Your job contains 1 sequence.
>007407
MVMLGSKGRLDFLNSKPPANYIAGAGRGASSFTTRSDIGRTRTAPPSTIIGLPRPKPRDD
DGEDDNDDDGNNGYQQNFDHFEGNDAGLFVNLEYDDEDKEADAVWESIDKLMDSRRKSRR
EARLEEEIKNYRYKNPTIREEFADLKGKLSTVKAKEWERIPEIGDYSRRNKRKRFDSFVP
VPDSLLQKARQEQQHVIALDPSSRAAGGAESVVTDLTAVGEGRGKILTLKLDGISDSVTG
LTVFDPSGYLTRMNDLKITTNSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANE
EAAARKLITKGCNMCPKNEDVWLEACRLARPDEAKSVVAKGVRQIPKSANKIRALRMALD
EIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALVRLETYGVARSVLNKARK
KLPKERAIWIAAAKLEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSV
VTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLK
AAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIP
NSEEI
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 007407
(605 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
MGI|MGI:1922946 - symbol:Prpf6 "PRP6 pre-mRNA splicing fa... 1053 1.8e-142 2
RGD|1307103 - symbol:Prpf6 "PRP6 pre-mRNA processing fact... 1053 1.8e-142 2
UNIPROTKB|O94906 - symbol:PRPF6 "Pre-mRNA-processing fact... 1053 1.8e-142 2
UNIPROTKB|F1N9U0 - symbol:PRPF6 "Uncharacterized protein"... 1051 2.4e-142 2
UNIPROTKB|E2RPW8 - symbol:PRPF6 "Uncharacterized protein"... 1050 3.0e-142 2
UNIPROTKB|Q2KJJ0 - symbol:PRPF6 "Pre-mRNA-processing fact... 1050 3.0e-142 2
ZFIN|ZDB-GENE-030131-2575 - symbol:prpf6 "PRP6 pre-mRNA p... 1037 3.4e-141 2
TAIR|locus:2128751 - symbol:EMB2770 "EMBRYO DEFECTIVE 277... 1133 6.4e-115 1
UNIPROTKB|I3L7Q4 - symbol:PRPF6 "Uncharacterized protein"... 764 3.8e-112 2
FB|FBgn0036828 - symbol:CG6841 species:7227 "Drosophila m... 989 1.2e-99 1
DICTYBASE|DDB_G0272374 - symbol:prpf6 "pre-mRNA processin... 923 1.1e-92 1
POMBASE|SPBC6B1.07 - symbol:prp1 "U4/U6 x U5 tri-snRNP co... 791 1.1e-78 1
WB|WBGene00013343 - symbol:prp-6 species:6239 "Caenorhabd... 760 2.1e-75 1
ASPGD|ASPL0000068414 - symbol:AN7447 species:162425 "Emer... 707 8.9e-70 1
SGD|S000000259 - symbol:PRP6 "Splicing factor" species:49... 267 9.3e-39 3
CGD|CAL0001343 - symbol:orf19.6356 species:5476 "Candida ... 362 8.1e-33 2
UNIPROTKB|Q59PD7 - symbol:PRP6 "Putative uncharacterized ... 362 8.1e-33 2
TAIR|locus:2121214 - symbol:BGAL14 "beta-galactosidase 14... 317 1.7e-31 2
ASPGD|ASPL0000053069 - symbol:AN1259 species:162425 "Emer... 153 2.3e-07 1
UNIPROTKB|F1S842 - symbol:LOC100157027 "Uncharacterized p... 144 7.7e-06 1
UNIPROTKB|F1S843 - symbol:LOC100157027 "Uncharacterized p... 144 7.8e-06 1
UNIPROTKB|A7MB10 - symbol:PDCD11 "Protein RRP5 homolog" s... 152 1.6e-05 2
UNIPROTKB|G5E5C4 - symbol:PDCD11 "Protein RRP5 homolog" s... 152 1.6e-05 2
MGI|MGI:1341788 - symbol:Pdcd11 "programmed cell death 11... 148 0.00014 3
>MGI|MGI:1922946 [details] [associations]
symbol:Prpf6 "PRP6 pre-mRNA splicing factor 6 homolog
(yeast)" species:10090 "Mus musculus" [GO:0000244 "assembly of
spliceosomal tri-snRNP" evidence=ISO] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IEA] [GO:0003713 "transcription
coactivator activity" evidence=ISO] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005682 "U5 snRNP" evidence=ISO] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006403 "RNA localization" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0043021
"ribonucleoprotein complex binding" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0071001 "U4/U6 snRNP" evidence=ISO] [GO:0071013 "catalytic step
2 spliceosome" evidence=ISO] InterPro:IPR003107 InterPro:IPR010491
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
Pfam:PF06424 Pfam:PF13181 SMART:SM00386 MGI:MGI:1922946
GO:GO:0005634 GO:GO:0016607 GO:GO:0045944 GO:GO:0005682
GO:GO:0003723 GO:GO:0003713 eggNOG:COG0457 Gene3D:1.25.40.10
GO:GO:0050681 GO:GO:0043021 GO:GO:0000398 GO:GO:0071013
GO:GO:0046540 EMBL:CH466626 GO:GO:0006403 ChiTaRS:PRPF6
GO:GO:0071001 HOGENOM:HOG000116247 KO:K12855 OMA:IWLRAAY
InterPro:IPR027108 PANTHER:PTHR11246:SF1 CTD:24148
GeneTree:ENSGT00550000075016 HOVERGEN:HBG023330 EMBL:BC005801
EMBL:BC014869 EMBL:BC023691 EMBL:BC025030 EMBL:AK011639
EMBL:AK145461 EMBL:AK081998 EMBL:AL844529 IPI:IPI00130409
IPI:IPI00229813 RefSeq:NP_598462.1 UniGene:Mm.292001
ProteinModelPortal:Q91YR7 SMR:Q91YR7 STRING:Q91YR7
PhosphoSite:Q91YR7 PaxDb:Q91YR7 PRIDE:Q91YR7
Ensembl:ENSMUST00000002529 Ensembl:ENSMUST00000136481 GeneID:68879
KEGG:mmu:68879 UCSC:uc008omy.1 InParanoid:Q3ULJ7 NextBio:328105
Bgee:Q91YR7 CleanEx:MM_PRPF6 Genevestigator:Q91YR7
GermOnline:ENSMUSG00000002455 Uniprot:Q91YR7
Length = 941
Score = 1053 (375.7 bits), Expect = 1.8e-142, Sum P(2) = 1.8e-142
Identities = 211/406 (51%), Positives = 274/406 (67%)
Query: 215 DLTAVGEGRGKILTLKLDGISDSVTGLTVFDPSGYLTRMNDLKITTNSELRDILKARKIV 274
D+ +G+ R ++ ++L +SDSV+G TV DP GYLT +N + T ++ DI KAR ++
Sbjct: 239 DMRKIGQARNTLMDMRLSQVSDSVSGQTVVDPKGYLTDLNSMIPTHGGDINDIKKARLLL 298
Query: 275 RAVTKNSPKKPLGWIQXXXXXXXXXXXXXXXKLITKGCNMCPKNEDVWLEACRLARPDEA 334
++V + +P P WI LI KG MCPK+EDVWLEA RL D A
Sbjct: 299 KSVRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWLEAARLQPGDTA 358
Query: 335 KSVVAKGVRQIPKSAN--------------KIRALRMALDEIPDSVRLWKALVEISSEEE 380
K+VVA+ VR +P+S K R LR AL+ +P+SVRLWKA VE+ E+
Sbjct: 359 KAVVAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELEEPED 418
Query: 381 ARILLHRAVECCPLDVELWLALVRLETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANG 439
ARI+L RAVECCP VELWLAL RLETY AR VLNKAR+ +P +R IWI AAKLE ANG
Sbjct: 419 ARIMLSRAVECCPTSVELWLALARLETYENARKVLNKARENIPTDRHIWITAAKLEEANG 478
Query: 440 NTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEED 499
NT MV KII+R I +L+ V I+R+ W+++AE DRAGSV TC A++ I IG++EED
Sbjct: 479 NTQMVEKIIDRAITSLRANGVEINREQWIQDAEECDRAGSVATCQAVMRAVIGIGIEEED 538
Query: 500 KKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLR 559
+K TW+ D + C ++E ARAI++ A VF +KK++WL+AA EK++G RESL ALL+
Sbjct: 539 RKHTWMEDADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQ 598
Query: 560 KAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSEEI 605
+AV +CP+AEVLWLMGAK KWLAGDVPA R IL A+ A PNSEEI
Sbjct: 599 RAVAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEI 644
Score = 361 (132.1 bits), Expect = 1.8e-142, Sum P(2) = 1.8e-142
Identities = 81/209 (38%), Positives = 114/209 (54%)
Query: 6 SKGRLDFLNSKPPANYIAGAGRGASSFTTRSDIGRTRTA-PPSTIIGLPRPKPRXXXXXX 64
+K + FL P Y+ G GRGA+ FTTRSDIG R A P P P R
Sbjct: 2 NKKKKPFLGMPAPLGYVPGLGRGATGFTTRSDIGPARDANDPVDDRHAP-PGKRTVGDQM 60
Query: 65 XXXXXXXXXYQQ----NFDHFEGNDAGLFVNLEYDDEDKEADAVWESIDKLMDSRRKSRR 120
+ N+D F G LF + Y+ +D+EADA++ ++DK MD RRK RR
Sbjct: 61 KKNQAADDDDEDLNDTNYDEFNGYAGSLFSSGPYEKDDEEADAIYAALDKRMDERRKERR 120
Query: 121 EARLEEEIKNYRYKNPTIREEFADLKGKLSTVKAKEWERIPEIGDY-SRRNKRKRFDSFV 179
E R +EEI+ YR + P I+++F+DLK KL+ V +EW IPE+GD ++R + R++
Sbjct: 121 EQREKEEIEKYRMERPKIQQQFSDLKRKLAEVTEEEWLSIPEVGDARNKRQRNPRYEKLT 180
Query: 180 PVPDSLLQKARQEQQHVIALDPSSRAAGG 208
PVPDS K Q ++ ++DP GG
Sbjct: 181 PVPDSFFAKHLQTGENHTSVDPRQTQFGG 209
Score = 152 (58.6 bits), Expect = 2.4e-41, Sum P(2) = 2.4e-41
Identities = 61/230 (26%), Positives = 103/230 (44%)
Query: 355 LRMALDEIPDSVRLW----KALVEISSEEEARILLHRAVECCPLDVELWLALVRLET--- 407
L+ A+ P + LW K+ AR +L A + P E+WLA V+LE+
Sbjct: 597 LQRAVAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENN 656
Query: 408 -YGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRD 465
Y AR +L KAR P R +++ + KLE GN S ++ E +R + +
Sbjct: 657 EYERARRLLAKARSSAPTAR-VFMKSVKLEWVLGNISAAQELCEEALRHYEDFPKL---- 711
Query: 466 TWMKEAEVADRAGSVVTCVAIITNTIEIGVDE-EDKKRTWV--ADVEECKKRGSIETARA 522
WM + ++ ++ G ++ N G+ + W+ + +EE K G + ARA
Sbjct: 712 -WMMKGQIEEQ-GELMEKAREAYNQ---GLKKCPHSTPLWLLLSRLEE--KIGQLTRARA 764
Query: 523 IFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLW 572
I + +WL++ +LE G + L+ KA+ CP + +LW
Sbjct: 765 ILEKSRLKNPKNPGLWLESVRLEYRAGLKNIANTLMAKALQECPNSGILW 814
Score = 145 (56.1 bits), Expect = 1.3e-40, Sum P(2) = 1.3e-40
Identities = 63/255 (24%), Positives = 102/255 (40%)
Query: 358 ALDEIPDSVRLW--KALVEIS--SEEEARILLHRAVECCPLDVELWLALVRLETYG---- 409
AL P +W A E + + E LL RAV CP LWL + +
Sbjct: 566 ALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSKWLAGDVP 625
Query: 410 VARSVLNKARKKLPKERAIWIAAAKLEANGNTSMVGKIIERGIRAL-QGEEVVIDRDTWM 468
ARS+L A + P IW+AA KLE+ N ER R L + +M
Sbjct: 626 AARSILALAFQANPNSEEIWLAAVKLESENNE------YERARRLLAKARSSAPTARVFM 679
Query: 469 KEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSI-ETARAIFSPA 527
K ++ G++ + + ED + W+ + +++G + E AR ++
Sbjct: 680 KSVKLEWVLGNISAAQELCEEALR---HYEDFPKLWMMK-GQIEEQGELMEKAREAYNQG 735
Query: 528 CTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPA 587
+WL ++LE+ G A+L K+ P+ LWL + ++ AG
Sbjct: 736 LKKCPHSTPLWLLLSRLEEKIGQLTRARAILEKSRLKNPKNPGLWLESVRLEYRAGLKNI 795
Query: 588 TRDILQEAYAAIPNS 602
++ +A PNS
Sbjct: 796 ANTLMAKALQECPNS 810
Score = 107 (42.7 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
Identities = 55/243 (22%), Positives = 97/243 (39%)
Query: 241 LTVFDPSGYLTRMNDLKITTNSELRDILKARKIVRAVTKNSPKKPLGWIQXXXXXXXXXX 300
L VF PS + N R+ L+A + RAV + PK + W+
Sbjct: 567 LQVF-PSKKSVWLRAAYFEKNHGTRESLEAL-LQRAVA-HCPKAEVLWLMGAKSKWLAGD 623
Query: 301 XXXXXKLITKGCNMCPKNEDVWLEACRLARPDEAKSVVAKGVRQIPKSANKIRALRMALD 360
++ P +E++WL A +L + + + R + K+ + R+ +
Sbjct: 624 VPAARSILALAFQANPNSEEIWLAAVKL---ESENNEYERARRLLAKARSSAPTARVFMK 680
Query: 361 EIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALVRLETYGV----ARSVLN 416
SV+L L IS+ +E R E P +LW+ ++E G AR N
Sbjct: 681 ----SVKLEWVLGNISAAQELCEEALRHYEDFP---KLWMMKGQIEEQGELMEKAREAYN 733
Query: 417 KARKKLPKERAIWIAAAKLEAN-GNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVAD 475
+ KK P +W+ ++LE G + I+E+ L+ + + W++ +
Sbjct: 734 QGLKKCPHSTPLWLLLSRLEEKIGQLTRARAILEKS--RLKNPK---NPGLWLESVRLEY 788
Query: 476 RAG 478
RAG
Sbjct: 789 RAG 791
Score = 87 (35.7 bits), Expect = 1.6e-34, Sum P(2) = 1.6e-34
Identities = 44/165 (26%), Positives = 70/165 (42%)
Query: 257 KITTNSELRDILKARKIVRAVTKNSPKK-PLGWIQXXXXXXXXXXXXXXXKLITKGCNMC 315
+I EL + KAR+ K P PL W+ ++ K
Sbjct: 717 QIEEQGELME--KAREAYNQGLKKCPHSTPL-WLLLSRLEEKIGQLTRARAILEKSRLKN 773
Query: 316 PKNEDVWLEACRLARPDEAKSVVAKGVRQIPKSANKIRALRMALDEIPDSVRLWKALVEI 375
PKN +WLE+ RL E ++ G++ I AN + A AL E P+S LW V +
Sbjct: 774 PKNPGLWLESVRL----EYRA----GLKNI---ANTLMA--KALQECPNSGILWSEAVFL 820
Query: 376 SSEEEARILLHRAVECCPLDVELWLALVRLETYGVARSVLNKARK 420
+ + + A++ C D + LA+ +L + R + KAR+
Sbjct: 821 EARPQRKTKSVDALKKCEHDPHVLLAVAKL--FWSERKI-TKARE 862
Score = 80 (33.2 bits), Expect = 8.5e-34, Sum P(2) = 8.5e-34
Identities = 43/192 (22%), Positives = 77/192 (40%)
Query: 263 ELRDILKARKIVRAVTKNSPKKPLGWIQXXXXXXXXXXXXXXXKLITKGCNMCPKNEDVW 322
++ + +AR I+ +PK P W++ L+ K CP + +W
Sbjct: 755 KIGQLTRARAILEKSRLKNPKNPGLWLESVRLEYRAGLKNIANTLMAKALQECPNSGILW 814
Query: 323 LEACRL-ARPDEAKSVVAKGVRQIPKSANKIRALRMALDEIPDSVRLWKALVEISSEEEA 381
EA L ARP + K+ K V + K + L +A+ ++ W +I+ +A
Sbjct: 815 SEAVFLEARP-QRKT---KSVDALKKCEHDPHVL-LAVAKL-----FWSER-KIT---KA 860
Query: 382 RILLHRAVECCPLDV-ELWLALVRLETYGVARSVLNKARKKL----PKERAIWIAAAKLE 436
R HR V+ D+ + W + E + RK+ P+ +W A +K
Sbjct: 861 REWFHRTVKI-DSDLGDAWAFFYKFELQHGTEEQQEEVRKRCENAEPRHGELWCAVSKDI 919
Query: 437 ANGNTSMVGKII 448
N +G+I+
Sbjct: 920 TNWQRK-IGEIL 930
>RGD|1307103 [details] [associations]
symbol:Prpf6 "PRP6 pre-mRNA processing factor 6 homolog (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0000244
"assembly of spliceosomal tri-snRNP" evidence=ISO] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=IEA;ISO] [GO:0003723
"RNA binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005682 "U5 snRNP" evidence=IEA;ISO] [GO:0006403 "RNA
localization" evidence=IEA;ISO] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0043021 "ribonucleoprotein complex binding"
evidence=IEA;ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=IEA;ISO] [GO:0050681
"androgen receptor binding" evidence=IEA;ISO] [GO:0071001 "U4/U6
snRNP" evidence=IEA;ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA;ISO] InterPro:IPR003107 InterPro:IPR010491
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF06424 PROSITE:PS50293
SMART:SM00386 RGD:1307103 GO:GO:0016607 GO:GO:0045944 GO:GO:0005682
GO:GO:0003723 GO:GO:0003713 eggNOG:COG0457 Gene3D:1.25.40.10
GO:GO:0043021 GO:GO:0000398 GO:GO:0071013 GO:GO:0046540
GO:GO:0006403 GO:GO:0071001 HOGENOM:HOG000116247 KO:K12855
OMA:IWLRAAY InterPro:IPR027108 PANTHER:PTHR11246:SF1 CTD:24148
GeneTree:ENSGT00550000075016 HOVERGEN:HBG023330 OrthoDB:EOG4FTVZW
EMBL:CH474066 EMBL:BC128779 IPI:IPI00368842 RefSeq:NP_001073234.1
UniGene:Rn.17062 ProteinModelPortal:A1A5S1 STRING:A1A5S1
Ensembl:ENSRNOT00000021722 GeneID:366276 KEGG:rno:366276
UCSC:RGD:1307103 InParanoid:A1A5S1 NextBio:689115
Genevestigator:A1A5S1 Uniprot:A1A5S1
Length = 941
Score = 1053 (375.7 bits), Expect = 1.8e-142, Sum P(2) = 1.8e-142
Identities = 211/406 (51%), Positives = 274/406 (67%)
Query: 215 DLTAVGEGRGKILTLKLDGISDSVTGLTVFDPSGYLTRMNDLKITTNSELRDILKARKIV 274
D+ +G+ R ++ ++L +SDSV+G TV DP GYLT +N + T ++ DI KAR ++
Sbjct: 239 DMRKIGQARNTLMDMRLSQVSDSVSGQTVVDPKGYLTDLNSMIPTHGGDINDIKKARLLL 298
Query: 275 RAVTKNSPKKPLGWIQXXXXXXXXXXXXXXXKLITKGCNMCPKNEDVWLEACRLARPDEA 334
++V + +P P WI LI KG MCPK+EDVWLEA RL D A
Sbjct: 299 KSVRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWLEAARLQPGDTA 358
Query: 335 KSVVAKGVRQIPKSAN--------------KIRALRMALDEIPDSVRLWKALVEISSEEE 380
K+VVA+ VR +P+S K R LR AL+ +P+SVRLWKA VE+ E+
Sbjct: 359 KAVVAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELEEPED 418
Query: 381 ARILLHRAVECCPLDVELWLALVRLETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANG 439
ARI+L RAVECCP VELWLAL RLETY AR VLNKAR+ +P +R IWI AAKLE ANG
Sbjct: 419 ARIMLSRAVECCPTSVELWLALARLETYENARKVLNKARENIPTDRHIWITAAKLEEANG 478
Query: 440 NTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEED 499
NT MV KII+R I +L+ V I+R+ W+++AE DRAGSV TC A++ I IG++EED
Sbjct: 479 NTQMVEKIIDRAITSLRANGVEINREQWIQDAEECDRAGSVATCQAVMRAVIGIGIEEED 538
Query: 500 KKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLR 559
+K TW+ D + C ++E ARAI++ A VF +KK++WL+AA EK++G RESL ALL+
Sbjct: 539 RKHTWMEDADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQ 598
Query: 560 KAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSEEI 605
+AV +CP+AEVLWLMGAK KWLAGDVPA R IL A+ A PNSEEI
Sbjct: 599 RAVAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEI 644
Score = 361 (132.1 bits), Expect = 1.8e-142, Sum P(2) = 1.8e-142
Identities = 81/209 (38%), Positives = 114/209 (54%)
Query: 6 SKGRLDFLNSKPPANYIAGAGRGASSFTTRSDIGRTRTA-PPSTIIGLPRPKPRXXXXXX 64
+K + FL P Y+ G GRGA+ FTTRSDIG R A P P P R
Sbjct: 2 NKKKKPFLGMPAPLGYVPGLGRGATGFTTRSDIGPARDANDPVDDRHAP-PGKRTVGDQM 60
Query: 65 XXXXXXXXXYQQ----NFDHFEGNDAGLFVNLEYDDEDKEADAVWESIDKLMDSRRKSRR 120
+ N+D F G LF + Y+ +D+EADA++ ++DK MD RRK RR
Sbjct: 61 KKNQAADDDDEDLNDTNYDEFNGYAGSLFSSGPYEKDDEEADAIYAALDKRMDERRKERR 120
Query: 121 EARLEEEIKNYRYKNPTIREEFADLKGKLSTVKAKEWERIPEIGDY-SRRNKRKRFDSFV 179
E R +EEI+ YR + P I+++F+DLK KL+ V +EW IPE+GD ++R + R++
Sbjct: 121 EQREKEEIEKYRMERPKIQQQFSDLKRKLAEVTEEEWLSIPEVGDARNKRQRNPRYEKLT 180
Query: 180 PVPDSLLQKARQEQQHVIALDPSSRAAGG 208
PVPDS K Q ++ ++DP GG
Sbjct: 181 PVPDSFFAKHLQTGENHTSVDPRQTQFGG 209
Score = 149 (57.5 bits), Expect = 4.9e-41, Sum P(2) = 4.9e-41
Identities = 60/230 (26%), Positives = 103/230 (44%)
Query: 355 LRMALDEIPDSVRLW----KALVEISSEEEARILLHRAVECCPLDVELWLALVRLET--- 407
L+ A+ P + LW K+ AR +L A + P E+WLA V+LE+
Sbjct: 597 LQRAVAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENN 656
Query: 408 -YGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRD 465
Y AR +L KAR P R +++ + KLE GN + ++ E +R + +
Sbjct: 657 EYERARRLLAKARSSAPTAR-VFMKSVKLEWVLGNITAAQELCEEALRHYEDFPKL---- 711
Query: 466 TWMKEAEVADRAGSVVTCVAIITNTIEIGVDE-EDKKRTWV--ADVEECKKRGSIETARA 522
WM + ++ ++ G ++ N G+ + W+ + +EE K G + ARA
Sbjct: 712 -WMMKGQIEEQ-GELMERAREAYNQ---GLKKCPHSTPLWLLLSRLEE--KIGQLTRARA 764
Query: 523 IFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLW 572
I + +WL++ +LE G + L+ KA+ CP + +LW
Sbjct: 765 ILEKSRLKNPKNPGLWLESVRLEYRAGLKNIANTLMAKALQECPNSGILW 814
Score = 147 (56.8 bits), Expect = 7.9e-41, Sum P(2) = 7.9e-41
Identities = 63/255 (24%), Positives = 102/255 (40%)
Query: 358 ALDEIPDSVRLW--KALVEIS--SEEEARILLHRAVECCPLDVELWLALVRLETYG---- 409
AL P +W A E + + E LL RAV CP LWL + +
Sbjct: 566 ALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSKWLAGDVP 625
Query: 410 VARSVLNKARKKLPKERAIWIAAAKLEANGNTSMVGKIIERGIRAL-QGEEVVIDRDTWM 468
ARS+L A + P IW+AA KLE+ N ER R L + +M
Sbjct: 626 AARSILALAFQANPNSEEIWLAAVKLESENNE------YERARRLLAKARSSAPTARVFM 679
Query: 469 KEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSI-ETARAIFSPA 527
K ++ G++ + + ED + W+ + +++G + E AR ++
Sbjct: 680 KSVKLEWVLGNITAAQELCEEALR---HYEDFPKLWMMK-GQIEEQGELMERAREAYNQG 735
Query: 528 CTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPA 587
+WL ++LE+ G A+L K+ P+ LWL + ++ AG
Sbjct: 736 LKKCPHSTPLWLLLSRLEEKIGQLTRARAILEKSRLKNPKNPGLWLESVRLEYRAGLKNI 795
Query: 588 TRDILQEAYAAIPNS 602
++ +A PNS
Sbjct: 796 ANTLMAKALQECPNS 810
Score = 104 (41.7 bits), Expect = 2.6e-36, Sum P(2) = 2.6e-36
Identities = 54/243 (22%), Positives = 97/243 (39%)
Query: 241 LTVFDPSGYLTRMNDLKITTNSELRDILKARKIVRAVTKNSPKKPLGWIQXXXXXXXXXX 300
L VF PS + N R+ L+A + RAV + PK + W+
Sbjct: 567 LQVF-PSKKSVWLRAAYFEKNHGTRESLEAL-LQRAVA-HCPKAEVLWLMGAKSKWLAGD 623
Query: 301 XXXXXKLITKGCNMCPKNEDVWLEACRLARPDEAKSVVAKGVRQIPKSANKIRALRMALD 360
++ P +E++WL A +L + + + R + K+ + R+ +
Sbjct: 624 VPAARSILALAFQANPNSEEIWLAAVKL---ESENNEYERARRLLAKARSSAPTARVFMK 680
Query: 361 EIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALVRLETYGV----ARSVLN 416
SV+L L I++ +E R E P +LW+ ++E G AR N
Sbjct: 681 ----SVKLEWVLGNITAAQELCEEALRHYEDFP---KLWMMKGQIEEQGELMERAREAYN 733
Query: 417 KARKKLPKERAIWIAAAKLEAN-GNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVAD 475
+ KK P +W+ ++LE G + I+E+ L+ + + W++ +
Sbjct: 734 QGLKKCPHSTPLWLLLSRLEEKIGQLTRARAILEKS--RLKNPK---NPGLWLESVRLEY 788
Query: 476 RAG 478
RAG
Sbjct: 789 RAG 791
Score = 84 (34.6 bits), Expect = 3.2e-34, Sum P(2) = 3.2e-34
Identities = 43/165 (26%), Positives = 70/165 (42%)
Query: 257 KITTNSELRDILKARKIVRAVTKNSPKK-PLGWIQXXXXXXXXXXXXXXXKLITKGCNMC 315
+I EL + +AR+ K P PL W+ ++ K
Sbjct: 717 QIEEQGELME--RAREAYNQGLKKCPHSTPL-WLLLSRLEEKIGQLTRARAILEKSRLKN 773
Query: 316 PKNEDVWLEACRLARPDEAKSVVAKGVRQIPKSANKIRALRMALDEIPDSVRLWKALVEI 375
PKN +WLE+ RL E ++ G++ I AN + A AL E P+S LW V +
Sbjct: 774 PKNPGLWLESVRL----EYRA----GLKNI---ANTLMA--KALQECPNSGILWSEAVFL 820
Query: 376 SSEEEARILLHRAVECCPLDVELWLALVRLETYGVARSVLNKARK 420
+ + + A++ C D + LA+ +L + R + KAR+
Sbjct: 821 EARPQRKTKSVDALKKCEHDPHVLLAVAKL--FWSERKI-TKARE 862
Score = 80 (33.2 bits), Expect = 8.5e-34, Sum P(2) = 8.5e-34
Identities = 43/192 (22%), Positives = 77/192 (40%)
Query: 263 ELRDILKARKIVRAVTKNSPKKPLGWIQXXXXXXXXXXXXXXXKLITKGCNMCPKNEDVW 322
++ + +AR I+ +PK P W++ L+ K CP + +W
Sbjct: 755 KIGQLTRARAILEKSRLKNPKNPGLWLESVRLEYRAGLKNIANTLMAKALQECPNSGILW 814
Query: 323 LEACRL-ARPDEAKSVVAKGVRQIPKSANKIRALRMALDEIPDSVRLWKALVEISSEEEA 381
EA L ARP + K+ K V + K + L +A+ ++ W +I+ +A
Sbjct: 815 SEAVFLEARP-QRKT---KSVDALKKCEHDPHVL-LAVAKL-----FWSER-KIT---KA 860
Query: 382 RILLHRAVECCPLDV-ELWLALVRLETYGVARSVLNKARKKL----PKERAIWIAAAKLE 436
R HR V+ D+ + W + E + RK+ P+ +W A +K
Sbjct: 861 REWFHRTVKI-DSDLGDAWAFFYKFELQHGTEEQQEEVRKRCENAEPRHGELWCAVSKDI 919
Query: 437 ANGNTSMVGKII 448
N +G+I+
Sbjct: 920 TNWQRK-IGEIL 930
>UNIPROTKB|O94906 [details] [associations]
symbol:PRPF6 "Pre-mRNA-processing factor 6" species:9606
"Homo sapiens" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=NAS] [GO:0000375 "RNA
splicing, via transesterification reactions" evidence=NAS]
[GO:0000245 "spliceosomal complex assembly" evidence=NAS]
[GO:0008380 "RNA splicing" evidence=NAS;TAS] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0003713 "transcription
coactivator activity" evidence=IGI] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0006403 "RNA
localization" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0050681 "androgen receptor binding" evidence=IPI] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0043021 "ribonucleoprotein complex binding" evidence=IDA]
[GO:0005682 "U5 snRNP" evidence=IDA] [GO:0046540 "U4/U6 x U5
tri-snRNP complex" evidence=IDA] [GO:0071001 "U4/U6 snRNP"
evidence=IDA] [GO:0000244 "assembly of spliceosomal tri-snRNP"
evidence=IC;IMP] Reactome:REACT_71 InterPro:IPR003107
InterPro:IPR010491 InterPro:IPR011990 InterPro:IPR013026
InterPro:IPR019734 Pfam:PF06424 Pfam:PF13181 SMART:SM00386
GO:GO:0005654 GO:GO:0016607 Reactome:REACT_1675 GO:GO:0045944
GO:GO:0005682 GO:GO:0000244 GO:GO:0003723 Orphanet:791
EMBL:AL118506 GO:GO:0003713 eggNOG:COG0457 Gene3D:1.25.40.10
GO:GO:0043021 GO:GO:0071013 GO:GO:0000245 GO:GO:0046540
GO:GO:0006403 ChiTaRS:PRPF6 GO:GO:0071001 KO:K12855 OMA:IWLRAAY
InterPro:IPR027108 PANTHER:PTHR11246:SF1 CTD:24148
HOVERGEN:HBG023330 OrthoDB:EOG4FTVZW EMBL:AB019219 EMBL:AF221842
EMBL:AF026031 EMBL:AK001554 EMBL:AK314310 EMBL:AL356790
EMBL:AL355803 EMBL:BC001666 EMBL:AL137320 IPI:IPI00305068
PIR:T46386 RefSeq:NP_036601.2 UniGene:Hs.31334
ProteinModelPortal:O94906 SMR:O94906 DIP:DIP-29006N IntAct:O94906
MINT:MINT-260551 STRING:O94906 PhosphoSite:O94906 PaxDb:O94906
PeptideAtlas:O94906 PRIDE:O94906 Ensembl:ENST00000266079
Ensembl:ENST00000535781 GeneID:24148 KEGG:hsa:24148 UCSC:uc002yho.3
GeneCards:GC20P062612 HGNC:HGNC:15860 HPA:HPA047106 MIM:613979
MIM:613983 neXtProt:NX_O94906 PharmGKB:PA25682 InParanoid:O94906
PhylomeDB:O94906 GenomeRNAi:24148 NextBio:46847 Bgee:O94906
CleanEx:HS_PRPF6 Genevestigator:O94906 GermOnline:ENSG00000101161
Uniprot:O94906
Length = 941
Score = 1053 (375.7 bits), Expect = 1.8e-142, Sum P(2) = 1.8e-142
Identities = 211/406 (51%), Positives = 274/406 (67%)
Query: 215 DLTAVGEGRGKILTLKLDGISDSVTGLTVFDPSGYLTRMNDLKITTNSELRDILKARKIV 274
D+ +G+ R ++ ++L +SDSV+G TV DP GYLT +N + T ++ DI KAR ++
Sbjct: 239 DMRKIGQARNTLMDMRLSQVSDSVSGQTVVDPKGYLTDLNSMIPTHGGDINDIKKARLLL 298
Query: 275 RAVTKNSPKKPLGWIQXXXXXXXXXXXXXXXKLITKGCNMCPKNEDVWLEACRLARPDEA 334
++V + +P P WI LI KG MCPK+EDVWLEA RL D A
Sbjct: 299 KSVRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWLEAARLQPGDTA 358
Query: 335 KSVVAKGVRQIPKSAN--------------KIRALRMALDEIPDSVRLWKALVEISSEEE 380
K+VVA+ VR +P+S K R LR AL+ +P+SVRLWKA VE+ E+
Sbjct: 359 KAVVAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELEEPED 418
Query: 381 ARILLHRAVECCPLDVELWLALVRLETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANG 439
ARI+L RAVECCP VELWLAL RLETY AR VLNKAR+ +P +R IWI AAKLE ANG
Sbjct: 419 ARIMLSRAVECCPTSVELWLALARLETYENARKVLNKARENIPTDRHIWITAAKLEEANG 478
Query: 440 NTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEED 499
NT MV KII+R I +L+ V I+R+ W+++AE DRAGSV TC A++ I IG++EED
Sbjct: 479 NTQMVEKIIDRAITSLRANGVEINREQWIQDAEECDRAGSVATCQAVMRAVIGIGIEEED 538
Query: 500 KKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLR 559
+K TW+ D + C ++E ARAI++ A VF +KK++WL+AA EK++G RESL ALL+
Sbjct: 539 RKHTWMEDADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQ 598
Query: 560 KAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSEEI 605
+AV +CP+AEVLWLMGAK KWLAGDVPA R IL A+ A PNSEEI
Sbjct: 599 RAVAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEI 644
Score = 361 (132.1 bits), Expect = 1.8e-142, Sum P(2) = 1.8e-142
Identities = 81/209 (38%), Positives = 114/209 (54%)
Query: 6 SKGRLDFLNSKPPANYIAGAGRGASSFTTRSDIGRTRTA-PPSTIIGLPRPKPRXXXXXX 64
+K + FL P Y+ G GRGA+ FTTRSDIG R A P P P R
Sbjct: 2 NKKKKPFLGMPAPLGYVPGLGRGATGFTTRSDIGPARDANDPVDDRHAP-PGKRTVGDQM 60
Query: 65 XXXXXXXXXYQQ----NFDHFEGNDAGLFVNLEYDDEDKEADAVWESIDKLMDSRRKSRR 120
+ N+D F G LF + Y+ +D+EADA++ ++DK MD RRK RR
Sbjct: 61 KKNQAADDDDEDLNDTNYDEFNGYAGSLFSSGPYEKDDEEADAIYAALDKRMDERRKERR 120
Query: 121 EARLEEEIKNYRYKNPTIREEFADLKGKLSTVKAKEWERIPEIGDY-SRRNKRKRFDSFV 179
E R +EEI+ YR + P I+++F+DLK KL+ V +EW IPE+GD ++R + R++
Sbjct: 121 EQREKEEIEKYRMERPKIQQQFSDLKRKLAEVTEEEWLSIPEVGDARNKRQRNPRYEKLT 180
Query: 180 PVPDSLLQKARQEQQHVIALDPSSRAAGG 208
PVPDS K Q ++ ++DP GG
Sbjct: 181 PVPDSFFAKHLQTGENHTSVDPRQTQFGG 209
Score = 135 (52.6 bits), Expect = 1.4e-39, Sum P(2) = 1.4e-39
Identities = 55/227 (24%), Positives = 95/227 (41%)
Query: 355 LRMALDEIPDSVRLW----KALVEISSEEEARILLHRAVECCPLDVELWLALVRLET--- 407
L+ A+ P + LW K+ AR +L A + P E+WLA V+LE+
Sbjct: 597 LQRAVAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESEND 656
Query: 408 -YGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRD 465
Y AR +L KAR P R +++ + KLE N + E +R + +
Sbjct: 657 EYERARRLLAKARSSAPTAR-VFMKSVKLEWVQDNIRAAQDLCEEALRHYEDFPKL---- 711
Query: 466 TWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFS 525
WM + ++ ++ + ++ ++ +EE K G + ARAI
Sbjct: 712 -WMMKGQIEEQKEMMEKAREAYNQGLK-KCPHSTPLWLLLSRLEE--KIGQLTRARAILE 767
Query: 526 PACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLW 572
+ +WL++ +LE G + L+ KA+ CP + +LW
Sbjct: 768 KSRLKNPKNPGLWLESVRLEYRAGLKNIANTLMAKALQECPNSGILW 814
Score = 135 (52.6 bits), Expect = 1.4e-39, Sum P(2) = 1.4e-39
Identities = 63/256 (24%), Positives = 101/256 (39%)
Query: 358 ALDEIPDSVRLW--KALVEIS--SEEEARILLHRAVECCPLDVELWLALVRLETYG---- 409
AL P +W A E + + E LL RAV CP LWL + +
Sbjct: 566 ALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSKWLAGDVP 625
Query: 410 VARSVLNKARKKLPKERAIWIAAAKLEANGNTSMVGKIIERGIRAL-QGEEVVIDRDTWM 468
ARS+L A + P IW+AA KLE+ + ER R L + +M
Sbjct: 626 AARSILALAFQANPNSEEIWLAAVKLESENDE------YERARRLLAKARSSAPTARVFM 679
Query: 469 KEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWV--ADVEECKKRGSIETARAIFSP 526
K ++ ++ + + ED + W+ +EE K+ +E AR ++
Sbjct: 680 KSVKLEWVQDNIRAAQDLCEEALR---HYEDFPKLWMMKGQIEEQKEM--MEKAREAYNQ 734
Query: 527 ACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVP 586
+WL ++LE+ G A+L K+ P+ LWL + ++ AG
Sbjct: 735 GLKKCPHSTPLWLLLSRLEEKIGQLTRARAILEKSRLKNPKNPGLWLESVRLEYRAGLKN 794
Query: 587 ATRDILQEAYAAIPNS 602
++ +A PNS
Sbjct: 795 IANTLMAKALQECPNS 810
Score = 104 (41.7 bits), Expect = 2.6e-36, Sum P(2) = 2.6e-36
Identities = 58/247 (23%), Positives = 104/247 (42%)
Query: 241 LTVFDPSGYLTRMNDLKITTNSELRDILKARKIVRAVTKNSPKKPLGWIQXXXXXXXXXX 300
L VF PS + N R+ L+A + RAV + PK + W+
Sbjct: 567 LQVF-PSKKSVWLRAAYFEKNHGTRESLEAL-LQRAVA-HCPKAEVLWLMGAKSKWLAGD 623
Query: 301 XXXXXKLITKGCNMCPKNEDVWLEACRL-ARPDE---AKSVVAKGVRQIPKSANKIRALR 356
++ P +E++WL A +L + DE A+ ++AK P + +++++
Sbjct: 624 VPAARSILALAFQANPNSEEIWLAAVKLESENDEYERARRLLAKARSSAPTARVFMKSVK 683
Query: 357 MALDEIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALVRLETYGV----AR 412
L+ + D++R + L E EA L H E P +LW+ ++E AR
Sbjct: 684 --LEWVQDNIRAAQDLCE-----EA--LRH--YEDFP---KLWMMKGQIEEQKEMMEKAR 729
Query: 413 SVLNKARKKLPKERAIWIAAAKLEAN-GNTSMVGKIIERGIRALQGEEVVIDRDTWMKEA 471
N+ KK P +W+ ++LE G + I+E+ L+ + + W++
Sbjct: 730 EAYNQGLKKCPHSTPLWLLLSRLEEKIGQLTRARAILEKS--RLKNPK---NPGLWLESV 784
Query: 472 EVADRAG 478
+ RAG
Sbjct: 785 RLEYRAG 791
Score = 88 (36.0 bits), Expect = 1.2e-34, Sum P(2) = 1.2e-34
Identities = 42/160 (26%), Positives = 70/160 (43%)
Query: 263 ELRDIL-KARKIVRAVTKNSPKK-PLGWIQXXXXXXXXXXXXXXXKLITKGCNMCPKNED 320
E ++++ KAR+ K P PL W+ ++ K PKN
Sbjct: 720 EQKEMMEKAREAYNQGLKKCPHSTPL-WLLLSRLEEKIGQLTRARAILEKSRLKNPKNPG 778
Query: 321 VWLEACRLARPDEAKSVVAKGVRQIPKSANKIRALRMALDEIPDSVRLWKALVEISSEEE 380
+WLE+ RL E ++ G++ I AN + A AL E P+S LW + + + +
Sbjct: 779 LWLESVRL----EYRA----GLKNI---ANTLMA--KALQECPNSGILWSEAIFLEARPQ 825
Query: 381 ARILLHRAVECCPLDVELWLALVRLETYGVARSVLNKARK 420
R A++ C D + LA+ +L + R + KAR+
Sbjct: 826 RRTKSVDALKKCEHDPHVLLAVAKL--FWSQRKI-TKARE 862
Score = 81 (33.6 bits), Expect = 6.7e-34, Sum P(2) = 6.7e-34
Identities = 43/192 (22%), Positives = 74/192 (38%)
Query: 263 ELRDILKARKIVRAVTKNSPKKPLGWIQXXXXXXXXXXXXXXXKLITKGCNMCPKNEDVW 322
++ + +AR I+ +PK P W++ L+ K CP + +W
Sbjct: 755 KIGQLTRARAILEKSRLKNPKNPGLWLESVRLEYRAGLKNIANTLMAKALQECPNSGILW 814
Query: 323 LEACRL-ARPDEAKSVVAKGVRQIPKSANKIRALRMALDEIPDSVRLWKALVEISSEEEA 381
EA L ARP K V + K + L +A+ ++ W +I+ +A
Sbjct: 815 SEAIFLEARPQRR----TKSVDALKKCEHDPHVL-LAVAKL-----FWSQR-KIT---KA 860
Query: 382 RILLHRAVECCPLDV-ELWLALVRLETYGVARSVLNKARKKL----PKERAIWIAAAKLE 436
R HR V+ D+ + W + E + RK+ P+ +W A +K
Sbjct: 861 REWFHRTVKI-DSDLGDAWAFFYKFELQHGTEEQQEEVRKRCESAEPRHGELWCAVSKDI 919
Query: 437 ANGNTSMVGKII 448
AN +G I+
Sbjct: 920 ANWQKK-IGDIL 930
>UNIPROTKB|F1N9U0 [details] [associations]
symbol:PRPF6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005682 "U5 snRNP"
evidence=IEA] [GO:0006403 "RNA localization" evidence=IEA]
[GO:0043021 "ribonucleoprotein complex binding" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0046540 "U4/U6 x U5
tri-snRNP complex" evidence=IEA] [GO:0050681 "androgen receptor
binding" evidence=IEA] [GO:0071001 "U4/U6 snRNP" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
InterPro:IPR003107 InterPro:IPR010491 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF06424 PROSITE:PS50293 SMART:SM00386
GO:GO:0045944 GO:GO:0005682 GO:GO:0003723 GO:GO:0003713
Gene3D:1.25.40.10 GO:GO:0043021 GO:GO:0000398 GO:GO:0071013
GO:GO:0046540 GO:GO:0006403 GO:GO:0071001 OMA:IWLRAAY
InterPro:IPR027108 PANTHER:PTHR11246:SF1
GeneTree:ENSGT00550000075016 EMBL:AADN02019178 EMBL:AADN02019179
EMBL:AADN02019180 IPI:IPI00589966 Ensembl:ENSGALT00000009656
Uniprot:F1N9U0
Length = 945
Score = 1051 (375.0 bits), Expect = 2.4e-142, Sum P(2) = 2.4e-142
Identities = 211/406 (51%), Positives = 274/406 (67%)
Query: 215 DLTAVGEGRGKILTLKLDGISDSVTGLTVFDPSGYLTRMNDLKITTNSELRDILKARKIV 274
D+ +G+ R ++ ++L +SDSV+G TV DP GYLT +N + T ++ DI KAR ++
Sbjct: 243 DMRKIGQARNTLMDMRLSQVSDSVSGQTVVDPKGYLTDLNSMIPTHGGDINDIKKARLLL 302
Query: 275 RAVTKNSPKKPLGWIQXXXXXXXXXXXXXXXKLITKGCNMCPKNEDVWLEACRLARPDEA 334
++V + +P P WI LI KG MCPK+EDVWLEA RL D A
Sbjct: 303 KSVRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWLEAARLQPGDTA 362
Query: 335 KSVVAKGVRQIPKSAN--------------KIRALRMALDEIPDSVRLWKALVEISSEEE 380
K+VVA+ VR +P+S K R LR AL+ +P+SVRLWKA VE+ E+
Sbjct: 363 KAVVAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELEEPED 422
Query: 381 ARILLHRAVECCPLDVELWLALVRLETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANG 439
ARI+L RAVECCP VELWLAL RLETY AR VLNKAR+ +P +R IWI AAKLE ANG
Sbjct: 423 ARIMLSRAVECCPTSVELWLALARLETYENARKVLNKARENIPTDRHIWITAAKLEEANG 482
Query: 440 NTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEED 499
NT MV KII+R I +L+ V I+R+ W+++AE D+AGSV TC AI+ I IG++EED
Sbjct: 483 NTQMVEKIIDRAITSLRANGVEINREQWIQDAEECDKAGSVATCQAIMRAVIGIGIEEED 542
Query: 500 KKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLR 559
+K TW+ D + C ++E ARAI++ A VF +KK++WL+AA EK++G RESL ALL+
Sbjct: 543 RKHTWMEDADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQ 602
Query: 560 KAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSEEI 605
+AV +CP+AEVLWLMGAK KWLAGDVPA R IL A+ A PNSEEI
Sbjct: 603 RAVAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEI 648
Score = 362 (132.5 bits), Expect = 2.4e-142, Sum P(2) = 2.4e-142
Identities = 81/209 (38%), Positives = 114/209 (54%)
Query: 6 SKGRLDFLNSKPPANYIAGAGRGASSFTTRSDIGRTRTA-PPSTIIGLPRPKPRXXXXXX 64
+K + FL P Y+ G GRGA+ FTTRSDIG R A P P P R
Sbjct: 6 NKKKKPFLGMPAPLGYVPGLGRGATGFTTRSDIGPARDANDPVDDRHAP-PGKRTVGDQM 64
Query: 65 XXXXXXXXXYQQ----NFDHFEGNDAGLFVNLEYDDEDKEADAVWESIDKLMDSRRKSRR 120
+ N+D F G LF + Y+ +D+EADA++ ++DK MD RRK RR
Sbjct: 65 KKNQTADDDDEDLNDTNYDEFNGYAGSLFSSGPYEKDDEEADAIYAALDKRMDERRKERR 124
Query: 121 EARLEEEIKNYRYKNPTIREEFADLKGKLSTVKAKEWERIPEIGDY-SRRNKRKRFDSFV 179
E R +EEI+ YR + P I+++F+DLK KL+ V +EW IPE+GD ++R + R++
Sbjct: 125 EQREKEEIEKYRMERPKIQQQFSDLKRKLAEVTEEEWLSIPEVGDARNKRQRNPRYEKLT 184
Query: 180 PVPDSLLQKARQEQQHVIALDPSSRAAGG 208
PVPDS K Q ++ ++DP GG
Sbjct: 185 PVPDSFFAKHLQSGENHTSVDPRQTQFGG 213
Score = 150 (57.9 bits), Expect = 3.0e-41, Sum P(2) = 3.0e-41
Identities = 65/256 (25%), Positives = 102/256 (39%)
Query: 358 ALDEIPDSVRLW--KALVEIS--SEEEARILLHRAVECCPLDVELWLALVRLETYG---- 409
AL P +W A E + + E LL RAV CP LWL + +
Sbjct: 570 ALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSKWLAGDVP 629
Query: 410 VARSVLNKARKKLPKERAIWIAAAKLEANGNTSMVGKIIERGIRAL-QGEEVVIDRDTWM 468
ARS+L A + P IW+AA KLE+ N ER R L + +M
Sbjct: 630 AARSILALAFQANPNSEEIWLAAVKLESENNE------YERARRLLAKARSSAPTARVFM 683
Query: 469 KEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWV--ADVEECKKRGSIETARAIFSP 526
K ++ G++ + + ED + W+ +EE K+ +E AR ++
Sbjct: 684 KSVKLEWVLGNIAAAQELCEEALR---HYEDFPKLWMMKGQIEEQKEL--VERAREAYNQ 738
Query: 527 ACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVP 586
+WL ++LE+ G A+L K+ P+ LWL + ++ AG
Sbjct: 739 GLKKCPHSIPLWLLLSRLEEKVGQLTRARAILEKSRLKNPKNADLWLESVRLEYRAGLKN 798
Query: 587 ATRDILQEAYAAIPNS 602
++ +A PNS
Sbjct: 799 IANTLMAKALQECPNS 814
Score = 144 (55.7 bits), Expect = 1.3e-40, Sum P(2) = 1.3e-40
Identities = 57/227 (25%), Positives = 99/227 (43%)
Query: 355 LRMALDEIPDSVRLW----KALVEISSEEEARILLHRAVECCPLDVELWLALVRLET--- 407
L+ A+ P + LW K+ AR +L A + P E+WLA V+LE+
Sbjct: 601 LQRAVAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENN 660
Query: 408 -YGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRD 465
Y AR +L KAR P R +++ + KLE GN + ++ E +R + +
Sbjct: 661 EYERARRLLAKARSSAPTAR-VFMKSVKLEWVLGNIAAAQELCEEALRHYEDFPKL---- 715
Query: 466 TWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFS 525
WM + ++ ++ V ++ ++ +EE K G + ARAI
Sbjct: 716 -WMMKGQIEEQKELVERAREAYNQGLK-KCPHSIPLWLLLSRLEE--KVGQLTRARAILE 771
Query: 526 PACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLW 572
+ ++WL++ +LE G + L+ KA+ CP + +LW
Sbjct: 772 KSRLKNPKNADLWLESVRLEYRAGLKNIANTLMAKALQECPNSGILW 818
Score = 106 (42.4 bits), Expect = 1.2e-36, Sum P(2) = 1.2e-36
Identities = 68/351 (19%), Positives = 130/351 (37%)
Query: 270 ARKIVRAVTKNSPKKPLGWIQXXXXXXXXXXXXXXXKLITKG-----CNMCPKNEDVWLE 324
ARK++ +N P WI K+I + N N + W++
Sbjct: 453 ARKVLNKARENIPTDRHIWITAAKLEEANGNTQMVEKIIDRAITSLRANGVEINREQWIQ 512
Query: 325 ACRLARPDEAKSVVAKGVRQIPKSANKIRALRMALDEIPDSVRLWK----ALVEISSEEE 380
D+A SV + I ++ + + ++E D W + V ++ E
Sbjct: 513 DAEEC--DKAGSVAT--CQAIMRAV-----IGIGIEE-EDRKHTWMEDADSCVAHNALEC 562
Query: 381 ARILLHRAVECCPLDVELWLALVRLE-TYGVARSV---LNKARKKLPKERAIWIAAAKLE 436
AR + A++ P +WL E +G S+ L +A PK +W+ AK +
Sbjct: 563 ARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSK 622
Query: 437 -ANGNTSMVGKIIERGIRAL-QGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIG 494
G+ I+ +A EE+ + E +RA ++ T +
Sbjct: 623 WLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARSSAPTARVF 682
Query: 495 VDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESL 554
+ + K WV G+I A+ + A + +W+ Q+E+ E
Sbjct: 683 M--KSVKLEWVL--------GNIAAAQELCEEALRHYEDFPKLWMMKGQIEEQKELVERA 732
Query: 555 IALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSEEI 605
+ + CP + LWL+ ++ + G + R IL+++ P + ++
Sbjct: 733 REAYNQGLKKCPHSIPLWLLLSRLEEKVGQLTRARAILEKSRLKNPKNADL 783
Score = 92 (37.4 bits), Expect = 3.7e-35, Sum P(2) = 3.7e-35
Identities = 32/116 (27%), Positives = 53/116 (45%)
Query: 332 DEAKSVVAKG-VRQIPKSANKIR-ALRMALDEIPDSVRLWKALVEISSE----EEARILL 385
D K + KG + + + + R A L + P S+ LW L + + AR +L
Sbjct: 711 DFPKLWMMKGQIEEQKELVERAREAYNQGLKKCPHSIPLWLLLSRLEEKVGQLTRARAIL 770
Query: 386 HRAVECCPLDVELWLALVRLE----TYGVARSVLNKARKKLPKERAIWIAAAKLEA 437
++ P + +LWL VRLE +A +++ KA ++ P +W A LEA
Sbjct: 771 EKSRLKNPKNADLWLESVRLEYRAGLKNIANTLMAKALQECPNSGILWSEAIFLEA 826
Score = 72 (30.4 bits), Expect = 4.6e-33, Sum P(2) = 4.6e-33
Identities = 38/173 (21%), Positives = 72/173 (41%)
Query: 264 LRDILKARKIVRAVTKNSPKKPLGWIQXXXXXXXXXXXXXXXKLITKGCNMCPKNEDVWL 323
L +I A+++ ++ P W+ + +G CP + +WL
Sbjct: 692 LGNIAAAQELCEEALRHYEDFPKLWMMKGQIEEQKELVERAREAYNQGLKKCPHSIPLWL 751
Query: 324 EACRLARPDEAKSVVAKGVRQIPKSANKIRALRMALDEIPDSVRL-WKALVEISSEEEAR 382
L+R +E + + + KS +++ + A D +SVRL ++A + A
Sbjct: 752 ---LLSRLEEKVGQLTRARAILEKS--RLKNPKNA-DLWLESVRLEYRA----GLKNIAN 801
Query: 383 ILLHRAVECCPLDVELWLALVRLETYGVARSVLNKARKKLPKERAIWIAAAKL 435
L+ +A++ CP LW + LE ++ A KK + + +A AKL
Sbjct: 802 TLMAKALQECPNSGILWSEAIFLEARPQRKTKSVDALKKCEHDPHVLLAVAKL 854
>UNIPROTKB|E2RPW8 [details] [associations]
symbol:PRPF6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IEA] InterPro:IPR003107
InterPro:IPR010491 InterPro:IPR011990 InterPro:IPR013026
InterPro:IPR019734 Pfam:PF06424 Pfam:PF13181 PROSITE:PS50293
SMART:SM00386 GO:GO:0005634 Gene3D:1.25.40.10 GO:GO:0000398
KO:K12855 OMA:IWLRAAY InterPro:IPR027108 PANTHER:PTHR11246:SF1
CTD:24148 GeneTree:ENSGT00550000075016 EMBL:AAEX03014173
EMBL:AAEX03014174 RefSeq:XP_534481.3 Ensembl:ENSCAFT00000020914
GeneID:477289 KEGG:cfa:477289 Uniprot:E2RPW8
Length = 941
Score = 1050 (374.7 bits), Expect = 3.0e-142, Sum P(2) = 3.0e-142
Identities = 210/406 (51%), Positives = 274/406 (67%)
Query: 215 DLTAVGEGRGKILTLKLDGISDSVTGLTVFDPSGYLTRMNDLKITTNSELRDILKARKIV 274
D+ +G+ R ++ ++L +SDSV+G TV DP GYLT +N + T ++ DI KAR ++
Sbjct: 239 DMRKIGQARNTLMDMRLSQVSDSVSGQTVVDPKGYLTDLNSMIPTHGGDINDIKKARLLL 298
Query: 275 RAVTKNSPKKPLGWIQXXXXXXXXXXXXXXXKLITKGCNMCPKNEDVWLEACRLARPDEA 334
++V + +P P WI LI KG MCPK+EDVWLEA RL D A
Sbjct: 299 KSVRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWLEAARLQPGDTA 358
Query: 335 KSVVAKGVRQIPKSAN--------------KIRALRMALDEIPDSVRLWKALVEISSEEE 380
K+VVA+ VR +P+S K R LR AL+ +P+SVRLWKA VE+ E+
Sbjct: 359 KAVVAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELEEPED 418
Query: 381 ARILLHRAVECCPLDVELWLALVRLETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANG 439
ARI+L RAVECCP VELWLAL RLETY AR VLNKAR+ +P +R IWI AAKLE ANG
Sbjct: 419 ARIMLSRAVECCPTSVELWLALARLETYENARKVLNKARENIPTDRHIWITAAKLEEANG 478
Query: 440 NTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEED 499
NT MV KII+R I +L+ V I+R+ W+++AE D+AGSV TC A++ I IG++EED
Sbjct: 479 NTQMVEKIIDRAITSLRANGVEINREQWIQDAEECDKAGSVATCQAVMRAVIGIGIEEED 538
Query: 500 KKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLR 559
+K TW+ D + C ++E ARAI++ A VF +KK++WL+AA EK++G RESL ALL+
Sbjct: 539 RKHTWMEDADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQ 598
Query: 560 KAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSEEI 605
+AV +CP+AEVLWLMGAK KWLAGDVPA R IL A+ A PNSEEI
Sbjct: 599 RAVAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEI 644
Score = 362 (132.5 bits), Expect = 3.0e-142, Sum P(2) = 3.0e-142
Identities = 81/209 (38%), Positives = 114/209 (54%)
Query: 6 SKGRLDFLNSKPPANYIAGAGRGASSFTTRSDIGRTRTA-PPSTIIGLPRPKPRXXXXXX 64
+K + FL P Y+ G GRGA+ FTTRSDIG R A P P P R
Sbjct: 2 NKKKKPFLGMPAPLGYVPGLGRGATGFTTRSDIGPARDANDPVDDRHAP-PGKRTVGDQM 60
Query: 65 XXXXXXXXXYQQ----NFDHFEGNDAGLFVNLEYDDEDKEADAVWESIDKLMDSRRKSRR 120
+ N+D F G LF + Y+ +D+EADA++ ++DK MD RRK RR
Sbjct: 61 KKSQAADDDDEDLNDTNYDEFNGYAGSLFSSGPYEKDDEEADAIYAALDKRMDERRKERR 120
Query: 121 EARLEEEIKNYRYKNPTIREEFADLKGKLSTVKAKEWERIPEIGDY-SRRNKRKRFDSFV 179
E R +EEI+ YR + P I+++F+DLK KL+ V +EW IPE+GD ++R + R++
Sbjct: 121 EQREKEEIEKYRMERPKIQQQFSDLKRKLAEVTEEEWLSIPEVGDARNKRQRNPRYEKLT 180
Query: 180 PVPDSLLQKARQEQQHVIALDPSSRAAGG 208
PVPDS K Q ++ ++DP GG
Sbjct: 181 PVPDSFFAKHLQTGENHTSVDPRQTQFGG 209
Score = 146 (56.5 bits), Expect = 7.7e-41, Sum P(2) = 7.7e-41
Identities = 62/254 (24%), Positives = 100/254 (39%)
Query: 358 ALDEIPDSVRLW--KALVEIS--SEEEARILLHRAVECCPLDVELWLALVRLETYG---- 409
AL P +W A E + + E LL RAV CP LWL + +
Sbjct: 566 ALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSKWLAGDVP 625
Query: 410 VARSVLNKARKKLPKERAIWIAAAKLEANGNTSMVGKIIERGIRAL-QGEEVVIDRDTWM 468
ARS+L A + P IW+AA KLE+ N ER R L + +M
Sbjct: 626 AARSILALAFQANPNSEEIWLAAVKLESENNE------YERARRLLAKARSSAPTARVFM 679
Query: 469 KEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPAC 528
K ++ G++ + + ED + W+ + ++ +E AR ++
Sbjct: 680 KSVKLEWVLGNIAAAQELCEEALR---HYEDFPKLWMMKGQIEEQEELMERAREAYNQGL 736
Query: 529 TVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPAT 588
+WL ++LE+ G A+L K+ P+ LWL + ++ AG
Sbjct: 737 KKCPHSTPLWLLLSRLEEKVGQLTRARAILEKSRLKNPKNPGLWLESVRLEYRAGLKNIA 796
Query: 589 RDILQEAYAAIPNS 602
++ +A PNS
Sbjct: 797 NTLMAKALQECPNS 810
Score = 143 (55.4 bits), Expect = 1.6e-40, Sum P(2) = 1.6e-40
Identities = 57/227 (25%), Positives = 98/227 (43%)
Query: 355 LRMALDEIPDSVRLW----KALVEISSEEEARILLHRAVECCPLDVELWLALVRLET--- 407
L+ A+ P + LW K+ AR +L A + P E+WLA V+LE+
Sbjct: 597 LQRAVAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENN 656
Query: 408 -YGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRD 465
Y AR +L KAR P R +++ + KLE GN + ++ E +R + +
Sbjct: 657 EYERARRLLAKARSSAPTAR-VFMKSVKLEWVLGNIAAAQELCEEALRHYEDFPKL---- 711
Query: 466 TWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFS 525
WM + ++ ++ + ++ ++ +EE K G + ARAI
Sbjct: 712 -WMMKGQIEEQEELMERAREAYNQGLK-KCPHSTPLWLLLSRLEE--KVGQLTRARAILE 767
Query: 526 PACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLW 572
+ +WL++ +LE G + L+ KA+ CP + VLW
Sbjct: 768 KSRLKNPKNPGLWLESVRLEYRAGLKNIANTLMAKALQECPNSGVLW 814
Score = 96 (38.9 bits), Expect = 1.4e-35, Sum P(2) = 1.4e-35
Identities = 53/243 (21%), Positives = 96/243 (39%)
Query: 241 LTVFDPSGYLTRMNDLKITTNSELRDILKARKIVRAVTKNSPKKPLGWIQXXXXXXXXXX 300
L VF PS + N R+ L+A + RAV + PK + W+
Sbjct: 567 LQVF-PSKKSVWLRAAYFEKNHGTRESLEAL-LQRAVA-HCPKAEVLWLMGAKSKWLAGD 623
Query: 301 XXXXXKLITKGCNMCPKNEDVWLEACRLARPDEAKSVVAKGVRQIPKSANKIRALRMALD 360
++ P +E++WL A +L + + + R + K+ + R+ +
Sbjct: 624 VPAARSILALAFQANPNSEEIWLAAVKL---ESENNEYERARRLLAKARSSAPTARVFMK 680
Query: 361 EIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALVRLETYGV----ARSVLN 416
SV+L L I++ +E R E P +LW+ ++E AR N
Sbjct: 681 ----SVKLEWVLGNIAAAQELCEEALRHYEDFP---KLWMMKGQIEEQEELMERAREAYN 733
Query: 417 KARKKLPKERAIWIAAAKLEAN-GNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVAD 475
+ KK P +W+ ++LE G + I+E+ L+ + + W++ +
Sbjct: 734 QGLKKCPHSTPLWLLLSRLEEKVGQLTRARAILEKS--RLKNPK---NPGLWLESVRLEY 788
Query: 476 RAG 478
RAG
Sbjct: 789 RAG 791
Score = 83 (34.3 bits), Expect = 3.2e-34, Sum P(2) = 3.2e-34
Identities = 42/165 (25%), Positives = 70/165 (42%)
Query: 257 KITTNSELRDILKARKIVRAVTKNSPKK-PLGWIQXXXXXXXXXXXXXXXKLITKGCNMC 315
+I EL + +AR+ K P PL W+ ++ K
Sbjct: 717 QIEEQEELME--RAREAYNQGLKKCPHSTPL-WLLLSRLEEKVGQLTRARAILEKSRLKN 773
Query: 316 PKNEDVWLEACRLARPDEAKSVVAKGVRQIPKSANKIRALRMALDEIPDSVRLWKALVEI 375
PKN +WLE+ RL E ++ G++ I AN + A AL E P+S LW + +
Sbjct: 774 PKNPGLWLESVRL----EYRA----GLKNI---ANTLMA--KALQECPNSGVLWSEAIFL 820
Query: 376 SSEEEARILLHRAVECCPLDVELWLALVRLETYGVARSVLNKARK 420
+ + + A++ C D + LA+ +L + R + KAR+
Sbjct: 821 EARPQRKTKSVDALKKCEHDPHVLLAVAKL--FWSERKI-TKARE 862
Score = 81 (33.6 bits), Expect = 5.1e-34, Sum P(2) = 5.1e-34
Identities = 44/188 (23%), Positives = 76/188 (40%)
Query: 267 ILKARKIVRAVTKNSPKKPLGWIQXXXXXXXXXXXXXXXKLITKGCNMCPKNEDVWLEAC 326
+ +AR I+ +PK P W++ L+ K CP + +W EA
Sbjct: 759 LTRARAILEKSRLKNPKNPGLWLESVRLEYRAGLKNIANTLMAKALQECPNSGVLWSEAI 818
Query: 327 RL-ARPDEAKSVVAKGVRQIPKSANKIRALRMALDEIPDSVRLWKALVEISSEEEARILL 385
L ARP + K+ K V + K + L +A+ ++ W +I+ +AR
Sbjct: 819 FLEARP-QRKT---KSVDALKKCEHDPHVL-LAVAKL-----FWSER-KIT---KAREWF 864
Query: 386 HRAVECCPLDV-ELWLALVRLET-YGVARS---VLNKARKKLPKERAIWIAAAKLEANGN 440
HR V+ D+ + W + E +G V + P+ +W A +K AN
Sbjct: 865 HRTVKI-DSDLGDAWAFFYKFELQHGTEEQREEVRRRCENAEPRHGELWCAVSKDIANWQ 923
Query: 441 TSMVGKII 448
+G+I+
Sbjct: 924 RK-IGEIL 930
>UNIPROTKB|Q2KJJ0 [details] [associations]
symbol:PRPF6 "Pre-mRNA-processing factor 6" species:9913
"Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0071001 "U4/U6
snRNP" evidence=IEA] [GO:0050681 "androgen receptor binding"
evidence=IEA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0043021
"ribonucleoprotein complex binding" evidence=IEA] [GO:0006403 "RNA
localization" evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003713 "transcription
coactivator activity" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR003107 InterPro:IPR010491
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF06424 PROSITE:PS50293
SMART:SM00386 GO:GO:0016607 GO:GO:0045944 GO:GO:0005682
GO:GO:0003723 GO:GO:0003713 eggNOG:COG0457 Gene3D:1.25.40.10
GO:GO:0043021 GO:GO:0000398 GO:GO:0071013 GO:GO:0046540
GO:GO:0006403 GO:GO:0071001 HOGENOM:HOG000116247 KO:K12855
OMA:IWLRAAY InterPro:IPR027108 PANTHER:PTHR11246:SF1
EMBL:AAFC03042419 EMBL:BC105318 IPI:IPI00702400
RefSeq:NP_001039840.1 UniGene:Bt.40556 ProteinModelPortal:Q2KJJ0
STRING:Q2KJJ0 Ensembl:ENSBTAT00000015480 GeneID:534228
KEGG:bta:534228 CTD:24148 GeneTree:ENSGT00550000075016
HOVERGEN:HBG023330 InParanoid:Q2KJJ0 OrthoDB:EOG4FTVZW
NextBio:20876316 ArrayExpress:Q2KJJ0 Uniprot:Q2KJJ0
Length = 941
Score = 1050 (374.7 bits), Expect = 3.0e-142, Sum P(2) = 3.0e-142
Identities = 210/406 (51%), Positives = 274/406 (67%)
Query: 215 DLTAVGEGRGKILTLKLDGISDSVTGLTVFDPSGYLTRMNDLKITTNSELRDILKARKIV 274
D+ +G+ R ++ ++L +SDSV+G TV DP GYLT +N + T ++ DI KAR ++
Sbjct: 239 DMRKIGQARNTLMDMRLSQVSDSVSGQTVVDPKGYLTDLNSMIPTHGGDINDIKKARLLL 298
Query: 275 RAVTKNSPKKPLGWIQXXXXXXXXXXXXXXXKLITKGCNMCPKNEDVWLEACRLARPDEA 334
++V + +P P WI LI KG MCPK+EDVWLEA RL D A
Sbjct: 299 KSVRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWLEAARLQPGDTA 358
Query: 335 KSVVAKGVRQIPKSAN--------------KIRALRMALDEIPDSVRLWKALVEISSEEE 380
K+VVA+ VR +P+S K R LR AL+ +P+SVRLWKA VE+ E+
Sbjct: 359 KAVVAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELEEPED 418
Query: 381 ARILLHRAVECCPLDVELWLALVRLETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANG 439
ARI+L RAVECCP VELWLAL RLETY AR VLNKAR+ +P +R IWI AAKLE ANG
Sbjct: 419 ARIMLSRAVECCPTSVELWLALARLETYENARKVLNKARENIPTDRHIWITAAKLEEANG 478
Query: 440 NTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEED 499
NT MV KII+R I +L+ V I+R+ W+++AE D+AGSV TC A++ I IG++EED
Sbjct: 479 NTQMVEKIIDRAITSLRANGVEINREQWIQDAEECDKAGSVATCQAVMRAVIGIGIEEED 538
Query: 500 KKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLR 559
+K TW+ D + C ++E ARAI++ A VF +KK++WL+AA EK++G RESL ALL+
Sbjct: 539 RKHTWMEDADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQ 598
Query: 560 KAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSEEI 605
+AV +CP+AEVLWLMGAK KWLAGDVPA R IL A+ A PNSEEI
Sbjct: 599 RAVAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEI 644
Score = 362 (132.5 bits), Expect = 3.0e-142, Sum P(2) = 3.0e-142
Identities = 81/209 (38%), Positives = 114/209 (54%)
Query: 6 SKGRLDFLNSKPPANYIAGAGRGASSFTTRSDIGRTRTA-PPSTIIGLPRPKPRXXXXXX 64
+K + FL P Y+ G GRGA+ FTTRSDIG R A P P P R
Sbjct: 2 NKKKKPFLGMPAPLGYVPGLGRGATGFTTRSDIGPARDANDPVDDRHAP-PGKRTVGDQM 60
Query: 65 XXXXXXXXXYQQ----NFDHFEGNDAGLFVNLEYDDEDKEADAVWESIDKLMDSRRKSRR 120
+ N+D F G LF + Y+ +D+EADA++ ++DK MD RRK RR
Sbjct: 61 KKSQAADDDDEDLNDTNYDEFNGYAGSLFSSGPYEKDDEEADAIYAALDKRMDERRKERR 120
Query: 121 EARLEEEIKNYRYKNPTIREEFADLKGKLSTVKAKEWERIPEIGDY-SRRNKRKRFDSFV 179
E R +EEI+ YR + P I+++F+DLK KL+ V +EW IPE+GD ++R + R++
Sbjct: 121 EQREKEEIEKYRMERPKIQQQFSDLKRKLAEVTEEEWLSIPEVGDARNKRQRNPRYEKLT 180
Query: 180 PVPDSLLQKARQEQQHVIALDPSSRAAGG 208
PVPDS K Q ++ ++DP GG
Sbjct: 181 PVPDSFFAKHLQTGENHTSVDPRQTQFGG 209
Score = 150 (57.9 bits), Expect = 2.9e-41, Sum P(2) = 2.9e-41
Identities = 63/254 (24%), Positives = 102/254 (40%)
Query: 358 ALDEIPDSVRLW--KALVEIS--SEEEARILLHRAVECCPLDVELWLALVRLETYG---- 409
AL P +W A E + + E LL RAV CP LWL + +
Sbjct: 566 ALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSKWLAGDVP 625
Query: 410 VARSVLNKARKKLPKERAIWIAAAKLEANGNTSMVGKIIERGIRAL-QGEEVVIDRDTWM 468
ARS+L A + P IW+AA KLE+ N ER R L + +M
Sbjct: 626 AARSILALAFQANPNSEEIWLAAVKLESENNE------YERARRLLAKARSSAPTARVFM 679
Query: 469 KEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPAC 528
K ++ G++V + ++ ED + W+ + ++ +E AR ++
Sbjct: 680 KSVKLEWVLGNLVAAQELCEEALK---HYEDFPKLWMMKGQIEEQEELVEKAREAYNQGL 736
Query: 529 TVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPAT 588
+WL ++LE+ G A+L K+ P+ LWL + ++ AG
Sbjct: 737 KKCPHSTPLWLLLSRLEEKVGQLTRARAILEKSRLKNPKNPGLWLESVRLEYRAGLKNIA 796
Query: 589 RDILQEAYAAIPNS 602
++ +A PNS
Sbjct: 797 STLMAKALQECPNS 810
Score = 141 (54.7 bits), Expect = 2.6e-40, Sum P(2) = 2.6e-40
Identities = 57/227 (25%), Positives = 97/227 (42%)
Query: 355 LRMALDEIPDSVRLW----KALVEISSEEEARILLHRAVECCPLDVELWLALVRLET--- 407
L+ A+ P + LW K+ AR +L A + P E+WLA V+LE+
Sbjct: 597 LQRAVAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENN 656
Query: 408 -YGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRD 465
Y AR +L KAR P R +++ + KLE GN ++ E ++ + +
Sbjct: 657 EYERARRLLAKARSSAPTAR-VFMKSVKLEWVLGNLVAAQELCEEALKHYEDFPKL---- 711
Query: 466 TWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFS 525
WM + ++ ++ V ++ ++ +EE K G + ARAI
Sbjct: 712 -WMMKGQIEEQEELVEKAREAYNQGLK-KCPHSTPLWLLLSRLEE--KVGQLTRARAILE 767
Query: 526 PACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLW 572
+ +WL++ +LE G + L+ KA+ CP + VLW
Sbjct: 768 KSRLKNPKNPGLWLESVRLEYRAGLKNIASTLMAKALQECPNSGVLW 814
Score = 90 (36.7 bits), Expect = 5.8e-35, Sum P(2) = 5.8e-35
Identities = 51/243 (20%), Positives = 96/243 (39%)
Query: 241 LTVFDPSGYLTRMNDLKITTNSELRDILKARKIVRAVTKNSPKKPLGWIQXXXXXXXXXX 300
L VF PS + N R+ L+A + RAV + PK + W+
Sbjct: 567 LQVF-PSKKSVWLRAAYFEKNHGTRESLEAL-LQRAVA-HCPKAEVLWLMGAKSKWLAGD 623
Query: 301 XXXXXKLITKGCNMCPKNEDVWLEACRLARPDEAKSVVAKGVRQIPKSANKIRALRMALD 360
++ P +E++WL A +L + + + R + K+ + R+ +
Sbjct: 624 VPAARSILALAFQANPNSEEIWLAAVKL---ESENNEYERARRLLAKARSSAPTARVFMK 680
Query: 361 EIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALVRLETYGV----ARSVLN 416
SV+L L + + +E L A++ +LW+ ++E AR N
Sbjct: 681 ----SVKLEWVLGNLVAAQE---LCEEALKHYEDFPKLWMMKGQIEEQEELVEKAREAYN 733
Query: 417 KARKKLPKERAIWIAAAKLEAN-GNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVAD 475
+ KK P +W+ ++LE G + I+E+ L+ + + W++ +
Sbjct: 734 QGLKKCPHSTPLWLLLSRLEEKVGQLTRARAILEKS--RLKNPK---NPGLWLESVRLEY 788
Query: 476 RAG 478
RAG
Sbjct: 789 RAG 791
Score = 82 (33.9 bits), Expect = 4.0e-34, Sum P(2) = 4.0e-34
Identities = 44/188 (23%), Positives = 76/188 (40%)
Query: 267 ILKARKIVRAVTKNSPKKPLGWIQXXXXXXXXXXXXXXXKLITKGCNMCPKNEDVWLEAC 326
+ +AR I+ +PK P W++ L+ K CP + +W EA
Sbjct: 759 LTRARAILEKSRLKNPKNPGLWLESVRLEYRAGLKNIASTLMAKALQECPNSGVLWSEAI 818
Query: 327 RL-ARPDEAKSVVAKGVRQIPKSANKIRALRMALDEIPDSVRLWKALVEISSEEEARILL 385
L ARP + K+ K V + K + L +A+ ++ W +I+ +AR
Sbjct: 819 FLEARP-QRKT---KSVDALKKCEHDPHVL-LAVAKL-----FWSER-KIT---KAREWF 864
Query: 386 HRAVECCPLDV-ELWLALVRLET-YGVARS---VLNKARKKLPKERAIWIAAAKLEANGN 440
HR V+ D+ + W + E +G V + P+ +W A +K AN
Sbjct: 865 HRTVKI-DSDLGDAWAFFYKFELQHGTEEQREEVRRRCENAEPRHGELWCATSKDIANWQ 923
Query: 441 TSMVGKII 448
+G+I+
Sbjct: 924 RK-IGEIL 930
Score = 80 (33.2 bits), Expect = 6.5e-34, Sum P(2) = 6.5e-34
Identities = 42/165 (25%), Positives = 70/165 (42%)
Query: 257 KITTNSELRDILKARKIVRAVTKNSPKK-PLGWIQXXXXXXXXXXXXXXXKLITKGCNMC 315
+I EL + KAR+ K P PL W+ ++ K
Sbjct: 717 QIEEQEEL--VEKAREAYNQGLKKCPHSTPL-WLLLSRLEEKVGQLTRARAILEKSRLKN 773
Query: 316 PKNEDVWLEACRLARPDEAKSVVAKGVRQIPKSANKIRALRMALDEIPDSVRLWKALVEI 375
PKN +WLE+ RL E ++ G++ I A+ + A AL E P+S LW + +
Sbjct: 774 PKNPGLWLESVRL----EYRA----GLKNI---ASTLMA--KALQECPNSGVLWSEAIFL 820
Query: 376 SSEEEARILLHRAVECCPLDVELWLALVRLETYGVARSVLNKARK 420
+ + + A++ C D + LA+ +L + R + KAR+
Sbjct: 821 EARPQRKTKSVDALKKCEHDPHVLLAVAKL--FWSERKI-TKARE 862
>ZFIN|ZDB-GENE-030131-2575 [details] [associations]
symbol:prpf6 "PRP6 pre-mRNA processing factor 6
homolog (S. cerevisiae)" species:7955 "Danio rerio" [GO:0005634
"nucleus" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR003107 InterPro:IPR010491 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF06424 PROSITE:PS50293 SMART:SM00386
ZFIN:ZDB-GENE-030131-2575 GO:GO:0005634 Gene3D:1.25.40.10
GO:GO:0000398 KO:K12855 InterPro:IPR027108 PANTHER:PTHR11246:SF1
CTD:24148 HOVERGEN:HBG023330 EMBL:BC056710 IPI:IPI00484708
RefSeq:NP_997820.1 UniGene:Dr.150395 ProteinModelPortal:Q6PH55
STRING:Q6PH55 GeneID:323855 KEGG:dre:323855 InParanoid:Q6PH55
NextBio:20808461 ArrayExpress:Q6PH55 Bgee:Q6PH55 Uniprot:Q6PH55
Length = 944
Score = 1037 (370.1 bits), Expect = 3.4e-141, Sum P(2) = 3.4e-141
Identities = 210/406 (51%), Positives = 271/406 (66%)
Query: 215 DLTAVGEGRGKILTLKLDGISDSVTGLTVFDPSGYLTRMNDLKITTNSELRDILKARKIV 274
D+ +G+ R ++ ++L +SDSV+G TV DP GYLT +N + T ++ DI KAR ++
Sbjct: 242 DMRKIGQARNTLMDMRLSQVSDSVSGQTVVDPKGYLTDLNSMIPTYGGDISDIKKARLLL 301
Query: 275 RAVTKNSPKKPLGWIQXXXXXXXXXXXXXXXKLITKGCNMCPKNEDVWLEACRLARPDEA 334
++V + +P P WI LI KG MCPK+EDVWLEA RL D A
Sbjct: 302 KSVRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWLEAARLQPGDTA 361
Query: 335 KSVVAKGVRQIPKSAN--------------KIRALRMALDEIPDSVRLWKALVEISSEEE 380
K+VVA+ VR +P+S K R LR AL+ + SVRLWK VE+ E+
Sbjct: 362 KAVVAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALENVSKSVRLWKTAVELEEPED 421
Query: 381 ARILLHRAVECCPLDVELWLALVRLETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANG 439
ARI+L RAVECCP VELWLAL RLETY AR VLNKAR+ +P +R IWI AAKLE ANG
Sbjct: 422 ARIMLSRAVECCPTSVELWLALARLETYENARRVLNKARENIPTDRHIWITAAKLEEANG 481
Query: 440 NTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEED 499
NT MV KII+R I +L+ V I+R+ W+++AE D+AGSVVTC ++I I IG++EED
Sbjct: 482 NTQMVEKIIDRAITSLRANGVEINREQWIQDAEECDKAGSVVTCQSVIRAVIGIGIEEED 541
Query: 500 KKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLR 559
K TW+ D + C G++E ARAI++ A VF +KK++WL+AA EK+ G RESL ALL+
Sbjct: 542 CKHTWMEDADSCVSHGALECARAIYAHALQVFPSKKSVWLRAAYFEKNNGTRESLEALLQ 601
Query: 560 KAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSEEI 605
+AV +CP+AEVLWLMGAK KWLAGDVPA R IL A+ A PNSEEI
Sbjct: 602 RAVAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEI 647
Score = 365 (133.5 bits), Expect = 3.4e-141, Sum P(2) = 3.4e-141
Identities = 80/206 (38%), Positives = 111/206 (53%)
Query: 6 SKGRLDFLNSKPPANYIAGAGRGASSFTTRSDIGRTRTA--PPSTIIGLPRPKPRXXXXX 63
+K + FL P Y+ G GRGA+ FTTRSDIG R A P P +
Sbjct: 12 NKKKKPFLGMPAPLGYVPGLGRGATGFTTRSDIGPARDANDPVDDRHAPPGKRTVGDQMK 71
Query: 64 XXXXXXXXXXYQQNFDHFEGNDAGLFVNLEYDDEDKEADAVWESIDKLMDSRRKSRREAR 123
N+D F G LF + Y+ +D+EADA++ ++DK MD RRK RRE R
Sbjct: 72 KSQDDDDEDLNDTNYDEFNGYAGSLFSSGPYEKDDEEADAIYAALDKRMDERRKERRELR 131
Query: 124 LEEEIKNYRYKNPTIREEFADLKGKLSTVKAKEWERIPEIGDY-SRRNKRKRFDSFVPVP 182
+EEI+ YR + P I+++F+DLK KLS V EW IPE+GD ++R + R++ PVP
Sbjct: 132 EKEEIEKYRMERPKIQQQFSDLKRKLSEVTEDEWLSIPEVGDARNKRQRNPRYEKLTPVP 191
Query: 183 DSLLQKARQEQQHVIALDPSSRAAGG 208
DS K Q ++ ++DP GG
Sbjct: 192 DSFFAKHLQTGENHTSVDPLQGQFGG 217
Score = 176 (67.0 bits), Expect = 2.4e-44, Sum P(2) = 2.4e-44
Identities = 77/290 (26%), Positives = 119/290 (41%)
Query: 324 EACRLARPDEAKSVVAKGVRQIPKSANKIRALRMALDEIPDSVRLW--KALVEISS--EE 379
E C+ ++A S V+ G + A I A AL P +W A E ++ E
Sbjct: 540 EDCKHTWMEDADSCVSHGALEC---ARAIYA--HALQVFPSKKSVWLRAAYFEKNNGTRE 594
Query: 380 EARILLHRAVECCPLDVELWLALVRLETYG----VARSVLNKARKKLPKERAIWIAAAKL 435
LL RAV CP LWL + + ARS+L A + P IW+AA KL
Sbjct: 595 SLEALLQRAVAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKL 654
Query: 436 EANGNTSMVGKIIERGIRAL-QGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIG 494
E+ N ER R L + +MK + G++ + T ++
Sbjct: 655 ESENNE------YERARRLLAKARSSAPTARVFMKSVRLEWVLGNIEAAHELCTEALK-- 706
Query: 495 VDEEDKKRTWV--ADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRE 552
ED + W+ +EE + SI+ AR ++ ++WL ++LE+ G
Sbjct: 707 -HYEDFPKLWMMRGQIEEQSE--SIDRAREAYNQGLKKCPHSMSLWLLLSRLEEKVGQLT 763
Query: 553 SLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNS 602
A+L KA PQ+ LWL + ++ AG ++ +A PNS
Sbjct: 764 RARAILEKARLKNPQSPELWLESVRLEYRAGLKNIANTLMAKALQECPNS 813
Score = 141 (54.7 bits), Expect = 1.1e-40, Sum P(2) = 1.1e-40
Identities = 57/230 (24%), Positives = 99/230 (43%)
Query: 355 LRMALDEIPDSVRLW----KALVEISSEEEARILLHRAVECCPLDVELWLALVRLET--- 407
L+ A+ P + LW K+ AR +L A + P E+WLA V+LE+
Sbjct: 600 LQRAVAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENN 659
Query: 408 -YGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRD 465
Y AR +L KAR P R +++ + +LE GN ++ ++ + +
Sbjct: 660 EYERARRLLAKARSSAPTAR-VFMKSVRLEWVLGNIEAAHELCTEALKHYEDFPKL---- 714
Query: 466 TWMKEAEVADRAGSVVTCVAIITNTIEIGVDE-EDKKRTWV--ADVEECKKRGSIETARA 522
WM ++ +++ S+ G+ + W+ + +EE K G + ARA
Sbjct: 715 -WMMRGQIEEQSESIDRA----REAYNQGLKKCPHSMSLWLLLSRLEE--KVGQLTRARA 767
Query: 523 IFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLW 572
I A +WL++ +LE G + L+ KA+ CP + +LW
Sbjct: 768 ILEKARLKNPQSPELWLESVRLEYRAGLKNIANTLMAKALQECPNSGILW 817
Score = 117 (46.2 bits), Expect = 3.7e-38, Sum P(2) = 3.7e-38
Identities = 71/352 (20%), Positives = 130/352 (36%)
Query: 270 ARKIVRAVTKNSPKKPLGWIQXXXXXXXXXXXXXXXKLITKG-----CNMCPKNEDVWLE 324
AR+++ +N P WI K+I + N N + W++
Sbjct: 452 ARRVLNKARENIPTDRHIWITAAKLEEANGNTQMVEKIIDRAITSLRANGVEINREQWIQ 511
Query: 325 ACRLARPDEAKSVVAKGVRQIPKSANKIRA-LRMALDEIPDSVRLWK----ALVEISSEE 379
D+A SVV + IRA + + ++E D W + V + E
Sbjct: 512 DAEEC--DKAGSVVT--------CQSVIRAVIGIGIEE-EDCKHTWMEDADSCVSHGALE 560
Query: 380 EARILLHRAVECCPLDVELWLALVRLETYGVAR----SVLNKARKKLPKERAIWIAAAKL 435
AR + A++ P +WL E R ++L +A PK +W+ AK
Sbjct: 561 CARAIYAHALQVFPSKKSVWLRAAYFEKNNGTRESLEALLQRAVAHCPKAEVLWLMGAKS 620
Query: 436 E-ANGNTSMVGKIIERGIRAL-QGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEI 493
+ G+ I+ +A EE+ + E +RA ++ T +
Sbjct: 621 KWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARSSAPTARV 680
Query: 494 GVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRES 553
+ + + WV G+IE A + + A + +W+ Q+E+ +
Sbjct: 681 FM--KSVRLEWVL--------GNIEAAHELCTEALKHYEDFPKLWMMRGQIEEQSESIDR 730
Query: 554 LIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSEEI 605
+ + CP + LWL+ ++ + G + R IL++A P S E+
Sbjct: 731 AREAYNQGLKKCPHSMSLWLLLSRLEEKVGQLTRARAILEKARLKNPQSPEL 782
Score = 98 (39.6 bits), Expect = 3.7e-36, Sum P(2) = 3.7e-36
Identities = 34/116 (29%), Positives = 54/116 (46%)
Query: 332 DEAKSVVAKG-VRQIPKSANKIR-ALRMALDEIPDSVRLWKALVEISSE----EEARILL 385
D K + +G + + +S ++ R A L + P S+ LW L + + AR +L
Sbjct: 710 DFPKLWMMRGQIEEQSESIDRAREAYNQGLKKCPHSMSLWLLLSRLEEKVGQLTRARAIL 769
Query: 386 HRAVECCPLDVELWLALVRLE----TYGVARSVLNKARKKLPKERAIWIAAAKLEA 437
+A P ELWL VRLE +A +++ KA ++ P +W A LEA
Sbjct: 770 EKARLKNPQSPELWLESVRLEYRAGLKNIANTLMAKALQECPNSGILWSEAVFLEA 825
Score = 77 (32.2 bits), Expect = 5.9e-34, Sum P(2) = 5.9e-34
Identities = 40/176 (22%), Positives = 66/176 (37%)
Query: 264 LRDILKARKIVRAVTKNSPKKPLGWIQXXXXXXXXXXXXXXXKLITKGCNMCPKNEDVWL 323
L +I A ++ K+ P W+ + +G CP + +WL
Sbjct: 691 LGNIEAAHELCTEALKHYEDFPKLWMMRGQIEEQSESIDRAREAYNQGLKKCPHSMSLWL 750
Query: 324 EACRLARPDEAKSVVAKGVRQIPKSANKIRALRMALDEIPDSVRLWKALVEISS----EE 379
RL E K V Q+ ++ + R+ + P S LW V + +
Sbjct: 751 LLSRL----EEK------VGQLTRARAILEKARL---KNPQSPELWLESVRLEYRAGLKN 797
Query: 380 EARILLHRAVECCPLDVELWLALVRLETYGVARSVLNKARKKLPKERAIWIAAAKL 435
A L+ +A++ CP LW V LE ++ A KK + + +A AKL
Sbjct: 798 IANTLMAKALQECPNSGILWSEAVFLEARPQRKTKSVDALKKCEHDPHVLLAVAKL 853
>TAIR|locus:2128751 [details] [associations]
symbol:EMB2770 "EMBRYO DEFECTIVE 2770" species:3702
"Arabidopsis thaliana" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA;ISS] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA;IDA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0009409 "response to cold"
evidence=IMP] InterPro:IPR003107 InterPro:IPR010491
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF06424 PROSITE:PS50293
SMART:SM00386 GO:GO:0005634 EMBL:CP002687 GO:GO:0009409
Gene3D:1.25.40.10 InterPro:IPR019955 PROSITE:PS50053 GO:GO:0000398
EMBL:AL161496 EMBL:AF071527 GO:GO:0019252 HOGENOM:HOG000116247
KO:K12855 OMA:IWLRAAY InterPro:IPR027108 PANTHER:PTHR11246:SF1
GO:GO:0009568 EMBL:AY059720 EMBL:AY142510 IPI:IPI00530735
PIR:E85043 RefSeq:NP_192252.1 UniGene:At.3947
ProteinModelPortal:Q9ZT71 SMR:Q9ZT71 STRING:Q9ZT71 PRIDE:Q9ZT71
EnsemblPlants:AT4G03430.1 GeneID:827925 KEGG:ath:AT4G03430
TAIR:At4g03430 InParanoid:Q9ZT71 PhylomeDB:Q9ZT71
ProtClustDB:CLSN2685941 Genevestigator:Q9ZT71 Uniprot:Q9ZT71
Length = 1029
Score = 1133 (403.9 bits), Expect = 6.4e-115, P = 6.4e-115
Identities = 264/625 (42%), Positives = 365/625 (58%)
Query: 7 KGRLDFLNSKPPANYIAGAGRGASSFTTRSDIGRTRTAP--P--STI-------IGLPRP 55
K RLDFLNSKPP+NY+AG GRGA+ FTTRSDIG R AP P S + +G
Sbjct: 92 KPRLDFLNSKPPSNYVAGLGRGATGFTTRSDIGPARAAPDLPDRSALATAAAPGVGRGAG 151
Query: 56 KPRXXXXXXXXXXXXXXXYQQN--FDHFEGNDAGLFVNLEYDDEDKEADAVWESIDKLMD 113
KP Y +N FD FEGND GLF N EYD++DKEADA+WESID+ MD
Sbjct: 152 KP-SEAEAEDDEEAEEKRYDENQTFDEFEGNDVGLFANAEYDEDDKEADAIWESIDQRMD 210
Query: 114 SRRKSRREARLEEEIKNYRYKNPTIREEFADLKGKLSTVKAKEWERIPEIGDYSRRNKRK 173
SRRK RREA+L+EEI+ YR NP I E+FADLK KL T+ A EW+ IPEIGDYS RNK+K
Sbjct: 211 SRRKDRREAKLKEEIEKYRASNPKITEQFADLKRKLHTLSADEWDSIPEIGDYSLRNKKK 270
Query: 174 RFDSFVPVPDSLLQKARQEQQHVIALDPSSRAAGGAESV-----VTDLTAVGEGRGKILT 228
+F+SFVP+PD+LL+KA++E++ V+ALDP SRAAGG+E+ VTDLTAVGEGRG +L+
Sbjct: 271 KFESFVPIPDTLLEKAKKEKELVMALDPKSRAAGGSETPWGQTPVTDLTAVGEGRGTVLS 330
Query: 229 LKLDGISDSVTGLTVFDPSGYLTRMNDLKITTNSELRDILKARKIVRAVTKNSPKKPLGW 288
LKLD +SDSV+G TV DP GYLT + +K TT+ E+ D +AR + +++T+++PK P GW
Sbjct: 331 LKLDNLSDSVSGQTVVDPKGYLTDLKSMKRTTDEEIYDRNRARLLYKSLTQSNPKNPNGW 390
Query: 289 IQXXXXXXXXXXXXXXXKLITKGCNMCPKNEDVWLEACRLARPDEAKSVVAKGVRQIPKS 348
I I +GC CPKNEDVWLEACRLA P++AK V+AKGV+ IP
Sbjct: 391 IAAARVEEVDGKIKAARFQIQRGCEECPKNEDVWLEACRLANPEDAKGVIAKGVKLIP-- 448
Query: 349 ANKIRALRMALDEIPDSVRLW--KALVEISSEEEARILLHRAVECCPLDVELWLALVRLE 406
+SV+LW A +E E ++R+L + +E P V LW A+V L
Sbjct: 449 ---------------NSVKLWLEAAKLEHDVENKSRVL-RKGLEHIPDSVRLWKAVVELA 492
Query: 407 TYGVARSVLNKARKKLPKERAIWIAAAKLEANGNTSMVGKIIERGIRALQGEEVVIDRDT 466
AR +L++A + P +W+A A+LE + K++ + L E +
Sbjct: 493 NEEDARILLHRAVECCPLHLELWVALARLETYAESK---KVLNKAREKLPKEPAIWITAA 549
Query: 467 WMKEAE-VADRAGSVVTCVA-IITNTIEIGVDEED---KKRTWVADVEECKKRGSIETAR 521
++EA D A V II I+ + E + W+++ E C++ GS+ T +
Sbjct: 550 KLEEANGKLDEANDNTAMVGKIIDRGIKT-LQREGVVIDRENWMSEAEACERVGSVATCQ 608
Query: 522 AIFSPACTVFLT---KKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKE 578
AI + + +K W+ A K G E+ A+ A++ + +WL A+
Sbjct: 609 AIIKNTIGIGVEEEDRKRTWVADADECKKRGSIETARAIYAHALSVFLTKKSIWLKAAQL 668
Query: 579 KWLAGDVPATRDILQEAYAAIPNSE 603
+ G + +L++A +P +E
Sbjct: 669 EKSHGSRESLDALLRKAVTYVPQAE 693
Score = 1013 (361.7 bits), Expect = 3.3e-102, P = 3.3e-102
Identities = 210/307 (68%), Positives = 239/307 (77%)
Query: 307 LITKGCNMCPKNEDVWLEACRLARPDEAKSVVAKGVRQIPKSANKIRALRMALDEIPDSV 366
+I KG + P + +WLEA +L E NK R LR L+ IPDSV
Sbjct: 439 VIAKGVKLIPNSVKLWLEAAKLEHDVE----------------NKSRVLRKGLEHIPDSV 482
Query: 367 RLWKALVEISSEEEARILLHRAVECCPLDVELWLALVRLETYGVARSVLNKARKKLPKER 426
RLWKA+VE+++EE+ARILLHRAVECCPL +ELW+AL RLETY ++ VLNKAR+KLPKE
Sbjct: 483 RLWKAVVELANEEDARILLHRAVECCPLHLELWVALARLETYAESKKVLNKAREKLPKEP 542
Query: 427 AIWIAAAKLE-ANG-------NTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAG 478
AIWI AAKLE ANG NT+MVGKII+RGI+ LQ E VVIDR+ WM EAE +R G
Sbjct: 543 AIWITAAKLEEANGKLDEANDNTAMVGKIIDRGIKTLQREGVVIDRENWMSEAEACERVG 602
Query: 479 SVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIW 538
SV TC AII NTI IGV+EED+KRTWVAD +ECKKRGSIETARAI++ A +VFLTKK+IW
Sbjct: 603 SVATCQAIIKNTIGIGVEEEDRKRTWVADADECKKRGSIETARAIYAHALSVFLTKKSIW 662
Query: 539 LKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAA 598
LKAAQLEKS+G RESL ALLRKAVTY PQAEVLWLMGAKEKWLAGDVPA R ILQEAYAA
Sbjct: 663 LKAAQLEKSHGSRESLDALLRKAVTYVPQAEVLWLMGAKEKWLAGDVPAARAILQEAYAA 722
Query: 599 IPNSEEI 605
IPNSEEI
Sbjct: 723 IPNSEEI 729
Score = 133 (51.9 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 59/247 (23%), Positives = 101/247 (40%)
Query: 335 KSVVAKGVRQIPKSANKIRALRMALDEIPDSVRLWKALVEISSE----EEARILLHRAVE 390
KS + + R++ + R L L + P +LW L ++ E+AR ++
Sbjct: 765 KSAIVE--RELGNVEEERRLLNEGLKQFPTFFKLWLMLGQLEERFKHLEQARKAYDTGLK 822
Query: 391 CCPLDVELWLALVRLE--TYGV--ARSVLNKARKKLPKERAIWIAAAKLEA-NGNTSMVG 445
CP + LWL+L LE G+ AR++L ARKK P +W+AA + E + N
Sbjct: 823 HCPHCIPLWLSLADLEEKVNGLNKARAILTTARKKNPGGAELWLAAIRAELRHDNKREAE 882
Query: 446 KIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWV 505
++ + ++ ++ W + E+A R + + D + V
Sbjct: 883 HLMSKALQDCPKSGIL-----WAADIEMAPRPRRKTKSIDAMKKC-----DRDPHVTIAV 932
Query: 506 ADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYC 565
A + K+ +E ARA F A TV + W + E +G E ++ K V
Sbjct: 933 AKLFWQDKK--VEKARAWFERAVTVGPDIGDFWALFYKFELQHGSDEDRKEVVAKCVACE 990
Query: 566 PQAEVLW 572
P+ W
Sbjct: 991 PKHGEKW 997
Score = 126 (49.4 bits), Expect = 0.00034, P = 0.00034
Identities = 57/230 (24%), Positives = 96/230 (41%)
Query: 355 LRMALDEIPDSVRLW----KALVEISSEEEARILLHRAVECCPLDVELWLALVRLETYGV 410
LR A+ +P + LW K AR +L A P E+WLA +LE
Sbjct: 682 LRKAVTYVPQAEVLWLMGAKEKWLAGDVPAARAILQEAYAAIPNSEEIWLAAFKLEFENK 741
Query: 411 ----ARSVLNKARKKLPKERAIWIAAAKLEAN-GNTSMVGKIIERGIRALQGEEVVIDRD 465
AR +L KAR++ ER +W+ +A +E GN +++ G++ +
Sbjct: 742 EPERARMLLAKARERGGTER-VWMKSAIVERELGNVEEERRLLNEGLK-----QFPTFFK 795
Query: 466 TWMKEAEVADRAGSVVTCVAIITNTIEIGVDE-EDKKRTWV--ADVEECKKRGSIETARA 522
W+ ++ +R + + G+ W+ AD+EE K + ARA
Sbjct: 796 LWLMLGQLEERFKHLEQA----RKAYDTGLKHCPHCIPLWLSLADLEE--KVNGLNKARA 849
Query: 523 IFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLW 572
I + A +WL A + E + + L+ KA+ CP++ +LW
Sbjct: 850 ILTTARKKNPGGAELWLAAIRAELRHDNKREAEHLMSKALQDCPKSGILW 899
Score = 124 (48.7 bits), Expect = 0.00056, P = 0.00056
Identities = 73/360 (20%), Positives = 132/360 (36%)
Query: 262 SELRDILKARKIVRAVTKNSPKKPLGWIQXXXXXXXXXX-------XXXXXKLITKGCNM 314
+ L +++K++ + PK+P WI K+I +G
Sbjct: 519 ARLETYAESKKVLNKAREKLPKEPAIWITAAKLEEANGKLDEANDNTAMVGKIIDRGIKT 578
Query: 315 CPKNEDVWLEACRLARPDEAKSVVAKGVRQIPKSANKIRALRMALDEIPDSVRLWKALVE 374
+ E V ++ R EA++ G ++ K + + ++E D R W A +
Sbjct: 579 LQR-EGVVID--RENWMSEAEACERVGSVATCQAIIK-NTIGIGVEE-EDRKRTWVADAD 633
Query: 375 I----SSEEEARILLHRAVECCPLDVELWLALVRLE-TYGVARSV---LNKARKKLPKER 426
S E AR + A+ +WL +LE ++G S+ L KA +P+
Sbjct: 634 ECKKRGSIETARAIYAHALSVFLTKKSIWLKAAQLEKSHGSRESLDALLRKAVTYVPQAE 693
Query: 427 AIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVA 485
+W+ AK + G+ I++ A+ E + W+ ++
Sbjct: 694 VLWLMGAKEKWLAGDVPAARAILQEAYAAIPNSEEI-----WLAAFKLEFENKEPERARM 748
Query: 486 IITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLE 545
++ E G E R W+ ++ G++E R + + F T +WL QLE
Sbjct: 749 LLAKARERGGTE----RVWMKSAIVERELGNVEEERRLLNEGLKQFPTFFKLWLMLGQLE 804
Query: 546 KSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSEEI 605
+ + E + +CP LWL A + + R IL A P E+
Sbjct: 805 ERFKHLEQARKAYDTGLKHCPHCIPLWLSLADLEEKVNGLNKARAILTTARKKNPGGAEL 864
>UNIPROTKB|I3L7Q4 [details] [associations]
symbol:PRPF6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0071001 "U4/U6 snRNP" evidence=IEA] [GO:0050681 "androgen
receptor binding" evidence=IEA] [GO:0046540 "U4/U6 x U5 tri-snRNP
complex" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043021 "ribonucleoprotein complex binding" evidence=IEA]
[GO:0006403 "RNA localization" evidence=IEA] [GO:0005682 "U5 snRNP"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IEA] InterPro:IPR003107
InterPro:IPR010491 InterPro:IPR011990 Pfam:PF06424 SMART:SM00386
GO:GO:0045944 GO:GO:0005682 GO:GO:0003723 GO:GO:0003713
Gene3D:1.25.40.10 GO:GO:0043021 GO:GO:0000398 GO:GO:0071013
GO:GO:0046540 GO:GO:0006403 GO:GO:0071001 OMA:IWLRAAY
InterPro:IPR027108 PANTHER:PTHR11246:SF1
GeneTree:ENSGT00550000075016 Ensembl:ENSSSCT00000022436
Uniprot:I3L7Q4
Length = 783
Score = 764 (274.0 bits), Expect = 3.8e-112, Sum P(2) = 3.8e-112
Identities = 168/387 (43%), Positives = 228/387 (58%)
Query: 215 DLTAVGEGRGKILTLKLDGISDSVTGLTVFDPSGYLTRMNDLKITTNSELRDILKARKIV 274
D+ +G+ R ++ ++L +SDSV+G TV DP GYLT +N + T ++ DI KAR ++
Sbjct: 234 DMRKIGQARNTLMDMRLSQVSDSVSGQTVVDPKGYLTDLNSMIPTHGGDINDIKKARLLL 293
Query: 275 RAVTKNSPKKPLGWIQXXXXXXXXXXXXXXXKLITKGCNMCPKNEDVWLEACRLARPDEA 334
++V + +P P WI LI KG MCPK+EDVWLEA RL +P
Sbjct: 294 KSVRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWLEAARL-QPGVL 352
Query: 335 KSVVAKGVRQIPKSANKI-RALRMALDEIPDSVRLWKALVEISSEEEARILLHRAVECCP 393
+ A + ++ ++ R AL+ +P+SVRLWKA VE+ E+ARI+L RAVECCP
Sbjct: 353 IYIRAAELETDIRAKKRVLRKPSPALEHVPNSVRLWKAAVELEEPEDARIMLSRAVECCP 412
Query: 394 LDVELWLALVRLETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGI 452
VELWLAL RLETY AR VLNK R IWI AAKLE ANGNT MV KII+R I
Sbjct: 413 TSVELWLALARLETYENARKVLNKXRH-------IWITAAKLEEANGNTQMVEKIIDRAI 465
Query: 453 RALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECK 512
+L+ V I+R+ W+++AE D+AGSV TC A++ I IG++EED+K TW+ D +
Sbjct: 466 TSLRANGVEINREQWIQDAEECDKAGSVATCQAVMRAVIGIGIEEEDRKHTWMEDADS-- 523
Query: 513 KRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQA-EVL 571
+ A A F +K W +++ + G + A +A + + EVL
Sbjct: 524 -KAFAHEAFAHFEVVALEHFQRKEEWFRSSAFFE--GTASLVSATCPRAGAHSALSREVL 580
Query: 572 WLMGAKEKWLAGDVPATRDILQEAYAA 598
WLMGAK KWLAGDVPA R IL A+ A
Sbjct: 581 WLMGAKSKWLAGDVPAARSILALAFQA 607
Score = 363 (132.8 bits), Expect = 3.8e-112, Sum P(2) = 3.8e-112
Identities = 82/215 (38%), Positives = 116/215 (53%)
Query: 6 SKGRLDFLNSKPPANYIAGAGRGASSFTTRSDIGRTRTA-PPSTIIGLPRPKPRXXXXXX 64
+K + FL P Y+ G GRGA+ FTTRSDIG R A P P P R
Sbjct: 2 NKKKKPFLGMPAPLGYVPGLGRGATGFTTRSDIGPARDANDPVDDRHAP-PGKRTVGDQM 60
Query: 65 XXXXXXXXXYQQ----NFDHFEGNDAGLFVNLEYDDEDKEADAVWESIDKLMDSRRKSRR 120
+ N+D F G LF + Y+ +D+EADA++ ++DK MD RRK RR
Sbjct: 61 KKSQAADDDDEDLNDTNYDEFNGYAGSLFSSGPYEKDDEEADAIYAALDKRMDERRKERR 120
Query: 121 EARLEEEIKNYRYKNPTIREEFADLKGKLSTVKAKEWERIPEIGDY-SRRNKRKRFDSFV 179
E R +EEI+ YR + P I+++F+DLK KL+ V +EW IPE+GD ++R + R++
Sbjct: 121 EQREKEEIEKYRMERPKIQQQFSDLKRKLAEVTEEEWLSIPEVGDARNKRQRNPRYEKLT 180
Query: 180 PVPDSLLQKARQEQQHVIALDPSSRAAGGAESVVT 214
PVPDS K Q ++ ++DP GG + T
Sbjct: 181 PVPDSFFAKHLQTGENHTSVDPRQTQFGGXGGLNT 215
Score = 72 (30.4 bits), Expect = 1.4e-33, Sum P(2) = 1.4e-33
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 537 IWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLW 572
+WL++ +LE G + L+ KA+ CP + VLW
Sbjct: 713 LWLESVRLEYRAGLKNIASTLMAKALQECPSSGVLW 748
Score = 66 (28.3 bits), Expect = 6.0e-33, Sum P(2) = 6.0e-33
Identities = 22/93 (23%), Positives = 44/93 (47%)
Query: 504 WVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLR-KAV 562
W+ + G + AR+I + A + +W A + + C +A +R KA
Sbjct: 581 WLMGAKSKWLAGDVPAARSILALAFQARGRVERLW--AGRRLGAGRCLVDPLAWIRXKAR 638
Query: 563 TYCPQAEVLWLMGAKEKWLAGDVPATRDILQEA 595
+ P A V ++ K +W+ G++ A +++ +EA
Sbjct: 639 SSAPTARV-FMKSVKLEWVLGNLAAAQELCEEA 670
Score = 61 (26.5 bits), Expect = 2.0e-32, Sum P(2) = 2.0e-32
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 394 LDVELWLALVRLE----TYGVARSVLNKARKKLPKERAIWIAAAKLEA 437
L + LWL VRLE +A +++ KA ++ P +W A LEA
Sbjct: 709 LRLGLWLESVRLEYRAGLKNIASTLMAKALQECPSSGVLWSEAIFLEA 756
Score = 61 (26.5 bits), Expect = 2.0e-32, Sum P(2) = 2.0e-32
Identities = 23/76 (30%), Positives = 32/76 (42%)
Query: 268 LKARKIVRAV-TKNSPKKPLG-WIQXXXXXXXXXXXXXXXKLITKGCNMCPKNEDVWLEA 325
L R AV ++ P+ LG W++ L+ K CP + +W EA
Sbjct: 692 LAERGSAAAVASRELPELRLGLWLESVRLEYRAGLKNIASTLMAKALQECPSSGVLWSEA 751
Query: 326 CRL-ARPD-EAKSVVA 339
L ARP + KSV A
Sbjct: 752 IFLEARPQRKTKSVDA 767
Score = 61 (26.5 bits), Expect = 2.0e-32, Sum P(2) = 2.0e-32
Identities = 24/94 (25%), Positives = 41/94 (43%)
Query: 346 PKSANKIRALRMALDEIPD-SVRLWKALVEISS----EEEARILLHRAVECCPLDVELWL 400
P A + A +A E+P+ + LW V + + A L+ +A++ CP LW
Sbjct: 690 PHLAERGSAAAVASRELPELRLGLWLESVRLEYRAGLKNIASTLMAKALQECPSSGVLWS 749
Query: 401 ALVRLETYGVARSVLNKARKKLPKERAIWIAAAK 434
+ LE ++ A KK + + +A AK
Sbjct: 750 EAIFLEARPQRKTKSVDALKKCEHDPHVLLAVAK 783
Score = 50 (22.7 bits), Expect = 2.8e-31, Sum P(2) = 2.8e-31
Identities = 12/50 (24%), Positives = 24/50 (48%)
Query: 557 LLRKAVTYC-PQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSEEI 605
LL K+V P W+ A+ + + G + R+++ + P SE++
Sbjct: 291 LLLKSVRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDV 340
>FB|FBgn0036828 [details] [associations]
symbol:CG6841 species:7227 "Drosophila melanogaster"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS]
[GO:0005684 "U2-type spliceosomal complex" evidence=ISS]
[GO:0005682 "U5 snRNP" evidence=ISS] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=IC] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR003107 InterPro:IPR010491 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF06424 PROSITE:PS50293 SMART:SM00386
EMBL:AE014296 GO:GO:0022008 GO:GO:0005682 Gene3D:1.25.40.10
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0000381 KO:K12855
OMA:IWLRAAY InterPro:IPR027108 PANTHER:PTHR11246:SF1
GeneTree:ENSGT00550000075016 FlyBase:FBgn0036828 EMBL:BT021415
RefSeq:NP_649073.1 UniGene:Dm.11665 SMR:Q9VVU6 MINT:MINT-316737
STRING:Q9VVU6 EnsemblMetazoa:FBtr0075068 GeneID:40064
KEGG:dme:Dmel_CG6841 UCSC:CG6841-RA InParanoid:Q9VVU6
GenomeRNAi:40064 NextBio:816818 Uniprot:Q9VVU6
Length = 931
Score = 989 (353.2 bits), Expect = 1.2e-99, P = 1.2e-99
Identities = 201/406 (49%), Positives = 269/406 (66%)
Query: 215 DLTAVGEGRGKILTLKLDGISDSVTGLTVFDPSGYLTRMNDLKITTNSELRDILKARKIV 274
DL +G+ R ++ +KL +SDSVTG TV DP GYLT + + T ++ DI KAR ++
Sbjct: 229 DLRKIGQARNTLMNVKLSQVSDSVTGQTVVDPKGYLTDLQSMIPTYGGDINDIKKARLLL 288
Query: 275 RAVTKNSPKKPLGWIQXXXXXXXXXXXXXXXKLITKGCNMCPKNEDVWLEACRLARPDEA 334
++V + +P P WI LI +GC M ++ED+WLEA RL PD A
Sbjct: 289 KSVRETNPNHPPAWIASARLEEVTGKVQMARNLIMRGCEMNIQSEDLWLEAARLQPPDTA 348
Query: 335 KSVVAKGVRQIP-------KSAN-------KIRALRMALDEIPDSVRLWKALVEISSEEE 380
K+V+A+ R IP K+A+ K R R AL+ IP+SVRLWKA VE+ + ++
Sbjct: 349 KAVIAQAARHIPTSVRIWIKAADLESETKAKRRVFRKALEHIPNSVRLWKAAVELENPDD 408
Query: 381 ARILLHRAVECCPLDVELWLALVRLETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANG 439
ARILL RAVECC VELWLAL RLETY AR VLNKAR+ +P +R IW AAKLE ANG
Sbjct: 409 ARILLSRAVECCNTSVELWLALARLETYENARKVLNKARENIPTDRQIWTTAAKLEEANG 468
Query: 440 NTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEED 499
N MV KII+R + +L V I+RD W +EA A+++G+V C +I+ I IGV+EED
Sbjct: 469 NIHMVEKIIDRSLTSLTVNGVEINRDQWFQEAIEAEKSGAVNCCQSIVKAVIGIGVEEED 528
Query: 500 KKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLR 559
+K+TW+ D E C K + E ARA+++ A +F +KK+IWL+AA EK++G RESL ALL+
Sbjct: 529 RKQTWIDDAEFCAKENAFECARAVYAHALQIFPSKKSIWLRAAYFEKNHGTRESLEALLQ 588
Query: 560 KAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSEEI 605
+AV +CP++E+LWLMGAK KW+AGDVPA R IL A+ A PNSE+I
Sbjct: 589 RAVAHCPKSEILWLMGAKSKWMAGDVPAARGILSLAFQANPNSEDI 634
Score = 761 (272.9 bits), Expect = 1.7e-75, P = 1.7e-75
Identities = 197/621 (31%), Positives = 305/621 (49%)
Query: 3 MLGSKGRLDFLNSKPPANYIAGAGRGASSFTTRSDIGRTRTAPPSTIIGLPRPKPRXXXX 62
++ ++ + FL P Y+AG GRGA+ FTTRSDIG R A + P +
Sbjct: 8 VIANRNKKHFLGVPAPLGYVAGVGRGATGFTTRSDIGPARDANDVSDDRHAPPATKRKKK 67
Query: 63 XXXXXXXXXXXYQQNFDHFEGNDAGLFVNLEYDDEDKEADAVWESIDKLMDSRRKSRREA 122
N+D F G LF YD +D+EADA+++SIDK MD +RK R+
Sbjct: 68 DEEEEEDEDLN-DSNYDEFSGYSGSLFSKDPYDKDDEEADAIYDSIDKRMDEKRKEYRDR 126
Query: 123 RLEEEIKNYRYKNPTIREEFADLKGKLSTVKAKEWERIPEIGDYSRRNKRK-RFDSFVPV 181
RL E+++ YR + P I+++F+DLK L++V ++EW IPE+GD R +R R + F P+
Sbjct: 127 RLREDLERYRQERPKIQQQFSDLKRSLASVTSEEWSTIPEVGDSRNRKQRNPRAEKFTPL 186
Query: 182 PDSLLQKARQEQQHVIALDPSSRAAGGAESVVT----------DLTAVGEGRGKILTLKL 231
PDSL+ + + LDPSS A V T DL +G+ R ++ +KL
Sbjct: 187 PDSLISRNLGGESSS-TLDPSSGLASMVPGVATPGMLTPTGDLDLRKIGQARNTLMNVKL 245
Query: 232 DGISDSVTGLTVFDPSGYLTRMNDLKITTNSELRDILKARKIVRAVTKNSPKKPLGWIQX 291
+SDSVTG TV DP GYLT + + T ++ DI KAR ++++V + +P P WI
Sbjct: 246 SQVSDSVTGQTVVDPKGYLTDLQSMIPTYGGDINDIKKARLLLKSVRETNPNHPPAWIAS 305
Query: 292 XXXXXXXXXXXXXXKLITKGCNMCPKNEDVWLEACRLARPDEAKSVVAKGVRQIPKSANK 351
LI +GC M ++ED+WLEA RL PD AK+V+A+ R IP S
Sbjct: 306 ARLEEVTGKVQMARNLIMRGCEMNIQSEDLWLEAARLQPPDTAKAVIAQAARHIPTS--- 362
Query: 352 IRALRMALDEIPDSVRLWKALVEISSEEEA-RILLHRAVECCPLDVELWLALVRLETYGV 410
VR+W ++ SE +A R + +A+E P V LW A V LE
Sbjct: 363 --------------VRIWIKAADLESETKAKRRVFRKALEHIPNSVRLWKAAVELENPDD 408
Query: 411 ARSVLNKARKKLPKERAIWIAAAKLEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKE 470
AR +L++A + +W+A A+LE N K++ + R E + DR W
Sbjct: 409 ARILLSRAVECCNTSVELWLALARLETYENAR---KVLNKA-R----ENIPTDRQIWTTA 460
Query: 471 AEVADRAGSVVTCVAIITNTI-EIGVDEEDKKRT-WVADVEECKKRGSIETARAIFSPAC 528
A++ + G++ II ++ + V+ + R W + E +K G++ ++I
Sbjct: 461 AKLEEANGNIHMVEKIIDRSLTSLTVNGVEINRDQWFQEAIEAEKSGAVNCCQSIVKAVI 520
Query: 529 TVFLT---KKNIWLKAAQL---EKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLA 582
+ + +K W+ A+ E ++ C ++ A A+ P + +WL A +
Sbjct: 521 GIGVEEEDRKQTWIDDAEFCAKENAFECARAVYA---HALQIFPSKKSIWLRAAYFEKNH 577
Query: 583 GDVPATRDILQEAYAAIPNSE 603
G + +LQ A A P SE
Sbjct: 578 GTRESLEALLQRAVAHCPKSE 598
Score = 140 (54.3 bits), Expect = 9.2e-06, P = 9.2e-06
Identities = 60/259 (23%), Positives = 104/259 (40%)
Query: 358 ALDEIPDSVRLW--KALVEIS--SEEEARILLHRAVECCPLDVELWLALVRLETYG---- 409
AL P +W A E + + E LL RAV CP LWL + +
Sbjct: 556 ALQIFPSKKSIWLRAAYFEKNHGTRESLEALLQRAVAHCPKSEILWLMGAKSKWMAGDVP 615
Query: 410 VARSVLNKARKKLPKERAIWIAAAKLEA-NGNTSMVGKIIERGIRALQGEEVVIDRDTWM 468
AR +L+ A + P IW+AA KLE+ N +++ + + V+ M
Sbjct: 616 AARGILSLAFQANPNSEDIWLAAVKLESENSEYERARRLLAKARGSAPTPRVM------M 669
Query: 469 KEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWV--ADVEECKKRGSIETARAIFSP 526
K A + + ++ +E+ D + W+ +EE ++R + A A ++
Sbjct: 670 KSARLEWALEKFDEALRLLEEAVEVF---PDFPKLWMMKGQIEEQQRR--TDDAAATYTL 724
Query: 527 ACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVP 586
T +W+ +A LE+ G ++L + P+ VLWL + + AG
Sbjct: 725 GLKKCPTSIPLWILSANLEERKGVLTKARSILERGRLRNPKVAVLWLEAIRVELRAGLKE 784
Query: 587 ATRDILQEAYAAIPNSEEI 605
++ A PN+ E+
Sbjct: 785 IASTMMARALQECPNAGEL 803
Score = 133 (51.9 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 62/232 (26%), Positives = 104/232 (44%)
Query: 355 LRMALDEIPDSVRLW----KALVEISSEEEARILLHRAVECCPLDVELWLALVRLET--- 407
L+ A+ P S LW K+ AR +L A + P ++WLA V+LE+
Sbjct: 587 LQRAVAHCPKSEILWLMGAKSKWMAGDVPAARGILSLAFQANPNSEDIWLAAVKLESENS 646
Query: 408 -YGVARSVLNKARKKLPKERAIWIAAAKLEANGNTSMVGKIIERGIRALQGEEVVIDRD- 465
Y AR +L KAR P R + + +A+LE + K E +R L+ E V + D
Sbjct: 647 EYERARRLLAKARGSAPTPR-VMMKSARLEW-----ALEKFDE-ALRLLE-EAVEVFPDF 698
Query: 466 --TWMKEAEVADRAGSVVTCVAIITNTIEIGVDE-EDKKRTWV--ADVEECKKRGSIETA 520
WM + ++ ++ A T +G+ + W+ A++EE ++G + A
Sbjct: 699 PKLWMMKGQIEEQQRRTDDAAATYT----LGLKKCPTSIPLWILSANLEE--RKGVLTKA 752
Query: 521 RAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLW 572
R+I +WL+A ++E G +E ++ +A+ CP A LW
Sbjct: 753 RSILERGRLRNPKVAVLWLEAIRVELRAGLKEIASTMMARALQECPNAGELW 804
Score = 126 (49.4 bits), Expect = 0.00030, P = 0.00030
Identities = 58/223 (26%), Positives = 92/223 (41%)
Query: 261 NSELRDILKARKIVRAVTKNSPKKPLGWIQXXXXXXXXXXXXXXXKLITKGCNMCPKNED 320
N R+ L+A + RAV + PK + W+ +++ P +ED
Sbjct: 576 NHGTRESLEAL-LQRAVA-HCPKSEILWLMGAKSKWMAGDVPAARGILSLAFQANPNSED 633
Query: 321 VWLEACRLARPDEAKSVVAKGVRQIPKSANKIRALRMALDEIPDSVRLWKALVEISSEEE 380
+WL A +L + S + R + K+ R+ + S RL AL + +E
Sbjct: 634 IWLAAVKL---ESENSEYERARRLLAKARGSAPTPRVMMK----SARLEWALEKF---DE 683
Query: 381 ARILLHRAVECCPLDVELWLALVRLETY----GVARSVLNKARKKLPKERAIWIAAAKLE 436
A LL AVE P +LW+ ++E A + KK P +WI +A LE
Sbjct: 684 ALRLLEEAVEVFPDFPKLWMMKGQIEEQQRRTDDAAATYTLGLKKCPTSIPLWILSANLE 743
Query: 437 AN-GNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAG 478
G + I+ERG L+ +V + W++ V RAG
Sbjct: 744 ERKGVLTKARSILERG--RLRNPKVAV---LWLEAIRVELRAG 781
>DICTYBASE|DDB_G0272374 [details] [associations]
symbol:prpf6 "pre-mRNA processing factor 6"
species:44689 "Dictyostelium discoideum" [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA;ISS] [GO:0046540 "U4/U6 x
U5 tri-snRNP complex" evidence=ISS] InterPro:IPR003107
InterPro:IPR010491 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF06424 PROSITE:PS50293 SMART:SM00386 dictyBase:DDB_G0272374
GenomeReviews:CM000151_GR eggNOG:COG0457 Gene3D:1.25.40.10
EMBL:AAFI02000008 GO:GO:0000398 GO:GO:0046540 KO:K12855 OMA:IWLRAAY
InterPro:IPR027108 PANTHER:PTHR11246:SF1 RefSeq:XP_645169.1
ProteinModelPortal:Q55A15 STRING:Q55A15 EnsemblProtists:DDB0233221
GeneID:8618341 KEGG:ddi:DDB_G0272374 InParanoid:Q55A15
ProtClustDB:CLSZ2729243 Uniprot:Q55A15
Length = 1014
Score = 923 (330.0 bits), Expect = 1.1e-92, P = 1.1e-92
Identities = 214/521 (41%), Positives = 307/521 (58%)
Query: 106 ESIDKL-MDSRRKSRREARLEEEIKNYRYKNPTIREE-FADLK--GKLSTV-KAKEWERI 160
E+ ++L ++ +R+SR ++++ +++ + T+ E+ +A L G LS + K+ E
Sbjct: 130 EANEQLKIEKQRESR--PKIQQHLQDLKQDLATVSEDQWASLPDAGDLSRRNQRKKMEIY 187
Query: 161 PEIGDYSRRNKRKRFDSFVPVPDSLLQKARQEQQHVIALDPSSRAAGGAESVVTDLTAVG 220
+ D + +++ S+LQ I L ++G + TDLT VG
Sbjct: 188 TPVPDSVLERAKSENETY-----SILQTNNAMTAPGIGLSGIDNSSGTS---TTDLTQVG 239
Query: 221 EGRGKILTLKLDGISDSVTGLTVFDPSGYLTRMNDLKITTNSELRDILKARKIVRAVTKN 280
R +L LKL +SD+V+G T DP GYLT + +I +++E+ DI KAR + ++ T +
Sbjct: 240 SARKTVLDLKLHQVSDNVSGKTCVDPKGYLTDLRSKRIASDAEVGDIKKARLLFKSATTS 299
Query: 281 SPKKPLGWIQXXXXXXXXXXXXXXXKLITKGCNMCPKNEDVWLEACRLARPDEAKSVVAK 340
+PK WI K+I + C CP +E+VW+E L PD AK V+A+
Sbjct: 300 NPKHSPSWIAAAKLEVLAGKIVDARKIIAQACKECPTSEEVWIENANLQTPDNAKIVLAQ 359
Query: 341 GVRQIPKS-------AN-------KIRALRMALDEIPDSVRLWKALVEISSEEEARILLH 386
VR IP S AN K R LR AL+ IP SV+LWK VE+ E+ARILL
Sbjct: 360 AVRVIPHSVKIWLYAANLEKQLKMKKRVLRRALEFIPTSVKLWKEAVELEEPEDARILLG 419
Query: 387 RAVECCPLDVELWLALVRLETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVG 445
RAVEC P +++LWLAL LETY AR VLNKAR+ LP IWI+AA+LE + G V
Sbjct: 420 RAVECVPDNIDLWLALANLETYEKAREVLNKARQALPSSSEIWISAAQLEESQGKNDNVN 479
Query: 446 KIIERGIRAL-QGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTW 504
KII++ I++L G V++RD W+ EAE +++ VTC AII TI +G++++D+KR W
Sbjct: 480 KIIKKAIKSLCSGVMNVMNRDKWIAEAEKSEKNQYYVTCQAIIYETIGMGIEDDDRKRIW 539
Query: 505 VADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTY 564
V D EEC RGSI+TA AI++ ++F TKK++WLK AQLEK +G +E+L L KA
Sbjct: 540 VIDAEECLSRGSIKTANAIYAHILSIFPTKKSVWLKVAQLEKQHGTKETLDQTLEKATQK 599
Query: 565 CPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSEEI 605
CPQ E LWLM AKEKW++GDV R+IL +A+ P SE I
Sbjct: 600 CPQYENLWLMYAKEKWISGDVAKAREILAQAFKFNPGSENI 640
Score = 727 (261.0 bits), Expect = 6.7e-72, P = 6.7e-72
Identities = 201/633 (31%), Positives = 304/633 (48%)
Query: 1 MVMLGSKGRLDFLNSKPPANYIAGAGRGASSFTTRSDIGRTRTAPPSTIIGLPRPKPRXX 60
M + K + FL +PP YIAG GRGA FTTR DIG TA S I G P +
Sbjct: 1 MAHILQKDKRFFLYQEPPPGYIAGFGRGAVGFTTRLDIG---TARNSDIPGFPGRDDKSK 57
Query: 61 XXXXXXXXXXXXXYQQN----------FDHFEGNDAG-LF-VNLEYDDEDKEADAVWESI 108
Q N FD FEG+ LF N YD EDK+ADA+W++I
Sbjct: 58 LTSNTGGEDEDEDEQSNKGGGGGDNGRFDEFEGSSTDKLFDSNKGYDQEDKDADAIWDAI 117
Query: 109 DKLMDSRRKSRREARLEEEIKNYRYKNPTIREEFADLKGKLSTVKAKEWERIPEIGDYSR 168
D MDSRRK +REA + +I+ R P I++ DLK L+TV +W +P+ GD SR
Sbjct: 118 DSKMDSRRKKKREANEQLKIEKQRESRPKIQQHLQDLKQDLATVSEDQWASLPDAGDLSR 177
Query: 169 RNKRKRFDSFVPVPDSLLQKARQEQQ--HVIALDPSSRAAG-GAESV-------VTDLTA 218
RN+RK+ + + PVPDS+L++A+ E + ++ + + A G G + TDLT
Sbjct: 178 RNQRKKMEIYTPVPDSVLERAKSENETYSILQTNNAMTAPGIGLSGIDNSSGTSTTDLTQ 237
Query: 219 VGEGRGKILTLKLDGISDSVTGLTVFDPSGYLTRMNDLKITTNSELRDILKARKIVRAVT 278
VG R +L LKL +SD+V+G T DP GYLT + +I +++E+ DI KAR + ++ T
Sbjct: 238 VGSARKTVLDLKLHQVSDNVSGKTCVDPKGYLTDLRSKRIASDAEVGDIKKARLLFKSAT 297
Query: 279 KNSPKKPLGWIQXXXXXXXXXXXXXXXKLITKGCNMCPKNEDVWLEACRLARPDEAKSVV 338
++PK WI K+I + C CP +E+VW+E L PD AK V+
Sbjct: 298 TSNPKHSPSWIAAAKLEVLAGKIVDARKIIAQACKECPTSEEVWIENANLQTPDNAKIVL 357
Query: 339 AKGVRQIPKSANKIRALRMALDEIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVEL 398
A+ VR IP S + L+ A +E + + R+L RA+E P V+L
Sbjct: 358 AQAVRVIPHSVK---------------IWLYAANLEKQLKMKKRVL-RRALEFIPTSVKL 401
Query: 399 WLALVRLETYGVARSVLNKARKKLPKERAIWIAAAKLEANGNTSMVGKIIERGIRALQGE 458
W V LE AR +L +A + +P +W+A A LE +++ + +AL
Sbjct: 402 WKEAVELEEPEDARILLGRAVECVPDNIDLWLALANLETYEKAR---EVLNKARQALPSS 458
Query: 459 EVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEI---GVDEEDKKRTWVADVEECKKRG 515
+ W+ A++ + G II I+ GV + W+A+ E+ +K
Sbjct: 459 SEI-----WISAAQLEESQGKNDNVNKIIKKAIKSLCSGVMNVMNRDKWIAEAEKSEKNQ 513
Query: 516 SIETARAIFSPACTVFLT---KKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLW 572
T +AI + + +K IW+ A+ S G ++ A+ ++ P + +W
Sbjct: 514 YYVTCQAIIYETIGMGIEDDDRKRIWVIDAEECLSRGSIKTANAIYAHILSIFPTKKSVW 573
Query: 573 LMGAKEKWLAGDVPATRDILQEAYAAIPNSEEI 605
L A+ + G L++A P E +
Sbjct: 574 LKVAQLEKQHGTKETLDQTLEKATQKCPQYENL 606
Score = 188 (71.2 bits), Expect = 6.4e-11, P = 6.4e-11
Identities = 77/311 (24%), Positives = 134/311 (43%)
Query: 306 KLITKGCNMCPKNEDVWLEACRLARPDEAKSVVAKGVRQIPKSANKIRALRMALDEIPDS 365
+++ + P + +W EA L P++A+ ++ + A++ +PD+
Sbjct: 386 RVLRRALEFIPTSVKLWKEAVELEEPEDARILLGR-----------------AVECVPDN 428
Query: 366 VRLWKALVEISSEEEARILLHRAVECCPLDVELWLALVRLETYGVARSVLNKARKKLPKE 425
+ LW AL + + E+AR +L++A + P E+W++ +LE +NK KK K
Sbjct: 429 IDLWLALANLETYEKAREVLNKARQALPSSSEIWISAAQLEESQGKNDNVNKIIKKAIKS 488
Query: 426 ----------RAIWIAAA-KLEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVA 474
R WIA A K E N II I G E + W+ +AE
Sbjct: 489 LCSGVMNVMNRDKWIAEAEKSEKNQYYVTCQAIIYETIG--MGIEDDDRKRIWVIDAEEC 546
Query: 475 DRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTK 534
GS+ T AI + + I KK W+ + K+ G+ ET A
Sbjct: 547 LSRGSIKTANAIYAHILSIF---PTKKSVWLKVAQLEKQHGTKETLDQTLEKATQKCPQY 603
Query: 535 KNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQE 594
+N+WL A+ + G +L +A + P +E +W+ K + ++ A R++L++
Sbjct: 604 ENLWLMYAKEKWISGDVAKAREILAQAFKFNPGSENIWVAAVKIESEMNELRAARNLLKK 663
Query: 595 AYAAIPNSEEI 605
A I +E I
Sbjct: 664 A-REIAGTERI 673
Score = 131 (51.2 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 57/285 (20%), Positives = 123/285 (43%)
Query: 306 KLITKGCNMCPKNEDVWLEACRLARPDEAKSVVAKGVRQIPKSANKIRALRMALDEIPDS 365
+++ K P + ++W+ A +L + K+ V +I K A I++L + + +
Sbjct: 446 EVLNKARQALPSSSEIWISAAQLEE-SQGKN---DNVNKIIKKA--IKSLCSGVMNVMNR 499
Query: 366 VRLWKALVEISSEEEARILLHRAV-ECCPLDVE------LWLA----LVRLETYGVARSV 414
+ W A E S + + + + E + +E +W+ + + A ++
Sbjct: 500 DK-WIAEAEKSEKNQYYVTCQAIIYETIGMGIEDDDRKRIWVIDAEECLSRGSIKTANAI 558
Query: 415 LNKARKKLPKERAIWIAAAKLEA-NGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEV 473
P ++++W+ A+LE +G + + +E+ + E + W+ A+
Sbjct: 559 YAHILSIFPTKKSVWLKVAQLEKQHGTKETLDQTLEKATQKCPQYE-----NLWLMYAKE 613
Query: 474 ADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLT 533
+G V I+ + E+ WVA V+ + + AR + A + T
Sbjct: 614 KWISGDVAKAREILAQAFKFNPGSEN---IWVAAVKIESEMNELRAARNLLKKAREIAGT 670
Query: 534 KKNIWLKAAQLEKSYGCRESL-IALLRKAVTYCPQAEVLWLMGAK 577
++ IW+K+A LE+ G + L ++L+ + + P + LWLM A+
Sbjct: 671 ER-IWMKSALLERELGGDQKLELSLIEQGLQKYPNSFKLWLMKAQ 714
>POMBASE|SPBC6B1.07 [details] [associations]
symbol:prp1 "U4/U6 x U5 tri-snRNP complex subunit Prp1"
species:4896 "Schizosaccharomyces pombe" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IDA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IMP] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=ISO] InterPro:IPR003107 InterPro:IPR010491
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
Pfam:PF06424 SMART:SM00028 SMART:SM00386 PomBase:SPBC6B1.07
EMBL:CU329671 GenomeReviews:CU329671_GR eggNOG:COG0457
Gene3D:1.25.40.10 GO:GO:0046540 GO:GO:0045292 EMBL:D83659
EMBL:D83743 PIR:T45158 RefSeq:NP_596086.1 ProteinModelPortal:Q12381
IntAct:Q12381 STRING:Q12381 EnsemblFungi:SPBC6B1.07.1
GeneID:2541185 KEGG:spo:SPBC6B1.07 HOGENOM:HOG000116247 KO:K12855
OMA:IWLRAAY OrthoDB:EOG4D82F8 NextBio:20802297 InterPro:IPR027108
PANTHER:PTHR11246:SF1 Uniprot:Q12381
Length = 906
Score = 791 (283.5 bits), Expect = 1.1e-78, P = 1.1e-78
Identities = 169/408 (41%), Positives = 241/408 (59%)
Query: 214 TDLTAVGEGRGKILTLKLDGISDSVTGLTVFDPSGYLTRMNDLKITTNSELRDILKARKI 273
T+ +G R K+L +KL S ++T + DP GYLT +N + ++L DI KARK+
Sbjct: 207 TNFVEIGAARDKVLGIKLAQASSNLTSPSTIDPKGYLTSLNSMVPKNANDLGDIRKARKL 266
Query: 274 VRAVTKNSPKKPLGWIQXXXXXXXXXXXXXXXKLITKGCNMCPKNEDVWLEACRLARPDE 333
+++V + +PK GW+ LI KGC C ++EDVWLEA RL E
Sbjct: 267 LQSVIETNPKHASGWVAAARLEEVANKLSQAQSLILKGCENCSRSEDVWLEAIRLHPAAE 326
Query: 334 AKSVVAKGVRQIPKS------ANKI--------RALRMALDEIPDSVRLWKALVEISSE- 378
AK ++A V+++PKS A K+ R ++ AL+ P SV LWK V + E
Sbjct: 327 AKVIIANAVKKLPKSVTLWLEAEKLENQAQHKKRIIKKALEFNPTSVSLWKEAVNLEEEV 386
Query: 379 EEARILLHRAVECCPLDVELWLALVRLETYGVARSVLNKARKKLPKERAIWIAAAKLEAN 438
+ ARILL RAVE P+ ++LWLAL RLETY A+ VLNKAR+ + +WIAAA+LE
Sbjct: 387 DNARILLARAVELIPMSIDLWLALARLETYENAKKVLNKARQTIRTSHEVWIAAARLEEQ 446
Query: 439 -GNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDE 497
GN S V KI+ RG+ LQ ++ RD W+ EAE + G+V+T AII + +G+DE
Sbjct: 447 QGNVSRVEKIMARGVSELQATGGMLQRDQWLSEAEKCETEGAVITAQAIINTCLGVGLDE 506
Query: 498 EDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIAL 557
ED+ TW+ D + R I+ ARA+F+ + V+ + +WL+A +LEK YG ES+ ++
Sbjct: 507 EDQFDTWLDDAQSFIARKCIDCARAVFAFSLRVYPKSEKLWLRAVELEKLYGTTESVCSI 566
Query: 558 LRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSEEI 605
L KAV CP+AE+LWL+ AKE+ D+ R+IL A+ NSEEI
Sbjct: 567 LEKAVESCPKAEILWLLYAKERKNVNDIAGARNILGRAFEYNSNSEEI 614
Score = 691 (248.3 bits), Expect = 4.4e-68, P = 4.4e-68
Identities = 185/604 (30%), Positives = 296/604 (49%)
Query: 11 DFLNSKPPANYIAGAGRGASSFTTRSDIGRTRTAPPSTIIGLPRPKPRXXXXXXXXXXXX 70
DFLN +PP NY+AG GRGA+ FTTRSD+G + P I +
Sbjct: 7 DFLNMQPPPNYVAGLGRGATGFTTRSDLGPAQELPSQESI---KAAIEQRKSEIEEEEDI 63
Query: 71 XXXYQQNFDHFEGNDAGLFVNLEYDDEDKEADAVWESIDKLMDSRRKSRREARLEEEIKN 130
YQ N+ LF YD ED+EAD +++S+++ + RRKS+RE + + + +
Sbjct: 64 DPRYQD-----PDNEVALFATAPYDHEDEEADKIYQSVEEHLSKRRKSQREKQEQLQKEK 118
Query: 131 YRYKNPTIREEFADLKGKLSTVKAKEWERIPEIGDYSR--RNKRKRFDSFVPVPDSLLQK 188
Y +NP + +FADLK LST+ ++W IPE GD +R R K+ R + F D +L
Sbjct: 119 YEKENPKVSSQFADLKRGLSTLTDEDWNNIPEPGDLTRKKRTKQPRRERFYATSDFVLAS 178
Query: 189 ARQEQQHV--IALDPSSRA-AGGAESVVTDLTAVGEGRGKILTLKLDGISDSVTGLTVFD 245
AR E Q + A+D + T+ +G R K+L +KL S ++T + D
Sbjct: 179 ARNENQAISNFAVDTQAGTETPDMNGTKTNFVEIGAARDKVLGIKLAQASSNLTSPSTID 238
Query: 246 PSGYLTRMNDLKITTNSELRDILKARKIVRAVTKNSPKKPLGWIQXXXXXXXXXXXXXXX 305
P GYLT +N + ++L DI KARK++++V + +PK GW+
Sbjct: 239 PKGYLTSLNSMVPKNANDLGDIRKARKLLQSVIETNPKHASGWVAAARLEEVANKLSQAQ 298
Query: 306 KLITKGCNMCPKNEDVWLEACRLARPDEAKSVVAKGVRQIPKSANKIRALRMALDEIPDS 365
LI KGC C ++EDVWLEA RL EAK ++A V+++PKS
Sbjct: 299 SLILKGCENCSRSEDVWLEAIRLHPAAEAKVIIANAVKKLPKS----------------- 341
Query: 366 VRLWKALVEISSE-EEARILLHRAVECCPLDVELWLALVRLET-YGVARSVLNKARKKLP 423
V LW ++ ++ + + ++ +A+E P V LW V LE AR +L +A + +P
Sbjct: 342 VTLWLEAEKLENQAQHKKRIIKKALEFNPTSVSLWKEAVNLEEEVDNARILLARAVELIP 401
Query: 424 KERAIWIAAAKLEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTC 483
+W+A A+LE N V + IR EV I ++ R ++
Sbjct: 402 MSIDLWLALARLETYENAKKVLNKARQTIRT--SHEVWIAAARLEEQQGNVSRVEKIMAR 459
Query: 484 -VAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKN---IWL 539
V+ + T G+ + D+ W+++ E+C+ G++ TA+AI + V L +++ WL
Sbjct: 460 GVSELQATG--GMLQRDQ---WLSEAEKCETEGAVITAQAIINTCLGVGLDEEDQFDTWL 514
Query: 540 KAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAI 599
AQ + C + A+ ++ P++E LWL + + L G + IL++A +
Sbjct: 515 DDAQSFIARKCIDCARAVFAFSLRVYPKSEKLWLRAVELEKLYGTTESVCSILEKAVESC 574
Query: 600 PNSE 603
P +E
Sbjct: 575 PKAE 578
Score = 168 (64.2 bits), Expect = 8.2e-09, P = 8.2e-09
Identities = 72/281 (25%), Positives = 117/281 (41%)
Query: 332 DEAKSVVAKGVRQIPKSANKIRAL-RMALDEIPDSVRLWKALVEIS----SEEEARILLH 386
D+A+S +A+ K + RA+ +L P S +LW VE+ + E +L
Sbjct: 515 DDAQSFIAR------KCIDCARAVFAFSLRVYPKSEKLWLRAVELEKLYGTTESVCSILE 568
Query: 387 RAVECCPLDVELWLALVR----LETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNT 441
+AVE CP LWL + + AR++L +A + IW+AA ++E N
Sbjct: 569 KAVESCPKAEILWLLYAKERKNVNDIAGARNILGRAFEYNSNSEEIWLAAVRIEFVNNEN 628
Query: 442 SMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKK 501
K++ R R G E + W K + + ++ N ++I DK
Sbjct: 629 ERARKLLARA-RIESGTERI-----WTKSISLERILDEKDRALQLLENALKI-YPHYDKL 681
Query: 502 RTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKA 561
+ E K++ IE AR + V +WL A+LE+ + + R
Sbjct: 682 YMMKGQIFEDKEQ--IELARDAYLAGTKVCPYSIPLWLLLAKLEEKQSVIRARVVFDRAK 739
Query: 562 VTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNS 602
V P+ E LWL K + AG++ R L +A P+S
Sbjct: 740 VKN-PKNEFLWLELIKMELRAGNISQVRAALAKALQECPSS 779
Score = 164 (62.8 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 79/345 (22%), Positives = 141/345 (40%)
Query: 264 LRDILKARKIVRAVTKNSPKKPLGWIQXXXXXXXXXXXXXXXKLITKGCNMCPKNEDVWL 323
L +A+ I+ K PK W++ ++I K P + +W
Sbjct: 321 LHPAAEAKVIIANAVKKLPKSVTLWLEAEKLENQAQHKK---RIIKKALEFNPTSVSLWK 377
Query: 324 EACRLARP-DEAKSVVAKGVRQIPKSANKIRALRMALDEIPDSVRLWKALVEISSEEEAR 382
EA L D A+ ++A+ V IP M++D LW AL + + E A+
Sbjct: 378 EAVNLEEEVDNARILLARAVELIP----------MSID-------LWLALARLETYENAK 420
Query: 383 ILLHRAVECCPLDVELWLALVRLETY--GVAR--SVLNKARKKLPK-----ERAIWIAAA 433
+L++A + E+W+A RLE V+R ++ + +L +R W++ A
Sbjct: 421 KVLNKARQTIRTSHEVWIAAARLEEQQGNVSRVEKIMARGVSELQATGGMLQRDQWLSEA 480
Query: 434 -KLEANGNTSMVGKIIERGIRALQGEEVVIDR-DTWMKEAEVADRAGSVVTCV-AIITNT 490
K E G II + EE D+ DTW+ +A+ + A + C A+ +
Sbjct: 481 EKCETEGAVITAQAIINTCLGVGLDEE---DQFDTWLDDAQ-SFIARKCIDCARAVFAFS 536
Query: 491 IEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGC 550
+ + E + W+ VE K G+ E+ +I A + +WL A+ K+
Sbjct: 537 LRVYPKSE---KLWLRAVELEKLYGTTESVCSILEKAVESCPKAEILWLLYAKERKNVND 593
Query: 551 RESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEA 595
+L +A Y +E +WL + +++ + R +L A
Sbjct: 594 IAGARNILGRAFEYNSNSEEIWLAAVRIEFVNNENERARKLLARA 638
Score = 135 (52.6 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 62/281 (22%), Positives = 115/281 (40%)
Query: 306 KLITKGCNMCPKNEDVWLEACRLARPDEAKSVVAKGVRQIPKSANKIRALRMALDEIPDS 365
K++ K + +VW+ A RL +E + V++ + + + ++++A L D
Sbjct: 421 KVLNKARQTIRTSHEVWIAAARL---EEQQGNVSRVEKIMARGVSELQATGGMLQR--DQ 475
Query: 366 VRLWKALVEISSEEEARILLHRAVECC---PLDVE----LWL----ALVRLETYGVARSV 414
W + E E A I + C LD E WL + + + AR+V
Sbjct: 476 ---WLSEAEKCETEGAVITAQAIINTCLGVGLDEEDQFDTWLDDAQSFIARKCIDCARAV 532
Query: 415 LNKARKKLPKERAIWIAAAKLEA-NGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEV 473
+ + PK +W+ A +LE G T V I+E+ + + E++ W+ A+
Sbjct: 533 FAFSLRVYPKSEKLWLRAVELEKLYGTTESVCSILEKAVESCPKAEIL-----WLLYAKE 587
Query: 474 ADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLT 533
+ I+ E + E+ W+A V E AR + + A T
Sbjct: 588 RKNVNDIAGARNILGRAFEYNSNSEE---IWLAAVRIEFVNNENERARKLLARARIESGT 644
Query: 534 KKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLM 574
++ IW K+ LE+ ++ + LL A+ P + L++M
Sbjct: 645 ER-IWTKSISLERILDEKDRALQLLENALKIYPHYDKLYMM 684
>WB|WBGene00013343 [details] [associations]
symbol:prp-6 species:6239 "Caenorhabditis elegans"
[GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040015 "negative regulation of
multicellular organism growth" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040039 "inductive cell migration" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0018996 "molting cycle, collagen and cuticulin-based cuticle"
evidence=IMP] InterPro:IPR003107 InterPro:IPR010491
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
Pfam:PF06424 PROSITE:PS50005 PROSITE:PS50293 SMART:SM00028
SMART:SM00386 GO:GO:0005634 GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0018996
GO:GO:0000003 eggNOG:COG0457 Gene3D:1.25.40.10 GO:GO:0040039
GO:GO:0040015 InterPro:IPR013105 Pfam:PF07719 GO:GO:0000398
EMBL:AL132898 HOGENOM:HOG000116247 KO:K12855 OMA:IWLRAAY
InterPro:IPR027108 PANTHER:PTHR11246:SF1
GeneTree:ENSGT00550000075016 RefSeq:NP_507525.1
ProteinModelPortal:Q9GRZ2 SMR:Q9GRZ2 STRING:Q9GRZ2 PaxDb:Q9GRZ2
EnsemblMetazoa:Y59A8B.6.1 EnsemblMetazoa:Y59A8B.6.2 GeneID:180180
KEGG:cel:CELE_Y59A8B.6 UCSC:Y59A8B.6.1 CTD:180180 WormBase:Y59A8B.6
InParanoid:Q9GRZ2 NextBio:908332 Uniprot:Q9GRZ2
Length = 968
Score = 760 (272.6 bits), Expect = 2.1e-75, P = 2.1e-75
Identities = 160/397 (40%), Positives = 230/397 (57%)
Query: 215 DLTAVGEGRGKILTLKLDGISDSVTGLTVFDPSGYLTRMNDLKITTNSELRDILKARKIV 274
DL +G+ R KI+ ++L +SDSVTG TV DP GYLT M + +L+DI KAR ++
Sbjct: 265 DLVKIGQARNKIMDMQLTQVSDSVTGQTVVDPKGYLTDMQSIIPQMGGDLQDIKKARMLL 324
Query: 275 RAVTKNSPKKPLGWIQXXXXXXXXXXXXXXXKLITKGCNMCPKNEDVWLEACRLARPDEA 334
++V + +P+ P W+ I +GC +E++WL A RL P+
Sbjct: 325 KSVRETNPRHPPAWVASAVLEEQAGKLQTARNFIMEGCEKIKNSEELWLHAIRLHPPELG 384
Query: 335 KSVVAKGVRQIPKSA--------------NKIRALRMALDEIPDSVRLWKALVEISSEEE 380
+S+VA VR P S +K + LR AL++IP SV+LWKA VE+ E+
Sbjct: 385 RSIVANAVRSCPHSVRLWCKASDLEQDLKDKKKVLRKALEQIPSSVKLWKAAVELEDPED 444
Query: 381 ARILLHRAVECCPLDVELWLALVRLETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANG 439
ARILL RAVECC E+WLAL RLETY AR VLNKAR+ +P +R IW++AA+LE G
Sbjct: 445 ARILLTRAVECCSSSTEMWLALARLETYENARKVLNKAREHIPTDRHIWLSAARLEETRG 504
Query: 440 NTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEED 499
MV KI+ + + +L+ +V I+RD W+K+A A+ A +TC AII N I +GV++ED
Sbjct: 505 QKDMVDKIVAKAMSSLKVNQVEINRDQWLKDAVDAEMAKCPITCQAIIRNVIGLGVEDED 564
Query: 500 KKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLR 559
K+ TW+AD E +K + R +++ A F K++IW A E+ +G + A+L
Sbjct: 565 KRTTWLADAENFEKEEAFTCVRTVYAIALKEFSRKRSIWDAAIHFEREHGSLDEHEAILL 624
Query: 560 KAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAY 596
KA P+ E WLM AK +++ V RD L A+
Sbjct: 625 KACETVPEVEDYWLMLAKLRFVNKRVGEARDTLMSAF 661
Score = 375 (137.1 bits), Expect = 1.2e-31, P = 1.2e-31
Identities = 122/449 (27%), Positives = 193/449 (42%)
Query: 4 LGSKGRLDFLNSKPPANYIAGAGRGASSFTTRSDIGRTRTAPPSTIIGLPRPKPRXXXXX 63
L +K + F+ P Y+ G GRGA+ FTTRSDIG R G P P+
Sbjct: 9 LVNKTKKFFMGMPAPTGYVPGVGRGATGFTTRSDIGPARDPTELPEAGPVGPSPQGASSS 68
Query: 64 XXXXXXXXXX--------YQQNFDHFEGNDAGLFVNLEYDDEDKEADAVWESIDKLMDSR 115
+ N+D F G LF YD ED++AD ++ +D +D R
Sbjct: 69 SAPPAKRARDDDGDGEDLNEANYDEFSGYSGSLFSKDPYDQEDEDADRIYNEVDDRLDER 128
Query: 116 RKSRREARLEEEIKNYRYKNPTIREEFADLKGKLSTVKAKEWERIPEIGDYSRRNKRK-R 174
K RRE + +E ++ + P I++ F DLK +L+ V EW+ IPE+GD + KR R
Sbjct: 129 HKERREKKYKELVELFHKDRPKIQQGFQDLKRQLAEVTEDEWQAIPEVGDMRNKAKRNAR 188
Query: 175 FDSFVPVPDSLLQKARQEQQHVIALDPSSRAAGGAESVVTDLTAVGEGRGKILTLKLDGI 234
+ F PVPDS++ Q ++D + S ++ +G G G GI
Sbjct: 189 AEKFTPVPDSIIAMNMNYGQMSHSIDSGNGLTTPFASGF--MSTLGGGGGAAAAGAKSGI 246
Query: 235 SDSVTGLTVFDPS-GYLTRMNDLKI-TTNSELRDILKARKIVRAVTKNSPKKPLGWIQXX 292
G PS G T ++ +KI +++ D ++ ++ +VT + P G++
Sbjct: 247 M--TPGWKSDIPSSGTSTDLDLVKIGQARNKIMD-MQLTQVSDSVTGQTVVDPKGYLTDM 303
Query: 293 XXXXXXXXXXXXXKLITKGCNMCPKNEDVWLEACRLARPDEAKSVVAKGVRQIPKSANKI 352
G K + L++ R P + VA V + + A K+
Sbjct: 304 QSIIPQMG----------GDLQDIKKARMLLKSVRETNPRHPPAWVASAV--LEEQAGKL 351
Query: 353 RALRMAL----DEIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALVRLET- 407
+ R + ++I +S LW + + E R ++ AV CP V LW LE
Sbjct: 352 QTARNFIMEGCEKIKNSEELWLHAIRLHPPELGRSIVANAVRSCPHSVRLWCKASDLEQD 411
Query: 408 YGVARSVLNKARKKLPKERAIWIAAAKLE 436
+ VL KA +++P +W AA +LE
Sbjct: 412 LKDKKKVLRKALEQIPSSVKLWKAAVELE 440
>ASPGD|ASPL0000068414 [details] [associations]
symbol:AN7447 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0045292 "mRNA cis splicing,
via spliceosome" evidence=IEA] InterPro:IPR003107
InterPro:IPR010491 InterPro:IPR011990 InterPro:IPR013026
InterPro:IPR019734 Pfam:PF06424 PROSITE:PS50005 PROSITE:PS50293
SMART:SM00028 SMART:SM00386 GO:GO:0005634 eggNOG:COG0457
Gene3D:1.25.40.10 EMBL:AACD01000129 EMBL:BN001304 GO:GO:0000398
HOGENOM:HOG000116247 KO:K12855 OMA:IWLRAAY OrthoDB:EOG4D82F8
InterPro:IPR027108 PANTHER:PTHR11246:SF1 RefSeq:XP_680716.1
ProteinModelPortal:Q5AW83 STRING:Q5AW83
EnsemblFungi:CADANIAT00000537 GeneID:2869476 KEGG:ani:AN7447.2
Uniprot:Q5AW83
Length = 941
Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
Identities = 195/636 (30%), Positives = 307/636 (48%)
Query: 6 SKGRLDFLNSKPPANYIAGAGRGASSFTTRSDIGRTRTAP-PSTI-IGLPR--------P 55
+ GR DFL+ P NY+AG GRGA+ FTTRSD+G R P P I L + P
Sbjct: 2 ASGRKDFLSQPAPENYVAGLGRGATGFTTRSDLGPAREGPTPEQIQAALAKRAQLLGAAP 61
Query: 56 KPRXXXXXXXXXXXXXXXYQQNFDHFEG--NDAGLFVNLEYDDEDKEADAVWESIDKLMD 113
+++ + F+ N+ GLF ++D ED EAD ++ +D+ MD
Sbjct: 62 PTAYGATREKGKGEEKPAEEEDDERFQDPDNEVGLFAYGQFDQEDDEADRIYREVDEKMD 121
Query: 114 SRRKSRREARLEEEIKNYRYKNPTIREEFADLKGKLSTVKAKEWERIPEIGDYSRRNKRK 173
RRK+RREAR +E + Y KNP I+++F DLK L++V EW +PE+GD + RN+R
Sbjct: 122 RRRKARREARERQEREEYERKNPKIQQQFVDLKRSLASVSEDEWANLPEVGDLTGRNRRT 181
Query: 174 RFD-----SFVPVPDSLLQKARQEQQH--VIALDPSSRAAG--GAESVVTDLTAVGEGRG 224
+ + F VPDS+L AR Q +A D ++ AG GA+ ++T+ + R
Sbjct: 182 KQNLRMQQRFYAVPDSVLASARDSSQFDTTVADDGTATDAGANGADGMITNFANISAARD 241
Query: 225 KILTLKLD----GIS-DSVTG-LTVFDPSGYLTRMNDLKITTNS-ELRDILKARKIVRAV 277
K+L +KLD G S D+ +G T DP GYLT + ++ E+ D+ + R ++ +V
Sbjct: 242 KVLQVKLDQAAMGSSGDAASGSATSIDPKGYLTSLTQSELKAGEIEVGDVKRVRVLLESV 301
Query: 278 TKNSPKKPLGWIQXXXXXXXXXXXXXXXKLITKGCNMCPKNEDVWLEACRLARPDEAKSV 337
T+ +PK GWI +I KGC +CPK+ED WLE RL AK +
Sbjct: 302 TRTNPKHAPGWIALARLEELAGRIVTARNVIAKGCELCPKSEDAWLENIRLNEGHNAKVI 361
Query: 338 VAKGVRQIPKSANKIRALRMALDEIPDSVRLWKALVEISSEEEARI-LLHRAVECCPLDV 396
A ++ N D S RLW + + +E A+ +L +A+ P V
Sbjct: 362 AANAIKN-----N---------DH---STRLWIEAMRLETEPRAKKNVLRQAILHIPQSV 404
Query: 397 ELWLALVRLETYGV-ARSVLNKARKKLPKERAIWIAAAKLEANGNTSMVGKIIERGIRAL 455
+W V LE AR +L KA + +P +W+A A+LE N K++ +A
Sbjct: 405 TIWKEAVNLEEDPADARLLLAKAVELIPLSVELWLALARLETPENAQ---KVLNAARKA- 460
Query: 456 QGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEED--KKRTWVADVEECKK 513
V + W+ + + ++ G+ V ++ ++ E K+ W+A+ E+C++
Sbjct: 461 ----VPTSHEIWIAASRLQEQMGTF-NKVNVMKRAVQSLARENAMLKREEWIAEAEKCEE 515
Query: 514 RGSIETARAIFSPACTVFLT----KKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAE 569
G++ T AI L +K+IW+ A+ S G E+ A+ A+
Sbjct: 516 EGAVLTCGAIIRETLGWGLDEDDDRKDIWMDDAKASISRGKYETARAIYAYALRVFVNRR 575
Query: 570 VLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSEEI 605
+W+ A + G A +L++A A P SEE+
Sbjct: 576 SIWVAAADLERNHGTKEALWQVLEKAVEACPQSEEL 611
Score = 699 (251.1 bits), Expect = 6.3e-69, P = 6.3e-69
Identities = 151/391 (38%), Positives = 221/391 (56%)
Query: 232 DGISDSVTGLTVFDPSGYLTRMNDLKITTNS-ELRDILKARKIVRAVTKNSPKKPLGWIQ 290
D S S T + DP GYLT + ++ E+ D+ + R ++ +VT+ +PK GWI
Sbjct: 258 DAASGSATSI---DPKGYLTSLTQSELKAGEIEVGDVKRVRVLLESVTRTNPKHAPGWIA 314
Query: 291 XXXXXXXXXXXXXXXKLITKGCNMCPKNEDVWLEACRLARPDEAKSVVAKGVRQIPKSAN 350
+I KGC +CPK+ED WLE RL AK + A ++ S
Sbjct: 315 LARLEELAGRIVTARNVIAKGCELCPKSEDAWLENIRLNEGHNAKVIAANAIKNNDHSTR 374
Query: 351 --------------KIRALRMALDEIPDSVRLWKALVEISSEE-EARILLHRAVECCPLD 395
K LR A+ IP SV +WK V + + +AR+LL +AVE PL
Sbjct: 375 LWIEAMRLETEPRAKKNVLRQAILHIPQSVTIWKEAVNLEEDPADARLLLAKAVELIPLS 434
Query: 396 VELWLALVRLETYGVARSVLNKARKKLPKERAIWIAAAKLEANGNTSMVGKIIERGIRAL 455
VELWLAL RLET A+ VLN ARK +P IWIAA++L+ T +++R +++L
Sbjct: 435 VELWLALARLETPENAQKVLNAARKAVPTSHEIWIAASRLQEQMGTFNKVNVMKRAVQSL 494
Query: 456 QGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEED-KKRTWVADVEECKKR 514
E ++ R+ W+ EAE + G+V+TC AII T+ G+DE+D +K W+ D + R
Sbjct: 495 ARENAMLKREEWIAEAEKCEEEGAVLTCGAIIRETLGWGLDEDDDRKDIWMDDAKASISR 554
Query: 515 GSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLM 574
G ETARAI++ A VF+ +++IW+ AA LE+++G +E+L +L KAV CPQ+E LWL
Sbjct: 555 GKYETARAIYAYALRVFVNRRSIWVAAADLERNHGTKEALWQVLEKAVEACPQSEELWLQ 614
Query: 575 GAKEKWLAGDVPATRDILQEAYAAIPNSEEI 605
AKEKW +G++ R +L A+ PN+E+I
Sbjct: 615 LAKEKWQSGEIDDARRVLGRAFNQNPNNEDI 645
Score = 192 (72.6 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 67/279 (24%), Positives = 123/279 (44%)
Query: 332 DEAKSVVAKGVRQIPKSANKIRALRMALDEIPDSVRLWKALVEIS----SEEEARILLHR 387
D+AK+ +++G + +A I A AL + +W A ++ ++E +L +
Sbjct: 546 DDAKASISRGKYE---TARAIYAY--ALRVFVNRRSIWVAAADLERNHGTKEALWQVLEK 600
Query: 388 AVECCPLDVELWLALVRLETYGV----ARSVLNKARKKLPKERAIWIAAAKLEANGNTSM 443
AVE CP ELWL L + + AR VL +A + P IW+AA KLEA+ +
Sbjct: 601 AVEACPQSEELWLQLAKEKWQSGEIDDARRVLGRAFNQNPNNEDIWLAAVKLEADAQQTD 660
Query: 444 VGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRT 503
R + A E DR W+K + G+V + ++ +++ + DK
Sbjct: 661 QA----RELLATARREAGTDR-VWIKSVAFERQLGNVDDALDLVNQGLQL-YPKADK--L 712
Query: 504 WVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVT 563
W+ + + + + AR + +WL A++LE+ G ++L +A
Sbjct: 713 WMMKGQIYESQNKLPQAREAYGTGTRACPKSVALWLLASRLEEKAGAVVRARSVLDRARL 772
Query: 564 YCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNS 602
P + LW + + A ++P + ++ A +P+S
Sbjct: 773 AVPNSPELWTESVRVERRANNIPQAKVLMARALQEVPSS 811
Score = 166 (63.5 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 60/261 (22%), Positives = 105/261 (40%)
Query: 355 LRMALDEIPDSVRLW----KALVEISSEEEARILLHRAVECCPLDVELWLALVRLE-TYG 409
L LDE D +W KA + E AR + A+ +W+A LE +G
Sbjct: 530 LGWGLDEDDDRKDIWMDDAKASISRGKYETARAIYAYALRVFVNRRSIWVAAADLERNHG 589
Query: 410 VARS---VLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRD 465
+ VL KA + P+ +W+ AK + +G +++ R E D
Sbjct: 590 TKEALWQVLEKAVEACPQSEELWLQLAKEKWQSGEIDDARRVLGRAFNQNPNNE-----D 644
Query: 466 TWMKEAEV-ADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIF 524
W+ ++ AD + + T E G D R W+ V ++ G+++ A +
Sbjct: 645 IWLAAVKLEADAQQTDQARELLATARREAGTD-----RVWIKSVAFERQLGNVDDALDLV 699
Query: 525 SPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGD 584
+ ++ +W+ Q+ +S CP++ LWL+ ++ + AG
Sbjct: 700 NQGLQLYPKADKLWMMKGQIYESQNKLPQAREAYGTGTRACPKSVALWLLASRLEEKAGA 759
Query: 585 VPATRDILQEAYAAIPNSEEI 605
V R +L A A+PNS E+
Sbjct: 760 VVRARSVLDRARLAVPNSPEL 780
Score = 126 (49.4 bits), Expect = 0.00031, P = 0.00031
Identities = 50/230 (21%), Positives = 96/230 (41%)
Query: 353 RALRMALDEIPDSVRLWKALVEI---SSE-EEARILLHRAVECCPLDVELWLALVRLETY 408
+ L A++ P S LW L + S E ++AR +L RA P + ++WLA V+LE
Sbjct: 596 QVLEKAVEACPQSEELWLQLAKEKWQSGEIDDARRVLGRAFNQNPNNEDIWLAAVKLEAD 655
Query: 409 GV----ARSVLNKARKKLPKERAIWIAAAKLEAN-GNTSMVGKIIERGIRALQGEEVVID 463
AR +L AR++ +R +WI + E GN ++ +G++ + +
Sbjct: 656 AQQTDQARELLATARREAGTDR-VWIKSVAFERQLGNVDDALDLVNQGLQLYPKADKL-- 712
Query: 464 RDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKK-RTWVADVEECKKRGSIETARA 522
WM + ++ + + G K W+ +K G++ AR+
Sbjct: 713 ---WMMKGQIYESQNKLPQA----REAYGTGTRACPKSVALWLLASRLEEKAGAVVRARS 765
Query: 523 IFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLW 572
+ A +W ++ ++E+ L+ +A+ P + +LW
Sbjct: 766 VLDRARLAVPNSPELWTESVRVERRANNIPQAKVLMARALQEVPSSGLLW 815
>SGD|S000000259 [details] [associations]
symbol:PRP6 "Splicing factor" species:4932 "Saccharomyces
cerevisiae" [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA;IPI]
[GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR003107 InterPro:IPR010491
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
Pfam:PF06424 SMART:SM00028 SMART:SM00386 SGD:S000000259
EMBL:BK006936 eggNOG:COG0457 Gene3D:1.25.40.10 GO:GO:0000398
GO:GO:0046540 EMBL:Z46260 KO:K12855 OrthoDB:EOG4D82F8
InterPro:IPR027108 PANTHER:PTHR11246:SF1
GeneTree:ENSGT00550000075016 EMBL:X53465 EMBL:Z35924 PIR:S12319
RefSeq:NP_009611.1 ProteinModelPortal:P19735 SMR:P19735
DIP:DIP-1290N IntAct:P19735 MINT:MINT-392841 STRING:P19735
PaxDb:P19735 PeptideAtlas:P19735 EnsemblFungi:YBR055C GeneID:852344
KEGG:sce:YBR055C CYGD:YBR055c HOGENOM:HOG000246836 OMA:PQGWIAS
NextBio:971082 Genevestigator:P19735 GermOnline:YBR055C
Uniprot:P19735
Length = 899
Score = 267 (99.0 bits), Expect = 9.3e-39, Sum P(3) = 9.3e-39
Identities = 86/311 (27%), Positives = 136/311 (43%)
Query: 95 DDEDKEADAVWESIDKLMDSRRKSRREARLEEEIKNYRYKNPTIREEFADLKGKLSTVKA 154
DDED EA V+++++ + ++K R E++ N + ++ +FADLK L+ V
Sbjct: 61 DDEDDEAANVFKTLELKLAQKKKKRAN---EKDDDN-SVDSSNVKRQFADLKESLAAVTE 116
Query: 155 KEWERIPEIGDYSRRNKRKRFDSFV-----PVPDSLLQKARQEQQHVIALDPSSRAAGGA 209
EW IP+ D++RRNKR R + PDSL+ + + +
Sbjct: 117 SEWMDIPDATDFTRRNKRNRIQEQLNRKTYAAPDSLIPG--NVDLNKLTEEREKLLQSQI 174
Query: 210 ESVVTDLTAVGEGRGKILTLKLDGISDSVTGLTVFDPSGYLTRMNDLKITTNSELRDILK 269
+ + LT I K + +D+++ L + R+N L T L D+ K
Sbjct: 175 DENLAQLTK--NASNPIQVNKPNAATDALSYLKDLEND----RVNSLSDAT---LEDLQK 225
Query: 270 ARKIVRAVTKNSPKKPLGWIQXXXXXXXXXXXXXXXKLITKGCNMCPKNEDVWLEACRLA 329
R I+++ K P P GWI K+I GC CP++ D+WLE RL
Sbjct: 226 MRTILKSYRKADPTNPQGWIASARLEEKARKFSVAKKIIENGCQECPRSSDIWLENIRLH 285
Query: 330 RPDE--AKSVVAKGVRQIPKS--------------ANKIRALRMALDEIPDSVRLWKALV 373
D K++VA + P S NK R +R AL EIP LWK V
Sbjct: 286 ESDVHYCKTLVATAINFNPTSPLLWFKAIDLESTTVNKYRVVRKALQEIPRDEGLWKLAV 345
Query: 374 EISSEEEARIL 384
+++ A+++
Sbjct: 346 SFEADK-AQVI 355
Score = 192 (72.6 bits), Expect = 9.3e-39, Sum P(3) = 9.3e-39
Identities = 60/220 (27%), Positives = 100/220 (45%)
Query: 348 SANKIRALRMALDEIPDSVRLWKALVEISSEEEARI-LLHRAVECCPLDVELWLALVRLE 406
+ NK R +R AL EIP LWK V +++ I +L +A + P ++L A L+
Sbjct: 320 TVNKYRVVRKALQEIPRDEGLWKLAVSFEADKAQVIKMLEKATQFIPQSMDLLTAYTNLQ 379
Query: 407 TYGVARSVLNKARKKLPKERAIWIAAAKLEANGNTSM-VGKII---ERGIRALQGEEVVI 462
+Y A+ LN RK LP+E IWI + LE N + V K++ + G+ L
Sbjct: 380 SYHNAKMTLNSFRKILPQEPEIWIISTLLEERNNPDIPVDKLVSLLKEGLLELSKNGYKA 439
Query: 463 DRDTWMKEAEVA-DRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEEC-KKRGSIETA 520
W+K AE D S +TC AI+ +E + E + + + +V++ +K +
Sbjct: 440 TLSAWLKRAEALNDAPNSNLTCQAIVYAILE-WLRESGEYESELNNVDQILEKMPHSKVQ 498
Query: 521 RAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRK 560
A+ +W + +SY E L+A ++
Sbjct: 499 IAVLKKLIQWDPCDTVLWSRLKMATESYHKIEELLAFFQE 538
Score = 94 (38.1 bits), Expect = 1.4e-28, Sum P(3) = 1.4e-28
Identities = 28/111 (25%), Positives = 54/111 (48%)
Query: 362 IPDSVRLWKAL-----VEISSEEEARILLHRAVECCPLDVELWLALVRLE----TYGVAR 412
+P+ LW +L +++ + AR +L R + P DV ++A +++E A
Sbjct: 698 VPNCPLLWVSLSKIDEIDLKNPVRARSILDRGLLKNPDDVLFYIAKIQMEIRLGNLDQAE 757
Query: 413 SVLNKARKKLPKERAIWIAAAKLEANGNTSMVGK-IIERGIRALQGEEVVI 462
++ +A +K P +W+ KL +GN S + K I + +R Q + V+
Sbjct: 758 LLVTQALQKFPSNALLWVEQIKLFKHGNKSSLKKTIFQDALRRTQNDHRVL 808
Score = 82 (33.9 bits), Expect = 9.3e-39, Sum P(3) = 9.3e-39
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 9 RLDFLNSKPPANYIAGAGRGASSFTTR 35
R FL+ +PPA Y+ G GRGA+ F+T+
Sbjct: 3 RPSFLDQEPPAGYVPGIGRGATGFSTK 29
Score = 44 (20.5 bits), Expect = 2.0e-23, Sum P(3) = 2.0e-23
Identities = 11/51 (21%), Positives = 28/51 (54%)
Query: 504 WVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESL 554
++A ++ + G+++ A + + A F + +W++ +L K +G + SL
Sbjct: 740 YIAKIQMEIRLGNLDQAELLVTQALQKFPSNALLWVEQIKLFK-HGNKSSL 789
Score = 42 (19.8 bits), Expect = 3.2e-23, Sum P(3) = 3.2e-23
Identities = 16/53 (30%), Positives = 24/53 (45%)
Query: 555 IALLRKAVTYCPQAEVLW--LMGAKEKWLAGDVPATRDILQEAYAAIPNSEEI 605
IA+L+K + + P VLW L A E + + QE NS++I
Sbjct: 499 IAVLKKLIQWDPCDTVLWSRLKMATESY--HKIEELLAFFQELLFQTKNSDDI 549
Score = 38 (18.4 bits), Expect = 0.00066, Sum P(3) = 0.00066
Identities = 10/41 (24%), Positives = 21/41 (51%)
Query: 249 YLTRMNDLKITTNSELRDILKARKIVRAVTKNSPKKPLGWI 289
++ + DL +T + L+ A+ + + K P++P WI
Sbjct: 364 FIPQSMDL-LTAYTNLQSYHNAKMTLNSFRKILPQEPEIWI 403
>CGD|CAL0001343 [details] [associations]
symbol:orf19.6356 species:5476 "Candida albicans" [GO:0003674
"molecular_function" evidence=ND] [GO:0046540 "U4/U6 x U5 tri-snRNP
complex" evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR003107 InterPro:IPR010491
InterPro:IPR011990 Pfam:PF06424 SMART:SM00386 CGD:CAL0001343
GO:GO:0005634 eggNOG:COG0457 Gene3D:1.25.40.10 GO:GO:0000398
EMBL:AACQ01000192 EMBL:AACQ01000189 KO:K12855 InterPro:IPR027108
PANTHER:PTHR11246:SF1 RefSeq:XP_711574.1 RefSeq:XP_711643.1
ProteinModelPortal:Q59PD7 STRING:Q59PD7 GeneID:3646751
GeneID:3646834 KEGG:cal:CaO19.13713 KEGG:cal:CaO19.6356
Uniprot:Q59PD7
Length = 911
Score = 362 (132.5 bits), Expect = 8.1e-33, Sum P(2) = 8.1e-33
Identities = 113/441 (25%), Positives = 200/441 (45%)
Query: 9 RLDFLNSKPPANYIAGAGRGASSFTTRSDIGRTRTAPPSTIIGLPRPKPRXXXXXXXXXX 68
R FL+ + P Y+AG+ RGA F RT T+P S G+ +
Sbjct: 3 RKSFLDQEAPEGYVAGSARGAVGF-------RTSTSPDSFNRGIAIVQNEEEEEDEDNNN 55
Query: 69 XXXXXYQQNFDHFEGNDAGLFVNLEYDDEDKEADAVWESIDKLMDSRRKSRREARLEEEI 128
+N G + D++D+EAD ++ I+K + S+++ + +
Sbjct: 56 KTTTQLNEN-GILSTKKRG-----KEDEDDEEADRIYNEIEKKLQSKKRKSPNNKNDRAK 109
Query: 129 KNYRYKNPTIREEFADLKGKLSTVKAKEWERIPEIGDYSRRNKRKRFDSFVPVPDSLLQK 188
N +F+DLK +L+ + +W +PE GD +R+NKR R LL++
Sbjct: 110 PTVTTTNDNSSTQFSDLKRQLANLTEDDWLNLPEPGDMTRKNKRTR----------LLEQ 159
Query: 189 ARQEQQHVI-ALDPSSRAAGGAESVVTDLTAVGEGRGKILTLKLDGISDS---VTGLTVF 244
+Q L +S +A G + T+ ++ E R K+L +LD + + G ++
Sbjct: 160 QQQRMYSAPDTLISTSSSATGTNT--TNFKSLSESRDKLLGSQLDNLLPAYVKTNGQSIN 217
Query: 245 DPSGYLTRMND--LKIT---TNSELRDILKARKIVRAVTKNSPKKPLGWIQXXXXXXXXX 299
+ S + L +T +S+ ++ K R I+ ++ K+ P KP WI
Sbjct: 218 NSSSVSEELQQSILNMTGVEQDSKYANLQKNRVILSSLRKSEPYKPSSWISSARLEEQDG 277
Query: 300 XXXXXXK-LITKGCNMCPKNEDVWLEACRLARPDE--AKSVVAKGVRQIPKSA------- 349
K I +GC CP+N+++WLE RL + D K ++ + PKS
Sbjct: 278 KNLKLAKQYILEGCKKCPRNDEIWLENIRLNQSDIKLCKQLITNALNYNPKSEKLWLKAT 337
Query: 350 -------NKIRALRMALDEIPDSVRLWKALVEISSEEE-ARILLHRAVECCPLDVELWLA 401
NK + L L++IP++ +LW+ L+E+ ++ + LL +AV+ C + E W A
Sbjct: 338 DLETNNINKRKVLMKGLEKIPNNDQLWEKLIELENDPNMVKKLLLKAVQLCSQNWEFWSA 397
Query: 402 LVRLETYGVARSVLNKARKKL 422
L+ + Y ++ +LN+ARK +
Sbjct: 398 LLNISNYEESKKILNQARKSI 418
Score = 284 (105.0 bits), Expect = 6.1e-21, Sum P(2) = 6.1e-21
Identities = 107/420 (25%), Positives = 194/420 (46%)
Query: 198 ALDPSSRAAGGAESVVTDLTAVGEGRGKILTLKLDG-ISDSVTGLTVFDPSGYLTRMNDL 256
+++ SS + + + ++T V E K L+ + I S+ + PS +++ L
Sbjct: 215 SINNSSSVSEELQQSILNMTGV-EQDSKYANLQKNRVILSSLRKSEPYKPSSWISSAR-L 272
Query: 257 KITTNSELRDILKARKIVRAVTKNSPKKPLGWIQXXXXXXXXXXXXXXXKLITKGCNMCP 316
+ L+ A++ + K P+ W++ +LIT N P
Sbjct: 273 EEQDGKNLK---LAKQYILEGCKKCPRNDEIWLENIRLNQSDIKLCK--QLITNALNYNP 327
Query: 317 KNEDVWLEACRLARPDEAKSVVAKGVRQIPKSANKIRALRMALDEIPDSVRLWKALVEIS 376
K+E +WL+A L E ++ NK + L L++IP++ +LW+ L+E+
Sbjct: 328 KSEKLWLKATDL----ETNNI------------NKRKVLMKGLEKIPNNDQLWEKLIELE 371
Query: 377 SEEE-ARILLHRAVECCPLDVELWLALVRLETYGVARSVLNKARKKLPKERAI---WIAA 432
++ + LL +AV+ C + E W AL+ + Y ++ +LN+ARK + + I WI A
Sbjct: 372 NDPNMVKKLLLKAVQLCSQNWEFWSALLNISNYEESKKILNQARKSIKGVKNILKVWITA 431
Query: 433 AKLEAN--GNTSM-VGKIIERGIRALQGEEVV-IDRDTWMKEAEVADRAGSVVTCVAIIT 488
+LE G ++ + K+I+ +A++ + + +D W K A ++R VT AII
Sbjct: 432 CQLEEREYGEETIDINKLIKLMDKAMKEISIYQMTKDDWYKLACDSERENFKVTTKAIII 491
Query: 489 NTIEI-GVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKS 547
+ ++ G+D+ + DV++ G I A++I T N W K + K
Sbjct: 492 SYLKFKGLDQS----SIFEDVDKFFNDGYIIVAKSILDYIVTNSSNDINKWKKVFSVIKK 547
Query: 548 YGCRESLI-ALLRKAVTYCPQAEVLWLMGAKEKW-LAGDVPATRDILQEAYAAIPNSEEI 605
+ L+ + KA++ PQ + +LM AK+KW L+ D+P R IL A P I
Sbjct: 548 FNQELPLLFSYYDKAISLNPQVPLFYLMYAKDKWQLSKDIPQARSILNSGELANPTDLSI 607
Score = 69 (29.3 bits), Expect = 8.1e-33, Sum P(2) = 8.1e-33
Identities = 28/102 (27%), Positives = 39/102 (38%)
Query: 504 WVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVT 563
W+ + +K I AR+I A IW+ Q EK G SL L KA+
Sbjct: 712 WIKLSQIDEKAQIIIRARSILDQAILQNPNNPEIWVYKIQFEKRIGNLSSLQNLTNKALK 771
Query: 564 YCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSEEI 605
P LW++ L + + I +A A NS I
Sbjct: 772 QFPTDPWLWIINLS---LIPKMSQRKTIFLDALKATNNSNLI 810
Score = 64 (27.6 bits), Expect = 2.7e-32, Sum P(2) = 2.7e-32
Identities = 26/90 (28%), Positives = 43/90 (47%)
Query: 517 IETARAIFSPAC-TVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMG 575
I+ A +F P C ++L I +LE++ RE+ + ++K CPQ LW+
Sbjct: 664 IQKALKLF-PNCWKLYLQNIQILEDIDELEQA---RENALVGVKK----CPQCIYLWIKL 715
Query: 576 AKEKWLAGDVPATRDILQEAYAAIPNSEEI 605
++ A + R IL +A PN+ EI
Sbjct: 716 SQIDEKAQIIIRARSILDQAILQNPNNPEI 745
Score = 62 (26.9 bits), Expect = 4.4e-32, Sum P(2) = 4.4e-32
Identities = 39/200 (19%), Positives = 86/200 (43%)
Query: 411 ARSVLNKARKKLPKERAIWIAAAKLEA-NGNTSMVGKIIERGI--RALQGEEVVIDRDTW 467
ARS+LN P + +I A KLE GN K I+ I + ++ E+ W
Sbjct: 590 ARSILNSGELANPTDLSIKFAIIKLELITGNLLNAEKYIKHIIDTKPMESEKF------W 643
Query: 468 MKEAEVADRAGSVVTCVA-IITNTIEIGVDEEDKKRTWVADVEECKKRGSIETAR--AIF 524
K + S +T + +I +++ + + ++ +++ + +E AR A+
Sbjct: 644 YKYIHILRCLNSDITVLKDVIQKALKLF---PNCWKLYLQNIQILEDIDELEQARENALV 700
Query: 525 S----PACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKW 580
P C ++L W+K +Q+++ ++L +A+ P +W+ + +
Sbjct: 701 GVKKCPQC-IYL-----WIKLSQIDEKAQIIIRARSILDQAILQNPNNPEIWVYKIQFEK 754
Query: 581 LAGDVPATRDILQEAYAAIP 600
G++ + +++ +A P
Sbjct: 755 RIGNLSSLQNLTNKALKQFP 774
Score = 42 (19.8 bits), Expect = 5.4e-30, Sum P(2) = 5.4e-30
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 581 LAGDVPATRDILQEAYAAIPN 601
L D+ +D++Q+A PN
Sbjct: 653 LNSDITVLKDVIQKALKLFPN 673
>UNIPROTKB|Q59PD7 [details] [associations]
symbol:PRP6 "Putative uncharacterized protein PRP6"
species:237561 "Candida albicans SC5314" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR003107
InterPro:IPR010491 InterPro:IPR011990 Pfam:PF06424 SMART:SM00386
CGD:CAL0001343 GO:GO:0005634 eggNOG:COG0457 Gene3D:1.25.40.10
GO:GO:0000398 EMBL:AACQ01000192 EMBL:AACQ01000189 KO:K12855
InterPro:IPR027108 PANTHER:PTHR11246:SF1 RefSeq:XP_711574.1
RefSeq:XP_711643.1 ProteinModelPortal:Q59PD7 STRING:Q59PD7
GeneID:3646751 GeneID:3646834 KEGG:cal:CaO19.13713
KEGG:cal:CaO19.6356 Uniprot:Q59PD7
Length = 911
Score = 362 (132.5 bits), Expect = 8.1e-33, Sum P(2) = 8.1e-33
Identities = 113/441 (25%), Positives = 200/441 (45%)
Query: 9 RLDFLNSKPPANYIAGAGRGASSFTTRSDIGRTRTAPPSTIIGLPRPKPRXXXXXXXXXX 68
R FL+ + P Y+AG+ RGA F RT T+P S G+ +
Sbjct: 3 RKSFLDQEAPEGYVAGSARGAVGF-------RTSTSPDSFNRGIAIVQNEEEEEDEDNNN 55
Query: 69 XXXXXYQQNFDHFEGNDAGLFVNLEYDDEDKEADAVWESIDKLMDSRRKSRREARLEEEI 128
+N G + D++D+EAD ++ I+K + S+++ + +
Sbjct: 56 KTTTQLNEN-GILSTKKRG-----KEDEDDEEADRIYNEIEKKLQSKKRKSPNNKNDRAK 109
Query: 129 KNYRYKNPTIREEFADLKGKLSTVKAKEWERIPEIGDYSRRNKRKRFDSFVPVPDSLLQK 188
N +F+DLK +L+ + +W +PE GD +R+NKR R LL++
Sbjct: 110 PTVTTTNDNSSTQFSDLKRQLANLTEDDWLNLPEPGDMTRKNKRTR----------LLEQ 159
Query: 189 ARQEQQHVI-ALDPSSRAAGGAESVVTDLTAVGEGRGKILTLKLDGISDS---VTGLTVF 244
+Q L +S +A G + T+ ++ E R K+L +LD + + G ++
Sbjct: 160 QQQRMYSAPDTLISTSSSATGTNT--TNFKSLSESRDKLLGSQLDNLLPAYVKTNGQSIN 217
Query: 245 DPSGYLTRMND--LKIT---TNSELRDILKARKIVRAVTKNSPKKPLGWIQXXXXXXXXX 299
+ S + L +T +S+ ++ K R I+ ++ K+ P KP WI
Sbjct: 218 NSSSVSEELQQSILNMTGVEQDSKYANLQKNRVILSSLRKSEPYKPSSWISSARLEEQDG 277
Query: 300 XXXXXXK-LITKGCNMCPKNEDVWLEACRLARPDE--AKSVVAKGVRQIPKSA------- 349
K I +GC CP+N+++WLE RL + D K ++ + PKS
Sbjct: 278 KNLKLAKQYILEGCKKCPRNDEIWLENIRLNQSDIKLCKQLITNALNYNPKSEKLWLKAT 337
Query: 350 -------NKIRALRMALDEIPDSVRLWKALVEISSEEE-ARILLHRAVECCPLDVELWLA 401
NK + L L++IP++ +LW+ L+E+ ++ + LL +AV+ C + E W A
Sbjct: 338 DLETNNINKRKVLMKGLEKIPNNDQLWEKLIELENDPNMVKKLLLKAVQLCSQNWEFWSA 397
Query: 402 LVRLETYGVARSVLNKARKKL 422
L+ + Y ++ +LN+ARK +
Sbjct: 398 LLNISNYEESKKILNQARKSI 418
Score = 284 (105.0 bits), Expect = 6.1e-21, Sum P(2) = 6.1e-21
Identities = 107/420 (25%), Positives = 194/420 (46%)
Query: 198 ALDPSSRAAGGAESVVTDLTAVGEGRGKILTLKLDG-ISDSVTGLTVFDPSGYLTRMNDL 256
+++ SS + + + ++T V E K L+ + I S+ + PS +++ L
Sbjct: 215 SINNSSSVSEELQQSILNMTGV-EQDSKYANLQKNRVILSSLRKSEPYKPSSWISSAR-L 272
Query: 257 KITTNSELRDILKARKIVRAVTKNSPKKPLGWIQXXXXXXXXXXXXXXXKLITKGCNMCP 316
+ L+ A++ + K P+ W++ +LIT N P
Sbjct: 273 EEQDGKNLK---LAKQYILEGCKKCPRNDEIWLENIRLNQSDIKLCK--QLITNALNYNP 327
Query: 317 KNEDVWLEACRLARPDEAKSVVAKGVRQIPKSANKIRALRMALDEIPDSVRLWKALVEIS 376
K+E +WL+A L E ++ NK + L L++IP++ +LW+ L+E+
Sbjct: 328 KSEKLWLKATDL----ETNNI------------NKRKVLMKGLEKIPNNDQLWEKLIELE 371
Query: 377 SEEE-ARILLHRAVECCPLDVELWLALVRLETYGVARSVLNKARKKLPKERAI---WIAA 432
++ + LL +AV+ C + E W AL+ + Y ++ +LN+ARK + + I WI A
Sbjct: 372 NDPNMVKKLLLKAVQLCSQNWEFWSALLNISNYEESKKILNQARKSIKGVKNILKVWITA 431
Query: 433 AKLEAN--GNTSM-VGKIIERGIRALQGEEVV-IDRDTWMKEAEVADRAGSVVTCVAIIT 488
+LE G ++ + K+I+ +A++ + + +D W K A ++R VT AII
Sbjct: 432 CQLEEREYGEETIDINKLIKLMDKAMKEISIYQMTKDDWYKLACDSERENFKVTTKAIII 491
Query: 489 NTIEI-GVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKS 547
+ ++ G+D+ + DV++ G I A++I T N W K + K
Sbjct: 492 SYLKFKGLDQS----SIFEDVDKFFNDGYIIVAKSILDYIVTNSSNDINKWKKVFSVIKK 547
Query: 548 YGCRESLI-ALLRKAVTYCPQAEVLWLMGAKEKW-LAGDVPATRDILQEAYAAIPNSEEI 605
+ L+ + KA++ PQ + +LM AK+KW L+ D+P R IL A P I
Sbjct: 548 FNQELPLLFSYYDKAISLNPQVPLFYLMYAKDKWQLSKDIPQARSILNSGELANPTDLSI 607
Score = 69 (29.3 bits), Expect = 8.1e-33, Sum P(2) = 8.1e-33
Identities = 28/102 (27%), Positives = 39/102 (38%)
Query: 504 WVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVT 563
W+ + +K I AR+I A IW+ Q EK G SL L KA+
Sbjct: 712 WIKLSQIDEKAQIIIRARSILDQAILQNPNNPEIWVYKIQFEKRIGNLSSLQNLTNKALK 771
Query: 564 YCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSEEI 605
P LW++ L + + I +A A NS I
Sbjct: 772 QFPTDPWLWIINLS---LIPKMSQRKTIFLDALKATNNSNLI 810
Score = 64 (27.6 bits), Expect = 2.7e-32, Sum P(2) = 2.7e-32
Identities = 26/90 (28%), Positives = 43/90 (47%)
Query: 517 IETARAIFSPAC-TVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMG 575
I+ A +F P C ++L I +LE++ RE+ + ++K CPQ LW+
Sbjct: 664 IQKALKLF-PNCWKLYLQNIQILEDIDELEQA---RENALVGVKK----CPQCIYLWIKL 715
Query: 576 AKEKWLAGDVPATRDILQEAYAAIPNSEEI 605
++ A + R IL +A PN+ EI
Sbjct: 716 SQIDEKAQIIIRARSILDQAILQNPNNPEI 745
Score = 62 (26.9 bits), Expect = 4.4e-32, Sum P(2) = 4.4e-32
Identities = 39/200 (19%), Positives = 86/200 (43%)
Query: 411 ARSVLNKARKKLPKERAIWIAAAKLEA-NGNTSMVGKIIERGI--RALQGEEVVIDRDTW 467
ARS+LN P + +I A KLE GN K I+ I + ++ E+ W
Sbjct: 590 ARSILNSGELANPTDLSIKFAIIKLELITGNLLNAEKYIKHIIDTKPMESEKF------W 643
Query: 468 MKEAEVADRAGSVVTCVA-IITNTIEIGVDEEDKKRTWVADVEECKKRGSIETAR--AIF 524
K + S +T + +I +++ + + ++ +++ + +E AR A+
Sbjct: 644 YKYIHILRCLNSDITVLKDVIQKALKLF---PNCWKLYLQNIQILEDIDELEQARENALV 700
Query: 525 S----PACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKW 580
P C ++L W+K +Q+++ ++L +A+ P +W+ + +
Sbjct: 701 GVKKCPQC-IYL-----WIKLSQIDEKAQIIIRARSILDQAILQNPNNPEIWVYKIQFEK 754
Query: 581 LAGDVPATRDILQEAYAAIP 600
G++ + +++ +A P
Sbjct: 755 RIGNLSSLQNLTNKALKQFP 774
Score = 42 (19.8 bits), Expect = 5.4e-30, Sum P(2) = 5.4e-30
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 581 LAGDVPATRDILQEAYAAIPN 601
L D+ +D++Q+A PN
Sbjct: 653 LNSDITVLKDVIQKALKLFPN 673
>TAIR|locus:2121214 [details] [associations]
symbol:BGAL14 "beta-galactosidase 14" species:3702
"Arabidopsis thaliana" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds"
evidence=IEA] [GO:0004565 "beta-galactosidase activity"
evidence=ISS] [GO:0005576 "extracellular region" evidence=ISM]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005975 "carbohydrate
metabolic process" evidence=IEA] [GO:0030246 "carbohydrate binding"
evidence=IEA] [GO:0043169 "cation binding" evidence=IEA]
InterPro:IPR000922 InterPro:IPR001944 InterPro:IPR010491
InterPro:IPR013781 InterPro:IPR019801 Pfam:PF01301 Pfam:PF02140
Pfam:PF06424 PRINTS:PR00742 PROSITE:PS01182 PROSITE:PS50228
GO:GO:0005634 EMBL:CP002687 GO:GO:0043169 Gene3D:3.20.20.80
InterPro:IPR017853 SUPFAM:SSF51445 GO:GO:0005975 GO:GO:0030246
InterPro:IPR008979 SUPFAM:SSF49785 GO:GO:0000398 GO:GO:0004565
PANTHER:PTHR23421 IPI:IPI00938708 RefSeq:NP_001154292.1
UniGene:At.70242 ProteinModelPortal:F4JUE3 SMR:F4JUE3 PRIDE:F4JUE3
EnsemblPlants:AT4G38590.2 GeneID:830016 KEGG:ath:AT4G38590
OMA:WINGNSI ArrayExpress:F4JUE3 Uniprot:F4JUE3
Length = 1052
Score = 317 (116.6 bits), Expect = 1.7e-31, Sum P(2) = 1.7e-31
Identities = 57/92 (61%), Positives = 72/92 (78%)
Query: 78 FDHFEGNDAGLFVNLEYDDEDKEADAVWESIDKLMDSRRKSRREARLEEEIKNYRYKNPT 137
FD FEG+DAGLF N E DD+DKEADA+W++ID+ MDSRRK RREA+L++EI+NYR NP
Sbjct: 959 FDDFEGHDAGLFANAESDDQDKEADAIWDAIDRRMDSRRKDRREAKLKQEIENYRASNPK 1018
Query: 138 IREEFADLKGKLSTVKAKEWERIPEIGDYSRR 169
+ +F DL KL T+ EW+ IPEIG+YS R
Sbjct: 1019 VSGQFVDLTRKLHTLSEDEWDSIPEIGNYSHR 1050
Score = 109 (43.4 bits), Expect = 1.7e-31, Sum P(2) = 1.7e-31
Identities = 20/29 (68%), Positives = 23/29 (79%)
Query: 14 NSKPPANYIAGAGRGASSFTTRSDIGRTR 42
N PP+NY+AG GRGA+ FTTRSDIG R
Sbjct: 918 NLMPPSNYVAGLGRGAAGFTTRSDIGPAR 946
>ASPGD|ASPL0000053069 [details] [associations]
symbol:AN1259 species:162425 "Emericella nidulans"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 SMART:SM00386 GO:GO:0008380
EMBL:BN001308 GO:GO:0006397 GO:GO:0005681 EMBL:AACD01000017
GO:GO:0007049 Gene3D:1.25.40.10 eggNOG:NOG327505 KO:K12869
RefSeq:XP_658863.1 STRING:Q5BDX1 GeneID:2877035 KEGG:ani:AN1259.2
HOGENOM:HOG000207972 OMA:KFTFAKI OrthoDB:EOG4NKG44 Uniprot:Q5BDX1
Length = 673
Score = 153 (58.9 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 81/280 (28%), Positives = 116/280 (41%)
Query: 347 KSANKIRAL-RMALDEIPDSVRLWKALVEISSEEE----ARILLHRAVECCPLDVELWLA 401
K + R++ ALD SV LW +E AR LL RAV P +LW
Sbjct: 86 KEFRRARSIFERALDVDSTSVPLWIRYIESEMRNRNINHARNLLDRAVTILPRVDKLWYK 145
Query: 402 LVRLE-TYGV---ARSVLNKARKKLPKERAIWIAAAKLEANGNTSMVGKIIERGIRALQG 457
V +E T G R V + P E A W A KLE N ER RA+
Sbjct: 146 YVYMEETLGNIPGTRQVFERWMSWEPDEGA-WSAYIKLEKRYNE------FERA-RAIFQ 197
Query: 458 EEVVIDRD--TWMKEAEVADRAGSVVTCVAIITNTIE-IGVDEEDKKRTWVADVEECKKR 514
++ + W+K A + G+ + +E +G D D+K ++A K
Sbjct: 198 RFTIVHPEPRNWIKWARFEEEYGTSDLVREVYGLAVETLGEDFMDEK-LFIAYARFETKL 256
Query: 515 GSIETARAIFSPACTVFLTKKNIWLKAAQ--LEKSYGCRESL--IALLRKAVTYCPQAEV 570
E ARAI+ A K+I L A EK +G RE + + L ++ V Y Q +
Sbjct: 257 KEYERARAIYKYALDRLPRSKSITLHKAYTTFEKQFGDREGVENVILAKRRVQYEEQLKE 316
Query: 571 ------LWLMGAKEKWLAGDVPATRDILQEAYAAIPNSEE 604
+W A+ + +GD RD+ + A A IP S+E
Sbjct: 317 NLRNYDVWFDFARLEEQSGDPERVRDVYERAIAQIPPSQE 356
>UNIPROTKB|F1S842 [details] [associations]
symbol:LOC100157027 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 PROSITE:PS50293 SMART:SM00386 GO:GO:0005634
GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
GeneTree:ENSGT00390000012228 Ensembl:ENSSSCT00000011594
ArrayExpress:F1S842 Uniprot:F1S842
Length = 1859
Score = 144 (55.7 bits), Expect = 7.7e-06, P = 7.7e-06
Identities = 58/224 (25%), Positives = 100/224 (44%)
Query: 353 RALR-MALDEIPDSVRLWKALVEIS----SEEEARILLHRAVECC-PLDVELWLALV--R 404
RAL+ ++ E + + +W AL+ + S+E + RAV+ PL V L LA + +
Sbjct: 1632 RALKTISFREEQEKLNVWVALLNLENMYGSQESLTKVFERAVQYNEPLKVFLHLADIYTK 1691
Query: 405 LETYGVARSVLNKARKKLPKERAIWIA-AAKLEANGNTSMVGKIIERGIRALQGEEVVID 463
E + A + N+ K+ +E+A+WI A L G ++++R + L +E V
Sbjct: 1692 SEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRGQAGASHRVMQRALECLPKKEHV-- 1749
Query: 464 RDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAI 523
D K A++ + G AI NT+ D W ++ K GS + R I
Sbjct: 1750 -DVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTD---VWSVYIDMIIKHGSQKEVRDI 1805
Query: 524 FSPACTVFLTKKNI---WLKAAQLEKSYGCRESLIALLRKAVTY 564
F + L K + + + EK +G + + A+ KA+ Y
Sbjct: 1806 FERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEY 1849
>UNIPROTKB|F1S843 [details] [associations]
symbol:LOC100157027 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 PROSITE:PS50293 SMART:SM00386 GO:GO:0005634
GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
OMA:LHLADIY GeneTree:ENSGT00390000012228 Ensembl:ENSSSCT00000011593
ArrayExpress:F1S843 Uniprot:F1S843
Length = 1876
Score = 144 (55.7 bits), Expect = 7.8e-06, P = 7.8e-06
Identities = 58/224 (25%), Positives = 100/224 (44%)
Query: 353 RALR-MALDEIPDSVRLWKALVEIS----SEEEARILLHRAVECC-PLDVELWLALV--R 404
RAL+ ++ E + + +W AL+ + S+E + RAV+ PL V L LA + +
Sbjct: 1649 RALKTISFREEQEKLNVWVALLNLENMYGSQESLTKVFERAVQYNEPLKVFLHLADIYTK 1708
Query: 405 LETYGVARSVLNKARKKLPKERAIWIA-AAKLEANGNTSMVGKIIERGIRALQGEEVVID 463
E + A + N+ K+ +E+A+WI A L G ++++R + L +E V
Sbjct: 1709 SEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRGQAGASHRVMQRALECLPKKEHV-- 1766
Query: 464 RDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAI 523
D K A++ + G AI NT+ D W ++ K GS + R I
Sbjct: 1767 -DVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTD---VWSVYIDMIIKHGSQKEVRDI 1822
Query: 524 FSPACTVFLTKKNI---WLKAAQLEKSYGCRESLIALLRKAVTY 564
F + L K + + + EK +G + + A+ KA+ Y
Sbjct: 1823 FERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEY 1866
>UNIPROTKB|A7MB10 [details] [associations]
symbol:PDCD11 "Protein RRP5 homolog" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 SMART:SM00386 GO:GO:0005730 GO:GO:0006397
GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006364 InterPro:IPR022967
SMART:SM00316 EMBL:BC151277 IPI:IPI00867038 RefSeq:NP_001095573.1
UniGene:Bt.23141 ProteinModelPortal:A7MB10 SMR:A7MB10 PRIDE:A7MB10
GeneID:526867 KEGG:bta:526867 CTD:22984 eggNOG:COG0539
HOGENOM:HOG000088607 HOVERGEN:HBG108419 KO:K14792 NextBio:20874464
Uniprot:A7MB10
Length = 1874
Score = 152 (58.6 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 59/224 (26%), Positives = 103/224 (45%)
Query: 353 RALR-MALDEIPDSVRLWKALVEIS----SEEEARILLHRAVECC-PLDVELWLALV--R 404
RAL+ ++ E + + +W AL+ + S+E + RAV+ PL V L LA + +
Sbjct: 1647 RALKTISFREEQEKLNVWVALLNLENMYGSQESLTKVFERAVQYNEPLKVFLHLADIYTK 1706
Query: 405 LETYGVARSVLNKARKKLPKERAIWIA-AAKLEANGNTSMVGKIIERGIRALQGEEVVID 463
E + A + N+ K+ +E+A+W+ A L G ++++R + L +E V
Sbjct: 1707 SEKFQEAGELYNRMLKRFRQEKAVWVKYGAFLLRRGKAEASHRVMQRALECLPKKEHV-- 1764
Query: 464 RDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAI 523
D K A++ + G AI +T+ I D W ++ K GS + ARAI
Sbjct: 1765 -DVIAKFAQLEFQLGDAERARAIFESTLSIYPKRTD---VWSVYIDMIIKHGSQKEARAI 1820
Query: 524 FSPACTVFLTKKNI---WLKAAQLEKSYGCRESLIALLRKAVTY 564
F + L K + + + EK +G + + A+ KA+ Y
Sbjct: 1821 FERVIHLSLAPKRMKFFFKRYLDYEKQHGSEKDVQAVKAKALEY 1864
Score = 40 (19.1 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 178 FVPVPDSLLQKARQEQQHVIALDPSSRAAGGAESVVTDLTAVGEGRGK 225
+VP P+S+ + + V+ +PS + +++D GEG+ +
Sbjct: 578 YVPDPESVFYTGQVVKVVVLNCEPSKERMLLSFRLLSDPKQEGEGQSQ 625
Score = 38 (18.4 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 116 RKSRREARLEEEIKNYRYKNPTIREE 141
++ E+ E+EI N + K + EE
Sbjct: 1473 KRPHPESSSEQEIGNKKQKKAALSEE 1498
>UNIPROTKB|G5E5C4 [details] [associations]
symbol:PDCD11 "Protein RRP5 homolog" species:9913 "Bos
taurus" [GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR003029
InterPro:IPR003107 InterPro:IPR008847 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126
PROSITE:PS50293 SMART:SM00386 GO:GO:0005829 GO:GO:0005634
GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
UniGene:Bt.23141 OMA:LHLADIY GeneTree:ENSGT00390000012228
EMBL:DAAA02059036 EMBL:DAAA02059037 Ensembl:ENSBTAT00000012818
Uniprot:G5E5C4
Length = 1874
Score = 152 (58.6 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 59/224 (26%), Positives = 103/224 (45%)
Query: 353 RALR-MALDEIPDSVRLWKALVEIS----SEEEARILLHRAVECC-PLDVELWLALV--R 404
RAL+ ++ E + + +W AL+ + S+E + RAV+ PL V L LA + +
Sbjct: 1647 RALKTISFREEQEKLNVWVALLNLENMYGSQESLTKVFERAVQYNEPLKVFLHLADIYTK 1706
Query: 405 LETYGVARSVLNKARKKLPKERAIWIA-AAKLEANGNTSMVGKIIERGIRALQGEEVVID 463
E + A + N+ K+ +E+A+W+ A L G ++++R + L +E V
Sbjct: 1707 SEKFQEAGELYNRMLKRFRQEKAVWVKYGAFLLRRGKAEASHRVMQRALECLPKKEHV-- 1764
Query: 464 RDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAI 523
D K A++ + G AI +T+ I D W ++ K GS + ARAI
Sbjct: 1765 -DVIAKFAQLEFQLGDAERARAIFESTLSIYPKRTD---VWSVYIDMIIKHGSQKEARAI 1820
Query: 524 FSPACTVFLTKKNI---WLKAAQLEKSYGCRESLIALLRKAVTY 564
F + L K + + + EK +G + + A+ KA+ Y
Sbjct: 1821 FERVIHLSLAPKRMKFFFKRYLDYEKQHGSEKDVQAVKAKALEY 1864
Score = 40 (19.1 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 178 FVPVPDSLLQKARQEQQHVIALDPSSRAAGGAESVVTDLTAVGEGRGK 225
+VP P+S+ + + V+ +PS + +++D GEG+ +
Sbjct: 578 YVPDPESVFYTGQVVKVVVLNCEPSKERMLLSFRLLSDPKQEGEGQSQ 625
Score = 38 (18.4 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 116 RKSRREARLEEEIKNYRYKNPTIREE 141
++ E+ E+EI N + K + EE
Sbjct: 1473 KRPHPESSSEQEIGNKKQKKAALSEE 1498
>MGI|MGI:1341788 [details] [associations]
symbol:Pdcd11 "programmed cell death 11" species:10090 "Mus
musculus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0008134
"transcription factor binding" evidence=ISO] [GO:0043123 "positive
regulation of I-kappaB kinase/NF-kappaB cascade" evidence=TAS]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 SMART:SM00386 MGI:MGI:1341788 GO:GO:0005829
GO:GO:0006915 GO:GO:0005730 GO:GO:0006355 GO:GO:0043123
GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006364 InterPro:IPR022967
SMART:SM00316 CTD:22984 eggNOG:COG0539 HOVERGEN:HBG108419 KO:K14792
OMA:LHLADIY OrthoDB:EOG4XKV63 EMBL:AK129080 EMBL:BC038503
EMBL:BC055276 EMBL:BC070468 EMBL:AK003899 EMBL:AK141450
EMBL:AK147950 EMBL:AK161803 EMBL:AF055668 EMBL:AF055669
IPI:IPI00551454 RefSeq:NP_035183.2 UniGene:Mm.41166 HSSP:Q14690
ProteinModelPortal:Q6NS46 SMR:Q6NS46 STRING:Q6NS46
PhosphoSite:Q6NS46 PaxDb:Q6NS46 PRIDE:Q6NS46 DNASU:18572
Ensembl:ENSMUST00000072141 GeneID:18572 KEGG:mmu:18572
UCSC:uc008hup.1 GeneTree:ENSGT00390000012228 InParanoid:Q9CTD8
NextBio:294412 Bgee:Q6NS46 Genevestigator:Q6NS46 Uniprot:Q6NS46
Length = 1862
Score = 148 (57.2 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 58/224 (25%), Positives = 100/224 (44%)
Query: 353 RALR-MALDEIPDSVRLWKALVEIS----SEEEARILLHRAVECC-PLDVELWLALV--R 404
RAL+ ++ E + + +W AL+ + S+E + RAV+ PL V L LA + +
Sbjct: 1635 RALKTISFREEQEKLNVWVALLNLENMYGSQESLTKVFERAVQYNEPLKVFLHLADIYTK 1694
Query: 405 LETYGVARSVLNKARKKLPKERAIWIA-AAKLEANGNTSMVGKIIERGIRALQGEEVVID 463
E Y A + N+ K+ +E+A+WI A + ++++R + L +E V
Sbjct: 1695 SEKYKEAGELYNRMLKRFRQEKAVWIKYGAFVLGRSQAGASHRVLQRALECLPAKEHV-- 1752
Query: 464 RDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAI 523
D +K A++ + G V AI NT+ D W ++ K GS R I
Sbjct: 1753 -DVIVKFAQLEFQLGDVERAKAIFENTLSTYPKRTD---VWSVYIDMTIKHGSQTAVRDI 1808
Query: 524 FSPACTVFLTKKNI---WLKAAQLEKSYGCRESLIALLRKAVTY 564
F + L K + + + EK +G + + A+ KA+ Y
Sbjct: 1809 FERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEY 1852
Score = 42 (19.8 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 116 RKSRREARLEEEIKNYRYKNPTIREE 141
++ R+E+ E+E+ N R K EE
Sbjct: 1462 KRERQESESEQELVNKRPKKSGAAEE 1487
Score = 41 (19.5 bits), Expect = 0.00018, Sum P(3) = 0.00018
Identities = 15/34 (44%), Positives = 17/34 (50%)
Query: 222 GRGKILTLKLDGISDSVTGL--TVFDPSGYLTRM 253
G+G LTLK VTGL V P+ TRM
Sbjct: 973 GQGVCLTLKTT--EPGVTGLILAVEGPASKRTRM 1004
Score = 38 (18.4 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 1 MVMLGSKGRLDFLNSKPPANYIAGAGRGA 29
+V +G G FL+ K YI +GA
Sbjct: 203 LVDIGVGGTRAFLSLKKAQEYIRQKNKGA 231
Score = 37 (18.1 bits), Expect = 0.00044, Sum P(3) = 0.00044
Identities = 34/166 (20%), Positives = 63/166 (37%)
Query: 87 GLFVNLEYDDEDKEADAVWESIDKLMDSRRKSRREARLEEEIKNYRYKNPTIREEFADLK 146
G F N K+ + + L DS++ EA R + + +E A L
Sbjct: 375 GFFKNAGAIFRLKDGVLAYARVSHLSDSKKAFNAEAFKPGSTHKCRIIDYSQMDELALLS 434
Query: 147 GKLSTVKAK--EWERIPEIGDYSRRNKR--KRFDSFVPVPDSLLQKARQEQQH---VIAL 199
+ S + A + I +IG + K F V V + + K H ++
Sbjct: 435 LRKSIIAAPFLRYHDI-KIGTVVKGTVLAIKPFGILVKVGEQI--KGLVPSMHLADIMMK 491
Query: 200 DPSSRAAGGAESVVTDLTAVGEGRGKILTLKLDGISDSVTGLTVFD 245
+P + + G E L E + I+TLK ++ ++ +T ++
Sbjct: 492 NPEKKYSPGDEVKCRVLLCDPEAKKLIMTLKKTLVTSKLSLITCYE 537
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.133 0.388 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 605 575 0.00080 120 3 11 22 0.42 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 24
No. of states in DFA: 624 (66 KB)
Total size of DFA: 321 KB (2161 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 53.23u 0.16s 53.39t Elapsed: 00:00:02
Total cpu time: 53.25u 0.16s 53.41t Elapsed: 00:00:02
Start: Tue May 21 02:40:54 2013 End: Tue May 21 02:40:56 2013