Query 007407
Match_columns 605
No_of_seqs 341 out of 1927
Neff 8.0
Searched_HMMs 46136
Date Thu Mar 28 23:10:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007407.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007407hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0495 HAT repeat protein [RN 100.0 6E-148 1E-152 1158.0 57.8 596 3-605 8-620 (913)
2 PF06424 PRP1_N: PRP1 splicing 100.0 1E-58 2.2E-63 407.3 10.5 133 17-169 1-133 (133)
3 KOG0495 HAT repeat protein [RN 100.0 1E-38 2.3E-43 336.1 37.7 386 196-604 241-754 (913)
4 KOG4626 O-linked N-acetylgluco 100.0 2E-27 4.3E-32 249.8 30.1 353 242-604 109-491 (966)
5 KOG1915 Cell cycle control pro 100.0 3.7E-25 7.9E-30 227.0 34.2 332 259-600 81-587 (677)
6 KOG4626 O-linked N-acetylgluco 99.9 5.5E-26 1.2E-30 239.0 27.6 332 263-602 94-455 (966)
7 TIGR02917 PEP_TPR_lipo putativ 99.9 1.3E-24 2.8E-29 254.6 42.0 334 261-604 475-872 (899)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 1.3E-23 2.9E-28 246.0 44.4 339 260-603 440-837 (899)
9 TIGR00990 3a0801s09 mitochondr 99.9 2.8E-23 6E-28 236.3 41.6 336 259-602 168-575 (615)
10 KOG1915 Cell cycle control pro 99.9 1.2E-23 2.7E-28 215.8 33.8 331 269-602 57-470 (677)
11 PRK11447 cellulose synthase su 99.9 5.7E-23 1.2E-27 248.6 45.7 354 244-604 25-530 (1157)
12 TIGR00990 3a0801s09 mitochondr 99.9 6.5E-23 1.4E-27 233.3 42.0 336 259-603 135-542 (615)
13 PRK15174 Vi polysaccharide exp 99.9 9E-23 1.9E-27 232.6 40.6 322 261-603 52-386 (656)
14 PRK11447 cellulose synthase su 99.9 2.6E-22 5.6E-27 242.9 44.8 332 261-597 279-739 (1157)
15 PRK10049 pgaA outer membrane p 99.9 1.2E-21 2.5E-26 227.7 34.9 340 260-604 58-462 (765)
16 PRK15174 Vi polysaccharide exp 99.9 8.1E-21 1.8E-25 216.6 38.8 308 261-601 86-406 (656)
17 PRK10049 pgaA outer membrane p 99.9 6.8E-20 1.5E-24 212.9 36.8 338 262-604 26-428 (765)
18 PRK09782 bacteriophage N4 rece 99.9 1.8E-18 3.9E-23 202.6 39.1 332 262-605 353-713 (987)
19 KOG2002 TPR-containing nuclear 99.8 3.3E-17 7.2E-22 181.5 37.2 331 267-597 146-592 (1018)
20 PRK11788 tetratricopeptide rep 99.8 8.8E-17 1.9E-21 172.4 37.0 290 261-597 45-346 (389)
21 KOG2002 TPR-containing nuclear 99.8 1.9E-17 4E-22 183.5 28.6 375 223-604 315-751 (1018)
22 PF13429 TPR_15: Tetratricopep 99.8 4E-19 8.7E-24 182.4 14.2 268 279-598 4-277 (280)
23 KOG2047 mRNA splicing factor [ 99.8 1.8E-16 3.8E-21 168.7 34.1 239 358-600 341-617 (835)
24 PRK14574 hmsH outer membrane p 99.8 3.2E-16 6.9E-21 180.5 39.1 368 232-604 51-519 (822)
25 PRK11788 tetratricopeptide rep 99.8 2.3E-16 4.9E-21 169.2 34.4 269 288-603 38-316 (389)
26 PRK09782 bacteriophage N4 rece 99.8 3E-16 6.6E-21 183.9 37.5 318 261-603 386-745 (987)
27 KOG0547 Translocase of outer m 99.8 2E-16 4.4E-21 164.0 30.5 330 261-598 125-566 (606)
28 TIGR00540 hemY_coli hemY prote 99.7 6.3E-15 1.4E-19 159.5 36.7 291 261-598 94-399 (409)
29 KOG1126 DNA-binding cell divis 99.7 1.3E-15 2.8E-20 163.9 26.6 281 265-570 333-626 (638)
30 PRK14574 hmsH outer membrane p 99.7 3.5E-14 7.6E-19 163.7 39.8 338 261-603 44-484 (822)
31 KOG1155 Anaphase-promoting com 99.7 6.4E-14 1.4E-18 144.9 37.2 308 282-600 161-538 (559)
32 PF13429 TPR_15: Tetratricopep 99.7 2.2E-17 4.8E-22 169.5 11.2 224 374-604 20-249 (280)
33 KOG4162 Predicted calmodulin-b 99.7 5.5E-14 1.2E-18 153.2 35.5 341 261-604 333-789 (799)
34 KOG2076 RNA polymerase III tra 99.7 4.6E-14 1E-18 156.1 33.2 319 262-601 150-513 (895)
35 KOG2047 mRNA splicing factor [ 99.7 5.1E-14 1.1E-18 150.2 31.0 325 263-593 359-718 (835)
36 PRK10747 putative protoheme IX 99.7 2.3E-13 5E-18 146.8 36.3 283 262-599 95-391 (398)
37 PRK12370 invasion protein regu 99.7 4.9E-14 1.1E-18 158.3 29.2 235 349-597 278-534 (553)
38 KOG0547 Translocase of outer m 99.6 7.1E-14 1.5E-18 145.3 25.7 332 228-566 128-568 (606)
39 KOG1173 Anaphase-promoting com 99.6 8E-14 1.7E-18 147.4 26.5 339 256-604 146-524 (611)
40 TIGR02521 type_IV_pilW type IV 99.6 2.6E-13 5.6E-18 132.6 27.6 189 406-600 45-234 (234)
41 KOG1126 DNA-binding cell divis 99.6 1E-13 2.3E-18 149.3 26.0 282 300-603 334-625 (638)
42 KOG0548 Molecular co-chaperone 99.6 4.1E-13 8.9E-18 141.7 29.7 355 230-603 17-460 (539)
43 KOG0624 dsRNA-activated protei 99.6 2.6E-13 5.6E-18 135.6 26.2 309 262-571 49-377 (504)
44 KOG2396 HAT (Half-A-TPR) repea 99.6 2.2E-12 4.8E-17 134.9 31.5 420 159-602 12-564 (568)
45 PRK12370 invasion protein regu 99.6 6.4E-13 1.4E-17 149.4 28.4 209 380-598 279-502 (553)
46 KOG1914 mRNA cleavage and poly 99.6 1.6E-11 3.4E-16 129.4 35.9 331 261-598 29-464 (656)
47 KOG1155 Anaphase-promoting com 99.6 1.2E-11 2.5E-16 128.4 31.9 290 261-566 174-538 (559)
48 TIGR00540 hemY_coli hemY prote 99.5 6.5E-12 1.4E-16 136.1 31.5 251 349-603 101-371 (409)
49 KOG1125 TPR repeat-containing 99.5 3.7E-13 8.1E-18 143.0 19.7 224 371-602 294-531 (579)
50 PLN03218 maturation of RBCL 1; 99.5 9.3E-11 2E-15 139.0 41.9 316 261-599 447-784 (1060)
51 KOG1258 mRNA processing protei 99.5 3.9E-11 8.5E-16 128.9 34.6 347 244-602 43-474 (577)
52 TIGR02521 type_IV_pilW type IV 99.5 8.9E-12 1.9E-16 121.7 27.0 188 373-566 42-234 (234)
53 PRK11189 lipoprotein NlpI; Pro 99.5 4.7E-12 1E-16 131.1 25.9 207 350-568 44-269 (296)
54 KOG0624 dsRNA-activated protei 99.5 1.2E-11 2.6E-16 123.8 27.0 302 281-604 34-376 (504)
55 PLN03081 pentatricopeptide (PP 99.5 1.2E-11 2.6E-16 143.1 31.3 215 374-598 337-557 (697)
56 KOG2076 RNA polymerase III tra 99.5 1.9E-11 4.1E-16 135.7 30.9 313 258-587 180-544 (895)
57 PLN03218 maturation of RBCL 1; 99.5 5.6E-10 1.2E-14 132.5 44.9 330 261-601 380-753 (1060)
58 PLN03077 Protein ECB2; Provisi 99.5 6.1E-11 1.3E-15 140.4 35.4 322 260-598 332-720 (857)
59 KOG1070 rRNA processing protei 99.5 9.3E-12 2E-16 142.4 26.9 239 353-598 1445-1700(1710)
60 COG3063 PilF Tfp pilus assembl 99.5 1.2E-11 2.6E-16 118.4 23.4 192 407-604 50-242 (250)
61 KOG1129 TPR repeat-containing 99.5 2E-12 4.2E-17 128.7 18.5 225 370-603 231-463 (478)
62 KOG1174 Anaphase-promoting com 99.5 7.9E-11 1.7E-15 120.6 30.3 334 260-603 106-505 (564)
63 KOG1070 rRNA processing protei 99.5 4.5E-12 9.8E-17 144.9 23.6 207 384-599 1446-1664(1710)
64 PLN02789 farnesyltranstransfer 99.5 1.8E-11 4E-16 127.3 26.3 217 376-600 51-304 (320)
65 PRK10747 putative protoheme IX 99.5 6.8E-11 1.5E-15 127.6 31.3 225 373-603 129-362 (398)
66 KOG1173 Anaphase-promoting com 99.5 2.8E-11 6.1E-16 128.4 27.2 276 283-577 242-531 (611)
67 KOG1125 TPR repeat-containing 99.5 5.9E-12 1.3E-16 134.0 21.2 233 349-589 302-562 (579)
68 PLN03081 pentatricopeptide (PP 99.5 1.4E-10 3.1E-15 134.2 34.4 327 259-603 166-528 (697)
69 PRK11189 lipoprotein NlpI; Pro 99.4 9.6E-11 2.1E-15 121.4 28.4 229 265-550 40-286 (296)
70 KOG4162 Predicted calmodulin-b 99.4 7.1E-11 1.5E-15 129.3 27.6 285 262-571 455-790 (799)
71 PLN02789 farnesyltranstransfer 99.4 3E-11 6.5E-16 125.7 22.5 206 377-603 35-255 (320)
72 PLN03077 Protein ECB2; Provisi 99.4 8.2E-10 1.8E-14 130.9 36.9 302 284-604 322-692 (857)
73 COG3063 PilF Tfp pilus assembl 99.4 1.6E-10 3.5E-15 110.8 24.1 196 370-571 43-243 (250)
74 KOG0548 Molecular co-chaperone 99.4 4.5E-10 9.8E-15 119.0 28.8 322 261-603 12-426 (539)
75 KOG1129 TPR repeat-containing 99.4 4E-11 8.6E-16 119.5 19.4 216 350-571 241-465 (478)
76 KOG1156 N-terminal acetyltrans 99.4 4.5E-10 9.7E-15 121.0 28.0 318 262-600 18-436 (700)
77 KOG1914 mRNA cleavage and poly 99.3 3.8E-09 8.2E-14 111.8 33.3 322 275-604 10-436 (656)
78 PRK15359 type III secretion sy 99.3 1.8E-11 3.9E-16 113.0 14.3 113 485-603 14-126 (144)
79 KOG1174 Anaphase-promoting com 99.3 1.8E-09 4E-14 110.7 29.2 289 267-578 214-514 (564)
80 KOG0550 Molecular chaperone (D 99.3 9.8E-11 2.1E-15 120.2 19.6 280 260-567 58-353 (486)
81 cd05804 StaR_like StaR_like; a 99.3 5.8E-09 1.2E-13 110.5 34.1 305 280-599 1-337 (355)
82 KOG1127 TPR repeat-containing 99.3 2.4E-10 5.2E-15 127.6 23.9 338 265-603 472-884 (1238)
83 TIGR03302 OM_YfiO outer membra 99.3 3.1E-10 6.8E-15 113.2 22.9 175 425-601 32-235 (235)
84 PRK10370 formate-dependent nit 99.3 1E-10 2.2E-15 113.8 17.2 124 477-603 52-178 (198)
85 KOG1127 TPR repeat-containing 99.3 3.4E-09 7.3E-14 118.6 29.3 184 409-598 475-659 (1238)
86 TIGR02552 LcrH_SycD type III s 99.3 9.3E-11 2E-15 106.3 14.5 117 485-604 4-120 (135)
87 PRK15359 type III secretion sy 99.3 2.6E-10 5.6E-15 105.2 16.4 124 445-579 13-136 (144)
88 KOG1258 mRNA processing protei 99.2 4.3E-09 9.3E-14 113.4 27.6 254 350-604 63-401 (577)
89 COG2956 Predicted N-acetylgluc 99.2 5.7E-09 1.2E-13 104.4 26.4 219 377-601 50-281 (389)
90 KOG2003 TPR repeat-containing 99.2 5.4E-09 1.2E-13 108.1 26.9 189 407-603 505-694 (840)
91 KOG3060 Uncharacterized conser 99.2 1.8E-09 3.9E-14 104.8 21.6 198 377-582 27-238 (289)
92 COG2956 Predicted N-acetylgluc 99.2 1.2E-08 2.6E-13 102.2 27.2 248 349-601 52-314 (389)
93 cd05804 StaR_like StaR_like; a 99.2 2E-09 4.3E-14 114.0 22.9 99 501-599 114-216 (355)
94 KOG3060 Uncharacterized conser 99.2 6E-09 1.3E-13 101.3 23.2 170 425-602 48-224 (289)
95 KOG1840 Kinesin light chain [C 99.2 6.7E-09 1.4E-13 113.3 26.0 227 372-598 209-479 (508)
96 PRK15179 Vi polysaccharide bio 99.2 2.9E-09 6.3E-14 121.2 22.1 133 464-599 86-218 (694)
97 PF12569 NARP1: NMDA receptor- 99.2 1.2E-07 2.5E-12 104.6 33.9 265 261-532 14-336 (517)
98 PF05843 Suf: Suppressor of fo 99.1 7.6E-10 1.6E-14 113.6 13.3 133 466-601 3-139 (280)
99 TIGR03302 OM_YfiO outer membra 99.1 1.7E-08 3.7E-13 100.6 22.3 167 376-567 47-235 (235)
100 KOG2003 TPR repeat-containing 99.1 1.2E-07 2.7E-12 98.2 28.4 268 261-550 429-709 (840)
101 PF12569 NARP1: NMDA receptor- 99.1 5E-07 1.1E-11 99.6 33.8 298 284-599 3-335 (517)
102 PRK15179 Vi polysaccharide bio 99.1 2.1E-08 4.5E-13 114.3 23.6 144 415-566 75-219 (694)
103 PRK15363 pathogenicity island 99.1 3.7E-09 8E-14 97.1 13.9 100 500-599 34-133 (157)
104 KOG1156 N-terminal acetyltrans 99.0 2.7E-07 5.8E-12 100.0 29.5 89 506-594 376-464 (700)
105 KOG2396 HAT (Half-A-TPR) repea 99.0 1.3E-06 2.7E-11 92.4 33.6 98 267-376 87-184 (568)
106 COG5010 TadD Flp pilus assembl 99.0 3.7E-08 8E-13 96.6 20.6 175 411-594 52-227 (257)
107 PRK10370 formate-dependent nit 99.0 1.2E-08 2.5E-13 99.3 16.7 122 439-568 53-177 (198)
108 COG3071 HemY Uncharacterized e 99.0 3E-06 6.6E-11 87.5 34.6 284 262-599 95-391 (400)
109 TIGR02552 LcrH_SycD type III s 99.0 1.5E-08 3.2E-13 91.8 15.5 120 446-573 4-123 (135)
110 KOG1840 Kinesin light chain [C 99.0 7.1E-07 1.5E-11 97.6 30.3 250 280-564 194-479 (508)
111 PF05843 Suf: Suppressor of fo 98.9 1.2E-08 2.5E-13 104.9 14.6 138 428-573 3-145 (280)
112 COG5107 RNA14 Pre-mRNA 3'-end 98.9 1.6E-06 3.4E-11 90.4 28.7 331 258-597 49-494 (660)
113 PLN03088 SGT1, suppressor of 98.9 1.2E-08 2.5E-13 108.4 13.7 113 466-581 4-116 (356)
114 KOG0553 TPR repeat-containing 98.9 1.4E-08 3.1E-13 101.2 13.2 117 467-586 84-200 (304)
115 TIGR02795 tol_pal_ybgF tol-pal 98.9 3.3E-08 7E-13 86.9 14.2 102 502-603 3-110 (119)
116 cd00189 TPR Tetratricopeptide 98.9 1.8E-08 3.9E-13 82.6 11.8 99 503-601 2-100 (100)
117 KOG0550 Molecular chaperone (D 98.9 7E-08 1.5E-12 99.5 18.2 247 350-601 67-353 (486)
118 KOG0128 RNA-binding protein SA 98.9 1.6E-06 3.5E-11 96.4 29.5 342 242-594 106-559 (881)
119 PRK14720 transcript cleavage f 98.9 1.3E-07 2.8E-12 108.9 21.4 216 361-603 26-257 (906)
120 KOG0553 TPR repeat-containing 98.9 1.3E-08 2.8E-13 101.5 11.1 101 504-604 84-184 (304)
121 PLN03088 SGT1, suppressor of 98.9 6.9E-08 1.5E-12 102.6 16.7 101 504-604 5-105 (356)
122 KOG2376 Signal recognition par 98.8 1.3E-05 2.8E-10 86.4 32.9 320 247-594 13-401 (652)
123 COG4783 Putative Zn-dependent 98.8 1.5E-07 3.3E-12 99.3 17.3 130 464-596 306-435 (484)
124 PRK14720 transcript cleavage f 98.8 1.7E-06 3.6E-11 99.9 25.8 238 279-547 25-269 (906)
125 PRK02603 photosystem I assembl 98.8 2E-07 4.4E-12 88.5 14.9 103 500-602 34-153 (172)
126 COG5010 TadD Flp pilus assembl 98.7 1.1E-06 2.4E-11 86.4 19.5 177 377-562 48-229 (257)
127 PRK15363 pathogenicity island 98.7 2.5E-07 5.4E-12 85.1 14.1 103 463-568 34-136 (157)
128 PF13414 TPR_11: TPR repeat; P 98.7 5.3E-08 1.2E-12 77.5 8.5 67 534-600 2-69 (69)
129 PF09976 TPR_21: Tetratricopep 98.7 6.1E-07 1.3E-11 82.8 16.7 120 476-596 23-145 (145)
130 COG3071 HemY Uncharacterized e 98.7 5E-05 1.1E-09 78.7 31.0 248 349-603 101-362 (400)
131 PF13432 TPR_16: Tetratricopep 98.7 4.6E-08 1E-12 76.9 6.7 62 541-602 3-64 (65)
132 KOG1128 Uncharacterized conser 98.7 7.2E-07 1.6E-11 98.0 17.7 209 373-599 409-617 (777)
133 CHL00033 ycf3 photosystem I as 98.7 5.3E-07 1.1E-11 85.3 14.6 121 481-602 16-153 (168)
134 TIGR02795 tol_pal_ybgF tol-pal 98.7 7.7E-07 1.7E-11 78.0 14.6 107 465-571 3-112 (119)
135 COG4783 Putative Zn-dependent 98.6 2.4E-06 5.2E-11 90.4 20.1 136 423-566 303-439 (484)
136 PF13432 TPR_16: Tetratricopep 98.6 1.1E-07 2.4E-12 74.7 7.8 64 506-569 2-65 (65)
137 PRK10803 tol-pal system protei 98.6 8.4E-07 1.8E-11 89.9 15.0 103 501-603 142-251 (263)
138 COG4235 Cytochrome c biogenesi 98.6 1.3E-06 2.8E-11 87.9 15.8 120 480-602 138-260 (287)
139 KOG2376 Signal recognition par 98.6 0.00015 3.2E-09 78.5 31.9 123 479-604 356-493 (652)
140 PF12895 Apc3: Anaphase-promot 98.6 1.5E-07 3.3E-12 78.1 7.4 81 514-595 2-84 (84)
141 PF13414 TPR_11: TPR repeat; P 98.6 2.5E-07 5.4E-12 73.6 8.2 67 500-566 2-69 (69)
142 cd00189 TPR Tetratricopeptide 98.6 8.3E-07 1.8E-11 72.5 11.8 99 466-567 2-100 (100)
143 COG5107 RNA14 Pre-mRNA 3'-end 98.6 0.00015 3.3E-09 76.0 30.1 335 261-602 86-535 (660)
144 PRK04841 transcriptional regul 98.6 0.00019 4.2E-09 85.8 35.9 228 374-601 503-763 (903)
145 PRK02603 photosystem I assembl 98.5 5.7E-06 1.2E-10 78.5 17.3 106 463-568 34-153 (172)
146 PF14559 TPR_19: Tetratricopep 98.5 3.6E-07 7.8E-12 72.4 6.9 67 512-578 2-68 (68)
147 KOG0128 RNA-binding protein SA 98.5 6.1E-05 1.3E-09 84.2 26.3 325 263-599 91-527 (881)
148 PF04733 Coatomer_E: Coatomer 98.5 1.9E-06 4E-11 88.8 13.8 163 430-603 106-270 (290)
149 PRK15331 chaperone protein Sic 98.5 2.4E-06 5.1E-11 79.1 12.9 102 500-602 36-137 (165)
150 PF09976 TPR_21: Tetratricopep 98.5 7.4E-06 1.6E-10 75.5 16.3 123 437-562 23-145 (145)
151 PF13525 YfiO: Outer membrane 98.5 2.5E-05 5.4E-10 76.3 20.5 163 426-590 5-199 (203)
152 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 6.6E-06 1.4E-10 87.7 16.6 116 472-593 177-292 (395)
153 PRK10866 outer membrane biogen 98.4 7.6E-05 1.6E-09 75.0 22.7 168 425-594 31-237 (243)
154 PF14938 SNAP: Soluble NSF att 98.4 3.9E-05 8.4E-10 79.0 21.0 208 380-602 2-229 (282)
155 COG0457 NrfG FOG: TPR repeat [ 98.4 0.00049 1.1E-08 64.8 27.2 218 379-601 40-268 (291)
156 KOG1128 Uncharacterized conser 98.4 7.9E-06 1.7E-10 90.0 16.1 167 426-605 395-589 (777)
157 PRK10153 DNA-binding transcrip 98.4 1.3E-05 2.8E-10 89.0 17.6 72 531-603 416-487 (517)
158 KOG3785 Uncharacterized conser 98.3 0.00022 4.7E-09 72.8 24.1 317 261-594 67-453 (557)
159 PRK11906 transcriptional regul 98.3 9.9E-06 2.2E-10 86.2 14.7 150 441-595 274-433 (458)
160 KOG0543 FKBP-type peptidyl-pro 98.3 1.5E-05 3.1E-10 83.1 15.3 102 500-601 256-358 (397)
161 PF08424 NRDE-2: NRDE-2, neces 98.3 3.4E-05 7.5E-10 80.8 18.5 143 352-494 5-184 (321)
162 PF12688 TPR_5: Tetratrico pep 98.3 1.9E-05 4E-10 70.2 13.9 99 466-564 3-104 (120)
163 PRK10803 tol-pal system protei 98.3 2.7E-05 5.9E-10 79.0 16.7 109 463-571 141-253 (263)
164 PF14559 TPR_19: Tetratricopep 98.3 2.2E-06 4.8E-11 67.8 6.8 67 262-328 2-68 (68)
165 PF13371 TPR_9: Tetratricopept 98.3 5E-06 1.1E-10 66.7 8.8 68 509-576 3-70 (73)
166 CHL00033 ycf3 photosystem I as 98.3 2.4E-05 5.2E-10 73.9 14.7 106 463-568 34-153 (168)
167 PF13371 TPR_9: Tetratricopept 98.2 2.5E-06 5.3E-11 68.5 6.5 63 542-604 2-64 (73)
168 PF12895 Apc3: Anaphase-promot 98.2 4.4E-06 9.6E-11 69.3 8.1 83 477-561 2-84 (84)
169 PF13525 YfiO: Outer membrane 98.2 6.6E-05 1.4E-09 73.4 17.2 141 463-603 4-175 (203)
170 PF08424 NRDE-2: NRDE-2, neces 98.2 4E-05 8.6E-10 80.4 16.6 139 307-455 7-184 (321)
171 COG4235 Cytochrome c biogenesi 98.2 4.2E-05 9.1E-10 77.1 15.5 120 441-568 138-260 (287)
172 COG5191 Uncharacterized conser 98.2 1.1E-06 2.4E-11 87.6 3.8 160 159-331 12-188 (435)
173 PF12688 TPR_5: Tetratrico pep 98.2 4.1E-05 8.9E-10 68.0 13.3 96 502-597 2-103 (120)
174 PRK04841 transcriptional regul 98.2 0.0032 6.9E-08 75.4 33.3 298 262-567 420-763 (903)
175 PRK10866 outer membrane biogen 98.1 0.00027 5.9E-09 71.0 19.8 142 463-604 31-210 (243)
176 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 6.8E-05 1.5E-09 80.1 16.2 110 439-559 183-292 (395)
177 PRK10153 DNA-binding transcrip 98.1 0.00012 2.7E-09 81.3 18.7 148 388-570 329-488 (517)
178 KOG3785 Uncharacterized conser 98.1 0.0043 9.3E-08 63.6 26.7 309 266-602 166-494 (557)
179 PRK15331 chaperone protein Sic 98.0 0.00011 2.3E-09 68.2 13.6 105 463-571 36-140 (165)
180 PRK11906 transcriptional regul 98.0 0.0002 4.3E-09 76.5 17.2 148 408-564 274-436 (458)
181 PF14938 SNAP: Soluble NSF att 98.0 0.00037 8.1E-09 71.7 18.6 180 377-566 30-227 (282)
182 PF13512 TPR_18: Tetratricopep 98.0 0.00018 3.8E-09 65.3 14.0 104 500-603 9-133 (142)
183 COG1729 Uncharacterized protei 98.0 0.00012 2.6E-09 73.0 13.3 100 504-603 144-249 (262)
184 COG3898 Uncharacterized membra 97.9 0.017 3.8E-07 60.1 28.5 271 262-564 95-392 (531)
185 PF04733 Coatomer_E: Coatomer 97.9 0.00017 3.7E-09 74.4 14.0 155 407-572 117-273 (290)
186 COG0457 NrfG FOG: TPR repeat [ 97.9 0.0052 1.1E-07 57.7 23.5 187 407-601 38-234 (291)
187 KOG0543 FKBP-type peptidyl-pro 97.9 7.4E-05 1.6E-09 77.9 10.1 117 467-605 211-327 (397)
188 KOG3617 WD40 and TPR repeat-co 97.8 0.011 2.4E-07 66.4 26.5 65 531-595 1075-1171(1416)
189 PF13428 TPR_14: Tetratricopep 97.8 4E-05 8.7E-10 55.3 5.3 42 536-577 2-43 (44)
190 KOG3617 WD40 and TPR repeat-co 97.8 0.014 2.9E-07 65.7 26.6 234 353-595 790-1106(1416)
191 PLN03098 LPA1 LOW PSII ACCUMUL 97.8 0.0001 2.2E-09 78.5 10.0 68 498-565 72-142 (453)
192 PF13428 TPR_14: Tetratricopep 97.8 6.4E-05 1.4E-09 54.2 5.8 44 285-328 1-44 (44)
193 PF13512 TPR_18: Tetratricopep 97.7 0.00098 2.1E-08 60.5 14.0 109 463-571 9-135 (142)
194 KOG4555 TPR repeat-containing 97.7 0.00058 1.3E-08 60.4 11.7 89 510-598 52-144 (175)
195 PLN03098 LPA1 LOW PSII ACCUMUL 97.6 0.00051 1.1E-08 73.3 12.4 71 461-531 72-142 (453)
196 COG4700 Uncharacterized protei 97.6 0.0016 3.5E-08 61.2 13.7 130 463-595 88-219 (251)
197 KOG3081 Vesicle coat complex C 97.6 0.0079 1.7E-07 59.7 19.0 90 514-603 186-276 (299)
198 KOG4340 Uncharacterized conser 97.6 0.0032 6.9E-08 63.2 15.9 178 372-559 20-202 (459)
199 KOG1586 Protein required for f 97.5 0.0091 2E-07 58.2 18.2 182 407-602 29-228 (288)
200 COG4700 Uncharacterized protei 97.5 0.0092 2E-07 56.2 17.4 148 407-561 71-219 (251)
201 PF06552 TOM20_plant: Plant sp 97.5 0.00049 1.1E-08 64.5 9.0 19 585-603 96-114 (186)
202 COG4105 ComL DNA uptake lipopr 97.5 0.026 5.7E-07 56.1 21.5 174 426-602 34-237 (254)
203 COG1729 Uncharacterized protei 97.5 0.0027 5.9E-08 63.5 14.8 103 436-540 152-254 (262)
204 COG5191 Uncharacterized conser 97.5 6.6E-05 1.4E-09 75.2 3.2 91 487-580 96-187 (435)
205 KOG4234 TPR repeat-containing 97.5 0.0027 5.9E-08 60.3 13.3 108 469-576 100-209 (271)
206 KOG2053 Mitochondrial inherita 97.5 0.36 7.8E-06 55.4 32.2 286 262-596 20-335 (932)
207 KOG4648 Uncharacterized conser 97.4 0.00048 1E-08 70.0 8.4 109 468-579 101-209 (536)
208 KOG1585 Protein required for f 97.4 0.018 3.8E-07 56.6 18.4 192 407-599 46-257 (308)
209 PF06552 TOM20_plant: Plant sp 97.4 0.0014 3.1E-08 61.5 10.6 93 480-575 7-120 (186)
210 KOG4234 TPR repeat-containing 97.4 0.002 4.4E-08 61.2 11.3 110 437-549 107-216 (271)
211 PF02259 FAT: FAT domain; Int 97.4 0.086 1.9E-06 55.5 25.1 139 463-601 145-341 (352)
212 COG2909 MalT ATP-dependent tra 97.3 0.47 1E-05 54.7 31.4 307 272-594 328-684 (894)
213 PF13424 TPR_12: Tetratricopep 97.3 0.00032 7E-09 56.9 4.8 63 536-598 6-75 (78)
214 KOG4555 TPR repeat-containing 97.3 0.0095 2.1E-07 52.9 14.0 94 470-566 49-146 (175)
215 COG3898 Uncharacterized membra 97.3 0.27 5.8E-06 51.6 26.5 121 469-598 268-392 (531)
216 PF04184 ST7: ST7 protein; In 97.3 0.016 3.4E-07 62.4 18.2 136 377-527 183-321 (539)
217 KOG4340 Uncharacterized conser 97.3 0.022 4.8E-07 57.3 18.0 167 350-530 28-207 (459)
218 PF13424 TPR_12: Tetratricopep 97.3 0.00092 2E-08 54.2 7.1 67 499-565 3-76 (78)
219 COG4785 NlpI Lipoprotein NlpI, 97.2 0.002 4.4E-08 61.9 9.5 100 467-569 68-167 (297)
220 PF04184 ST7: ST7 protein; In 97.2 0.017 3.7E-07 62.1 17.5 147 333-490 170-321 (539)
221 PF02259 FAT: FAT domain; Int 97.2 0.21 4.5E-06 52.5 26.2 49 500-548 251-305 (352)
222 COG4785 NlpI Lipoprotein NlpI, 97.2 0.053 1.2E-06 52.4 18.7 126 252-391 66-196 (297)
223 KOG4648 Uncharacterized conser 97.2 0.0017 3.6E-08 66.2 8.8 100 505-604 101-200 (536)
224 PF13431 TPR_17: Tetratricopep 97.1 0.00047 1E-08 46.8 3.3 32 524-555 2-33 (34)
225 PF13431 TPR_17: Tetratricopep 97.1 0.00051 1.1E-08 46.6 3.3 34 557-590 1-34 (34)
226 PF03704 BTAD: Bacterial trans 97.1 0.014 3E-07 53.4 13.8 110 469-596 11-123 (146)
227 PF07719 TPR_2: Tetratricopept 97.1 0.0015 3.2E-08 43.7 5.2 33 570-602 2-34 (34)
228 KOG4642 Chaperone-dependent E3 97.0 0.002 4.4E-08 62.8 7.2 113 479-594 25-142 (284)
229 COG4105 ComL DNA uptake lipopr 97.0 0.073 1.6E-06 53.0 18.1 141 463-603 33-201 (254)
230 KOG0890 Protein kinase of the 96.9 0.26 5.7E-06 61.9 25.9 227 375-603 1462-1737(2382)
231 KOG4642 Chaperone-dependent E3 96.9 0.017 3.7E-07 56.5 12.4 91 508-598 17-107 (284)
232 PF03704 BTAD: Bacterial trans 96.9 0.038 8.3E-07 50.5 14.5 107 437-564 18-125 (146)
233 KOG3081 Vesicle coat complex C 96.8 0.06 1.3E-06 53.6 15.8 129 466-604 109-242 (299)
234 PF07719 TPR_2: Tetratricopept 96.7 0.0045 9.7E-08 41.3 5.2 33 536-568 2-34 (34)
235 PF00515 TPR_1: Tetratricopept 96.5 0.0054 1.2E-07 41.1 4.5 31 571-601 3-33 (34)
236 PF10345 Cohesin_load: Cohesin 96.5 0.9 2E-05 52.0 25.3 313 267-593 37-428 (608)
237 KOG2053 Mitochondrial inherita 96.5 0.045 9.9E-07 62.4 14.1 103 440-551 24-126 (932)
238 PF13281 DUF4071: Domain of un 96.4 0.48 1E-05 50.3 20.8 160 439-603 155-339 (374)
239 PF08311 Mad3_BUB1_I: Mad3/BUB 96.4 0.044 9.6E-07 49.2 11.4 43 553-595 81-125 (126)
240 PF04910 Tcf25: Transcriptiona 96.4 0.12 2.6E-06 55.0 16.1 165 418-601 32-225 (360)
241 KOG0545 Aryl-hydrocarbon recep 96.3 0.11 2.4E-06 51.2 14.1 68 501-568 230-297 (329)
242 PF00515 TPR_1: Tetratricopept 96.3 0.0078 1.7E-07 40.3 4.5 32 536-567 2-33 (34)
243 PF13181 TPR_8: Tetratricopept 96.2 0.0091 2E-07 39.9 4.3 32 570-601 2-33 (34)
244 COG2976 Uncharacterized protei 96.1 0.22 4.8E-06 47.6 14.7 99 503-602 91-192 (207)
245 KOG0376 Serine-threonine phosp 96.1 0.012 2.7E-07 62.9 6.7 107 470-579 10-116 (476)
246 PF08311 Mad3_BUB1_I: Mad3/BUB 96.1 0.13 2.8E-06 46.2 12.3 111 411-528 4-126 (126)
247 smart00386 HAT HAT (Half-A-TPR 96.1 0.011 2.3E-07 38.8 4.1 31 299-329 1-31 (33)
248 KOG0376 Serine-threonine phosp 96.0 0.005 1.1E-07 65.8 3.7 97 508-604 11-107 (476)
249 KOG2610 Uncharacterized conser 95.9 0.79 1.7E-05 47.3 18.0 155 437-596 115-274 (491)
250 KOG2422 Uncharacterized conser 95.8 0.92 2E-05 49.9 19.1 51 405-455 251-314 (665)
251 PF10300 DUF3808: Protein of u 95.7 0.74 1.6E-05 50.9 18.9 178 412-598 177-376 (468)
252 KOG4507 Uncharacterized conser 95.7 0.014 2.9E-07 63.5 4.9 100 506-605 611-712 (886)
253 KOG1941 Acetylcholine receptor 95.6 1 2.3E-05 46.9 18.1 126 439-564 136-275 (518)
254 KOG1586 Protein required for f 95.6 0.76 1.6E-05 45.2 16.2 139 429-567 77-227 (288)
255 KOG1308 Hsp70-interacting prot 95.5 0.0059 1.3E-07 62.6 1.4 124 469-597 119-243 (377)
256 KOG2796 Uncharacterized conser 95.5 2.5 5.4E-05 42.4 19.3 126 407-568 192-319 (366)
257 KOG1308 Hsp70-interacting prot 95.5 0.014 3.1E-07 59.8 4.1 86 513-598 126-211 (377)
258 KOG0545 Aryl-hydrocarbon recep 95.4 0.21 4.5E-06 49.3 11.6 67 535-601 230-296 (329)
259 KOG3824 Huntingtin interacting 95.4 0.083 1.8E-06 53.5 9.2 90 240-329 104-194 (472)
260 COG3118 Thioredoxin domain-con 95.4 0.37 8.1E-06 48.9 13.8 139 437-583 146-286 (304)
261 PF13181 TPR_8: Tetratricopept 95.3 0.032 7E-07 37.1 4.3 32 536-567 2-33 (34)
262 KOG1130 Predicted G-alpha GTPa 95.3 1.5 3.3E-05 46.4 18.1 126 439-564 209-344 (639)
263 KOG2796 Uncharacterized conser 95.2 3.8 8.2E-05 41.1 19.8 222 283-541 67-329 (366)
264 smart00386 HAT HAT (Half-A-TPR 95.2 0.039 8.5E-07 36.0 4.4 29 550-578 2-30 (33)
265 KOG2300 Uncharacterized conser 95.1 6.4 0.00014 42.8 33.2 165 437-605 335-521 (629)
266 KOG1585 Protein required for f 95.0 2.2 4.7E-05 42.4 17.1 181 377-559 46-251 (308)
267 KOG3824 Huntingtin interacting 95.0 0.063 1.4E-06 54.4 6.8 113 466-581 118-235 (472)
268 KOG2422 Uncharacterized conser 94.9 2.6 5.7E-05 46.5 19.3 94 470-566 348-450 (665)
269 KOG0551 Hsp90 co-chaperone CNS 94.9 0.16 3.5E-06 52.2 9.5 91 504-594 84-178 (390)
270 KOG0530 Protein farnesyltransf 94.7 4.3 9.3E-05 40.7 18.4 161 379-547 60-233 (318)
271 PF13174 TPR_6: Tetratricopept 94.6 0.067 1.4E-06 35.1 4.3 28 539-566 4-31 (33)
272 PF10300 DUF3808: Protein of u 94.6 3.5 7.6E-05 45.6 20.2 84 409-493 250-334 (468)
273 KOG3616 Selective LIM binding 94.5 9.3 0.0002 43.4 22.3 106 475-595 802-908 (1636)
274 COG2909 MalT ATP-dependent tra 94.4 8.1 0.00018 45.0 22.5 193 406-598 429-647 (894)
275 PRK10941 hypothetical protein; 94.4 0.45 9.7E-06 48.5 11.5 70 509-578 189-258 (269)
276 PF02184 HAT: HAT (Half-A-TPR) 94.3 0.067 1.4E-06 35.4 3.4 30 266-296 2-31 (32)
277 PF13174 TPR_6: Tetratricopept 94.2 0.092 2E-06 34.4 4.2 32 571-602 2-33 (33)
278 KOG3616 Selective LIM binding 94.2 13 0.00028 42.4 24.0 100 479-592 747-847 (1636)
279 COG3118 Thioredoxin domain-con 94.1 2.4 5.2E-05 43.2 15.7 118 406-531 148-266 (304)
280 PF13281 DUF4071: Domain of un 94.1 1.2 2.7E-05 47.3 14.3 161 260-425 150-338 (374)
281 KOG0530 Protein farnesyltransf 94.1 2 4.3E-05 43.0 14.7 170 406-583 57-236 (318)
282 KOG0890 Protein kinase of the 94.0 26 0.00056 45.2 28.2 109 463-576 1669-1796(2382)
283 KOG0551 Hsp90 co-chaperone CNS 93.7 0.63 1.4E-05 47.9 10.9 101 465-565 82-183 (390)
284 PRK10941 hypothetical protein; 93.7 0.36 7.8E-06 49.2 9.3 85 244-328 174-258 (269)
285 COG2976 Uncharacterized protei 93.7 6.7 0.00015 37.7 17.0 98 468-567 93-191 (207)
286 KOG1130 Predicted G-alpha GTPa 93.3 13 0.00029 39.6 21.3 122 477-598 208-344 (639)
287 COG4976 Predicted methyltransf 93.1 0.12 2.6E-06 50.5 4.4 58 511-568 5-62 (287)
288 KOG4507 Uncharacterized conser 93.1 0.51 1.1E-05 51.8 9.5 99 475-575 618-716 (886)
289 KOG2300 Uncharacterized conser 92.9 3.2 6.9E-05 45.0 14.9 118 440-559 24-151 (629)
290 PF08631 SPO22: Meiosis protei 92.8 8.4 0.00018 39.4 18.0 124 406-532 7-152 (278)
291 PF09613 HrpB1_HrpK: Bacterial 92.7 1.9 4.2E-05 40.1 11.6 100 465-568 11-110 (160)
292 PF04910 Tcf25: Transcriptiona 92.6 3.8 8.3E-05 43.7 15.5 164 388-566 32-224 (360)
293 smart00777 Mad3_BUB1_I Mad3/BU 92.6 2.4 5.2E-05 37.9 11.7 94 426-526 22-124 (125)
294 smart00028 TPR Tetratricopepti 92.5 0.19 4.1E-06 31.4 3.6 31 571-601 3-33 (34)
295 PF13176 TPR_7: Tetratricopept 92.3 0.26 5.6E-06 33.5 4.1 25 538-562 2-26 (36)
296 PF09613 HrpB1_HrpK: Bacterial 92.1 9.2 0.0002 35.7 15.2 83 502-584 11-93 (160)
297 smart00777 Mad3_BUB1_I Mad3/BU 91.9 2 4.3E-05 38.4 10.3 40 555-594 83-124 (125)
298 PF14561 TPR_20: Tetratricopep 91.9 0.78 1.7E-05 38.5 7.4 46 522-567 9-54 (90)
299 KOG1538 Uncharacterized conser 91.8 7.7 0.00017 43.5 16.4 45 547-595 785-830 (1081)
300 PF04781 DUF627: Protein of un 91.7 1.6 3.4E-05 38.0 9.1 47 553-599 62-108 (111)
301 KOG2610 Uncharacterized conser 91.5 11 0.00023 39.3 16.1 120 472-594 111-234 (491)
302 PF02184 HAT: HAT (Half-A-TPR) 91.5 0.37 7.9E-06 32.0 3.8 29 550-579 2-30 (32)
303 smart00028 TPR Tetratricopepti 91.4 0.31 6.8E-06 30.4 3.7 31 537-567 3-33 (34)
304 PF13176 TPR_7: Tetratricopept 91.4 0.37 8E-06 32.8 4.1 29 571-599 1-29 (36)
305 KOG2041 WD40 repeat protein [G 91.3 12 0.00026 42.4 17.3 160 359-524 686-875 (1189)
306 PF04053 Coatomer_WDAD: Coatom 91.2 4.1 8.9E-05 44.7 14.1 152 406-595 275-428 (443)
307 KOG2471 TPR repeat-containing 91.1 1.5 3.3E-05 47.3 10.1 125 423-547 237-381 (696)
308 PF09986 DUF2225: Uncharacteri 91.0 1 2.3E-05 44.2 8.4 84 516-599 92-195 (214)
309 KOG1941 Acetylcholine receptor 90.8 24 0.00053 37.2 27.2 193 405-597 135-359 (518)
310 COG3947 Response regulator con 89.0 20 0.00043 36.7 15.4 56 505-560 283-338 (361)
311 PF14561 TPR_20: Tetratricopep 88.8 4.6 0.0001 33.8 9.4 48 484-534 8-55 (90)
312 KOG0889 Histone acetyltransfer 88.0 1.2E+02 0.0026 41.2 25.2 171 409-580 2671-2857(3550)
313 KOG3807 Predicted membrane pro 87.8 37 0.00081 35.3 17.0 22 553-574 380-401 (556)
314 COG4976 Predicted methyltransf 87.6 0.74 1.6E-05 45.1 4.3 60 473-535 4-63 (287)
315 COG3629 DnrI DNA-binding trans 87.5 5.8 0.00012 40.6 11.0 79 500-578 152-236 (280)
316 COG3914 Spy Predicted O-linked 87.4 7.4 0.00016 43.3 12.3 90 514-603 80-176 (620)
317 KOG3783 Uncharacterized conser 87.2 54 0.0012 36.4 22.5 62 540-601 454-523 (546)
318 PF08631 SPO22: Meiosis protei 87.1 38 0.00082 34.6 26.1 149 441-597 103-274 (278)
319 TIGR02561 HrpB1_HrpK type III 87.0 8.2 0.00018 35.5 10.4 51 514-564 23-73 (153)
320 PF10345 Cohesin_load: Cohesin 86.9 64 0.0014 37.0 25.2 183 411-594 40-250 (608)
321 PF14853 Fis1_TPR_C: Fis1 C-te 86.2 4.6 9.9E-05 30.3 7.1 31 508-538 8-38 (53)
322 PF10602 RPN7: 26S proteasome 86.2 31 0.00068 32.7 15.4 63 502-564 37-102 (177)
323 PF14853 Fis1_TPR_C: Fis1 C-te 86.0 4.9 0.00011 30.1 7.2 39 536-574 2-40 (53)
324 KOG0985 Vesicle coat protein c 86.0 86 0.0019 37.6 23.9 130 467-600 609-755 (1666)
325 KOG0276 Vesicle coat complex C 85.6 8 0.00017 43.1 11.2 80 511-595 647-747 (794)
326 KOG0985 Vesicle coat protein c 85.6 90 0.0019 37.4 26.8 187 364-568 1102-1312(1666)
327 PF09986 DUF2225: Uncharacteri 85.4 23 0.00049 34.8 13.7 64 518-581 142-212 (214)
328 KOG2471 TPR repeat-containing 85.0 3.8 8.2E-05 44.4 8.4 118 463-580 239-380 (696)
329 COG4649 Uncharacterized protei 84.4 38 0.00083 32.2 13.8 58 506-563 137-195 (221)
330 PF04781 DUF627: Protein of un 84.0 7.6 0.00017 33.8 8.4 99 437-564 8-107 (111)
331 COG3629 DnrI DNA-binding trans 83.6 6.4 0.00014 40.2 9.1 64 535-598 153-216 (280)
332 TIGR02561 HrpB1_HrpK type III 83.1 39 0.00084 31.2 13.7 75 474-551 20-94 (153)
333 PF13374 TPR_10: Tetratricopep 82.9 3 6.6E-05 28.4 4.7 29 536-564 3-31 (42)
334 KOG1464 COP9 signalosome, subu 82.9 38 0.00083 34.3 13.8 94 506-599 150-261 (440)
335 PF10602 RPN7: 26S proteasome 82.8 27 0.00059 33.2 12.7 104 463-566 35-144 (177)
336 PF11207 DUF2989: Protein of u 82.7 21 0.00044 34.7 11.6 58 425-483 140-197 (203)
337 COG2912 Uncharacterized conser 82.6 5.4 0.00012 40.4 8.0 66 510-575 190-255 (269)
338 KOG3807 Predicted membrane pro 82.3 68 0.0015 33.5 15.8 192 377-603 199-396 (556)
339 COG5159 RPN6 26S proteasome re 81.9 65 0.0014 33.0 15.3 94 505-598 129-235 (421)
340 KOG1538 Uncharacterized conser 81.4 31 0.00068 38.9 13.6 84 463-561 746-830 (1081)
341 PF12968 DUF3856: Domain of Un 80.3 42 0.00091 29.8 12.4 95 470-564 15-129 (144)
342 PF07721 TPR_4: Tetratricopept 79.9 2.2 4.8E-05 26.6 2.8 23 571-593 3-25 (26)
343 PF11207 DUF2989: Protein of u 78.9 56 0.0012 31.8 13.1 151 359-521 45-198 (203)
344 PF12862 Apc5: Anaphase-promot 78.1 12 0.00025 31.5 7.6 56 511-566 8-72 (94)
345 PRK13184 pknD serine/threonine 77.8 10 0.00023 45.3 9.5 95 510-605 484-588 (932)
346 PF07079 DUF1347: Protein of u 77.2 39 0.00085 36.7 12.5 137 435-574 16-167 (549)
347 KOG1464 COP9 signalosome, subu 76.8 91 0.002 31.7 17.2 108 424-531 139-261 (440)
348 PF13374 TPR_10: Tetratricopep 75.8 7 0.00015 26.5 4.8 29 570-598 3-31 (42)
349 TIGR03504 FimV_Cterm FimV C-te 75.5 4.8 0.0001 28.9 3.7 25 573-597 3-27 (44)
350 KOG3364 Membrane protein invol 75.5 26 0.00056 31.8 9.1 72 500-571 31-107 (149)
351 PF07720 TPR_3: Tetratricopept 75.0 10 0.00022 25.9 5.1 20 538-557 4-23 (36)
352 KOG1310 WD40 repeat protein [G 74.2 8.7 0.00019 42.2 6.9 85 481-568 391-478 (758)
353 PF04053 Coatomer_WDAD: Coatom 73.5 22 0.00048 39.0 10.1 115 472-597 269-401 (443)
354 KOG4814 Uncharacterized conser 73.3 64 0.0014 36.6 13.2 93 506-598 359-457 (872)
355 PF12862 Apc5: Anaphase-promot 72.1 15 0.00033 30.8 6.7 55 546-600 9-72 (94)
356 COG4941 Predicted RNA polymera 71.9 1.4E+02 0.0029 31.5 15.9 88 479-570 311-400 (415)
357 KOG0529 Protein geranylgeranyl 71.7 1.2E+02 0.0026 32.7 14.4 23 378-400 45-67 (421)
358 KOG3364 Membrane protein invol 71.6 43 0.00092 30.4 9.5 75 463-539 31-109 (149)
359 COG2912 Uncharacterized conser 71.1 14 0.00029 37.5 7.1 63 261-323 191-253 (269)
360 smart00101 14_3_3 14-3-3 homol 70.5 1.2E+02 0.0027 30.4 17.6 48 551-598 144-200 (244)
361 PF07720 TPR_3: Tetratricopept 70.3 15 0.00033 25.0 5.1 33 570-602 2-36 (36)
362 PHA02537 M terminase endonucle 70.2 30 0.00066 34.3 9.3 92 511-602 93-211 (230)
363 KOG1550 Extracellular protein 69.5 2E+02 0.0044 32.5 19.4 80 479-565 308-394 (552)
364 PF10579 Rapsyn_N: Rapsyn N-te 67.7 31 0.00068 28.1 7.1 46 511-556 16-64 (80)
365 COG3914 Spy Predicted O-linked 67.5 1.6E+02 0.0034 33.2 14.7 123 414-544 53-185 (620)
366 PF15297 CKAP2_C: Cytoskeleton 66.5 12 0.00025 39.2 5.7 46 409-454 120-169 (353)
367 KOG1310 WD40 repeat protein [G 65.4 23 0.0005 39.1 7.7 87 441-535 390-479 (758)
368 PF09670 Cas_Cas02710: CRISPR- 65.3 1.2E+02 0.0026 32.5 13.5 22 509-530 177-198 (379)
369 PTZ00046 rifin; Provisional 64.8 9.9 0.00021 40.0 4.8 50 99-148 66-117 (358)
370 PF09205 DUF1955: Domain of un 64.5 1.1E+02 0.0025 27.8 15.0 55 543-597 94-148 (161)
371 COG3947 Response regulator con 63.8 22 0.00048 36.4 6.9 58 538-595 282-339 (361)
372 PRK15180 Vi polysaccharide bio 62.2 57 0.0012 35.7 9.9 54 513-566 369-422 (831)
373 PF00244 14-3-3: 14-3-3 protei 62.2 1.7E+02 0.0037 29.1 17.9 48 551-598 142-198 (236)
374 PF07721 TPR_4: Tetratricopept 61.8 10 0.00023 23.5 2.8 23 537-559 3-25 (26)
375 smart00299 CLH Clathrin heavy 61.6 73 0.0016 28.4 9.6 39 473-514 16-54 (140)
376 PF09205 DUF1955: Domain of un 59.4 56 0.0012 29.7 7.8 56 509-564 94-149 (161)
377 PF12854 PPR_1: PPR repeat 58.7 21 0.00045 23.8 4.0 24 536-559 8-31 (34)
378 PF04190 DUF410: Protein of un 58.6 94 0.002 31.5 10.7 24 569-592 90-113 (260)
379 TIGR01477 RIFIN variant surfac 58.5 13 0.00028 39.0 4.4 50 99-148 69-120 (353)
380 COG4455 ImpE Protein of avirul 58.2 59 0.0013 32.1 8.4 121 471-602 8-138 (273)
381 PF13041 PPR_2: PPR repeat fam 56.2 48 0.001 23.8 6.0 29 536-564 4-32 (50)
382 COG4649 Uncharacterized protei 56.1 1.9E+02 0.0041 27.7 16.7 93 504-596 97-194 (221)
383 PF11846 DUF3366: Domain of un 54.9 39 0.00085 32.3 6.9 49 517-566 127-175 (193)
384 PF15015 NYD-SP12_N: Spermatog 54.7 3.2E+02 0.0069 29.8 14.3 21 437-457 188-208 (569)
385 COG3107 LppC Putative lipoprot 54.2 3.6E+02 0.0077 30.3 15.0 38 534-571 201-239 (604)
386 PF12854 PPR_1: PPR repeat 53.2 34 0.00073 22.7 4.3 27 568-594 6-32 (34)
387 COG1747 Uncharacterized N-term 53.1 3.7E+02 0.008 30.1 19.1 75 411-493 85-160 (711)
388 KOG1463 26S proteasome regulat 52.8 3E+02 0.0066 29.0 21.8 176 349-532 120-318 (411)
389 PRK15338 type III secretion sy 52.7 3.2E+02 0.0069 29.2 16.6 46 481-530 184-229 (372)
390 PF10516 SHNi-TPR: SHNi-TPR; 52.5 31 0.00067 23.9 4.1 28 537-564 3-30 (38)
391 KOG2581 26S proteasome regulat 52.3 2.8E+02 0.0061 30.0 12.8 102 465-568 170-280 (493)
392 KOG2581 26S proteasome regulat 50.8 2.6E+02 0.0057 30.2 12.3 104 500-603 168-281 (493)
393 KOG0276 Vesicle coat complex C 50.5 2.1E+02 0.0046 32.4 12.0 64 383-451 628-692 (794)
394 PF01535 PPR: PPR repeat; Int 50.2 24 0.00052 22.0 3.2 25 538-562 3-27 (31)
395 TIGR03504 FimV_Cterm FimV C-te 49.8 32 0.00069 24.7 4.0 24 506-529 4-27 (44)
396 PF12968 DUF3856: Domain of Un 49.7 1.9E+02 0.0042 25.8 12.9 91 508-598 16-129 (144)
397 COG0790 FOG: TPR repeat, SEL1 49.6 2.9E+02 0.0063 27.9 22.8 76 519-599 173-267 (292)
398 KOG2041 WD40 repeat protein [G 48.9 4.9E+02 0.011 30.3 14.8 60 500-559 808-876 (1189)
399 PRK15490 Vi polysaccharide bio 48.7 1.1E+02 0.0023 34.8 9.8 79 476-559 20-98 (578)
400 KOG0529 Protein geranylgeranyl 48.5 3.9E+02 0.0083 28.9 17.0 98 480-580 91-194 (421)
401 PRK12798 chemotaxis protein; R 48.0 4E+02 0.0086 29.0 22.4 180 377-561 127-321 (421)
402 PF10373 EST1_DNA_bind: Est1 D 47.7 59 0.0013 32.6 7.3 42 521-562 2-43 (278)
403 PF11846 DUF3366: Domain of un 46.3 76 0.0016 30.3 7.4 46 483-532 130-175 (193)
404 KOG1550 Extracellular protein 45.7 5E+02 0.011 29.4 27.2 212 377-601 308-541 (552)
405 PF15297 CKAP2_C: Cytoskeleton 44.3 97 0.0021 32.6 8.0 28 466-493 142-169 (353)
406 cd02680 MIT_calpain7_2 MIT: do 44.3 37 0.0008 27.5 4.0 35 266-315 2-36 (75)
407 cd02680 MIT_calpain7_2 MIT: do 44.2 38 0.00083 27.4 4.1 19 547-565 18-36 (75)
408 KOG1839 Uncharacterized protei 43.9 1.2E+02 0.0026 37.2 9.7 130 469-599 937-1087(1236)
409 PRK15180 Vi polysaccharide bio 43.8 3E+02 0.0066 30.4 11.7 126 408-541 305-431 (831)
410 TIGR02996 rpt_mate_G_obs repea 43.6 54 0.0012 23.3 4.1 32 557-588 4-35 (42)
411 COG4455 ImpE Protein of avirul 43.6 2.3E+02 0.005 28.1 9.8 57 435-496 11-67 (273)
412 TIGR00756 PPR pentatricopeptid 43.2 47 0.001 21.0 3.9 27 538-564 3-29 (35)
413 PRK15490 Vi polysaccharide bio 42.7 1.5E+02 0.0032 33.7 9.7 79 437-525 20-98 (578)
414 PF11817 Foie-gras_1: Foie gra 42.5 2E+02 0.0042 28.8 10.0 59 536-594 179-243 (247)
415 KOG1497 COP9 signalosome, subu 41.9 1.7E+02 0.0037 30.5 9.1 83 242-325 94-186 (399)
416 KOG1463 26S proteasome regulat 41.8 4.5E+02 0.0098 27.8 14.2 93 506-598 133-238 (411)
417 PF10516 SHNi-TPR: SHNi-TPR; 41.7 56 0.0012 22.6 4.0 28 503-530 3-30 (38)
418 PF10579 Rapsyn_N: Rapsyn N-te 41.1 1.2E+02 0.0027 24.8 6.5 45 547-591 18-65 (80)
419 TIGR01987 HI0074 nucleotidyltr 40.5 1.6E+02 0.0035 26.2 7.9 42 287-328 41-87 (123)
420 PRK13184 pknD serine/threonine 40.4 2.5E+02 0.0055 33.9 11.7 124 478-602 489-624 (932)
421 PF12531 DUF3731: DNA-K relate 40.0 4.1E+02 0.0088 26.8 14.3 154 282-440 2-193 (249)
422 KOG4814 Uncharacterized conser 39.8 3.1E+02 0.0067 31.4 11.3 99 465-564 356-457 (872)
423 KOG1920 IkappaB kinase complex 39.1 8.4E+02 0.018 30.2 22.6 18 441-458 889-906 (1265)
424 KOG4014 Uncharacterized conser 39.0 3.7E+02 0.008 26.0 12.0 50 549-598 182-233 (248)
425 PF01239 PPTA: Protein prenylt 38.7 95 0.0021 19.9 4.7 27 521-547 3-29 (31)
426 TIGR01987 HI0074 nucleotidyltr 38.1 2.9E+02 0.0063 24.6 10.1 17 300-316 4-20 (123)
427 PF13041 PPR_2: PPR repeat fam 37.9 1.4E+02 0.0031 21.2 6.1 30 501-530 3-32 (50)
428 PF14863 Alkyl_sulf_dimr: Alky 37.7 1.1E+02 0.0024 28.0 6.5 48 502-549 71-118 (141)
429 KOG2114 Vacuolar assembly/sort 37.6 5.3E+02 0.012 30.5 13.1 28 465-492 369-396 (933)
430 PF09797 NatB_MDM20: N-acetylt 36.7 3.8E+02 0.0082 28.4 11.6 43 480-525 199-241 (365)
431 PF00244 14-3-3: 14-3-3 protei 35.9 4.5E+02 0.0097 26.1 14.4 29 288-316 4-32 (236)
432 PF09797 NatB_MDM20: N-acetylt 35.5 1.1E+02 0.0025 32.4 7.4 45 517-561 199-243 (365)
433 cd02684 MIT_2 MIT: domain cont 34.1 2E+02 0.0044 23.0 6.9 33 267-314 3-35 (75)
434 PF11817 Foie-gras_1: Foie gra 33.8 4.3E+02 0.0092 26.3 10.8 51 441-491 154-205 (247)
435 KOG1839 Uncharacterized protei 33.3 5E+02 0.011 32.2 12.6 136 463-598 972-1128(1236)
436 KOG0292 Vesicle coat complex C 32.8 1.2E+02 0.0026 35.8 7.0 18 581-598 765-782 (1202)
437 PHA02537 M terminase endonucle 32.2 5E+02 0.011 25.9 10.6 93 476-568 95-211 (230)
438 PF04190 DUF410: Protein of un 31.0 5.7E+02 0.012 25.8 19.1 144 437-598 22-170 (260)
439 PRK14700 recombination factor 30.9 6.2E+02 0.014 26.2 17.5 47 531-577 178-226 (300)
440 PF09670 Cas_Cas02710: CRISPR- 30.9 6.9E+02 0.015 26.8 13.3 51 404-454 143-198 (379)
441 PRK12798 chemotaxis protein; R 29.6 7.7E+02 0.017 26.8 21.3 184 407-593 127-319 (421)
442 PF13812 PPR_3: Pentatricopept 29.2 1.4E+02 0.003 18.8 4.4 25 538-562 4-28 (34)
443 PF06957 COPI_C: Coatomer (COP 29.0 1.6E+02 0.0034 32.2 7.0 24 435-458 214-237 (422)
444 cd02682 MIT_AAA_Arch MIT: doma 28.8 3.1E+02 0.0068 22.1 7.3 21 507-527 12-32 (75)
445 COG5159 RPN6 26S proteasome re 28.4 6.8E+02 0.015 25.9 13.2 19 473-491 134-152 (421)
446 cd00280 TRFH Telomeric Repeat 28.2 5E+02 0.011 25.0 9.3 70 480-550 85-159 (200)
447 cd00280 TRFH Telomeric Repeat 28.1 5E+02 0.011 25.0 9.2 55 441-496 85-142 (200)
448 PF09477 Type_III_YscG: Bacter 27.8 4.2E+02 0.009 23.2 10.9 17 577-593 77-93 (116)
449 PF14929 TAF1_subA: TAF RNA Po 27.5 9.5E+02 0.021 27.2 15.4 124 266-404 273-419 (547)
450 PF10373 EST1_DNA_bind: Est1 D 27.4 2.1E+02 0.0046 28.5 7.5 61 483-547 1-62 (278)
451 TIGR03274 methan_mark_7 putati 26.8 34 0.00074 34.5 1.4 24 4-27 160-183 (302)
452 PF04212 MIT: MIT (microtubule 26.5 3E+02 0.0066 21.2 6.9 34 291-331 11-44 (69)
453 cd02683 MIT_1 MIT: domain cont 26.4 2.8E+02 0.0061 22.4 6.5 34 295-335 16-49 (77)
454 PF06787 UPF0254: Uncharacteri 26.2 26 0.00056 32.2 0.4 13 22-34 106-118 (160)
455 COG4941 Predicted RNA polymera 25.9 8.2E+02 0.018 26.0 18.7 152 379-537 213-401 (415)
456 cd02684 MIT_2 MIT: domain cont 25.9 1.2E+02 0.0026 24.4 4.2 17 548-564 19-35 (75)
457 TIGR03362 VI_chp_7 type VI sec 25.8 3.7E+02 0.008 27.9 8.8 62 469-530 218-279 (301)
458 PF14929 TAF1_subA: TAF RNA Po 25.4 7E+02 0.015 28.3 11.5 76 516-595 359-438 (547)
459 COG4016 Uncharacterized protei 25.2 30 0.00065 31.0 0.6 16 19-34 104-119 (165)
460 cd02682 MIT_AAA_Arch MIT: doma 25.2 3.6E+02 0.0077 21.8 6.7 26 467-492 9-34 (75)
461 KOG0686 COP9 signalosome, subu 25.1 3.3E+02 0.0071 29.5 8.2 91 502-592 151-252 (466)
462 PRK15338 type III secretion sy 24.9 7.8E+02 0.017 26.3 11.0 116 443-565 107-230 (372)
463 PF02064 MAS20: MAS20 protein 24.3 1.5E+02 0.0032 26.3 4.9 30 505-534 67-96 (121)
464 PF10255 Paf67: RNA polymerase 24.1 6.2E+02 0.013 27.5 10.4 96 500-595 163-267 (404)
465 PF12739 TRAPPC-Trs85: ER-Golg 23.5 9.6E+02 0.021 25.9 16.4 31 569-599 369-400 (414)
466 PF08780 NTase_sub_bind: Nucle 23.3 2.4E+02 0.0053 25.0 6.1 103 300-402 5-122 (124)
467 KOG0292 Vesicle coat complex C 22.3 1E+02 0.0023 36.2 4.3 103 472-595 651-753 (1202)
468 KOG4014 Uncharacterized conser 22.2 4.7E+02 0.01 25.3 7.8 83 514-599 48-142 (248)
469 COG1659 Uncharacterized protei 22.1 36 0.00077 33.0 0.5 17 145-161 4-20 (267)
470 smart00299 CLH Clathrin heavy 22.0 5.5E+02 0.012 22.5 14.5 27 515-546 110-136 (140)
471 PHA02334 hypothetical protein 21.9 2.3E+02 0.005 21.5 4.6 23 352-374 10-32 (64)
472 PF04840 Vps16_C: Vps16, C-ter 21.8 9.2E+02 0.02 25.1 23.2 228 351-594 15-262 (319)
473 TIGR02996 rpt_mate_G_obs repea 21.7 2.3E+02 0.005 20.2 4.3 32 273-304 4-35 (42)
474 PF04212 MIT: MIT (microtubule 20.6 2.1E+02 0.0046 22.1 4.7 20 510-529 14-33 (69)
475 KOG1811 Predicted Zn2+-binding 20.5 9.1E+02 0.02 27.6 10.7 42 500-541 586-628 (1141)
476 PF07219 HemY_N: HemY protein 20.5 1.7E+02 0.0038 25.1 4.5 37 264-300 72-108 (108)
477 KOG1811 Predicted Zn2+-binding 20.4 1.9E+02 0.0042 32.6 5.6 69 533-601 585-656 (1141)
478 cd02679 MIT_spastin MIT: domai 20.0 2E+02 0.0043 23.5 4.4 16 549-564 22-37 (79)
No 1
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=100.00 E-value=5.8e-148 Score=1158.05 Aligned_cols=596 Identities=56% Similarity=0.915 Sum_probs=564.2
Q ss_pred ccccCCCCCCCCCCCCCCccCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 007407 3 MLGSKGRLDFLNSKPPANYIAGAGRGASSFTTRSDIGRTRTAPPSTIIGLPRPKPRDDDGEDDNDDDGNNGYQQNFDHFE 82 (605)
Q Consensus 3 ~~~~~~~~~fl~~~~p~~yv~g~grga~gf~tr~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (605)
.++++.|++||+|+||+|||||||||||||||||||||||++|+.+. +.++|.+| ..++|++++++.+||+|+
T Consensus 8 ~~~~~~r~~Fl~~~pP~gYVaGlGRGATGFTTRsdigpArd~~~~~~-~~~~~~~~------~~e~d~e~~~~~~ydefe 80 (913)
T KOG0495|consen 8 AAMNKPRPDFLGMPPPSGYVAGLGRGATGFTTRSDIGPARDAPDLPS-GKAAPEKR------KSEDDEEDDNDINYDEFE 80 (913)
T ss_pred cccCCCCccccCCCCCCCcCCCcCCCccCccchhhcCcccCCcccCC-Cccchhhh------hccchhhhcccCCccccc
Confidence 46779999999999999999999999999999999999998875431 11112111 112334577899999999
Q ss_pred CCCCCCCCCCCCCCccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCChhhhhHHhhhccCCCCHHHhccCCc
Q 007407 83 GNDAGLFVNLEYDDEDKEADAVWESIDKLMDSRRKSRREARLEEEIKNYRYKNPTIREEFADLKGKLSTVKAKEWERIPE 162 (605)
Q Consensus 83 ~~~~~~~~~~~~~~~d~ead~i~~~id~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~qf~dlkr~l~~v~~~~w~~~pe 162 (605)
||++|||++++||+||+|||+||++||.|||+|||+|||+++++++|+|+.++||||+||+||||+|++||+|||.+|||
T Consensus 81 g~~~~lfa~~pyD~eDeEAd~Iy~sid~rld~rrK~rre~k~ke~iE~y~~e~pkv~~QFaDLKr~LatvTe~EW~~IPE 160 (913)
T KOG0495|consen 81 GNDGSLFASAPYDDEDEEADAIYDSIDLRLDERRKERREKKLKEEIEKYRKENPKVQQQFADLKRKLATVTEDEWDSIPE 160 (913)
T ss_pred cccchhhcCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHhhcCHHHhhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhhhc-ccccccccchhHhHhhhhhhccccccCCCcccC-CCCcccccchhhhhhhhhhhhhhhccccccccCC
Q 007407 163 IGDYSRRNKRK-RFDSFVPVPDSLLQKARQEQQHVIALDPSSRAA-GGAESVVTDLTAVGEGRGKILTLKLDGISDSVTG 240 (605)
Q Consensus 163 ~~d~~~~~~~~-~~~~~~~~pd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~i~~~R~~~l~~kld~~~~~~~~ 240 (605)
+||+++||||+ |.|+|||+|||+++++.+.++..+++|+.++.. .-..+.++...+||++|++|++.+|++++++++|
T Consensus 161 vgD~r~r~krn~r~Ekf~p~pds~~~~~~~~~~~~~~ld~~~g~etp~~~g~~t~~~kig~ar~~l~~~kl~qvsdsvtg 240 (913)
T KOG0495|consen 161 VGDYRNRNKRNPRAEKFTPVPDSLLASAINENEDSSSLDPEGGLETPLQSGQMTPGVKIGQARNTLMDMKLNQVSDSVTG 240 (913)
T ss_pred ccchhhhhhccchhhhcCCCchHHHHHhcccCccccccCccCCccCCCcCCCcCccchhhHHHHHHHhhhhhhccccCCC
Confidence 99999999998 889999999999999999999999999984332 1111245667799999999999999999999999
Q ss_pred ccccCchhHHhhhhhhcccchhhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHH
Q 007407 241 LTVFDPSGYLTRMNDLKITTNSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNED 320 (605)
Q Consensus 241 ~~~~dp~~yl~~L~~~~~~~~~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~ 320 (605)
++++||+||||+|++|...+...++|+++||.+|++++++||+||++||++||+|+..|+++.|+++|++||+.||+|++
T Consensus 241 qtvvDpkgYLtdL~sm~p~~~~dl~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeD 320 (913)
T KOG0495|consen 241 QTVVDPKGYLTDLNSMIPTSGGDLEDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSED 320 (913)
T ss_pred CcccCchHHHhHHHhcCCCccCcHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCchhHHHHHHHHHhhCCCc--------------HHHHHHHHHHHHhCCCcHHHHHHHHHhCCHHHHHHHHH
Q 007407 321 VWLEACRLARPDEAKSVVAKGVRQIPKS--------------ANKIRALRMALDEIPDSVRLWKALVEISSEEEARILLH 386 (605)
Q Consensus 321 lwle~a~L~~~~~Ak~~l~~al~~~P~s--------------~~a~~vl~kAle~~P~~~~lw~~l~~le~~e~A~~~l~ 386 (605)
+||+++||+.++.||.++++|++++|+| .++++|++|||+++|+|++||+..++|+++++|+++|.
T Consensus 321 vWLeaiRLhp~d~aK~vvA~Avr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaAVelE~~~darilL~ 400 (913)
T KOG0495|consen 321 VWLEAIRLHPPDVAKTVVANAVRFLPTSVRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKAAVELEEPEDARILLE 400 (913)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHHHhccChHHHHHHHH
Confidence 9999999999999999999999999999 56899999999999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHH
Q 007407 387 RAVECCPLDVELWLALVRLETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRD 465 (605)
Q Consensus 387 rAl~~~P~~~~lw~aLa~le~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~ 465 (605)
|||+|||.+.++|++|++|+.|++|+++||++++.+|++++||+.+++|| .+|+.+++.+++.+++..+..+|+..+++
T Consensus 401 rAveccp~s~dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rd 480 (913)
T KOG0495|consen 401 RAVECCPQSMDLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRD 480 (913)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHH
Confidence 99999999999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 007407 466 TWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLE 545 (605)
Q Consensus 466 ~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~ 545 (605)
.|++.|+.|+..|.+.+|++|++.+|.++.++++...+|+..++.+...+.+++||++|.++|+.||.+.++|..+++++
T Consensus 481 qWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~e 560 (913)
T KOG0495|consen 481 QWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFE 560 (913)
T ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence 99999999999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCCCC
Q 007407 546 KSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSEEI 605 (605)
Q Consensus 546 ~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~~I 605 (605)
..||..++...+|++|+.+||+.+.+|+||++.+|..||+..||.+|.+||+.+|+|++|
T Consensus 561 k~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseei 620 (913)
T KOG0495|consen 561 KSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEI 620 (913)
T ss_pred HhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHH
Confidence 999999999999999999999999999999999999999999999999999999999876
No 2
>PF06424 PRP1_N: PRP1 splicing factor, N-terminal; InterPro: IPR010491 This domain is specific to the N-terminal part of the prp1 splicing factor, which is involved in mRNA splicing (and possibly also poly(A)+ RNA nuclear export and cell cycle progression). This domain is specific to the N terminus of the RNA splicing factor encoded by prp1 []. It is involved in mRNA splicing and possibly also poly(A)and RNA nuclear export and cell cycle progression.; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005634 nucleus
Probab=100.00 E-value=1e-58 Score=407.26 Aligned_cols=133 Identities=56% Similarity=0.988 Sum_probs=121.0
Q ss_pred CCCCccCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 007407 17 PPANYIAGAGRGASSFTTRSDIGRTRTAPPSTIIGLPRPKPRDDDGEDDNDDDGNNGYQQNFDHFEGNDAGLFVNLEYDD 96 (605)
Q Consensus 17 ~p~~yv~g~grga~gf~tr~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (605)
||||||||||||||||||||||||+|.++.. ..+++++.++.+|++ +++.|||+.++||+
T Consensus 1 pPpgYVaGlGRGAtGFtTrsdiGpar~~~~~------------------~~~~~~~~~~~~~~~--~~~~~lf~~~~yD~ 60 (133)
T PF06424_consen 1 PPPGYVAGLGRGATGFTTRSDIGPAREGPDD------------------EEDDEEDDDDERFDD--GYNEGLFASGPYDD 60 (133)
T ss_pred CCCCcCCCcccCCcCCCCcccCCcccccccc------------------ccccccccchhhcCc--ccccccccCCCCcc
Confidence 8999999999999999999999999876521 023334556788886 56679999999999
Q ss_pred ccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCChhhhhHHhhhccCCCCHHHhccCCccccchhh
Q 007407 97 EDKEADAVWESIDKLMDSRRKSRREARLEEEIKNYRYKNPTIREEFADLKGKLSTVKAKEWERIPEIGDYSRR 169 (605)
Q Consensus 97 ~d~ead~i~~~id~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~qf~dlkr~l~~v~~~~w~~~pe~~d~~~~ 169 (605)
||+|||+||++||+||++|||++||.++++++++++.++|||++||+||||+|++||++||+|||||||||+|
T Consensus 61 dD~EAD~Iy~~ID~rmd~Rrk~~re~~~~~e~e~~~~~~pkI~~QFaDLKR~La~VS~eeW~~IPE~GD~t~k 133 (133)
T PF06424_consen 61 DDEEADRIYESIDRRMDSRRKKRREAREKEEIEKYRKENPKIQQQFADLKRSLATVSEEEWENIPEAGDYTRK 133 (133)
T ss_pred chHHHHHHHHHHHHHHHhcccchhhhhhhhHHHhhhccCchHHHHHHHHHHHHccCCHHHHhcCCcccccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986
No 3
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=100.00 E-value=1e-38 Score=336.11 Aligned_cols=386 Identities=23% Similarity=0.394 Sum_probs=335.3
Q ss_pred ccccCCCcccCCC---CcccccchhhhhhhhhhhhhhhccccccccCCccccCchhHHhhhhhhcccchhhhccHHHHHH
Q 007407 196 VIALDPSSRAAGG---AESVVTDLTAVGEGRGKILTLKLDGISDSVTGLTVFDPSGYLTRMNDLKITTNSELRDILKARK 272 (605)
Q Consensus 196 ~~~~~~~~~~~~~---~~~~~~~l~~i~~~R~~~l~~kld~~~~~~~~~~~~dp~~yl~~L~~~~~~~~~~~gd~~kAr~ 272 (605)
.|++||.|..++- ..++.-||..|-.+|--+-+ +...-+.+|.||+++... +...|++..||.
T Consensus 241 qtvvDpkgYLtdL~sm~p~~~~dl~DikKaR~llKS---------vretnP~hp~gWIAsArL-----EEvagKl~~Ar~ 306 (913)
T KOG0495|consen 241 QTVVDPKGYLTDLNSMIPTSGGDLEDIKKARLLLKS---------VRETNPKHPPGWIASARL-----EEVAGKLSVARN 306 (913)
T ss_pred CcccCchHHHhHHHhcCCCccCcHHHHHHHHHHHHH---------HHhcCCCCCchHHHHHHH-----HHHhhHHHHHHH
Confidence 4667777655421 11233466677776654443 333345688899887753 578899999999
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcCc-hhHHHHHHHHHhhCCCc---
Q 007407 273 IVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLARP-DEAKSVVAKGVRQIPKS--- 348 (605)
Q Consensus 273 ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~~-~~Ak~~l~~al~~~P~s--- 348 (605)
++.+.++.+|.+.+.|+..+||. ..+.|+.++.++++.+|+|+.+|+.++.|+.. .+-+.++++||+++|.|
T Consensus 307 ~I~~GCe~cprSeDvWLeaiRLh----p~d~aK~vvA~Avr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~L 382 (913)
T KOG0495|consen 307 LIMKGCEECPRSEDVWLEAIRLH----PPDVAKTVVANAVRFLPTSVRLWLKAADLESDTKNKKRVLRKALEHIPRSVRL 382 (913)
T ss_pred HHHHHHhhCCchHHHHHHHHhcC----ChHHHHHHHHHHHHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHH
Confidence 99999999999999999999996 66779999999999999999999999999977 45668999999999999
Q ss_pred ----------HHHHHHHHHHHHhCCCcHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhc-----------
Q 007407 349 ----------ANKIRALRMALDEIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALVRLET----------- 407 (605)
Q Consensus 349 ----------~~a~~vl~kAle~~P~~~~lw~~l~~le~~e~A~~~l~rAl~~~P~~~~lw~aLa~le~----------- 407 (605)
..++.+|.+|++++|.|.+||.+|++|+.|+.|+++|++|-+.+|++.++|+.-++|++
T Consensus 383 WKaAVelE~~~darilL~rAveccp~s~dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~ki 462 (913)
T KOG0495|consen 383 WKAAVELEEPEDARILLERAVECCPQSMDLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKI 462 (913)
T ss_pred HHHHHhccChHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHH
Confidence 45899999999999999999999999999999999999999999999999998888763
Q ss_pred ---------------------------------------------------------------------HHHHHHHHHHH
Q 007407 408 ---------------------------------------------------------------------YGVARSVLNKA 418 (605)
Q Consensus 408 ---------------------------------------------------------------------~e~A~~vL~~a 418 (605)
.+-|+.||..+
T Consensus 463 i~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~a 542 (913)
T KOG0495|consen 463 IDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHA 542 (913)
T ss_pred HHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHH
Confidence 12377899999
Q ss_pred HHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 007407 419 RKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDE 497 (605)
Q Consensus 419 l~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~ 497 (605)
++.+|.+..+|..++.++ ..|..+....+|++++...|+. ...|+++|...-..|++-.|+.|+..++..+|++
T Consensus 543 lqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pka-----e~lwlM~ake~w~agdv~~ar~il~~af~~~pns 617 (913)
T KOG0495|consen 543 LQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKA-----EILWLMYAKEKWKAGDVPAARVILDQAFEANPNS 617 (913)
T ss_pred HhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcc-----hhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCc
Confidence 999999999999999999 9999999999999999999874 4589999988888899999999999988887772
Q ss_pred h------------------------------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 007407 498 E------------------------------DKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKS 547 (605)
Q Consensus 498 ~------------------------------~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~ 547 (605)
+ ....+|+..+.+..-.++.++|+.+++++|+.||+...+|+.+|+++.+
T Consensus 618 eeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~ 697 (913)
T KOG0495|consen 618 EEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQ 697 (913)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHH
Confidence 1 1235788888888888899999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCCC
Q 007407 548 YGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSEE 604 (605)
Q Consensus 548 ~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~~ 604 (605)
.++.+.|++.|..++..||++..+|+.++++..+.|++-+||.||++|.-.||++..
T Consensus 698 ~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~ 754 (913)
T KOG0495|consen 698 MENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNAL 754 (913)
T ss_pred HHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcch
Confidence 999999999999999999999999999999999999999999999999999999874
No 4
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.96 E-value=2e-27 Score=249.82 Aligned_cols=353 Identities=15% Similarity=0.092 Sum_probs=315.9
Q ss_pred cccCchhHHhhhhhhcccchhhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHH
Q 007407 242 TVFDPSGYLTRMNDLKITTNSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDV 321 (605)
Q Consensus 242 ~~~dp~~yl~~L~~~~~~~~~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~l 321 (605)
+.++|.+--+ .+..+....+.|+++.|..+|+.+++..|++.++||.+|..+...|+...|...+.++++.+|....+
T Consensus 109 ~r~~~q~ae~--ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca 186 (966)
T KOG4626|consen 109 IRKNPQGAEA--YSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCA 186 (966)
T ss_pred hhccchHHHH--HHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhh
Confidence 3456665422 23234446788999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHhhcC----chhHHHHHHHHHhhCCCc-----------------HHHHHHHHHHHHhCCCcHHHHHHHHHhC----
Q 007407 322 WLEACRLAR----PDEAKSVVAKGVRQIPKS-----------------ANKIRALRMALDEIPDSVRLWKALVEIS---- 376 (605)
Q Consensus 322 wle~a~L~~----~~~Ak~~l~~al~~~P~s-----------------~~a~~vl~kAle~~P~~~~lw~~l~~le---- 376 (605)
.-....|.. ..+|+..|.+|++..|.- -.+...|++|+...|+-...+..+.+..
T Consensus 187 ~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~ 266 (966)
T KOG4626|consen 187 RSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEAR 266 (966)
T ss_pred hcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHh
Confidence 777766654 268999999999998865 3578889999999999999998887654
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHhh----cHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHcCCHHHHHHHHHHH
Q 007407 377 SEEEARILLHRAVECCPLDVELWLALVRLE----TYGVARSVLNKARKKLPKERAIWIAAAK-LEANGNTSMVGKIIERG 451 (605)
Q Consensus 377 ~~e~A~~~l~rAl~~~P~~~~lw~aLa~le----~~e~A~~vL~~al~~~p~~~~iwi~~a~-Le~~g~~~~a~~i~~~a 451 (605)
.++.|...|.+|+...|.+..++-.++.++ ..+-|+..|++++...|..++++.+++. |...|++.++...|.+|
T Consensus 267 ~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 267 IFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred cchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 679999999999999999988877776543 5788999999999999999999999996 44889999999999999
Q ss_pred HHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 007407 452 IRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVF 531 (605)
Q Consensus 452 l~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~ 531 (605)
+...|. ..+....++.++...|.++.|..+|..++...|+ .......+|.++.++|++++|+.+|+.|+++.
T Consensus 347 L~l~p~-----hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~---~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~ 418 (966)
T KOG4626|consen 347 LRLCPN-----HADAMNNLGNIYREQGKIEEATRLYLKALEVFPE---FAAAHNNLASIYKQQGNLDDAIMCYKEALRIK 418 (966)
T ss_pred HHhCCc-----cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh---hhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC
Confidence 999876 4667888999999999999999999999999998 88888999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCCC
Q 007407 532 LTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSEE 604 (605)
Q Consensus 532 P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~~ 604 (605)
|+...++..+|..+...|+...|+..|.+|+..+|...+.+-.+|.++-..|++.+|...|+.|+++.|+.++
T Consensus 419 P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpd 491 (966)
T KOG4626|consen 419 PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPD 491 (966)
T ss_pred chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCch
Confidence 9999999999999999999999999999999999999999999999998899999999999999999999875
No 5
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=3.7e-25 Score=227.04 Aligned_cols=332 Identities=18% Similarity=0.281 Sum_probs=226.4
Q ss_pred cchhhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcC----chhH
Q 007407 259 TTNSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLAR----PDEA 334 (605)
Q Consensus 259 ~~~~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~----~~~A 334 (605)
+.+...+++.+||.+|++++..+-.+.+.|+.+|.++++++.+..||+++.+++..-|.-..+|+.++.++. ...|
T Consensus 81 qwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~ga 160 (677)
T KOG1915|consen 81 QWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGA 160 (677)
T ss_pred HHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHH
Confidence 346777888889999998888888888888888888888888888888888888888888888888776642 2355
Q ss_pred HHHHHHHHhhCCCc------------------------------------------------------------------
Q 007407 335 KSVVAKGVRQIPKS------------------------------------------------------------------ 348 (605)
Q Consensus 335 k~~l~~al~~~P~s------------------------------------------------------------------ 348 (605)
+.++.+-+...|..
T Consensus 161 RqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d 240 (677)
T KOG1915|consen 161 RQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDD 240 (677)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhH
Confidence 55555555555443
Q ss_pred --------------------HHHHHHHHHHHHhCCC--------------------------------------------
Q 007407 349 --------------------ANKIRALRMALDEIPD-------------------------------------------- 364 (605)
Q Consensus 349 --------------------~~a~~vl~kAle~~P~-------------------------------------------- 364 (605)
..++-+|+-||+++|.
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~ 320 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY 320 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC
Confidence 1223334444444444
Q ss_pred cHHHHHHHHHhC----CHHHHHHHHHHHHHhCCCC---------HHHHHHHHHhh-----cHHHHHHHHHHHHHhCCC--
Q 007407 365 SVRLWKALVEIS----SEEEARILLHRAVECCPLD---------VELWLALVRLE-----TYGVARSVLNKARKKLPK-- 424 (605)
Q Consensus 365 ~~~lw~~l~~le----~~e~A~~~l~rAl~~~P~~---------~~lw~aLa~le-----~~e~A~~vL~~al~~~p~-- 424 (605)
+.+.|..+++|+ +.+..+.+|++|+..+|-- ..+|+.++.++ +.+.++.+|+.+++.+|.
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkk 400 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKK 400 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCccc
Confidence 444444444432 3344445555555555432 12444444332 244566677777776664
Q ss_pred --CHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhH
Q 007407 425 --ERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKK 501 (605)
Q Consensus 425 --~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~ 501 (605)
...+|+.+|+.+ ++.++..|.+++-.||..+|+. .+...+.+...+.+.++.|+.+|++-|..+|+ +.
T Consensus 401 FtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~------KlFk~YIelElqL~efDRcRkLYEkfle~~Pe---~c 471 (677)
T KOG1915|consen 401 FTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD------KLFKGYIELELQLREFDRCRKLYEKFLEFSPE---NC 471 (677)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch------hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH---hh
Confidence 356677777666 6666777777777776666653 34555666666667777888888888888777 78
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007407 502 RTWVADVEECKKRGSIETARAIFSPACTVFLT--KKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEK 579 (605)
Q Consensus 502 ~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~--~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~ 579 (605)
.+|..+|.+....|+.+.||++|.-|+...-. ...+|..+..++...|.++.|+.+|++.|...++. .+|+.+|++.
T Consensus 472 ~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~-kvWisFA~fe 550 (677)
T KOG1915|consen 472 YAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHV-KVWISFAKFE 550 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccc-hHHHhHHHHh
Confidence 88888888888888888888888888765322 34678888888888888888888888888877644 4888888876
Q ss_pred H-----HcC-----------ChHHHHHHHHHHHHHCC
Q 007407 580 W-----LAG-----------DVPATRDILQEAYAAIP 600 (605)
Q Consensus 580 ~-----~~g-----------d~~~Ar~il~kAl~~~P 600 (605)
. +.+ ++..||.+|++|....-
T Consensus 551 ~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k 587 (677)
T KOG1915|consen 551 ASASEGQEDEDLAELEITDENIKRARKIFERANTYLK 587 (677)
T ss_pred ccccccccccchhhhhcchhHHHHHHHHHHHHHHHHH
Confidence 5 344 66788888888876543
No 6
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.95 E-value=5.5e-26 Score=239.00 Aligned_cols=332 Identities=15% Similarity=0.100 Sum_probs=298.3
Q ss_pred hhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcC----chhHHHHH
Q 007407 263 ELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLAR----PDEAKSVV 338 (605)
Q Consensus 263 ~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~----~~~Ak~~l 338 (605)
+...+++...--..+++.+|.-.+.+-.+|.+....|+++.|..++..+++..|+..+.|+.++-... ...|-..+
T Consensus 94 q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~ 173 (966)
T KOG4626|consen 94 QGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCF 173 (966)
T ss_pred cccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHH
Confidence 33444555555566788889989999889999999999999999999999999999999998765432 25778889
Q ss_pred HHHHhhCCCc-----------------HHHHHHHHHHHHhCCCcHHHHHHHHHh----CCHHHHHHHHHHHHHhCCCCHH
Q 007407 339 AKGVRQIPKS-----------------ANKIRALRMALDEIPDSVRLWKALVEI----SSEEEARILLHRAVECCPLDVE 397 (605)
Q Consensus 339 ~~al~~~P~s-----------------~~a~~vl~kAle~~P~~~~lw~~l~~l----e~~e~A~~~l~rAl~~~P~~~~ 397 (605)
..||+++|.. .+++.-|.||++..|.-.-.|..+.-. ++...|+..|++||+..|...+
T Consensus 174 ~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~d 253 (966)
T KOG4626|consen 174 FEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLD 253 (966)
T ss_pred HHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchH
Confidence 9999999976 467888999999999988888876432 3678999999999999999999
Q ss_pred HHHHHHHhh----cHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHH
Q 007407 398 LWLALVRLE----TYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAE 472 (605)
Q Consensus 398 lw~aLa~le----~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~ 472 (605)
+++.|++.+ .+++|...|.+|+..-|.+..++-+++-++ .+|..+.|+..|++||+..|. ..+.+-.+|.
T Consensus 254 AYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-----F~~Ay~Nlan 328 (966)
T KOG4626|consen 254 AYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-----FPDAYNNLAN 328 (966)
T ss_pred HHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-----chHHHhHHHH
Confidence 999998764 589999999999999999999999988766 999999999999999998775 5678888999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHH
Q 007407 473 VADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRE 552 (605)
Q Consensus 473 ~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e 552 (605)
.+...|++.+|...|.+++...|. ..+....++..+...|.+++|..+|.++++++|........||.++.++|+++
T Consensus 329 ALkd~G~V~ea~~cYnkaL~l~p~---hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~ 405 (966)
T KOG4626|consen 329 ALKDKGSVTEAVDCYNKALRLCPN---HADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLD 405 (966)
T ss_pred HHHhccchHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHH
Confidence 999999999999999999999998 78888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCC
Q 007407 553 SLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNS 602 (605)
Q Consensus 553 ~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~ 602 (605)
+|+..|+.|+.+.|.-.+.+...|..+-..|+++.|.+.|.+|+++||.-
T Consensus 406 ~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~ 455 (966)
T KOG4626|consen 406 DAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTF 455 (966)
T ss_pred HHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHH
Confidence 99999999999999999999999999989999999999999999999963
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.95 E-value=1.3e-24 Score=254.57 Aligned_cols=334 Identities=16% Similarity=0.111 Sum_probs=242.2
Q ss_pred hhhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcC----chhHHH
Q 007407 261 NSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLAR----PDEAKS 336 (605)
Q Consensus 261 ~~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~----~~~Ak~ 336 (605)
+...|++++|..+|+++++.+|+++..|..++.++...|+++.|..++++++..+|.+..+|...+.+.. .+.|..
T Consensus 475 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 554 (899)
T TIGR02917 475 YLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVA 554 (899)
T ss_pred HHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 4566777778888888777777777777777777777777777877777777777777777777666542 246666
Q ss_pred HHHHHHhhCCCc-----------------HHHHHHHHHHHHhCCCcHHHHHHHHHh----CCHHHHHHHHHHHHHhCCCC
Q 007407 337 VVAKGVRQIPKS-----------------ANKIRALRMALDEIPDSVRLWKALVEI----SSEEEARILLHRAVECCPLD 395 (605)
Q Consensus 337 ~l~~al~~~P~s-----------------~~a~~vl~kAle~~P~~~~lw~~l~~l----e~~e~A~~~l~rAl~~~P~~ 395 (605)
.+.+++...|.+ ..+..++++++...|.+..+|..++.. +++++|+..|+++++..|.+
T Consensus 555 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 634 (899)
T TIGR02917 555 WLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDS 634 (899)
T ss_pred HHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 777776666655 345566666666666666666655432 35666666666666666666
Q ss_pred HHHHHHHHHh----hcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCC------------------------------
Q 007407 396 VELWLALVRL----ETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGN------------------------------ 440 (605)
Q Consensus 396 ~~lw~aLa~l----e~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~------------------------------ 440 (605)
...|..++.+ ++++.|..+|+++++..|.+...|..++.+. ..|+
T Consensus 635 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (899)
T TIGR02917 635 ALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYL 714 (899)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHH
Confidence 6666555432 3566666666666666666555555554444 4444
Q ss_pred ----HHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCC
Q 007407 441 ----TSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGS 516 (605)
Q Consensus 441 ----~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~ 516 (605)
+++|...|++++...|.. ..+...+..+...|+..+|...++.++...|+ +..++...+..+...|+
T Consensus 715 ~~g~~~~A~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~---~~~~~~~la~~~~~~g~ 785 (899)
T TIGR02917 715 RQKDYPAAIQAYRKALKRAPSS------QNAIKLHRALLASGNTAEAVKTLEAWLKTHPN---DAVLRTALAELYLAQKD 785 (899)
T ss_pred HCCCHHHHHHHHHHHHhhCCCc------hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCcC
Confidence 444445555554443321 34555666666777777777777777777766 67778888888888999
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 007407 517 IETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAY 596 (605)
Q Consensus 517 ~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl 596 (605)
+++|..+|+++++.+|++..++..++.++...|+ .+|+.++++++...|+++.+|..+|.++...|++++|..+|++++
T Consensus 786 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 864 (899)
T TIGR02917 786 YDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAV 864 (899)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888 779999999999999999999999999989999999999999999
Q ss_pred HHCCCCCC
Q 007407 597 AAIPNSEE 604 (605)
Q Consensus 597 ~~~P~~~~ 604 (605)
+.+|+++.
T Consensus 865 ~~~~~~~~ 872 (899)
T TIGR02917 865 NIAPEAAA 872 (899)
T ss_pred hhCCCChH
Confidence 99998764
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.94 E-value=1.3e-23 Score=246.02 Aligned_cols=339 Identities=16% Similarity=0.091 Sum_probs=270.4
Q ss_pred chhhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcC----chhHH
Q 007407 260 TNSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLAR----PDEAK 335 (605)
Q Consensus 260 ~~~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~----~~~Ak 335 (605)
.+...|++++|..++++++...|.++..|...+.++...|+++.|..+++++++.+|.+..+|...+.+.. .+.|.
T Consensus 440 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~ 519 (899)
T TIGR02917 440 SYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAI 519 (899)
T ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999998887753 26788
Q ss_pred HHHHHHHhhCCCc-----------------HHHHHHHHHHHHhCCCcHHHHHHHHHh----CCHHHHHHHHHHHHHhCCC
Q 007407 336 SVVAKGVRQIPKS-----------------ANKIRALRMALDEIPDSVRLWKALVEI----SSEEEARILLHRAVECCPL 394 (605)
Q Consensus 336 ~~l~~al~~~P~s-----------------~~a~~vl~kAle~~P~~~~lw~~l~~l----e~~e~A~~~l~rAl~~~P~ 394 (605)
..+.+++...|.+ ..+...+.+++...|.+...|..++.. +++++|+.+++++++..|.
T Consensus 520 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 599 (899)
T TIGR02917 520 QRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPD 599 (899)
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 9999999998877 567888999999999999888776553 4889999999999999999
Q ss_pred CHHHHHHHHHh----hcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcc---------
Q 007407 395 DVELWLALVRL----ETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEV--------- 460 (605)
Q Consensus 395 ~~~lw~aLa~l----e~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~--------- 460 (605)
+..+|..++.+ +++++|...|+++++..|.++.+|..++.+. ..|++++|..+|+++++..|.+..
T Consensus 600 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 679 (899)
T TIGR02917 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLL 679 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 99999988764 4799999999999999999999999999877 899999999999999988765210
Q ss_pred --------------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHH
Q 007407 461 --------------------VIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETA 520 (605)
Q Consensus 461 --------------------~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A 520 (605)
+.+...|...+..+...|+++.|...|+.++...|+ + ..+...+..+...|++++|
T Consensus 680 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~---~-~~~~~l~~~~~~~g~~~~A 755 (899)
T TIGR02917 680 LAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS---S-QNAIKLHRALLASGNTAEA 755 (899)
T ss_pred HHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC---c-hHHHHHHHHHHHCCCHHHH
Confidence 112334444555555566666666666666666555 2 4455566666667777777
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCC
Q 007407 521 RAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIP 600 (605)
Q Consensus 521 ~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P 600 (605)
...+.++++.+|++..++..++.++...|++++|..+|++++..+|+++.++..++..+...|+ ++|+.+++++++..|
T Consensus 756 ~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~ 834 (899)
T TIGR02917 756 VKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAP 834 (899)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCC
Confidence 7777777777777777777777777777777777777777777777777777777777766666 667777777777777
Q ss_pred CCC
Q 007407 601 NSE 603 (605)
Q Consensus 601 ~~~ 603 (605)
+++
T Consensus 835 ~~~ 837 (899)
T TIGR02917 835 NIP 837 (899)
T ss_pred CCc
Confidence 665
No 9
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.94 E-value=2.8e-23 Score=236.29 Aligned_cols=336 Identities=16% Similarity=0.061 Sum_probs=265.0
Q ss_pred cchhhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcCchhHHHHH
Q 007407 259 TTNSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLARPDEAKSVV 338 (605)
Q Consensus 259 ~~~~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~~~~Ak~~l 338 (605)
..+...|++++|...+.++++.+|++..+|...+.++...|+++.|...+..++...+.+...............+...+
T Consensus 168 ~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~ 247 (615)
T TIGR00990 168 ACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKA 247 (615)
T ss_pred HHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHH
Confidence 34677888999999999999999999999999999998899998888888777766543322110000000000000000
Q ss_pred HH---------------------------------HHhhCCC--------------------cHHHHHHHHHHHHh---C
Q 007407 339 AK---------------------------------GVRQIPK--------------------SANKIRALRMALDE---I 362 (605)
Q Consensus 339 ~~---------------------------------al~~~P~--------------------s~~a~~vl~kAle~---~ 362 (605)
.. .....|. -..|.+.|+++++. .
T Consensus 248 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~ 327 (615)
T TIGR00990 248 KEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLG 327 (615)
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCC
Confidence 00 0111111 03466778888875 4
Q ss_pred CCcHHHHHHHH----HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh----hcHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 007407 363 PDSVRLWKALV----EISSEEEARILLHRAVECCPLDVELWLALVRL----ETYGVARSVLNKARKKLPKERAIWIAAAK 434 (605)
Q Consensus 363 P~~~~lw~~l~----~le~~e~A~~~l~rAl~~~P~~~~lw~aLa~l----e~~e~A~~vL~~al~~~p~~~~iwi~~a~ 434 (605)
|+....|..++ ..+++++|+..|+++++..|.+...|+.++.+ +++++|...|+++++..|.++.+|..++.
T Consensus 328 ~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~ 407 (615)
T TIGR00990 328 EKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQ 407 (615)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 66666666553 34589999999999999999999999877653 47999999999999999999999999999
Q ss_pred HH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Q 007407 435 LE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKK 513 (605)
Q Consensus 435 Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~ 513 (605)
+. ..|++++|...|++++...|. ....|...|..+...|+++.|...+++++...|. +..+|..++.++..
T Consensus 408 ~~~~~g~~~~A~~~~~kal~l~P~-----~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~---~~~~~~~lg~~~~~ 479 (615)
T TIGR00990 408 LHFIKGEFAQAGKDYQKSIDLDPD-----FIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE---APDVYNYYGELLLD 479 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCcc-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHH
Confidence 88 999999999999999998876 4567899999999999999999999999999988 78889999999999
Q ss_pred cCCHHHHHHHHHHHHHhcCCCHHHHH------HHH-HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 007407 514 RGSIETARAIFSPACTVFLTKKNIWL------KAA-QLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVP 586 (605)
Q Consensus 514 ~g~~~~A~~i~~~al~~~P~~~~~w~------~la-~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~ 586 (605)
.|++++|+..|++++++.|.....+. ..+ .++...|++++|..+|++|+..+|++...+..+|.+++..|+++
T Consensus 480 ~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~ 559 (615)
T TIGR00990 480 QNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVD 559 (615)
T ss_pred ccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHH
Confidence 99999999999999999987543322 222 33344699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCC
Q 007407 587 ATRDILQEAYAAIPNS 602 (605)
Q Consensus 587 ~Ar~il~kAl~~~P~~ 602 (605)
+|...|++|+++.+..
T Consensus 560 eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 560 EALKLFERAAELARTE 575 (615)
T ss_pred HHHHHHHHHHHHhccH
Confidence 9999999999998753
No 10
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=1.2e-23 Score=215.84 Aligned_cols=331 Identities=19% Similarity=0.282 Sum_probs=252.3
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcCc----hhHHHHHHHHHhh
Q 007407 269 KARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLARP----DEAKSVVAKGVRQ 344 (605)
Q Consensus 269 kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~~----~~Ak~~l~~al~~ 344 (605)
+-|.-|+-.++.|-.+...|+.+|.+++.++.+..|++++++++...-.+..+|+.++.++.. ..|+.+..+|+..
T Consensus 57 RkRkefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~ 136 (677)
T KOG1915|consen 57 RKRKEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI 136 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh
Confidence 356778888888889999999999999999999999999999999999999999999998754 4789999999999
Q ss_pred CCCc-----------------HHHHHHHHHHHHhCCCcHHHHHHHHHhC----CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 007407 345 IPKS-----------------ANKIRALRMALDEIPDSVRLWKALVEIS----SEEEARILLHRAVECCPLDVELWLALV 403 (605)
Q Consensus 345 ~P~s-----------------~~a~~vl~kAle~~P~~~~lw~~l~~le----~~e~A~~~l~rAl~~~P~~~~lw~aLa 403 (605)
.|.- .-++.+|.+.++-.|+ ...|..+++++ +.+.|+.+|++.|-+.|+ +..|+.++
T Consensus 137 lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wikya 214 (677)
T KOG1915|consen 137 LPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWIKYA 214 (677)
T ss_pred cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHHHHH
Confidence 9977 4589999999999997 78899999887 568999999999999987 78999999
Q ss_pred Hhh----cHHHHHHHHHHHHHhCCCCH---HHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccC-----------------
Q 007407 404 RLE----TYGVARSVLNKARKKLPKER---AIWIAAAKLE-ANGNTSMVGKIIERGIRALQGE----------------- 458 (605)
Q Consensus 404 ~le----~~e~A~~vL~~al~~~p~~~---~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~----------------- 458 (605)
+++ ....|+.||.+|++.+.++. .++++.|..| .+..++.|.-+|+-||...|++
T Consensus 215 rFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfG 294 (677)
T KOG1915|consen 215 RFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFG 294 (677)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhc
Confidence 886 35678888888888877653 3466667777 7777888888888888777754
Q ss_pred ---c-------------------ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchh------hHHHHHHHHHH
Q 007407 459 ---E-------------------VVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEED------KKRTWVADVEE 510 (605)
Q Consensus 459 ---~-------------------~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~------~~~~~~~~a~~ 510 (605)
| .+.+.+.|..+....+..|+.++.+.+|+++|..-|.... ...+|+.++..
T Consensus 295 d~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYaly 374 (677)
T KOG1915|consen 295 DKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALY 374 (677)
T ss_pred chhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHH
Confidence 1 1346788888888888888888888888888887654110 23456655542
Q ss_pred -HHHcCCHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q 007407 511 -CKKRGSIETARAIFSPACTVFLTK----KNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDV 585 (605)
Q Consensus 511 -~~~~g~~~~A~~i~~~al~~~P~~----~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~ 585 (605)
.+...+.+.++.+|+.+|++-|.. ..+|+.+|+++..+.+...|++++-.|+-.||++ .+.-.|..+..+.+++
T Consensus 375 eEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~ef 453 (677)
T KOG1915|consen 375 EELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREF 453 (677)
T ss_pred HHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhH
Confidence 234566777777777777777764 4667777777776666666666666666666643 3335555555555555
Q ss_pred HHHHHHHHHHHHHCCCC
Q 007407 586 PATRDILQEAYAAIPNS 602 (605)
Q Consensus 586 ~~Ar~il~kAl~~~P~~ 602 (605)
+.||.+|++-++..|.|
T Consensus 454 DRcRkLYEkfle~~Pe~ 470 (677)
T KOG1915|consen 454 DRCRKLYEKFLEFSPEN 470 (677)
T ss_pred HHHHHHHHHHHhcChHh
Confidence 55555555555555544
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=5.7e-23 Score=248.63 Aligned_cols=354 Identities=16% Similarity=0.131 Sum_probs=287.9
Q ss_pred cCchhHHhhhhhhcccchhhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHH-
Q 007407 244 FDPSGYLTRMNDLKITTNSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVW- 322 (605)
Q Consensus 244 ~dp~~yl~~L~~~~~~~~~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lw- 322 (605)
++|..+|- .++.+....++.+.|+..|.+++..+|+++.++...+++....|+.+.|...+++.++.+|.+..++
T Consensus 25 ~~~~~~Ll----~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~ 100 (1157)
T PRK11447 25 PTAQQQLL----EQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRS 100 (1157)
T ss_pred CCHHHHHH----HHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHH
Confidence 56666632 2234467888999999999999999999999999999999999999999999999999999998875
Q ss_pred ---------------HHHHhhc----CchhHHHHHHHHHhhCCCc------------------HHHHHHHHHHHHhCCCc
Q 007407 323 ---------------LEACRLA----RPDEAKSVVAKGVRQIPKS------------------ANKIRALRMALDEIPDS 365 (605)
Q Consensus 323 ---------------le~a~L~----~~~~Ak~~l~~al~~~P~s------------------~~a~~vl~kAle~~P~~ 365 (605)
+..+++. ..+.|...|.+++...|.+ ..|...|++++..+|++
T Consensus 101 ~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~ 180 (1157)
T PRK11447 101 SRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGN 180 (1157)
T ss_pred HHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCC
Confidence 3333332 2267888888888887766 45788899999999999
Q ss_pred HHHHHHHHHh----CCHHHHHHHHHHHHHhC----------------------------------CCCHHHH---H----
Q 007407 366 VRLWKALVEI----SSEEEARILLHRAVECC----------------------------------PLDVELW---L---- 400 (605)
Q Consensus 366 ~~lw~~l~~l----e~~e~A~~~l~rAl~~~----------------------------------P~~~~lw---~---- 400 (605)
..++..++.+ +++++|+.+|+++++.. |....+- .
T Consensus 181 ~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~ 260 (1157)
T PRK11447 181 TGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAE 260 (1157)
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 9988877654 36788888888775532 2221110 0
Q ss_pred -----------------HHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccc
Q 007407 401 -----------------ALVRLETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVI 462 (605)
Q Consensus 401 -----------------aLa~le~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~ 462 (605)
.+...+++++|...|+++++..|.++.+|..++.+. ..|++++|..+|+++++..|......
T Consensus 261 ~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~ 340 (1157)
T PRK11447 261 QQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRD 340 (1157)
T ss_pred HHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchh
Confidence 011224688999999999999999999999999877 99999999999999999887643110
Q ss_pred -------cHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 007407 463 -------DRDTW--MKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLT 533 (605)
Q Consensus 463 -------~~~~w--l~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~ 533 (605)
....| +..+..+...|++++|...|++++..+|. +..+++.++.++...|++++|+..|+++++.+|+
T Consensus 341 ~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~---~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~ 417 (1157)
T PRK11447 341 KWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNT---DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG 417 (1157)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 01122 34467778899999999999999999998 7788999999999999999999999999999999
Q ss_pred CHHHHHHHHHHH------------------------------------------HHcCCHHHHHHHHHHHHHhCCCCHHH
Q 007407 534 KKNIWLKAAQLE------------------------------------------KSYGCRESLIALLRKAVTYCPQAEVL 571 (605)
Q Consensus 534 ~~~~w~~la~l~------------------------------------------~~~g~~e~A~~~lekAl~~~P~~~~l 571 (605)
+..+|..++.++ ...|++++|+.+|+++++.+|+++.+
T Consensus 418 ~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~ 497 (1157)
T PRK11447 418 NTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWL 497 (1157)
T ss_pred CHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 988877665543 35699999999999999999999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCCC
Q 007407 572 WLMGAKEKWLAGDVPATRDILQEAYAAIPNSEE 604 (605)
Q Consensus 572 ~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~~ 604 (605)
++.+|.+++..|++++|...|+++++.+|+++.
T Consensus 498 ~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~ 530 (1157)
T PRK11447 498 TYRLAQDLRQAGQRSQADALMRRLAQQKPNDPE 530 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence 999999999999999999999999999998763
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.93 E-value=6.5e-23 Score=233.25 Aligned_cols=336 Identities=13% Similarity=0.083 Sum_probs=275.4
Q ss_pred cchhhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcCc----hhH
Q 007407 259 TTNSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLARP----DEA 334 (605)
Q Consensus 259 ~~~~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~~----~~A 334 (605)
..+...|++.+|...|+++++.+|+ +..|..++.++...|+++.|...+.++++.+|++.++|+..+..+.. +.|
T Consensus 135 ~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA 213 (615)
T TIGR00990 135 NKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADA 213 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 3467889999999999999999996 77899999999999999999999999999999999999988766432 466
Q ss_pred HHHHHHHHhhCCCc-------------HHHHHHHHHHHHhCCCcHHHHHHH-----------------------------
Q 007407 335 KSVVAKGVRQIPKS-------------ANKIRALRMALDEIPDSVRLWKAL----------------------------- 372 (605)
Q Consensus 335 k~~l~~al~~~P~s-------------~~a~~vl~kAle~~P~~~~lw~~l----------------------------- 372 (605)
...+..++...+.. ..+...+..+++..|.+...|..+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (615)
T TIGR00990 214 LLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNG 293 (615)
T ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccc
Confidence 66665554443322 111222333444455432211111
Q ss_pred -HH----------hCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHh----hcHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 007407 373 -VE----------ISSEEEARILLHRAVEC---CPLDVELWLALVRL----ETYGVARSVLNKARKKLPKERAIWIAAAK 434 (605)
Q Consensus 373 -~~----------le~~e~A~~~l~rAl~~---~P~~~~lw~aLa~l----e~~e~A~~vL~~al~~~p~~~~iwi~~a~ 434 (605)
.. .+.+++|..+|+++++. .|....+|..++.+ +++++|+..|++++...|.....|+.++.
T Consensus 294 ~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~ 373 (615)
T TIGR00990 294 QLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRAS 373 (615)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 00 12578999999999986 47777777766543 57999999999999999999999999998
Q ss_pred HH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Q 007407 435 LE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKK 513 (605)
Q Consensus 435 Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~ 513 (605)
+. ..|++++|...|+++++..|. +...|...+..+...|+++.|...|++++..+|+ +...|+.++..+..
T Consensus 374 ~~~~~g~~~eA~~~~~~al~~~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~---~~~~~~~la~~~~~ 445 (615)
T TIGR00990 374 MNLELGDPDKAEEDFDKALKLNSE-----DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD---FIFSHIQLGVTQYK 445 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc---CHHHHHHHHHHHHH
Confidence 77 899999999999999998765 5678999999999999999999999999999998 78889999999999
Q ss_pred cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHH-cCChH
Q 007407 514 RGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVL------WLMGAKEKWL-AGDVP 586 (605)
Q Consensus 514 ~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l------~l~~a~~~~~-~gd~~ 586 (605)
.|++++|+..|++++..+|+++.+|..+|.++...|++++|++.|++|+...|++... ++..+..++. .|+++
T Consensus 446 ~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~ 525 (615)
T TIGR00990 446 EGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFI 525 (615)
T ss_pred CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHH
Confidence 9999999999999999999999999999999999999999999999999999865322 3333444444 69999
Q ss_pred HHHHHHHHHHHHCCCCC
Q 007407 587 ATRDILQEAYAAIPNSE 603 (605)
Q Consensus 587 ~Ar~il~kAl~~~P~~~ 603 (605)
+|..+|++|++++|++.
T Consensus 526 eA~~~~~kAl~l~p~~~ 542 (615)
T TIGR00990 526 EAENLCEKALIIDPECD 542 (615)
T ss_pred HHHHHHHHHHhcCCCcH
Confidence 99999999999999875
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.93 E-value=9e-23 Score=232.65 Aligned_cols=322 Identities=8% Similarity=-0.052 Sum_probs=276.3
Q ss_pred hhhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcCchhHHHHHHH
Q 007407 261 NSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLARPDEAKSVVAK 340 (605)
Q Consensus 261 ~~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~~~~Ak~~l~~ 340 (605)
..+.|++.+|..++..++..+|.++.++..++......|+++.|...++++++.+|++.++|+..+.+....
T Consensus 52 ~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~-------- 123 (656)
T PRK15174 52 CLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKS-------- 123 (656)
T ss_pred HHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc--------
Confidence 468899999999999999999999999999999999999999999999999999999999998887664220
Q ss_pred HHhhCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHh----CCHHHHHHHHHHHHHhCCCCHHHHHHH---HHhhcHHHHHH
Q 007407 341 GVRQIPKSANKIRALRMALDEIPDSVRLWKALVEI----SSEEEARILLHRAVECCPLDVELWLAL---VRLETYGVARS 413 (605)
Q Consensus 341 al~~~P~s~~a~~vl~kAle~~P~~~~lw~~l~~l----e~~e~A~~~l~rAl~~~P~~~~lw~aL---a~le~~e~A~~ 413 (605)
.+...|...|++++...|++..+|..++.+ +++++|...|.+++...|.+..++..+ ...+++++|..
T Consensus 124 -----g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~ 198 (656)
T PRK15174 124 -----KQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHD 198 (656)
T ss_pred -----CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHH
Confidence 011234566777778888888888766543 588999999999999999998877544 33457899999
Q ss_pred HHHHHHHhCCCC-HHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHH----HHHHH
Q 007407 414 VLNKARKKLPKE-RAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVT----CVAII 487 (605)
Q Consensus 414 vL~~al~~~p~~-~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~----A~~i~ 487 (605)
+++++++..|.+ ...+..++... ..|++++|...|++++...|. +...|..+|..+...|.+++ |...+
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-----~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~ 273 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-----GAALRRSLGLAYYQSGRSREAKLQAAEHW 273 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHcCCchhhHHHHHHHH
Confidence 999999887644 33344445555 889999999999999988765 56788889999999998875 89999
Q ss_pred HHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 007407 488 TNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQ 567 (605)
Q Consensus 488 ~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~ 567 (605)
++++..+|+ +..+|..++..+...|++++|+..|++++..+|++..++..++.++...|++++|+..|++++..+|+
T Consensus 274 ~~Al~l~P~---~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~ 350 (656)
T PRK15174 274 RHALQFNSD---NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV 350 (656)
T ss_pred HHHHhhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 999999998 78899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCC
Q 007407 568 AEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSE 603 (605)
Q Consensus 568 ~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~ 603 (605)
+...+..++..+...|++++|...|+++++.+|++.
T Consensus 351 ~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 351 TSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 887777778888899999999999999999999863
No 14
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.93 E-value=2.6e-22 Score=242.92 Aligned_cols=332 Identities=13% Similarity=0.058 Sum_probs=250.4
Q ss_pred hhhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHH--HHHHH------------H
Q 007407 261 NSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNED--VWLEA------------C 326 (605)
Q Consensus 261 ~~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~--lwle~------------a 326 (605)
....|++..|...|+++++.+|+++.+|..++.++...|++++|+..|+++++.+|++.. .|..+ +
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g 358 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQG 358 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHH
Confidence 456788888888888888888888888888888888888888888888888888887653 22111 1
Q ss_pred h----hcCchhHHHHHHHHHhhCCCc-----------------HHHHHHHHHHHHhCCCcHHHHHHHH------------
Q 007407 327 R----LARPDEAKSVVAKGVRQIPKS-----------------ANKIRALRMALDEIPDSVRLWKALV------------ 373 (605)
Q Consensus 327 ~----L~~~~~Ak~~l~~al~~~P~s-----------------~~a~~vl~kAle~~P~~~~lw~~l~------------ 373 (605)
. ....+.|...|.+++...|.+ ..|.+.|++++...|++...|..++
T Consensus 359 ~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~ 438 (1157)
T PRK11447 359 DAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKAL 438 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHH
Confidence 1 112257778888888888876 4577788888888888776554332
Q ss_pred ----------------------------------HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh----hcHHHHHHHH
Q 007407 374 ----------------------------------EISSEEEARILLHRAVECCPLDVELWLALVRL----ETYGVARSVL 415 (605)
Q Consensus 374 ----------------------------------~le~~e~A~~~l~rAl~~~P~~~~lw~aLa~l----e~~e~A~~vL 415 (605)
..+++++|+..|+++++..|++..+++.++.+ +++++|...|
T Consensus 439 ~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l 518 (1157)
T PRK11447 439 AFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALM 518 (1157)
T ss_pred HHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 12467889999999999999998888877654 4789999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHH-------------------------------------Hhcc
Q 007407 416 NKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIR-------------------------------------ALQG 457 (605)
Q Consensus 416 ~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~-------------------------------------~~p~ 457 (605)
+++++..|.++..++.++.+. ..|+.++|...++++.. .+..
T Consensus 519 ~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~ 598 (1157)
T PRK11447 519 RRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ 598 (1157)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 999999999998888877655 77777777766654311 1100
Q ss_pred CcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH
Q 007407 458 EEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNI 537 (605)
Q Consensus 458 ~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~ 537 (605)
.+.+...++.+|..+...|+++.|...|++++...|+ +..+++.++.++...|++++|+.+|++++...|++..+
T Consensus 599 --~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~---~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~ 673 (1157)
T PRK11447 599 --QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG---NADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNT 673 (1157)
T ss_pred --CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHH
Confidence 0223456677777788888888888888888888777 77778888888888888888888888888888888888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 007407 538 WLKAAQLEKSYGCRESLIALLRKAVTYCPQAE------VLWLMGAKEKWLAGDVPATRDILQEAYA 597 (605)
Q Consensus 538 w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~------~l~l~~a~~~~~~gd~~~Ar~il~kAl~ 597 (605)
+..+|.++...|++++|.++|++++...|+++ .++..+|.++...|++++|...|++|+.
T Consensus 674 ~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 674 QRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 88888888888888888888888887765432 3555667777778888888888888876
No 15
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.91 E-value=1.2e-21 Score=227.71 Aligned_cols=340 Identities=11% Similarity=0.011 Sum_probs=271.0
Q ss_pred chhhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcC----chhHH
Q 007407 260 TNSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLAR----PDEAK 335 (605)
Q Consensus 260 ~~~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~----~~~Ak 335 (605)
.....|++.+|..+|+++++.+|.++.+++.++.+....|++++|+.+++++++..|.+.. |+.++.+.. .+.|.
T Consensus 58 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al 136 (765)
T PRK10049 58 AYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDEL 136 (765)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHH
Confidence 3578899999999999999999999999999999999999999999999999999999999 988877643 36788
Q ss_pred HHHHHHHhhCCCcHH-----------------HHHHHHHHHHhCCCcHH-----HHHHHHHh---------CCH---HHH
Q 007407 336 SVVAKGVRQIPKSAN-----------------KIRALRMALDEIPDSVR-----LWKALVEI---------SSE---EEA 381 (605)
Q Consensus 336 ~~l~~al~~~P~s~~-----------------a~~vl~kAle~~P~~~~-----lw~~l~~l---------e~~---e~A 381 (605)
..+.++++..|++.. |...+++++. .|.... .....+.+ +.+ +.|
T Consensus 137 ~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~A 215 (765)
T PRK10049 137 RAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRA 215 (765)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHH
Confidence 999999999999932 3333443332 332100 00111111 123 678
Q ss_pred HHHHHHHHHhCCCCHHHH-------H----HHHHhhcHHHHHHHHHHHHHhC---CCCHHHHHHHHHHH-HcCCHHHHHH
Q 007407 382 RILLHRAVECCPLDVELW-------L----ALVRLETYGVARSVLNKARKKL---PKERAIWIAAAKLE-ANGNTSMVGK 446 (605)
Q Consensus 382 ~~~l~rAl~~~P~~~~lw-------~----aLa~le~~e~A~~vL~~al~~~---p~~~~iwi~~a~Le-~~g~~~~a~~ 446 (605)
+..|+++++..|.++... + .|...+++++|+..|+++++.. |.....|+ +.+. ..|++++|..
T Consensus 216 l~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~l--a~~yl~~g~~e~A~~ 293 (765)
T PRK10049 216 LAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWV--ASAYLKLHQPEKAQS 293 (765)
T ss_pred HHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHH--HHHHHhcCCcHHHHH
Confidence 999999997755443221 1 1233357899999999999885 44445554 5555 8999999999
Q ss_pred HHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------------hhhHHHHHHHHHHHHHc
Q 007407 447 IIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDE------------EDKKRTWVADVEECKKR 514 (605)
Q Consensus 447 i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~------------~~~~~~~~~~a~~~~~~ 514 (605)
+|+++++..|... ......+..++..+...|.+++|...++.++...|.. ++...++...+..+...
T Consensus 294 ~l~~~l~~~p~~~-~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~ 372 (765)
T PRK10049 294 ILTELFYHPETIA-DLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYS 372 (765)
T ss_pred HHHHHhhcCCCCC-CCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHc
Confidence 9999987654321 1124556666667788999999999999999887631 12345677889999999
Q ss_pred CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 007407 515 GSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQE 594 (605)
Q Consensus 515 g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~k 594 (605)
|++++|+.+|++++...|++..+|..+|.++...|++++|+++|++|+...|++..+++..|..+...|++++|..++++
T Consensus 373 g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ 452 (765)
T PRK10049 373 NDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDD 452 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCCCC
Q 007407 595 AYAAIPNSEE 604 (605)
Q Consensus 595 Al~~~P~~~~ 604 (605)
+++..|+++.
T Consensus 453 ll~~~Pd~~~ 462 (765)
T PRK10049 453 VVAREPQDPG 462 (765)
T ss_pred HHHhCCCCHH
Confidence 9999999874
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=8.1e-21 Score=216.63 Aligned_cols=308 Identities=11% Similarity=0.008 Sum_probs=258.8
Q ss_pred hhhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcCchhHHHHHHH
Q 007407 261 NSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLARPDEAKSVVAK 340 (605)
Q Consensus 261 ~~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~~~~Ak~~l~~ 340 (605)
....|++..|...|++++..+|+++.+|..++.++...|+++.|+..++++++..|.+..+|...+++....
T Consensus 86 ~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~-------- 157 (656)
T PRK15174 86 PLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLM-------- 157 (656)
T ss_pred HhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC--------
Confidence 467999999999999999999999999999999999999999999999999999999999999887764220
Q ss_pred HHhhCCCcHHHHHHHHHHHHhCCCcHHHHHH---HHHhCCHHHHHHHHHHHHHhCCCCHHHH-H----HHHHhhcHHHHH
Q 007407 341 GVRQIPKSANKIRALRMALDEIPDSVRLWKA---LVEISSEEEARILLHRAVECCPLDVELW-L----ALVRLETYGVAR 412 (605)
Q Consensus 341 al~~~P~s~~a~~vl~kAle~~P~~~~lw~~---l~~le~~e~A~~~l~rAl~~~P~~~~lw-~----aLa~le~~e~A~ 412 (605)
.....|...+++++...|++..++.. +...+++++|...++++++..|.....+ . .|...+++++|.
T Consensus 158 -----g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~ 232 (656)
T PRK15174 158 -----DKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAI 232 (656)
T ss_pred -----CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHH
Confidence 00022334455555666666665533 3445688999999999999876443322 2 334567899999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHH----HHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHH
Q 007407 413 SVLNKARKKLPKERAIWIAAAKLE-ANGNTSM----VGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAII 487 (605)
Q Consensus 413 ~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~----a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~ 487 (605)
..|.+++...|.++.++..++.+. ..|+++. |...|++++...|. +...|..++..+...|.+++|...+
T Consensus 233 ~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-----~~~a~~~lg~~l~~~g~~~eA~~~l 307 (656)
T PRK15174 233 QTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-----NVRIVTLYADALIRTGQNEKAIPLL 307 (656)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999999999877 8898775 89999999998876 5678999999999999999999999
Q ss_pred HHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 007407 488 TNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQ 567 (605)
Q Consensus 488 ~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~ 567 (605)
++++..+|+ +..++..++..+...|++++|+..|++++...|+...++..++.++...|++++|+..|+++++.+|+
T Consensus 308 ~~al~l~P~---~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 308 QQSLATHPD---LPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 999999998 77888999999999999999999999999999999887878899999999999999999999999998
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCC
Q 007407 568 AEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPN 601 (605)
Q Consensus 568 ~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~ 601 (605)
+. ..++++|...|.+++...+.
T Consensus 385 ~~------------~~~~~ea~~~~~~~~~~~~~ 406 (656)
T PRK15174 385 HL------------PQSFEEGLLALDGQISAVNL 406 (656)
T ss_pred hc------------hhhHHHHHHHHHHHHHhcCC
Confidence 74 23455777888888776644
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=6.8e-20 Score=212.94 Aligned_cols=338 Identities=15% Similarity=-0.001 Sum_probs=259.6
Q ss_pred hhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhc----CchhHHHH
Q 007407 262 SELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLA----RPDEAKSV 337 (605)
Q Consensus 262 ~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~----~~~~Ak~~ 337 (605)
.-.|+..+|..++.++...+|....++..+|.++...|++.+|..+++++++..|.+.++|+.++.+. ..+.|...
T Consensus 26 ~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~ 105 (765)
T PRK10049 26 LWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVK 105 (765)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999998877654 22567777
Q ss_pred HHHHHhhCCCc----------------HHHHHHHHHHHHhCCCcHHHHHHHHHh----CCHHHHHHHHHHHHHhCCCCHH
Q 007407 338 VAKGVRQIPKS----------------ANKIRALRMALDEIPDSVRLWKALVEI----SSEEEARILLHRAVECCPLDVE 397 (605)
Q Consensus 338 l~~al~~~P~s----------------~~a~~vl~kAle~~P~~~~lw~~l~~l----e~~e~A~~~l~rAl~~~P~~~~ 397 (605)
+.+++...|.+ ..|...|+++++..|++..++..++.+ +..+.|+..+++++. .|....
T Consensus 106 l~~~l~~~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~ 184 (765)
T PRK10049 106 AKQLVSGAPDKANLLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKR 184 (765)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHH
Confidence 77777777766 345666777777777777766655433 245667777766554 443211
Q ss_pred -----HHHHHHHh---------hcH---HHHHHHHHHHHHhCCCCHHH-------HHH-HHHHHHcCCHHHHHHHHHHHH
Q 007407 398 -----LWLALVRL---------ETY---GVARSVLNKARKKLPKERAI-------WIA-AAKLEANGNTSMVGKIIERGI 452 (605)
Q Consensus 398 -----lw~aLa~l---------e~~---e~A~~vL~~al~~~p~~~~i-------wi~-~a~Le~~g~~~~a~~i~~~al 452 (605)
....++++ +.+ +.|+..++.+++..|.++.. ++. ++.+...|+.++|+..|++++
T Consensus 185 ~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll 264 (765)
T PRK10049 185 DLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLK 264 (765)
T ss_pred HHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 01111111 123 56788888888775554332 121 233446688999999999988
Q ss_pred HHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 007407 453 RALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEE-DKKRTWVADVEECKKRGSIETARAIFSPACTVF 531 (605)
Q Consensus 453 ~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~-~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~ 531 (605)
+..+. .+.....|+ +..+...|+++.|..+|++++..+|... .....+..++..+...|++++|+.+++.++...
T Consensus 265 ~~~~~--~P~~a~~~l--a~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~ 340 (765)
T PRK10049 265 AEGQI--IPPWAQRWV--ASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNS 340 (765)
T ss_pred ccCCC--CCHHHHHHH--HHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcC
Confidence 76422 122345554 7788899999999999999998876631 124456666777889999999999999999988
Q ss_pred CC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 007407 532 LT---------------KKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAY 596 (605)
Q Consensus 532 P~---------------~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl 596 (605)
|. ...++..++.++...|++++|+++|++++...|+++.+|+.+|.++...|++++|++.|++|+
T Consensus 341 P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al 420 (765)
T PRK10049 341 PPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAE 420 (765)
T ss_pred CceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 73 245778899999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCCC
Q 007407 597 AAIPNSEE 604 (605)
Q Consensus 597 ~~~P~~~~ 604 (605)
+.+|++..
T Consensus 421 ~l~Pd~~~ 428 (765)
T PRK10049 421 VLEPRNIN 428 (765)
T ss_pred hhCCCChH
Confidence 99999853
No 18
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.86 E-value=1.8e-18 Score=202.58 Aligned_cols=332 Identities=15% Similarity=0.092 Sum_probs=260.0
Q ss_pred hhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCH----HHHHHHHhhcCchhHHHH
Q 007407 262 SELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNE----DVWLEACRLARPDEAKSV 337 (605)
Q Consensus 262 ~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~----~lwle~a~L~~~~~Ak~~ 337 (605)
...+...+++..+....+..|.++.....++-+....|+.+.|..+|+++... +.+. .+...++.++..+..-..
T Consensus 353 ~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~ 431 (987)
T PRK09782 353 VATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPF-QGDARLSQTLMARLASLLESHPYLAT 431 (987)
T ss_pred cccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCC-CcccccCHHHHHHHHHHHHhCCcccc
Confidence 46678889999999999999999999999999999999999999999999986 3333 233355555432211000
Q ss_pred HHHHHhhCC---Cc------------HHHHHHHHHHHHhCCC--cHHHHHHHHHh---CCHHHHHHHHHHHHHhCCCCHH
Q 007407 338 VAKGVRQIP---KS------------ANKIRALRMALDEIPD--SVRLWKALVEI---SSEEEARILLHRAVECCPLDVE 397 (605)
Q Consensus 338 l~~al~~~P---~s------------~~a~~vl~kAle~~P~--~~~lw~~l~~l---e~~e~A~~~l~rAl~~~P~~~~ 397 (605)
-.+++...+ .+ ..+...+++++...|. +...|..++.. ..+++|+..|.+++...|++..
T Consensus 432 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~Pd~~~ 511 (987)
T PRK09782 432 PAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQPDAWQ 511 (987)
T ss_pred hHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhCCchHH
Confidence 111111111 11 2245567777777787 88888876543 3678899999999999998754
Q ss_pred HHHHHH----HhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHH
Q 007407 398 LWLALV----RLETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAE 472 (605)
Q Consensus 398 lw~aLa----~le~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~ 472 (605)
++.++ ..+++++|...++++....|.+ ..|+.++.+. ..|+...|..+|+++++..|.. ...+...+.
T Consensus 512 -~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~-----~~l~~~La~ 584 (987)
T PRK09782 512 -HRAVAYQAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGD-----NALYWWLHA 584 (987)
T ss_pred -HHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcc-----HHHHHHHHH
Confidence 44333 3467999999999987765554 4577777766 8899999999999999876542 334444455
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHH
Q 007407 473 VADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRE 552 (605)
Q Consensus 473 ~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e 552 (605)
.+...|+++.|...|++++..+|+ ...|...+..+.+.|++++|+..|++++..+|++..++..+|.++...|+++
T Consensus 585 ~l~~~Gr~~eAl~~~~~AL~l~P~----~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~e 660 (987)
T PRK09782 585 QRYIPGQPELALNDLTRSLNIAPS----ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIA 660 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 555679999999999999999885 4678899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCCCC
Q 007407 553 SLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSEEI 605 (605)
Q Consensus 553 ~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~~I 605 (605)
+|+.+|++|++.+|+++.+|..+|.++...|++++|+..|++|++..|++..|
T Consensus 661 eAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i 713 (987)
T PRK09782 661 QSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALI 713 (987)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchh
Confidence 99999999999999999999999999999999999999999999999988654
No 19
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.83 E-value=3.3e-17 Score=181.53 Aligned_cols=331 Identities=14% Similarity=0.121 Sum_probs=237.1
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCH-----HHHHHHHhhcCchhHHHHHHHH
Q 007407 267 ILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNE-----DVWLEACRLARPDEAKSVVAKG 341 (605)
Q Consensus 267 ~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~-----~lwle~a~L~~~~~Ak~~l~~a 341 (605)
.+.|-..|..+++..|+|..+.+.-|++....|+|..|..+|..++..||... .+|+...+|...+.|+..+.++
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ra 225 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERA 225 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHH
Confidence 47788888888888888888888888888888888888888888888777542 3477777777777777777777
Q ss_pred HhhCCCc-------------------------------------------------------------------------
Q 007407 342 VRQIPKS------------------------------------------------------------------------- 348 (605)
Q Consensus 342 l~~~P~s------------------------------------------------------------------------- 348 (605)
++++|++
T Consensus 226 lqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~ 305 (1018)
T KOG2002|consen 226 LQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSI 305 (1018)
T ss_pred HhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHH
Confidence 7777766
Q ss_pred ------------------HHHHHHHHHHHHhCCCc-H----HHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 007407 349 ------------------ANKIRALRMALDEIPDS-V----RLWKALVEISSEEEARILLHRAVECCPLDVELWLALVRL 405 (605)
Q Consensus 349 ------------------~~a~~vl~kAle~~P~~-~----~lw~~l~~le~~e~A~~~l~rAl~~~P~~~~lw~aLa~l 405 (605)
..|...|..++...|++ + .+-..++..++.+.|...|+++++..|++.+....|+.+
T Consensus 306 ~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~L 385 (1018)
T KOG2002|consen 306 KAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCL 385 (1018)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhH
Confidence 22334455555555554 1 111122222344556666666666666666666666655
Q ss_pred hc--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHc
Q 007407 406 ET--------YGVARSVLNKARKKLPKERAIWIAAAKLEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRA 477 (605)
Q Consensus 406 e~--------~e~A~~vL~~al~~~p~~~~iwi~~a~Le~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~ 477 (605)
+. .+.|..++.++++..|.+.++|+.+++|..++++.....+|.+|+..+-..+-....++.-..|......
T Consensus 386 ya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~ 465 (1018)
T KOG2002|consen 386 YAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRL 465 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHh
Confidence 42 2567788888888888888888888887656666666788888887776555445566666777777888
Q ss_pred CCHHHHHHHHHHHHHh-----CCCc--hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 007407 478 GSVVTCVAIITNTIEI-----GVDE--EDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGC 550 (605)
Q Consensus 478 g~~~~A~~i~~~al~~-----~p~~--~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~ 550 (605)
|.+..|...+..++.. ++++ ..+..+-+++|.++...++++.|..+|..+++.+|++...+..++.+....++
T Consensus 466 g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~ 545 (1018)
T KOG2002|consen 466 GNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNN 545 (1018)
T ss_pred cChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccC
Confidence 8888888888888775 2221 12344567788888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 007407 551 RESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYA 597 (605)
Q Consensus 551 ~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~ 597 (605)
..+|...+..++..+..+|.+|-.+|..+.+...+..|..-+...++
T Consensus 546 ~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~ 592 (1018)
T KOG2002|consen 546 LYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILK 592 (1018)
T ss_pred cHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHh
Confidence 88888888888888888888888888777776666666665555444
No 20
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.82 E-value=8.8e-17 Score=172.38 Aligned_cols=290 Identities=13% Similarity=0.042 Sum_probs=226.1
Q ss_pred hhhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcCchhHHHHHHH
Q 007407 261 NSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLARPDEAKSVVAK 340 (605)
Q Consensus 261 ~~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~~~~Ak~~l~~ 340 (605)
....|++++|...|+++++.+|+++..|..++.++...|+++.|..++++++.. |......... .+
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~-----------~~-- 110 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSR-PDLTREQRLL-----------AL-- 110 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcC-CCCCHHHHHH-----------HH--
Confidence 356788999999999999999999999999999999999999999999988774 3221110000 00
Q ss_pred HHhhCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh----hcHHHHHHHHH
Q 007407 341 GVRQIPKSANKIRALRMALDEIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALVRL----ETYGVARSVLN 416 (605)
Q Consensus 341 al~~~P~s~~a~~vl~kAle~~P~~~~lw~~l~~le~~e~A~~~l~rAl~~~P~~~~lw~aLa~l----e~~e~A~~vL~ 416 (605)
..+-..+...++++.|..+|.++++..|.+..++..++.+ +++++|...+.
T Consensus 111 -------------------------~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 165 (389)
T PRK11788 111 -------------------------QELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAE 165 (389)
T ss_pred -------------------------HHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 0111223444578888888888888888888777766654 47888988999
Q ss_pred HHHHhCCCCHH-----HHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007407 417 KARKKLPKERA-----IWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNT 490 (605)
Q Consensus 417 ~al~~~p~~~~-----iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~a 490 (605)
++++..|.+.. .|..++.+. ..|++++|..+|+++++..|. ....|...+..+...|+++.|..+++++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~ 240 (389)
T PRK11788 166 RLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQ-----CVRASILLGDLALAQGDYAAAIEALERV 240 (389)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 88887776532 455666666 889999999999999987665 4567888899999999999999999999
Q ss_pred HHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 007407 491 IEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEV 570 (605)
Q Consensus 491 l~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~ 570 (605)
+..+|.. ...++...+..+...|++++|...++++++..|+... +..++.++.+.|++++|..+|++++...|++..
T Consensus 241 ~~~~p~~--~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~ 317 (389)
T PRK11788 241 EEQDPEY--LSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRG 317 (389)
T ss_pred HHHChhh--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHH
Confidence 9887761 3456777888999999999999999999999998754 488999999999999999999999999999887
Q ss_pred HHHHHHHHHHH--cCChHHHHHHHHHHHH
Q 007407 571 LWLMGAKEKWL--AGDVPATRDILQEAYA 597 (605)
Q Consensus 571 l~l~~a~~~~~--~gd~~~Ar~il~kAl~ 597 (605)
+...++..+.. .|+..+|..++++.++
T Consensus 318 ~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 318 FHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 76556554432 4577777776666654
No 21
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.80 E-value=1.9e-17 Score=183.52 Aligned_cols=375 Identities=14% Similarity=0.106 Sum_probs=281.8
Q ss_pred hhhhhhhhccccccccCCccccCchhHHhhhhhhcccchhhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhc---
Q 007407 223 RGKILTLKLDGISDSVTGLTVFDPSGYLTRMNDLKITTNSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELAN--- 299 (605)
Q Consensus 223 R~~~l~~kld~~~~~~~~~~~~dp~~yl~~L~~~~~~~~~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g--- 299 (605)
|..=...++++++..+..++..+|.+++-.+ .-.++.+...|+++.+..+|+++++.+|++......++.++...+
T Consensus 315 Rs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~-~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~ 393 (1018)
T KOG2002|consen 315 RSYHAQGDFEKAFKYYMESLKADNDNFVLPL-VGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQ 393 (1018)
T ss_pred HHHHhhccHHHHHHHHHHHHccCCCCccccc-cchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhh
Confidence 3333444666666544444555666642111 123456788999999999999999999999999999999997664
Q ss_pred -CHHHHHHHHHHHHhhCCCCHHHHHHHHhhcCc---hhHHHHHHHHHh-------hCCCc---------------HHHHH
Q 007407 300 -EEAAARKLITKGCNMCPKNEDVWLEACRLARP---DEAKSVVAKGVR-------QIPKS---------------ANKIR 353 (605)
Q Consensus 300 -~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~~---~~Ak~~l~~al~-------~~P~s---------------~~a~~ 353 (605)
..+.|..++.++++..|.+.+.|+..++|... ..+...|.+|+. ..|-. ..|..
T Consensus 394 ~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~ 473 (1018)
T KOG2002|consen 394 EKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALE 473 (1018)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHH
Confidence 66899999999999999999999999998643 233455555553 22221 45677
Q ss_pred HHHHHHHh-----CCCc-----HHHHHHHHH----hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhh----cHHHHHHHH
Q 007407 354 ALRMALDE-----IPDS-----VRLWKALVE----ISSEEEARILLHRAVECCPLDVELWLALVRLE----TYGVARSVL 415 (605)
Q Consensus 354 vl~kAle~-----~P~~-----~~lw~~l~~----le~~e~A~~~l~rAl~~~P~~~~lw~aLa~le----~~e~A~~vL 415 (605)
.+.+|+.. +++. +.+-..++. +.+++.|..+|..+++.+|..++.++.|+.+. ...+|...+
T Consensus 474 ~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~l 553 (1018)
T KOG2002|consen 474 HFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLL 553 (1018)
T ss_pred HHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHH
Confidence 77777765 2222 112233333 33779999999999999999999998876442 567899999
Q ss_pred HHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHH------------HcCCHHH
Q 007407 416 NKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVAD------------RAGSVVT 482 (605)
Q Consensus 416 ~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e------------~~g~~~~ 482 (605)
+.++..+..++.+|-.+|.++ .......+.+-|+..++..... .+.=..+.++.++. ..+..+.
T Consensus 554 k~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~---~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~K 630 (1018)
T KOG2002|consen 554 KDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTK---TDAYSLIALGNVYIQALHNPSRNPEKEKKHQEK 630 (1018)
T ss_pred HHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccC---CchhHHHHhhHHHHHHhcccccChHHHHHHHHH
Confidence 999999999999999999877 5555556666565555543222 11111222222221 2345788
Q ss_pred HHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007407 483 CVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAV 562 (605)
Q Consensus 483 A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl 562 (605)
|.++|.++|..+|. |..+=.-.+-.+...|++.+|+.||.++.+.--....+|..+|++|...|++-.|+++|+.++
T Consensus 631 Alq~y~kvL~~dpk---N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~l 707 (1018)
T KOG2002|consen 631 ALQLYGKVLRNDPK---NMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCL 707 (1018)
T ss_pred HHHHHHHHHhcCcc---hhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999987 555545567778889999999999999998877888999999999999999999999999999
Q ss_pred HhC-C-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCCC
Q 007407 563 TYC-P-QAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSEE 604 (605)
Q Consensus 563 ~~~-P-~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~~ 604 (605)
+.+ + ++..+..-+|+.++..|.+.+|...+.+|+...|.++.
T Consensus 708 kkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~ 751 (1018)
T KOG2002|consen 708 KKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTS 751 (1018)
T ss_pred HHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccch
Confidence 986 3 55888899999999999999999999999999999875
No 22
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.80 E-value=4e-19 Score=182.41 Aligned_cols=268 Identities=16% Similarity=0.153 Sum_probs=121.0
Q ss_pred HhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC--CCCHHHHHHHHhhcCchhHHHHHHHHHhhCCCcHHHHHHHH
Q 007407 279 KNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMC--PKNEDVWLEACRLARPDEAKSVVAKGVRQIPKSANKIRALR 356 (605)
Q Consensus 279 ~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~--P~~~~lwle~a~L~~~~~Ak~~l~~al~~~P~s~~a~~vl~ 356 (605)
+..|. ...+.+|+++...|++++|..++.+++... |++.++|..++.|...
T Consensus 4 ~~~~~--~~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~------------------------- 56 (280)
T PF13429_consen 4 EFGPS--EEALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWS------------------------- 56 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccc--cccccccccccccccccccccccccccccccccccccccccccccccc-------------------------
Confidence 34555 334567888888888888888887666544 6666666555444321
Q ss_pred HHHHhCCCcHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh---hcHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 007407 357 MALDEIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALVRL---ETYGVARSVLNKARKKLPKERAIWIAAA 433 (605)
Q Consensus 357 kAle~~P~~~~lw~~l~~le~~e~A~~~l~rAl~~~P~~~~lw~aLa~l---e~~e~A~~vL~~al~~~p~~~~iwi~~a 433 (605)
+++++.|+..|++++...|.++.....|+.+ .++++|..++.++.+..+ ++..|..++
T Consensus 57 ------------------~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l 117 (280)
T PF13429_consen 57 ------------------LGDYDEAIEAYEKLLASDKANPQDYERLIQLLQDGDPEEALKLAEKAYERDG-DPRYLLSAL 117 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------------cccccccccccccccccccccccccccccccccccccccccccccccccccc-ccchhhHHH
Confidence 1255677777777777777766666555544 467888888888877654 466676666
Q ss_pred HHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHH
Q 007407 434 KLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECK 512 (605)
Q Consensus 434 ~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~ 512 (605)
.+. ..++.+++..+++++....+ .+.+...|...|..+.+.|+.+.|..+|++++..+|+ +..++..++.+++
T Consensus 118 ~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~---~~~~~~~l~~~li 191 (280)
T PF13429_consen 118 QLYYRLGDYDEAEELLEKLEELPA---APDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD---DPDARNALAWLLI 191 (280)
T ss_dssp H-HHHTT-HHHHHHHHHHHHH-T------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT----HHHHHHHHHHHC
T ss_pred HHHHHHhHHHHHHHHHHHHHhccC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHH
Confidence 666 88899999999999775321 1346789999999999999999999999999999998 7788888888999
Q ss_pred HcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 007407 513 KRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDIL 592 (605)
Q Consensus 513 ~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il 592 (605)
..|++++++.+++...+..|.++.+|..+|.++...|++++|+.+|++++..+|+++.++.+||.++...|+.++|..++
T Consensus 192 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~ 271 (280)
T PF13429_consen 192 DMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLR 271 (280)
T ss_dssp TTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------
T ss_pred HCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 007407 593 QEAYAA 598 (605)
Q Consensus 593 ~kAl~~ 598 (605)
.++++.
T Consensus 272 ~~~~~~ 277 (280)
T PF13429_consen 272 RQALRL 277 (280)
T ss_dssp ------
T ss_pred cccccc
Confidence 999864
No 23
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.80 E-value=1.8e-16 Score=168.71 Aligned_cols=239 Identities=21% Similarity=0.302 Sum_probs=198.4
Q ss_pred HHHhCCCcHHHHHHHHHhC--CHHHHHHHHHHHHHhC-C-----CCHHHHHHHHHhh----cHHHHHHHHHHHHHhC-CC
Q 007407 358 ALDEIPDSVRLWKALVEIS--SEEEARILLHRAVECC-P-----LDVELWLALVRLE----TYGVARSVLNKARKKL-PK 424 (605)
Q Consensus 358 Ale~~P~~~~lw~~l~~le--~~e~A~~~l~rAl~~~-P-----~~~~lw~aLa~le----~~e~A~~vL~~al~~~-p~ 424 (605)
+|.++|+++.-|..-+.+. ++.+-+..|..|++.+ | .-..+|..+++++ ..+.|+.++++|++.. ++
T Consensus 341 lLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~ 420 (835)
T KOG2047|consen 341 LLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKT 420 (835)
T ss_pred HHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccc
Confidence 3467899999999888876 5677788899998763 4 2357999999986 4788999999999874 33
Q ss_pred C---HHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcc--------------cccHHHHHHHHHHHHHcCCHHHHHHH
Q 007407 425 E---RAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEV--------------VIDRDTWMKEAEVADRAGSVVTCVAI 486 (605)
Q Consensus 425 ~---~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~--------------~~~~~~wl~~A~~~e~~g~~~~A~~i 486 (605)
- ..+|+..|.+| .+.+++.|.+++++|... |.... ..+..+|..++...+..|-+++++++
T Consensus 421 v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~v 499 (835)
T KOG2047|consen 421 VEDLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAV 499 (835)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHH
Confidence 2 67899999999 888999999999998753 33311 13678999999999999999999999
Q ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--CCCHHHHHHHH-HHHHHcC--CHHHHHHHHHHH
Q 007407 487 ITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVF--LTKKNIWLKAA-QLEKSYG--CRESLIALLRKA 561 (605)
Q Consensus 487 ~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~--P~~~~~w~~la-~l~~~~g--~~e~A~~~lekA 561 (605)
|.++|.+-.- .+.+-+++|.++..+.-++++..+|++.+.+| |+-..+|..+- .+-.+.| +.+.|+.+|++|
T Consensus 500 YdriidLria---TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqa 576 (835)
T KOG2047|consen 500 YDRIIDLRIA---TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQA 576 (835)
T ss_pred HHHHHHHhcC---CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 9999998766 78889999999999999999999999999998 77899999764 3444444 689999999999
Q ss_pred HHhCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCC
Q 007407 562 VTYCP--QAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIP 600 (605)
Q Consensus 562 l~~~P--~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P 600 (605)
|..|| ..-.+++.||+++...|-...|.+||++|-...+
T Consensus 577 L~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~ 617 (835)
T KOG2047|consen 577 LDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVK 617 (835)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC
Confidence 99998 2356899999999999999999999999876554
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.80 E-value=3.2e-16 Score=180.45 Aligned_cols=368 Identities=11% Similarity=-0.003 Sum_probs=261.8
Q ss_pred cccccccCCccccCchh--HHhhhhhhcccchhhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHH
Q 007407 232 DGISDSVTGLTVFDPSG--YLTRMNDLKITTNSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLIT 309 (605)
Q Consensus 232 d~~~~~~~~~~~~dp~~--yl~~L~~~~~~~~~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~ 309 (605)
+.+++.+..++..+|.. .+.++. ......|+..+|+.++++++...|.+.....++|.++...|++++|..+++
T Consensus 51 ~~Al~~L~qaL~~~P~~~~av~dll----~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~ 126 (822)
T PRK14574 51 APVLDYLQEESKAGPLQSGQVDDWL----QIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQ 126 (822)
T ss_pred HHHHHHHHHHHhhCccchhhHHHHH----HHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34444445555566663 122221 123455778888888888884444445555555778877888888888888
Q ss_pred HHHhhCCCCHHHHHHHHhhcC----chhHHHHHHHHHhhCCCc----------------HHHHHHHHHHHHhCCCcHHHH
Q 007407 310 KGCNMCPKNEDVWLEACRLAR----PDEAKSVVAKGVRQIPKS----------------ANKIRALRMALDEIPDSVRLW 369 (605)
Q Consensus 310 ~~l~~~P~~~~lwle~a~L~~----~~~Ak~~l~~al~~~P~s----------------~~a~~vl~kAle~~P~~~~lw 369 (605)
++++..|+++++++.++.++. .+.|...+.+++...|.. ..|..+|+++++..|++.+++
T Consensus 127 kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~ 206 (822)
T PRK14574 127 SSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVL 206 (822)
T ss_pred HHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHH
Confidence 888888888888776555432 246667777777776665 246677778888888777665
Q ss_pred HHHHH----hC---------------------------------------------C---HHHHHHHHHHHHHh---CCC
Q 007407 370 KALVE----IS---------------------------------------------S---EEEARILLHRAVEC---CPL 394 (605)
Q Consensus 370 ~~l~~----le---------------------------------------------~---~e~A~~~l~rAl~~---~P~ 394 (605)
..++. ++ . .+.|...++..+.. .|.
T Consensus 207 ~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~ 286 (822)
T PRK14574 207 KNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPE 286 (822)
T ss_pred HHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCc
Confidence 44321 10 0 13355556666663 344
Q ss_pred CHHHH--------HHHHHhhcHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccC-cccc
Q 007407 395 DVELW--------LALVRLETYGVARSVLNKARKK---LPKERAIWIAAAKLEANGNTSMVGKIIERGIRALQGE-EVVI 462 (605)
Q Consensus 395 ~~~lw--------~aLa~le~~e~A~~vL~~al~~---~p~~~~iwi~~a~Le~~g~~~~a~~i~~~al~~~p~~-~~~~ 462 (605)
....| .+|...+++.+++..|+..... .|.....|+.-+.| ..+.+.+|..+|.+++...+.. ..+.
T Consensus 287 ~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl-~~~~P~kA~~l~~~~~~~~~~~~~~~~ 365 (822)
T PRK14574 287 AQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYI-DRRLPEKAAPILSSLYYSDGKTFRNSD 365 (822)
T ss_pred cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH-hcCCcHHHHHHHHHHhhccccccCCCc
Confidence 33333 3455566788888888876643 24444444433333 6788999999999998865422 1122
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------------CchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007407 463 DRDTWMKEAEVADRAGSVVTCVAIITNTIEIGV------------DEEDKKRTWVADVEECKKRGSIETARAIFSPACTV 530 (605)
Q Consensus 463 ~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p------------~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~ 530 (605)
+......+.-.+...+.+++|..++..+....| .+++........+..+.-.|++.+|...+++.+..
T Consensus 366 ~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~ 445 (822)
T PRK14574 366 DLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST 445 (822)
T ss_pred chHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 333334455566778899999999999988544 13456677777888899999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCCC
Q 007407 531 FLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSEE 604 (605)
Q Consensus 531 ~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~~ 604 (605)
.|.+..++..+|.++...|.+..|...++.++..+|++..+....+......|++.+|..+..+.++..|++..
T Consensus 446 aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 446 APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIP 519 (822)
T ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999864
No 25
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.79 E-value=2.3e-16 Score=169.17 Aligned_cols=269 Identities=13% Similarity=0.013 Sum_probs=212.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcCchhHHHHHHHHHhhCCCcHHHHHHHHHHHHhCCCcHH
Q 007407 288 WIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLARPDEAKSVVAKGVRQIPKSANKIRALRMALDEIPDSVR 367 (605)
Q Consensus 288 wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~~~~Ak~~l~~al~~~P~s~~a~~vl~kAle~~P~~~~ 367 (605)
++..+..+...|+++.|..++.++++.+|.+..+|+..+.++
T Consensus 38 ~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~-------------------------------------- 79 (389)
T PRK11788 38 DYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLF-------------------------------------- 79 (389)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHH--------------------------------------
Confidence 333455556677777888888887777777766665544432
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCCC----HHHHHHHHH----hhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-Hc
Q 007407 368 LWKALVEISSEEEARILLHRAVECCPLD----VELWLALVR----LETYGVARSVLNKARKKLPKERAIWIAAAKLE-AN 438 (605)
Q Consensus 368 lw~~l~~le~~e~A~~~l~rAl~~~P~~----~~lw~aLa~----le~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~ 438 (605)
...+++++|+.++++++...+.. ...+..++. .++++.|..+|+++++..|.+..++..++.+. ..
T Consensus 80 -----~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 154 (389)
T PRK11788 80 -----RRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQE 154 (389)
T ss_pred -----HHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHh
Confidence 12234556666666665532222 123444443 35799999999999999898888999999877 99
Q ss_pred CCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHH
Q 007407 439 GNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIE 518 (605)
Q Consensus 439 g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~ 518 (605)
|++++|..+++++++..|..........|...+..+...|+++.|...+++++..+|. ....++.++..+...|+++
T Consensus 155 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~ 231 (389)
T PRK11788 155 KDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQ---CVRASILLGDLALAQGDYA 231 (389)
T ss_pred chHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcC---CHHHHHHHHHHHHHCCCHH
Confidence 9999999999999887654321112235667788888899999999999999999887 6778899999999999999
Q ss_pred HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 007407 519 TARAIFSPACTVFLTK-KNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYA 597 (605)
Q Consensus 519 ~A~~i~~~al~~~P~~-~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~ 597 (605)
+|..+|++++...|.+ ..+|..++.++...|++++|...+++++...|+...+ ..++..+.+.|++++|..+|+++++
T Consensus 232 ~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~~~A~~~l~~~l~ 310 (389)
T PRK11788 232 AAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLL-LALAQLLEEQEGPEAAQALLREQLR 310 (389)
T ss_pred HHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH-HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999999998886 4678899999999999999999999999999987655 8899999999999999999999999
Q ss_pred HCCCCC
Q 007407 598 AIPNSE 603 (605)
Q Consensus 598 ~~P~~~ 603 (605)
..|++.
T Consensus 311 ~~P~~~ 316 (389)
T PRK11788 311 RHPSLR 316 (389)
T ss_pred hCcCHH
Confidence 999864
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.79 E-value=3e-16 Score=183.94 Aligned_cols=318 Identities=10% Similarity=0.026 Sum_probs=251.3
Q ss_pred hhhhccHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhcC---HHHH-------------------------HHHHH
Q 007407 261 NSELRDILKARKIVRAVTKNSPKK---PLGWIQAARLEELANE---EAAA-------------------------RKLIT 309 (605)
Q Consensus 261 ~~~~gd~~kAr~ll~~al~~~P~~---~~~wia~Arle~~~g~---~~~A-------------------------r~ll~ 309 (605)
..+.|+.+.|+.+|+++....++- ...-..++.++...+. ...| ...+.
T Consensus 386 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (987)
T PRK09782 386 LMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIV 465 (987)
T ss_pred HHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHH
Confidence 367899999999999998863322 1222256666665544 2222 22233
Q ss_pred HHHhhCCC--CHHHHHHHHhhcCchhHHHHHHHHHhhCCCcHHHHHHHHHHHHhCCCcHHHHH----HHHHhCCHHHHHH
Q 007407 310 KGCNMCPK--NEDVWLEACRLARPDEAKSVVAKGVRQIPKSANKIRALRMALDEIPDSVRLWK----ALVEISSEEEARI 383 (605)
Q Consensus 310 ~~l~~~P~--~~~lwle~a~L~~~~~Ak~~l~~al~~~P~s~~a~~vl~kAle~~P~~~~lw~----~l~~le~~e~A~~ 383 (605)
+++..+|. +..+|+.++.+.... ....|...+.+++...|++.. .. .+...+++++|+.
T Consensus 466 ~al~~~p~~~~~~a~~~LG~~l~~~--------------~~~eAi~a~~~Al~~~Pd~~~-~L~lA~al~~~Gr~eeAi~ 530 (987)
T PRK09782 466 RLLGDMSPSYDAAAWNRLAKCYRDT--------------LPGVALYAWLQAEQRQPDAWQ-HRAVAYQAYQVEDYATALA 530 (987)
T ss_pred HhcccCCCCCCHHHHHHHHHHHHhC--------------CcHHHHHHHHHHHHhCCchHH-HHHHHHHHHHCCCHHHHHH
Confidence 33444455 666666655443210 112355566677777776543 22 1235668999999
Q ss_pred HHHHHHHhCCCCHHHHHHHH----HhhcHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHhccC
Q 007407 384 LLHRAVECCPLDVELWLALV----RLETYGVARSVLNKARKKLPKERAIWIAAAK-LEANGNTSMVGKIIERGIRALQGE 458 (605)
Q Consensus 384 ~l~rAl~~~P~~~~lw~aLa----~le~~e~A~~vL~~al~~~p~~~~iwi~~a~-Le~~g~~~~a~~i~~~al~~~p~~ 458 (605)
.|++++...|.+ ..|+.++ ..++++.|...|+++++..|....++..++. ++..|++++|...|+++++..|.
T Consensus 531 ~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~- 608 (987)
T PRK09782 531 AWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS- 608 (987)
T ss_pred HHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-
Confidence 999988776665 4455444 3468899999999999999998877766654 33779999999999999998773
Q ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH
Q 007407 459 EVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIW 538 (605)
Q Consensus 459 ~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w 538 (605)
...|...|..+.+.|.+++|...|++++..+|+ +..++..++..+...|++++|+.+|+++++.+|+++.+|
T Consensus 609 -----~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd---~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~ 680 (987)
T PRK09782 609 -----ANAYVARATIYRQRHNVPAAVSDLRAALELEPN---NSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALI 680 (987)
T ss_pred -----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 468999999999999999999999999999998 888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCC
Q 007407 539 LKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSE 603 (605)
Q Consensus 539 ~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~ 603 (605)
..+|.++...|++++|+..|++|+...|++..+.+.++.++....++..|.+.|.++...+|++.
T Consensus 681 ~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 681 RQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 99999999999999999999999999999999999999999999999999999999999999864
No 27
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=2e-16 Score=163.98 Aligned_cols=330 Identities=13% Similarity=0.070 Sum_probs=221.8
Q ss_pred hhhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcCc----hhH--
Q 007407 261 NSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLARP----DEA-- 334 (605)
Q Consensus 261 ~~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~~----~~A-- 334 (605)
....|+++.|..+|..++..+|+.|-.+-..|-.++..|++++..+...++++.+|+...+++..+.-+.. +.|
T Consensus 125 ~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~ 204 (606)
T KOG0547|consen 125 FFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALF 204 (606)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHH
Confidence 56888999999999999999999999999999999999999999999999999999999999887765421 111
Q ss_pred ----------------------------HHHHHHHHh-----hCCCc-----------------------------HHHH
Q 007407 335 ----------------------------KSVVAKGVR-----QIPKS-----------------------------ANKI 352 (605)
Q Consensus 335 ----------------------------k~~l~~al~-----~~P~s-----------------------------~~a~ 352 (605)
+......+. ..|.. ..+.
T Consensus 205 D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l 284 (606)
T KOG0547|consen 205 DVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEAL 284 (606)
T ss_pred hhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHH
Confidence 111111111 01111 0011
Q ss_pred HH--------HHHHHHhC----------C----CcHHHHHHH--------HHh--CCHHHHHHHHHHHHHhCCCCHHHHH
Q 007407 353 RA--------LRMALDEI----------P----DSVRLWKAL--------VEI--SSEEEARILLHRAVECCPLDVELWL 400 (605)
Q Consensus 353 ~v--------l~kAle~~----------P----~~~~lw~~l--------~~l--e~~e~A~~~l~rAl~~~P~~~~lw~ 400 (605)
+. |.++.... + -+.++-... ..+ ++.-.|...|..+++..|....+++
T Consensus 285 ~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI 364 (606)
T KOG0547|consen 285 EALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYI 364 (606)
T ss_pred HHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHH
Confidence 11 11111000 0 011110000 011 1445666777777777777766555
Q ss_pred HHH----HhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHH
Q 007407 401 ALV----RLETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVAD 475 (605)
Q Consensus 401 aLa----~le~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e 475 (605)
-++ ...+.+.-.+.|++|...+|+++++++..|++. -.++++.|..-|++++...|.+ .-.+++.+-...
T Consensus 365 ~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~-----~~~~iQl~~a~Y 439 (606)
T KOG0547|consen 365 KRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPEN-----AYAYIQLCCALY 439 (606)
T ss_pred HHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHH
Confidence 433 233556667778888888888888887777766 6667778888888887776653 334566666666
Q ss_pred HcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHH-c
Q 007407 476 RAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLT------KKNIWLKAAQLEKS-Y 548 (605)
Q Consensus 476 ~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~------~~~~w~~la~l~~~-~ 548 (605)
+++.+..+...|+.++.-.|+ .++.+...|+.+..+++|+.|...|.+|+++.|. +...+..-|.+..+ .
T Consensus 440 r~~k~~~~m~~Fee~kkkFP~---~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk 516 (606)
T KOG0547|consen 440 RQHKIAESMKTFEEAKKKFPN---CPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK 516 (606)
T ss_pred HHHHHHHHHHHHHHHHHhCCC---CchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchh
Confidence 777778888888888887777 6777777778888888888888888888888777 44333333333322 3
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007407 549 GCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAA 598 (605)
Q Consensus 549 g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~ 598 (605)
+++..|..++.+|++.+|.....+..+|.++.+.|++++|.++|+++..+
T Consensus 517 ~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 517 EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 67778888888888888888888888888888888888888888877654
No 28
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.75 E-value=6.3e-15 Score=159.54 Aligned_cols=291 Identities=14% Similarity=0.040 Sum_probs=202.0
Q ss_pred hhhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCH-HHHHHHHhhcCchhHHHHHH
Q 007407 261 NSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNE-DVWLEACRLARPDEAKSVVA 339 (605)
Q Consensus 261 ~~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~-~lwle~a~L~~~~~Ak~~l~ 339 (605)
....||+..|++.+.++.+..|.....++..|+.....|+++.|..++.++.+..|.+. .+.+.++++
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l----------- 162 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRI----------- 162 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHH-----------
Confidence 45778888888888888888887777778888888888888888888888877777663 333322222
Q ss_pred HHHhhCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh----hcHHHHHHHH
Q 007407 340 KGVRQIPKSANKIRALRMALDEIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALVRL----ETYGVARSVL 415 (605)
Q Consensus 340 ~al~~~P~s~~a~~vl~kAle~~P~~~~lw~~l~~le~~e~A~~~l~rAl~~~P~~~~lw~aLa~l----e~~e~A~~vL 415 (605)
++..++++.|+..++++++..|++..++..++.+ ++++.|...+
T Consensus 163 --------------------------------~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l 210 (409)
T TIGR00540 163 --------------------------------LLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDII 210 (409)
T ss_pred --------------------------------HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 1223356666667777777777776666555433 3566677777
Q ss_pred HHHHHhCCCCHHHHHH---HH---HHHHcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007407 416 NKARKKLPKERAIWIA---AA---KLEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITN 489 (605)
Q Consensus 416 ~~al~~~p~~~~iwi~---~a---~Le~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~ 489 (605)
.+.++....++.-... .+ .+ ..+..+.....+.++.+.+|.. ...+...+..++..+...|..+.|..++++
T Consensus 211 ~~l~k~~~~~~~~~~~l~~~a~~~~l-~~~~~~~~~~~L~~~~~~~p~~-~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~ 288 (409)
T TIGR00540 211 DNMAKAGLFDDEEFADLEQKAEIGLL-DEAMADEGIDGLLNWWKNQPRH-RRHNIALKIALAEHLIDCDDHDSAQEIIFD 288 (409)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHH-HHHHHhcCHHHHHHHHHHCCHH-HhCCHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 7766664333322211 11 11 1122223344566666666532 012567788888888888888888888888
Q ss_pred HHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHHhC
Q 007407 490 TIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKK--NIWLKAAQLEKSYGCRESLIALLR--KAVTYC 565 (605)
Q Consensus 490 al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~--~~w~~la~l~~~~g~~e~A~~~le--kAl~~~ 565 (605)
+++..|++.. ...+..........++...++..++++++..|+++ .+...+|+++.+.|++++|++.|+ .+++..
T Consensus 289 ~l~~~pd~~~-~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~ 367 (409)
T TIGR00540 289 GLKKLGDDRA-ISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQ 367 (409)
T ss_pred HHhhCCCccc-chhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcC
Confidence 8888777321 11111112223345778899999999999999999 999999999999999999999999 577888
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007407 566 PQAEVLWLMGAKEKWLAGDVPATRDILQEAYAA 598 (605)
Q Consensus 566 P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~ 598 (605)
|+++. +..+|.++++.|+.++|+.+|++++..
T Consensus 368 p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 368 LDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred CCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 98766 559999999999999999999999764
No 29
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=1.3e-15 Score=163.91 Aligned_cols=281 Identities=12% Similarity=0.085 Sum_probs=218.8
Q ss_pred ccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCH---HHHHHHHhhcCc-hhHHHHHHH
Q 007407 265 RDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNE---DVWLEACRLARP-DEAKSVVAK 340 (605)
Q Consensus 265 gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~---~lwle~a~L~~~-~~Ak~~l~~ 340 (605)
-+-+.|..+|.+.-...++-..+...+++.+...+++.+|..+|+.+-+..|-.+ +++-... ++.. +.+...+.
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~L-WHLq~~v~Ls~La- 410 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTL-WHLQDEVALSYLA- 410 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHH-HHHHhhHHHHHHH-
Confidence 3567888889887777787776667789999999999999999999988888543 2221111 1111 12222332
Q ss_pred HHhhCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHhC----CHHHHHHHHHHHHHhCCCCHHHHHHH----HHhhcHHHHH
Q 007407 341 GVRQIPKSANKIRALRMALDEIPDSVRLWKALVEIS----SEEEARILLHRAVECCPLDVELWLAL----VRLETYGVAR 412 (605)
Q Consensus 341 al~~~P~s~~a~~vl~kAle~~P~~~~lw~~l~~le----~~e~A~~~l~rAl~~~P~~~~lw~aL----a~le~~e~A~ 412 (605)
+..+...|++++.|-.+++.. +.+.|++.++||+..+|....++..+ +..++++.|.
T Consensus 411 ---------------q~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~ 475 (638)
T KOG1126|consen 411 ---------------QDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAM 475 (638)
T ss_pred ---------------HHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHH
Confidence 334688999999999987654 66999999999999999888777644 3557899999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007407 413 SVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTI 491 (605)
Q Consensus 413 ~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al 491 (605)
+.|++|+..+|.+..+|+-+|..+ ++++++.|.-.|++|++..|.+. -+..-.+..+.+.|..++|..+|++|+
T Consensus 476 ~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~ns-----vi~~~~g~~~~~~k~~d~AL~~~~~A~ 550 (638)
T KOG1126|consen 476 KSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNS-----VILCHIGRIQHQLKRKDKALQLYEKAI 550 (638)
T ss_pred HHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccch-----hHHhhhhHHHHHhhhhhHHHHHHHHHH
Confidence 999999999999999999999888 88888899888999988887753 344455667777788888888888888
Q ss_pred HhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 007407 492 EIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEV 570 (605)
Q Consensus 492 ~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~ 570 (605)
..+|. ++-..+..+.++...+++++|...+++.-++-|....+++.+|.++.+.|+.+.|+.-|-=|+..+|+-..
T Consensus 551 ~ld~k---n~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 551 HLDPK---NPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred hcCCC---CchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 88877 66666777888888888888888888888888888888888888888888888888888888888875544
No 30
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.72 E-value=3.5e-14 Score=163.69 Aligned_cols=338 Identities=11% Similarity=-0.017 Sum_probs=249.7
Q ss_pred hhhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhc----CchhHHH
Q 007407 261 NSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLA----RPDEAKS 336 (605)
Q Consensus 261 ~~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~----~~~~Ak~ 336 (605)
..+.|++..|+..|+++++.+|.+++....++.+....|+.++|+.++++++.-.|.+....+..+.++ ..+.|..
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aie 123 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALA 123 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 579999999999999999999999766558888888899999999999999954555555555444443 2268889
Q ss_pred HHHHHHhhCCCc-----------------HHHHHHHHHHHHhCCCcHHHHHHHHHhC----CHHHHHHHHHHHHHhCCCC
Q 007407 337 VVAKGVRQIPKS-----------------ANKIRALRMALDEIPDSVRLWKALVEIS----SEEEARILLHRAVECCPLD 395 (605)
Q Consensus 337 ~l~~al~~~P~s-----------------~~a~~vl~kAle~~P~~~~lw~~l~~le----~~e~A~~~l~rAl~~~P~~ 395 (605)
+|.++++..|++ ..|...+.+++...|..... +.++.+. +..+|+..|+++++..|++
T Consensus 124 ly~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n 202 (822)
T PRK14574 124 LWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTS 202 (822)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCC
Confidence 999999999998 45778888888888985543 5444433 5556999999999999999
Q ss_pred HHHHHHHHHh----hc------------------------------------------------HHHHHHHHHHHHHhC-
Q 007407 396 VELWLALVRL----ET------------------------------------------------YGVARSVLNKARKKL- 422 (605)
Q Consensus 396 ~~lw~aLa~l----e~------------------------------------------------~e~A~~vL~~al~~~- 422 (605)
.+++..+... +- .+.|..-+...+...
T Consensus 203 ~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~ 282 (822)
T PRK14574 203 EEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWG 282 (822)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhcc
Confidence 8876644321 10 012333344444422
Q ss_pred --CCCHHHHHHHH-----HHHHcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 007407 423 --PKERAIWIAAA-----KLEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGV 495 (605)
Q Consensus 423 --p~~~~iwi~~a-----~Le~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p 495 (605)
|.....|..+- -|...|+...|++.|+..-... ..+|.....|. |..+...+.++.|..+|+.++...+
T Consensus 283 ~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~--~~~P~y~~~a~--adayl~~~~P~kA~~l~~~~~~~~~ 358 (822)
T PRK14574 283 KDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEG--YKMPDYARRWA--ASAYIDRRLPEKAAPILSSLYYSDG 358 (822)
T ss_pred CCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcC--CCCCHHHHHHH--HHHHHhcCCcHHHHHHHHHHhhccc
Confidence 33323333321 1225566777777776643221 11233334444 5667788899999999999988653
Q ss_pred Cc---hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC---------------CCHHHHHHHHHHHHHcCCHHHHHHH
Q 007407 496 DE---EDKKRTWVADVEECKKRGSIETARAIFSPACTVFL---------------TKKNIWLKAAQLEKSYGCRESLIAL 557 (605)
Q Consensus 496 ~~---~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P---------------~~~~~w~~la~l~~~~g~~e~A~~~ 557 (605)
+. ++.......+...+...+++++|..++++.....| +...+...++..+.-.|+..+|.+.
T Consensus 359 ~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~ 438 (822)
T PRK14574 359 KTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKK 438 (822)
T ss_pred cccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 20 11333234566678899999999999999998544 3456677789999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCC
Q 007407 558 LRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSE 603 (605)
Q Consensus 558 lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~ 603 (605)
+++.+...|.++.+++.+|.++...|.+.+|+.+++.+...+|++.
T Consensus 439 le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~ 484 (822)
T PRK14574 439 LEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSL 484 (822)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccH
Confidence 9999999999999999999999999999999999999999999875
No 31
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=6.4e-14 Score=144.91 Aligned_cols=308 Identities=16% Similarity=0.089 Sum_probs=236.9
Q ss_pred CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcCchhHHHHHHHHHhhCCCc-------------
Q 007407 282 PKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLARPDEAKSVVAKGVRQIPKS------------- 348 (605)
Q Consensus 282 P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~~~~Ak~~l~~al~~~P~s------------- 348 (605)
-.++-+....+.++...|....|+..+-..+...|-+-..|+++..+-.+..-..+ .+...|.+
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~---l~~~l~~~~h~M~~~F~~~a~ 237 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSI---LVVGLPSDMHWMKKFFLKKAY 237 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHH---HHhcCcccchHHHHHHHHHHH
Confidence 44555566678888899999999999999999999999999999988655211111 11112221
Q ss_pred ------HHHHHHHHHHHHh-CCCcHHHHH--HHHHh--CCHHHHHHHHHHHHHhCCCCH---HHHH-------------H
Q 007407 349 ------ANKIRALRMALDE-IPDSVRLWK--ALVEI--SSEEEARILLHRAVECCPLDV---ELWL-------------A 401 (605)
Q Consensus 349 ------~~a~~vl~kAle~-~P~~~~lw~--~l~~l--e~~e~A~~~l~rAl~~~P~~~---~lw~-------------a 401 (605)
..+..-+...+.. .|++.-+-- +.+.. -+++.|+.+|+..++.+|-.. +++. -
T Consensus 238 ~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~ 317 (559)
T KOG1155|consen 238 QELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSY 317 (559)
T ss_pred HHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHH
Confidence 2222223333333 566543322 22222 378999999999999999543 2221 0
Q ss_pred HHH----h------------------hcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccC
Q 007407 402 LVR----L------------------ETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGE 458 (605)
Q Consensus 402 La~----l------------------e~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~ 458 (605)
||. + .+.+.|...+++|++.+|....+|...|-=. ...+...|+..|++|++..|.
T Consensus 318 LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~- 396 (559)
T KOG1155|consen 318 LAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR- 396 (559)
T ss_pred HHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch-
Confidence 111 0 0257899999999999999999999999533 666788899999999999876
Q ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH
Q 007407 459 EVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIW 538 (605)
Q Consensus 459 ~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w 538 (605)
+...|...++.++..+.+.-|.-.|++++..-|. +..+|..+++.|.+.+++++|+.+|.+|+...-.+..++
T Consensus 397 ----DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn---DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l 469 (559)
T KOG1155|consen 397 ----DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN---DSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSAL 469 (559)
T ss_pred ----hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC---chHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHH
Confidence 6889999999999999999999999999999998 789999999999999999999999999999988889999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCC
Q 007407 539 LKAAQLEKSYGCRESLIALLRKAVTY-------CPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIP 600 (605)
Q Consensus 539 ~~la~l~~~~g~~e~A~~~lekAl~~-------~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P 600 (605)
..+|.++.+.++.++|-..|++.+.. .|+-..+.+.+|..+.+.+++++|-.+..+++..+|
T Consensus 470 ~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~ 538 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGET 538 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCc
Confidence 99999999999999999999999983 343345566688888889999999888877776544
No 32
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.72 E-value=2.2e-17 Score=169.50 Aligned_cols=224 Identities=18% Similarity=0.173 Sum_probs=113.6
Q ss_pred HhCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHh----hcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHH
Q 007407 374 EISSEEEARILLHRAVECC--PLDVELWLALVRL----ETYGVARSVLNKARKKLPKERAIWIAAAKLEANGNTSMVGKI 447 (605)
Q Consensus 374 ~le~~e~A~~~l~rAl~~~--P~~~~lw~aLa~l----e~~e~A~~vL~~al~~~p~~~~iwi~~a~Le~~g~~~~a~~i 447 (605)
..+++++|..+|.+.+... |++..+|..++.+ ++++.|+..|++++...+.++..+..++.+...+++.+|..+
T Consensus 20 ~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l~~~~~~~~A~~~ 99 (280)
T PF13429_consen 20 QRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQLLQDGDPEEALKL 99 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3358899999997766555 8999999988765 478999999999999988888888887776677889999999
Q ss_pred HHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007407 448 IERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPA 527 (605)
Q Consensus 448 ~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~a 527 (605)
+.++++..+ +...|..++..+...+...++..+++.+...... +.+..+|+..|.++.+.|+.++|+.+|+++
T Consensus 100 ~~~~~~~~~------~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 100 AEKAYERDG------DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAA-PDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp ------------------------H-HHHTT-HHHHHHHHHHHHH-T----T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccc------ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999887653 2345667777888899999999999998764422 347889999999999999999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCCC
Q 007407 528 CTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSEE 604 (605)
Q Consensus 528 l~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~~ 604 (605)
++.+|++..++..+++++...|+.+++..+++......|.++.+|..+|..+...|++++|..+|+++++.+|+|+.
T Consensus 173 l~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 173 LELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999864
No 33
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.70 E-value=5.5e-14 Score=153.22 Aligned_cols=341 Identities=15% Similarity=0.103 Sum_probs=263.3
Q ss_pred hhhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC--CCCHHHHHHHHhhcCc-----hh
Q 007407 261 NSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMC--PKNEDVWLEACRLARP-----DE 333 (605)
Q Consensus 261 ~~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~--P~~~~lwle~a~L~~~-----~~ 333 (605)
....|++..+-..|++++.-.-.....|..++--+...|.-..|.++++...... |.+..+.+..+++... ..
T Consensus 333 l~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~ee 412 (799)
T KOG4162|consen 333 LSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEE 412 (799)
T ss_pred HHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhh
Confidence 4577889999999999998888888889999988889999999999999988877 8888888777766432 22
Q ss_pred HHHHHHHHHhhC--------C-----------------Cc--------HHHHHHHHHHHHhCCCcHHHHHHH----HHhC
Q 007407 334 AKSVVAKGVRQI--------P-----------------KS--------ANKIRALRMALDEIPDSVRLWKAL----VEIS 376 (605)
Q Consensus 334 Ak~~l~~al~~~--------P-----------------~s--------~~a~~vl~kAle~~P~~~~lw~~l----~~le 376 (605)
+.....+++... | .+ ..+...|++|++..|+++..-..+ +...
T Consensus 413 gldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R 492 (799)
T KOG4162|consen 413 GLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQR 492 (799)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Confidence 223333333311 1 11 345567999999999998644333 2333
Q ss_pred CHHHHHHHHHHHHHhCC-CCHHHHHHHHHh----hcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHH------
Q 007407 377 SEEEARILLHRAVECCP-LDVELWLALVRL----ETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMV------ 444 (605)
Q Consensus 377 ~~e~A~~~l~rAl~~~P-~~~~lw~aLa~l----e~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a------ 444 (605)
+.+.|.....++++.+| .+...|+.||.+ +++.+|..+.+.++...|.|......-+.++ ..++..++
T Consensus 493 ~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~ 572 (799)
T KOG4162|consen 493 QLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIH 572 (799)
T ss_pred hHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHH
Confidence 77999999999999955 567889888765 4789999999999999988544433333333 33332222
Q ss_pred -------------------------------------HHHHHHHHHHh-------------ccCcc-c-------ccHHH
Q 007407 445 -------------------------------------GKIIERGIRAL-------------QGEEV-V-------IDRDT 466 (605)
Q Consensus 445 -------------------------------------~~i~~~al~~~-------------p~~~~-~-------~~~~~ 466 (605)
.+...++.... |...+ + .....
T Consensus 573 ~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~l 652 (799)
T KOG4162|consen 573 KLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKL 652 (799)
T ss_pred HHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHH
Confidence 22222211111 11111 0 13468
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 007407 467 WMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEK 546 (605)
Q Consensus 467 wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~ 546 (605)
|+..+....+.++.+.+...+.++-.++|. ....|+..+..+...|+..+|...|..|+.++|+++.+..++|.++.
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~~l---~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKIDPL---SASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLL 729 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcchh---hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 899999999999999999999999998887 89999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCCC
Q 007407 547 SYGCRESLIA--LLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSEE 604 (605)
Q Consensus 547 ~~g~~e~A~~--~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~~ 604 (605)
+.|+..-|.+ ++..|++.+|.++..|+.+|.+..+.|+.+.|-.+|.-|+++.+.+|-
T Consensus 730 e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 9998776666 999999999999999999999999999999999999999999998874
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.69 E-value=4.6e-14 Score=156.07 Aligned_cols=319 Identities=16% Similarity=0.139 Sum_probs=225.6
Q ss_pred hhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcCc----hhHHHH
Q 007407 262 SELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLARP----DEAKSV 337 (605)
Q Consensus 262 ~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~~----~~Ak~~ 337 (605)
...|++..|..++..+++.+|.++.+|..+|.+++..|+.++|.....-+-..+|++.+.|...+.+... ..|+-+
T Consensus 150 farg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 4459999999999999999999999999999999999999999999999999999999999998877533 355556
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHhCCCcHHHHHHH----HHhCCHHHHHHHHHHHHHhCCCCHHHH-HHHHH--------
Q 007407 338 VAKGVRQIPKSANKIRALRMALDEIPDSVRLWKAL----VEISSEEEARILLHRAVECCPLDVELW-LALVR-------- 404 (605)
Q Consensus 338 l~~al~~~P~s~~a~~vl~kAle~~P~~~~lw~~l----~~le~~e~A~~~l~rAl~~~P~~~~lw-~aLa~-------- 404 (605)
|.+||+.+ |.+.++.... -++++...|...|.+++..+|..---| ..++.
T Consensus 230 y~rAI~~~-----------------p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~ 292 (895)
T KOG2076|consen 230 YSRAIQAN-----------------PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFIT 292 (895)
T ss_pred HHHHHhcC-----------------CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHH
Confidence 66555554 4444433322 234567788888899998888322222 22222
Q ss_pred hhcHHHHHHHHHHHHHhCCC--CHHHHHHHHHHH-HcCCHHHHHHHHHHHHHH---------------------hccC--
Q 007407 405 LETYGVARSVLNKARKKLPK--ERAIWIAAAKLE-ANGNTSMVGKIIERGIRA---------------------LQGE-- 458 (605)
Q Consensus 405 le~~e~A~~vL~~al~~~p~--~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~---------------------~p~~-- 458 (605)
..+.+.|.+.|..++..... +.+-...++.|. ....++++...+...... +...
T Consensus 293 ~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~ 372 (895)
T KOG2076|consen 293 HNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGK 372 (895)
T ss_pred hhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCC
Confidence 12346777778877773221 112233344433 444455555554443320 0000
Q ss_pred cccccHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CHH
Q 007407 459 EVVIDRDT-WMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLT-KKN 536 (605)
Q Consensus 459 ~~~~~~~~-wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~-~~~ 536 (605)
+...+..+ .+..+....+.+...+| +.......+....+....++..+..+.+.|++.+|..+|..++...+. +..
T Consensus 373 ~~s~~l~v~rl~icL~~L~~~e~~e~--ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~ 450 (895)
T KOG2076|consen 373 ELSYDLRVIRLMICLVHLKERELLEA--LLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAF 450 (895)
T ss_pred CCCccchhHhHhhhhhcccccchHHH--HHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchh
Confidence 11122233 33333333444433333 333333333111347889999999999999999999999999988765 578
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCC
Q 007407 537 IWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPN 601 (605)
Q Consensus 537 ~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~ 601 (605)
+|+.+|.+++..|.+++|.+.|+++|...|++-++-..++.++.+.|+.++|.++|+.-+ +|+
T Consensus 451 vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~--~~D 513 (895)
T KOG2076|consen 451 VWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII--NPD 513 (895)
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc--CCC
Confidence 999999999999999999999999999999999999999999999999999999999876 554
No 35
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.68 E-value=5.1e-14 Score=150.21 Aligned_cols=325 Identities=14% Similarity=0.240 Sum_probs=243.1
Q ss_pred hhccHHHHHHHHHHHHH-hCCCCh-----HHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCC----HHHHHHHHhhcCc-
Q 007407 263 ELRDILKARKIVRAVTK-NSPKKP-----LGWIQAARLEELANEEAAARKLITKGCNMCPKN----EDVWLEACRLARP- 331 (605)
Q Consensus 263 ~~gd~~kAr~ll~~al~-~~P~~~-----~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~----~~lwle~a~L~~~- 331 (605)
..|+..+-...|..+++ .+|..+ ..|+..|++++..|+++.||.+++++++..-.- ..+|...+.++..
T Consensus 359 ~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh 438 (835)
T KOG2047|consen 359 YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRH 438 (835)
T ss_pred hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhh
Confidence 45667777788888886 478654 579999999999999999999999999875433 3679999888654
Q ss_pred ---hhHHHHHHHHHhhCCCcHHHHHHHHH---HHHhCCCcHHHHHHHHHhC----CHHHHHHHHHHHHHhCCCCHHHHHH
Q 007407 332 ---DEAKSVVAKGVRQIPKSANKIRALRM---ALDEIPDSVRLWKALVEIS----SEEEARILLHRAVECCPLDVELWLA 401 (605)
Q Consensus 332 ---~~Ak~~l~~al~~~P~s~~a~~vl~k---Ale~~P~~~~lw~~l~~le----~~e~A~~~l~rAl~~~P~~~~lw~a 401 (605)
+.|..++.+|.. .|.... +..|.. +-...-.|.++|..+++++ .++..+++|.+.++..--.+.+-..
T Consensus 439 ~~~~~Al~lm~~A~~-vP~~~~-~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N 516 (835)
T KOG2047|consen 439 ENFEAALKLMRRATH-VPTNPE-LEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN 516 (835)
T ss_pred hhHHHHHHHHHhhhc-CCCchh-hhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 466677777753 444411 000000 0001114678999999886 5689999999999987777777777
Q ss_pred HHHh-h---cHHHHHHHHHHHHHhCC--CCHHHHHHHH-H-HHHcC--CHHHHHHHHHHHHHHhccCcccccHHHHHHHH
Q 007407 402 LVRL-E---TYGVARSVLNKARKKLP--KERAIWIAAA-K-LEANG--NTSMVGKIIERGIRALQGEEVVIDRDTWMKEA 471 (605)
Q Consensus 402 La~l-e---~~e~A~~vL~~al~~~p--~~~~iwi~~a-~-Le~~g--~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A 471 (605)
+|.+ + .++++-++|++.+..+| .-.+||+.+. + +.+.| .++.++.+|++|++.+|.. ....+++.||
T Consensus 517 yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~---~aKtiyLlYA 593 (835)
T KOG2047|consen 517 YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPE---HAKTIYLLYA 593 (835)
T ss_pred HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHH
Confidence 7764 2 36889999999999885 4578999977 3 33443 5899999999999988742 4567899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHcC
Q 007407 472 EVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKK--NIWLKAAQLEKSYG 549 (605)
Q Consensus 472 ~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~--~~w~~la~l~~~~g 549 (605)
...+.-|-...|.+||+++...-+. .+....|..++.-....=-+..-|.+|++|++..|++. ..-..++.++.+.|
T Consensus 594 ~lEEe~GLar~amsiyerat~~v~~-a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklG 672 (835)
T KOG2047|consen 594 KLEEEHGLARHAMSIYERATSAVKE-AQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLG 672 (835)
T ss_pred HHHHHhhHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhh
Confidence 9999999889999999998764333 33555554443333222234667899999999999864 56678899999999
Q ss_pred CHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChHHHHHHHH
Q 007407 550 CRESLIALLRKAVTYCP--QAEVLWLMGAKEKWLAGDVPATRDILQ 593 (605)
Q Consensus 550 ~~e~A~~~lekAl~~~P--~~~~l~l~~a~~~~~~gd~~~Ar~il~ 593 (605)
..+.|+.+|.-+-+.|+ -+..+|..+-.++.++||-+--+++|.
T Consensus 673 EidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keMLR 718 (835)
T KOG2047|consen 673 EIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEMLR 718 (835)
T ss_pred hHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 99999999999999984 458899999999999999776666654
No 36
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.68 E-value=2.3e-13 Score=146.77 Aligned_cols=283 Identities=12% Similarity=0.068 Sum_probs=201.3
Q ss_pred hhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHH-HHHHHhhcCchhHHHHHHH
Q 007407 262 SELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDV-WLEACRLARPDEAKSVVAK 340 (605)
Q Consensus 262 ~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~l-wle~a~L~~~~~Ak~~l~~ 340 (605)
...||+++|++++.+.-+..+.-+-.++..|+.....|+++.|..++.++.+..|++.-. .+..++
T Consensus 95 ~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~------------- 161 (398)
T PRK10747 95 LAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVR------------- 161 (398)
T ss_pred HhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHH-------------
Confidence 345777777766666555433323334555666677777777777777777766655311 111111
Q ss_pred HHhhCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh----hcHHHHHHHHH
Q 007407 341 GVRQIPKSANKIRALRMALDEIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALVRL----ETYGVARSVLN 416 (605)
Q Consensus 341 al~~~P~s~~a~~vl~kAle~~P~~~~lw~~l~~le~~e~A~~~l~rAl~~~P~~~~lw~aLa~l----e~~e~A~~vL~ 416 (605)
.+...++++.|...++++++..|+++.+...++.+ ++++.|..+|.
T Consensus 162 ------------------------------l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~ 211 (398)
T PRK10747 162 ------------------------------IQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILP 211 (398)
T ss_pred ------------------------------HHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 12333477888888888888888888777665543 47888888888
Q ss_pred HHHHhCCCCHHHHH--------HHHH-HHHcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHH
Q 007407 417 KARKKLPKERAIWI--------AAAK-LEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAII 487 (605)
Q Consensus 417 ~al~~~p~~~~iwi--------~~a~-Le~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~ 487 (605)
+..+..+.++...- .+.. ..... ....+.+.++.+|.. .+.+...+..+|..+...|..+.|..++
T Consensus 212 ~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~----~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L 286 (398)
T PRK10747 212 SMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQ----GSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQII 286 (398)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc----CHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 88887766544222 1111 11111 223455555555432 1346788999999999999999999999
Q ss_pred HHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 007407 488 TNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQ 567 (605)
Q Consensus 488 ~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~ 567 (605)
+++++..++ ......++. ...++++++...++..++.+|+++.+++.+|.++...|++++|++.|+++++..|+
T Consensus 287 ~~~l~~~~~----~~l~~l~~~--l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~ 360 (398)
T PRK10747 287 LDGLKRQYD----ERLVLLIPR--LKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD 360 (398)
T ss_pred HHHHhcCCC----HHHHHHHhh--ccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 999995443 333333333 34589999999999999999999999999999999999999999999999999998
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHC
Q 007407 568 AEVLWLMGAKEKWLAGDVPATRDILQEAYAAI 599 (605)
Q Consensus 568 ~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~ 599 (605)
++. +..++.++.+.|+.++|..+|.+++...
T Consensus 361 ~~~-~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 361 AYD-YAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 655 5789999999999999999999999865
No 37
>PRK12370 invasion protein regulator; Provisional
Probab=99.66 E-value=4.9e-14 Score=158.30 Aligned_cols=235 Identities=13% Similarity=-0.012 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHh-------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHh----hcHHHH
Q 007407 349 ANKIRALRMALDEIPDSVRLWKALVEI-------------SSEEEARILLHRAVECCPLDVELWLALVRL----ETYGVA 411 (605)
Q Consensus 349 ~~a~~vl~kAle~~P~~~~lw~~l~~l-------------e~~e~A~~~l~rAl~~~P~~~~lw~aLa~l----e~~e~A 411 (605)
..|...|++|++..|++...|..++.. ++.++|...+++|++..|++..+|..++.+ +++++|
T Consensus 278 ~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A 357 (553)
T PRK12370 278 QQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVG 357 (553)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHH
Confidence 455666666666666666555433221 024566666666666666666666555432 355666
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007407 412 RSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNT 490 (605)
Q Consensus 412 ~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~a 490 (605)
...|+++++.+|+++.+|..++.+. ..|++++|...++++++..|.. ...+...+..+...|.+++|...++++
T Consensus 358 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~-----~~~~~~~~~~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 358 SLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR-----AAAGITKLWITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-----hhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence 6666666666666666666666544 6666666666666666665542 111222222333455566666666666
Q ss_pred HHhC-CCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---C
Q 007407 491 IEIG-VDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYC---P 566 (605)
Q Consensus 491 l~~~-p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~---P 566 (605)
+... |. ....+..++..+...|++++|+..+.+++...|....++..++.++...| +.|...+++.++.. |
T Consensus 433 l~~~~p~---~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 433 RSQHLQD---NPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHhcccc---CHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 6553 33 44455555566666666666666666666666666666666666555555 24445444444332 2
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 007407 567 QAEVLWLMGAKEKWLAGDVPATRDILQEAYA 597 (605)
Q Consensus 567 ~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~ 597 (605)
.++.. ++.++--.|+.+.+... .++.+
T Consensus 508 ~~~~~---~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 508 NNPGL---LPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred cCchH---HHHHHHHHhhhHHHHHH-HHhhc
Confidence 22211 34444445555555544 44443
No 38
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=7.1e-14 Score=145.34 Aligned_cols=332 Identities=15% Similarity=0.092 Sum_probs=242.2
Q ss_pred hhhccccccccCCccccCchhHHhhhhhhcccchhhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHH
Q 007407 228 TLKLDGISDSVTGLTVFDPSGYLTRMNDLKITTNSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKL 307 (605)
Q Consensus 228 ~~kld~~~~~~~~~~~~dp~~yl~~L~~~~~~~~~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~l 307 (605)
..++|++++-....++..|..- ...+.....+..+||.++..+-..++++.+|++..+++..|+..+..|++..|.--
T Consensus 128 ~kkY~eAIkyY~~AI~l~p~ep--iFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D 205 (606)
T KOG0547|consen 128 NKKYDEAIKYYTQAIELCPDEP--IFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFD 205 (606)
T ss_pred cccHHHHHHHHHHHHhcCCCCc--hhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHh
Confidence 4467777664434444455521 11133344578999999999999999999999999999999999999998877544
Q ss_pred HHHHHhh--------------------------------CCCCHHH-----HHHHH--hhc-----Cc---hh----HHH
Q 007407 308 ITKGCNM--------------------------------CPKNEDV-----WLEAC--RLA-----RP---DE----AKS 336 (605)
Q Consensus 308 l~~~l~~--------------------------------~P~~~~l-----wle~a--~L~-----~~---~~----Ak~ 336 (605)
+.-.|-. -|.-+.. ++... .+. .. +. +..
T Consensus 206 ~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~ 285 (606)
T KOG0547|consen 206 VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALE 285 (606)
T ss_pred hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHH
Confidence 3322211 0110000 00000 000 00 00 000
Q ss_pred H--------HHHHHhhC-------------------------------------CCcHHHHHHHHHHHHhCCCcHHHHHH
Q 007407 337 V--------VAKGVRQI-------------------------------------PKSANKIRALRMALDEIPDSVRLWKA 371 (605)
Q Consensus 337 ~--------l~~al~~~-------------------------------------P~s~~a~~vl~kAle~~P~~~~lw~~ 371 (605)
. |..+.... .++..+...|.+++..+|....++..
T Consensus 286 ~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~ 365 (606)
T KOG0547|consen 286 ALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIK 365 (606)
T ss_pred HHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHH
Confidence 0 00000000 01134667799999999998886654
Q ss_pred H----HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH----hhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHH
Q 007407 372 L----VEISSEEEARILLHRAVECCPLDVELWLALVR----LETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTS 442 (605)
Q Consensus 372 l----~~le~~e~A~~~l~rAl~~~P~~~~lw~aLa~----le~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~ 442 (605)
+ ++..+.++-.+.|.+|...+|+++++++.-++ |++|++|..-|++++...|.+.-.++.++-+. +++.+.
T Consensus 366 ~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~ 445 (606)
T KOG0547|consen 366 RAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIA 445 (606)
T ss_pred HHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHH
Confidence 3 44457788999999999999999999986654 46899999999999999999998899998655 888999
Q ss_pred HHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch---hhHHHHHHHHHHHHH-cCCHH
Q 007407 443 MVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEE---DKKRTWVADVEECKK-RGSIE 518 (605)
Q Consensus 443 ~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~---~~~~~~~~~a~~~~~-~g~~~ 518 (605)
.+.+.|+.++..+|. ..+.+-..|+++..++++++|...|..++.+.|... .+...++..|.+..+ .+++.
T Consensus 446 ~~m~~Fee~kkkFP~-----~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~ 520 (606)
T KOG0547|consen 446 ESMKTFEEAKKKFPN-----CPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDIN 520 (606)
T ss_pred HHHHHHHHHHHhCCC-----CchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHH
Confidence 999999999999987 467888899999999999999999999999987621 123333333333222 48999
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 007407 519 TARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCP 566 (605)
Q Consensus 519 ~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P 566 (605)
.|..++++|++++|....++..+|+++.+.|+.++|+++|++++.+.-
T Consensus 521 ~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 521 QAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred HHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988764
No 39
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=8e-14 Score=147.42 Aligned_cols=339 Identities=15% Similarity=0.096 Sum_probs=241.4
Q ss_pred hcccchhhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHH-----HHhhCCCCHHHHHHHHhh--
Q 007407 256 LKITTNSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITK-----GCNMCPKNEDVWLEACRL-- 328 (605)
Q Consensus 256 ~~~~~~~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~-----~l~~~P~~~~lwle~a~L-- 328 (605)
..++.+....+..+||..|+.++..++.+.+....+..-++.. .++-..+++. .+..+-.-....+++...
T Consensus 146 lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt--~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~ 223 (611)
T KOG1173|consen 146 LRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLT--AQEEFELLESLDLAMLTKEDVERLEILYELKLCKN 223 (611)
T ss_pred eeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcc--hhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhh
Confidence 3455667788899999999999999999988776554333221 1111222221 111111111112221110
Q ss_pred -cCc------hhHH--------HHHHHHHhhCCCc--HHHHHHHHHHHHhCCCcHHHHH----HHHHhCCHHHHHHHHHH
Q 007407 329 -ARP------DEAK--------SVVAKGVRQIPKS--ANKIRALRMALDEIPDSVRLWK----ALVEISSEEEARILLHR 387 (605)
Q Consensus 329 -~~~------~~Ak--------~~l~~al~~~P~s--~~a~~vl~kAle~~P~~~~lw~----~l~~le~~e~A~~~l~r 387 (605)
+.. +.+. -+..+|-...-.. ..-.++....++..|-+..... .+.++++.-.-.-+=.+
T Consensus 224 ~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~ 303 (611)
T KOG1173|consen 224 RNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHK 303 (611)
T ss_pred ccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHH
Confidence 000 0000 0000000000000 2334556677788887655332 23444443333334457
Q ss_pred HHHhCCCCHHHHHHHHHh----hcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccc
Q 007407 388 AVECCPLDVELWLALVRL----ETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVI 462 (605)
Q Consensus 388 Al~~~P~~~~lw~aLa~l----e~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~ 462 (605)
.|...|++.--|++++.+ ..+.+|++.|.++...+|+-...|+.+|... -+|..+.+...|.+|-+..+....
T Consensus 304 LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hl-- 381 (611)
T KOG1173|consen 304 LVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHL-- 381 (611)
T ss_pred HHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcc--
Confidence 788899999999998865 4789999999999999999999999999755 788899999999999999887533
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC----CC---H
Q 007407 463 DRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFL----TK---K 535 (605)
Q Consensus 463 ~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P----~~---~ 535 (605)
-.+-.+..+.+.++.+.|...+..++.+.|. .+-+....+-.....+.+.+|..+|+.++..-+ .. .
T Consensus 382 ---P~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~---Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~ 455 (611)
T KOG1173|consen 382 ---PSLYLGMEYMRTNNLKLAEKFFKQALAIAPS---DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWE 455 (611)
T ss_pred ---hHHHHHHHHHHhccHHHHHHHHHHHHhcCCC---cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchh
Confidence 2444566778889999999999999999999 566677777777888899999999999995432 22 3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCCC
Q 007407 536 NIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSEE 604 (605)
Q Consensus 536 ~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~~ 604 (605)
..|..+|.++++.+.+++|+..|++||..+|+++..+-..|-++...|+++.|...|.+|+-+.|+|..
T Consensus 456 p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~ 524 (611)
T KOG1173|consen 456 PTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIF 524 (611)
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHH
Confidence 568899999999999999999999999999999999999999999999999999999999999999853
No 40
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.63 E-value=2.6e-13 Score=132.63 Aligned_cols=189 Identities=17% Similarity=0.127 Sum_probs=163.1
Q ss_pred hcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHH
Q 007407 406 ETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCV 484 (605)
Q Consensus 406 e~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~ 484 (605)
++++.|...++++++..|.+..+|..++.+. ..|++++|..+++++++..|. ....|...+..+...|+++.|.
T Consensus 45 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~~~~~~~~~~g~~~~A~ 119 (234)
T TIGR02521 45 GDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-----NGDVLNNYGTFLCQQGKYEQAM 119 (234)
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHHcccHHHHH
Confidence 4788888888888888888888888888777 888889999999998887665 3457788888888889999999
Q ss_pred HHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007407 485 AIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTY 564 (605)
Q Consensus 485 ~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~ 564 (605)
..++.++...+. +.....|...+..+...|++++|...|.+++..+|++..+|..++.++...|++++|..++++++..
T Consensus 120 ~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 120 QQFEQAIEDPLY-PQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred HHHHHHHhcccc-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999998875322 2256678888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCC
Q 007407 565 CPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIP 600 (605)
Q Consensus 565 ~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P 600 (605)
.|.++..+...+.++...|+.++|+.+.+.+....|
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 199 YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 888888888889999899999999999888877655
No 41
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=1e-13 Score=149.34 Aligned_cols=282 Identities=15% Similarity=0.065 Sum_probs=223.4
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHh--hcCc--hhHHHHHHHHHhhCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHh
Q 007407 300 EEAAARKLITKGCNMCPKNEDVWLEACR--LARP--DEAKSVVAKGVRQIPKSANKIRALRMALDEIPDSVRLWKALVEI 375 (605)
Q Consensus 300 ~~~~Ar~ll~~~l~~~P~~~~lwle~a~--L~~~--~~Ak~~l~~al~~~P~s~~a~~vl~kAle~~P~~~~lw~~l~~l 375 (605)
+...|..+|++.-...++-.-+....++ ++.. +.|+.+|..+=+..|--..-..+| |.-||..
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiy---------ST~LWHL---- 400 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIY---------STTLWHL---- 400 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHH---------HHHHHHH----
Confidence 5678999999955566665533333333 3332 456666555443333221111111 2234543
Q ss_pred CCHHHHHHHH-HHHHHhCCCCHHHHHHHHHhh----cHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHH
Q 007407 376 SSEEEARILL-HRAVECCPLDVELWLALVRLE----TYGVARSVLNKARKKLPKERAIWIAAA-KLEANGNTSMVGKIIE 449 (605)
Q Consensus 376 e~~e~A~~~l-~rAl~~~P~~~~lw~aLa~le----~~e~A~~vL~~al~~~p~~~~iwi~~a-~Le~~g~~~~a~~i~~ 449 (605)
+.+-+..+| +..+...|.+++.|-++++.. +++.|++.+++|++.+|...=++-.+| .+-....+++|...|+
T Consensus 401 -q~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr 479 (638)
T KOG1126|consen 401 -QDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFR 479 (638)
T ss_pred -HhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHH
Confidence 223344444 457788999999999999753 789999999999999998654444444 2224446899999999
Q ss_pred HHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007407 450 RGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACT 529 (605)
Q Consensus 450 ~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~ 529 (605)
+||...|. ....|.-++..+.+++.++.|.-.|++|+.++|. +..+..-.+..+.+.|..++|+.+|++|+.
T Consensus 480 ~Al~~~~r-----hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~---nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ 551 (638)
T KOG1126|consen 480 KALGVDPR-----HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS---NSVILCHIGRIQHQLKRKDKALQLYEKAIH 551 (638)
T ss_pred hhhcCCch-----hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc---chhHHhhhhHHHHHhhhhhHHHHHHHHHHh
Confidence 99998876 6889999999999999999999999999999998 888888889999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCC
Q 007407 530 VFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSE 603 (605)
Q Consensus 530 ~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~ 603 (605)
.+|.++-.-+..|.++...+++++|+..|++..+..|+...++..+|+++-+.|+.+.|..-|.=|...+|.-.
T Consensus 552 ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 552 LDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred cCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998643
No 42
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=4.1e-13 Score=141.66 Aligned_cols=355 Identities=14% Similarity=0.059 Sum_probs=201.9
Q ss_pred hccccccccCCccccCchhHHhhhhhhcccchhhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHH
Q 007407 230 KLDGISDSVTGLTVFDPSGYLTRMNDLKITTNSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLIT 309 (605)
Q Consensus 230 kld~~~~~~~~~~~~dp~~yl~~L~~~~~~~~~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~ 309 (605)
+++.++..+...+.+||.+. .|.|.....+...|++.+|..=-.+.++.+|+-+.+|...+--..-.|+++.|+.-|.
T Consensus 17 d~~~ai~~~t~ai~l~p~nh--vlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~ 94 (539)
T KOG0548|consen 17 DFETAIRLFTEAIMLSPTNH--VLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYS 94 (539)
T ss_pred cHHHHHHHHHHHHccCCCcc--chhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHH
Confidence 44555555555667888854 3444445568899999999999999999999999999998888888999999999999
Q ss_pred HHHhhCCCCHHHHHHHHhhcCch----------------------------hHHHHHHHHHhhCCCcHHH---HHHHHHH
Q 007407 310 KGCNMCPKNEDVWLEACRLARPD----------------------------EAKSVVAKGVRQIPKSANK---IRALRMA 358 (605)
Q Consensus 310 ~~l~~~P~~~~lwle~a~L~~~~----------------------------~Ak~~l~~al~~~P~s~~a---~~vl~kA 358 (605)
+|++..|+|..+.-.++..+..+ .+-..+...++.+|.+... -..+.++
T Consensus 95 ~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a 174 (539)
T KOG0548|consen 95 EGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKA 174 (539)
T ss_pred HHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHH
Confidence 99999999998876665544211 1112223334444444000 0001111
Q ss_pred HH---------------------hCCC------------cHH------HHHHHHHhC-------CHHHHHHHHHHHHHhC
Q 007407 359 LD---------------------EIPD------------SVR------LWKALVEIS-------SEEEARILLHRAVECC 392 (605)
Q Consensus 359 le---------------------~~P~------------~~~------lw~~l~~le-------~~e~A~~~l~rAl~~~ 392 (605)
+- ..|. ... --....+++ +++.|+..|..+++..
T Consensus 175 ~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~ 254 (539)
T KOG0548|consen 175 DGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA 254 (539)
T ss_pred HHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh
Confidence 00 0000 000 000001111 3456666777777766
Q ss_pred CCCHHHHHHHH----HhhcHHHHHHHHHHHHHhCCCCHHHHHHHHH-------HH-HcCCHHHHHHHHHHHHHHhccCcc
Q 007407 393 PLDVELWLALV----RLETYGVARSVLNKARKKLPKERAIWIAAAK-------LE-ANGNTSMVGKIIERGIRALQGEEV 460 (605)
Q Consensus 393 P~~~~lw~aLa----~le~~e~A~~vL~~al~~~p~~~~iwi~~a~-------Le-~~g~~~~a~~i~~~al~~~p~~~~ 460 (605)
.+...+...+ .+..+...+....++++..-....-+..+++ .. ..++++.+++.|++++.......
T Consensus 255 -~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~- 332 (539)
T KOG0548|consen 255 -TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPD- 332 (539)
T ss_pred -hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHH-
Confidence 5544443322 2224455555555555443322111111221 22 33456666677777666543210
Q ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 007407 461 VIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLK 540 (605)
Q Consensus 461 ~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~ 540 (605)
...+....+++........-++|+ ...--...+..+...|+|..|...|.+|++.+|++..+|-.
T Consensus 333 ------------~ls~lk~~Ek~~k~~e~~a~~~pe---~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsN 397 (539)
T KOG0548|consen 333 ------------LLSKLKEAEKALKEAERKAYINPE---KAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSN 397 (539)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHhhChh---HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHH
Confidence 000111112222222222222333 22222233555666777777777777777777777777777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCC
Q 007407 541 AAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSE 603 (605)
Q Consensus 541 la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~ 603 (605)
.|.++.+.|.+..|++-.+++++.+|+....|+.-|.++....++++|.+.|.+|++.+|++.
T Consensus 398 RAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~ 460 (539)
T KOG0548|consen 398 RAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNA 460 (539)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhH
Confidence 777777777777777777777777777777777777777667777777777777777777654
No 43
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.62 E-value=2.6e-13 Score=135.64 Aligned_cols=309 Identities=12% Similarity=0.029 Sum_probs=212.6
Q ss_pred hhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcC----chhHHHH
Q 007407 262 SELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLAR----PDEAKSV 337 (605)
Q Consensus 262 ~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~----~~~Ak~~ 337 (605)
...|.+..|...|-.+++.+|++..+.+..|..+...|+-..|..-+.+.++.-|+...+.+..+.+.. .+.|.+-
T Consensus 49 la~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~D 128 (504)
T KOG0624|consen 49 LARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEAD 128 (504)
T ss_pred HHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHH
Confidence 455666677777777777777777777777777777777777777777777777766555555443321 1456666
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHh---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHh----hcHHH
Q 007407 338 VAKGVRQIPKSANKIRALRMALDEIPDSVRLWKALVEI---SSEEEARILLHRAVECCPLDVELWLALVRL----ETYGV 410 (605)
Q Consensus 338 l~~al~~~P~s~~a~~vl~kAle~~P~~~~lw~~l~~l---e~~e~A~~~l~rAl~~~P~~~~lw~aLa~l----e~~e~ 410 (605)
+...|.+.|.+.....+..+. ..+-+...+...+.+. ++...|+.++...++.+|.+..++..-+.- .++..
T Consensus 129 F~~vl~~~~s~~~~~eaqskl-~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~ 207 (504)
T KOG0624|consen 129 FDQVLQHEPSNGLVLEAQSKL-ALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKK 207 (504)
T ss_pred HHHHHhcCCCcchhHHHHHHH-HhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHH
Confidence 777777777552222222221 1111112222233332 367788888888888888888777654432 35667
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcc--c-----ccHHHHHHHHHHHHHcCCHHH
Q 007407 411 ARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEV--V-----IDRDTWMKEAEVADRAGSVVT 482 (605)
Q Consensus 411 A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~--~-----~~~~~wl~~A~~~e~~g~~~~ 482 (605)
|+.-+..+-+...++.+.++...+|+ .-|+.....+.++.+++..|++.. + .....-+.-+......+.+..
T Consensus 208 AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~ 287 (504)
T KOG0624|consen 208 AIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTE 287 (504)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 77777777777777788888888777 888888888888888888777532 0 011122333455566778899
Q ss_pred HHHHHHHHHHhCCCch-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007407 483 CVAIITNTIEIGVDEE-DKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKA 561 (605)
Q Consensus 483 A~~i~~~al~~~p~~~-~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekA 561 (605)
|.+-.+.++..+|+.+ -.....-.....+...+++-+|+..+.++|..+|++..++...|..+.-...++.|+.-|++|
T Consensus 288 cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A 367 (504)
T KOG0624|consen 288 CLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKA 367 (504)
T ss_pred HHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 9999999999998832 122223333456677889999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCHHH
Q 007407 562 VTYCPQAEVL 571 (605)
Q Consensus 562 l~~~P~~~~l 571 (605)
++.++.+..+
T Consensus 368 ~e~n~sn~~~ 377 (504)
T KOG0624|consen 368 LELNESNTRA 377 (504)
T ss_pred HhcCcccHHH
Confidence 9999977544
No 44
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=99.59 E-value=2.2e-12 Score=134.94 Aligned_cols=420 Identities=18% Similarity=0.216 Sum_probs=248.5
Q ss_pred cCCccccchhhhhhcccccccccchhHhHhhhhhhccccccCCCcccCCCCc---ccccchhhhhhhhhhhhhhhccccc
Q 007407 159 RIPEIGDYSRRNKRKRFDSFVPVPDSLLQKARQEQQHVIALDPSSRAAGGAE---SVVTDLTAVGEGRGKILTLKLDGIS 235 (605)
Q Consensus 159 ~~pe~~d~~~~~~~~~~~~~~~~pd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~i~~~R~~~l~~kld~~~ 235 (605)
.|||.-|+-+| .-|++.-=+.|.+.|. .+..-|..++..-.... .+.++|.++...|.+-...++.-.-
T Consensus 12 ~lpElEdl~~~------giFt~dEi~~Ivk~Rr--~fE~kL~rr~~~i~Dfi~YI~YE~nl~~lr~kR~Kk~~~k~S~sd 83 (568)
T KOG2396|consen 12 MLPELEDLKRK------GIFTRDEIREIVKKRR--DFELKLQRRTLSIEDFINYIQYEINLEELRAKRRKKKRVKYSFSD 83 (568)
T ss_pred hchHHHHHHHc------CCCCHHHHHHHHHHHH--HHHHHHccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhcccccch
Confidence 67888888555 3677666666654332 22223332221110000 1578999999999974333332110
Q ss_pred cccC-----------CccccCchhHHhhhhhhcccchhhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-hcCHHH
Q 007407 236 DSVT-----------GLTVFDPSGYLTRMNDLKITTNSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEEL-ANEEAA 303 (605)
Q Consensus 236 ~~~~-----------~~~~~dp~~yl~~L~~~~~~~~~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~-~g~~~~ 303 (605)
.++. ..-.-|++-|+..+.. ..+.+.+.+.-.+|.+++..+|++++.||.+|.++.. .-+++.
T Consensus 84 ~si~~rIv~lyr~at~rf~~D~~lW~~yi~f-----~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~s 158 (568)
T KOG2396|consen 84 DSIPNRIVFLYRRATNRFNGDVKLWLSYIAF-----CKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIES 158 (568)
T ss_pred hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH-----HHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHH
Confidence 0110 1112378888777754 3345558888899999999999999999999999955 445999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHhhcCchhHHH-----H-----------HHHHHh----hCCCc----------H----
Q 007407 304 ARKLITKGCNMCPKNEDVWLEACRLARPDEAKS-----V-----------VAKGVR----QIPKS----------A---- 349 (605)
Q Consensus 304 Ar~ll~~~l~~~P~~~~lwle~a~L~~~~~Ak~-----~-----------l~~al~----~~P~s----------~---- 349 (605)
||.++.+|++.||+++.+|.++.+++.....+. . +.+... ..+.. .
T Consensus 159 aRalflrgLR~npdsp~Lw~eyfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~ 238 (568)
T KOG2396|consen 159 ARALFLRGLRFNPDSPKLWKEYFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVA 238 (568)
T ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHH
Confidence 999999999999999999999999864311110 0 011000 00000 0
Q ss_pred ---H-----HHHHHHHHHHhCCCcHHHHHHHHHh----------C-------------CHHHHHHHHHHHHHhCCCCHHH
Q 007407 350 ---N-----KIRALRMALDEIPDSVRLWKALVEI----------S-------------SEEEARILLHRAVECCPLDVEL 398 (605)
Q Consensus 350 ---~-----a~~vl~kAle~~P~~~~lw~~l~~l----------e-------------~~e~A~~~l~rAl~~~P~~~~l 398 (605)
. -+.++.-.-...|.++.+|..+.+- . ..+-...+|+.+++..|+. .+
T Consensus 239 ~~~d~~kel~k~i~d~~~~~~~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~l~t~-sm 317 (568)
T KOG2396|consen 239 EKFDFLKELQKNIIDDLQSKAPDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKTLPTE-SM 317 (568)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHHhhHH-HH
Confidence 0 1122333334578888888765321 1 1134557899999988874 45
Q ss_pred HHHHHHh--hcH--------HHHHHHHHHHH-----------------------------------HhCCCCHHHHHHHH
Q 007407 399 WLALVRL--ETY--------GVARSVLNKAR-----------------------------------KKLPKERAIWIAAA 433 (605)
Q Consensus 399 w~aLa~l--e~~--------e~A~~vL~~al-----------------------------------~~~p~~~~iwi~~a 433 (605)
|..++.+ +.. ..-..+++++. ..+.++..+|....
T Consensus 318 ~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s~k~~~~kl 397 (568)
T KOG2396|consen 318 WECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFRDSGKMWQLKL 397 (568)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhcchHHHHHHHH
Confidence 5433321 100 00111111111 12233445555544
Q ss_pred HHH--HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhC-CCchhhHHHHHHHH
Q 007407 434 KLE--ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSV--VTCVAIITNTIEIG-VDEEDKKRTWVADV 508 (605)
Q Consensus 434 ~Le--~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~--~~A~~i~~~al~~~-p~~~~~~~~~~~~a 508 (605)
++. .+.+.. -+|......+...-.......|...+ + ...+ ..-..|+..+.+.. ++ ...+--.+.
T Consensus 398 ~~~~~s~sD~q---~~f~~l~n~~r~~~~s~~~~~w~s~~---~-~dsl~~~~~~~Ii~a~~s~~~~~---~~tl~s~~l 467 (568)
T KOG2396|consen 398 QVLIESKSDFQ---MLFEELFNHLRKQVCSELLISWASAS---E-GDSLQEDTLDLIISALLSVIGAD---SVTLKSKYL 467 (568)
T ss_pred HHHHhhcchhH---HHHHHHHHHHHHHhcchhHHHHHHHh---h-ccchhHHHHHHHHHHHHHhcCCc---eeehhHHHH
Confidence 322 111211 12222221111100001223333322 1 1112 22234455544432 22 233333345
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 007407 509 EECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSY--GCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVP 586 (605)
Q Consensus 509 ~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~--g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~ 586 (605)
+.+.+.+-+..|+.+|......-|-+..++....+++... -+...++++|+.|+.....++.+|..|-.++...|..+
T Consensus 468 ~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~g~~e 547 (568)
T KOG2396|consen 468 DWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKEELPLGRPE 547 (568)
T ss_pred HHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHhhccCCCcc
Confidence 5677888899999999999999999999999999998754 24788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-CCCC
Q 007407 587 ATRDILQEAYAA-IPNS 602 (605)
Q Consensus 587 ~Ar~il~kAl~~-~P~~ 602 (605)
.|-.+|.+|++. +|.+
T Consensus 548 n~~~~~~ra~ktl~~~~ 564 (568)
T KOG2396|consen 548 NCGQIYWRAMKTLQGES 564 (568)
T ss_pred cccHHHHHHHHhhChhh
Confidence 999999999974 4544
No 45
>PRK12370 invasion protein regulator; Provisional
Probab=99.58 E-value=6.4e-13 Score=149.36 Aligned_cols=209 Identities=11% Similarity=-0.034 Sum_probs=181.3
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHhh-------------cHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHH
Q 007407 380 EARILLHRAVECCPLDVELWLALVRLE-------------TYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVG 445 (605)
Q Consensus 380 ~A~~~l~rAl~~~P~~~~lw~aLa~le-------------~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~ 445 (605)
+|+.+|++|++..|++..+|..++..+ .++.|...++++++..|+++.+|..++.+. ..|++++|.
T Consensus 279 ~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~ 358 (553)
T PRK12370 279 QALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGS 358 (553)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH
Confidence 488899999999999999887666421 268899999999999999999999999877 899999999
Q ss_pred HHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007407 446 KIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFS 525 (605)
Q Consensus 446 ~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~ 525 (605)
..|+++++..|. +...|..+|..+...|.+++|...+++++..+|. +...++..+..+...|++++|+..++
T Consensus 359 ~~~~~Al~l~P~-----~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~---~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 359 LLFKQANLLSPI-----SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT---RAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred HHHHHHHHhCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---ChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 999999999876 5678999999999999999999999999999998 44444444555667899999999999
Q ss_pred HHHHhc-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007407 526 PACTVF-LTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAA 598 (605)
Q Consensus 526 ~al~~~-P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~ 598 (605)
+++... |+.+.++..+|.++...|++++|+..+++++...|.+...+..++..+...| ++|...+++.++.
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 999875 8899999999999999999999999999999888988888888888877777 4788878776653
No 46
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.58 E-value=1.6e-11 Score=129.42 Aligned_cols=331 Identities=16% Similarity=0.165 Sum_probs=197.1
Q ss_pred hhhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhc---Cc--hhHH
Q 007407 261 NSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLA---RP--DEAK 335 (605)
Q Consensus 261 ~~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~---~~--~~Ak 335 (605)
+.+..-+++.|..+++.+...|..+.+|...++-+...++++....+|.+++-.- -+.++|..++..- .+ ...+
T Consensus 29 e~qt~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv-LnlDLW~lYl~YVR~~~~~~~~~r 107 (656)
T KOG1914|consen 29 EAQTQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV-LNLDLWKLYLSYVRETKGKLFGYR 107 (656)
T ss_pred HHccCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-hhHhHHHHHHHHHHHHccCcchHH
Confidence 3455589999999999999999999999999999999999999999999987653 5699997776432 11 2333
Q ss_pred HHHHHHHh-------hCCCc--------------------------HHHHHHHHHHHHhCCCc-HHHHHHHHHhC-----
Q 007407 336 SVVAKGVR-------QIPKS--------------------------ANKIRALRMALDEIPDS-VRLWKALVEIS----- 376 (605)
Q Consensus 336 ~~l~~al~-------~~P~s--------------------------~~a~~vl~kAle~~P~~-~~lw~~l~~le----- 376 (605)
....+|.. ..+.| +..+++|+|||..--++ .++|+-+..+|
T Consensus 108 ~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~ 187 (656)
T KOG1914|consen 108 EKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINI 187 (656)
T ss_pred HHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHH
Confidence 33333322 22333 45678899998654444 47898876554
Q ss_pred ------------CHHHHHHHHHHHHHh----------CC--------CCHHHHHHHHHhhc------------HHHHHHH
Q 007407 377 ------------SEEEARILLHRAVEC----------CP--------LDVELWLALVRLET------------YGVARSV 414 (605)
Q Consensus 377 ------------~~e~A~~~l~rAl~~----------~P--------~~~~lw~aLa~le~------------~e~A~~v 414 (605)
.+-.|+.+++..... +| ..+++|..++..+. -....=+
T Consensus 188 ~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~ya 267 (656)
T KOG1914|consen 188 ITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYA 267 (656)
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHH
Confidence 234666666655332 11 13568988887762 1234447
Q ss_pred HHHHHHhCCCCHHHHHHHHHHH-HcCC--------------HHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCC
Q 007407 415 LNKARKKLPKERAIWIAAAKLE-ANGN--------------TSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGS 479 (605)
Q Consensus 415 L~~al~~~p~~~~iwi~~a~Le-~~g~--------------~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~ 479 (605)
++.++...+-.+++|+.++++- ..++ .+++.+++++++..+... +...+..++...+..-.
T Consensus 268 yeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~----~~~Ly~~~a~~eE~~~~ 343 (656)
T KOG1914|consen 268 YEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKE----NKLLYFALADYEESRYD 343 (656)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhHHHhcc
Confidence 8999999999999999987532 3333 568888999988776432 23334444443332221
Q ss_pred ---HHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-cCCHHHHH
Q 007407 480 ---VVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKS-YGCRESLI 555 (605)
Q Consensus 480 ---~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~-~g~~e~A~ 555 (605)
.+....++.+++.....+ ..-+|+.+.....+..-+..||.+|.+|-+.--....++...|.++.. .++.+-|.
T Consensus 344 ~n~~~~~~~~~~~ll~~~~~~--~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~Af 421 (656)
T KOG1914|consen 344 DNKEKKVHEIYNKLLKIEDID--LTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAF 421 (656)
T ss_pred cchhhhhHHHHHHHHhhhccC--CceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHH
Confidence 333445555555442221 122344444444444445555555555543322223444444444433 24444555
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007407 556 ALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAA 598 (605)
Q Consensus 556 ~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~ 598 (605)
.+|+-++..+++++..-+.|..++...|+-..||.+|++++..
T Consensus 422 rIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 422 RIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 5555555555555555555555554555555555555555443
No 47
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=1.2e-11 Score=128.38 Aligned_cols=290 Identities=13% Similarity=0.115 Sum_probs=211.9
Q ss_pred hhhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHH-----H--hhcCchh
Q 007407 261 NSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEA-----C--RLARPDE 333 (605)
Q Consensus 261 ~~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~-----a--~L~~~~~ 333 (605)
..+.|...+|+..|..++...|-+-++|+.+..+.. ..+.+..+ +..-|.+ ..|..- + .++..+.
T Consensus 174 ~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit---~~e~~~~l----~~~l~~~-~h~M~~~F~~~a~~el~q~~e 245 (559)
T KOG1155|consen 174 LKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELIT---DIEILSIL----VVGLPSD-MHWMKKFFLKKAYQELHQHEE 245 (559)
T ss_pred HHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhc---hHHHHHHH----HhcCccc-chHHHHHHHHHHHHHHHHHHH
Confidence 468889999999999999999999999999877652 12222211 1112221 112111 1 1111122
Q ss_pred HHHHHHHHHhh-CCCc-----------------HHHHHHHHHHHHhCCCcHH---HHHH--------------H------
Q 007407 334 AKSVVAKGVRQ-IPKS-----------------ANKIRALRMALDEIPDSVR---LWKA--------------L------ 372 (605)
Q Consensus 334 Ak~~l~~al~~-~P~s-----------------~~a~~vl~kAle~~P~~~~---lw~~--------------l------ 372 (605)
+..-+...+.. .|.+ +.+..+|+..+...|-... ++.. +
T Consensus 246 ~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~i 325 (559)
T KOG1155|consen 246 ALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNI 325 (559)
T ss_pred HHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHh
Confidence 22222222222 2333 4556666666666664322 1110 0
Q ss_pred -----------HHhC----CHHHHHHHHHHHHHhCCCCHHHHHHHH----HhhcHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 007407 373 -----------VEIS----SEEEARILLHRAVECCPLDVELWLALV----RLETYGVARSVLNKARKKLPKERAIWIAAA 433 (605)
Q Consensus 373 -----------~~le----~~e~A~~~l~rAl~~~P~~~~lw~aLa----~le~~e~A~~vL~~al~~~p~~~~iwi~~a 433 (605)
++++ +-+.|..+|++||+.+|....+|..++ .+.....|...|++|++.+|.+..+|+.+|
T Consensus 326 dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLG 405 (559)
T KOG1155|consen 326 DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLG 405 (559)
T ss_pred ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhh
Confidence 0111 238999999999999999999998765 345678899999999999999999999999
Q ss_pred HHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHH
Q 007407 434 KLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECK 512 (605)
Q Consensus 434 ~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~ 512 (605)
+.+ -.+=+.-|.-+|++|++.-|. +..+|..+++.+++.+..++|...|.+++..+.. +..+++.+|.++.
T Consensus 406 QaYeim~Mh~YaLyYfqkA~~~kPn-----DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt---e~~~l~~LakLye 477 (559)
T KOG1155|consen 406 QAYEIMKMHFYALYYFQKALELKPN-----DSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT---EGSALVRLAKLYE 477 (559)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCC-----chHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc---chHHHHHHHHHHH
Confidence 866 777788899999999998765 7889999999999999999999999999998755 7788999999999
Q ss_pred HcCCHHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 007407 513 KRGSIETARAIFSPACTV-------FLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCP 566 (605)
Q Consensus 513 ~~g~~~~A~~i~~~al~~-------~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P 566 (605)
+.++.++|-..|++.++. .|+-..+...|+..+.+++++++|..+.-+++...+
T Consensus 478 ~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~ 538 (559)
T KOG1155|consen 478 ELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGET 538 (559)
T ss_pred HHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCc
Confidence 999999999999999984 465566666689999999999999887777765543
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.55 E-value=6.5e-12 Score=136.10 Aligned_cols=251 Identities=14% Similarity=0.045 Sum_probs=191.4
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHh----hcHHHHHHHHHHHH
Q 007407 349 ANKIRALRMALDEIPDSVRLWKALVE----ISSEEEARILLHRAVECCPLDV-ELWLALVRL----ETYGVARSVLNKAR 419 (605)
Q Consensus 349 ~~a~~vl~kAle~~P~~~~lw~~l~~----le~~e~A~~~l~rAl~~~P~~~-~lw~aLa~l----e~~e~A~~vL~~al 419 (605)
..|.+.+.++....|+..-.+...++ .++++.|..+|.++++..|++. .+...++++ ++++.|...+++++
T Consensus 101 ~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~ 180 (409)
T TIGR00540 101 AKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLL 180 (409)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 45667777777888876655554443 3689999999999999999984 566555553 57999999999999
Q ss_pred HhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 007407 420 KKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVI---DRDTWMKEAEVADRAGSVVTCVAIITNTIEIGV 495 (605)
Q Consensus 420 ~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~---~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p 495 (605)
+..|.++.++..++.+. ..|+.+.+..++.+..+.....+... ....|... ...+..+.....+..+....|
T Consensus 181 ~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~----l~~~~~~~~~~~L~~~~~~~p 256 (409)
T TIGR00540 181 EMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGL----LDEAMADEGIDGLLNWWKNQP 256 (409)
T ss_pred HhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH----HHHHHHhcCHHHHHHHHHHCC
Confidence 99999999999999888 99999999999999887632211000 01122111 122222334456667777666
Q ss_pred Cc-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--H
Q 007407 496 DE-EDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIW--LKAAQLEKSYGCRESLIALLRKAVTYCPQAE--V 570 (605)
Q Consensus 496 ~~-~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w--~~la~l~~~~g~~e~A~~~lekAl~~~P~~~--~ 570 (605)
.. .++..+++..+..+...|++++|..+++++++.+|++.... ..........++.+.+++.++++++..|+++ .
T Consensus 257 ~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ 336 (409)
T TIGR00540 257 RHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCC 336 (409)
T ss_pred HHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHH
Confidence 31 23788999999999999999999999999999999987532 2222233345788999999999999999999 8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHH--HHHHHCCCCC
Q 007407 571 LWLMGAKEKWLAGDVPATRDILQ--EAYAAIPNSE 603 (605)
Q Consensus 571 l~l~~a~~~~~~gd~~~Ar~il~--kAl~~~P~~~ 603 (605)
+.+.+|+++.+.|++++|++.|+ .+++..|+++
T Consensus 337 ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~ 371 (409)
T TIGR00540 337 INRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN 371 (409)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH
Confidence 89999999999999999999999 6888899764
No 49
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.54 E-value=3.7e-13 Score=143.04 Aligned_cols=224 Identities=16% Similarity=0.067 Sum_probs=170.6
Q ss_pred HHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhh----cHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHH
Q 007407 371 ALVEISSEEEARILLHRAVECCPLDVELWLALVRLE----TYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVG 445 (605)
Q Consensus 371 ~l~~le~~e~A~~~l~rAl~~~P~~~~lw~aLa~le----~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~ 445 (605)
.+++-++..+|.-.|+.||+..|++.++|.-|+... .-..|+..|.++++..|++.+++..+|--+ .+|.-..|.
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 344445677888888889999999999988886543 345688888889999999888888888666 677777888
Q ss_pred HHHHHHHHHhccCcccccHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCC
Q 007407 446 KIIERGIRALQGEEVVIDRDTWMKEAEVADRAG---------SVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGS 516 (605)
Q Consensus 446 ~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g---------~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~ 516 (605)
+++.+.|...|.. .|+.-+..-+..+ .......+|-.+....|. ..++++...++-+|...|.
T Consensus 374 ~~L~~Wi~~~p~y-------~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~-~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 374 KMLDKWIRNKPKY-------VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPT-KIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred HHHHHHHHhCccc-------hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCC-CCChhHHhhhHHHHhcchH
Confidence 8888887776542 1221111111100 123334455555555553 1267777888888888999
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 007407 517 IETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAY 596 (605)
Q Consensus 517 ~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl 596 (605)
|++|+.+|+.||...|++..+|..||..+..-.+.++|+..|++|+++.|....+++.+|..+...|.+++|.+.|-.||
T Consensus 446 fdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999888889999999999999999999999999999989999999999999999
Q ss_pred HHCCCC
Q 007407 597 AAIPNS 602 (605)
Q Consensus 597 ~~~P~~ 602 (605)
.+.+++
T Consensus 526 ~mq~ks 531 (579)
T KOG1125|consen 526 SMQRKS 531 (579)
T ss_pred Hhhhcc
Confidence 888763
No 50
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.53 E-value=9.3e-11 Score=139.04 Aligned_cols=316 Identities=13% Similarity=0.064 Sum_probs=213.1
Q ss_pred hhhhccHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCC-CCHHHHHHHHhhcCchhHHHHH
Q 007407 261 NSELRDILKARKIVRAVTKNSPK-KPLGWIQAARLEELANEEAAARKLITKGCNMCP-KNEDVWLEACRLARPDEAKSVV 338 (605)
Q Consensus 261 ~~~~gd~~kAr~ll~~al~~~P~-~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P-~~~~lwle~a~L~~~~~Ak~~l 338 (605)
+...|+++.|+.+|..+.+..+. +...|..+...+.+.|+++.|..++.++.+... -+...|-..+..+...
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~------ 520 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA------ 520 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC------
Confidence 45666677777777666665322 344566666666666777777777766665322 2445554444332110
Q ss_pred HHHHhhCCCcHHHHHHHHHHHH--hCCCcHHHHHHH----HHhCCHHHHHHHHHHHHHh----CCCCHHHHHH----HHH
Q 007407 339 AKGVRQIPKSANKIRALRMALD--EIPDSVRLWKAL----VEISSEEEARILLHRAVEC----CPLDVELWLA----LVR 404 (605)
Q Consensus 339 ~~al~~~P~s~~a~~vl~kAle--~~P~~~~lw~~l----~~le~~e~A~~~l~rAl~~----~P~~~~lw~a----La~ 404 (605)
..-..|.++|+.... ..|+ ...|..+ .+.++.++|..+|.++.+. .|+. ..|.. +++
T Consensus 521 -------G~~eeAl~lf~~M~~~Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~-vTynaLI~ay~k 591 (1060)
T PLN03218 521 -------GQVAKAFGAYGIMRSKNVKPD-RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH-ITVGALMKACAN 591 (1060)
T ss_pred -------cCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHH
Confidence 000233344444432 2354 3344444 3445788899988888752 4553 34433 345
Q ss_pred hhcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHH
Q 007407 405 LETYGVARSVLNKARKKL-PKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVT 482 (605)
Q Consensus 405 le~~e~A~~vL~~al~~~-p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~ 482 (605)
.+.++.|.++|+.+.+.. +.+...|..+.... +.|+.++|..+|.+..+. |+.++...|......+.+.|.++.
T Consensus 592 ~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~----Gv~PD~~TynsLI~a~~k~G~~ee 667 (1060)
T PLN03218 592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK----GVKPDEVFFSALVDVAGHAGDLDK 667 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHhCCCHHH
Confidence 567888999998888775 45667788877766 888899999888887653 344466677777888888888999
Q ss_pred HHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007407 483 CVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTV--FLTKKNIWLKAAQLEKSYGCRESLIALLRK 560 (605)
Q Consensus 483 A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~--~P~~~~~w~~la~l~~~~g~~e~A~~~lek 560 (605)
|..++..+...+.. + +..+|..++..|.+.|++++|..+|+..... .| +...|..++..+.+.|++++|.++|++
T Consensus 668 A~~l~~eM~k~G~~-p-d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~e 744 (1060)
T PLN03218 668 AFEILQDARKQGIK-L-GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSE 744 (1060)
T ss_pred HHHHHHHHHHcCCC-C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999888887643 2 4667888888888999999999999887654 34 457788888889999999999999998
Q ss_pred HHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHC
Q 007407 561 AVTY--CPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAI 599 (605)
Q Consensus 561 Al~~--~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~ 599 (605)
.... .|+ ...|..+...+.+.|+++.|..++.++.+..
T Consensus 745 M~~~Gi~Pd-~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G 784 (1060)
T PLN03218 745 MKRLGLCPN-TITYSILLVASERKDDADVGLDLLSQAKEDG 784 (1060)
T ss_pred HHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 7765 354 4455555567778889999999988887754
No 51
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=99.53 E-value=3.9e-11 Score=128.93 Aligned_cols=347 Identities=18% Similarity=0.191 Sum_probs=237.0
Q ss_pred cCchhHHhhhhhhcccchhhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHH
Q 007407 244 FDPSGYLTRMNDLKITTNSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWL 323 (605)
Q Consensus 244 ~dp~~yl~~L~~~~~~~~~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwl 323 (605)
.|-.+|.+-+.. -....++..+|..|.+.+...|.....|...|..+.+.|....+..++++|+.--|.+.++|+
T Consensus 43 ~~f~~wt~li~~-----~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~ 117 (577)
T KOG1258|consen 43 LDFDAWTTLIQE-----NDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWL 117 (577)
T ss_pred hcccchHHHHhc-----cCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHH
Confidence 455566433321 133445699999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCc-----hhHHHHHHHHHhhCCCc--------------------HHHHHHHHHHHHhCCC----cHHHHHHHHH
Q 007407 324 EACRLARP-----DEAKSVVAKGVRQIPKS--------------------ANKIRALRMALDEIPD----SVRLWKALVE 374 (605)
Q Consensus 324 e~a~L~~~-----~~Ak~~l~~al~~~P~s--------------------~~a~~vl~kAle~~P~----~~~lw~~l~~ 374 (605)
.++..... ..-+..|++|+..+..+ .....+|++.|+.--+ ....|+.+++
T Consensus 118 ~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~ 197 (577)
T KOG1258|consen 118 SYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLN 197 (577)
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHh
Confidence 99877432 24556677776665554 2223334444431111 1122333322
Q ss_pred hC------CHHHHHHHHHHHHHh--CCCC---HHHHHHHH------------------Hh-----------hcHHHHHHH
Q 007407 375 IS------SEEEARILLHRAVEC--CPLD---VELWLALV------------------RL-----------ETYGVARSV 414 (605)
Q Consensus 375 le------~~e~A~~~l~rAl~~--~P~~---~~lw~aLa------------------~l-----------e~~e~A~~v 414 (605)
-. ..+++..+-....+. .+.+ .+.|-..+ +. ......+..
T Consensus 198 ~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~ 277 (577)
T KOG1258|consen 198 QNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWG 277 (577)
T ss_pred cCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHh
Confidence 11 112222211111100 0000 01111000 00 001112222
Q ss_pred HHHHHHhC-----CC---CHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHH
Q 007407 415 LNKARKKL-----PK---ERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVA 485 (605)
Q Consensus 415 L~~al~~~-----p~---~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~ 485 (605)
++..++.. |- ....|..+...+ ..|+.+.+..+|++++--+.. -.+.|+.++..++..|....+..
T Consensus 278 fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~-----Y~efWiky~~~m~~~~~~~~~~~ 352 (577)
T KOG1258|consen 278 FEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCAL-----YDEFWIKYARWMESSGDVSLANN 352 (577)
T ss_pred hhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhh-----hHHHHHHHHHHHHHcCchhHHHH
Confidence 22222221 11 245688888888 999999999999999876643 56899999999999999999999
Q ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHH---HHHHHH
Q 007407 486 IITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIA---LLRKAV 562 (605)
Q Consensus 486 i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~---~lekAl 562 (605)
.+..+..+... ..+.+.+..+.+....|++..|+.+|+.+....|+...+-...+.++...|+.+.+.. ++....
T Consensus 353 ~~~~~~~i~~k--~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~ 430 (577)
T KOG1258|consen 353 VLARACKIHVK--KTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIY 430 (577)
T ss_pred HHHhhhhhcCC--CCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhc
Confidence 88888887533 2677888889999999999999999999998889999999999999999999988873 333222
Q ss_pred HhC--C-CCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHCCCC
Q 007407 563 TYC--P-QAEVLWLMGAKEKWL-AGDVPATRDILQEAYAAIPNS 602 (605)
Q Consensus 563 ~~~--P-~~~~l~l~~a~~~~~-~gd~~~Ar~il~kAl~~~P~~ 602 (605)
.-- + -.+.++..++++.++ .++.+.|+.++.+|+...|.+
T Consensus 431 ~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~ 474 (577)
T KOG1258|consen 431 EGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDC 474 (577)
T ss_pred ccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCcc
Confidence 211 1 236788899998887 899999999999999999976
No 52
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.52 E-value=8.9e-12 Score=121.72 Aligned_cols=188 Identities=16% Similarity=0.122 Sum_probs=166.8
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh----hcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHH
Q 007407 373 VEISSEEEARILLHRAVECCPLDVELWLALVRL----ETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKI 447 (605)
Q Consensus 373 ~~le~~e~A~~~l~rAl~~~P~~~~lw~aLa~l----e~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i 447 (605)
...+++++|+..++++++..|.+..+|..++.+ ++++.|...++++++..|.+..+|..++.+. ..|++++|...
T Consensus 42 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 121 (234)
T TIGR02521 42 LEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQ 121 (234)
T ss_pred HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHH
Confidence 445688999999999999999999988877654 4789999999999999999999999999877 99999999999
Q ss_pred HHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007407 448 IERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPA 527 (605)
Q Consensus 448 ~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~a 527 (605)
+++++..... +.....|...+..+...|+++.|...+.+++..+|. +...|..++..+...|++++|...++++
T Consensus 122 ~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~ 195 (234)
T TIGR02521 122 FEQAIEDPLY---PQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ---RPESLLELAELYYLRGQYKDARAYLERY 195 (234)
T ss_pred HHHHHhcccc---ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC---ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999975321 224567888899999999999999999999999887 6778899999999999999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 007407 528 CTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCP 566 (605)
Q Consensus 528 l~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P 566 (605)
+...|.+...|..++.++...|+.+.|..+.+.+....|
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 196 QQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 999999999999999999999999999999888776654
No 53
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.52 E-value=4.7e-12 Score=131.14 Aligned_cols=207 Identities=12% Similarity=0.013 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHhCCC----cHHHHHHHH----HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh----hcHHHHHHHHHH
Q 007407 350 NKIRALRMALDEIPD----SVRLWKALV----EISSEEEARILLHRAVECCPLDVELWLALVRL----ETYGVARSVLNK 417 (605)
Q Consensus 350 ~a~~vl~kAle~~P~----~~~lw~~l~----~le~~e~A~~~l~rAl~~~P~~~~lw~aLa~l----e~~e~A~~vL~~ 417 (605)
.+..-+.++|...|- ....|...+ .+++.+.|+..|+++++..|++..+|..++.+ ++++.|...|++
T Consensus 44 ~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 123 (296)
T PRK11189 44 VILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDS 123 (296)
T ss_pred HHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 345556677764442 244565543 34577888888888888888888888877643 578888888888
Q ss_pred HHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 007407 418 ARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVD 496 (605)
Q Consensus 418 al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~ 496 (605)
+++..|++..+|..+|.+. ..|++++|...|+++++..|.+. .+..|.. .+...+++++|...+.+.+...+.
T Consensus 124 Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~---~~~~~~~---l~~~~~~~~~A~~~l~~~~~~~~~ 197 (296)
T PRK11189 124 VLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP---YRALWLY---LAESKLDPKQAKENLKQRYEKLDK 197 (296)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---HHHHHHH---HHHccCCHHHHHHHHHHHHhhCCc
Confidence 8888888888888888766 78888888888888888877642 2344543 234466788888888766544322
Q ss_pred chhhHHHHHHHHHHHHHcCCHHHH--HHHH----HHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 007407 497 EEDKKRTWVADVEECKKRGSIETA--RAIF----SPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQA 568 (605)
Q Consensus 497 ~~~~~~~~~~~a~~~~~~g~~~~A--~~i~----~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~ 568 (605)
..|. ++......|++..+ ...+ +...++.|....+|+.+|.++.+.|++++|+..|++|+..+|.+
T Consensus 198 -----~~~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 198 -----EQWG-WNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred -----cccH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 1121 22233334444332 2222 22235556677888888888888888888888888888888643
No 54
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.51 E-value=1.2e-11 Score=123.83 Aligned_cols=302 Identities=11% Similarity=0.014 Sum_probs=232.7
Q ss_pred CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcC----chhHHHHHHHHHhhCCCcHHHHHHHH
Q 007407 281 SPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLAR----PDEAKSVVAKGVRQIPKSANKIRALR 356 (605)
Q Consensus 281 ~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~----~~~Ak~~l~~al~~~P~s~~a~~vl~ 356 (605)
+|....-.+.++.-....|++..|..-|-.+++.+|++....+..+..+. ...|..-+.
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~----------------- 96 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLS----------------- 96 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHH-----------------
Confidence 44445556667777777899999999999999999999988887765542 233333444
Q ss_pred HHHHhCCCcHHHHH----HHHHhCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHh----------------hcHHHHHH
Q 007407 357 MALDEIPDSVRLWK----ALVEISSEEEARILLHRAVECCPLDV---ELWLALVRL----------------ETYGVARS 413 (605)
Q Consensus 357 kAle~~P~~~~lw~----~l~~le~~e~A~~~l~rAl~~~P~~~---~lw~aLa~l----------------e~~e~A~~ 413 (605)
+.|+.-|+-..... .+...+..+.|..-|..++...|.+. ++...|+.+ +++.+|+.
T Consensus 97 rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~ 176 (504)
T KOG0624|consen 97 RVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIE 176 (504)
T ss_pred HHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHH
Confidence 44455555433322 23445678899999999999999543 222222211 25678999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007407 414 VLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIE 492 (605)
Q Consensus 414 vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~ 492 (605)
.++..++..|++.+++..-++++ ..|.+.+|+.-+..+-+.-.+ +-+...+.+..+..-|+...+...++.+++
T Consensus 177 ~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-----nTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 177 MITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-----NTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred HHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-----chHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 99999999999999999999987 999999999988887665433 457788888899999999999999999999
Q ss_pred hCCCchhhHHH---------HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH----HHHHHHHHHHcCCHHHHHHHHH
Q 007407 493 IGVDEEDKKRT---------WVADVEECKKRGSIETARAIFSPACTVFLTKKNI----WLKAAQLEKSYGCRESLIALLR 559 (605)
Q Consensus 493 ~~p~~~~~~~~---------~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~----w~~la~l~~~~g~~e~A~~~le 559 (605)
++|+....... .+.-+...+..+.+.++.+.+++.++..|....+ ...+-.++...|++-+|+....
T Consensus 252 ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ 331 (504)
T KOG0624|consen 252 LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCK 331 (504)
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHH
Confidence 99984221111 2333566677889999999999999999985444 3344556667789999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCCC
Q 007407 560 KAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSEE 604 (605)
Q Consensus 560 kAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~~ 604 (605)
++|...|++..++...|..+....+++.|..-|++|.++||+|..
T Consensus 332 evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~ 376 (504)
T KOG0624|consen 332 EVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTR 376 (504)
T ss_pred HHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHH
Confidence 999999999999999999999999999999999999999998854
No 55
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.51 E-value=1.2e-11 Score=143.15 Aligned_cols=215 Identities=16% Similarity=0.116 Sum_probs=138.1
Q ss_pred HhCCHHHHHHHHHHHHHhC-CCCHHHHHHHH----HhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHH
Q 007407 374 EISSEEEARILLHRAVECC-PLDVELWLALV----RLETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKI 447 (605)
Q Consensus 374 ~le~~e~A~~~l~rAl~~~-P~~~~lw~aLa----~le~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i 447 (605)
+++..+.|..++..+++.. +.+..++.+|+ +.+..++|..+|+++.+ .+...|..++.-+ +.|+.++|.++
T Consensus 337 ~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~l 413 (697)
T PLN03081 337 RLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEM 413 (697)
T ss_pred hccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHH
Confidence 3334455555555555442 22333333222 23345666666665432 2334466666544 66777777777
Q ss_pred HHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007407 448 IERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPA 527 (605)
Q Consensus 448 ~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~a 527 (605)
|++.++. |+.++...+......|...|..++|..+++.......-.+ +...|...+..+.+.|++++|..++++.
T Consensus 414 f~~M~~~----g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p-~~~~y~~li~~l~r~G~~~eA~~~~~~~ 488 (697)
T PLN03081 414 FERMIAE----GVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKP-RAMHYACMIELLGREGLLDEAYAMIRRA 488 (697)
T ss_pred HHHHHHh----CCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC-CccchHhHHHHHHhcCCHHHHHHHHHHC
Confidence 7766543 3344556666666777777777777777777765321112 3455666777788888888888887654
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007407 528 CTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAA 598 (605)
Q Consensus 528 l~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~ 598 (605)
...| +..+|..+...+..+|+.+.|..++++.+...|++...|..++..+.+.|++++|.++++...+.
T Consensus 489 -~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 489 -PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred -CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 1223 45678888888888888888888888888888887777788888888888888888888876654
No 56
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.51 E-value=1.9e-11 Score=135.66 Aligned_cols=313 Identities=14% Similarity=0.088 Sum_probs=216.1
Q ss_pred ccchhhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcCc--h--h
Q 007407 258 ITTNSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLARP--D--E 333 (605)
Q Consensus 258 ~~~~~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~~--~--~ 333 (605)
+.-+.+.||+.++....--+-..+|++.+.|+.++.+.+..|++.+|+-.+.++++.+|.+.+...+.+.|+.. + .
T Consensus 180 ~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~ 259 (895)
T KOG2076|consen 180 GEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKR 259 (895)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHH
Confidence 33478999999999999999999999999999999999999999999999999999999999999998888753 2 3
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHhCCCcHHHHH---HHHHhCCHHHHHHHHHHHHHhCCC-----CHHHHHHH-HH
Q 007407 334 AKSVVAKGVRQIPKSANKIRALRMALDEIPDSVRLWK---ALVEISSEEEARILLHRAVECCPL-----DVELWLAL-VR 404 (605)
Q Consensus 334 Ak~~l~~al~~~P~s~~a~~vl~kAle~~P~~~~lw~---~l~~le~~e~A~~~l~rAl~~~P~-----~~~lw~aL-a~ 404 (605)
|...+.+++.++|..+- .+ .....|. .+....+-+.|.+.++.++..+-. ..++...| ..
T Consensus 260 Am~~f~~l~~~~p~~d~-----er------~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~ 328 (895)
T KOG2076|consen 260 AMETFLQLLQLDPPVDI-----ER------IEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLK 328 (895)
T ss_pred HHHHHHHHHhhCCchhH-----HH------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHH
Confidence 33444444444442200 00 0001111 112223347788888888873321 12233222 23
Q ss_pred hhcHHHHHHHHHHHHH----------------------hC--CC----CHHH-HHHHHHHH-HcCCHHHHHHHHHHHHHH
Q 007407 405 LETYGVARSVLNKARK----------------------KL--PK----ERAI-WIAAAKLE-ANGNTSMVGKIIERGIRA 454 (605)
Q Consensus 405 le~~e~A~~vL~~al~----------------------~~--p~----~~~i-wi~~a~Le-~~g~~~~a~~i~~~al~~ 454 (605)
...++.|...+...+. .+ |. +..+ .+.++-+. ..++..++ ++......
T Consensus 329 ~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~--ll~~l~~~ 406 (895)
T KOG2076|consen 329 NKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEA--LLHFLVED 406 (895)
T ss_pred hHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHH--HHHHHHHh
Confidence 3456666666555544 11 11 1222 22233222 23332222 22222221
Q ss_pred hccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 007407 455 LQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTK 534 (605)
Q Consensus 455 ~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~ 534 (605)
. ..+....+.++..|..+...|.+..|...+..++...+. .+..+|+..|.++...|.+++|...|.++|...|++
T Consensus 407 n--~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~--~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~ 482 (895)
T KOG2076|consen 407 N--VWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGY--QNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDN 482 (895)
T ss_pred c--CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccc--cchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCc
Confidence 1 002235678889999999999999999999999887654 367799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------CCHHHHHHHHHHHHHcCChHH
Q 007407 535 KNIWLKAAQLEKSYGCRESLIALLRKAVTYCP---------QAEVLWLMGAKEKWLAGDVPA 587 (605)
Q Consensus 535 ~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P---------~~~~l~l~~a~~~~~~gd~~~ 587 (605)
..+...|+.++.+.|+.++|.++++....-+| ....+...+...+.+.|+.++
T Consensus 483 ~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 483 LDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred hhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 99999999999999999999999998652221 123455666778888888876
No 57
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.50 E-value=5.6e-10 Score=132.51 Aligned_cols=330 Identities=12% Similarity=0.020 Sum_probs=247.9
Q ss_pred hhhhccHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhh----cCchhH
Q 007407 261 NSELRDILKARKIVRAVTKNSPKK--PLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRL----ARPDEA 334 (605)
Q Consensus 261 ~~~~gd~~kAr~ll~~al~~~P~~--~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L----~~~~~A 334 (605)
..+.|++..|+.+|+.+.+.+.-. .-.+-.....+...|.+..|..++..... | +...|-..+.. ...+.|
T Consensus 380 l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a~~k~g~~e~A 456 (1060)
T PLN03218 380 LLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--P-TLSTFNMLMSVCASSQDIDGA 456 (1060)
T ss_pred HHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--C-CHHHHHHHHHHHHhCcCHHHH
Confidence 356789999999999998876432 22333445667778889999988877654 4 34455444333 233567
Q ss_pred HHHHHHHHhhC--CCc----------------HHHHHHHHHHHHhCC-CcHHHHHHHH----HhCCHHHHHHHHHHHHHh
Q 007407 335 KSVVAKGVRQI--PKS----------------ANKIRALRMALDEIP-DSVRLWKALV----EISSEEEARILLHRAVEC 391 (605)
Q Consensus 335 k~~l~~al~~~--P~s----------------~~a~~vl~kAle~~P-~~~~lw~~l~----~le~~e~A~~~l~rAl~~ 391 (605)
..++.+..+.. |+. ..+.++|....+.-. -+...|-.++ +.++.++|..+|....+.
T Consensus 457 ~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~ 536 (1060)
T PLN03218 457 LRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK 536 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 77777766542 332 567778887776432 2456666554 456889999999998764
Q ss_pred --CCCCHHHHHHH----HHhhcHHHHHHHHHHHHHh---CCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCccc
Q 007407 392 --CPLDVELWLAL----VRLETYGVARSVLNKARKK---LPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVV 461 (605)
Q Consensus 392 --~P~~~~lw~aL----a~le~~e~A~~vL~~al~~---~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~ 461 (605)
.|+ ...|..| ++.+.++.|..++.++... ...+...|..+.... +.|++++|.++|+...+. ++.
T Consensus 537 Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~----gi~ 611 (1060)
T PLN03218 537 NVKPD-RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY----NIK 611 (1060)
T ss_pred CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc----CCC
Confidence 355 4455544 4456899999999999763 222345677777766 999999999999988764 344
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCHHHHHH
Q 007407 462 IDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVF-LTKKNIWLK 540 (605)
Q Consensus 462 ~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~-P~~~~~w~~ 540 (605)
.+...|......+.+.|.++.|..+|......+.. + +..+|...+..+.+.|++++|..+|..+.+.. +-+...|..
T Consensus 612 p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~-P-D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tyns 689 (1060)
T PLN03218 612 GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVK-P-DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSS 689 (1060)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 56788999999999999999999999999887644 3 46678888899999999999999999999864 446789999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--CCC
Q 007407 541 AAQLEKSYGCRESLIALLRKAVTY--CPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAA--IPN 601 (605)
Q Consensus 541 la~l~~~~g~~e~A~~~lekAl~~--~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~--~P~ 601 (605)
++..|.+.|++++|.++|++.... .| +...|..+...+.+.|++++|.++|.+.... .|+
T Consensus 690 LI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd 753 (1060)
T PLN03218 690 LMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN 753 (1060)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 999999999999999999998765 35 4677999999999999999999999987654 354
No 58
>PLN03077 Protein ECB2; Provisional
Probab=99.48 E-value=6.1e-11 Score=140.42 Aligned_cols=322 Identities=14% Similarity=0.093 Sum_probs=221.7
Q ss_pred chhhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--CCCCHHHHH---HHHhhcCchhH
Q 007407 260 TNSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNM--CPKNEDVWL---EACRLARPDEA 334 (605)
Q Consensus 260 ~~~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~--~P~~~~lwl---e~a~L~~~~~A 334 (605)
.+.+.|+++.|+.+|+++.. .+...|..+...+.+.|++++|..+|.++.+. .|+...+-. ..++....+.+
T Consensus 332 ~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a 408 (857)
T PLN03077 332 MYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVG 408 (857)
T ss_pred HHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHH
Confidence 35677888888888877642 34556877777888888888888888876543 354432211 11222233556
Q ss_pred HHHHHHHHhhCCCc------------------HHHHHHHHHHHHhCCCcHHHHHHHH----HhCCHHHHHHHHHHHHHhC
Q 007407 335 KSVVAKGVRQIPKS------------------ANKIRALRMALDEIPDSVRLWKALV----EISSEEEARILLHRAVECC 392 (605)
Q Consensus 335 k~~l~~al~~~P~s------------------~~a~~vl~kAle~~P~~~~lw~~l~----~le~~e~A~~~l~rAl~~~ 392 (605)
..++..+++..... ..|.++|.+..+ .++..|-.++ ..++.++|..+|++++...
T Consensus 409 ~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~ 485 (857)
T PLN03077 409 VKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTL 485 (857)
T ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 66666555543221 445555554322 2344555443 3346678888888776543
Q ss_pred -CCCHHHHH--------------------------------------HHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 007407 393 -PLDVELWL--------------------------------------ALVRLETYGVARSVLNKARKKLPKERAIWIAAA 433 (605)
Q Consensus 393 -P~~~~lw~--------------------------------------aLa~le~~e~A~~vL~~al~~~p~~~~iwi~~a 433 (605)
|+...+-. .+++.++.++|..+|+.. +.+...|..+.
T Consensus 486 ~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI 561 (857)
T PLN03077 486 KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILL 561 (857)
T ss_pred CCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHH
Confidence 33322111 122223456677777664 55667788888
Q ss_pred HHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHH
Q 007407 434 KLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECK 512 (605)
Q Consensus 434 ~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~ 512 (605)
... ..|+.++|..+|++..+. |+.++...+......|.+.|.+++|..+++.......-.| +...|.-.+..+.
T Consensus 562 ~~~~~~G~~~~A~~lf~~M~~~----g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P-~~~~y~~lv~~l~ 636 (857)
T PLN03077 562 TGYVAHGKGSMAVELFNRMVES----GVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP-NLKHYACVVDLLG 636 (857)
T ss_pred HHHHHcCCHHHHHHHHHHHHHc----CCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHH
Confidence 766 899999999999987753 3333444566666778889999999999999884322212 4677888889999
Q ss_pred HcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 007407 513 KRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDIL 592 (605)
Q Consensus 513 ~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il 592 (605)
+.|++++|..++++. ...|+ ..+|..+...+..+|+.+.+....+++++..|++...|..++.+|...|++++|.++.
T Consensus 637 r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr 714 (857)
T PLN03077 637 RAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVR 714 (857)
T ss_pred hCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHH
Confidence 999999999999875 23454 6889999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHH
Q 007407 593 QEAYAA 598 (605)
Q Consensus 593 ~kAl~~ 598 (605)
....+.
T Consensus 715 ~~M~~~ 720 (857)
T PLN03077 715 KTMREN 720 (857)
T ss_pred HHHHHc
Confidence 776543
No 59
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.48 E-value=9.3e-12 Score=142.39 Aligned_cols=239 Identities=14% Similarity=0.205 Sum_probs=197.4
Q ss_pred HHHHHHHHhCCCcHHHHHHHH----HhCCHHHHHHHHHHHHHhC-CC----CHHHHHHHHHhhc----HHHHHHHHHHHH
Q 007407 353 RALRMALDEIPDSVRLWKALV----EISSEEEARILLHRAVECC-PL----DVELWLALVRLET----YGVARSVLNKAR 419 (605)
Q Consensus 353 ~vl~kAle~~P~~~~lw~~l~----~le~~e~A~~~l~rAl~~~-P~----~~~lw~aLa~le~----~e~A~~vL~~al 419 (605)
.-+.+.+...|++.-+|..|. ++.+.+.||++.++||..+ +. -..+|.+|.+|+. -+..++++++|.
T Consensus 1445 eDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1445 EDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence 457788899999999999884 3447899999999999876 32 2358999999873 456788999999
Q ss_pred HhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch
Q 007407 420 KKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEE 498 (605)
Q Consensus 420 ~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~ 498 (605)
+.+. ...++..+..++ ..+.++.|.++|+..++.+.. ....|+.++..+.++..-+.|+.++.+||..-|. .
T Consensus 1525 qycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q-----~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk-~ 1597 (1710)
T KOG1070|consen 1525 QYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQ-----TRKVWIMYADFLLRQNEAEAARELLKRALKSLPK-Q 1597 (1710)
T ss_pred Hhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc-----hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch-h
Confidence 8753 356677777766 777899999999999998863 6789999999999998889999999999999887 2
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHH-HHHHH
Q 007407 499 DKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYC--PQAEV-LWLMG 575 (605)
Q Consensus 499 ~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~--P~~~~-l~l~~ 575 (605)
....+.-..|++....|+.+.+|.+|+-.+..+|....+|..|+..+.++|+.+.++.+|++++... |+... ++-+|
T Consensus 1598 eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkw 1677 (1710)
T KOG1070|consen 1598 EHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKW 1677 (1710)
T ss_pred hhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHH
Confidence 3667777889999999999999999999999999999999999999999999999999999999885 44433 33334
Q ss_pred HHHHHHcCChHHHHHHHHHHHHH
Q 007407 576 AKEKWLAGDVPATRDILQEAYAA 598 (605)
Q Consensus 576 a~~~~~~gd~~~Ar~il~kAl~~ 598 (605)
-..+-..||-..+..+=.+|.+.
T Consensus 1678 LeyEk~~Gde~~vE~VKarA~EY 1700 (1710)
T KOG1070|consen 1678 LEYEKSHGDEKNVEYVKARAKEY 1700 (1710)
T ss_pred HHHHHhcCchhhHHHHHHHHHHH
Confidence 33344578888888888888764
No 60
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.48 E-value=1.2e-11 Score=118.43 Aligned_cols=192 Identities=15% Similarity=0.072 Sum_probs=122.1
Q ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHH
Q 007407 407 TYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVA 485 (605)
Q Consensus 407 ~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~ 485 (605)
++..|+..|++|++..|++...|...|.++ +.|..+.|.+.|++|++..|++|. +.-.++-++-.+|.+++|..
T Consensus 50 d~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~Gd-----VLNNYG~FLC~qg~~~eA~q 124 (250)
T COG3063 50 DYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGD-----VLNNYGAFLCAQGRPEEAMQ 124 (250)
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccc-----hhhhhhHHHHhCCChHHHHH
Confidence 566666666666666666666666666655 666666777777777766666543 33344444445666777777
Q ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 007407 486 IITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYC 565 (605)
Q Consensus 486 i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~ 565 (605)
.|++++. +|.......+|.+.+-+..+.|+++.|+.+|+++|+++|+++.....++..++..|++-.|+..+++-....
T Consensus 125 ~F~~Al~-~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~ 203 (250)
T COG3063 125 QFERALA-DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRG 203 (250)
T ss_pred HHHHHHh-CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcc
Confidence 7777765 343333555666666667777777777777777777777777777777777777777777777777666555
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCCC
Q 007407 566 PQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSEE 604 (605)
Q Consensus 566 P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~~ 604 (605)
+-.....+...++.-..||.+.|-++=.+.-...|.+++
T Consensus 204 ~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 204 GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 433333333345555577777666666666666666653
No 61
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.48 E-value=2e-12 Score=128.71 Aligned_cols=225 Identities=14% Similarity=0.111 Sum_probs=191.0
Q ss_pred HHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH----HHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHH
Q 007407 370 KALVEISSEEEARILLHRAVECCPLDVELWLAL----VRLETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMV 444 (605)
Q Consensus 370 ~~l~~le~~e~A~~~l~rAl~~~P~~~~lw~aL----a~le~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a 444 (605)
+.+..|+.+.+|.+.|+.+++..|.- +-++.| .++..++.|..++...+..+|.+.......+++. ..++.+.+
T Consensus 231 kCylrLgm~r~AekqlqssL~q~~~~-dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a 309 (478)
T KOG1129|consen 231 KCYLRLGMPRRAEKQLQSSLTQFPHP-DTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDA 309 (478)
T ss_pred HHHHHhcChhhhHHHHHHHhhcCCch-hHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHH
Confidence 46678888899999999999988763 333333 4556789999999999999999999888888877 88899999
Q ss_pred HHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHH
Q 007407 445 GKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIF 524 (605)
Q Consensus 445 ~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~ 524 (605)
.++|+.+++..|.+ .+...-.|.-+--.++++-|...|++++..+.. +++.+.+.+..+.-.++++-+...|
T Consensus 310 ~~lYk~vlk~~~~n-----vEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~---speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 310 LQLYKLVLKLHPIN-----VEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ---SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHHHHHHHhcCCcc-----ceeeeeeeeccccCCChHHHHHHHHHHHHhcCC---ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 99999999987653 222222233344567899999999999999987 8889999999999999999999999
Q ss_pred HHHHHhc--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCC
Q 007407 525 SPACTVF--LT-KKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPN 601 (605)
Q Consensus 525 ~~al~~~--P~-~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~ 601 (605)
.+|+... |+ ...+|+.++.+....|++..|...|+-|+..+|+|...+..+|.+..+.|++++|+.+|..|-..+|+
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 9999764 44 57999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CC
Q 007407 602 SE 603 (605)
Q Consensus 602 ~~ 603 (605)
-.
T Consensus 462 m~ 463 (478)
T KOG1129|consen 462 MA 463 (478)
T ss_pred cc
Confidence 43
No 62
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=7.9e-11 Score=120.61 Aligned_cols=334 Identities=14% Similarity=0.011 Sum_probs=239.8
Q ss_pred chhhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcCc--------
Q 007407 260 TNSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLARP-------- 331 (605)
Q Consensus 260 ~~~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~~-------- 331 (605)
.+..+++-++|...+.....+- ..|..-+.+++++-..++-..+.--+...+..||--.++....+.+-..
T Consensus 106 cy~~~~n~~~Ai~~l~~~p~t~-r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e~~S~~ 184 (564)
T KOG1174|consen 106 CYRQIGNTDMAIETLLQVPPTL-RSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNEINSLV 184 (564)
T ss_pred HHHHHccchHHHHHHhcCCccc-cchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchhhhhhh
Confidence 4566777777777765553332 2355567778888777766666666666777888665555544443211
Q ss_pred -----------hhHHHHHHHHHhhCCCcH--HHHHHHHHHHHhCCCcHHHHHHHHHhC----CHHHHHHHHHHHHHhCCC
Q 007407 332 -----------DEAKSVVAKGVRQIPKSA--NKIRALRMALDEIPDSVRLWKALVEIS----SEEEARILLHRAVECCPL 394 (605)
Q Consensus 332 -----------~~Ak~~l~~al~~~P~s~--~a~~vl~kAle~~P~~~~lw~~l~~le----~~e~A~~~l~rAl~~~P~ 394 (605)
...+.++..|.-++.++. .+-..+-.-....|+++.|...+++++ ++++|+..|+++.-.+|.
T Consensus 185 m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy 264 (564)
T KOG1174|consen 185 MHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD 264 (564)
T ss_pred hhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh
Confidence 011222222222232221 122233334566788888877766543 778888889998888887
Q ss_pred CHHHHHHHHHh-------h-------------------------------cHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007407 395 DVELWLALVRL-------E-------------------------------TYGVARSVLNKARKKLPKERAIWIAAAKLE 436 (605)
Q Consensus 395 ~~~lw~aLa~l-------e-------------------------------~~e~A~~vL~~al~~~p~~~~iwi~~a~Le 436 (605)
++...-.++-| + +++.|...-++++...|.+++.++..|.+-
T Consensus 265 ~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL 344 (564)
T KOG1174|consen 265 NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLL 344 (564)
T ss_pred hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHH
Confidence 65432222111 0 245677788888888999999999988876
Q ss_pred -HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHH-HHH-HH
Q 007407 437 -ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADV-EEC-KK 513 (605)
Q Consensus 437 -~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a-~~~-~~ 513 (605)
+.|.+..|.-.|+.|...-|. +.+.+.-+...|...|.+.+|....+.++...|. +...+...+ ..+ ..
T Consensus 345 ~~~~R~~~A~IaFR~Aq~Lap~-----rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~---sA~~LtL~g~~V~~~d 416 (564)
T KOG1174|consen 345 IALERHTQAVIAFRTAQMLAPY-----RLEIYRGLFHSYLAQKRFKEANALANWTIRLFQN---SARSLTLFGTLVLFPD 416 (564)
T ss_pred HhccchHHHHHHHHHHHhcchh-----hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhc---chhhhhhhcceeeccC
Confidence 888999999899988876554 5677888888888899999999888888888776 444444332 211 12
Q ss_pred cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 007407 514 RGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQ 593 (605)
Q Consensus 514 ~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~ 593 (605)
-.--++|...|+++|++.|.+..+-..+|.++...|..+.++.++++++...|+ ..++..+|.+....+.+.+|.+.|.
T Consensus 417 p~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~ 495 (564)
T KOG1174|consen 417 PRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYY 495 (564)
T ss_pred chhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 223488999999999999999999999999999999999999999999999985 6889999999999999999999999
Q ss_pred HHHHHCCCCC
Q 007407 594 EAYAAIPNSE 603 (605)
Q Consensus 594 kAl~~~P~~~ 603 (605)
.|+.++|+|.
T Consensus 496 ~ALr~dP~~~ 505 (564)
T KOG1174|consen 496 KALRQDPKSK 505 (564)
T ss_pred HHHhcCccch
Confidence 9999999985
No 63
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.48 E-value=4.5e-12 Score=144.90 Aligned_cols=207 Identities=21% Similarity=0.294 Sum_probs=188.1
Q ss_pred HHHHHHHhCCCCHHHHHHHHH----hhcHHHHHHHHHHHHHhC-CC----CHHHHHHHHHHH-HcCCHHHHHHHHHHHHH
Q 007407 384 LLHRAVECCPLDVELWLALVR----LETYGVARSVLNKARKKL-PK----ERAIWIAAAKLE-ANGNTSMVGKIIERGIR 453 (605)
Q Consensus 384 ~l~rAl~~~P~~~~lw~aLa~----le~~e~A~~vL~~al~~~-p~----~~~iwi~~a~Le-~~g~~~~a~~i~~~al~ 453 (605)
-+++.|...|++.-+|+.|.. +.+.+.|+++.++|+..+ +. .-.+|+++..|| ..|.-+.+.++|++|.+
T Consensus 1446 DferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1446 DFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 477888899999999998753 357899999999999886 22 346899999999 99999999999999998
Q ss_pred HhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 007407 454 ALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLT 533 (605)
Q Consensus 454 ~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~ 533 (605)
.+. ...+++.++.+|++.+.++.|.++++..++-.-. ...+|+.++.++.++++-+.|+.++.+||+.-|.
T Consensus 1526 ycd------~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q---~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1526 YCD------AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQ---TRKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred hcc------hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc---hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence 763 4678999999999999999999999999997655 7889999999999999999999999999999998
Q ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHC
Q 007407 534 --KKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAI 599 (605)
Q Consensus 534 --~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~ 599 (605)
+..+.-..|++++++|+.+.++.+|+-.+..+|+-.++|.-|.....++|+.+-+|.+|+|++.+.
T Consensus 1597 ~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1597 QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 788899999999999999999999999999999999999999999999999999999999999764
No 64
>PLN02789 farnesyltranstransferase
Probab=99.47 E-value=1.8e-11 Score=127.33 Aligned_cols=217 Identities=12% Similarity=0.066 Sum_probs=173.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHH----Hhh-cHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCC--HHHHHHH
Q 007407 376 SSEEEARILLHRAVECCPLDVELWLALV----RLE-TYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGN--TSMVGKI 447 (605)
Q Consensus 376 e~~e~A~~~l~rAl~~~P~~~~lw~aLa----~le-~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~--~~~a~~i 447 (605)
+..+.|+.++.++++.+|.+..+|.... .++ .++++...++++++.+|++..+|...+.+. ..|. ......+
T Consensus 51 e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~ 130 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEF 130 (320)
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHH
Confidence 4567888888888888998888887432 344 468899999999999999999999877544 5665 3567888
Q ss_pred HHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHc---CCH----HHH
Q 007407 448 IERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKR---GSI----ETA 520 (605)
Q Consensus 448 ~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~---g~~----~~A 520 (605)
++++++..|+ +...|...+-.+...|.++++.+.+.++|..+|. +..+|...+..+... |.+ +.+
T Consensus 131 ~~kal~~dpk-----Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~---N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 131 TRKILSLDAK-----NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR---NNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHhCcc-----cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC---chhHHHHHHHHHHhccccccccccHHHH
Confidence 8899988776 5788998888888889999999999999999988 889999888776554 222 467
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-------------
Q 007407 521 RAIFSPACTVFLTKKNIWLKAAQLEKSY----GCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAG------------- 583 (605)
Q Consensus 521 ~~i~~~al~~~P~~~~~w~~la~l~~~~----g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~g------------- 583 (605)
.....+++..+|++.++|..++.++... ++..+|...+.+++..+|+++.+.-.++.++....
T Consensus 203 l~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~ 282 (320)
T PLN02789 203 LKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTL 282 (320)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhcc
Confidence 8888899999999999999999999884 44567999999999999999888888888876522
Q ss_pred -----ChHHHHHHHHHHHHHCC
Q 007407 584 -----DVPATRDILQEAYAAIP 600 (605)
Q Consensus 584 -----d~~~Ar~il~kAl~~~P 600 (605)
..++|..++...-+.+|
T Consensus 283 ~~~~~~~~~a~~~~~~l~~~d~ 304 (320)
T PLN02789 283 AEELSDSTLAQAVCSELEVADP 304 (320)
T ss_pred ccccccHHHHHHHHHHHHhhCc
Confidence 23668877777655555
No 65
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.47 E-value=6.8e-11 Score=127.65 Aligned_cols=225 Identities=18% Similarity=0.132 Sum_probs=172.9
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCCH-HHHHHHHH----hhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHH
Q 007407 373 VEISSEEEARILLHRAVECCPLDV-ELWLALVR----LETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGK 446 (605)
Q Consensus 373 ~~le~~e~A~~~l~rAl~~~P~~~-~lw~aLa~----le~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~ 446 (605)
...++++.|..+|.++.+..|++. ...+..++ .++++.|...++++++..|.++.+...++.++ ..|+.+.+..
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~ 208 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLD 208 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHH
Confidence 344689999999999999999985 33222233 35899999999999999999999999999888 8999999999
Q ss_pred HHHHHHHHhccCcccc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHH
Q 007407 447 IIERGIRALQGEEVVI---DRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAI 523 (605)
Q Consensus 447 i~~~al~~~p~~~~~~---~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i 523 (605)
++.+..+....+.... ....|.............+...+.++..-...|+ ++.++..++..+...|+.++|..+
T Consensus 209 ~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~---~~~~~~~~A~~l~~~g~~~~A~~~ 285 (398)
T PRK10747 209 ILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRH---QVALQVAMAEHLIECDDHDTAQQI 285 (398)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhC---CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999887654321100 0122332222222222233334444443333333 788899999999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCC
Q 007407 524 FSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSE 603 (605)
Q Consensus 524 ~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~ 603 (605)
++++++. |.+..+...++.+ ..++.+++++.+++.++.+|+++.+++.+|+++...+++++|++.|+++++..|+++
T Consensus 286 L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~ 362 (398)
T PRK10747 286 ILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY 362 (398)
T ss_pred HHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH
Confidence 9999995 5566666666555 448999999999999999999999999999999999999999999999999999875
No 66
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=2.8e-11 Score=128.42 Aligned_cols=276 Identities=12% Similarity=0.006 Sum_probs=210.9
Q ss_pred CChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHH-hhcCchhHHHHHHHHHhhCCCcHHHHHHHHHHHHh
Q 007407 283 KKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEAC-RLARPDEAKSVVAKGVRQIPKSANKIRALRMALDE 361 (605)
Q Consensus 283 ~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a-~L~~~~~Ak~~l~~al~~~P~s~~a~~vl~kAle~ 361 (605)
++++.....|.-+...+++....++.+..++..|-+.+.+...+ -+........+| -+=.+.+..
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf--------------~lsh~LV~~ 307 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLF--------------LLSHKLVDL 307 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHH--------------HHHHHHHHh
Confidence 34555666677777788888888888888888887766654332 222221122222 122356778
Q ss_pred CCCcHHHHHHHHHh----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHh----hcHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 007407 362 IPDSVRLWKALVEI----SSEEEARILLHRAVECCPLDVELWLALVRL----ETYGVARSVLNKARKKLPKERAIWIAAA 433 (605)
Q Consensus 362 ~P~~~~lw~~l~~l----e~~e~A~~~l~rAl~~~P~~~~lw~aLa~l----e~~e~A~~vL~~al~~~p~~~~iwi~~a 433 (605)
.|++.--|..++-+ .++.+|+++|.+++..+|.....|++++.. ++.+.|...|..|-+.+|..+.-.+.++
T Consensus 308 yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlg 387 (611)
T KOG1173|consen 308 YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLG 387 (611)
T ss_pred CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHH
Confidence 89988889876533 478999999999999999999999998764 3688999999999999998776666666
Q ss_pred HHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCchhhHHHHHHHH
Q 007407 434 KLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEI----GVDEEDKKRTWVADV 508 (605)
Q Consensus 434 ~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~----~p~~~~~~~~~~~~a 508 (605)
.=. +.++..-|.+.|..|+...|... -+.-..+...-..+.+.+|..+++.++.. .++.+.=..+|..++
T Consensus 388 mey~~t~n~kLAe~Ff~~A~ai~P~Dp-----lv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLG 462 (611)
T KOG1173|consen 388 MEYMRTNNLKLAEKFFKQALAIAPSDP-----LVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLG 462 (611)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCCcc-----hhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHH
Confidence 333 78899999999999999988742 23344454555556688899888888843 222111234578899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 007407 509 EECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAK 577 (605)
Q Consensus 509 ~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~ 577 (605)
..+.+.+.+++|+..|+++|...|.+.+++-..|.++...|+++.|...|.+||.+.|++...--+++.
T Consensus 463 H~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 463 HAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKL 531 (611)
T ss_pred HHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998665555444
No 67
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.45 E-value=5.9e-12 Score=134.04 Aligned_cols=233 Identities=16% Similarity=0.150 Sum_probs=188.4
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHH----HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhh----cHHHHHHHHHHHHH
Q 007407 349 ANKIRALRMALDEIPDSVRLWKALV----EISSEEEARILLHRAVECCPLDVELWLALVRLE----TYGVARSVLNKARK 420 (605)
Q Consensus 349 ~~a~~vl~kAle~~P~~~~lw~~l~----~le~~e~A~~~l~rAl~~~P~~~~lw~aLa~le----~~e~A~~vL~~al~ 420 (605)
.+|.-.|+.|+...|.+.+.|..|. +.++...|+..|.++++..|+|.++.++||--+ .-..|.+.|.+-+.
T Consensus 302 ~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~ 381 (579)
T KOG1125|consen 302 SEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIR 381 (579)
T ss_pred hHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 3455678899999999999999884 334668899999999999999999999998654 23468999999888
Q ss_pred hCCCCHHHHHHHHHHH-HcC---------CHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007407 421 KLPKERAIWIAAAKLE-ANG---------NTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNT 490 (605)
Q Consensus 421 ~~p~~~~iwi~~a~Le-~~g---------~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~a 490 (605)
..|.. +|+..+.-. ..+ .+..+..+|-.+....|. ..+.++..-++..+...|.+++|+..|+.+
T Consensus 382 ~~p~y--~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~---~~DpdvQ~~LGVLy~ls~efdraiDcf~~A 456 (579)
T KOG1125|consen 382 NKPKY--VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPT---KIDPDVQSGLGVLYNLSGEFDRAVDCFEAA 456 (579)
T ss_pred hCccc--hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCC---CCChhHHhhhHHHHhcchHHHHHHHHHHHH
Confidence 77653 233322111 111 144566667777666654 357888899999999999999999999999
Q ss_pred HHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---
Q 007407 491 IEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQ--- 567 (605)
Q Consensus 491 l~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~--- 567 (605)
|...|+ +..+|..++..+.+..+.++|+..|.+||++.|++.-+|+.+|..|+..|.|++|.+.|-.||...++
T Consensus 457 L~v~Pn---d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~ 533 (579)
T KOG1125|consen 457 LQVKPN---DYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRN 533 (579)
T ss_pred HhcCCc---hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccc
Confidence 999999 89999999999999999999999999999999999999999999999999999999999999998654
Q ss_pred -------CHHHHHHHHHHHHHcCChHHHH
Q 007407 568 -------AEVLWLMGAKEKWLAGDVPATR 589 (605)
Q Consensus 568 -------~~~l~l~~a~~~~~~gd~~~Ar 589 (605)
+..+|-++=.++...++.+-+.
T Consensus 534 ~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 534 HNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred cccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 2468888766666667666443
No 68
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.45 E-value=1.4e-10 Score=134.21 Aligned_cols=327 Identities=13% Similarity=0.122 Sum_probs=242.9
Q ss_pred cchhhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCC-CHHHHHHHHhh----cCchh
Q 007407 259 TTNSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPK-NEDVWLEACRL----ARPDE 333 (605)
Q Consensus 259 ~~~~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~-~~~lwle~a~L----~~~~~ 333 (605)
..+.+.|+++.|+.+|..+.+ | +...|..+...+...|++++|..+|.++.+..+. +...+...++. .....
T Consensus 166 ~~y~k~g~~~~A~~lf~~m~~--~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 166 LMHVKCGMLIDARRLFDEMPE--R-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHhcCCCHHHHHHHHhcCCC--C-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 346788999999999988853 3 4556888888888899999999999998765432 22233322222 22234
Q ss_pred HHHHHHHHHhhC--CCc----------------HHHHHHHHHHHHhCCCcHHHHHHHHH----hCCHHHHHHHHHHHHHh
Q 007407 334 AKSVVAKGVRQI--PKS----------------ANKIRALRMALDEIPDSVRLWKALVE----ISSEEEARILLHRAVEC 391 (605)
Q Consensus 334 Ak~~l~~al~~~--P~s----------------~~a~~vl~kAle~~P~~~~lw~~l~~----le~~e~A~~~l~rAl~~ 391 (605)
++.+...+++.. |+. ..|.++|.+. .+.++..|-.++. .++.++|..+|.+..+.
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~ 319 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS 319 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 444444333321 211 5566666543 3446667776644 45889999999998764
Q ss_pred --CCCCHHH---HHHHHHhhcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccH
Q 007407 392 --CPLDVEL---WLALVRLETYGVARSVLNKARKKL-PKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDR 464 (605)
Q Consensus 392 --~P~~~~l---w~aLa~le~~e~A~~vL~~al~~~-p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~ 464 (605)
.|+...+ ..++++++.++.|..++..+++.. +.+..++..+...+ +.|+.+.|.++|++..+ .+.
T Consensus 320 g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--------~d~ 391 (697)
T PLN03081 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR--------KNL 391 (697)
T ss_pred CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--------CCe
Confidence 4554322 224556778999999999998875 55667778888877 99999999999988643 134
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--CHHHHHHHH
Q 007407 465 DTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLT--KKNIWLKAA 542 (605)
Q Consensus 465 ~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~--~~~~w~~la 542 (605)
..|-..+..+-+.|..++|..++++.+..+.. | +..++......+...|.+++|..+|+...+..+- +...|..++
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~-P-d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li 469 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVA-P-NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI 469 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-C-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHH
Confidence 57988999999999999999999999887654 3 4667888888899999999999999999875433 335688889
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCC
Q 007407 543 QLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSE 603 (605)
Q Consensus 543 ~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~ 603 (605)
.++.+.|++++|.+++++.- ..| +...|..+...+...|+++.|+.++++.++..|++.
T Consensus 470 ~~l~r~G~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~ 528 (697)
T PLN03081 470 ELLGREGLLDEAYAMIRRAP-FKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKL 528 (697)
T ss_pred HHHHhcCCHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCC
Confidence 99999999999999998642 234 467799999999899999999999999999999864
No 69
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.43 E-value=9.6e-11 Score=121.36 Aligned_cols=229 Identities=12% Similarity=0.057 Sum_probs=139.9
Q ss_pred ccHHHHHHHHHHHHHhCC----CChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcCchhHHHHHHH
Q 007407 265 RDILKARKIVRAVTKNSP----KKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLARPDEAKSVVAK 340 (605)
Q Consensus 265 gd~~kAr~ll~~al~~~P----~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~~~~Ak~~l~~ 340 (605)
+..+.+...+.+++...| ..+..|+..+.++...|+...|+..+.++++.+|++..+|...+.+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~----------- 108 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYL----------- 108 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-----------
Confidence 445667777777886444 33667999999999999999999999999999999988887665442
Q ss_pred HHhhCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh----hcHHHHHHHHH
Q 007407 341 GVRQIPKSANKIRALRMALDEIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALVRL----ETYGVARSVLN 416 (605)
Q Consensus 341 al~~~P~s~~a~~vl~kAle~~P~~~~lw~~l~~le~~e~A~~~l~rAl~~~P~~~~lw~aLa~l----e~~e~A~~vL~ 416 (605)
...+++++|+..|+++++..|++..+|..++.+ +++++|...++
T Consensus 109 --------------------------------~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~ 156 (296)
T PRK11189 109 --------------------------------TQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLL 156 (296)
T ss_pred --------------------------------HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 222345555555566666566555555544322 35566666666
Q ss_pred HHHHhCCCCHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH---
Q 007407 417 KARKKLPKERA--IWIAAAKLEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTI--- 491 (605)
Q Consensus 417 ~al~~~p~~~~--iwi~~a~Le~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al--- 491 (605)
++++..|+++. +|..+ .+..++.++|...|.+++...+. ..|. .+......|....+ ..+..++
T Consensus 157 ~al~~~P~~~~~~~~~~l--~~~~~~~~~A~~~l~~~~~~~~~-------~~~~-~~~~~~~lg~~~~~-~~~~~~~~~~ 225 (296)
T PRK11189 157 AFYQDDPNDPYRALWLYL--AESKLDPKQAKENLKQRYEKLDK-------EQWG-WNIVEFYLGKISEE-TLMERLKAGA 225 (296)
T ss_pred HHHHhCCCCHHHHHHHHH--HHccCCHHHHHHHHHHHHhhCCc-------cccH-HHHHHHHccCCCHH-HHHHHHHhcC
Confidence 66666665542 12211 12344556666666554433211 1122 12222223332222 1222222
Q ss_pred ----HhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHcCC
Q 007407 492 ----EIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFL-TKKNIWLKAAQLEKSYGC 550 (605)
Q Consensus 492 ----~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P-~~~~~w~~la~l~~~~g~ 550 (605)
...|. ...+|+.++..+...|++++|+..|++|++.+| ++...-+.+..++...+.
T Consensus 226 ~~~~~l~~~---~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 226 TDNTELAER---LCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALLGQD 286 (296)
T ss_pred CCcHHHHHH---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhh
Confidence 22232 567888899999999999999999999999886 666666666666665443
No 70
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.43 E-value=7.1e-11 Score=129.25 Aligned_cols=285 Identities=16% Similarity=0.121 Sum_probs=204.8
Q ss_pred hhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCC-CCHHHHHHHHhhcCc----hhHHH
Q 007407 262 SELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCP-KNEDVWLEACRLARP----DEAKS 336 (605)
Q Consensus 262 ~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P-~~~~lwle~a~L~~~----~~Ak~ 336 (605)
.+..-.+++.+.|+++++.+|+|+.+.+.+|--+...++++.|...+.++++.++ .+...|..++.+-.- ..|..
T Consensus 455 eR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~ 534 (799)
T KOG4162|consen 455 ERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALD 534 (799)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHH
Confidence 4555678899999999999999999999999999999999999999999999954 567789888876432 23444
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHhC----CHHHHHHHHHHHHHhCCCCHHHHHHHHH-----h--
Q 007407 337 VVAKGVRQIPKSANKIRALRMALDEIPDSVRLWKALVEIS----SEEEARILLHRAVECCPLDVELWLALVR-----L-- 405 (605)
Q Consensus 337 ~l~~al~~~P~s~~a~~vl~kAle~~P~~~~lw~~l~~le----~~e~A~~~l~rAl~~~P~~~~lw~aLa~-----l-- 405 (605)
+...+++..|+|..+...-++++ +.++|.......+...-....+-..+.+ +
T Consensus 535 -----------------vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~ 597 (799)
T KOG4162|consen 535 -----------------VVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKA 597 (799)
T ss_pred -----------------HHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhc
Confidence 44445555555544443333332 4455554444443322111111111110 0
Q ss_pred ------hcHHHHHHHHHHHHH-------h------CC------C-------CHHHHHHHHHHH-HcCCHHHHHHHHHHHH
Q 007407 406 ------ETYGVARSVLNKARK-------K------LP------K-------ERAIWIAAAKLE-ANGNTSMVGKIIERGI 452 (605)
Q Consensus 406 ------e~~e~A~~vL~~al~-------~------~p------~-------~~~iwi~~a~Le-~~g~~~~a~~i~~~al 452 (605)
++..+|.+...++.. . .| . ...+|..++.+. ..++.+.+...+.++-
T Consensus 598 ~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~ 677 (799)
T KOG4162|consen 598 GLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS 677 (799)
T ss_pred ccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 001111111111000 0 12 1 246788888877 8888899998898887
Q ss_pred HHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHh
Q 007407 453 RALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARA--IFSPACTV 530 (605)
Q Consensus 453 ~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~--i~~~al~~ 530 (605)
+..|. ....|...+..++..|...+|...|..++.++|+ ........|.++...|+..-|.. ++..++++
T Consensus 678 ~~~~l-----~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~---hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~ 749 (799)
T KOG4162|consen 678 KIDPL-----SASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD---HVPSMTALAELLLELGSPRLAEKRSLLSDALRL 749 (799)
T ss_pred hcchh-----hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC---CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh
Confidence 77654 5678999999999999999999999999999998 77888889999999886555544 99999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 007407 531 FLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVL 571 (605)
Q Consensus 531 ~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l 571 (605)
+|.+..+|+.+|.+.++.|+.+.|-+.|+-|++..+.+|..
T Consensus 750 dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~ 790 (799)
T KOG4162|consen 750 DPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPVL 790 (799)
T ss_pred CCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCcc
Confidence 99999999999999999999999999999999998766543
No 71
>PLN02789 farnesyltranstransferase
Probab=99.41 E-value=3e-11 Score=125.72 Aligned_cols=206 Identities=12% Similarity=0.061 Sum_probs=172.9
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcC-CHHHHHHHHHHHHHH
Q 007407 377 SEEEARILLHRAVECCPLDVELWLALVRLETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANG-NTSMVGKIIERGIRA 454 (605)
Q Consensus 377 ~~e~A~~~l~rAl~~~P~~~~lw~aLa~le~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g-~~~~a~~i~~~al~~ 454 (605)
++.+|..+|..++. ..+.+++|...+.++++.+|.+..+|...+.+. ..| ++.++...++++++.
T Consensus 35 ~~~~a~~~~ra~l~-------------~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~ 101 (320)
T PLN02789 35 EFREAMDYFRAVYA-------------SDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED 101 (320)
T ss_pred HHHHHHHHHHHHHH-------------cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH
Confidence 34555555555544 335678999999999999999999999998754 666 578999999999999
Q ss_pred hccCcccccHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 007407 455 LQGEEVVIDRDTWMKEAEVADRAGSV--VTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFL 532 (605)
Q Consensus 455 ~p~~~~~~~~~~wl~~A~~~e~~g~~--~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P 532 (605)
.|+ +..+|...+..+.+.|.. ..+...+.+++..+|. +..+|...+-++...|.+++++..+.++++.+|
T Consensus 102 npk-----nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk---Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~ 173 (320)
T PLN02789 102 NPK-----NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK---NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV 173 (320)
T ss_pred CCc-----chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC
Confidence 887 567898888777777753 6778899999999998 999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHc---CC----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHCCC
Q 007407 533 TKKNIWLKAAQLEKSY---GC----RESLIALLRKAVTYCPQAEVLWLMGAKEKWL----AGDVPATRDILQEAYAAIPN 601 (605)
Q Consensus 533 ~~~~~w~~la~l~~~~---g~----~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~----~gd~~~Ar~il~kAl~~~P~ 601 (605)
.+.++|...+.+.... |. .++.+.+..+++..+|++..+|..++.++.. .+...+|...+.+++..+|+
T Consensus 174 ~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~ 253 (320)
T PLN02789 174 RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN 253 (320)
T ss_pred CchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC
Confidence 9999999999888765 22 2578899999999999999999999998876 34567799999999988887
Q ss_pred CC
Q 007407 602 SE 603 (605)
Q Consensus 602 ~~ 603 (605)
+.
T Consensus 254 s~ 255 (320)
T PLN02789 254 HV 255 (320)
T ss_pred cH
Confidence 64
No 72
>PLN03077 Protein ECB2; Provisional
Probab=99.40 E-value=8.2e-10 Score=130.88 Aligned_cols=302 Identities=16% Similarity=0.124 Sum_probs=194.6
Q ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhc----CchhHHHHHHHHHhh--CCCc---------
Q 007407 284 KPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLA----RPDEAKSVVAKGVRQ--IPKS--------- 348 (605)
Q Consensus 284 ~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~----~~~~Ak~~l~~al~~--~P~s--------- 348 (605)
+...|..+...+.+.|+++.|+.+|++... .+...|...+..+ ..+.|..+|.+..+. .|+.
T Consensus 322 d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a 398 (857)
T PLN03077 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSA 398 (857)
T ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHH
Confidence 344555666666666777777777766532 2334454444332 224566666554332 2443
Q ss_pred -------HHHHHHHHHHHHhCC-CcHHHHHHHH----HhCCHHHHHHHHHHHHHhCCCCHHHHHHHH----HhhcHHHHH
Q 007407 349 -------ANKIRALRMALDEIP-DSVRLWKALV----EISSEEEARILLHRAVECCPLDVELWLALV----RLETYGVAR 412 (605)
Q Consensus 349 -------~~a~~vl~kAle~~P-~~~~lw~~l~----~le~~e~A~~~l~rAl~~~P~~~~lw~aLa----~le~~e~A~ 412 (605)
..+.+++..++..-. .+...|-.++ +.++.++|+.+|++..+ .+...|..++ +.+.+++|.
T Consensus 399 ~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~ 475 (857)
T PLN03077 399 CACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEAL 475 (857)
T ss_pred HhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHH
Confidence 344555555554322 2233444433 33466777777776543 2333454443 334667777
Q ss_pred HHHHHHHHhCCCCHHHHHHH-----------------------------------HHHH-HcCCHHHHHHHHHHHHHHhc
Q 007407 413 SVLNKARKKLPKERAIWIAA-----------------------------------AKLE-ANGNTSMVGKIIERGIRALQ 456 (605)
Q Consensus 413 ~vL~~al~~~p~~~~iwi~~-----------------------------------a~Le-~~g~~~~a~~i~~~al~~~p 456 (605)
.+|++++...+.+...+..+ ..++ +.|+.++|..+|+..
T Consensus 476 ~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----- 550 (857)
T PLN03077 476 IFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----- 550 (857)
T ss_pred HHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----
Confidence 77777765543332222221 1233 445555555555443
Q ss_pred cCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--C
Q 007407 457 GEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLT--K 534 (605)
Q Consensus 457 ~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~--~ 534 (605)
..+...|-.....+-+.|..++|..+|++....+.. | +..++......+...|.+++|..+|+...+.++- +
T Consensus 551 ----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~-P-d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~ 624 (857)
T PLN03077 551 ----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVN-P-DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN 624 (857)
T ss_pred ----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-C-CcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc
Confidence 124567888888899999999999999998886543 3 3445666667788999999999999999855432 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCCC
Q 007407 535 KNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSEE 604 (605)
Q Consensus 535 ~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~~ 604 (605)
...|..++.++.+.|++++|.+++++. ...|+ ..+|..+...+..+|+.+.|+.+.++.+++.|++..
T Consensus 625 ~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~ 692 (857)
T PLN03077 625 LKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVG 692 (857)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcc
Confidence 467888999999999999999999975 34454 778888888887899999999999999999998753
No 73
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.39 E-value=1.6e-10 Score=110.83 Aligned_cols=196 Identities=15% Similarity=0.077 Sum_probs=170.2
Q ss_pred HHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhh----cHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHH
Q 007407 370 KALVEISSEEEARILLHRAVECCPLDVELWLALVRLE----TYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMV 444 (605)
Q Consensus 370 ~~l~~le~~e~A~~~l~rAl~~~P~~~~lw~aLa~le----~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a 444 (605)
..+.+-+++..|++.+++||+.+|++...|+.+|-++ +.+.|.+.|++|++..|.+-+++.+++-+- .+|.++++
T Consensus 43 l~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA 122 (250)
T COG3063 43 LGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEA 122 (250)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHH
Confidence 3445556899999999999999999999999988664 678899999999999999999999999755 99999999
Q ss_pred HHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHH
Q 007407 445 GKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIF 524 (605)
Q Consensus 445 ~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~ 524 (605)
...|++|+.. |.- ......|...+....+.|.++.|..+|++++..+|+ +.......+......|++..|+..+
T Consensus 123 ~q~F~~Al~~-P~Y--~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~---~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 123 MQQFERALAD-PAY--GEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ---FPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred HHHHHHHHhC-CCC--CCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC---CChHHHHHHHHHHhcccchHHHHHH
Confidence 9999999874 332 235678888888889999999999999999999998 7888889999999999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 007407 525 SPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVL 571 (605)
Q Consensus 525 ~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l 571 (605)
+.....-+-....+...+.+....|+.+.+-++=.+....+|.++..
T Consensus 197 ~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 197 ERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred HHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 99987776666666666799999999999888888888889988665
No 74
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=4.5e-10 Score=118.97 Aligned_cols=322 Identities=13% Similarity=0.057 Sum_probs=201.3
Q ss_pred hhhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHh----hcCchhHHH
Q 007407 261 NSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACR----LARPDEAKS 336 (605)
Q Consensus 261 ~~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~----L~~~~~Ak~ 336 (605)
-...||++.|..+|..++.++|.|.-.+-...-.+...|+++.|.+--.+.++.||...+.|...+- |...+.|..
T Consensus 12 a~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ 91 (539)
T KOG0548|consen 12 AFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAIL 91 (539)
T ss_pred hcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHH
Confidence 3678999999999999999999988888777777889999999999999999999999999987653 233478999
Q ss_pred HHHHHHhhCCCcHH-------HHHHHHHHHHhCCCcHHHHHHHHHhC-----CHHHHHHHHHHHHHhCCCCHHHHHH---
Q 007407 337 VVAKGVRQIPKSAN-------KIRALRMALDEIPDSVRLWKALVEIS-----SEEEARILLHRAVECCPLDVELWLA--- 401 (605)
Q Consensus 337 ~l~~al~~~P~s~~-------a~~vl~kAle~~P~~~~lw~~l~~le-----~~e~A~~~l~rAl~~~P~~~~lw~a--- 401 (605)
.|.++|++.|.+.. +....+++ ...-+++.+|..+.... -.+.+...+...+...|.++.+++.
T Consensus 92 ay~~GL~~d~~n~~L~~gl~~a~~~~~~~-~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r 170 (539)
T KOG0548|consen 92 AYSEGLEKDPSNKQLKTGLAQAYLEDYAA-DQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPR 170 (539)
T ss_pred HHHHHhhcCCchHHHHHhHHHhhhHHHHh-hhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHH
Confidence 99999999999922 22111112 11223456666665543 1244444444555555555443321
Q ss_pred ----HHHhh-----------------------------------------------------------cHHHHHHHHHHH
Q 007407 402 ----LVRLE-----------------------------------------------------------TYGVARSVLNKA 418 (605)
Q Consensus 402 ----La~le-----------------------------------------------------------~~e~A~~vL~~a 418 (605)
++.+- .+..|...|..+
T Consensus 171 ~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a 250 (539)
T KOG0548|consen 171 LMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKA 250 (539)
T ss_pred HHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 11110 012233444444
Q ss_pred HHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHH----------HHHHHHHcCCHHHHHHHH
Q 007407 419 RKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMK----------EAEVADRAGSVVTCVAII 487 (605)
Q Consensus 419 l~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~----------~A~~~e~~g~~~~A~~i~ 487 (605)
+... ++...+.+.+-.+ ..|.+..++.....+++... +.|.. .+..+.+.++.+.|+..|
T Consensus 251 ~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr--------e~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 251 LELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR--------ELRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH--------HHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 4443 3333333333333 34444444444444433321 11110 111222233344444444
Q ss_pred HHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 007407 488 TNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQ 567 (605)
Q Consensus 488 ~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~ 567 (605)
.+++..... ...+.+....+++........-+.|....--..-|+-.++.|++..|...|.+||..+|+
T Consensus 322 ~kaLte~Rt-----------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~ 390 (539)
T KOG0548|consen 322 QKALTEHRT-----------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE 390 (539)
T ss_pred HHHhhhhcC-----------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc
Confidence 444432211 111222233344444554444555665555555677788999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCC
Q 007407 568 AEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSE 603 (605)
Q Consensus 568 ~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~ 603 (605)
++.+|...|-++.+.|++..|.+-..++++++|+..
T Consensus 391 Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~ 426 (539)
T KOG0548|consen 391 DARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFI 426 (539)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHH
Confidence 999999999999999999999999999999999863
No 75
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.37 E-value=4e-11 Score=119.53 Aligned_cols=216 Identities=15% Similarity=0.114 Sum_probs=183.7
Q ss_pred HHHHHHHHHHHhCCCcHHHHH----HHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhh----cHHHHHHHHHHHHHh
Q 007407 350 NKIRALRMALDEIPDSVRLWK----ALVEISSEEEARILLHRAVECCPLDVELWLALVRLE----TYGVARSVLNKARKK 421 (605)
Q Consensus 350 ~a~~vl~kAle~~P~~~~lw~----~l~~le~~e~A~~~l~rAl~~~P~~~~lw~aLa~le----~~e~A~~vL~~al~~ 421 (605)
.|.+.|+.+|+..|. ++.+. .+..+.++..|..++...++..|.++.+....++++ ++++|.++|+.+++.
T Consensus 241 ~AekqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~ 319 (478)
T KOG1129|consen 241 RAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKL 319 (478)
T ss_pred hhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc
Confidence 355677788888876 33333 445566889999999999999999999999998864 689999999999999
Q ss_pred CCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhh
Q 007407 422 LPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDK 500 (605)
Q Consensus 422 ~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~ 500 (605)
.|.+.+..-..+.-+ ..++++.|..+|.+.++.--. +.+.+...+..|.-.+.++-+...+++++..--.+...
T Consensus 320 ~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-----speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~a 394 (478)
T KOG1129|consen 320 HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-----SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQA 394 (478)
T ss_pred CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-----ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchh
Confidence 999988655555333 677899999999999987533 56788999999999999999999999999875432347
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 007407 501 KRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVL 571 (605)
Q Consensus 501 ~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l 571 (605)
.++|++++...+..|++.-|..+|+-+|..+|++...+..||.+..+.|+.+.|+.+|+.|....|+-...
T Consensus 395 aDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~ 465 (478)
T KOG1129|consen 395 ADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEV 465 (478)
T ss_pred hhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccccc
Confidence 88999999999999999999999999999999999999999999999999999999999999999975443
No 76
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.36 E-value=4.5e-10 Score=121.01 Aligned_cols=318 Identities=16% Similarity=0.176 Sum_probs=223.3
Q ss_pred hhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcCchhHHHHHHHH
Q 007407 262 SELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLARPDEAKSVVAKG 341 (605)
Q Consensus 262 ~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~~~~Ak~~l~~a 341 (605)
-+.+.+++...+.+++++-.|.|++..-..+-..-..|+.+.|-.....|+...+.|.--|.-++-++..+. -|
T Consensus 18 yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK---~Y--- 91 (700)
T KOG1156|consen 18 YETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDK---KY--- 91 (700)
T ss_pred HHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhh---hH---
Confidence 466789999999999999999999987666666667899999999999999999999988998887775531 12
Q ss_pred HhhCCCcHHHHHHHHHHHHhCCCcHHHHHHH----HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH----hhcHHHHHH
Q 007407 342 VRQIPKSANKIRALRMALDEIPDSVRLWKAL----VEISSEEEARILLHRAVECCPLDVELWLALVR----LETYGVARS 413 (605)
Q Consensus 342 l~~~P~s~~a~~vl~kAle~~P~~~~lw~~l----~~le~~e~A~~~l~rAl~~~P~~~~lw~aLa~----le~~e~A~~ 413 (605)
.++.+.|+.||...|++..+|.-+ +++.+++.....=.+.++..|.....|+.+|. +++|..|..
T Consensus 92 -------~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 92 -------DEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred -------HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 234567778888888889999866 34557777777788889999999999998864 357889999
Q ss_pred HHHHHHHhC---CCCHHHHHHH-----HHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHH
Q 007407 414 VLNKARKKL---PKERAIWIAA-----AKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCV 484 (605)
Q Consensus 414 vL~~al~~~---p~~~~iwi~~-----a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~ 484 (605)
+++...+.. |.....=... ..+- ..|..+++.+.+..--. .+......-...|.++.+.+++++|.
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~-----~i~Dkla~~e~ka~l~~kl~~lEeA~ 239 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK-----QIVDKLAFEETKADLLMKLGQLEEAV 239 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh-----HHHHHHHHhhhHHHHHHHHhhHHhHH
Confidence 998888776 3322221111 1222 45554444433332211 12234566667889999999999999
Q ss_pred HHHHHHHHhCCCchhhHHHHHHHHHHHH-HcCCHHH--------------------------------------------
Q 007407 485 AIITNTIEIGVDEEDKKRTWVADVEECK-KRGSIET-------------------------------------------- 519 (605)
Q Consensus 485 ~i~~~al~~~p~~~~~~~~~~~~a~~~~-~~g~~~~-------------------------------------------- 519 (605)
.+|...+..+|+ +...+..+-..+. -.+..+.
T Consensus 240 ~~y~~Ll~rnPd---n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~ 316 (700)
T KOG1156|consen 240 KVYRRLLERNPD---NLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLS 316 (700)
T ss_pred HHHHHHHhhCch---hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhh
Confidence 999999999998 5544333322221 0110000
Q ss_pred ---------HHHHHHH---------HH-Hh----c--------------CCCHHHHH--HHHHHHHHcCCHHHHHHHHHH
Q 007407 520 ---------ARAIFSP---------AC-TV----F--------------LTKKNIWL--KAAQLEKSYGCRESLIALLRK 560 (605)
Q Consensus 520 ---------A~~i~~~---------al-~~----~--------------P~~~~~w~--~la~l~~~~g~~e~A~~~lek 560 (605)
-+.+|+. .+ .. . |-..-+|. .+++-+-..|+++.|..+++.
T Consensus 317 Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~ 396 (700)
T KOG1156|consen 317 KGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDL 396 (700)
T ss_pred cCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 1111111 10 00 0 11123333 345555677999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCC
Q 007407 561 AVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIP 600 (605)
Q Consensus 561 Al~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P 600 (605)
|+.++|.-..+++.-|+++...|+++.|-.++..|-+++-
T Consensus 397 AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 397 AIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred HhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence 9999999999999999999889999999999999988763
No 77
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.35 E-value=3.8e-09 Score=111.76 Aligned_cols=322 Identities=15% Similarity=0.160 Sum_probs=229.5
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcCc----hhHHHHHHHHHhh------
Q 007407 275 RAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLARP----DEAKSVVAKGVRQ------ 344 (605)
Q Consensus 275 ~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~~----~~Ak~~l~~al~~------ 344 (605)
++-++.||.+..+|..+.+-.... .++++|..+++.+...|.+..+|..++.-+.. +....++.++|..
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDL 88 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDL 88 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhH
Confidence 567899999999999999877665 99999999999999999999999999876432 2334444444431
Q ss_pred -----------CCCcHHHH----HHHHHHHH---hCCCcHHHHHHHHHhC-------------CHHHHHHHHHHHHHhCC
Q 007407 345 -----------IPKSANKI----RALRMALD---EIPDSVRLWKALVEIS-------------SEEEARILLHRAVECCP 393 (605)
Q Consensus 345 -----------~P~s~~a~----~vl~kAle---~~P~~~~lw~~l~~le-------------~~e~A~~~l~rAl~~~P 393 (605)
+++-...+ +.|.-+++ ..+.+..+|..++.+- +.+..+.+|+||+..--
T Consensus 89 W~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm 168 (656)
T KOG1914|consen 89 WKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPM 168 (656)
T ss_pred HHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcc
Confidence 11111111 12334444 4578888999887642 23678889999996533
Q ss_pred CCH-HHHHHHHHhh-----------------cHHHHHHHHHHHHHhC-------CC-----------CHHHHHHHHHHH-
Q 007407 394 LDV-ELWLALVRLE-----------------TYGVARSVLNKARKKL-------PK-----------ERAIWIAAAKLE- 436 (605)
Q Consensus 394 ~~~-~lw~aLa~le-----------------~~e~A~~vL~~al~~~-------p~-----------~~~iwi~~a~Le- 436 (605)
.|. .+|..+..++ .|.+|+.+++...... |. ..++|.++.++|
T Consensus 169 ~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEk 248 (656)
T KOG1914|consen 169 HNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEK 248 (656)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHh
Confidence 454 5888766554 2667777766554332 21 246799999888
Q ss_pred HcCC--------HHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhC
Q 007407 437 ANGN--------TSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGS--------------VVTCVAIITNTIEIG 494 (605)
Q Consensus 437 ~~g~--------~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~--------------~~~A~~i~~~al~~~ 494 (605)
.++= ...+.=++++++..++- ..++|..++++....++ ..+|..+|+++|..-
T Consensus 249 sNpL~t~~~~~~~~Rv~yayeQ~ll~l~~-----~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l 323 (656)
T KOG1914|consen 249 SNPLRTLDGTMLTRRVMYAYEQCLLYLGY-----HPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGL 323 (656)
T ss_pred cCCcccccccHHHHHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence 4431 23455567888887754 67899999988877666 678899999998753
Q ss_pred CCchhhHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 007407 495 VDEEDKKRTWVADVEECKKRGS---IETARAIFSPACTVFLTKK-NIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEV 570 (605)
Q Consensus 495 p~~~~~~~~~~~~a~~~~~~g~---~~~A~~i~~~al~~~P~~~-~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~ 570 (605)
.. .+..+++.++......-+ .+....+|.+++.+.-.++ -+|..+.++-.+..-.+.|+.+|.+|-+.--....
T Consensus 324 ~~--~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hh 401 (656)
T KOG1914|consen 324 LK--ENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHH 401 (656)
T ss_pred HH--HHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcch
Confidence 22 156677777776665444 7788889999998865443 45778888888888899999999999876433345
Q ss_pred HHHHHHHHH-HHcCChHHHHHHHHHHHHHCCCCCC
Q 007407 571 LWLMGAKEK-WLAGDVPATRDILQEAYAAIPNSEE 604 (605)
Q Consensus 571 l~l~~a~~~-~~~gd~~~Ar~il~kAl~~~P~~~~ 604 (605)
++...|-.+ ...+|..-|..||+-+++..++++.
T Consensus 402 VfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~ 436 (656)
T KOG1914|consen 402 VFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPE 436 (656)
T ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChH
Confidence 556666644 4599999999999999999999864
No 78
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.34 E-value=1.8e-11 Score=112.97 Aligned_cols=113 Identities=12% Similarity=-0.039 Sum_probs=61.8
Q ss_pred HHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007407 485 AIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTY 564 (605)
Q Consensus 485 ~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~ 564 (605)
+.+++++.++|+ + +...+..+...|++++|...|..++..+|.+..+|..+|.++...|++++|...|++|+..
T Consensus 14 ~~~~~al~~~p~---~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLSVDPE---T---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHcCHH---H---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 345555555443 1 3344555555555555555555555555555555555555555555555555555555555
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCC
Q 007407 565 CPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSE 603 (605)
Q Consensus 565 ~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~ 603 (605)
+|+++..|+.+|.++...|++++|+..|.+|++.+|+++
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~ 126 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADA 126 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence 555555555555555555555555555555555555543
No 79
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=1.8e-09 Score=110.75 Aligned_cols=289 Identities=10% Similarity=0.038 Sum_probs=213.8
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcCch-hHHHHHHHHHhhC
Q 007407 267 ILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLARPD-EAKSVVAKGVRQI 345 (605)
Q Consensus 267 ~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~~~-~Ak~~l~~al~~~ 345 (605)
..-+..++-....+-|+|.....+.|+++...|+..+|.-.|++..-.+|.....-=+++.|...+ .+..
T Consensus 214 ~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~--------- 284 (564)
T KOG1174|consen 214 DASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQ--------- 284 (564)
T ss_pred hhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhh---------
Confidence 444555666666778999998999999999999999999999999888888776655555443221 1110
Q ss_pred CCcHHHHHHHHHHHHhCCCcHHHHHHHHHh--C--CHHHHHHHHHHHHHhCCCCHHHHH----HHHHhhcHHHHHHHHHH
Q 007407 346 PKSANKIRALRMALDEIPDSVRLWKALVEI--S--SEEEARILLHRAVECCPLDVELWL----ALVRLETYGVARSVLNK 417 (605)
Q Consensus 346 P~s~~a~~vl~kAle~~P~~~~lw~~l~~l--e--~~e~A~~~l~rAl~~~P~~~~lw~----aLa~le~~e~A~~vL~~ 417 (605)
-..+....+....+...-|...+.+ + ++..|..+-++++...|.++..++ .|.++++++.|.-.|..
T Consensus 285 -----~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~ 359 (564)
T KOG1174|consen 285 -----DSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRT 359 (564)
T ss_pred -----HHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHH
Confidence 0011122223332333445433222 2 667888888999999999998887 34567889999999999
Q ss_pred HHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHH-HHHHHHcC-CHHHHHHHHHHHHHhC
Q 007407 418 ARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKE-AEVADRAG-SVVTCVAIITNTIEIG 494 (605)
Q Consensus 418 al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~-A~~~e~~g-~~~~A~~i~~~al~~~ 494 (605)
|...-|...+++--+...+ .+|...+|.-+-+.++..+|.+. ...... +..+.... -.+.|...+++.+.+.
T Consensus 360 Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA-----~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~ 434 (564)
T KOG1174|consen 360 AQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSA-----RSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN 434 (564)
T ss_pred HHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcch-----hhhhhhcceeeccCchhHHHHHHHHHhhhccC
Confidence 9999999888888877666 88888888888888888887642 111112 12222111 2578999999999999
Q ss_pred CCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 007407 495 VDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLM 574 (605)
Q Consensus 495 p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~ 574 (605)
|. ...+-...|+++...|.+..+++++++.|..+|+. .+...||.+....+.+.+|...|..|+.++|++....-.
T Consensus 435 P~---Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~G 510 (564)
T KOG1174|consen 435 PI---YTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRG 510 (564)
T ss_pred Cc---cHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHH
Confidence 88 88888899999999999999999999999999987 788999999999999999999999999999998776554
Q ss_pred HHHH
Q 007407 575 GAKE 578 (605)
Q Consensus 575 ~a~~ 578 (605)
+-+.
T Consensus 511 l~~l 514 (564)
T KOG1174|consen 511 LRLL 514 (564)
T ss_pred HHHH
Confidence 4443
No 80
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=9.8e-11 Score=120.17 Aligned_cols=280 Identities=13% Similarity=0.010 Sum_probs=209.3
Q ss_pred chhhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcCchhHHHHHH
Q 007407 260 TNSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLARPDEAKSVVA 339 (605)
Q Consensus 260 ~~~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~~~~Ak~~l~ 339 (605)
......++..|...+..+++++|++.+.|-..|-.++..|+++.|..-.++.++..|......++..+++.. ...+.
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a---~~~~i 134 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLA---LSDLI 134 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhh---hHHHH
Confidence 345677899999999999999999999999999999999999999999999999999888765555555432 11111
Q ss_pred HHHhhCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHhCCHHHHHHHHHHHHHhC---CCCHHHHH----HHHHhhcHHHHH
Q 007407 340 KGVRQIPKSANKIRALRMALDEIPDSVRLWKALVEISSEEEARILLHRAVECC---PLDVELWL----ALVRLETYGVAR 412 (605)
Q Consensus 340 ~al~~~P~s~~a~~vl~kAle~~P~~~~lw~~l~~le~~e~A~~~l~rAl~~~---P~~~~lw~----aLa~le~~e~A~ 412 (605)
.+- +.|+ +...++ ...|...+++.+... |....+-+ .|+.+..+.+|+
T Consensus 135 ~A~----------~~~~--------~~~~~~-------~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~ 189 (486)
T KOG0550|consen 135 EAE----------EKLK--------SKQAYK-------AANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQ 189 (486)
T ss_pred HHH----------HHhh--------hhhhhH-------HhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHH
Confidence 111 0110 000000 011111122211111 22111111 234556778888
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcc-------cccHHHHHHHHHHHHHcCCHHHHH
Q 007407 413 SVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEV-------VIDRDTWMKEAEVADRAGSVVTCV 484 (605)
Q Consensus 413 ~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~-------~~~~~~wl~~A~~~e~~g~~~~A~ 484 (605)
.+--..++..+++.+....-+.+. .+++.++++..|+++|...|.+.. +.....|...+...-+.|++..|.
T Consensus 190 ~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~ 269 (486)
T KOG0550|consen 190 SEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAY 269 (486)
T ss_pred HHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHH
Confidence 887788888888887777766644 777888888888888888776522 235678999999999999999999
Q ss_pred HHHHHHHHhCCCch-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007407 485 AIITNTIEIGVDEE-DKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVT 563 (605)
Q Consensus 485 ~i~~~al~~~p~~~-~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~ 563 (605)
++|..+|.++|++. .+...|+.++...++.|+..+|+..+..|+.++|....+++..|..+...+++++|.+.|++|++
T Consensus 270 E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 270 ECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999853 36677899999999999999999999999999999999999999999999999999999999998
Q ss_pred hCCC
Q 007407 564 YCPQ 567 (605)
Q Consensus 564 ~~P~ 567 (605)
...+
T Consensus 350 ~~~s 353 (486)
T KOG0550|consen 350 LEKD 353 (486)
T ss_pred hccc
Confidence 8643
No 81
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.32 E-value=5.8e-09 Score=110.47 Aligned_cols=305 Identities=16% Similarity=0.073 Sum_probs=203.1
Q ss_pred hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHH---HHHHHhhcCchhHHHHHHHHHhhCCCcHHHHHHHH
Q 007407 280 NSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDV---WLEACRLARPDEAKSVVAKGVRQIPKSANKIRALR 356 (605)
Q Consensus 280 ~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~l---wle~a~L~~~~~Ak~~l~~al~~~P~s~~a~~vl~ 356 (605)
.+|+.+.+|..+|.++...|+...|...+.+..+.+|.+... ++..+.+. ....+...+...++
T Consensus 1 ~dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~-------------~~~g~~~~A~~~~~ 67 (355)
T cd05804 1 ADPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSA-------------WIAGDLPKALALLE 67 (355)
T ss_pred CCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHH-------------HHcCCHHHHHHHHH
Confidence 379999999999999999999999888888888888866432 21111110 01111134566777
Q ss_pred HHHHhCCCcHHHHH---HHHHhC----CHHHHHHHHHHHHHhCCCCHHHHHHHH----HhhcHHHHHHHHHHHHHhCCCC
Q 007407 357 MALDEIPDSVRLWK---ALVEIS----SEEEARILLHRAVECCPLDVELWLALV----RLETYGVARSVLNKARKKLPKE 425 (605)
Q Consensus 357 kAle~~P~~~~lw~---~l~~le----~~e~A~~~l~rAl~~~P~~~~lw~aLa----~le~~e~A~~vL~~al~~~p~~ 425 (605)
++++..|++...|. .++.++ ....+...+.......|.....+..++ ..+++++|...++++++..|.+
T Consensus 68 ~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~ 147 (355)
T cd05804 68 QLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDD 147 (355)
T ss_pred HHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 77888888877665 333333 334455555544445566655554333 3357999999999999999999
Q ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHH
Q 007407 426 RAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTW 504 (605)
Q Consensus 426 ~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~ 504 (605)
+.++..++.+. ..|+.+++..++++++...|... ......|...|..+...|+++.|..+|+.++...|... .....
T Consensus 148 ~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~-~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~-~~~~~ 225 (355)
T cd05804 148 AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSS-MLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESD-PALDL 225 (355)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCc-chhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCC-hHHHH
Confidence 99999999876 99999999999999998876421 12335677889999999999999999999976655211 11111
Q ss_pred H---HHHHHHHHcCCHHHHHHH---HHHHHHhcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------
Q 007407 505 V---ADVEECKKRGSIETARAI---FSPACTVFLT--KKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQ--------- 567 (605)
Q Consensus 505 ~---~~a~~~~~~g~~~~A~~i---~~~al~~~P~--~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~--------- 567 (605)
+ .....+...|....+... ........|. ........+.++...|+.+.|...++......-.
T Consensus 226 ~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 305 (355)
T cd05804 226 LDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPAR 305 (355)
T ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHH
Confidence 0 111222233433333322 2222222232 2233345677888889999999999888664421
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHC
Q 007407 568 AEVLWLMGAKEKWLAGDVPATRDILQEAYAAI 599 (605)
Q Consensus 568 ~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~ 599 (605)
...+.+..|..++..|+++.|...|..|+...
T Consensus 306 ~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 306 DVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred hhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 24456777888899999999999999998753
No 82
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.32 E-value=2.4e-10 Score=127.57 Aligned_cols=338 Identities=13% Similarity=0.092 Sum_probs=239.8
Q ss_pred ccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcCc----hhHHHHHHH
Q 007407 265 RDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLARP----DEAKSVVAK 340 (605)
Q Consensus 265 gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~~----~~Ak~~l~~ 340 (605)
.+...|...|-++++.+|.-+++|-.++.++...-+...|+..|.++.+.+|.+.+.|-..+..+.. +.|..+.-.
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 4588899999999999999999999999999776699999999999999999999998887776532 344433322
Q ss_pred HHhhC------------------CCc-HHHHHHHHHHHHhCCCcHHHHHHHHHhC----CHHHHHHHHHHHHHhCCCCHH
Q 007407 341 GVRQI------------------PKS-ANKIRALRMALDEIPDSVRLWKALVEIS----SEEEARILLHRAVECCPLDVE 397 (605)
Q Consensus 341 al~~~------------------P~s-~~a~~vl~kAle~~P~~~~lw~~l~~le----~~e~A~~~l~rAl~~~P~~~~ 397 (605)
+-+.. |++ ..+...++.|+...|.+.++|..+.+.+ .+.-|.+++.+|....|.+..
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y 631 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKY 631 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHH
Confidence 22211 122 4567789999999999999999997764 779999999999999999987
Q ss_pred HHHHHH----HhhcHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccC---cccc
Q 007407 398 LWLALV----RLETYGVARSVLNKARKKLPKE-------RAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGE---EVVI 462 (605)
Q Consensus 398 lw~aLa----~le~~e~A~~vL~~al~~~p~~-------~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~---~~~~ 462 (605)
..+--+ .+++|.+|...+...+....+. .+..+..+... ..|=..++..+++++++.+--. ....
T Consensus 632 ~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~ 711 (1238)
T KOG1127|consen 632 GRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQS 711 (1238)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence 665443 3468999999888888776443 33344444333 4554556666777666554210 0012
Q ss_pred cHHHHHHHHHHHHHcCC-----HHH-HHHHHHH-HHHh--CCCc----------------hhhHHHHHHHHHHHHH----
Q 007407 463 DRDTWMKEAEVADRAGS-----VVT-CVAIITN-TIEI--GVDE----------------EDKKRTWVADVEECKK---- 513 (605)
Q Consensus 463 ~~~~wl~~A~~~e~~g~-----~~~-A~~i~~~-al~~--~p~~----------------~~~~~~~~~~a~~~~~---- 513 (605)
++-.|.-.+..|.-.-. +.. ...|+.. .... .+.+ ......|..++..+.+
T Consensus 712 ~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~ 791 (1238)
T KOG1127|consen 712 DRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLL 791 (1238)
T ss_pred hHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHH
Confidence 45667765554432110 000 0111111 0000 1110 0124457777665554
Q ss_pred ----cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 007407 514 ----RGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATR 589 (605)
Q Consensus 514 ----~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar 589 (605)
..+...|+.++.++++...++..+|..||.+ ...|++.-+...|-+++...|.+...|+.++-+..+..|++.|.
T Consensus 792 l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~ 870 (1238)
T KOG1127|consen 792 LGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAE 870 (1238)
T ss_pred cCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhh
Confidence 2234578999999999999999999999988 55588889999999999999999999999999988999999999
Q ss_pred HHHHHHHHHCCCCC
Q 007407 590 DILQEAYAAIPNSE 603 (605)
Q Consensus 590 ~il~kAl~~~P~~~ 603 (605)
..+.++..++|.|-
T Consensus 871 ~af~~~qSLdP~nl 884 (1238)
T KOG1127|consen 871 PAFSSVQSLDPLNL 884 (1238)
T ss_pred HHHHhhhhcCchhh
Confidence 99999999999763
No 83
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.32 E-value=3.1e-10 Score=113.15 Aligned_cols=175 Identities=13% Similarity=0.031 Sum_probs=117.4
Q ss_pred CHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHH
Q 007407 425 ERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRT 503 (605)
Q Consensus 425 ~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~ 503 (605)
.+..++..+... ..|+++.|...|++++...|.+. .....|+..|..+...|+++.|...++.++...|+++.....
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~--~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSP--YAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch--hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 345555555443 55666666666666666555431 123455666666666666666666666666666653323334
Q ss_pred HHHHHHHHHHc--------CCHHHHHHHHHHHHHhcCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHH
Q 007407 504 WVADVEECKKR--------GSIETARAIFSPACTVFLTKKNIW-----------------LKAAQLEKSYGCRESLIALL 558 (605)
Q Consensus 504 ~~~~a~~~~~~--------g~~~~A~~i~~~al~~~P~~~~~w-----------------~~la~l~~~~g~~e~A~~~l 558 (605)
|+..+..+... |+++.|+..|.+++..+|++...+ ..+|.++...|++.+|+..|
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~ 189 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRF 189 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 55555555443 556666666666666666665443 35678888999999999999
Q ss_pred HHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCC
Q 007407 559 RKAVTYCPQA---EVLWLMGAKEKWLAGDVPATRDILQEAYAAIPN 601 (605)
Q Consensus 559 ekAl~~~P~~---~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~ 601 (605)
++++..+|++ +.+|..++..+.+.|++++|..+++......|+
T Consensus 190 ~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 190 ETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 9999998865 578999999999999999999988887776663
No 84
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.30 E-value=1e-10 Score=113.77 Aligned_cols=124 Identities=10% Similarity=0.105 Sum_probs=113.9
Q ss_pred cCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH-HHcCC--HHH
Q 007407 477 AGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLE-KSYGC--RES 553 (605)
Q Consensus 477 ~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~-~~~g~--~e~ 553 (605)
.+..+++...++.++..+|+ +...|+.++..+...|++++|...|++++++.|++..+|..+|.++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~---~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ---NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 34567888889999999998 8999999999999999999999999999999999999999999964 67777 599
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCC
Q 007407 554 LIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSE 603 (605)
Q Consensus 554 A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~ 603 (605)
|..+|+++++.+|+++.++..+|..+...|++++|...|+++++.+|.+.
T Consensus 129 A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 129 TREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 99999999999999999999999999999999999999999999998654
No 85
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.27 E-value=3.4e-09 Score=118.62 Aligned_cols=184 Identities=14% Similarity=0.076 Sum_probs=154.2
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHH
Q 007407 409 GVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAII 487 (605)
Q Consensus 409 e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~ 487 (605)
..|...|-++++.+|+-..+|-.+|.++ ..-+...|.+.|.+|++..+. +...|-..+..+......+.|..|.
T Consensus 475 ~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-----daeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 475 ALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-----DAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-----hhhhHHHHHHHhhccccHHHHHHHH
Confidence 4567778888888888888999999877 444788899999999987654 5678888888888888888888886
Q ss_pred HHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 007407 488 TNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQ 567 (605)
Q Consensus 488 ~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~ 567 (605)
-.+-+..|. ......|...+-.+...+++..|+..|+.|++.+|++...|..+|..|...|.+..|+++|.+|....|.
T Consensus 550 l~~~qka~a-~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~ 628 (1238)
T KOG1127|consen 550 LRAAQKAPA-FACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL 628 (1238)
T ss_pred HHHhhhchH-HHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH
Confidence 666555554 2356778888888999999999999999999999999999999999999999999999999999999998
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007407 568 AEVLWLMGAKEKWLAGDVPATRDILQEAYAA 598 (605)
Q Consensus 568 ~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~ 598 (605)
+--.-+.-|-.+...|.+.+|..+|...+..
T Consensus 629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~~ 659 (1238)
T KOG1127|consen 629 SKYGRFKEAVMECDNGKYKEALDALGLIIYA 659 (1238)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 8766677777777899999999999887654
No 86
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.27 E-value=9.3e-11 Score=106.33 Aligned_cols=117 Identities=15% Similarity=0.108 Sum_probs=106.1
Q ss_pred HHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007407 485 AIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTY 564 (605)
Q Consensus 485 ~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~ 564 (605)
+.++.++..+|+ +....+..+..+...|++++|...|+.++..+|.+..+|..+|.++...|++++|..+|++++..
T Consensus 4 ~~~~~~l~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 4 ATLKDLLGLDSE---QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hhHHHHHcCChh---hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 457788888887 66777888888999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCCC
Q 007407 565 CPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSEE 604 (605)
Q Consensus 565 ~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~~ 604 (605)
+|+++.+|+.+|.+++..|++++|...|+++++.+|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 9999999999999999999999999999999999998764
No 87
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.25 E-value=2.6e-10 Score=105.22 Aligned_cols=124 Identities=10% Similarity=-0.047 Sum_probs=114.1
Q ss_pred HHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHH
Q 007407 445 GKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIF 524 (605)
Q Consensus 445 ~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~ 524 (605)
..+|+++++..|. .|...+..+...|.++.|...|+.++..+|. +..+|+.++..+...|++++|...|
T Consensus 13 ~~~~~~al~~~p~--------~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~lg~~~~~~g~~~~A~~~y 81 (144)
T PRK15359 13 EDILKQLLSVDPE--------TVYASGYASWQEGDYSRAVIDFSWLVMAQPW---SWRAHIALAGTWMMLKEYTTAINFY 81 (144)
T ss_pred HHHHHHHHHcCHH--------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3578888887654 3667788899999999999999999999998 8999999999999999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007407 525 SPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEK 579 (605)
Q Consensus 525 ~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~ 579 (605)
.+++..+|++..+|+.+|.++...|++++|+..|++|+..+|+++..|...+...
T Consensus 82 ~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 82 GHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998777654
No 88
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=99.25 E-value=4.3e-09 Score=113.43 Aligned_cols=254 Identities=17% Similarity=0.266 Sum_probs=193.4
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHhC----CHHHHHHHHHHHHHhCCCCHHHHHHHHHh-----hcHHHHHHHHHHHHH
Q 007407 350 NKIRALRMALDEIPDSVRLWKALVEIS----SEEEARILLHRAVECCPLDVELWLALVRL-----ETYGVARSVLNKARK 420 (605)
Q Consensus 350 ~a~~vl~kAle~~P~~~~lw~~l~~le----~~e~A~~~l~rAl~~~P~~~~lw~aLa~l-----e~~e~A~~vL~~al~ 420 (605)
.++.+|...|...|....+|+.++.++ ..+.+.++|+++|.-.|.++++|+.|... +..+..+..|++|..
T Consensus 63 ~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~ 142 (577)
T KOG1258|consen 63 ALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKS 142 (577)
T ss_pred HHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 456788888999999999999997765 66899999999999999999999988654 356678889999999
Q ss_pred hCCC---CHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccc------------------cHHHHHHHH-HHHH--
Q 007407 421 KLPK---ERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVI------------------DRDTWMKEA-EVAD-- 475 (605)
Q Consensus 421 ~~p~---~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~------------------~~~~wl~~A-~~~e-- 475 (605)
.... +..+|-.+...+ .+++...+..+|++.++. |...... ..+...... ..++
T Consensus 143 ~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei-P~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~ 221 (577)
T KOG1258|consen 143 YVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI-PLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERS 221 (577)
T ss_pred hcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh-hhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhh
Confidence 8876 467899998888 788888888888887654 2111000 001000000 0000
Q ss_pred -------------H--------cCCHHHHHHHHHHHHH-----------------------------hCCCchhhHHHHH
Q 007407 476 -------------R--------AGSVVTCVAIITNTIE-----------------------------IGVDEEDKKRTWV 505 (605)
Q Consensus 476 -------------~--------~g~~~~A~~i~~~al~-----------------------------~~p~~~~~~~~~~ 505 (605)
. .+..+.+..+..+.+. ..|-+......|.
T Consensus 222 ~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~ 301 (577)
T KOG1258|consen 222 KITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWR 301 (577)
T ss_pred hcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHH
Confidence 0 0111222222222111 1222345778899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Q 007407 506 ADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYC-PQAEVLWLMGAKEKWLAGD 584 (605)
Q Consensus 506 ~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~-P~~~~l~l~~a~~~~~~gd 584 (605)
.++...+..|+++...-.|++++.-.-.+..+|..++......|+.+-+..++.++++.. |+.+.+.+++|.+....||
T Consensus 302 ~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n 381 (577)
T KOG1258|consen 302 YYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGN 381 (577)
T ss_pred HHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999999999999999999875 8899999999999999999
Q ss_pred hHHHHHHHHHHHHHCCCCCC
Q 007407 585 VPATRDILQEAYAAIPNSEE 604 (605)
Q Consensus 585 ~~~Ar~il~kAl~~~P~~~~ 604 (605)
+..|+.+|++..+-.|+...
T Consensus 382 ~~~A~~~lq~i~~e~pg~v~ 401 (577)
T KOG1258|consen 382 FDDAKVILQRIESEYPGLVE 401 (577)
T ss_pred HHHHHHHHHHHHhhCCchhh
Confidence 99999999999998887653
No 89
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.24 E-value=5.7e-09 Score=104.44 Aligned_cols=219 Identities=11% Similarity=0.062 Sum_probs=113.3
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHhh----cHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHH-HcCCHHHHHH
Q 007407 377 SEEEARILLHRAVECCPLDVELWLALVRLE----TYGVARSVLNKARKKLPKE-----RAIWIAAAKLE-ANGNTSMVGK 446 (605)
Q Consensus 377 ~~e~A~~~l~rAl~~~P~~~~lw~aLa~le----~~e~A~~vL~~al~~~p~~-----~~iwi~~a~Le-~~g~~~~a~~ 446 (605)
+++.|..+|-..++..|...++.++|++|. +.+.|+.+-+..++. |+- ..+...+|+=+ ..|=++.|..
T Consensus 50 Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 50 QPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred CcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 445566666666666666666666665553 345555554433322 321 11233334322 4455555555
Q ss_pred HHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch--hhHHHHHHHHHHHHHcCCHHHHHHHH
Q 007407 447 IIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEE--DKKRTWVADVEECKKRGSIETARAIF 524 (605)
Q Consensus 447 i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~--~~~~~~~~~a~~~~~~g~~~~A~~i~ 524 (605)
+|...++... ........+..+|......+.|+.+-++..++++... .-..++.++|..+....+++.|+..+
T Consensus 129 ~f~~L~de~e-----fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 129 IFNQLVDEGE-----FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHhcchh-----hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 5555443210 1222333444455555555555555555555554411 12334555555555555566666666
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCC
Q 007407 525 SPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQA-EVLWLMGAKEKWLAGDVPATRDILQEAYAAIPN 601 (605)
Q Consensus 525 ~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~-~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~ 601 (605)
.+|++.+|+..-+=..+|.++...|+++.|.+.++.+++.+|+. +.+..++..+|.+.|+.++.+..|.++.+.+++
T Consensus 204 ~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 204 KKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 66666666665555555666666666666666666666665544 444455555555566666666666666555554
No 90
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.24 E-value=5.4e-09 Score=108.07 Aligned_cols=189 Identities=12% Similarity=0.034 Sum_probs=164.6
Q ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHH
Q 007407 407 TYGVARSVLNKARKKLPKERAIWIAAAK-LEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVA 485 (605)
Q Consensus 407 ~~e~A~~vL~~al~~~p~~~~iwi~~a~-Le~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~ 485 (605)
+++.|...|..|+.......+++++.+. .+..|++++|...|-+.-..+.. +.++..+.|.+++...++..|.+
T Consensus 505 d~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~n-----n~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 505 DLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLN-----NAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred cHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHhhCHHHHHH
Confidence 3678889999999888778888888885 44889999999988886555533 56788899999999999999999
Q ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 007407 486 IITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYC 565 (605)
Q Consensus 486 i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~ 565 (605)
+|-.+.++-|+ .+.++-.++++|-+.|+-..|..++-...+.||.+....--|+..|....-.+.++.+|++|--..
T Consensus 580 ~~~q~~slip~---dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliq 656 (840)
T KOG2003|consen 580 LLMQANSLIPN---DPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ 656 (840)
T ss_pred HHHHhcccCCC---CHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC
Confidence 99999998888 778888999999999999999999999999999999887777888888777899999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCC
Q 007407 566 PQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSE 603 (605)
Q Consensus 566 P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~ 603 (605)
|+....-+|.|.+..+.|++.+|...|...-...|.+.
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedl 694 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDL 694 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccch
Confidence 98777778888899899999999999999999999875
No 91
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.23 E-value=1.8e-09 Score=104.84 Aligned_cols=198 Identities=14% Similarity=0.125 Sum_probs=150.4
Q ss_pred CHHHHHHHHHHHHHhCCCC---HHHHHHH-------HHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHcCCHHHHH
Q 007407 377 SEEEARILLHRAVECCPLD---VELWLAL-------VRLETYGVARSVLNKARKKLPKERAIWIAAAK-LEANGNTSMVG 445 (605)
Q Consensus 377 ~~e~A~~~l~rAl~~~P~~---~~lw~aL-------a~le~~e~A~~vL~~al~~~p~~~~iwi~~a~-Le~~g~~~~a~ 445 (605)
++++...+....+...+.. .+.|..+ ..-.+..-|+..++..+..+|.++.+-...|. ||..|+.++|.
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~ 106 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAI 106 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHH
Confidence 5566666666555544332 2344322 22346778999999999999999988888775 55888899999
Q ss_pred HHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007407 446 KIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFS 525 (605)
Q Consensus 446 ~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~ 525 (605)
++|+..++..|.+.+ .+.........+|....|+.-+...+..++. +.++|..++++|...|+|+.|.-+|+
T Consensus 107 e~y~~lL~ddpt~~v-----~~KRKlAilka~GK~l~aIk~ln~YL~~F~~---D~EAW~eLaeiY~~~~~f~kA~fClE 178 (289)
T KOG3060|consen 107 EYYESLLEDDPTDTV-----IRKRKLAILKAQGKNLEAIKELNEYLDKFMN---DQEAWHELAEIYLSEGDFEKAAFCLE 178 (289)
T ss_pred HHHHHHhccCcchhH-----HHHHHHHHHHHcCCcHHHHHHHHHHHHHhcC---cHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 999998887766433 3334444566678778888888888888888 78899999999999999999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 007407 526 PACTVFLTKKNIWLKAAQLEKSYG---CRESLIALLRKAVTYCPQAEVLWLMGAKEKWLA 582 (605)
Q Consensus 526 ~al~~~P~~~~~w~~la~l~~~~g---~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~ 582 (605)
+.+-+.|.++-+...+|.++...| +.+.++++|.+|++++|++...|+......+..
T Consensus 179 E~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~l 238 (289)
T KOG3060|consen 179 ELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSAL 238 (289)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHH
Confidence 999999999999999999888776 456689999999999997777777665555543
No 92
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.22 E-value=1.2e-08 Score=102.17 Aligned_cols=248 Identities=13% Similarity=0.035 Sum_probs=190.6
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHhC----CHHHHHHHHHHHHHhCCCCHHHHHHHH--Hh-------hcHHHHHHHH
Q 007407 349 ANKIRALRMALDEIPDSVRLWKALVEIS----SEEEARILLHRAVECCPLDVELWLALV--RL-------ETYGVARSVL 415 (605)
Q Consensus 349 ~~a~~vl~kAle~~P~~~~lw~~l~~le----~~e~A~~~l~rAl~~~P~~~~lw~aLa--~l-------e~~e~A~~vL 415 (605)
++|...|-..++..|...++-..+.+|. +.+.|+.+.+..++ .|+-+.--..++ .| +-++.|..+|
T Consensus 52 dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f 130 (389)
T COG2956 52 DKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIF 130 (389)
T ss_pred chHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 4556666677778888888888888875 66999998877664 566544332222 22 2478899999
Q ss_pred HHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 007407 416 NKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIG 494 (605)
Q Consensus 416 ~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~ 494 (605)
+.......--..+.-.+..++ ...+..+|+.+-++.++..+......-...+..+|..+....+.+.|+..+.+++..+
T Consensus 131 ~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~ 210 (389)
T COG2956 131 NQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD 210 (389)
T ss_pred HHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC
Confidence 876643222344555566666 6778899998888887776553221223456677777777888999999999999999
Q ss_pred CCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 007407 495 VDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTK-KNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWL 573 (605)
Q Consensus 495 p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~-~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l 573 (605)
|. +..+-+.++.++...|+++.|...++.+++.+|.. +.+...|...|.+.|+.++.+..+.++++..+..... +
T Consensus 211 ~~---cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~-l 286 (389)
T COG2956 211 KK---CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAE-L 286 (389)
T ss_pred cc---ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHH-H
Confidence 98 88888889999999999999999999999999997 5778889999999999999999999999999865444 6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCC
Q 007407 574 MGAKEKWLAGDVPATRDILQEAYAAIPN 601 (605)
Q Consensus 574 ~~a~~~~~~gd~~~Ar~il~kAl~~~P~ 601 (605)
+++.......-++.|..++.+-+...|+
T Consensus 287 ~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt 314 (389)
T COG2956 287 MLADLIELQEGIDAAQAYLTRQLRRKPT 314 (389)
T ss_pred HHHHHHHHhhChHHHHHHHHHHHhhCCc
Confidence 6666555555589999999999999885
No 93
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.21 E-value=2e-09 Score=114.05 Aligned_cols=99 Identities=14% Similarity=-0.053 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHH
Q 007407 501 KRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAE----VLWLMGA 576 (605)
Q Consensus 501 ~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~----~l~l~~a 576 (605)
...+...+..+...|++++|...++++++..|++..++..++.++...|++++|+.++++++...|.++ ..|..+|
T Consensus 114 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la 193 (355)
T cd05804 114 WYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLA 193 (355)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHH
Confidence 333334444555555555555555555555555555555555555555555555555555555443221 2234445
Q ss_pred HHHHHcCChHHHHHHHHHHHHHC
Q 007407 577 KEKWLAGDVPATRDILQEAYAAI 599 (605)
Q Consensus 577 ~~~~~~gd~~~Ar~il~kAl~~~ 599 (605)
.++...|++++|..+|++++...
T Consensus 194 ~~~~~~G~~~~A~~~~~~~~~~~ 216 (355)
T cd05804 194 LFYLERGDYEAALAIYDTHIAPS 216 (355)
T ss_pred HHHHHCCCHHHHHHHHHHHhccc
Confidence 55555555555555555554333
No 94
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.20 E-value=6e-09 Score=101.25 Aligned_cols=170 Identities=14% Similarity=0.161 Sum_probs=125.9
Q ss_pred CHHHHHHHHH--H-H-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhh
Q 007407 425 ERAIWIAAAK--L-E-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDK 500 (605)
Q Consensus 425 ~~~iwi~~a~--L-e-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~ 500 (605)
..++|..+-+ + . ..|..+-|..++++.-..+|. +..+-..+|..++..|+.+.|.++|...++-+|. +
T Consensus 48 g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~-----S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt---~ 119 (289)
T KOG3060|consen 48 GDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPG-----SKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPT---D 119 (289)
T ss_pred CchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC-----ChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcc---h
Confidence 3455655433 1 1 456677777777777776665 3456667777788888888888888888887776 6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007407 501 KRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKW 580 (605)
Q Consensus 501 ~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~ 580 (605)
..++.....+...+|+.-+|+..+..-++.||++..+|..++.+|...|+++.|.-+|++.+-+.|.++..+..||.+++
T Consensus 120 ~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Y 199 (289)
T KOG3060|consen 120 TVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLY 199 (289)
T ss_pred hHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 66666666667777777788888888888888888888888888888888888888888888888888888888888766
Q ss_pred Hc---CChHHHHHHHHHHHHHCCCC
Q 007407 581 LA---GDVPATRDILQEAYAAIPNS 602 (605)
Q Consensus 581 ~~---gd~~~Ar~il~kAl~~~P~~ 602 (605)
-. .++.-|+++|.+|++++|.+
T Consensus 200 t~gg~eN~~~arkyy~~alkl~~~~ 224 (289)
T KOG3060|consen 200 TQGGAENLELARKYYERALKLNPKN 224 (289)
T ss_pred HHhhHHHHHHHHHHHHHHHHhChHh
Confidence 53 36667888888888888743
No 95
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.19 E-value=6.7e-09 Score=113.25 Aligned_cols=227 Identities=15% Similarity=0.123 Sum_probs=174.5
Q ss_pred HHHhCCHHHHHHHHHHHHHh--------CCCCHHHHHHHH----HhhcHHHHHHHHHHHHHhC-----CCCHH---HHHH
Q 007407 372 LVEISSEEEARILLHRAVEC--------CPLDVELWLALV----RLETYGVARSVLNKARKKL-----PKERA---IWIA 431 (605)
Q Consensus 372 l~~le~~e~A~~~l~rAl~~--------~P~~~~lw~aLa----~le~~e~A~~vL~~al~~~-----p~~~~---iwi~ 431 (605)
++..++++.|..+++.|+.. +|.=......++ .+..|.+|..+|++|+... ++++. ++++
T Consensus 209 y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~n 288 (508)
T KOG1840|consen 209 YAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNN 288 (508)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 34445899999999999988 343223333333 3457999999999999874 34544 5778
Q ss_pred HHHHH-HcCCHHHHHHHHHHHHHHhccCc---ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCchhhHH
Q 007407 432 AAKLE-ANGNTSMVGKIIERGIRALQGEE---VVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEI-----GVDEEDKKR 502 (605)
Q Consensus 432 ~a~Le-~~g~~~~a~~i~~~al~~~p~~~---~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~-----~p~~~~~~~ 502 (605)
++.++ ..|++.+|..++++|++.....- .+.-.......+..+...+.+++|..++++++++ ++.++.-..
T Consensus 289 La~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~ 368 (508)
T KOG1840|consen 289 LAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAK 368 (508)
T ss_pred HHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHH
Confidence 88888 99999999999999998875521 1123355667778888889999999999998886 233223567
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---C-CCC--
Q 007407 503 TWVADVEECKKRGSIETARAIFSPACTVF--------LTKKNIWLKAAQLEKSYGCRESLIALLRKAVTY---C-PQA-- 568 (605)
Q Consensus 503 ~~~~~a~~~~~~g~~~~A~~i~~~al~~~--------P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~---~-P~~-- 568 (605)
++.+++.++...|++.+|+.+|++|+.+. +.....+..+|..+.+.+.+.+|.++|.++..+ | |++
T Consensus 369 ~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~ 448 (508)
T KOG1840|consen 369 IYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPD 448 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCc
Confidence 78899999999999999999999999874 222345666788888899999999999998765 2 444
Q ss_pred -HHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007407 569 -EVLWLMGAKEKWLAGDVPATRDILQEAYAA 598 (605)
Q Consensus 569 -~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~ 598 (605)
...+..+|..|..+|+++.|.++.++++.+
T Consensus 449 ~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 449 VTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 556888999999999999999999999854
No 96
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.15 E-value=2.9e-09 Score=121.18 Aligned_cols=133 Identities=18% Similarity=0.068 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 007407 464 RDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQ 543 (605)
Q Consensus 464 ~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~ 543 (605)
.+....+|......|..++|...++.++...|+ +..++..++..+.+.+++++|+..+++++...|++..+.+.+|.
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd---~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~ 162 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD---SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAK 162 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC---cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 455556666666666666666666666666665 56666666666666666666666666666666666666666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHC
Q 007407 544 LEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAI 599 (605)
Q Consensus 544 l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~ 599 (605)
++.+.|.+++|..+|++++..+|+++.+|+.+|..+...|+.++|...|++|+...
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 66666666666666666666556666666666666666666666666666666543
No 97
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.15 E-value=1.2e-07 Score=104.59 Aligned_cols=265 Identities=19% Similarity=0.162 Sum_probs=188.4
Q ss_pred hhhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhc----C-----c
Q 007407 261 NSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLA----R-----P 331 (605)
Q Consensus 261 ~~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~----~-----~ 331 (605)
..+.|++++|..+|++..+.-++........|+++...|+.+.|..++...+..||+|...+..+.... . .
T Consensus 14 l~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~ 93 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDV 93 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccH
Confidence 367899999999999999989998888888999999999999999999999999999998776655443 1 1
Q ss_pred hhHHHHHHHHHhhCCCcHH-----------------HHHHHHHHHHhCCCcHHHHHHHHHhC-CHHHHHH---HHHHHHH
Q 007407 332 DEAKSVVAKGVRQIPKSAN-----------------KIRALRMALDEIPDSVRLWKALVEIS-SEEEARI---LLHRAVE 390 (605)
Q Consensus 332 ~~Ak~~l~~al~~~P~s~~-----------------a~~vl~kAle~~P~~~~lw~~l~~le-~~e~A~~---~l~rAl~ 390 (605)
.....+|.......|.+.. +...++..|.. .-+.+...+-.++ +.+.+.. ++...+.
T Consensus 94 ~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~K--gvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~ 171 (517)
T PF12569_consen 94 EKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRK--GVPSLFSNLKPLYKDPEKAAIIESLVEEYVN 171 (517)
T ss_pred HHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHcChhHHHHHHHHHHHHHH
Confidence 3445678777777887722 22223333322 1223344443343 2322221 2222221
Q ss_pred ---------------hCCCCHHHHHHH--HH----hhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHH
Q 007407 391 ---------------CCPLDVELWLAL--VR----LETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKII 448 (605)
Q Consensus 391 ---------------~~P~~~~lw~aL--a~----le~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~ 448 (605)
..|.+.-+|..+ ++ +++++.|...+++|+...|+.+++++..|++. ..|++.+|...+
T Consensus 172 ~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~ 251 (517)
T PF12569_consen 172 SLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAM 251 (517)
T ss_pred hhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 123344567533 44 34789999999999999999999999999988 999999999999
Q ss_pred HHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchh----hHHHHH--HHHHHHHHcCCHHHHHH
Q 007407 449 ERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEED----KKRTWV--ADVEECKKRGSIETARA 522 (605)
Q Consensus 449 ~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~----~~~~~~--~~a~~~~~~g~~~~A~~ 522 (605)
+.|-..... ++-+-.+.+..+.+.|.+++|..++..-...+.+... -.-.|+ ..|..+.+.|++..|..
T Consensus 252 ~~Ar~LD~~-----DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk 326 (517)
T PF12569_consen 252 DEARELDLA-----DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALK 326 (517)
T ss_pred HHHHhCChh-----hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 998776543 5666677888899999999999888766554321001 122455 56889999999999999
Q ss_pred HHHHHHHhcC
Q 007407 523 IFSPACTVFL 532 (605)
Q Consensus 523 i~~~al~~~P 532 (605)
-|..+.++|-
T Consensus 327 ~~~~v~k~f~ 336 (517)
T PF12569_consen 327 RFHAVLKHFD 336 (517)
T ss_pred HHHHHHHHHH
Confidence 9998888763
No 98
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=99.11 E-value=7.6e-10 Score=113.63 Aligned_cols=133 Identities=16% Similarity=0.219 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 007407 466 TWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKK-RGSIETARAIFSPACTVFLTKKNIWLKAAQL 544 (605)
Q Consensus 466 ~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~-~g~~~~A~~i~~~al~~~P~~~~~w~~la~l 544 (605)
+|+.+...+.+.+..+.|+.+|.+++...+. ...+|+..|.++.. .++...|+.||+.+++.+|.+..+|..++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~---~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRC---TYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS----THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4666666665555566666666666643333 45566666666555 3444446666666666666666666666666
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCC
Q 007407 545 EKSYGCRESLIALLRKAVTYCPQA---EVLWLMGAKEKWLAGDVPATRDILQEAYAAIPN 601 (605)
Q Consensus 545 ~~~~g~~e~A~~~lekAl~~~P~~---~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~ 601 (605)
+...|+.+.++.+|++++...|.. ..+|..|..++.+.|+.+..+++..++.+..|+
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 666666666666666666665533 246666666666666666666666666666655
No 99
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.09 E-value=1.7e-08 Score=100.60 Aligned_cols=167 Identities=11% Similarity=0.021 Sum_probs=101.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCH---HHHHHHHHh----hcHHHHHHHHHHHHHhCCCCHH---HHHHHHHHH-Hc------
Q 007407 376 SSEEEARILLHRAVECCPLDV---ELWLALVRL----ETYGVARSVLNKARKKLPKERA---IWIAAAKLE-AN------ 438 (605)
Q Consensus 376 e~~e~A~~~l~rAl~~~P~~~---~lw~aLa~l----e~~e~A~~vL~~al~~~p~~~~---iwi~~a~Le-~~------ 438 (605)
++++.|+..|++++...|.+. ..|+.++.. ++++.|...|+++++..|+++. .|...+... ..
T Consensus 47 ~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~ 126 (235)
T TIGR03302 47 GDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDR 126 (235)
T ss_pred CCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccC
Confidence 355666666666666666554 233333322 3556666666666666665544 344444433 32
Q ss_pred --CCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCC
Q 007407 439 --GNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGS 516 (605)
Q Consensus 439 --g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~ 516 (605)
|+...|.+.|++++...|. +...|......... ... .....+..+..+...|+
T Consensus 127 ~~~~~~~A~~~~~~~~~~~p~-----~~~~~~a~~~~~~~-----------~~~---------~~~~~~~~a~~~~~~g~ 181 (235)
T TIGR03302 127 DQTAAREAFEAFQELIRRYPN-----SEYAPDAKKRMDYL-----------RNR---------LAGKELYVARFYLKRGA 181 (235)
T ss_pred CHHHHHHHHHHHHHHHHHCCC-----ChhHHHHHHHHHHH-----------HHH---------HHHHHHHHHHHHHHcCC
Confidence 3444555555555544432 22222111110000 000 11123456788899999
Q ss_pred HHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 007407 517 IETARAIFSPACTVFLTK---KNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQ 567 (605)
Q Consensus 517 ~~~A~~i~~~al~~~P~~---~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~ 567 (605)
+.+|+..|+.++..+|+. ..+|+.++.++...|++++|..+++.....+|+
T Consensus 182 ~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 182 YVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred hHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 999999999999998874 589999999999999999999999988877764
No 100
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.09 E-value=1.2e-07 Score=98.22 Aligned_cols=268 Identities=14% Similarity=0.105 Sum_probs=183.4
Q ss_pred hhhhccHHHHHHHHHHHHHhCCCChHH-HHHHHHHH--HHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcCchhHHHH
Q 007407 261 NSELRDILKARKIVRAVTKNSPKKPLG-WIQAARLE--ELANEEAAARKLITKGCNMCPKNEDVWLEACRLARPDEAKSV 337 (605)
Q Consensus 261 ~~~~gd~~kAr~ll~~al~~~P~~~~~-wia~Arle--~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~~~~Ak~~ 337 (605)
+.+.||++.|..+|+-.-+.+.+...+ -..+..+. .--+++..|.++...++...--+.........+.- +
T Consensus 429 ~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f---~--- 502 (840)
T KOG2003|consen 429 LLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAF---A--- 502 (840)
T ss_pred HHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceee---e---
Confidence 456677777777776655544433221 11112222 22345677777777776665544433332222110 0
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHhCCCcHHHHHHH----HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhh----cHH
Q 007407 338 VAKGVRQIPKSANKIRALRMALDEIPDSVRLWKAL----VEISSEEEARILLHRAVECCPLDVELWLALVRLE----TYG 409 (605)
Q Consensus 338 l~~al~~~P~s~~a~~vl~kAle~~P~~~~lw~~l----~~le~~e~A~~~l~rAl~~~P~~~~lw~aLa~le----~~e 409 (605)
+.+-..+...|+.||.......+..... -.+++.++|+..|-+.-...-++++++..++.++ ++.
T Consensus 503 -------ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~a 575 (840)
T KOG2003|consen 503 -------NGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPA 575 (840)
T ss_pred -------cCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHH
Confidence 0000334455666665444333332221 2345778999998888888889999999888764 567
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007407 410 VARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIIT 488 (605)
Q Consensus 410 ~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~ 488 (605)
.|+++|-++....|++|.++..++.|+ +.|+...|.+++-.....+|-+ +..-.|+ +.++......+.+...++
T Consensus 576 qaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~n---ie~iewl--~ayyidtqf~ekai~y~e 650 (840)
T KOG2003|consen 576 QAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCN---IETIEWL--AAYYIDTQFSEKAINYFE 650 (840)
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcc---hHHHHHH--HHHHHhhHHHHHHHHHHH
Confidence 899999999999999999999999999 9999888888777777767653 2344576 456777778899999999
Q ss_pred HHHHhCCCchhhHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 007407 489 NTIEIGVDEEDKKRTWV-ADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGC 550 (605)
Q Consensus 489 ~al~~~p~~~~~~~~~~-~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~ 550 (605)
++--+.|+ ..-|. ..|.++.+.|+|..|..+|+..-+.||.+...+..|..+.-..|-
T Consensus 651 kaaliqp~----~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 651 KAALIQPN----QSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHhcCcc----HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 99888776 33454 456677789999999999999999999999999999988877764
No 101
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.06 E-value=5e-07 Score=99.64 Aligned_cols=298 Identities=15% Similarity=0.130 Sum_probs=209.0
Q ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcCchhHHHHHHHHHhhCCCcHHHHHHHHHHHHhCC
Q 007407 284 KPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLARPDEAKSVVAKGVRQIPKSANKIRALRMALDEIP 363 (605)
Q Consensus 284 ~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~~~~Ak~~l~~al~~~P~s~~a~~vl~kAle~~P 363 (605)
+.+..+..+.+....|++++|...++......++...+.-..+++... ......|..+|+..|..+|
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~k-------------Lg~~~eA~~~y~~Li~rNP 69 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLK-------------LGRKEEAEKIYRELIDRNP 69 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHHCC
Confidence 456677888899999999999999998887777666555444544311 1111334455566666666
Q ss_pred CcHHHHHHHHHhC---------CHHHHHHHHHHHHHhCCCCHHHH-HHHHHh--hcHH-HHHHHHHHHHHhCCCCHHHHH
Q 007407 364 DSVRLWKALVEIS---------SEEEARILLHRAVECCPLDVELW-LALVRL--ETYG-VARSVLNKARKKLPKERAIWI 430 (605)
Q Consensus 364 ~~~~lw~~l~~le---------~~e~A~~~l~rAl~~~P~~~~lw-~aLa~l--e~~e-~A~~vL~~al~~~p~~~~iwi 430 (605)
++..++..+...- ..+.-..+|...-+..|.+.-.. +.|.-+ +++. .+...+...+.. .-|.++.
T Consensus 70 dn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~K--gvPslF~ 147 (517)
T PF12569_consen 70 DNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRK--GVPSLFS 147 (517)
T ss_pred CcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhc--CCchHHH
Confidence 6666665553321 34666778888888888875443 223222 1232 344455555543 2344555
Q ss_pred HHHHHH-HcCCHHHHHHHHHHHHHHhccCcc----------cccHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 007407 431 AAAKLE-ANGNTSMVGKIIERGIRALQGEEV----------VIDRDTWM--KEAEVADRAGSVVTCVAIITNTIEIGVDE 497 (605)
Q Consensus 431 ~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~----------~~~~~~wl--~~A~~~e~~g~~~~A~~i~~~al~~~p~~ 497 (605)
.+-.|+ ......-+..++...+..+..++. ++..-+|. -.|+.+...|+++.|...+.++|...|.
T Consensus 148 ~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt- 226 (517)
T PF12569_consen 148 NLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT- 226 (517)
T ss_pred HHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-
Confidence 555565 333344455555555555432211 23445674 4589999999999999999999999998
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC-----HH
Q 007407 498 EDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYC--PQA-----EV 570 (605)
Q Consensus 498 ~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~--P~~-----~~ 570 (605)
....++..|.++...|++.+|...++.|-.+++.+--+=...+....+.|+.++|.+++..-.... |.. ..
T Consensus 227 --~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc 304 (517)
T PF12569_consen 227 --LVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQC 304 (517)
T ss_pred --cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999998776654 211 34
Q ss_pred HHHH--HHHHHHHcCChHHHHHHHHHHHHHC
Q 007407 571 LWLM--GAKEKWLAGDVPATRDILQEAYAAI 599 (605)
Q Consensus 571 l~l~--~a~~~~~~gd~~~Ar~il~kAl~~~ 599 (605)
+|+. .|..+.+.|++..|++-|....++.
T Consensus 305 ~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 305 MWFETECAEAYLRQGDYGLALKRFHAVLKHF 335 (517)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 6655 4668888999999999998877653
No 102
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.06 E-value=2.1e-08 Score=114.33 Aligned_cols=144 Identities=13% Similarity=0.055 Sum_probs=133.9
Q ss_pred HHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007407 415 LNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEI 493 (605)
Q Consensus 415 L~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~ 493 (605)
+......+|.++++++.+|.+. +.|.++++..+++++++..|+ ....+..++..+.+.+.+++|...+++++..
T Consensus 75 ~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-----~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~ 149 (694)
T PRK15179 75 LLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-----SSEAFILMLRGVKRQQGIEAGRAEIELYFSG 149 (694)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-----cHHHHHHHHHHHHHhccHHHHHHHHHHHhhc
Confidence 3444556889999999999988 999999999999999999887 5778999999999999999999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 007407 494 GVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCP 566 (605)
Q Consensus 494 ~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P 566 (605)
+|+ +....+..|..+...|++++|..+|++++..+|+...+|..+|.+++..|+.++|...|++|+....
T Consensus 150 ~p~---~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 150 GSS---SAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG 219 (694)
T ss_pred CCC---CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence 998 8999999999999999999999999999999999999999999999999999999999999999874
No 103
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.05 E-value=3.7e-09 Score=97.10 Aligned_cols=100 Identities=10% Similarity=-0.046 Sum_probs=90.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007407 500 KKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEK 579 (605)
Q Consensus 500 ~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~ 579 (605)
..+..+.++..+...|++++|..+|+-++.++|.+...|+.||.++...|++++|+..|.+|+.+.|+++..+...|.++
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 56667788888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHHHC
Q 007407 580 WLAGDVPATRDILQEAYAAI 599 (605)
Q Consensus 580 ~~~gd~~~Ar~il~kAl~~~ 599 (605)
...|+++.|++.|+.|+..+
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999999887
No 104
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.04 E-value=2.7e-07 Score=99.97 Aligned_cols=89 Identities=19% Similarity=0.125 Sum_probs=71.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q 007407 506 ADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDV 585 (605)
Q Consensus 506 ~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~ 585 (605)
..+.-+-..|+++.|...+..|+..-|+.+..+..-|.+..-.|.+++|...++.|.+.+-.+--+--.+|+...+++++
T Consensus 376 ~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i 455 (700)
T KOG1156|consen 376 FLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEI 455 (700)
T ss_pred HHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHcccc
Confidence 34666677888888888888888888888888888888888888888888888888888754444545678877788888
Q ss_pred HHHHHHHHH
Q 007407 586 PATRDILQE 594 (605)
Q Consensus 586 ~~Ar~il~k 594 (605)
++|.+++.+
T Consensus 456 ~eA~~~~sk 464 (700)
T KOG1156|consen 456 EEAEEVLSK 464 (700)
T ss_pred HHHHHHHHH
Confidence 888888765
No 105
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=99.03 E-value=1.3e-06 Score=92.44 Aligned_cols=98 Identities=16% Similarity=0.203 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcCchhHHHHHHHHHhhCC
Q 007407 267 ILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLARPDEAKSVVAKGVRQIP 346 (605)
Q Consensus 267 ~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~~~~Ak~~l~~al~~~P 346 (605)
.++-..+|.+++...|.++..|..++.++.+.+.+..-.+++.++|..+|+++++|+-+|..+-..+ -
T Consensus 87 ~~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n------------~ 154 (568)
T KOG2396|consen 87 PNRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEIN------------L 154 (568)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhc------------c
Confidence 3455678899999999999999999999999999999999999999999999999999887643211 1
Q ss_pred CcHHHHHHHHHHHHhCCCcHHHHHHHHHhC
Q 007407 347 KSANKIRALRMALDEIPDSVRLWKALVEIS 376 (605)
Q Consensus 347 ~s~~a~~vl~kAle~~P~~~~lw~~l~~le 376 (605)
+...++.++.++|..+|+++.+|+.+++++
T Consensus 155 ni~saRalflrgLR~npdsp~Lw~eyfrmE 184 (568)
T KOG2396|consen 155 NIESARALFLRGLRFNPDSPKLWKEYFRME 184 (568)
T ss_pred chHHHHHHHHHHhhcCCCChHHHHHHHHHH
Confidence 113355566667778888899999998876
No 106
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.03 E-value=3.7e-08 Score=96.60 Aligned_cols=175 Identities=17% Similarity=0.131 Sum_probs=128.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007407 411 ARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITN 489 (605)
Q Consensus 411 A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~ 489 (605)
+...+-......|.+.++ ..++... ..|+-+....++.++....++ +..+...++......|++..|...+++
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~-----d~~ll~~~gk~~~~~g~~~~A~~~~rk 125 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPK-----DRELLAAQGKNQIRNGNFGEAVSVLRK 125 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcc-----cHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 444555556667777777 5555433 666666666666665544433 344554567777778888888888888
Q ss_pred HHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 007407 490 TIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAE 569 (605)
Q Consensus 490 al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~ 569 (605)
+....|+ +..+|..++-.|.+.|+++.|+.-|.++++++|+++.+...++..+.-.|+++.|..++..+...-+.+.
T Consensus 126 A~~l~p~---d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~ 202 (257)
T COG5010 126 AARLAPT---DWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADS 202 (257)
T ss_pred HhccCCC---ChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCch
Confidence 8888777 7788888888888888888888888888888888888888888888888888888888888887777677
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHH
Q 007407 570 VLWLMGAKEKWLAGDVPATRDILQE 594 (605)
Q Consensus 570 ~l~l~~a~~~~~~gd~~~Ar~il~k 594 (605)
.+-..++...-..|+++.|+.+-.+
T Consensus 203 ~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 203 RVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHHHHHhhcCChHHHHhhccc
Confidence 7777777777678888888776543
No 107
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.01 E-value=1.2e-08 Score=99.34 Aligned_cols=122 Identities=11% Similarity=0.065 Sum_probs=105.5
Q ss_pred CCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH-HHHcCC-
Q 007407 439 GNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEE-CKKRGS- 516 (605)
Q Consensus 439 g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~-~~~~g~- 516 (605)
++.+++...++++++..|. +.+.|...+..+...|++++|...|++++..+|+ +..+|..+|.. +...|+
T Consensus 53 ~~~~~~i~~l~~~L~~~P~-----~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~---~~~~~~~lA~aL~~~~g~~ 124 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQ-----NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE---NAELYAALATVLYYQAGQH 124 (198)
T ss_pred hhHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCCC
Confidence 3456677778888887765 5678888888888899999999999999999988 88889998885 466676
Q ss_pred -HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 007407 517 -IETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQA 568 (605)
Q Consensus 517 -~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~ 568 (605)
.++|+.+|+++++.+|++..+++.+|..+...|++++|+..|+++++..|.+
T Consensus 125 ~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 125 MTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred CcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 5999999999999999999999999999999999999999999999998754
No 108
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.01 E-value=3e-06 Score=87.50 Aligned_cols=284 Identities=16% Similarity=0.122 Sum_probs=177.4
Q ss_pred hhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCH-HHHHHHHhhcCchhHHHHHHH
Q 007407 262 SELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNE-DVWLEACRLARPDEAKSVVAK 340 (605)
Q Consensus 262 ~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~-~lwle~a~L~~~~~Ak~~l~~ 340 (605)
...||+.+|..++.+.-+..+...-.++-.|+..-..|+++.|-.++.++.+.-+++. -+.+..+++
T Consensus 95 l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarl------------ 162 (400)
T COG3071 95 LFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARL------------ 162 (400)
T ss_pred HhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHH------------
Confidence 4456666666666665555555555555566666566666666666665555432221 111111111
Q ss_pred HHhhCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH----HhhcHHHHHHHHH
Q 007407 341 GVRQIPKSANKIRALRMALDEIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALV----RLETYGVARSVLN 416 (605)
Q Consensus 341 al~~~P~s~~a~~vl~kAle~~P~~~~lw~~l~~le~~e~A~~~l~rAl~~~P~~~~lw~aLa----~le~~e~A~~vL~ 416 (605)
+++-.++..|+.-+..+++..|.++.+..... +++.+.....++.
T Consensus 163 -------------------------------ll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~ 211 (400)
T COG3071 163 -------------------------------LLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILP 211 (400)
T ss_pred -------------------------------HHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHH
Confidence 12223445555556666666666655544322 2334555555555
Q ss_pred HHHHhCCC-CHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007407 417 KARKKLPK-ERA-------IWIAAAKLEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIIT 488 (605)
Q Consensus 417 ~al~~~p~-~~~-------iwi~~a~Le~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~ 488 (605)
+..+..-- +.+ +|..+ |.+..+...+.. +....+..|..- ..+.++-..+|..+...|..++|..+++
T Consensus 212 ~L~ka~~l~~~e~~~le~~a~~gl--L~q~~~~~~~~g-L~~~W~~~pr~l-r~~p~l~~~~a~~li~l~~~~~A~~~i~ 287 (400)
T COG3071 212 KLRKAGLLSDEEAARLEQQAWEGL--LQQARDDNGSEG-LKTWWKNQPRKL-RNDPELVVAYAERLIRLGDHDEAQEIIE 287 (400)
T ss_pred HHHHccCCChHHHHHHHHHHHHHH--HHHHhccccchH-HHHHHHhccHHh-hcChhHHHHHHHHHHHcCChHHHHHHHH
Confidence 54444321 111 12211 111111111111 333444444321 1245677788899999999999999999
Q ss_pred HHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 007407 489 NTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQA 568 (605)
Q Consensus 489 ~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~ 568 (605)
.+++..-+ + + ...++ -...-++...-....++.++..|+++.+|..||+++.+++.+.+|...|+.|+..-|.
T Consensus 288 ~~Lk~~~D-~-~---L~~~~-~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s- 360 (400)
T COG3071 288 DALKRQWD-P-R---LCRLI-PRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS- 360 (400)
T ss_pred HHHHhccC-h-h---HHHHH-hhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-
Confidence 99987544 1 2 22222 2456778889999999999999999999999999999999999999999999999874
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHC
Q 007407 569 EVLWLMGAKEKWLAGDVPATRDILQEAYAAI 599 (605)
Q Consensus 569 ~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~ 599 (605)
..-|.++|..+-+.|+...|.++.+.++-..
T Consensus 361 ~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 361 ASDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 5667899999999999999999999999653
No 109
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.99 E-value=1.5e-08 Score=91.78 Aligned_cols=120 Identities=13% Similarity=0.091 Sum_probs=105.7
Q ss_pred HHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007407 446 KIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFS 525 (605)
Q Consensus 446 ~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~ 525 (605)
..|++++...|. +......++..+...|+++.|...++.++..+|. +...|...+.++...|++++|..+|.
T Consensus 4 ~~~~~~l~~~p~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~ 75 (135)
T TIGR02552 4 ATLKDLLGLDSE-----QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY---NSRYWLGLAACCQMLKEYEEAIDAYA 75 (135)
T ss_pred hhHHHHHcCChh-----hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777776655 3455677788888899999999999999999888 88999999999999999999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 007407 526 PACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWL 573 (605)
Q Consensus 526 ~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l 573 (605)
+++..+|.+..+|+.+|.++...|+++.|...|+++++.+|++...+.
T Consensus 76 ~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 123 (135)
T TIGR02552 76 LAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSE 123 (135)
T ss_pred HHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 999999999999999999999999999999999999999998876543
No 110
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.97 E-value=7.1e-07 Score=97.56 Aligned_cols=250 Identities=14% Similarity=0.104 Sum_probs=167.9
Q ss_pred hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcCchhHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 007407 280 NSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLARPDEAKSVVAKGVRQIPKSANKIRALRMAL 359 (605)
Q Consensus 280 ~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~~~~Ak~~l~~al~~~P~s~~a~~vl~kAl 359 (605)
..|.-......++..+...|+++.|..++.++++.- .+.|- +... ++...+
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l---~k~~G----~~hl----------------------~va~~l 244 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRIL---EKTSG----LKHL----------------------VVASML 244 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH---HHccC----ccCH----------------------HHHHHH
Confidence 456666666678999999999999999999999871 00000 0000 000011
Q ss_pred HhCCCcHHHHHHHHHhCCHHHHHHHHHHHHHhC-----CCCHHH---HHHHHHh----hcHHHHHHHHHHHHHhCC----
Q 007407 360 DEIPDSVRLWKALVEISSEEEARILLHRAVECC-----PLDVEL---WLALVRL----ETYGVARSVLNKARKKLP---- 423 (605)
Q Consensus 360 e~~P~~~~lw~~l~~le~~e~A~~~l~rAl~~~-----P~~~~l---w~aLa~l----e~~e~A~~vL~~al~~~p---- 423 (605)
. .+-..+..+.++.+|..+|++|+... ++++.+ +..|+.+ +.+.+|...+++|++...
T Consensus 245 ~------~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~ 318 (508)
T KOG1840|consen 245 N------ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLG 318 (508)
T ss_pred H------HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhc
Confidence 1 12233455567888888888888652 444443 3333322 357777777777766542
Q ss_pred -CCHHH---HHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcc---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 007407 424 -KERAI---WIAAAKLE-ANGNTSMVGKIIERGIRALQGEEV---VIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGV 495 (605)
Q Consensus 424 -~~~~i---wi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~---~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p 495 (605)
..+++ +..++.+. ..+.++.+..+++++++.+.+.-- +........+|..+...|.+.+|..+++++|...-
T Consensus 319 ~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~ 398 (508)
T KOG1840|consen 319 ASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILR 398 (508)
T ss_pred cChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 23333 44455555 778899999999999888752111 12345677889999999999999999999998631
Q ss_pred C-----chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007407 496 D-----EEDKKRTWVADVEECKKRGSIETARAIFSPACTV-------FLTKKNIWLKAAQLEKSYGCRESLIALLRKAVT 563 (605)
Q Consensus 496 ~-----~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~-------~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~ 563 (605)
+ ...-......+|..+.+.+.+.+|..+|.++..+ .|+-...+..|+.+|...|+++.|.++.++++.
T Consensus 399 ~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 399 ELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 1 1112233456777888999999888888877765 355567888999999999999999999999985
Q ss_pred h
Q 007407 564 Y 564 (605)
Q Consensus 564 ~ 564 (605)
.
T Consensus 479 ~ 479 (508)
T KOG1840|consen 479 A 479 (508)
T ss_pred H
Confidence 4
No 111
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.95 E-value=1.2e-08 Score=104.86 Aligned_cols=138 Identities=20% Similarity=0.274 Sum_probs=68.2
Q ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCchhhHHHHH
Q 007407 428 IWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRA-GSVVTCVAIITNTIEIGVDEEDKKRTWV 505 (605)
Q Consensus 428 iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~-g~~~~A~~i~~~al~~~p~~~~~~~~~~ 505 (605)
+|+.+.+.. +.+..+.++++|.+|.+.. .....+|...|...... ++.+.|..||+.+++..|. +..+|+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-----~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~---~~~~~~ 74 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-----RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS---DPDFWL 74 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT----HHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC---CHHHHH
Confidence 344444433 3333444555555554211 11334455444443332 2333355555555555444 455555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 007407 506 ADVEECKKRGSIETARAIFSPACTVFLTKK---NIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWL 573 (605)
Q Consensus 506 ~~a~~~~~~g~~~~A~~i~~~al~~~P~~~---~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l 573 (605)
.++.+++..|+.+.||.+|++++...|... .+|..+..++.++|+.+.+.++++++.+.+|....++.
T Consensus 75 ~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~ 145 (280)
T PF05843_consen 75 EYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLEL 145 (280)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHH
Confidence 555555555555555555555555544432 56666666666666666666666666666665544433
No 112
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=98.92 E-value=1.6e-06 Score=90.41 Aligned_cols=331 Identities=14% Similarity=0.155 Sum_probs=179.7
Q ss_pred ccchhhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhh----cCc--
Q 007407 258 ITTNSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRL----ARP-- 331 (605)
Q Consensus 258 ~~~~~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L----~~~-- 331 (605)
++++...|..++-|..+++.....|--+.+|.....-|..-+++.....++.+++..- -+.++|..++.. +..
T Consensus 49 iq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~-l~ldLW~lYl~YIRr~n~~~t 127 (660)
T COG5107 49 IQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS-LNLDLWMLYLEYIRRVNNLIT 127 (660)
T ss_pred HHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh-ccHhHHHHHHHHHHhhCcccc
Confidence 4556788899999999999999999999999988888878889999999999887753 568888665432 211
Q ss_pred hhHHHHHHHHHh-------hCCCc--------------------------HHHHHHHHHHHHhCCCc-HHHHHHHHHhC-
Q 007407 332 DEAKSVVAKGVR-------QIPKS--------------------------ANKIRALRMALDEIPDS-VRLWKALVEIS- 376 (605)
Q Consensus 332 ~~Ak~~l~~al~-------~~P~s--------------------------~~a~~vl~kAle~~P~~-~~lw~~l~~le- 376 (605)
-+++..+-+|.+ +.|.| +..++.|++||..--++ .++|+.+-+++
T Consensus 128 Gq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nleklW~dy~~fE~ 207 (660)
T COG5107 128 GQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLEKLWKDYENFEL 207 (660)
T ss_pred cchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHHHHHHHHHHHHH
Confidence 134433333333 34555 34566788887644344 46888764443
Q ss_pred ----------------CHHHHHHHHHHHHHh-------CCC-----------CHHHHHHHHHhhc-----------HHHH
Q 007407 377 ----------------SEEEARILLHRAVEC-------CPL-----------DVELWLALVRLET-----------YGVA 411 (605)
Q Consensus 377 ----------------~~e~A~~~l~rAl~~-------~P~-----------~~~lw~aLa~le~-----------~e~A 411 (605)
-+-.|+..|+..... .|. +-.-|+.+++.+. ....
T Consensus 208 e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi 287 (660)
T COG5107 208 ELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRI 287 (660)
T ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHH
Confidence 123455555554322 111 1223666665542 1234
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHc-------CCHHHH
Q 007407 412 RSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRA-------GSVVTC 483 (605)
Q Consensus 412 ~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~-------g~~~~A 483 (605)
--+++.++..+|-.+++|+.+..+- ..++-.+|.+...+++...|. ..+.+++.++.. |.++.|
T Consensus 288 ~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps--------L~~~lse~yel~nd~e~v~~~fdk~ 359 (660)
T COG5107 288 HYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS--------LTMFLSEYYELVNDEEAVYGCFDKC 359 (660)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc--------hheeHHHHHhhcccHHHHhhhHHHH
Confidence 4467777777777777777776544 555666666666666554443 122223333222 222333
Q ss_pred HHHHHHHHHhC-----------CCc-h--------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 007407 484 VAIITNTIEIG-----------VDE-E--------DKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQ 543 (605)
Q Consensus 484 ~~i~~~al~~~-----------p~~-~--------~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~ 543 (605)
.+-+.+-++.. |+. + ...-+|+-......+..-++.||.+|-++-+.---...++..-|.
T Consensus 360 ~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~ 439 (660)
T COG5107 360 TQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAF 439 (660)
T ss_pred HHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHH
Confidence 22222211110 000 0 000122223333333334555555555554332123344444444
Q ss_pred HHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 007407 544 LEKS-YGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYA 597 (605)
Q Consensus 544 l~~~-~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~ 597 (605)
++.. .|++.-|..+|+-++.++|+++..-..|-.++...++-+.|+.+|++++.
T Consensus 440 ~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~ 494 (660)
T COG5107 440 IEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVE 494 (660)
T ss_pred HHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHH
Confidence 4433 34555555555555555555555544454445455555555555555543
No 113
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.92 E-value=1.2e-08 Score=108.44 Aligned_cols=113 Identities=13% Similarity=0.061 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 007407 466 TWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLE 545 (605)
Q Consensus 466 ~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~ 545 (605)
.+...|..+...|++..|...|+++|..+|. +..+|+.++..+...|++++|+..|++++.++|++..+|+.+|.++
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~---~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~ 80 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPN---NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTAC 80 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 3677888889999999999999999999998 7889999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 007407 546 KSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWL 581 (605)
Q Consensus 546 ~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~ 581 (605)
...|++++|+..|++|+..+|+++.+...++++..+
T Consensus 81 ~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 81 MKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999998887777776543
No 114
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.92 E-value=1.4e-08 Score=101.21 Aligned_cols=117 Identities=15% Similarity=0.044 Sum_probs=103.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 007407 467 WMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEK 546 (605)
Q Consensus 467 wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~ 546 (605)
....+..+.+.+++.+|+..|.+||.++|. +.-+|..+|..|.+.|.++.|+.-++.||.++|++..+|.++|.++.
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~---nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPT---NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCC---cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 344555666777899999999999999998 88889999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 007407 547 SYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVP 586 (605)
Q Consensus 547 ~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~ 586 (605)
..|++++|++.|++||.++|+++..|-.+.....+.+...
T Consensus 161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999988888777666555444
No 115
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.91 E-value=3.3e-08 Score=86.87 Aligned_cols=102 Identities=15% Similarity=0.074 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 007407 502 RTWVADVEECKKRGSIETARAIFSPACTVFLTK---KNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQA---EVLWLMG 575 (605)
Q Consensus 502 ~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~---~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~---~~l~l~~ 575 (605)
.+++..+..+...|++++|...|..++..+|++ ..+++.+|.++...|+++.|..+|++++..+|++ +.+|+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 467788888888999999999999999888876 5688888999999999999999999999888875 5678888
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCC
Q 007407 576 AKEKWLAGDVPATRDILQEAYAAIPNSE 603 (605)
Q Consensus 576 a~~~~~~gd~~~Ar~il~kAl~~~P~~~ 603 (605)
|.++.+.|++++|...|.++++..|++.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCCh
Confidence 8888889999999999999999998875
No 116
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.91 E-value=1.8e-08 Score=82.61 Aligned_cols=99 Identities=14% Similarity=0.092 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 007407 503 TWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLA 582 (605)
Q Consensus 503 ~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~ 582 (605)
+|+..+..+...|++++|...|+++++..|.+..+|..++.++...|+++.|.++|++++...|.+..+|..++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 46778888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHCCC
Q 007407 583 GDVPATRDILQEAYAAIPN 601 (605)
Q Consensus 583 gd~~~Ar~il~kAl~~~P~ 601 (605)
|+++.|..++.++++.+|+
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999999998884
No 117
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=7e-08 Score=99.53 Aligned_cols=247 Identities=12% Similarity=0.026 Sum_probs=177.3
Q ss_pred HHHHHHHHHHHhCCCcHHHHHH----HHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh----hcHHHHHHHHH-----
Q 007407 350 NKIRALRMALDEIPDSVRLWKA----LVEISSEEEARILLHRAVECCPLDVELWLALVRL----ETYGVARSVLN----- 416 (605)
Q Consensus 350 ~a~~vl~kAle~~P~~~~lw~~----l~~le~~e~A~~~l~rAl~~~P~~~~lw~aLa~l----e~~e~A~~vL~----- 416 (605)
++...|..|++..|++..+|.. +..+.++++|.--.+..+...|..........+. .....|...|+
T Consensus 67 nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~ 146 (486)
T KOG0550|consen 67 NALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLKSKQAY 146 (486)
T ss_pred HHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhhhhhhh
Confidence 4556788888899998888853 2345577888888888888877655433222211 11111111111
Q ss_pred -------HHHHhCCCC---H---HHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHH
Q 007407 417 -------KARKKLPKE---R---AIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVT 482 (605)
Q Consensus 417 -------~al~~~p~~---~---~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~ 482 (605)
..-+..|.+ | ..-+.-+.+. -.|+.+.+.++--..++..+. +.......+..+...++.+.
T Consensus 147 ~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~-----n~~al~vrg~~~yy~~~~~k 221 (486)
T KOG0550|consen 147 KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT-----NAEALYVRGLCLYYNDNADK 221 (486)
T ss_pred HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc-----hhHHHHhcccccccccchHH
Confidence 111111221 1 1112223444 667777777766666665443 34445555555566778899
Q ss_pred HHHHHHHHHHhCCCc---------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHcC
Q 007407 483 CVAIITNTIEIGVDE---------EDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTK----KNIWLKAAQLEKSYG 549 (605)
Q Consensus 483 A~~i~~~al~~~p~~---------~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~----~~~w~~la~l~~~~g 549 (605)
+...+++++..+|+. +.....|-..+.-..+.|++..|..+|.++|.++|++ ..+|..++.+..++|
T Consensus 222 a~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLg 301 (486)
T KOG0550|consen 222 AINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLG 301 (486)
T ss_pred HHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccC
Confidence 999999999999984 3356678888999999999999999999999999985 466778889999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCC
Q 007407 550 CRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPN 601 (605)
Q Consensus 550 ~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~ 601 (605)
+..+|+...+.|+.++|..-..++..|.++...+++++|.+-|++|++...+
T Consensus 302 rl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 302 RLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred CchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999999999999999999999997654
No 118
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.90 E-value=1.6e-06 Score=96.39 Aligned_cols=342 Identities=17% Similarity=0.202 Sum_probs=187.6
Q ss_pred cccCchhHHhhhhhhcccchhhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHH---HhcCHHHHHHHHHHHHhhCCCC
Q 007407 242 TVFDPSGYLTRMNDLKITTNSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEE---LANEEAAARKLITKGCNMCPKN 318 (605)
Q Consensus 242 ~~~dp~~yl~~L~~~~~~~~~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~---~~g~~~~Ar~ll~~~l~~~P~~ 318 (605)
..+++..|...+..+.+ ....|++.+-+..-..+....|.++..|+.++.-+. ..+....+..+++++|-.. .+
T Consensus 106 ~ai~~y~~~~~v~Li~l--lrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy-~~ 182 (881)
T KOG0128|consen 106 LAINSYKYAQMVQLIGL--LRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDY-NS 182 (881)
T ss_pred hcccccchHHHHHHHHH--HHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccc-cc
Confidence 44666777666654333 357788888888878888889999999999987764 2467788889999998754 78
Q ss_pred HHHHHHHHhhcC-----------chhHHHHHHHHHhhCCCc----H--------------------HHHHHHH-------
Q 007407 319 EDVWLEACRLAR-----------PDEAKSVVAKGVRQIPKS----A--------------------NKIRALR------- 356 (605)
Q Consensus 319 ~~lwle~a~L~~-----------~~~Ak~~l~~al~~~P~s----~--------------------~a~~vl~------- 356 (605)
+.+|.+++.+.. .+.++.++.+++...... . +-...+.
T Consensus 183 v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~~ 262 (881)
T KOG0128|consen 183 VPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQPL 262 (881)
T ss_pred chHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccc
Confidence 899999886521 135666777776533221 0 0011111
Q ss_pred ----------------------------------------HHHHhCCCcHHHHHHHHHhC----CHHHHHHHHHHHHHhC
Q 007407 357 ----------------------------------------MALDEIPDSVRLWKALVEIS----SEEEARILLHRAVECC 392 (605)
Q Consensus 357 ----------------------------------------kAle~~P~~~~lw~~l~~le----~~e~A~~~l~rAl~~~ 392 (605)
+.++..|.-...|..+++.+ .+---..+++|++...
T Consensus 263 D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~ 342 (881)
T KOG0128|consen 263 DEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEM 342 (881)
T ss_pred hhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhc
Confidence 11222222223333333332 1112222344444444
Q ss_pred CCCHHHHHHHHHhh-----cHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCC-HHHHHHHHHHHHHHhccCcccccHH
Q 007407 393 PLDVELWLALVRLE-----TYGVARSVLNKARKKLPKERAIWIAAA-KLEANGN-TSMVGKIIERGIRALQGEEVVIDRD 465 (605)
Q Consensus 393 P~~~~lw~aLa~le-----~~e~A~~vL~~al~~~p~~~~iwi~~a-~Le~~g~-~~~a~~i~~~al~~~p~~~~~~~~~ 465 (605)
+.+.++|+.+..+. -...+..++.+++..+|....+|-.+- .+++.+. ...+...+.+++.. ...
T Consensus 343 ~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~--------~~~ 414 (881)
T KOG0128|consen 343 VLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSM--------TVE 414 (881)
T ss_pred cccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHH--------HHH
Confidence 44455555443321 123344445555555555544444433 1222221 22233333333322 011
Q ss_pred HHHHHHHHHHHcCC------HHHHHHHHHHHHHhC---CCc--hhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhcCC
Q 007407 466 TWMKEAEVADRAGS------VVTCVAIITNTIEIG---VDE--EDKKRTWVADVEECKK-RGSIETARAIFSPACTVFLT 533 (605)
Q Consensus 466 ~wl~~A~~~e~~g~------~~~A~~i~~~al~~~---p~~--~~~~~~~~~~a~~~~~-~g~~~~A~~i~~~al~~~P~ 533 (605)
++..+.......++ +..-++.|+.+...- ..+ .....++..+|..+.. .++++++|.++...+...-.
T Consensus 415 l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~ 494 (881)
T KOG0128|consen 415 LHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGG 494 (881)
T ss_pred HHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcc
Confidence 12222222222222 122223333332210 000 0133444455665544 67899999999988887666
Q ss_pred CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC-HHHHHHHHHHHHHcCChHHHHHHHHH
Q 007407 534 KKN-IWLKAAQLEKSYGCRESLIALLRKAVTYC--PQA-EVLWLMGAKEKWLAGDVPATRDILQE 594 (605)
Q Consensus 534 ~~~-~w~~la~l~~~~g~~e~A~~~lekAl~~~--P~~-~~l~l~~a~~~~~~gd~~~Ar~il~k 594 (605)
+.. .|+.+.+++..+|+...++.++++|+... |++ ..++..+-+++...|.++.......+
T Consensus 495 ~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~~~~~ 559 (881)
T KOG0128|consen 495 SIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLESFDLCPEK 559 (881)
T ss_pred hHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHHHhhhHHh
Confidence 666 89999999999999999999999888764 432 44556666677678888776655544
No 119
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.88 E-value=1.3e-07 Score=108.88 Aligned_cols=216 Identities=11% Similarity=0.004 Sum_probs=133.9
Q ss_pred hCCCcHHHHHHHHHhC----CHHHHHHHHHHHHHhCCCCHHHHHHHHHhh----cHHHHHHHHHHHHHhCCCCHHHHHHH
Q 007407 361 EIPDSVRLWKALVEIS----SEEEARILLHRAVECCPLDVELWLALVRLE----TYGVARSVLNKARKKLPKERAIWIAA 432 (605)
Q Consensus 361 ~~P~~~~lw~~l~~le----~~e~A~~~l~rAl~~~P~~~~lw~aLa~le----~~e~A~~vL~~al~~~p~~~~iwi~~ 432 (605)
..|.+...|..++... ++++|+.++..+++..|++..+|+.++-+. .+.++.-+ .++...+.
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~-------- 95 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQ-------- 95 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccc--------
Confidence 4466666666665433 556666666666666666666666555432 12222211 22222221
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHH
Q 007407 433 AKLEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECK 512 (605)
Q Consensus 433 a~Le~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~ 512 (605)
..+. .+...+-..+...+. +......+|..|.+.|..++|.++|++++.++|+ +..+...+|..+.
T Consensus 96 -----~~~~-~~ve~~~~~i~~~~~-----~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~---n~~aLNn~AY~~a 161 (906)
T PRK14720 96 -----NLKW-AIVEHICDKILLYGE-----NKLALRTLAEAYAKLNENKKLKGVWERLVKADRD---NPEIVKKLATSYE 161 (906)
T ss_pred -----ccch-hHHHHHHHHHHhhhh-----hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc---cHHHHHHHHHHHH
Confidence 1122 222333333333332 3457788899999999999999999999999988 8888888998888
Q ss_pred HcCCHHHHHHHHHHHHHhcCC---C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCC
Q 007407 513 KRGSIETARAIFSPACTVFLT---K---KNIWLKAAQLEKSYGCRESLIALLRKAVTYCP--QAEVLWLMGAKEKWLAGD 584 (605)
Q Consensus 513 ~~g~~~~A~~i~~~al~~~P~---~---~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P--~~~~l~l~~a~~~~~~gd 584 (605)
.. ++++|+.++.+|+..+=+ + ..+|..+ ++....+.+....+.++.+...- ....+|..+-..|...++
T Consensus 162 e~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~--~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~ 238 (906)
T PRK14720 162 EE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKL--VHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALED 238 (906)
T ss_pred Hh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHH--HhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhh
Confidence 88 999999999999887321 1 1223332 12223334444444444444321 223445555556667899
Q ss_pred hHHHHHHHHHHHHHCCCCC
Q 007407 585 VPATRDILQEAYAAIPNSE 603 (605)
Q Consensus 585 ~~~Ar~il~kAl~~~P~~~ 603 (605)
++++..+|..+++..|+|-
T Consensus 239 ~~~~i~iLK~iL~~~~~n~ 257 (906)
T PRK14720 239 WDEVIYILKKILEHDNKNN 257 (906)
T ss_pred hhHHHHHHHHHHhcCCcch
Confidence 9999999999999999874
No 120
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.87 E-value=1.3e-08 Score=101.53 Aligned_cols=101 Identities=13% Similarity=0.056 Sum_probs=94.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 007407 504 WVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAG 583 (605)
Q Consensus 504 ~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~g 583 (605)
+-..+.-+...++|.+|+..|.+||+++|+++.+|-..|.+|.+.|.++.|++-.+.||.++|.+...|..+|..+...|
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccC
Confidence 33445667788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHCCCCCC
Q 007407 584 DVPATRDILQEAYAAIPNSEE 604 (605)
Q Consensus 584 d~~~Ar~il~kAl~~~P~~~~ 604 (605)
++++|...|.+|++++|+|+.
T Consensus 164 k~~~A~~aykKaLeldP~Ne~ 184 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNES 184 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHH
Confidence 999999999999999999863
No 121
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.85 E-value=6.9e-08 Score=102.60 Aligned_cols=101 Identities=13% Similarity=0.133 Sum_probs=88.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 007407 504 WVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAG 583 (605)
Q Consensus 504 ~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~g 583 (605)
+...|..+...|++++|+.+|.++++.+|++..+|+.+|.++...|++++|+..+++|+.++|+++.+|+.+|.++...|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 44567777888899999999999999999999999999999999999999999999999999988888999998888899
Q ss_pred ChHHHHHHHHHHHHHCCCCCC
Q 007407 584 DVPATRDILQEAYAAIPNSEE 604 (605)
Q Consensus 584 d~~~Ar~il~kAl~~~P~~~~ 604 (605)
++++|...|++|++++|+++.
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~ 105 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSR 105 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHH
Confidence 999999999999999988754
No 122
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=1.3e-05 Score=86.40 Aligned_cols=320 Identities=18% Similarity=0.152 Sum_probs=196.0
Q ss_pred hhHHhhhhhhcccchhhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 007407 247 SGYLTRMNDLKITTNSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEAC 326 (605)
Q Consensus 247 ~~yl~~L~~~~~~~~~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a 326 (605)
...+++|+. ....|++.+|.+...+++...|+...+...-.-.....++|+.|..+++.=....-.+. ..++.+
T Consensus 13 ~~l~t~ln~-----~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~-~~fEKA 86 (652)
T KOG2376|consen 13 EALLTDLNR-----HGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS-FFFEKA 86 (652)
T ss_pred HHHHHHHHH-----hccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch-hhHHHH
Confidence 345566653 46778999999999999999999998776665556778899999977765322111111 113333
Q ss_pred ----hhcCchhHHHHHHHHHhhCCCcHHHHHHHHHHHHhCCCcHHHH----HHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Q 007407 327 ----RLARPDEAKSVVAKGVRQIPKSANKIRALRMALDEIPDSVRLW----KALVEISSEEEARILLHRAVECCPLDVEL 398 (605)
Q Consensus 327 ----~L~~~~~Ak~~l~~al~~~P~s~~a~~vl~kAle~~P~~~~lw----~~l~~le~~e~A~~~l~rAl~~~P~~~~l 398 (605)
+++..++|...+. .+ .+.+..+. ..+..++++++|..+|+..++..-++.+.
T Consensus 87 Yc~Yrlnk~Dealk~~~-~~-------------------~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~ 146 (652)
T KOG2376|consen 87 YCEYRLNKLDEALKTLK-GL-------------------DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDE 146 (652)
T ss_pred HHHHHcccHHHHHHHHh-cc-------------------cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHH
Confidence 4555566655443 11 11112111 12356779999999999998877665544
Q ss_pred HHHHHHhhcHHHHHHH-HHHHHHhCCC-CHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccC------c---cc-ccHH
Q 007407 399 WLALVRLETYGVARSV-LNKARKKLPK-ERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGE------E---VV-IDRD 465 (605)
Q Consensus 399 w~aLa~le~~e~A~~v-L~~al~~~p~-~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~------~---~~-~~~~ 465 (605)
-.....+. ...+..+ +.+.+...|. +.+..++.+-.+ ..|++.+|++++++++..+... + +. .-..
T Consensus 147 ~~r~nl~a-~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~ 225 (652)
T KOG2376|consen 147 ERRANLLA-VAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNP 225 (652)
T ss_pred HHHHHHHH-HHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHH
Confidence 33221111 1111111 2333444444 567777766544 8899999999999995554321 0 00 0112
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch--------------------h--------------------------
Q 007407 466 TWMKEAEVADRAGSVVTCVAIITNTIEIGVDEE--------------------D-------------------------- 499 (605)
Q Consensus 466 ~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~--------------------~-------------------------- 499 (605)
+..++|-.+...|..++|.+||..+|..+|.++ +
T Consensus 226 IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~q 305 (652)
T KOG2376|consen 226 IRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQ 305 (652)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 445667777889999999999999888765420 0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHH
Q 007407 500 KKRTWVADVEECKKRGSIETARAIFSPACTVFLTK-KNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQA-EVLWLMGAK 577 (605)
Q Consensus 500 ~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~-~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~-~~l~l~~a~ 577 (605)
...++.+.+.+..-.+..+.++.+....-..+|.. ..+...-+...... .+..+.+++......+|.+ ..+.+..+.
T Consensus 306 k~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~-~~~ka~e~L~~~~~~~p~~s~~v~L~~aQ 384 (652)
T KOG2376|consen 306 KQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREK-KHKKAIELLLQFADGHPEKSKVVLLLRAQ 384 (652)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHH-HHhhhHHHHHHHhccCCchhHHHHHHHHH
Confidence 01122223333333444455555555444445543 23333333333333 6778999999999999976 667888899
Q ss_pred HHHHcCChHHHHHHHHH
Q 007407 578 EKWLAGDVPATRDILQE 594 (605)
Q Consensus 578 ~~~~~gd~~~Ar~il~k 594 (605)
+...+|+++.|.++|..
T Consensus 385 l~is~gn~~~A~~il~~ 401 (652)
T KOG2376|consen 385 LKISQGNPEVALEILSL 401 (652)
T ss_pred HHHhcCCHHHHHHHHHH
Confidence 99999999999999993
No 123
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.81 E-value=1.5e-07 Score=99.29 Aligned_cols=130 Identities=15% Similarity=0.019 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 007407 464 RDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQ 543 (605)
Q Consensus 464 ~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~ 543 (605)
...|.-.|......|.++.|+..+...+...|+ |..+|...++++...|+..+|.+.+++++..+|+...+|+.+|+
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~---N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAAQPD---NPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 344555555555555555555555555555555 55555555555556666666666666666666666556666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 007407 544 LEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAY 596 (605)
Q Consensus 544 l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl 596 (605)
.+.+.|++.+|+..+++.+..+|+++..|..+|+.+-..|+..+|...+.+++
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 66666666666666666665556666666655555555555555554444443
No 124
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.78 E-value=1.7e-06 Score=99.91 Aligned_cols=238 Identities=9% Similarity=-0.063 Sum_probs=166.0
Q ss_pred HhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcCc-hhHHHHHHHHHhhCCCcHHHHHHHHH
Q 007407 279 KNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLARP-DEAKSVVAKGVRQIPKSANKIRALRM 357 (605)
Q Consensus 279 ~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~~-~~Ak~~l~~al~~~P~s~~a~~vl~k 357 (605)
...|.+..+|..++..+...|++++|..+++.+++.+|++..+|+..+-++.. +. +.++. .+ .
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~----~~~~~----------lv--~ 88 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRP----LNDSN----------LL--N 88 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcc----hhhhh----------hh--h
Confidence 44799999999999999999999999999999999999999999887766532 11 11110 01 2
Q ss_pred HHHhCCCcHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh----hcHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 007407 358 ALDEIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALVRL----ETYGVARSVLNKARKKLPKERAIWIAAA 433 (605)
Q Consensus 358 Ale~~P~~~~lw~~l~~le~~e~A~~~l~rAl~~~P~~~~lw~aLa~l----e~~e~A~~vL~~al~~~p~~~~iwi~~a 433 (605)
++...+.+. + -.+...|...+-..|.+-.++..||.. +.+++|..+|+++++..|.++.+...+|
T Consensus 89 ~l~~~~~~~----------~-~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~A 157 (906)
T PRK14720 89 LIDSFSQNL----------K-WAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLA 157 (906)
T ss_pred hhhhccccc----------c-hhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 233333322 1 134445555555677777777776644 5788999999999999999999999999
Q ss_pred HHH-HcCCHHHHHHHHHHHHHHhccCcc-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHH
Q 007407 434 KLE-ANGNTSMVGKIIERGIRALQGEEV-VIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEEC 511 (605)
Q Consensus 434 ~Le-~~g~~~~a~~i~~~al~~~p~~~~-~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~ 511 (605)
... .. +.++|..++.+|+..+-...- ..-.+.|..+...-.. +++.-..|.+.++..--. .--..+|...-..|
T Consensus 158 Y~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~--d~d~f~~i~~ki~~~~~~-~~~~~~~~~l~~~y 233 (906)
T PRK14720 158 TSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSD--DFDFFLRIERKVLGHREF-TRLVGLLEDLYEPY 233 (906)
T ss_pred HHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcc--cchHHHHHHHHHHhhhcc-chhHHHHHHHHHHH
Confidence 644 44 999999999999888643321 1234567765432221 234444555555443111 11344555556677
Q ss_pred HHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 007407 512 KKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKS 547 (605)
Q Consensus 512 ~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~ 547 (605)
...+++++++.+++.+|+++|.+..+...++.++..
T Consensus 234 ~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 234 KALEDWDEVIYILKKILEHDNKNNKAREELIRFYKE 269 (906)
T ss_pred hhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 788899999999999999999999998888888873
No 125
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.76 E-value=2e-07 Score=88.54 Aligned_cols=103 Identities=14% Similarity=0.103 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 007407 500 KKRTWVADVEECKKRGSIETARAIFSPACTVFLTK---KNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGA 576 (605)
Q Consensus 500 ~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~---~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a 576 (605)
....++.++..+...|++++|..+|+++++..|+. ..+|..+|.++...|++++|+..|++++...|++...+..+|
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 113 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA 113 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 44556667777777777777777777777665543 456777777777777777777777777777777777777777
Q ss_pred HHHHHcCC--------------hHHHHHHHHHHHHHCCCC
Q 007407 577 KEKWLAGD--------------VPATRDILQEAYAAIPNS 602 (605)
Q Consensus 577 ~~~~~~gd--------------~~~Ar~il~kAl~~~P~~ 602 (605)
.++...|+ +.+|.+++.+++..+|++
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 77766665 578888888888888876
No 126
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.74 E-value=1.1e-06 Score=86.37 Aligned_cols=177 Identities=18% Similarity=0.179 Sum_probs=151.7
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHh----hcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHH
Q 007407 377 SEEEARILLHRAVECCPLDVELWLALVRL----ETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERG 451 (605)
Q Consensus 377 ~~e~A~~~l~rAl~~~P~~~~lw~aLa~l----e~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~a 451 (605)
+...+...+-+.+...|.+.++ ..++.- ++-+.+..++.++....|.+..+...+++.. .+|++..|...|.++
T Consensus 48 q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA 126 (257)
T COG5010 48 QTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKA 126 (257)
T ss_pred hhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 3445677777788889988887 544432 2455677788888888899999888888877 999999999999999
Q ss_pred HHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 007407 452 IRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVF 531 (605)
Q Consensus 452 l~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~ 531 (605)
...-|. +.+.|..++..|.+.|.++.|+..|.+++++.|. .+.+..+++..+.-.|+++.|+.++.++...-
T Consensus 127 ~~l~p~-----d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~---~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 127 ARLAPT-----DWEAWNLLGAALDQLGRFDEARRAYRQALELAPN---EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred hccCCC-----ChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC---CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 887665 6789999999999999999999999999999998 67778888999999999999999999999988
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007407 532 LTKKNIWLKAAQLEKSYGCRESLIALLRKAV 562 (605)
Q Consensus 532 P~~~~~w~~la~l~~~~g~~e~A~~~lekAl 562 (605)
+.+..+-..++.+....|++++|..+-.+=+
T Consensus 199 ~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 199 AADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred CCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 8899999999999999999999988876543
No 127
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.74 E-value=2.5e-07 Score=85.13 Aligned_cols=103 Identities=13% Similarity=0.036 Sum_probs=96.4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 007407 463 DRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAA 542 (605)
Q Consensus 463 ~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la 542 (605)
..+....+|-.+...|++++|..+|+.++..+|. +...|+.++..+...|++++|+..|.+|+.+.|+++..++.+|
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~---~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag 110 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW---SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 4556677888888999999999999999999998 9999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC
Q 007407 543 QLEKSYGCRESLIALLRKAVTYCPQA 568 (605)
Q Consensus 543 ~l~~~~g~~e~A~~~lekAl~~~P~~ 568 (605)
.++...|+.+.|++.|+.|+..|-.+
T Consensus 111 ~c~L~lG~~~~A~~aF~~Ai~~~~~~ 136 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAVVRICGEV 136 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999433
No 128
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.73 E-value=5.3e-08 Score=77.46 Aligned_cols=67 Identities=18% Similarity=0.198 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHCC
Q 007407 534 KKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAG-DVPATRDILQEAYAAIP 600 (605)
Q Consensus 534 ~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~g-d~~~Ar~il~kAl~~~P 600 (605)
++.+|..+|..+...|++++|+..|++|+..+|+++.+|..+|.+++..| ++++|++.+++|++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45677777777777777777777777777777777777777777777777 57777777777777776
No 129
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.73 E-value=6.1e-07 Score=82.76 Aligned_cols=120 Identities=14% Similarity=0.041 Sum_probs=101.3
Q ss_pred HcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHH
Q 007407 476 RAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTK---KNIWLKAAQLEKSYGCRE 552 (605)
Q Consensus 476 ~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~---~~~w~~la~l~~~~g~~e 552 (605)
..++...+...++.++..+|..+-....++..|..+...|++++|...|+.++...|+. ..+++.++.++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 46677888888999999888844456778889999999999999999999999987665 467888999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 007407 553 SLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAY 596 (605)
Q Consensus 553 ~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl 596 (605)
+|+.+++.. ...+-.+.++...|.++...|++++|+..|++|+
T Consensus 103 ~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 EALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 999999763 3334457788899999999999999999999985
No 130
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.70 E-value=5e-05 Score=78.67 Aligned_cols=248 Identities=16% Similarity=0.111 Sum_probs=167.9
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHH----HHhCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHh----hcHHHHHHHHHHHH
Q 007407 349 ANKIRALRMALDEIPDSVRLWKAL----VEISSEEEARILLHRAVECCPLDV-ELWLALVRL----ETYGVARSVLNKAR 419 (605)
Q Consensus 349 ~~a~~vl~kAle~~P~~~~lw~~l----~~le~~e~A~~~l~rAl~~~P~~~-~lw~aLa~l----e~~e~A~~vL~~al 419 (605)
..|.+.+.++-++.+...-.+... -++++.+.|-.++.++.+.-|++. .+.+..+++ .++..|+..+..+.
T Consensus 101 ~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll 180 (400)
T COG3071 101 QQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLL 180 (400)
T ss_pred HHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 345566666666666655444333 346788999999999998855442 233444443 47899999999999
Q ss_pred HhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcc-c--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 007407 420 KKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEV-V--IDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGV 495 (605)
Q Consensus 420 ~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~-~--~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p 495 (605)
+..|.++++.....+++ ..|+...+..++.+.-+.---+.. . .....|...-..+...+..+. +..-.+.-|
T Consensus 181 ~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~g----L~~~W~~~p 256 (400)
T COG3071 181 EMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEG----LKTWWKNQP 256 (400)
T ss_pred HhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchH----HHHHHHhcc
Confidence 99999999988888888 999999888888776543211100 0 011122211111111111111 111122112
Q ss_pred Cc-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 007407 496 DE-EDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLM 574 (605)
Q Consensus 496 ~~-~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~ 574 (605)
.. -.++.+-..+|.-++..|..++|..+...+++..=+.. + ..+. -..+-++....++..++.++.+|++|.+++.
T Consensus 257 r~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L-~~~~-~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~t 333 (400)
T COG3071 257 RKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-L-CRLI-PRLRPGDPEPLIKAAEKWLKQHPEDPLLLST 333 (400)
T ss_pred HHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-H-HHHH-hhcCCCCchHHHHHHHHHHHhCCCChhHHHH
Confidence 11 01356677888899999999999999999998753332 2 2111 1235678899999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCC
Q 007407 575 GAKEKWLAGDVPATRDILQEAYAAIPNSE 603 (605)
Q Consensus 575 ~a~~~~~~gd~~~Ar~il~kAl~~~P~~~ 603 (605)
+|.++.+.+.+.+|...|+.|+..-|+..
T Consensus 334 LG~L~~k~~~w~kA~~~leaAl~~~~s~~ 362 (400)
T COG3071 334 LGRLALKNKLWGKASEALEAALKLRPSAS 362 (400)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhcCCChh
Confidence 99999999999999999999999888653
No 131
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.68 E-value=4.6e-08 Score=76.92 Aligned_cols=62 Identities=16% Similarity=0.200 Sum_probs=32.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCC
Q 007407 541 AAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNS 602 (605)
Q Consensus 541 la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~ 602 (605)
+|..+...|++++|+.+|++++...|+++.+|+.+|.+++..|++++|+..|+++++.+|+|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 44555555555555555555555555555555555555555555555555555555555554
No 132
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.68 E-value=7.2e-07 Score=97.96 Aligned_cols=209 Identities=11% Similarity=0.055 Sum_probs=161.5
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007407 373 VEISSEEEARILLHRAVECCPLDVELWLALVRLETYGVARSVLNKARKKLPKERAIWIAAAKLEANGNTSMVGKIIERGI 452 (605)
Q Consensus 373 ~~le~~e~A~~~l~rAl~~~P~~~~lw~aLa~le~~e~A~~vL~~al~~~p~~~~iwi~~a~Le~~g~~~~a~~i~~~al 452 (605)
..++-...|..+++|.---+| +-+.|..++....|..++.+-++ .|.++.+|..++.+-.+ ..++++|+
T Consensus 409 ~slGitksAl~I~Erlemw~~----vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d------~s~yEkaw 477 (777)
T KOG1128|consen 409 LSLGITKSALVIFERLEMWDP----VILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHD------PSLYEKAW 477 (777)
T ss_pred HHcchHHHHHHHHHhHHHHHH----HHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccC------hHHHHHHH
Confidence 334455778888877432221 12344556666777777777776 67778888888765311 13556665
Q ss_pred HHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 007407 453 RALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFL 532 (605)
Q Consensus 453 ~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P 532 (605)
+..... +...-...+......+++..|...++..+.++|- ...+|+.++....+.+++..|...|..++...|
T Consensus 478 Elsn~~----sarA~r~~~~~~~~~~~fs~~~~hle~sl~~npl---q~~~wf~~G~~ALqlek~q~av~aF~rcvtL~P 550 (777)
T KOG1128|consen 478 ELSNYI----SARAQRSLALLILSNKDFSEADKHLERSLEINPL---QLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEP 550 (777)
T ss_pred HHhhhh----hHHHHHhhccccccchhHHHHHHHHHHHhhcCcc---chhHHHhccHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 543221 1111122222334467899999999999999988 899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHC
Q 007407 533 TKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAI 599 (605)
Q Consensus 533 ~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~ 599 (605)
++...|..++..+.++|+..+|...+++|++.+-++..+|..|.-+..+-|.++.|.+.+.+-+...
T Consensus 551 d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 551 DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999998999999999999999999999999999988764
No 133
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.67 E-value=5.3e-07 Score=85.26 Aligned_cols=121 Identities=15% Similarity=0.105 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHH
Q 007407 481 VTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTK---KNIWLKAAQLEKSYGCRESLIAL 557 (605)
Q Consensus 481 ~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~---~~~w~~la~l~~~~g~~e~A~~~ 557 (605)
..+...+...+..... ......|+..+..+...|++++|...|.+++...|+. ..+|..+|.++...|++++|+..
T Consensus 16 ~~~~~~l~~~~~~~~~-~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 16 TIVADILLRILPTTSG-EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred ccchhhhhHhccCCch-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3344444444444433 2356778889999999999999999999999887763 45899999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHH-------HcCChH-------HHHHHHHHHHHHCCCC
Q 007407 558 LRKAVTYCPQAEVLWLMGAKEKW-------LAGDVP-------ATRDILQEAYAAIPNS 602 (605)
Q Consensus 558 lekAl~~~P~~~~l~l~~a~~~~-------~~gd~~-------~Ar~il~kAl~~~P~~ 602 (605)
|++|+...|.+...|..++.+++ ..|+++ +|..++++++..+|++
T Consensus 95 ~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 95 YFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 99999999998888888888888 677766 6677777788888864
No 134
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.66 E-value=7.7e-07 Score=78.01 Aligned_cols=107 Identities=13% Similarity=0.123 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHH
Q 007407 465 DTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTK---KNIWLKA 541 (605)
Q Consensus 465 ~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~---~~~w~~l 541 (605)
+.++..+..+...|+++.|...+..++...|+++.....++.++..+...|+++.|..+|+.++..+|++ ..+|..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 4577788888889999999999999999887743345678889999999999999999999999998885 6789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 007407 542 AQLEKSYGCRESLIALLRKAVTYCPQAEVL 571 (605)
Q Consensus 542 a~l~~~~g~~e~A~~~lekAl~~~P~~~~l 571 (605)
+.++...|++++|..+|++++...|++...
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 999999999999999999999999988654
No 135
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.65 E-value=2.4e-06 Score=90.43 Aligned_cols=136 Identities=13% Similarity=0.014 Sum_probs=111.1
Q ss_pred CCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhH
Q 007407 423 PKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKK 501 (605)
Q Consensus 423 p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~ 501 (605)
|....+|+-.+.-. ..|+++.|.+.++..+...|++ .-.|...++++...+...+|.+.+++++...|. ..
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N-----~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~---~~ 374 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDN-----PYYLELAGDILLEANKAKEAIERLKKALALDPN---SP 374 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---cc
Confidence 67777777777544 7888888998888888887763 455666778888888899999999999999888 67
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 007407 502 RTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCP 566 (605)
Q Consensus 502 ~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P 566 (605)
-.|+.++..+...|++.+|+.++...+..+|+++..|..|++.|...|+..++..-+-.+.....
T Consensus 375 ~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G 439 (484)
T COG4783 375 LLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAG 439 (484)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCC
Confidence 88888999999999999999999999999999999999999999998888777766666665553
No 136
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.64 E-value=1.1e-07 Score=74.73 Aligned_cols=64 Identities=17% Similarity=0.207 Sum_probs=58.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 007407 506 ADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAE 569 (605)
Q Consensus 506 ~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~ 569 (605)
..|..+...|++++|+.+|+.+++.+|++..+|+.+|.++...|++++|..+|++++..+|++|
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 5678899999999999999999999999999999999999999999999999999999999875
No 137
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.61 E-value=8.4e-07 Score=89.92 Aligned_cols=103 Identities=13% Similarity=0.103 Sum_probs=89.4
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHH
Q 007407 501 KRTWVADVEEC-KKRGSIETARAIFSPACTVFLTK---KNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQA---EVLWL 573 (605)
Q Consensus 501 ~~~~~~~a~~~-~~~g~~~~A~~i~~~al~~~P~~---~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~---~~l~l 573 (605)
...++..|..+ ...|++++|+..|+..++.+|++ +.+++.+|.++...|++++|+..|++++..+|++ +.+|+
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 45666666654 56789999999999999999987 5789999999999999999999999999988865 77888
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCC
Q 007407 574 MGAKEKWLAGDVPATRDILQEAYAAIPNSE 603 (605)
Q Consensus 574 ~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~ 603 (605)
.+|.++...|++++|+.+|+++++..|++.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 889999889999999999999999999875
No 138
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=1.3e-06 Score=87.90 Aligned_cols=120 Identities=17% Similarity=0.119 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-C--CHHHHHH
Q 007407 480 VVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSY-G--CRESLIA 556 (605)
Q Consensus 480 ~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~-g--~~e~A~~ 556 (605)
++...+.++..+..+|+ +..-|..++..|...|++..|...|.+|+++.|+++.+|..+|.++... | .-.++..
T Consensus 138 ~~~l~a~Le~~L~~nP~---d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ 214 (287)
T COG4235 138 MEALIARLETHLQQNPG---DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARA 214 (287)
T ss_pred HHHHHHHHHHHHHhCCC---CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 55566777778888888 7888999999999999999999999999999999999999888777643 2 2457888
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCC
Q 007407 557 LLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNS 602 (605)
Q Consensus 557 ~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~ 602 (605)
+|++|+..+|.+......+|..++..|++.+|...++.-+...|.+
T Consensus 215 ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 215 LLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 9999999999888888888888888999999999999988888765
No 139
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=0.00015 Score=78.52 Aligned_cols=123 Identities=15% Similarity=0.086 Sum_probs=85.4
Q ss_pred CHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHHhcCCCHHHHHHHHHHHHHcCC
Q 007407 479 SVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFS--------PACTVFLTKKNIWLKAAQLEKSYGC 550 (605)
Q Consensus 479 ~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~--------~al~~~P~~~~~w~~la~l~~~~g~ 550 (605)
.+..+...+......+|+ ....+.+..+++.+..|+++.|..++. ..++. -..+.+--....++...++
T Consensus 356 ~~~ka~e~L~~~~~~~p~--~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~-~~~P~~V~aiv~l~~~~~~ 432 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPE--KSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA-KHLPGTVGAIVALYYKIKD 432 (652)
T ss_pred HHhhhHHHHHHHhccCCc--hhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh-ccChhHHHHHHHHHHhccC
Confidence 345555555555555665 136677888899999999999999998 44333 2233444444455666666
Q ss_pred HHHHHHHHHHHHHhC----C---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCCC
Q 007407 551 RESLIALLRKAVTYC----P---QAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSEE 604 (605)
Q Consensus 551 ~e~A~~~lekAl~~~----P---~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~~ 604 (605)
.+.|-.++..|+... + ..-.+|-..+.+..+.|+.++|...|++.++.+|++.+
T Consensus 433 ~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~ 493 (652)
T KOG2376|consen 433 NDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTD 493 (652)
T ss_pred CccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHH
Confidence 667777777777642 2 22445666777888899999999999999999998753
No 140
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.59 E-value=1.5e-07 Score=78.12 Aligned_cols=81 Identities=21% Similarity=0.162 Sum_probs=70.6
Q ss_pred cCCHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 007407 514 RGSIETARAIFSPACTVFLT--KKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDI 591 (605)
Q Consensus 514 ~g~~~~A~~i~~~al~~~P~--~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~i 591 (605)
.|+++.|+.+|+++++..|. +..+|+.+|.++.+.|++++|..++++ ....|.+...++++|+++.+.|++++|+.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 57899999999999999995 567888899999999999999999999 777787878888889999999999999999
Q ss_pred HHHH
Q 007407 592 LQEA 595 (605)
Q Consensus 592 l~kA 595 (605)
|++|
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9886
No 141
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.58 E-value=2.5e-07 Score=73.55 Aligned_cols=67 Identities=18% Similarity=0.171 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 007407 500 KKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYG-CRESLIALLRKAVTYCP 566 (605)
Q Consensus 500 ~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g-~~e~A~~~lekAl~~~P 566 (605)
+..+|...|..+...|++++|+..|.++++.+|++..+|+.+|.++...| ++++|++.|++|++.+|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 56789999999999999999999999999999999999999999999999 79999999999999988
No 142
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.58 E-value=8.3e-07 Score=72.46 Aligned_cols=99 Identities=13% Similarity=0.131 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 007407 466 TWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLE 545 (605)
Q Consensus 466 ~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~ 545 (605)
.|...|..+...|.++.|...++.++...|. ...+|...+..+...++++.|..+|..++...|.+..+|..++.++
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPD---NADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHH
Confidence 4677788888899999999999999999887 5678889999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCC
Q 007407 546 KSYGCRESLIALLRKAVTYCPQ 567 (605)
Q Consensus 546 ~~~g~~e~A~~~lekAl~~~P~ 567 (605)
...|+++.|...+++++..+|+
T Consensus 79 ~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 79 YKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHHhHHHHHHHHHHHHccCCC
Confidence 9999999999999999988874
No 143
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=98.57 E-value=0.00015 Score=76.00 Aligned_cols=335 Identities=10% Similarity=0.085 Sum_probs=208.1
Q ss_pred hhhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhc---------CHHHHHHHHHHHHhhCCCCHHHHHHHHhhcCc
Q 007407 261 NSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELAN---------EEAAARKLITKGCNMCPKNEDVWLEACRLARP 331 (605)
Q Consensus 261 ~~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g---------~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~~ 331 (605)
+....|+.....+|.++++-.- +.+.|..+...-.+.+ .+-+|-++..+..-..|.+...|-++..+...
T Consensus 86 ELA~~df~svE~lf~rCL~k~l-~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~ 164 (660)
T COG5107 86 ELARKDFRSVESLFGRCLKKSL-NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEY 164 (660)
T ss_pred hhhhhhHHHHHHHHHHHHhhhc-cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHh
Confidence 3455677777778877776432 2666755443332222 23444444444334568888888877755211
Q ss_pred -------------hhHHHHHHHHHhhCCCc-------------------------------HHHHHHHHHHHH-------
Q 007407 332 -------------DEAKSVVAKGVRQIPKS-------------------------------ANKIRALRMALD------- 360 (605)
Q Consensus 332 -------------~~Ak~~l~~al~~~P~s-------------------------------~~a~~vl~kAle------- 360 (605)
+.-+..|.+||..--++ -.|+..|+....
T Consensus 165 ~~~~~kwEeQqrid~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v 244 (660)
T COG5107 165 IEELGKWEEQQRIDKIRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSV 244 (660)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccc
Confidence 23456677777654444 112222222221
Q ss_pred h----------CCC-cHHHHHHHHHhCC---------H-HH-HHHHHHHHHHhCCCCHHHHHHHHHh----hcHHHHHHH
Q 007407 361 E----------IPD-SVRLWKALVEISS---------E-EE-ARILLHRAVECCPLDVELWLALVRL----ETYGVARSV 414 (605)
Q Consensus 361 ~----------~P~-~~~lw~~l~~le~---------~-e~-A~~~l~rAl~~~P~~~~lw~aLa~l----e~~e~A~~v 414 (605)
. .|. +..-|..+++++. . .. ---+++.++...|-+.++|+.+..+ .+-+.|..+
T Consensus 245 ~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~t 324 (660)
T COG5107 245 KNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKT 324 (660)
T ss_pred cCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHH
Confidence 1 121 2234888888761 1 22 2226889999999999999976542 345566655
Q ss_pred HHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhcc----------Ccc---c-ccH-----------HHHH
Q 007407 415 LNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQG----------EEV---V-IDR-----------DTWM 468 (605)
Q Consensus 415 L~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~----------~~~---~-~~~-----------~~wl 468 (605)
..++. |.+|.+.+.++..+ ..++.+.+...|+++++.+.. +++ + ... -+|.
T Consensus 325 v~rg~---~~spsL~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C 401 (660)
T COG5107 325 VERGI---EMSPSLTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFC 401 (660)
T ss_pred HHhcc---cCCCchheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHH
Confidence 55554 55555666666665 555666666666666554421 111 0 011 1233
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 007407 469 KEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEE-CKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKS 547 (605)
Q Consensus 469 ~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~-~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~ 547 (605)
-+.....+..-.+.|++++-++-+.+.- ...+++.-|.+ +...|++..|..+|+-.+..||+....-..+-.++..
T Consensus 402 ~~~N~v~r~~Gl~aaR~~F~k~rk~~~~---~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~ 478 (660)
T COG5107 402 VHLNYVLRKRGLEAARKLFIKLRKEGIV---GHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIR 478 (660)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccCCC---CcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 3333333333478888999888775522 33344433332 3458899999999999999999999998899899999
Q ss_pred cCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCC
Q 007407 548 YGCRESLIALLRKAVTYCPQA--EVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNS 602 (605)
Q Consensus 548 ~g~~e~A~~~lekAl~~~P~~--~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~ 602 (605)
.++-+.|+.+|++++....+. ..+|......+..-|+...+..+=++-.+..|.-
T Consensus 479 inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 479 INDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred hCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 999999999999998775433 5567766667778899998888888888887753
No 144
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.56 E-value=0.00019 Score=85.77 Aligned_cols=228 Identities=11% Similarity=0.078 Sum_probs=153.5
Q ss_pred HhCCHHHHHHHHHHHHHhCCCC----HHHH--HHHHH----hhcHHHHHHHHHHHHHhCCC--------CHHHHHHHHHH
Q 007407 374 EISSEEEARILLHRAVECCPLD----VELW--LALVR----LETYGVARSVLNKARKKLPK--------ERAIWIAAAKL 435 (605)
Q Consensus 374 ~le~~e~A~~~l~rAl~~~P~~----~~lw--~aLa~----le~~e~A~~vL~~al~~~p~--------~~~iwi~~a~L 435 (605)
..++++.|...+.+++...... ..++ ..++. .++++.|...+.+++..... ...++..++.+
T Consensus 503 ~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 582 (903)
T PRK04841 503 CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQL 582 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 3458899999999998764321 1111 12222 24788898888888775321 11234455665
Q ss_pred H-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHH--HHHH--HHHH
Q 007407 436 E-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKR--TWVA--DVEE 510 (605)
Q Consensus 436 e-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~--~~~~--~a~~ 510 (605)
. ..|+++.|...+.+++......+.......+...+..+...|+.+.|...+..++........... .... .+..
T Consensus 583 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 662 (903)
T PRK04841 583 LWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIY 662 (903)
T ss_pred HHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHH
Confidence 5 779999999999999887653321122344555777888899999999999988765332100111 1111 1233
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHH
Q 007407 511 CKKRGSIETARAIFSPACTVFLTKK----NIWLKAAQLEKSYGCRESLIALLRKAVTYCP------QAEVLWLMGAKEKW 580 (605)
Q Consensus 511 ~~~~g~~~~A~~i~~~al~~~P~~~----~~w~~la~l~~~~g~~e~A~~~lekAl~~~P------~~~~l~l~~a~~~~ 580 (605)
+...|+.+.|...+.......+... ..+..++.++...|++++|..+|++++.... ....+++.+|..++
T Consensus 663 ~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~ 742 (903)
T PRK04841 663 WQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYW 742 (903)
T ss_pred HHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 4557889999988877654332222 2256788899999999999999999998742 12346788899999
Q ss_pred HcCChHHHHHHHHHHHHHCCC
Q 007407 581 LAGDVPATRDILQEAYAAIPN 601 (605)
Q Consensus 581 ~~gd~~~Ar~il~kAl~~~P~ 601 (605)
..|+.++|+..|.+|++....
T Consensus 743 ~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 743 QQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HcCCHHHHHHHHHHHHHHhCc
Confidence 999999999999999997643
No 145
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.52 E-value=5.7e-06 Score=78.55 Aligned_cols=106 Identities=10% Similarity=0.119 Sum_probs=89.5
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 007407 463 DRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAA 542 (605)
Q Consensus 463 ~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la 542 (605)
....+...|..+...|++++|...+++++...|+......+|..++..+...|++++|+.+|.+++...|++...|..+|
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 113 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA 113 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 45567888888889999999999999999887653334578899999999999999999999999999999999999999
Q ss_pred HHHHHcCC--------------HHHHHHHHHHHHHhCCCC
Q 007407 543 QLEKSYGC--------------RESLIALLRKAVTYCPQA 568 (605)
Q Consensus 543 ~l~~~~g~--------------~e~A~~~lekAl~~~P~~ 568 (605)
.++...|+ +++|.+++++++...|++
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 99988877 466777777777777765
No 146
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.49 E-value=3.6e-07 Score=72.35 Aligned_cols=67 Identities=18% Similarity=0.079 Sum_probs=59.6
Q ss_pred HHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 007407 512 KKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKE 578 (605)
Q Consensus 512 ~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~ 578 (605)
...|++++|+.+|++++..+|++..+++.++.++...|++++|..++++++..+|+++.+|.+++++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 4678899999999999999999999999999999999999999999999999999888888887763
No 147
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.48 E-value=6.1e-05 Score=84.15 Aligned_cols=325 Identities=18% Similarity=0.229 Sum_probs=194.1
Q ss_pred hhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcC----c---hhHH
Q 007407 263 ELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLAR----P---DEAK 335 (605)
Q Consensus 263 ~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~----~---~~Ak 335 (605)
..++.+.-..-+++-+..++.+....+.+..+....|++.+-+.--.++.+..|.++.+|++++.=.. . ..+.
T Consensus 91 ~~~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~ 170 (881)
T KOG0128|consen 91 NEGGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVE 170 (881)
T ss_pred ccccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHH
Confidence 44455666677777888888888888888889989999988888888888889999999999875321 1 1233
Q ss_pred HHHHHHHhh-----------------CC--Cc----HHHHHHHHHHHHhCC----CcHHHHHHHHHhC-------CHHHH
Q 007407 336 SVVAKGVRQ-----------------IP--KS----ANKIRALRMALDEIP----DSVRLWKALVEIS-------SEEEA 381 (605)
Q Consensus 336 ~~l~~al~~-----------------~P--~s----~~a~~vl~kAle~~P----~~~~lw~~l~~le-------~~e~A 381 (605)
..+++|+.. .+ .. ..-+-++.+||...- .-..+|..+.+++ ..+..
T Consensus 171 ~~~ekal~dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv 250 (881)
T KOG0128|consen 171 ELFEKALGDYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQV 250 (881)
T ss_pred HHHHHHhcccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHH
Confidence 445555431 11 00 234556777776443 3346888887765 12455
Q ss_pred HHHHHHHHHhCCCCHHHHH-HH----------HHhhcHHHHHHH-------HHHHHHhCCCCHHHHHHHHHHH-HcCCHH
Q 007407 382 RILLHRAVECCPLDVELWL-AL----------VRLETYGVARSV-------LNKARKKLPKERAIWIAAAKLE-ANGNTS 442 (605)
Q Consensus 382 ~~~l~rAl~~~P~~~~lw~-aL----------a~le~~e~A~~v-------L~~al~~~p~~~~iwi~~a~Le-~~g~~~ 442 (605)
+.++.+.+. +|-+.++.. .| .-...++.|... +.+.+...|.....|..+...+ ..|++.
T Consensus 251 ~a~~~~el~-~~~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ 329 (881)
T KOG0128|consen 251 IALFVRELK-QPLDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPV 329 (881)
T ss_pred HHHHHHHHh-ccchhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCch
Confidence 666777664 454443221 00 011123333322 3333334445555677777777 778777
Q ss_pred HHHHHHHHHHHHhccCcccccHHHHHHHHHHH-----------------------------------HHcCCHHH-HHHH
Q 007407 443 MVGKIIERGIRALQGEEVVIDRDTWMKEAEVA-----------------------------------DRAGSVVT-CVAI 486 (605)
Q Consensus 443 ~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~-----------------------------------e~~g~~~~-A~~i 486 (605)
...-++++++...+. +...|+.++... ++.+...+ -...
T Consensus 330 ri~l~~eR~~~E~~~-----~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~ 404 (881)
T KOG0128|consen 330 RIQLIEERAVAEMVL-----DRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQN 404 (881)
T ss_pred HHHHHHHHHHHhccc-----cHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHH
Confidence 777777777766543 355555554433 22221111 1111
Q ss_pred HHHHHHhCCCchhhHHHHHHHHHHHH------HcCCHHHHHHHHHHHHHhcC--------CCHHHHHHHHHHHHH-cCCH
Q 007407 487 ITNTIEIGVDEEDKKRTWVADVEECK------KRGSIETARAIFSPACTVFL--------TKKNIWLKAAQLEKS-YGCR 551 (605)
Q Consensus 487 ~~~al~~~p~~~~~~~~~~~~a~~~~------~~g~~~~A~~i~~~al~~~P--------~~~~~w~~la~l~~~-~g~~ 551 (605)
+...+.... ..+..+..... ....++.-++.|.+|...+- ....++..+|.++.. .++.
T Consensus 405 l~~~ls~~~------~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nm 478 (881)
T KOG0128|consen 405 LEKDLSMTV------ELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNM 478 (881)
T ss_pred HHHHHHHHH------HHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhch
Confidence 222222111 11111111112 22345556666666655431 134567778888876 5788
Q ss_pred HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHC
Q 007407 552 ESLIALLRKAVTYCPQA-EVLWLMGAKEKWLAGDVPATRDILQEAYAAI 599 (605)
Q Consensus 552 e~A~~~lekAl~~~P~~-~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~ 599 (605)
+.++.++...+...-.+ ...|+.+.......|+...||.++.+|+...
T Consensus 479 d~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~ 527 (881)
T KOG0128|consen 479 DKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQV 527 (881)
T ss_pred hhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcC
Confidence 99999999887765444 3489999999999999999999999998643
No 148
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.48 E-value=1.9e-06 Score=88.83 Aligned_cols=163 Identities=16% Similarity=0.060 Sum_probs=118.6
Q ss_pred HHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Q 007407 430 IAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADV 508 (605)
Q Consensus 430 i~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a 508 (605)
+..|.+. ..|+++.|.+++.++ .+.+........+.+.++++.|...++.+-.++.+ ..-..+...+.
T Consensus 106 ~~~A~i~~~~~~~~~AL~~l~~~----------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD-~~l~qLa~awv 174 (290)
T PF04733_consen 106 LLAATILFHEGDYEEALKLLHKG----------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDED-SILTQLAEAWV 174 (290)
T ss_dssp HHHHHHHCCCCHHHHHHCCCTTT----------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCC-HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHcc----------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHHHHH
Confidence 3344566 778777776665543 14555666677888889999999999888777654 11222222333
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh-HH
Q 007407 509 EECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDV-PA 587 (605)
Q Consensus 509 ~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~-~~ 587 (605)
.+....+++.+|..+|++....+|..+.++..++.+....|++++|.+++++|+..+|+++.++..++-+....|+. +.
T Consensus 175 ~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~ 254 (290)
T PF04733_consen 175 NLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEA 254 (290)
T ss_dssp HHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHH
T ss_pred HHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhH
Confidence 44444557899999999988888889999999999999999999999999999999999999888888777777766 77
Q ss_pred HHHHHHHHHHHCCCCC
Q 007407 588 TRDILQEAYAAIPNSE 603 (605)
Q Consensus 588 Ar~il~kAl~~~P~~~ 603 (605)
+.+.+.+....+|+++
T Consensus 255 ~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 255 AERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHHhCCCCh
Confidence 8889988888888875
No 149
>PRK15331 chaperone protein SicA; Provisional
Probab=98.48 E-value=2.4e-06 Score=79.09 Aligned_cols=102 Identities=12% Similarity=0.049 Sum_probs=79.6
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007407 500 KKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEK 579 (605)
Q Consensus 500 ~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~ 579 (605)
.....+..|..+...|++++|..+|+-.+..+|.++..|+.||.++...++++.|+..|-.|....+++|...+..|.++
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~ 115 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQ 115 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHH
Confidence 45555666777777888888888888888888888888888888888888888888888888888777777777788888
Q ss_pred HHcCChHHHHHHHHHHHHHCCCC
Q 007407 580 WLAGDVPATRDILQEAYAAIPNS 602 (605)
Q Consensus 580 ~~~gd~~~Ar~il~kAl~~~P~~ 602 (605)
...|+.+.|+..|..+++ .|.+
T Consensus 116 l~l~~~~~A~~~f~~a~~-~~~~ 137 (165)
T PRK15331 116 LLMRKAAKARQCFELVNE-RTED 137 (165)
T ss_pred HHhCCHHHHHHHHHHHHh-Ccch
Confidence 888888888888887777 4443
No 150
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.48 E-value=7.4e-06 Score=75.50 Aligned_cols=123 Identities=14% Similarity=0.026 Sum_probs=102.1
Q ss_pred HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCC
Q 007407 437 ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGS 516 (605)
Q Consensus 437 ~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~ 516 (605)
..++...+...++..+...|.+. .....++..|..+...|+++.|...|+.++...|+......+++.++.++...|+
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~--ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~ 100 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSP--YAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQ 100 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCCh--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCC
Confidence 56778888888899888887652 2356778889999999999999999999999876633345678888999999999
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007407 517 IETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAV 562 (605)
Q Consensus 517 ~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl 562 (605)
+++|...+..+ ...+-.+.++..+|.++...|+.++|+..|++||
T Consensus 101 ~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 101 YDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 99999999763 3445567888899999999999999999999985
No 151
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.46 E-value=2.5e-05 Score=76.33 Aligned_cols=163 Identities=13% Similarity=0.028 Sum_probs=109.8
Q ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHH
Q 007407 426 RAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTW 504 (605)
Q Consensus 426 ~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~ 504 (605)
++.++..|... ..|++.+|+..|++.+...|.+.. ....++..|..+.+.|++..|...++..+...|.++....++
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~--a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPY--APQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTT--HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 44455556544 788888888888888888776533 445566667777778888888888888888888765444555
Q ss_pred HHHHHHHHH-----------cCCHHHHHHHHHHHHHhcCCCHHHH-----------------HHHHHHHHHcCCHHHHHH
Q 007407 505 VADVEECKK-----------RGSIETARAIFSPACTVFLTKKNIW-----------------LKAAQLEKSYGCRESLIA 556 (605)
Q Consensus 505 ~~~a~~~~~-----------~g~~~~A~~i~~~al~~~P~~~~~w-----------------~~la~l~~~~g~~e~A~~ 556 (605)
+..+..+.. .+....|+..|+..+..+|++.-+- +..|.++.+.|.+..|..
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~ 162 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAII 162 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHH
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 555444322 2334578889999999999874222 124677788899999999
Q ss_pred HHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHH
Q 007407 557 LLRKAVTYCPQA---EVLWLMGAKEKWLAGDVPATRD 590 (605)
Q Consensus 557 ~lekAl~~~P~~---~~l~l~~a~~~~~~gd~~~Ar~ 590 (605)
.++.+++..|+. +..+..++..+.+.|..+.|..
T Consensus 163 r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 163 RFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 999999999987 4567777888888888875543
No 152
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.43 E-value=6.6e-06 Score=87.71 Aligned_cols=116 Identities=14% Similarity=0.015 Sum_probs=88.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCH
Q 007407 472 EVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCR 551 (605)
Q Consensus 472 ~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~ 551 (605)
..+...+.++.|..++++....+|+ .+...|..+...++-.+|..++.+++..+|.+..++...+.++.+.+++
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~pe------v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERDPE------VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcCCc------HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 3444556777788888887777665 3344566666777777888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 007407 552 ESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQ 593 (605)
Q Consensus 552 e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~ 593 (605)
+.|+++.++|+...|.+-..|..+|++|...|+++.|...+.
T Consensus 251 ~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 251 ELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 888888888888888888888888888888888888876665
No 153
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.40 E-value=7.6e-05 Score=75.01 Aligned_cols=168 Identities=8% Similarity=-0.049 Sum_probs=119.8
Q ss_pred CHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHH
Q 007407 425 ERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRT 503 (605)
Q Consensus 425 ~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~ 503 (605)
++..++..|... ..|++++|...|++.+...|.... .....+..|..+.+.+++..|...+++.+...|+++....+
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~--a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPY--SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence 455565666544 778888888888888888776532 23334555666777788888888888888888876666666
Q ss_pred HHHHHHHHHHcC------------------CHHHHHHHHHHHHHhcCCCHHH---HH--------------HHHHHHHHc
Q 007407 504 WVADVEECKKRG------------------SIETARAIFSPACTVFLTKKNI---WL--------------KAAQLEKSY 548 (605)
Q Consensus 504 ~~~~a~~~~~~g------------------~~~~A~~i~~~al~~~P~~~~~---w~--------------~la~l~~~~ 548 (605)
++..+......+ ....|...|+..++.+|+..-+ .. ..|.+|.+.
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~ 188 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKR 188 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 666665432221 1246778888999999986422 11 235667788
Q ss_pred CCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHH
Q 007407 549 GCRESLIALLRKAVTYCPQA---EVLWLMGAKEKWLAGDVPATRDILQE 594 (605)
Q Consensus 549 g~~e~A~~~lekAl~~~P~~---~~l~l~~a~~~~~~gd~~~Ar~il~k 594 (605)
|.+..|..-++.++...|+. +.+...+...+...|..++|..+...
T Consensus 189 ~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 189 GAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred CchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 99999999999999999876 56677778888899999999887654
No 154
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.39 E-value=3.9e-05 Score=78.96 Aligned_cols=208 Identities=17% Similarity=0.168 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHH-hhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhcc
Q 007407 380 EARILLHRAVECCPLDVELWLALVR-LETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQG 457 (605)
Q Consensus 380 ~A~~~l~rAl~~~P~~~~lw~aLa~-le~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~ 457 (605)
+|..++.+|=+..-....+|..+.. -.++++|...|++| |.+. ..|++.+|...|.++.....+
T Consensus 2 ~a~~l~~~Aek~lk~~~~~~~~f~~~~~~~e~Aa~~y~~A--------------a~~fk~~~~~~~A~~ay~kAa~~~~~ 67 (282)
T PF14938_consen 2 EAEELIKEAEKKLKKSSGFFSFFGSKKPDYEEAADLYEKA--------------ANCFKLAKDWEKAAEAYEKAADCYEK 67 (282)
T ss_dssp HHHHHHHHHHHHCS---TCCCHH--SCHHHHHHHHHHHHH--------------HHHHHHTT-CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccccchhhhcCCCCCCHHHHHHHHHHH--------------HHHHHHHhccchhHHHHHHHHHHHHH
Confidence 4556666666555443333311122 12566666666654 3344 566777777777777666544
Q ss_pred CcccccH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ch-hhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhcC
Q 007407 458 EEVVIDR-DTWMKEAEVADRAGSVVTCVAIITNTIEIGVD--EE-DKKRTWVADVEECKKR-GSIETARAIFSPACTVFL 532 (605)
Q Consensus 458 ~~~~~~~-~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~--~~-~~~~~~~~~a~~~~~~-g~~~~A~~i~~~al~~~P 532 (605)
.+..... ..|.. |..+.+.+++..|...|++++.+... .. .-...+...|.++... |+++.|+..|++|++.+-
T Consensus 68 ~~~~~~Aa~~~~~-Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~ 146 (282)
T PF14938_consen 68 LGDKFEAAKAYEE-AANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYE 146 (282)
T ss_dssp TT-HHHHHHHHHH-HHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH-HHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3322222 33344 33444455888999999998876321 11 1345677888889888 999999999999998863
Q ss_pred C--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHC
Q 007407 533 T--K----KNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQA-------EVLWLMGAKEKWLAGDVPATRDILQEAYAAI 599 (605)
Q Consensus 533 ~--~----~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~-------~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~ 599 (605)
. . ..++..+|.++...|++++|.++|++....+-++ ...++..+.++...||+..|+..|++....+
T Consensus 147 ~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~ 226 (282)
T PF14938_consen 147 QEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQD 226 (282)
T ss_dssp HTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTS
T ss_pred HCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 2 2 4667888999999999999999999998875322 1234555556667999999999999999888
Q ss_pred CCC
Q 007407 600 PNS 602 (605)
Q Consensus 600 P~~ 602 (605)
|+-
T Consensus 227 ~~F 229 (282)
T PF14938_consen 227 PSF 229 (282)
T ss_dssp TTS
T ss_pred CCC
Confidence 864
No 155
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.39 E-value=0.00049 Score=64.81 Aligned_cols=218 Identities=19% Similarity=0.130 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHHhCCCC--HHHHHHH----HHhhcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH-HcCCHHHHHHHHH
Q 007407 379 EEARILLHRAVECCPLD--VELWLAL----VRLETYGVARSVLNKARK--KLPKERAIWIAAAKLE-ANGNTSMVGKIIE 449 (605)
Q Consensus 379 e~A~~~l~rAl~~~P~~--~~lw~aL----a~le~~e~A~~vL~~al~--~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~ 449 (605)
..+...+..++...+.. ......+ .....+..+...+..+.. ..+.....+...+.+. ..+++..+...+.
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (291)
T COG0457 40 AEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLE 119 (291)
T ss_pred HHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 44555556666555542 2222211 222345666666666665 4566666666666655 6666777777777
Q ss_pred HHHHHhccCcccccHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007407 450 RGIRALQGEEVVIDRDTWMKEAE-VADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPAC 528 (605)
Q Consensus 450 ~al~~~p~~~~~~~~~~wl~~A~-~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al 528 (605)
.++...+.. ...+..... .+...|.+..+...+.+++...|........+......+...+++..|...+.+++
T Consensus 120 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 120 KALALDPDP-----DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHcCCCCc-----chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 777654432 112222223 56667778888888888876554100134444445555667778888888888888
Q ss_pred HhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCC
Q 007407 529 TVFLT-KKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPN 601 (605)
Q Consensus 529 ~~~P~-~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~ 601 (605)
...|. ....+..++..+...+.++.+...+..++...|.....+...+..+...+.++.+...+.+++...|.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 88888 68888888888888888888888888888888876566666666555667788888888888887774
No 156
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.38 E-value=7.9e-06 Score=89.98 Aligned_cols=167 Identities=15% Similarity=0.061 Sum_probs=129.7
Q ss_pred HHHHHH---HHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----
Q 007407 426 RAIWIA---AAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDE---- 497 (605)
Q Consensus 426 ~~iwi~---~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~---- 497 (605)
+.+|.. ++.+. +.|=...|..+|++. ..|-..+..|...|....|..|..+-++.+|+.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-------------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc 461 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-------------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYC 461 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-------------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHH
Confidence 445543 44454 666666666666653 457777777777777777777777777643331
Q ss_pred --------------------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007407 498 --------------------EDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIAL 557 (605)
Q Consensus 498 --------------------~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~ 557 (605)
..+..+-..++....+.++|+++...++..++++|.....|+.+|.+..+.+++..|.+.
T Consensus 462 ~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 462 LLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred HhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHH
Confidence 001122222333345678999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCCCC
Q 007407 558 LRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSEEI 605 (605)
Q Consensus 558 lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~~I 605 (605)
|.+++...|++...|..++..+.+.++..+|+..+.+|++.|-++..|
T Consensus 542 F~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~i 589 (777)
T KOG1128|consen 542 FHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQI 589 (777)
T ss_pred HHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCee
Confidence 999999999999999999999999999999999999999998666543
No 157
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.36 E-value=1.3e-05 Score=89.03 Aligned_cols=72 Identities=17% Similarity=0.117 Sum_probs=37.8
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCC
Q 007407 531 FLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSE 603 (605)
Q Consensus 531 ~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~ 603 (605)
+|..+.++..+|......|++++|...|++|+..+| +...|..+|+++...|+.++|...|++|+.++|.++
T Consensus 416 ~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 416 LNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 444445555555555555555555555555555555 344455555555555555555555555555555543
No 158
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.35 E-value=0.00022 Score=72.78 Aligned_cols=317 Identities=11% Similarity=0.013 Sum_probs=168.5
Q ss_pred hhhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCH---HHHHHHH-hhcCchhHHH
Q 007407 261 NSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNE---DVWLEAC-RLARPDEAKS 336 (605)
Q Consensus 261 ~~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~---~lwle~a-~L~~~~~Ak~ 336 (605)
+..+||+++|...|+-+...+--+...|+.+|-...-.|.+.+|.++..+ ||+++ .+.+..+ +|+... -.-
T Consensus 67 ~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~k----a~k~pL~~RLlfhlahklndEk-~~~ 141 (557)
T KOG3785|consen 67 YFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEK----APKTPLCIRLLFHLAHKLNDEK-RIL 141 (557)
T ss_pred HHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhh----CCCChHHHHHHHHHHHHhCcHH-HHH
Confidence 46889999999999999987766788899999988889999999988765 45443 3333333 232211 001
Q ss_pred HHHHHHh--------hCCC------cHHHHHHHHHHHHhCCCcHH----HHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Q 007407 337 VVAKGVR--------QIPK------SANKIRALRMALDEIPDSVR----LWKALVEISSEEEARILLHRAVECCPLDVEL 398 (605)
Q Consensus 337 ~l~~al~--------~~P~------s~~a~~vl~kAle~~P~~~~----lw~~l~~le~~e~A~~~l~rAl~~~P~~~~l 398 (605)
.+..-|+ ...- -.+|..||.+.|.-+|+-.. +-+.+..+.=++-+..++.-.+...|+++-+
T Consensus 142 ~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA 221 (557)
T KOG3785|consen 142 TFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIA 221 (557)
T ss_pred HHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHH
Confidence 1111110 0000 03345555555555554322 1122233333355555555555566665543
Q ss_pred HHHHH----Hhh------------------cH-----------------HHHHHHHHHHHHhCCCCHHHHHHHHHHH-Hc
Q 007407 399 WLALV----RLE------------------TY-----------------GVARSVLNKARKKLPKERAIWIAAAKLE-AN 438 (605)
Q Consensus 399 w~aLa----~le------------------~~-----------------e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~ 438 (605)
....+ ++. +| +.|..||-..++.+ |++.++++-++ .+
T Consensus 222 ~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~I---PEARlNL~iYyL~q 298 (557)
T KOG3785|consen 222 KNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHI---PEARLNLIIYYLNQ 298 (557)
T ss_pred HHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhC---hHhhhhheeeeccc
Confidence 32211 110 01 11222222222222 23344444333 55
Q ss_pred CCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHhCCCchhhHHHHHHHHHHH
Q 007407 439 GNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSV-------VTCVAIITNTIEIGVDEEDKKRTWVADVEEC 511 (605)
Q Consensus 439 g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~-------~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~ 511 (605)
+++.+|..++... . |.+...++..+......|+- ..|...++-+=+...+ -|...-..-.|..+
T Consensus 299 ~dVqeA~~L~Kdl---~-----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~e-cDTIpGRQsmAs~f 369 (557)
T KOG3785|consen 299 NDVQEAISLCKDL---D-----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALE-CDTIPGRQSMASYF 369 (557)
T ss_pred ccHHHHHHHHhhc---C-----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccc-cccccchHHHHHHH
Confidence 5555555544331 1 12333444444444433321 1222222211111111 11111122223333
Q ss_pred HHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCChHHHHH
Q 007407 512 KKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEV-LWLMGAKEKWLAGDVPATRD 590 (605)
Q Consensus 512 ~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~-l~l~~a~~~~~~gd~~~Ar~ 590 (605)
.-..++++.+..+..+-..|-++-.+-+.+|+.....|++.+|.++|-+.-.-.-++.. ...++|+++...+.+.-|-.
T Consensus 370 FL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~ 449 (557)
T KOG3785|consen 370 FLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWD 449 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHH
Confidence 44456888888888888889999899999999999999999999998765433223333 34678889988888887766
Q ss_pred HHHH
Q 007407 591 ILQE 594 (605)
Q Consensus 591 il~k 594 (605)
++-+
T Consensus 450 ~~lk 453 (557)
T KOG3785|consen 450 MMLK 453 (557)
T ss_pred HHHh
Confidence 6543
No 159
>PRK11906 transcriptional regulator; Provisional
Probab=98.32 E-value=9.9e-06 Score=86.24 Aligned_cols=150 Identities=9% Similarity=0.042 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHc---C------CHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHH
Q 007407 441 TSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRA---G------SVVTCVAIITNTIEIGVDEEDKKRTWVADVEEC 511 (605)
Q Consensus 441 ~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~---g------~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~ 511 (605)
...|..+|.+|+..-+-+ |.....+...|..+... | ...+|....++++.++|. +..+....+...
T Consensus 274 ~~~Al~lf~ra~~~~~ld--p~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~---Da~a~~~~g~~~ 348 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQ--TLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV---DGKILAIMGLIT 348 (458)
T ss_pred HHHHHHHHHHHhhcccCC--cccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC---CHHHHHHHHHHH
Confidence 667888888888322211 22444555444433321 2 234567778888888887 666666677767
Q ss_pred HHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHcCChHHHHH
Q 007407 512 KKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVL-WLMGAKEKWLAGDVPATRD 590 (605)
Q Consensus 512 ~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l-~l~~a~~~~~~gd~~~Ar~ 590 (605)
...++++.|...|++|+.++|+...+|+.+|.++.-.|+.++|++.+++|++.+|..... .+.+-...+-..-.+.|.+
T Consensus 349 ~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (458)
T PRK11906 349 GLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIK 428 (458)
T ss_pred HhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHH
Confidence 777778888888888888888888888888888888888888888888888888854221 1111111123455777777
Q ss_pred HHHHH
Q 007407 591 ILQEA 595 (605)
Q Consensus 591 il~kA 595 (605)
.|-+-
T Consensus 429 ~~~~~ 433 (458)
T PRK11906 429 LYYKE 433 (458)
T ss_pred HHhhc
Confidence 77654
No 160
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=1.5e-05 Score=83.12 Aligned_cols=102 Identities=11% Similarity=-0.028 Sum_probs=90.7
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007407 500 KKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEK 579 (605)
Q Consensus 500 ~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~ 579 (605)
....++++|..+...+.+.+|+..+.++|+..|++..++++.|+++...|+++.|+..|++|++..|.|..+...++++.
T Consensus 256 k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 256 KLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLK 335 (397)
T ss_pred HHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 34567788889999999999999999999999999999999999999999999999999999999999999988888887
Q ss_pred HH-cCChHHHHHHHHHHHHHCCC
Q 007407 580 WL-AGDVPATRDILQEAYAAIPN 601 (605)
Q Consensus 580 ~~-~gd~~~Ar~il~kAl~~~P~ 601 (605)
.+ ....++.+++|.+.|...+.
T Consensus 336 ~k~~~~~~kekk~y~~mF~k~~~ 358 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFAKLAE 358 (397)
T ss_pred HHHHHHHHHHHHHHHHHhhcccc
Confidence 66 44456669999999987654
No 161
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=98.31 E-value=3.4e-05 Score=80.81 Aligned_cols=143 Identities=19% Similarity=0.248 Sum_probs=114.8
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHhCC----------------HHHHHHHHHHHHHhCCCCHHHHHHHHHhh----cHHHH
Q 007407 352 IRALRMALDEIPDSVRLWKALVEISS----------------EEEARILLHRAVECCPLDVELWLALVRLE----TYGVA 411 (605)
Q Consensus 352 ~~vl~kAle~~P~~~~lw~~l~~le~----------------~e~A~~~l~rAl~~~P~~~~lw~aLa~le----~~e~A 411 (605)
...|.+.+..+|+++++|..++++.+ .+..+.+|++|++.+|.+..+|+.+.+.. ..+..
T Consensus 5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l 84 (321)
T PF08424_consen 5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKL 84 (321)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 45688899999999999999987641 14566799999999999999999887654 45667
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHH-H-cC--CHHHHHHHHHHHHHHhccCcc-------------cccHHHHHHHHHHH
Q 007407 412 RSVLNKARKKLPKERAIWIAAAKLE-A-NG--NTSMVGKIIERGIRALQGEEV-------------VIDRDTWMKEAEVA 474 (605)
Q Consensus 412 ~~vL~~al~~~p~~~~iwi~~a~Le-~-~g--~~~~a~~i~~~al~~~p~~~~-------------~~~~~~wl~~A~~~ 474 (605)
.+..++++..+|.++.+|..+.... . .+ .+..+..+|.++|..+..... ..-..+.+.++.++
T Consensus 85 ~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl 164 (321)
T PF08424_consen 85 AKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFL 164 (321)
T ss_pred HHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHH
Confidence 7789999999999999999998654 2 22 588999999999998854311 01235566778888
Q ss_pred HHcCCHHHHHHHHHHHHHhC
Q 007407 475 DRAGSVVTCVAIITNTIEIG 494 (605)
Q Consensus 475 e~~g~~~~A~~i~~~al~~~ 494 (605)
...|..+.|.++++.+++.+
T Consensus 165 ~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 165 RQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHCCchHHHHHHHHHHHHHH
Confidence 89999999999999999875
No 162
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.30 E-value=1.9e-05 Score=70.22 Aligned_cols=99 Identities=15% Similarity=0.190 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---CHHHHHHHH
Q 007407 466 TWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLT---KKNIWLKAA 542 (605)
Q Consensus 466 ~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~---~~~~w~~la 542 (605)
.++..|..+...|..++|..+|++++..++..++....++.++..+...|++++|..++++++..+|+ +..+...++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 46777888888999999999999999988776667889999999999999999999999999999998 888888889
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh
Q 007407 543 QLEKSYGCRESLIALLRKAVTY 564 (605)
Q Consensus 543 ~l~~~~g~~e~A~~~lekAl~~ 564 (605)
..+...|+.++|+..+-.++..
T Consensus 83 l~L~~~gr~~eAl~~~l~~la~ 104 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEALAE 104 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999999999998887753
No 163
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.29 E-value=2.7e-05 Score=78.98 Aligned_cols=109 Identities=11% Similarity=0.066 Sum_probs=93.7
Q ss_pred cHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---CHHHH
Q 007407 463 DRDTWMKEAEVA-DRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLT---KKNIW 538 (605)
Q Consensus 463 ~~~~wl~~A~~~-e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~---~~~~w 538 (605)
....|+..|..+ ...|+++.|...|+..+...|++.....+++.+|.++...|+++.|+..|+.++..+|+ .+.+|
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 346677777655 45688999999999999999985444677888899999999999999999999999988 47889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 007407 539 LKAAQLEKSYGCRESLIALLRKAVTYCPQAEVL 571 (605)
Q Consensus 539 ~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l 571 (605)
+.+|.++...|+.+.|..+|+++++.+|++...
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 999999999999999999999999999988654
No 164
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.28 E-value=2.2e-06 Score=67.78 Aligned_cols=67 Identities=13% Similarity=0.126 Sum_probs=61.2
Q ss_pred hhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhh
Q 007407 262 SELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRL 328 (605)
Q Consensus 262 ~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L 328 (605)
.+.|++++|..+|++++..+|+++.+++.+|.++...|++++|+.++++++..+|++..+|...+++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 3678999999999999999999999999999999999999999999999999999998888776653
No 165
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.27 E-value=5e-06 Score=66.71 Aligned_cols=68 Identities=18% Similarity=0.207 Sum_probs=55.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 007407 509 EECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGA 576 (605)
Q Consensus 509 ~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a 576 (605)
..+.+.++++.|+.++++++..+|+++.+|..+|.++...|++.+|...|+++++.+|+++......+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 45677888888888888888888888888888888888888888888888888888888777655544
No 166
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.26 E-value=2.4e-05 Score=73.88 Aligned_cols=106 Identities=12% Similarity=0.082 Sum_probs=87.9
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 007407 463 DRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAA 542 (605)
Q Consensus 463 ~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la 542 (605)
....|...+..+...|.++.|...+++++.+.|+......+|...+.++...|++++|+..|++++...|.....|..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 45678888888888999999999999999886653334568999999999999999999999999999999999999999
Q ss_pred HHHH-------HcCCHH-------HHHHHHHHHHHhCCCC
Q 007407 543 QLEK-------SYGCRE-------SLIALLRKAVTYCPQA 568 (605)
Q Consensus 543 ~l~~-------~~g~~e-------~A~~~lekAl~~~P~~ 568 (605)
.++. ..|+++ +|..+|++++...|.+
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 8888 677766 5666666777777754
No 167
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.25 E-value=2.5e-06 Score=68.52 Aligned_cols=63 Identities=21% Similarity=0.293 Sum_probs=59.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCCC
Q 007407 542 AQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSEE 604 (605)
Q Consensus 542 a~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~~ 604 (605)
..++...++++.|++++++++..+|+++.+|..+|.++...|++++|...|+++++.+|+++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD 64 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence 567889999999999999999999999999999999999999999999999999999998764
No 168
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.25 E-value=4.4e-06 Score=69.27 Aligned_cols=83 Identities=16% Similarity=0.123 Sum_probs=71.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007407 477 AGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIA 556 (605)
Q Consensus 477 ~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~ 556 (605)
.|+++.|..++++++...|.++ +...|+.+|..+.+.|++++|..++++ +...|.+..+++.+|.++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 5778999999999999988533 566788899999999999999999999 88888888888888999999999999999
Q ss_pred HHHHH
Q 007407 557 LLRKA 561 (605)
Q Consensus 557 ~lekA 561 (605)
+|++|
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99875
No 169
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.22 E-value=6.6e-05 Score=73.37 Aligned_cols=141 Identities=13% Similarity=0.066 Sum_probs=110.7
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH---HHHH
Q 007407 463 DRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKK---NIWL 539 (605)
Q Consensus 463 ~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~---~~w~ 539 (605)
+...+...|..+...|++..|...|+.++...|..+.-..+++..|..+...|+++.|+..|+..++.+|+++ .+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 4566778888889999999999999999999998766778888999999999999999999999999999964 4666
Q ss_pred HHHHHHHHc-----------CCHHHHHHHHHHHHHhCCCCHHH-----------------HHHHHHHHHHcCChHHHHHH
Q 007407 540 KAAQLEKSY-----------GCRESLIALLRKAVTYCPQAEVL-----------------WLMGAKEKWLAGDVPATRDI 591 (605)
Q Consensus 540 ~la~l~~~~-----------g~~e~A~~~lekAl~~~P~~~~l-----------------~l~~a~~~~~~gd~~~Ar~i 591 (605)
.+|...... +...+|...|+..+...|+++-+ -+..|+++++.|.+..|..-
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r 163 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIR 163 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 667665433 23457999999999999987321 13446788899999999999
Q ss_pred HHHHHHHCCCCC
Q 007407 592 LQEAYAAIPNSE 603 (605)
Q Consensus 592 l~kAl~~~P~~~ 603 (605)
++.+++..|+++
T Consensus 164 ~~~v~~~yp~t~ 175 (203)
T PF13525_consen 164 FQYVIENYPDTP 175 (203)
T ss_dssp HHHHHHHSTTSH
T ss_pred HHHHHHHCCCCc
Confidence 999999999864
No 170
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=98.22 E-value=4e-05 Score=80.36 Aligned_cols=139 Identities=19% Similarity=0.273 Sum_probs=102.1
Q ss_pred HHHHHHhhCCCCHHHHHHHHhhcCc-----h----hHHHHHHHHHhhCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHhC-
Q 007407 307 LITKGCNMCPKNEDVWLEACRLARP-----D----EAKSVVAKGVRQIPKSANKIRALRMALDEIPDSVRLWKALVEIS- 376 (605)
Q Consensus 307 ll~~~l~~~P~~~~lwle~a~L~~~-----~----~Ak~~l~~al~~~P~s~~a~~vl~kAle~~P~~~~lw~~l~~le- 376 (605)
-+.+.++.+|.+++.|++++.+... . ..+.+. ..+..+|++||+++|++.+||..+++..
T Consensus 7 el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~----------E~klsilerAL~~np~~~~L~l~~l~~~~ 76 (321)
T PF08424_consen 7 ELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALA----------ERKLSILERALKHNPDSERLLLGYLEEGE 76 (321)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3566777788888888888776432 0 111111 3466789999999999999999887764
Q ss_pred ---CHHHHHHHHHHHHHhCCCCHHHHHHHHHhh-------cHHHHHHHHHHHHHhCCC---C---------------HHH
Q 007407 377 ---SEEEARILLHRAVECCPLDVELWLALVRLE-------TYGVARSVLNKARKKLPK---E---------------RAI 428 (605)
Q Consensus 377 ---~~e~A~~~l~rAl~~~P~~~~lw~aLa~le-------~~e~A~~vL~~al~~~p~---~---------------~~i 428 (605)
+.+......++++...|.+..+|..+.... .+...+.+|.+++..+.. . ..+
T Consensus 77 ~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v 156 (321)
T PF08424_consen 77 KVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYV 156 (321)
T ss_pred HhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHH
Confidence 567778889999999999999999988653 366778888888776532 0 123
Q ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHHh
Q 007407 429 WIAAAKLE-ANGNTSMVGKIIERGIRAL 455 (605)
Q Consensus 429 wi~~a~Le-~~g~~~~a~~i~~~al~~~ 455 (605)
++.++.+. +.|..+.|..+++-.++..
T Consensus 157 ~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 157 FLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 44455666 8899999999998888764
No 171
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=4.2e-05 Score=77.11 Aligned_cols=120 Identities=13% Similarity=0.076 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHc---CCH
Q 007407 441 TSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKR---GSI 517 (605)
Q Consensus 441 ~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~---g~~ 517 (605)
.+....-++.-+...|. +.+-|..++..+...|+...|...|.+++.+.|+ +..++..+++.+... ...
T Consensus 138 ~~~l~a~Le~~L~~nP~-----d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~---n~~~~~g~aeaL~~~a~~~~t 209 (287)
T COG4235 138 MEALIARLETHLQQNPG-----DAEGWDLLGRAYMALGRASDALLAYRNALRLAGD---NPEILLGLAEALYYQAGQQMT 209 (287)
T ss_pred HHHHHHHHHHHHHhCCC-----CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCCccc
Confidence 34444445555666555 5678999999999999999999999999999888 788888888765543 245
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 007407 518 ETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQA 568 (605)
Q Consensus 518 ~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~ 568 (605)
.++..+|++++..+|++......||.-++..|++.+|...++..+...|.+
T Consensus 210 a~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 210 AKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 688999999999999999999999999999999999999999999998744
No 172
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=98.19 E-value=1.1e-06 Score=87.61 Aligned_cols=160 Identities=18% Similarity=0.206 Sum_probs=111.6
Q ss_pred cCCccccchhhhhhcccccccccchhHhHhhhhhhccccccCCCcccCCCCc---ccccchhhhhhhhhhhh-hhhcccc
Q 007407 159 RIPEIGDYSRRNKRKRFDSFVPVPDSLLQKARQEQQHVIALDPSSRAAGGAE---SVVTDLTAVGEGRGKIL-TLKLDGI 234 (605)
Q Consensus 159 ~~pe~~d~~~~~~~~~~~~~~~~pd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~i~~~R~~~l-~~kld~~ 234 (605)
.|||.-|+-.|+ -|+|--=+.|...| ..+...+..++..-.... .+..||.+|...|-+-+ ..+-...
T Consensus 12 ~IpEleDl~ekg------iFs~dE~~~IvktR--r~fE~rL~rr~~klnDf~~YI~yE~nleklRaKR~Kr~~v~~K~s~ 83 (435)
T COG5191 12 MIPELEDLKEKG------IFSPDELRRIVKTR--RKFELRLQRREKKLNDFMRYIKYECNLEKLRAKRVKRKKVGKKASF 83 (435)
T ss_pred hchHHHHHHHcC------CCCHHHHHHHHHHH--HHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHhcccccc
Confidence 789999987664 66655555565433 223333433321110011 14789999999888433 2223444
Q ss_pred ccccC------------CccccCchhHHhhhhhhcccchhhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHH-HHhcCH
Q 007407 235 SDSVT------------GLTVFDPSGYLTRMNDLKITTNSELRDILKARKIVRAVTKNSPKKPLGWIQAARLE-ELANEE 301 (605)
Q Consensus 235 ~~~~~------------~~~~~dp~~yl~~L~~~~~~~~~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle-~~~g~~ 301 (605)
+|..- ..-..||+-|...+..+ ...+-+++...+|.++++.+|.|.+.|+..+..+ ...+++
T Consensus 84 sD~sipqk~~f~~~R~tnkff~D~k~w~~y~~Y~-----~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani 158 (435)
T COG5191 84 SDMSIPQKKIFELYRSTNKFFNDPKIWSQYAAYV-----IKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANI 158 (435)
T ss_pred hhccccceeeEeeehhhhcCCCCcHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccH
Confidence 44211 11235899887777653 3556788889999999999999999999987777 678999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHhhcCc
Q 007407 302 AAARKLITKGCNMCPKNEDVWLEACRLARP 331 (605)
Q Consensus 302 ~~Ar~ll~~~l~~~P~~~~lwle~a~L~~~ 331 (605)
+.+|+++.+|++.+|.++.+|.++.+++..
T Consensus 159 ~s~Ra~f~~glR~N~~~p~iw~eyfr~El~ 188 (435)
T COG5191 159 ESSRAMFLKGLRMNSRSPRIWIEYFRMELM 188 (435)
T ss_pred HHHHHHHHhhhccCCCCchHHHHHHHHHHH
Confidence 999999999999999999999999999754
No 173
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.18 E-value=4.1e-05 Score=68.01 Aligned_cols=96 Identities=21% Similarity=0.195 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 007407 502 RTWVADVEECKKRGSIETARAIFSPACTVFLTK---KNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQ---AEVLWLMG 575 (605)
Q Consensus 502 ~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~---~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~---~~~l~l~~ 575 (605)
.++++.|..+-..|+.++|+.+|++++...+.. ..+++.++..+...|++++|..+|++++...|+ +..+..++
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 356778888899999999999999999975443 678999999999999999999999999999998 78899999
Q ss_pred HHHHHHcCChHHHHHHHHHHHH
Q 007407 576 AKEKWLAGDVPATRDILQEAYA 597 (605)
Q Consensus 576 a~~~~~~gd~~~Ar~il~kAl~ 597 (605)
+..++..|+.++|...+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999988775
No 174
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.16 E-value=0.0032 Score=75.36 Aligned_cols=298 Identities=11% Similarity=0.014 Sum_probs=178.3
Q ss_pred hhhccHHHHHHHHHHHHHhCCCC---------hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcCch
Q 007407 262 SELRDILKARKIVRAVTKNSPKK---------PLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLARPD 332 (605)
Q Consensus 262 ~~~gd~~kAr~ll~~al~~~P~~---------~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~~~ 332 (605)
...|++..|..++..+....+.. .......+.+....|+++.|..++++++...|.... +....-+
T Consensus 420 ~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~a~---- 494 (903)
T PRK04841 420 QSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWY-YSRIVAT---- 494 (903)
T ss_pred HHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccH-HHHHHHH----
Confidence 45678899999998887653321 112233456667899999999999999986555432 1110000
Q ss_pred hHHHHHHHHHhhCCCcHHHHHHHHHHHHhCC----CcHHHHH------HHHHhCCHHHHHHHHHHHHHhCCCC-------
Q 007407 333 EAKSVVAKGVRQIPKSANKIRALRMALDEIP----DSVRLWK------ALVEISSEEEARILLHRAVECCPLD------- 395 (605)
Q Consensus 333 ~Ak~~l~~al~~~P~s~~a~~vl~kAle~~P----~~~~lw~------~l~~le~~e~A~~~l~rAl~~~P~~------- 395 (605)
..+..+.....+-..+...+++++.... .....|. .+...++.+.|...+.+++......
T Consensus 495 ---~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 571 (903)
T PRK04841 495 ---SVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPM 571 (903)
T ss_pred ---HHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccH
Confidence 0000001111111223333444433221 1111111 1123458899999999988863221
Q ss_pred -HHHHHHHHH----hhcHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccH
Q 007407 396 -VELWLALVR----LETYGVARSVLNKARKKLPK-----ERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDR 464 (605)
Q Consensus 396 -~~lw~aLa~----le~~e~A~~vL~~al~~~p~-----~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~ 464 (605)
..++..++. .+++++|...+.+++..... ....+..++.+. ..|+...|...+.++.......+.....
T Consensus 572 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~ 651 (903)
T PRK04841 572 HEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDW 651 (903)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhH
Confidence 112222222 35789999999988775432 133344566777 8999999999999997765443211001
Q ss_pred HHHH--HHHHHHHHcCCHHHHHHHHHHHHHhCCCch-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC------CCH
Q 007407 465 DTWM--KEAEVADRAGSVVTCVAIITNTIEIGVDEE-DKKRTWVADVEECKKRGSIETARAIFSPACTVFL------TKK 535 (605)
Q Consensus 465 ~~wl--~~A~~~e~~g~~~~A~~i~~~al~~~p~~~-~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P------~~~ 535 (605)
..+. ..+..+...|..+.|...+.......+... .....+...+..+...|++++|..+|.+++.... ...
T Consensus 652 ~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a 731 (903)
T PRK04841 652 IANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLN 731 (903)
T ss_pred hhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHH
Confidence 0111 112334457888888888766544222100 0122356778889999999999999999988632 223
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 007407 536 NIWLKAAQLEKSYGCRESLIALLRKAVTYCPQ 567 (605)
Q Consensus 536 ~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~ 567 (605)
.++..+|.++...|+.++|...+.+|+.....
T Consensus 732 ~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 732 RNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 56778899999999999999999999998753
No 175
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.13 E-value=0.00027 Score=71.01 Aligned_cols=142 Identities=10% Similarity=-0.009 Sum_probs=115.5
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHH
Q 007407 463 DRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTK---KNIWL 539 (605)
Q Consensus 463 ~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~---~~~w~ 539 (605)
+...+...|..+...|+++.|...|+.++...|..+.-....+.+|..+.+.++++.|+..|++.++.+|++ ..+++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 566788889889999999999999999999999855455566788899999999999999999999999986 45677
Q ss_pred HHHHHHHHcC---------------C---HHHHHHHHHHHHHhCCCCHH---H--------------HHHHHHHHHHcCC
Q 007407 540 KAAQLEKSYG---------------C---RESLIALLRKAVTYCPQAEV---L--------------WLMGAKEKWLAGD 584 (605)
Q Consensus 540 ~la~l~~~~g---------------~---~e~A~~~lekAl~~~P~~~~---l--------------~l~~a~~~~~~gd 584 (605)
.+|......+ + ...|+..|++.+...|+++- + -+..|+++++.|.
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~ 190 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGA 190 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 7776643332 1 24688999999999998732 1 1234667899999
Q ss_pred hHHHHHHHHHHHHHCCCCCC
Q 007407 585 VPATRDILQEAYAAIPNSEE 604 (605)
Q Consensus 585 ~~~Ar~il~kAl~~~P~~~~ 604 (605)
+..|..-++..++..|+++.
T Consensus 191 y~AA~~r~~~v~~~Yp~t~~ 210 (243)
T PRK10866 191 YVAVVNRVEQMLRDYPDTQA 210 (243)
T ss_pred hHHHHHHHHHHHHHCCCCch
Confidence 99999999999999998763
No 176
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.13 E-value=6.8e-05 Score=80.07 Aligned_cols=110 Identities=13% Similarity=0.042 Sum_probs=60.8
Q ss_pred CCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHH
Q 007407 439 GNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIE 518 (605)
Q Consensus 439 g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~ 518 (605)
+.++.|..+|++..+..|. .+...|..+...+...+|..++.+++...|. +..++...|.++...++++
T Consensus 183 ~~~~~ai~lle~L~~~~pe--------v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~---d~~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 183 QRYDEAIELLEKLRERDPE--------VAVLLARVYLLMNEEVEAIRLLNEALKENPQ---DSELLNLQAEFLLSKKKYE 251 (395)
T ss_pred ccHHHHHHHHHHHHhcCCc--------HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhcCCHH
Confidence 3445555555554443322 2333444444444455555555555555555 4555555566666666666
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007407 519 TARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLR 559 (605)
Q Consensus 519 ~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~le 559 (605)
.|..+.++++...|++...|+.|+.+|...|++++|+-.+.
T Consensus 252 lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 252 LALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 66666666666666666666666666666666666654444
No 177
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.12 E-value=0.00012 Score=81.32 Aligned_cols=148 Identities=10% Similarity=0.027 Sum_probs=101.5
Q ss_pred HHHhCCCCHHHHHHHHHh----h-----cHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhcc
Q 007407 388 AVECCPLDVELWLALVRL----E-----TYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQG 457 (605)
Q Consensus 388 Al~~~P~~~~lw~aLa~l----e-----~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~ 457 (605)
+...-|.+.++|-.+.+- . ....|+..|++|++..|+...+|..++... .. ..+ .+.
T Consensus 329 ~~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~-----------~~~--~~~ 395 (517)
T PRK10153 329 LQQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVR-----------HSQ--QPL 395 (517)
T ss_pred HhccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH-----------Hhc--CCc
Confidence 334567777777655432 1 245677777777777777776666654332 00 000 000
Q ss_pred CcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH
Q 007407 458 EEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEI--GVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKK 535 (605)
Q Consensus 458 ~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~--~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~ 535 (605)
.. .....+.....+++.. +|. ...++...+......|++++|...|++|+.++|+ .
T Consensus 396 -----~~-------------~~l~~a~~~~~~a~al~~~~~---~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~ 453 (517)
T PRK10153 396 -----DE-------------KQLAALSTELDNIVALPELNV---LPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-W 453 (517)
T ss_pred -----cH-------------HHHHHHHHHHHHhhhcccCcC---ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-H
Confidence 00 1123344444455554 333 4567777888888899999999999999999994 7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 007407 536 NIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEV 570 (605)
Q Consensus 536 ~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~ 570 (605)
..|..+|.++...|++++|...|++|+..+|.++.
T Consensus 454 ~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 454 LNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 89999999999999999999999999999998875
No 178
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=0.0043 Score=63.61 Aligned_cols=309 Identities=13% Similarity=0.012 Sum_probs=183.0
Q ss_pred cHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHH-HHHHhh---cCchhHHHHHHHH
Q 007407 266 DILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVW-LEACRL---ARPDEAKSVVAKG 341 (605)
Q Consensus 266 d~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lw-le~a~L---~~~~~Ak~~l~~a 341 (605)
.++.|..+|++++..+|.....-+..|-.+.+..-++-+.+++.--++..|+|.-+. +.++.+ .....|..-.
T Consensus 166 HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~--- 242 (557)
T KOG3785|consen 166 HYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEK--- 242 (557)
T ss_pred HHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHH---
Confidence 488999999999999999887778888888888889999999999999999987542 333322 2222221111
Q ss_pred HhhCCCcHHHHHHHHHHHHhCCCcHHHHHHHH-----HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh----hcHHHHH
Q 007407 342 VRQIPKSANKIRALRMALDEIPDSVRLWKALV-----EISSEEEARILLHRAVECCPLDVELWLALVRL----ETYGVAR 412 (605)
Q Consensus 342 l~~~P~s~~a~~vl~kAle~~P~~~~lw~~l~-----~le~~e~A~~~l~rAl~~~P~~~~lw~aLa~l----e~~e~A~ 412 (605)
+.+ ......+...-..++ -+.+-+.|..+|--.++.+|. +.+.|+-+ .+..+|.
T Consensus 243 ----------k~l----adN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPE---ARlNL~iYyL~q~dVqeA~ 305 (557)
T KOG3785|consen 243 ----------KEL----ADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPE---ARLNLIIYYLNQNDVQEAI 305 (557)
T ss_pred ----------HHH----HhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChH---hhhhheeeecccccHHHHH
Confidence 111 111111122222222 222557888888888888875 34444332 2444554
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHH-HcCC---HHHHHHHHHHHHHHhccCccc-ccHHHHHHHHHHHHHcCCHHHHHHHH
Q 007407 413 SVLNKARKKLPKERAIWIAAAKLE-ANGN---TSMVGKIIERGIRALQGEEVV-IDRDTWMKEAEVADRAGSVVTCVAII 487 (605)
Q Consensus 413 ~vL~~al~~~p~~~~iwi~~a~Le-~~g~---~~~a~~i~~~al~~~p~~~~~-~~~~~wl~~A~~~e~~g~~~~A~~i~ 487 (605)
.+ +....|+.|.-++..+-.. ..|+ ..+-.++-++-++....++.. ++..-....|...-..-.++...-.+
T Consensus 306 ~L---~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~Yl 382 (557)
T KOG3785|consen 306 SL---CKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYL 382 (557)
T ss_pred HH---HhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 44 4456799888777766433 4443 222233333434433332210 01001111222222222356666555
Q ss_pred HHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 007407 488 TNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVF-LTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCP 566 (605)
Q Consensus 488 ~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~-P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P 566 (605)
..+-+...+ +-.+.+.+|+.....|++.+|..+|-++-... .++......+|..+...|.++.|+.++-+- ..|
T Consensus 383 nSi~sYF~N---dD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~--~t~ 457 (557)
T KOG3785|consen 383 NSIESYFTN---DDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT--NTP 457 (557)
T ss_pred HHHHHHhcC---cchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc--CCc
Confidence 555444444 33456778888889999999999997664433 334455556789999999999999888642 123
Q ss_pred -CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCC
Q 007407 567 -QAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNS 602 (605)
Q Consensus 567 -~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~ 602 (605)
+.-.+....|...++.+.+=-|-+.|...=..+|+-
T Consensus 458 ~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 458 SERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 223445556777778777766666666665666653
No 179
>PRK15331 chaperone protein SicA; Provisional
Probab=98.05 E-value=0.00011 Score=68.25 Aligned_cols=105 Identities=10% Similarity=-0.025 Sum_probs=93.8
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 007407 463 DRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAA 542 (605)
Q Consensus 463 ~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la 542 (605)
..+....+|-..-..|++++|..+|+-..-.+|. +...|+.+|..+...++++.|...|..+..+.++++...+..|
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~---n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag 112 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFY---NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTG 112 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence 3455566777777899999999999999999988 7889999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 007407 543 QLEKSYGCRESLIALLRKAVTYCPQAEVL 571 (605)
Q Consensus 543 ~l~~~~g~~e~A~~~lekAl~~~P~~~~l 571 (605)
..+...|+.+.|+..|+.++. .|.+..+
T Consensus 113 qC~l~l~~~~~A~~~f~~a~~-~~~~~~l 140 (165)
T PRK15331 113 QCQLLMRKAAKARQCFELVNE-RTEDESL 140 (165)
T ss_pred HHHHHhCCHHHHHHHHHHHHh-CcchHHH
Confidence 999999999999999999998 4555444
No 180
>PRK11906 transcriptional regulator; Provisional
Probab=98.03 E-value=0.0002 Score=76.49 Aligned_cols=148 Identities=9% Similarity=0.015 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHH---HhCCCCHHHHHHHHHHH----HcC------CHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHH
Q 007407 408 YGVARSVLNKAR---KKLPKERAIWIAAAKLE----ANG------NTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVA 474 (605)
Q Consensus 408 ~e~A~~vL~~al---~~~p~~~~iwi~~a~Le----~~g------~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~ 474 (605)
.+.|..+|.+|+ ...|.....+..++... -.| +..++..+..+|++..+. +.......|...
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-----Da~a~~~~g~~~ 348 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-----DGKILAIMGLIT 348 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHH
Confidence 356777888888 77777776666655322 122 244666667777776543 555555556655
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHcCCHH
Q 007407 475 DRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKK--NIWLKAAQLEKSYGCRE 552 (605)
Q Consensus 475 e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~--~~w~~la~l~~~~g~~e 552 (605)
-..|.++.+...+++++.++|+ ...+|+..+..+.-.|+.++|+..+++++++.|... .+...+..+|..+ -.+
T Consensus 349 ~~~~~~~~a~~~f~rA~~L~Pn---~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~ 424 (458)
T PRK11906 349 GLSGQAKVSHILFEQAKIHSTD---IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLK 424 (458)
T ss_pred HhhcchhhHHHHHHHHhhcCCc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chh
Confidence 5666688888888888888887 777888888777788888888888888888888754 3333333344433 356
Q ss_pred HHHHHHHHHHHh
Q 007407 553 SLIALLRKAVTY 564 (605)
Q Consensus 553 ~A~~~lekAl~~ 564 (605)
+++++|-+-.+.
T Consensus 425 ~~~~~~~~~~~~ 436 (458)
T PRK11906 425 NNIKLYYKETES 436 (458)
T ss_pred hhHHHHhhcccc
Confidence 666666554433
No 181
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.01 E-value=0.00037 Score=71.70 Aligned_cols=180 Identities=17% Similarity=0.153 Sum_probs=121.7
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHhhcHHHHHHHHHHHHHhCC---C---CHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007407 377 SEEEARILLHRAVECCPLDVELWLALVRLETYGVARSVLNKARKKLP---K---ERAIWIAAAKLEANGNTSMVGKIIER 450 (605)
Q Consensus 377 ~~e~A~~~l~rAl~~~P~~~~lw~aLa~le~~e~A~~vL~~al~~~p---~---~~~iwi~~a~Le~~g~~~~a~~i~~~ 450 (605)
++++|..+|.+|-.+. -....++.|...|.++....- . -...|..++.+.+.+++..|+.++++
T Consensus 30 ~~e~Aa~~y~~Aa~~f----------k~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~~~~~Ai~~~~~ 99 (282)
T PF14938_consen 30 DYEEAADLYEKAANCF----------KLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKGDPDEAIECYEK 99 (282)
T ss_dssp HHHHHHHHHHHHHHHH----------HHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH----------HHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 5677777777765321 112345555555555544321 1 12335556666644588899999999
Q ss_pred HHHHhccCcccc-cHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCc---hhhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007407 451 GIRALQGEEVVI-DRDTWMKEAEVADRA-GSVVTCVAIITNTIEIGVDE---EDKKRTWVADVEECKKRGSIETARAIFS 525 (605)
Q Consensus 451 al~~~p~~~~~~-~~~~wl~~A~~~e~~-g~~~~A~~i~~~al~~~p~~---~~~~~~~~~~a~~~~~~g~~~~A~~i~~ 525 (605)
|+..+...|.+. -.......|..++.. |+++.|...|++++...-.+ ......+...|.++...|++++|..+|+
T Consensus 100 A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e 179 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYE 179 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999887665432 235667788888888 89999999999999863211 1234567788999999999999999999
Q ss_pred HHHHhc---CC-CH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 007407 526 PACTVF---LT-KK---NIWLKAAQLEKSYGCRESLIALLRKAVTYCP 566 (605)
Q Consensus 526 ~al~~~---P~-~~---~~w~~la~l~~~~g~~e~A~~~lekAl~~~P 566 (605)
++.... |. .. ..++..+.++...|+...|...|++....+|
T Consensus 180 ~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~ 227 (282)
T PF14938_consen 180 EVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDP 227 (282)
T ss_dssp HHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTST
T ss_pred HHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 998764 21 22 4566677778888999999999999998887
No 182
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.01 E-value=0.00018 Score=65.34 Aligned_cols=104 Identities=16% Similarity=0.140 Sum_probs=80.2
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHH
Q 007407 500 KKRTWVADVEECKKRGSIETARAIFSPACTVFLTK---KNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEV---LWL 573 (605)
Q Consensus 500 ~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~---~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~---l~l 573 (605)
....++..|....+.|++.+|+..|+.+...+|.. ..+-+.++.++.+.|+++.|+..+++-++++|+|+. +++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 34556777777888888888888888888887763 567777788888888888888888888888887744 456
Q ss_pred HHHHHHHHcCC---------------hHHHHHHHHHHHHHCCCCC
Q 007407 574 MGAKEKWLAGD---------------VPATRDILQEAYAAIPNSE 603 (605)
Q Consensus 574 ~~a~~~~~~gd---------------~~~Ar~il~kAl~~~P~~~ 603 (605)
+.|...+.... ...|+.-|++.+...|+|+
T Consensus 89 ~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 89 MRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 66666655544 7889999999999999986
No 183
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.97 E-value=0.00012 Score=73.05 Aligned_cols=100 Identities=14% Similarity=0.111 Sum_probs=87.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Q 007407 504 WVADVEECKKRGSIETARAIFSPACTVFLTK---KNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQA---EVLWLMGAK 577 (605)
Q Consensus 504 ~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~---~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~---~~l~l~~a~ 577 (605)
.+..|.-+...|+|..|...|..-++.+|+. +.+++-||.++...|+++.|..+|..+++..|++ |+.++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 5566777788888999999999999999985 4667777999999999999999999999987755 788999999
Q ss_pred HHHHcCChHHHHHHHHHHHHHCCCCC
Q 007407 578 EKWLAGDVPATRDILQEAYAAIPNSE 603 (605)
Q Consensus 578 ~~~~~gd~~~Ar~il~kAl~~~P~~~ 603 (605)
+....|+.+.|+.+|++.++..|+.+
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 99999999999999999999999864
No 184
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.94 E-value=0.017 Score=60.08 Aligned_cols=271 Identities=22% Similarity=0.179 Sum_probs=189.3
Q ss_pred hhhccHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHH-----HHHHHhhcCchhH
Q 007407 262 SELRDILKARKIVRAVTKNSPKK--PLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDV-----WLEACRLARPDEA 334 (605)
Q Consensus 262 ~~~gd~~kAr~ll~~al~~~P~~--~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~l-----wle~a~L~~~~~A 334 (605)
...||-..||++-++..+.--.+ |-+.+.-|.-.+..|+++.|++-|+-++. +|.--.+ +++.=++...+
T Consensus 95 agAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~Gare-- 171 (531)
T COG3898 95 AGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGARE-- 171 (531)
T ss_pred hccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHH--
Confidence 57789999999988887543333 33445557777888999999999988775 3543222 22222222222
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHhCCCcHHHHHHHHH----hCCHHHHHHHHHHHHHh--C-CCCHH----HHH-H-
Q 007407 335 KSVVAKGVRQIPKSANKIRALRMALDEIPDSVRLWKALVE----ISSEEEARILLHRAVEC--C-PLDVE----LWL-A- 401 (605)
Q Consensus 335 k~~l~~al~~~P~s~~a~~vl~kAle~~P~~~~lw~~l~~----le~~e~A~~~l~rAl~~--~-P~~~~----lw~-a- 401 (605)
.+++.-..+-+..|+-...|....+ -++.+.|+++++...+. + |+-.+ +.+ +
T Consensus 172 ---------------aAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAk 236 (531)
T COG3898 172 ---------------AARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAK 236 (531)
T ss_pred ---------------HHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Confidence 2344455566777777766665543 34788999988765443 2 22221 111 1
Q ss_pred -HHHhh-cHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcC
Q 007407 402 -LVRLE-TYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAG 478 (605)
Q Consensus 402 -La~le-~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g 478 (605)
...+. +...|+..-..+.+..|.-...-+..++.. +.|+..++-++++.+.+..|. .++|..|. ..+.|
T Consensus 237 A~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH------P~ia~lY~--~ar~g 308 (531)
T COG3898 237 AMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH------PDIALLYV--RARSG 308 (531)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC------hHHHHHHH--HhcCC
Confidence 11222 466788888889999999877777777755 999999999999999998774 56677653 23455
Q ss_pred CHHHHHHHHHHHH---HhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CCHHHH
Q 007407 479 SVVTCVAIITNTI---EIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSY-GCRESL 554 (605)
Q Consensus 479 ~~~~A~~i~~~al---~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~-g~~e~A 554 (605)
+++...++++- +..|+ +....+..++.....|++..||.--+.+....|.. +++..++.++... |+-.++
T Consensus 309 --dta~dRlkRa~~L~slk~n---naes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~v 382 (531)
T COG3898 309 --DTALDRLKRAKKLESLKPN---NAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKV 382 (531)
T ss_pred --CcHHHHHHHHHHHHhcCcc---chHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHH
Confidence 56665555543 44566 77888888999999999999999999999999987 6777788888766 999999
Q ss_pred HHHHHHHHHh
Q 007407 555 IALLRKAVTY 564 (605)
Q Consensus 555 ~~~lekAl~~ 564 (605)
+..+-+++..
T Consensus 383 R~wlAqav~A 392 (531)
T COG3898 383 RQWLAQAVKA 392 (531)
T ss_pred HHHHHHHhcC
Confidence 9999999975
No 185
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.92 E-value=0.00017 Score=74.38 Aligned_cols=155 Identities=11% Similarity=0.035 Sum_probs=103.2
Q ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHH
Q 007407 407 TYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVA 485 (605)
Q Consensus 407 ~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~ 485 (605)
++++|.+++++. .+.+......++. ..++++.|.+.++.+-+...+.-+..-...|+..+ .-.+.+..|..
T Consensus 117 ~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~---~g~e~~~~A~y 188 (290)
T PF04733_consen 117 DYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLA---TGGEKYQDAFY 188 (290)
T ss_dssp HHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHH---HTTTCCCHHHH
T ss_pred CHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH---hCchhHHHHHH
Confidence 455665555542 3455444455555 77777777777766543322110001123343322 11225788999
Q ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHh
Q 007407 486 IITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCR-ESLIALLRKAVTY 564 (605)
Q Consensus 486 i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~-e~A~~~lekAl~~ 564 (605)
+|++.....+. ...++...|.+....|++++|..++.+++..+|+++.++..++.+....|+. +.+.+++.+....
T Consensus 189 ~f~El~~~~~~---t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 189 IFEELSDKFGS---TPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHCCS-----SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHhccCC---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 99997665544 6677778888999999999999999999999999999999999988888887 6788888888888
Q ss_pred CCCCHHHH
Q 007407 565 CPQAEVLW 572 (605)
Q Consensus 565 ~P~~~~l~ 572 (605)
+|+|+-+-
T Consensus 266 ~p~h~~~~ 273 (290)
T PF04733_consen 266 NPNHPLVK 273 (290)
T ss_dssp TTTSHHHH
T ss_pred CCCChHHH
Confidence 99987663
No 186
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.92 E-value=0.0052 Score=57.70 Aligned_cols=187 Identities=15% Similarity=0.139 Sum_probs=144.5
Q ss_pred cHHHHHHHHHHHHHhCCCC--HHHHHHHHHHH-HcCCHHHHHHHHHHHHHH--hccCcccccHHHHHHHHHHHHHcCCHH
Q 007407 407 TYGVARSVLNKARKKLPKE--RAIWIAAAKLE-ANGNTSMVGKIIERGIRA--LQGEEVVIDRDTWMKEAEVADRAGSVV 481 (605)
Q Consensus 407 ~~e~A~~vL~~al~~~p~~--~~iwi~~a~Le-~~g~~~~a~~i~~~al~~--~p~~~~~~~~~~wl~~A~~~e~~g~~~ 481 (605)
.+..+...+..+....+.. .......+... ..+....+...+..++.. .+ .....+...+......+...
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 112 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLP-----NLAEALLNLGLLLEALGKYE 112 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhcc-----chHHHHHHHHHHHHHHhhHH
Confidence 3445555666666666552 44445555444 777888888888887763 22 24567777788888888889
Q ss_pred HHHHHHHHHHHhCCCchhhHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHcCCHHHHHHH
Q 007407 482 TCVAIITNTIEIGVDEEDKKRTWVADVE-ECKKRGSIETARAIFSPACTVFL---TKKNIWLKAAQLEKSYGCRESLIAL 557 (605)
Q Consensus 482 ~A~~i~~~al~~~p~~~~~~~~~~~~a~-~~~~~g~~~~A~~i~~~al~~~P---~~~~~w~~la~l~~~~g~~e~A~~~ 557 (605)
.+...+..++...+. ....+..... .+...|+++.|...|.+++...| .....+...+..+...++++.+...
T Consensus 113 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 189 (291)
T COG0457 113 EALELLEKALALDPD---PDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALEL 189 (291)
T ss_pred HHHHHHHHHHcCCCC---cchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHH
Confidence 999999999987766 2233333334 68889999999999999999777 4566677777778888999999999
Q ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCC
Q 007407 558 LRKAVTYCPQ-AEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPN 601 (605)
Q Consensus 558 lekAl~~~P~-~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~ 601 (605)
+.+++...+. ....+..++..+...+++..|...+.+++...|+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 190 LEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred HHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence 9999999998 6888999999999999999999999999999885
No 187
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=7.4e-05 Score=77.93 Aligned_cols=117 Identities=14% Similarity=0.028 Sum_probs=87.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 007407 467 WMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEK 546 (605)
Q Consensus 467 wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~ 546 (605)
-...+..+.+.|.+..|...|++++..-... ..-+.++..... ++ ...+++.++.++.
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~---------------~~~~~ee~~~~~--~~-----k~~~~lNlA~c~l 268 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYR---------------RSFDEEEQKKAE--AL-----KLACHLNLAACYL 268 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhcc---------------ccCCHHHHHHHH--HH-----HHHHhhHHHHHHH
Confidence 3455666677777777777777776642210 000001111110 11 1257788999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCCCC
Q 007407 547 SYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSEEI 605 (605)
Q Consensus 547 ~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~~I 605 (605)
+.+.+..|+....++|...|+|...++.-|+++...|+++.|+..|.+|+++.|+|-.|
T Consensus 269 Kl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~ 327 (397)
T KOG0543|consen 269 KLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAA 327 (397)
T ss_pred hhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999998543
No 188
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.83 E-value=0.011 Score=66.39 Aligned_cols=65 Identities=14% Similarity=0.105 Sum_probs=46.2
Q ss_pred cCC-CHHHHHHHHHHHHHcCCHHHHHHH------HHHHHHhCCC-C------------------------HHHHHHHHHH
Q 007407 531 FLT-KKNIWLKAAQLEKSYGCRESLIAL------LRKAVTYCPQ-A------------------------EVLWLMGAKE 578 (605)
Q Consensus 531 ~P~-~~~~w~~la~l~~~~g~~e~A~~~------lekAl~~~P~-~------------------------~~l~l~~a~~ 578 (605)
+|+ ++.++...+.+...+.++++|..+ |+.|+.+|.+ + ..+.-..|.+
T Consensus 1075 d~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~ 1154 (1416)
T KOG3617|consen 1075 DAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAEL 1154 (1416)
T ss_pred CCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHH
Confidence 454 678888889999888888888766 4556666531 0 2356677888
Q ss_pred HHHcCChHHHHHHHHHH
Q 007407 579 KWLAGDVPATRDILQEA 595 (605)
Q Consensus 579 ~~~~gd~~~Ar~il~kA 595 (605)
+.++|.+..|-+-|-+|
T Consensus 1155 c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1155 CLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHhccchHHHHHHHhhh
Confidence 88888888887776654
No 189
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.82 E-value=4e-05 Score=55.27 Aligned_cols=42 Identities=26% Similarity=0.415 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 007407 536 NIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAK 577 (605)
Q Consensus 536 ~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~ 577 (605)
.+|+.+|.++...|++++|+++|+++++.+|+++.+|..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 456666666666666666666666666666666666666653
No 190
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.80 E-value=0.014 Score=65.73 Aligned_cols=234 Identities=18% Similarity=0.125 Sum_probs=130.7
Q ss_pred HHHHHHHHhCCCc--HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-hhcHHHHHHHHHHHHHhCCC-CHHH
Q 007407 353 RALRMALDEIPDS--VRLWKALVEISSEEEARILLHRAVECCPLDVELWLALVR-LETYGVARSVLNKARKKLPK-ERAI 428 (605)
Q Consensus 353 ~vl~kAle~~P~~--~~lw~~l~~le~~e~A~~~l~rAl~~~P~~~~lw~aLa~-le~~e~A~~vL~~al~~~p~-~~~i 428 (605)
+.+|+|.+ +|+. .+.-...++|+..++|..+|.+.-. .++...|.+ .+.+.+|..+-+. .+-- -...
T Consensus 790 RAlR~a~q-~~~e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~---~DRiHLr~T 860 (1416)
T KOG3617|consen 790 RALRRAQQ-NGEEDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAET---KDRIHLRNT 860 (1416)
T ss_pred HHHHHHHh-CCcchhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhh---ccceehhhh
Confidence 34555543 3432 3344556788888999999988643 233332222 1233333322211 0000 0123
Q ss_pred HHHHHH-HHHcCCHHHHHHHHHHH----------HHHhccC-----cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007407 429 WIAAAK-LEANGNTSMVGKIIERG----------IRALQGE-----EVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIE 492 (605)
Q Consensus 429 wi~~a~-Le~~g~~~~a~~i~~~a----------l~~~p~~-----~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~ 492 (605)
++.+|+ |+..++...|..+|+++ +...|.. ....+..+|.=.+.+.+..|..+.|...|..+-.
T Consensus 861 yy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 861 YYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 555554 55666777777777663 1111211 0012446677778888888888888888887654
Q ss_pred hCC----------C--------chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HhcCC---CHHHHHH-----
Q 007407 493 IGV----------D--------EEDKKRTWVADVEECKKRGSIETARAIFSPAC------TVFLT---KKNIWLK----- 540 (605)
Q Consensus 493 ~~p----------~--------~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al------~~~P~---~~~~w~~----- 540 (605)
... . +..+..+.+.+|..|.+.|++.+|...|.+|- ++... +-.+|..
T Consensus 941 ~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~ 1020 (1416)
T KOG3617|consen 941 YFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSG 1020 (1416)
T ss_pred hhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcC
Confidence 311 0 12255667778888999999888888776543 22211 1222221
Q ss_pred ------HHHHHHHcC-CHHHHHHHHHHH------------------HH-----hCCC-CHHHHHHHHHHHHHcCChHHHH
Q 007407 541 ------AAQLEKSYG-CRESLIALLRKA------------------VT-----YCPQ-AEVLWLMGAKEKWLAGDVPATR 589 (605)
Q Consensus 541 ------la~l~~~~g-~~e~A~~~lekA------------------l~-----~~P~-~~~l~l~~a~~~~~~gd~~~Ar 589 (605)
.|..|...| ....|..+|.+| +. ++|. +|.+....+.+.....++++|.
T Consensus 1021 ~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV 1100 (1416)
T KOG3617|consen 1021 GSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAV 1100 (1416)
T ss_pred chhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHH
Confidence 233334444 666666666655 11 1343 4778788888888888999998
Q ss_pred HHHHHH
Q 007407 590 DILQEA 595 (605)
Q Consensus 590 ~il~kA 595 (605)
..|-.|
T Consensus 1101 ~lL~~a 1106 (1416)
T KOG3617|consen 1101 NLLCLA 1106 (1416)
T ss_pred HHHHHH
Confidence 776543
No 191
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.79 E-value=0.0001 Score=78.52 Aligned_cols=68 Identities=15% Similarity=0.023 Sum_probs=63.9
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 007407 498 EDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNI---WLKAAQLEKSYGCRESLIALLRKAVTYC 565 (605)
Q Consensus 498 ~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~---w~~la~l~~~~g~~e~A~~~lekAl~~~ 565 (605)
++....|+.++..+...|++++|+..|+++++++|++..+ |+.+|.++...|+.++|+..|++|++..
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 4588999999999999999999999999999999999854 9999999999999999999999999973
No 192
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.78 E-value=6.4e-05 Score=54.19 Aligned_cols=44 Identities=20% Similarity=0.505 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhh
Q 007407 285 PLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRL 328 (605)
Q Consensus 285 ~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L 328 (605)
|.+|..+|+++...|+++.|+.+++++++.+|++.++|..++++
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 46899999999999999999999999999999999999988764
No 193
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.74 E-value=0.00098 Score=60.53 Aligned_cols=109 Identities=13% Similarity=0.018 Sum_probs=87.3
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH---HHHH
Q 007407 463 DRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKK---NIWL 539 (605)
Q Consensus 463 ~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~---~~w~ 539 (605)
....+...|....+.|++.+|+..++.+....|-.+-...+.+.++..+...++++.|++.+++-++++|+++ -+++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 4567788888888889999999999998888777555567777788888899999999999999999998864 4566
Q ss_pred HHHHHHHHcCC---------------HHHHHHHHHHHHHhCCCCHHH
Q 007407 540 KAAQLEKSYGC---------------RESLIALLRKAVTYCPQAEVL 571 (605)
Q Consensus 540 ~la~l~~~~g~---------------~e~A~~~lekAl~~~P~~~~l 571 (605)
..|........ ...|...|++.|...|+++-+
T Consensus 89 ~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 89 MRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 66666665544 678999999999999988543
No 194
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.71 E-value=0.00058 Score=60.41 Aligned_cols=89 Identities=18% Similarity=0.154 Sum_probs=58.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCh
Q 007407 510 ECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQA----EVLWLMGAKEKWLAGDV 585 (605)
Q Consensus 510 ~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~----~~l~l~~a~~~~~~gd~ 585 (605)
.+...|++++|+..|.+++.+.|...++|...++.+.-.|+.++|+.-+++|+++.... ...+...|.+|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 34456667777777777777777777777777777777777777777777777765221 33455556666667777
Q ss_pred HHHHHHHHHHHHH
Q 007407 586 PATRDILQEAYAA 598 (605)
Q Consensus 586 ~~Ar~il~kAl~~ 598 (605)
+.||.-|+.|-++
T Consensus 132 d~AR~DFe~AA~L 144 (175)
T KOG4555|consen 132 DAARADFEAAAQL 144 (175)
T ss_pred HHHHHhHHHHHHh
Confidence 7777777666554
No 195
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.64 E-value=0.00051 Score=73.34 Aligned_cols=71 Identities=11% Similarity=0.088 Sum_probs=61.7
Q ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 007407 461 VIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVF 531 (605)
Q Consensus 461 ~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~ 531 (605)
+.....|..++..+...|.+++|.+.|+++|.++|++..-..+|++++..|...|++++|+..|++|++..
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 45789999999999999999999999999999999832112469999999999999999999999999973
No 196
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.61 E-value=0.0016 Score=61.18 Aligned_cols=130 Identities=10% Similarity=0.020 Sum_probs=106.9
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--CHHHHHH
Q 007407 463 DRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLT--KKNIWLK 540 (605)
Q Consensus 463 ~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~--~~~~w~~ 540 (605)
+....+.++..+...|...+|...|++++. ++- .++...++.++......+++..|...++...+.+|. .+.-.+.
T Consensus 88 Tvqnr~rLa~al~elGr~~EA~~hy~qals-G~f-A~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 88 TVQNRYRLANALAELGRYHEAVPHYQQALS-GIF-AHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-ccc-CCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 566777888888899999999999999886 332 226777888899899999999999999999999886 5677888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 007407 541 AAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEA 595 (605)
Q Consensus 541 la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kA 595 (605)
++..+...|.+..|+.-|+.++...|. +..-..|+..+.++|...+|+.-+...
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 899999999999999999999999885 566688888888888777766554433
No 197
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.60 E-value=0.0079 Score=59.71 Aligned_cols=90 Identities=17% Similarity=0.030 Sum_probs=48.6
Q ss_pred cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHH
Q 007407 514 RGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAG-DVPATRDIL 592 (605)
Q Consensus 514 ~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~g-d~~~Ar~il 592 (605)
.+.+..|.-||+..-+.+|-.+.+..-.+.+....|++++|..+++.|+..++++|.....+.-.-...| +.+--.+.+
T Consensus 186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNL 265 (299)
T ss_pred chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 4455566666666655555555555555666666666666666666666666655555444444333333 333334444
Q ss_pred HHHHHHCCCCC
Q 007407 593 QEAYAAIPNSE 603 (605)
Q Consensus 593 ~kAl~~~P~~~ 603 (605)
.+.....|+++
T Consensus 266 ~QLk~~~p~h~ 276 (299)
T KOG3081|consen 266 SQLKLSHPEHP 276 (299)
T ss_pred HHHHhcCCcch
Confidence 55555555544
No 198
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=0.0032 Score=63.22 Aligned_cols=178 Identities=14% Similarity=0.039 Sum_probs=84.3
Q ss_pred HHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH----HhhcHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHcCCHHHHHH
Q 007407 372 LVEISSEEEARILLHRAVECCPLDVELWLALV----RLETYGVARSVLNKARKKLPKERAIWIAAAK-LEANGNTSMVGK 446 (605)
Q Consensus 372 l~~le~~e~A~~~l~rAl~~~P~~~~lw~aLa----~le~~e~A~~vL~~al~~~p~~~~iwi~~a~-Le~~g~~~~a~~ 446 (605)
++.-.++++|+.++..-.+..|.+......|+ ...+|.+|-..|++.-...|.....-+..++ |++.+-+..|..
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALr 99 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALR 99 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHH
Confidence 34434566777777777777776544333332 2335666666777666666665554444443 444444444444
Q ss_pred HHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007407 447 IIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSP 526 (605)
Q Consensus 447 i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~ 526 (605)
+....... .. .........+.+...++++..|+.+++..-+. ......+..+-+..+.|+++.|..-|..
T Consensus 100 V~~~~~D~----~~-L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e-----n~Ad~~in~gCllykegqyEaAvqkFqa 169 (459)
T KOG4340|consen 100 VAFLLLDN----PA-LHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE-----NEADGQINLGCLLYKEGQYEAAVQKFQA 169 (459)
T ss_pred HHHHhcCC----HH-HHHHHHHHHHHHhcccccCcchHHHHHhccCC-----CccchhccchheeeccccHHHHHHHHHH
Confidence 33322111 00 01111111222222344444454444333211 1233334444444555555555555555
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007407 527 ACTVFLTKKNIWLKAAQLEKSYGCRESLIALLR 559 (605)
Q Consensus 527 al~~~P~~~~~w~~la~l~~~~g~~e~A~~~le 559 (605)
|++..--++-+-+.++....+.|++..|+++..
T Consensus 170 AlqvsGyqpllAYniALaHy~~~qyasALk~iS 202 (459)
T KOG4340|consen 170 ALQVSGYQPLLAYNLALAHYSSRQYASALKHIS 202 (459)
T ss_pred HHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHH
Confidence 555544444555555555555555555554433
No 199
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.0091 Score=58.18 Aligned_cols=182 Identities=16% Similarity=0.113 Sum_probs=119.3
Q ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHH
Q 007407 407 TYGVARSVLNKARKKLPKERAIWIAAAKLEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAI 486 (605)
Q Consensus 407 ~~e~A~~vL~~al~~~p~~~~iwi~~a~Le~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i 486 (605)
.|++|-.+|.+|-..+.- ..+...|-..|-++-+..-+.+-.++...-...|..|.+.+++.+|...
T Consensus 29 k~eeAadl~~~Aan~ykl-------------aK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~~~~eAv~c 95 (288)
T KOG1586|consen 29 KYEEAAELYERAANMYKL-------------AKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKVDPEEAVNC 95 (288)
T ss_pred chHHHHHHHHHHHHHHHH-------------HHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhccChHHHHHH
Confidence 678888887777544321 1112222223333322222222222333334445566677789999999
Q ss_pred HHHHHHhCCCchh----hHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhcCCCH------HHHHHHHHHHHHcCCHHHHH
Q 007407 487 ITNTIEIGVDEED----KKRTWVADVEECKKR-GSIETARAIFSPACTVFLTKK------NIWLKAAQLEKSYGCRESLI 555 (605)
Q Consensus 487 ~~~al~~~p~~~~----~~~~~~~~a~~~~~~-g~~~~A~~i~~~al~~~P~~~------~~w~~la~l~~~~g~~e~A~ 555 (605)
++.+|.+..+ .. -....+..+++|... .+++.|+..|+.+-+.+.... ..++..+.+-.+.+++..|+
T Consensus 96 L~~aieIyt~-~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai 174 (288)
T KOG1586|consen 96 LEKAIEIYTD-MGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAI 174 (288)
T ss_pred HHHHHHHHHh-hhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999887543 11 123355778888775 899999999999999886542 45667777888889999999
Q ss_pred HHHHHHHHhCCCCHHH-------HHHHHHHHHHcCChHHHHHHHHHHHHHCCCC
Q 007407 556 ALLRKAVTYCPQAEVL-------WLMGAKEKWLAGDVPATRDILQEAYAAIPNS 602 (605)
Q Consensus 556 ~~lekAl~~~P~~~~l-------~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~ 602 (605)
.+|++.....-+++.+ ++..|.++....|.-.+...|++-.+.+|.-
T Consensus 175 ~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F 228 (288)
T KOG1586|consen 175 DIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAF 228 (288)
T ss_pred HHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcc
Confidence 9999998876555332 2333444555689999999999999999974
No 200
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.52 E-value=0.0092 Score=56.24 Aligned_cols=148 Identities=9% Similarity=0.000 Sum_probs=112.2
Q ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHH
Q 007407 407 TYGVARSVLNKARKKLPKERAIWIAAAK-LEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVA 485 (605)
Q Consensus 407 ~~e~A~~vL~~al~~~p~~~~iwi~~a~-Le~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~ 485 (605)
+++....-..+.+..-|+... .+.++. +-+.|+..++...|++++.-.- ..+..+.+..|......+.+..|..
T Consensus 71 dP~R~~Rea~~~~~~ApTvqn-r~rLa~al~elGr~~EA~~hy~qalsG~f----A~d~a~lLglA~Aqfa~~~~A~a~~ 145 (251)
T COG4700 71 DPERHLREATEELAIAPTVQN-RYRLANALAELGRYHEAVPHYQQALSGIF----AHDAAMLLGLAQAQFAIQEFAAAQQ 145 (251)
T ss_pred ChhHHHHHHHHHHhhchhHHH-HHHHHHHHHHhhhhhhhHHHHHHHhcccc----CCCHHHHHHHHHHHHhhccHHHHHH
Confidence 455554444555555677544 445554 4489999999999999986432 2477888999999989999999999
Q ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007407 486 IITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKA 561 (605)
Q Consensus 486 i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekA 561 (605)
.++.++..+|. -..+...+.++..+...|.++.|+..|+.++...|+. ..-..++.++.++|+..++..-|...
T Consensus 146 tLe~l~e~~pa-~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 146 TLEDLMEYNPA-FRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHhhcCCc-cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 99999998775 2245567788999999999999999999999999875 55566788888999776665544433
No 201
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.52 E-value=0.00049 Score=64.54 Aligned_cols=19 Identities=26% Similarity=0.363 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHHHHCCCCC
Q 007407 585 VPATRDILQEAYAAIPNSE 603 (605)
Q Consensus 585 ~~~Ar~il~kAl~~~P~~~ 603 (605)
+++|..+|++|...+|+|+
T Consensus 96 F~kA~~~FqkAv~~~P~ne 114 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNE 114 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-H
T ss_pred HHHHHHHHHHHHhcCCCcH
Confidence 4455555556666666553
No 202
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.51 E-value=0.026 Score=56.08 Aligned_cols=174 Identities=12% Similarity=0.032 Sum_probs=100.4
Q ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHH
Q 007407 426 RAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTW 504 (605)
Q Consensus 426 ~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~ 504 (605)
+..|..-+.-+ +.|++++|...|+......|-. +......+..+-.+-+.+.++.|+..+.+-+...|.+++-..++
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s--~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFS--PYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 34455555444 6677777777777776666554 23455566666666667777777777777777776644322222
Q ss_pred HHHHHHHHH--------cCCHHHHHHHHHHHHHhcCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHH
Q 007407 505 VADVEECKK--------RGSIETARAIFSPACTVFLTKKNIW-----------------LKAAQLEKSYGCRESLIALLR 559 (605)
Q Consensus 505 ~~~a~~~~~--------~g~~~~A~~i~~~al~~~P~~~~~w-----------------~~la~l~~~~g~~e~A~~~le 559 (605)
+..+..... ......|..-|+..+..+|++.-+- +..|.+|.+.|.+..|...++
T Consensus 112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~ 191 (254)
T COG4105 112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFE 191 (254)
T ss_pred HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 222222211 1123356666777777777753111 123566667788888888888
Q ss_pred HHHHhCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHHC-CCC
Q 007407 560 KAVTYCPQAE---VLWLMGAKEKWLAGDVPATRDILQEAYAAI-PNS 602 (605)
Q Consensus 560 kAl~~~P~~~---~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~-P~~ 602 (605)
..++..|+.. ..+..+...+...|-.++|... .+.+..| |++
T Consensus 192 ~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~-~~vl~~N~p~s 237 (254)
T COG4105 192 EVLENYPDTSAVREALARLEEAYYALGLTDEAKKT-AKVLGANYPDS 237 (254)
T ss_pred HHHhccccccchHHHHHHHHHHHHHhCChHHHHHH-HHHHHhcCCCC
Confidence 8888776542 3333444456667766665543 4445555 444
No 203
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.51 E-value=0.0027 Score=63.47 Aligned_cols=103 Identities=10% Similarity=0.063 Sum_probs=62.5
Q ss_pred HHcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcC
Q 007407 436 EANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRG 515 (605)
Q Consensus 436 e~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g 515 (605)
...|++..|...|..-++.+|......+...|+-. .+..+|++..|..+|..++...|..+.-++.++.++....+.|
T Consensus 152 ~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe--~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~ 229 (262)
T COG1729 152 YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGE--SLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLG 229 (262)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHH--HHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhc
Confidence 35556666666666666666655444455555543 3444566666666666666666554445566666666666666
Q ss_pred CHHHHHHHHHHHHHhcCCCHHHHHH
Q 007407 516 SIETARAIFSPACTVFLTKKNIWLK 540 (605)
Q Consensus 516 ~~~~A~~i~~~al~~~P~~~~~w~~ 540 (605)
+.++|+.+|+++++.+|+...+-..
T Consensus 230 ~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 230 NTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 6666666666666666666554443
No 204
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=97.50 E-value=6.6e-05 Score=75.24 Aligned_cols=91 Identities=13% Similarity=0.212 Sum_probs=76.3
Q ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhC
Q 007407 487 ITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLE-KSYGCRESLIALLRKAVTYC 565 (605)
Q Consensus 487 ~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~-~~~g~~e~A~~~lekAl~~~ 565 (605)
|.++..-.|. ++.+|.+++......+.+.+...+|.+++..+|++..+|...+..+ ..+++++.++.+|.+++..+
T Consensus 96 ~~R~tnkff~---D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N 172 (435)
T COG5191 96 LYRSTNKFFN---DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMN 172 (435)
T ss_pred eehhhhcCCC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccC
Confidence 3334344555 7889999999888899999999999999999999999999855554 46899999999999999999
Q ss_pred CCCHHHHHHHHHHHH
Q 007407 566 PQAEVLWLMGAKEKW 580 (605)
Q Consensus 566 P~~~~l~l~~a~~~~ 580 (605)
|++|.+|..|-+++.
T Consensus 173 ~~~p~iw~eyfr~El 187 (435)
T COG5191 173 SRSPRIWIEYFRMEL 187 (435)
T ss_pred CCCchHHHHHHHHHH
Confidence 999999999988654
No 205
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.47 E-value=0.0027 Score=60.34 Aligned_cols=108 Identities=14% Similarity=-0.000 Sum_probs=81.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCchh--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 007407 469 KEAEVADRAGSVVTCVAIITNTIEIGVDEED--KKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEK 546 (605)
Q Consensus 469 ~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~--~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~ 546 (605)
..+..+-..|.++.|..-|..+|...|.-+. +.-.|...|...+..+..+.|+.-+.++++++|.+..++...|.+|.
T Consensus 100 ~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 100 KEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE 179 (271)
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence 3445555667778888888888887765221 33345667777888888888888888888888888888888888888
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 007407 547 SYGCRESLIALLRKAVTYCPQAEVLWLMGA 576 (605)
Q Consensus 547 ~~g~~e~A~~~lekAl~~~P~~~~l~l~~a 576 (605)
+...+++|+.-|++.++.+|....+--..+
T Consensus 180 k~ek~eealeDyKki~E~dPs~~ear~~i~ 209 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPSRREAREAIA 209 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 888888888888888888886654433333
No 206
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.46 E-value=0.36 Score=55.43 Aligned_cols=286 Identities=14% Similarity=0.081 Sum_probs=149.4
Q ss_pred hhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcCchhHHHHHHHH
Q 007407 262 SELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLARPDEAKSVVAKG 341 (605)
Q Consensus 262 ~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~~~~Ak~~l~~a 341 (605)
...+++++|...+.++++.+|+.+-+.+.-|-...+.|+.+.|..+++ ++..-+.+.+.-++....
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le-~~~~~~~~D~~tLq~l~~------------- 85 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLE-ALYGLKGTDDLTLQFLQN------------- 85 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHh-hhccCCCCchHHHHHHHH-------------
Confidence 356779999999999999999999888888888899999999996665 444333333332222111
Q ss_pred HhhCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH----HHHHhhcHHHHHHHHHH
Q 007407 342 VRQIPKSANKIRALRMALDEIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWL----ALVRLETYGVARSVLNK 417 (605)
Q Consensus 342 l~~~P~s~~a~~vl~kAle~~P~~~~lw~~l~~le~~e~A~~~l~rAl~~~P~~~~lw~----aLa~le~~e~A~~vL~~ 417 (605)
.+.+++..++|..+|++++...|. .++.. ++++.+.|..-+++=-+
T Consensus 86 -----------------------------~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~ 135 (932)
T KOG2053|consen 86 -----------------------------VYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQ 135 (932)
T ss_pred -----------------------------HHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122233344444444555444444 22221 22333333222222112
Q ss_pred HHHhCCCCHH-HHHHHHH-HH-HcCC--------HHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHH
Q 007407 418 ARKKLPKERA-IWIAAAK-LE-ANGN--------TSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAI 486 (605)
Q Consensus 418 al~~~p~~~~-iwi~~a~-Le-~~g~--------~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i 486 (605)
.-+..|..+- .|....- +. ..+. ..-|.+.+++.++.- |..........+-.+++.+|...+|..+
T Consensus 136 LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~---gk~~s~aE~~Lyl~iL~~~~k~~eal~~ 212 (932)
T KOG2053|consen 136 LYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKK---GKIESEAEIILYLLILELQGKYQEALEF 212 (932)
T ss_pred HHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccC---CccchHHHHHHHHHHHHhcccHHHHHHH
Confidence 2223343322 2322221 11 1110 111223333333321 2222344445556677888889999988
Q ss_pred HHHHHHh-CCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH----HHH------HHHHcCC---HH
Q 007407 487 ITNTIEI-GVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLK----AAQ------LEKSYGC---RE 552 (605)
Q Consensus 487 ~~~al~~-~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~----la~------l~~~~g~---~e 552 (605)
+...+.. .+.. +...-..-.+++...+++.+-..+..+++...+++..++.. +.. ....++. .+
T Consensus 213 l~~~la~~l~~~--~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~ 290 (932)
T KOG2053|consen 213 LAITLAEKLTSA--NLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLD 290 (932)
T ss_pred HHHHHHHhcccc--chHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcchHHHHHHHHHHHHhcccccchhhhhhhhhHH
Confidence 8555442 2221 23333344566777888999999999999999987222221 111 1112222 23
Q ss_pred HHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHH
Q 007407 553 SLIALLRKAVTYCPQAE-VLWLMGAKEKWLAGDVPATRDILQEAY 596 (605)
Q Consensus 553 ~A~~~lekAl~~~P~~~-~l~l~~a~~~~~~gd~~~Ar~il~kAl 596 (605)
...+..++.+......| -+|+.+-+-+..-|+.+++..+|-+-+
T Consensus 291 ~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kf 335 (932)
T KOG2053|consen 291 ECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKKF 335 (932)
T ss_pred HHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHHh
Confidence 33333333333322223 345555554556788888887776644
No 207
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.43 E-value=0.00048 Score=70.05 Aligned_cols=109 Identities=11% Similarity=0.002 Sum_probs=84.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 007407 468 MKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKS 547 (605)
Q Consensus 468 l~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~ 547 (605)
...+..+-++|.+++|+.+|.+.|..+|. ++-++...|..|.+...|..|..-|..|+.++-.+..+|...+..-..
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~---NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~ 177 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPH---NPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARES 177 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCC---CccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34455666777788888888888888876 667777888888888888888888888888887788888888888888
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007407 548 YGCRESLIALLRKAVTYCPQAEVLWLMGAKEK 579 (605)
Q Consensus 548 ~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~ 579 (605)
.|+..+|.+-++.+|.+.|++-.+--.++.+.
T Consensus 178 Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~ 209 (536)
T KOG4648|consen 178 LGNNMEAKKDCETVLALEPKNIELKKSLARIN 209 (536)
T ss_pred HhhHHHHHHhHHHHHhhCcccHHHHHHHHHhc
Confidence 88888888888888888888776666665543
No 208
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.41 E-value=0.018 Score=56.58 Aligned_cols=192 Identities=12% Similarity=0.044 Sum_probs=118.9
Q ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHH------HHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCC
Q 007407 407 TYGVARSVLNKARKKLPKERAIWIAA------AKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGS 479 (605)
Q Consensus 407 ~~e~A~~vL~~al~~~p~~~~iwi~~------a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~ 479 (605)
.|+.|...|.+|.+...++...|..+ +.|. ....+.++..+|++|...+..+|-+.....-+..|......-+
T Consensus 46 ~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~ 125 (308)
T KOG1585|consen 46 KFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVK 125 (308)
T ss_pred cHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCC
Confidence 45666666666665555544433332 1222 3334667777888887777777766666666666766666778
Q ss_pred HHHHHHHHHHHHHhCCCch-h--hHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HhcCCCHHHHHHHHHHHHHcCC
Q 007407 480 VVTCVAIITNTIEIGVDEE-D--KKRTWVADVEECKKRGSIETARAIFSPAC------TVFLTKKNIWLKAAQLEKSYGC 550 (605)
Q Consensus 480 ~~~A~~i~~~al~~~p~~~-~--~~~~~~~~a~~~~~~g~~~~A~~i~~~al------~~~P~~~~~w~~la~l~~~~g~ 550 (605)
++.|..+|++++.+--++. + -...+-..+..+++...+++|-..+.+-. ...|.....+.....++.-..+
T Consensus 126 Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~D 205 (308)
T KOG1585|consen 126 PDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHD 205 (308)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHH
Confidence 9999999999888643311 1 22334455677778778887766554322 2234445556666667777778
Q ss_pred HHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHC
Q 007407 551 RESLIALLRKAVTYC----PQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAI 599 (605)
Q Consensus 551 ~e~A~~~lekAl~~~----P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~ 599 (605)
+..|.++|+...+.. |+.....-.+-.. +..||++.+..++...+-.+
T Consensus 206 yv~aekc~r~~~qip~f~~sed~r~lenLL~a-yd~gD~E~~~kvl~sp~~r~ 257 (308)
T KOG1585|consen 206 YVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA-YDEGDIEEIKKVLSSPTVRN 257 (308)
T ss_pred HHHHHHHhcchhcCccccChHHHHHHHHHHHH-hccCCHHHHHHHHcChHhhh
Confidence 888999988866542 2333333333333 36889999888887655443
No 209
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.41 E-value=0.0014 Score=61.46 Aligned_cols=93 Identities=14% Similarity=-0.030 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 007407 480 VVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKR----------GSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYG 549 (605)
Q Consensus 480 ~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~----------g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g 549 (605)
++.|+..++.....+|.+ .+.++.++..+... .-+++|+.-|++||.++|+...++..+|..+..++
T Consensus 7 FE~ark~aea~y~~nP~D---adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLD---ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT----HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHh---HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 567888888888888884 44444444333322 34678899999999999999999999999998664
Q ss_pred C-----------HHHHHHHHHHHHHhCCCCHHHHHHH
Q 007407 550 C-----------RESLIALLRKAVTYCPQAEVLWLMG 575 (605)
Q Consensus 550 ~-----------~e~A~~~lekAl~~~P~~~~l~l~~ 575 (605)
. ++.|...|++|+...|.++..+..+
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksL 120 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSL 120 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 3 6788889999999999987766554
No 210
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.38 E-value=0.002 Score=61.18 Aligned_cols=110 Identities=10% Similarity=0.054 Sum_probs=84.7
Q ss_pred HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCC
Q 007407 437 ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGS 516 (605)
Q Consensus 437 ~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~ 516 (605)
.+|++.+|.+-|..||..+|...-....-.+...|....+.+..+.|+.-..++|.++|. +..++..+|.+|.+...
T Consensus 107 ~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt---y~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 107 KNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT---YEKALERRAEAYEKMEK 183 (271)
T ss_pred hcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch---hHHHHHHHHHHHHhhhh
Confidence 566777777777777777765432223334555666677778888888888999999998 78888888999999999
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 007407 517 IETARAIFSPACTVFLTKKNIWLKAAQLEKSYG 549 (605)
Q Consensus 517 ~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g 549 (605)
+++|+.-|+++++.+|....+-...+.+.-+..
T Consensus 184 ~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ 216 (271)
T KOG4234|consen 184 YEEALEDYKKILESDPSRREAREAIARLPPKIN 216 (271)
T ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHH
Confidence 999999999999999998777766666554433
No 211
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.35 E-value=0.086 Score=55.45 Aligned_cols=139 Identities=15% Similarity=0.137 Sum_probs=109.8
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hcCC-------
Q 007407 463 DRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEE-DKKRTWVADVEECKKRGSIETARAIFSPACT-VFLT------- 533 (605)
Q Consensus 463 ~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~-~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~-~~P~------- 533 (605)
....|+..|..+.+.|.+..|...+.++...++... ..+.+.+..+.++...|+..+|...++..+. ....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 457899999999999999999999999988664321 2567788899999999999999999998888 2111
Q ss_pred --------------------------CHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 007407 534 --------------------------KKNIWLKAAQLEKSY------GCRESLIALLRKAVTYCPQAEVLWLMGAKEKWL 581 (605)
Q Consensus 534 --------------------------~~~~w~~la~l~~~~------g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~ 581 (605)
...++..+|...... +..+.+.+.|+.|+..+|+....|..+|..+.+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 225 AELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDK 304 (352)
T ss_pred HHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHH
Confidence 124566677777676 788999999999999999999999999996543
Q ss_pred c----C-------------ChHHHHHHHHHHHHHCCC
Q 007407 582 A----G-------------DVPATRDILQEAYAAIPN 601 (605)
Q Consensus 582 ~----g-------------d~~~Ar~il~kAl~~~P~ 601 (605)
. . -...|...|-+|+...|+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 305 LLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 1 1 113478888888888776
No 212
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.35 E-value=0.47 Score=54.66 Aligned_cols=307 Identities=16% Similarity=0.091 Sum_probs=171.8
Q ss_pred HHHHHHHHhCCC------ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhh-CCCCHHHHHHHHhhcCc-hhHHHHHHHHHh
Q 007407 272 KIVRAVTKNSPK------KPLGWIQAARLEELANEEAAARKLITKGCNM-CPKNEDVWLEACRLARP-DEAKSVVAKGVR 343 (605)
Q Consensus 272 ~ll~~al~~~P~------~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~-~P~~~~lwle~a~L~~~-~~Ak~~l~~al~ 343 (605)
.+|...+...|. -.+...+++.+....|.+.+|+... |.. .|.-.--.++..-.... ......+...+.
T Consensus 328 ~LFaeFL~~r~~~~~~~~~~~lH~~Aa~w~~~~g~~~eAI~hA---laA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~ 404 (894)
T COG2909 328 HLFAEFLRQRLQRELAARLKELHRAAAEWFAEHGLPSEAIDHA---LAAGDPEMAADLLEQLEWQLFNGSELSLLLAWLK 404 (894)
T ss_pred HHHHHHHHhhhccccCCchhHHHHHHHHHHHhCCChHHHHHHH---HhCCCHHHHHHHHHhhhhhhhcccchHHHHHHHH
Confidence 345555554433 3678888888888888888876443 432 22211111111111001 123344444455
Q ss_pred hCCCcHHHHHHHHHHHHhCCCcH--HHHHHHHHhCCHHHHHHHHHHHHHhCCC-----------CHHHHHHHHHh--hcH
Q 007407 344 QIPKSANKIRALRMALDEIPDSV--RLWKALVEISSEEEARILLHRAVECCPL-----------DVELWLALVRL--ETY 408 (605)
Q Consensus 344 ~~P~s~~a~~vl~kAle~~P~~~--~lw~~l~~le~~e~A~~~l~rAl~~~P~-----------~~~lw~aLa~l--e~~ 408 (605)
..|.+ .+...|.-+ ..|..+.+ ..+.+|..++.++-...|. ...+..+.+.+ +++
T Consensus 405 ~lP~~---------~l~~~P~Lvll~aW~~~s~-~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~ 474 (894)
T COG2909 405 ALPAE---------LLASTPRLVLLQAWLLASQ-HRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDP 474 (894)
T ss_pred hCCHH---------HHhhCchHHHHHHHHHHHc-cChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCH
Confidence 55544 223333322 23444332 3678888888887776665 11222222233 367
Q ss_pred HHHHHHHHHHHHhCCCCH-----HHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHH--HHHHHHHcCCH
Q 007407 409 GVARSVLNKARKKLPKER-----AIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMK--EAEVADRAGSV 480 (605)
Q Consensus 409 e~A~~vL~~al~~~p~~~-----~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~--~A~~~e~~g~~ 480 (605)
+.|.++.+.++...|.+. -.....+... -.|++.+|..++..+.+.....++ .....|.. .+.+++.+|.
T Consensus 475 e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~-~~l~~~~~~~~s~il~~qGq- 552 (894)
T COG2909 475 EEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDV-YHLALWSLLQQSEILEAQGQ- 552 (894)
T ss_pred HHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHccc-HHHHHHHHHHHHHHHHHhhH-
Confidence 899999999999998753 2344455555 789999999999998877655433 23456654 4788888893
Q ss_pred HHHHHHHHHHHH--------hCCCchhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhcCCCHHHHH---HHHHHHHHc
Q 007407 481 VTCVAIITNTIE--------IGVDEEDKKRTWVADVEECK-KRGSIETARAIFSPACTVFLTKKNIWL---KAAQLEKSY 548 (605)
Q Consensus 481 ~~A~~i~~~al~--------~~p~~~~~~~~~~~~a~~~~-~~g~~~~A~~i~~~al~~~P~~~~~w~---~la~l~~~~ 548 (605)
.+.+.-..+.. ..|-..--..++......+. -.+...+|+.-++-....-|.....|. .++.++.-.
T Consensus 553 -~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~ 631 (894)
T COG2909 553 -VARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLR 631 (894)
T ss_pred -HHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhc
Confidence 33322222211 11110001111111111111 123334555555555555566554444 578888999
Q ss_pred CCHHHHHHHHHHHHHhC--CCCHHHHHHHHH----HHHH-cCChHHHHHHHHH
Q 007407 549 GCRESLIALLRKAVTYC--PQAEVLWLMGAK----EKWL-AGDVPATRDILQE 594 (605)
Q Consensus 549 g~~e~A~~~lekAl~~~--P~~~~l~l~~a~----~~~~-~gd~~~Ar~il~k 594 (605)
|+.++|...+....... ++....|...+. .+|. .||...|...+.+
T Consensus 632 Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 632 GDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 99999999999887664 333444443332 5675 8999999999888
No 213
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.32 E-value=0.00032 Score=56.93 Aligned_cols=63 Identities=14% Similarity=0.096 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---C-CC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007407 536 NIWLKAAQLEKSYGCRESLIALLRKAVTYC---P-QA---EVLWLMGAKEKWLAGDVPATRDILQEAYAA 598 (605)
Q Consensus 536 ~~w~~la~l~~~~g~~e~A~~~lekAl~~~---P-~~---~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~ 598 (605)
.++..+|.++...|++++|+.+|++|+... + ++ ..++..+|.++...|++++|...+++|+++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 445555555555555555555555555431 1 11 223444555555555555555555555543
No 214
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.31 E-value=0.0095 Score=52.93 Aligned_cols=94 Identities=12% Similarity=0.126 Sum_probs=80.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC----CHHHHHHHHHHH
Q 007407 470 EAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLT----KKNIWLKAAQLE 545 (605)
Q Consensus 470 ~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~----~~~~w~~la~l~ 545 (605)
.+..+...|..++|.+.|.++|..-|+ +.++|.+.++.+.-+|+.++|..-+.+|+++.-. .-..+...|.+|
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~P~---raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLAPE---RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhccc---chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 344555678899999999999999998 9999999999999999999999999999998633 246677889999
Q ss_pred HHcCCHHHHHHHHHHHHHhCC
Q 007407 546 KSYGCRESLIALLRKAVTYCP 566 (605)
Q Consensus 546 ~~~g~~e~A~~~lekAl~~~P 566 (605)
...|+.+.|+.-|+.|-++-.
T Consensus 126 Rl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHhCchHHHHHhHHHHHHhCC
Confidence 999999999999999976643
No 215
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.31 E-value=0.27 Score=51.59 Aligned_cols=121 Identities=20% Similarity=0.120 Sum_probs=85.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhcCCCHHHHHHHHHHH
Q 007407 469 KEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPAC---TVFLTKKNIWLKAAQLE 545 (605)
Q Consensus 469 ~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al---~~~P~~~~~w~~la~l~ 545 (605)
..|..+.+.|+.-++-.|++.+.+.+|. +.+|..+. ..+.| +++..-++++- .+-||+....+..+..-
T Consensus 268 ~AAralf~d~~~rKg~~ilE~aWK~ePH----P~ia~lY~--~ar~g--dta~dRlkRa~~L~slk~nnaes~~~va~aA 339 (531)
T COG3898 268 VAARALFRDGNLRKGSKILETAWKAEPH----PDIALLYV--RARSG--DTALDRLKRAKKLESLKPNNAESSLAVAEAA 339 (531)
T ss_pred HHHHHHHhccchhhhhhHHHHHHhcCCC----hHHHHHHH--HhcCC--CcHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 3455566677777777777777777765 44443322 23444 34444444433 34588888888888888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHH
Q 007407 546 KSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWL-AGDVPATRDILQEAYAA 598 (605)
Q Consensus 546 ~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~-~gd~~~Ar~il~kAl~~ 598 (605)
...|++..|+.--+.+....|. +.+++.++.+... .||-.++|..+.++++.
T Consensus 340 lda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 340 LDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 8888999898888888888886 5566777777665 69999999999999863
No 216
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.30 E-value=0.016 Score=62.40 Aligned_cols=136 Identities=13% Similarity=0.066 Sum_probs=67.0
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHh--hcHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHcCCHHHHHHHHHHHHH
Q 007407 377 SEEEARILLHRAVECCPLDVELWLALVRL--ETYGVARSVLNKARKKLPKERAIWIAAAKL-EANGNTSMVGKIIERGIR 453 (605)
Q Consensus 377 ~~e~A~~~l~rAl~~~P~~~~lw~aLa~l--e~~e~A~~vL~~al~~~p~~~~iwi~~a~L-e~~g~~~~a~~i~~~al~ 453 (605)
++..-+++-.+|++++|++.++|..|+.= ....+|..+|++|++....... .... +..|..-+. ...+-..
T Consensus 183 np~aRIkaA~eALei~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg----~s~~~~~~g~~~e~--~~~Rdt~ 256 (539)
T PF04184_consen 183 NPQARIKAAKEALEINPDCADAYILLAEEEASTIVEAEELLRQAVKAGEASLG----KSQFLQHHGHFWEA--WHRRDTN 256 (539)
T ss_pred CHHHHHHHHHHHHHhhhhhhHHHhhcccccccCHHHHHHHHHHHHHHHHHhhc----hhhhhhcccchhhh--hhccccc
Confidence 55666667777888888888888777752 2456777777777764322100 0000 011110000 0000000
Q ss_pred HhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007407 454 ALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPA 527 (605)
Q Consensus 454 ~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~a 527 (605)
.-.-.-...|..+.+.|...+|.+.++..++..|. .++..+...+++.+...+.+.++..++.+-
T Consensus 257 --------~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~-~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 257 --------VLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPN-LDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred --------hhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCc-cchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 00011123445555556666666666666655443 224445555555555566666655555543
No 217
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.29 E-value=0.022 Score=57.32 Aligned_cols=167 Identities=14% Similarity=0.031 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHhCCCcHHHHH----HHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH----hhcHHHHHHHHHHHHHh
Q 007407 350 NKIRALRMALDEIPDSVRLWK----ALVEISSEEEARILLHRAVECCPLDVELWLALVR----LETYGVARSVLNKARKK 421 (605)
Q Consensus 350 ~a~~vl~kAle~~P~~~~lw~----~l~~le~~e~A~~~l~rAl~~~P~~~~lw~aLa~----le~~e~A~~vL~~al~~ 421 (605)
.+++.+..-.+..|.+..-.. .+....++..|-..|++.-...|+.....+-.++ ...+.+|..|+.....
T Consensus 28 DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D- 106 (459)
T KOG4340|consen 28 DAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLD- 106 (459)
T ss_pred HHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcC-
Confidence 456667777777786543222 3334447788888888888888887665554443 2356777777665432
Q ss_pred CCCCHHHHH-----HHHHHHHcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 007407 422 LPKERAIWI-----AAAKLEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVD 496 (605)
Q Consensus 422 ~p~~~~iwi-----~~a~Le~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~ 496 (605)
++.+.. ..+-.++.+++..+..++++ +|..+ +.......+-...+.|+++.|..-|+.++..+--
T Consensus 107 ---~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQ----lp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGy 176 (459)
T KOG4340|consen 107 ---NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQ----LPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGY 176 (459)
T ss_pred ---CHHHHHHHHHHHHHHhcccccCcchHHHHHh----ccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcCC
Confidence 222222 22222266676666665544 44322 3455666777777888888888888888887543
Q ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007407 497 EEDKKRTWVADVEECKKRGSIETARAIFSPACTV 530 (605)
Q Consensus 497 ~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~ 530 (605)
++-+-+..|....+.++++.|.....++++.
T Consensus 177 ---qpllAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 177 ---QPLLAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred ---CchhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 3334445566677888888888877666654
No 218
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.28 E-value=0.00092 Score=54.20 Aligned_cols=67 Identities=13% Similarity=0.099 Sum_probs=55.1
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---C----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 007407 499 DKKRTWVADVEECKKRGSIETARAIFSPACTVF---L----TKKNIWLKAAQLEKSYGCRESLIALLRKAVTYC 565 (605)
Q Consensus 499 ~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~---P----~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~ 565 (605)
+-..++...+..+...|++++|+..|++++.+. + .-..++..+|.++...|++++|+++|++|++.+
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 356678888999999999999999999998662 2 235678889999999999999999999998764
No 219
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.22 E-value=0.002 Score=61.94 Aligned_cols=100 Identities=12% Similarity=-0.023 Sum_probs=50.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 007407 467 WMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEK 546 (605)
Q Consensus 467 wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~ 546 (605)
....+..+...|-..-|+--+..++.+.|. -+.++.-++-.+...|+++.|...|...++++|.+.-+....|....
T Consensus 68 ~fERGvlYDSlGL~~LAR~DftQaLai~P~---m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y 144 (297)
T COG4785 68 LFERGVLYDSLGLRALARNDFSQALAIRPD---MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 144 (297)
T ss_pred HHHhcchhhhhhHHHHHhhhhhhhhhcCCC---cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence 334444444444444455555555555554 34444444444455555555555555555555555555555444444
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCH
Q 007407 547 SYGCRESLIALLRKAVTYCPQAE 569 (605)
Q Consensus 547 ~~g~~e~A~~~lekAl~~~P~~~ 569 (605)
--|++.-|.+-+.+--+.+|++|
T Consensus 145 Y~gR~~LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 145 YGGRYKLAQDDLLAFYQDDPNDP 167 (297)
T ss_pred ecCchHhhHHHHHHHHhcCCCCh
Confidence 44555555555555555555543
No 220
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.22 E-value=0.017 Score=62.11 Aligned_cols=147 Identities=17% Similarity=0.140 Sum_probs=93.0
Q ss_pred hHHHHHHHHHhhCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHhC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHhhcHHH
Q 007407 333 EAKSVVAKGVRQIPKSANKIRALRMALDEIPDSVRLWKALVEIS--SEEEARILLHRAVECCPLDVELWLALVRLETYGV 410 (605)
Q Consensus 333 ~Ak~~l~~al~~~P~s~~a~~vl~kAle~~P~~~~lw~~l~~le--~~e~A~~~l~rAl~~~P~~~~lw~aLa~le~~e~ 410 (605)
.|..++.+|-+- ++.....+.-++||+..|+....|..+++-+ ...+|..+|++|++....+..--. ..+...
T Consensus 170 ~Aq~IMq~AWRE-Rnp~aRIkaA~eALei~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~---~~~~~g- 244 (539)
T PF04184_consen 170 PAQEIMQKAWRE-RNPQARIKAAKEALEINPDCADAYILLAEEEASTIVEAEELLRQAVKAGEASLGKSQ---FLQHHG- 244 (539)
T ss_pred HHHHHHHHHHhc-CCHHHHHHHHHHHHHhhhhhhHHHhhcccccccCHHHHHHHHHHHHHHHHHhhchhh---hhhccc-
Confidence 455666666532 1223456778899999999999999888754 568999999999986433211000 000000
Q ss_pred HHHHHHHHHHhCCCCHHHHH--HHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHH
Q 007407 411 ARSVLNKARKKLPKERAIWI--AAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAII 487 (605)
Q Consensus 411 A~~vL~~al~~~p~~~~iwi--~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~ 487 (605)
-.-.....-++++-+++ .+|.+- +.|..++|++.|...++..|.. ....+.....+.+...+.+.++.+++
T Consensus 245 ---~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~---~~l~IrenLie~LLelq~Yad~q~lL 318 (539)
T PF04184_consen 245 ---HFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNL---DNLNIRENLIEALLELQAYADVQALL 318 (539)
T ss_pred ---chhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc---chhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 00011111233333333 355666 8899999999999999888752 23455666667777788888888888
Q ss_pred HHH
Q 007407 488 TNT 490 (605)
Q Consensus 488 ~~a 490 (605)
.+.
T Consensus 319 ~kY 321 (539)
T PF04184_consen 319 AKY 321 (539)
T ss_pred HHh
Confidence 775
No 221
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.22 E-value=0.21 Score=52.53 Aligned_cols=49 Identities=10% Similarity=0.093 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 007407 500 KKRTWVADVEECKKR------GSIETARAIFSPACTVFLTKKNIWLKAAQLEKSY 548 (605)
Q Consensus 500 ~~~~~~~~a~~~~~~------g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~ 548 (605)
...+++.++...... +..+++...|..+++..|+....|+.+|.++.+.
T Consensus 251 ~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 251 KAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL 305 (352)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence 345566667766666 8999999999999999999999999999888643
No 222
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.19 E-value=0.053 Score=52.43 Aligned_cols=126 Identities=17% Similarity=0.053 Sum_probs=89.4
Q ss_pred hhhhhcccchhhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHH-hhcC
Q 007407 252 RMNDLKITTNSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEAC-RLAR 330 (605)
Q Consensus 252 ~L~~~~~~~~~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a-~L~~ 330 (605)
.|....+..+...|--.-||.-|.+++.++|+-|..+..++-.....|+++.|...|.-.++.+|...-..+..+ .++-
T Consensus 66 ~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY 145 (297)
T COG4785 66 QLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 145 (297)
T ss_pred HHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeee
Confidence 344445555778888899999999999999999999999998889999999999999999999998764443321 2211
Q ss_pred chhHHHHHHHHHhhCCCcHHHHHHHHHHHHhCCCcH--HHHHHHHHhC-CHHHHHH-HHHHHHHh
Q 007407 331 PDEAKSVVAKGVRQIPKSANKIRALRMALDEIPDSV--RLWKALVEIS-SEEEARI-LLHRAVEC 391 (605)
Q Consensus 331 ~~~Ak~~l~~al~~~P~s~~a~~vl~kAle~~P~~~--~lw~~l~~le-~~e~A~~-~l~rAl~~ 391 (605)
... -.-|.+-+.+--+..|+++ .+|.-+++.. ++.+|.. +.+|+-..
T Consensus 146 ~gR--------------~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~ 196 (297)
T COG4785 146 GGR--------------YKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKS 196 (297)
T ss_pred cCc--------------hHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhc
Confidence 100 0112233334446677765 5898888877 7777776 44566543
No 223
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.16 E-value=0.0017 Score=66.24 Aligned_cols=100 Identities=13% Similarity=0.006 Sum_probs=76.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 007407 505 VADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGD 584 (605)
Q Consensus 505 ~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd 584 (605)
-..+..|..+|.|++|+.+|.+++..+|.++..+...|..|.+.+.+..|..-...|+.++--...+|-..+..-...|+
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 34566677788888888888888888888888888888888888888888888888887775556666666666666788
Q ss_pred hHHHHHHHHHHHHHCCCCCC
Q 007407 585 VPATRDILQEAYAAIPNSEE 604 (605)
Q Consensus 585 ~~~Ar~il~kAl~~~P~~~~ 604 (605)
..+|.+-++.++.+.|++.+
T Consensus 181 ~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred HHHHHHhHHHHHhhCcccHH
Confidence 88888888888888887643
No 224
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.15 E-value=0.00047 Score=46.76 Aligned_cols=32 Identities=19% Similarity=0.144 Sum_probs=17.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHH
Q 007407 524 FSPACTVFLTKKNIWLKAAQLEKSYGCRESLI 555 (605)
Q Consensus 524 ~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~ 555 (605)
|++|++.+|+++.+|+.+|.++...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45555555555555555555555555555543
No 225
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.13 E-value=0.00051 Score=46.57 Aligned_cols=34 Identities=18% Similarity=0.094 Sum_probs=31.7
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 007407 557 LLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRD 590 (605)
Q Consensus 557 ~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~ 590 (605)
+|++||+.+|+++.+|..+|.++...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4899999999999999999999999999999873
No 226
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.09 E-value=0.014 Score=53.44 Aligned_cols=110 Identities=17% Similarity=0.232 Sum_probs=63.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCc--hh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 007407 469 KEAEVADRAGSVVTCVAIITNTIEIGVDE--ED-KKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLE 545 (605)
Q Consensus 469 ~~A~~~e~~g~~~~A~~i~~~al~~~p~~--~~-~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~ 545 (605)
..+......|....+...+++++.....+ ++ ....|+.. .+..+... ...++..++..+
T Consensus 11 ~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~------------~r~~l~~~------~~~~~~~l~~~~ 72 (146)
T PF03704_consen 11 REARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEP------------ERERLREL------YLDALERLAEAL 72 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHH------------HHHHHHHH------HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHH------------HHHHHHHH------HHHHHHHHHHHH
Confidence 33555567788899999999999874331 11 11123321 12222222 124455566666
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 007407 546 KSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAY 596 (605)
Q Consensus 546 ~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl 596 (605)
...|+++.|..++++++..+|-++.+|..+...+...|+...|..+|.+..
T Consensus 73 ~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 73 LEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 677777777777777777777777777777777777777777777776654
No 227
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.07 E-value=0.0015 Score=43.75 Aligned_cols=33 Identities=15% Similarity=0.302 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCC
Q 007407 570 VLWLMGAKEKWLAGDVPATRDILQEAYAAIPNS 602 (605)
Q Consensus 570 ~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~ 602 (605)
.+|..+|.+++..|++++|+..|++|++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 456666666666667777777777777666664
No 228
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.002 Score=62.79 Aligned_cols=113 Identities=12% Similarity=-0.047 Sum_probs=86.0
Q ss_pred CHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007407 479 SVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALL 558 (605)
Q Consensus 479 ~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~l 558 (605)
.+..|...|.++|.++|. ....|.++|..+.+..+++.+..-+.+|+++.|+.....+.++....+...+++|+.++
T Consensus 25 ~y~~ai~~y~raI~~nP~---~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~L 101 (284)
T KOG4642|consen 25 RYDDAIDCYSRAICINPT---VASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVL 101 (284)
T ss_pred hhchHHHHHHHHHhcCCC---cchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHH
Confidence 356777888888888887 67788888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHhC-----CCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 007407 559 RKAVTYC-----PQAEVLWLMGAKEKWLAGDVPATRDILQE 594 (605)
Q Consensus 559 ekAl~~~-----P~~~~l~l~~a~~~~~~gd~~~Ar~il~k 594 (605)
++|..+. |--..+|..+-....+-=++.+++.+.++
T Consensus 102 qra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 102 QRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 8885442 22366777777766665566666665543
No 229
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.97 E-value=0.073 Score=52.99 Aligned_cols=141 Identities=11% Similarity=0.035 Sum_probs=111.2
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH---HH
Q 007407 463 DRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNI---WL 539 (605)
Q Consensus 463 ~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~---w~ 539 (605)
....|...+......|++.+|...|+.+....|-.+-...+.+..+..+.+.++++.|+...++-+..+|+++.+ ++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 567899999999999999999999999999988866678889999999999999999999999999999997644 22
Q ss_pred HHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCH---HH--------------HHHHHHHHHHcCChHHHHHHHHH
Q 007407 540 KAAQLEKSY--------GCRESLIALLRKAVTYCPQAE---VL--------------WLMGAKEKWLAGDVPATRDILQE 594 (605)
Q Consensus 540 ~la~l~~~~--------g~~e~A~~~lekAl~~~P~~~---~l--------------~l~~a~~~~~~gd~~~Ar~il~k 594 (605)
..|...... .-...|..-|+..|...|++. .+ =++.|+++.+.|.+-.|..-++.
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~ 192 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEE 192 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 223333211 113468888999999999772 11 12345678889999999999999
Q ss_pred HHHHCCCCC
Q 007407 595 AYAAIPNSE 603 (605)
Q Consensus 595 Al~~~P~~~ 603 (605)
.++--|+..
T Consensus 193 v~e~y~~t~ 201 (254)
T COG4105 193 VLENYPDTS 201 (254)
T ss_pred HHhcccccc
Confidence 998877643
No 230
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.93 E-value=0.26 Score=61.89 Aligned_cols=227 Identities=14% Similarity=0.153 Sum_probs=127.5
Q ss_pred hCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHH-HHH-HcCCHHHHHHHH
Q 007407 375 ISSEEEARILLHRAVECCPLDV----ELWLALVRLETYGVARSVLNKARKKLPKERAIWIAAA-KLE-ANGNTSMVGKII 448 (605)
Q Consensus 375 le~~e~A~~~l~rAl~~~P~~~----~lw~aLa~le~~e~A~~vL~~al~~~p~~~~iwi~~a-~Le-~~g~~~~a~~i~ 448 (605)
.++..+|...|++++...|+.. .+...+..++.+.......+-.....+....-|..++ +.+ ..++.+......
T Consensus 1462 ~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred hccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 3477888899999999888843 4444444455555555555544444444444455554 233 444433333221
Q ss_pred H-------------HHHHHhccCc-------ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------hCC
Q 007407 449 E-------------RGIRALQGEE-------VVIDRDTWMKEAEVADRAGSVVTCVAIITNTIE-------------IGV 495 (605)
Q Consensus 449 ~-------------~al~~~p~~~-------~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~-------------~~p 495 (605)
. +++-..+... +...++....-...+...|++..+..++-+... ..+
T Consensus 1542 ~~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~ 1621 (2382)
T KOG0890|consen 1542 SDRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVSY 1621 (2382)
T ss_pred hcccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Confidence 1 1111111100 001222233333334444444444443333211 111
Q ss_pred Cc-h-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hh--cCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 007407 496 DE-E-DKKRTWVADVEECKKRGSIETARAIFSPAC-TV--FLT----KKNIWLKAAQLEKSYGCRESLIALLRKAVTYCP 566 (605)
Q Consensus 496 ~~-~-~~~~~~~~~a~~~~~~g~~~~A~~i~~~al-~~--~P~----~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P 566 (605)
.+ . .+...|....+.-....++.+-+-.+++++ .. .|+ -..+|+..|++.+..|.++.|...+-+|.+..
T Consensus 1622 ~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r- 1700 (2382)
T KOG0890|consen 1622 DEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR- 1700 (2382)
T ss_pred cccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-
Confidence 11 0 122345544433222222333333334432 22 333 46899999999999999999999999888876
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHC-CCCC
Q 007407 567 QAEVLWLMGAKEKWLAGDVPATRDILQEAYAAI-PNSE 603 (605)
Q Consensus 567 ~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~-P~~~ 603 (605)
-+.+.++.|+.+|+.|+...|..+|++.++.+ |+++
T Consensus 1701 -~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~ 1737 (2382)
T KOG0890|consen 1701 -LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLH 1737 (2382)
T ss_pred -cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhccccc
Confidence 47899999999999999999999999999877 6543
No 231
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.017 Score=56.48 Aligned_cols=91 Identities=15% Similarity=0.079 Sum_probs=78.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 007407 508 VEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPA 587 (605)
Q Consensus 508 a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~ 587 (605)
+..|.....|.+|+..|.+|+.++|+..++|...|..+.+..+++.+..--.+|+++.|+.....++++........++.
T Consensus 17 gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 17 GNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred cccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 33444556788999999999999999999999999999999999999999999999999998899999998888888999
Q ss_pred HHHHHHHHHHH
Q 007407 588 TRDILQEAYAA 598 (605)
Q Consensus 588 Ar~il~kAl~~ 598 (605)
|..+|.+|+..
T Consensus 97 aI~~Lqra~sl 107 (284)
T KOG4642|consen 97 AIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHHH
Confidence 99999999654
No 232
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.86 E-value=0.038 Score=50.53 Aligned_cols=107 Identities=11% Similarity=0.131 Sum_probs=76.5
Q ss_pred HcCCHHHHHHHHHHHHHHhccCcccc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcC
Q 007407 437 ANGNTSMVGKIIERGIRALQGEEVVI-DRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRG 515 (605)
Q Consensus 437 ~~g~~~~a~~i~~~al~~~p~~~~~~-~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g 515 (605)
..|+...+...+.+++......-.+. ....|.... +..++.. ...+....+..+...|
T Consensus 18 ~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~------------r~~l~~~---------~~~~~~~l~~~~~~~~ 76 (146)
T PF03704_consen 18 RAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPE------------RERLREL---------YLDALERLAEALLEAG 76 (146)
T ss_dssp HTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHH------------HHHHHHH---------HHHHHHHHHHHHHHTT
T ss_pred HCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHH------------HHHHHHH---------HHHHHHHHHHHHHhcc
Confidence 67889999999999998876542222 122455332 1222222 3344556677888999
Q ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007407 516 SIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTY 564 (605)
Q Consensus 516 ~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~ 564 (605)
+++.|..++.+++..+|.+..+|..+..++...|+...|..+|++....
T Consensus 77 ~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 77 DYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp -HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988654
No 233
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.80 E-value=0.06 Score=53.65 Aligned_cols=129 Identities=12% Similarity=-0.014 Sum_probs=97.3
Q ss_pred HHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 007407 466 TWM-KEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQL 544 (605)
Q Consensus 466 ~wl-~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l 544 (605)
.|. .-|.+|...|+++.|..++.... +.+....-..++++..+++-|+..+++....+-+ .++..||..
T Consensus 109 i~~l~aa~i~~~~~~~deAl~~~~~~~--------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided--~tLtQLA~a 178 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDGDFDEALKALHLGE--------NLEAAALNVQILLKMHRFDLAEKELKKMQQIDED--ATLTQLAQA 178 (299)
T ss_pred HHHHHhhHHhhcCCChHHHHHHHhccc--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH--HHHHHHHHH
Confidence 444 45678888889999988776632 4444555566777888888999999888877543 333333333
Q ss_pred HHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCCC
Q 007407 545 EKS----YGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSEE 604 (605)
Q Consensus 545 ~~~----~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~~ 604 (605)
..+ .+++..|.-+|+..-..+|-.+.+....|.+....|++++|..+|+.|+...|++++
T Consensus 179 wv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpe 242 (299)
T KOG3081|consen 179 WVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPE 242 (299)
T ss_pred HHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHH
Confidence 332 346889999999999978767888888888888999999999999999999998864
No 234
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.69 E-value=0.0045 Score=41.31 Aligned_cols=33 Identities=24% Similarity=0.330 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 007407 536 NIWLKAAQLEKSYGCRESLIALLRKAVTYCPQA 568 (605)
Q Consensus 536 ~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~ 568 (605)
.+|+.+|.++...|++++|++.|++++.++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 567777777777777777777777777777764
No 235
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.49 E-value=0.0054 Score=41.11 Aligned_cols=31 Identities=16% Similarity=0.182 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCC
Q 007407 571 LWLMGAKEKWLAGDVPATRDILQEAYAAIPN 601 (605)
Q Consensus 571 l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~ 601 (605)
+|...|.++...|++++|...|++|++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4444455555555555555555555555554
No 236
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=96.47 E-value=0.9 Score=52.05 Aligned_cols=313 Identities=14% Similarity=0.094 Sum_probs=148.4
Q ss_pred HHHHHHHHHHHHHhCCCC----hHHHHHHHHHH-HHhcCHHHHHHHHHHHHhhCCC--CHHHHHHHHhhcCchhHHHHHH
Q 007407 267 ILKARKIVRAVTKNSPKK----PLGWIQAARLE-ELANEEAAARKLITKGCNMCPK--NEDVWLEACRLARPDEAKSVVA 339 (605)
Q Consensus 267 ~~kAr~ll~~al~~~P~~----~~~wia~Arle-~~~g~~~~Ar~ll~~~l~~~P~--~~~lwle~a~L~~~~~Ak~~l~ 339 (605)
+..|..+|+.+++..+-. ....+.+|.++ +...|++.|+..+++++..|.. -.++-+....+ +.
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~l---------l~ 107 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFL---------LA 107 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHH---------HH
Confidence 677889999998633322 23456677777 4789999999999999888843 33433322211 11
Q ss_pred HHHh-hCCCcHHHHHHHHHHHHhC---CCcHHHHH-HHHH------hCCHHHHHHHHHHHHHhC--CCCHHHHHHH----
Q 007407 340 KGVR-QIPKSANKIRALRMALDEI---PDSVRLWK-ALVE------ISSEEEARILLHRAVECC--PLDVELWLAL---- 402 (605)
Q Consensus 340 ~al~-~~P~s~~a~~vl~kAle~~---P~~~~lw~-~l~~------le~~e~A~~~l~rAl~~~--P~~~~lw~aL---- 402 (605)
+.+. .+|.. |.+.++++++.. +.+...|. .+++ ..++..|...|+...... +.++.+...+
T Consensus 108 ~i~~~~~~~~--a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~ 185 (608)
T PF10345_consen 108 RIYFKTNPKA--ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSE 185 (608)
T ss_pred HHHHhcCHHH--HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHH
Confidence 1111 11111 444555554433 22332222 1111 136777888888877665 4555444322
Q ss_pred --HHh--hcHHHHHHHHHHHHHhCC----------CCHHHHHHHHHH--H-HcCCHHHHHHH---HHHHHHHhccCcccc
Q 007407 403 --VRL--ETYGVARSVLNKARKKLP----------KERAIWIAAAKL--E-ANGNTSMVGKI---IERGIRALQGEEVVI 462 (605)
Q Consensus 403 --a~l--e~~e~A~~vL~~al~~~p----------~~~~iwi~~a~L--e-~~g~~~~a~~i---~~~al~~~p~~~~~~ 462 (605)
+.+ ..++++...++++....- ....+|+.+.++ . ..|++..+... ++..++......
T Consensus 186 ~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~--- 262 (608)
T PF10345_consen 186 ALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSP--- 262 (608)
T ss_pred HHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCc---
Confidence 112 135566666666633221 123456665543 2 56665544443 344444332210
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---------
Q 007407 463 DRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLT--------- 533 (605)
Q Consensus 463 ~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~--------- 533 (605)
.-..|-..+.+-...+.......-..-.+.+-|.+.-..-+|+.-+-.....+..+.|...+.++++.--+
T Consensus 263 ~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~ 342 (608)
T PF10345_consen 263 SWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAP 342 (608)
T ss_pred cCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCC
Confidence 00001110000000000000000000000010100000111111122222233333444444444332111
Q ss_pred -----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---C------CHHHHHHHHHHHHHcCChHH
Q 007407 534 -----------------KKNIWLKAAQLEKSYGCRESLIALLRKAVTYCP---Q------AEVLWLMGAKEKWLAGDVPA 587 (605)
Q Consensus 534 -----------------~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P---~------~~~l~l~~a~~~~~~gd~~~ 587 (605)
...+.+..+....-.+++..+...++.+...+. . .+.+++..|-.+...|+.+.
T Consensus 343 ~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~ 422 (608)
T PF10345_consen 343 SESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEA 422 (608)
T ss_pred CcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHH
Confidence 012233344555567889889888888877642 2 26667777888888999999
Q ss_pred HHHHHH
Q 007407 588 TRDILQ 593 (605)
Q Consensus 588 Ar~il~ 593 (605)
|..+|.
T Consensus 423 A~~~y~ 428 (608)
T PF10345_consen 423 ALYQYQ 428 (608)
T ss_pred HHHHHh
Confidence 999998
No 237
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.47 E-value=0.045 Score=62.42 Aligned_cols=103 Identities=7% Similarity=-0.036 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHH
Q 007407 440 NTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIET 519 (605)
Q Consensus 440 ~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~ 519 (605)
++.+|.+...+.++..|. ..-.-...|....+.|..++|..+++..-...++ +..+.-.+-..|.+.++.++
T Consensus 24 qfkkal~~~~kllkk~Pn-----~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~---D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 24 QFKKALAKLGKLLKKHPN-----ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT---DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred HHHHHHHHHHHHHHHCCC-----cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC---chHHHHHHHHHHHHHhhhhH
Confidence 444444444444444432 2333333344445555555555444443333333 22222233334445555555
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCH
Q 007407 520 ARAIFSPACTVFLTKKNIWLKAAQLEKSYGCR 551 (605)
Q Consensus 520 A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~ 551 (605)
|..+|++++..+|+ ......|-+.+.+.+++
T Consensus 96 ~~~~Ye~~~~~~P~-eell~~lFmayvR~~~y 126 (932)
T KOG2053|consen 96 AVHLYERANQKYPS-EELLYHLFMAYVREKSY 126 (932)
T ss_pred HHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHH
Confidence 55555555555555 44444444444444443
No 238
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.44 E-value=0.48 Score=50.31 Aligned_cols=160 Identities=18% Similarity=0.096 Sum_probs=92.1
Q ss_pred CCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhC-CCchhhHHHHHHHHHHHH--
Q 007407 439 GNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADR---AGSVVTCVAIITNTIEIG-VDEEDKKRTWVADVEECK-- 512 (605)
Q Consensus 439 g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~---~g~~~~A~~i~~~al~~~-p~~~~~~~~~~~~a~~~~-- 512 (605)
.+++..+++++. ++.+|...+.....+-..+|-.+.+ .|+.+.|..++..++... +. ..+++...+..|.
T Consensus 155 qdydamI~Lve~-l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~---~~d~~gL~GRIyKD~ 230 (374)
T PF13281_consen 155 QDYDAMIKLVET-LEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENP---DPDTLGLLGRIYKDL 230 (374)
T ss_pred hhHHHHHHHHHH-hhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCC---ChHHHHHHHHHHHHH
Confidence 345655555544 3334433333455566677777777 788888888888855432 22 3333333333221
Q ss_pred -------HcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-HH---HHHHHHHH----HHHhC--CCCHHHHHH-
Q 007407 513 -------KRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGC-RE---SLIALLRK----AVTYC--PQAEVLWLM- 574 (605)
Q Consensus 513 -------~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~-~e---~A~~~lek----Al~~~--P~~~~l~l~- 574 (605)
....++.|+..|.++.+..|+..+.-+.. .++...|. ++ +++++--+ ..+.. .+....|..
T Consensus 231 ~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~A-tLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~A 309 (374)
T PF13281_consen 231 FLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAA-TLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVA 309 (374)
T ss_pred HHHcCccchHHHHHHHHHHHHHHcCCccccchHHHH-HHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHH
Confidence 12347889999999999998765555444 45555553 22 22222211 11111 122445543
Q ss_pred -HHHHHHHcCChHHHHHHHHHHHHHCCCCC
Q 007407 575 -GAKEKWLAGDVPATRDILQEAYAAIPNSE 603 (605)
Q Consensus 575 -~a~~~~~~gd~~~Ar~il~kAl~~~P~~~ 603 (605)
++.+....||+++|.+.+++++..+|..-
T Consensus 310 Tl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 310 TLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 33344558999999999999999988653
No 239
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=96.43 E-value=0.044 Score=49.17 Aligned_cols=43 Identities=9% Similarity=0.006 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 007407 553 SLIALLRKAVTYC--PQAEVLWLMGAKEKWLAGDVPATRDILQEA 595 (605)
Q Consensus 553 ~A~~~lekAl~~~--P~~~~l~l~~a~~~~~~gd~~~Ar~il~kA 595 (605)
.+.++|+...... -+.+.+|..+|.++...|++++|.+||..|
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 4445555444432 234555555555555555555555555554
No 240
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.37 E-value=0.12 Score=55.04 Aligned_cols=165 Identities=13% Similarity=0.109 Sum_probs=107.0
Q ss_pred HHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHh
Q 007407 418 ARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEV---ADRAGSVVTCVAIITNTIEI 493 (605)
Q Consensus 418 al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~---~e~~g~~~~A~~i~~~al~~ 493 (605)
.+..+|-+.+.++.++.+. .+|+...|..++++|+=.+.. .|...... -...| .| .+
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~--------~~~~~F~~~~~~~~~g---~~--------rL 92 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFER--------AFHPSFSPFRSNLTSG---NC--------RL 92 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--------HHHHHhhhhhcccccC---cc--------cc
Confidence 3466899999999999877 899999999999998755421 11111100 00011 00 11
Q ss_pred CCCchhhHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCC-
Q 007407 494 GVDEEDKKRT---WVADVEECKKRGSIETARAIFSPACTVFLT-KKNIWLKAAQLE-KSYGCRESLIALLRKAVTYCPQ- 567 (605)
Q Consensus 494 ~p~~~~~~~~---~~~~a~~~~~~g~~~~A~~i~~~al~~~P~-~~~~w~~la~l~-~~~g~~e~A~~~lekAl~~~P~- 567 (605)
+-..+.|..+ .+..+..+.++|.+.+|.++++-.+.++|. ++-.-..+...+ .+.++++-.+++++.....+..
T Consensus 93 ~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~ 172 (360)
T PF04910_consen 93 DYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRN 172 (360)
T ss_pred CCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh
Confidence 1111124443 344567788899999999999999999998 665555555444 4667888888888876653221
Q ss_pred ----CHHHHHHHHHHHHHcCCh---------------HHHHHHHHHHHHHCCC
Q 007407 568 ----AEVLWLMGAKEKWLAGDV---------------PATRDILQEAYAAIPN 601 (605)
Q Consensus 568 ----~~~l~l~~a~~~~~~gd~---------------~~Ar~il~kAl~~~P~ 601 (605)
-|.+.+..|-.++..++. +.|...|.+|+...|.
T Consensus 173 ~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 173 WLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred hhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 234555556666666666 8999999999998874
No 241
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.11 Score=51.15 Aligned_cols=68 Identities=10% Similarity=-0.021 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 007407 501 KRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQA 568 (605)
Q Consensus 501 ~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~ 568 (605)
..+++++++.+...|++-++...+..+|...|++..+++..|......=+..+|..-|+++++.+|.-
T Consensus 230 tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 230 TPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred hHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 34577888999999999999999999999999999999999999998889999999999999999844
No 242
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.31 E-value=0.0078 Score=40.30 Aligned_cols=32 Identities=13% Similarity=0.196 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 007407 536 NIWLKAAQLEKSYGCRESLIALLRKAVTYCPQ 567 (605)
Q Consensus 536 ~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~ 567 (605)
.+|+.+|.++...|++++|+..|++|++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46777777777777777777777777777775
No 243
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.20 E-value=0.0091 Score=39.90 Aligned_cols=32 Identities=16% Similarity=0.100 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCC
Q 007407 570 VLWLMGAKEKWLAGDVPATRDILQEAYAAIPN 601 (605)
Q Consensus 570 ~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~ 601 (605)
.+|..+|.++...|++++|...|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35666777777777777777777777777664
No 244
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.15 E-value=0.22 Score=47.58 Aligned_cols=99 Identities=12% Similarity=0.050 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007407 503 TWVADVEECKKRGSIETARAIFSPACTVFLT---KKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEK 579 (605)
Q Consensus 503 ~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~---~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~ 579 (605)
.-+..|..+...|+++.|...++.++..--+ ..-+=++++.+..+.|.+++|++++....... -.+..-.+-|.++
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDil 169 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGDIL 169 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhhHH
Confidence 3456788888999999999999988865332 23445678899999999999999988433221 1234456778888
Q ss_pred HHcCChHHHHHHHHHHHHHCCCC
Q 007407 580 WLAGDVPATRDILQEAYAAIPNS 602 (605)
Q Consensus 580 ~~~gd~~~Ar~il~kAl~~~P~~ 602 (605)
...|+.++||..|++|++..+++
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 170 LAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHcCchHHHHHHHHHHHHccCCh
Confidence 88999999999999999987543
No 245
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.07 E-value=0.012 Score=62.85 Aligned_cols=107 Identities=14% Similarity=-0.007 Sum_probs=94.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 007407 470 EAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYG 549 (605)
Q Consensus 470 ~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g 549 (605)
.|......+.++.|...|.++|.++|+ +..+|-.++..++..+++..|..-+.+|++.+|....+|+..|..+...+
T Consensus 10 ean~~l~~~~fd~avdlysKaI~ldpn---ca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIELDPN---CAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhcCCc---ceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 344455567789999999999999998 77788888889999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007407 550 CRESLIALLRKAVTYCPQAEVLWLMGAKEK 579 (605)
Q Consensus 550 ~~e~A~~~lekAl~~~P~~~~l~l~~a~~~ 579 (605)
.+.+|+..|++.....|+.+.+-.++..+.
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence 999999999999999999998877765543
No 246
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=96.06 E-value=0.13 Score=46.19 Aligned_cols=111 Identities=20% Similarity=0.275 Sum_probs=65.9
Q ss_pred HHHHHHHHHHhCC---CCHHHHHHHHH-HH-Hc---CCHHHHHHHHHHHHHHhccCcc----cccHHHHHHHHHHHHHcC
Q 007407 411 ARSVLNKARKKLP---KERAIWIAAAK-LE-AN---GNTSMVGKIIERGIRALQGEEV----VIDRDTWMKEAEVADRAG 478 (605)
Q Consensus 411 A~~vL~~al~~~p---~~~~iwi~~a~-Le-~~---g~~~~a~~i~~~al~~~p~~~~----~~~~~~wl~~A~~~e~~g 478 (605)
.+..++..+.... +..++|+.+.+ ++ .. +.......++++++..+..... +--..+|+.+|..+.
T Consensus 4 ~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~--- 80 (126)
T PF08311_consen 4 QRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS--- 80 (126)
T ss_dssp HHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS---
T ss_pred HHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc---
Confidence 3445555565554 34567877775 33 21 3456667788888887755321 113467777765432
Q ss_pred CHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007407 479 SVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPAC 528 (605)
Q Consensus 479 ~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al 528 (605)
.+..+|..+...+.- .....+|..+|..+...|++.+|..+|..++
T Consensus 81 ---~~~~if~~l~~~~IG-~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 ---DPREIFKFLYSKGIG-TKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp ---HHHHHHHHHHHHTTS-TTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHcCcc-HHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 666677766654432 1256677777777777777777777777654
No 247
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=96.05 E-value=0.011 Score=38.80 Aligned_cols=31 Identities=23% Similarity=0.505 Sum_probs=24.2
Q ss_pred cCHHHHHHHHHHHHhhCCCCHHHHHHHHhhc
Q 007407 299 NEEAAARKLITKGCNMCPKNEDVWLEACRLA 329 (605)
Q Consensus 299 g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~ 329 (605)
|+++.|+.++++++..+|.+.++|+.++.++
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e 31 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFE 31 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 4567788888888888888888888887764
No 248
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.05 E-value=0.005 Score=65.77 Aligned_cols=97 Identities=13% Similarity=0.055 Sum_probs=90.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 007407 508 VEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPA 587 (605)
Q Consensus 508 a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~ 587 (605)
+......+.|+.|...|.+|++++|+...+|...+..+.+.+++-.|+.-+.+|++..|.....|+.-|......+.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHH
Confidence 45566678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCC
Q 007407 588 TRDILQEAYAAIPNSEE 604 (605)
Q Consensus 588 Ar~il~kAl~~~P~~~~ 604 (605)
|+..|++...+.|+.+.
T Consensus 91 A~~~l~~~~~l~Pnd~~ 107 (476)
T KOG0376|consen 91 ALLDLEKVKKLAPNDPD 107 (476)
T ss_pred HHHHHHHhhhcCcCcHH
Confidence 99999999999998763
No 249
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.86 E-value=0.79 Score=47.27 Aligned_cols=155 Identities=9% Similarity=-0.073 Sum_probs=105.3
Q ss_pred HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCchhhHHHHHHHHHHHHHcC
Q 007407 437 ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEI-GVDEEDKKRTWVADVEECKKRG 515 (605)
Q Consensus 437 ~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~-~p~~~~~~~~~~~~a~~~~~~g 515 (605)
..|+.-+|....++.++-+|.. .-.|..-=..+.-.|+...-+..+++++-. +++.|-...+.-.++..++..|
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtD-----lla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTD-----LLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred ccccccHHHHHHHHHHHhCchh-----hhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence 5666667777778888877763 233333334455567777777778887765 5553323333445677788899
Q ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHH
Q 007407 516 SIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQA----EVLWLMGAKEKWLAGDVPATRDI 591 (605)
Q Consensus 516 ~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~----~~l~l~~a~~~~~~gd~~~Ar~i 591 (605)
-+++|...-.++++++|++.-+-...+.++...|+..++.+..++--..--++ ..-|.+.|.++...+.++.|..|
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 99999999999999999998888888999998999888888776432110000 11133445555567889999999
Q ss_pred HHHHH
Q 007407 592 LQEAY 596 (605)
Q Consensus 592 l~kAl 596 (605)
|++-+
T Consensus 270 yD~ei 274 (491)
T KOG2610|consen 270 YDREI 274 (491)
T ss_pred HHHHH
Confidence 98754
No 250
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.75 E-value=0.92 Score=49.88 Aligned_cols=51 Identities=20% Similarity=0.237 Sum_probs=33.1
Q ss_pred hhcHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHh
Q 007407 405 LETYGVARSVLNKARKKLPK------------ERAIWIAAAKLE-ANGNTSMVGKIIERGIRAL 455 (605)
Q Consensus 405 le~~e~A~~vL~~al~~~p~------------~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~ 455 (605)
...|+.|+..+.-|++..+. +.+-++..+.+- .+|+.+++..+++++|=.+
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~ 314 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVF 314 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Confidence 34578888888777776532 344455566555 6777777777777776543
No 251
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.69 E-value=0.74 Score=50.92 Aligned_cols=178 Identities=7% Similarity=0.018 Sum_probs=120.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHH-----H-HHHH---HcCCHH
Q 007407 412 RSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKE-----A-EVAD---RAGSVV 481 (605)
Q Consensus 412 ~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~-----A-~~~e---~~g~~~ 481 (605)
..+++-++...|.... .+..+- =.||-+...+.+.++.+.. ++-.....+..+ . ..+- ......
T Consensus 177 ~G~f~L~lSlLPp~~~---kll~~vGF~gdR~~GL~~L~~~~~~~---~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~ 250 (468)
T PF10300_consen 177 FGLFNLVLSLLPPKVL---KLLSFVGFSGDRELGLRLLWEASKSE---NIRSPLAALVLLWYHLVVPSFLGIDGEDVPLE 250 (468)
T ss_pred HHHHHHHHHhCCHHHH---HHHhhcCcCCcHHHHHHHHHHHhccC---CcchHHHHHHHHHHHHHHHHHcCCcccCCCHH
Confidence 3467777777776422 222233 4577788888888876531 111011111111 0 1111 234678
Q ss_pred HHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHcCCHHHHHHH
Q 007407 482 TCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLT----KKNIWLKAAQLEKSYGCRESLIAL 557 (605)
Q Consensus 482 ~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~----~~~~w~~la~l~~~~g~~e~A~~~ 557 (605)
.|..++.......|+ ..-..+..+..+...|++++|+..|++++..... ..-.++.+++.+.-.+++++|...
T Consensus 251 ~a~~lL~~~~~~yP~---s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 251 EAEELLEEMLKRYPN---SALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred HHHHHHHHHHHhCCC---cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 899999999999998 6666778899999999999999999998853222 345577789999999999999999
Q ss_pred HHHHHHhCCCCHHH-HHHHHHHHHHcCCh-------HHHHHHHHHHHHH
Q 007407 558 LRKAVTYCPQAEVL-WLMGAKEKWLAGDV-------PATRDILQEAYAA 598 (605)
Q Consensus 558 lekAl~~~P~~~~l-~l~~a~~~~~~gd~-------~~Ar~il~kAl~~ 598 (605)
|.+.++.+..+..+ .++.|-++...|+. ++|...+.++-..
T Consensus 328 f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 328 FLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 99999987665443 34445567778888 7777777766543
No 252
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=95.66 E-value=0.014 Score=63.55 Aligned_cols=100 Identities=14% Similarity=0.105 Sum_probs=87.7
Q ss_pred HHHHHHHH-cCCHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 007407 506 ADVEECKK-RGSIETARAIFSPACTVFLTKK-NIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAG 583 (605)
Q Consensus 506 ~~a~~~~~-~g~~~~A~~i~~~al~~~P~~~-~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~g 583 (605)
+.|.+|++ .|+...|.+++..|+-.-|... .-...||++....|....|-.++.+++.+....|..++..|..+....
T Consensus 611 n~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~ 690 (886)
T KOG4507|consen 611 NEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALK 690 (886)
T ss_pred ecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHh
Confidence 34556665 7899999999999999888754 447789999999998889999999999999777888999999999999
Q ss_pred ChHHHHHHHHHHHHHCCCCCCC
Q 007407 584 DVPATRDILQEAYAAIPNSEEI 605 (605)
Q Consensus 584 d~~~Ar~il~kAl~~~P~~~~I 605 (605)
|+++|.+.|..|++..|+++.|
T Consensus 691 ~i~~a~~~~~~a~~~~~~~~~~ 712 (886)
T KOG4507|consen 691 NISGALEAFRQALKLTTKCPEC 712 (886)
T ss_pred hhHHHHHHHHHHHhcCCCChhh
Confidence 9999999999999999999865
No 253
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.65 E-value=1 Score=46.86 Aligned_cols=126 Identities=10% Similarity=0.020 Sum_probs=52.9
Q ss_pred CCHHHHHHHHHHHHHHhccCcc-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--h-----hhHHHHHHHHHH
Q 007407 439 GNTSMVGKIIERGIRALQGEEV-VIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDE--E-----DKKRTWVADVEE 510 (605)
Q Consensus 439 g~~~~a~~i~~~al~~~p~~~~-~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~--~-----~~~~~~~~~a~~ 510 (605)
+.++++...|+.|+.....++. .....+...++..+-...++++|.-...++..+-..- . ....+.+..+-.
T Consensus 136 s~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaVa 215 (518)
T KOG1941|consen 136 SVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVA 215 (518)
T ss_pred HHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHH
Confidence 3444455555555444333322 1233344444444444444444444444444432110 0 011122333444
Q ss_pred HHHcCCHHHHHHHHHHHHHhc------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007407 511 CKKRGSIETARAIFSPACTVF------LTKKNIWLKAAQLEKSYGCRESLIALLRKAVTY 564 (605)
Q Consensus 511 ~~~~g~~~~A~~i~~~al~~~------P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~ 564 (605)
+...|.+-.|.+.++++.++- |...-...-+|.+|...|+.+.|..-|+.|+..
T Consensus 216 lR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 216 LRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 444555555555555544331 112233334455555555555555555555444
No 254
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.65 E-value=0.76 Score=45.20 Aligned_cols=139 Identities=14% Similarity=0.112 Sum_probs=96.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhccCcc-cccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCchh---hHHH
Q 007407 429 WIAAAKLEANGNTSMVGKIIERGIRALQGEEV-VIDRDTWMKEAEVADRA-GSVVTCVAIITNTIEIGVDEED---KKRT 503 (605)
Q Consensus 429 wi~~a~Le~~g~~~~a~~i~~~al~~~p~~~~-~~~~~~wl~~A~~~e~~-g~~~~A~~i~~~al~~~p~~~~---~~~~ 503 (605)
+..++..++.+++.+|...++++++.+-..|. ..-....+..|++++.. .+++.|++.|+.+-.....++. -..-
T Consensus 77 YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC 156 (288)
T KOG1586|consen 77 YVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKC 156 (288)
T ss_pred HHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHH
Confidence 44455666677899999999999998866543 11223456778888876 6789999999999876543221 1233
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 007407 504 WVADVEECKKRGSIETARAIFSPACTVFLTKK-------NIWLKAAQLEKSYGCRESLIALLRKAVTYCPQ 567 (605)
Q Consensus 504 ~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~-------~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~ 567 (605)
++.-|......+++..|+.+|+++....-++. ..++..|..+.-..+.-.+...+++-.+.+|.
T Consensus 157 ~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 157 LLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence 55667777788999999999999987654432 23334444445557777788888888888884
No 255
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.48 E-value=0.0059 Score=62.60 Aligned_cols=124 Identities=16% Similarity=0.015 Sum_probs=97.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 007407 469 KEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSY 548 (605)
Q Consensus 469 ~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~ 548 (605)
-.|..+...|.+++|++.+..+|.++|. ...++...+..++..++...|+.-|..|++++|+...-+...+......
T Consensus 119 ~~A~eAln~G~~~~ai~~~t~ai~lnp~---~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rll 195 (377)
T KOG1308|consen 119 VQASEALNDGEFDTAIELFTSAIELNPP---LAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLL 195 (377)
T ss_pred HHHHHHhcCcchhhhhcccccccccCCc---hhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHh
Confidence 3456666788999999999999999887 7788888899999999999999999999999999988888888999999
Q ss_pred CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 007407 549 GCRESLIALLRKAVTYCPQA-EVLWLMGAKEKWLAGDVPATRDILQEAYA 597 (605)
Q Consensus 549 g~~e~A~~~lekAl~~~P~~-~~l~l~~a~~~~~~gd~~~Ar~il~kAl~ 597 (605)
|++++|...|..|++++-+. ...|+. .+.-..+.+++=+..++++.+
T Consensus 196 g~~e~aa~dl~~a~kld~dE~~~a~lK--eV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 196 GNWEEAAHDLALACKLDYDEANSATLK--EVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred hchHHHHHHHHHHHhccccHHHHHHHH--HhccchhhhhhchhHHHHHHH
Confidence 99999999999999987532 233432 233335555666666666554
No 256
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.46 E-value=2.5 Score=42.40 Aligned_cols=126 Identities=11% Similarity=0.028 Sum_probs=89.6
Q ss_pred cHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHH
Q 007407 407 TYGVARSVLNKARKKL-PKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCV 484 (605)
Q Consensus 407 ~~e~A~~vL~~al~~~-p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~ 484 (605)
+|.-....+++.++.+ |.++.+...++++. +.|+.+.+..+|++.-+....
T Consensus 192 Ey~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~k--------------------------- 244 (366)
T KOG2796|consen 192 EYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQK--------------------------- 244 (366)
T ss_pred hhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhh---------------------------
Confidence 5666677788888777 45666666677777 778877777766654322110
Q ss_pred HHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007407 485 AIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTY 564 (605)
Q Consensus 485 ~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~ 564 (605)
+.-.-. +..+..+.+.++...+++..|...|.+++..+|.++.+-..-|-+..-.|+...|++.++.++..
T Consensus 245 ------L~~~q~---~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 245 ------LDGLQG---KIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred ------hhccch---hHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 000000 23334455666777888899999999999999999888888888888889999999999999999
Q ss_pred CCCC
Q 007407 565 CPQA 568 (605)
Q Consensus 565 ~P~~ 568 (605)
.|.+
T Consensus 316 ~P~~ 319 (366)
T KOG2796|consen 316 DPRH 319 (366)
T ss_pred CCcc
Confidence 9854
No 257
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.46 E-value=0.014 Score=59.83 Aligned_cols=86 Identities=16% Similarity=0.111 Sum_probs=41.4
Q ss_pred HcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 007407 513 KRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDIL 592 (605)
Q Consensus 513 ~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il 592 (605)
..|.+++|+..|..++.++|....++...+.++.+.++...|+.-+..|+.++|+...-|-.-+......|++++|...|
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 34444555555555555555544444444455544444445555555555555444444444444444444455555554
Q ss_pred HHHHHH
Q 007407 593 QEAYAA 598 (605)
Q Consensus 593 ~kAl~~ 598 (605)
..|.++
T Consensus 206 ~~a~kl 211 (377)
T KOG1308|consen 206 ALACKL 211 (377)
T ss_pred HHHHhc
Confidence 444443
No 258
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=0.21 Score=49.31 Aligned_cols=67 Identities=12% Similarity=0.021 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCC
Q 007407 535 KNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPN 601 (605)
Q Consensus 535 ~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~ 601 (605)
..++.++.+.+...|++-++++.....+..+|.+..+++..|+.....=+..+|++-|.++++.+|.
T Consensus 230 tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 230 TPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred hHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 3677788899999999999999999999999999999999999888888899999999999999985
No 259
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.43 E-value=0.083 Score=53.52 Aligned_cols=90 Identities=18% Similarity=0.199 Sum_probs=72.3
Q ss_pred CccccCchhHHhhhhh-hcccchhhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q 007407 240 GLTVFDPSGYLTRMND-LKITTNSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKN 318 (605)
Q Consensus 240 ~~~~~dp~~yl~~L~~-~~~~~~~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~ 318 (605)
.++..+|.+-...+.. ..+......|+.++|-.+|+-++...|+++++.+..+.+.+..+++-.|-.++-+++...|.+
T Consensus 104 t~te~~pa~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~n 183 (472)
T KOG3824|consen 104 TQTENDPAKVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGN 183 (472)
T ss_pred hhcccCchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCc
Confidence 3455667665443321 112224577999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhc
Q 007407 319 EDVWLEACRLA 329 (605)
Q Consensus 319 ~~lwle~a~L~ 329 (605)
.+++....+-.
T Consensus 184 seALvnR~RT~ 194 (472)
T KOG3824|consen 184 SEALVNRARTT 194 (472)
T ss_pred hHHHhhhhccc
Confidence 99987776643
No 260
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.42 E-value=0.37 Score=48.95 Aligned_cols=139 Identities=12% Similarity=0.002 Sum_probs=89.8
Q ss_pred HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCC
Q 007407 437 ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGS 516 (605)
Q Consensus 437 ~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~ 516 (605)
..|+...+..+|..++...|. +.+.-+.+|+.+...|..+.|.+++...-..... +..........++.+...
T Consensus 146 ~~e~~~~a~~~~~~al~~~~~-----~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~--~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAAPE-----NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQD--KAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hccchhhHHHHHHHHHHhCcc-----cchHHHHHHHHHHHcCChHHHHHHHHhCcccchh--hHHHHHHHHHHHHHHHhc
Confidence 788888999999999888765 6778888888888889888888877654222111 011111122333333332
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcC
Q 007407 517 IETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCP--QAEVLWLMGAKEKWLAG 583 (605)
Q Consensus 517 ~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P--~~~~l~l~~a~~~~~~g 583 (605)
..+. ..+...+..+|++..+-+.+|..+...|+.+.|.+.+-..+..+- ++...--.+-.+....|
T Consensus 219 ~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 219 TPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 2222 234556677899999999999999999999998888888777753 23334344444333344
No 261
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.35 E-value=0.032 Score=37.14 Aligned_cols=32 Identities=16% Similarity=0.321 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 007407 536 NIWLKAAQLEKSYGCRESLIALLRKAVTYCPQ 567 (605)
Q Consensus 536 ~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~ 567 (605)
.+|+.+|.++...|++++|.+.|+++++.+|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35666666777777777777777777666663
No 262
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.30 E-value=1.5 Score=46.37 Aligned_cols=126 Identities=6% Similarity=-0.006 Sum_probs=78.3
Q ss_pred CCHHHHHHHHHHHHHHhccCcc-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--c-hhhHHHHHHHHHHHHHc
Q 007407 439 GNTSMVGKIIERGIRALQGEEV-VIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVD--E-EDKKRTWVADVEECKKR 514 (605)
Q Consensus 439 g~~~~a~~i~~~al~~~p~~~~-~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~--~-~~~~~~~~~~a~~~~~~ 514 (605)
|+++.++..-+.-+.....-|. .-.+......+..+.-.|+++.|.+.|+.++.+..+ + .......+.++..|.-.
T Consensus 209 Gdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll 288 (639)
T KOG1130|consen 209 GDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLL 288 (639)
T ss_pred ccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHH
Confidence 4466665544443333222111 112344455566666778889999998887665321 0 11234455666666667
Q ss_pred CCHHHHHHHHHHHHHhc------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007407 515 GSIETARAIFSPACTVF------LTKKNIWLKAAQLEKSYGCRESLIALLRKAVTY 564 (605)
Q Consensus 515 g~~~~A~~i~~~al~~~------P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~ 564 (605)
..+++|+.++.+-|.+- -....++..||..+-..|..+.|+...++.++.
T Consensus 289 ~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 289 KEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 77888888877665543 234566778888888889988888888877765
No 263
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.24 E-value=3.8 Score=41.14 Aligned_cols=222 Identities=11% Similarity=0.047 Sum_probs=113.0
Q ss_pred CChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHH-hhcCc-------hhHHHHHHHHHhhCCCcH-----
Q 007407 283 KKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEAC-RLARP-------DEAKSVVAKGVRQIPKSA----- 349 (605)
Q Consensus 283 ~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a-~L~~~-------~~Ak~~l~~al~~~P~s~----- 349 (605)
++-..|...-.+..+....++|..-++-.-+. +-+++++++- .++.. -.-+-+++.+.++.|.--
T Consensus 67 ~~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~l--D~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdR 144 (366)
T KOG2796|consen 67 DSLQLWTVRLALLVKLRLFQNAEMELEPFGNL--DQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDR 144 (366)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHhhhhhhccC--CCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHH
Confidence 34566766655555555556555444322222 3345555543 22221 133456677777765541
Q ss_pred --HHHHHHHHHH-----HhCCC-cHHHHHHHH----------Hh--CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHh---
Q 007407 350 --NKIRALRMAL-----DEIPD-SVRLWKALV----------EI--SSEEEARILLHRAVECC-PLDVELWLALVRL--- 405 (605)
Q Consensus 350 --~a~~vl~kAl-----e~~P~-~~~lw~~l~----------~l--e~~e~A~~~l~rAl~~~-P~~~~lw~aLa~l--- 405 (605)
.-+.+.++.+ ...|+ ++++|+.-. -+ .++.-...+|.+.++.. |..+.+...|.++
T Consensus 145 l~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ 224 (366)
T KOG2796|consen 145 LHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQ 224 (366)
T ss_pred HHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHh
Confidence 1111222222 23344 568997431 11 25667777899999888 5677777777764
Q ss_pred -hcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHH
Q 007407 406 -ETYGVARSVLNKARKKLPKERAIWIAAAKLEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCV 484 (605)
Q Consensus 406 -e~~e~A~~vL~~al~~~p~~~~iwi~~a~Le~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~ 484 (605)
++.+.|...+++.-+.. .+|. .+... .-+....+..+.-++++..|.
T Consensus 225 ~GD~k~a~~yf~~vek~~----------~kL~-~~q~~---------------------~~V~~n~a~i~lg~nn~a~a~ 272 (366)
T KOG2796|consen 225 IGDIKTAEKYFQDVEKVT----------QKLD-GLQGK---------------------IMVLMNSAFLHLGQNNFAEAH 272 (366)
T ss_pred cccHHHHHHHHHHHHHHH----------hhhh-ccchh---------------------HHHHhhhhhheecccchHHHH
Confidence 45666666666543211 0111 00000 011122223333344555555
Q ss_pred HHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHH
Q 007407 485 AIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTK---KNIWLKA 541 (605)
Q Consensus 485 ~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~---~~~w~~l 541 (605)
..+.+++..+|. ++.+-...|.+..=.|+...|+..++.++...|.. .++.+.+
T Consensus 273 r~~~~i~~~D~~---~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL 329 (366)
T KOG2796|consen 273 RFFTEILRMDPR---NAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNL 329 (366)
T ss_pred HHHhhccccCCC---chhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHH
Confidence 566666666655 33333344444444567777888888888887763 3444444
No 264
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=95.22 E-value=0.039 Score=36.01 Aligned_cols=29 Identities=24% Similarity=0.275 Sum_probs=14.7
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 007407 550 CRESLIALLRKAVTYCPQAEVLWLMGAKE 578 (605)
Q Consensus 550 ~~e~A~~~lekAl~~~P~~~~l~l~~a~~ 578 (605)
+.+.++.+|++++..+|.++.+|..|+.+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 34445555555555555555555555443
No 265
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.06 E-value=6.4 Score=42.76 Aligned_cols=165 Identities=9% Similarity=-0.021 Sum_probs=109.4
Q ss_pred HcCCHHHHHHHHHHHHHHhccCcc-----cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHH
Q 007407 437 ANGNTSMVGKIIERGIRALQGEEV-----VIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEEC 511 (605)
Q Consensus 437 ~~g~~~~a~~i~~~al~~~p~~~~-----~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~ 511 (605)
-.|++.++..-+..+.+....... .....+....+.++-.-+.++.|...+..+++.--..+.....-..+|-.|
T Consensus 335 v~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~Y 414 (629)
T KOG2300|consen 335 VRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISY 414 (629)
T ss_pred HhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHH
Confidence 567777777666555444322211 123445566677777888899999988888876422111222334567788
Q ss_pred HHcCCHHHHHHHHHHHHHhcCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-------HHH
Q 007407 512 KKRGSIETARAIFSPACTVFLT----------KKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVL-------WLM 574 (605)
Q Consensus 512 ~~~g~~~~A~~i~~~al~~~P~----------~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l-------~l~ 574 (605)
.+.++-+.-..+++. +.|. ...+++..|-+.+..+++.+|...+.+.++.. +.+.+ ...
T Consensus 415 L~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma-naed~~rL~a~~LvL 490 (629)
T KOG2300|consen 415 LRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA-NAEDLNRLTACSLVL 490 (629)
T ss_pred HHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-chhhHHHHHHHHHHH
Confidence 887765544444332 3343 24678888888899999999999999999876 34332 345
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCCCC
Q 007407 575 GAKEKWLAGDVPATRDILQEAYAAIPNSEEI 605 (605)
Q Consensus 575 ~a~~~~~~gd~~~Ar~il~kAl~~~P~~~~I 605 (605)
++.+....||..+++.+..-++++....++|
T Consensus 491 Ls~v~lslgn~~es~nmvrpamqlAkKi~Di 521 (629)
T KOG2300|consen 491 LSHVFLSLGNTVESRNMVRPAMQLAKKIPDI 521 (629)
T ss_pred HHHHHHHhcchHHHHhccchHHHHHhcCCCc
Confidence 5666667899999999999999887666554
No 266
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.98 E-value=2.2 Score=42.37 Aligned_cols=181 Identities=14% Similarity=0.070 Sum_probs=101.7
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHH----------HhhcHHHHHHHHHHHHHhC-----CCCHH-HHHHHHHHHHcCC
Q 007407 377 SEEEARILLHRAVECCPLDVELWLALV----------RLETYGVARSVLNKARKKL-----PKERA-IWIAAAKLEANGN 440 (605)
Q Consensus 377 ~~e~A~~~l~rAl~~~P~~~~lw~aLa----------~le~~e~A~~vL~~al~~~-----p~~~~-iwi~~a~Le~~g~ 440 (605)
+++.|...|.+|++..-+|-.+|.+.- .+..+.++...+++|...+ |.-.. .+-.++++-.+-+
T Consensus 46 ~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~ 125 (308)
T KOG1585|consen 46 KFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVK 125 (308)
T ss_pred cHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCC
Confidence 455666666666665555555554321 1223556666777776654 22111 1222344335667
Q ss_pred HHHHHHHHHHHHHHhccCccc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCchhhHHHHHHHHHHHHHcC
Q 007407 441 TSMVGKIIERGIRALQGEEVV-IDRDTWMKEAEVADRAGSVVTCVAIITNTIEI----GVDEEDKKRTWVADVEECKKRG 515 (605)
Q Consensus 441 ~~~a~~i~~~al~~~p~~~~~-~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~----~p~~~~~~~~~~~~a~~~~~~g 515 (605)
++.|+++|++++..+...+.. ...+.+-+.+..+.+...+.+|...+.+-..+ ..- .+.-..++..+..+.-..
T Consensus 126 Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y-~~~~k~~va~ilv~L~~~ 204 (308)
T KOG1585|consen 126 PDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAY-NSQCKAYVAAILVYLYAH 204 (308)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhc-ccHHHHHHHHHHHHhhHH
Confidence 899999999998887654321 12334444555555555555544333332221 100 113445666666666777
Q ss_pred CHHHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007407 516 SIETARAIFSPACTVF----LTKKNIWLKAAQLEKSYGCRESLIALLR 559 (605)
Q Consensus 516 ~~~~A~~i~~~al~~~----P~~~~~w~~la~l~~~~g~~e~A~~~le 559 (605)
++..|..+|+....+. |.+......|...| ..|+.+++-+++.
T Consensus 205 Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 205 DYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 8999999999876652 44555666655544 4578888877776
No 267
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=94.97 E-value=0.063 Score=54.36 Aligned_cols=113 Identities=11% Similarity=0.075 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 007407 466 TWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLE 545 (605)
Q Consensus 466 ~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~ 545 (605)
.-+..|....+.|+.+.|..+++.++...|. ++++++.++.+....+++-+|-.+|-+||.+.|.+..++...+...
T Consensus 118 ~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~---~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~ 194 (472)
T KOG3824|consen 118 LALKAAGRSRKDGKLEKAMTLFEHALALAPT---NPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTT 194 (472)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhcCCC---CHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccc
Confidence 3455666777788888888888888888887 7888888888888888888888888888888888887777654322
Q ss_pred HHc----CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH
Q 007407 546 KSY----GCRESLIALLRKAVTYCPQA-EVLWLMGAKEKWL 581 (605)
Q Consensus 546 ~~~----g~~e~A~~~lekAl~~~P~~-~~l~l~~a~~~~~ 581 (605)
--- .++-+...-..+.+...|++ ..+--+.-..|+.
T Consensus 195 plV~~iD~r~l~svdskrd~~~~i~~sN~ALRR~m~EtYf~ 235 (472)
T KOG3824|consen 195 PLVSAIDRRMLRSVDSKRDEFNHIQHSNTALRRMMRETYFL 235 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 111 11222333344444444544 4444444445543
No 268
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.93 E-value=2.6 Score=46.47 Aligned_cols=94 Identities=11% Similarity=0.012 Sum_probs=60.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-chhhHHHHHHHHHHHHHcCCHHHHHHHHHHH-----HHhcCCCHHHHHHHHH
Q 007407 470 EAEVADRAGSVVTCVAIITNTIEIGVD-EEDKKRTWVADVEECKKRGSIETARAIFSPA-----CTVFLTKKNIWLKAAQ 543 (605)
Q Consensus 470 ~A~~~e~~g~~~~A~~i~~~al~~~p~-~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~a-----l~~~P~~~~~w~~la~ 543 (605)
+...+.+.|++.+|.+..+-+++++|. +|.-.- ++-+ .+..+..+|+=-+..++.. +...|+- .+=.++|.
T Consensus 348 ~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l-~~ID-~~ALrareYqwiI~~~~~~e~~n~l~~~PN~-~yS~AlA~ 424 (665)
T KOG2422|consen 348 YMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGIL-YLID-IYALRAREYQWIIELSNEPENMNKLSQLPNF-GYSLALAR 424 (665)
T ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHH-HHHH-HHHHHHHhHHHHHHHHHHHHhhccHhhcCCc-hHHHHHHH
Confidence 455667889999999999999999987 332111 1111 1233444555555555544 3445664 33445666
Q ss_pred HHHHcCC---HHHHHHHHHHHHHhCC
Q 007407 544 LEKSYGC---RESLIALLRKAVTYCP 566 (605)
Q Consensus 544 l~~~~g~---~e~A~~~lekAl~~~P 566 (605)
++..... ...|+..+.+|+.++|
T Consensus 425 f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 425 FFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 6666554 6789999999998887
No 269
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=94.91 E-value=0.16 Score=52.16 Aligned_cols=91 Identities=13% Similarity=0.067 Sum_probs=44.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhc---CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007407 504 WVADVEECKKRGSIETARAIFSPACTVF---LT-KKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEK 579 (605)
Q Consensus 504 ~~~~a~~~~~~g~~~~A~~i~~~al~~~---P~-~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~ 579 (605)
+-..+..|....+|..|+..|.++|+.. |+ +..+|...|....-.|++..++.-..+|+...|.+...++.-|+++
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 3344444455555555555555555442 22 2344444454555555555555555555555555555555555554
Q ss_pred HHcCChHHHHHHHHH
Q 007407 580 WLAGDVPATRDILQE 594 (605)
Q Consensus 580 ~~~gd~~~Ar~il~k 594 (605)
+....+..|....+.
T Consensus 164 ~eLe~~~~a~nw~ee 178 (390)
T KOG0551|consen 164 LELERFAEAVNWCEE 178 (390)
T ss_pred HHHHHHHHHHHHHhh
Confidence 444443333333333
No 270
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.68 E-value=4.3 Score=40.74 Aligned_cols=161 Identities=14% Similarity=0.161 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHH-H---Hhh-cHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHcCCHH-HHHHHHHHH
Q 007407 379 EEARILLHRAVECCPLDVELWLAL-V---RLE-TYGVARSVLNKARKKLPKERAIWIAAAK-LEANGNTS-MVGKIIERG 451 (605)
Q Consensus 379 e~A~~~l~rAl~~~P~~~~lw~aL-a---~le-~~e~A~~vL~~al~~~p~~~~iwi~~a~-Le~~g~~~-~a~~i~~~a 451 (605)
..|..+...++..+|-+-.+|.-= . .+. +..+=...+..+...+|.+.++|..--. ++..|++. .-..+...+
T Consensus 60 ~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~ 139 (318)
T KOG0530|consen 60 PRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLM 139 (318)
T ss_pred HHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHH
Confidence 445555555555566555555411 0 111 1223344566666666666666665443 33444433 333455555
Q ss_pred HHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH-cC-----CHHHHHHHHH
Q 007407 452 IRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKK-RG-----SIETARAIFS 525 (605)
Q Consensus 452 l~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~-~g-----~~~~A~~i~~ 525 (605)
+....+ +..+|.-.--.+..-+.++.-.+.....|..+.- +-++|...-..... .| ..+.=.....
T Consensus 140 l~~DaK-----NYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~---NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~ 211 (318)
T KOG0530|consen 140 LDDDAK-----NYHAWSHRQWVLRFFKDYEDELAYADELLEEDIR---NNSAWNQRYFVITNTKGVISKAELERELNYTK 211 (318)
T ss_pred Hhcccc-----chhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhh---ccchhheeeEEEEeccCCccHHHHHHHHHHHH
Confidence 554333 3344443322233333355555555666665443 45555543221111 11 1233344556
Q ss_pred HHHHhcCCCHHHHHHHHHHHHH
Q 007407 526 PACTVFLTKKNIWLKAAQLEKS 547 (605)
Q Consensus 526 ~al~~~P~~~~~w~~la~l~~~ 547 (605)
..+...|++.++|..|.-++..
T Consensus 212 ~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 212 DKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred HHHHhCCCCccHHHHHHHHHHh
Confidence 6777889999999999888876
No 271
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.64 E-value=0.067 Score=35.11 Aligned_cols=28 Identities=14% Similarity=0.240 Sum_probs=11.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 007407 539 LKAAQLEKSYGCRESLIALLRKAVTYCP 566 (605)
Q Consensus 539 ~~la~l~~~~g~~e~A~~~lekAl~~~P 566 (605)
+.+|.++.+.|++++|..+|++.+..+|
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 3334444444444444444444444444
No 272
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.63 E-value=3.5 Score=45.63 Aligned_cols=84 Identities=14% Similarity=0.109 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHH
Q 007407 409 GVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAII 487 (605)
Q Consensus 409 e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~ 487 (605)
+.|..+|...++.+|++.-..+..|+++ ..|++++|+..|++++..-..-. ....-.+...+-.+....++++|...+
T Consensus 250 ~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~-Ql~~l~~~El~w~~~~~~~w~~A~~~f 328 (468)
T PF10300_consen 250 EEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWK-QLHHLCYFELAWCHMFQHDWEEAAEYF 328 (468)
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHH-hHHHHHHHHHHHHHHHHchHHHHHHHH
Confidence 4577778888888887666555666777 77778888877777763211100 011112223333333444555555555
Q ss_pred HHHHHh
Q 007407 488 TNTIEI 493 (605)
Q Consensus 488 ~~al~~ 493 (605)
...++.
T Consensus 329 ~~L~~~ 334 (468)
T PF10300_consen 329 LRLLKE 334 (468)
T ss_pred HHHHhc
Confidence 555544
No 273
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=94.50 E-value=9.3 Score=43.44 Aligned_cols=106 Identities=21% Similarity=0.224 Sum_probs=70.8
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHH
Q 007407 475 DRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESL 554 (605)
Q Consensus 475 e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A 554 (605)
-+.|....|-.+-.+.. +|+ .....|+..++-+..+|+|.+|..+|-.+ -.|+. ..++|.++|..+..
T Consensus 802 ~k~~kw~da~kla~e~~--~~e--~t~~~yiakaedldehgkf~eaeqlyiti--~~p~~------aiqmydk~~~~ddm 869 (1636)
T KOG3616|consen 802 GKAGKWEDAFKLAEECH--GPE--ATISLYIAKAEDLDEHGKFAEAEQLYITI--GEPDK------AIQMYDKHGLDDDM 869 (1636)
T ss_pred hccccHHHHHHHHHHhc--Cch--hHHHHHHHhHHhHHhhcchhhhhheeEEc--cCchH------HHHHHHhhCcchHH
Confidence 34455555544444432 444 35667888888888899999988887433 23543 35677888888877
Q ss_pred HHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 007407 555 IALLRKAVTYCPQA-EVLWLMGAKEKWLAGDVPATRDILQEA 595 (605)
Q Consensus 555 ~~~lekAl~~~P~~-~~l~l~~a~~~~~~gd~~~Ar~il~kA 595 (605)
+.+.++ ++|++ ......+|+.+...|+...|...|-+|
T Consensus 870 irlv~k---~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 870 IRLVEK---HHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred HHHHHH---hChhhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 776663 46655 556778888887788888887776655
No 274
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.44 E-value=8.1 Score=44.96 Aligned_cols=193 Identities=13% Similarity=0.125 Sum_probs=115.1
Q ss_pred hcHHHHHHHHHHHHHhCCC-----CHH---HHHHHH-HHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHH
Q 007407 406 ETYGVARSVLNKARKKLPK-----ERA---IWIAAA-KLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVAD 475 (605)
Q Consensus 406 e~~e~A~~vL~~al~~~p~-----~~~---iwi~~a-~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e 475 (605)
.++.+|..++.++-...|. ... -|..+. .+. ..|++++|.++.+.++..+|.+............+....
T Consensus 429 ~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~ 508 (894)
T COG2909 429 HRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAH 508 (894)
T ss_pred cChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHH
Confidence 3678888888887776654 111 133332 444 788999999999999999987643233344455566666
Q ss_pred HcCCHHHHHHHHHHHHHhCCC-chhhHHHHHH--HHHHHHHcCCH--HHHHHHHHHH----HHhcCCCHHHHHHHHHHHH
Q 007407 476 RAGSVVTCVAIITNTIEIGVD-EEDKKRTWVA--DVEECKKRGSI--ETARAIFSPA----CTVFLTKKNIWLKAAQLEK 546 (605)
Q Consensus 476 ~~g~~~~A~~i~~~al~~~p~-~~~~~~~~~~--~a~~~~~~g~~--~~A~~i~~~a----l~~~P~~~~~w~~la~l~~ 546 (605)
-.|.+..|+.+.+.+....-. +.-....|.. .+..+..+|+. ++....|... +..-|-........+.++.
T Consensus 509 ~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~ 588 (894)
T COG2909 509 IRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLR 588 (894)
T ss_pred HhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHH
Confidence 788999999998888765211 0113444543 46777788832 2222222222 2223443333333344443
Q ss_pred HcCCHH----HHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007407 547 SYGCRE----SLIALLRKAVTYCPQAEVL---WLMGAKEKWLAGDVPATRDILQEAYAA 598 (605)
Q Consensus 547 ~~g~~e----~A~~~lekAl~~~P~~~~l---~l~~a~~~~~~gd~~~Ar~il~kAl~~ 598 (605)
..-+++ +++.-++-.....|..-.. .+++|++++..||.++|...+......
T Consensus 589 ~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 589 AWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred HHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 333344 4444444444444543222 248899999999999999999887654
No 275
>PRK10941 hypothetical protein; Provisional
Probab=94.39 E-value=0.45 Score=48.47 Aligned_cols=70 Identities=11% Similarity=0.066 Sum_probs=63.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 007407 509 EECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKE 578 (605)
Q Consensus 509 ~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~ 578 (605)
..+.+.++++.|..+.+.++...|+++.-|...|.++.+.|.+..|..-|+.-++.||+.+..-+.-..+
T Consensus 189 ~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 189 AALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 4577899999999999999999999999999999999999999999999999999999998875554443
No 276
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=94.25 E-value=0.067 Score=35.42 Aligned_cols=30 Identities=30% Similarity=0.501 Sum_probs=22.1
Q ss_pred cHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 007407 266 DILKARKIVRAVTKNSPKKPLGWIQAARLEE 296 (605)
Q Consensus 266 d~~kAr~ll~~al~~~P~~~~~wia~Arle~ 296 (605)
++++||.+|++.+...|. +..||.+|++|+
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyAkFEe 31 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYAKFEE 31 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHHHhhc
Confidence 467788888888877765 666888887764
No 277
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.21 E-value=0.092 Score=34.41 Aligned_cols=32 Identities=19% Similarity=0.169 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCC
Q 007407 571 LWLMGAKEKWLAGDVPATRDILQEAYAAIPNS 602 (605)
Q Consensus 571 l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~ 602 (605)
+++.+|.++.+.|++++|..+|++.++..|+|
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 56788999999999999999999999999986
No 278
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=94.18 E-value=13 Score=42.37 Aligned_cols=100 Identities=16% Similarity=0.245 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007407 479 SVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALL 558 (605)
Q Consensus 479 ~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~l 558 (605)
....|..|+..+-.... ....|-..++-|.+.|+|+.|..+|.++ ........+|-+.|+++.|.++-
T Consensus 747 ew~kai~ildniqdqk~----~s~yy~~iadhyan~~dfe~ae~lf~e~--------~~~~dai~my~k~~kw~da~kla 814 (1636)
T KOG3616|consen 747 EWKKAISILDNIQDQKT----ASGYYGEIADHYANKGDFEIAEELFTEA--------DLFKDAIDMYGKAGKWEDAFKLA 814 (1636)
T ss_pred hhhhhHhHHHHhhhhcc----ccccchHHHHHhccchhHHHHHHHHHhc--------chhHHHHHHHhccccHHHHHHHH
Confidence 34445555544433221 2233445677788888999998888766 33344566777888888777766
Q ss_pred HHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHH
Q 007407 559 RKAVTYCPQA-EVLWLMGAKEKWLAGDVPATRDIL 592 (605)
Q Consensus 559 ekAl~~~P~~-~~l~l~~a~~~~~~gd~~~Ar~il 592 (605)
++.. -|.. ..+|+.-|..+-++|.+.+|.++|
T Consensus 815 ~e~~--~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 815 EECH--GPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHhc--CchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 5432 2433 334555555555677777666654
No 279
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.06 E-value=2.4 Score=43.22 Aligned_cols=118 Identities=15% Similarity=0.095 Sum_probs=64.4
Q ss_pred hcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHH
Q 007407 406 ETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCV 484 (605)
Q Consensus 406 e~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~ 484 (605)
+++.+|...|..++...|.+.++-+.++.+. ..|+.+.+..++...=....... ......|+.....+...+...
T Consensus 148 e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~-~~~l~a~i~ll~qaa~~~~~~--- 223 (304)
T COG3118 148 EDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKA-AHGLQAQIELLEQAAATPEIQ--- 223 (304)
T ss_pred cchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhH-HHHHHHHHHHHHHHhcCCCHH---
Confidence 4555666666666666666666666666555 66666666555544211111000 001122333332222233222
Q ss_pred HHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 007407 485 AIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVF 531 (605)
Q Consensus 485 ~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~ 531 (605)
-+++.+..+|+ +...-+.+|..+...|+.++|...+-..++.+
T Consensus 224 -~l~~~~aadPd---d~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 224 -DLQRRLAADPD---DVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred -HHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 23344455666 77778888888888888888888776666654
No 280
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.06 E-value=1.2 Score=47.28 Aligned_cols=161 Identities=16% Similarity=0.042 Sum_probs=93.4
Q ss_pred chhhhccHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHH---hcCHHHHHHHHHHHH-hhCCCCHHHHHHHHhhcCc
Q 007407 260 TNSELRDILKARKIVRAVTKN----SPKKPLGWIQAARLEEL---ANEEAAARKLITKGC-NMCPKNEDVWLEACRLARP 331 (605)
Q Consensus 260 ~~~~~gd~~kAr~ll~~al~~----~P~~~~~wia~Arle~~---~g~~~~Ar~ll~~~l-~~~P~~~~lwle~a~L~~~ 331 (605)
++-.+.|++....+.+.+-.. -++++..-..+|-..-+ .|+.++|+.++...+ ...+.+.+.+-..++++..
T Consensus 150 SyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD 229 (374)
T PF13281_consen 150 SYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKD 229 (374)
T ss_pred HhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 467888999999999888776 45666666666666666 899999999999954 5566778887777777643
Q ss_pred hhHHHHHHHHHhhCCCc-HHHHHHHHHHHHhCCCcHH---HHHHHHHhC----CHHHHHHHH---HHHH-Hh--CCCCHH
Q 007407 332 DEAKSVVAKGVRQIPKS-ANKIRALRMALDEIPDSVR---LWKALVEIS----SEEEARILL---HRAV-EC--CPLDVE 397 (605)
Q Consensus 332 ~~Ak~~l~~al~~~P~s-~~a~~vl~kAle~~P~~~~---lw~~l~~le----~~e~A~~~l---~rAl-~~--~P~~~~ 397 (605)
- +...-.....+ .+|...|+++.+..|+... +-..+.-.+ ...+.+.+- ...+ +. .....+
T Consensus 230 ~-----~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~d 304 (374)
T PF13281_consen 230 L-----FLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQD 304 (374)
T ss_pred H-----HHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccccc
Confidence 1 10000000000 4456778888877765321 111111111 122222222 2111 11 123345
Q ss_pred HHHHH------HHhhcHHHHHHHHHHHHHhCCCC
Q 007407 398 LWLAL------VRLETYGVARSVLNKARKKLPKE 425 (605)
Q Consensus 398 lw~aL------a~le~~e~A~~vL~~al~~~p~~ 425 (605)
.|..- +-+++++.|...++++++..|..
T Consensus 305 YWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 305 YWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 66422 22358899999999999876554
No 281
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.05 E-value=2 Score=43.03 Aligned_cols=170 Identities=12% Similarity=0.107 Sum_probs=126.2
Q ss_pred hcHHHHHHHHHHHHHhCCCCHHHHHHHHH-HH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHH-H
Q 007407 406 ETYGVARSVLNKARKKLPKERAIWIAAAK-LE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVV-T 482 (605)
Q Consensus 406 e~~e~A~~vL~~al~~~p~~~~iwi~~a~-Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~-~ 482 (605)
+....|..+...++..+|.+..+|..--. |. -..+..+-...+.+.++..|+ +..+|--.-.+.+..|++. .
T Consensus 57 E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npK-----NYQvWHHRr~ive~l~d~s~r 131 (318)
T KOG0530|consen 57 EKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPK-----NYQVWHHRRVIVELLGDPSFR 131 (318)
T ss_pred ccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcc-----chhHHHHHHHHHHHhcCcccc
Confidence 45677888999999999999999987543 43 334566667788888888776 5788887777778888776 6
Q ss_pred HHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-cC-----CHHHHHH
Q 007407 483 CVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKS-YG-----CRESLIA 556 (605)
Q Consensus 483 A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~-~g-----~~e~A~~ 556 (605)
-..+.+.++..+.. +..+|-..-=.+..-+.++.=.+...+.|+.+--+-++|...-.+... .| ..+.-+.
T Consensus 132 ELef~~~~l~~DaK---NYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~ 208 (318)
T KOG0530|consen 132 ELEFTKLMLDDDAK---NYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELN 208 (318)
T ss_pred hHHHHHHHHhcccc---chhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHH
Confidence 67888888887655 777776655455555668888899999999888777888865322222 22 2345567
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHH-cC
Q 007407 557 LLRKAVTYCPQAEVLWLMGAKEKWL-AG 583 (605)
Q Consensus 557 ~lekAl~~~P~~~~l~l~~a~~~~~-~g 583 (605)
+..+.+...|++...|.-+..++.. .|
T Consensus 209 yt~~~I~~vP~NeSaWnYL~G~l~~d~g 236 (318)
T KOG0530|consen 209 YTKDKILLVPNNESAWNYLKGLLELDSG 236 (318)
T ss_pred HHHHHHHhCCCCccHHHHHHHHHHhccC
Confidence 7888899999999999988887765 44
No 282
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.00 E-value=26 Score=45.23 Aligned_cols=109 Identities=16% Similarity=0.144 Sum_probs=82.6
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCC--------
Q 007407 463 DRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTV-FLT-------- 533 (605)
Q Consensus 463 ~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~-~P~-------- 533 (605)
..+.|+..|+.+...|.+++|...+-.+.+.. -+.+.++.|+.++..|+-..|..++++.++. +|+
T Consensus 1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r-----~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~ 1743 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESR-----LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDT 1743 (2382)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-----cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCcccc
Confidence 46899999999999999999998777776654 3567899999999999999999999999954 455
Q ss_pred --C------HHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHH
Q 007407 534 --K------KNIWLKAAQLEKSYGCR--ESLIALLRKAVTYCPQAEVLWLMGA 576 (605)
Q Consensus 534 --~------~~~w~~la~l~~~~g~~--e~A~~~lekAl~~~P~~~~l~l~~a 576 (605)
. ..+.+..+......|++ +...+.|+.|++..|..+.-++.+|
T Consensus 1744 p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1744 PQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred chhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHH
Confidence 1 12333344444455554 4689999999999996655444444
No 283
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=93.73 E-value=0.63 Score=47.94 Aligned_cols=101 Identities=10% Similarity=0.039 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 007407 465 DTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEED-KKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQ 543 (605)
Q Consensus 465 ~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~-~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~ 543 (605)
..+...+..|.+...+..|...|...|.....+++ +...|.++|....-.|+|..|+.-+..|+.+.|.+..+++.=|.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK 161 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence 44566677777777889999999999987654443 66778888888888999999999999999999999999998888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhC
Q 007407 544 LEKSYGCRESLIALLRKAVTYC 565 (605)
Q Consensus 544 l~~~~g~~e~A~~~lekAl~~~ 565 (605)
+......+..|....+..+..+
T Consensus 162 c~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred HHHHHHHHHHHHHHHhhhhhhh
Confidence 8888888777776666665543
No 284
>PRK10941 hypothetical protein; Provisional
Probab=93.71 E-value=0.36 Score=49.18 Aligned_cols=85 Identities=13% Similarity=0.098 Sum_probs=68.6
Q ss_pred cCchhHHhhhhhhcccchhhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHH
Q 007407 244 FDPSGYLTRMNDLKITTNSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWL 323 (605)
Q Consensus 244 ~dp~~yl~~L~~~~~~~~~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwl 323 (605)
.++..-+..+....-..+.+.+++.+|..+.+.++...|+++.-|-..+-++.+.|.+..|+.-++.-++.||+++++-+
T Consensus 174 a~~~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 174 ADNIEVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 34444444333222224678999999999999999999999999999999999999999999999999999999998755
Q ss_pred HHHhh
Q 007407 324 EACRL 328 (605)
Q Consensus 324 e~a~L 328 (605)
-..++
T Consensus 254 ik~ql 258 (269)
T PRK10941 254 IRAQI 258 (269)
T ss_pred HHHHH
Confidence 44444
No 285
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.70 E-value=6.7 Score=37.72 Aligned_cols=98 Identities=12% Similarity=0.001 Sum_probs=69.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH-HHHHHHHHH
Q 007407 468 MKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNI-WLKAAQLEK 546 (605)
Q Consensus 468 l~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~-w~~la~l~~ 546 (605)
+..|..+...|+++.|...++.++..-.++....-+-+.+|......|.+++|...+...-. ++...+ -...|.++.
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGDill 170 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGDILL 170 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhhHHH
Confidence 45566677788899999999988875433211223345678888889999999988875432 232232 334588999
Q ss_pred HcCCHHHHHHHHHHHHHhCCC
Q 007407 547 SYGCRESLIALLRKAVTYCPQ 567 (605)
Q Consensus 547 ~~g~~e~A~~~lekAl~~~P~ 567 (605)
..|+.++|+.-|++|++..+.
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 171 AKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HcCchHHHHHHHHHHHHccCC
Confidence 999999999999999998743
No 286
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=93.27 E-value=13 Score=39.60 Aligned_cols=122 Identities=8% Similarity=-0.021 Sum_probs=81.4
Q ss_pred cCCHHHHHHHHHHHHHhCCC--c-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--CC----CHHHHHHHHHHHHH
Q 007407 477 AGSVVTCVAIITNTIEIGVD--E-EDKKRTWVADVEECKKRGSIETARAIFSPACTVF--LT----KKNIWLKAAQLEKS 547 (605)
Q Consensus 477 ~g~~~~A~~i~~~al~~~p~--~-~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~--P~----~~~~w~~la~l~~~ 547 (605)
.|++..|+..-+.-+.+..+ + .....++-.++..++-.|+++.|...|+.++.+- -. ....-+.||+.|.-
T Consensus 208 LGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytl 287 (639)
T KOG1130|consen 208 LGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTL 287 (639)
T ss_pred eccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHH
Confidence 45566666544433332111 0 0123455666778888999999999999876542 11 34567788888888
Q ss_pred cCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007407 548 YGCRESLIALLRKAVTYCP------QAEVLWLMGAKEKWLAGDVPATRDILQEAYAA 598 (605)
Q Consensus 548 ~g~~e~A~~~lekAl~~~P------~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~ 598 (605)
...++.|+.++++-+.+.. .....+..+|..+-..|..++|....+..+++
T Consensus 288 l~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 288 LKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 8888999999888776632 22445566777777788888888877777654
No 287
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.07 E-value=0.12 Score=50.46 Aligned_cols=58 Identities=14% Similarity=0.236 Sum_probs=39.1
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 007407 511 CKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQA 568 (605)
Q Consensus 511 ~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~ 568 (605)
....++.+.|-++|.++++.-|....-|+.++....+.|+++.|-+-|++.++++|.+
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 3455666666677777777777776777777777777777777777777777776643
No 288
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=93.06 E-value=0.51 Score=51.84 Aligned_cols=99 Identities=9% Similarity=0.017 Sum_probs=85.2
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHH
Q 007407 475 DRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESL 554 (605)
Q Consensus 475 e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A 554 (605)
.-.|+...|.+.+..++...|.+ ..-..+++|.+++..|-...|...+.++|.+.-..+-..+.+|+++....+.+.|
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~--~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQ--QDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhh--hcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 34688999999999999988873 2233678889999999889999999999999988889999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHH
Q 007407 555 IALLRKAVTYCPQAEVLWLMG 575 (605)
Q Consensus 555 ~~~lekAl~~~P~~~~l~l~~ 575 (605)
++.|+.|+...|+++.+-..+
T Consensus 696 ~~~~~~a~~~~~~~~~~~~~l 716 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECENSL 716 (886)
T ss_pred HHHHHHHHhcCCCChhhHHHH
Confidence 999999999999987664443
No 289
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.93 E-value=3.2 Score=44.97 Aligned_cols=118 Identities=13% Similarity=0.010 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhC---CCc-hhhHHHHHHHHHHHHHc
Q 007407 440 NTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVA-DRAGSVVTCVAIITNTIEIG---VDE-EDKKRTWVADVEECKKR 514 (605)
Q Consensus 440 ~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~-e~~g~~~~A~~i~~~al~~~---p~~-~~~~~~~~~~a~~~~~~ 514 (605)
+..++++.++..+...+... ......+..+..+ .-..+++.|+..+++++.+. |.- ....+..-.++.++...
T Consensus 24 kIkk~IkClqA~~~~~is~~--veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~ 101 (629)
T KOG2300|consen 24 KIKKCIKCLQAIFQFQISFL--VEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQL 101 (629)
T ss_pred hHHHHHHHHHHHhccCChHH--HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHh
Confidence 35566666655555443321 1223334444333 33456677777777766542 221 12334444555555554
Q ss_pred C-CHHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHcCCHHHHHHHHH
Q 007407 515 G-SIETARAIFSPACTVFLTKK----NIWLKAAQLEKSYGCRESLIALLR 559 (605)
Q Consensus 515 g-~~~~A~~i~~~al~~~P~~~----~~w~~la~l~~~~g~~e~A~~~le 559 (605)
. .+..|+..++++++...+.+ .+.+.++++.....++..|.+++.
T Consensus 102 ~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLa 151 (629)
T KOG2300|consen 102 AQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLA 151 (629)
T ss_pred cCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHh
Confidence 4 66667777777776644432 344556666666666666666644
No 290
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.80 E-value=8.4 Score=39.39 Aligned_cols=124 Identities=12% Similarity=0.011 Sum_probs=67.5
Q ss_pred hcHHHHHHHHHHHHHhC-CCCHH-------HHHHHHH-HHHcC-CHHHHHHHHHHHHHHhcc---Ccc------cccHHH
Q 007407 406 ETYGVARSVLNKARKKL-PKERA-------IWIAAAK-LEANG-NTSMVGKIIERGIRALQG---EEV------VIDRDT 466 (605)
Q Consensus 406 e~~e~A~~vL~~al~~~-p~~~~-------iwi~~a~-Le~~g-~~~~a~~i~~~al~~~p~---~~~------~~~~~~ 466 (605)
++.+-|...+.|+-... ..++. +.++.|. +...+ +++.|...++++++.+.. ... .....+
T Consensus 7 ~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~i 86 (278)
T PF08631_consen 7 GDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSI 86 (278)
T ss_pred CCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHH
Confidence 45666777777776654 22222 3444443 33556 777888888888877633 110 123344
Q ss_pred HHHHHHHHHHcCCH---HHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 007407 467 WMKEAEVADRAGSV---VTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFL 532 (605)
Q Consensus 467 wl~~A~~~e~~g~~---~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P 532 (605)
....+..+...+.. ..|..+++.+-+..|+ .+..++...+.+.+.++.+++..++.+++...+
T Consensus 87 L~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~---~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 87 LRLLANAYLEWDTYESVEKALNALRLLESEYGN---KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC---CcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 44555555554432 3344455445444444 455554445555556666677777777766554
No 291
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.70 E-value=1.9 Score=40.12 Aligned_cols=100 Identities=12% Similarity=-0.081 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 007407 465 DTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQL 544 (605)
Q Consensus 465 ~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l 544 (605)
...+.........+..+.+..++..+--.-|. ...+-+..+.+++..|++.+|+.+|+.+....|..+..--.++.+
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~---~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPE---FPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCC---chHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 44555556666677788888888877777777 667777777788888888888888888877777777666666666
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCC
Q 007407 545 EKSYGCRESLIALLRKAVTYCPQA 568 (605)
Q Consensus 545 ~~~~g~~e~A~~~lekAl~~~P~~ 568 (605)
+...|+. .-+.+-+.+++.+++.
T Consensus 88 L~~~~D~-~Wr~~A~evle~~~d~ 110 (160)
T PF09613_consen 88 LYALGDP-SWRRYADEVLESGADP 110 (160)
T ss_pred HHHcCCh-HHHHHHHHHHhcCCCh
Confidence 6666653 3444555556655543
No 292
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=92.62 E-value=3.8 Score=43.66 Aligned_cols=164 Identities=13% Similarity=0.082 Sum_probs=96.9
Q ss_pred HHHhCCCCHHHHHHHHHh----hcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccc
Q 007407 388 AVECCPLDVELWLALVRL----ETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVI 462 (605)
Q Consensus 388 Al~~~P~~~~lw~aLa~l----e~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~ 462 (605)
.+...|-+++..+.++.+ ++++.|...+++|+=.+.......+...... ..|+ + .++- ....
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~---~---------rL~~-~~~e 98 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGN---C---------RLDY-RRPE 98 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCc---c---------ccCC-cccc
Confidence 456789998888877654 4677888888888744322111111000001 1111 0 0000 0112
Q ss_pred cHHHHH---HHHHHHHHcCCHHHHHHHHHHHHHhCCC-chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-C----
Q 007407 463 DRDTWM---KEAEVADRAGSVVTCVAIITNTIEIGVD-EEDKKRTWVADVEECKKRGSIETARAIFSPACTVFL-T---- 533 (605)
Q Consensus 463 ~~~~wl---~~A~~~e~~g~~~~A~~i~~~al~~~p~-~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P-~---- 533 (605)
++..|+ .+...+.+.|.+.||.++.+-.++++|. ||.....++. ...++.++++=-+.+++....... +
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID--~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~ 176 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFID--YYALRSRQYQWLIDFSESPLAKCYRNWLSL 176 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHH--HHHHhcCCHHHHHHHHHhHhhhhhhhhhhh
Confidence 444444 4567778899999999999999999998 4433333332 345667888777777776554211 1
Q ss_pred CHHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHHhCC
Q 007407 534 KKNIWLKAAQLEKSYGCR---------------ESLIALLRKAVTYCP 566 (605)
Q Consensus 534 ~~~~w~~la~l~~~~g~~---------------e~A~~~lekAl~~~P 566 (605)
-+.+-+..+-.+...++. +.|...+++|+...|
T Consensus 177 lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 177 LPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred CccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 123445555555556665 889999999987765
No 293
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=92.55 E-value=2.4 Score=37.89 Aligned_cols=94 Identities=17% Similarity=0.226 Sum_probs=56.0
Q ss_pred HHHHHHHHH-HH-H--cC-CHHHHHHHHHHHHHHhccCcc----cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 007407 426 RAIWIAAAK-LE-A--NG-NTSMVGKIIERGIRALQGEEV----VIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVD 496 (605)
Q Consensus 426 ~~iwi~~a~-Le-~--~g-~~~~a~~i~~~al~~~p~~~~----~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~ 496 (605)
..+|..+.+ ++ . .| .......+++++++.+..... +--..+|+.+|..+ .....+|..+...+.-
T Consensus 22 L~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~------~dp~~if~~L~~~~IG 95 (125)
T smart00777 22 LDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC------DEPRELFQFLYSKGIG 95 (125)
T ss_pred hHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCcc
Confidence 456777765 32 1 22 344566777777777643311 12346788777654 2345566666655443
Q ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007407 497 EEDKKRTWVADVEECKKRGSIETARAIFSP 526 (605)
Q Consensus 497 ~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~ 526 (605)
......|..+|..+...|++.+|.++|+.
T Consensus 96 -~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 96 -TKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred -hhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 22556677777777777777777777753
No 294
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=92.53 E-value=0.19 Score=31.45 Aligned_cols=31 Identities=16% Similarity=0.092 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCC
Q 007407 571 LWLMGAKEKWLAGDVPATRDILQEAYAAIPN 601 (605)
Q Consensus 571 l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~ 601 (605)
.|..+|..++..|+++.|...|.++++.+|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 3445555555555555555555555555553
No 295
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.28 E-value=0.26 Score=33.54 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=12.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 007407 538 WLKAAQLEKSYGCRESLIALLRKAV 562 (605)
Q Consensus 538 w~~la~l~~~~g~~e~A~~~lekAl 562 (605)
|..+|.++.+.|++++|+.+|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555533
No 296
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.07 E-value=9.2 Score=35.66 Aligned_cols=83 Identities=16% Similarity=0.076 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 007407 502 RTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWL 581 (605)
Q Consensus 502 ~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~ 581 (605)
..++..+..-...++++.+..++.-.--+.|+.+.+-..-|+++...|++.+|+.+|+.+....|..+..--+++.++..
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 34455555666778899999999988888999999999999999999999999999999887777766554444554444
Q ss_pred cCC
Q 007407 582 AGD 584 (605)
Q Consensus 582 ~gd 584 (605)
.||
T Consensus 91 ~~D 93 (160)
T PF09613_consen 91 LGD 93 (160)
T ss_pred cCC
Confidence 444
No 297
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=91.89 E-value=2 Score=38.41 Aligned_cols=40 Identities=13% Similarity=0.023 Sum_probs=20.3
Q ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 007407 555 IALLRKAVTYC--PQAEVLWLMGAKEKWLAGDVPATRDILQE 594 (605)
Q Consensus 555 ~~~lekAl~~~--P~~~~l~l~~a~~~~~~gd~~~Ar~il~k 594 (605)
.++|+...... -..+.+|..+|..+...|++.+|.+||..
T Consensus 83 ~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 83 RELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred HHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 34444443332 23355555556555556666666665543
No 298
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=91.85 E-value=0.78 Score=38.51 Aligned_cols=46 Identities=15% Similarity=-0.011 Sum_probs=25.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 007407 522 AIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQ 567 (605)
Q Consensus 522 ~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~ 567 (605)
.-++..++.+|++..+.+.+|..+...|+++.|++.|-.++..+++
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~ 54 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRD 54 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TT
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 3455555666666666666666666666666666666666665543
No 299
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=91.76 E-value=7.7 Score=43.48 Aligned_cols=45 Identities=13% Similarity=0.088 Sum_probs=28.0
Q ss_pred HcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 007407 547 SYGCRESLIALLRKAVTYCPQA-EVLWLMGAKEKWLAGDVPATRDILQEA 595 (605)
Q Consensus 547 ~~g~~e~A~~~lekAl~~~P~~-~~l~l~~a~~~~~~gd~~~Ar~il~kA 595 (605)
..+++.+|..+-++ .|+. +.+++.||+.+....++++|.+.|-+|
T Consensus 785 e~~~W~eAFalAe~----hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 785 ETQRWDEAFALAEK----HPEFKDDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred ecccchHhHhhhhh----CccccccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 44555555555443 4544 567888888766666677776666655
No 300
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=91.69 E-value=1.6 Score=38.04 Aligned_cols=47 Identities=9% Similarity=-0.001 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHC
Q 007407 553 SLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAI 599 (605)
Q Consensus 553 ~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~ 599 (605)
.+.+.|.+++..+|..+...+.+|+.+-..-.|++|...-.+++.+.
T Consensus 62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 62 GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 46788999999999998888888886555555777777777777653
No 301
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.47 E-value=11 Score=39.26 Aligned_cols=120 Identities=6% Similarity=-0.140 Sum_probs=86.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCC---HHHHHHHHHHHHH
Q 007407 472 EVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTV-FLTK---KNIWLKAAQLEKS 547 (605)
Q Consensus 472 ~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~-~P~~---~~~w~~la~l~~~ 547 (605)
...--.|...+|...+.+++.-.|. +.-.|..-=..+.-.|+.+..+..+++++-. +|+- ..+.-.++.-+..
T Consensus 111 ai~~~~g~~h~a~~~wdklL~d~Pt---Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E 187 (491)
T KOG2610|consen 111 AILWGRGKHHEAAIEWDKLLDDYPT---DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE 187 (491)
T ss_pred HHhhccccccHHHHHHHHHHHhCch---hhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH
Confidence 3344567778888888899988887 4545544444566678888888888888866 5543 4444456667778
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 007407 548 YGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQE 594 (605)
Q Consensus 548 ~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~k 594 (605)
.|-+++|.+.-++|++++|.+.-.....+.++...|++.++.+...+
T Consensus 188 ~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 188 CGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred hccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 89999999999999999987655555556666668888888776554
No 302
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=91.46 E-value=0.37 Score=31.98 Aligned_cols=29 Identities=17% Similarity=0.166 Sum_probs=19.6
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007407 550 CRESLIALLRKAVTYCPQAEVLWLMGAKEK 579 (605)
Q Consensus 550 ~~e~A~~~lekAl~~~P~~~~l~l~~a~~~ 579 (605)
.++.|+.+|++.+..+|+ +..|+.||+++
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyAkFE 30 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYAKFE 30 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHHHhh
Confidence 356677777777777663 66777777654
No 303
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=91.45 E-value=0.31 Score=30.37 Aligned_cols=31 Identities=13% Similarity=0.134 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 007407 537 IWLKAAQLEKSYGCRESLIALLRKAVTYCPQ 567 (605)
Q Consensus 537 ~w~~la~l~~~~g~~e~A~~~lekAl~~~P~ 567 (605)
+|..+|.++...|+++.|...|++++...|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4555666666666666666666666655553
No 304
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.43 E-value=0.37 Score=32.77 Aligned_cols=29 Identities=14% Similarity=-0.007 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHC
Q 007407 571 LWLMGAKEKWLAGDVPATRDILQEAYAAI 599 (605)
Q Consensus 571 l~l~~a~~~~~~gd~~~Ar~il~kAl~~~ 599 (605)
.|..+|.++.+.|++++|..+|++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 37789999999999999999999966543
No 305
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=91.27 E-value=12 Score=42.39 Aligned_cols=160 Identities=14% Similarity=0.137 Sum_probs=74.8
Q ss_pred HHhCCCcHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH--H--------------HHHHhhcHHHHHHHHHHHHHhC
Q 007407 359 LDEIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELW--L--------------ALVRLETYGVARSVLNKARKKL 422 (605)
Q Consensus 359 le~~P~~~~lw~~l~~le~~e~A~~~l~rAl~~~P~~~~lw--~--------------aLa~le~~e~A~~vL~~al~~~ 422 (605)
++.+|+ ++||..+++.--..-+...-+.|.-.|.+...+- . .-+-++++++|.+.|-.+=...
T Consensus 686 iEdnPH-prLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD 764 (1189)
T KOG2041|consen 686 IEDNPH-PRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD 764 (1189)
T ss_pred HhcCCc-hHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh
Confidence 345565 7999998775422223333333333333322210 0 1123456788888775443221
Q ss_pred CC-----CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHH-------
Q 007407 423 PK-----ERAIWIAAAKLEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNT------- 490 (605)
Q Consensus 423 p~-----~~~iwi~~a~Le~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~a------- 490 (605)
-. ..--|+...+|.++|..+.-.+..+.|....... --+...|...+.++...|+.+.-.+.+-..
T Consensus 765 LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~--fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE 842 (1189)
T KOG2041|consen 765 LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGET--FAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELE 842 (1189)
T ss_pred hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHH
Confidence 00 0111555445554442222222223333222111 014567988888888888665444333221
Q ss_pred --HHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHH
Q 007407 491 --IEIGVDEEDKKRTWVADVEECKKRGSIETARAIF 524 (605)
Q Consensus 491 --l~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~ 524 (605)
...-|+ +..++-..|+.+.+.|.-++|...|
T Consensus 843 ~la~~Lpe---~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 843 VLARTLPE---DSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred HHHHhcCc---ccchHHHHHHHHHhhchHHHHHHHH
Confidence 111233 4444555566666666666655554
No 306
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.19 E-value=4.1 Score=44.65 Aligned_cols=152 Identities=23% Similarity=0.250 Sum_probs=87.3
Q ss_pred hcHHHHHHHHHHHHHhCCCCH-HHHHHHHH-HHHcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHH
Q 007407 406 ETYGVARSVLNKARKKLPKER-AIWIAAAK-LEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTC 483 (605)
Q Consensus 406 e~~e~A~~vL~~al~~~p~~~-~iwi~~a~-Le~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A 483 (605)
++++.+...+.. -+..|.=+ ......+. |+++|-++.|.++. . +.+. ..+.+.+.|+.+.|
T Consensus 275 ~d~~~v~~~i~~-~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~-------~------D~~~---rFeLAl~lg~L~~A 337 (443)
T PF04053_consen 275 GDFEEVLRMIAA-SNLLPNIPKDQGQSIARFLEKKGYPELALQFV-------T------DPDH---RFELALQLGNLDIA 337 (443)
T ss_dssp T-HHH-----HH-HHTGGG--HHHHHHHHHHHHHTT-HHHHHHHS-------S-------HHH---HHHHHHHCT-HHHH
T ss_pred CChhhhhhhhhh-hhhcccCChhHHHHHHHHHHHCCCHHHHHhhc-------C------ChHH---HhHHHHhcCCHHHH
Confidence 356666555541 12223322 22334444 55777666554332 2 1222 23455678888888
Q ss_pred HHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007407 484 VAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVT 563 (605)
Q Consensus 484 ~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~ 563 (605)
..+.+.. ++...|-.+++....+|+++-|..+|.++- =|..+..++...|+.+...++.+.|..
T Consensus 338 ~~~a~~~--------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 338 LEIAKEL--------DDPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHCCCC--------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHhc--------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 7655322 267799999999999999999999998872 244566678889999888888887766
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 007407 564 YCPQAEVLWLMGAKEKWLAGDVPATRDILQEA 595 (605)
Q Consensus 564 ~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kA 595 (605)
..- ..+. -...+..||++++..+|.++
T Consensus 402 ~~~--~n~a---f~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 402 RGD--INIA---FQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp TT---HHHH---HHHHHHHT-HHHHHHHHHHT
T ss_pred ccC--HHHH---HHHHHHcCCHHHHHHHHHHc
Confidence 542 1111 11234578888888888764
No 307
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.09 E-value=1.5 Score=47.33 Aligned_cols=125 Identities=15% Similarity=0.122 Sum_probs=79.8
Q ss_pred CCCHHHHHHHHHHH-HcCCHHHHHHHHHHH-HHHhccCccc---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 007407 423 PKERAIWIAAAKLE-ANGNTSMVGKIIERG-IRALQGEEVV---IDRDTWMKEAEVADRAGSVVTCVAIITNTIEI---- 493 (605)
Q Consensus 423 p~~~~iwi~~a~Le-~~g~~~~a~~i~~~a-l~~~p~~~~~---~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~---- 493 (605)
.+++...+..+++| ..|++.+|.+++... +...+.-.+. ..--.|-.++-+..+.|.+.-+.-.|.+++..
T Consensus 237 ~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~q 316 (696)
T KOG2471|consen 237 QDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQ 316 (696)
T ss_pred CCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHH
Confidence 34555566666777 788888887776542 1111110000 12234455555555556666666666666631
Q ss_pred ---C--CC------chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 007407 494 ---G--VD------EEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKS 547 (605)
Q Consensus 494 ---~--p~------~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~ 547 (605)
+ |. .-.+..+.+..+-.+...|++-.|..+|.++...|..++-+|+.+|..++.
T Consensus 317 L~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 317 LRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 1 11 011456777888888999999999999999999999999999999988863
No 308
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=90.95 E-value=1 Score=44.24 Aligned_cols=84 Identities=15% Similarity=0.160 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHHHHh------cC-CCHHHHHHHHHHHHHcCCHHH-------HHHHHHHHHHhC--CC----CHHHHHHH
Q 007407 516 SIETARAIFSPACTV------FL-TKKNIWLKAAQLEKSYGCRES-------LIALLRKAVTYC--PQ----AEVLWLMG 575 (605)
Q Consensus 516 ~~~~A~~i~~~al~~------~P-~~~~~w~~la~l~~~~g~~e~-------A~~~lekAl~~~--P~----~~~l~l~~ 575 (605)
.+++|+..|.-|+-. .| ....+++.+|+++...|+.+. |.+.|++|++.. |. ...+.++.
T Consensus 92 t~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLi 171 (214)
T PF09986_consen 92 TLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLI 171 (214)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHH
Confidence 445555555555432 11 135778899999999988554 555555555543 32 25677888
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHC
Q 007407 576 AKEKWLAGDVPATRDILQEAYAAI 599 (605)
Q Consensus 576 a~~~~~~gd~~~Ar~il~kAl~~~ 599 (605)
|.+..+.|++++|...|.+.+..-
T Consensus 172 geL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 172 GELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHhCCHHHHHHHHHHHHcCC
Confidence 999999999999999999998743
No 309
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=90.76 E-value=24 Score=37.15 Aligned_cols=193 Identities=10% Similarity=0.029 Sum_probs=122.2
Q ss_pred hhcHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCccc-----ccHHHHHHHHH
Q 007407 405 LETYGVARSVLNKARKKLPK--E----RAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVV-----IDRDTWMKEAE 472 (605)
Q Consensus 405 le~~e~A~~vL~~al~~~p~--~----~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~-----~~~~~wl~~A~ 472 (605)
+.-++.+.+.|++|++.-.. + -.+...++.|. +..+++++.-+..+|......-++. ...-..+.++.
T Consensus 135 ls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaV 214 (518)
T KOG1941|consen 135 LSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAV 214 (518)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHH
Confidence 34678888888888876432 2 34677788887 7788888888888887776554331 12334455677
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCC---chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC------CHHHHHHHHH
Q 007407 473 VADRAGSVVTCVAIITNTIEIGVD---EEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLT------KKNIWLKAAQ 543 (605)
Q Consensus 473 ~~e~~g~~~~A~~i~~~al~~~p~---~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~------~~~~w~~la~ 543 (605)
.+...|..-.|.+..+++.++... .+....-..-.+++|...|+.+.|..-|+.|....-. ...++...|.
T Consensus 215 alR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Ak 294 (518)
T KOG1941|consen 215 ALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAK 294 (518)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 778888887788777777665322 1223444566789999999999999999999876421 1222222232
Q ss_pred HHHHcCCH-----HHHHHHHHHHHHhCC----CC--HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 007407 544 LEKSYGCR-----ESLIALLRKAVTYCP----QA--EVLWLMGAKEKWLAGDVPATRDILQEAYA 597 (605)
Q Consensus 544 l~~~~g~~-----e~A~~~lekAl~~~P----~~--~~l~l~~a~~~~~~gd~~~Ar~il~kAl~ 597 (605)
......-. =.|++.-.++++... +. -.+...++.+|...|.-++=+..+.+|-+
T Consensus 295 c~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~ 359 (518)
T KOG1941|consen 295 CLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHE 359 (518)
T ss_pred HHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 22211111 235566666655432 22 34567788888778887777777666544
No 310
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=89.01 E-value=20 Score=36.73 Aligned_cols=56 Identities=13% Similarity=-0.068 Sum_probs=43.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007407 505 VADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRK 560 (605)
Q Consensus 505 ~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lek 560 (605)
..-+..|...|.+.+|..+.++++.++|-+.+.|.-+..++...|+--++.+.|++
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence 33466777888888888888888888888888888888888888876666665554
No 311
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=88.75 E-value=4.6 Score=33.82 Aligned_cols=48 Identities=13% Similarity=0.007 Sum_probs=39.1
Q ss_pred HHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 007407 484 VAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTK 534 (605)
Q Consensus 484 ~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~ 534 (605)
.+-++..+..+|+ +....+.+|..+...|++++|...+-.+++.+|+.
T Consensus 8 ~~al~~~~a~~P~---D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 8 IAALEAALAANPD---DLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHSTT----HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred HHHHHHHHHcCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 3456778888888 78899999999999999999999999999988775
No 312
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=88.00 E-value=1.2e+02 Score=41.24 Aligned_cols=171 Identities=15% Similarity=0.146 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHhCCC---CHHHHHHHHHHHHcCCHHHHHHHHHHHH---HHhccCcc---cccHHHH--HHHHHHHHHc
Q 007407 409 GVARSVLNKARKKLPK---ERAIWIAAAKLEANGNTSMVGKIIERGI---RALQGEEV---VIDRDTW--MKEAEVADRA 477 (605)
Q Consensus 409 e~A~~vL~~al~~~p~---~~~iwi~~a~Le~~g~~~~a~~i~~~al---~~~p~~~~---~~~~~~w--l~~A~~~e~~ 477 (605)
.+-+.++...+...|+ +...|..+...- +.-+....+.|.-.. ...+..+. ......| ...|..+.+.
T Consensus 2671 ~d~Ksil~~Wr~RlP~~~Dd~~~Wsdl~~WR-q~~y~~I~~~~~~~~~~~~~~~ns~~~~~Gyhe~A~~in~fakvArkh 2749 (3550)
T KOG0889|consen 2671 QDIKSILQTWRDRLPNVWDDMNQWSDLITWR-QHAYSMINKAYLPLVPYKQNASNSNNLYRGYHELAWAINRFAKVARKH 2749 (3550)
T ss_pred HHHHHHHHHHhhcCCCcchhHHHHHHHHHHH-HHHHHHHHHHhcccchhhhccCCcchHHHhHHHHHHHHHHHHHHHHhc
Confidence 4456677777778885 445566654432 111122222221110 11111111 0122233 3456777788
Q ss_pred CCHHHHHHHHHHHHHhCCCch-hhHHHHHHHHHHHHHc-CCHHHHHHHHHHH-HHhcCCC--HHHHHHHHHHHHHcCCHH
Q 007407 478 GSVVTCVAIITNTIEIGVDEE-DKKRTWVADVEECKKR-GSIETARAIFSPA-CTVFLTK--KNIWLKAAQLEKSYGCRE 552 (605)
Q Consensus 478 g~~~~A~~i~~~al~~~p~~~-~~~~~~~~~a~~~~~~-g~~~~A~~i~~~a-l~~~P~~--~~~w~~la~l~~~~g~~e 552 (605)
|-++-|...+.++..+---+. +-..-.-+.+..+... +....+.++.+.. +..+++. ..++..-|.+..+.|..+
T Consensus 2750 ~l~~vcl~~L~~iytlp~veiqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q~aeff~lkG~f~~kL~~~e 2829 (3550)
T KOG0889|consen 2750 GLPDVCLNQLAKIYTLPNVEIQDAFQKLREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQKAEFFTLKGMFLEKLGKFE 2829 (3550)
T ss_pred CChHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHHHHHHHHhhhHHHHHhcCcc
Confidence 888888888888766521111 1111222334444332 2444455555443 3445553 455666799999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007407 553 SLIALLRKAVTYCPQAEVLWLMGAKEKW 580 (605)
Q Consensus 553 ~A~~~lekAl~~~P~~~~l~l~~a~~~~ 580 (605)
+|.+.|..|++++-.-+..|.++|....
T Consensus 2830 eAn~~fs~AvQi~~~l~KaW~~Wg~y~~ 2857 (3550)
T KOG0889|consen 2830 EANKAFSAAVQIDDGLGKAWAEWGKYLD 2857 (3550)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 9999999999998777899999988543
No 313
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=87.84 E-value=37 Score=35.32 Aligned_cols=22 Identities=18% Similarity=0.376 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhCCCCHHHHHH
Q 007407 553 SLIALLRKAVTYCPQAEVLWLM 574 (605)
Q Consensus 553 ~A~~~lekAl~~~P~~~~l~l~ 574 (605)
.|.+.+.+|++.+|+-|...+.
T Consensus 380 ~AvEAihRAvEFNPHVPkYLLE 401 (556)
T KOG3807|consen 380 NAVEAIHRAVEFNPHVPKYLLE 401 (556)
T ss_pred HHHHHHHHHhhcCCCCcHHHHH
Confidence 5788899999999877665443
No 314
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=87.58 E-value=0.74 Score=45.11 Aligned_cols=60 Identities=13% Similarity=0.232 Sum_probs=49.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH
Q 007407 473 VADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKK 535 (605)
Q Consensus 473 ~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~ 535 (605)
...+.|+.+.+.+.|.+++..-|+ -...|+..+......|+++.|...|++.++++|.+.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~---w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPE---WAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCch---hhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 344567777888888899888887 778888888888888999999999999999988763
No 315
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.52 E-value=5.8 Score=40.56 Aligned_cols=79 Identities=10% Similarity=-0.016 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHH
Q 007407 500 KKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCP------QAEVLWL 573 (605)
Q Consensus 500 ~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P------~~~~l~l 573 (605)
...++.++++.+...++++.+...+++.+..+|-+..+|..+...+.+.|+...|+..|++.-+..- -.+.++.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 4566778888899999999999999999999999999999999999999999999999988766421 1356666
Q ss_pred HHHHH
Q 007407 574 MGAKE 578 (605)
Q Consensus 574 ~~a~~ 578 (605)
.|.+.
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 66554
No 316
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=87.43 E-value=7.4 Score=43.26 Aligned_cols=90 Identities=13% Similarity=-0.047 Sum_probs=40.4
Q ss_pred cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCCCCHHHHHH------HHHHHHHcCChH
Q 007407 514 RGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRE-SLIALLRKAVTYCPQAEVLWLM------GAKEKWLAGDVP 586 (605)
Q Consensus 514 ~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e-~A~~~lekAl~~~P~~~~l~l~------~a~~~~~~gd~~ 586 (605)
.+....+...+..++..+|++..+...|+......|... .+....+-+....|++..+.-. .++.....|+..
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (620)
T COG3914 80 LADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTA 159 (620)
T ss_pred cccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHH
Confidence 344444444555555555555555555544444333322 2333333344444444332221 233333455555
Q ss_pred HHHHHHHHHHHHCCCCC
Q 007407 587 ATRDILQEAYAAIPNSE 603 (605)
Q Consensus 587 ~Ar~il~kAl~~~P~~~ 603 (605)
++...+.+++.+.|.++
T Consensus 160 ~~~~~l~~~~d~~p~~~ 176 (620)
T COG3914 160 EAELALERAVDLLPKYP 176 (620)
T ss_pred HHHHHHHHHHHhhhhhh
Confidence 55555555555555443
No 317
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.17 E-value=54 Score=36.40 Aligned_cols=62 Identities=15% Similarity=0.062 Sum_probs=38.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC------CC-CHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHCCC
Q 007407 540 KAAQLEKSYGCRESLIALLRKAVTYC------PQ-AEVLWLMGAKEKWLAGD-VPATRDILQEAYAAIPN 601 (605)
Q Consensus 540 ~la~l~~~~g~~e~A~~~lekAl~~~------P~-~~~l~l~~a~~~~~~gd-~~~Ar~il~kAl~~~P~ 601 (605)
.+|.+.+..|+...|..+|+.++... |- .|..++.+|-++|..|. +.+|+..|.+|-+...+
T Consensus 454 L~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 454 LKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 34666666777777777777666321 11 15566777777777555 77777777777665543
No 318
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=87.05 E-value=38 Score=34.56 Aligned_cols=149 Identities=13% Similarity=0.093 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHH
Q 007407 441 TSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETA 520 (605)
Q Consensus 441 ~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A 520 (605)
..+|..+++.+-...|. ....+.....++.+.++.+.+..++.+++..-+-.+.+....+..+..+..... ..|
T Consensus 103 ~~ka~~~l~~l~~e~~~-----~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~-~~a 176 (278)
T PF08631_consen 103 VEKALNALRLLESEYGN-----KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSP-ELA 176 (278)
T ss_pred HHHHHHHHHHHHHhCCC-----CcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCc-HHH
Confidence 44455555555444333 233443344455556667777777777776543112345555555544444433 455
Q ss_pred HHHHHHHHHh--cCCCHHHHHHHHHHHH-----HcCC------HHHHHHHHHHHHHhC--CCC--------HHHHHHHHH
Q 007407 521 RAIFSPACTV--FLTKKNIWLKAAQLEK-----SYGC------RESLIALLRKAVTYC--PQA--------EVLWLMGAK 577 (605)
Q Consensus 521 ~~i~~~al~~--~P~~~~~w~~la~l~~-----~~g~------~e~A~~~lekAl~~~--P~~--------~~l~l~~a~ 577 (605)
...+.+.+.. .|..-. |.....+.. ..++ .+.+..++....... |-+ ..+|.. |.
T Consensus 177 ~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~-~~ 254 (278)
T PF08631_consen 177 AFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNK-GK 254 (278)
T ss_pred HHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HH
Confidence 5555555432 344333 544333322 1111 334444454332221 211 224544 55
Q ss_pred HHHHcCChHHHHHHHHHHHH
Q 007407 578 EKWLAGDVPATRDILQEAYA 597 (605)
Q Consensus 578 ~~~~~gd~~~Ar~il~kAl~ 597 (605)
..++.++++.|...|+-|+.
T Consensus 255 ~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred HHHhhcCHHHHHHHHHHHHH
Confidence 56689999999999997763
No 319
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.95 E-value=8.2 Score=35.50 Aligned_cols=51 Identities=14% Similarity=0.079 Sum_probs=23.3
Q ss_pred cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007407 514 RGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTY 564 (605)
Q Consensus 514 ~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~ 564 (605)
.++++++..++.-.--+.|+.+.+-..-++++...|++.+|+.+|+.....
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 344444444444443444444444444444444444444444444444433
No 320
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=86.94 E-value=64 Score=37.02 Aligned_cols=183 Identities=12% Similarity=0.122 Sum_probs=105.0
Q ss_pred HHHHHHHHHHhCCCC----HHHHHHHHHHH--HcCCHHHHHHHHHHHHHHhccCccc-ccHHHHHHHHHHHHHcCCHHHH
Q 007407 411 ARSVLNKARKKLPKE----RAIWIAAAKLE--ANGNTSMVGKIIERGIRALQGEEVV-IDRDTWMKEAEVADRAGSVVTC 483 (605)
Q Consensus 411 A~~vL~~al~~~p~~----~~iwi~~a~Le--~~g~~~~a~~i~~~al~~~p~~~~~-~~~~~wl~~A~~~e~~g~~~~A 483 (605)
|.+.|+-+++..+-. ..+.+.+|.+. ...+.+.|..++++++.....++.. .....-...+..+.+.+... |
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a 118 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-A 118 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-H
Confidence 555666555443322 33456667533 6667888888888887776554321 11222223466677776444 8
Q ss_pred HHHHHHHHHhCCCchhhHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhc--CCCHHHHHHH----HHHHHHcCCHHHH
Q 007407 484 VAIITNTIEIGVDEEDKKR---TWVADVEECKKRGSIETARAIFSPACTVF--LTKKNIWLKA----AQLEKSYGCRESL 554 (605)
Q Consensus 484 ~~i~~~al~~~p~~~~~~~---~~~~~a~~~~~~g~~~~A~~i~~~al~~~--P~~~~~w~~l----a~l~~~~g~~e~A 554 (605)
...+++.|...-......- ..+..+.++...+++..|...++.+.... ++++.+...+ +.+....+..+.+
T Consensus 119 ~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~ 198 (608)
T PF10345_consen 119 LKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDV 198 (608)
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhH
Confidence 8888887775321000111 11222333434478999999999888765 4555444332 4555567878888
Q ss_pred HHHHHHHHHhCC----------CCHHHHHHHHHHHH--HcCChHHHHHHHHH
Q 007407 555 IALLRKAVTYCP----------QAEVLWLMGAKEKW--LAGDVPATRDILQE 594 (605)
Q Consensus 555 ~~~lekAl~~~P----------~~~~l~l~~a~~~~--~~gd~~~Ar~il~k 594 (605)
.+.++++....- ..-.+|...-++.. ..|+++.+...+.+
T Consensus 199 ~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~ 250 (608)
T PF10345_consen 199 LELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQ 250 (608)
T ss_pred HHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888854321 12345655555443 37776666655443
No 321
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=86.23 E-value=4.6 Score=30.27 Aligned_cols=31 Identities=16% Similarity=0.052 Sum_probs=14.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH
Q 007407 508 VEECKKRGSIETARAIFSPACTVFLTKKNIW 538 (605)
Q Consensus 508 a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w 538 (605)
|..+.+.|++++|+...+.+|+..|++..+.
T Consensus 8 Aig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 8 AIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 3334445555555555555555555554443
No 322
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=86.17 E-value=31 Score=32.72 Aligned_cols=63 Identities=17% Similarity=0.168 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007407 502 RTWVADVEECKKRGSIETARAIFSPACTVFLT---KKNIWLKAAQLEKSYGCRESLIALLRKAVTY 564 (605)
Q Consensus 502 ~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~---~~~~w~~la~l~~~~g~~e~A~~~lekAl~~ 564 (605)
..|..++..+.+.|+++.|...|.++...... ...+++.+..+....+++..+...+.+|-..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34555566666666666666666665554322 2455555556666666666666666655444
No 323
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=86.04 E-value=4.9 Score=30.13 Aligned_cols=39 Identities=10% Similarity=-0.071 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 007407 536 NIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLM 574 (605)
Q Consensus 536 ~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~ 574 (605)
..++.+|..+.+.|++++|+...+.+|+..|++..+-..
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L 40 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 356677788888999999999999999999988766433
No 324
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.98 E-value=86 Score=37.59 Aligned_cols=130 Identities=13% Similarity=0.117 Sum_probs=73.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCHHHHHHH
Q 007407 467 WMKEAEVADRAGSVVTCVAIITNTIEIGVD----EEDKKRTWVADVEECKKRGSIETARAIFSPACTVF-LTKKNIWLKA 541 (605)
Q Consensus 467 wl~~A~~~e~~g~~~~A~~i~~~al~~~p~----~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~-P~~~~~w~~l 541 (605)
|-..|..|++.|-...|.+.|...-.+--. ...+++ |+ -.+...-.++.+.++++..+..+ -.+..+-...
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pE-wL---v~yFg~lsve~s~eclkaml~~NirqNlQi~VQv 684 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPE-WL---VNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQV 684 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHH-HH---HHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 888999999999888887655443322100 000111 21 22334445667777776666543 2344443333
Q ss_pred HHHHHHcCCHHHHHHHHHHH------------HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCC
Q 007407 542 AQLEKSYGCRESLIALLRKA------------VTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIP 600 (605)
Q Consensus 542 a~l~~~~g~~e~A~~~lekA------------l~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P 600 (605)
+.=|..+=..+..+++|+.- +-...++|.+.+.|.....+.|++.+...|....--.+|
T Consensus 685 atky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~Ydp 755 (1666)
T KOG0985|consen 685 ATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDP 755 (1666)
T ss_pred HHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCH
Confidence 33332222233444444432 112357789999999999999999998888765443333
No 325
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.55 E-value=8 Score=43.08 Aligned_cols=80 Identities=16% Similarity=0.122 Sum_probs=44.8
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH-----
Q 007407 511 CKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTY--------CPQAEVLWLMGAK----- 577 (605)
Q Consensus 511 ~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~--------~P~~~~l~l~~a~----- 577 (605)
..+.|+++.|..+..++ ++..=|..||.+..+.|++..|.++|.+|... +..+......+|.
T Consensus 647 al~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~ 721 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQ 721 (794)
T ss_pred hhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhh
Confidence 44455556665554433 44555666666666666666666666665322 1122222122211
Q ss_pred --------HHHHcCChHHHHHHHHHH
Q 007407 578 --------EKWLAGDVPATRDILQEA 595 (605)
Q Consensus 578 --------~~~~~gd~~~Ar~il~kA 595 (605)
.+|..|++++|.++|.+.
T Consensus 722 g~~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 722 GKNNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred cccchHHHHHHHcCCHHHHHHHHHhc
Confidence 467899999999998764
No 326
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.55 E-value=90 Score=37.44 Aligned_cols=187 Identities=19% Similarity=0.222 Sum_probs=102.5
Q ss_pred CcHHHHHHHHH--hC--CHHHHHHHHHHHHHhCCCCHHHHHHHH----HhhcHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 007407 364 DSVRLWKALVE--IS--SEEEARILLHRAVECCPLDVELWLALV----RLETYGVARSVLNKARKKLPK---ERAIWIAA 432 (605)
Q Consensus 364 ~~~~lw~~l~~--le--~~e~A~~~l~rAl~~~P~~~~lw~aLa----~le~~e~A~~vL~~al~~~p~---~~~iwi~~ 432 (605)
+.+.+|..++. |. ...+|+.-|-+| .+|. .+.... +.+.|++-.+.|..|++.... +.++.+++
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika--dDps---~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~Ay 1176 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA--DDPS---NYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAY 1176 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc--CCcH---HHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHH
Confidence 45678887753 32 457888777665 2343 334333 345788888889888887643 45566666
Q ss_pred HHH------H--HcC-CHHHHHHHHHHHHHHhccCc---ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhh
Q 007407 433 AKL------E--ANG-NTSMVGKIIERGIRALQGEE---VVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDK 500 (605)
Q Consensus 433 a~L------e--~~g-~~~~a~~i~~~al~~~p~~~---~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~ 500 (605)
|+. | -.| +.....++=+++++.---.. ...+.+-|.++|..+...|.+..|....+++ + +
T Consensus 1177 Akt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA-----n---s 1248 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA-----N---S 1248 (1666)
T ss_pred HHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc-----c---c
Confidence 643 2 223 22222222222221100000 0013456777777777777666665555554 1 5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 007407 501 KRTWVADVEECKKRGSIETARAIFSPACTVF-LTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQA 568 (605)
Q Consensus 501 ~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~-P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~ 568 (605)
..+|-.-...|+..+.|.-|.-+ -++ --...=+-.+...|...|-+++.+.+++.++-+.--|
T Consensus 1249 ~ktWK~VcfaCvd~~EFrlAQiC-----GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAH 1312 (1666)
T KOG0985|consen 1249 TKTWKEVCFACVDKEEFRLAQIC-----GLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAH 1312 (1666)
T ss_pred hhHHHHHHHHHhchhhhhHHHhc-----CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHH
Confidence 56777766666666554433221 111 0122334456667777888888888888877654333
No 327
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=85.36 E-value=23 Score=34.85 Aligned_cols=64 Identities=11% Similarity=0.133 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhc--CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH
Q 007407 518 ETARAIFSPACTVF--LT----KKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQA-EVLWLMGAKEKWL 581 (605)
Q Consensus 518 ~~A~~i~~~al~~~--P~----~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~-~~l~l~~a~~~~~ 581 (605)
..|...|.++++.. |. ...+.+.+|.+..+.|++++|...|.+++..--.+ +......|+..|.
T Consensus 142 ~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR~~w~ 212 (214)
T PF09986_consen 142 RKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMARDQWQ 212 (214)
T ss_pred HHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHH
Confidence 45666666666543 32 25778888999999999999999999999864222 3456677776664
No 328
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=85.03 E-value=3.8 Score=44.44 Aligned_cols=118 Identities=13% Similarity=0.019 Sum_probs=86.4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCC---ch--hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Q 007407 463 DRDTWMKEAEVADRAGSVVTCVAIITNT-IEIGVD---EE--DKKRTWVADVEECKKRGSIETARAIFSPACTV------ 530 (605)
Q Consensus 463 ~~~~wl~~A~~~e~~g~~~~A~~i~~~a-l~~~p~---~~--~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~------ 530 (605)
+....+..+..+.-.|++..|...+-.. +.-.+. -+ ..--+|..++-+..+.+.+.-+..+|.+||+.
T Consensus 239 s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~ 318 (696)
T KOG2471|consen 239 SSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLR 318 (696)
T ss_pred CcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHh
Confidence 4455556677777788887777665432 111111 01 02335777787888889999999999999961
Q ss_pred ---cC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007407 531 ---FL---------TKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKW 580 (605)
Q Consensus 531 ---~P---------~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~ 580 (605)
-| ....+.+..|.++.-.|++-.|.++|.+|+..+-.+|.+|+.+|.+..
T Consensus 319 ~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 319 NGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCI 380 (696)
T ss_pred ccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 11 235788999999999999999999999999998888999999999654
No 329
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.39 E-value=38 Score=32.17 Aligned_cols=58 Identities=7% Similarity=-0.065 Sum_probs=24.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007407 506 ADVEECKKRGSIETARAIFSPAC-TVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVT 563 (605)
Q Consensus 506 ~~a~~~~~~g~~~~A~~i~~~al-~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~ 563 (605)
.-+.+++..|.|+....-.+..- .-+|-..++--.|+..-.+.|++..|.+.|+....
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 33444444444444433333221 12333344444444444444555555555444443
No 330
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=83.99 E-value=7.6 Score=33.82 Aligned_cols=99 Identities=16% Similarity=0.176 Sum_probs=57.8
Q ss_pred HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCchhhHHHHHHHHHHHHHcC
Q 007407 437 ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEI-GVDEEDKKRTWVADVEECKKRG 515 (605)
Q Consensus 437 ~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~-~p~~~~~~~~~~~~a~~~~~~g 515 (605)
..||.-+|.++++..+...... ...|+ ....+|.+- ++.+-.. +|+ -...++
T Consensus 8 ~rGnhiKAL~iied~i~~h~~~-----~~~~~----lh~~QG~if-----~~lA~~ten~d---~k~~yL---------- 60 (111)
T PF04781_consen 8 ARGNHIKALEIIEDLISRHGED-----ESSWL----LHRLQGTIF-----YKLAKKTENPD---VKFRYL---------- 60 (111)
T ss_pred HccCHHHHHHHHHHHHHHccCC-----CchHH----HHHHHhHHH-----HHHHHhccCch---HHHHHH----------
Confidence 6788888888888887766543 23343 223344211 1111111 222 222221
Q ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007407 516 SIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTY 564 (605)
Q Consensus 516 ~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~ 564 (605)
-.+...|.++..+.|.....++.+|.-+....-|+++..--+++|..
T Consensus 61 --l~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 61 --LGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred --HHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 34677899999999999888887776655555566666666666654
No 331
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=83.62 E-value=6.4 Score=40.24 Aligned_cols=64 Identities=16% Similarity=0.137 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007407 535 KNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAA 598 (605)
Q Consensus 535 ~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~ 598 (605)
..++..++..+...|+++.+...+++.+..+|.++.+|..+-..+.+.|+...|+..|.+.-+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 4677788889999999999999999999999999999999999999999999999999988764
No 332
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.06 E-value=39 Score=31.20 Aligned_cols=75 Identities=15% Similarity=-0.059 Sum_probs=57.2
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCH
Q 007407 474 ADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCR 551 (605)
Q Consensus 474 ~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~ 551 (605)
....+.+..+..++...--+-|+ ...+-+-.+-+++..|++.+|..+|+...+.-|..+-.--.++..+.-.|+.
T Consensus 20 aL~~~d~~D~e~lLdALrvLrP~---~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 20 ALRSADPYDAQAMLDALRVLRPN---LKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred HHhcCCHHHHHHHHHHHHHhCCC---ccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 33466788888888887777887 6666677777899999999999999999888777765555556666666653
No 333
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=82.91 E-value=3 Score=28.44 Aligned_cols=29 Identities=21% Similarity=0.212 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007407 536 NIWLKAAQLEKSYGCRESLIALLRKAVTY 564 (605)
Q Consensus 536 ~~w~~la~l~~~~g~~e~A~~~lekAl~~ 564 (605)
.++..+|.++...|++++|..++++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45667777777778888888888877765
No 334
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.87 E-value=38 Score=34.30 Aligned_cols=94 Identities=17% Similarity=0.123 Sum_probs=57.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 007407 506 ADVEECKKRGSIETARAIFSPACTVFLT------------KKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWL 573 (605)
Q Consensus 506 ~~a~~~~~~g~~~~A~~i~~~al~~~P~------------~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l 573 (605)
.++.++...+.|..-..++++.-....+ -..+|..-.++|-..++-.....+|++|+..-.--|.-.+
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI 229 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI 229 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH
Confidence 3566666667677666666655443321 1244555567777777778888999999876422222122
Q ss_pred H------HHHHHHHcCChHHHHHHHHHHHHHC
Q 007407 574 M------GAKEKWLAGDVPATRDILQEAYAAI 599 (605)
Q Consensus 574 ~------~a~~~~~~gd~~~Ar~il~kAl~~~ 599 (605)
| -|+.+...|.+++|---|-.||+-.
T Consensus 230 mGvIRECGGKMHlreg~fe~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 230 MGVIRECGGKMHLREGEFEKAHTDFFEAFKNY 261 (440)
T ss_pred HhHHHHcCCccccccchHHHHHhHHHHHHhcc
Confidence 2 2334556788888888777777643
No 335
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=82.82 E-value=27 Score=33.16 Aligned_cols=104 Identities=7% Similarity=-0.054 Sum_probs=75.1
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--CCCHHHH--
Q 007407 463 DRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVF--LTKKNIW-- 538 (605)
Q Consensus 463 ~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~--P~~~~~w-- 538 (605)
-+..|...|..+.+.|+.+.|...|.++...........+.++..+...+-.+++..+...+.++-... +.+...-
T Consensus 35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr 114 (177)
T PF10602_consen 35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 456788899999999999999999999877654423467788888888888999999998888886553 2222221
Q ss_pred --HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 007407 539 --LKAAQLEKSYGCRESLIALLRKAVTYCP 566 (605)
Q Consensus 539 --~~la~l~~~~g~~e~A~~~lekAl~~~P 566 (605)
..-|..+...+++..|-+.|-.++..+.
T Consensus 115 lk~~~gL~~l~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 115 LKVYEGLANLAQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence 2224445567888888888877765553
No 336
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.70 E-value=21 Score=34.67 Aligned_cols=58 Identities=7% Similarity=0.067 Sum_probs=31.0
Q ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHH
Q 007407 425 ERAIWIAAAKLEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTC 483 (605)
Q Consensus 425 ~~~iwi~~a~Le~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A 483 (605)
++++.+.+|.++..-+.+++..++.++++...... ..+.++...+|..+.+.|+++.|
T Consensus 140 t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~-~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 140 TAELQYALATYYTKRDPEKTIQLLLRALELSNPDD-NFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHHHhcchhhh
Confidence 45555555555544455666666666665544321 23455555566666666555544
No 337
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=82.59 E-value=5.4 Score=40.35 Aligned_cols=66 Identities=12% Similarity=0.076 Sum_probs=58.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 007407 510 ECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMG 575 (605)
Q Consensus 510 ~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~ 575 (605)
.+...++++.|..+.++.+..+|+++.-|.-.|.+|.+.|-+.-|++.++..+.+||+.+..-+.-
T Consensus 190 ~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir 255 (269)
T COG2912 190 ALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIR 255 (269)
T ss_pred HHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHH
Confidence 356678899999999999999999999999999999999999999999999999999987764433
No 338
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=82.31 E-value=68 Score=33.49 Aligned_cols=192 Identities=13% Similarity=0.052 Sum_probs=102.1
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHhh--cHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHH
Q 007407 377 SEEEARILLHRAVECCPLDVELWLALVRLE--TYGVARSVLNKARKKLPKERAIWIAAA-KLEANGNTSMVGKIIERGIR 453 (605)
Q Consensus 377 ~~e~A~~~l~rAl~~~P~~~~lw~aLa~le--~~e~A~~vL~~al~~~p~~~~iwi~~a-~Le~~g~~~~a~~i~~~al~ 453 (605)
++.+-++.-..|++.+|.+..++..|+.=+ ...+|.+++++|++..... +.-. ++..+|...++. .++
T Consensus 199 np~~RI~~A~~ALeIN~eCA~AyvLLAEEEa~Ti~~AE~l~k~ALka~e~~----yr~sqq~qh~~~~~da~--~rR--- 269 (556)
T KOG3807|consen 199 NPPARIKAAYQALEINNECATAYVLLAEEEATTIVDAERLFKQALKAGETI----YRQSQQCQHQSPQHEAQ--LRR--- 269 (556)
T ss_pred CcHHHHHHHHHHHhcCchhhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHH----HhhHHHHhhhccchhhh--hhc---
Confidence 455556667788999999998888887643 5678889999998764321 1111 122222211111 111
Q ss_pred HhccCcccccHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Q 007407 454 ALQGEEVVIDRDTWM--KEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTV- 530 (605)
Q Consensus 454 ~~p~~~~~~~~~~wl--~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~- 530 (605)
+ .+.-+++ .+|....+.|...+|..+++...+..|- ..-.++.-++.+.+....-|.....++.+--.+
T Consensus 270 ---D----tnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl-~t~lniheNLiEalLE~QAYADvqavLakYDdis 341 (556)
T KOG3807|consen 270 ---D----TNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPL-LTMLNIHENLLEALLELQAYADVQAVLAKYDDIS 341 (556)
T ss_pred ---c----cchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 1 1222232 3566677889899999999888776653 123344445555555554455544444433222
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCC
Q 007407 531 FLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSE 603 (605)
Q Consensus 531 ~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~ 603 (605)
.|.+..+-+..+.+ +++.+-++ ..|+.. .-..++.. --.|.+.+.+|++.||.-|
T Consensus 342 lPkSA~icYTaALL--------K~RAVa~k---Fspd~a-srRGLS~A------E~~AvEAihRAvEFNPHVP 396 (556)
T KOG3807|consen 342 LPKSAAICYTAALL--------KTRAVSEK---FSPETA-SRRGLSTA------EINAVEAIHRAVEFNPHVP 396 (556)
T ss_pred CcchHHHHHHHHHH--------HHHHHHhh---cCchhh-hhccccHH------HHHHHHHHHHHhhcCCCCc
Confidence 25554444433221 12222221 123211 11111111 2357889999999999765
No 339
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=81.93 E-value=65 Score=33.02 Aligned_cols=94 Identities=19% Similarity=0.164 Sum_probs=49.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhc------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCC--HHH
Q 007407 505 VADVEECKKRGSIETARAIFSPACTVF------LTKKNIWLKAAQLEKSYGCRESLIALLRKAVT-----YCPQA--EVL 571 (605)
Q Consensus 505 ~~~a~~~~~~g~~~~A~~i~~~al~~~------P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~-----~~P~~--~~l 571 (605)
..++.++...|+|.+|.+...-.+.-+ |+-..++..-..++....+...+..-+-.|-. .||.. ..+
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~l 208 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQL 208 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHH
Confidence 344556667777777777665554321 33344444445555555555544444443322 25532 223
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007407 572 WLMGAKEKWLAGDVPATRDILQEAYAA 598 (605)
Q Consensus 572 ~l~~a~~~~~~gd~~~Ar~il~kAl~~ 598 (605)
=++-|.......|+.-|..+|-+|++-
T Consensus 209 DL~sGIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 209 DLLSGILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred HHhccceeeccccchhHHHHHHHHHhc
Confidence 333344444566677777777776653
No 340
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=81.39 E-value=31 Score=38.95 Aligned_cols=84 Identities=15% Similarity=0.069 Sum_probs=48.5
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CHHHHHHH
Q 007407 463 DRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLT-KKNIWLKA 541 (605)
Q Consensus 463 ~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~-~~~~w~~l 541 (605)
.++.....|..+.+...+--|.+||.+.=. .-...++.+..++..+|.++-++ .|. ...+++-+
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD-----------~ksiVqlHve~~~W~eAFalAe~----hPe~~~dVy~py 810 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGD-----------LKSLVQLHVETQRWDEAFALAEK----HPEFKDDVYMPY 810 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhcc-----------HHHHhhheeecccchHhHhhhhh----CccccccccchH
Confidence 345555666666666666667677665411 01224455666777777766543 344 24566666
Q ss_pred HHHHHHcCCHHHHHHHHHHH
Q 007407 542 AQLEKSYGCRESLIALLRKA 561 (605)
Q Consensus 542 a~l~~~~g~~e~A~~~lekA 561 (605)
|+.+....++++|.+.|-+|
T Consensus 811 aqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 811 AQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred HHHhhhhhhHHHHHHHHHHh
Confidence 66666666666666666555
No 341
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=80.30 E-value=42 Score=29.81 Aligned_cols=95 Identities=18% Similarity=0.187 Sum_probs=57.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC---CCch----h--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-------CC
Q 007407 470 EAEVADRAGSVVTCVAIITNTIEIG---VDEE----D--KKRTWVADVEECKKRGSIETARAIFSPACTVF-------LT 533 (605)
Q Consensus 470 ~A~~~e~~g~~~~A~~i~~~al~~~---p~~~----~--~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~-------P~ 533 (605)
.++.....|.+++|.+-+++++... |.++ + +.-.+--++..+...|+|+++..--..+|..| .+
T Consensus 15 ~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qd 94 (144)
T PF12968_consen 15 DAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQD 94 (144)
T ss_dssp HHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTST
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccc
Confidence 3455556677888888888888753 2211 1 11122334566778888888877777777654 44
Q ss_pred CHHHHHH----HHHHHHHcCCHHHHHHHHHHHHHh
Q 007407 534 KKNIWLK----AAQLEKSYGCRESLIALLRKAVTY 564 (605)
Q Consensus 534 ~~~~w~~----la~l~~~~g~~e~A~~~lekAl~~ 564 (605)
....|.. .+..+...|..++|.+.|+.+.+.
T Consensus 95 eGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 95 EGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 4566654 355556678888888888877653
No 342
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=79.87 E-value=2.2 Score=26.62 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHH
Q 007407 571 LWLMGAKEKWLAGDVPATRDILQ 593 (605)
Q Consensus 571 l~l~~a~~~~~~gd~~~Ar~il~ 593 (605)
+.+.+|..++..|++++|+.+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45566667777777777776664
No 343
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=78.93 E-value=56 Score=31.75 Aligned_cols=151 Identities=9% Similarity=0.032 Sum_probs=85.5
Q ss_pred HHhCCCcHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhcHHHHHHHHHHHHHhCC--CCHHHHHHHHHHH
Q 007407 359 LDEIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALVRLETYGVARSVLNKARKKLP--KERAIWIAAAKLE 436 (605)
Q Consensus 359 le~~P~~~~lw~~l~~le~~e~A~~~l~rAl~~~P~~~~lw~aLa~le~~e~A~~vL~~al~~~p--~~~~iwi~~a~Le 436 (605)
+...|.+...+..+..++++...+.+ |-.+-|....-... -|+.-+-.+.+-+.+..+... .+|.+ .+=..-
T Consensus 45 ~~~~pt~~~ky~~l~~le~Y~kCiel---Aa~Iq~i~~~e~k~-~R~~a~~~s~~~l~~L~~~tk~S~dP~l--lYy~Ws 118 (203)
T PF11207_consen 45 LKKNPTDKNKYQLLEALEKYSKCIEL---AAQIQHIKQKERKT-DRFRALLHSYQELERLQEETKNSQDPYL--LYYHWS 118 (203)
T ss_pred HhcCCchHHHHHHHHHHHHHHHHHHH---HhcCeeechHhHHH-HHHHHHHHHHHHHHHHHHHHccCCCccH--HHHHhh
Confidence 44578878777777777665444433 22222322111000 111111112222333333222 23332 211122
Q ss_pred HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-hhhHHHHHHHHHHHHHcC
Q 007407 437 ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDE-EDKKRTWVADVEECKKRG 515 (605)
Q Consensus 437 ~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~-~~~~~~~~~~a~~~~~~g 515 (605)
+.|+ ..|...|-++- ..+...+.++-..+|.++.+. +.+.+..++.++++....+ .-++.+...+|..+...|
T Consensus 119 r~~d-~~A~~~fL~~E----~~~~l~t~elq~aLAtyY~kr-D~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~ 192 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLE----GTPELETAELQYALATYYTKR-DPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLK 192 (203)
T ss_pred ccCc-HHHHHHHHHHc----CCCCCCCHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 3444 44554444432 233345788888899888855 5899999999999986544 458899999999999999
Q ss_pred CHHHHH
Q 007407 516 SIETAR 521 (605)
Q Consensus 516 ~~~~A~ 521 (605)
+++.|.
T Consensus 193 ~~e~AY 198 (203)
T PF11207_consen 193 NYEQAY 198 (203)
T ss_pred chhhhh
Confidence 999885
No 344
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=78.09 E-value=12 Score=31.48 Aligned_cols=56 Identities=16% Similarity=0.188 Sum_probs=40.8
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 007407 511 CKKRGSIETARAIFSPACTVFLT---------KKNIWLKAAQLEKSYGCRESLIALLRKAVTYCP 566 (605)
Q Consensus 511 ~~~~g~~~~A~~i~~~al~~~P~---------~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P 566 (605)
.++.+++.+|...+.+.+..... ...++..+|.+....|++++|...+++|+.+.-
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 45677777776666665554321 135567788889999999999999999998853
No 345
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=77.79 E-value=10 Score=45.25 Aligned_cols=95 Identities=13% Similarity=-0.026 Sum_probs=70.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHH----cCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007407 510 ECKKRGSIETARAIFSPACTVFLTKK---NIWLKAAQLEKS----YGC---RESLIALLRKAVTYCPQAEVLWLMGAKEK 579 (605)
Q Consensus 510 ~~~~~g~~~~A~~i~~~al~~~P~~~---~~w~~la~l~~~----~g~---~e~A~~~lekAl~~~P~~~~l~l~~a~~~ 579 (605)
.+.....|+.|...|+++...||+.. .+.+..|..... .|+ +++|+.-|++.- ..|..|--|+.-|-+|
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 562 (932)
T PRK13184 484 AFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKALVY 562 (932)
T ss_pred HHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHHHH
Confidence 45556778999999999999999854 555666544432 233 445555555432 2356677788888889
Q ss_pred HHcCChHHHHHHHHHHHHHCCCCCCC
Q 007407 580 WLAGDVPATRDILQEAYAAIPNSEEI 605 (605)
Q Consensus 580 ~~~gd~~~Ar~il~kAl~~~P~~~~I 605 (605)
...|++++=.+.|.-|++..|+.|+|
T Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 563 QRLGEYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred HHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence 88999999999999999999999886
No 346
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=77.18 E-value=39 Score=36.71 Aligned_cols=137 Identities=11% Similarity=-0.022 Sum_probs=0.0
Q ss_pred HHHcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHc
Q 007407 435 LEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKR 514 (605)
Q Consensus 435 Le~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~ 514 (605)
|..+++..++.++|.+..+...++......++.......+--..+.+.-..++-..-...|. ...+.+-.+-...+.
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~---s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGK---SAYLPLFKALVAYKQ 92 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCC---chHHHHHHHHHHHHh
Q ss_pred CCHHHHHHHHHHHHHhcCCCHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 007407 515 GSIETARAIFSPACTVFLTKKNIWLK---------------AAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLM 574 (605)
Q Consensus 515 g~~~~A~~i~~~al~~~P~~~~~w~~---------------la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~ 574 (605)
+.+..|...+...-..--...+.|.. .|..+...|.+.+++.++.+.+...=..+-.|.+
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~ 167 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNS 167 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccH
No 347
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.80 E-value=91 Score=31.72 Aligned_cols=108 Identities=16% Similarity=0.139 Sum_probs=66.9
Q ss_pred CCHHHHHH----HHHHH-HcCCHHHHHHHHHHHHHHhccCccc-------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007407 424 KERAIWIA----AAKLE-ANGNTSMVGKIIERGIRALQGEEVV-------IDRDTWMKEAEVADRAGSVVTCVAIITNTI 491 (605)
Q Consensus 424 ~~~~iwi~----~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~-------~~~~~wl~~A~~~e~~g~~~~A~~i~~~al 491 (605)
.+..+|+. +++|. ..|.+.+..+++.+.-+++...... .-.+++....+.+..+.+...-.++|++++
T Consensus 139 KNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 139 KNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred hcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHH
Confidence 34567764 56666 6677888888888887777664221 123555556666666777777788888888
Q ss_pred HhCCCc--hhhHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhc
Q 007407 492 EIGVDE--EDKKRTWVA-DVEECKKRGSIETARAIFSPACTVF 531 (605)
Q Consensus 492 ~~~p~~--~~~~~~~~~-~a~~~~~~g~~~~A~~i~~~al~~~ 531 (605)
.+...- |.-..+.-. -+....+.|.+++|..-|=+|.+.+
T Consensus 219 hiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 219 HIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNY 261 (440)
T ss_pred HhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcc
Confidence 764221 111111111 1345567788888888888887764
No 348
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=75.84 E-value=7 Score=26.55 Aligned_cols=29 Identities=17% Similarity=0.061 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007407 570 VLWLMGAKEKWLAGDVPATRDILQEAYAA 598 (605)
Q Consensus 570 ~l~l~~a~~~~~~gd~~~Ar~il~kAl~~ 598 (605)
..+..+|..+...|++++|+.++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 35677899999999999999999999976
No 349
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=75.49 E-value=4.8 Score=28.91 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=20.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH
Q 007407 573 LMGAKEKWLAGDVPATRDILQEAYA 597 (605)
Q Consensus 573 l~~a~~~~~~gd~~~Ar~il~kAl~ 597 (605)
+.+|+.|...||.+.||.+|+..+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5678888888889999988888884
No 350
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=75.48 E-value=26 Score=31.78 Aligned_cols=72 Identities=6% Similarity=-0.043 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH-hcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 007407 500 KKRTWVADVEECKKRG---SIETARAIFSPACT-VFLT-KKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVL 571 (605)
Q Consensus 500 ~~~~~~~~a~~~~~~g---~~~~A~~i~~~al~-~~P~-~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l 571 (605)
.....+.+|-.+++.. +..+-+.+++..++ -.|. .-...+.++.-+.+.|+|+.++.+.+..++..|++..+
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 3455566666566544 34456677777775 4454 45666677777777888888888888888888877655
No 351
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=75.03 E-value=10 Score=25.92 Aligned_cols=20 Identities=15% Similarity=-0.069 Sum_probs=8.7
Q ss_pred HHHHHHHHHHcCCHHHHHHH
Q 007407 538 WLKAAQLEKSYGCRESLIAL 557 (605)
Q Consensus 538 w~~la~l~~~~g~~e~A~~~ 557 (605)
|+.+|..+...|++++|+.+
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 44444444444444444444
No 352
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=74.19 E-value=8.7 Score=42.18 Aligned_cols=85 Identities=11% Similarity=-0.037 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007407 481 VTCVAIITNTIEIGVDEEDKKRTWVADVEECKKR---GSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIAL 557 (605)
Q Consensus 481 ~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~---g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~ 557 (605)
..+...|.+++...|. ....+..+|.++.+. |+.-.|..-+..|++++|....+|+.++.++...+.+.+|+..
T Consensus 391 ~~~i~~~s~a~q~~~~---~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~ 467 (758)
T KOG1310|consen 391 SGAISHYSRAIQYVPD---AIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSC 467 (758)
T ss_pred HHHHHHHHHHhhhccc---hhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhh
Confidence 3455566666666665 677777777777664 4566777778888888888888999999998888888888888
Q ss_pred HHHHHHhCCCC
Q 007407 558 LRKAVTYCPQA 568 (605)
Q Consensus 558 lekAl~~~P~~ 568 (605)
...+...+|.+
T Consensus 468 ~~alq~~~Ptd 478 (758)
T KOG1310|consen 468 HWALQMSFPTD 478 (758)
T ss_pred HHHHhhcCchh
Confidence 87776667743
No 353
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=73.47 E-value=22 Score=39.03 Aligned_cols=115 Identities=17% Similarity=0.074 Sum_probs=64.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHH----------------HHHHHh--cCC
Q 007407 472 EVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIF----------------SPACTV--FLT 533 (605)
Q Consensus 472 ~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~----------------~~al~~--~P~ 533 (605)
..+...++++++..+++.. .+-|. . ........+.++.+.|..+.|..+. +.|++. ..+
T Consensus 269 k~av~~~d~~~v~~~i~~~-~ll~~-i-~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~ 345 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAAS-NLLPN-I-PKDQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELD 345 (443)
T ss_dssp HHHHHTT-HHH-----HHH-HTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCS
T ss_pred HHHHHcCChhhhhhhhhhh-hhccc-C-ChhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcC
Confidence 4455677888888877522 11121 0 2334556678899999999988752 233333 245
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 007407 534 KKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYA 597 (605)
Q Consensus 534 ~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~ 597 (605)
++..|..+|.....+|+++-|.+.|+++ .+...+.+ ++...|+.++-.++...|..
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~----~d~~~L~l----Ly~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKA----KDFSGLLL----LYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHC----T-HHHHHH----HHHHCT-HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhh----cCccccHH----HHHHhCCHHHHHHHHHHHHH
Confidence 6778888888888888887777777753 33233322 33457777766666665553
No 354
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.34 E-value=64 Score=36.58 Aligned_cols=93 Identities=8% Similarity=-0.022 Sum_probs=66.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007407 506 ADVEECKKRGSIETARAIFSPACTVFLTK------KNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEK 579 (605)
Q Consensus 506 ~~a~~~~~~g~~~~A~~i~~~al~~~P~~------~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~ 579 (605)
.-|.-..+..+|..+...|...+...|.+ ..+...++-.|....+.+.|.++++.|-+.+|.++-.-+...+..
T Consensus 359 n~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~ 438 (872)
T KOG4814|consen 359 NTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSF 438 (872)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 34445566677888888888888887764 244556667777778888999999999888888766544444545
Q ss_pred HHcCChHHHHHHHHHHHHH
Q 007407 580 WLAGDVPATRDILQEAYAA 598 (605)
Q Consensus 580 ~~~gd~~~Ar~il~kAl~~ 598 (605)
...|+-++|..++.+....
T Consensus 439 ~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 439 LAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHhcchHHHHHHHHHHHhh
Confidence 5567778888777766544
No 355
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=72.08 E-value=15 Score=30.76 Aligned_cols=55 Identities=18% Similarity=0.097 Sum_probs=42.9
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCC
Q 007407 546 KSYGCRESLIALLRKAVTYCPQA---------EVLWLMGAKEKWLAGDVPATRDILQEAYAAIP 600 (605)
Q Consensus 546 ~~~g~~e~A~~~lekAl~~~P~~---------~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P 600 (605)
...|++..|.+.+.+.+..+... ...++.+|.+....|++++|...+++|+.+..
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 46789999988888887765321 24567778888889999999999999998753
No 356
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=71.93 E-value=1.4e+02 Score=31.49 Aligned_cols=88 Identities=11% Similarity=-0.033 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007407 479 SVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTV--FLTKKNIWLKAAQLEKSYGCRESLIA 556 (605)
Q Consensus 479 ~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~--~P~~~~~w~~la~l~~~~g~~e~A~~ 556 (605)
+......+|.......|+ +-+-++.+-......-.+.+..+.+-.... .-++..+|-..+.++.+.|..++|..
T Consensus 311 DW~~I~aLYdaL~~~apS----PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~ 386 (415)
T COG4941 311 DWPAIDALYDALEQAAPS----PVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARA 386 (415)
T ss_pred ChHHHHHHHHHHHHhCCC----CeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHH
Confidence 345556667666666665 112233333333333455666666655544 34456667777888888888888888
Q ss_pred HHHHHHHhCCCCHH
Q 007407 557 LLRKAVTYCPQAEV 570 (605)
Q Consensus 557 ~lekAl~~~P~~~~ 570 (605)
-|++|+...++...
T Consensus 387 aydrAi~La~~~ae 400 (415)
T COG4941 387 AYDRAIALARNAAE 400 (415)
T ss_pred HHHHHHHhcCChHH
Confidence 88888887765543
No 357
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=71.74 E-value=1.2e+02 Score=32.68 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHH
Q 007407 378 EEEARILLHRAVECCPLDVELWL 400 (605)
Q Consensus 378 ~e~A~~~l~rAl~~~P~~~~lw~ 400 (605)
.+++..+=...++.+|+...+|.
T Consensus 45 d~e~l~lt~~ll~~npe~~t~wN 67 (421)
T KOG0529|consen 45 DEEHLELTSELLEKNPEFYTVWN 67 (421)
T ss_pred chHHHHHHHHHHhhCchhhhhhh
Confidence 36777777788888888887775
No 358
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=71.62 E-value=43 Score=30.45 Aligned_cols=75 Identities=5% Similarity=-0.018 Sum_probs=51.0
Q ss_pred cHHHHHHHHHHHHHcCC---HHHHHHHHHHHHH-hCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH
Q 007407 463 DRDTWMKEAEVADRAGS---VVTCVAIITNTIE-IGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIW 538 (605)
Q Consensus 463 ~~~~wl~~A~~~e~~g~---~~~A~~i~~~al~-~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w 538 (605)
+.+.-+.+|-.+..+.+ ..+-..+++.++. ..|+ .+....+.+|-.+.+.++|+.++.++...++..|++..+.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~--~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPE--RRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcc--cchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 56666777777766654 3455678888886 3443 2334444456667788888999998888888888886654
Q ss_pred H
Q 007407 539 L 539 (605)
Q Consensus 539 ~ 539 (605)
.
T Consensus 109 ~ 109 (149)
T KOG3364|consen 109 E 109 (149)
T ss_pred H
Confidence 3
No 359
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=71.14 E-value=14 Score=37.52 Aligned_cols=63 Identities=10% Similarity=0.009 Sum_probs=57.3
Q ss_pred hhhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHH
Q 007407 261 NSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWL 323 (605)
Q Consensus 261 ~~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwl 323 (605)
..+.+....|....++.+..+|.++.-|...+-++.+.|.+..|++-++..++.||+....-.
T Consensus 191 ~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ 253 (269)
T COG2912 191 LLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEM 253 (269)
T ss_pred HHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHH
Confidence 567888999999999999999999999999999999999999999999999999999876633
No 360
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=70.49 E-value=1.2e+02 Score=30.39 Aligned_cols=48 Identities=13% Similarity=0.103 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHH-cCChHHHHHHHHHHHHH
Q 007407 551 RESLIALLRKAVTY-----CPQAEV---LWLMGAKEKWL-AGDVPATRDILQEAYAA 598 (605)
Q Consensus 551 ~e~A~~~lekAl~~-----~P~~~~---l~l~~a~~~~~-~gd~~~Ar~il~kAl~~ 598 (605)
.+.|.+.|+.|+.. .|.+|. +.+.++.+++. .+++++|..+-.+||.-
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~ 200 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 200 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45788888888764 366654 56778888876 89999999888877753
No 361
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=70.33 E-value=15 Score=25.03 Aligned_cols=33 Identities=9% Similarity=-0.150 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHH--HHHHHHHCCCC
Q 007407 570 VLWLMGAKEKWLAGDVPATRDI--LQEAYAAIPNS 602 (605)
Q Consensus 570 ~l~l~~a~~~~~~gd~~~Ar~i--l~kAl~~~P~~ 602 (605)
+.|..+|-....+|++++|+.+ |.-+..++|.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 4678888888999999999999 54888888765
No 362
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=70.18 E-value=30 Score=34.31 Aligned_cols=92 Identities=16% Similarity=0.026 Sum_probs=47.8
Q ss_pred HHHcCCHHHHHHHHHHHHHhc---CCCH---------HHHHHHHHHHHHcCCH--HHHHHHHHHHHHhC--CCC--HHHH
Q 007407 511 CKKRGSIETARAIFSPACTVF---LTKK---------NIWLKAAQLEKSYGCR--ESLIALLRKAVTYC--PQA--EVLW 572 (605)
Q Consensus 511 ~~~~g~~~~A~~i~~~al~~~---P~~~---------~~w~~la~l~~~~g~~--e~A~~~lekAl~~~--P~~--~~l~ 572 (605)
++..|+++.|..+..+|++.. |+.. +-...++.-....|.. -.....+...+... |+. ..++
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~ 172 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLY 172 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHH
Confidence 344566666666666666653 3321 1122233333344432 11233333333221 333 3455
Q ss_pred HHHHHHHH---------HcCChHHHHHHHHHHHHHCCCC
Q 007407 573 LMGAKEKW---------LAGDVPATRDILQEAYAAIPNS 602 (605)
Q Consensus 573 l~~a~~~~---------~~gd~~~Ar~il~kAl~~~P~~ 602 (605)
-..|..+. ..++...|...|++|+++||+.
T Consensus 173 K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 173 KAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 55566553 3456778999999999999863
No 363
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.52 E-value=2e+02 Score=32.53 Aligned_cols=80 Identities=14% Similarity=-0.033 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CCH
Q 007407 479 SVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRG---SIETARAIFSPACTVFLTKKNIWLKAAQLEKSY----GCR 551 (605)
Q Consensus 479 ~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g---~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~----g~~ 551 (605)
+...|..+|..+-..+. +...+.++.++.... ++..|..+|..|... .+..+.+.++.++..- -+.
T Consensus 308 d~~~A~~~~~~aA~~g~-----~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELGN-----PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNL 380 (552)
T ss_pred cHHHHHHHHHHHHhcCC-----chHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCH
Confidence 34556666666666542 223333444443322 455677777766654 4555555555555432 245
Q ss_pred HHHHHHHHHHHHhC
Q 007407 552 ESLIALLRKAVTYC 565 (605)
Q Consensus 552 e~A~~~lekAl~~~ 565 (605)
..|..+|++|.+..
T Consensus 381 ~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKG 394 (552)
T ss_pred HHHHHHHHHHHHcc
Confidence 66777777777665
No 364
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=67.66 E-value=31 Score=28.14 Aligned_cols=46 Identities=11% Similarity=0.096 Sum_probs=31.4
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc---CCHHHHHH
Q 007407 511 CKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSY---GCRESLIA 556 (605)
Q Consensus 511 ~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~---g~~e~A~~ 556 (605)
+...++...|+.++.++|+..++...-|..+|.+...+ |++.++++
T Consensus 16 LY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 16 LYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred HhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33566778888888888888888777777776655544 55544433
No 365
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=67.53 E-value=1.6e+02 Score=33.24 Aligned_cols=123 Identities=11% Similarity=-0.032 Sum_probs=63.1
Q ss_pred HHHHHHHhCCCCHHHHHHH--HHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHH-
Q 007407 414 VLNKARKKLPKERAIWIAA--AKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITN- 489 (605)
Q Consensus 414 vL~~al~~~p~~~~iwi~~--a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~- 489 (605)
.+.......|.++++.+.. .-+. ..+....+...+..++...+. .......++..++..|....+...+.+
T Consensus 53 a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~L~~ale~~~~~~~~~~~~~~~ 127 (620)
T COG3914 53 ALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPE-----NCPAVQNLAAALELDGLQFLALADISEI 127 (620)
T ss_pred HHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcc-----cchHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3444444556666665544 2233 445554455555555555443 233455555555555544444433333
Q ss_pred HHHhCCCchhhHHH------HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 007407 490 TIEIGVDEEDKKRT------WVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQL 544 (605)
Q Consensus 490 al~~~p~~~~~~~~------~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l 544 (605)
+....|. +..+ +++.+......++..++.....++....|.++.+...+...
T Consensus 128 a~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 128 AEWLSPD---NAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHhcCcc---hHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 4444444 3322 22235555556666667777777777777666555555444
No 366
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=66.52 E-value=12 Score=39.24 Aligned_cols=46 Identities=30% Similarity=0.367 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhCCC---CHHHHHHHHHHH-HcCCHHHHHHHHHHHHHH
Q 007407 409 GVARSVLNKARKKLPK---ERAIWIAAAKLE-ANGNTSMVGKIIERGIRA 454 (605)
Q Consensus 409 e~A~~vL~~al~~~p~---~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~ 454 (605)
+++..+|+..++.+|. ....||.+|+|+ ..|.++.++.+|++|+..
T Consensus 120 eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~a 169 (353)
T PF15297_consen 120 EEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILA 169 (353)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Confidence 4455555555555554 234466666666 666666666666666654
No 367
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=65.37 E-value=23 Score=39.08 Aligned_cols=87 Identities=8% Similarity=-0.077 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCH
Q 007407 441 TSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAG---SVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSI 517 (605)
Q Consensus 441 ~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g---~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~ 517 (605)
...++..|.++++..|. ....+...|..+.+.+ ..-.|..-...++.++|. ...+|+.+++.+...+++
T Consensus 390 ~~~~i~~~s~a~q~~~~-----~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s---~~kah~~la~aL~el~r~ 461 (758)
T KOG1310|consen 390 VSGAISHYSRAIQYVPD-----AIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPS---IQKAHFRLARALNELTRY 461 (758)
T ss_pred HHHHHHHHHHHhhhccc-----hhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChH---HHHHHHHHHHHHHHHhhH
Confidence 44455556666655432 4455555666665544 222333333445556665 677777777778888888
Q ss_pred HHHHHHHHHHHHhcCCCH
Q 007407 518 ETARAIFSPACTVFLTKK 535 (605)
Q Consensus 518 ~~A~~i~~~al~~~P~~~ 535 (605)
.+|.....-+...+|.+.
T Consensus 462 ~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 462 LEALSCHWALQMSFPTDV 479 (758)
T ss_pred HHhhhhHHHHhhcCchhh
Confidence 888887777777778654
No 368
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=65.35 E-value=1.2e+02 Score=32.52 Aligned_cols=22 Identities=9% Similarity=-0.105 Sum_probs=12.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh
Q 007407 509 EECKKRGSIETARAIFSPACTV 530 (605)
Q Consensus 509 ~~~~~~g~~~~A~~i~~~al~~ 530 (605)
..++..-++.+|...++..+..
T Consensus 177 y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 177 YDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHccCHHHHHHHHHHHHHH
Confidence 3445555666666666655543
No 369
>PTZ00046 rifin; Provisional
Probab=64.79 E-value=9.9 Score=39.99 Aligned_cols=50 Identities=22% Similarity=0.269 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCC--ChhhhhHHhhhc
Q 007407 99 KEADAVWESIDKLMDSRRKSRREARLEEEIKNYRYKNP--TIREEFADLKGK 148 (605)
Q Consensus 99 ~ead~i~~~id~~~~~r~~~~~~~~~~~~~~~~~~~~~--~~~~qf~dlkr~ 148 (605)
+..-.=|++-|+||.++|++.+|+..++-.+..-+++- ...+||+-|--+
T Consensus 66 rqTsQRF~EYdERM~~kRqkcKeqCDKeIQKIILKDKlEKeL~ekf~tL~Td 117 (358)
T PTZ00046 66 RQTSQRFEEYDERMKEKRQKCKEQCDKEIQKIILKDKLEKELMEKFATLQTD 117 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhhhhcccC
Confidence 44445588999999999999998876652222222100 156777777543
No 370
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=64.47 E-value=1.1e+02 Score=27.77 Aligned_cols=55 Identities=13% Similarity=0.097 Sum_probs=36.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 007407 543 QLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYA 597 (605)
Q Consensus 543 ~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~ 597 (605)
......|+.+...+++........-+|.+.+.+|..|-+.|+..+|-.++.+|-+
T Consensus 94 d~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 94 DILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 4555677778888888877754444577888888888888888888888888765
No 371
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=63.78 E-value=22 Score=36.36 Aligned_cols=58 Identities=19% Similarity=-0.013 Sum_probs=49.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 007407 538 WLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEA 595 (605)
Q Consensus 538 w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kA 595 (605)
+...+..|...|.+.+|..+.+++++.+|-++..|..+-..+...||--.|.+.|++-
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3445677888999999999999999999999999999999999999977777776654
No 372
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=62.19 E-value=57 Score=35.70 Aligned_cols=54 Identities=7% Similarity=-0.013 Sum_probs=24.3
Q ss_pred HcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 007407 513 KRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCP 566 (605)
Q Consensus 513 ~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P 566 (605)
..|+.++|...-+-.|...-..+.+..-.+-...+.|-++++...+++.+.++|
T Consensus 369 ~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 369 GLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred chhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 344444444444444433333444444333334444445555555555555544
No 373
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=62.18 E-value=1.7e+02 Score=29.09 Aligned_cols=48 Identities=17% Similarity=0.153 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHH-cCChHHHHHHHHHHHHH
Q 007407 551 RESLIALLRKAVTY-----CPQAEV---LWLMGAKEKWL-AGDVPATRDILQEAYAA 598 (605)
Q Consensus 551 ~e~A~~~lekAl~~-----~P~~~~---l~l~~a~~~~~-~gd~~~Ar~il~kAl~~ 598 (605)
.+.|...|++|+.. .|.+|. +.+.|+.+++. .|+.++|.++-.+|+..
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 35678888888764 466654 56778888877 99999999999888863
No 374
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=61.77 E-value=10 Score=23.49 Aligned_cols=23 Identities=26% Similarity=0.159 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 007407 537 IWLKAAQLEKSYGCRESLIALLR 559 (605)
Q Consensus 537 ~w~~la~l~~~~g~~e~A~~~le 559 (605)
+...+|.++...|++++|+.+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34455566666666666665554
No 375
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=61.59 E-value=73 Score=28.38 Aligned_cols=39 Identities=5% Similarity=0.107 Sum_probs=23.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHc
Q 007407 473 VADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKR 514 (605)
Q Consensus 473 ~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~ 514 (605)
.++..+.+......++.++..++. +..+...++.++...
T Consensus 16 ~~~~~~~~~~l~~yLe~~~~~~~~---~~~~~~~li~ly~~~ 54 (140)
T smart00299 16 LFEKRNLLEELIPYLESALKLNSE---NPALQTKLIELYAKY 54 (140)
T ss_pred HHHhCCcHHHHHHHHHHHHccCcc---chhHHHHHHHHHHHH
Confidence 344456677777777777776554 444555555555543
No 376
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=59.37 E-value=56 Score=29.65 Aligned_cols=56 Identities=18% Similarity=0.147 Sum_probs=41.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007407 509 EECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTY 564 (605)
Q Consensus 509 ~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~ 564 (605)
..+..+|+-+.--.++....+....+++++..+|..|.+.|+..++-+++.+|.+.
T Consensus 94 d~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 94 DILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 45667888888888888887766678899999999999999999999999999865
No 377
>PF12854 PPR_1: PPR repeat
Probab=58.66 E-value=21 Score=23.79 Aligned_cols=24 Identities=8% Similarity=-0.051 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 007407 536 NIWLKAAQLEKSYGCRESLIALLR 559 (605)
Q Consensus 536 ~~w~~la~l~~~~g~~e~A~~~le 559 (605)
..|..+...+.+.|+.++|.++|+
T Consensus 8 ~ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 8 VTYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHH
Confidence 344455555555555555555554
No 378
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=58.55 E-value=94 Score=31.46 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHH
Q 007407 569 EVLWLMGAKEKWLAGDVPATRDIL 592 (605)
Q Consensus 569 ~~l~l~~a~~~~~~gd~~~Ar~il 592 (605)
+.++.++|..+|+.|++..|+..|
T Consensus 90 p~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 90 PELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHH
Confidence 555555555555555555555444
No 379
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=58.53 E-value=13 Score=39.04 Aligned_cols=50 Identities=20% Similarity=0.273 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCC--ChhhhhHHhhhc
Q 007407 99 KEADAVWESIDKLMDSRRKSRREARLEEEIKNYRYKNP--TIREEFADLKGK 148 (605)
Q Consensus 99 ~ead~i~~~id~~~~~r~~~~~~~~~~~~~~~~~~~~~--~~~~qf~dlkr~ 148 (605)
+..-.=|++-|+||.++|++.+|+..++-.+..-+++- ...+||+-|--+
T Consensus 69 rqTsQRF~EYdERM~~kRqKcKeqCDKeIQKIILKDKiEKeL~ekf~tL~Td 120 (353)
T TIGR01477 69 RQTSQRFEEYDERMQEKRQKCKEQCDKEIQKIILKDKLEKELTEKFSTLQTD 120 (353)
T ss_pred HHHHHHHHhHHHHHHHhhhhhHHhhchHHHHHHHHHHHHHHHHHhhhhcccC
Confidence 44455588999999999999998876652222222100 146777776543
No 380
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=58.17 E-value=59 Score=32.07 Aligned_cols=121 Identities=13% Similarity=0.089 Sum_probs=76.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHH
Q 007407 471 AEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKK---NIWLKAAQLEKS 547 (605)
Q Consensus 471 A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~---~~w~~la~l~~~ 547 (605)
++.+.+.++..++....+.-++..|. +......+.+++.-.|++++|..-++-+.+..|++. ++|..+...+.-
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPt---da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ea~ 84 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPT---DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCEAA 84 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCc---cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHH
Confidence 45677788999999999999999988 455555556778889999999999999999999863 334443333321
Q ss_pred cCCHHHHHHHHHHHHHhCC---C-CHHHHHHH--HHHHHH-cCChHHHHHHHHHHHHHCCCC
Q 007407 548 YGCRESLIALLRKAVTYCP---Q-AEVLWLMG--AKEKWL-AGDVPATRDILQEAYAAIPNS 602 (605)
Q Consensus 548 ~g~~e~A~~~lekAl~~~P---~-~~~l~l~~--a~~~~~-~gd~~~Ar~il~kAl~~~P~~ 602 (605)
. .++|+- ...| . ....|... +.+... .|.-+.+.+.=+.|++..|..
T Consensus 85 R------~evfag--~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~ 138 (273)
T COG4455 85 R------NEVFAG--GAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVP 138 (273)
T ss_pred H------HHHhcc--CCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCC
Confidence 1 112221 1123 1 23344332 223333 445555666667888888764
No 381
>PF13041 PPR_2: PPR repeat family
Probab=56.16 E-value=48 Score=23.79 Aligned_cols=29 Identities=10% Similarity=-0.043 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007407 536 NIWLKAAQLEKSYGCRESLIALLRKAVTY 564 (605)
Q Consensus 536 ~~w~~la~l~~~~g~~e~A~~~lekAl~~ 564 (605)
..|..+...+.+.|++++|.++|++..+.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 45566666666666666666666666655
No 382
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.14 E-value=1.9e+02 Score=27.65 Aligned_cols=93 Identities=14% Similarity=0.075 Sum_probs=41.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHH
Q 007407 504 WVADVEECKKRGSIETARAIFSPACTVFLTK----KNIWLKAAQLEKSYGCRESLIALLRKAVT-YCPQAEVLWLMGAKE 578 (605)
Q Consensus 504 ~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~----~~~w~~la~l~~~~g~~e~A~~~lekAl~-~~P~~~~l~l~~a~~ 578 (605)
.+..+.+....|+...|...|..+-...|-- -.+-+..+.++..+|.|+......+..-. .+|-....--.++-.
T Consensus 97 ~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglA 176 (221)
T COG4649 97 RMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLA 176 (221)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHH
Confidence 3444444555555555555555554433221 12333445555555665554444432110 111112222333444
Q ss_pred HHHcCChHHHHHHHHHHH
Q 007407 579 KWLAGDVPATRDILQEAY 596 (605)
Q Consensus 579 ~~~~gd~~~Ar~il~kAl 596 (605)
.|+.|++.+|++.|....
T Consensus 177 a~kagd~a~A~~~F~qia 194 (221)
T COG4649 177 AYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHhccchHHHHHHHHHHH
Confidence 555666666666555544
No 383
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=54.94 E-value=39 Score=32.27 Aligned_cols=49 Identities=16% Similarity=0.047 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 007407 517 IETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCP 566 (605)
Q Consensus 517 ~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P 566 (605)
.+..+...++.+...| ++.++..++.++...|+.++|..+.+++....|
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3444555566666666 456777777777778888888888888877777
No 384
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=54.65 E-value=3.2e+02 Score=29.77 Aligned_cols=21 Identities=0% Similarity=-0.013 Sum_probs=12.7
Q ss_pred HcCCHHHHHHHHHHHHHHhcc
Q 007407 437 ANGNTSMVGKIIERGIRALQG 457 (605)
Q Consensus 437 ~~g~~~~a~~i~~~al~~~p~ 457 (605)
+++++..|..-|..+++.+.+
T Consensus 188 rqk~ya~Aa~rF~taLelcsk 208 (569)
T PF15015_consen 188 RQKKYAVAAGRFRTALELCSK 208 (569)
T ss_pred hhHHHHHHHHHHHHHHHHHhh
Confidence 555666666666666666543
No 385
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=54.24 E-value=3.6e+02 Score=30.25 Aligned_cols=38 Identities=24% Similarity=0.232 Sum_probs=22.1
Q ss_pred CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHH
Q 007407 534 KKNIWLKAAQLEKSYGC-RESLIALLRKAVTYCPQAEVL 571 (605)
Q Consensus 534 ~~~~w~~la~l~~~~g~-~e~A~~~lekAl~~~P~~~~l 571 (605)
....|+.++.++...++ .+....-.++-...+|+||..
T Consensus 201 ~L~GWL~L~rv~~~~~~~p~qlk~~i~~Wq~~yPqhPaA 239 (604)
T COG3107 201 ALQGWLDLARVYKDNGSDPPQLKAGIEDWQKRYPQHPAA 239 (604)
T ss_pred ccchHHHHHHHHHhcccCHHHHHHHHHHHHhcCCCCchh
Confidence 45567777777766653 334445555555556666655
No 386
>PF12854 PPR_1: PPR repeat
Probab=53.25 E-value=34 Score=22.75 Aligned_cols=27 Identities=19% Similarity=0.132 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHH
Q 007407 568 AEVLWLMGAKEKWLAGDVPATRDILQE 594 (605)
Q Consensus 568 ~~~l~l~~a~~~~~~gd~~~Ar~il~k 594 (605)
+...|-.+...+.+.|++++|+++|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 466778888889999999999999975
No 387
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=53.09 E-value=3.7e+02 Score=30.07 Aligned_cols=75 Identities=8% Similarity=-0.002 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007407 411 ARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITN 489 (605)
Q Consensus 411 A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~ 489 (605)
...++++.+.. ..+...++.+++++ ++| .++...+-++.++..-. +...-..+|..+++ ++..++...|.+
T Consensus 85 veh~c~~~l~~-~e~kmal~el~q~y~en~-n~~l~~lWer~ve~dfn-----Dvv~~ReLa~~yEk-ik~sk~a~~f~K 156 (711)
T COG1747 85 VEHLCTRVLEY-GESKMALLELLQCYKENG-NEQLYSLWERLVEYDFN-----DVVIGRELADKYEK-IKKSKAAEFFGK 156 (711)
T ss_pred HHHHHHHHHHh-cchHHHHHHHHHHHHhcC-chhhHHHHHHHHHhcch-----hHHHHHHHHHHHHH-hchhhHHHHHHH
Confidence 44566666554 33344456666655 443 34444555555554432 22233345555555 455666666666
Q ss_pred HHHh
Q 007407 490 TIEI 493 (605)
Q Consensus 490 al~~ 493 (605)
++-.
T Consensus 157 a~yr 160 (711)
T COG1747 157 ALYR 160 (711)
T ss_pred HHHH
Confidence 6554
No 388
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=52.83 E-value=3e+02 Score=29.04 Aligned_cols=176 Identities=18% Similarity=0.114 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHhCCHHHHHHHHHHHHHhC------CCCHHHHH----HHHHhhcHHHHHHHHHHH
Q 007407 349 ANKIRALRMALDEIPDSVRLWKALVEISSEEEARILLHRAVECC------PLDVELWL----ALVRLETYGVARSVLNKA 418 (605)
Q Consensus 349 ~~a~~vl~kAle~~P~~~~lw~~l~~le~~e~A~~~l~rAl~~~------P~~~~lw~----aLa~le~~e~A~~vL~~a 418 (605)
.+++..||..|+ .++-..+.+..++.+|..+....+... +.-+++.+ .+-.+.....|+..|..|
T Consensus 120 ~ekRtFLRq~Le-----arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsA 194 (411)
T KOG1463|consen 120 REKRTFLRQSLE-----ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSA 194 (411)
T ss_pred HHhHHHHHHHHH-----HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHH
Confidence 346667777765 345555556667788887766555421 11111111 222333455677777777
Q ss_pred HHhC-----CCCHHHHHH--HHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHH-HcCCHHHHHHHHHH
Q 007407 419 RKKL-----PKERAIWIA--AAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVAD-RAGSVVTCVAIITN 489 (605)
Q Consensus 419 l~~~-----p~~~~iwi~--~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e-~~g~~~~A~~i~~~ 489 (605)
+..- |.....-+- -|-|. ...++..+-++|-+|++.+..-+.....-.-++|...|. ..+..++...++..
T Consensus 195 RT~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~ 274 (411)
T KOG1463|consen 195 RTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSA 274 (411)
T ss_pred HHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhh
Confidence 7642 222111111 12233 345788999999999887754332212222333333332 34556666666544
Q ss_pred --HHHhCCCchhhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhcC
Q 007407 490 --TIEIGVDEEDKKRTWVADVEECKKR--GSIETARAIFSPACTVFL 532 (605)
Q Consensus 490 --al~~~p~~~~~~~~~~~~a~~~~~~--g~~~~A~~i~~~al~~~P 532 (605)
++...-. ...+...-|+.+.++ .+|+.|..-|+.=|.-+|
T Consensus 275 K~~l~y~g~---~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 275 KLALKYAGR---DIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred HHHHhccCc---chHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence 3332222 355555555555432 356666666665555444
No 389
>PRK15338 type III secretion system regulator InvE; Provisional
Probab=52.74 E-value=3.2e+02 Score=29.20 Aligned_cols=46 Identities=2% Similarity=-0.154 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007407 481 VTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTV 530 (605)
Q Consensus 481 ~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~ 530 (605)
..-+.+|+..+..+.. -..+|-.+...| ...+.+.+...+..||..
T Consensus 184 ~~LR~lYR~Fl~~d~~---~~~iY~~Wieey-g~~~R~~il~Fl~~AL~~ 229 (372)
T PRK15338 184 GLLRASYRQFLQSESH---EVEIYSDWIASY-GYQRRLVVLDFIEGSLLT 229 (372)
T ss_pred HHHHHHHHHHHhccCc---HHHHHHHHHHHh-CccHHHHHHHHHHHHHHh
Confidence 5556777777776544 455555665555 444566777777777654
No 390
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=52.51 E-value=31 Score=23.92 Aligned_cols=28 Identities=14% Similarity=0.069 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007407 537 IWLKAAQLEKSYGCRESLIALLRKAVTY 564 (605)
Q Consensus 537 ~w~~la~l~~~~g~~e~A~~~lekAl~~ 564 (605)
++..+|.+-...++++.|..-|++++.+
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4566666666677777777777776654
No 391
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=52.33 E-value=2.8e+02 Score=29.96 Aligned_cols=102 Identities=10% Similarity=0.053 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------H
Q 007407 465 DTWMKEAEVADRAGSVVTCVAIITNTIEI---GVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTK------K 535 (605)
Q Consensus 465 ~~wl~~A~~~e~~g~~~~A~~i~~~al~~---~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~------~ 535 (605)
..|.-+...++..|....-+..+...+.. .-+++...-+..-+...|...+.++.|-....+.. +|.. .
T Consensus 170 k~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~--~pe~~snne~A 247 (493)
T KOG2581|consen 170 KLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV--YPEAASNNEWA 247 (493)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc--CccccccHHHH
Confidence 34555555556666544444433332221 11111122222223445555666666666555442 2321 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 007407 536 NIWLKAAQLEKSYGCRESLIALLRKAVTYCPQA 568 (605)
Q Consensus 536 ~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~ 568 (605)
-..+.+|.+-.-++++..|.++|-.|+...|++
T Consensus 248 RY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 248 RYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 334445666666677777777777777777764
No 392
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=50.84 E-value=2.6e+02 Score=30.18 Aligned_cols=104 Identities=9% Similarity=-0.032 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----cCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC--H
Q 007407 500 KKRTWVADVEECKKRGSIETARAIFSPACTV-----FLTK-KNIWLKAAQLEKSYGCRESLIALLRKAVTYCP--QA--E 569 (605)
Q Consensus 500 ~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~-----~P~~-~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P--~~--~ 569 (605)
...+|+-+...+...|+...-+..+...+.. +-.. ..+..-+-..+.-.+.++.|.++..+...-.. ++ .
T Consensus 168 ~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~A 247 (493)
T KOG2581|consen 168 AAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWA 247 (493)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHH
Confidence 3455666667777788877777776655443 2222 23333345556666778888887776652221 22 2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCC
Q 007407 570 VLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSE 603 (605)
Q Consensus 570 ~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~ 603 (605)
...+.+|++..-++++..|.+++-.|+...|++.
T Consensus 248 RY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 248 RYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 2334457777789999999999999999999754
No 393
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.52 E-value=2.1e+02 Score=32.45 Aligned_cols=64 Identities=13% Similarity=0.164 Sum_probs=34.9
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHH
Q 007407 383 ILLHRAVECCPLDVELWLALVRLETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERG 451 (605)
Q Consensus 383 ~~l~rAl~~~P~~~~lw~aLa~le~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~a 451 (605)
.+.++|++.+|+...-.-...++++++.|..+..++ ++..-|-.++.+. +.|++..|...|.++
T Consensus 628 g~~e~AL~~s~D~d~rFelal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 628 GMKEQALELSTDPDQRFELALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred cchHhhhhcCCChhhhhhhhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 345556666665544333334555555555443332 3344466666655 666666666666665
No 394
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=50.24 E-value=24 Score=21.99 Aligned_cols=25 Identities=8% Similarity=-0.027 Sum_probs=14.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 007407 538 WLKAAQLEKSYGCRESLIALLRKAV 562 (605)
Q Consensus 538 w~~la~l~~~~g~~e~A~~~lekAl 562 (605)
|..+...+.+.|++++|.++|++..
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 4555555666666666666665544
No 395
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=49.85 E-value=32 Score=24.69 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=14.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 007407 506 ADVEECKKRGSIETARAIFSPACT 529 (605)
Q Consensus 506 ~~a~~~~~~g~~~~A~~i~~~al~ 529 (605)
.+|..|+..|+.+.|+.+++.++.
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Confidence 445556666666666666665553
No 396
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=49.73 E-value=1.9e+02 Score=25.81 Aligned_cols=91 Identities=16% Similarity=0.091 Sum_probs=65.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhc---CCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCC
Q 007407 508 VEECKKRGSIETARAIFSPACTVF---LTK---------KNIWLKAAQLEKSYGCRESLIALLRKAVTY-------CPQA 568 (605)
Q Consensus 508 a~~~~~~g~~~~A~~i~~~al~~~---P~~---------~~~w~~la~l~~~~g~~e~A~~~lekAl~~-------~P~~ 568 (605)
++-.+..|.|++|-.-|++|.+.. |.. .-++-.|+..+...|++++++..-++||.. +.+.
T Consensus 16 ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qde 95 (144)
T PF12968_consen 16 AERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDE 95 (144)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccccc
Confidence 445566789999999999998763 331 234555677778899999988888888865 3455
Q ss_pred HHHHHHH----HHHHHHcCChHHHHHHHHHHHHH
Q 007407 569 EVLWLMG----AKEKWLAGDVPATRDILQEAYAA 598 (605)
Q Consensus 569 ~~l~l~~----a~~~~~~gd~~~Ar~il~kAl~~ 598 (605)
..+|+.. |..+...|..++|...|..|-+.
T Consensus 96 GklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 96 GKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 7788753 44566699999999999998764
No 397
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=49.63 E-value=2.9e+02 Score=27.86 Aligned_cols=76 Identities=14% Similarity=0.036 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----------
Q 007407 519 TARAIFSPACTVFLTKKNIWLKAAQLEKSY----GCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAG----------- 583 (605)
Q Consensus 519 ~A~~i~~~al~~~P~~~~~w~~la~l~~~~----g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~g----------- 583 (605)
.|+..|.++.... +....+.++.++..- .+..+|...|++|.+... ...++.++ .++..|
T Consensus 173 ~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~ 247 (292)
T COG0790 173 KALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTA 247 (292)
T ss_pred hHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhccc
Confidence 4566666655543 555555666555431 256667777777766654 44444444 444433
Q ss_pred ----ChHHHHHHHHHHHHHC
Q 007407 584 ----DVPATRDILQEAYAAI 599 (605)
Q Consensus 584 ----d~~~Ar~il~kAl~~~ 599 (605)
+...|...+.++...-
T Consensus 248 ~~~~~~~~a~~~~~~~~~~~ 267 (292)
T COG0790 248 AKEEDKKQALEWLQKACELG 267 (292)
T ss_pred ccCCCHHHHHHHHHHHHHcC
Confidence 6666666666665443
No 398
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=48.86 E-value=4.9e+02 Score=30.26 Aligned_cols=60 Identities=10% Similarity=0.097 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHH---------HHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007407 500 KKRTWVADVEECKKRGSIETARAIF---------SPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLR 559 (605)
Q Consensus 500 ~~~~~~~~a~~~~~~g~~~~A~~i~---------~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~le 559 (605)
+..-|...++.|...++.+.-..+| +......|++..++-.+|.+....|.-++|.+.|-
T Consensus 808 ~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 808 EMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred HHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHH
Confidence 4455777777777666655443332 34455679999999999999999998888877764
No 399
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=48.67 E-value=1.1e+02 Score=34.80 Aligned_cols=79 Identities=13% Similarity=0.088 Sum_probs=60.2
Q ss_pred HcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHH
Q 007407 476 RAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLI 555 (605)
Q Consensus 476 ~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~ 555 (605)
++...+.+++.++.-+.-+.. .....+..|+++-.-+..+.|-++|+..+..+|+ ..++.++.-+.+.|-...|.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 94 (578)
T PRK15490 20 QEKKLAQAVALIDSELPTEAL---TSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQ 94 (578)
T ss_pred HHhhHHHHHHHHHHhCCccch---hHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHH
Confidence 344466666666655443322 5556777888888888999999999999999888 67888888888889888888
Q ss_pred HHHH
Q 007407 556 ALLR 559 (605)
Q Consensus 556 ~~le 559 (605)
.+++
T Consensus 95 ~~~~ 98 (578)
T PRK15490 95 LILK 98 (578)
T ss_pred HHHH
Confidence 8888
No 400
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=48.48 E-value=3.9e+02 Score=28.95 Aligned_cols=98 Identities=7% Similarity=0.004 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC----HHH
Q 007407 480 VVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRG--SIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGC----RES 553 (605)
Q Consensus 480 ~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g--~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~----~e~ 553 (605)
.+.-......++..+|. ...+|..+.-.+.+.+ ++..=..+++++++.+|.+...|...-.+...... ..+
T Consensus 91 ld~eL~~~~~~L~~npk---sY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~ 167 (421)
T KOG0529|consen 91 LDEELKYVESALKVNPK---SYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKE 167 (421)
T ss_pred hHHHHHHHHHHHHhCch---hHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchh
Confidence 34445667778888887 7888888887777654 46788889999999999999999877555544322 345
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007407 554 LIALLRKAVTYCPQAEVLWLMGAKEKW 580 (605)
Q Consensus 554 A~~~lekAl~~~P~~~~l~l~~a~~~~ 580 (605)
=+++..+++..|+.+-.+|.....++-
T Consensus 168 El~ftt~~I~~nfSNYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 168 ELEFTTKLINDNFSNYSAWHYRSLLLS 194 (421)
T ss_pred HHHHHHHHHhccchhhhHHHHHHHHHH
Confidence 677888888888888888887777654
No 401
>PRK12798 chemotaxis protein; Reviewed
Probab=47.96 E-value=4e+02 Score=28.95 Aligned_cols=180 Identities=17% Similarity=0.137 Sum_probs=112.0
Q ss_pred CHHHHHHHHHHHH-HhCCCCHHHHHHHHH--h---hcHHHHHHHHHHHHHhCCCC--HH-HHHHHHHHH-HcCCHHHHHH
Q 007407 377 SEEEARILLHRAV-ECCPLDVELWLALVR--L---ETYGVARSVLNKARKKLPKE--RA-IWIAAAKLE-ANGNTSMVGK 446 (605)
Q Consensus 377 ~~e~A~~~l~rAl-~~~P~~~~lw~aLa~--l---e~~e~A~~vL~~al~~~p~~--~~-iwi~~a~Le-~~g~~~~a~~ 446 (605)
+..+|++.|.... ...|.....+++|+. + .++..|.+.|+.++-..|.- .+ ++-...-+- +.|+.++...
T Consensus 127 r~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~ 206 (421)
T PRK12798 127 RGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEA 206 (421)
T ss_pred CHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHH
Confidence 6677777776643 234556666666653 2 26788999999999999962 12 222222344 7888888888
Q ss_pred HHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007407 447 IIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEI-GVDEEDKKRTWVADVEECKKRGSIETARAIFS 525 (605)
Q Consensus 447 i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~-~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~ 525 (605)
+-.+.+..+..+- .-...|...+....+.+. +.-.+.+..++.. +|+ ....+|+..+....-.|+.+-|+-.-.
T Consensus 207 la~~Y~rRF~~S~--YA~~F~~~F~~~~~~~~d-~~~~~~l~~~ls~~d~~--~q~~lYL~iAR~Ali~Gk~~lA~~As~ 281 (421)
T PRK12798 207 LARNYLRRFRHSP--YASQFAQRFVDLVVRLDD-EIRDARLVEILSFMDPE--RQRELYLRIARAALIDGKTELARFASE 281 (421)
T ss_pred HHHHHHHHhccCc--hHHHHHHHHHHHHHhccc-cccHHHHHHHHHhcCch--hHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8888887776542 123344444444444432 1122345566664 443 367789999999999999999999999
Q ss_pred HHHHhcCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007407 526 PACTVFLT----KKNIWLKAAQLEKSYGCRESLIALLRKA 561 (605)
Q Consensus 526 ~al~~~P~----~~~~w~~la~l~~~~g~~e~A~~~lekA 561 (605)
+++.+-.. ...+.++.+....-..++++++..+...
T Consensus 282 ~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 282 RALKLADPDSADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred HHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 99987532 2233333333334445667776666643
No 402
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=47.65 E-value=59 Score=32.61 Aligned_cols=42 Identities=12% Similarity=0.120 Sum_probs=18.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007407 521 RAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAV 562 (605)
Q Consensus 521 ~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl 562 (605)
+..|.+|+.+.|+....|..+|.++...|+.=.|.-.|-+++
T Consensus 2 ~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl 43 (278)
T PF10373_consen 2 ERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSL 43 (278)
T ss_dssp HHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444
No 403
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=46.30 E-value=76 Score=30.27 Aligned_cols=46 Identities=13% Similarity=0.086 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 007407 483 CVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFL 532 (605)
Q Consensus 483 A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P 532 (605)
..+..++.+...|. ..++..++..+...|+.++|+....++...+|
T Consensus 130 ~~~~a~~~l~~~P~----~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 130 YIEWAERLLRRRPD----PNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHhCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34445555555553 55666667777777777777777777777777
No 404
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=45.66 E-value=5e+02 Score=29.41 Aligned_cols=212 Identities=16% Similarity=0.049 Sum_probs=111.4
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHhh-----cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcC-----CHHHHHH
Q 007407 377 SEEEARILLHRAVECCPLDVELWLALVRLE-----TYGVARSVLNKARKKLPKERAIWIAAAKLEANG-----NTSMVGK 446 (605)
Q Consensus 377 ~~e~A~~~l~rAl~~~P~~~~lw~aLa~le-----~~e~A~~vL~~al~~~p~~~~iwi~~a~Le~~g-----~~~~a~~ 446 (605)
+.+.|..+|.++.+....+....+...... ++..|...|..|-+. .+....+.++.++..| +...|..
T Consensus 308 d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~ 385 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFA 385 (552)
T ss_pred cHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHH
Confidence 456677777777766544444444333221 234677777766554 3344455555544333 4777777
Q ss_pred HHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHH-HHHH----cCCHHHHH
Q 007407 447 IIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVE-ECKK----RGSIETAR 521 (605)
Q Consensus 447 i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~-~~~~----~g~~~~A~ 521 (605)
++.++.+...- ...|...+-.+...+.+.++...+......+-+.......++.... .... ....+.+.
T Consensus 386 ~~k~aA~~g~~------~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~ 459 (552)
T KOG1550|consen 386 YYKKAAEKGNP------SAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAF 459 (552)
T ss_pred HHHHHHHccCh------hhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHH
Confidence 77777665311 1123332222222255555555544444433221112222222211 1111 11344555
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC--ChHHHHHHHHH
Q 007407 522 AIFSPACTVFLTKKNIWLKAAQLEKSY----GCRESLIALLRKAVTYCPQAEVLWLMGAKEKWL-AG--DVPATRDILQE 594 (605)
Q Consensus 522 ~i~~~al~~~P~~~~~w~~la~l~~~~----g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~-~g--d~~~Ar~il~k 594 (605)
..+.++.. +.+..+...++..+..- .+++.+...|.+|...+ ......++..+.. .| .+..|...|++
T Consensus 460 ~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~ 534 (552)
T KOG1550|consen 460 SLYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQ 534 (552)
T ss_pred HHHHHHHh--ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHH
Confidence 55555533 46667777777766643 24778888888888877 4444555554443 11 26788888888
Q ss_pred HHHHCCC
Q 007407 595 AYAAIPN 601 (605)
Q Consensus 595 Al~~~P~ 601 (605)
+.+.+..
T Consensus 535 ~~~~~~~ 541 (552)
T KOG1550|consen 535 ASEEDSR 541 (552)
T ss_pred HHhcCch
Confidence 8876654
No 405
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=44.32 E-value=97 Score=32.63 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007407 466 TWMKEAEVADRAGSVVTCVAIITNTIEI 493 (605)
Q Consensus 466 ~wl~~A~~~e~~g~~~~A~~i~~~al~~ 493 (605)
.|+-.|.++...|.++..+.+|+.|+..
T Consensus 142 YWIC~Arl~~~~~~~e~vi~iyEeAi~a 169 (353)
T PF15297_consen 142 YWICLARLEPRTGPIEDVIAIYEEAILA 169 (353)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHc
Confidence 3444444333333333344444444333
No 406
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=44.31 E-value=37 Score=27.46 Aligned_cols=35 Identities=20% Similarity=0.353 Sum_probs=25.7
Q ss_pred cHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Q 007407 266 DILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMC 315 (605)
Q Consensus 266 d~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~ 315 (605)
++++|..++++++.. -..|++++|..+|.++++.|
T Consensus 2 ~l~kai~Lv~~A~~e---------------D~~gny~eA~~lY~~ale~~ 36 (75)
T cd02680 2 DLERAHFLVTQAFDE---------------DEKGNAEEAIELYTEAVELC 36 (75)
T ss_pred CHHHHHHHHHHHHHh---------------hHhhhHHHHHHHHHHHHHHH
Confidence 356677777777443 35688999999999998875
No 407
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=44.23 E-value=38 Score=27.35 Aligned_cols=19 Identities=37% Similarity=0.546 Sum_probs=11.4
Q ss_pred HcCCHHHHHHHHHHHHHhC
Q 007407 547 SYGCRESLIALLRKAVTYC 565 (605)
Q Consensus 547 ~~g~~e~A~~~lekAl~~~ 565 (605)
..|++++|+.+|..||+.|
T Consensus 18 ~~gny~eA~~lY~~ale~~ 36 (75)
T cd02680 18 EKGNAEEAIELYTEAVELC 36 (75)
T ss_pred HhhhHHHHHHHHHHHHHHH
Confidence 4456666666666666554
No 408
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=43.88 E-value=1.2e+02 Score=37.24 Aligned_cols=130 Identities=12% Similarity=0.045 Sum_probs=91.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-----CCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------cCCCH
Q 007407 469 KEAEVADRAGSVVTCVAIITNTIEIG-----VDEEDKKRTWVADVEECKKRGSIETARAIFSPACTV--------FLTKK 535 (605)
Q Consensus 469 ~~A~~~e~~g~~~~A~~i~~~al~~~-----p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~--------~P~~~ 535 (605)
..++.+..+|.+..|.. +-+.+... .-.++....+..++.++...++.++|...-.+++-+ .|+..
T Consensus 937 e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~ 1015 (1236)
T KOG1839|consen 937 EQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTK 1015 (1236)
T ss_pred hhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHH
Confidence 33445555666777776 33333321 111226777888999999999999999987766543 26667
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHHC
Q 007407 536 NIWLKAAQLEKSYGCRESLIALLRKAVTY-----CPQAE---VLWLMGAKEKWLAGDVPATRDILQEAYAAI 599 (605)
Q Consensus 536 ~~w~~la~l~~~~g~~e~A~~~lekAl~~-----~P~~~---~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~ 599 (605)
..+..++.++...++...|...+.++... -|++| .+..+++.++...++.+-|..+++.|+..+
T Consensus 1016 ~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1016 LAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred HHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 77888888888888888899999988765 23443 334556666666789999999999998854
No 409
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=43.79 E-value=3e+02 Score=30.38 Aligned_cols=126 Identities=6% Similarity=-0.016 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHH
Q 007407 408 YGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAI 486 (605)
Q Consensus 408 ~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i 486 (605)
.-.|..-+..++...|.+|......+.+. ..|.++.+...+.-+-..+... +...-. .....-..|....|...
T Consensus 305 ~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~----~~~~~~-~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 305 IIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTT----DSTLRC-RLRSLHGLARWREALST 379 (831)
T ss_pred HHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCC----chHHHH-HHHhhhchhhHHHHHHH
Confidence 34455666677778888877666666665 7787777776665443333221 111111 11222334556666666
Q ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 007407 487 ITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKA 541 (605)
Q Consensus 487 ~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~l 541 (605)
..-.+....+ .+++..-.|......|-++++...+++.+.++|..-.-|..+
T Consensus 380 a~~~l~~eie---~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~ 431 (831)
T PRK15180 380 AEMMLSNEIE---DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNF 431 (831)
T ss_pred HHHHhccccC---ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceee
Confidence 6666665554 333333333444456778889999999998887766666543
No 410
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=43.59 E-value=54 Score=23.33 Aligned_cols=32 Identities=22% Similarity=0.108 Sum_probs=23.3
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q 007407 557 LLRKAVTYCPQAEVLWLMGAKEKWLAGDVPAT 588 (605)
Q Consensus 557 ~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~A 588 (605)
-|..|+-.+|++...++.||.-+-.+|+...|
T Consensus 4 all~AI~~~P~ddt~RLvYADWL~e~gdp~ra 35 (42)
T TIGR02996 4 ALLRAILAHPDDDTPRLVYADWLDEHGDPARA 35 (42)
T ss_pred HHHHHHHhCCCCcchHHHHHHHHHHcCCHHHH
Confidence 45667777788878888888877777777544
No 411
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=43.56 E-value=2.3e+02 Score=28.13 Aligned_cols=57 Identities=11% Similarity=0.001 Sum_probs=33.6
Q ss_pred HHHcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 007407 435 LEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVD 496 (605)
Q Consensus 435 Le~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~ 496 (605)
|-+.++..+++...+.-++..|. +......+...+--.|+.++|...++-+-...|+
T Consensus 11 LL~~~sL~dai~~a~~qVkakPt-----da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~ 67 (273)
T COG4455 11 LLDDNSLQDAIGLARDQVKAKPT-----DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQ 67 (273)
T ss_pred HHHhccHHHHHHHHHHHHhcCCc-----cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcc
Confidence 33556666666666665555432 3333333344455567777777777777777766
No 412
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=43.25 E-value=47 Score=20.99 Aligned_cols=27 Identities=11% Similarity=0.063 Sum_probs=17.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007407 538 WLKAAQLEKSYGCRESLIALLRKAVTY 564 (605)
Q Consensus 538 w~~la~l~~~~g~~e~A~~~lekAl~~ 564 (605)
|..+...+.+.|++++|.++|++....
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 555666666777777777777765543
No 413
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=42.69 E-value=1.5e+02 Score=33.73 Aligned_cols=79 Identities=14% Similarity=0.143 Sum_probs=58.9
Q ss_pred HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCC
Q 007407 437 ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGS 516 (605)
Q Consensus 437 ~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~ 516 (605)
++...+.+..+++.-+ |.. ..+....+..|..+-.-|..+.|-++|++.+.++|+ +.++.+|.-+.+.|-
T Consensus 20 ~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 89 (578)
T PRK15490 20 QEKKLAQAVALIDSEL---PTE--ALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND-----EARYEYARRLYNTGL 89 (578)
T ss_pred HHhhHHHHHHHHHHhC---Ccc--chhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc-----chHHHHHHHHHhhhh
Confidence 3334555555554432 322 235667778888888888899999999999999876 457788999999999
Q ss_pred HHHHHHHHH
Q 007407 517 IETARAIFS 525 (605)
Q Consensus 517 ~~~A~~i~~ 525 (605)
...|+.++.
T Consensus 90 ~~~~~~~~~ 98 (578)
T PRK15490 90 AKDAQLILK 98 (578)
T ss_pred hhHHHHHHH
Confidence 999999988
No 414
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=42.54 E-value=2e+02 Score=28.78 Aligned_cols=59 Identities=17% Similarity=0.027 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHH
Q 007407 536 NIWLKAAQLEKSYGCRESLIALLRKAVTYCPQA------EVLWLMGAKEKWLAGDVPATRDILQE 594 (605)
Q Consensus 536 ~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~------~~l~l~~a~~~~~~gd~~~Ar~il~k 594 (605)
.+-..+|..+...|+++.|.++|+.++...-.. ..+...+..+....|+.+....+.-+
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 444566788888888888888888886554211 23344455566677877766655433
No 415
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=41.90 E-value=1.7e+02 Score=30.51 Aligned_cols=83 Identities=17% Similarity=0.137 Sum_probs=59.8
Q ss_pred cccCchhHHhhhhhhcccchhhhccHHHHHHHHHHHHHhCC--C------ChHHHHHHHHHHHHhcCHHHHHHHHHHH--
Q 007407 242 TVFDPSGYLTRMNDLKITTNSELRDILKARKIVRAVTKNSP--K------KPLGWIQAARLEELANEEAAARKLITKG-- 311 (605)
Q Consensus 242 ~~~dp~~yl~~L~~~~~~~~~~~gd~~kAr~ll~~al~~~P--~------~~~~wia~Arle~~~g~~~~Ar~ll~~~-- 311 (605)
.++.|..++.++..+.+.-|...++++.|-+.|.-. ..+- . ....+|..++++...++..+|..++.++
T Consensus 94 rvisfeEqv~~irl~LAsiYE~Eq~~~~aaq~L~~I-~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSi 172 (399)
T KOG1497|consen 94 RVISFEEQVASIRLHLASIYEKEQNWRDAAQVLVGI-PLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASI 172 (399)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc-CcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 457788888888777766688889998888876433 1111 1 1245788899999999999999998886
Q ss_pred HhhCCCCHHHHHHH
Q 007407 312 CNMCPKNEDVWLEA 325 (605)
Q Consensus 312 l~~~P~~~~lwle~ 325 (605)
+..+..|+++.+++
T Consensus 173 l~a~~~Ne~Lqie~ 186 (399)
T KOG1497|consen 173 LQAESSNEQLQIEY 186 (399)
T ss_pred hhhcccCHHHHHHH
Confidence 34455777776665
No 416
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=41.76 E-value=4.5e+02 Score=27.83 Aligned_cols=93 Identities=15% Similarity=0.081 Sum_probs=47.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhc------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC--HHHH
Q 007407 506 ADVEECKKRGSIETARAIFSPACTVF------LTKKNIWLKAAQLEKSYGCRESLIALLRKAVTY-----CPQA--EVLW 572 (605)
Q Consensus 506 ~~a~~~~~~g~~~~A~~i~~~al~~~------P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~-----~P~~--~~l~ 572 (605)
.++.+|...++|.+|..+....+.-. +.-..+...=...+....+..+|...+--|-.. ||-. ..+=
T Consensus 133 rli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lD 212 (411)
T KOG1463|consen 133 RLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLD 212 (411)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHH
Confidence 34556666777777777665554322 112233343445555555666666555555332 4321 1222
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHH
Q 007407 573 LMGAKEKWLAGDVPATRDILQEAYAA 598 (605)
Q Consensus 573 l~~a~~~~~~gd~~~Ar~il~kAl~~ 598 (605)
++-|.++....|+.-|..+|-+||+-
T Consensus 213 LqSGIlha~ekDykTafSYFyEAfEg 238 (411)
T KOG1463|consen 213 LQSGILHAAEKDYKTAFSYFYEAFEG 238 (411)
T ss_pred HhccceeecccccchHHHHHHHHHcc
Confidence 22233333456777777777777664
No 417
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=41.71 E-value=56 Score=22.64 Aligned_cols=28 Identities=14% Similarity=0.033 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007407 503 TWVADVEECKKRGSIETARAIFSPACTV 530 (605)
Q Consensus 503 ~~~~~a~~~~~~g~~~~A~~i~~~al~~ 530 (605)
++..+++.....++|+.|..-|.++|++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 5667788888889999999999999875
No 418
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=41.10 E-value=1.2e+02 Score=24.78 Aligned_cols=45 Identities=11% Similarity=-0.062 Sum_probs=33.2
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH---HHcCChHHHHHH
Q 007407 547 SYGCRESLIALLRKAVTYCPQAEVLWLMGAKEK---WLAGDVPATRDI 591 (605)
Q Consensus 547 ~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~---~~~gd~~~Ar~i 591 (605)
...+.+.|+..++++++..++.+.-|..+|-+. ...|++.++.+.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678899999999999998888887777654 445666554443
No 419
>TIGR01987 HI0074 nucleotidyltransferase substrate binding protein, HI0074 family. The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins. It forms a complex with HI0073, encoded by the adjacent gene and containing a nucleotidyltransferase nucleotide binding domain (pfam01909).
Probab=40.49 E-value=1.6e+02 Score=26.20 Aligned_cols=42 Identities=10% Similarity=0.230 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhcC----HHHHHHHHHHHHhhCC-CCHHHHHHHHhh
Q 007407 287 GWIQAARLEELANE----EAAARKLITKGCNMCP-KNEDVWLEACRL 328 (605)
Q Consensus 287 ~wia~Arle~~~g~----~~~Ar~ll~~~l~~~P-~~~~lwle~a~L 328 (605)
+|-.+-++.+..|- ...-+.++..|.+..= .+.++|+.....
T Consensus 41 aWK~lK~~L~~~G~~~~~~~spr~~ir~A~~~glI~d~~~W~~ml~~ 87 (123)
T TIGR01987 41 AWKLMKRYLAQEGINDIGAYSPKDVLKEAFRAGLIGDESLWIAMLDD 87 (123)
T ss_pred HHHHHHHHHHHcCCcccccCCHHHHHHHHHHcCCcCCHHHHHHHHHH
Confidence 55555444444443 2223666666655432 568899988765
No 420
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=40.41 E-value=2.5e+02 Score=33.94 Aligned_cols=124 Identities=11% Similarity=-0.059 Sum_probs=74.2
Q ss_pred CCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH----HHHcC---CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 007407 478 GSVVTCVAIITNTIEIGVDEEDKKRTWVADVEE----CKKRG---SIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGC 550 (605)
Q Consensus 478 g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~----~~~~g---~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~ 550 (605)
..++.|...|+++-...|.-....++.+..+-. ....| .+++|...|++.. --|.-+-=|+--|.+|...|+
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 567 (932)
T PRK13184 489 KLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKALVYQRLGE 567 (932)
T ss_pred HHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHHHHHHhhh
Confidence 347888888888888877621122233322221 22233 3556666665542 235666667777889999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----cCChHHHHHHHHHHHHHCCCC
Q 007407 551 RESLIALLRKAVTYCPQAEVLWLMGAKEKWL-----AGDVPATRDILQEAYAAIPNS 602 (605)
Q Consensus 551 ~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~-----~gd~~~Ar~il~kAl~~~P~~ 602 (605)
+++-++.|.-|++..|++|.+-..--.+.++ ..+-..|....--++.+.|.+
T Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (932)
T PRK13184 568 YNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEK 624 (932)
T ss_pred HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 9999999999999999887654332222111 222334444445555666654
No 421
>PF12531 DUF3731: DNA-K related protein ; InterPro: IPR021030 Proteins in this family are bacterial proteins of approximately 250 amino acids in length. There are two conserved sequence motifs: RPG and WRR. The proteins in this family are frequently annotated as DNA-K related proteins however there is little accompanying literature to confirm this.
Probab=40.05 E-value=4.1e+02 Score=26.79 Aligned_cols=154 Identities=19% Similarity=0.232 Sum_probs=90.6
Q ss_pred CCChHHHHHHHHHHHHhc--------CHHHHHHHHHHHHhhCCCCHHHHHHHH----hhcCc---hhHHHHHHHHHhhC-
Q 007407 282 PKKPLGWIQAARLEELAN--------EEAAARKLITKGCNMCPKNEDVWLEAC----RLARP---DEAKSVVAKGVRQI- 345 (605)
Q Consensus 282 P~~~~~wia~Arle~~~g--------~~~~Ar~ll~~~l~~~P~~~~lwle~a----~L~~~---~~Ak~~l~~al~~~- 345 (605)
+.|...|+.++-++.+-| .+++.-.+|.+|++. +++..+|.+.= |+.-. ..-..++.....+.
T Consensus 2 a~HEr~WlnLaGfcLRPGfG~~lD~wRv~qlW~l~~~g~q~-~~~~q~w~ewW~lWRRiAGGL~~~qQ~~l~~~ia~~l~ 80 (249)
T PF12531_consen 2 ADHERRWLNLAGFCLRPGFGDPLDDWRVEQLWKLYQQGIQF-PKDAQVWSEWWTLWRRIAGGLNEGQQEQLFDDIAPYLQ 80 (249)
T ss_pred hHHHHHHHHHhhhhcCCCCCCCccHHHHHHHHHHhhcccCC-CCcchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 456778888888887643 367888899999885 67777776653 33322 22334555544332
Q ss_pred CCcHHHHHHHHHHHHhCCC-cHHHHHHHHHhCCH------HHHHHHHHHHHHhCCCCHHHHHHHHHhhc-----------
Q 007407 346 PKSANKIRALRMALDEIPD-SVRLWKALVEISSE------EEARILLHRAVECCPLDVELWLALVRLET----------- 407 (605)
Q Consensus 346 P~s~~a~~vl~kAle~~P~-~~~lw~~l~~le~~------e~A~~~l~rAl~~~P~~~~lw~aLa~le~----------- 407 (605)
|......... -...|. ..++|..++.||.. +-+.-++.+..+- ..+...|=+|+++..
T Consensus 81 p~~~~~~~~~---~~~~~~~~~emvRl~asLErL~~~~K~elg~wll~rL~~~-~~~~~~wWAlGRlgaR~p~yGs~h~V 156 (249)
T PF12531_consen 81 PAAQRNRKKP---KGPQPQSYDEMVRLAASLERLPVEDKIELGEWLLKRLQKP-SESAQHWWALGRLGARVPFYGSAHNV 156 (249)
T ss_pred cccccccccc---cccCccCHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCC-CCCcchHHHHHHHHhcCcccCCcccc
Confidence 2221100000 011122 25688888888832 4444566663332 234556677888752
Q ss_pred --HHHHHHHHHHHHHhCCCC-HHHHHHHHHHH-HcCC
Q 007407 408 --YGVARSVLNKARKKLPKE-RAIWIAAAKLE-ANGN 440 (605)
Q Consensus 408 --~e~A~~vL~~al~~~p~~-~~iwi~~a~Le-~~g~ 440 (605)
.+.|...+...++..... +.+-++++++- ..|+
T Consensus 157 vp~~~~~~wl~~ll~~dwk~~~~a~fA~~q~aR~TgD 193 (249)
T PF12531_consen 157 VPPEVAEQWLDALLALDWKKPPPAAFAAVQMARMTGD 193 (249)
T ss_pred cCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhcCC
Confidence 577888999999888554 45566666776 6664
No 422
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.83 E-value=3.1e+02 Score=31.43 Aligned_cols=99 Identities=12% Similarity=-0.011 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchh---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 007407 465 DTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEED---KKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKA 541 (605)
Q Consensus 465 ~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~---~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~l 541 (605)
-.|...+...+. .++.++...|...+..-|.+.. -....-.++-.|....+.+.|.+++++|-+.+|.++-.-+..
T Consensus 356 iLWn~A~~~F~~-~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 356 LLWNTAKKLFKM-EKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHHhhHHHHHH-HHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 356665554443 4578888888888877665322 122333456677888899999999999999999887666666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Q 007407 542 AQLEKSYGCRESLIALLRKAVTY 564 (605)
Q Consensus 542 a~l~~~~g~~e~A~~~lekAl~~ 564 (605)
.......|+-++|+.+.......
T Consensus 435 ~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 435 LQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHhcchHHHHHHHHHHHhh
Confidence 66666678888888888877654
No 423
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=39.15 E-value=8.4e+02 Score=30.19 Aligned_cols=18 Identities=17% Similarity=-0.044 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHhccC
Q 007407 441 TSMVGKIIERGIRALQGE 458 (605)
Q Consensus 441 ~~~a~~i~~~al~~~p~~ 458 (605)
.+...+-|.+|+.++..-
T Consensus 889 ID~~L~ry~~AL~hLs~~ 906 (1265)
T KOG1920|consen 889 IDDYLKRYEDALSHLSEC 906 (1265)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 555556666677666543
No 424
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=38.96 E-value=3.7e+02 Score=25.98 Aligned_cols=50 Identities=16% Similarity=0.013 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHHHHhC-CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007407 549 GCRESLIALLRKAVTYC-PQA-EVLWLMGAKEKWLAGDVPATRDILQEAYAA 598 (605)
Q Consensus 549 g~~e~A~~~lekAl~~~-P~~-~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~ 598 (605)
.+.+.|.+.--+|.+.. |.. ..+..||..-----.|.++|..+-.+|.++
T Consensus 182 kDMdka~qfa~kACel~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 182 KDMDKALQFAIKACELDIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred HhHHHHHHHHHHHHhcCChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 34556666666665553 322 334444422000134567788887777765
No 425
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=38.73 E-value=95 Score=19.92 Aligned_cols=27 Identities=15% Similarity=-0.033 Sum_probs=18.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 007407 521 RAIFSPACTVFLTKKNIWLKAAQLEKS 547 (605)
Q Consensus 521 ~~i~~~al~~~P~~~~~w~~la~l~~~ 547 (605)
......++..+|.+.++|...-.+..+
T Consensus 3 l~~~~~~l~~~pknys~W~yR~~ll~~ 29 (31)
T PF01239_consen 3 LEFTKKALEKDPKNYSAWNYRRWLLKQ 29 (31)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcccccHHHHHHHHHHH
Confidence 445667778888888888877655543
No 426
>TIGR01987 HI0074 nucleotidyltransferase substrate binding protein, HI0074 family. The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins. It forms a complex with HI0073, encoded by the adjacent gene and containing a nucleotidyltransferase nucleotide binding domain (pfam01909).
Probab=38.05 E-value=2.9e+02 Score=24.55 Aligned_cols=17 Identities=6% Similarity=-0.206 Sum_probs=9.5
Q ss_pred CHHHHHHHHHHHHhhCC
Q 007407 300 EEAAARKLITKGCNMCP 316 (605)
Q Consensus 300 ~~~~Ar~ll~~~l~~~P 316 (605)
++.+|...+++++...|
T Consensus 4 nf~kAl~~L~~a~~~~~ 20 (123)
T TIGR01987 4 SFEQALMQLSDANWFDL 20 (123)
T ss_pred HHHHHHHHHHHHHhcCc
Confidence 45556666666665533
No 427
>PF13041 PPR_2: PPR repeat family
Probab=37.90 E-value=1.4e+02 Score=21.20 Aligned_cols=30 Identities=20% Similarity=0.159 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007407 501 KRTWVADVEECKKRGSIETARAIFSPACTV 530 (605)
Q Consensus 501 ~~~~~~~a~~~~~~g~~~~A~~i~~~al~~ 530 (605)
.-+|......+.+.|++++|..+|++..+.
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 345666667777777888888888777765
No 428
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=37.66 E-value=1.1e+02 Score=27.97 Aligned_cols=48 Identities=8% Similarity=0.017 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 007407 502 RTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYG 549 (605)
Q Consensus 502 ~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g 549 (605)
...+..++.....|++.-|..+...++..+|++..+....+..+.+.|
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 344555666677788888888888888888888877777777666554
No 429
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.64 E-value=5.3e+02 Score=30.54 Aligned_cols=28 Identities=14% Similarity=0.057 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007407 465 DTWMKEAEVADRAGSVVTCVAIITNTIE 492 (605)
Q Consensus 465 ~~wl~~A~~~e~~g~~~~A~~i~~~al~ 492 (605)
+...+||..+...|+++.|...|-++|.
T Consensus 369 ~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~ 396 (933)
T KOG2114|consen 369 EIHRKYGDYLYGKGDFDEATDQYIETIG 396 (933)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHcc
Confidence 3445555555555555555555555554
No 430
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=36.69 E-value=3.8e+02 Score=28.40 Aligned_cols=43 Identities=9% Similarity=0.091 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007407 480 VVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFS 525 (605)
Q Consensus 480 ~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~ 525 (605)
.-.|..+++.++...|. +..+.+.++.+|...|-...|..+|.
T Consensus 199 l~~Ai~lLE~~l~~s~~---n~~~~LlLvrlY~~LG~~~~A~~~~~ 241 (365)
T PF09797_consen 199 LLQAIALLEHALKKSPH---NYQLKLLLVRLYSLLGAGSLALEHYE 241 (365)
T ss_pred HHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34455566666666665 55555555566666666666666554
No 431
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=35.95 E-value=4.5e+02 Score=26.12 Aligned_cols=29 Identities=24% Similarity=0.232 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhCC
Q 007407 288 WIQAARLEELANEEAAARKLITKGCNMCP 316 (605)
Q Consensus 288 wia~Arle~~~g~~~~Ar~ll~~~l~~~P 316 (605)
.+..|++.+..|+++.....+.+.+..+|
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~ 32 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNP 32 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCC
Confidence 56789999999999999999999998865
No 432
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=35.47 E-value=1.1e+02 Score=32.38 Aligned_cols=45 Identities=13% Similarity=0.030 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007407 517 IETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKA 561 (605)
Q Consensus 517 ~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekA 561 (605)
+-+|..+++.++...|.+..+-+.+..+|...|-...|...|...
T Consensus 199 l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 199 LLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 457899999999999999999999999999999999999998754
No 433
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=34.10 E-value=2e+02 Score=23.02 Aligned_cols=33 Identities=24% Similarity=0.228 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 007407 267 ILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNM 314 (605)
Q Consensus 267 ~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~ 314 (605)
+.+|..++++++. ....|+++.|..++.+||+.
T Consensus 3 l~~Ai~lv~~Av~---------------~D~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 3 LEKAIALVVQAVK---------------KDQRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHHHHHHHHHHHH---------------HHHhccHHHHHHHHHHHHHH
Confidence 4456666666633 34568889999999888875
No 434
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=33.77 E-value=4.3e+02 Score=26.34 Aligned_cols=51 Identities=10% Similarity=0.122 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHhccCccc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007407 441 TSMVGKIIERGIRALQGEEVV-IDRDTWMKEAEVADRAGSVVTCVAIITNTI 491 (605)
Q Consensus 441 ~~~a~~i~~~al~~~p~~~~~-~~~~~wl~~A~~~e~~g~~~~A~~i~~~al 491 (605)
...++.++.+|+..+...+.. ....+-...|..+...|+++.|..+++.+.
T Consensus 154 s~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~ 205 (247)
T PF11817_consen 154 SKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAA 205 (247)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 445666666666665443211 112223344555555555555555555553
No 435
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=33.25 E-value=5e+02 Score=32.21 Aligned_cols=136 Identities=13% Similarity=0.056 Sum_probs=92.8
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Q 007407 463 DRDTWMKEAEVADRAGSVVTCVAIITNTIEI-----GVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTV------- 530 (605)
Q Consensus 463 ~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~-----~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~------- 530 (605)
....+...|..+...|..+.|...-.++.-+ +-+.+.....+...+.++...++...|...+.+++..
T Consensus 972 ~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge 1051 (1236)
T KOG1839|consen 972 VASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGE 1051 (1236)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCC
Confidence 3456677788888888888777655444322 1222335666777777788888888888888888765
Q ss_pred -cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007407 531 -FLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYC-----PQA---EVLWLMGAKEKWLAGDVPATRDILQEAYAA 598 (605)
Q Consensus 531 -~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~-----P~~---~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~ 598 (605)
.|.-..+...+..++...+.++.|..+++.|+..+ |+. ...+..++......+++..|......++.+
T Consensus 1052 ~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1052 DHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred CCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 34555666677777777789999999999999864 222 334555566666677777777776666544
No 436
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.81 E-value=1.2e+02 Score=35.81 Aligned_cols=18 Identities=11% Similarity=-0.025 Sum_probs=13.4
Q ss_pred HcCChHHHHHHHHHHHHH
Q 007407 581 LAGDVPATRDILQEAYAA 598 (605)
Q Consensus 581 ~~gd~~~Ar~il~kAl~~ 598 (605)
.+|.-++|.++.+..-..
T Consensus 765 ~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 765 AHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred hcCcHHHHHHHHHhhccc
Confidence 378888888888877653
No 437
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=32.16 E-value=5e+02 Score=25.85 Aligned_cols=93 Identities=15% Similarity=0.143 Sum_probs=51.3
Q ss_pred HcCCHHHHHHHHHHHHHhCCCchhh---------HHHHHHHHHHHHHcCCHH-HH-HHHHHHHHHh--cCCCH--HHHHH
Q 007407 476 RAGSVVTCVAIITNTIEIGVDEEDK---------KRTWVADVEECKKRGSIE-TA-RAIFSPACTV--FLTKK--NIWLK 540 (605)
Q Consensus 476 ~~g~~~~A~~i~~~al~~~p~~~~~---------~~~~~~~a~~~~~~g~~~-~A-~~i~~~al~~--~P~~~--~~w~~ 540 (605)
..|+++.|..+...+|..+-.-|++ .+....++......|..- -. ...+..+... .|+.. .++..
T Consensus 95 D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~K~ 174 (230)
T PHA02537 95 DIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLYKA 174 (230)
T ss_pred eccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 4567778888888887765332221 122233344444444321 11 1122222221 25543 44555
Q ss_pred HHHHHH---------HcCCHHHHHHHHHHHHHhCCCC
Q 007407 541 AAQLEK---------SYGCRESLIALLRKAVTYCPQA 568 (605)
Q Consensus 541 la~l~~---------~~g~~e~A~~~lekAl~~~P~~ 568 (605)
.|.++. ..++...|+.+|++|+.++|+.
T Consensus 175 ~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 175 AGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 566663 3457889999999999999875
No 438
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=31.01 E-value=5.7e+02 Score=25.78 Aligned_cols=144 Identities=13% Similarity=0.088 Sum_probs=68.9
Q ss_pred HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhC-CC--chhhHHHHHHHHHHHH
Q 007407 437 ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGS-VVTCVAIITNTIEIG-VD--EEDKKRTWVADVEECK 512 (605)
Q Consensus 437 ~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~-~~~A~~i~~~al~~~-p~--~~~~~~~~~~~a~~~~ 512 (605)
+.|+..-+..+..-.++.+...+.+.+.+.-...++.....+. ..+...+++.++++. .. ...++.++...|..+.
T Consensus 22 ~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~ 101 (260)
T PF04190_consen 22 KHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLW 101 (260)
T ss_dssp HTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHH
T ss_pred HCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHH
Confidence 4555554544444444444433333333322333344443332 224556677777664 11 0125677777888888
Q ss_pred HcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCChHHHHHH
Q 007407 513 KRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKW-LAGDVPATRDI 591 (605)
Q Consensus 513 ~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~-~~gd~~~Ar~i 591 (605)
+.+++..|+..|-.. ++.+..... .-++.-.....|....+++.-|.+-+ ..+++..|...
T Consensus 102 ~e~~~~~A~~Hfl~~-----~~~~~~~~~-------------~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~ 163 (260)
T PF04190_consen 102 KEGNYYEAERHFLLG-----TDPSAFAYV-------------MLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANEL 163 (260)
T ss_dssp HTT-HHHHHHHHHTS------HHHHHHHH-------------HHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHH
T ss_pred hhccHHHHHHHHHhc-----CChhHHHHH-------------HHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHH
Confidence 888887777665322 111111110 00111112234555666666666544 48889999888
Q ss_pred HHHHHHH
Q 007407 592 LQEAYAA 598 (605)
Q Consensus 592 l~kAl~~ 598 (605)
+..-.+.
T Consensus 164 ~~~f~~~ 170 (260)
T PF04190_consen 164 FDTFTSK 170 (260)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776665
No 439
>PRK14700 recombination factor protein RarA; Provisional
Probab=30.94 E-value=6.2e+02 Score=26.25 Aligned_cols=47 Identities=15% Similarity=0.135 Sum_probs=24.7
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Q 007407 531 FLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTY--CPQAEVLWLMGAK 577 (605)
Q Consensus 531 ~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~--~P~~~~l~l~~a~ 577 (605)
+|+-..+-.+..+.....|.+|.-+-+.+-++-. .|++-.++..+.+
T Consensus 178 dP~al~~a~aa~~A~~~iG~PEa~i~La~aviyLA~aPKSNs~y~A~~~ 226 (300)
T PRK14700 178 DPQALRVAMDAWNAYEKLGMPEGRLVLAQAAIYLAVAPKSNACYKALAQ 226 (300)
T ss_pred CHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHcCCCchHHHHHHHH
Confidence 3444444555555666667665444444444433 4766665555444
No 440
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=30.86 E-value=6.9e+02 Score=26.75 Aligned_cols=51 Identities=14% Similarity=0.198 Sum_probs=35.9
Q ss_pred HhhcHHHHHHHHHHHHHhCCCCHH--HHHHHHHH--H-HcCCHHHHHHHHHHHHHH
Q 007407 404 RLETYGVARSVLNKARKKLPKERA--IWIAAAKL--E-ANGNTSMVGKIIERGIRA 454 (605)
Q Consensus 404 ~le~~e~A~~vL~~al~~~p~~~~--iwi~~a~L--e-~~g~~~~a~~i~~~al~~ 454 (605)
+-++|..|..+|+.+....|.+.. .+..++.. . ..-++.+|...++..+..
T Consensus 143 n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred hcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445789999999998887666554 34444432 2 456788999988887765
No 441
>PRK12798 chemotaxis protein; Reviewed
Probab=29.56 E-value=7.7e+02 Score=26.85 Aligned_cols=184 Identities=13% Similarity=0.064 Sum_probs=111.3
Q ss_pred cHHHHHHHHHHHHH-hCCCCHHHHHHHHH--HHHcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHH
Q 007407 407 TYGVARSVLNKARK-KLPKERAIWIAAAK--LEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTC 483 (605)
Q Consensus 407 ~~e~A~~vL~~al~-~~p~~~~iwi~~a~--Le~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A 483 (605)
+.++|.+.|..+-- ..|...-.++.+++ +....++.+|.++|+.+-=..|..-+ .-.........+...|..++.
T Consensus 127 r~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLv--EEAALRRsi~la~~~g~~~rf 204 (421)
T PRK12798 127 RGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLV--EEAALRRSLFIAAQLGDADKF 204 (421)
T ss_pred CHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHH--HHHHHHHhhHHHHhcCcHHHH
Confidence 55667666665432 23444445666554 43556789999999988655554311 222333344455678888888
Q ss_pred HHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007407 484 VAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVF-LT-KKNIWLKAAQLEKSYGCRESLIALLRKA 561 (605)
Q Consensus 484 ~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~-P~-~~~~w~~la~l~~~~g~~e~A~~~lekA 561 (605)
..+....+.-+..++--.++|-..+..+.+..+- .-...+..++... |. ...+|+..+..-...|+.+-|.-.-++|
T Consensus 205 ~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~-~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A 283 (421)
T PRK12798 205 EALARNYLRRFRHSPYASQFAQRFVDLVVRLDDE-IRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERA 283 (421)
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHhcccc-ccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 8777777766655343445555555555555422 2233466666653 43 5688888899999999999999999999
Q ss_pred HHhCCCC---HHHHHHHHH-HHHHcCChHHHHHHHH
Q 007407 562 VTYCPQA---EVLWLMGAK-EKWLAGDVPATRDILQ 593 (605)
Q Consensus 562 l~~~P~~---~~l~l~~a~-~~~~~gd~~~Ar~il~ 593 (605)
+.+.... ......|.- ...-..++++|...|.
T Consensus 284 ~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~ 319 (421)
T PRK12798 284 LKLADPDSADAARARLYRGAALVASDDAESALEELS 319 (421)
T ss_pred HHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHh
Confidence 9986321 222222222 2223556666666554
No 442
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=29.21 E-value=1.4e+02 Score=18.82 Aligned_cols=25 Identities=8% Similarity=0.073 Sum_probs=12.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 007407 538 WLKAAQLEKSYGCRESLIALLRKAV 562 (605)
Q Consensus 538 w~~la~l~~~~g~~e~A~~~lekAl 562 (605)
|..+...+.+.|+++.|..+|+...
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~ 28 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMK 28 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4444445555555555555555443
No 443
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=28.95 E-value=1.6e+02 Score=32.16 Aligned_cols=24 Identities=13% Similarity=0.019 Sum_probs=18.5
Q ss_pred HHHcCCHHHHHHHHHHHHHHhccC
Q 007407 435 LEANGNTSMVGKIIERGIRALQGE 458 (605)
Q Consensus 435 Le~~g~~~~a~~i~~~al~~~p~~ 458 (605)
+-..|++.+|...|+..|...|-.
T Consensus 214 ~~t~gKF~eA~~~Fr~iL~~i~l~ 237 (422)
T PF06957_consen 214 LFTAGKFEEAIEIFRSILHSIPLL 237 (422)
T ss_dssp HHHTT-HHHHHHHHHHHHHHHHC-
T ss_pred HHhcCCHHHHHHHHHHHHHHhhee
Confidence 337889999999999999987754
No 444
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=28.76 E-value=3.1e+02 Score=22.13 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=9.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 007407 507 DVEECKKRGSIETARAIFSPA 527 (605)
Q Consensus 507 ~a~~~~~~g~~~~A~~i~~~a 527 (605)
.|-.+-..|++.+|+.+|+.+
T Consensus 12 ~AVe~D~~gr~~eAi~~Y~~a 32 (75)
T cd02682 12 NAVKAEKEGNAEDAITNYKKA 32 (75)
T ss_pred HHHHHHhcCCHHHHHHHHHHH
Confidence 333444455555555555443
No 445
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=28.39 E-value=6.8e+02 Score=25.91 Aligned_cols=19 Identities=16% Similarity=0.322 Sum_probs=8.8
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 007407 473 VADRAGSVVTCVAIITNTI 491 (605)
Q Consensus 473 ~~e~~g~~~~A~~i~~~al 491 (605)
.+.+.|.+..|.+.+..++
T Consensus 134 l~y~~~~YsdalalIn~ll 152 (421)
T COG5159 134 LLYKTGKYSDALALINPLL 152 (421)
T ss_pred HHHhcccHHHHHHHHHHHH
Confidence 3344455555554444433
No 446
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=28.21 E-value=5e+02 Score=25.02 Aligned_cols=70 Identities=10% Similarity=0.102 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHhCCCchh-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 007407 480 VVTCVAIITNTIEIGVDEED-----KKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGC 550 (605)
Q Consensus 480 ~~~A~~i~~~al~~~p~~~~-----~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~ 550 (605)
.+.|..++..+-...+...+ ..-+-.+.+..|++.|.+.+|..++++... +|++...-..|..+-.+...
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~ 159 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDP 159 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHcccc
Confidence 45666666665544332100 112233445677788888888888888877 77776665555555544433
No 447
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=28.09 E-value=5e+02 Score=25.03 Aligned_cols=55 Identities=7% Similarity=0.005 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHhccCcc-cccHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 007407 441 TSMVGKIIERGIRALQGEEV-VIDRD--TWMKEAEVADRAGSVVTCVAIITNTIEIGVD 496 (605)
Q Consensus 441 ~~~a~~i~~~al~~~p~~~~-~~~~~--~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~ 496 (605)
.+.|..+++..-+..+.... ..... +-......|.+.|.++.|.+++++.++ +|+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~ 142 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPE 142 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCC
Confidence 45666666655444432111 01111 222344678889999999999999988 555
No 448
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=27.81 E-value=4.2e+02 Score=23.21 Aligned_cols=17 Identities=24% Similarity=0.239 Sum_probs=7.2
Q ss_pred HHHHHcCChHHHHHHHH
Q 007407 577 KEKWLAGDVPATRDILQ 593 (605)
Q Consensus 577 ~~~~~~gd~~~Ar~il~ 593 (605)
-..|+.|--+++...|.
T Consensus 77 L~a~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 77 LCAWKLGLASALESRLT 93 (116)
T ss_dssp HHHHHCT-HHHHHHHHH
T ss_pred HHHHhhccHHHHHHHHH
Confidence 33444554444444443
No 449
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=27.48 E-value=9.5e+02 Score=27.25 Aligned_cols=124 Identities=19% Similarity=0.217 Sum_probs=60.3
Q ss_pred cHHHHHHHHHHHHHhCCCCh-----HHHHHHHHHHHH------------hcCHHHHHHHHHHHHhhCCCCHHHHHHHHhh
Q 007407 266 DILKARKIVRAVTKNSPKKP-----LGWIQAARLEEL------------ANEEAAARKLITKGCNMCPKNEDVWLEACRL 328 (605)
Q Consensus 266 d~~kAr~ll~~al~~~P~~~-----~~wia~Arle~~------------~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L 328 (605)
+-+.++..+..+-...|+++ .+|..+.+++.. .|+...|...+++.|..-+....+-+...-+
T Consensus 273 ~qee~~~~~s~~~ek~~s~p~~~~fn~yk~a~KYLR~al~s~p~vlLl~~~~l~eal~~~e~~c~~~~~~lpi~~~~~ll 352 (547)
T PF14929_consen 273 PQEEYRESLSNYAEKFPSNPGRSIFNAYKYAVKYLRLALQSNPPVLLLIGGRLKEALNELEKFCISSTCALPIRLRAHLL 352 (547)
T ss_pred cHHHHHHHHhhccccccCccccchhHHHHHHHHHHHHHhcCCCCeEEeccccHHHHHHHHHHhccCCCccchHHHHHHHH
Confidence 33444444444445556666 666666666532 3778888888877766554444443332222
Q ss_pred cCch--hHHHHHHHHHhhCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHhC-CHHHHHHHHHHH---HHhCCCCHHHHHHH
Q 007407 329 ARPD--EAKSVVAKGVRQIPKSANKIRALRMALDEIPDSVRLWKALVEIS-SEEEARILLHRA---VECCPLDVELWLAL 402 (605)
Q Consensus 329 ~~~~--~Ak~~l~~al~~~P~s~~a~~vl~kAle~~P~~~~lw~~l~~le-~~e~A~~~l~rA---l~~~P~~~~lw~aL 402 (605)
+.-+ .+. + -..+|...+...|........++.+. ....+..+++-. +...| +..+|+.+
T Consensus 353 e~~d~~~~~-~-------------l~~~~e~~~~~~P~~~~~le~l~~~~~~~~~~~~Lle~i~~~l~~~~-s~~iwle~ 417 (547)
T PF14929_consen 353 EYFDQNNSS-V-------------LSSCLEDCLKKDPTMSYSLERLILLHQKDYSAEQLLEMIALHLDLVP-SHPIWLEF 417 (547)
T ss_pred HHhCcccHH-H-------------HHHHHHHHhcCCCcHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCC-CchHHHHH
Confidence 2222 111 1 12344555566666554444444333 233344444422 22232 45677766
Q ss_pred HH
Q 007407 403 VR 404 (605)
Q Consensus 403 a~ 404 (605)
+.
T Consensus 418 ~~ 419 (547)
T PF14929_consen 418 VS 419 (547)
T ss_pred HH
Confidence 53
No 450
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=27.39 E-value=2.1e+02 Score=28.51 Aligned_cols=61 Identities=8% Similarity=-0.050 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHH
Q 007407 483 CVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTV-FLTKKNIWLKAAQLEKS 547 (605)
Q Consensus 483 A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~-~P~~~~~w~~la~l~~~ 547 (605)
|+..|..|+.+.|. +...|.++|-++...|+.-.|.-.|-+++-. .|. +.+...+..+..+
T Consensus 1 A~~~Y~~A~~l~P~---~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf-~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPS---NGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPF-PSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TT---BSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCC---CCCcccchhhhhccccchHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHH
Confidence 34556666666666 5666666666666666666666666665543 233 4555555544444
No 451
>TIGR03274 methan_mark_7 putative methanogenesis marker protein 7. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=26.76 E-value=34 Score=34.48 Aligned_cols=24 Identities=25% Similarity=0.630 Sum_probs=16.9
Q ss_pred cccCCCCCCCCCCCCCCccCCCCC
Q 007407 4 LGSKGRLDFLNSKPPANYIAGAGR 27 (605)
Q Consensus 4 ~~~~~~~~fl~~~~p~~yv~g~gr 27 (605)
...+++..--+.+++.+||.|+||
T Consensus 160 ~~~P~~i~~~~~p~~~~YVgglGR 183 (302)
T TIGR03274 160 TGGPEKIDLMDIPGADAYVGGLGR 183 (302)
T ss_pred eCCCcccccccCCchhhcccccch
Confidence 334444444567888999999998
No 452
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=26.54 E-value=3e+02 Score=21.23 Aligned_cols=34 Identities=15% Similarity=0.085 Sum_probs=22.2
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcCc
Q 007407 291 AARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLARP 331 (605)
Q Consensus 291 ~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~~ 331 (605)
.|.-+...|+++.|..++.+|++. ++..++.+..
T Consensus 11 ~Av~~D~~g~~~~A~~~Y~~ai~~-------l~~~~~~~~~ 44 (69)
T PF04212_consen 11 KAVEADEAGNYEEALELYKEAIEY-------LMQALKSESN 44 (69)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHHHH-------HHHHHHHSTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH-------HHHHhccCCC
Confidence 344455678888888888888764 4555555543
No 453
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=26.36 E-value=2.8e+02 Score=22.36 Aligned_cols=34 Identities=9% Similarity=0.118 Sum_probs=22.1
Q ss_pred HHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcCchhHH
Q 007407 295 EELANEEAAARKLITKGCNMCPKNEDVWLEACRLARPDEAK 335 (605)
Q Consensus 295 e~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~~~~Ak 335 (605)
+...|+++.|..++.+|++. |+..++.+.....+
T Consensus 16 ~D~~g~y~eAl~~Y~~aie~-------l~~~lk~e~d~~~k 49 (77)
T cd02683 16 LDQEGRFQEALVCYQEGIDL-------LMQVLKGTKDEAKK 49 (77)
T ss_pred HHHhccHHHHHHHHHHHHHH-------HHHHHhhCCCHHHH
Confidence 45678888888888888754 55555555443333
No 454
>PF06787 UPF0254: Uncharacterised protein family (UPF0254); InterPro: IPR009625 This is a group of proteins of unknown function.
Probab=26.19 E-value=26 Score=32.17 Aligned_cols=13 Identities=54% Similarity=0.762 Sum_probs=11.2
Q ss_pred cCCCCCCcccccc
Q 007407 22 IAGAGRGASSFTT 34 (605)
Q Consensus 22 v~g~grga~gf~t 34 (605)
-||+||||.--.|
T Consensus 106 TAGiGrGaI~I~t 118 (160)
T PF06787_consen 106 TAGIGRGAICIVT 118 (160)
T ss_pred ccccCCceEEEEe
Confidence 3999999998777
No 455
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=25.90 E-value=8.2e+02 Score=25.97 Aligned_cols=152 Identities=17% Similarity=0.142 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHH--Hhhc----------------------------HHHHHHHHHHHHHhC-CCCHH
Q 007407 379 EEARILLHRAVECCPLDVELWLALV--RLET----------------------------YGVARSVLNKARKKL-PKERA 427 (605)
Q Consensus 379 e~A~~~l~rAl~~~P~~~~lw~aLa--~le~----------------------------~e~A~~vL~~al~~~-p~~~~ 427 (605)
++|+.+=.-.+...|..+++.-.++ .+.+ ..++...++++.... |.-..
T Consensus 213 ~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~pGPYq 292 (415)
T COG4941 213 DEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRRPGPYQ 292 (415)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCCCChHH
Confidence 6777777777778888887654333 2211 346777888887654 33323
Q ss_pred HHHHHHHHH------HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhH
Q 007407 428 IWIAAAKLE------ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKK 501 (605)
Q Consensus 428 iwi~~a~Le------~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~ 501 (605)
+--..+.+. ..-+...+..+|+-.....|+.-+..++.+-+. +..| +..+.++++..... |.-....
T Consensus 293 lqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSPvV~LNRAVAla-----~~~G-p~agLa~ve~L~~~-~~L~gy~ 365 (415)
T COG4941 293 LQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSPVVTLNRAVALA-----MREG-PAAGLAMVEALLAR-PRLDGYH 365 (415)
T ss_pred HHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCCeEeehHHHHHH-----Hhhh-HHhHHHHHHHhhcc-ccccccc
Confidence 222222221 122567777788777777666544455544332 2234 67777887776553 2212255
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH
Q 007407 502 RTWVADVEECKKRGSIETARAIFSPACTVFLTKKNI 537 (605)
Q Consensus 502 ~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~ 537 (605)
..|-..+.++.+.|..++|+..|.+++.+-++...-
T Consensus 366 ~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer 401 (415)
T COG4941 366 LYHAARADLLARLGRVEEARAAYDRAIALARNAAER 401 (415)
T ss_pred ccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHH
Confidence 567788999999999999999999999998876544
No 456
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=25.89 E-value=1.2e+02 Score=24.41 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=8.3
Q ss_pred cCCHHHHHHHHHHHHHh
Q 007407 548 YGCRESLIALLRKAVTY 564 (605)
Q Consensus 548 ~g~~e~A~~~lekAl~~ 564 (605)
.|++++|+.+|..||..
T Consensus 19 ~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 19 RGDAAAALSLYCSALQY 35 (75)
T ss_pred hccHHHHHHHHHHHHHH
Confidence 44555555555555443
No 457
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=25.79 E-value=3.7e+02 Score=27.93 Aligned_cols=62 Identities=10% Similarity=0.141 Sum_probs=35.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007407 469 KEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTV 530 (605)
Q Consensus 469 ~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~ 530 (605)
..|..+...|.++.|...++..+....+.-++....+..++++...|..+-|..+|+...+.
T Consensus 218 ~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~~ 279 (301)
T TIGR03362 218 EEARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQAGKAELAQQLYAALDQQ 279 (301)
T ss_pred HHHHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34555555666677766666654433332234444555666666777777777666665543
No 458
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=25.41 E-value=7e+02 Score=28.26 Aligned_cols=76 Identities=12% Similarity=0.030 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH---HHhCCCCHHHHHHHHHHHHH-cCChHHHHHH
Q 007407 516 SIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKA---VTYCPQAEVLWLMGAKEKWL-AGDVPATRDI 591 (605)
Q Consensus 516 ~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekA---l~~~P~~~~l~l~~a~~~~~-~gd~~~Ar~i 591 (605)
....-..+|+.+++..|........+..++.. ...+.++++-. +...| ++.+|+.++..+.+ .++++.-.+-
T Consensus 359 ~~~~l~~~~e~~~~~~P~~~~~le~l~~~~~~---~~~~~~Lle~i~~~l~~~~-s~~iwle~~~~~l~~~~~~~~~~e~ 434 (547)
T PF14929_consen 359 NSSVLSSCLEDCLKKDPTMSYSLERLILLHQK---DYSAEQLLEMIALHLDLVP-SHPIWLEFVSCFLKNPSRFEDKEED 434 (547)
T ss_pred cHHHHHHHHHHHhcCCCcHHHHHHHHHhhhhh---HHHHHHHHHHHHHHhhcCC-CchHHHHHHHHHHhccccccccHHH
Confidence 55666777888888888777666666555554 33444455422 33344 46778888887766 4555433333
Q ss_pred HHHH
Q 007407 592 LQEA 595 (605)
Q Consensus 592 l~kA 595 (605)
...+
T Consensus 435 ~~~~ 438 (547)
T PF14929_consen 435 HKSA 438 (547)
T ss_pred HHHH
Confidence 4333
No 459
>COG4016 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.19 E-value=30 Score=31.02 Aligned_cols=16 Identities=44% Similarity=0.545 Sum_probs=12.6
Q ss_pred CCccCCCCCCcccccc
Q 007407 19 ANYIAGAGRGASSFTT 34 (605)
Q Consensus 19 ~~yv~g~grga~gf~t 34 (605)
-|--|||||||.---|
T Consensus 104 IGtTAGiGRGaIci~~ 119 (165)
T COG4016 104 IGTTAGIGRGAICILT 119 (165)
T ss_pred cccccccCCceEEEec
Confidence 4667999999987655
No 460
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=25.17 E-value=3.6e+02 Score=21.82 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=14.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007407 467 WMKEAEVADRAGSVVTCVAIITNTIE 492 (605)
Q Consensus 467 wl~~A~~~e~~g~~~~A~~i~~~al~ 492 (605)
+...|..|++.|.+.+|...|+.+++
T Consensus 9 ~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 9 YAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34445555566666666555555544
No 461
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=25.05 E-value=3.3e+02 Score=29.48 Aligned_cols=91 Identities=14% Similarity=0.077 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCC----HH
Q 007407 502 RTWVADVEECKKRGSIETARAIFSPACTVFLT---KKNIWLKAAQLEKSYGCRESLIALLRKAVTY----CPQA----EV 570 (605)
Q Consensus 502 ~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~---~~~~w~~la~l~~~~g~~e~A~~~lekAl~~----~P~~----~~ 570 (605)
..+..++..|...|+++.|...|.++-...-+ -...|..+..+-.-.|++-....+-.+|.+. +... +.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Q ss_pred HHHHHHHHHHHcCChHHHHHHH
Q 007407 571 LWLMGAKEKWLAGDVPATRDIL 592 (605)
Q Consensus 571 l~l~~a~~~~~~gd~~~Ar~il 592 (605)
+....|......+++..|.+.+
T Consensus 231 l~C~agLa~L~lkkyk~aa~~f 252 (466)
T KOG0686|consen 231 LKCAAGLANLLLKKYKSAAKYF 252 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
No 462
>PRK15338 type III secretion system regulator InvE; Provisional
Probab=24.85 E-value=7.8e+02 Score=26.34 Aligned_cols=116 Identities=9% Similarity=0.006 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCchhhHHHHH-HHHHHHHHcCC
Q 007407 443 MVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEI-----GVDEEDKKRTWV-ADVEECKKRGS 516 (605)
Q Consensus 443 ~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~-----~p~~~~~~~~~~-~~a~~~~~~g~ 516 (605)
....++..+.+.+|+ ..+.|+.+.+...+..-...-+..++.++.. ++. .-...+-. ..|..+...++
T Consensus 107 ~~~~ll~~arq~FpD-----~SDl~~aLreLl~r~kL~~~~~~~le~al~~Le~e~~~K-~ikAGINvAL~Ak~Fs~~~~ 180 (372)
T PRK15338 107 ALEEFLRQARKLFPD-----PSDLVLVLRELLRRKQLEEIVRKKLESLLKHVEEETDPK-TLKAGINCALKARLFGKALS 180 (372)
T ss_pred CHHHHHHHHHHhCCC-----HHHHHHHHHHHHhCccCCHHHHHHHHHHHHHHHhhcCcH-HHHhcCcHHHHHHHHHhhcC
Confidence 355777788887764 7788888887776554444455666666653 111 00111111 12444555555
Q ss_pred H--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 007407 517 I--ETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYC 565 (605)
Q Consensus 517 ~--~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~ 565 (605)
. ..-|.+|+..+..+-.-..+|..|..-+ -..+.+.+...+.+||..+
T Consensus 181 lsa~~LR~lYR~Fl~~d~~~~~iY~~Wieey-g~~~R~~il~Fl~~AL~~D 230 (372)
T PRK15338 181 LKPGLLRASYRQFLQSESHEVEIYSDWIASY-GYQRRLVVLDFIEGSLLTD 230 (372)
T ss_pred CCHHHHHHHHHHHHhccCcHHHHHHHHHHHh-CccHHHHHHHHHHHHHHhH
Confidence 5 7778889988888776667777775554 4456788888888888764
No 463
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=24.30 E-value=1.5e+02 Score=26.35 Aligned_cols=30 Identities=27% Similarity=0.148 Sum_probs=19.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 007407 505 VADVEECKKRGSIETARAIFSPACTVFLTK 534 (605)
Q Consensus 505 ~~~a~~~~~~g~~~~A~~i~~~al~~~P~~ 534 (605)
+..++.+...|++++|...|-+|+.+.|.-
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~qP 96 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQP 96 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSSH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCH
Confidence 455666666777777777777777766544
No 464
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=24.11 E-value=6.2e+02 Score=27.50 Aligned_cols=96 Identities=21% Similarity=0.164 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHH-
Q 007407 500 KKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKN-IWLKAAQLEKSYGCRESLIALLRKAVTYCPQ---AEVLWLM- 574 (605)
Q Consensus 500 ~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~-~w~~la~l~~~~g~~e~A~~~lekAl~~~P~---~~~l~l~- 574 (605)
...+++..+-.|...++|..|+.+|..+|-..-.... ....-.+...-.+..|....++-=++..||. ....+.+
T Consensus 163 ~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~~lde~i~~~lk 242 (404)
T PF10255_consen 163 HISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQRSYQYDQINKKNEQMYALLAICLSLCPQRLDESISSQLK 242 (404)
T ss_pred heehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhhHHHhHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 4556667777888889999999999998865433321 1111122222334556677777777777884 2333333
Q ss_pred --HHH--HHHHcCChHHHHHHHHHH
Q 007407 575 --GAK--EKWLAGDVPATRDILQEA 595 (605)
Q Consensus 575 --~a~--~~~~~gd~~~Ar~il~kA 595 (605)
|+. ..++.|+.+.=+++|..|
T Consensus 243 eky~ek~~kmq~gd~~~f~elF~~a 267 (404)
T PF10255_consen 243 EKYGEKMEKMQRGDEEAFEELFSFA 267 (404)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHhh
Confidence 333 235577766666666555
No 465
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=23.46 E-value=9.6e+02 Score=25.93 Aligned_cols=31 Identities=13% Similarity=0.148 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHH-HcCChHHHHHHHHHHHHHC
Q 007407 569 EVLWLMGAKEKW-LAGDVPATRDILQEAYAAI 599 (605)
Q Consensus 569 ~~l~l~~a~~~~-~~gd~~~Ar~il~kAl~~~ 599 (605)
..+|+.+|-..| +.|....|..+|.+|+...
T Consensus 369 ~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY 400 (414)
T PF12739_consen 369 YAFHMVLAGHRYSKAGQKKHALRCYKQALQVY 400 (414)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 356777777666 4899999999999988764
No 466
>PF08780 NTase_sub_bind: Nucleotidyltransferase substrate binding protein like; InterPro: IPR010235 The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins []. It forms a complex with HI0073 (P43933 from SWISSPROT), encoded by the adjacent gene, which contains a nucleotidyltransferase nucleotide binding domain (IPR002934 from INTERPRO). Double- and single-stranded DNA binding assays showed no evidence of DNA binding to HI0074 or to HI0073/HI0074 complex despite the suggestive shape of the putative binding cleft formed by the HI0074 dimer []. ; PDB: 1WWP_A 1JOG_A 1WTY_C 2YWA_B.
Probab=23.30 E-value=2.4e+02 Score=24.96 Aligned_cols=103 Identities=17% Similarity=0.068 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhh--CCCCHHHHHHHHhhcCc--hhHHHHHHHHHhhCCCc--HHHHHHHHHHHHhC-CCcHHHHHHH
Q 007407 300 EEAAARKLITKGCNM--CPKNEDVWLEACRLARP--DEAKSVVAKGVRQIPKS--ANKIRALRMALDEI-PDSVRLWKAL 372 (605)
Q Consensus 300 ~~~~Ar~ll~~~l~~--~P~~~~lwle~a~L~~~--~~Ak~~l~~al~~~P~s--~~a~~vl~kAle~~-P~~~~lw~~l 372 (605)
++.+|..-+++++.. .|.++-+.-..++-..- +.+-.++.+.|...... ...+.+++.|.+.- ..+.+.|..+
T Consensus 5 ~~~kAl~~L~ea~~~~~~~~~~~~~dg~IqrFE~t~ElaWK~lK~~L~~~G~~~~~spr~~~r~A~~~glI~d~e~Wl~m 84 (124)
T PF08780_consen 5 NFKKALSRLEEALEKYEDPLSELERDGVIQRFEFTFELAWKTLKDYLEYEGISECNSPRDVFREAFKAGLIDDGEIWLDM 84 (124)
T ss_dssp HHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSSCCTSHHHHHHHHHHTTSSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHcCCCCCHHHHHHH
Q ss_pred -------HHhCCHHHHHHHHHHHH-HhCCCCHHHHHHH
Q 007407 373 -------VEISSEEEARILLHRAV-ECCPLDVELWLAL 402 (605)
Q Consensus 373 -------~~le~~e~A~~~l~rAl-~~~P~~~~lw~aL 402 (605)
...++.+.|..+|+++. ...|.-..+.-.+
T Consensus 85 ~~~RN~tsHtYde~~a~~i~~~I~~~y~~~~~~L~~~l 122 (124)
T PF08780_consen 85 LEDRNLTSHTYDEETAEEIYERIPDDYLPLFKELLEKL 122 (124)
T ss_dssp HHHHHHGGGTTSHHHHHHHHHTHH-HHHHHHHHHHHHC
T ss_pred HHHhccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
No 467
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.30 E-value=1e+02 Score=36.25 Aligned_cols=103 Identities=20% Similarity=0.222 Sum_probs=67.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCH
Q 007407 472 EVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCR 551 (605)
Q Consensus 472 ~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~ 551 (605)
..+...|+.+.|.+..++ ++ ....|-.+++....+|+..-|..+|++. .-|..|..+|.-.|+.
T Consensus 651 ~LaLe~gnle~ale~akk---ld-----d~d~w~rLge~Al~qgn~~IaEm~yQ~~--------knfekLsfLYliTgn~ 714 (1202)
T KOG0292|consen 651 ELALECGNLEVALEAAKK---LD-----DKDVWERLGEEALRQGNHQIAEMCYQRT--------KNFEKLSFLYLITGNL 714 (1202)
T ss_pred eeehhcCCHHHHHHHHHh---cC-----cHHHHHHHHHHHHHhcchHHHHHHHHHh--------hhhhheeEEEEEeCCH
Confidence 345567778777654433 22 6778888888888888888888888765 3355666677778888
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 007407 552 ESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEA 595 (605)
Q Consensus 552 e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kA 595 (605)
++..++-+.|-..+ +....++-+ + =.|++++=.+||..+
T Consensus 715 eKL~Km~~iae~r~--D~~~~~qna-l--Yl~dv~ervkIl~n~ 753 (1202)
T KOG0292|consen 715 EKLSKMMKIAEIRN--DATGQFQNA-L--YLGDVKERVKILENG 753 (1202)
T ss_pred HHHHHHHHHHHhhh--hhHHHHHHH-H--HhccHHHHHHHHHhc
Confidence 88888777664332 111111111 1 268888888888764
No 468
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=22.22 E-value=4.7e+02 Score=25.29 Aligned_cols=83 Identities=11% Similarity=0.046 Sum_probs=44.0
Q ss_pred cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----cC
Q 007407 514 RGSIETARAIFSPACTVFLTKKNIWLKAAQLEKS-----YGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWL-----AG 583 (605)
Q Consensus 514 ~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~-----~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~-----~g 583 (605)
+.+|+.|..+|+.-..-+... ..-+.++..+.. .+++..|...|+.|... +.+..-...+.++|. .+
T Consensus 48 ~knF~~A~kv~K~nCden~y~-kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~--n~~~aC~~~gLl~~~g~~~r~~ 124 (248)
T KOG4014|consen 48 QKNFQAAVKVFKKNCDENSYP-KSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA--NIPQACRYLGLLHWNGEKDRKA 124 (248)
T ss_pred HHHHHHHHHHHHhcccccCCc-HHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc--CCHHHHhhhhhhhccCcCCccC
Confidence 445666666666555443322 333344443331 23566677777766653 345555555655553 12
Q ss_pred C--hHHHHHHHHHHHHHC
Q 007407 584 D--VPATRDILQEAYAAI 599 (605)
Q Consensus 584 d--~~~Ar~il~kAl~~~ 599 (605)
+ .++|+..+.+|-..+
T Consensus 125 dpd~~Ka~~y~traCdl~ 142 (248)
T KOG4014|consen 125 DPDSEKAERYMTRACDLE 142 (248)
T ss_pred CCCcHHHHHHHHHhccCC
Confidence 2 566777777765543
No 469
>COG1659 Uncharacterized protein, linocin/CFP29 homolog [Function unknown]
Probab=22.09 E-value=36 Score=33.04 Aligned_cols=17 Identities=24% Similarity=0.511 Sum_probs=15.7
Q ss_pred hhhccCCCCHHHhccCC
Q 007407 145 LKGKLSTVKAKEWERIP 161 (605)
Q Consensus 145 lkr~l~~v~~~~w~~~p 161 (605)
|||+++-+|++||+-|-
T Consensus 4 L~Rd~APLTe~~W~eID 20 (267)
T COG1659 4 LYRDLAPLTEAAWAEID 20 (267)
T ss_pred hhhccccccHHHHHHHH
Confidence 89999999999999883
No 470
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=21.97 E-value=5.5e+02 Score=22.55 Aligned_cols=27 Identities=19% Similarity=0.329 Sum_probs=13.6
Q ss_pred CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 007407 515 GSIETARAIFSPACTVFLTKKNIWLKAAQLEK 546 (605)
Q Consensus 515 g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~ 546 (605)
++++.|..++.+ ++++.+|..++..+.
T Consensus 110 ~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 110 GNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred cCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 445555554443 345556665554443
No 471
>PHA02334 hypothetical protein
Probab=21.93 E-value=2.3e+02 Score=21.54 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=12.0
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHH
Q 007407 352 IRALRMALDEIPDSVRLWKALVE 374 (605)
Q Consensus 352 ~~vl~kAle~~P~~~~lw~~l~~ 374 (605)
.++..+++..+|++.++-..+++
T Consensus 10 ~Kiv~~av~kiPd~~elgeklie 32 (64)
T PHA02334 10 SKIVSDAVNKIPDDEELGEKLIE 32 (64)
T ss_pred HHHHHHHHhcCCChHHHHHHHHH
Confidence 34455555555655555444444
No 472
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=21.84 E-value=9.2e+02 Score=25.15 Aligned_cols=228 Identities=10% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHH
Q 007407 351 KIRALRMALDEIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALVRLETYGVARSVLNKARKKLPKERAIWI 430 (605)
Q Consensus 351 a~~vl~kAle~~P~~~~lw~~l~~le~~e~A~~~l~rAl~~~P~~~~lw~aLa~le~~e~A~~vL~~al~~~p~~~~iwi 430 (605)
...+-.+.++.-|.-..=-..|..+++++.| |.+|++ ..++++-+.....-.-.-...-|-+.+...|....++.
T Consensus 15 R~~LA~~LL~~Ep~~~~qVplLL~m~e~e~A---L~kAi~--SgD~DLi~~vLl~L~~~l~~s~f~~il~~~p~a~~l~~ 89 (319)
T PF04840_consen 15 RPKLATKLLELEPRASKQVPLLLKMGEDELA---LNKAIE--SGDTDLIYLVLLHLKRKLSLSQFFKILNQNPVASNLYK 89 (319)
T ss_pred hHHHHHHHHHcCCChHHHHHHHhcCCchHHH---HHHHHH--cCCccHHHHHHHHHHHhCCHHHHHHHHHhCcchHHHHH
Q ss_pred HHHH---------HH-HcCC-HHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Q 007407 431 AAAK---------LE-ANGN-TSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEI------ 493 (605)
Q Consensus 431 ~~a~---------Le-~~g~-~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~------ 493 (605)
.+++ ++ +.++ .+.+.-.+..++.. ................+....+..-...+++.-+.+
T Consensus 90 ~~~r~~~~~~L~~~y~q~d~~~~~a~~~l~~~~~~---~~~~~~~~~L~~a~~~y~~~k~~~f~~~~~e~q~~Ll~~Q~~ 166 (319)
T PF04840_consen 90 KYCREQDRELLKDFYYQEDRFQELANLHLQEALSQ---KDVEEKISFLKQAQKLYSKSKNDAFEAKLIEEQIKLLEYQKE 166 (319)
T ss_pred HHHHhccHHHHHHHHHhcchHHHHHHHHHHHHHhC---CChHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Q ss_pred ---CCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 007407 494 ---GVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEV 570 (605)
Q Consensus 494 ---~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~ 570 (605)
.....-.......-...++..|+...|..+ .+-.++ .+..+|......+...+++++..+... .-++|.
T Consensus 167 Le~~~~~~f~~~Sl~~Ti~~li~~~~~k~A~kl-~k~Fkv--~dkrfw~lki~aLa~~~~w~eL~~fa~-----skKsPI 238 (319)
T PF04840_consen 167 LEEKYNTNFVGLSLNDTIRKLIEMGQEKQAEKL-KKEFKV--PDKRFWWLKIKALAENKDWDELEKFAK-----SKKSPI 238 (319)
T ss_pred HHHHhccchhcCCHHHHHHHHHHCCCHHHHHHH-HHHcCC--cHHHHHHHHHHHHHhcCCHHHHHHHHh-----CCCCCC
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHH
Q 007407 571 LWLMGAKEKWLAGDVPATRDILQE 594 (605)
Q Consensus 571 l~l~~a~~~~~~gd~~~Ar~il~k 594 (605)
.|.-....+.+.|+..+|..++.+
T Consensus 239 GyepFv~~~~~~~~~~eA~~yI~k 262 (319)
T PF04840_consen 239 GYEPFVEACLKYGNKKEASKYIPK 262 (319)
T ss_pred ChHHHHHHHHHCCCHHHHHHHHHh
No 473
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=21.71 E-value=2.3e+02 Score=20.20 Aligned_cols=32 Identities=13% Similarity=0.024 Sum_probs=26.0
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhcCHHHH
Q 007407 273 IVRAVTKNSPKKPLGWIQAARLEELANEEAAA 304 (605)
Q Consensus 273 ll~~al~~~P~~~~~wia~Arle~~~g~~~~A 304 (605)
.|..++-.+|.+...++.+|.+....|+...|
T Consensus 4 all~AI~~~P~ddt~RLvYADWL~e~gdp~ra 35 (42)
T TIGR02996 4 ALLRAILAHPDDDTPRLVYADWLDEHGDPARA 35 (42)
T ss_pred HHHHHHHhCCCCcchHHHHHHHHHHcCCHHHH
Confidence 46677888899988999999999888887554
No 474
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=20.58 E-value=2.1e+02 Score=22.12 Aligned_cols=20 Identities=25% Similarity=0.408 Sum_probs=10.7
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 007407 510 ECKKRGSIETARAIFSPACT 529 (605)
Q Consensus 510 ~~~~~g~~~~A~~i~~~al~ 529 (605)
.+-+.|++++|+..|..++.
T Consensus 14 ~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 14 EADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 34445556666665555544
No 475
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=20.53 E-value=9.1e+02 Score=27.59 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CHHHHHHH
Q 007407 500 KKRTWVADVEECKKRGSIETARAIFSPACTVFLT-KKNIWLKA 541 (605)
Q Consensus 500 ~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~-~~~~w~~l 541 (605)
-..+|..++..+.+.+++..||.-|+++++.--. -+.+.+.+
T Consensus 586 ~f~aW~AWGlA~Lk~e~~aaAR~KFkqafklkgedipdvi~di 628 (1141)
T KOG1811|consen 586 TFGAWHAWGLACLKAENLAAAREKFKQAFKLKGEDIPDVIFDI 628 (1141)
T ss_pred cccHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCccchHHHHH
Confidence 4456666777777777777777777777665322 23444444
No 476
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=20.49 E-value=1.7e+02 Score=25.08 Aligned_cols=37 Identities=24% Similarity=0.285 Sum_probs=0.0
Q ss_pred hccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcC
Q 007407 264 LRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANE 300 (605)
Q Consensus 264 ~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~ 300 (605)
.||+.+|++.+.++.+..+..+-.++..|+.....|+
T Consensus 72 ~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 72 EGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
No 477
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=20.45 E-value=1.9e+02 Score=32.64 Aligned_cols=69 Identities=10% Similarity=-0.023 Sum_probs=50.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc--CChHHHHHHHHHHHHHCCC
Q 007407 533 TKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQ-AEVLWLMGAKEKWLA--GDVPATRDILQEAYAAIPN 601 (605)
Q Consensus 533 ~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~-~~~l~l~~a~~~~~~--gd~~~Ar~il~kAl~~~P~ 601 (605)
+-..+|.+||..+.+.+++..|+.-|.+|++.-.. -|.+........... .++...+++|+...+-.|.
T Consensus 585 D~f~aW~AWGlA~Lk~e~~aaAR~KFkqafklkgedipdvi~diin~ieGgpp~dVq~Vrem~dhlak~apt 656 (1141)
T KOG1811|consen 585 DTFGAWHAWGLACLKAENLAAAREKFKQAFKLKGEDIPDVIFDIINLIEGGPPRDVQDVREMLDHLAKPAPT 656 (1141)
T ss_pred CcccHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCccchHHHHHHHhhcCCCcchHHHHHHHHHHhccCCcc
Confidence 34579999999999999999999999999987533 366655555544322 4677788888776665554
No 478
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=20.03 E-value=2e+02 Score=23.52 Aligned_cols=16 Identities=31% Similarity=0.403 Sum_probs=9.1
Q ss_pred CCHHHHHHHHHHHHHh
Q 007407 549 GCRESLIALLRKAVTY 564 (605)
Q Consensus 549 g~~e~A~~~lekAl~~ 564 (605)
|..+.|+.+|++++..
T Consensus 22 g~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 22 GDKEQALAHYRKGLRE 37 (79)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 5555566666655543
Done!