BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007407
(605 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A1A5S1|PRP6_RAT Pre-mRNA-processing factor 6 OS=Rattus norvegicus GN=Prpf6 PE=2
SV=1
Length = 941
Score = 536 bits (1381), Expect = e-151, Method: Compositional matrix adjust.
Identities = 302/643 (46%), Positives = 402/643 (62%), Gaps = 43/643 (6%)
Query: 6 SKGRLDFLNSKPPANYIAGAGRGASSFTTRSDIGRTRTA-PPSTIIGLPRPKPRDDDGED 64
+K + FL P Y+ G GRGA+ FTTRSDIG R A P P K D
Sbjct: 2 NKKKKPFLGMPAPLGYVPGLGRGATGFTTRSDIGPARDANDPVDDRHAPPGKRTVGDQMK 61
Query: 65 DND---DDGNNGYQQNFDHFEGNDAGLFVNLEYDDEDKEADAVWESIDKLMDSRRKSRRE 121
N DD + N+D F G LF + Y+ +D+EADA++ ++DK MD RRK RRE
Sbjct: 62 KNQAADDDDEDLNDTNYDEFNGYAGSLFSSGPYEKDDEEADAIYAALDKRMDERRKERRE 121
Query: 122 ARLEEEIKNYRYKNPTIREEFADLKGKLSTVKAKEWERIPEIGDY-SRRNKRKRFDSFVP 180
R +EEI+ YR + P I+++F+DLK KL+ V +EW IPE+GD ++R + R++ P
Sbjct: 122 QREKEEIEKYRMERPKIQQQFSDLKRKLAEVTEEEWLSIPEVGDARNKRQRNPRYEKLTP 181
Query: 181 VPDSLLQKARQEQQHVIALDPSSRAAGGAESVVT-----------------------DLT 217
VPDS K Q ++ ++DP GG + D+
Sbjct: 182 VPDSFFAKHLQTGENHTSVDPRQTQFGGLNTPYPGGLNTPYPGGMTPGLMTPGTGELDMR 241
Query: 218 AVGEGRGKILTLKLDGISDSVTGLTVFDPSGYLTRMNDLKITTNSELRDILKARKIVRAV 277
+G+ R ++ ++L +SDSV+G TV DP GYLT +N + T ++ DI KAR ++++V
Sbjct: 242 KIGQARNTLMDMRLSQVSDSVSGQTVVDPKGYLTDLNSMIPTHGGDINDIKKARLLLKSV 301
Query: 278 TKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLARPDEAKSV 337
+ +P P WI +ARLEE+ + AR LI KG MCPK+EDVWLEA RL D AK+V
Sbjct: 302 RETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWLEAARLQPGDTAKAV 361
Query: 338 VAKGVRQIPKSAN--------------KIRALRMALDEIPDSVRLWKALVEISSEEEARI 383
VA+ VR +P+S K R LR AL+ +P+SVRLWKA VE+ E+ARI
Sbjct: 362 VAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELEEPEDARI 421
Query: 384 LLHRAVECCPLDVELWLALVRLETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTS 442
+L RAVECCP VELWLAL RLETY AR VLNKAR+ +P +R IWI AAKLE ANGNT
Sbjct: 422 MLSRAVECCPTSVELWLALARLETYENARKVLNKARENIPTDRHIWITAAKLEEANGNTQ 481
Query: 443 MVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKR 502
MV KII+R I +L+ V I+R+ W+++AE DRAGSV TC A++ I IG++EED+K
Sbjct: 482 MVEKIIDRAITSLRANGVEINREQWIQDAEECDRAGSVATCQAVMRAVIGIGIEEEDRKH 541
Query: 503 TWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAV 562
TW+ D + C ++E ARAI++ A VF +KK++WL+AA EK++G RESL ALL++AV
Sbjct: 542 TWMEDADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAV 601
Query: 563 TYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSEEI 605
+CP+AEVLWLMGAK KWLAGDVPA R IL A+ A PNSEEI
Sbjct: 602 AHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEI 644
Score = 64.3 bits (155), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 101/225 (44%), Gaps = 31/225 (13%)
Query: 240 GLTVFDPSGYLTRMNDLKITTNSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELAN 299
L VF PS + N R+ L+A +++ + PK + W+ A+ + LA
Sbjct: 566 ALQVF-PSKKSVWLRAAYFEKNHGTRESLEA--LLQRAVAHCPKAEVLWLMGAKSKWLAG 622
Query: 300 EEAAARKLITKGCNMCPKNEDVWLEACRLARPDE----AKSVVAKGVRQIPKSANKIRAL 355
+ AAR ++ P +E++WL A +L + A+ ++AK P + ++++
Sbjct: 623 DVPAARSILALAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARSSAPTARVFMKSV 682
Query: 356 RM----------------ALDEIPDSVRLW--KALVEISSE--EEARILLHRAVECCPLD 395
++ AL D +LW K +E E E AR ++ ++ CP
Sbjct: 683 KLEWVLGNITAAQELCEEALRHYEDFPKLWMMKGQIEEQGELMERAREAYNQGLKKCPHS 742
Query: 396 VELWLALVRLE----TYGVARSVLNKARKKLPKERAIWIAAAKLE 436
LWL L RLE AR++L K+R K PK +W+ + +LE
Sbjct: 743 TPLWLLLSRLEEKIGQLTRARAILEKSRLKNPKNPGLWLESVRLE 787
Score = 55.8 bits (133), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 73/308 (23%), Positives = 120/308 (38%), Gaps = 57/308 (18%)
Query: 270 ARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLA 329
AR I + P K W++AA E+ + L+ + CPK E +WL
Sbjct: 559 ARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMG---- 614
Query: 330 RPDEAKSVVAKGVRQIPKSANKIRALRMALDEIPDSVRLWKALVEISSEEEARILLHRAV 389
AKS G ++P AR +L A
Sbjct: 615 ----AKSKWLAG-------------------DVP----------------AARSILALAF 635
Query: 390 ECCPLDVELWLALVRLET----YGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMV 444
+ P E+WLA V+LE+ Y AR +L KAR P R +++ + KLE GN +
Sbjct: 636 QANPNSEEIWLAAVKLESENNEYERARRLLAKARSSAPTAR-VFMKSVKLEWVLGNITAA 694
Query: 445 GKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTW 504
++ E +R + + WM + ++ ++ G ++ N
Sbjct: 695 QELCEEALRHYEDFPKL-----WMMKGQIEEQ-GELMERAREAYNQGLKKCPHSTPLWLL 748
Query: 505 VADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTY 564
++ +EE K G + ARAI + +WL++ +LE G + L+ KA+
Sbjct: 749 LSRLEE--KIGQLTRARAILEKSRLKNPKNPGLWLESVRLEYRAGLKNIANTLMAKALQE 806
Query: 565 CPQAEVLW 572
CP + +LW
Sbjct: 807 CPNSGILW 814
Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 86/371 (23%), Positives = 140/371 (37%), Gaps = 47/371 (12%)
Query: 270 ARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKG-----CNMCPKNEDVWL- 323
ARK++ +N P WI AA+LEE K+I + N N + W+
Sbjct: 449 ARKVLNKARENIPTDRHIWITAAKLEEANGNTQMVEKIIDRAITSLRANGVEINREQWIQ 508
Query: 324 --EACRLARPDEA-----KSVVAKGVRQIPK------------SANKIRALR----MALD 360
E C A ++V+ G+ + + + N + R AL
Sbjct: 509 DAEECDRAGSVATCQAVMRAVIGIGIEEEDRKHTWMEDADSCVAHNALECARAIYAYALQ 568
Query: 361 EIPDSVRLW--KALVEIS--SEEEARILLHRAVECCPLDVELWLALVRLETYG----VAR 412
P +W A E + + E LL RAV CP LWL + + AR
Sbjct: 569 VFPSKKSVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSKWLAGDVPAAR 628
Query: 413 SVLNKARKKLPKERAIWIAAAKLEANGNTSMVGKIIERGIRAL-QGEEVVIDRDTWMKEA 471
S+L A + P IW+AA KLE+ N ER R L + +MK
Sbjct: 629 SILALAFQANPNSEEIWLAAVKLESENNE------YERARRLLAKARSSAPTARVFMKSV 682
Query: 472 EVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVF 531
++ G++ + + ED + W+ + ++ +E AR ++
Sbjct: 683 KLEWVLGNITAAQELCEEALR---HYEDFPKLWMMKGQIEEQGELMERAREAYNQGLKKC 739
Query: 532 LTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDI 591
+WL ++LE+ G A+L K+ P+ LWL + ++ AG +
Sbjct: 740 PHSTPLWLLLSRLEEKIGQLTRARAILEKSRLKNPKNPGLWLESVRLEYRAGLKNIANTL 799
Query: 592 LQEAYAAIPNS 602
+ +A PNS
Sbjct: 800 MAKALQECPNS 810
Score = 42.7 bits (99), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 13/137 (9%)
Query: 269 KARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRL 328
+AR+ K P W+ +RLEE + AR ++ K PKN +WLE+ RL
Sbjct: 727 RAREAYNQGLKKCPHSTPLWLLLSRLEEKIGQLTRARAILEKSRLKNPKNPGLWLESVRL 786
Query: 329 ARPDEAKSVVAKGVRQIPKSANKIRALRMALDEIPDSVRLWKALVEISSEEEARILLHRA 388
G++ I AN + A AL E P+S LW V + + + + A
Sbjct: 787 E--------YRAGLKNI---ANTLMA--KALQECPNSGILWSEAVFLEARPQRKTKSVDA 833
Query: 389 VECCPLDVELWLALVRL 405
++ C D + LA+ +L
Sbjct: 834 LKKCEHDPHVLLAVAKL 850
Score = 38.9 bits (89), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 267 ILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEAC 326
+ +AR I+ +PK P W+++ RLE A + A L+ K CP + +W EA
Sbjct: 759 LTRARAILEKSRLKNPKNPGLWLESVRLEYRAGLKNIANTLMAKALQECPNSGILWSEAV 818
Query: 327 RL-ARPD-EAKSVVA 339
L ARP + KSV A
Sbjct: 819 FLEARPQRKTKSVDA 833
Score = 35.0 bits (79), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 19/177 (10%)
Query: 264 LRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWL 323
L +I A+++ ++ P W+ ++EE AR+ +G CP + +WL
Sbjct: 688 LGNITAAQELCEEALRHYEDFPKLWMMKGQIEEQGELMERAREAYNQGLKKCPHSTPLWL 747
Query: 324 EACRL----ARPDEAKSVVAKGVRQIPKSANKIRALRMALDEIPDSVRL-WKALVEISSE 378
RL + A++++ K + PK+ L + +SVRL ++A ++
Sbjct: 748 LLSRLEEKIGQLTRARAILEKSRLKNPKNP----GLWL------ESVRLEYRAGLK---- 793
Query: 379 EEARILLHRAVECCPLDVELWLALVRLETYGVARSVLNKARKKLPKERAIWIAAAKL 435
A L+ +A++ CP LW V LE ++ A KK + + +A AKL
Sbjct: 794 NIANTLMAKALQECPNSGILWSEAVFLEARPQRKTKSVDALKKCEHDPHVLLAVAKL 850
>sp|Q91YR7|PRP6_MOUSE Pre-mRNA-processing factor 6 OS=Mus musculus GN=Prpf6 PE=2 SV=1
Length = 941
Score = 536 bits (1381), Expect = e-151, Method: Compositional matrix adjust.
Identities = 301/643 (46%), Positives = 404/643 (62%), Gaps = 43/643 (6%)
Query: 6 SKGRLDFLNSKPPANYIAGAGRGASSFTTRSDIGRTRTA--PPSTIIGLPRPKPRDDDGE 63
+K + FL P Y+ G GRGA+ FTTRSDIG R A P P + D +
Sbjct: 2 NKKKKPFLGMPAPLGYVPGLGRGATGFTTRSDIGPARDANDPVDDRHAPPGKRTVGDQMK 61
Query: 64 DDN--DDDGNNGYQQNFDHFEGNDAGLFVNLEYDDEDKEADAVWESIDKLMDSRRKSRRE 121
+ DDD + N+D F G LF + Y+ +D+EADA++ ++DK MD RRK RRE
Sbjct: 62 KNQAADDDDEDLNDTNYDEFNGYAGSLFSSGPYEKDDEEADAIYAALDKRMDERRKERRE 121
Query: 122 ARLEEEIKNYRYKNPTIREEFADLKGKLSTVKAKEWERIPEIGDY-SRRNKRKRFDSFVP 180
R +EEI+ YR + P I+++F+DLK KL+ V +EW IPE+GD ++R + R++ P
Sbjct: 122 QREKEEIEKYRMERPKIQQQFSDLKRKLAEVTEEEWLSIPEVGDARNKRQRNPRYEKLTP 181
Query: 181 VPDSLLQKARQEQQHVIALDPSSRAAGGAESVVT-----------------------DLT 217
VPDS K Q ++ ++DP GG + D+
Sbjct: 182 VPDSFFAKHLQTGENHTSVDPRQTQFGGLNTPYPGGLNTPYPGGMTPGLMTPGTGELDMR 241
Query: 218 AVGEGRGKILTLKLDGISDSVTGLTVFDPSGYLTRMNDLKITTNSELRDILKARKIVRAV 277
+G+ R ++ ++L +SDSV+G TV DP GYLT +N + T ++ DI KAR ++++V
Sbjct: 242 KIGQARNTLMDMRLSQVSDSVSGQTVVDPKGYLTDLNSMIPTHGGDINDIKKARLLLKSV 301
Query: 278 TKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLARPDEAKSV 337
+ +P P WI +ARLEE+ + AR LI KG MCPK+EDVWLEA RL D AK+V
Sbjct: 302 RETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWLEAARLQPGDTAKAV 361
Query: 338 VAKGVRQIPKSAN--------------KIRALRMALDEIPDSVRLWKALVEISSEEEARI 383
VA+ VR +P+S K R LR AL+ +P+SVRLWKA VE+ E+ARI
Sbjct: 362 VAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELEEPEDARI 421
Query: 384 LLHRAVECCPLDVELWLALVRLETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTS 442
+L RAVECCP VELWLAL RLETY AR VLNKAR+ +P +R IWI AAKLE ANGNT
Sbjct: 422 MLSRAVECCPTSVELWLALARLETYENARKVLNKARENIPTDRHIWITAAKLEEANGNTQ 481
Query: 443 MVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKR 502
MV KII+R I +L+ V I+R+ W+++AE DRAGSV TC A++ I IG++EED+K
Sbjct: 482 MVEKIIDRAITSLRANGVEINREQWIQDAEECDRAGSVATCQAVMRAVIGIGIEEEDRKH 541
Query: 503 TWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAV 562
TW+ D + C ++E ARAI++ A VF +KK++WL+AA EK++G RESL ALL++AV
Sbjct: 542 TWMEDADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAV 601
Query: 563 TYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSEEI 605
+CP+AEVLWLMGAK KWLAGDVPA R IL A+ A PNSEEI
Sbjct: 602 AHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEI 644
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 102/225 (45%), Gaps = 31/225 (13%)
Query: 240 GLTVFDPSGYLTRMNDLKITTNSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELAN 299
L VF PS + N R+ L+A +++ + PK + W+ A+ + LA
Sbjct: 566 ALQVF-PSKKSVWLRAAYFEKNHGTRESLEA--LLQRAVAHCPKAEVLWLMGAKSKWLAG 622
Query: 300 EEAAARKLITKGCNMCPKNEDVWLEACRLARPDE----AKSVVAKGVRQIPKSANKIRAL 355
+ AAR ++ P +E++WL A +L + A+ ++AK P + ++++
Sbjct: 623 DVPAARSILALAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARSSAPTARVFMKSV 682
Query: 356 RM----------------ALDEIPDSVRLW--KALVEISSE--EEARILLHRAVECCPLD 395
++ AL D +LW K +E E E+AR ++ ++ CP
Sbjct: 683 KLEWVLGNISAAQELCEEALRHYEDFPKLWMMKGQIEEQGELMEKAREAYNQGLKKCPHS 742
Query: 396 VELWLALVRLE----TYGVARSVLNKARKKLPKERAIWIAAAKLE 436
LWL L RLE AR++L K+R K PK +W+ + +LE
Sbjct: 743 TPLWLLLSRLEEKIGQLTRARAILEKSRLKNPKNPGLWLESVRLE 787
Score = 57.4 bits (137), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 120/308 (38%), Gaps = 57/308 (18%)
Query: 270 ARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLA 329
AR I + P K W++AA E+ + L+ + CPK E +WL
Sbjct: 559 ARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMG---- 614
Query: 330 RPDEAKSVVAKGVRQIPKSANKIRALRMALDEIPDSVRLWKALVEISSEEEARILLHRAV 389
AKS G ++P AR +L A
Sbjct: 615 ----AKSKWLAG-------------------DVP----------------AARSILALAF 635
Query: 390 ECCPLDVELWLALVRLET----YGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMV 444
+ P E+WLA V+LE+ Y AR +L KAR P R +++ + KLE GN S
Sbjct: 636 QANPNSEEIWLAAVKLESENNEYERARRLLAKARSSAPTAR-VFMKSVKLEWVLGNISAA 694
Query: 445 GKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTW 504
++ E +R + + WM + ++ ++ G ++ N
Sbjct: 695 QELCEEALRHYEDFPKL-----WMMKGQIEEQ-GELMEKAREAYNQGLKKCPHSTPLWLL 748
Query: 505 VADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTY 564
++ +EE K G + ARAI + +WL++ +LE G + L+ KA+
Sbjct: 749 LSRLEE--KIGQLTRARAILEKSRLKNPKNPGLWLESVRLEYRAGLKNIANTLMAKALQE 806
Query: 565 CPQAEVLW 572
CP + +LW
Sbjct: 807 CPNSGILW 814
Score = 53.5 bits (127), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 86/371 (23%), Positives = 140/371 (37%), Gaps = 47/371 (12%)
Query: 270 ARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKG-----CNMCPKNEDVWL- 323
ARK++ +N P WI AA+LEE K+I + N N + W+
Sbjct: 449 ARKVLNKARENIPTDRHIWITAAKLEEANGNTQMVEKIIDRAITSLRANGVEINREQWIQ 508
Query: 324 --EACRLARPDEA-----KSVVAKGVRQIPK------------SANKIRALR----MALD 360
E C A ++V+ G+ + + + N + R AL
Sbjct: 509 DAEECDRAGSVATCQAVMRAVIGIGIEEEDRKHTWMEDADSCVAHNALECARAIYAYALQ 568
Query: 361 EIPDSVRLW--KALVEIS--SEEEARILLHRAVECCPLDVELWLALVRLETYG----VAR 412
P +W A E + + E LL RAV CP LWL + + AR
Sbjct: 569 VFPSKKSVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSKWLAGDVPAAR 628
Query: 413 SVLNKARKKLPKERAIWIAAAKLEANGNTSMVGKIIERGIRAL-QGEEVVIDRDTWMKEA 471
S+L A + P IW+AA KLE+ N ER R L + +MK
Sbjct: 629 SILALAFQANPNSEEIWLAAVKLESENNE------YERARRLLAKARSSAPTARVFMKSV 682
Query: 472 EVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVF 531
++ G++ + + ED + W+ + ++ +E AR ++
Sbjct: 683 KLEWVLGNISAAQELCEEALR---HYEDFPKLWMMKGQIEEQGELMEKAREAYNQGLKKC 739
Query: 532 LTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDI 591
+WL ++LE+ G A+L K+ P+ LWL + ++ AG +
Sbjct: 740 PHSTPLWLLLSRLEEKIGQLTRARAILEKSRLKNPKNPGLWLESVRLEYRAGLKNIANTL 799
Query: 592 LQEAYAAIPNS 602
+ +A PNS
Sbjct: 800 MAKALQECPNS 810
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 13/137 (9%)
Query: 269 KARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRL 328
KAR+ K P W+ +RLEE + AR ++ K PKN +WLE+ RL
Sbjct: 727 KAREAYNQGLKKCPHSTPLWLLLSRLEEKIGQLTRARAILEKSRLKNPKNPGLWLESVRL 786
Query: 329 ARPDEAKSVVAKGVRQIPKSANKIRALRMALDEIPDSVRLWKALVEISSEEEARILLHRA 388
G++ I AN + A AL E P+S LW V + + + + A
Sbjct: 787 E--------YRAGLKNI---ANTLMA--KALQECPNSGILWSEAVFLEARPQRKTKSVDA 833
Query: 389 VECCPLDVELWLALVRL 405
++ C D + LA+ +L
Sbjct: 834 LKKCEHDPHVLLAVAKL 850
Score = 38.9 bits (89), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 267 ILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEAC 326
+ +AR I+ +PK P W+++ RLE A + A L+ K CP + +W EA
Sbjct: 759 LTRARAILEKSRLKNPKNPGLWLESVRLEYRAGLKNIANTLMAKALQECPNSGILWSEAV 818
Query: 327 RL-ARPD-EAKSVVA 339
L ARP + KSV A
Sbjct: 819 FLEARPQRKTKSVDA 833
Score = 34.7 bits (78), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 19/177 (10%)
Query: 264 LRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWL 323
L +I A+++ ++ P W+ ++EE AR+ +G CP + +WL
Sbjct: 688 LGNISAAQELCEEALRHYEDFPKLWMMKGQIEEQGELMEKAREAYNQGLKKCPHSTPLWL 747
Query: 324 EACRL----ARPDEAKSVVAKGVRQIPKSANKIRALRMALDEIPDSVRL-WKALVEISSE 378
RL + A++++ K + PK+ L + +SVRL ++A ++
Sbjct: 748 LLSRLEEKIGQLTRARAILEKSRLKNPKNP----GLWL------ESVRLEYRAGLK---- 793
Query: 379 EEARILLHRAVECCPLDVELWLALVRLETYGVARSVLNKARKKLPKERAIWIAAAKL 435
A L+ +A++ CP LW V LE ++ A KK + + +A AKL
Sbjct: 794 NIANTLMAKALQECPNSGILWSEAVFLEARPQRKTKSVDALKKCEHDPHVLLAVAKL 850
>sp|O94906|PRP6_HUMAN Pre-mRNA-processing factor 6 OS=Homo sapiens GN=PRPF6 PE=1 SV=1
Length = 941
Score = 536 bits (1380), Expect = e-151, Method: Compositional matrix adjust.
Identities = 301/643 (46%), Positives = 404/643 (62%), Gaps = 43/643 (6%)
Query: 6 SKGRLDFLNSKPPANYIAGAGRGASSFTTRSDIGRTRTA--PPSTIIGLPRPKPRDDDGE 63
+K + FL P Y+ G GRGA+ FTTRSDIG R A P P + D +
Sbjct: 2 NKKKKPFLGMPAPLGYVPGLGRGATGFTTRSDIGPARDANDPVDDRHAPPGKRTVGDQMK 61
Query: 64 DDN--DDDGNNGYQQNFDHFEGNDAGLFVNLEYDDEDKEADAVWESIDKLMDSRRKSRRE 121
+ DDD + N+D F G LF + Y+ +D+EADA++ ++DK MD RRK RRE
Sbjct: 62 KNQAADDDDEDLNDTNYDEFNGYAGSLFSSGPYEKDDEEADAIYAALDKRMDERRKERRE 121
Query: 122 ARLEEEIKNYRYKNPTIREEFADLKGKLSTVKAKEWERIPEIGDY-SRRNKRKRFDSFVP 180
R +EEI+ YR + P I+++F+DLK KL+ V +EW IPE+GD ++R + R++ P
Sbjct: 122 QREKEEIEKYRMERPKIQQQFSDLKRKLAEVTEEEWLSIPEVGDARNKRQRNPRYEKLTP 181
Query: 181 VPDSLLQKARQEQQHVIALDPSSRAAGGAESVVT-----------------------DLT 217
VPDS K Q ++ ++DP GG + D+
Sbjct: 182 VPDSFFAKHLQTGENHTSVDPRQTQFGGLNTPYPGGLNTPYPGGMTPGLMTPGTGELDMR 241
Query: 218 AVGEGRGKILTLKLDGISDSVTGLTVFDPSGYLTRMNDLKITTNSELRDILKARKIVRAV 277
+G+ R ++ ++L +SDSV+G TV DP GYLT +N + T ++ DI KAR ++++V
Sbjct: 242 KIGQARNTLMDMRLSQVSDSVSGQTVVDPKGYLTDLNSMIPTHGGDINDIKKARLLLKSV 301
Query: 278 TKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLARPDEAKSV 337
+ +P P WI +ARLEE+ + AR LI KG MCPK+EDVWLEA RL D AK+V
Sbjct: 302 RETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWLEAARLQPGDTAKAV 361
Query: 338 VAKGVRQIPKSAN--------------KIRALRMALDEIPDSVRLWKALVEISSEEEARI 383
VA+ VR +P+S K R LR AL+ +P+SVRLWKA VE+ E+ARI
Sbjct: 362 VAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELEEPEDARI 421
Query: 384 LLHRAVECCPLDVELWLALVRLETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTS 442
+L RAVECCP VELWLAL RLETY AR VLNKAR+ +P +R IWI AAKLE ANGNT
Sbjct: 422 MLSRAVECCPTSVELWLALARLETYENARKVLNKARENIPTDRHIWITAAKLEEANGNTQ 481
Query: 443 MVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKR 502
MV KII+R I +L+ V I+R+ W+++AE DRAGSV TC A++ I IG++EED+K
Sbjct: 482 MVEKIIDRAITSLRANGVEINREQWIQDAEECDRAGSVATCQAVMRAVIGIGIEEEDRKH 541
Query: 503 TWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAV 562
TW+ D + C ++E ARAI++ A VF +KK++WL+AA EK++G RESL ALL++AV
Sbjct: 542 TWMEDADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAV 601
Query: 563 TYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSEEI 605
+CP+AEVLWLMGAK KWLAGDVPA R IL A+ A PNSEEI
Sbjct: 602 AHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEI 644
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 103/225 (45%), Gaps = 31/225 (13%)
Query: 240 GLTVFDPSGYLTRMNDLKITTNSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELAN 299
L VF PS + N R+ L+A +++ + PK + W+ A+ + LA
Sbjct: 566 ALQVF-PSKKSVWLRAAYFEKNHGTRESLEA--LLQRAVAHCPKAEVLWLMGAKSKWLAG 622
Query: 300 EEAAARKLITKGCNMCPKNEDVWLEACRLARPDE----AKSVVAKGVRQIPKSANKIRAL 355
+ AAR ++ P +E++WL A +L ++ A+ ++AK P + ++++
Sbjct: 623 DVPAARSILALAFQANPNSEEIWLAAVKLESENDEYERARRLLAKARSSAPTARVFMKSV 682
Query: 356 RM----------------ALDEIPDSVRLW--KALVEISSE--EEARILLHRAVECCPLD 395
++ AL D +LW K +E E E+AR ++ ++ CP
Sbjct: 683 KLEWVQDNIRAAQDLCEEALRHYEDFPKLWMMKGQIEEQKEMMEKAREAYNQGLKKCPHS 742
Query: 396 VELWLALVRLE----TYGVARSVLNKARKKLPKERAIWIAAAKLE 436
LWL L RLE AR++L K+R K PK +W+ + +LE
Sbjct: 743 TPLWLLLSRLEEKIGQLTRARAILEKSRLKNPKNPGLWLESVRLE 787
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/308 (22%), Positives = 114/308 (37%), Gaps = 57/308 (18%)
Query: 270 ARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLA 329
AR I + P K W++AA E+ + L+ + CPK E +WL
Sbjct: 559 ARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMG---- 614
Query: 330 RPDEAKSVVAKGVRQIPKSANKIRALRMALDEIPDSVRLWKALVEISSEEEARILLHRAV 389
AKS G ++P AR +L A
Sbjct: 615 ----AKSKWLAG-------------------DVP----------------AARSILALAF 635
Query: 390 ECCPLDVELWLALVRLET----YGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMV 444
+ P E+WLA V+LE+ Y AR +L KAR P R +++ + KLE N
Sbjct: 636 QANPNSEEIWLAAVKLESENDEYERARRLLAKARSSAPTAR-VFMKSVKLEWVQDNIRAA 694
Query: 445 GKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTW 504
+ E +R + + WM + ++ ++ + ++ W
Sbjct: 695 QDLCEEALRHYEDFPKL-----WMMKGQIEEQKEMMEKAREAYNQGLKKCPHSTP---LW 746
Query: 505 VADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTY 564
+ +K G + ARAI + +WL++ +LE G + L+ KA+
Sbjct: 747 LLLSRLEEKIGQLTRARAILEKSRLKNPKNPGLWLESVRLEYRAGLKNIANTLMAKALQE 806
Query: 565 CPQAEVLW 572
CP + +LW
Sbjct: 807 CPNSGILW 814
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 79/416 (18%), Positives = 150/416 (36%), Gaps = 117/416 (28%)
Query: 266 DILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEA 325
DI ++++R ++ P W A LEE + AR ++++ CP + ++WL
Sbjct: 385 DIRAKKRVLRKALEHVPNSVRLWKAAVELEEPED----ARIMLSRAVECCPTSVELWLAL 440
Query: 326 CRLARPDEAKSVVAKGVRQIP-------------KSANKIRALRMALDEIPDSVR----- 367
RL + A+ V+ K IP ++ + + +D S+R
Sbjct: 441 ARLETYENARKVLNKARENIPTDRHIWITAAKLEEANGNTQMVEKIIDRAITSLRANGVE 500
Query: 368 ------------------------LWKALVEISSEEEAR----------ILLHRAVECCP 393
+ +A++ I EEE R + H A+EC
Sbjct: 501 INREQWIQDAEECDRAGSVATCQAVMRAVIGIGIEEEDRKHTWMEDADSCVAHNALEC-- 558
Query: 394 LDVELWLALVRLETYGVARSVLNKARKKLPKERAIWIAAAKLEAN-GNTSMVGKIIERGI 452
AR++ A + P ++++W+ AA E N G + +++R +
Sbjct: 559 -----------------ARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAV 601
Query: 453 RALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECK 512
EV+ W+ A+ AG V +I+ + + E+ W+A V+
Sbjct: 602 AHCPKAEVL-----WLMGAKSKWLAGDVPAARSILALAFQANPNSEE---IWLAAVKLES 653
Query: 513 KRGSIETARAIFS------PACTVFL-------TKKNI--------------------WL 539
+ E AR + + P VF+ + NI W+
Sbjct: 654 ENDEYERARRLLAKARSSAPTARVFMKSVKLEWVQDNIRAAQDLCEEALRHYEDFPKLWM 713
Query: 540 KAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEA 595
Q+E+ E + + CP + LWL+ ++ + G + R IL+++
Sbjct: 714 MKGQIEEQKEMMEKAREAYNQGLKKCPHSTPLWLLLSRLEEKIGQLTRARAILEKS 769
Score = 50.1 bits (118), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 84/371 (22%), Positives = 140/371 (37%), Gaps = 47/371 (12%)
Query: 270 ARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKG-----CNMCPKNEDVWL- 323
ARK++ +N P WI AA+LEE K+I + N N + W+
Sbjct: 449 ARKVLNKARENIPTDRHIWITAAKLEEANGNTQMVEKIIDRAITSLRANGVEINREQWIQ 508
Query: 324 --EACRLARPDEA-----KSVVAKGVRQIPK------------SANKIRALR----MALD 360
E C A ++V+ G+ + + + N + R AL
Sbjct: 509 DAEECDRAGSVATCQAVMRAVIGIGIEEEDRKHTWMEDADSCVAHNALECARAIYAYALQ 568
Query: 361 EIPDSVRLW--KALVEIS--SEEEARILLHRAVECCPLDVELWLALVRLETYG----VAR 412
P +W A E + + E LL RAV CP LWL + + AR
Sbjct: 569 VFPSKKSVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSKWLAGDVPAAR 628
Query: 413 SVLNKARKKLPKERAIWIAAAKLEANGNTSMVGKIIERGIRAL-QGEEVVIDRDTWMKEA 471
S+L A + P IW+AA KLE+ + ER R L + +MK
Sbjct: 629 SILALAFQANPNSEEIWLAAVKLESENDE------YERARRLLAKARSSAPTARVFMKSV 682
Query: 472 EVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVF 531
++ ++ + + ED + W+ + +++ +E AR ++
Sbjct: 683 KLEWVQDNIRAAQDLCEEALR---HYEDFPKLWMMKGQIEEQKEMMEKAREAYNQGLKKC 739
Query: 532 LTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDI 591
+WL ++LE+ G A+L K+ P+ LWL + ++ AG +
Sbjct: 740 PHSTPLWLLLSRLEEKIGQLTRARAILEKSRLKNPKNPGLWLESVRLEYRAGLKNIANTL 799
Query: 592 LQEAYAAIPNS 602
+ +A PNS
Sbjct: 800 MAKALQECPNS 810
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 13/137 (9%)
Query: 269 KARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRL 328
KAR+ K P W+ +RLEE + AR ++ K PKN +WLE+ RL
Sbjct: 727 KAREAYNQGLKKCPHSTPLWLLLSRLEEKIGQLTRARAILEKSRLKNPKNPGLWLESVRL 786
Query: 329 ARPDEAKSVVAKGVRQIPKSANKIRALRMALDEIPDSVRLWKALVEISSEEEARILLHRA 388
G++ I AN + A AL E P+S LW + + + + R A
Sbjct: 787 E--------YRAGLKNI---ANTLMA--KALQECPNSGILWSEAIFLEARPQRRTKSVDA 833
Query: 389 VECCPLDVELWLALVRL 405
++ C D + LA+ +L
Sbjct: 834 LKKCEHDPHVLLAVAKL 850
Score = 38.5 bits (88), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 267 ILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEAC 326
+ +AR I+ +PK P W+++ RLE A + A L+ K CP + +W EA
Sbjct: 759 LTRARAILEKSRLKNPKNPGLWLESVRLEYRAGLKNIANTLMAKALQECPNSGILWSEAI 818
Query: 327 RL-ARP 331
L ARP
Sbjct: 819 FLEARP 824
>sp|Q2KJJ0|PRP6_BOVIN Pre-mRNA-processing factor 6 OS=Bos taurus GN=PRPF6 PE=2 SV=1
Length = 941
Score = 534 bits (1376), Expect = e-151, Method: Compositional matrix adjust.
Identities = 300/643 (46%), Positives = 403/643 (62%), Gaps = 43/643 (6%)
Query: 6 SKGRLDFLNSKPPANYIAGAGRGASSFTTRSDIGRTRTA--PPSTIIGLPRPKPRDDDGE 63
+K + FL P Y+ G GRGA+ FTTRSDIG R A P P + D +
Sbjct: 2 NKKKKPFLGMPAPLGYVPGLGRGATGFTTRSDIGPARDANDPVDDRHAPPGKRTVGDQMK 61
Query: 64 DDN--DDDGNNGYQQNFDHFEGNDAGLFVNLEYDDEDKEADAVWESIDKLMDSRRKSRRE 121
DDD + N+D F G LF + Y+ +D+EADA++ ++DK MD RRK RRE
Sbjct: 62 KSQAADDDDEDLNDTNYDEFNGYAGSLFSSGPYEKDDEEADAIYAALDKRMDERRKERRE 121
Query: 122 ARLEEEIKNYRYKNPTIREEFADLKGKLSTVKAKEWERIPEIGDY-SRRNKRKRFDSFVP 180
R +EEI+ YR + P I+++F+DLK KL+ V +EW IPE+GD ++R + R++ P
Sbjct: 122 QREKEEIEKYRMERPKIQQQFSDLKRKLAEVTEEEWLSIPEVGDARNKRQRNPRYEKLTP 181
Query: 181 VPDSLLQKARQEQQHVIALDPSSRAAGGAESVVT-----------------------DLT 217
VPDS K Q ++ ++DP GG + D+
Sbjct: 182 VPDSFFAKHLQTGENHTSVDPRQTQFGGLNTPYPGGLNTPYPGGMTPGLMTPGTGELDMR 241
Query: 218 AVGEGRGKILTLKLDGISDSVTGLTVFDPSGYLTRMNDLKITTNSELRDILKARKIVRAV 277
+G+ R ++ ++L +SDSV+G TV DP GYLT +N + T ++ DI KAR ++++V
Sbjct: 242 KIGQARNTLMDMRLSQVSDSVSGQTVVDPKGYLTDLNSMIPTHGGDINDIKKARLLLKSV 301
Query: 278 TKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLARPDEAKSV 337
+ +P P WI +ARLEE+ + AR LI KG MCPK+EDVWLEA RL D AK+V
Sbjct: 302 RETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWLEAARLQPGDTAKAV 361
Query: 338 VAKGVRQIPKSAN--------------KIRALRMALDEIPDSVRLWKALVEISSEEEARI 383
VA+ VR +P+S K R LR AL+ +P+SVRLWKA VE+ E+ARI
Sbjct: 362 VAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELEEPEDARI 421
Query: 384 LLHRAVECCPLDVELWLALVRLETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTS 442
+L RAVECCP VELWLAL RLETY AR VLNKAR+ +P +R IWI AAKLE ANGNT
Sbjct: 422 MLSRAVECCPTSVELWLALARLETYENARKVLNKARENIPTDRHIWITAAKLEEANGNTQ 481
Query: 443 MVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKR 502
MV KII+R I +L+ V I+R+ W+++AE D+AGSV TC A++ I IG++EED+K
Sbjct: 482 MVEKIIDRAITSLRANGVEINREQWIQDAEECDKAGSVATCQAVMRAVIGIGIEEEDRKH 541
Query: 503 TWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAV 562
TW+ D + C ++E ARAI++ A VF +KK++WL+AA EK++G RESL ALL++AV
Sbjct: 542 TWMEDADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAV 601
Query: 563 TYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSEEI 605
+CP+AEVLWLMGAK KWLAGDVPA R IL A+ A PNSEEI
Sbjct: 602 AHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEI 644
Score = 66.2 bits (160), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 101/225 (44%), Gaps = 31/225 (13%)
Query: 240 GLTVFDPSGYLTRMNDLKITTNSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELAN 299
L VF PS + N R+ L+A +++ + PK + W+ A+ + LA
Sbjct: 566 ALQVF-PSKKSVWLRAAYFEKNHGTRESLEA--LLQRAVAHCPKAEVLWLMGAKSKWLAG 622
Query: 300 EEAAARKLITKGCNMCPKNEDVWLEACRLARPDE----AKSVVAKGVRQIPKSANKIRAL 355
+ AAR ++ P +E++WL A +L + A+ ++AK P + ++++
Sbjct: 623 DVPAARSILALAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARSSAPTARVFMKSV 682
Query: 356 RM----------------ALDEIPDSVRLWKALVEISSEEE----ARILLHRAVECCPLD 395
++ AL D +LW +I +EE AR ++ ++ CP
Sbjct: 683 KLEWVLGNLVAAQELCEEALKHYEDFPKLWMMKGQIEEQEELVEKAREAYNQGLKKCPHS 742
Query: 396 VELWLALVRLE----TYGVARSVLNKARKKLPKERAIWIAAAKLE 436
LWL L RLE AR++L K+R K PK +W+ + +LE
Sbjct: 743 TPLWLLLSRLEEKVGQLTRARAILEKSRLKNPKNPGLWLESVRLE 787
Score = 56.2 bits (134), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 87/371 (23%), Positives = 142/371 (38%), Gaps = 47/371 (12%)
Query: 270 ARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKG-----CNMCPKNEDVWL- 323
ARK++ +N P WI AA+LEE K+I + N N + W+
Sbjct: 449 ARKVLNKARENIPTDRHIWITAAKLEEANGNTQMVEKIIDRAITSLRANGVEINREQWIQ 508
Query: 324 --EACRLARPDEA-----KSVVAKGVRQIPK------------SANKIRALR----MALD 360
E C A ++V+ G+ + + + N + R AL
Sbjct: 509 DAEECDKAGSVATCQAVMRAVIGIGIEEEDRKHTWMEDADSCVAHNALECARAIYAYALQ 568
Query: 361 EIPDSVRLW--KALVEIS--SEEEARILLHRAVECCPLDVELWLALVRLETYG----VAR 412
P +W A E + + E LL RAV CP LWL + + AR
Sbjct: 569 VFPSKKSVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSKWLAGDVPAAR 628
Query: 413 SVLNKARKKLPKERAIWIAAAKLEANGNTSMVGKIIERGIRAL-QGEEVVIDRDTWMKEA 471
S+L A + P IW+AA KLE+ N ER R L + +MK
Sbjct: 629 SILALAFQANPNSEEIWLAAVKLESENNE------YERARRLLAKARSSAPTARVFMKSV 682
Query: 472 EVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVF 531
++ G++V + ++ ED + W+ + ++ +E AR ++
Sbjct: 683 KLEWVLGNLVAAQELCEEALK---HYEDFPKLWMMKGQIEEQEELVEKAREAYNQGLKKC 739
Query: 532 LTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDI 591
+WL ++LE+ G A+L K+ P+ LWL + ++ AG +
Sbjct: 740 PHSTPLWLLLSRLEEKVGQLTRARAILEKSRLKNPKNPGLWLESVRLEYRAGLKNIASTL 799
Query: 592 LQEAYAAIPNS 602
+ +A PNS
Sbjct: 800 MAKALQECPNS 810
Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 71/308 (23%), Positives = 116/308 (37%), Gaps = 57/308 (18%)
Query: 270 ARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLA 329
AR I + P K W++AA E+ + L+ + CPK E +WL
Sbjct: 559 ARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMG---- 614
Query: 330 RPDEAKSVVAKGVRQIPKSANKIRALRMALDEIPDSVRLWKALVEISSEEEARILLHRAV 389
AKS G ++P AR +L A
Sbjct: 615 ----AKSKWLAG-------------------DVP----------------AARSILALAF 635
Query: 390 ECCPLDVELWLALVRLET----YGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMV 444
+ P E+WLA V+LE+ Y AR +L KAR P R +++ + KLE GN
Sbjct: 636 QANPNSEEIWLAAVKLESENNEYERARRLLAKARSSAPTAR-VFMKSVKLEWVLGNLVAA 694
Query: 445 GKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTW 504
++ E ++ + + WM + ++ ++ V ++ W
Sbjct: 695 QELCEEALKHYEDFPKL-----WMMKGQIEEQEELVEKAREAYNQGLKKCPHSTP---LW 746
Query: 505 VADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTY 564
+ +K G + ARAI + +WL++ +LE G + L+ KA+
Sbjct: 747 LLLSRLEEKVGQLTRARAILEKSRLKNPKNPGLWLESVRLEYRAGLKNIASTLMAKALQE 806
Query: 565 CPQAEVLW 572
CP + VLW
Sbjct: 807 CPNSGVLW 814
Score = 42.4 bits (98), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 13/137 (9%)
Query: 269 KARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRL 328
KAR+ K P W+ +RLEE + AR ++ K PKN +WLE+ RL
Sbjct: 727 KAREAYNQGLKKCPHSTPLWLLLSRLEEKVGQLTRARAILEKSRLKNPKNPGLWLESVRL 786
Query: 329 ARPDEAKSVVAKGVRQIPKSANKIRALRMALDEIPDSVRLWKALVEISSEEEARILLHRA 388
G++ I + + AL E P+S LW + + + + + A
Sbjct: 787 E--------YRAGLKNIAST-----LMAKALQECPNSGVLWSEAIFLEARPQRKTKSVDA 833
Query: 389 VECCPLDVELWLALVRL 405
++ C D + LA+ +L
Sbjct: 834 LKKCEHDPHVLLAVAKL 850
Score = 38.5 bits (88), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 267 ILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEAC 326
+ +AR I+ +PK P W+++ RLE A + A L+ K CP + +W EA
Sbjct: 759 LTRARAILEKSRLKNPKNPGLWLESVRLEYRAGLKNIASTLMAKALQECPNSGVLWSEAI 818
Query: 327 RL-ARPD-EAKSVVA 339
L ARP + KSV A
Sbjct: 819 FLEARPQRKTKSVDA 833
>sp|Q5RCC2|PRP6_PONAB Pre-mRNA-processing factor 6 OS=Pongo abelii GN=PRPF6 PE=2 SV=1
Length = 941
Score = 529 bits (1363), Expect = e-149, Method: Compositional matrix adjust.
Identities = 299/643 (46%), Positives = 399/643 (62%), Gaps = 43/643 (6%)
Query: 6 SKGRLDFLNSKPPANYIAGAGRGASSFTTRSDIGRTRTA-PPSTIIGLPRPKPRDDDGED 64
+K + FL P Y+ G GRGA+ FTTRSDIG R A P P K D
Sbjct: 2 NKKKKPFLGMPAPLGYVPGLGRGATGFTTRSDIGPARDANDPVDDRHAPPGKRTVGDQMK 61
Query: 65 DND---DDGNNGYQQNFDHFEGNDAGLFVNLEYDDEDKEADAVWESIDKLMDSRRKSRRE 121
N DD + N+D F G LF + Y+ +D+EADA++ ++DK MD RRK RRE
Sbjct: 62 KNQAADDDDEDLNDTNYDEFNGYAGSLFSSGPYEKDDEEADAIYAALDKRMDERRKERRE 121
Query: 122 ARLEEEIKNYRYKNPTIREEFADLKGKLSTVKAKEWERIPEIGDY-SRRNKRKRFDSFVP 180
R +EEI+ YR + P I+++F+DLK KL+ V +EW IPE+GD ++R + R++ P
Sbjct: 122 QREKEEIEKYRMERPKIQQQFSDLKRKLAEVTEEEWLSIPEVGDARNKRQRNPRYEKLTP 181
Query: 181 VPDSLLQKARQEQQHVIALDPSSRAAGGAESVVT-----------------------DLT 217
VPDS K Q ++ ++DP GG + D+
Sbjct: 182 VPDSFFAKHLQTGENHTSVDPRQTQFGGLNTPYPGGLNTPYPGGMTPGLMTPGTGELDMR 241
Query: 218 AVGEGRGKILTLKLDGISDSVTGLTVFDPSGYLTRMNDLKITTNSELRDILKARKIVRAV 277
+G+ R ++ ++L +SDSV+G TV DP GYLT +N + T ++ DI KAR ++++V
Sbjct: 242 KIGQARNTLMDMRLSQVSDSVSGQTVVDPKGYLTDLNSMIPTHGGDINDIKKARLLLKSV 301
Query: 278 TKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLARPDEAKSV 337
+ +P P WI +ARLEE+ + AR LI KG MCPK+EDVWLEA RL D AK+V
Sbjct: 302 RETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWLEAARLQPGDTAKAV 361
Query: 338 VAKGVRQIPKSAN--------------KIRALRMALDEIPDSVRLWKALVEISSEEEARI 383
VA+ VR +P+ K R LR AL+ +P+SVRLWKA VE+ E+ARI
Sbjct: 362 VAQAVRHLPQFVRIYIRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELEEPEDARI 421
Query: 384 LLHRAVECCPLDVELWLALVRLETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTS 442
+L RAVECCP VELWLAL RLETY AR VLNKAR+ +P +R IWI AAKLE ANGNT
Sbjct: 422 MLSRAVECCPTSVELWLALARLETYENARKVLNKARENIPTDRHIWITAAKLEEANGNTQ 481
Query: 443 MVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKR 502
MV KII+R I +L+ V I+R+ W+++AE DRAGSV TC A++ I IG++EED+K
Sbjct: 482 MVEKIIDRAITSLRANGVEINREQWIQDAEECDRAGSVATCQAVMRAVIGIGIEEEDRKH 541
Query: 503 TWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAV 562
TW+ D + C ++E ARAI++ A VF +KK++WL+AA K++G RESL ALL++AV
Sbjct: 542 TWMEDADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFGKNHGTRESLEALLQRAV 601
Query: 563 TYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSEEI 605
+CP+AEVLWLMGAK KWL GDVPA R IL A+ A PNSEEI
Sbjct: 602 AHCPKAEVLWLMGAKSKWLTGDVPAARSILALAFQANPNSEEI 644
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 101/225 (44%), Gaps = 31/225 (13%)
Query: 240 GLTVFDPSGYLTRMNDLKITTNSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELAN 299
L VF PS + N R+ L+A +++ + PK + W+ A+ + L
Sbjct: 566 ALQVF-PSKKSVWLRAAYFGKNHGTRESLEA--LLQRAVAHCPKAEVLWLMGAKSKWLTG 622
Query: 300 EEAAARKLITKGCNMCPKNEDVWLEACRLARPDE----AKSVVAKGVRQIPKSANKIRAL 355
+ AAR ++ P +E++WL A +L ++ A+ ++AK P + ++++
Sbjct: 623 DVPAARSILALAFQANPNSEEIWLAAVKLESENDEYERARRLLAKARSSAPTARVFMKSV 682
Query: 356 RM----------------ALDEIPDSVRLW--KALVEISSE--EEARILLHRAVECCPLD 395
++ AL D +LW K +E E E+AR ++ ++ CP
Sbjct: 683 KLEWVQDNIRAAQDLCEEALRHYEDFPKLWMMKGQIEEQKEMMEKAREAYNQGLKKCPHS 742
Query: 396 VELWLALVRLE----TYGVARSVLNKARKKLPKERAIWIAAAKLE 436
LWL L RLE R++L K+R K PK +W+ + +LE
Sbjct: 743 TPLWLLLSRLEEKIGQLTRTRAILEKSRLKNPKNPGLWLESVRLE 787
Score = 49.7 bits (117), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 65/294 (22%), Positives = 113/294 (38%), Gaps = 31/294 (10%)
Query: 288 WIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLARPDEAKSVVAKGVRQIPK 347
W++ A N AR + + P + VWL A + G R+ +
Sbjct: 543 WMEDADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFGK--------NHGTRESLE 594
Query: 348 SANKIRALRMALDEIPDSVRLW----KALVEISSEEEARILLHRAVECCPLDVELWLALV 403
+ L+ A+ P + LW K+ AR +L A + P E+WLA V
Sbjct: 595 AL-----LQRAVAHCPKAEVLWLMGAKSKWLTGDVPAARSILALAFQANPNSEEIWLAAV 649
Query: 404 RLET----YGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGE 458
+LE+ Y AR +L KAR P R +++ + KLE N + E +R +
Sbjct: 650 KLESENDEYERARRLLAKARSSAPTAR-VFMKSVKLEWVQDNIRAAQDLCEEALRHYEDF 708
Query: 459 EVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIE 518
+ WM + ++ ++ + ++ W+ +K G +
Sbjct: 709 PKL-----WMMKGQIEEQKEMMEKAREAYNQGLKKCPHSTP---LWLLLSRLEEKIGQLT 760
Query: 519 TARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLW 572
RAI + +WL++ +LE G + L+ KA+ CP + +LW
Sbjct: 761 RTRAILEKSRLKNPKNPGLWLESVRLEYRAGLKNIANTLMAKALQECPNSGILW 814
Score = 49.3 bits (116), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 85/371 (22%), Positives = 139/371 (37%), Gaps = 47/371 (12%)
Query: 270 ARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKG-----CNMCPKNEDVWL- 323
ARK++ +N P WI AA+LEE K+I + N N + W+
Sbjct: 449 ARKVLNKARENIPTDRHIWITAAKLEEANGNTQMVEKIIDRAITSLRANGVEINREQWIQ 508
Query: 324 --EACRLARPDEA-----KSVVAKGVRQIPK------------SANKIRALR----MALD 360
E C A ++V+ G+ + + + N + R AL
Sbjct: 509 DAEECDRAGSVATCQAVMRAVIGIGIEEEDRKHTWMEDADSCVAHNALECARAIYAYALQ 568
Query: 361 EIPDSVRLWKALVEIS----SEEEARILLHRAVECCPLDVELWL--ALVRLETYGV--AR 412
P +W + E LL RAV CP LWL A + T V AR
Sbjct: 569 VFPSKKSVWLRAAYFGKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSKWLTGDVPAAR 628
Query: 413 SVLNKARKKLPKERAIWIAAAKLEANGNTSMVGKIIERGIRAL-QGEEVVIDRDTWMKEA 471
S+L A + P IW+AA KLE+ + ER R L + +MK
Sbjct: 629 SILALAFQANPNSEEIWLAAVKLESENDE------YERARRLLAKARSSAPTARVFMKSV 682
Query: 472 EVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVF 531
++ ++ + + ED + W+ + +++ +E AR ++
Sbjct: 683 KLEWVQDNIRAAQDLCEEALR---HYEDFPKLWMMKGQIEEQKEMMEKAREAYNQGLKKC 739
Query: 532 LTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDI 591
+WL ++LE+ G A+L K+ P+ LWL + ++ AG +
Sbjct: 740 PHSTPLWLLLSRLEEKIGQLTRTRAILEKSRLKNPKNPGLWLESVRLEYRAGLKNIANTL 799
Query: 592 LQEAYAAIPNS 602
+ +A PNS
Sbjct: 800 MAKALQECPNS 810
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 78/399 (19%), Positives = 147/399 (36%), Gaps = 93/399 (23%)
Query: 263 ELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVW 322
EL + AR ++ + P W+ ARLE N ARK++ K P + +W
Sbjct: 412 ELEEPEDARIMLSRAVECCPTSVELWLALARLETYEN----ARKVLNKARENIPTDRHIW 467
Query: 323 LEACRLARPDEAKSVVAKGVRQIPKSANKIRALRMALD---------------EIPDSVR 367
+ A +L + +V K I ++ +RA + ++ +
Sbjct: 468 ITAAKLEEANGNTQMVEK---IIDRAITSLRANGVEINREQWIQDAEECDRAGSVATCQA 524
Query: 368 LWKALVEISSEEEAR----------ILLHRAVECCPLDVELWLALVRLETYGVARSVLNK 417
+ +A++ I EEE R + H A+EC AR++
Sbjct: 525 VMRAVIGIGIEEEDRKHTWMEDADSCVAHNALEC-------------------ARAIYAY 565
Query: 418 ARKKLPKERAIWIAAAKLEAN-GNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADR 476
A + P ++++W+ AA N G + +++R + EV+ W+ A+
Sbjct: 566 ALQVFPSKKSVWLRAAYFGKNHGTRESLEALLQRAVAHCPKAEVL-----WLMGAKSKWL 620
Query: 477 AGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFS------PACTV 530
G V +I+ + + E+ W+A V+ + E AR + + P V
Sbjct: 621 TGDVPAARSILALAFQANPNSEE---IWLAAVKLESENDEYERARRLLAKARSSAPTARV 677
Query: 531 FL-------TKKNI--------------------WLKAAQLEKSYGCRESLIALLRKAVT 563
F+ + NI W+ Q+E+ E + +
Sbjct: 678 FMKSVKLEWVQDNIRAAQDLCEEALRHYEDFPKLWMMKGQIEEQKEMMEKAREAYNQGLK 737
Query: 564 YCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNS 602
CP + LWL+ ++ + G + TR IL+++ P +
Sbjct: 738 KCPHSTPLWLLLSRLEEKIGQLTRTRAILEKSRLKNPKN 776
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 60/137 (43%), Gaps = 13/137 (9%)
Query: 269 KARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRL 328
KAR+ K P W+ +RLEE + R ++ K PKN +WLE+ RL
Sbjct: 727 KAREAYNQGLKKCPHSTPLWLLLSRLEEKIGQLTRTRAILEKSRLKNPKNPGLWLESVRL 786
Query: 329 ARPDEAKSVVAKGVRQIPKSANKIRALRMALDEIPDSVRLWKALVEISSEEEARILLHRA 388
G++ I AN + A AL E P+S LW + + + + R A
Sbjct: 787 E--------YRAGLKNI---ANTLMA--KALQECPNSGILWSEAIFLEARPQRRTKSVDA 833
Query: 389 VECCPLDVELWLALVRL 405
++ C D + LA+ +L
Sbjct: 834 LKKCEHDPHVLLAVAKL 850
Score = 37.0 bits (84), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 267 ILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEAC 326
+ + R I+ +PK P W+++ RLE A + A L+ K CP + +W EA
Sbjct: 759 LTRTRAILEKSRLKNPKNPGLWLESVRLEYRAGLKNIANTLMAKALQECPNSGILWSEAI 818
Query: 327 RL-ARP 331
L ARP
Sbjct: 819 FLEARP 824
Score = 33.9 bits (76), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 70/174 (40%), Gaps = 17/174 (9%)
Query: 266 DILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEA 325
+I A+ + ++ P W+ ++EE AR+ +G CP + +WL
Sbjct: 690 NIRAAQDLCEEALRHYEDFPKLWMMKGQIEEQKEMMEKAREAYNQGLKKCPHSTPLWLLL 749
Query: 326 CRLARPDEAKSVVAKGVRQIPKSANKIRALRMALDEIPDSVRLWKALVEISS----EEEA 381
RL + + Q+ ++ + R+ + P + LW V + + A
Sbjct: 750 SRLE----------EKIGQLTRTRAILEKSRL---KNPKNPGLWLESVRLEYRAGLKNIA 796
Query: 382 RILLHRAVECCPLDVELWLALVRLETYGVARSVLNKARKKLPKERAIWIAAAKL 435
L+ +A++ CP LW + LE R+ A KK + + +A AKL
Sbjct: 797 NTLMAKALQECPNSGILWSEAIFLEARPQRRTKSVDALKKCEHDPHVLLAVAKL 850
>sp|Q12381|PRP1_SCHPO Pre-mRNA-splicing factor prp1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=prp1 PE=1 SV=1
Length = 906
Score = 439 bits (1130), Expect = e-122, Method: Compositional matrix adjust.
Identities = 252/618 (40%), Positives = 366/618 (59%), Gaps = 33/618 (5%)
Query: 11 DFLNSKPPANYIAGAGRGASSFTTRSDIGRTRTAPPSTIIGLPRPKPRDDDGEDDNDDDG 70
DFLN +PP NY+AG GRGA+ FTTRSD+G + P I + E + ++D
Sbjct: 7 DFLNMQPPPNYVAGLGRGATGFTTRSDLGPAQELPSQESI---KAAIEQRKSEIEEEEDI 63
Query: 71 NNGYQQNFDHFEGNDAGLFVNLEYDDEDKEADAVWESIDKLMDSRRKSRREARLEEEIKN 130
+ YQ N+ LF YD ED+EAD +++S+++ + RRKS+RE + + + +
Sbjct: 64 DPRYQD-----PDNEVALFATAPYDHEDEEADKIYQSVEEHLSKRRKSQREKQEQLQKEK 118
Query: 131 YRYKNPTIREEFADLKGKLSTVKAKEWERIPEIGDYSR--RNKRKRFDSFVPVPDSLLQK 188
Y +NP + +FADLK LST+ ++W IPE GD +R R K+ R + F D +L
Sbjct: 119 YEKENPKVSSQFADLKRGLSTLTDEDWNNIPEPGDLTRKKRTKQPRRERFYATSDFVLAS 178
Query: 189 ARQEQQHVIALDPSSRAAGGAES-----VVTDLTAVGEGRGKILTLKLDGISDSVTGLTV 243
AR E Q + ++A G E+ T+ +G R K+L +KL S ++T +
Sbjct: 179 ARNENQAISNFAVDTQA--GTETPDMNGTKTNFVEIGAARDKVLGIKLAQASSNLTSPST 236
Query: 244 FDPSGYLTRMNDLKITTNSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAA 303
DP GYLT +N + ++L DI KARK++++V + +PK GW+ AARLEE+AN+ +
Sbjct: 237 IDPKGYLTSLNSMVPKNANDLGDIRKARKLLQSVIETNPKHASGWVAAARLEEVANKLSQ 296
Query: 304 ARKLITKGCNMCPKNEDVWLEACRLARPDEAKSVVAKGVRQIPKSA-------------- 349
A+ LI KGC C ++EDVWLEA RL EAK ++A V+++PKS
Sbjct: 297 AQSLILKGCENCSRSEDVWLEAIRLHPAAEAKVIIANAVKKLPKSVTLWLEAEKLENQAQ 356
Query: 350 NKIRALRMALDEIPDSVRLWKALVEISSE-EEARILLHRAVECCPLDVELWLALVRLETY 408
+K R ++ AL+ P SV LWK V + E + ARILL RAVE P+ ++LWLAL RLETY
Sbjct: 357 HKKRIIKKALEFNPTSVSLWKEAVNLEEEVDNARILLARAVELIPMSIDLWLALARLETY 416
Query: 409 GVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTW 467
A+ VLNKAR+ + +WIAAA+LE GN S V KI+ RG+ LQ ++ RD W
Sbjct: 417 ENAKKVLNKARQTIRTSHEVWIAAARLEEQQGNVSRVEKIMARGVSELQATGGMLQRDQW 476
Query: 468 MKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPA 527
+ EAE + G+V+T AII + +G+DEED+ TW+ D + R I+ ARA+F+ +
Sbjct: 477 LSEAEKCETEGAVITAQAIINTCLGVGLDEEDQFDTWLDDAQSFIARKCIDCARAVFAFS 536
Query: 528 CTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPA 587
V+ + +WL+A +LEK YG ES+ ++L KAV CP+AE+LWL+ AKE+ D+
Sbjct: 537 LRVYPKSEKLWLRAVELEKLYGTTESVCSILEKAVESCPKAEILWLLYAKERKNVNDIAG 596
Query: 588 TRDILQEAYAAIPNSEEI 605
R+IL A+ NSEEI
Sbjct: 597 ARNILGRAFEYNSNSEEI 614
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 101/225 (44%), Gaps = 28/225 (12%)
Query: 273 IVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRL---- 328
I+ ++ PK + W+ A+ + N+ A AR ++ + +E++WL A R+
Sbjct: 566 ILEKAVESCPKAEILWLLYAKERKNVNDIAGARNILGRAFEYNSNSEEIWLAAVRIEFVN 625
Query: 329 -----ARPDEAKSVVAKGVRQI-PKSAN-------KIRALRM---ALDEIPDSVRLWKAL 372
AR A++ + G +I KS + K RAL++ AL P +L+
Sbjct: 626 NENERARKLLARARIESGTERIWTKSISLERILDEKDRALQLLENALKIYPHYDKLYMMK 685
Query: 373 VEISSEEE----ARILLHRAVECCPLDVELWLALVRLE---TYGVARSVLNKARKKLPKE 425
+I ++E AR + CP + LWL L +LE + AR V ++A+ K PK
Sbjct: 686 GQIFEDKEQIELARDAYLAGTKVCPYSIPLWLLLAKLEEKQSVIRARVVFDRAKVKNPKN 745
Query: 426 RAIWIAAAKLEAN-GNTSMVGKIIERGIRALQGEEVVIDRDTWMK 469
+W+ K+E GN S V + + ++ ++ W++
Sbjct: 746 EFLWLELIKMELRAGNISQVRAALAKALQECPSSGLLWTEAIWLE 790
Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 76/339 (22%), Positives = 135/339 (39%), Gaps = 48/339 (14%)
Query: 271 RKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLAR 330
++I++ + +P W +A LEE E AR L+ + + P + D+WL RL
Sbjct: 359 KRIIKKALEFNPTSVSLWKEAVNLEE---EVDNARILLARAVELIPMSIDLWLALARLET 415
Query: 331 PDEAKSVVAKGVRQIPKSANKIRALRMALDEIPDSVR----------------------- 367
+ AK V+ K RQ ++++++ L+E +V
Sbjct: 416 YENAKKVLNKA-RQTIRTSHEVWIAAARLEEQQGNVSRVEKIMARGVSELQATGGMLQRD 474
Query: 368 LWKALVEISSEEEARILLHRAVECC---PLDVE----LWL----ALVRLETYGVARSVLN 416
W + E E A I + C LD E WL + + + AR+V
Sbjct: 475 QWLSEAEKCETEGAVITAQAIINTCLGVGLDEEDQFDTWLDDAQSFIARKCIDCARAVFA 534
Query: 417 KARKKLPKERAIWIAAAKLEA-NGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVAD 475
+ + PK +W+ A +LE G T V I+E+ + + E++ W+ A+
Sbjct: 535 FSLRVYPKSEKLWLRAVELEKLYGTTESVCSILEKAVESCPKAEIL-----WLLYAKERK 589
Query: 476 RAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKK 535
+ I+ E + E+ W+A V E AR + + A T++
Sbjct: 590 NVNDIAGARNILGRAFEYNSNSEE---IWLAAVRIEFVNNENERARKLLARARIESGTER 646
Query: 536 NIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLM 574
IW K+ LE+ ++ + LL A+ P + L++M
Sbjct: 647 -IWTKSISLERILDEKDRALQLLENALKIYPHYDKLYMM 684
Score = 52.8 bits (125), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 74/292 (25%), Positives = 119/292 (40%), Gaps = 32/292 (10%)
Query: 320 DVWLEACRLARPDEAKSVVAKGVRQIPKSANKIRALRMALDEIPDSVRLWKALVEI---- 375
D WL D+A+S +A R+ A + A + + P S +LW VE+
Sbjct: 511 DTWL--------DDAQSFIA---RKCIDCARAVFAFSLRV--YPKSEKLWLRAVELEKLY 557
Query: 376 SSEEEARILLHRAVECCPLDVELWLALVR----LETYGVARSVLNKARKKLPKERAIWIA 431
+ E +L +AVE CP LWL + + AR++L +A + IW+A
Sbjct: 558 GTTESVCSILEKAVESCPKAEILWLLYAKERKNVNDIAGARNILGRAFEYNSNSEEIWLA 617
Query: 432 AAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNT 490
A ++E N K++ R R G E + W K + + ++ N
Sbjct: 618 AVRIEFVNNENERARKLLARA-RIESGTERI-----WTKSISLERILDEKDRALQLLENA 671
Query: 491 IEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGC 550
++I DK + E K++ IE AR + V +WL A+LE+
Sbjct: 672 LKI-YPHYDKLYMMKGQIFEDKEQ--IELARDAYLAGTKVCPYSIPLWLLLAKLEEKQSV 728
Query: 551 RESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNS 602
+ + R V P+ E LWL K + AG++ R L +A P+S
Sbjct: 729 IRARVVFDRAKVKN-PKNEFLWLELIKMELRAGNISQVRAALAKALQECPSS 779
Score = 33.1 bits (74), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 4/110 (3%)
Query: 263 ELRDILKARKIV-RAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDV 321
E + +++AR + RA KN PK W++ ++E A + R + K CP + +
Sbjct: 724 EKQSVIRARVVFDRAKVKN-PKNEFLWLELIKMELRAGNISQVRAALAKALQECPSSGLL 782
Query: 322 WLEACRLARPDEAKSVVAKGVRQIPKSANKIRAL-RMA-LDEIPDSVRLW 369
W EA L + K+ +R+ +A+ + + RM L++ D R W
Sbjct: 783 WTEAIWLEPRAQRKTRATDALRKCEGNAHLLCTIARMLWLEKKADKARSW 832
>sp|P19735|PRP6_YEAST Pre-mRNA-splicing factor 6 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PRP6 PE=1 SV=1
Length = 899
Score = 184 bits (466), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 151/524 (28%), Positives = 235/524 (44%), Gaps = 96/524 (18%)
Query: 9 RLDFLNSKPPANYIAGAGRGASSFTTRSDIGRTRTAPPSTIIGLPRPKPRDDDGEDDNDD 68
R FL+ +PPA Y+ G GRGA+ F+T+ ++ NDD
Sbjct: 3 RPSFLDQEPPAGYVPGIGRGATGFSTKE----------KQVVS--------------NDD 38
Query: 69 DGN---NGYQQNFD-HFEGNDAGLFVNLEYDDEDKEADAVWESIDKLMDSRRKSRREARL 124
G Y++N + H + DDED EA V+++++ + ++K R
Sbjct: 39 KGRRIPKRYRENLNNHLQSQPK--------DDEDDEAANVFKTLELKLAQKKKKRAN--- 87
Query: 125 EEEIKNYRYKNPTIREEFADLKGKLSTVKAKEWERIPEIGDYSRRNKRKRFDSFVPVPDS 184
E+ + + ++ +FADLK L+ V EW IP+ D++RRNKR R
Sbjct: 88 -EKDDDNSVDSSNVKRQFADLKESLAAVTESEWMDIPDATDFTRRNKRNRI--------- 137
Query: 185 LLQKARQEQ-QHVIALDPSSRAAGGAESVVTDLTAVGEGRGKILTLKLDG-----ISDSV 238
QEQ P S G DL + E R K+L ++D ++
Sbjct: 138 ------QEQLNRKTYAAPDSLIPGNV-----DLNKLTEEREKLLQSQIDENLAQLTKNAS 186
Query: 239 TGLTVFDPSG------YLTRMNDLKITTNSE--LRDILKARKIVRAVTKNSPKKPLGWIQ 290
+ V P+ YL + + ++ + S+ L D+ K R I+++ K P P GWI
Sbjct: 187 NPIQVNKPNAATDALSYLKDLENDRVNSLSDATLEDLQKMRTILKSYRKADPTNPQGWIA 246
Query: 291 AARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLARPD--EAKSVVAKGVRQIPKS 348
+ARLEE A + + A+K+I GC CP++ D+WLE RL D K++VA + P S
Sbjct: 247 SARLEEKARKFSVAKKIIENGCQECPRSSDIWLENIRLHESDVHYCKTLVATAINFNPTS 306
Query: 349 --------------ANKIRALRMALDEIPDSVRLWKALVEISSEEEARI-LLHRAVECCP 393
NK R +R AL EIP LWK V +++ I +L +A + P
Sbjct: 307 PLLWFKAIDLESTTVNKYRVVRKALQEIPRDEGLWKLAVSFEADKAQVIKMLEKATQFIP 366
Query: 394 LDVELWLALVRLETYGVARSVLNKARKKLPKERAIWIAAAKLEANGNTSM----VGKIIE 449
++L A L++Y A+ LN RK LP+E IWI + LE N + + +++
Sbjct: 367 QSMDLLTAYTNLQSYHNAKMTLNSFRKILPQEPEIWIISTLLEERNNPDIPVDKLVSLLK 426
Query: 450 RGIRALQGEEVVIDRDTWMKEAE-VADRAGSVVTCVAIITNTIE 492
G+ L W+K AE + D S +TC AI+ +E
Sbjct: 427 EGLLELSKNGYKATLSAWLKRAEALNDAPNSNLTCQAIVYAILE 470
Score = 40.4 bits (93), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 54/111 (48%), Gaps = 10/111 (9%)
Query: 362 IPDSVRLWKAL-----VEISSEEEARILLHRAVECCPLDVELWLALVRLE----TYGVAR 412
+P+ LW +L +++ + AR +L R + P DV ++A +++E A
Sbjct: 698 VPNCPLLWVSLSKIDEIDLKNPVRARSILDRGLLKNPDDVLFYIAKIQMEIRLGNLDQAE 757
Query: 413 SVLNKARKKLPKERAIWIAAAKLEANGNTSMVGK-IIERGIRALQGEEVVI 462
++ +A +K P +W+ KL +GN S + K I + +R Q + V+
Sbjct: 758 LLVTQALQKFPSNALLWVEQIKLFKHGNKSSLKKTIFQDALRRTQNDHRVL 808
>sp|Q4WT84|CLF1_ASPFU Pre-mRNA-splicing factor clf1 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=clf1 PE=3
SV=1
Length = 676
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 78/266 (29%), Positives = 108/266 (40%), Gaps = 26/266 (9%)
Query: 358 ALDEIPDSVRLWKALVEISSEE----EARILLHRAVECCPLDVELWLALVRLE-TYGV-- 410
ALD P SV LW +E AR LL RAV P + W V +E T G
Sbjct: 98 ALDVNPTSVVLWIRYIESEMRNRNINHARNLLDRAVTILPRVDKFWYKYVYMEETLGNIQ 157
Query: 411 -ARSVLNKARKKLPKERAIWIAAAKLEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMK 469
R V + P E A W A KLE N + I + + E W+K
Sbjct: 158 GTRQVFERWMSWEPDEGA-WSAYIKLEKRYNEFERARAIFQRFTIVHPEP-----RNWIK 211
Query: 470 EAEVADRAGSVVTCVAIITNTIE-IGVDEEDKKRTWVADVEECKKRGSIETARAIFSPAC 528
A + G+ + IE +G D D+K ++A + K E ARAI+ A
Sbjct: 212 WARFEEEYGTSDLVREVYGMAIETLGEDFMDEK-LFIAYAKFEAKLKEYERARAIYKYAL 270
Query: 529 TVFLTKKNIWLKAAQ--LEKSYGCRESL--IALLRKAVTY------CPQAEVLWLMGAKE 578
K + L A EK +G RE + + L ++ V Y P+ +W A+
Sbjct: 271 DRLPRSKAMALHKAYTTFEKQFGDREGVEDVILSKRRVQYEEQLKENPRNYDVWFDFARL 330
Query: 579 KWLAGDVPATRDILQEAYAAIPNSEE 604
+ +GD RDI + A A IP S+E
Sbjct: 331 EETSGDPDRVRDIYERAIAQIPPSQE 356
>sp|Q7SGD2|CLF1_NEUCR Pre-mRNA-splicing factor clf-1 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=clf-1 PE=3 SV=1
Length = 695
Score = 56.6 bits (135), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 116/270 (42%), Gaps = 30/270 (11%)
Query: 358 ALDEIPDSVRLW----KALVEISSEEEARILLHRAVECCPLDVELWLA-LVRLETYG--- 409
ALD P++ +LW +A ++ + AR LL RAV P LW L +E G
Sbjct: 98 ALDVHPNNTQLWIRYVQAEIKNRNINHARNLLDRAVTRLPRVTSLWYQYLYVMEMLGDIP 157
Query: 410 VARSVLNKARKKLPKERAIWIAAAKLEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMK 469
R V ++ K P E+A W A +LE + I R A+ E TW+K
Sbjct: 158 GTRQVFDRWMKWQPDEQA-WSAYIRLEKRYGEFDRAREIFRAFTAVHPEP-----RTWLK 211
Query: 470 EAEVADRAGSVVTCVAIITNTIE-----IGVDEEDKKRTWVADVEECKKRGSIETARAIF 524
A+ + G+ T + I+ +G D D+ R ++A + E ARAI+
Sbjct: 212 WAKFEEEYGTSDTVREVFQTAIQTIAETLGDDAVDE-RIFIAFARYEARLREYERARAIY 270
Query: 525 SPACTVFLTKKNIWLKA--AQLEKSYGCRESL--IALLRKAVTYCPQAEV------LWLM 574
K++ L A EK +G +E + + L ++ Y Q + +W
Sbjct: 271 KFGLDNLPRSKSMTLHAHYTTFEKQFGDKEGVEDVILTKRRRLYEEQVKENAKNYDVWFD 330
Query: 575 GAKEKWLAGDVPATRDILQEAYAAIPNSEE 604
A+ + GDV TR++ + A A +P ++E
Sbjct: 331 FARLEESGGDVDRTREVYERAIAQVPPTQE 360
Score = 37.0 bits (84), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 31/73 (42%)
Query: 520 ARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEK 579
AR++F A V +W++ Q E LL +AVT P+ LW
Sbjct: 91 ARSVFERALDVHPNNTQLWIRYVQAEIKNRNINHARNLLDRAVTRLPRVTSLWYQYLYVM 150
Query: 580 WLAGDVPATRDIL 592
+ GD+P TR +
Sbjct: 151 EMLGDIPGTRQVF 163
>sp|Q5BDX1|CLF1_EMENI Pre-mRNA-splicing factor clf1 OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=clf1
PE=3 SV=2
Length = 673
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 77/266 (28%), Positives = 108/266 (40%), Gaps = 26/266 (9%)
Query: 358 ALDEIPDSVRLWKALVEISSEE----EARILLHRAVECCPLDVELWLALVRLE-TYGV-- 410
ALD SV LW +E AR LL RAV P +LW V +E T G
Sbjct: 98 ALDVDSTSVPLWIRYIESEMRNRNINHARNLLDRAVTILPRVDKLWYKYVYMEETLGNIP 157
Query: 411 -ARSVLNKARKKLPKERAIWIAAAKLEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMK 469
R V + P E A W A KLE N + I + + E W+K
Sbjct: 158 GTRQVFERWMSWEPDEGA-WSAYIKLEKRYNEFERARAIFQRFTIVHPEP-----RNWIK 211
Query: 470 EAEVADRAGSVVTCVAIITNTIE-IGVDEEDKKRTWVADVEECKKRGSIETARAIFSPAC 528
A + G+ + +E +G D D+K ++A K E ARAI+ A
Sbjct: 212 WARFEEEYGTSDLVREVYGLAVETLGEDFMDEK-LFIAYARFETKLKEYERARAIYKYAL 270
Query: 529 TVFLTKKNIWLKAAQ--LEKSYGCRESL--IALLRKAVTYCPQAEV------LWLMGAKE 578
K+I L A EK +G RE + + L ++ V Y Q + +W A+
Sbjct: 271 DRLPRSKSITLHKAYTTFEKQFGDREGVENVILAKRRVQYEEQLKENLRNYDVWFDFARL 330
Query: 579 KWLAGDVPATRDILQEAYAAIPNSEE 604
+ +GD RD+ + A A IP S+E
Sbjct: 331 EEQSGDPERVRDVYERAIAQIPPSQE 356
Score = 34.3 bits (77), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%)
Query: 520 ARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEK 579
AR+IF A V T +W++ + E LL +AVT P+ + LW +
Sbjct: 91 ARSIFERALDVDSTSVPLWIRYIESEMRNRNINHARNLLDRAVTILPRVDKLWYKYVYME 150
Query: 580 WLAGDVPATRDILQEAYAAIPN 601
G++P TR + + + P+
Sbjct: 151 ETLGNIPGTRQVFERWMSWEPD 172
>sp|A7MB10|RRP5_BOVIN Protein RRP5 homolog OS=Bos taurus GN=PDCD11 PE=2 SV=1
Length = 1874
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 102/224 (45%), Gaps = 18/224 (8%)
Query: 353 RALR-MALDEIPDSVRLWKALVEI----SSEEEARILLHRAVECC-PLDVELWLA--LVR 404
RAL+ ++ E + + +W AL+ + S+E + RAV+ PL V L LA +
Sbjct: 1647 RALKTISFREEQEKLNVWVALLNLENMYGSQESLTKVFERAVQYNEPLKVFLHLADIYTK 1706
Query: 405 LETYGVARSVLNKARKKLPKERAIWIA-AAKLEANGNTSMVGKIIERGIRALQGEEVVID 463
E + A + N+ K+ +E+A+W+ A L G ++++R + L +E V
Sbjct: 1707 SEKFQEAGELYNRMLKRFRQEKAVWVKYGAFLLRRGKAEASHRVMQRALECLPKKEHV-- 1764
Query: 464 RDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAI 523
D K A++ + G AI +T+ I D W ++ K GS + ARAI
Sbjct: 1765 -DVIAKFAQLEFQLGDAERARAIFESTLSIYPKRTD---VWSVYIDMIIKHGSQKEARAI 1820
Query: 524 FSPACTVFLTKKNI---WLKAAQLEKSYGCRESLIALLRKAVTY 564
F + L K + + + EK +G + + A+ KA+ Y
Sbjct: 1821 FERVIHLSLAPKRMKFFFKRYLDYEKQHGSEKDVQAVKAKALEY 1864
>sp|Q6NS46|RRP5_MOUSE Protein RRP5 homolog OS=Mus musculus GN=Pdcd11 PE=2 SV=2
Length = 1862
Score = 52.8 bits (125), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 99/224 (44%), Gaps = 18/224 (8%)
Query: 353 RALR-MALDEIPDSVRLWKALVEI----SSEEEARILLHRAVECC-PLDVELWLA--LVR 404
RAL+ ++ E + + +W AL+ + S+E + RAV+ PL V L LA +
Sbjct: 1635 RALKTISFREEQEKLNVWVALLNLENMYGSQESLTKVFERAVQYNEPLKVFLHLADIYTK 1694
Query: 405 LETYGVARSVLNKARKKLPKERAIWIA-AAKLEANGNTSMVGKIIERGIRALQGEEVVID 463
E Y A + N+ K+ +E+A+WI A + ++++R + L +E V
Sbjct: 1695 SEKYKEAGELYNRMLKRFRQEKAVWIKYGAFVLGRSQAGASHRVLQRALECLPAKEHV-- 1752
Query: 464 RDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAI 523
D +K A++ + G V AI NT+ D W ++ K GS R I
Sbjct: 1753 -DVIVKFAQLEFQLGDVERAKAIFENTLSTYPKRTD---VWSVYIDMTIKHGSQTAVRDI 1808
Query: 524 FSPACTVFLTKKNI---WLKAAQLEKSYGCRESLIALLRKAVTY 564
F + L K + + + EK +G + + A+ KA+ Y
Sbjct: 1809 FERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEY 1852
>sp|Q54VF4|Y8236_DICDI TPR-containing protein DDB_G0280363 OS=Dictyostelium discoideum
GN=DDB_G0280363 PE=4 SV=2
Length = 1304
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/260 (22%), Positives = 105/260 (40%), Gaps = 49/260 (18%)
Query: 251 TRMNDLKITTNSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITK 310
R N+LK+ ARK R VT P GW++ A++EE +K++
Sbjct: 780 NRQNNLKL-----------ARKFYRKVTSTQPYISQGWLEYAKMEEDYGRLEKCQKILQL 828
Query: 311 GCNMCPKNEDVWLEACRLARPDEAKSVVAKGVRQIPKSANKIRALRMALDEIPDS--VRL 368
G CP NE S++ KG+R K N + R L ++ D +
Sbjct: 829 GLKHCPFNE----------------SLLIKGIRHEEKMDN-LEGARALLSQLRDQSIYKT 871
Query: 369 WKALVEISSEEEAR------------ILLHRAVECCPLDVELWLALVRLETYGVARSVLN 416
W+A++E EAR L+ P+ E + R E Y A +++
Sbjct: 872 WRAVME-GGLLEARAGNIDVARKIFKYLMKHVPWYGPIYQEAYKLEERCEEYERAINIVE 930
Query: 417 KARKKLPKERAIWIAAAKL---EANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEV 473
K + PK +W +A +L ++G +ER +A+ E + + + A++
Sbjct: 931 KGLFEDPKYGPLWFSALRLYEKTSHGFLQSTRNTVERARQAVSRE---VTWKIYFEAAQI 987
Query: 474 ADRAGSVVTCVAIITNTIEI 493
+R+ ++ A ++E+
Sbjct: 988 EERSKNLTLSRAAYVKSVEL 1007
Score = 38.5 bits (88), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 75/187 (40%), Gaps = 36/187 (19%)
Query: 288 WIQAARLEELANEEAAARKLITKGCNMCPKNE--DVWLEACR---------LAR------ 330
+ +AA++EE + +R K +CP+N VWL R +AR
Sbjct: 981 YFEAAQIEERSKNLTLSRAAYVKSVELCPENLLWKVWLGGSRTELNADNICIARKLVFRA 1040
Query: 331 ----PDEAKSVVAKGVRQIPKSANKIRALRMALDEIPDSVRL-WKALVEI------SSEE 379
P + +S+V ++ + A I R L RL WK +E ++
Sbjct: 1041 LEEVPSKLRSLVLLEYSRLEEYAGNINKSRRILKMAHVEARLDWKVFLESVLLEMRANNY 1100
Query: 380 EARILLHRAVECCPLDV---ELWLALVRLETYGVARSVLN---KARKKLPKERAIWIAAA 433
EA I A E + LW AL++L +S LN KA + +PK +W A
Sbjct: 1101 EAAI--KEAKESLKIHSGAGRLWAALIQLNQLKGVKSQLNVFKKALQFVPKSGEVWCEGA 1158
Query: 434 KLEANGN 440
++ N N
Sbjct: 1159 RIALNNN 1165
Score = 33.5 bits (75), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/93 (19%), Positives = 43/93 (46%)
Query: 502 RTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKA 561
R ++ + ++ +++ AR + + WL+ A++E+ YG E +L+
Sbjct: 770 RVYLELADLANRQNNLKLARKFYRKVTSTQPYISQGWLEYAKMEEDYGRLEKCQKILQLG 829
Query: 562 VTYCPQAEVLWLMGAKEKWLAGDVPATRDILQE 594
+ +CP E L + G + + ++ R +L +
Sbjct: 830 LKHCPFNESLLIKGIRHEEKMDNLEGARALLSQ 862
>sp|Q5K654|CLF1_PARBR Pre-mRNA-splicing factor CLF1 OS=Paracoccidioides brasiliensis
GN=CLF1 PE=3 SV=1
Length = 677
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 108/267 (40%), Gaps = 28/267 (10%)
Query: 358 ALDEIPDSVRLWKALVEISSE----EEARILLHRAVECCPLDVELWLALVRLE----TYG 409
ALD P +V LW +E + AR LL RAV +LW V +E
Sbjct: 98 ALDVDPTAVVLWIRYIEAEMKTRNINHARNLLDRAVTIYSRVDKLWYKYVYMEEMLGNIP 157
Query: 410 VARSVLNKARKKLPKERAIWIAAAKLEANGN-TSMVGKIIERGIRALQGEEVVIDRDTWM 468
R V + P E A W A KLE N V I ER V + W+
Sbjct: 158 GTRQVFERWMSWEPDEGA-WGAYIKLEKRYNEFDRVRAIFERFT------VVHPEPKNWI 210
Query: 469 KEAEVADRAGSVVTCVAIITNTIE-IGVDEEDKKRTWVADVEECKKRGSIETARAIFSPA 527
K A + G+ + IE +G D D+K ++A K E ARAI+ A
Sbjct: 211 KWARFEEEYGTSDMVREVYGLAIETLGEDFMDEK-LFIAYARYEAKLKEFERARAIYKYA 269
Query: 528 CTVFLTKKNIWLKAAQ--LEKSYGCRESL--IALLRKAVTY------CPQAEVLWLMGAK 577
K++ L A EK +G RE + + L ++ V Y P+ +W +
Sbjct: 270 LDRLPRAKSVALHKAYTTFEKQFGDREGVEDVILSKRRVQYEEQIKENPKNYDIWFDFVR 329
Query: 578 EKWLAGDVPATRDILQEAYAAIPNSEE 604
+ +GDV RD+ + A A +P S+E
Sbjct: 330 LEESSGDVERVRDVYERAIAQMPPSQE 356
>sp|Q14690|RRP5_HUMAN Protein RRP5 homolog OS=Homo sapiens GN=PDCD11 PE=1 SV=3
Length = 1871
Score = 49.7 bits (117), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 99/224 (44%), Gaps = 18/224 (8%)
Query: 353 RALR-MALDEIPDSVRLWKALVEI----SSEEEARILLHRAVECC-PLDVELWLA--LVR 404
RAL+ ++ E + + +W AL+ + S+E + RAV+ PL V L LA +
Sbjct: 1644 RALKTISFREEQEKLNVWVALLNLENMYGSQESLTKVFERAVQYNEPLKVFLHLADIYAK 1703
Query: 405 LETYGVARSVLNKARKKLPKERAIWIA-AAKLEANGNTSMVGKIIERGIRALQGEEVVID 463
E + A + N+ K+ +E+A+WI A L + ++++R + L +E V
Sbjct: 1704 SEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRSQAAASHRVLQRALECLPSKEHV-- 1761
Query: 464 RDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAI 523
D K A++ + G AI NT+ D W ++ K GS + R I
Sbjct: 1762 -DVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTD---VWSVYIDMTIKHGSQKDVRDI 1817
Query: 524 FSPACTVFLTKKNI---WLKAAQLEKSYGCRESLIALLRKAVTY 564
F + L K + + + EK +G + + A+ KA+ Y
Sbjct: 1818 FERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEY 1861
Score = 32.7 bits (73), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 13/84 (15%)
Query: 517 IETARAIFSPACTVF-----LTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVL 571
IE ARA+ A K N+W+ LE YG +ESL + +AV Y +V
Sbjct: 1635 IEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTKVFERAVQYNEPLKVF 1694
Query: 572 WLMGAKEKWLAGDVPATRDILQEA 595
+ D+ A + QEA
Sbjct: 1695 LHL--------ADIYAKSEKFQEA 1710
>sp|Q527H0|CLF1_MAGO7 Pre-mRNA-splicing factor CLF1 OS=Magnaporthe oryzae (strain 70-15 /
ATCC MYA-4617 / FGSC 8958) GN=CLF1 PE=3 SV=1
Length = 691
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 83/336 (24%), Positives = 136/336 (40%), Gaps = 50/336 (14%)
Query: 294 LEELANEEAAARKLITKGCNMCPKNEDVWLEACR--LARPDEAKSVVAKGVRQIPKSANK 351
LEEL + RK C N WL+ + L + + A+S + V +
Sbjct: 47 LEELHEYQGRKRKEFESYCQRSGFNLKNWLQYAQWELEQKEYARS---RSVFE------- 96
Query: 352 IRALRMALDEIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALVRLETY--- 408
RAL + +++ +R +A ++ + AR LL RAV P +LW V +E
Sbjct: 97 -RALNLHANKVTLWIRYVEAELKSRNINFARNLLDRAVTHLPRVDKLWYKYVWVEEMLGN 155
Query: 409 --GVARSVLNKARKKLPKERAIWIAAAKLEAN-GNTSMVGKIIERGIRALQGEEVVIDRD 465
GV R V + + P E A W A KLE G +I R V +
Sbjct: 156 IPGV-RQVFERWMEWQPDE-AAWSAFIKLEQRYGEYDRAREIFTRFTM------VHPEPR 207
Query: 466 TWMKEAEVADRAGSVVTCVAIITNTIE----IGVDEEDKKRTWVADVEECKKRGSIETAR 521
W+K ++ + G+ + IE G DE ++R ++A K ++ AR
Sbjct: 208 NWIKWSKFEEEYGTSDRVREVFERAIEELSKYG-DEFVEERLFIAYARYEAKLHDLDRAR 266
Query: 522 AIFS------PACTVFLTKKNIWLKAAQLEKSYGCRESL--IALLRKAVTY------CPQ 567
AI+ P L K EK YG RE + + L ++ Y P+
Sbjct: 267 AIYKFGLENLPRSKAMLLHKEY----TTFEKQYGDREGVEDVVLSKRRRHYEDLVRENPK 322
Query: 568 AEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSE 603
+W A+ + +GD+ TR++ ++A A +P ++
Sbjct: 323 NYDVWFDYARLEEASGDIDRTREVYEKAIAQVPPTQ 358
Score = 33.1 bits (74), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 71/188 (37%), Gaps = 32/188 (17%)
Query: 269 KARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNE--------- 319
K R+ + + +PK W ARLEE + + R++ K P +
Sbjct: 308 KRRRHYEDLVRENPKNYDVWFDYARLEEASGDIDRTREVYEKAIAQVPPTQAKRHWRRYI 367
Query: 320 DVWL-----EACRLARPDEAKSVVAKGVRQIPKSANKIRALRMALDEIPDSVRLWKALVE 374
+W+ E P+ A+ V ++ IP R A V + KA E
Sbjct: 368 YLWIFFALWEETEAKNPERARQVYDTCLKLIPH-----RTFTFA------KVWMHKAHFE 416
Query: 375 ISSEE--EARILLHRAVECCPLDVELWLALVRLET----YGVARSVLNKARKKLPKERAI 428
I + AR L RA+ CP D L+ + +E +G R + K P +
Sbjct: 417 IRQGDLAAARKTLGRAIGMCPKD-RLFKGYIEMEQKLYEFGRCRILYEKHIAYNPANCST 475
Query: 429 WIAAAKLE 436
W+ A+LE
Sbjct: 476 WVKWAELE 483
>sp|Q54XP4|CRNL1_DICDI Crooked neck-like protein 1 OS=Dictyostelium discoideum GN=crnkl1
PE=3 SV=1
Length = 705
Score = 42.7 bits (99), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 101/242 (41%), Gaps = 28/242 (11%)
Query: 381 ARILLHRAVECCPLDVELWLALVRLE----TYGVARSVLNKARKKLPKERAIWIAAAKLE 436
AR + RAV P +LW +E Y AR++ + + P+ +A W + K E
Sbjct: 128 ARNIWDRAVCLLPRVSQLWFKYTFMEDMLGNYPAARAIFERWMQWKPEPQA-WNSYLKFE 186
Query: 437 AN----GNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIE 492
NT + I E+ I V TW+K + +R G++ I IE
Sbjct: 187 QRLKLFENTRL---IFEKYIL------VHPYIKTWIKYTKFEERLGNIENARTIFQRAIE 237
Query: 493 IGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTK--KNIWLKAAQLEKSYGC 550
++ + ++ ++A + +K IE AR I+ A K+++ EK +G
Sbjct: 238 FLGEDGNDEQLFIAFAKFEEKYKEIERARVIYKYAIDHVPKSRAKDLFDTFTNFEKQHGD 297
Query: 551 RESL--IALLRKAVTYCPQAEV------LWLMGAKEKWLAGDVPATRDILQEAYAAIPNS 602
R + + L +K Y + + +W K + + G++ TR+I + + +P +
Sbjct: 298 RIGIEDVVLGKKRFQYEEEIKKNSKNYDIWFDYLKMEEINGEIEKTREIYERSIGNLPPT 357
Query: 603 EE 604
E
Sbjct: 358 NE 359
>sp|P16522|CDC23_YEAST Anaphase-promoting complex subunit CDC23 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=CDC23 PE=1
SV=1
Length = 626
Score = 42.7 bits (99), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 76/198 (38%), Gaps = 23/198 (11%)
Query: 330 RPDEAKSVVAKGVRQIPKSANKIRALRMALDEIPDSVRLWKAL----VEISSEEEARILL 385
RP E ++A + I R AL + W + VE+S+ A
Sbjct: 396 RP-ETCCIIANYYSARQEHEKSIMYFRRALTLDKKTTNAWTLMGHEFVELSNSHAAIECY 454
Query: 386 HRAVECCPLDVELWLAL----VRLETYGVARSVLNKARKKLPKERAIW-IAAAKLEANGN 440
RAV+ CP D + W L L+ + + KA P +R IW + GN
Sbjct: 455 RRAVDICPRDFKAWFGLGQAYALLDMHLYSLYYFQKACTLKPWDRRIWQVLGECYSKTGN 514
Query: 441 TSMVGKIIERGIRALQGEEVVIDRDT--WMKEAEVADRAGSVVTCVAIITNTIE------ 492
K +R I+A Q +D++T + + A++ + + C + ++
Sbjct: 515 KVEAIKCYKRSIKASQ----TVDQNTSIYYRLAQLYEELEDLQECKKFMMKCVDVEELLE 570
Query: 493 -IGVDEEDKKRTWVADVE 509
I DE K R W+A E
Sbjct: 571 GIVTDETVKARLWLAIFE 588
>sp|Q9HF03|CLF1_CRYNH Pre-mRNA-splicing factor CLF1 OS=Cryptococcus neoformans var.
grubii serotype A (strain H99 / ATCC 208821 / CBS 10515
/ FGSC 9487) GN=CLF1 PE=3 SV=1
Length = 724
Score = 39.7 bits (91), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 71/177 (40%), Gaps = 19/177 (10%)
Query: 364 DSVRLWKALVEISSE----EEARILLHRAVECCPLDVELWLALVRLE----TYGVARSVL 415
DS+ W + + E +R + RA++ P V+LW+ +E AR++
Sbjct: 73 DSILAWTKYAQWEASQNEYERSRSVFERALDVDPRSVDLWIKYTDMELKARNINHARNLF 132
Query: 416 NKARKKLPKERAIWIAAAKLEANG-NTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVA 474
++A LP+ A+W LE N S +I ER ++ ++ W ++
Sbjct: 133 DRAITLLPRVDALWYKYVYLEELLLNVSGARQIFERWMQWEPNDK------AWQSYIKLE 186
Query: 475 DRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVF 531
+R + AI I + WVA + + RG + AR +F A F
Sbjct: 187 ERYNELDRASAIYERWIAC----RPIPKNWVAWAKFEEDRGQPDKAREVFQTALEFF 239
Score = 35.8 bits (81), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 103/242 (42%), Gaps = 63/242 (26%)
Query: 265 RDILKARKIVRAVTKNSPKKPLG----WIQAARLEELANEEAAARKLITKGCNMCPKNED 320
+D +AR + +A K P K W+ A E + +AARK++ G MCPK +
Sbjct: 396 KDYDRARDVYKAAVKLVPHKTFTFAKLWLAYAYFEIRRLDVSAARKVLGAGIGMCPKPKL 455
Query: 321 V--WLE-ACRLARPDEAKSVVAKGVRQIPKSAN----------------KIRAL-----R 356
++E RL D +++ K + P ++ ++RA+ +
Sbjct: 456 FTGYIELEMRLREFDRVRTLYEKFLTYDPSLSSAWIQWTQVESAVEDFERVRAIFELAVQ 515
Query: 357 MALDEIPDSVRLWKALVEISS----EEEARILLHRAVECCPLDVELWL--ALVRLETYG- 409
+LD +P+ V WKA ++ + E AR L R +E V++W+ AL+ + T G
Sbjct: 516 QSLD-MPEIV--WKAYIDFEAGEGERERARNLYERLLERTS-HVKVWISYALMEIATLGG 571
Query: 410 -----------------VARSVLNKARKKL-----PKERAIWIAAAKL--EANGNTSMVG 445
+AR V + K L ++RA+ + + K + +G+ M+
Sbjct: 572 GEDEDGNEIEGEAGDADLARKVFERGYKDLRAKGEKEDRAVLLESWKSFEQEHGDEEMLA 631
Query: 446 KI 447
K+
Sbjct: 632 KV 633
Score = 35.4 bits (80), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 88/368 (23%), Positives = 141/368 (38%), Gaps = 58/368 (15%)
Query: 252 RMNDLKI-TTNSEL--RDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLI 308
R DL I T+ EL R+I AR + P+ W + LEEL + AR++
Sbjct: 107 RSVDLWIKYTDMELKARNINHARNLFDRAITLLPRVDALWYKYVYLEELLLNVSGARQIF 166
Query: 309 TKGCNMCPKNEDVWLEACRLARP----DEAKSVVAKGV--RQIPKSANKIRALRMALDE- 361
+ P N+ W +L D A ++ + + R IPK N + + D
Sbjct: 167 ERWMQWEP-NDKAWQSYIKLEERYNELDRASAIYERWIACRPIPK--NWVAWAKFEEDRG 223
Query: 362 IPDSVR-LWKALVEISSEEEARILLHRAVECCPLDVELWLALVRLETYGVARSVLNKARK 420
PD R +++ +E +EE ++ ++V +E RL+ + AR + A
Sbjct: 224 QPDKAREVFQTALEFFGDEEEQVEKAQSVFAAFARME-----TRLKEFERARVIYKFALA 278
Query: 421 KLPKER--AIWIAAAKLEANGNTSMVGKIIERGIRALQGEEVV----IDRDTWMKEAEVA 474
+LP+ + +++ K E ++ G R +Q EE + + D W A +
Sbjct: 279 RLPRSKSASLYAQYTKFEKQHGDRAGVELTVLGKRRIQYEEELAYDPTNYDAWFSLARLE 338
Query: 475 DRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTK 534
+ A D ED + DVE + R E A A PA +
Sbjct: 339 EDA---------------YRADREDGE-----DVEPMRVREVYERAVANVPPALEKRYWR 378
Query: 535 KNI--WLKAAQLE----KSYGCRESLIALLRKAVTYCPQAEV----LWLMGAKEKWLAGD 584
+ I WL+ A E K Y + + + AV P LWL A + D
Sbjct: 379 RYIYLWLQYAAFEEIDTKDY---DRARDVYKAAVKLVPHKTFTFAKLWLAYAYFEIRRLD 435
Query: 585 VPATRDIL 592
V A R +L
Sbjct: 436 VSAARKVL 443
>sp|P87312|CLF1_SCHPO Pre-mRNA-splicing factor cwf4 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cwf4 PE=1 SV=1
Length = 674
Score = 37.7 bits (86), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 55/263 (20%), Positives = 101/263 (38%), Gaps = 44/263 (16%)
Query: 381 ARILLHRAVECCPLDVELWLALVRLE----TYGVARSVLNKARKKLPKERAIWIAAAKLE 436
AR + RA++ + LWL + E AR++ ++A +LP+ +W +E
Sbjct: 89 ARSVFERALDVDSTYIPLWLKYIECEMKNRNINHARNLFDRAVTQLPRVDKLWYKYVYME 148
Query: 437 AN-GNTSMVGKIIERGI-------------------------RALQGEEVVIDRDT--WM 468
GN + ++ ER + R + VV+ + W+
Sbjct: 149 EMLGNITGCRQVFERWLKWEPDENCWMSYIRMERRYHENERARGIYERFVVVHPEVTNWL 208
Query: 469 KEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPAC 528
+ A + G+ + I+ E +R ++A + ++ E AR IF A
Sbjct: 209 RWARFEEECGNAANVRQVYLAAIDALGQEFLNERFFIAFAKFEIRQKEYERARTIFKYAI 268
Query: 529 TVFLTKKNIWL--KAAQLEKSYGCR---ESLIALLRKAVTY------CPQAEVLWLMGAK 577
K++ L + EK +G ES + L ++ + Y P WL K
Sbjct: 269 DFMPRSKSMELYKEYTHFEKQFGDHLGVESTV-LDKRRLQYEKLLKDSPYDYDTWLDLLK 327
Query: 578 EKWLAGDVPATRDILQEAYAAIP 600
+ AGD+ R+ ++A A +P
Sbjct: 328 LEESAGDINTIRETYEKAIAKVP 350
>sp|O14233|RNA14_SCHPO mRNA 3'-end-processing protein rna14 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rna14 PE=3 SV=1
Length = 733
Score = 37.7 bits (86), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 83/189 (43%), Gaps = 27/189 (14%)
Query: 282 PKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLARPDEA------- 334
P P W+ ++E A + I +G CP N ++ R A +EA
Sbjct: 329 PLCPQIWLDGFSYFLSISDEQRALQTIRRGMRYCPSN---FVLHVRYAEHEEANNRTSEI 385
Query: 335 ----KSVVAKGVRQIPK-SANKIRALRMALDEIPDSVRLWKALVEISSEEEARILLHRAV 389
+S++A R+I + + + + D P +L + LV + ++R++ ++
Sbjct: 386 RSTYESLIAALAREISQLDSKASSSSESSTDGNPQEKKLPEHLV----KRKSRLVRQYSL 441
Query: 390 E-CCPLDVELWLALVRLETYGVARSVLNKARKKLPKERAIWIAAAKLEANGNTSMV--GK 446
CC ++ A+ R E AR++ KARK + I+IA+A +E + + V +
Sbjct: 442 AWCCLIN-----AIRRTEGVKAARAIFTKARKAPYQSHEIYIASAMMEHHCSRDPVIASR 496
Query: 447 IIERGIRAL 455
I E G+R
Sbjct: 497 IFELGMRHF 505
>sp|Q9BZJ0|CRNL1_HUMAN Crooked neck-like protein 1 OS=Homo sapiens GN=CRNKL1 PE=1 SV=4
Length = 848
Score = 37.4 bits (85), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 87/214 (40%), Gaps = 33/214 (15%)
Query: 257 KITTNSELRDI-LKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMC 315
KIT EL D L+ RK + + WI+ A+ EE E AR + + ++
Sbjct: 213 KITDEEELNDYKLRKRKTFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDVD 272
Query: 316 PKNEDVWLEACRLA----RPDEAKSVVAKGVRQIPKSAN---KIRALRMALDEIPDSVRL 368
+N +WL+ + + + A+++ + + +P+ K + L + + ++
Sbjct: 273 YRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQV 332
Query: 369 WKALVEISSEEE-----------------ARILLHRAVECCPLDVELWLALVRLE----T 407
++ +E EE+ AR + R V P DV+ W+ R E
Sbjct: 333 FERWMEWQPEEQAWHSYINFELRYKEVDRARTIYERFVLVHP-DVKNWIKYARFEEKHAY 391
Query: 408 YGVARSVLNKARKKLPKER---AIWIAAAKLEAN 438
+ AR V +A + E +++A AK E N
Sbjct: 392 FAHARKVYERAVEFFGDEHMDEHLYVAFAKFEEN 425
>sp|Q9FNS4|MBB1_CHLRE PsbB mRNA maturation factor Mbb1, chloroplastic OS=Chlamydomonas
reinhardtii GN=MBB1 PE=2 SV=1
Length = 662
Score = 37.4 bits (85), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 78/183 (42%), Gaps = 16/183 (8%)
Query: 427 AIWIAAAKLEA-NGNTSMVGKIIERGIRA-LQGEEVVIDRDTWMKEAEVADRAGSVVTCV 484
A+W A A LEA G+ ++V + + + A + V + W + R G+ C+
Sbjct: 306 ALWQAWAVLEAKQGDPTVVRYLFRKALGANPRSRYVHLAWALWER------RQGNPQHCL 359
Query: 485 AIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQL 544
A++ E+ + + W A VE K+ G IE AR +F + +W +
Sbjct: 360 ALLRRGCELNPTDPALYQAW-ALVE--KQAGRIERARELFEQGLRADPSDLYMWQAYGVM 416
Query: 545 EKSYGCRESLIALLRKAVTYCPQAE----VLWLMGAKEKWLAGDVPATRDILQEAYAAIP 600
E G + L ++ V P++ V GA E W AG+V R++ + A P
Sbjct: 417 EAEQGNMDRARQLFQEGVWADPRSPSTVYVFHAWGALE-WQAGNVQTARELFKAAVRVDP 475
Query: 601 NSE 603
SE
Sbjct: 476 KSE 478
>sp|P42666|CYSP_PLAVS Cysteine proteinase OS=Plasmodium vivax (strain Salvador I) PE=2
SV=1
Length = 583
Score = 36.6 bits (83), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 25/128 (19%)
Query: 87 GLFVNLEYDDEDKEADAVWESIDKLMDSRRKSRREARLEEEIKNYRYKNPTIREEFADLK 146
GLFVNL+Y + M+ ++S ++ + E +YKN + + +K
Sbjct: 226 GLFVNLKYASK----------FFNFMNKYKRSYKDINEQME----KYKN--FKMNYLKIK 269
Query: 147 GKLSTVKAKEWERIPEIGDYSRRNKRKRFDSFVPVPDSLLQKARQEQQHVIALDPSSRAA 206
T + + ++ + DYS+++ F VP+PD L +K +V+ SS
Sbjct: 270 KHNETNQMYKM-KVNQFSDYSKKDFESYFRKLVPIPDHLKKK------YVVPF--SSMNN 320
Query: 207 GGAESVVT 214
G ++VVT
Sbjct: 321 GKGKNVVT 328
>sp|Q4PB37|CLF1_USTMA Pre-mRNA-splicing factor CLF1 OS=Ustilago maydis (strain 521 / FGSC
9021) GN=CLF1 PE=3 SV=1
Length = 781
Score = 36.2 bits (82), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 40/91 (43%)
Query: 503 TWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAV 562
TW+ +G ++ R+I+ A V +WL+ + E + L +AV
Sbjct: 72 TWIKYASWEASQGEMDRCRSIYERALDVEPHHLPLWLRYTEQELKMRNVQHARNLYDRAV 131
Query: 563 TYCPQAEVLWLMGAKEKWLAGDVPATRDILQ 593
+ P+ + LW + L G++P TR + +
Sbjct: 132 SILPRIDQLWYKYVHLEELLGNIPGTRQVFE 162
>sp|P0CO10|CLF1_CRYNJ Pre-mRNA-splicing factor CLF1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=CLF1 PE=3 SV=1
Length = 726
Score = 35.4 bits (80), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 88/368 (23%), Positives = 141/368 (38%), Gaps = 58/368 (15%)
Query: 252 RMNDLKI-TTNSEL--RDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLI 308
R DL I T+ EL R+I AR + P+ W + LEEL + AR++
Sbjct: 107 RSVDLWIKYTDMELKARNINHARNLFDRAITLLPRVDALWYKYVYLEELLLNVSGARQIF 166
Query: 309 TKGCNMCPKNEDVWLEACRLARP----DEAKSVVAKGV--RQIPKSANKIRALRMALDE- 361
+ P N+ W +L D A ++ + + R IPK N + + D
Sbjct: 167 ERWMQWEP-NDKAWQSYIKLEERYNELDRASAIYERWIACRPIPK--NWVTWAKFEEDRG 223
Query: 362 IPDSVR-LWKALVEISSEEEARILLHRAVECCPLDVELWLALVRLETYGVARSVLNKARK 420
PD R +++ +E +EE ++ ++V +E RL+ + AR + A
Sbjct: 224 QPDKAREVFQTALEFFGDEEEQVEKAQSVFAAFARME-----TRLKEFERARVIYKFALA 278
Query: 421 KLPKER--AIWIAAAKLEANGNTSMVGKIIERGIRALQGEEVV----IDRDTWMKEAEVA 474
+LP+ + +++ K E ++ G R +Q EE + + D W A +
Sbjct: 279 RLPRSKSASLYAQYTKFEKQHGDRAGVELTVLGKRRIQYEEELAYDPTNYDAWFSLARLE 338
Query: 475 DRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTK 534
+ A D ED + DVE + R E A A PA +
Sbjct: 339 EDA---------------YRADREDGE-----DVEPMRVREVYERAVANVPPALEKRYWR 378
Query: 535 KNI--WLKAAQLE----KSYGCRESLIALLRKAVTYCPQAEV----LWLMGAKEKWLAGD 584
+ I WL+ A E K Y + + + AV P LWL A + D
Sbjct: 379 RYIYLWLQYAAFEEIDTKDY---DRARDVYKAAVKLVPHKTFTFAKLWLAYAYFEIRRLD 435
Query: 585 VPATRDIL 592
V A R +L
Sbjct: 436 VSAARKVL 443
Score = 35.4 bits (80), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 80/179 (44%), Gaps = 38/179 (21%)
Query: 265 RDILKARKIVRAVTKNSPKKPLG----WIQAARLEELANEEAAARKLITKGCNMCPKNED 320
+D +AR + +A K P K W+ A E + +AARK++ G MCPK +
Sbjct: 396 KDYDRARDVYKAAVKLVPHKTFTFAKLWLAYAYFEIRRLDVSAARKVLGAGIGMCPKPKL 455
Query: 321 V--WLE-ACRLARPDEAKSVVAKGVRQIPKSAN----------------KIRAL-----R 356
++E RL D +++ K + P ++ ++RA+ +
Sbjct: 456 FTGYIELEMRLREFDRVRTLYEKFLTYDPSLSSAWIQWTQVESAVEDFERVRAIFELAVQ 515
Query: 357 MALDEIPDSVRLWKALVEISS----EEEARILLHRAVECCPLDVELWL--ALVRLETYG 409
+LD +P+ V WKA ++ + E AR L R +E V++W+ AL+ + T G
Sbjct: 516 QSLD-MPEIV--WKAYIDFEAGEGERERARNLYERLLERTS-HVKVWISYALMEIATLG 570
>sp|P0CO11|CLF1_CRYNB Pre-mRNA-splicing factor CLF1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=CLF1 PE=3 SV=1
Length = 726
Score = 35.4 bits (80), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 88/368 (23%), Positives = 141/368 (38%), Gaps = 58/368 (15%)
Query: 252 RMNDLKI-TTNSEL--RDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLI 308
R DL I T+ EL R+I AR + P+ W + LEEL + AR++
Sbjct: 107 RSVDLWIKYTDMELKARNINHARNLFDRAITLLPRVDALWYKYVYLEELLLNVSGARQIF 166
Query: 309 TKGCNMCPKNEDVWLEACRLARP----DEAKSVVAKGV--RQIPKSANKIRALRMALDE- 361
+ P N+ W +L D A ++ + + R IPK N + + D
Sbjct: 167 ERWMQWEP-NDKAWQSYIKLEERYNELDRASAIYERWIACRPIPK--NWVTWAKFEEDRG 223
Query: 362 IPDSVR-LWKALVEISSEEEARILLHRAVECCPLDVELWLALVRLETYGVARSVLNKARK 420
PD R +++ +E +EE ++ ++V +E RL+ + AR + A
Sbjct: 224 QPDKAREVFQTALEFFGDEEEQVEKAQSVFAAFARME-----TRLKEFERARVIYKFALA 278
Query: 421 KLPKER--AIWIAAAKLEANGNTSMVGKIIERGIRALQGEEVV----IDRDTWMKEAEVA 474
+LP+ + +++ K E ++ G R +Q EE + + D W A +
Sbjct: 279 RLPRSKSASLYAQYTKFEKQHGDRAGVELTVLGKRRIQYEEELAYDPTNYDAWFSLARLE 338
Query: 475 DRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTK 534
+ A D ED + DVE + R E A A PA +
Sbjct: 339 EDA---------------YRADREDGE-----DVEPMRVREVYERAVANVPPALEKRYWR 378
Query: 535 KNI--WLKAAQLE----KSYGCRESLIALLRKAVTYCPQAEV----LWLMGAKEKWLAGD 584
+ I WL+ A E K Y + + + AV P LWL A + D
Sbjct: 379 RYIYLWLQYAAFEEIDTKDY---DRARDVYKAAVKLVPHKTFTFAKLWLAYAYFEIRRLD 435
Query: 585 VPATRDIL 592
V A R +L
Sbjct: 436 VSAARKVL 443
Score = 35.4 bits (80), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 80/179 (44%), Gaps = 38/179 (21%)
Query: 265 RDILKARKIVRAVTKNSPKKPLG----WIQAARLEELANEEAAARKLITKGCNMCPKNED 320
+D +AR + +A K P K W+ A E + +AARK++ G MCPK +
Sbjct: 396 KDYDRARDVYKAAVKLVPHKTFTFAKLWLAYAYFEIRRLDVSAARKVLGAGIGMCPKPKL 455
Query: 321 V--WLE-ACRLARPDEAKSVVAKGVRQIPKSAN----------------KIRAL-----R 356
++E RL D +++ K + P ++ ++RA+ +
Sbjct: 456 FTGYIELEMRLREFDRVRTLYEKFLTYDPSLSSAWIQWTQVESAVEDFERVRAIFELAVQ 515
Query: 357 MALDEIPDSVRLWKALVEISS----EEEARILLHRAVECCPLDVELWL--ALVRLETYG 409
+LD +P+ V WKA ++ + E AR L R +E V++W+ AL+ + T G
Sbjct: 516 QSLD-MPEIV--WKAYIDFEAGEGERERARNLYERLLERTS-HVKVWISYALMEIATLG 570
>sp|P63155|CRNL1_RAT Crooked neck-like protein 1 OS=Rattus norvegicus GN=Crnkl1 PE=2
SV=1
Length = 690
Score = 35.0 bits (79), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 46/215 (21%), Positives = 85/215 (39%), Gaps = 35/215 (16%)
Query: 257 KITTNSELRDI-LKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMC 315
KIT EL D L+ RK + + WI+ A+ EE E AR + + ++
Sbjct: 52 KITDEEELNDYKLRKRKTFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDVD 111
Query: 316 PKNEDVWLEACRLA----RPDEAKSVVAKGVRQIPKSANKIRALRMALDEIPDSV----- 366
+N +WL+ + + + A+++ + + +P+ N+ ++E+ +V
Sbjct: 112 YRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPR-VNQFWYKYTYMEEMLGNVAGARQ 170
Query: 367 ------------RLWKALVEISSE----EEARILLHRAVECCPLDVELWLALVRLE---- 406
+ W + + E AR + R V P V+ W+ R E
Sbjct: 171 VFERWMEWQPEEQAWHSYINFELRYKEVERARTIYERFVLVHPA-VKNWIKYARFEEKHA 229
Query: 407 TYGVARSVLNKARKKLPKER---AIWIAAAKLEAN 438
+ AR V +A + E +++A AK E N
Sbjct: 230 YFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEEN 264
>sp|P63154|CRNL1_MOUSE Crooked neck-like protein 1 OS=Mus musculus GN=Crnkl1 PE=2 SV=1
Length = 690
Score = 35.0 bits (79), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 46/215 (21%), Positives = 85/215 (39%), Gaps = 35/215 (16%)
Query: 257 KITTNSELRDI-LKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMC 315
KIT EL D L+ RK + + WI+ A+ EE E AR + + ++
Sbjct: 52 KITDEEELNDYKLRKRKTFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDVD 111
Query: 316 PKNEDVWLEACRLA----RPDEAKSVVAKGVRQIPKSANKIRALRMALDEIPDSV----- 366
+N +WL+ + + + A+++ + + +P+ N+ ++E+ +V
Sbjct: 112 YRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPR-VNQFWYKYTYMEEMLGNVAGARQ 170
Query: 367 ------------RLWKALVEISSE----EEARILLHRAVECCPLDVELWLALVRLE---- 406
+ W + + E AR + R V P V+ W+ R E
Sbjct: 171 VFERWMEWQPEEQAWHSYINFELRYKEVERARTIYERFVLVHPA-VKNWIKYARFEEKHA 229
Query: 407 TYGVARSVLNKARKKLPKER---AIWIAAAKLEAN 438
+ AR V +A + E +++A AK E N
Sbjct: 230 YFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEEN 264
>sp|Q750X3|CLF1_ASHGO Pre-mRNA-splicing factor CLF1 OS=Ashbya gossypii (strain ATCC 10895
/ CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=CLF1 PE=3
SV=1
Length = 683
Score = 33.9 bits (76), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 86/225 (38%), Gaps = 41/225 (18%)
Query: 366 VRLWKALVEISSEEE----ARILLHRAVECCPLDVELWLALV----RLETYGVARSVLNK 417
VR W E+ AR + RA+ P DV +WL V R AR++L +
Sbjct: 60 VRQWLRYAAFEYEQRDMRRARSVFERALAVAPGDVVVWLRYVDCELRARDVNHARNLLVR 119
Query: 418 ARKKLPKERAIWIAAAKLEAN-GNTSMVGKIIER-------------------------G 451
A LP+ +W +E + G +V + +
Sbjct: 120 ATALLPRVDKLWYKYVLMEESLGQVELVRGVYTKWCTLEPAAAAWDAFVDFETRQGQVEH 179
Query: 452 IRALQGEEVVID--RDTWMKEAEVADR---AGSV--VTCVAIITNTIEIGVDEEDKKRTW 504
+R + V++ TW+K + AG+V V +A T T G D + ++
Sbjct: 180 VREVYSRYVMVHPVAATWLKWVAFERKHGDAGTVRRVYSLACDTLTAFAGADVHEVEQLV 239
Query: 505 VADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYG 549
V+ E + +E +RA+ S A + + + AQLEK +G
Sbjct: 240 VSFAEWEATQQELERSRAVLSVAVSRWPESSTLKDATAQLEKKFG 284
>sp|Q8BG95|MYPT2_MOUSE Protein phosphatase 1 regulatory subunit 12B OS=Mus musculus
GN=Ppp1r12b PE=1 SV=2
Length = 976
Score = 33.9 bits (76), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 48/222 (21%), Positives = 96/222 (43%), Gaps = 31/222 (13%)
Query: 288 WIQAARLEELANEEAAARKLITKGCNMCPKNED--VWLEACRLARPDEAKSVVAKGVRQI 345
W + +E A + A R+L T+ + + ED V+L AC DE K ++A+G
Sbjct: 26 WRGSLTEQEPAERQGAGRQLQTRRGSPRVRFEDGAVFLAACSSGDTDEVKKLLARGADIN 85
Query: 346 PKSANKIRALRMALDEIPDSVRLWKALVE-----ISSEEEARILLHRAVECCPLDVELWL 400
+ + + AL A I +++ + K LVE + E LH A C L++ +
Sbjct: 86 TVNVDGLTALHQAC--IDENLDMVKFLVENRANVNQQDNEGWTPLHAAASCGYLNIAEYF 143
Query: 401 ALVRLETYGVARSVLNKARKKLPKERAIWIAAAKLEANGNTSMVGKIIERGI-----RAL 455
++G + ++N + ++P + A A L ++ ++ ++G+ R
Sbjct: 144 I-----SHGASVGIVN-SEGEVPSDLAEEPAMKDL-------LLEQVKKQGVDLEQSRKE 190
Query: 456 QGEEVVIDRDTWMKEAEVAD----RAGSVVTCVAIITNTIEI 493
+ ++++ D W+ + D R+G+ VA E+
Sbjct: 191 EEQQMLQDARQWLNSGRIEDVRQARSGATALHVAAAKGYSEV 232
>sp|B8F5X3|HTPG_HAEPS Chaperone protein HtpG OS=Haemophilus parasuis serovar 5 (strain
SH0165) GN=htpG PE=3 SV=1
Length = 628
Score = 33.5 bits (75), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 27/111 (24%)
Query: 93 EYDDEDKEADAVWESIDKLMDSRRKSRREARLEEEIKNYRYKNPTIREEFADLKGKLSTV 152
EYDDE KE WE I+K +S+ E EE + Y++ I +FAD
Sbjct: 215 EYDDEGKETGTKWEKINKAQALWTRSKNEISDEEYKEFYKH----ISHDFAD-------- 262
Query: 153 KAKEWERIPEIGDYSRRNKRKRFDSFVPVPD----SLLQKARQEQQHVIAL 199
P I +++ ++ + S + VP L Q+ EQ+H + L
Sbjct: 263 --------PLIWSHNKVEGKQEYTSLLYVPSKAPWDLFQR---EQKHGLKL 302
>sp|Q4V817|CB068_XENLA UPF0561 protein C2orf68 homolog OS=Xenopus laevis PE=2 SV=1
Length = 151
Score = 32.7 bits (73), Expect = 7.5, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 41/96 (42%)
Query: 39 GRTRTAPPSTIIGLPRPKPRDDDGEDDNDDDGNNGYQQNFDHFEGNDAGLFVNLEYDDED 98
G TR P + PR + + E D+ +NG Q FE + + + Y+D+D
Sbjct: 55 GPTRQKKPDLQVYHPRQREKAHTTETLKDEPNDNGTQLFCLDFEADGGEVTSIIVYEDDD 114
Query: 99 KEADAVWESIDKLMDSRRKSRREARLEEEIKNYRYK 134
E A S ++ + + R++EEI R +
Sbjct: 115 AEQLATMISNQNQLEGDMREALKQRIQEEISKRRVQ 150
>sp|Q75LL6|TADA2_ORYSJ Transcriptional adapter ADA2 OS=Oryza sativa subsp. japonica
GN=ADA2 PE=2 SV=2
Length = 567
Score = 32.7 bits (73), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 11/132 (8%)
Query: 13 LNSKPPANYIAGAGRGASS---FTTRSDIGRTRTAPPSTIIGLPRPKPRDDDGEDDNDDD 69
L + P++ GA + AS+ F +++ + IG+ +P+ D+G +
Sbjct: 217 LAGRSPSHIAGGANKKASNVGQFKDGANVAKVEDGHVDRSIGVKKPRYSADEGPSLTELS 276
Query: 70 GNNGYQQNFDHFEGNDA-GLFVNLEYDDEDKEADAVWE-SIDKLMDSR---RKSRREARL 124
G N + FD NDA +E+ + D E D + + ++ SR RK R+E L
Sbjct: 277 GYNSKRHEFDPEYDNDAEQALAEMEFKETDSETDRELKLRVLRIYLSRLDERKRRKEFIL 336
Query: 125 EEEIKNYRYKNP 136
E +N + NP
Sbjct: 337 E---RNLLFPNP 345
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 228,172,952
Number of Sequences: 539616
Number of extensions: 9888105
Number of successful extensions: 40936
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 150
Number of HSP's that attempted gapping in prelim test: 39505
Number of HSP's gapped (non-prelim): 882
length of query: 605
length of database: 191,569,459
effective HSP length: 123
effective length of query: 482
effective length of database: 125,196,691
effective search space: 60344805062
effective search space used: 60344805062
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)