-CCchHHHHH
Q 007406 98 GDPLYKVTGTFFMDIVNASHGY-ATGGTSAG-EFWSDPKRLASTLGTENEESCTTYNMLKVSRHLFRWTK-EMVYADYYE 174 (605)
Q Consensus 98 Gd~~y~~aa~~fw~~v~~~h~y-~TGG~g~~-E~f~~p~~L~~~l~~~~~EtCas~nmlkl~~~Lf~~tg-D~~YaD~~E 174 (605)
++......|+..+++...+-.= .+||..-. ..=+.+.+ ...=.=...+.+|-+-.|-..++ +.+|-+.+.
T Consensus 257 ~~~~l~~~A~~lf~~a~~~g~d~~~gg~~~sl~~D~~~~d-------~~~r~WpQ~E~l~AA~ala~~~~~~~~y~~~~~ 329 (388)
T COG2942 257 GRAWLIEAARRLFDIAVADGWDPERGGAYYSLDDDGSPHD-------RQQRLWPQTEALKAAVALAETTGARERYWQWYA 329 (388)
T ss_pred chhHHHHHHHHHHHHHHHhccCcccCeEEEEecCCCCcCC-------HHHhhChHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 8888888888888876542211 33443211 00001111 11112223345999999999999 999999999
Q ss_pred HHH
Q 007406 175 RAL 177 (605)
Q Consensus 175 Ral 177 (605)
|+.
T Consensus 330 R~~ 332 (388)
T COG2942 330 RAW 332 (388)
T ss_pred HHH
Confidence 875
No 52
>PRK09289 riboflavin synthase subunit alpha; Provisional
Probab=28.05 E-value=2.1e+02 Score=28.47 Aligned_cols=53 Identities=17% Similarity=0.307 Sum_probs=33.3
Q ss_pred eEEEEeecCcc---cCCCcEEEECCeeecCCC-CCCEEEEE-----------eeeCCCCEEEEEeccee
Q 007406 297 SSLNLRIPLWT---NSNGAKATLNGQSLSLPA-PGNFISVT-----------QRWSSTDKLTIQLPINL 350 (605)
Q Consensus 297 ftL~LRIP~Wa---~~~~~~v~VNG~~~~~~~-~ggy~~I~-----------R~W~~GD~V~L~lpm~l 350 (605)
..|.++.|... .. +-.|.|||.-..... .++.+.+. ..|+.||.|-|+-+|++
T Consensus 22 ~~~~i~~~~~~~~l~~-g~SIAvnGvcLTV~~~~~~~f~~~l~~eTl~~T~l~~l~~G~~VNLEra~~~ 89 (194)
T PRK09289 22 LRLTIEAGKLLSDLKL-GDSIAVNGVCLTVTEIDGDSFTVDVSPETLRRTNLGDLKVGDRVNLERALRL 89 (194)
T ss_pred EEEEEEcCcccccccc-CCEEEEccEEEEEEEEcCCEEEEEEEHHHhhhCchhhccCCCEEEEeEcccC
Confidence 45555556443 22 678999998766542 44444443 35888998888876654
No 53
>PHA02811 putative host range protein; Provisional
Probab=27.80 E-value=94 Score=30.86 Aligned_cols=41 Identities=17% Similarity=0.282 Sum_probs=29.0
Q ss_pred eEEEEEEeCCCCCeeeEEEEeecCccc--C-CCcEEEECCeeecCCC
Q 007406 282 RMTHTFSSKQEASQSSSLNLRIPLWTN--S-NGAKATLNGQSLSLPA 325 (605)
Q Consensus 282 ~V~ltv~~~~~~~~~ftL~LRIP~Wa~--~-~~~~v~VNG~~~~~~~ 325 (605)
.+.|.++.. +...|-+-|| |.|.. . ...++++||.++....
T Consensus 32 ~I~Lk~~~~--Kk~~~i~Il~-PdWseI~evKPI~m~~Ng~~vdv~l 75 (197)
T PHA02811 32 TINIKVNQQ--KKLDFIIILR-PDWTEVRNVKKINMVCNGVVIDTTL 75 (197)
T ss_pred EEEEEeCCc--cEEEEEEEec-cchhhhhhccceEEEECCcEeEEEE
Confidence 566666653 4667888889 99942 1 1578999999987653
No 54
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=27.43 E-value=1.6e+02 Score=35.30 Aligned_cols=58 Identities=22% Similarity=0.426 Sum_probs=43.0
Q ss_pred eEEEEEEeCCCCCeeeEEEEeecCcccCCCcEEEECCeeecCCC-CCCEEEEEeeeCCCCEEEEEe
Q 007406 282 RMTHTFSSKQEASQSSSLNLRIPLWTNSNGAKATLNGQSLSLPA-PGNFISVTQRWSSTDKLTIQL 346 (605)
Q Consensus 282 ~V~ltv~~~~~~~~~ftL~LRIP~Wa~~~~~~v~VNG~~~~~~~-~ggy~~I~R~W~~GD~V~L~l 346 (605)
+++.+|+.+ ...-.|.+-||.- + |.+++||||+++... .++|+-|.-. ++..+|+++.
T Consensus 773 ~i~~~i~~~---~~~~~l~~sipy~-~--GW~~~vdGk~~~~~~~~~~f~g~~l~-~G~h~i~~~y 831 (843)
T PF09586_consen 773 HISGTITAT---SKDGYLVLSIPYD-K--GWKAYVDGKKVEIEKVNGGFMGVPLP-KGEHQIELKY 831 (843)
T ss_pred EEEEEEEec---CCCcEEEEEeccC-C--CCEEEECCEEccHhhhcCeEEEEEEc-CCceEEEEEE
Confidence 677777762 2234788999964 3 799999999998754 7889999877 5555677665
No 55
>cd00100 IL1 Interleukin-1 homologes; Cytokines with various biological functions. Interleukin 1 alpha and beta are also known as hematopoietin and catabolin. This family also contains interleukin-1 receptor antagonists (inhibitors).
Probab=27.09 E-value=39 Score=32.21 Aligned_cols=28 Identities=11% Similarity=0.112 Sum_probs=20.8
Q ss_pred CeeEEEeccCCCeEEEeccccCCCCeEEEE
Q 007406 516 ETISLEAVNQNGCFVYSGVNFNSGASLKLS 545 (605)
Q Consensus 516 ~~vsles~~~pg~~~~~~~~~~~g~~~~~~ 545 (605)
.+.+|||+.+||||+... ......|.+-
T Consensus 103 ~~~~FeSaa~PgWfIsTs--~~~~~PV~l~ 130 (144)
T cd00100 103 NKNYFESAAFPNWFIATK--QEEDKPVFLA 130 (144)
T ss_pred CceEEEEccCCCcEEEec--ccCCeEEEee
Confidence 389999999999999853 1234566665
No 56
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]
Probab=26.78 E-value=44 Score=36.00 Aligned_cols=27 Identities=37% Similarity=0.449 Sum_probs=23.5
Q ss_pred chhHHHHHHHHHcCCHHHHHHHhhccc
Q 007406 35 GMNDVLYRLYTITQDPKHLLLAHLFDK 61 (605)
Q Consensus 35 Gmne~L~~LY~~TGd~~yL~lA~~F~~ 61 (605)
|---++.-||++|||.+||.-|+.|-+
T Consensus 330 GNaYvFLsLyRLT~d~kYlyRA~kFae 356 (403)
T KOG2787|consen 330 GNAYVFLSLYRLTGDMKYLYRAKKFAE 356 (403)
T ss_pred CchhhhHhHHHHcCcHHHHHHHHHHHH
Confidence 333899999999999999999999964
No 57
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=26.61 E-value=55 Score=32.57 Aligned_cols=66 Identities=17% Similarity=0.195 Sum_probs=41.3
Q ss_pred hhhHHHHhCCchHHHHHHHHHHHhhccCeEeecCCCCC----CCCCCCccccccCCCCccccchhhHHHHHHHHHHhcc
Q 007406 90 SQMRYEVTGDPLYKVTGTFFMDIVNASHGYATGGTSAG----EFWSDPKRLASTLGTENEESCTTYNMLKVSRHLFRWT 164 (605)
Q Consensus 90 ~a~~Y~~TGd~~y~~aa~~fw~~v~~~h~y~TGG~g~~----E~f~~p~~L~~~l~~~~~EtCas~nmlkl~~~Lf~~t 164 (605)
.++.|++|||++|+++|+...+... .-.--||+-.. -.|-+.+- ....++.--++|+...-|+.+.
T Consensus 39 l~RAy~~t~d~~Yl~aA~~al~~f~--~~~~~GG~~~~~~~~~~wyeEYp-------~~p~s~VLNGfiysL~GLyd~~ 108 (189)
T PF06662_consen 39 LARAYQLTGDEKYLDAAKKALNSFK--VPVEEGGVLATFKNKYPWYEEYP-------TTPPSYVLNGFIYSLIGLYDYY 108 (189)
T ss_pred HHHHHHhHCCHHHHHHHHHHHHHhc--ChHhhCCeeEEecCCcEeEeecC-------CCCCCEEeehHHHHHHHHHHHH
Confidence 4577999999999999999887652 22234665432 11222111 2334566667888877777765
No 58
>PF00340 IL1: Interleukin-1 / 18; InterPro: IPR000975 Interleukin-1 alpha and interleukin-1 beta (IL-1 alpha and IL-1 beta) are cytokines that participate in the regulation of immune responses, inflammatory reactions, and hematopoiesis []. Two types of IL-1 receptor, each with three extracellular immunoglobulin (Ig)-like domains, limited sequence similarity (28%) and different pharmacological characteristics have been cloned from mouse and human cell lines: these have been termed type I and type II receptors []. The receptors both exist in transmembrane (TM) and soluble forms: the soluble IL-1 receptor is thought to be post-translationally derived from cleavage of the extracellular portion of the membrane receptors. Both IL-1 receptors appear to be well conserved in evolution, and map to the same chromosomal location []. The receptors can both bind all three forms of IL-1 (IL-1 alpha, IL-1 beta and IL-1RA). The crystal structures of IL1A and IL1B [] have been solved, showing them to share the same 12-stranded beta-sheet structure as both the heparin binding growth factors and the Kunitz-type soybean trypsin inhibitors []. The beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel. Several regions, especially the loop between strands 4 and 5, have been implicated in receptor binding. The Vaccinia virus genes B15R and B18R each encode proteins with N-terminal hydrophobic sequences, possible sites for attachment of N-linked carbohydrate and a short C-terminal hydrophobic domain []. These properties are consistent with the mature proteins being either virion, cell surface or secretory glycoproteins. Protein sequence comparisons reveal that the gene products are related to each other (20% identity) and to the Ig superfamily. The highest degree of similarity is to the human and murine interleukin-1 receptors, although both proteins are related to a wide range of Ig superfamily members, including the interleukin-6 receptor. A novel method for virus immune evasion has been proposed in which the product of one or both of these proteins may bind interleukin-1 and/or interleukin-6, preventing these cytokines reaching their natural receptors []. A similar gene product from Cowpox virus (CPV) has also been shown to specifically bind murine IL-1 beta []. This entry represents Interleukin-1. ; GO: 0005615 extracellular space; PDB: 1J0S_A 3F62_B 2VXT_I 1MD6_A 2KKI_A 2L5X_D 2WRY_A 3NJ5_A 8I1B_A 2MIB_A ....
Probab=26.39 E-value=52 Score=30.24 Aligned_cols=28 Identities=18% Similarity=0.304 Sum_probs=20.7
Q ss_pred eeEEEeccCCCeEEEeccccCCCCeEEEEe
Q 007406 517 TISLEAVNQNGCFVYSGVNFNSGASLKLSC 546 (605)
Q Consensus 517 ~vsles~~~pg~~~~~~~~~~~g~~~~~~~ 546 (605)
+-+|||+.+|||||... ...+..|.|.+
T Consensus 80 ~~~FESaa~PgwFIaT~--~~~~~pv~l~~ 107 (120)
T PF00340_consen 80 TSTFESAAYPGWFIATS--PEDNQPVELTK 107 (120)
T ss_dssp EEEEEESSSTTEEEEBE--SSSTEEEEEES
T ss_pred ceEEEEccCCCeEEEec--ccCCceEEEEe
Confidence 44599999999999853 23456777775
No 59
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=26.09 E-value=2.2e+02 Score=32.90 Aligned_cols=136 Identities=18% Similarity=0.156 Sum_probs=71.5
Q ss_pred ccchhHHHHHHHHHcCCH-HHHHHHhhccc---CCcchhhhh---c---CCCCCc--ccccc--ccce--------eehh
Q 007406 33 TGGMNDVLYRLYTITQDP-KHLLLAHLFDK---PCFLGLLAV---Q---ADDISG--FHANT--HIPV--------VIGS 90 (605)
Q Consensus 33 ~GGmne~L~~LY~~TGd~-~yL~lA~~F~~---~~~~~~l~~---~---~D~l~g--~Hant--hiP~--------~~G~ 90 (605)
-|=|.-.|++++.+++.. +|++.|....+ ...++.... . .+.-.| .|.|. .+|- +.|.
T Consensus 507 nGLviSgl~kag~~~~a~~~y~~~a~~~a~fl~k~m~d~~eklliR~scY~ga~g~ve~~n~~~~~~~FldDYAFlI~gL 586 (786)
T KOG2244|consen 507 NGLVISGLAKAGKILKAEPEYTKYAFPVANFLPKDMIDVAEKLLIRGSCYDGASGRVEHSNRPSKAPAFLDDYAFLISGL 586 (786)
T ss_pred cchhhHHHHHHHHHhhcCHHHHHHHHHHHhhhhhhhhchhhhheeecccccCCCcceeccCCccccchhhhhHHHHHHHH
Confidence 355668999999999876 99988876432 222222110 0 011111 25444 2321 4789
Q ss_pred hhHHHHhCCchHHHHHHHHHHHhhccCeEe-ecCCCCCCCCCCCccccccC--CCCccccchh----hHHHHHHHHHHhc
Q 007406 91 QMRYEVTGDPLYKVTGTFFMDIVNASHGYA-TGGTSAGEFWSDPKRLASTL--GTENEESCTT----YNMLKVSRHLFRW 163 (605)
Q Consensus 91 a~~Y~~TGd~~y~~aa~~fw~~v~~~h~y~-TGG~g~~E~f~~p~~L~~~l--~~~~~EtCas----~nmlkl~~~Lf~~ 163 (605)
.++|+.+|+..|++-|...=+.- .+.|= .||.=..|.= .+ +++-.+ +..++|-|+. +|+++ |..+
T Consensus 587 LDlYea~~~~e~LkwA~~LQdtq--dklFWdgggYF~Se~~-~~-~v~vRlkeDhDGAEPs~nSVsahNLvr----L~~~ 658 (786)
T KOG2244|consen 587 LDLYEAGGGIEWLKWAIKLQDTQ--DKLFWDGGGYFISEKT-DE-DVSVRLKEDHDGAEPSGNSVSAHNLVR----LASI 658 (786)
T ss_pred HHHHHccCchHHHHHHHHHHHHH--HHheecCCceeeeecc-CC-CcceeeccccCCCCCCccchhhhhHHH----HHHH
Confidence 99999999998876554433321 11111 2332112221 11 122122 3567888764 67664 4445
Q ss_pred cCCCchHHHHHHH
Q 007406 164 TKEMVYADYYERA 176 (605)
Q Consensus 164 tgD~~YaD~~ERa 176 (605)
.+...|++-.-|.
T Consensus 659 ~~~e~yl~ka~~l 671 (786)
T KOG2244|consen 659 VAAESYLNKAHRL 671 (786)
T ss_pred hhHHHHHHHHHHH
Confidence 5666677666543
No 60
>PRK09289 riboflavin synthase subunit alpha; Provisional
Probab=25.26 E-value=2e+02 Score=28.69 Aligned_cols=58 Identities=16% Similarity=0.293 Sum_probs=39.4
Q ss_pred CeeeEEEEeecCcccC---CCcEEEECCeeecCCC-CCCEEEEE-----------eeeCCCCEEEEEecceeE
Q 007406 294 SQSSSLNLRIPLWTNS---NGAKATLNGQSLSLPA-PGNFISVT-----------QRWSSTDKLTIQLPINLR 351 (605)
Q Consensus 294 ~~~ftL~LRIP~Wa~~---~~~~v~VNG~~~~~~~-~ggy~~I~-----------R~W~~GD~V~L~lpm~lr 351 (605)
+....+.+++|..... -+-.|.|||....... .++.+.+. ..|+.||.|-|+.++--|
T Consensus 115 ~~~~~~~i~~~~~~~~~l~~kgSIavdGvsLTV~~~~~~~f~v~lipeTl~~T~l~~~k~G~~VNlE~D~~~k 187 (194)
T PRK09289 115 GNSVEFRFKAPAELAKYIVEKGSIAVDGVSLTVNEVDGDRFSVNLIPHTLENTTLGEKKVGDRVNLEIDLLAK 187 (194)
T ss_pred CCcEEEEEECChHHhcccccCCEEEEccEEEEEEEEcCCEEEEEEeHHHHhhCccccCCCCCEEEEeEehHHH
Confidence 3456788889865321 1467889998776542 45556655 578999999999886443
No 61
>smart00125 IL1 Interleukin-1 homologues. Cytokines with various biological functions. Interluekin 1 alpha and beta are also known as hematopoietin and catabolin.
Probab=24.69 E-value=45 Score=31.88 Aligned_cols=28 Identities=11% Similarity=0.278 Sum_probs=20.4
Q ss_pred CeeEEEeccCCCeEEEeccccCCCCeEEEE
Q 007406 516 ETISLEAVNQNGCFVYSGVNFNSGASLKLS 545 (605)
Q Consensus 516 ~~vsles~~~pg~~~~~~~~~~~g~~~~~~ 545 (605)
.+.+|||+.+||||+.... .....|.+-
T Consensus 106 ~~~~FeSaa~PgWfIsTs~--~~~~PV~l~ 133 (147)
T smart00125 106 NKVEFESAAHPNWFISTSQ--EEDKPVFLG 133 (147)
T ss_pred CceEEEEccCCCcEEEecc--ccCceEEee
Confidence 4889999999999998431 234456665
No 62
>COG4485 Predicted membrane protein [Function unknown]
Probab=24.65 E-value=2.3e+02 Score=33.84 Aligned_cols=57 Identities=23% Similarity=0.460 Sum_probs=42.7
Q ss_pred eEEEEEEeCCCCCeeeEEEEeecCcccCCCcEEEECCeeecCC-CCCCEEEEEeeeCCCCEEEEEe
Q 007406 282 RMTHTFSSKQEASQSSSLNLRIPLWTNSNGAKATLNGQSLSLP-APGNFISVTQRWSSTDKLTIQL 346 (605)
Q Consensus 282 ~V~ltv~~~~~~~~~ftL~LRIP~Wa~~~~~~v~VNG~~~~~~-~~ggy~~I~R~W~~GD~V~L~l 346 (605)
+|+++-+. .+.-.+-|-||. . .|...++||+.++.. +.+||..|+-. |+..+|+|++
T Consensus 769 ~v~~ty~~----~~~g~I~ltipY--d-KGwsa~~dgK~lkV~kAq~gf~~vk~p-Kg~~~IeLtf 826 (858)
T COG4485 769 GVTITYNK----KSDGYIFLTIPY--D-KGWSAKSDGKKLKVKKAQGGFMGVKAP-KGKGRIELTF 826 (858)
T ss_pred eEEEEEcc----CCCceEEEeccc--C-CCcceeeCCeeeeeeecccceEEEEec-CCCceEEEEE
Confidence 46666554 223368888885 2 278999999999875 48999999987 7777899987
No 63
>PRK13020 riboflavin synthase subunit alpha; Provisional
Probab=24.64 E-value=2.3e+02 Score=28.60 Aligned_cols=55 Identities=18% Similarity=0.315 Sum_probs=34.5
Q ss_pred eeEEEEeecCcc-cC--CCcEEEECCeeecCCC-CCCEEEEE-----------eeeCCCCEEEEEeccee
Q 007406 296 SSSLNLRIPLWT-NS--NGAKATLNGQSLSLPA-PGNFISVT-----------QRWSSTDKLTIQLPINL 350 (605)
Q Consensus 296 ~ftL~LRIP~Wa-~~--~~~~v~VNG~~~~~~~-~ggy~~I~-----------R~W~~GD~V~L~lpm~l 350 (605)
...+.++.|... +. -+-.|.|||.-..... .++.+.++ ..|+.||.|-|+-+|++
T Consensus 21 ~~~l~i~~~~~~~~~l~~g~SIavnGVcLTV~~v~~~~f~~~lipeTl~~T~l~~~~~G~~VNlEral~~ 90 (206)
T PRK13020 21 LNTLEIAFPPELLEGLEIGASVAVNGVCLTVTKIEGDRVFFDVMEETLRLTNLADLRVGDRVNIERSAKF 90 (206)
T ss_pred cEEEEEEeChhHhccCCCCCEEEECCEEEEEEEECCCEEEEEEhHHHHhhCchhhccCCCEEeeEecccC
Confidence 345666667542 10 1568899998776542 34444433 36889999888877765
No 64
>KOG2429 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=22.77 E-value=60 Score=37.25 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=22.9
Q ss_pred chhHHHHHHHHHcCCHHHHHHHhhcc
Q 007406 35 GMNDVLYRLYTITQDPKHLLLAHLFD 60 (605)
Q Consensus 35 Gmne~L~~LY~~TGd~~yL~lA~~F~ 60 (605)
=+.|+.+.||+.|+|+.||++...+.
T Consensus 375 ElvEStyyLYrATkdp~yL~vG~~~l 400 (622)
T KOG2429|consen 375 ELVESTYYLYRATKDPFYLHVGEDML 400 (622)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 35699999999999999999988774
No 65
>PRK13020 riboflavin synthase subunit alpha; Provisional
Probab=22.45 E-value=2.4e+02 Score=28.50 Aligned_cols=59 Identities=15% Similarity=0.148 Sum_probs=39.7
Q ss_pred CeeeEEEEeecCcccC---CCcEEEECCeeecCCC-CCCEEEEE-----------eeeCCCCEEEEEecceeEE
Q 007406 294 SQSSSLNLRIPLWTNS---NGAKATLNGQSLSLPA-PGNFISVT-----------QRWSSTDKLTIQLPINLRT 352 (605)
Q Consensus 294 ~~~ftL~LRIP~Wa~~---~~~~v~VNG~~~~~~~-~ggy~~I~-----------R~W~~GD~V~L~lpm~lr~ 352 (605)
+..+.+.+++|.+... .+..|.|||....... .+..+.+. ..|+.||.|-|+.++--+.
T Consensus 116 ~~~~~~~i~~~~~~~~~i~~kgSIaidGvsLTV~~v~~~~f~v~lIp~Tl~~T~l~~~k~G~~VNiE~D~~~k~ 189 (206)
T PRK13020 116 EENYDIRFRVPPEWMKYIFAKGFIGVNGCSLTVGEVDESEFEVHLIPETLRATNLGAKKVGDLVNIEIDSQTQV 189 (206)
T ss_pred CCCEEEEEEEChHHhcccccCCEEEEeeEEEEEEeEcCCEEEEEEeHHHHhhcccccCCCCCEEEEeEeccchH
Confidence 4567889999987432 1467889998766532 34444443 4678999999998855444
No 66
>PF03287 Pox_C7_F8A: Poxvirus C7/F8A protein; InterPro: IPR004967 This family includes Poxvirus C7 and F8A proteins.; GO: 0016032 viral reproduction
Probab=21.13 E-value=1.4e+02 Score=28.67 Aligned_cols=40 Identities=23% Similarity=0.375 Sum_probs=27.7
Q ss_pred eEEEEEEeCCCCCeeeEEEEeecCccc---CCCcEEEECCeeecCC
Q 007406 282 RMTHTFSSKQEASQSSSLNLRIPLWTN---SNGAKATLNGQSLSLP 324 (605)
Q Consensus 282 ~V~ltv~~~~~~~~~ftL~LRIP~Wa~---~~~~~v~VNG~~~~~~ 324 (605)
.+.|.++.. +...|-+-|| |.|.. -....+++||..+...
T Consensus 32 ~I~lk~~~~--K~i~f~~Il~-pdwseI~~vKpi~~~~Ng~~id~~ 74 (149)
T PF03287_consen 32 TIKLKSKET--KKINFIFILR-PDWSEIDEVKPIRMKLNGKSIDLE 74 (149)
T ss_pred EEEEEeCCc--cEEEEEEEEc-cChhhcccccceEEEECCeEeeEE
Confidence 566666542 4667888889 99943 1147889999988764
No 67
>PLN02741 riboflavin synthase
Probab=20.59 E-value=2.6e+02 Score=27.97 Aligned_cols=61 Identities=11% Similarity=0.075 Sum_probs=0.0
Q ss_pred EEEEeCCCCCeeeEEEEeecCcccC---CCcEEEECCeeecCCC-C--CCEEEEE-----------eeeCCCCEEEEEec
Q 007406 285 HTFSSKQEASQSSSLNLRIPLWTNS---NGAKATLNGQSLSLPA-P--GNFISVT-----------QRWSSTDKLTIQLP 347 (605)
Q Consensus 285 ltv~~~~~~~~~ftL~LRIP~Wa~~---~~~~v~VNG~~~~~~~-~--ggy~~I~-----------R~W~~GD~V~L~lp 347 (605)
+.+.. .+....+.+++|..... ..-.|.|||....... . +..+.|. ..++.||.|-|+.+
T Consensus 110 ~~~~~---~~~~~~~~i~~p~~~~~yi~~KGsIavdGvSLTV~~v~~~~~~f~v~lIP~T~~~T~l~~~k~Gd~VNiE~D 186 (194)
T PLN02741 110 VEQEP---EGDSLWVKVKADPELLKYIVPKGFIAVDGTSLTVVDVDDEEGCFNFMLVPYTQQKVVIPLKKVGDKVNLEVD 186 (194)
T ss_pred EEEEE---CCCcEEEEEEECHHHHcccccCcEEEEeeEEEEEEEeecCCCEEEEEEcHHHHhhcccccCCCCCEEEEeEE
Q ss_pred c
Q 007406 348 I 348 (605)
Q Consensus 348 m 348 (605)
+
T Consensus 187 ~ 187 (194)
T PLN02741 187 I 187 (194)
T ss_pred c
No 68
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=20.52 E-value=4.9e+02 Score=21.44 Aligned_cols=26 Identities=15% Similarity=0.254 Sum_probs=18.7
Q ss_pred CeeeEEEEeecCcccCCCcEEEECCeeecCC
Q 007406 294 SQSSSLNLRIPLWTNSNGAKATLNGQSLSLP 324 (605)
Q Consensus 294 ~~~ftL~LRIP~Wa~~~~~~v~VNG~~~~~~ 324 (605)
..++.|.+--|+ ..++++||+++...
T Consensus 37 ~~~~~i~iGna~-----~v~v~~nG~~~~~~ 62 (77)
T PF13464_consen 37 KEPFRIRIGNAG-----AVEVTVNGKPVDLL 62 (77)
T ss_pred CCCEEEEEeCCC-----cEEEEECCEECCCC
Confidence 345666665554 68999999999863
Done!