Query 007407
Match_columns 605
No_of_seqs 341 out of 1927
Neff 8.0
Searched_HMMs 29240
Date Tue Mar 26 01:02:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007407.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007407hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 100.0 2.1E-30 7E-35 274.0 43.4 335 261-603 9-373 (388)
2 1w3b_A UDP-N-acetylglucosamine 100.0 5.9E-29 2E-33 262.8 38.5 317 260-584 42-388 (388)
3 2ooe_A Cleavage stimulation fa 100.0 5.8E-29 2E-33 275.6 36.3 331 262-601 23-495 (530)
4 2ooe_A Cleavage stimulation fa 100.0 5.6E-28 1.9E-32 267.7 36.7 321 273-603 1-459 (530)
5 4e6h_A MRNA 3'-END-processing 100.0 3.7E-27 1.3E-31 267.5 37.1 351 245-604 65-576 (679)
6 2xpi_A Anaphase-promoting comp 100.0 5.6E-26 1.9E-30 253.0 41.1 332 260-603 159-584 (597)
7 3fp2_A TPR repeat-containing p 100.0 1.1E-26 3.8E-31 254.7 34.7 245 350-603 220-496 (537)
8 2gw1_A Mitochondrial precursor 100.0 6.8E-27 2.3E-31 254.4 32.1 246 349-603 206-483 (514)
9 2y4t_A DNAJ homolog subfamily 100.0 1E-25 3.6E-30 241.6 39.1 339 259-603 34-415 (450)
10 3ieg_A DNAJ homolog subfamily 100.0 3.4E-25 1.2E-29 228.4 38.4 302 260-580 12-351 (359)
11 2y4t_A DNAJ homolog subfamily 100.0 4.9E-25 1.7E-29 236.4 39.7 315 268-603 9-363 (450)
12 4e6h_A MRNA 3'-END-processing 99.9 3.1E-25 1.1E-29 251.7 36.1 326 270-601 51-536 (679)
13 2xpi_A Anaphase-promoting comp 99.9 7.8E-25 2.7E-29 243.8 35.7 332 259-603 125-550 (597)
14 2gw1_A Mitochondrial precursor 99.9 1.1E-23 3.8E-28 229.0 31.0 342 227-577 18-491 (514)
15 3hym_B Cell division cycle pro 99.9 2.6E-23 8.9E-28 212.3 31.4 294 276-587 13-323 (330)
16 3ieg_A DNAJ homolog subfamily 99.9 8E-23 2.7E-27 210.6 35.0 311 228-549 16-354 (359)
17 3fp2_A TPR repeat-containing p 99.9 6.4E-23 2.2E-27 224.8 35.0 342 223-573 33-500 (537)
18 3hym_B Cell division cycle pro 99.9 1.2E-22 3.9E-27 207.5 31.6 277 261-552 32-322 (330)
19 2ond_A Cleavage stimulation fa 99.9 2.5E-23 8.4E-28 214.2 26.4 234 363-604 5-276 (308)
20 1fch_A Peroxisomal targeting s 99.9 2.6E-23 8.9E-28 216.5 25.2 307 261-600 35-361 (368)
21 4g1t_A Interferon-induced prot 99.9 7E-22 2.4E-26 213.6 33.1 330 260-604 60-465 (472)
22 2uy1_A Cleavage stimulation fa 99.9 2.7E-21 9.2E-26 212.7 33.6 322 265-599 28-414 (493)
23 3cv0_A Peroxisome targeting si 99.9 5.4E-22 1.9E-26 202.2 25.4 277 260-604 30-321 (327)
24 4eqf_A PEX5-related protein; a 99.9 4.7E-22 1.6E-26 207.8 25.4 278 273-599 49-357 (365)
25 2uy1_A Cleavage stimulation fa 99.9 1.1E-20 3.7E-25 207.9 33.3 308 261-595 4-380 (493)
26 2ond_A Cleavage stimulation fa 99.9 9.4E-21 3.2E-25 194.8 26.1 244 282-569 5-275 (308)
27 1fch_A Peroxisomal targeting s 99.9 4.5E-20 1.5E-24 192.0 29.9 274 259-565 72-360 (368)
28 3cv0_A Peroxisome targeting si 99.9 7E-20 2.4E-24 186.5 29.3 276 220-567 26-318 (327)
29 4eqf_A PEX5-related protein; a 99.9 2.7E-20 9.2E-25 194.4 26.5 230 372-602 75-314 (365)
30 4g1t_A Interferon-induced prot 99.9 2E-19 6.7E-24 194.3 29.4 302 260-576 103-471 (472)
31 2h6f_A Protein farnesyltransfe 99.8 2.1E-19 7.3E-24 191.2 24.2 195 378-581 148-365 (382)
32 2h6f_A Protein farnesyltransfe 99.8 6.9E-20 2.4E-24 194.9 19.8 234 360-602 91-352 (382)
33 2pl2_A Hypothetical conserved 99.8 4.6E-19 1.6E-23 172.9 22.8 181 407-596 20-212 (217)
34 3uq3_A Heat shock protein STI1 99.8 5.6E-19 1.9E-23 173.5 23.2 214 373-603 16-247 (258)
35 3u4t_A TPR repeat-containing p 99.8 1.1E-18 3.7E-23 173.8 21.8 224 372-604 13-256 (272)
36 3mkr_A Coatomer subunit epsilo 99.8 5.8E-18 2E-22 173.2 26.6 254 262-574 10-274 (291)
37 3vtx_A MAMA; tetratricopeptide 99.8 6E-18 2E-22 159.1 23.6 173 423-603 2-175 (184)
38 3u4t_A TPR repeat-containing p 99.8 5.5E-18 1.9E-22 168.6 22.6 238 261-580 13-266 (272)
39 2vq2_A PILW, putative fimbrial 99.8 4.3E-17 1.5E-21 156.4 28.2 207 391-603 3-216 (225)
40 2ho1_A Type 4 fimbrial biogene 99.8 2.1E-17 7.4E-22 162.6 26.1 204 392-603 32-243 (252)
41 3uq3_A Heat shock protein STI1 99.8 2.7E-17 9.3E-22 161.3 26.5 131 440-578 120-256 (258)
42 2q7f_A YRRB protein; TPR, prot 99.8 1.7E-17 5.8E-22 161.7 23.9 190 406-603 37-227 (243)
43 2pl2_A Hypothetical conserved 99.8 1.5E-17 5.1E-22 162.1 22.7 173 422-603 1-185 (217)
44 3mkr_A Coatomer subunit epsilo 99.8 1.2E-16 3.9E-21 163.5 29.1 254 292-604 6-270 (291)
45 2xm6_A Protein corresponding t 99.8 5E-15 1.7E-19 161.9 40.9 312 264-601 56-435 (490)
46 2q7f_A YRRB protein; TPR, prot 99.8 6.7E-17 2.3E-21 157.5 22.7 202 373-582 34-240 (243)
47 4a1s_A PINS, partner of inscut 99.7 4.5E-17 1.5E-21 172.3 21.3 276 260-600 57-374 (411)
48 2vq2_A PILW, putative fimbrial 99.7 9.2E-16 3.1E-20 147.1 28.3 209 361-575 3-222 (225)
49 3vtx_A MAMA; tetratricopeptide 99.7 2E-16 6.9E-21 148.5 22.5 171 393-571 2-177 (184)
50 3ro2_A PINS homolog, G-protein 99.7 1.5E-16 5.1E-21 161.2 22.3 277 261-602 15-336 (338)
51 2ho1_A Type 4 fimbrial biogene 99.7 5.5E-16 1.9E-20 152.5 25.6 209 361-575 31-249 (252)
52 3sf4_A G-protein-signaling mod 99.7 3.5E-16 1.2E-20 164.1 25.1 296 260-596 18-374 (406)
53 4abn_A Tetratricopeptide repea 99.7 1.2E-16 4.1E-21 174.8 22.4 208 378-594 84-317 (474)
54 3sf4_A G-protein-signaling mod 99.7 2.4E-16 8.3E-21 165.3 22.4 278 282-600 6-338 (406)
55 4i17_A Hypothetical protein; T 99.7 3.1E-16 1E-20 152.8 20.8 173 425-604 6-215 (228)
56 1xnf_A Lipoprotein NLPI; TPR, 99.7 2.8E-16 9.6E-21 156.0 20.5 231 349-592 22-269 (275)
57 1xnf_A Lipoprotein NLPI; TPR, 99.7 6.1E-16 2.1E-20 153.6 22.9 246 261-558 15-269 (275)
58 4gyw_A UDP-N-acetylglucosamine 99.7 4.2E-16 1.4E-20 178.5 21.8 173 421-601 4-177 (723)
59 4abn_A Tetratricopeptide repea 99.7 1E-15 3.4E-20 167.4 22.6 188 407-603 83-292 (474)
60 1ouv_A Conserved hypothetical 99.7 2.3E-14 7.8E-19 143.4 30.0 220 363-602 3-255 (273)
61 2xm6_A Protein corresponding t 99.7 4.6E-13 1.6E-17 146.3 41.5 302 272-599 28-397 (490)
62 3ro2_A PINS homolog, G-protein 99.7 3E-15 1E-19 151.6 22.3 287 221-567 11-335 (338)
63 4a1s_A PINS, partner of inscut 99.7 3E-15 1E-19 158.3 22.8 285 220-568 53-376 (411)
64 3as5_A MAMA; tetratricopeptide 99.7 4.9E-15 1.7E-19 137.0 21.0 170 426-603 8-178 (186)
65 3qky_A Outer membrane assembly 99.7 6.5E-15 2.2E-19 146.7 21.4 182 420-603 9-229 (261)
66 1ouv_A Conserved hypothetical 99.6 1.9E-13 6.5E-18 136.7 31.3 235 281-574 2-261 (273)
67 4i17_A Hypothetical protein; T 99.6 2.1E-14 7E-19 139.7 23.2 197 375-579 20-224 (228)
68 3nf1_A KLC 1, kinesin light ch 99.6 1.8E-14 6.3E-19 145.1 20.7 240 362-601 23-310 (311)
69 3dra_A Protein farnesyltransfe 99.6 1.6E-13 5.5E-18 141.1 24.7 216 378-601 49-291 (306)
70 4gyw_A UDP-N-acetylglucosamine 99.6 3E-14 1E-18 163.2 20.8 169 391-567 4-177 (723)
71 3qky_A Outer membrane assembly 99.6 1.1E-13 3.7E-18 137.8 21.8 196 390-587 9-250 (261)
72 2yhc_A BAMD, UPF0169 lipoprote 99.6 1.9E-13 6.5E-18 133.5 23.0 175 428-604 6-219 (225)
73 2pzi_A Probable serine/threoni 99.6 1.5E-14 5.3E-19 165.1 17.6 185 391-584 389-583 (681)
74 4ga2_A E3 SUMO-protein ligase 99.6 2.2E-15 7.7E-20 138.1 8.4 139 437-583 9-148 (150)
75 1qqe_A Vesicular transport pro 99.6 4.4E-14 1.5E-18 143.9 18.8 241 351-602 4-273 (292)
76 1qqe_A Vesicular transport pro 99.6 5.2E-14 1.8E-18 143.3 19.1 209 380-603 3-233 (292)
77 3e4b_A ALGK; tetratricopeptide 99.6 6.7E-13 2.3E-17 144.0 28.1 309 262-599 14-388 (452)
78 4ga2_A E3 SUMO-protein ligase 99.6 2E-14 6.9E-19 131.6 12.2 130 472-604 5-135 (150)
79 3ulq_A Response regulator aspa 99.6 5.2E-13 1.8E-17 140.6 24.7 228 373-601 114-371 (383)
80 3urz_A Uncharacterized protein 99.5 1E-13 3.5E-18 133.9 16.2 129 470-602 60-190 (208)
81 3gyz_A Chaperone protein IPGC; 99.5 1.1E-14 3.9E-19 134.1 9.0 115 486-603 24-138 (151)
82 1hz4_A MALT regulatory protein 99.5 6.6E-12 2.3E-16 131.2 30.7 293 261-600 24-351 (373)
83 3as5_A MAMA; tetratricopeptide 99.5 5.4E-13 1.9E-17 123.1 19.6 157 405-569 21-178 (186)
84 4gco_A Protein STI-1; structur 99.5 7.7E-14 2.6E-18 124.0 13.2 105 500-604 12-116 (126)
85 2fo7_A Synthetic consensus TPR 99.5 1.1E-12 3.9E-17 114.0 19.7 134 466-602 3-136 (136)
86 3dss_A Geranylgeranyl transfer 99.5 1.5E-11 5.2E-16 127.3 31.3 215 379-601 47-307 (331)
87 3dra_A Protein farnesyltransfe 99.5 4.5E-12 1.5E-16 130.3 27.2 235 335-577 36-301 (306)
88 3qou_A Protein YBBN; thioredox 99.5 7.9E-13 2.7E-17 134.5 20.8 169 422-598 113-284 (287)
89 2pzi_A Probable serine/threoni 99.5 7.4E-14 2.5E-18 159.5 14.4 172 421-603 389-568 (681)
90 1hz4_A MALT regulatory protein 99.5 5.4E-12 1.9E-16 131.8 27.1 278 286-600 15-324 (373)
91 3edt_B KLC 2, kinesin light ch 99.5 6.8E-13 2.3E-17 131.2 18.9 222 377-598 16-281 (283)
92 2vsy_A XCC0866; transferase, g 99.5 9.1E-13 3.1E-17 146.7 21.2 162 407-576 4-169 (568)
93 2vgx_A Chaperone SYCD; alterna 99.5 3.2E-13 1.1E-17 123.5 13.8 116 486-604 9-124 (148)
94 3nf1_A KLC 1, kinesin light ch 99.5 9.8E-13 3.3E-17 132.3 18.7 223 345-567 40-310 (311)
95 2xcb_A PCRH, regulatory protei 99.5 2.8E-13 9.5E-18 122.3 11.2 116 486-604 6-121 (142)
96 3ulq_A Response regulator aspa 99.4 5.6E-12 1.9E-16 132.6 21.6 233 367-600 17-295 (383)
97 2r5s_A Uncharacterized protein 99.4 1.2E-12 4.2E-17 122.5 14.4 166 424-598 4-173 (176)
98 2e2e_A Formate-dependent nitri 99.4 2.3E-12 8E-17 120.0 14.8 126 476-604 22-150 (177)
99 3e4b_A ALGK; tetratricopeptide 99.4 3.5E-11 1.2E-15 130.4 26.0 309 262-599 46-422 (452)
100 4gco_A Protein STI-1; structur 99.4 6.7E-12 2.3E-16 111.4 16.5 113 463-578 12-124 (126)
101 2vsy_A XCC0866; transferase, g 99.4 5.4E-12 1.8E-16 140.5 18.8 157 439-603 3-162 (568)
102 3qou_A Protein YBBN; thioredox 99.4 1.2E-11 4.1E-16 125.6 18.9 165 392-564 113-284 (287)
103 2yhc_A BAMD, UPF0169 lipoprote 99.4 4.8E-11 1.6E-15 116.3 21.4 175 373-568 15-217 (225)
104 2ifu_A Gamma-SNAP; membrane fu 99.4 1.1E-11 3.7E-16 127.1 17.5 223 350-591 9-254 (307)
105 1hxi_A PEX5, peroxisome target 99.4 4.6E-12 1.6E-16 111.5 12.6 104 502-605 18-121 (121)
106 1a17_A Serine/threonine protei 99.4 4.2E-11 1.4E-15 109.0 19.0 134 463-599 12-147 (166)
107 3upv_A Heat shock protein STI1 99.4 6.7E-12 2.3E-16 110.1 13.1 100 500-599 3-102 (126)
108 3dss_A Geranylgeranyl transfer 99.3 7.4E-11 2.5E-15 122.1 22.6 187 408-602 46-271 (331)
109 3q7a_A Farnesyltransferase alp 99.3 4.3E-11 1.5E-15 124.5 20.8 215 378-600 70-334 (349)
110 3urz_A Uncharacterized protein 99.3 2.1E-11 7.1E-16 117.5 17.1 174 373-569 15-191 (208)
111 3sz7_A HSC70 cochaperone (SGT) 99.3 1.8E-11 6.1E-16 112.8 15.9 111 463-576 10-120 (164)
112 3q15_A PSP28, response regulat 99.3 4E-11 1.4E-15 126.1 20.6 223 373-599 112-366 (378)
113 1xi4_A Clathrin heavy chain; a 99.3 5.1E-10 1.8E-14 132.0 31.7 303 260-597 994-1344(1630)
114 3q15_A PSP28, response regulat 99.3 1.3E-10 4.5E-15 122.1 23.4 233 368-601 18-293 (378)
115 2fo7_A Synthetic consensus TPR 99.3 1.4E-10 4.7E-15 100.6 19.2 134 427-568 2-136 (136)
116 1xi4_A Clathrin heavy chain; a 99.3 1.2E-09 4E-14 129.0 32.1 214 349-593 1151-1379(1630)
117 3gyz_A Chaperone protein IPGC; 99.3 5.9E-11 2E-15 109.1 17.1 105 462-569 34-138 (151)
118 1hh8_A P67PHOX, NCF-2, neutrop 99.3 4.3E-11 1.5E-15 114.3 16.8 131 466-602 8-154 (213)
119 1p5q_A FKBP52, FK506-binding p 99.3 9.3E-12 3.2E-16 129.6 12.9 167 405-598 126-294 (336)
120 2vgx_A Chaperone SYCD; alterna 99.3 1.4E-11 4.7E-16 112.5 12.0 121 446-574 8-128 (148)
121 3edt_B KLC 2, kinesin light ch 99.3 2.4E-11 8.3E-16 119.9 14.3 164 437-600 13-200 (283)
122 2vyi_A SGTA protein; chaperone 99.3 1.4E-10 4.7E-15 100.4 17.0 120 463-585 11-130 (131)
123 3upv_A Heat shock protein STI1 99.3 1.1E-10 3.9E-15 102.1 16.3 115 463-580 3-123 (126)
124 3q49_B STIP1 homology and U bo 99.3 4.1E-11 1.4E-15 106.0 13.2 102 500-601 8-109 (137)
125 2r5s_A Uncharacterized protein 99.3 2E-11 6.9E-16 114.1 11.7 135 465-603 7-142 (176)
126 2xcb_A PCRH, regulatory protei 99.3 2E-11 6.8E-16 110.0 11.2 113 463-578 17-129 (142)
127 2ifu_A Gamma-SNAP; membrane fu 99.3 3.4E-10 1.2E-14 115.8 21.6 204 377-602 6-227 (307)
128 2lni_A Stress-induced-phosphop 99.3 1E-10 3.5E-15 102.0 15.2 120 462-584 14-133 (133)
129 1elw_A TPR1-domain of HOP; HOP 99.3 1.4E-10 4.9E-15 98.5 15.4 110 465-577 5-114 (118)
130 3rjv_A Putative SEL1 repeat pr 99.2 3.5E-10 1.2E-14 109.4 19.4 173 411-599 5-198 (212)
131 2e2e_A Formate-dependent nitri 99.2 1.5E-10 5.1E-15 107.6 16.2 147 437-598 22-171 (177)
132 2kck_A TPR repeat; tetratricop 99.2 4.8E-11 1.6E-15 100.7 11.7 104 500-603 5-111 (112)
133 2lni_A Stress-induced-phosphop 99.2 1.3E-10 4.5E-15 101.3 14.0 105 499-603 14-118 (133)
134 4f3v_A ESX-1 secretion system 99.2 1.5E-10 5.3E-15 116.8 16.0 135 463-601 101-240 (282)
135 1dce_A Protein (RAB geranylger 99.2 2.2E-11 7.6E-16 135.8 10.6 153 441-601 89-270 (567)
136 4gcn_A Protein STI-1; structur 99.2 1.6E-10 5.6E-15 102.3 14.1 103 500-602 7-116 (127)
137 2vyi_A SGTA protein; chaperone 99.2 4.1E-10 1.4E-14 97.4 16.4 105 499-603 10-114 (131)
138 3sz7_A HSC70 cochaperone (SGT) 99.2 2.3E-10 7.8E-15 105.3 15.5 106 499-604 9-114 (164)
139 2hr2_A Hypothetical protein; a 99.2 1.2E-10 3.9E-15 107.4 13.1 105 501-605 11-138 (159)
140 1elw_A TPR1-domain of HOP; HOP 99.2 5.7E-10 2E-14 94.7 16.6 104 500-603 3-106 (118)
141 1na0_A Designed protein CTPR3; 99.2 9E-10 3.1E-14 94.3 17.9 116 464-582 9-124 (125)
142 2xev_A YBGF; tetratricopeptide 99.2 3.3E-10 1.1E-14 98.9 14.4 115 467-581 5-122 (129)
143 3q7a_A Farnesyltransferase alp 99.2 4.4E-09 1.5E-13 109.4 24.9 234 337-578 59-346 (349)
144 1na0_A Designed protein CTPR3; 99.2 8.8E-10 3E-14 94.4 16.3 104 500-603 8-111 (125)
145 2dba_A Smooth muscle cell asso 99.2 4.5E-10 1.5E-14 100.0 14.7 118 462-579 26-143 (148)
146 3rkv_A Putative peptidylprolyl 99.2 2.6E-10 8.9E-15 104.7 13.4 119 463-581 10-144 (162)
147 1p5q_A FKBP52, FK506-binding p 99.2 8.8E-11 3E-15 122.2 11.1 164 375-564 126-294 (336)
148 1hxi_A PEX5, peroxisome target 99.2 2.5E-10 8.7E-15 100.2 12.3 103 465-570 18-120 (121)
149 1a17_A Serine/threonine protei 99.2 8.6E-10 2.9E-14 100.2 16.3 104 500-603 12-115 (166)
150 4f3v_A ESX-1 secretion system 99.2 2.5E-10 8.6E-15 115.2 13.6 193 377-577 21-249 (282)
151 3q49_B STIP1 homology and U bo 99.1 6.7E-10 2.3E-14 98.0 14.7 117 462-581 7-128 (137)
152 2dba_A Smooth muscle cell asso 99.1 1.2E-09 4E-14 97.3 16.4 104 500-603 27-133 (148)
153 2fbn_A 70 kDa peptidylprolyl i 99.1 8.9E-10 3E-14 104.6 15.8 133 464-596 38-184 (198)
154 2xev_A YBGF; tetratricopeptide 99.1 3.3E-09 1.1E-13 92.4 17.8 101 503-603 4-110 (129)
155 2c2l_A CHIP, carboxy terminus 99.1 2.9E-10 1E-14 115.0 12.3 192 393-599 1-200 (281)
156 2if4_A ATFKBP42; FKBP-like, al 99.1 1.2E-10 4.2E-15 121.3 9.0 157 423-604 176-334 (338)
157 3rkv_A Putative peptidylprolyl 99.1 1E-09 3.5E-14 100.7 14.1 100 504-603 14-131 (162)
158 3k9i_A BH0479 protein; putativ 99.1 6.1E-11 2.1E-15 103.0 5.4 98 477-574 3-100 (117)
159 2fbn_A 70 kDa peptidylprolyl i 99.1 2.5E-10 8.4E-15 108.5 10.1 104 500-603 37-156 (198)
160 2qfc_A PLCR protein; TPR, HTH, 99.1 5.6E-09 1.9E-13 105.7 20.8 172 428-599 77-267 (293)
161 1b89_A Protein (clathrin heavy 99.1 7.4E-11 2.5E-15 125.8 6.9 280 262-595 14-308 (449)
162 1elr_A TPR2A-domain of HOP; HO 99.1 1.4E-09 4.6E-14 94.2 13.9 112 464-579 4-122 (131)
163 1hh8_A P67PHOX, NCF-2, neutrop 99.1 3.9E-09 1.3E-13 100.5 17.6 130 429-569 9-155 (213)
164 1kt0_A FKBP51, 51 kDa FK506-bi 99.1 2.5E-10 8.6E-15 123.9 10.1 159 405-590 247-406 (457)
165 3u3w_A Transcriptional activat 99.1 3.7E-09 1.3E-13 107.0 17.9 163 437-599 87-267 (293)
166 3rjv_A Putative SEL1 repeat pr 99.1 1E-08 3.6E-13 98.9 20.2 183 379-577 3-208 (212)
167 1dce_A Protein (RAB geranylger 99.1 3E-09 1E-13 118.5 18.5 165 408-604 45-227 (567)
168 3k9i_A BH0479 protein; putativ 99.1 9.5E-10 3.3E-14 95.3 11.4 91 514-604 3-96 (117)
169 2c2l_A CHIP, carboxy terminus 99.0 1.6E-09 5.3E-14 109.7 13.4 103 463-568 3-105 (281)
170 1wao_1 Serine/threonine protei 99.0 1.2E-10 4.1E-15 127.2 5.3 134 467-603 9-155 (477)
171 3mv2_B Coatomer subunit epsilo 99.0 5.1E-09 1.8E-13 107.0 16.9 47 407-453 115-164 (310)
172 1kt0_A FKBP51, 51 kDa FK506-bi 99.0 2.2E-10 7.5E-15 124.4 7.1 105 500-604 267-386 (457)
173 1elr_A TPR2A-domain of HOP; HO 99.0 5.1E-09 1.8E-13 90.5 14.0 102 500-601 3-111 (131)
174 1b89_A Protein (clathrin heavy 99.0 5.4E-10 1.8E-14 119.2 8.6 276 231-559 19-306 (449)
175 4gcn_A Protein STI-1; structur 99.0 1.1E-08 3.6E-13 90.5 15.4 107 464-574 8-121 (127)
176 1ihg_A Cyclophilin 40; ppiase 99.0 5.3E-09 1.8E-13 110.3 15.7 140 426-591 223-363 (370)
177 1zu2_A Mitochondrial import re 99.0 1.2E-09 4E-14 100.5 8.9 86 517-602 18-124 (158)
178 2hr2_A Hypothetical protein; a 98.9 6.9E-09 2.3E-13 95.5 12.5 108 464-571 11-138 (159)
179 2kck_A TPR repeat; tetratricop 98.9 4.7E-09 1.6E-13 88.2 10.6 103 463-568 5-110 (112)
180 3gw4_A Uncharacterized protein 98.9 1.5E-08 5E-13 95.3 14.7 98 501-598 66-176 (203)
181 3ro3_A PINS homolog, G-protein 98.9 1.7E-08 5.6E-13 90.2 14.1 139 464-602 9-162 (164)
182 1zu2_A Mitochondrial import re 98.9 4.7E-09 1.6E-13 96.4 10.1 98 475-575 13-131 (158)
183 2kat_A Uncharacterized protein 98.9 6.2E-09 2.1E-13 89.5 10.0 82 482-566 3-84 (115)
184 4h7y_A Dual specificity protei 98.9 1.1E-08 3.8E-13 91.5 11.0 110 461-571 10-130 (161)
185 3gw4_A Uncharacterized protein 98.9 9.9E-08 3.4E-12 89.5 18.5 161 405-566 5-178 (203)
186 2qfc_A PLCR protein; TPR, HTH, 98.9 3.3E-07 1.1E-11 92.5 23.2 161 405-565 88-267 (293)
187 1ihg_A Cyclophilin 40; ppiase 98.9 8.1E-09 2.8E-13 108.9 11.6 76 529-604 267-342 (370)
188 3mv2_B Coatomer subunit epsilo 98.8 1.5E-07 5.2E-12 96.1 19.2 188 411-604 85-288 (310)
189 3u3w_A Transcriptional activat 98.8 3.6E-07 1.2E-11 92.2 21.9 161 405-565 88-267 (293)
190 1na3_A Designed protein CTPR2; 98.8 8.4E-08 2.9E-12 77.8 13.1 84 500-583 8-91 (91)
191 2if4_A ATFKBP42; FKBP-like, al 98.8 1.2E-08 4.1E-13 106.1 9.8 152 394-569 177-333 (338)
192 2kc7_A BFR218_protein; tetratr 98.8 1.5E-08 5E-13 84.4 8.2 92 505-604 4-96 (99)
193 4b4t_Q 26S proteasome regulato 98.8 1.9E-07 6.5E-12 98.8 18.9 217 370-599 12-246 (434)
194 1wao_1 Serine/threonine protei 98.8 1E-08 3.5E-13 111.9 9.1 105 500-604 5-109 (477)
195 2l6j_A TPR repeat-containing p 98.8 5.3E-09 1.8E-13 88.4 5.1 94 500-593 3-102 (111)
196 4h7y_A Dual specificity protei 98.7 2.1E-07 7.2E-12 83.3 14.0 117 421-541 8-134 (161)
197 3ma5_A Tetratricopeptide repea 98.7 3.7E-08 1.3E-12 83.0 8.0 67 500-566 6-72 (100)
198 3ro3_A PINS homolog, G-protein 98.7 3.5E-07 1.2E-11 81.4 14.9 141 427-567 10-161 (164)
199 2kat_A Uncharacterized protein 98.7 1.8E-07 6.2E-12 80.2 12.3 84 519-602 3-86 (115)
200 3u64_A Protein TP_0956; tetrat 98.7 1.4E-06 5E-11 87.2 20.1 86 517-602 179-273 (301)
201 4b4t_Q 26S proteasome regulato 98.6 4E-06 1.4E-10 88.6 21.4 208 349-565 21-246 (434)
202 3u64_A Protein TP_0956; tetrat 98.5 5.8E-06 2E-10 82.8 20.3 88 480-568 179-273 (301)
203 3ma5_A Tetratricopeptide repea 98.5 6.7E-07 2.3E-11 75.1 10.4 73 530-602 2-74 (100)
204 2l6j_A TPR repeat-containing p 98.4 1.1E-07 3.9E-12 80.0 4.2 95 463-560 3-103 (111)
205 3n71_A Histone lysine methyltr 98.4 1.2E-06 4E-11 95.7 13.2 125 474-598 319-464 (490)
206 1na3_A Designed protein CTPR2; 98.4 2.7E-06 9.3E-11 68.6 12.3 84 463-549 8-91 (91)
207 3bee_A Putative YFRE protein; 98.4 1.5E-06 5.2E-11 72.5 10.0 68 500-567 5-75 (93)
208 2kc7_A BFR218_protein; tetratr 98.3 1.1E-06 3.7E-11 72.9 7.5 90 468-568 4-94 (99)
209 1klx_A Cysteine rich protein B 98.2 4.5E-05 1.6E-09 68.0 14.9 110 479-599 10-127 (138)
210 3ly7_A Transcriptional activat 98.1 8.7E-05 3E-09 77.1 18.1 73 529-602 271-343 (372)
211 3n71_A Histone lysine methyltr 98.1 3E-05 1E-09 84.6 14.9 140 436-575 320-475 (490)
212 1pc2_A Mitochondria fission pr 98.0 2.2E-05 7.4E-10 71.3 10.4 91 480-573 14-109 (152)
213 4g26_A Pentatricopeptide repea 98.0 0.00067 2.3E-08 74.1 23.6 154 437-597 38-203 (501)
214 3bee_A Putative YFRE protein; 98.0 2.8E-05 9.5E-10 64.7 9.4 73 531-603 2-77 (93)
215 3ly7_A Transcriptional activat 97.9 0.00075 2.5E-08 70.1 19.2 154 385-570 183-345 (372)
216 1pc2_A Mitochondria fission pr 97.8 0.00016 5.6E-09 65.5 12.4 87 517-603 14-105 (152)
217 3qww_A SET and MYND domain-con 97.8 0.00018 6.1E-09 77.1 14.4 98 476-573 310-425 (433)
218 1klx_A Cysteine rich protein B 97.8 0.00039 1.3E-08 61.8 14.1 110 440-565 10-127 (138)
219 3qww_A SET and MYND domain-con 97.7 7.3E-05 2.5E-09 80.2 9.9 86 513-598 310-411 (433)
220 2v5f_A Prolyl 4-hydroxylase su 97.7 0.00039 1.3E-08 58.6 11.5 76 501-576 5-87 (104)
221 3qwp_A SET and MYND domain-con 97.6 0.00061 2.1E-08 72.9 15.3 102 473-574 296-415 (429)
222 3qwp_A SET and MYND domain-con 97.6 0.00018 6.2E-09 77.0 10.8 91 508-598 294-400 (429)
223 4g26_A Pentatricopeptide repea 97.6 0.0066 2.3E-07 66.2 22.5 153 406-564 40-204 (501)
224 2v5f_A Prolyl 4-hydroxylase su 97.6 0.0004 1.4E-08 58.5 9.9 70 534-603 4-80 (104)
225 1nzn_A CGI-135 protein, fissio 97.0 0.0028 9.5E-08 55.4 9.5 90 480-572 17-111 (126)
226 1nzn_A CGI-135 protein, fissio 96.7 0.017 5.8E-07 50.4 11.6 85 518-602 18-107 (126)
227 3ffl_A Anaphase-promoting comp 96.3 0.019 6.6E-07 52.4 9.8 91 504-594 23-147 (167)
228 3esl_A Checkpoint serine/threo 95.5 0.42 1.4E-05 44.9 15.3 119 411-531 11-145 (202)
229 3txn_A 26S proteasome regulato 95.4 0.43 1.5E-05 50.0 16.8 94 506-599 104-211 (394)
230 3o48_A Mitochondria fission 1 94.8 0.12 4.2E-06 45.2 8.7 73 500-572 39-115 (134)
231 3esl_A Checkpoint serine/threo 94.6 0.62 2.1E-05 43.8 13.7 124 441-567 8-147 (202)
232 3mkq_B Coatomer subunit alpha; 94.5 0.83 2.8E-05 42.1 14.3 125 437-595 17-141 (177)
233 4a1g_A Mitotic checkpoint seri 94.4 0.64 2.2E-05 41.7 12.9 113 411-531 9-131 (152)
234 1y8m_A FIS1; mitochondria, unk 94.2 0.62 2.1E-05 41.3 12.0 72 500-571 38-113 (144)
235 4gns_B Protein CSD3, chitin bi 94.1 0.27 9.3E-06 55.8 12.0 119 438-566 261-398 (754)
236 4gns_B Protein CSD3, chitin bi 94.0 0.41 1.4E-05 54.3 13.3 116 408-526 265-396 (754)
237 2ff4_A Probable regulatory pro 94.0 0.65 2.2E-05 48.5 14.2 107 471-595 122-231 (388)
238 3ffl_A Anaphase-promoting comp 93.8 0.31 1.1E-05 44.4 9.7 108 471-579 27-165 (167)
239 4aez_C MAD3, mitotic spindle c 93.6 0.68 2.3E-05 44.2 12.0 113 412-531 55-180 (223)
240 2ff4_A Probable regulatory pro 93.5 1.1 3.8E-05 46.7 14.8 107 437-564 127-234 (388)
241 3o48_A Mitochondria fission 1 93.4 0.53 1.8E-05 41.2 10.0 82 462-545 38-122 (134)
242 1zbp_A Hypothetical protein VP 93.4 0.98 3.3E-05 44.4 13.0 121 472-603 5-134 (273)
243 4aez_C MAD3, mitotic spindle c 93.2 2.4 8.1E-05 40.5 15.0 117 443-567 53-182 (223)
244 4a1g_A Mitotic checkpoint seri 93.2 0.76 2.6E-05 41.2 11.0 117 441-567 6-133 (152)
245 2wvi_A Mitotic checkpoint seri 93.0 0.51 1.7E-05 43.0 9.6 113 461-579 16-141 (164)
246 1y8m_A FIS1; mitochondria, unk 92.3 1.7 5.7E-05 38.5 11.8 78 462-541 37-117 (144)
247 2wvi_A Mitotic checkpoint seri 92.2 2.5 8.4E-05 38.4 13.2 103 425-534 18-129 (164)
248 3mkq_A Coatomer beta'-subunit; 91.5 4.7 0.00016 45.3 17.9 28 424-451 679-707 (814)
249 3mkq_A Coatomer beta'-subunit; 90.3 3 0.0001 46.9 14.7 102 472-594 660-761 (814)
250 3spa_A Mtrpol, DNA-directed RN 89.4 3.9 0.00013 47.8 14.3 96 467-564 130-230 (1134)
251 3txn_A 26S proteasome regulato 89.4 22 0.00076 36.9 23.4 99 432-531 105-211 (394)
252 3mkq_B Coatomer subunit alpha; 88.9 3.6 0.00012 37.8 11.3 103 472-595 13-115 (177)
253 4b4t_R RPN7, 26S proteasome re 85.1 3.5 0.00012 43.5 10.3 104 463-566 130-239 (429)
254 4b4t_P 26S proteasome regulato 83.5 47 0.0016 34.8 19.3 104 428-531 139-248 (445)
255 1zbp_A Hypothetical protein VP 83.3 2.8 9.5E-05 41.2 7.7 69 508-576 4-72 (273)
256 4b4t_P 26S proteasome regulato 82.6 19 0.00064 38.0 14.7 103 463-565 136-248 (445)
257 1wy6_A Hypothetical protein ST 80.2 30 0.001 30.4 16.7 57 541-597 97-153 (172)
258 4b4t_S RPN3, 26S proteasome re 79.6 4.3 0.00015 43.8 8.2 104 463-568 180-303 (523)
259 1ya0_A SMG-7 transcript varian 75.9 13 0.00043 40.0 10.7 73 470-545 158-230 (497)
260 4b4t_R RPN7, 26S proteasome re 75.5 8.9 0.0003 40.3 9.4 106 427-535 132-242 (429)
261 3spa_A Mtrpol, DNA-directed RN 72.6 41 0.0014 39.4 14.3 100 429-531 130-231 (1134)
262 4b4t_S RPN3, 26S proteasome re 72.1 5.9 0.0002 42.6 6.8 102 500-603 180-304 (523)
263 1wy6_A Hypothetical protein ST 69.1 18 0.00063 31.8 7.9 57 509-565 99-155 (172)
264 2wpv_A GET4, UPF0363 protein Y 67.3 1E+02 0.0035 30.7 14.5 39 555-593 113-158 (312)
265 1ya0_A SMG-7 transcript varian 67.3 14 0.0005 39.6 8.7 79 502-580 153-231 (497)
266 3lpz_A GET4 (YOR164C homolog); 54.3 1.8E+02 0.0063 29.2 16.6 26 567-592 134-159 (336)
267 3kae_A CDC27, possible protein 53.9 1.3E+02 0.0045 27.4 15.7 85 511-600 43-145 (242)
268 4fhn_B Nucleoporin NUP120; pro 51.6 3.6E+02 0.012 31.8 21.7 134 419-553 835-989 (1139)
269 3mv2_A Coatomer subunit alpha; 48.3 1.3E+02 0.0044 30.2 11.1 51 537-602 209-259 (325)
270 4fhn_B Nucleoporin NUP120; pro 48.0 60 0.002 38.6 10.4 114 473-593 821-962 (1139)
271 1qsa_A Protein (soluble lytic 46.5 3.2E+02 0.011 29.8 25.9 80 517-597 268-347 (618)
272 3kae_A CDC27, possible protein 45.6 1.8E+02 0.0061 26.5 16.9 130 472-601 70-240 (242)
273 3ax2_A Mitochondrial import re 43.4 52 0.0018 25.3 5.8 29 506-534 22-50 (73)
274 2ijq_A Hypothetical protein; s 42.6 90 0.0031 27.9 8.2 53 510-562 41-102 (161)
275 4g3b_A Alpha4F3D; alpha helix, 42.0 38 0.0013 19.6 3.5 19 101-119 3-21 (26)
276 3mkr_B Coatomer subunit alpha; 39.1 2.5E+02 0.0086 28.0 11.6 50 537-601 200-249 (320)
277 2w2u_A Hypothetical P60 katani 37.9 1E+02 0.0034 24.2 6.9 42 267-330 16-57 (83)
278 3ax2_A Mitochondrial import re 37.8 71 0.0024 24.5 5.8 37 539-575 21-57 (73)
279 2v6y_A AAA family ATPase, P60 37.1 1.1E+02 0.0037 23.9 7.0 42 267-330 8-49 (83)
280 1o9d_A 14-3-3-like protein C; 35.7 3.1E+02 0.011 26.4 18.1 47 551-597 151-206 (260)
281 2wpv_A GET4, UPF0363 protein Y 35.6 3.4E+02 0.012 26.9 15.8 29 569-597 187-216 (312)
282 2npm_A 14-3-3 domain containin 35.1 3.2E+02 0.011 26.4 16.6 47 551-597 172-226 (260)
283 3uzd_A 14-3-3 protein gamma; s 32.9 3.3E+02 0.011 26.0 18.1 47 551-597 147-202 (248)
284 2br9_A 14-3-3E, 14-3-3 protein 32.7 3.3E+02 0.011 25.8 18.2 47 551-597 146-201 (234)
285 2ijq_A Hypothetical protein; s 31.0 2E+02 0.0067 25.6 8.5 60 470-529 38-103 (161)
286 1mke_A WIP - N-WAsp, fusion pr 30.0 27 0.00092 31.1 2.5 23 97-119 125-147 (152)
287 3twe_A Alpha4H; unknown functi 29.1 81 0.0028 18.4 3.5 15 100-114 2-16 (27)
288 1om2_A Protein (mitochondrial 28.8 63 0.0022 26.2 4.3 30 505-534 24-53 (95)
289 3iqu_A 14-3-3 protein sigma; s 28.8 3.8E+02 0.013 25.4 17.0 47 551-597 149-204 (236)
290 2o8p_A 14-3-3 domain containin 28.3 3.8E+02 0.013 25.2 17.1 52 547-598 137-197 (227)
291 2cpt_A SKD1 protein, vacuolar 27.3 2.3E+02 0.0079 23.6 7.9 41 267-329 15-55 (117)
292 4a5x_A MITD1, MIT domain-conta 26.9 2.3E+02 0.0078 22.2 7.6 19 296-314 27-45 (86)
293 1g1e_B SIN3A; four-helix bundl 26.1 1.9E+02 0.0064 23.0 6.7 60 517-576 10-83 (89)
294 3t5x_A PCI domain-containing p 24.3 1.4E+02 0.0049 27.5 6.7 87 500-594 13-104 (203)
295 1om2_A Protein (mitochondrial 24.2 93 0.0032 25.2 4.5 28 541-568 26-53 (95)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=2.1e-30 Score=274.01 Aligned_cols=335 Identities=16% Similarity=0.104 Sum_probs=300.1
Q ss_pred hhhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcC----chhHHH
Q 007407 261 NSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLAR----PDEAKS 336 (605)
Q Consensus 261 ~~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~----~~~Ak~ 336 (605)
..+.|++++|..+|.++++.+|+++..+..++.++...|+++.|..+++++++.+|.+..+|...+.++. .+.|..
T Consensus 9 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 88 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIE 88 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHH
Confidence 4567888888888888888888888888888888888888888888888888888888888877776542 257778
Q ss_pred HHHHHHhhCCCc-----------------HHHHHHHHHHHHhCCCcHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCC
Q 007407 337 VVAKGVRQIPKS-----------------ANKIRALRMALDEIPDSVRLWKALVE----ISSEEEARILLHRAVECCPLD 395 (605)
Q Consensus 337 ~l~~al~~~P~s-----------------~~a~~vl~kAle~~P~~~~lw~~l~~----le~~e~A~~~l~rAl~~~P~~ 395 (605)
.|.+++...|++ ..|...|+++++..|++...|..++. ++++++|+.+|.++++..|.+
T Consensus 89 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 168 (388)
T 1w3b_A 89 HYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF 168 (388)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 888888888876 45778899999999999988877654 458999999999999999999
Q ss_pred HHHHHHHHHh----hcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHH
Q 007407 396 VELWLALVRL----ETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKE 470 (605)
Q Consensus 396 ~~lw~aLa~l----e~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~ 470 (605)
...|..++.+ ++++.|...|+++++..|.+..+|..++.+. ..|++++|...|++++...|. +...|...
T Consensus 169 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~l 243 (388)
T 1w3b_A 169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-----HAVVHGNL 243 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-----CHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-----CHHHHHHH
Confidence 9999988764 4789999999999999999999999999877 899999999999999998775 46789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 007407 471 AEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGC 550 (605)
Q Consensus 471 A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~ 550 (605)
+..+...|.++.|...+++++..+|. ...+|..++..+...|++++|+.+|+++++.+|++..+|..++.++...|+
T Consensus 244 ~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 320 (388)
T 1w3b_A 244 ACVYYEQGLIDLAIDTYRRAIELQPH---FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGN 320 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCSS---CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999988 788899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCC
Q 007407 551 RESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSE 603 (605)
Q Consensus 551 ~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~ 603 (605)
+++|+.+|+++++.+|++..+|..+|.++.+.|++++|...|+++++.+|++.
T Consensus 321 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~ 373 (388)
T 1w3b_A 321 IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA 373 (388)
T ss_dssp HHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Confidence 99999999999999999999999999999999999999999999999999864
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=5.9e-29 Score=262.83 Aligned_cols=317 Identities=13% Similarity=0.102 Sum_probs=293.3
Q ss_pred chhhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhc----CchhHH
Q 007407 260 TNSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLA----RPDEAK 335 (605)
Q Consensus 260 ~~~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~----~~~~Ak 335 (605)
.....|++++|..+++.+++.+|.++.+|..++.++...|++++|...++++++..|++.+.|...+.+. ..+.|.
T Consensus 42 ~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 121 (388)
T 1w3b_A 42 IHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAV 121 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHH
Confidence 3568899999999999999999999999999999999999999999999999999999999998887654 336899
Q ss_pred HHHHHHHhhCCCc-----------------HHHHHHHHHHHHhCCCcHHHHHHHHHh----CCHHHHHHHHHHHHHhCCC
Q 007407 336 SVVAKGVRQIPKS-----------------ANKIRALRMALDEIPDSVRLWKALVEI----SSEEEARILLHRAVECCPL 394 (605)
Q Consensus 336 ~~l~~al~~~P~s-----------------~~a~~vl~kAle~~P~~~~lw~~l~~l----e~~e~A~~~l~rAl~~~P~ 394 (605)
..+.+++...|++ ..|...|+++++..|++...|..++.. +++++|+..|+++++..|.
T Consensus 122 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 201 (388)
T 1w3b_A 122 QAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN 201 (388)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 9999999999987 568899999999999999999877543 4889999999999999999
Q ss_pred CHHHHHHHHHh----hcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHH
Q 007407 395 DVELWLALVRL----ETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMK 469 (605)
Q Consensus 395 ~~~lw~aLa~l----e~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~ 469 (605)
+..+|..++.+ +.+++|...|++++...|.++.+|..++.+. ..|++++|...|+++++..|. ....|..
T Consensus 202 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~ 276 (388)
T 1w3b_A 202 FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-----FPDAYCN 276 (388)
T ss_dssp CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-----CHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----CHHHHHH
Confidence 99999988765 4789999999999999999999999999877 999999999999999998765 4678999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 007407 470 EAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYG 549 (605)
Q Consensus 470 ~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g 549 (605)
.+..+...|++++|...|++++...|. +..+|..++..+...|++++|+..|+++++.+|++..+|..++.++...|
T Consensus 277 l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 353 (388)
T 1w3b_A 277 LANALKEKGSVAEAEDCYNTALRLCPT---HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG 353 (388)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 999999999999999999999999988 78899999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 007407 550 CRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGD 584 (605)
Q Consensus 550 ~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd 584 (605)
++++|+..|+++++..|+++.+|..+|.++...|+
T Consensus 354 ~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 354 KLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp CCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999999999999999999998877664
No 3
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.97 E-value=5.8e-29 Score=275.55 Aligned_cols=331 Identities=15% Similarity=0.123 Sum_probs=243.9
Q ss_pred hhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhc-----CchhHH-
Q 007407 262 SELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLA-----RPDEAK- 335 (605)
Q Consensus 262 ~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~-----~~~~Ak- 335 (605)
.+.|++++|+.+|+++++.+|.++..|+.++.++...|+++.|+.+|++++..+| +.++|+.++++. ..+.|+
T Consensus 23 ~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~~~~~~~~~~~~~~a~~ 101 (530)
T 2ooe_A 23 AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCYLSYVRETKGKLPSYKE 101 (530)
T ss_dssp HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHHHHHHHHHTTTSTTHHH
T ss_pred HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHccchhhHHH
Confidence 4578999999999999999999999999999999999999999999999999999 788999888532 112232
Q ss_pred ---HHHHHHHhhCC---Cc--------------------------HHHHHHHHHHHHhCCCc------------------
Q 007407 336 ---SVVAKGVRQIP---KS--------------------------ANKIRALRMALDEIPDS------------------ 365 (605)
Q Consensus 336 ---~~l~~al~~~P---~s--------------------------~~a~~vl~kAle~~P~~------------------ 365 (605)
.+|.+++...+ .+ ..++.+|++++. .|.+
T Consensus 102 ~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~ 180 (530)
T 2ooe_A 102 KMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINI 180 (530)
T ss_dssp HHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhch
Confidence 35555554322 21 134555666655 4432
Q ss_pred -------------------------------------------------HHHHHHHHHhCC------------HHHHHHH
Q 007407 366 -------------------------------------------------VRLWKALVEISS------------EEEARIL 384 (605)
Q Consensus 366 -------------------------------------------------~~lw~~l~~le~------------~e~A~~~ 384 (605)
..+|..++.++. ...|+.+
T Consensus 181 ~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~ 260 (530)
T 2ooe_A 181 HLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFA 260 (530)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHH
Confidence 234444433320 1245667
Q ss_pred HHHHHHhCCCCHHHHHHHHHhh-----------cHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHH-HcCCHHHH
Q 007407 385 LHRAVECCPLDVELWLALVRLE-----------TYG-------VARSVLNKARK-KLPKERAIWIAAAKLE-ANGNTSMV 444 (605)
Q Consensus 385 l~rAl~~~P~~~~lw~aLa~le-----------~~e-------~A~~vL~~al~-~~p~~~~iwi~~a~Le-~~g~~~~a 444 (605)
|++++..+|.++++|+.++.+. +++ .|+.+|++|++ .+|.+..+|+.++.++ ..|++++|
T Consensus 261 y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A 340 (530)
T 2ooe_A 261 YEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKV 340 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHH
Confidence 8888888888888888776542 233 78888888886 6788888888888777 78888888
Q ss_pred HHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHH-HHcCCHHHHHHH
Q 007407 445 GKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEEC-KKRGSIETARAI 523 (605)
Q Consensus 445 ~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~-~~~g~~~~A~~i 523 (605)
..+|+++++..|.+ ....|..++..+.+.|..+.|+.+|++++...|. ....|+..+.+. ...|++++|+.+
T Consensus 341 ~~~~~~al~~~p~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~---~~~~~~~~a~~~~~~~~~~~~A~~~ 413 (530)
T 2ooe_A 341 HSIYNRLLAIEDID----PTLVYIQYMKFARRAEGIKSGRMIFKKAREDART---RHHVYVTAALMEYYCSKDKSVAFKI 413 (530)
T ss_dssp HHHHHHHHHSSSSC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC---CTHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHhCccccC----chHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC---chHHHHHHHHHHHHHcCChhHHHHH
Confidence 88888888765432 1247888888777778888888888888887665 444455444432 347888888888
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHHC
Q 007407 524 FSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAE----VLWLMGAKEKWLAGDVPATRDILQEAYAAI 599 (605)
Q Consensus 524 ~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~----~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~ 599 (605)
|+++++.+|+++.+|..++.++...|+.++|+.+|++|+..+|.++ .+|..++.++...|+.+.+..++.++++..
T Consensus 414 ~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 414 FELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 8888888888888888888888888888888888888888776544 388888888878888888888888888888
Q ss_pred CC
Q 007407 600 PN 601 (605)
Q Consensus 600 P~ 601 (605)
|+
T Consensus 494 p~ 495 (530)
T 2ooe_A 494 RE 495 (530)
T ss_dssp HH
T ss_pred ch
Confidence 74
No 4
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.97 E-value=5.6e-28 Score=267.65 Aligned_cols=321 Identities=15% Similarity=0.165 Sum_probs=272.3
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhc----CchhHHHHHHHHHhhCCCc
Q 007407 273 IVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLA----RPDEAKSVVAKGVRQIPKS 348 (605)
Q Consensus 273 ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~----~~~~Ak~~l~~al~~~P~s 348 (605)
+|+++++.+|.+...|+.++++ ...|+++.|+.+++++++.+|.+..+|+.++.++ ..+.|+.+|.+++...|..
T Consensus 1 ~le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~ 79 (530)
T 2ooe_A 1 MAEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHI 79 (530)
T ss_dssp CHHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCH
T ss_pred ChhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh
Confidence 4788999999999999999995 6789999999999999999999999999999886 3368999999999999953
Q ss_pred -----------------HH----HHHHHHHHHHh---CCCcHHHHHHHHHhC-------------CHHHHHHHHHHHHHh
Q 007407 349 -----------------AN----KIRALRMALDE---IPDSVRLWKALVEIS-------------SEEEARILLHRAVEC 391 (605)
Q Consensus 349 -----------------~~----a~~vl~kAle~---~P~~~~lw~~l~~le-------------~~e~A~~~l~rAl~~ 391 (605)
.. .+++|++++.. .|.+..+|..++.++ +.+.|+.+|+++++
T Consensus 80 ~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~- 158 (530)
T 2ooe_A 80 DLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV- 158 (530)
T ss_dssp HHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-
Confidence 11 23478888876 457889999887653 46899999999998
Q ss_pred CCCCH--HHHHHHHH-----------------------------------------------------------------
Q 007407 392 CPLDV--ELWLALVR----------------------------------------------------------------- 404 (605)
Q Consensus 392 ~P~~~--~lw~aLa~----------------------------------------------------------------- 404 (605)
.|.+. .+|..+..
T Consensus 159 ~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~ 238 (530)
T 2ooe_A 159 NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQ 238 (530)
T ss_dssp SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHH
Confidence 67642 34443222
Q ss_pred hhc------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHH-H-------cCCHH-------HHHHHHHHHHH-Hhc
Q 007407 405 LET------------YGVARSVLNKARKKLPKERAIWIAAAKLE-A-------NGNTS-------MVGKIIERGIR-ALQ 456 (605)
Q Consensus 405 le~------------~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~-------~g~~~-------~a~~i~~~al~-~~p 456 (605)
++. ...|..+|++++..+|.++.+|+.++.+. . .|+.+ +|..+|++|++ ..|
T Consensus 239 ~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p 318 (530)
T 2ooe_A 239 WEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK 318 (530)
T ss_dssp HHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCS
T ss_pred HHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCc
Confidence 110 01455689999999999999999999866 4 68876 89999999997 555
Q ss_pred cCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH
Q 007407 457 GEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKK-RTWVADVEECKKRGSIETARAIFSPACTVFLTKK 535 (605)
Q Consensus 457 ~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~-~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~ 535 (605)
. ....|..++..++..|+++.|+.+|++++...|. +. .+|+.++.++.+.|++++|+.+|++|++..|...
T Consensus 319 ~-----~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~ 390 (530)
T 2ooe_A 319 K-----NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI---DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRH 390 (530)
T ss_dssp S-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCT
T ss_pred c-----cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc---CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCch
Confidence 4 5789999999999999999999999999999887 43 5899999999999999999999999999999988
Q ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCC
Q 007407 536 NIWLKAAQLEK-SYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSE 603 (605)
Q Consensus 536 ~~w~~la~l~~-~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~ 603 (605)
.+|...+.++. ..|++++|+.+|++|++.+|+++.+|+.|+.+++..|++++|+.+|++|+..+|.++
T Consensus 391 ~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~ 459 (530)
T 2ooe_A 391 HVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 459 (530)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCG
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCH
Confidence 88888777754 589999999999999999999999999999999999999999999999999988765
No 5
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.96 E-value=3.7e-27 Score=267.50 Aligned_cols=351 Identities=11% Similarity=0.119 Sum_probs=282.7
Q ss_pred CchhHHhhhhhhcccchhhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcC---HHHHHHHHHHHHhhCC--CCH
Q 007407 245 DPSGYLTRMNDLKITTNSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANE---EAAARKLITKGCNMCP--KNE 319 (605)
Q Consensus 245 dp~~yl~~L~~~~~~~~~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~---~~~Ar~ll~~~l~~~P--~~~ 319 (605)
|...|+..+.. ....++++.+|.+|++++...|.....|+.++.++...++ ++.++.+|++++..+| .++
T Consensus 65 d~~~W~~yi~~-----~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv 139 (679)
T 4e6h_A 65 DIFLYVKLLKH-----HVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDL 139 (679)
T ss_dssp CHHHHHHHHHH-----HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCH
T ss_pred CHHHHHHHHHH-----HHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCH
Confidence 45566555532 3456789999999999999999999999999999999999 9999999999999994 789
Q ss_pred HHHHHHHhhcCc--------h----hHHHHHHHHHhh----CCCc--------------------------HHHHHHHHH
Q 007407 320 DVWLEACRLARP--------D----EAKSVVAKGVRQ----IPKS--------------------------ANKIRALRM 357 (605)
Q Consensus 320 ~lwle~a~L~~~--------~----~Ak~~l~~al~~----~P~s--------------------------~~a~~vl~k 357 (605)
++|+.++.+... + ..+.+|.+|+.. +|.+ ..++++|++
T Consensus 140 ~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~r 219 (679)
T 4e6h_A 140 SLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKT 219 (679)
T ss_dssp HHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHH
Confidence 999999865211 1 233677777764 3334 123455666
Q ss_pred HHHhCCC-------------------------------------------------------------------------
Q 007407 358 ALDEIPD------------------------------------------------------------------------- 364 (605)
Q Consensus 358 Ale~~P~------------------------------------------------------------------------- 364 (605)
+|. +|.
T Consensus 220 aL~-iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~ 298 (679)
T 4e6h_A 220 LLC-QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYD 298 (679)
T ss_dssp HTT-SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCC
T ss_pred HHh-CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhH
Confidence 553 332
Q ss_pred --cHHHHHHHHHhC--C---------HHHHHHHHHHHHHhCCCCHHHHHHHHHhh----cHHHHH-HHHHHHHHhCCCCH
Q 007407 365 --SVRLWKALVEIS--S---------EEEARILLHRAVECCPLDVELWLALVRLE----TYGVAR-SVLNKARKKLPKER 426 (605)
Q Consensus 365 --~~~lw~~l~~le--~---------~e~A~~~l~rAl~~~P~~~~lw~aLa~le----~~e~A~-~vL~~al~~~p~~~ 426 (605)
...+|..++.++ + .+..+.+|+++|..+|.+.++|+.++++. ..+.|+ .+|++|+..+|.+.
T Consensus 299 ~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~ 378 (679)
T 4e6h_A 299 VQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSA 378 (679)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCH
Confidence 124566666554 1 12345689999999999999999999875 346786 99999999999999
Q ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccC------ccc-----------ccHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007407 427 AIWIAAAKLE-ANGNTSMVGKIIERGIRALQGE------EVV-----------IDRDTWMKEAEVADRAGSVVTCVAIIT 488 (605)
Q Consensus 427 ~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~------~~~-----------~~~~~wl~~A~~~e~~g~~~~A~~i~~ 488 (605)
.+|+.++.++ ..|+++.|..+|++++..++.. ..+ ....+|+.++.+..+.|..+.|++++.
T Consensus 379 ~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~ 458 (679)
T 4e6h_A 379 VLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFG 458 (679)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999988 9999999999999999875310 001 124589999999999999999999999
Q ss_pred HHHHh-CCCchhhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 007407 489 NTIEI-GVDEEDKKRTWVADVEECKKRGS-IETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCP 566 (605)
Q Consensus 489 ~al~~-~p~~~~~~~~~~~~a~~~~~~g~-~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P 566 (605)
.++.. .+. ...+|+..|.+....++ ++.|+.+|+.+++.+|+++.+|..++.++...|+.+.|+.+|++|+..+|
T Consensus 459 ~A~~~~~~~---~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 459 KCRRLKKLV---TPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HHHHTGGGS---CTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred HHHHhcCCC---ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 99987 333 46778888888777654 89999999999999999999999999999999999999999999999998
Q ss_pred ---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCCC
Q 007407 567 ---QAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSEE 604 (605)
Q Consensus 567 ---~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~~ 604 (605)
+...+|..|..++.+.|+.+.+++++.++.+.+|+++.
T Consensus 536 ~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 536 DSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp STTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 46789999999999999999999999999999999864
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.96 E-value=5.6e-26 Score=253.03 Aligned_cols=332 Identities=13% Similarity=0.069 Sum_probs=291.0
Q ss_pred chhhhccHHHHHHHHHHHHHhCCCC-------------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHH
Q 007407 260 TNSELRDILKARKIVRAVTKNSPKK-------------------PLGWIQAARLEELANEEAAARKLITKGCNMCPKNED 320 (605)
Q Consensus 260 ~~~~~gd~~kAr~ll~~al~~~P~~-------------------~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~ 320 (605)
.+.+.|+++.|+.+|++ ..|.+ +..|..++..+...|+++.|+.+|+++++.+|.+..
T Consensus 159 ~~~~~g~~~~A~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 235 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGE---TNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYE 235 (597)
T ss_dssp HHHHTTCHHHHHHHHCS---SCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHhhHHHHHHHHhc---cCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhH
Confidence 46788999999999886 45554 788999999999999999999999999999999998
Q ss_pred HHHHHHhhcC--------------------------------------c----hhHHHHHHHHHhhCCCc----------
Q 007407 321 VWLEACRLAR--------------------------------------P----DEAKSVVAKGVRQIPKS---------- 348 (605)
Q Consensus 321 lwle~a~L~~--------------------------------------~----~~Ak~~l~~al~~~P~s---------- 348 (605)
+|..++.+.. . +.|..++.+++.. |.+
T Consensus 236 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~ 314 (597)
T 2xpi_A 236 AFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADT 314 (597)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHH
Confidence 8877654321 0 3455666666654 333
Q ss_pred -------HHHHHHHHHHHHhCCCcHHHHHHHH----HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh----hcHHHHHH
Q 007407 349 -------ANKIRALRMALDEIPDSVRLWKALV----EISSEEEARILLHRAVECCPLDVELWLALVRL----ETYGVARS 413 (605)
Q Consensus 349 -------~~a~~vl~kAle~~P~~~~lw~~l~----~le~~e~A~~~l~rAl~~~P~~~~lw~aLa~l----e~~e~A~~ 413 (605)
..|..+|+++++..|++...|..++ ..++.++|+.+++++++..|.+..+|..++.+ +++++|..
T Consensus 315 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 394 (597)
T 2xpi_A 315 LFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARR 394 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHH
Confidence 5688899999999999888776554 45688999999999999999999999888754 57999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007407 414 VLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIE 492 (605)
Q Consensus 414 vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~ 492 (605)
+|+++++..|.+..+|..++.+. ..|++++|..+|++++...|. +...|...+..+...|++++|..+|++++.
T Consensus 395 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (597)
T 2xpi_A 395 YFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-----THLPYLFLGMQHMQLGNILLANEYLQSSYA 469 (597)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-----CSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-----chHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999877 999999999999999988765 456899999999999999999999999999
Q ss_pred hCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------cCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 007407 493 IGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTV------FLTK-KNIWLKAAQLEKSYGCRESLIALLRKAVTYC 565 (605)
Q Consensus 493 ~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~------~P~~-~~~w~~la~l~~~~g~~e~A~~~lekAl~~~ 565 (605)
..|. +..+|...+..+...|++++|..+|+++++. .|+. ..+|..++.++...|++++|+.+|++++...
T Consensus 470 ~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 470 LFQY---DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp HCCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hCCC---ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 9988 7888999999999999999999999999998 5664 7899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCC
Q 007407 566 PQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSE 603 (605)
Q Consensus 566 P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~ 603 (605)
|+++.+|..++.++...|++++|..+|+++++.+|+++
T Consensus 547 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 584 (597)
T 2xpi_A 547 TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEI 584 (597)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh
Confidence 99999999999999999999999999999999999875
No 7
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.96 E-value=1.1e-26 Score=254.71 Aligned_cols=245 Identities=13% Similarity=0.054 Sum_probs=215.4
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHH-----------HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh----hcHHHHHHH
Q 007407 350 NKIRALRMALDEIPDSVRLWKAL-----------VEISSEEEARILLHRAVECCPLDVELWLALVRL----ETYGVARSV 414 (605)
Q Consensus 350 ~a~~vl~kAle~~P~~~~lw~~l-----------~~le~~e~A~~~l~rAl~~~P~~~~lw~aLa~l----e~~e~A~~v 414 (605)
.+..+|+++++..|++..+|..+ ...+++++|+.+|+++++..|. ..+|..++.+ ++++.|...
T Consensus 220 ~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~ 298 (537)
T 3fp2_A 220 KSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKF 298 (537)
T ss_dssp HHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHH
T ss_pred HHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHH
Confidence 46678888999999987765432 2234889999999999999999 8888888765 478999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007407 415 LNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEI 493 (605)
Q Consensus 415 L~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~ 493 (605)
|+++++..|.++.+|..++.+. ..|++++|...|++++...|.. ...|...+..+...|+++.|..++++++..
T Consensus 299 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 373 (537)
T 3fp2_A 299 FQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN-----VYPYIQLACLLYKQGKFTESEAFFNETKLK 373 (537)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----SHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999887 9999999999999999987763 468999999999999999999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHc----------CCHHHHHHH
Q 007407 494 GVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNI------WLKAAQLEKSY----------GCRESLIAL 557 (605)
Q Consensus 494 ~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~------w~~la~l~~~~----------g~~e~A~~~ 557 (605)
.|. +..+|..++..+...|++++|+..|+++++..|++..+ +..++.++... |++++|+..
T Consensus 374 ~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~ 450 (537)
T 3fp2_A 374 FPT---LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKL 450 (537)
T ss_dssp CTT---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHH
T ss_pred CCC---ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHH
Confidence 988 77889999999999999999999999999998876543 55567888888 999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCC
Q 007407 558 LRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSE 603 (605)
Q Consensus 558 lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~ 603 (605)
|++++..+|+++.+|..+|.++...|++++|...|+++++.+|+++
T Consensus 451 ~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 496 (537)
T 3fp2_A 451 LTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMD 496 (537)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 9999999999999999999999999999999999999999999864
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=6.8e-27 Score=254.40 Aligned_cols=246 Identities=13% Similarity=0.046 Sum_probs=220.5
Q ss_pred HHHHHHHHHHHH-----h--CCC-------cHHHHHHHH----HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh----h
Q 007407 349 ANKIRALRMALD-----E--IPD-------SVRLWKALV----EISSEEEARILLHRAVECCPLDVELWLALVRL----E 406 (605)
Q Consensus 349 ~~a~~vl~kAle-----~--~P~-------~~~lw~~l~----~le~~e~A~~~l~rAl~~~P~~~~lw~aLa~l----e 406 (605)
..|...|+++++ . .|+ +...|..++ ..+++++|+.+|+++++..|. ..+|..++.+ +
T Consensus 206 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~ 284 (514)
T 2gw1_A 206 DKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRN 284 (514)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCC
Confidence 567778888888 4 444 445565544 345899999999999999999 8888877764 4
Q ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHH
Q 007407 407 TYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVA 485 (605)
Q Consensus 407 ~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~ 485 (605)
+++.|...++++++..|.+..+|..++.+. ..|++++|...|+++++..|. ....|...+..+...|+++.|..
T Consensus 285 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~ 359 (514)
T 2gw1_A 285 DSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-----NIFPYIQLACLAYRENKFDDCET 359 (514)
T ss_dssp CCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-----CSHHHHHHHHHTTTTTCHHHHHH
T ss_pred CHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-----hHHHHHHHHHHHHHcCCHHHHHH
Confidence 789999999999999999999999999887 999999999999999998776 34688999999999999999999
Q ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH------HHHHHHHHHHH---cCCHHHHHH
Q 007407 486 IITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKN------IWLKAAQLEKS---YGCRESLIA 556 (605)
Q Consensus 486 i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~------~w~~la~l~~~---~g~~e~A~~ 556 (605)
.++.++...|. +..+|...+..+...|++++|..+|++++...|++.. +|..+|.++.. .|++++|..
T Consensus 360 ~~~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~ 436 (514)
T 2gw1_A 360 LFSEAKRKFPE---APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATN 436 (514)
T ss_dssp HHHHHHHHSTT---CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHH
T ss_pred HHHHHHHHccc---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHH
Confidence 99999999988 6788999999999999999999999999999998855 99999999999 999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCC
Q 007407 557 LLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSE 603 (605)
Q Consensus 557 ~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~ 603 (605)
.|++++..+|+++.+|..+|.++...|++++|...|+++++.+|+++
T Consensus 437 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 483 (514)
T 2gw1_A 437 LLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTME 483 (514)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccH
Confidence 99999999999999999999999999999999999999999999865
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.96 E-value=1e-25 Score=241.64 Aligned_cols=339 Identities=14% Similarity=0.029 Sum_probs=279.2
Q ss_pred cchhhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcC----chhH
Q 007407 259 TTNSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLAR----PDEA 334 (605)
Q Consensus 259 ~~~~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~----~~~A 334 (605)
..+...|++.+|..+|+++++.+|.++.+|..++.++...|+++.|..+++++++.+|.+..+|..++.++. .+.|
T Consensus 34 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 113 (450)
T 2y4t_A 34 KKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEA 113 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 346789999999999999999999999999999999999999999999999999999999999998877642 2456
Q ss_pred HHHHHHHHhhCCCcH---HHHHHHHHHHHhCCCcHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh----hc
Q 007407 335 KSVVAKGVRQIPKSA---NKIRALRMALDEIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALVRL----ET 407 (605)
Q Consensus 335 k~~l~~al~~~P~s~---~a~~vl~kAle~~P~~~~lw~~l~~le~~e~A~~~l~rAl~~~P~~~~lw~aLa~l----e~ 407 (605)
...+.+++...|.+. .+...+-...... ....+-..+...+++++|+.+|+++++..|.+..+|..++.+ ++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 192 (450)
T 2y4t_A 114 EDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-RLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGE 192 (450)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCC
Confidence 666666665555543 2221111110000 000111123455689999999999999999999999887754 57
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHH------------HHHHHH
Q 007407 408 YGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWM------------KEAEVA 474 (605)
Q Consensus 408 ~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl------------~~A~~~ 474 (605)
+++|..+|+++++..|.++.+|..++.+. ..|++++|..+|++++...|.. ...|. ..+..+
T Consensus 193 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-----~~~~~~~~~~~~~~~~~~~~~~~ 267 (450)
T 2y4t_A 193 PRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDH-----KRCFAHYKQVKKLNKLIESAEEL 267 (450)
T ss_dssp GGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCh-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888 9999999999999999887764 33343 338889
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCchh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHH
Q 007407 475 DRAGSVVTCVAIITNTIEIGVDEED-KKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRES 553 (605)
Q Consensus 475 e~~g~~~~A~~i~~~al~~~p~~~~-~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~ 553 (605)
...|.+++|...|++++...|.++. ....|...+..+...|++++|+..|++++..+|++..+|..+|.++...|++++
T Consensus 268 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 347 (450)
T 2y4t_A 268 IRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDE 347 (450)
T ss_dssp HHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHH
Confidence 9999999999999999999988332 145788889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHH------------HHcC-----ChHHHHHHHHH-HHHHCCCCC
Q 007407 554 LIALLRKAVTYCPQAEVLWLMGAKEK------------WLAG-----DVPATRDILQE-AYAAIPNSE 603 (605)
Q Consensus 554 A~~~lekAl~~~P~~~~l~l~~a~~~------------~~~g-----d~~~Ar~il~k-Al~~~P~~~ 603 (605)
|...|+++++.+|+++.+|..++.+. ...| +.+++++.|.+ +++.+|++.
T Consensus 348 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~ 415 (450)
T 2y4t_A 348 AIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNF 415 (450)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGC
T ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999998542 2234 67788999997 899999763
No 10
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.95 E-value=3.4e-25 Score=228.40 Aligned_cols=302 Identities=15% Similarity=0.050 Sum_probs=205.9
Q ss_pred chhhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcCc----hhHH
Q 007407 260 TNSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLARP----DEAK 335 (605)
Q Consensus 260 ~~~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~~----~~Ak 335 (605)
.....|++++|..+|+++++.+|+++.+|..++.++...|+++.|...++++++.+|.+..+|...+.++.. +.|.
T Consensus 12 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 91 (359)
T 3ieg_A 12 KLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAE 91 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHH
Confidence 357889999999999999999999999999999999999999999999999999999999999888776532 3444
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHhCCCcHHHHHHH----------------HHhCCHHHHHHHHHHHHHhCCCCHHHH
Q 007407 336 SVVAKGVRQIPKSANKIRALRMALDEIPDSVRLWKAL----------------VEISSEEEARILLHRAVECCPLDVELW 399 (605)
Q Consensus 336 ~~l~~al~~~P~s~~a~~vl~kAle~~P~~~~lw~~l----------------~~le~~e~A~~~l~rAl~~~P~~~~lw 399 (605)
..+.+++...|... ++...|..+ ...+++++|+.+|+++++..|.+..+|
T Consensus 92 ~~~~~~~~~~~~~~--------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 157 (359)
T 3ieg_A 92 DDFKKVLKSNPSEQ--------------EEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELR 157 (359)
T ss_dssp HHHHHHHTSCCCHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHhcCCccc--------------ChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHH
Confidence 45544444444110 444444332 234466777777777777777777766
Q ss_pred HHHHHh----hcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHH------
Q 007407 400 LALVRL----ETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWM------ 468 (605)
Q Consensus 400 ~aLa~l----e~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl------ 468 (605)
..++.+ ++++.|...++++++..|.++.+|..++.+. ..|++++|...|+++++..|.. ...|.
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~~~~~~ 232 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDH-----KRCFAHYKQVK 232 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc-----hHHHHHHHHHH
Confidence 655543 4567777777777777777777777777665 6677777777777777666543 22232
Q ss_pred ------HHHHHHHHcCCHHHHHHHHHHHHHhCCCchh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 007407 469 ------KEAEVADRAGSVVTCVAIITNTIEIGVDEED-KKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKA 541 (605)
Q Consensus 469 ------~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~-~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~l 541 (605)
..|..+...|++++|...+++++...|+++. ....|...+..+...|++++|..+|+++++.+|++..+|..+
T Consensus 233 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 312 (359)
T 3ieg_A 233 KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDR 312 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 1255566666666666666666666665221 113344556666666666666666666666666666666666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007407 542 AQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKW 580 (605)
Q Consensus 542 a~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~ 580 (605)
|.++...|++++|...|+++++.+|+++.++..+++++.
T Consensus 313 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 313 AEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 666666666666666666666666666666666655543
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=4.9e-25 Score=236.41 Aligned_cols=315 Identities=11% Similarity=0.019 Sum_probs=265.5
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcCchhHHHHHHHHHhhCCC
Q 007407 268 LKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLARPDEAKSVVAKGVRQIPK 347 (605)
Q Consensus 268 ~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~~~~Ak~~l~~al~~~P~ 347 (605)
..+...+.+++..+|.++..|+..+..+...|+++.|..++++++..+|.+..+|...+.++... ..
T Consensus 9 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~-------------g~ 75 (450)
T 2y4t_A 9 SGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAM-------------GK 75 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-------------TC
T ss_pred ccccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHC-------------CC
Confidence 34556777888999999999999999999999999999999999999999999998887654210 01
Q ss_pred cHHHHHHHHHHHHhCCCcHHHHHHHH----HhCCHHHHHHHHHHHHHhCCCCH---HHHHHHHH----------------
Q 007407 348 SANKIRALRMALDEIPDSVRLWKALV----EISSEEEARILLHRAVECCPLDV---ELWLALVR---------------- 404 (605)
Q Consensus 348 s~~a~~vl~kAle~~P~~~~lw~~l~----~le~~e~A~~~l~rAl~~~P~~~---~lw~aLa~---------------- 404 (605)
...|...|+++++..|++...|..++ ..+++++|+.+|+++++..|.+. ..|..++.
T Consensus 76 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 155 (450)
T 2y4t_A 76 SKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFG 155 (450)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13345667777778888888777654 45689999999999999999998 77765532
Q ss_pred hhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHH
Q 007407 405 LETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTC 483 (605)
Q Consensus 405 le~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A 483 (605)
.++++.|...|+++++..|.+..+|..++.+. ..|++++|..+|+++++..|. +...|...+..+...|+++.|
T Consensus 156 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A 230 (450)
T 2y4t_A 156 SGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKND-----NTEAFYKISTLYYQLGDHELS 230 (450)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-----CHHHHHHHHHHHHHTTCHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHH
Confidence 34789999999999999999999999999887 999999999999999998775 567899999999999999999
Q ss_pred HHHHHHHHHhCCCchhhHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhcCCCHH----HHHHHHHHHHH
Q 007407 484 VAIITNTIEIGVDEEDKKRTWVAD------------VEECKKRGSIETARAIFSPACTVFLTKKN----IWLKAAQLEKS 547 (605)
Q Consensus 484 ~~i~~~al~~~p~~~~~~~~~~~~------------a~~~~~~g~~~~A~~i~~~al~~~P~~~~----~w~~la~l~~~ 547 (605)
...+++++...|+ +...|..+ +..+...|++++|+.+|+++++..|++.. +|..++.++..
T Consensus 231 ~~~~~~~~~~~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~ 307 (450)
T 2y4t_A 231 LSEVRECLKLDQD---HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSK 307 (450)
T ss_dssp HHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCC---hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH
Confidence 9999999999988 44554443 88999999999999999999999999854 78889999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCC
Q 007407 548 YGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSE 603 (605)
Q Consensus 548 ~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~ 603 (605)
.|++++|+..|++++..+|+++.+|..+|.++...|++++|...|+++++.+|++.
T Consensus 308 ~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 363 (450)
T 2y4t_A 308 DEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQ 363 (450)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCH
T ss_pred CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchH
Confidence 99999999999999999999999999999999999999999999999999999875
No 12
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.95 E-value=3.1e-25 Score=251.72 Aligned_cols=326 Identities=14% Similarity=0.199 Sum_probs=271.9
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcC-------chhHHHHHHHHH
Q 007407 270 ARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLAR-------PDEAKSVVAKGV 342 (605)
Q Consensus 270 Ar~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~-------~~~Ak~~l~~al 342 (605)
-+..|+..+..||.+...|+.++..+...+.+..|+.++++++..+|.+..+|+.++.++. .+.+..+|.+++
T Consensus 51 ~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal 130 (679)
T 4e6h_A 51 VIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCL 130 (679)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHH
Confidence 3457788999999999999999999999999999999999999999999999999998752 346788999999
Q ss_pred hhCC--Cc---------------------HH----HHHHHHHHHHh----CCCcHHHHHHHHHhC-------------CH
Q 007407 343 RQIP--KS---------------------AN----KIRALRMALDE----IPDSVRLWKALVEIS-------------SE 378 (605)
Q Consensus 343 ~~~P--~s---------------------~~----a~~vl~kAle~----~P~~~~lw~~l~~le-------------~~ 378 (605)
...| .+ .. .+++|++|++. +|.+..+|..+++++ +.
T Consensus 131 ~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~ 210 (679)
T 4e6h_A 131 SKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRV 210 (679)
T ss_dssp CSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHH
Confidence 9983 23 01 23678888875 567889999998753 23
Q ss_pred HHHHHHHHHHHHhCCCC--HHHH---------------------------------------------------------
Q 007407 379 EEARILLHRAVECCPLD--VELW--------------------------------------------------------- 399 (605)
Q Consensus 379 e~A~~~l~rAl~~~P~~--~~lw--------------------------------------------------------- 399 (605)
+.++.+|.+++. +|.. ..+|
T Consensus 211 ~~~R~iy~raL~-iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~ 289 (679)
T 4e6h_A 211 QYIRKLYKTLLC-QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATES 289 (679)
T ss_dssp HHHHHHHHHHTT-SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTT
T ss_pred HHHHHHHHHHHh-CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhc
Confidence 678889999984 5532 1233
Q ss_pred ----------------HHHHHhhc-----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHH-HHHHH
Q 007407 400 ----------------LALVRLET-----------YGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVG-KIIER 450 (605)
Q Consensus 400 ----------------~aLa~le~-----------~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~-~i~~~ 450 (605)
..++.++. ...++.+|++++..+|..+++|+.+++++ ..|+.+.|. .+|++
T Consensus 290 ~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~r 369 (679)
T 4e6h_A 290 NLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKL 369 (679)
T ss_dssp TSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHH
T ss_pred cCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 33333321 12245689999999999999999999987 888888896 99999
Q ss_pred HHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------CCc--------hhhHHHHHHHHHHH
Q 007407 451 GIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIG-----------VDE--------EDKKRTWVADVEEC 511 (605)
Q Consensus 451 al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~-----------p~~--------~~~~~~~~~~a~~~ 511 (605)
|+..+|. +..+|+.+|...+..|+++.|+.+|++++... |.. .....+|+.++.++
T Consensus 370 Ai~~~P~-----s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~e 444 (679)
T 4e6h_A 370 GQQCIPN-----SAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTM 444 (679)
T ss_dssp HHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCC-----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHH
Confidence 9999886 46789999999999999999999999999752 321 01456899999999
Q ss_pred HHcCCHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 007407 512 KKRGSIETARAIFSPACTV-FLTKKNIWLKAAQLEKSYGC-RESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATR 589 (605)
Q Consensus 512 ~~~g~~~~A~~i~~~al~~-~P~~~~~w~~la~l~~~~g~-~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar 589 (605)
.+.|.++.||.+|.+|++. .+....+|...|.++...++ .+.|+++|+++++.+|+++.+|+.|+.+++..|+++.||
T Consensus 445 rR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR 524 (679)
T 4e6h_A 445 KRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVK 524 (679)
T ss_dssp HHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHH
Confidence 9999999999999999998 45567899999999998765 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCC
Q 007407 590 DILQEAYAAIPN 601 (605)
Q Consensus 590 ~il~kAl~~~P~ 601 (605)
.+|++|+...|+
T Consensus 525 ~lferal~~~~~ 536 (679)
T 4e6h_A 525 SLFESSIDKISD 536 (679)
T ss_dssp HHHHHHTTTSSS
T ss_pred HHHHHHHHhcCC
Confidence 999999999884
No 13
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.94 E-value=7.8e-25 Score=243.78 Aligned_cols=332 Identities=11% Similarity=0.039 Sum_probs=288.1
Q ss_pred cchhhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCC-------------------H
Q 007407 259 TTNSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKN-------------------E 319 (605)
Q Consensus 259 ~~~~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~-------------------~ 319 (605)
..+...|++.+|+.+|++++.. |.++..|..++.++...|+++.|+.+|++ ..|.+ .
T Consensus 125 ~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (597)
T 2xpi_A 125 QVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFCLVKLYDWQGALNLLGE---TNPFRKDEKNANKLLMQDGGIKLEA 200 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHHHHHTTCHHHHHHHHCS---SCTTC----------CCCSSCCHHH
T ss_pred HHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHhhHHHHHHHHhc---cCCccccccccccccccccccchhH
Confidence 3467889999999999988655 77888999999999999999999999986 34444 7
Q ss_pred HHHHHHHhhc----CchhHHHHHHHHHhhCCCc-----------------------------------------------
Q 007407 320 DVWLEACRLA----RPDEAKSVVAKGVRQIPKS----------------------------------------------- 348 (605)
Q Consensus 320 ~lwle~a~L~----~~~~Ak~~l~~al~~~P~s----------------------------------------------- 348 (605)
.+|...+..+ ..+.|...|.++++..|.+
T Consensus 201 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 280 (597)
T 2xpi_A 201 SMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLN 280 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHH
Confidence 7888877664 2368889999999988875
Q ss_pred --------HHHHHHHHHHHHhCCCcHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCCHHHHHHHHH----hhcHHHHH
Q 007407 349 --------ANKIRALRMALDEIPDSVRLWKALVE----ISSEEEARILLHRAVECCPLDVELWLALVR----LETYGVAR 412 (605)
Q Consensus 349 --------~~a~~vl~kAle~~P~~~~lw~~l~~----le~~e~A~~~l~rAl~~~P~~~~lw~aLa~----le~~e~A~ 412 (605)
..|.++|+++++. |.+...|..++. .+++++|+.+|+++++..|.+...|..++. .+++++|.
T Consensus 281 ~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 359 (597)
T 2xpi_A 281 KTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLY 359 (597)
T ss_dssp TTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHH
T ss_pred HHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHH
Confidence 1244455555544 677888877654 458999999999999999999888876654 45899999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007407 413 SVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTI 491 (605)
Q Consensus 413 ~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al 491 (605)
.+++++++..|.+..+|..++.+. ..|++++|..+|+++++..|. +...|...+..+...|++++|..+|++++
T Consensus 360 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 434 (597)
T 2xpi_A 360 LISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ-----FGPAWIGFAHSFAIEGEHDQAISAYTTAA 434 (597)
T ss_dssp HHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999999999887 999999999999999987665 56789999999999999999999999999
Q ss_pred HhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------C
Q 007407 492 EIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTY------C 565 (605)
Q Consensus 492 ~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~------~ 565 (605)
..+|. +..+|..++..+...|++++|+.+|+++++..|.+..+|..++.++...|++++|+++|++++.. .
T Consensus 435 ~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 511 (597)
T 2xpi_A 435 RLFQG---THLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSN 511 (597)
T ss_dssp HTTTT---CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HhCcc---chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccc
Confidence 99887 77889999999999999999999999999999999999999999999999999999999999998 5
Q ss_pred CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCC
Q 007407 566 PQA-EVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSE 603 (605)
Q Consensus 566 P~~-~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~ 603 (605)
|+. ..+|..++..+.+.|++++|..+|+++++.+|++.
T Consensus 512 p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 550 (597)
T 2xpi_A 512 EKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDA 550 (597)
T ss_dssp SGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCH
T ss_pred hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh
Confidence 654 78999999999999999999999999999999864
No 14
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.1e-23 Score=228.97 Aligned_cols=342 Identities=13% Similarity=0.038 Sum_probs=283.5
Q ss_pred hhhhccccccccCCccccCchhHHhhhhhhcccchhhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHH
Q 007407 227 LTLKLDGISDSVTGLTVFDPSGYLTRMNDLKITTNSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARK 306 (605)
Q Consensus 227 l~~kld~~~~~~~~~~~~dp~~yl~~L~~~~~~~~~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ 306 (605)
-..+++.++..+......+|... +....+..+...|++++|...|+++++.+|+++.+|+.++.++...|+++.|..
T Consensus 18 ~~g~~~~A~~~~~~al~~~p~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 94 (514)
T 2gw1_A 18 RNKKYDDAIKYYNWALELKEDPV---FYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMF 94 (514)
T ss_dssp HTSCHHHHHHHHHHHHHHCCCHH---HHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhccHHHHHHHHHHHHhcCccHH---HHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 33445555444333444445321 112223456889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCC--------------------------------------------------------------------
Q 007407 307 LITKGCNMCPKN-------------------------------------------------------------------- 318 (605)
Q Consensus 307 ll~~~l~~~P~~-------------------------------------------------------------------- 318 (605)
.+++++..+|.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (514)
T 2gw1_A 95 DLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPE 174 (514)
T ss_dssp HHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCC
T ss_pred HHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHH
Confidence 999999988743
Q ss_pred -----------HHHHHHHHhh--c---Cc--hhHHHHHHHHHh-----h--CCCc------------------------H
Q 007407 319 -----------EDVWLEACRL--A---RP--DEAKSVVAKGVR-----Q--IPKS------------------------A 349 (605)
Q Consensus 319 -----------~~lwle~a~L--~---~~--~~Ak~~l~~al~-----~--~P~s------------------------~ 349 (605)
..+|+..+.. . .. +.|...+.+++. . .|.+ .
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (514)
T 2gw1_A 175 LTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPL 254 (514)
T ss_dssp CCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHH
Confidence 4555554432 1 22 578888888888 4 4433 5
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHh----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHh----hcHHHHHHHHHHHHHh
Q 007407 350 NKIRALRMALDEIPDSVRLWKALVEI----SSEEEARILLHRAVECCPLDVELWLALVRL----ETYGVARSVLNKARKK 421 (605)
Q Consensus 350 ~a~~vl~kAle~~P~~~~lw~~l~~l----e~~e~A~~~l~rAl~~~P~~~~lw~aLa~l----e~~e~A~~vL~~al~~ 421 (605)
.|...|+++++..|. ...|..++.. +++++|+..|+++++..|.+..+|..++.+ ++++.|...++++++.
T Consensus 255 ~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 333 (514)
T 2gw1_A 255 GAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL 333 (514)
T ss_dssp HHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 678889999999999 8888766543 478999999999999999999999877754 4789999999999999
Q ss_pred CCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchh-
Q 007407 422 LPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEED- 499 (605)
Q Consensus 422 ~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~- 499 (605)
.|.+..+|..++.+. ..|++++|..+|+++++..|. ....|...|..+...|+++.|...+++++...|..+.
T Consensus 334 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 408 (514)
T 2gw1_A 334 DPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-----APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGI 408 (514)
T ss_dssp CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-----CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSC
T ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchH
Confidence 999999999999888 999999999999999998775 3468999999999999999999999999998776221
Q ss_pred --hHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 007407 500 --KKRTWVADVEECKK---RGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLM 574 (605)
Q Consensus 500 --~~~~~~~~a~~~~~---~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~ 574 (605)
...+|+..+..+.. .|++++|+..|++++...|++..+|..+|.++...|++++|...|++++..+|+++.+|..
T Consensus 409 ~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 488 (514)
T 2gw1_A 409 YVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQA 488 (514)
T ss_dssp SSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHH
Confidence 13489999999999 9999999999999999999999999999999999999999999999999999999888765
Q ss_pred HHH
Q 007407 575 GAK 577 (605)
Q Consensus 575 ~a~ 577 (605)
+..
T Consensus 489 ~~~ 491 (514)
T 2gw1_A 489 ITF 491 (514)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.93 E-value=2.6e-23 Score=212.31 Aligned_cols=294 Identities=12% Similarity=0.027 Sum_probs=222.4
Q ss_pred HHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcCchhHHHHHHHHHhhCCCcHHHHHHH
Q 007407 276 AVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLARPDEAKSVVAKGVRQIPKSANKIRAL 355 (605)
Q Consensus 276 ~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~~~~Ak~~l~~al~~~P~s~~a~~vl 355 (605)
+.+...|.++..++..|..+...|+++.|..++++++..+|.+..++...+.+... ......+...+
T Consensus 13 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~-------------~~~~~~A~~~~ 79 (330)
T 3hym_B 13 ESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVE-------------LNKANELFYLS 79 (330)
T ss_dssp -------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHH-------------HTCHHHHHHHH
T ss_pred HHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHH-------------hhhHHHHHHHH
Confidence 33444455555566666666556666666666666666666655555433322110 00002233344
Q ss_pred HHHHHhCCCcHHHHHHH----HHhC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHh----hcHHHHHHHHHHHHHhCCCCH
Q 007407 356 RMALDEIPDSVRLWKAL----VEIS-SEEEARILLHRAVECCPLDVELWLALVRL----ETYGVARSVLNKARKKLPKER 426 (605)
Q Consensus 356 ~kAle~~P~~~~lw~~l----~~le-~~e~A~~~l~rAl~~~P~~~~lw~aLa~l----e~~e~A~~vL~~al~~~p~~~ 426 (605)
+++++..|++...|..+ ...+ ++++|+.+|+++++..|.+..+|..++.+ ++++.|...++++++..|.+.
T Consensus 80 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 159 (330)
T 3hym_B 80 HKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCH 159 (330)
T ss_dssp HHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCS
T ss_pred HHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccH
Confidence 44445555555555444 3445 78999999999999999999999887754 579999999999999999999
Q ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------hh
Q 007407 427 AIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDE------ED 499 (605)
Q Consensus 427 ~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~------~~ 499 (605)
.+|..++.+. ..|++++|..+|+++++..|. +...|...+..+...|++++|...+++++...+.. +.
T Consensus 160 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 234 (330)
T 3hym_B 160 LPMLYIGLEYGLTNNSKLAERFFSQALSIAPE-----DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDK 234 (330)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccH
Confidence 9999999877 999999999999999988765 46789999999999999999999999999875320 12
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007407 500 KKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEK 579 (605)
Q Consensus 500 ~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~ 579 (605)
...+|..++..+...|++++|+..|+++++..|++..+|..+|.++...|++++|...|+++++.+|+++..|..++..+
T Consensus 235 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 235 WEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred -HHcCChHH
Q 007407 580 -WLAGDVPA 587 (605)
Q Consensus 580 -~~~gd~~~ 587 (605)
...|+.+.
T Consensus 315 ~~~~g~~~a 323 (330)
T 3hym_B 315 EMYIGDSEA 323 (330)
T ss_dssp HTTTTC---
T ss_pred HHHhCchhc
Confidence 45776543
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.93 E-value=8e-23 Score=210.63 Aligned_cols=311 Identities=11% Similarity=0.003 Sum_probs=251.2
Q ss_pred hhhccccccccCCccccCchhHHhhhhhhcccchhhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHH
Q 007407 228 TLKLDGISDSVTGLTVFDPSGYLTRMNDLKITTNSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKL 307 (605)
Q Consensus 228 ~~kld~~~~~~~~~~~~dp~~yl~~L~~~~~~~~~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~l 307 (605)
..+++++...+......+|...... ...+..+...|++++|...|+++++.+|+++.+|..++.++...|+++.|...
T Consensus 16 ~g~~~~A~~~~~~~l~~~p~~~~~~--~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 93 (359)
T 3ieg_A 16 AGQLADALSQFHAAVDGDPDNYIAY--YRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDD 93 (359)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHH--HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhCcccHHHH--HHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHH
Confidence 3344444433333333455432211 22233467899999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCC---CCHHHHHHHHhhcCchhHHHHHHHHHhhCCCcHHHHHHHHHHHHhCCCcHHHHHHHHH----hCCHHH
Q 007407 308 ITKGCNMCP---KNEDVWLEACRLARPDEAKSVVAKGVRQIPKSANKIRALRMALDEIPDSVRLWKALVE----ISSEEE 380 (605)
Q Consensus 308 l~~~l~~~P---~~~~lwle~a~L~~~~~Ak~~l~~al~~~P~s~~a~~vl~kAle~~P~~~~lw~~l~~----le~~e~ 380 (605)
++++++.+| .+..+|...+.+..... ................|...++++++..|++..+|..++. ++++++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (359)
T 3ieg_A 94 FKKVLKSNPSEQEEKEAESQLVKADEMQR-LRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRK 172 (359)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhcCCcccChHHHHHHHHHHHHHHH-HHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999 89999888766542210 0111112222333367888999999999999998876654 468999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHh----hcHHHHHHHHHHHHHhCCCCHHHHHHH------------HHHH-HcCCHHH
Q 007407 381 ARILLHRAVECCPLDVELWLALVRL----ETYGVARSVLNKARKKLPKERAIWIAA------------AKLE-ANGNTSM 443 (605)
Q Consensus 381 A~~~l~rAl~~~P~~~~lw~aLa~l----e~~e~A~~vL~~al~~~p~~~~iwi~~------------a~Le-~~g~~~~ 443 (605)
|+..|+++++..|.+..+|..++.+ ++++.|...++++++..|.+...|..+ +.+. ..|++++
T Consensus 173 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 252 (359)
T 3ieg_A 173 AISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTD 252 (359)
T ss_dssp HHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999999988764 579999999999999999999887754 5445 8999999
Q ss_pred HHHHHHHHHHHhccCcccccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHH
Q 007407 444 VGKIIERGIRALQGEEVVIDR----DTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIET 519 (605)
Q Consensus 444 a~~i~~~al~~~p~~~~~~~~----~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~ 519 (605)
|..+++++++..|. +. ..|...+..+...|+++.|...++.++..+|+ +..+|+..+..+...|++++
T Consensus 253 A~~~~~~~~~~~~~-----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~ 324 (359)
T 3ieg_A 253 ATSKYESVMKTEPS-----VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD---NVNALKDRAEAYLIEEMYDE 324 (359)
T ss_dssp HHHHHHHHHHHCCS-----SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhcCCC-----chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHcCCHHH
Confidence 99999999998764 33 34667889999999999999999999999988 78899999999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 007407 520 ARAIFSPACTVFLTKKNIWLKAAQLEKSYG 549 (605)
Q Consensus 520 A~~i~~~al~~~P~~~~~w~~la~l~~~~g 549 (605)
|...|+++++.+|++..+|..++.++...+
T Consensus 325 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 325 AIQDYEAAQEHNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 999999999999999999999988876543
No 17
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=6.4e-23 Score=224.79 Aligned_cols=342 Identities=11% Similarity=0.050 Sum_probs=269.8
Q ss_pred hhhhhhhhccccccccCCccccCchhHHhhhhhhcccchhhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHH
Q 007407 223 RGKILTLKLDGISDSVTGLTVFDPSGYLTRMNDLKITTNSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEA 302 (605)
Q Consensus 223 R~~~l~~kld~~~~~~~~~~~~dp~~yl~~L~~~~~~~~~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~ 302 (605)
...+-..+++.++..+......+|....... ..+..+...|++++|...|+++++.+|+++.+|+.++.++...|+++
T Consensus 33 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~--~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 110 (537)
T 3fp2_A 33 NHFFTAKNFNEAIKYYQYAIELDPNEPVFYS--NISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFT 110 (537)
T ss_dssp HHHHHTTCCC-CHHHHHHHHHHCTTCHHHHH--HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHhhCCCCcHHHH--HHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHH
Confidence 3344445666666555555556665432222 22334678899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHH-----------------------------------------------------------
Q 007407 303 AARKLITKGCNMCPKNEDVWL----------------------------------------------------------- 323 (605)
Q Consensus 303 ~Ar~ll~~~l~~~P~~~~lwl----------------------------------------------------------- 323 (605)
.|...++ ++..+|.....|+
T Consensus 111 ~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (537)
T 3fp2_A 111 DAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNY 189 (537)
T ss_dssp HHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSS
T ss_pred HHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhcccc
Confidence 9999995 7777777655432
Q ss_pred ---------HHHhhcC------------chhHHHHHHHHHhhCCCc------------------------HHHHHHHHHH
Q 007407 324 ---------EACRLAR------------PDEAKSVVAKGVRQIPKS------------------------ANKIRALRMA 358 (605)
Q Consensus 324 ---------e~a~L~~------------~~~Ak~~l~~al~~~P~s------------------------~~a~~vl~kA 358 (605)
....++. .+.|..++.+++...|.+ ..+...|+++
T Consensus 190 ~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~ 269 (537)
T 3fp2_A 190 DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQES 269 (537)
T ss_dssp CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 1112211 135667888888888885 4678889999
Q ss_pred HHhCCCcHHHHHHHHHh----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHh----hcHHHHHHHHHHHHHhCCCCHHHHH
Q 007407 359 LDEIPDSVRLWKALVEI----SSEEEARILLHRAVECCPLDVELWLALVRL----ETYGVARSVLNKARKKLPKERAIWI 430 (605)
Q Consensus 359 le~~P~~~~lw~~l~~l----e~~e~A~~~l~rAl~~~P~~~~lw~aLa~l----e~~e~A~~vL~~al~~~p~~~~iwi 430 (605)
+...|+ ...|..++.. +++++|+.+|+++++..|.+..+|..++.+ ++++.|...++++++..|.+..+|.
T Consensus 270 ~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 348 (537)
T 3fp2_A 270 INLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYI 348 (537)
T ss_dssp HHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHH
T ss_pred HhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 999999 8888777654 378999999999999999999999888754 5799999999999999999999999
Q ss_pred HHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchh---hHHHHHH
Q 007407 431 AAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEED---KKRTWVA 506 (605)
Q Consensus 431 ~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~---~~~~~~~ 506 (605)
.++.+. ..|++++|..+|+++++..|. +...|..++..+...|+++.|...|++++...|.... ....++.
T Consensus 349 ~la~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 423 (537)
T 3fp2_A 349 QLACLLYKQGKFTESEAFFNETKLKFPT-----LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIG 423 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHH
Confidence 999887 999999999999999998776 4568899999999999999999999999998765221 2334566
Q ss_pred HHHHHHHc----------CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 007407 507 DVEECKKR----------GSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWL 573 (605)
Q Consensus 507 ~a~~~~~~----------g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l 573 (605)
.+..+... |++++|+..|+++++.+|++..+|..+|.++...|++++|+..|++++..+|+.+....
T Consensus 424 ~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 424 KATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 77788888 99999999999999999999999999999999999999999999999999998876543
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.92 E-value=1.2e-22 Score=207.50 Aligned_cols=277 Identities=13% Similarity=-0.007 Sum_probs=239.6
Q ss_pred hhhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcCchhHHHHHHH
Q 007407 261 NSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLARPDEAKSVVAK 340 (605)
Q Consensus 261 ~~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~~~~Ak~~l~~ 340 (605)
....|++++|..+|+++++.+|.++..+...+.++...|+++.|..+++++++.+|.+..+|+..+.++....
T Consensus 32 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------- 104 (330)
T 3hym_B 32 HYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVG------- 104 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSC-------
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhh-------
Confidence 4567999999999999999999999999999999999999999999999999999999999988876532100
Q ss_pred HHhhCCCcHHHHHHHHHHHHhCCCcHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh----hcHHHHH
Q 007407 341 GVRQIPKSANKIRALRMALDEIPDSVRLWKALVE----ISSEEEARILLHRAVECCPLDVELWLALVRL----ETYGVAR 412 (605)
Q Consensus 341 al~~~P~s~~a~~vl~kAle~~P~~~~lw~~l~~----le~~e~A~~~l~rAl~~~P~~~~lw~aLa~l----e~~e~A~ 412 (605)
.....|...|+++++..|++...|..++. .+++++|+..|+++++..|.+...|..++.+ ++++.|.
T Consensus 105 -----~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 179 (330)
T 3hym_B 105 -----HKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAE 179 (330)
T ss_dssp -----SCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred -----hhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHH
Confidence 01123556677777778888887876654 4589999999999999999998888877654 5799999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcc----cccHHHHHHHHHHHHHcCCHHHHHHHH
Q 007407 413 SVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEV----VIDRDTWMKEAEVADRAGSVVTCVAII 487 (605)
Q Consensus 413 ~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~----~~~~~~wl~~A~~~e~~g~~~~A~~i~ 487 (605)
..++++++..|.++.+|..++.+. ..|++++|..+|++++...+..+. +.....|...|..+...|.+++|...+
T Consensus 180 ~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 259 (330)
T 3hym_B 180 RFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYH 259 (330)
T ss_dssp HHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 999999999999999999999888 999999999999999998865432 234679999999999999999999999
Q ss_pred HHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH-HHcCCHH
Q 007407 488 TNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLE-KSYGCRE 552 (605)
Q Consensus 488 ~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~-~~~g~~e 552 (605)
++++..+|. +..+|..++..+...|++++|...|+++++.+|++..+|..++.++ ...|+.+
T Consensus 260 ~~a~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 260 RQALVLIPQ---NASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHSTT---CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHhhCcc---chHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 999999988 7889999999999999999999999999999999999999999977 5667654
No 19
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.92 E-value=2.5e-23 Score=214.19 Aligned_cols=234 Identities=14% Similarity=0.165 Sum_probs=208.6
Q ss_pred CCcHHHHHHHHHhC--C------H----HHHHHHHHHHHHhCCCCHHHHHHHHHh-----------hcH-------HHHH
Q 007407 363 PDSVRLWKALVEIS--S------E----EEARILLHRAVECCPLDVELWLALVRL-----------ETY-------GVAR 412 (605)
Q Consensus 363 P~~~~lw~~l~~le--~------~----e~A~~~l~rAl~~~P~~~~lw~aLa~l-----------e~~-------e~A~ 412 (605)
|.+..+|+.+++++ + . +.|+.+|+++++.+|.++++|+.++.+ +++ ++|+
T Consensus 5 ~~~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~ 84 (308)
T 2ond_A 5 AQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAA 84 (308)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHH
Confidence 44678899998875 2 2 688899999999999999999988765 333 8999
Q ss_pred HHHHHHHH-hCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHH-HHHHHHHHHHHcCCHHHHHHHHHH
Q 007407 413 SVLNKARK-KLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRD-TWMKEAEVADRAGSVVTCVAIITN 489 (605)
Q Consensus 413 ~vL~~al~-~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~-~wl~~A~~~e~~g~~~~A~~i~~~ 489 (605)
.+|++|++ ..|.+..+|+.++.++ ..|++++|..+|+++++..|. +.. .|..++..+.+.|.++.|+.+|++
T Consensus 85 ~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 159 (308)
T 2ond_A 85 NIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-----DPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-----CTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-----CccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 99999999 6899999999999988 999999999999999987664 233 899999999999999999999999
Q ss_pred HHHhCCCchhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---C
Q 007407 490 TIEIGVDEEDKKRTWVADVEECKK-RGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTY---C 565 (605)
Q Consensus 490 al~~~p~~~~~~~~~~~~a~~~~~-~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~---~ 565 (605)
++...|. ...+|+..+.+... .|++++|+.+|+++++.+|++..+|..++.++...|++++|+.+|++|+.. .
T Consensus 160 a~~~~p~---~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~ 236 (308)
T 2ond_A 160 AREDART---RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHTSTTC---CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHhcCCC---CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCC
Confidence 9999887 67788877776544 699999999999999999999999999999999999999999999999996 3
Q ss_pred C-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCCC
Q 007407 566 P-QAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSEE 604 (605)
Q Consensus 566 P-~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~~ 604 (605)
| ++..+|..++.++...|+.+.|..++.++++.+|++..
T Consensus 237 p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~ 276 (308)
T 2ond_A 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccc
Confidence 4 47899999999999999999999999999999998754
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.92 E-value=2.6e-23 Score=216.55 Aligned_cols=307 Identities=13% Similarity=0.039 Sum_probs=222.8
Q ss_pred hhhhccHHHHHH-HHHHHHHhCCCCh----HHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcCchhHH
Q 007407 261 NSELRDILKARK-IVRAVTKNSPKKP----LGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLARPDEAK 335 (605)
Q Consensus 261 ~~~~gd~~kAr~-ll~~al~~~P~~~----~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~~~~Ak 335 (605)
+.-.|++.+|.. .|.++++..|.++ ..|+..+..+...|+++.|..+++++++.+|.+..+|+..+.++...
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--- 111 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAEN--- 111 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHT---
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC---
Confidence 346678899998 9999998888875 55889999999999999999999999999999988887665543110
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHhCCCcHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhcHHHH
Q 007407 336 SVVAKGVRQIPKSANKIRALRMALDEIPDSVRLWKALVE----ISSEEEARILLHRAVECCPLDVELWLALVRLETYGVA 411 (605)
Q Consensus 336 ~~l~~al~~~P~s~~a~~vl~kAle~~P~~~~lw~~l~~----le~~e~A~~~l~rAl~~~P~~~~lw~aLa~le~~e~A 411 (605)
.+...|...|+++++..|++...|..++. .+++++|+..|+++++..|.+...+..+......
T Consensus 112 ----------g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 178 (368)
T 1fch_A 112 ----------EQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGG--- 178 (368)
T ss_dssp ----------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-----------
T ss_pred ----------cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhh---
Confidence 00012333444444445555554444332 2355666666666666666555443322111000
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007407 412 RSVLNKARKKLPKERAIWIAAAKLEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTI 491 (605)
Q Consensus 412 ~~vL~~al~~~p~~~~iwi~~a~Le~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al 491 (605)
......+..++.+...|++++|..+|++++...|... ....|...+..+...|+++.|...+++++
T Consensus 179 -----------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al 244 (368)
T 1fch_A 179 -----------AGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSI---DPDVQCGLGVLFNLSGEYDKAVDCFTAAL 244 (368)
T ss_dssp ------------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -----------hcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0000111123333366778899999999998877632 46788889999999999999999999999
Q ss_pred HhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---
Q 007407 492 EIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQA--- 568 (605)
Q Consensus 492 ~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~--- 568 (605)
..+|. +..+|..++..+...|++++|+.+|+++++..|++..+|..+|.++...|++++|+..|++++..+|++
T Consensus 245 ~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 321 (368)
T 1fch_A 245 SVRPN---DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGP 321 (368)
T ss_dssp HHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC---
T ss_pred HhCcC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCc
Confidence 99888 788999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred --------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCC
Q 007407 569 --------EVLWLMGAKEKWLAGDVPATRDILQEAYAAIP 600 (605)
Q Consensus 569 --------~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P 600 (605)
..+|..++.++...|++++|..++.++++..+
T Consensus 322 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 361 (368)
T 1fch_A 322 RGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLL 361 (368)
T ss_dssp ---CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHH
T ss_pred cccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHH
Confidence 89999999999999999999999999887654
No 21
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.91 E-value=7e-22 Score=213.58 Aligned_cols=330 Identities=13% Similarity=0.047 Sum_probs=191.3
Q ss_pred chhhhccHHHHHHHHHHHHHh---------CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCC--------CCHHHH
Q 007407 260 TNSELRDILKARKIVRAVTKN---------SPKKPLGWIQAARLEELANEEAAARKLITKGCNMCP--------KNEDVW 322 (605)
Q Consensus 260 ~~~~~gd~~kAr~ll~~al~~---------~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P--------~~~~lw 322 (605)
.+...|++++|...|+++++. +|.....|..+|.++...|++++|...++++++.+| ....++
T Consensus 60 ~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~ 139 (472)
T 4g1t_A 60 LKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELD 139 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHH
Confidence 356789999999999999876 677788899999999999999999999999988743 344555
Q ss_pred HHHH----hhcCc--hhHHHHHHHHHhhCCCc--------------------HHHHHHHHHHHHhCCCcHHHHHHHH---
Q 007407 323 LEAC----RLARP--DEAKSVVAKGVRQIPKS--------------------ANKIRALRMALDEIPDSVRLWKALV--- 373 (605)
Q Consensus 323 le~a----~L~~~--~~Ak~~l~~al~~~P~s--------------------~~a~~vl~kAle~~P~~~~lw~~l~--- 373 (605)
...+ .+... +.|...|.++++..|++ ..+...|+++++..|++..+|..++
T Consensus 140 ~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~ 219 (472)
T 4g1t_A 140 CEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKL 219 (472)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHH
Confidence 4432 22222 45666666666666665 1233456666666666655554332
Q ss_pred -HhC----CHHHHHHHHHHHHHhCCCCHHHHHHHHHh----hcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-Hc-----
Q 007407 374 -EIS----SEEEARILLHRAVECCPLDVELWLALVRL----ETYGVARSVLNKARKKLPKERAIWIAAAKLE-AN----- 438 (605)
Q Consensus 374 -~le----~~e~A~~~l~rAl~~~P~~~~lw~aLa~l----e~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~----- 438 (605)
.+. ++++|..+|++++...|.+..+|..++.+ +.++.|...++++++..|++..+|..+|.++ ..
T Consensus 220 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~ 299 (472)
T 4g1t_A 220 HKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVM 299 (472)
T ss_dssp HHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhh
Confidence 222 34566666666666666666666555433 3566666666666666666666665555332 11
Q ss_pred --------------CCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHH
Q 007407 439 --------------GNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTW 504 (605)
Q Consensus 439 --------------g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~ 504 (605)
+..+.+...|++++...|.. ...|...|..+...|++++|...|++++...|.......++
T Consensus 300 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~ 374 (472)
T 4g1t_A 300 NLRENGMYGKRKLLELIGHAVAHLKKADEANDNL-----FRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLH 374 (472)
T ss_dssp HC------CHHHHHHHHHHHHHHHHHHHHHCTTT-----CCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCch-----hhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 11334445555555554432 22455556666666666666666666666655522222333
Q ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 007407 505 VADVEEC-KKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAG 583 (605)
Q Consensus 505 ~~~a~~~-~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~g 583 (605)
+.++.+. ...|++++|+..|.+++++.|.+...... ...+..++++++..+|+++.+|..+|.++...|
T Consensus 375 ~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~----------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g 444 (472)
T 4g1t_A 375 LRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM----------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNE 444 (472)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH----------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 3444322 34556666666666666666665432222 223445566666777888889999999999999
Q ss_pred ChHHHHHHHHHHHHHCCCCCC
Q 007407 584 DVPATRDILQEAYAAIPNSEE 604 (605)
Q Consensus 584 d~~~Ar~il~kAl~~~P~~~~ 604 (605)
++++|.+.|++|++..|.+|.
T Consensus 445 ~~~~A~~~y~kALe~~~~~p~ 465 (472)
T 4g1t_A 445 KMQQADEDSERGLESGSLIPS 465 (472)
T ss_dssp HCC------------------
T ss_pred CHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999887764
No 22
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.90 E-value=2.7e-21 Score=212.69 Aligned_cols=322 Identities=9% Similarity=0.045 Sum_probs=252.5
Q ss_pred ccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcC-HHHHHHHHHHHHhh---CCCCHHHHHHHHhhcCc--------h
Q 007407 265 RDILKARKIVRAVTKNSPKKPLGWIQAARLEELANE-EAAARKLITKGCNM---CPKNEDVWLEACRLARP--------D 332 (605)
Q Consensus 265 gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~-~~~Ar~ll~~~l~~---~P~~~~lwle~a~L~~~--------~ 332 (605)
|++++++.+|++++...| +...|..++.++...+. .+..+.+|+.++.. +|.+..+|..++.++.. +
T Consensus 28 ~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~ 106 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIE 106 (493)
T ss_dssp TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHH
T ss_pred CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHH
Confidence 789999999999999999 88899999999988773 46678889998875 68899999999998542 3
Q ss_pred hHHHHHHHHHhhCCCc--------------------------------HHHHHHHHHHHHhCCC-cHHHHHHHHHhC--C
Q 007407 333 EAKSVVAKGVRQIPKS--------------------------------ANKIRALRMALDEIPD-SVRLWKALVEIS--S 377 (605)
Q Consensus 333 ~Ak~~l~~al~~~P~s--------------------------------~~a~~vl~kAle~~P~-~~~lw~~l~~le--~ 377 (605)
.++.+|.+||. .|.. ..++.+|+.+....|. +..+|..+++++ +
T Consensus 107 ~vR~iy~rAL~-~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~ 185 (493)
T 2uy1_A 107 KIRNGYMRALQ-TPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMEN 185 (493)
T ss_dssp HHHHHHHHHHT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHh-ChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcC
Confidence 67889999998 4544 0135556666555444 677999998876 2
Q ss_pred ---------HHHHHHHHHHHHHhCCCCHHHHHHHHHhh----cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHH
Q 007407 378 ---------EEEARILLHRAVECCPLDVELWLALVRLE----TYGVARSVLNKARKKLPKERAIWIAAAKLEANGNTSMV 444 (605)
Q Consensus 378 ---------~e~A~~~l~rAl~~~P~~~~lw~aLa~le----~~e~A~~vL~~al~~~p~~~~iwi~~a~Le~~g~~~~a 444 (605)
.+.+..+|++++..+|.+..+|+.++++. ..+.|+.+|++|+.. |.+..+|+.++.+.+.+.. .
T Consensus 186 ~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~--~ 262 (493)
T 2uy1_A 186 GMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAV--Y 262 (493)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHH--H
T ss_pred CccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHH--H
Confidence 23466799999999999999999998764 578999999999999 9999999988876321111 2
Q ss_pred HHHHHHHHHHh--ccC--cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcC-CHHH
Q 007407 445 GKIIERGIRAL--QGE--EVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRG-SIET 519 (605)
Q Consensus 445 ~~i~~~al~~~--p~~--~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g-~~~~ 519 (605)
..++++.+... +.. .......+|+.++..+.+.+..+.|+.+|.++ . .|. . ...+|+..|.+....+ +++.
T Consensus 263 ~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~-~-~~~v~i~~A~lE~~~~~d~~~ 338 (493)
T 2uy1_A 263 GDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-NEG-V-GPHVFIYCAFIEYYATGSRAT 338 (493)
T ss_dssp HHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSC-C-CHHHHHHHHHHHHHHHCCSHH
T ss_pred HHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCC-C-ChHHHHHHHHHHHHHCCChHH
Confidence 22222211000 000 00113478999999998888899999999999 4 333 1 5678888888777666 5999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHC
Q 007407 520 ARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAI 599 (605)
Q Consensus 520 A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~ 599 (605)
|+.+|+.+++.+|+.+.+|..++.++...|+.+.|+.+|+++ +++..+|..+..++...|+.+.++++++++++..
T Consensus 339 ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~ 414 (493)
T 2uy1_A 339 PYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMDAI 414 (493)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999998 5679999999999999999999999999999743
No 23
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.90 E-value=5.4e-22 Score=202.20 Aligned_cols=277 Identities=9% Similarity=0.033 Sum_probs=215.5
Q ss_pred chhhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcCchhHHHHHH
Q 007407 260 TNSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLARPDEAKSVVA 339 (605)
Q Consensus 260 ~~~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~~~~Ak~~l~ 339 (605)
.....|++.+|..+|+++++.+|+++.+|..++.++...|+++.|...++++++.+|.+..+|...+.+
T Consensus 30 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~----------- 98 (327)
T 3cv0_A 30 SMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS----------- 98 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-----------
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH-----------
Confidence 456788899999999999999999988888888888888999999998888888888876665543322
Q ss_pred HHHhhCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhcHHHHHHHHHHHH
Q 007407 340 KGVRQIPKSANKIRALRMALDEIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALVRLETYGVARSVLNKAR 419 (605)
Q Consensus 340 ~al~~~P~s~~a~~vl~kAle~~P~~~~lw~~l~~le~~e~A~~~l~rAl~~~P~~~~lw~aLa~le~~e~A~~vL~~al 419 (605)
+...+++++|+..|+++++..|.+..++..+....
T Consensus 99 --------------------------------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~------------- 133 (327)
T 3cv0_A 99 --------------------------------HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQAD------------- 133 (327)
T ss_dssp --------------------------------HHHTTCHHHHHHHHHHHHHTSTTTTTC---------------------
T ss_pred --------------------------------HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHH-------------
Confidence 23446889999999999999998877666542210
Q ss_pred HhCCCCHHHHHHH-HH-HH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 007407 420 KKLPKERAIWIAA-AK-LE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVD 496 (605)
Q Consensus 420 ~~~p~~~~iwi~~-a~-Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~ 496 (605)
|.....+ .+ +. +. ..|++++|..+++++++..|. ....|...+..+...|+++.|...+++++..+|.
T Consensus 134 ---~~~~~~~-~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 204 (327)
T 3cv0_A 134 ---VDIDDLN-VQSEDFFFAAPNEYRECRTLLHAALEMNPN-----DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD 204 (327)
T ss_dssp ----------------CCTTSHHHHHHHHHHHHHHHHHSTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ---HHHHHHH-HHHHhHHHHHcccHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 1111111 11 22 23 556677777778877776654 4567777777888888888888888888888877
Q ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------
Q 007407 497 EEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQ--------- 567 (605)
Q Consensus 497 ~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~--------- 567 (605)
+..+|...+..+...|++++|..+|+++++..|++..+|..+|.++...|++++|...|++++...|+
T Consensus 205 ---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 281 (327)
T 3cv0_A 205 ---DAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEAS 281 (327)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----C
T ss_pred ---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccch
Confidence 67888889999999999999999999999999999999999999999999999999999999999998
Q ss_pred ---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCCC
Q 007407 568 ---AEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSEE 604 (605)
Q Consensus 568 ---~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~~ 604 (605)
++.+|..++.++...|++++|..++.++++..|++..
T Consensus 282 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 321 (327)
T 3cv0_A 282 REATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEFG 321 (327)
T ss_dssp CTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHHTT
T ss_pred hhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchhhh
Confidence 7889999999999999999999999998888776543
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.90 E-value=4.7e-22 Score=207.75 Aligned_cols=278 Identities=12% Similarity=0.047 Sum_probs=210.5
Q ss_pred HHHHHHHhCCCCh----HHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcCchhHHHHHHHHHhhCCCc
Q 007407 273 IVRAVTKNSPKKP----LGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLARPDEAKSVVAKGVRQIPKS 348 (605)
Q Consensus 273 ll~~al~~~P~~~----~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~~~~Ak~~l~~al~~~P~s 348 (605)
.+.......|.++ ..|+..+..+...|+++.|..+++++++.+|.+..+|..++.++
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~------------------- 109 (365)
T 4eqf_A 49 ASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQ------------------- 109 (365)
T ss_dssp ----CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-------------------
T ss_pred HHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHH-------------------
Confidence 3444444445554 34888888888889999999999999988888887776655442
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh----hcHHHHHHHHHHHHHhCCC
Q 007407 349 ANKIRALRMALDEIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALVRL----ETYGVARSVLNKARKKLPK 424 (605)
Q Consensus 349 ~~a~~vl~kAle~~P~~~~lw~~l~~le~~e~A~~~l~rAl~~~P~~~~lw~aLa~l----e~~e~A~~vL~~al~~~p~ 424 (605)
...+++++|+.+|+++++..|.+..+|..++.+ +++++|...|+++++..|.
T Consensus 110 ------------------------~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 165 (365)
T 4eqf_A 110 ------------------------AENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPK 165 (365)
T ss_dssp ------------------------HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH
T ss_pred ------------------------HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCcc
Confidence 222355556666666666666666666555432 3566666666666666665
Q ss_pred CHHHHHH----------HHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007407 425 ERAIWIA----------AAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEI 493 (605)
Q Consensus 425 ~~~iwi~----------~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~ 493 (605)
+..+|.. ++.+. ..|++++|..+|+++++..|.. .+...|...+..+...|++++|...|++++..
T Consensus 166 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 242 (365)
T 4eqf_A 166 YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDM---IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV 242 (365)
T ss_dssp HHCC-------------------CCHHHHHHHHHHHHHHHHSCSS---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred chHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCc---cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 5444433 35555 7788899999999999887652 14678888899999999999999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------
Q 007407 494 GVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQ------ 567 (605)
Q Consensus 494 ~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~------ 567 (605)
.|. +..+|..++..+...|++++|+..|+++++.+|++..+|..+|.++...|++++|+..|++++..+|+
T Consensus 243 ~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 319 (365)
T 4eqf_A 243 RPE---DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQ 319 (365)
T ss_dssp CTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC-----
T ss_pred CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcc
Confidence 888 78899999999999999999999999999999999999999999999999999999999999999886
Q ss_pred ------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHC
Q 007407 568 ------AEVLWLMGAKEKWLAGDVPATRDILQEAYAAI 599 (605)
Q Consensus 568 ------~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~ 599 (605)
+..+|..++.++...|+.+.|..++.+++...
T Consensus 320 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~~~ 357 (365)
T 4eqf_A 320 VPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVL 357 (365)
T ss_dssp -------CHHHHHHHHHHHHHTCHHHHHHHHTTCCGGG
T ss_pred cchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHHHH
Confidence 36789999999999999999998887755443
No 25
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.89 E-value=1.1e-20 Score=207.86 Aligned_cols=308 Identities=13% Similarity=0.074 Sum_probs=204.5
Q ss_pred hhhhc-cHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcCc-----hhH
Q 007407 261 NSELR-DILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLARP-----DEA 334 (605)
Q Consensus 261 ~~~~g-d~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~~-----~~A 334 (605)
+...| ++..||.+|++++...|. |+++.++.+|++++..+| +.++|+.++++... +..
T Consensus 4 e~~~~~~i~~aR~vyer~l~~~P~---------------~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 4 EEKMGVELSSPSAIMEHARRLYMS---------------KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp --------CCHHHHHHHHHHHHHT---------------TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CT
T ss_pred HHHcCcchHHHHHHHHHHHHHCCC---------------CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHH
Confidence 45667 499999999999999997 789999999999999999 99999999987532 233
Q ss_pred HHHHHHHHhh---CCCc---------------------HHHHHHHHHHHHhCCC--cHHHHHHHHHhC------------
Q 007407 335 KSVVAKGVRQ---IPKS---------------------ANKIRALRMALDEIPD--SVRLWKALVEIS------------ 376 (605)
Q Consensus 335 k~~l~~al~~---~P~s---------------------~~a~~vl~kAle~~P~--~~~lw~~l~~le------------ 376 (605)
+.+|..|+.+ +|.| ..++++|++||. .|. ...+|..+..++
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~-~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~ 146 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ-TPMGSLSELWKDFENFELELNKITGKKIV 146 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh-ChhhhHHHHHHHHHHHHHHhccccHHHHH
Confidence 4555665554 2222 124555666665 332 234555554432
Q ss_pred -----CHHHHHHHHHHHHHhCCC-CHHHHHHHHHhhc-----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHH-Hc
Q 007407 377 -----SEEEARILLHRAVECCPL-DVELWLALVRLET-----------YGVARSVLNKARKKLPKERAIWIAAAKLE-AN 438 (605)
Q Consensus 377 -----~~e~A~~~l~rAl~~~P~-~~~lw~aLa~le~-----------~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~ 438 (605)
.+..|+.+|..+....|. +..+|..++.++. ...+..+|++++..+|..+.+|+.+++++ .+
T Consensus 147 ~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~ 226 (493)
T 2uy1_A 147 GDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGI 226 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred HHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 112334444444443332 4556666666542 12345677777777777777777777666 66
Q ss_pred CCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCchhhHHHHHHHHHHHH
Q 007407 439 GNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIG------VDEEDKKRTWVADVEECK 512 (605)
Q Consensus 439 g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~------p~~~~~~~~~~~~a~~~~ 512 (605)
|+.+.|..+|++|+.. |.+ ..+|+.++...+ .+ ..+..++...+... +.......+|+.++.++.
T Consensus 227 ~~~~~ar~i~erAi~~-P~~-----~~l~~~y~~~~e-~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~ 297 (493)
T 2uy1_A 227 GQKEKAKKVVERGIEM-SDG-----MFLSLYYGLVMD-EE--AVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVL 297 (493)
T ss_dssp TCHHHHHHHHHHHHHH-CCS-----SHHHHHHHHHTT-CT--HHHHHHHHHTC----------CHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhC-CCc-----HHHHHHHHhhcc-hh--HHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHH
Confidence 7777777777777776 542 345665554421 11 01112222110000 000123467999999998
Q ss_pred HcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 007407 513 KRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYG-CRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDI 591 (605)
Q Consensus 513 ~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g-~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~i 591 (605)
+.+.++.|+.+|.+| ...+....+|..+|.++...+ +.+.|+.+|+.+++.+|+.+.+|+.|+.++...|+.+.||.+
T Consensus 298 r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l 376 (493)
T 2uy1_A 298 KKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARAL 376 (493)
T ss_dssp HHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 888999999999999 433346789999999999877 599999999999999999999999999999899999999999
Q ss_pred HHHH
Q 007407 592 LQEA 595 (605)
Q Consensus 592 l~kA 595 (605)
|+++
T Consensus 377 ~er~ 380 (493)
T 2uy1_A 377 FKRL 380 (493)
T ss_dssp HHHS
T ss_pred HHHH
Confidence 9986
No 26
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.88 E-value=9.4e-21 Score=194.81 Aligned_cols=244 Identities=14% Similarity=0.162 Sum_probs=192.8
Q ss_pred CCChHHHHHHHHHHHHh----cCH----HHHHHHHHHHHhhCCCCHHHHHHHHhhcCchhHHHHHHHHHhhCCCcHHHHH
Q 007407 282 PKKPLGWIQAARLEELA----NEE----AAARKLITKGCNMCPKNEDVWLEACRLARPDEAKSVVAKGVRQIPKSANKIR 353 (605)
Q Consensus 282 P~~~~~wia~Arle~~~----g~~----~~Ar~ll~~~l~~~P~~~~lwle~a~L~~~~~Ak~~l~~al~~~P~s~~a~~ 353 (605)
|.....|..++.+|... ++. ..|..+|++++..+|.++++|+.++.+..... .
T Consensus 5 ~~~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~-~------------------ 65 (308)
T 2ond_A 5 AQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSS-K------------------ 65 (308)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-H------------------
T ss_pred HHHHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-h------------------
Confidence 44556788888887664 233 67778888888888888888887776642100 0
Q ss_pred HHHHHHHhCCCcHHHHHHHHHhCC-------HHHHHHHHHHHHH-hCCCCHHHHHHHHHh----hcHHHHHHHHHHHHHh
Q 007407 354 ALRMALDEIPDSVRLWKALVEISS-------EEEARILLHRAVE-CCPLDVELWLALVRL----ETYGVARSVLNKARKK 421 (605)
Q Consensus 354 vl~kAle~~P~~~~lw~~l~~le~-------~e~A~~~l~rAl~-~~P~~~~lw~aLa~l----e~~e~A~~vL~~al~~ 421 (605)
.+...++ .++|+.+|++|++ +.|++..+|..++.+ +++++|+.+|+++++.
T Consensus 66 -----------------~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 128 (308)
T 2ond_A 66 -----------------LLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI 128 (308)
T ss_dssp -----------------HHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred -----------------hhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Confidence 0111223 3788889999998 688888888888765 3688899999999998
Q ss_pred CCCCHH-HHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCch
Q 007407 422 LPKERA-IWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADR-AGSVVTCVAIITNTIEIGVDEE 498 (605)
Q Consensus 422 ~p~~~~-iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~-~g~~~~A~~i~~~al~~~p~~~ 498 (605)
.|.++. +|+.++.++ +.|++++|..+|+++++..|. ....|+..+..... .|+++.|+.+|++++...|+
T Consensus 129 ~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-----~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~-- 201 (308)
T 2ond_A 129 EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-----RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-- 201 (308)
T ss_dssp SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-----CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT--
T ss_pred cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--
Confidence 888876 899999877 888899999999999887654 35678777665443 68899999999999999887
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---cC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 007407 499 DKKRTWVADVEECKKRGSIETARAIFSPACTV---FL-TKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAE 569 (605)
Q Consensus 499 ~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~---~P-~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~ 569 (605)
+..+|..++.++...|++++|+.+|++++.. .| ....+|..++.++..+|+.+.|..+++++++.+|++.
T Consensus 202 -~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 202 -IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp -CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred -cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence 7889999999999999999999999999985 45 4788999999999999999999999999999999754
No 27
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.87 E-value=4.5e-20 Score=191.96 Aligned_cols=274 Identities=14% Similarity=0.095 Sum_probs=222.6
Q ss_pred cchhhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcCchhHHHHH
Q 007407 259 TTNSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLARPDEAKSVV 338 (605)
Q Consensus 259 ~~~~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~~~~Ak~~l 338 (605)
......|++.+|..+|+++++.+|.++.+|..++.++...|+++.|...++++++.+|.+..+|...+.++...
T Consensus 72 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~------ 145 (368)
T 1fch_A 72 LRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNE------ 145 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT------
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc------
Confidence 34678899999999999999999999999999999999999999999999999999999999998887664220
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHhhcHHHHHHHHHH
Q 007407 339 AKGVRQIPKSANKIRALRMALDEIPDSVRLWKALVEISSEEEARILLHRAVECCPLDV-ELWLALVRLETYGVARSVLNK 417 (605)
Q Consensus 339 ~~al~~~P~s~~a~~vl~kAle~~P~~~~lw~~l~~le~~e~A~~~l~rAl~~~P~~~-~lw~aLa~le~~e~A~~vL~~ 417 (605)
.....|...|++++...|.+...|..+...... ..+... .....+...++++.|...|++
T Consensus 146 -------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 206 (368)
T 1fch_A 146 -------SLQRQACEILRDWLRYTPAYAHLVTPAEEGAGG------------AGLGPSKRILGSLLSDSLFLEVKELFLA 206 (368)
T ss_dssp -------TCHHHHHHHHHHHHHTSTTTGGGCC---------------------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred -------CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhh------------hcccHHHHHHHHHhhcccHHHHHHHHHH
Confidence 011234455566666666665544333221100 001100 011112256788999999999
Q ss_pred HHHhCCC--CHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 007407 418 ARKKLPK--ERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIG 494 (605)
Q Consensus 418 al~~~p~--~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~ 494 (605)
+++..|. ++.+|..++.+. ..|++++|..+|++++...|. ....|...+..+...|+++.|...+++++...
T Consensus 207 a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 281 (368)
T 1fch_A 207 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-----DYLLWNKLGATLANGNQSEEAVAAYRRALELQ 281 (368)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999 889999999877 999999999999999998765 46789999999999999999999999999999
Q ss_pred CCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007407 495 VDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTK-----------KNIWLKAAQLEKSYGCRESLIALLRKAVT 563 (605)
Q Consensus 495 p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~-----------~~~w~~la~l~~~~g~~e~A~~~lekAl~ 563 (605)
|. +..+|..++..+...|++++|+..|++++...|++ ..+|..++.++...|++++|..++++++.
T Consensus 282 ~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 282 PG---YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp TT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred CC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 88 78899999999999999999999999999999988 89999999999999999999999998876
Q ss_pred hC
Q 007407 564 YC 565 (605)
Q Consensus 564 ~~ 565 (605)
..
T Consensus 359 ~~ 360 (368)
T 1fch_A 359 TL 360 (368)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.87 E-value=7e-20 Score=186.50 Aligned_cols=276 Identities=12% Similarity=0.026 Sum_probs=211.4
Q ss_pred hhhhhhhhhhhccccccccCCccccCchhHHhhhhhhcccchhhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhc
Q 007407 220 GEGRGKILTLKLDGISDSVTGLTVFDPSGYLTRMNDLKITTNSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELAN 299 (605)
Q Consensus 220 ~~~R~~~l~~kld~~~~~~~~~~~~dp~~yl~~L~~~~~~~~~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g 299 (605)
..++..+...+++.+...+......+|....... ..+......|++++|...|+++++.+|.++.+|..++.++...|
T Consensus 26 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~ 103 (327)
T 3cv0_A 26 EEGLSMLKLANLAEAALAFEAVCQAAPEREEAWR--SLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 103 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH--HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcC
Confidence 4455566666778777655555556666432222 22344678999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHhhcCchhHHHHHHHHHhhCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHhCCHH
Q 007407 300 EEAAARKLITKGCNMCPKNEDVWLEACRLARPDEAKSVVAKGVRQIPKSANKIRALRMALDEIPDSVRLWKALVEISSEE 379 (605)
Q Consensus 300 ~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~~~~Ak~~l~~al~~~P~s~~a~~vl~kAle~~P~~~~lw~~l~~le~~e 379 (605)
+++.|...+++++..+|.+..+|..... ..|.....+
T Consensus 104 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~---------- 140 (327)
T 3cv0_A 104 NANAALASLRAWLLSQPQYEQLGSVNLQ---------------------------------ADVDIDDLN---------- 140 (327)
T ss_dssp CHHHHHHHHHHHHHTSTTTTTC----------------------------------------------------------
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHhH---------------------------------HHHHHHHHH----------
Confidence 9999999999999999987654432210 011111000
Q ss_pred HHHHHHHHHHHhCCCCHHHHH----HHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHH
Q 007407 380 EARILLHRAVECCPLDVELWL----ALVRLETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRA 454 (605)
Q Consensus 380 ~A~~~l~rAl~~~P~~~~lw~----aLa~le~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~ 454 (605)
|+ .+...+++++|...++++++..|.+..+|..++.+. ..|++++|..+++++++.
T Consensus 141 -------------------~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 201 (327)
T 3cv0_A 141 -------------------VQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL 201 (327)
T ss_dssp ------------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------------------HHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 11 122334667777777777777777788888888766 888888888888888887
Q ss_pred hccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-
Q 007407 455 LQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLT- 533 (605)
Q Consensus 455 ~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~- 533 (605)
.|. ....|...+..+...|++++|...+++++...|. +..+|..++..+...|++++|+..|++++...|.
T Consensus 202 ~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 273 (327)
T 3cv0_A 202 RPD-----DAQLWNKLGATLANGNRPQEALDAYNRALDINPG---YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGG 273 (327)
T ss_dssp CTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS
T ss_pred CCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 664 4567888888888888899999999999988887 7788889999999999999999999999999999
Q ss_pred -----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 007407 534 -----------KKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQ 567 (605)
Q Consensus 534 -----------~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~ 567 (605)
...+|..++.++...|++++|..++++++...|+
T Consensus 274 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 318 (327)
T 3cv0_A 274 TTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAK 318 (327)
T ss_dssp CC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHH
T ss_pred ccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcch
Confidence 7899999999999999999999999988877653
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.87 E-value=2.7e-20 Score=194.36 Aligned_cols=230 Identities=12% Similarity=0.010 Sum_probs=199.8
Q ss_pred HHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh----hcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHH
Q 007407 372 LVEISSEEEARILLHRAVECCPLDVELWLALVRL----ETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGK 446 (605)
Q Consensus 372 l~~le~~e~A~~~l~rAl~~~P~~~~lw~aLa~l----e~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~ 446 (605)
+...+++++|+.+|+++++..|.+..+|..++.+ +++++|...|+++++..|.+..+|..++.+. ..|++++|..
T Consensus 75 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 154 (365)
T 4eqf_A 75 RLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACE 154 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHH
Confidence 4556799999999999999999999999988754 5799999999999999999999999999988 9999999999
Q ss_pred HHHHHHHHhccCcccc-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHH
Q 007407 447 IIERGIRALQGEEVVI-----DRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETAR 521 (605)
Q Consensus 447 i~~~al~~~p~~~~~~-----~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~ 521 (605)
+|+++++..|...... ....+...+..+...|.+++|..++++++..+|... +..+|..++..+...|++++|+
T Consensus 155 ~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~~l~~~~~~~g~~~~A~ 233 (365)
T 4eqf_A 155 ALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMI-DPDLQTGLGVLFHLSGEFNRAI 233 (365)
T ss_dssp HHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSC-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCcc-CHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999877632110 122333457788889999999999999999988722 5678999999999999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCC
Q 007407 522 AIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPN 601 (605)
Q Consensus 522 ~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~ 601 (605)
.+|+++++..|++..+|..+|.++...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|++|++.+|+
T Consensus 234 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 313 (365)
T 4eqf_A 234 DAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRK 313 (365)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred C
Q 007407 602 S 602 (605)
Q Consensus 602 ~ 602 (605)
+
T Consensus 314 ~ 314 (365)
T 4eqf_A 314 S 314 (365)
T ss_dssp C
T ss_pred c
Confidence 4
No 30
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.85 E-value=2e-19 Score=194.33 Aligned_cols=302 Identities=12% Similarity=0.034 Sum_probs=222.0
Q ss_pred chhhhccHHHHHHHHHHHHHhC--------CCChHHHHHH--HHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhc
Q 007407 260 TNSELRDILKARKIVRAVTKNS--------PKKPLGWIQA--ARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLA 329 (605)
Q Consensus 260 ~~~~~gd~~kAr~ll~~al~~~--------P~~~~~wia~--Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~ 329 (605)
.+...|++++|...|+++++++ +..+..+... +.+....+++++|+..|+++++.+|++.++|..++.+.
T Consensus 103 ~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~ 182 (472)
T 4g1t_A 103 VYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIAS 182 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4678899999999999998863 3445555444 44444456899999999999999999999987766442
Q ss_pred -------CchhHHHHHHHHHhhCCCc---------------------HHHHHHHHHHHHhCCCcHHHHHHHHH----hCC
Q 007407 330 -------RPDEAKSVVAKGVRQIPKS---------------------ANKIRALRMALDEIPDSVRLWKALVE----ISS 377 (605)
Q Consensus 330 -------~~~~Ak~~l~~al~~~P~s---------------------~~a~~vl~kAle~~P~~~~lw~~l~~----le~ 377 (605)
..+.|...+.++++.+|.+ ..+.+.|++++...|.+...|..++. .++
T Consensus 183 ~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~ 262 (472)
T 4g1t_A 183 YRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDE 262 (472)
T ss_dssp HHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC
T ss_pred HHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCc
Confidence 2256788899999999987 35778899999999999998887654 458
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHhh-----------------------cHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 007407 378 EEEARILLHRAVECCPLDVELWLALVRLE-----------------------TYGVARSVLNKARKKLPKERAIWIAAAK 434 (605)
Q Consensus 378 ~e~A~~~l~rAl~~~P~~~~lw~aLa~le-----------------------~~e~A~~vL~~al~~~p~~~~iwi~~a~ 434 (605)
+++|+..|.++++..|++..+|..++.++ .++.|...+++++...|.+..+|..+|.
T Consensus 263 ~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~ 342 (472)
T 4g1t_A 263 PDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILAS 342 (472)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHH
T ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHH
Confidence 89999999999999999999998776432 2567899999999999999999999998
Q ss_pred HH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHH
Q 007407 435 LE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVA-DRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECK 512 (605)
Q Consensus 435 Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~-e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~ 512 (605)
+. ..|++++|..+|+++++..+... .....+..++..+ ...|+.++|...|++++.+.|. .....
T Consensus 343 ~~~~~~~~~~A~~~~~kaL~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~---~~~~~-------- 409 (472)
T 4g1t_A 343 LHALADQYEEAEYYFQKEFSKELTPV--AKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK---SREKE-------- 409 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSCCCHH--HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCC---CHHHH--------
T ss_pred HHHHhccHHHHHHHHHHHHhcCCCCh--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc---cHHHH--------
Confidence 87 99999999999999998765421 1223455566544 3568999999999999999988 32211
Q ss_pred HcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 007407 513 KRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGA 576 (605)
Q Consensus 513 ~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a 576 (605)
+....+..++++++..+|++..+|..+|.++...|++++|++.|++|++..|.+|..+...|
T Consensus 410 --~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 410 --KMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp --HHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred --HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 12355677889999999999999999999999999999999999999999988877655443
No 31
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.84 E-value=2.1e-19 Score=191.18 Aligned_cols=195 Identities=9% Similarity=0.011 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHH----hhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHH
Q 007407 378 EEEARILLHRAVECCPLDVELWLALVR----LETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGI 452 (605)
Q Consensus 378 ~e~A~~~l~rAl~~~P~~~~lw~aLa~----le~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al 452 (605)
+++|+..|+++++..|++..+|..++. ++++++|...|+++++..|.+..+|..++.+. ..|++++|...|+++|
T Consensus 148 ~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al 227 (382)
T 2h6f_A 148 LHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLL 227 (382)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 444444444444444444444443332 23444555555555555555555555555433 4455555555555555
Q ss_pred HHhccCcccccHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHHhCCCchhhHHHHHHHHHHHHHcC--CHHHHHHHH
Q 007407 453 RALQGEEVVIDRDTWMKEAEVADR-AGSVVTC-----VAIITNTIEIGVDEEDKKRTWVADVEECKKRG--SIETARAIF 524 (605)
Q Consensus 453 ~~~p~~~~~~~~~~wl~~A~~~e~-~g~~~~A-----~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g--~~~~A~~i~ 524 (605)
+..|. +...|...+..+.. .|..+.| ...|+++|.++|+ +..+|+.++.++...| ++++|...+
T Consensus 228 ~l~P~-----~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~---~~~a~~~l~~ll~~~g~~~~~~a~~~~ 299 (382)
T 2h6f_A 228 KEDVR-----NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH---NESAWNYLKGILQDRGLSKYPNLLNQL 299 (382)
T ss_dssp HHCTT-----CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHTTTCGGGCHHHHHHH
T ss_pred HhCCC-----CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHccCccchHHHHHHH
Confidence 55443 34455555555544 3332444 5788899999988 7889999998888877 689999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcC--------C-HHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHH
Q 007407 525 SPACTVFLTKKNIWLKAAQLEKSYG--------C-RESLIALLRKA-VTYCPQAEVLWLMGAKEKWL 581 (605)
Q Consensus 525 ~~al~~~P~~~~~w~~la~l~~~~g--------~-~e~A~~~lekA-l~~~P~~~~l~l~~a~~~~~ 581 (605)
.++ +..|++..++..+|.++.+.| + +++|+++|+++ ++.+|.....|..++..+..
T Consensus 300 ~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 300 LDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 888 889999999999999998874 2 58999999999 99999999999999886653
No 32
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.83 E-value=6.9e-20 Score=194.94 Aligned_cols=234 Identities=11% Similarity=0.028 Sum_probs=207.6
Q ss_pred HhCCCcHHHHHHH----HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH----hhc-HHHHHHHHHHHHHhCCCCHHHHH
Q 007407 360 DEIPDSVRLWKAL----VEISSEEEARILLHRAVECCPLDVELWLALVR----LET-YGVARSVLNKARKKLPKERAIWI 430 (605)
Q Consensus 360 e~~P~~~~lw~~l----~~le~~e~A~~~l~rAl~~~P~~~~lw~aLa~----le~-~e~A~~vL~~al~~~p~~~~iwi 430 (605)
...|++..+|..+ ...+++++|+..|+++++..|.+..+|..++. ++. +++|...|+++++..|.+..+|.
T Consensus 91 ~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~ 170 (382)
T 2h6f_A 91 IYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWH 170 (382)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 3445555555544 34457899999999999999999999987664 455 99999999999999999999999
Q ss_pred HHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Q 007407 431 AAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVE 509 (605)
Q Consensus 431 ~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~ 509 (605)
.++.+. ..|++++|...|++++...|. +...|...+..+...|.++.|...|+++|.++|. +..+|..++.
T Consensus 171 ~~g~~~~~~g~~~eAl~~~~kal~ldP~-----~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~---~~~a~~~lg~ 242 (382)
T 2h6f_A 171 HRRVLVEWLRDPSQELEFIADILNQDAK-----NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR---NNSVWNQRYF 242 (382)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT---CHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCcc-----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---CHHHHHHHHH
Confidence 999877 899999999999999999876 5789999999999999999999999999999998 8999999999
Q ss_pred HHHH-cCCHHHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 007407 510 ECKK-RGSIETA-----RAIFSPACTVFLTKKNIWLKAAQLEKSYG--CRESLIALLRKAVTYCPQAEVLWLMGAKEKWL 581 (605)
Q Consensus 510 ~~~~-~g~~~~A-----~~i~~~al~~~P~~~~~w~~la~l~~~~g--~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~ 581 (605)
++.. .|.+++| +..|.++++++|++..+|+.++.++...| ++++|++.++++ ..+|+++.++..+|.++.+
T Consensus 243 ~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~ 321 (382)
T 2h6f_A 243 VISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYED 321 (382)
T ss_dssp HHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHH
T ss_pred HHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHH
Confidence 9999 6665777 58999999999999999999999999988 689999999998 8899999999999999988
Q ss_pred cC--------C-hHHHHHHHHHH-HHHCCCC
Q 007407 582 AG--------D-VPATRDILQEA-YAAIPNS 602 (605)
Q Consensus 582 ~g--------d-~~~Ar~il~kA-l~~~P~~ 602 (605)
.| + +++|..+|+++ ++++|..
T Consensus 322 ~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r 352 (382)
T 2h6f_A 322 MLENQCDNKEDILNKALELCEILAKEKDTIR 352 (382)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred HhcccccchHHHHHHHHHHHHHHHHHhCchh
Confidence 64 3 59999999999 9999964
No 33
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.83 E-value=4.6e-19 Score=172.89 Aligned_cols=181 Identities=15% Similarity=0.076 Sum_probs=132.3
Q ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHc--------
Q 007407 407 TYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRA-------- 477 (605)
Q Consensus 407 ~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~-------- 477 (605)
++++|...|+++++..|.++.+|..+|.+. ..|++++|...|+++++..|. +...|..++..+...
T Consensus 20 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-----~~~a~~~lg~~~~~~~~~~~~~~ 94 (217)
T 2pl2_A 20 RYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-----YLGGYMVLSEAYVALYRQAEDRE 94 (217)
T ss_dssp CHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHHHTCSSHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHhhhhhhhhc
Confidence 455555555555555555555555555544 555555555555555555443 334555555555555
Q ss_pred ---CCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHH
Q 007407 478 ---GSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESL 554 (605)
Q Consensus 478 ---g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A 554 (605)
|++++|...|++++..+|+ +..+|+.++.++...|++++|+..|+++++.+ +++.+|..+|.++...|++++|
T Consensus 95 ~~~g~~~~A~~~~~~al~~~P~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A 170 (217)
T 2pl2_A 95 RGKGYLEQALSVLKDAERVNPR---YAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEA 170 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHH
T ss_pred ccccCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHH
Confidence 8899999999999999998 88899999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 007407 555 IALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAY 596 (605)
Q Consensus 555 ~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl 596 (605)
+..|++++..+|+++.++..+|.++...|++++|...|+++-
T Consensus 171 ~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 171 LAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999998874
No 34
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.83 E-value=5.6e-19 Score=173.45 Aligned_cols=214 Identities=12% Similarity=0.029 Sum_probs=194.5
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh----hcHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHH-HcCC
Q 007407 373 VEISSEEEARILLHRAVECCPLDVELWLALVRL----ETYGVARSVLNKARKKLPKE-------RAIWIAAAKLE-ANGN 440 (605)
Q Consensus 373 ~~le~~e~A~~~l~rAl~~~P~~~~lw~aLa~l----e~~e~A~~vL~~al~~~p~~-------~~iwi~~a~Le-~~g~ 440 (605)
...+++++|+.+|+++++.. .+..+|..++.. ++++.|...+++++...|.+ +.+|..++.+. ..|+
T Consensus 16 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 94 (258)
T 3uq3_A 16 YKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGD 94 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHccc
Confidence 45568999999999999999 888888877653 58999999999999998876 68899999877 9999
Q ss_pred HHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHH
Q 007407 441 TSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETA 520 (605)
Q Consensus 441 ~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A 520 (605)
+++|...|++++...|. +..+...|.++.|...++.++..+|. ...+|...+..+...|++++|
T Consensus 95 ~~~A~~~~~~a~~~~~~-------------~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~A 158 (258)
T 3uq3_A 95 LKKTIEYYQKSLTEHRT-------------ADILTKLRNAEKELKKAEAEAYVNPE---KAEEARLEGKEYFTKSDWPNA 158 (258)
T ss_dssp HHHHHHHHHHHHHHCCC-------------HHHHHHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcCch-------------hHHHHHHhHHHHHHHHHHHHHHcCcc---hHHHHHHHHHHHHHhcCHHHH
Confidence 99999999999997654 23455567789999999999998876 888999999999999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHC-
Q 007407 521 RAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAI- 599 (605)
Q Consensus 521 ~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~- 599 (605)
+..|+++++.+|.+..+|..+|.++...|++++|+..|++++..+|+++.+|..+|.++...|++++|...|+++++.+
T Consensus 159 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 238 (258)
T 3uq3_A 159 VKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDA 238 (258)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -----CCCC
Q 007407 600 -----PNSE 603 (605)
Q Consensus 600 -----P~~~ 603 (605)
|++.
T Consensus 239 ~~~~~p~~~ 247 (258)
T 3uq3_A 239 EVNNGSSAR 247 (258)
T ss_dssp HHHTTTTHH
T ss_pred hhcCCCchH
Confidence 8764
No 35
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.81 E-value=1.1e-18 Score=173.77 Aligned_cols=224 Identities=10% Similarity=-0.016 Sum_probs=197.8
Q ss_pred HHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh----hcHHHHHHHHHHHHHhCCCC----HHHHHHHHHHH-HcCCHH
Q 007407 372 LVEISSEEEARILLHRAVECCPLDVELWLALVRL----ETYGVARSVLNKARKKLPKE----RAIWIAAAKLE-ANGNTS 442 (605)
Q Consensus 372 l~~le~~e~A~~~l~rAl~~~P~~~~lw~aLa~l----e~~e~A~~vL~~al~~~p~~----~~iwi~~a~Le-~~g~~~ 442 (605)
+...+++++|+.+|+++++..|.+..+|..++.+ +++++|...++++++ .|.+ ..+|..+|.+. ..|+++
T Consensus 13 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~ 91 (272)
T 3u4t_A 13 LFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDS 91 (272)
T ss_dssp HHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHH
Confidence 3455689999999999999999999888877654 579999999999999 5544 34588999877 999999
Q ss_pred HHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHH
Q 007407 443 MVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARA 522 (605)
Q Consensus 443 ~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~ 522 (605)
+|...|+++++..|. ....|...|..+...|+++.|...+++++..+|. +..+|..++..+...+++++|..
T Consensus 92 ~A~~~~~~a~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 92 LAIQQYQAAVDRDTT-----RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT---DPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHHHHHHHHHHHSTT-----CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC---CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcCcc-----cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC---cHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998776 4568999999999999999999999999999888 78899999955555679999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhC---CCC-----HHHHHHHHHHHHHcCChHHHHHH
Q 007407 523 IFSPACTVFLTKKNIWLKAAQLEKSYGC---RESLIALLRKAVTYC---PQA-----EVLWLMGAKEKWLAGDVPATRDI 591 (605)
Q Consensus 523 i~~~al~~~P~~~~~w~~la~l~~~~g~---~e~A~~~lekAl~~~---P~~-----~~l~l~~a~~~~~~gd~~~Ar~i 591 (605)
+|+++++.+|++..+|..++.++...|+ +++|...|++++... |+. ..+|..+|.++...|++++|..+
T Consensus 164 ~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 243 (272)
T 3u4t_A 164 SFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAA 243 (272)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999999999999999998 888999999999986 542 36788899999999999999999
Q ss_pred HHHHHHHCCCCCC
Q 007407 592 LQEAYAAIPNSEE 604 (605)
Q Consensus 592 l~kAl~~~P~~~~ 604 (605)
|+++++++|+++.
T Consensus 244 ~~~al~~~p~~~~ 256 (272)
T 3u4t_A 244 WKNILALDPTNKK 256 (272)
T ss_dssp HHHHHHHCTTCHH
T ss_pred HHHHHhcCccHHH
Confidence 9999999999863
No 36
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.81 E-value=5.8e-18 Score=173.20 Aligned_cols=254 Identities=9% Similarity=-0.009 Sum_probs=163.4
Q ss_pred hhhccHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcCchhHHHHHHH
Q 007407 262 SELRDILKARKIVRAVTKNSPKK-PLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLARPDEAKSVVAK 340 (605)
Q Consensus 262 ~~~gd~~kAr~ll~~al~~~P~~-~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~~~~Ak~~l~~ 340 (605)
.-.|+++.|...++++...+|.+ .+..+.+++.+...|+++.|+..+.. .+| +.+ . +...+
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~--~~~-~----------a~~~l-- 71 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSA--PEL-Q----------AVRMF-- 71 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSC--HHH-H----------HHHHH--
T ss_pred HHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCC--hhH-H----------HHHHH--
Confidence 45677777777777766666665 34566667777777777777765532 111 110 0 00000
Q ss_pred HHhhCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHh----hcHHHHHHH
Q 007407 341 GVRQIPKSANKIRALRMALDEIPDSVRLWKALVEISSEEEARILLHRAVEC--CPLDVELWLALVRL----ETYGVARSV 414 (605)
Q Consensus 341 al~~~P~s~~a~~vl~kAle~~P~~~~lw~~l~~le~~e~A~~~l~rAl~~--~P~~~~lw~aLa~l----e~~e~A~~v 414 (605)
-..+...++.+.|+..|++++.. .|++..+|+.++.+ +++++|...
T Consensus 72 ----------------------------a~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~ 123 (291)
T 3mkr_A 72 ----------------------------AEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRT 123 (291)
T ss_dssp ----------------------------HHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ----------------------------HHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 00111223567788888887765 47777777766543 467777777
Q ss_pred HHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHH--HHHHHHHcCCHHHHHHHHHHHH
Q 007407 415 LNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMK--EAEVADRAGSVVTCVAIITNTI 491 (605)
Q Consensus 415 L~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~--~A~~~e~~g~~~~A~~i~~~al 491 (605)
|++ |.++++|..++.+. ..|+.++|.+.|+++++..|.. ....+. +...+...|.+++|..+|++++
T Consensus 124 l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~-----~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l 193 (291)
T 3mkr_A 124 LHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDA-----TLTQLATAWVSLAAGGEKLQDAYYIFQEMA 193 (291)
T ss_dssp HTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred HhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCc-----HHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 776 77777777777766 7777777777777777765542 111111 1223334466777777777777
Q ss_pred HhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhCCCCHH
Q 007407 492 EIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRES-LIALLRKAVTYCPQAEV 570 (605)
Q Consensus 492 ~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~-A~~~lekAl~~~P~~~~ 570 (605)
...|+ +..+|...+..+...|++++|...|+++++.+|+++.+|..++.++...|+.++ +..+++++++.+|+++.
T Consensus 194 ~~~p~---~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~ 270 (291)
T 3mkr_A 194 DKCSP---TLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF 270 (291)
T ss_dssp HHSCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH
T ss_pred HhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChH
Confidence 77776 667777777777777777777777777777777777777777777777777654 56777777777777776
Q ss_pred HHHH
Q 007407 571 LWLM 574 (605)
Q Consensus 571 l~l~ 574 (605)
+...
T Consensus 271 ~~d~ 274 (291)
T 3mkr_A 271 IKEY 274 (291)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 37
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.80 E-value=6e-18 Score=159.08 Aligned_cols=173 Identities=9% Similarity=0.038 Sum_probs=159.0
Q ss_pred CCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhH
Q 007407 423 PKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKK 501 (605)
Q Consensus 423 p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~ 501 (605)
+.+..+|+.+|.+. ..|++++|...|+++++..|. +...|...|..+...|.++.|...+..++...|. ..
T Consensus 2 ge~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~---~~ 73 (184)
T 3vtx_A 2 GETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-----NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT---SA 73 (184)
T ss_dssp --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---CH
T ss_pred CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch---hH
Confidence 45678899999877 899999999999999998876 5678999999999999999999999999999988 78
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 007407 502 RTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWL 581 (605)
Q Consensus 502 ~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~ 581 (605)
.+|...+..+...++++.|...+.+++..+|++..+|..+|.++...|++++|++.|+++++.+|+++.+|..+|.++..
T Consensus 74 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~ 153 (184)
T 3vtx_A 74 EAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEG 153 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHHCCCCC
Q 007407 582 AGDVPATRDILQEAYAAIPNSE 603 (605)
Q Consensus 582 ~gd~~~Ar~il~kAl~~~P~~~ 603 (605)
.|++++|...|++|++.+|+++
T Consensus 154 ~g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 154 KGLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp TTCHHHHHHHHHHHHHTTHHHH
T ss_pred CCCHHHHHHHHHHHHhCCccCH
Confidence 9999999999999999999753
No 38
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.79 E-value=5.5e-18 Score=168.65 Aligned_cols=238 Identities=9% Similarity=-0.030 Sum_probs=128.3
Q ss_pred hhhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcCchhHHHHHHH
Q 007407 261 NSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLARPDEAKSVVAK 340 (605)
Q Consensus 261 ~~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~~~~Ak~~l~~ 340 (605)
....|++++|..+|+++++.+|+++.+|..++.++...|+++.|...++++++ .|.+.++ .+...
T Consensus 13 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~-----------~~~~~--- 77 (272)
T 3u4t_A 13 LFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKA-----------KSADF--- 77 (272)
T ss_dssp HHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTC-----------CHHHH---
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhH-----------HHHHH---
Confidence 45667777777777777777777777777777777777777777777777666 3433211 00000
Q ss_pred HHhhCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh----hcHHHHHHHHH
Q 007407 341 GVRQIPKSANKIRALRMALDEIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALVRL----ETYGVARSVLN 416 (605)
Q Consensus 341 al~~~P~s~~a~~vl~kAle~~P~~~~lw~~l~~le~~e~A~~~l~rAl~~~P~~~~lw~aLa~l----e~~e~A~~vL~ 416 (605)
..+-..+...+++++|+..|+++++..|.+..+|..++.+ ++++.|...|+
T Consensus 78 -------------------------~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 132 (272)
T 3u4t_A 78 -------------------------EYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYME 132 (272)
T ss_dssp -------------------------HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHG
T ss_pred -------------------------HHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 0001122344566666666666666666665555544432 24555555555
Q ss_pred HHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 007407 417 KARKKLPKERAIWIAAA-KLEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGV 495 (605)
Q Consensus 417 ~al~~~p~~~~iwi~~a-~Le~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p 495 (605)
++++..|.++.+|..++ .+...+++ +.|...+++++...|
T Consensus 133 ~al~~~~~~~~~~~~l~~~~~~~~~~---------------------------------------~~A~~~~~~a~~~~p 173 (272)
T 3u4t_A 133 KQIRPTTTDPKVFYELGQAYYYNKEY---------------------------------------VKADSSFVKVLELKP 173 (272)
T ss_dssp GGCCSSCCCHHHHHHHHHHHHHTTCH---------------------------------------HHHHHHHHHHHHHST
T ss_pred HHhhcCCCcHHHHHHHHHHHHHHHHH---------------------------------------HHHHHHHHHHHHhCc
Confidence 55555555555555555 33333344 444445555555444
Q ss_pred CchhhHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhc---CC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007407 496 DEEDKKRTWVADVEECKKRGS---IETARAIFSPACTVF---LT-----KKNIWLKAAQLEKSYGCRESLIALLRKAVTY 564 (605)
Q Consensus 496 ~~~~~~~~~~~~a~~~~~~g~---~~~A~~i~~~al~~~---P~-----~~~~w~~la~l~~~~g~~e~A~~~lekAl~~ 564 (605)
+ +...|+..+..+...++ +++|+..|+++++.. |+ ...+|..+|.++...|++++|+..|+++++.
T Consensus 174 ~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 174 N---IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp T---CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred c---chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4 34444444444444444 455555555555544 33 1245555666666666666666666666666
Q ss_pred CCCCHHHHHHHHHHHH
Q 007407 565 CPQAEVLWLMGAKEKW 580 (605)
Q Consensus 565 ~P~~~~l~l~~a~~~~ 580 (605)
+|+++.++-.++.+..
T Consensus 251 ~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 251 DPTNKKAIDGLKMKLE 266 (272)
T ss_dssp CTTCHHHHHHHC----
T ss_pred CccHHHHHHHhhhhhc
Confidence 6666666655555443
No 39
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.79 E-value=4.3e-17 Score=156.41 Aligned_cols=207 Identities=13% Similarity=0.031 Sum_probs=166.3
Q ss_pred hCCCCHHHHHHHHHh----hcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHH
Q 007407 391 CCPLDVELWLALVRL----ETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRD 465 (605)
Q Consensus 391 ~~P~~~~lw~aLa~l----e~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~ 465 (605)
..|.++.+|..++.. ++++.|...++++++..|.+..+|..++.+. ..|++++|..+|++++...|. ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~ 77 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-----SAE 77 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHH
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-----ChH
Confidence 346666666665543 4678888888888888888888888888766 788888888888888887654 456
Q ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 007407 466 TWMKEAEVADRA-GSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQL 544 (605)
Q Consensus 466 ~wl~~A~~~e~~-g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l 544 (605)
.|...+..+... |+++.|...+++++. .|..+....+|...+..+...|++++|+..|.++++..|++..+|..+|.+
T Consensus 78 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 156 (225)
T 2vq2_A 78 INNNYGWFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELART 156 (225)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 778888888888 888888888888888 333233677888888888888888888888888888888888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCC
Q 007407 545 EKSYGCRESLIALLRKAVTYCP-QAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSE 603 (605)
Q Consensus 545 ~~~~g~~e~A~~~lekAl~~~P-~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~ 603 (605)
+...|++++|..+|++++..+| .++..|..++.++...|+.+.|..++..+.+.+|+++
T Consensus 157 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 216 (225)
T 2vq2_A 157 KMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSE 216 (225)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCH
Confidence 8888888888888888888888 8888888888888888888888888888888888875
No 40
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.79 E-value=2.1e-17 Score=162.59 Aligned_cols=204 Identities=10% Similarity=-0.033 Sum_probs=172.6
Q ss_pred CCCC-HHHHHHHHH----hhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHH
Q 007407 392 CPLD-VELWLALVR----LETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRD 465 (605)
Q Consensus 392 ~P~~-~~lw~aLa~----le~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~ 465 (605)
.|.+ ..+|..++. .++++.|...|+++++..|.+..+|..++.+. ..|++++|..+|+++++..|. ...
T Consensus 32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~ 106 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-----NAR 106 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHH
T ss_pred chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-----cHH
Confidence 3443 455555543 34688888888888888888888888888877 888899999999998887664 456
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 007407 466 TWMKEAEVADRAGSVVTCVAIITNTIE--IGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQ 543 (605)
Q Consensus 466 ~wl~~A~~~e~~g~~~~A~~i~~~al~--~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~ 543 (605)
.|...+..+...|++++|..++++++. ..|. ...+|..++..+...|++++|..+|.++++..|.+..+|..++.
T Consensus 107 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~ 183 (252)
T 2ho1_A 107 VLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPE---RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMAD 183 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTT---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 788888888888999999999999888 4554 77888888999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCC
Q 007407 544 LEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSE 603 (605)
Q Consensus 544 l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~ 603 (605)
++...|++++|..+|++++...|.+...|..++.++...|++++|..+++++++.+|+++
T Consensus 184 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 243 (252)
T 2ho1_A 184 LLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSL 243 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCH
Confidence 999999999999999999999998888899999998889999999999999999999875
No 41
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.79 E-value=2.7e-17 Score=161.30 Aligned_cols=131 Identities=15% Similarity=-0.035 Sum_probs=100.1
Q ss_pred CHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHH
Q 007407 440 NTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIET 519 (605)
Q Consensus 440 ~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~ 519 (605)
+++++...+++++...|. ....|...|..+...|+++.|...+++++..+|. +..+|...+..+...|++++
T Consensus 120 ~~~~a~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~~~~~~ 191 (258)
T 3uq3_A 120 NAEKELKKAEAEAYVNPE-----KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE---DARGYSNRAAALAKLMSFPE 191 (258)
T ss_dssp HHHHHHHHHHHHHHCCHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCcc-----hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHhCCHHH
Confidence 344555555555554332 3445666666666677777777777777777776 67788888888888999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHH
Q 007407 520 ARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYC------PQAEVLWLMGAKE 578 (605)
Q Consensus 520 A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~------P~~~~l~l~~a~~ 578 (605)
|...|+++++..|++..+|..+|.++...|++++|...|+++++.+ |++..++..++.+
T Consensus 192 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 192 AIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999888 8877777776653
No 42
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.79 E-value=1.7e-17 Score=161.73 Aligned_cols=190 Identities=9% Similarity=0.041 Sum_probs=116.9
Q ss_pred hcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHH
Q 007407 406 ETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCV 484 (605)
Q Consensus 406 e~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~ 484 (605)
++++.|...|+++++..|.+..+|..++.+. ..|++++|..+|+++++..|. ....|...+..+...|+++.|.
T Consensus 37 ~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~la~~~~~~~~~~~A~ 111 (243)
T 2q7f_A 37 GDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSS-----AATAYYGAGNVYVVKEMYKEAK 111 (243)
T ss_dssp -----CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHH
T ss_pred hCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-----chHHHHHHHHHHHHhccHHHHH
Confidence 3455566666666666666666666666554 566666666666666655443 3455566666666666666666
Q ss_pred HHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007407 485 AIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTY 564 (605)
Q Consensus 485 ~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~ 564 (605)
..+++++..+|. +..+|...+..+...|++++|..+|+++++..|++..+|..+|.++...|++++|+.+|++++..
T Consensus 112 ~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 188 (243)
T 2q7f_A 112 DMFEKALRAGME---NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ 188 (243)
T ss_dssp HHHHHHHHHTCC---SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC---CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 666666666655 45556666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCC
Q 007407 565 CPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSE 603 (605)
Q Consensus 565 ~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~ 603 (605)
+|+++.+|..+|.++...|++++|..+|+++++.+|+++
T Consensus 189 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~ 227 (243)
T 2q7f_A 189 DPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHM 227 (243)
T ss_dssp CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCH
T ss_pred CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchH
Confidence 666666666666666666666666666666666666553
No 43
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.78 E-value=1.5e-17 Score=162.10 Aligned_cols=173 Identities=14% Similarity=0.053 Sum_probs=163.0
Q ss_pred CCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhh
Q 007407 422 LPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDK 500 (605)
Q Consensus 422 ~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~ 500 (605)
+|.++.+|+.++.+. ..|++++|...|+++++..|. +...|...|..+...|.++.|...+++++..+|+ +
T Consensus 1 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~---~ 72 (217)
T 2pl2_A 1 MQTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-----DPEALYWLARTQLKLGLVNPALENGKTLVARTPR---Y 72 (217)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---C
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---c
Confidence 478888999999877 999999999999999998876 5788999999999999999999999999999998 8
Q ss_pred HHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 007407 501 KRTWVADVEECKKR-----------GSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAE 569 (605)
Q Consensus 501 ~~~~~~~a~~~~~~-----------g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~ 569 (605)
...|..++.++... |++++|+..|+++++.+|++..+|..+|.++...|++++|+..|++|++.+ +++
T Consensus 73 ~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~ 151 (217)
T 2pl2_A 73 LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTP 151 (217)
T ss_dssp HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCH
T ss_pred HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cch
Confidence 88999999999999 999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCC
Q 007407 570 VLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSE 603 (605)
Q Consensus 570 ~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~ 603 (605)
.+|..+|.++...|++++|...|+++++.+|+++
T Consensus 152 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~ 185 (217)
T 2pl2_A 152 EIRSALAELYLSMGRLDEALAQYAKALEQAPKDL 185 (217)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence 9999999999999999999999999999999875
No 44
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.78 E-value=1.2e-16 Score=163.51 Aligned_cols=254 Identities=9% Similarity=-0.019 Sum_probs=204.4
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhhCCCCH-HHHHHHHhhcCchhHHHHHHHHHhhCCCcHHHHHHHHHHHHhCCCcHHHHH
Q 007407 292 ARLEELANEEAAARKLITKGCNMCPKNE-DVWLEACRLARPDEAKSVVAKGVRQIPKSANKIRALRMALDEIPDSVRLWK 370 (605)
Q Consensus 292 Arle~~~g~~~~Ar~ll~~~l~~~P~~~-~lwle~a~L~~~~~Ak~~l~~al~~~P~s~~a~~vl~kAle~~P~~~~lw~ 370 (605)
++-....|+++.|+..+++.....|.+. +..+.++ .
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~-------------------------------------------r 42 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLY-------------------------------------------R 42 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHH-------------------------------------------H
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHH-------------------------------------------H
Confidence 3445668999999999988777666552 2322222 1
Q ss_pred HHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh----hcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH-HcCCHHH
Q 007407 371 ALVEISSEEEARILLHRAVECCPLDVELWLALVRL----ETYGVARSVLNKARKK--LPKERAIWIAAAKLE-ANGNTSM 443 (605)
Q Consensus 371 ~l~~le~~e~A~~~l~rAl~~~P~~~~lw~aLa~l----e~~e~A~~vL~~al~~--~p~~~~iwi~~a~Le-~~g~~~~ 443 (605)
.++.+++++.|+..++. ..|.+..++..++.+ .+++.|.+.|++++.. .|+++.+|+.+|.+. ..|++++
T Consensus 43 ~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~ 119 (291)
T 3mkr_A 43 AYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDA 119 (291)
T ss_dssp HHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHH
Confidence 23444556666655544 144445555555543 3689999999999876 599999999999877 9999999
Q ss_pred HHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHH--HHHHHHHHcCCHHHHH
Q 007407 444 VGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWV--ADVEECKKRGSIETAR 521 (605)
Q Consensus 444 a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~--~~a~~~~~~g~~~~A~ 521 (605)
|..+|++ | .+...|...+..+.+.|.++.|...+++++..+|+ .....+ .++.++...|++++|.
T Consensus 120 Al~~l~~-----~-----~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~---~~~~~l~~a~~~l~~~~~~~~eA~ 186 (291)
T 3mkr_A 120 ALRTLHQ-----G-----DSLECMAMTVQILLKLDRLDLARKELKKMQDQDED---ATLTQLATAWVSLAAGGEKLQDAY 186 (291)
T ss_dssp HHHHHTT-----C-----CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHCTTHHHHHH
T ss_pred HHHHHhC-----C-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC---cHHHHHHHHHHHHHhCchHHHHHH
Confidence 9999987 3 25778999999999999999999999999999987 332222 2335555679999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHCC
Q 007407 522 AIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPA-TRDILQEAYAAIP 600 (605)
Q Consensus 522 ~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~-Ar~il~kAl~~~P 600 (605)
.+|+++++.+|++..+|..+|.++...|++++|...|++|+..+|+++.+|..++.+++..|+.++ +..+++++++.+|
T Consensus 187 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 187 YIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999999999999998875 6899999999999
Q ss_pred CCCC
Q 007407 601 NSEE 604 (605)
Q Consensus 601 ~~~~ 604 (605)
+++.
T Consensus 267 ~~~~ 270 (291)
T 3mkr_A 267 SHPF 270 (291)
T ss_dssp TCHH
T ss_pred CChH
Confidence 9864
No 45
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.76 E-value=5e-15 Score=161.88 Aligned_cols=312 Identities=11% Similarity=-0.019 Sum_probs=248.9
Q ss_pred hccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----hcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcC------c--
Q 007407 264 LRDILKARKIVRAVTKNSPKKPLGWIQAARLEEL----ANEEAAARKLITKGCNMCPKNEDVWLEACRLAR------P-- 331 (605)
Q Consensus 264 ~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~----~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~------~-- 331 (605)
.+++.+|...|+++++. .++.++..++.++.. .+++++|..+++++++. .+...+..++.++. .
T Consensus 56 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~ 131 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDK 131 (490)
T ss_dssp CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred CcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCH
Confidence 67888888888888875 567888888888877 78888888888888775 46677766665531 1
Q ss_pred hhHHHHHHHHHhhC------------------CCc-HHHHHHHHHHHHhCCCcHHHHHHHHHh--------CCHHHHHHH
Q 007407 332 DEAKSVVAKGVRQI------------------PKS-ANKIRALRMALDEIPDSVRLWKALVEI--------SSEEEARIL 384 (605)
Q Consensus 332 ~~Ak~~l~~al~~~------------------P~s-~~a~~vl~kAle~~P~~~~lw~~l~~l--------e~~e~A~~~ 384 (605)
+.|...|.++.... +.+ ..|...|+++++. .+...+..++.+ .++++|..+
T Consensus 132 ~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 209 (490)
T 2xm6_A 132 AESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQW 209 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHH
Confidence 35666666665532 122 6678889998876 466666655432 378999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHhh--------cHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-H----cCCHHHHHHHHHHH
Q 007407 385 LHRAVECCPLDVELWLALVRLE--------TYGVARSVLNKARKKLPKERAIWIAAAKLE-A----NGNTSMVGKIIERG 451 (605)
Q Consensus 385 l~rAl~~~P~~~~lw~aLa~le--------~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~----~g~~~~a~~i~~~a 451 (605)
|+++++. .+...+..|+.+. +++.|...|+++.+. .++..++.++.+. . .++.++|...|+++
T Consensus 210 ~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a 285 (490)
T 2xm6_A 210 YRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKS 285 (490)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHH
T ss_pred HHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Confidence 9999985 4566666666542 578999999999875 5677888888766 6 77899999999999
Q ss_pred HHHhccCcccccHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcC---CHHHHHHH
Q 007407 452 IRALQGEEVVIDRDTWMKEAEVADRA-----GSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRG---SIETARAI 523 (605)
Q Consensus 452 l~~~p~~~~~~~~~~wl~~A~~~e~~-----g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g---~~~~A~~i 523 (605)
++.. +...+..++..+... +++++|...|++++..+ +...++.++.++...| ++++|+.+
T Consensus 286 ~~~~-------~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~y~~~g~~~~~~~A~~~ 353 (490)
T 2xm6_A 286 AEQG-------NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG-----DATAQANLGAIYFRLGSEEEHKKAVEW 353 (490)
T ss_dssp HTTT-------CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHSCCHHHHHHHHHH
T ss_pred HHcC-------CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhCCCcccHHHHHHH
Confidence 7642 456788888888887 89999999999999875 4567888888888766 88999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHH
Q 007407 524 FSPACTVFLTKKNIWLKAAQLEKS----YGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWL----AGDVPATRDILQEA 595 (605)
Q Consensus 524 ~~~al~~~P~~~~~w~~la~l~~~----~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~----~gd~~~Ar~il~kA 595 (605)
|+++++. +++.+|+.+|.++.. .+++++|...|++|++.. ++..+..+|.++.. .+|+++|...|++|
T Consensus 354 ~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 429 (490)
T 2xm6_A 354 FRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTA 429 (490)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 9999987 789999999999999 899999999999999864 68999999999998 89999999999999
Q ss_pred HHHCCC
Q 007407 596 YAAIPN 601 (605)
Q Consensus 596 l~~~P~ 601 (605)
++..|+
T Consensus 430 ~~~~~~ 435 (490)
T 2xm6_A 430 STNDMN 435 (490)
T ss_dssp HHHHCC
T ss_pred HHCCCC
Confidence 999854
No 46
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.76 E-value=6.7e-17 Score=157.47 Aligned_cols=202 Identities=13% Similarity=0.097 Sum_probs=178.1
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh----hcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHH
Q 007407 373 VEISSEEEARILLHRAVECCPLDVELWLALVRL----ETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKI 447 (605)
Q Consensus 373 ~~le~~e~A~~~l~rAl~~~P~~~~lw~aLa~l----e~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i 447 (605)
...+++++|+.+|+++++..|.+..+|..++.+ ++++.|...++++++..|.+..+|..++.+. ..|++++|..+
T Consensus 34 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 113 (243)
T 2q7f_A 34 SEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDM 113 (243)
T ss_dssp --------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHH
Confidence 344578999999999999999999999887754 5799999999999999999999999999887 99999999999
Q ss_pred HHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007407 448 IERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPA 527 (605)
Q Consensus 448 ~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~a 527 (605)
++++++..|. ....|...+..+...|+++.|...+++++...|. +..+|...+..+...|++++|+.+|+++
T Consensus 114 ~~~~~~~~~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 185 (243)
T 2q7f_A 114 FEKALRAGME-----NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN---DTEARFQFGMCLANEGMLDEALSQFAAV 185 (243)
T ss_dssp HHHHHHHTCC-----SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHhCCC-----CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999998775 4678999999999999999999999999999988 7889999999999999999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 007407 528 CTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLA 582 (605)
Q Consensus 528 l~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~ 582 (605)
+...|++..+|..++.++...|++++|...|++++..+|+++.++..++.+....
T Consensus 186 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 186 TEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHH 240 (243)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-----
T ss_pred HHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999998887765443
No 47
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.75 E-value=4.5e-17 Score=172.32 Aligned_cols=276 Identities=7% Similarity=-0.030 Sum_probs=174.6
Q ss_pred chhhhccHHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcCchhHH
Q 007407 260 TNSELRDILKARKIVRAVTKNSPKKP----LGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLARPDEAK 335 (605)
Q Consensus 260 ~~~~~gd~~kAr~ll~~al~~~P~~~----~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~~~~Ak 335 (605)
.....|+++.|..+|+++++.+|+++ .+|..++.++...|+++.|..+++++++..... ..
T Consensus 57 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----------~~----- 121 (411)
T 4a1s_A 57 RLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM----------ND----- 121 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT----------TC-----
T ss_pred HHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc----------cC-----
Confidence 34566777777777777777777765 356666777777777777777777666542110 00
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHhCCCcHHHH----HHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhcHHHH
Q 007407 336 SVVAKGVRQIPKSANKIRALRMALDEIPDSVRLW----KALVEISSEEEARILLHRAVECCPLDVELWLALVRLETYGVA 411 (605)
Q Consensus 336 ~~l~~al~~~P~s~~a~~vl~kAle~~P~~~~lw----~~l~~le~~e~A~~~l~rAl~~~P~~~~lw~aLa~le~~e~A 411 (605)
.|....+| ..+...+++++|+.+|+++++..+...+
T Consensus 122 --------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------- 161 (411)
T 4a1s_A 122 --------------------------RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGD-------------- 161 (411)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--------------
T ss_pred --------------------------chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc--------------
Confidence 00011111 2233445667777777776654211000
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHH-HcCC-----------------HHHHHHHHHHHHHHhccCcc-cccHHHHHHHHH
Q 007407 412 RSVLNKARKKLPKERAIWIAAAKLE-ANGN-----------------TSMVGKIIERGIRALQGEEV-VIDRDTWMKEAE 472 (605)
Q Consensus 412 ~~vL~~al~~~p~~~~iwi~~a~Le-~~g~-----------------~~~a~~i~~~al~~~p~~~~-~~~~~~wl~~A~ 472 (605)
.|....+|..++.+. ..|+ +++|..++++++...+..+. +.....|...+.
T Consensus 162 ----------~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 231 (411)
T 4a1s_A 162 ----------RLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGN 231 (411)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ----------hHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 111223344444444 4455 56666666666655433211 123346677777
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCc---hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHH
Q 007407 473 VADRAGSVVTCVAIITNTIEIGVDE---EDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTK------KNIWLKAAQ 543 (605)
Q Consensus 473 ~~e~~g~~~~A~~i~~~al~~~p~~---~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~------~~~w~~la~ 543 (605)
.+...|+++.|...+++++...+.. .....+|..++.++...|++++|+..|++++...|.. ..+|..+|.
T Consensus 232 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 311 (411)
T 4a1s_A 232 TYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGN 311 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7778888888888888877765431 1123467777888888888888888888888877643 677788888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCC
Q 007407 544 LEKSYGCRESLIALLRKAVTYCPQA------EVLWLMGAKEKWLAGDVPATRDILQEAYAAIP 600 (605)
Q Consensus 544 l~~~~g~~e~A~~~lekAl~~~P~~------~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P 600 (605)
++...|++++|..+|++++...++. ..++..+|.++...|++++|...|.+|+++.+
T Consensus 312 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 312 TYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 8888888888888888888775422 44677788888888888888888888887764
No 48
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.75 E-value=9.2e-16 Score=147.07 Aligned_cols=209 Identities=10% Similarity=0.043 Sum_probs=186.2
Q ss_pred hCCCcHHHHHHHH----HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh----hcHHHHHHHHHHHHHhCCCCHHHHHHH
Q 007407 361 EIPDSVRLWKALV----EISSEEEARILLHRAVECCPLDVELWLALVRL----ETYGVARSVLNKARKKLPKERAIWIAA 432 (605)
Q Consensus 361 ~~P~~~~lw~~l~----~le~~e~A~~~l~rAl~~~P~~~~lw~aLa~l----e~~e~A~~vL~~al~~~p~~~~iwi~~ 432 (605)
..|++..+|..++ ..+++++|+.+|+++++..|.+..+|..++.+ ++++.|...+++++...|.+..+|..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 82 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY 82 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence 4566777777654 34589999999999999999999999877654 579999999999999999999999999
Q ss_pred HHHH-Hc-CCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Q 007407 433 AKLE-AN-GNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEE 510 (605)
Q Consensus 433 a~Le-~~-g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~ 510 (605)
+.+. .. |++++|..+++++++ .+.. +.....|...+..+...|+++.|...+++++...|. +...|...+..
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~-~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~la~~ 156 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALA-DPTY--PTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ---FPPAFKELART 156 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHT-STTC--SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHc-CcCC--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CchHHHHHHHH
Confidence 9877 89 999999999999998 3221 235678999999999999999999999999999988 78899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 007407 511 CKKRGSIETARAIFSPACTVFL-TKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMG 575 (605)
Q Consensus 511 ~~~~g~~~~A~~i~~~al~~~P-~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~ 575 (605)
+...|++++|..+|+++++..| .+..+|..++.++...|+.+.+..+++.++..+|+++.++..+
T Consensus 157 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 157 KMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 9999999999999999999999 9999999999999999999999999999999999998876554
No 49
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.74 E-value=2e-16 Score=148.54 Aligned_cols=171 Identities=8% Similarity=0.022 Sum_probs=155.3
Q ss_pred CCCHHHHHHHHHh----hcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHH
Q 007407 393 PLDVELWLALVRL----ETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTW 467 (605)
Q Consensus 393 P~~~~lw~aLa~l----e~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~w 467 (605)
+++..+|..++.. +++++|...|+++++..|+++.+|..+|.+. ..|+++++...+.+++...|. ....|
T Consensus 2 ge~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~ 76 (184)
T 3vtx_A 2 GETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-----SAEAY 76 (184)
T ss_dssp --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----CHHHH
T ss_pred CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-----hHHHH
Confidence 3567788877654 5799999999999999999999999999887 999999999999999988765 56788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 007407 468 MKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKS 547 (605)
Q Consensus 468 l~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~ 547 (605)
...+..+...++++.+...+.+++...|. +..+|..++..+...|++++|+..|+++++.+|++..+|..+|.++..
T Consensus 77 ~~~~~~~~~~~~~~~a~~~~~~a~~~~~~---~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~ 153 (184)
T 3vtx_A 77 YILGSANFMIDEKQAAIDALQRAIALNTV---YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEG 153 (184)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcc---chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHH
Confidence 88999999999999999999999999998 788999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHH
Q 007407 548 YGCRESLIALLRKAVTYCPQAEVL 571 (605)
Q Consensus 548 ~g~~e~A~~~lekAl~~~P~~~~l 571 (605)
.|++++|+..|++|++.+|+++..
T Consensus 154 ~g~~~~A~~~~~~al~~~p~~a~~ 177 (184)
T 3vtx_A 154 KGLRDEAVKYFKKALEKEEKKAKY 177 (184)
T ss_dssp TTCHHHHHHHHHHHHHTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCccCHHH
Confidence 999999999999999999976543
No 50
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.74 E-value=1.5e-16 Score=161.22 Aligned_cols=277 Identities=9% Similarity=-0.014 Sum_probs=184.5
Q ss_pred hhhhccHHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcCchhHHH
Q 007407 261 NSELRDILKARKIVRAVTKNSPKKP----LGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLARPDEAKS 336 (605)
Q Consensus 261 ~~~~gd~~kAr~ll~~al~~~P~~~----~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~~~~Ak~ 336 (605)
....|++++|..+|+++++.+|.++ .+|..++.++...|+++.|..++++++...+.. ...
T Consensus 15 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----------~~~----- 79 (338)
T 3ro2_A 15 LCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI----------GDQ----- 79 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----------TCH-----
T ss_pred HHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc----------ccc-----
Confidence 4566667777777777777666663 445566666666666666666666665542100 000
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHhCCCcHHHH----HHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhcHHHHH
Q 007407 337 VVAKGVRQIPKSANKIRALRMALDEIPDSVRLW----KALVEISSEEEARILLHRAVECCPLDVELWLALVRLETYGVAR 412 (605)
Q Consensus 337 ~l~~al~~~P~s~~a~~vl~kAle~~P~~~~lw----~~l~~le~~e~A~~~l~rAl~~~P~~~~lw~aLa~le~~e~A~ 412 (605)
|....+| ..+...+++++|+..|.++++..|......
T Consensus 80 --------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------------- 120 (338)
T 3ro2_A 80 --------------------------LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV------------- 120 (338)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-------------
T ss_pred --------------------------HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCch-------------
Confidence 0001111 223344566677777776666543321100
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHH-HcCC--------------------HHHHHHHHHHHHHHhccCcc-cccHHHHHHH
Q 007407 413 SVLNKARKKLPKERAIWIAAAKLE-ANGN--------------------TSMVGKIIERGIRALQGEEV-VIDRDTWMKE 470 (605)
Q Consensus 413 ~vL~~al~~~p~~~~iwi~~a~Le-~~g~--------------------~~~a~~i~~~al~~~p~~~~-~~~~~~wl~~ 470 (605)
....++..++.+. ..|+ +++|..++++++...+..+. +.....|...
T Consensus 121 -----------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 189 (338)
T 3ro2_A 121 -----------GEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNL 189 (338)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 0012344444444 4444 66677777777665433221 1234567778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCc---hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHH
Q 007407 471 AEVADRAGSVVTCVAIITNTIEIGVDE---EDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTK------KNIWLKA 541 (605)
Q Consensus 471 A~~~e~~g~~~~A~~i~~~al~~~p~~---~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~------~~~w~~l 541 (605)
+..+...|+++.|...+++++...+.. .....+|...+..+...|++++|..+|++++...|.. ..++..+
T Consensus 190 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 269 (338)
T 3ro2_A 190 GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSL 269 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Confidence 888888999999999999988764331 1234578888999999999999999999999987765 7789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCC
Q 007407 542 AQLEKSYGCRESLIALLRKAVTYCPQA------EVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNS 602 (605)
Q Consensus 542 a~l~~~~g~~e~A~~~lekAl~~~P~~------~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~ 602 (605)
|.++...|++++|...|++++...|.. ..++..+|.++...|++++|...|++++++.+..
T Consensus 270 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 270 GNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999886532 4578889999999999999999999999988754
No 51
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.74 E-value=5.5e-16 Score=152.47 Aligned_cols=209 Identities=11% Similarity=0.006 Sum_probs=184.5
Q ss_pred hCCCc-HHHHHHHH----HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh----hcHHHHHHHHHHHHHhCCCCHHHHHH
Q 007407 361 EIPDS-VRLWKALV----EISSEEEARILLHRAVECCPLDVELWLALVRL----ETYGVARSVLNKARKKLPKERAIWIA 431 (605)
Q Consensus 361 ~~P~~-~~lw~~l~----~le~~e~A~~~l~rAl~~~P~~~~lw~aLa~l----e~~e~A~~vL~~al~~~p~~~~iwi~ 431 (605)
..|.+ ..+|..++ ..+++++|+.+|+++++..|.+..+|..++.+ +++++|...++++++..|.+..+|..
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 110 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNN 110 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHH
Confidence 34444 55565543 34588999999999999999999999887754 57999999999999999999999999
Q ss_pred HHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Q 007407 432 AAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEE 510 (605)
Q Consensus 432 ~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~ 510 (605)
++.+. ..|++++|..+|++++. .+. .+.....|...+..+...|++++|...+++++...|. +..+|..++..
T Consensus 111 la~~~~~~g~~~~A~~~~~~~~~-~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~la~~ 184 (252)
T 2ho1_A 111 YGGFLYEQKRYEEAYQRLLEASQ-DTL--YPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN---QPSVALEMADL 184 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTT-CTT--CTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC---CHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHh-Ccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc---cHHHHHHHHHH
Confidence 99877 99999999999999987 111 1235678999999999999999999999999999988 78899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 007407 511 CKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMG 575 (605)
Q Consensus 511 ~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~ 575 (605)
+...|++++|..+|+++++..|.+..+|..++.++...|++++|..+|++++..+|+++.++..+
T Consensus 185 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 185 LYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998876554
No 52
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.73 E-value=3.5e-16 Score=164.07 Aligned_cols=296 Identities=8% Similarity=-0.037 Sum_probs=185.3
Q ss_pred chhhhccHHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcCchhHH
Q 007407 260 TNSELRDILKARKIVRAVTKNSPKKP----LGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLARPDEAK 335 (605)
Q Consensus 260 ~~~~~gd~~kAr~ll~~al~~~P~~~----~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~~~~Ak 335 (605)
.....|++++|..+|+++++.+|.++ .+|..++.++...|+++.|...+++++...+... .
T Consensus 18 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~----------~----- 82 (406)
T 3sf4_A 18 RLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG----------D----- 82 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT----------C-----
T ss_pred HHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc----------c-----
Confidence 34667777777777777777777764 4566677777777777777777777765432110 0
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHhCCCcHHHH----HHHHHhCCHHHHHHHHHHHHHhCCCC------HHHHHHHHH-
Q 007407 336 SVVAKGVRQIPKSANKIRALRMALDEIPDSVRLW----KALVEISSEEEARILLHRAVECCPLD------VELWLALVR- 404 (605)
Q Consensus 336 ~~l~~al~~~P~s~~a~~vl~kAle~~P~~~~lw----~~l~~le~~e~A~~~l~rAl~~~P~~------~~lw~aLa~- 404 (605)
.|....+| ..+..++++++|+..|.++++..|.. ..++..++.
T Consensus 83 --------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 136 (406)
T 3sf4_A 83 --------------------------QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNV 136 (406)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred --------------------------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 00011122 23455668899999999998877643 224444443
Q ss_pred ---hhc--------------------HHHHHHHHHHHHHhCC------CCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHH
Q 007407 405 ---LET--------------------YGVARSVLNKARKKLP------KERAIWIAAAKLE-ANGNTSMVGKIIERGIRA 454 (605)
Q Consensus 405 ---le~--------------------~e~A~~vL~~al~~~p------~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~ 454 (605)
.++ ++.|...+++++...+ ....+|..++.+. ..|++++|...+++++..
T Consensus 137 ~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (406)
T 3sf4_A 137 YHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 216 (406)
T ss_dssp HHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH
T ss_pred HHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 245 6777777777766532 2234566666666 777777777777777777
Q ss_pred hccCcccc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007407 455 LQGEEVVI-DRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDE---EDKKRTWVADVEECKKRGSIETARAIFSPACTV 530 (605)
Q Consensus 455 ~p~~~~~~-~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~---~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~ 530 (605)
.+..+... ....|...|..+...|+++.|...+++++...+.. .....++...+..+...|++++|...|++++..
T Consensus 217 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 217 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 76644321 22366667777777777777777777777765431 112456667777777777777777777777776
Q ss_pred cCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 007407 531 FLTK------KNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQA------EVLWLMGAKEKWLAGDVPATRDILQEAY 596 (605)
Q Consensus 531 ~P~~------~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~------~~l~l~~a~~~~~~gd~~~Ar~il~kAl 596 (605)
.+.. ..+|..+|.++...|++++|...|++++...+.. ..++..++.++...|+...+...+.++.
T Consensus 297 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~ 374 (406)
T 3sf4_A 297 AQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSEN 374 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC--------
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHHHHHHHH
Confidence 5443 5567777777777777777777777777777666 3456666666666666665555444443
No 53
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.73 E-value=1.2e-16 Score=174.76 Aligned_cols=208 Identities=12% Similarity=0.088 Sum_probs=183.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHh----hcH-HHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHH
Q 007407 378 EEEARILLHRAVECCPLDVELWLALVRL----ETY-GVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERG 451 (605)
Q Consensus 378 ~e~A~~~l~rAl~~~P~~~~lw~aLa~l----e~~-e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~a 451 (605)
.+.|+..+..+....|.+..+|..++.. +++ ++|...|+++++..|.+..+|..+|.+. ..|++++|...|+++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4566777777788888888888877764 468 8899999999999999888999988877 888999999999999
Q ss_pred HHHhccCcccccHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHc--------
Q 007407 452 IRALQGEEVVIDRDTWMKEAEVADRA---------GSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKR-------- 514 (605)
Q Consensus 452 l~~~p~~~~~~~~~~wl~~A~~~e~~---------g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~-------- 514 (605)
++..|. ...|..++..+... |++++|...|++++..+|+ +..+|..++..+...
T Consensus 164 l~~~p~------~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~~~~~ 234 (474)
T 4abn_A 164 LTHCKN------KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL---DGRSWYILGNAYLSLYFNTGQNP 234 (474)
T ss_dssp HTTCCC------HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HhhCCC------HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHhhcccc
Confidence 887653 36788888888888 8999999999999999988 788999999999988
Q ss_pred CCHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 007407 515 GSIETARAIFSPACTVFL---TKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDI 591 (605)
Q Consensus 515 g~~~~A~~i~~~al~~~P---~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~i 591 (605)
|++++|+..|+++++.+| ++..+|+.+|.++...|++++|+..|++|+..+|+++.+|..++.++...|++++|...
T Consensus 235 g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 235 KISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 99999999999999999999999999999999999999999999999999999999876
Q ss_pred HHH
Q 007407 592 LQE 594 (605)
Q Consensus 592 l~k 594 (605)
+.+
T Consensus 315 ~~~ 317 (474)
T 4abn_A 315 KGK 317 (474)
T ss_dssp TTT
T ss_pred hcc
Confidence 543
No 54
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.72 E-value=2.4e-16 Score=165.28 Aligned_cols=278 Identities=8% Similarity=-0.044 Sum_probs=215.0
Q ss_pred CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCH----HHHHHHHhhcCc----hhHHHHHHHHHhhCCCcHHHHH
Q 007407 282 PKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNE----DVWLEACRLARP----DEAKSVVAKGVRQIPKSANKIR 353 (605)
Q Consensus 282 P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~----~lwle~a~L~~~----~~Ak~~l~~al~~~P~s~~a~~ 353 (605)
+.....|+..+..+...|+++.|..+++++++..|.+. .+|...+.++.. +.|...+.
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-------------- 71 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHH-------------- 71 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHH--------------
Confidence 34566788899999999999999999999999999985 456666655321 23333332
Q ss_pred HHHHHHHhCCCcHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH----HhhcHHHHHHHHHHHHHhCCCC----
Q 007407 354 ALRMALDEIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALV----RLETYGVARSVLNKARKKLPKE---- 425 (605)
Q Consensus 354 vl~kAle~~P~~~~lw~~l~~le~~e~A~~~l~rAl~~~P~~~~lw~aLa----~le~~e~A~~vL~~al~~~p~~---- 425 (605)
+++...+ ...+ .|....+|..++ .+++++.|...+++++...|..
T Consensus 72 ---~al~~~~----------~~~~--------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 124 (406)
T 3sf4_A 72 ---HDLTLAR----------TIGD--------------QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV 124 (406)
T ss_dssp ---HHHHHHH----------HTTC--------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred ---HHHHHHH----------hccc--------------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccc
Confidence 2222100 0011 123344444444 4468999999999999887642
Q ss_pred --HHHHHHHHHHH-HcCC--------------------HHHHHHHHHHHHHHhccCcc-cccHHHHHHHHHHHHHcCCHH
Q 007407 426 --RAIWIAAAKLE-ANGN--------------------TSMVGKIIERGIRALQGEEV-VIDRDTWMKEAEVADRAGSVV 481 (605)
Q Consensus 426 --~~iwi~~a~Le-~~g~--------------------~~~a~~i~~~al~~~p~~~~-~~~~~~wl~~A~~~e~~g~~~ 481 (605)
..++..++.+. ..|+ +++|..++.+++......+. +.....|...|..+...|+++
T Consensus 125 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 204 (406)
T 3sf4_A 125 GEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFR 204 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHH
T ss_pred chHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHH
Confidence 44677888877 8888 99999999999887655432 345678889999999999999
Q ss_pred HHHHHHHHHHHhCCCc---hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHH
Q 007407 482 TCVAIITNTIEIGVDE---EDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTK------KNIWLKAAQLEKSYGCRE 552 (605)
Q Consensus 482 ~A~~i~~~al~~~p~~---~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~------~~~w~~la~l~~~~g~~e 552 (605)
.|...+++++...+.. .....+|...+..+...|++++|..+|++++...|.. ..+|..+|.++...|+++
T Consensus 205 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 284 (406)
T 3sf4_A 205 DAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYE 284 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHH
Confidence 9999999999874432 2345678899999999999999999999999988766 788999999999999999
Q ss_pred HHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCC
Q 007407 553 SLIALLRKAVTYCPQA------EVLWLMGAKEKWLAGDVPATRDILQEAYAAIP 600 (605)
Q Consensus 553 ~A~~~lekAl~~~P~~------~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P 600 (605)
+|...|++++...+.. ..++..+|.++...|++++|...|.+|+++.+
T Consensus 285 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 338 (406)
T 3sf4_A 285 KAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 338 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 9999999999986533 66888999999999999999999999998754
No 55
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.72 E-value=3.1e-16 Score=152.76 Aligned_cols=173 Identities=12% Similarity=0.036 Sum_probs=94.3
Q ss_pred CHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHH
Q 007407 425 ERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRT 503 (605)
Q Consensus 425 ~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~ 503 (605)
++..|+..|... ..|++++|...|+++++..|.. +...|...|..+...|++++|...+++++..+|. +..+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~ 78 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQ----DSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN---LANA 78 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS---HHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCC----CcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc---hHHH
Confidence 344455555433 4555555555555555544310 2234444455555555555555555555555544 4445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHH
Q 007407 504 WVADVEECKKRGSIETARAIFSPACTVFLTKK-------NIWLKAAQLEKSYGCRESLIALLRKAVTYCPQ--AEVLWLM 574 (605)
Q Consensus 504 ~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~-------~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~--~~~l~l~ 574 (605)
|..++.++...|++++|...|+++++.+|++. .+|..+|.++...|++++|+..|+++++.+|+ ++.+|..
T Consensus 79 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 158 (228)
T 4i17_A 79 YIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYS 158 (228)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHH
Confidence 55555555555555555555555555555554 33555555555555555555555555555555 4455555
Q ss_pred HHHHHHHcCC---------------------------hHHHHHHHHHHHHHCCCCCC
Q 007407 575 GAKEKWLAGD---------------------------VPATRDILQEAYAAIPNSEE 604 (605)
Q Consensus 575 ~a~~~~~~gd---------------------------~~~Ar~il~kAl~~~P~~~~ 604 (605)
+|.++...|+ +++|+..|++|++++|+++.
T Consensus 159 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~ 215 (228)
T 4i17_A 159 LGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTE 215 (228)
T ss_dssp HHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHH
Confidence 5555444444 49999999999999999864
No 56
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.72 E-value=2.8e-16 Score=156.03 Aligned_cols=231 Identities=13% Similarity=0.035 Sum_probs=170.6
Q ss_pred HHHHHHHHHHHHhC----CCcHHHHHHHH----HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh----hcHHHHHHHHH
Q 007407 349 ANKIRALRMALDEI----PDSVRLWKALV----EISSEEEARILLHRAVECCPLDVELWLALVRL----ETYGVARSVLN 416 (605)
Q Consensus 349 ~~a~~vl~kAle~~----P~~~~lw~~l~----~le~~e~A~~~l~rAl~~~P~~~~lw~aLa~l----e~~e~A~~vL~ 416 (605)
..|...|+++++.. |.+...|..++ ..+++++|+..|+++++..|.+..+|..++.+ +++++|...|+
T Consensus 22 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 101 (275)
T 1xnf_A 22 EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFD 101 (275)
T ss_dssp HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 45667888888874 34455565543 34588889999999999889888888877654 47888888999
Q ss_pred HHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 007407 417 KARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGV 495 (605)
Q Consensus 417 ~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p 495 (605)
++++..|.++.+|..++.+. ..|++++|..+|+++++..|... ....|. ..+...|+++.|...+..++...|
T Consensus 102 ~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~---~~~~~~---~~~~~~~~~~~A~~~~~~~~~~~~ 175 (275)
T 1xnf_A 102 SVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP---FRSLWL---YLAEQKLDEKQAKEVLKQHFEKSD 175 (275)
T ss_dssp HHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHH---HHHHHHHCHHHHHHHHHHHHHHSC
T ss_pred HHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh---HHHHHH---HHHHHhcCHHHHHHHHHHHHhcCC
Confidence 99988888888888888877 88888899999999888776542 112222 234556788888888888888877
Q ss_pred CchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 007407 496 DEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLT----KKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVL 571 (605)
Q Consensus 496 ~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~----~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l 571 (605)
. ....| ..+..+...++.++|...+.+++...|. +..+|..+|.++...|++++|+..|++++..+|++..
T Consensus 176 ~---~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~- 250 (275)
T 1xnf_A 176 K---EQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV- 250 (275)
T ss_dssp C---CSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH-
T ss_pred c---chHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH-
Confidence 6 33333 3566677788888888888888877664 3688888888888889999999999999888886633
Q ss_pred HHHHHHHHHHcCChHHHHHHH
Q 007407 572 WLMGAKEKWLAGDVPATRDIL 592 (605)
Q Consensus 572 ~l~~a~~~~~~gd~~~Ar~il 592 (605)
.++..+...|++++|...|
T Consensus 251 --~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 --EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --HHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHhhHHHH
Confidence 3355666778888887776
No 57
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.72 E-value=6.1e-16 Score=153.55 Aligned_cols=246 Identities=11% Similarity=-0.055 Sum_probs=179.9
Q ss_pred hhhhccHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcCchhHHH
Q 007407 261 NSELRDILKARKIVRAVTKNS----PKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLARPDEAKS 336 (605)
Q Consensus 261 ~~~~gd~~kAr~ll~~al~~~----P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~~~~Ak~ 336 (605)
....|++++|...|+++++.. |.++..|..++.++...|+++.|...++++++.+|.+..+|..++.++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~------- 87 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYL------- 87 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-------
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHH-------
Confidence 356789999999999999973 567788999999999999999999999999999999988877654432
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh----hcHHHHH
Q 007407 337 VVAKGVRQIPKSANKIRALRMALDEIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALVRL----ETYGVAR 412 (605)
Q Consensus 337 ~l~~al~~~P~s~~a~~vl~kAle~~P~~~~lw~~l~~le~~e~A~~~l~rAl~~~P~~~~lw~aLa~l----e~~e~A~ 412 (605)
...+++++|+.+|+++++..|.+..+|..++.+ +++++|.
T Consensus 88 ------------------------------------~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~ 131 (275)
T 1xnf_A 88 ------------------------------------TQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQ 131 (275)
T ss_dssp ------------------------------------HHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred ------------------------------------HHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHH
Confidence 233466777777777777777777777666543 4677777
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007407 413 SVLNKARKKLPKERAIWIAAAKLEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIE 492 (605)
Q Consensus 413 ~vL~~al~~~p~~~~iwi~~a~Le~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~ 492 (605)
..++++++..|.+...+...+.+...|++++|..++.+++...|... ..|. .+..+...+..+.|...++.++.
T Consensus 132 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~a~~~~~~~~~ 205 (275)
T 1xnf_A 132 DDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQ-----WGWN-IVEFYLGNISEQTLMERLKADAT 205 (275)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCS-----THHH-HHHHHTTSSCHHHHHHHHHHHCC
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcch-----HHHH-HHHHHHHhcCHHHHHHHHHHHhc
Confidence 77777777777776554444433355778888888888877766532 1233 44555566667778888888776
Q ss_pred hCCCc-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007407 493 IGVDE-EDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALL 558 (605)
Q Consensus 493 ~~p~~-~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~l 558 (605)
..|.. +....+|..++..+...|++++|+..|++++..+|++... ++.++...|++++|++.|
T Consensus 206 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 206 DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH---HHHHHHHHHHHHHC----
T ss_pred ccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH---HHHHHHHHHHHHhhHHHH
Confidence 65431 1246788889999999999999999999999999977443 356677778888877766
No 58
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.70 E-value=4.2e-16 Score=178.50 Aligned_cols=173 Identities=13% Similarity=0.109 Sum_probs=162.6
Q ss_pred hCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchh
Q 007407 421 KLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEED 499 (605)
Q Consensus 421 ~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~ 499 (605)
.+|+++++|.++|.+. .+|++++|+..|++|++..|. ....|..+|..+...|++++|...|++++.++|+
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-----~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~--- 75 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-----FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT--- 75 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---
Confidence 4688899999999877 999999999999999999876 5678999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007407 500 KKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEK 579 (605)
Q Consensus 500 ~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~ 579 (605)
+..+|..++..+...|++++|+..|+++++++|++..+|..+|.++...|++++|+..|++|++.+|+++.+|..+|.++
T Consensus 76 ~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l 155 (723)
T 4gyw_A 76 FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCL 155 (723)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHHHCCC
Q 007407 580 WLAGDVPATRDILQEAYAAIPN 601 (605)
Q Consensus 580 ~~~gd~~~Ar~il~kAl~~~P~ 601 (605)
...|++++|.+.+++++++.|+
T Consensus 156 ~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 156 QIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HHTTCCTTHHHHHHHHHHHHHH
T ss_pred HhcccHHHHHHHHHHHHHhChh
Confidence 9999999999999999998764
No 59
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.69 E-value=1e-15 Score=167.39 Aligned_cols=188 Identities=10% Similarity=0.013 Sum_probs=176.8
Q ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCH-HHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHH
Q 007407 407 TYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNT-SMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCV 484 (605)
Q Consensus 407 ~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~-~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~ 484 (605)
.++.+...++.+....|.+..+|+.+|.+. ..|++ ++|...|+++++..|. ....|..+|..+...|++++|.
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-----~~~a~~~lg~~~~~~g~~~~A~ 157 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-----LVEAWNQLGEVYWKKGDVTSAH 157 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHHcCCHHHHH
Confidence 466777888888888899999999999988 99999 9999999999999876 5679999999999999999999
Q ss_pred HHHHHHHHhCCCchhhHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-------
Q 007407 485 AIITNTIEIGVDEEDKKRTWVADVEECKKR---------GSIETARAIFSPACTVFLTKKNIWLKAAQLEKSY------- 548 (605)
Q Consensus 485 ~i~~~al~~~p~~~~~~~~~~~~a~~~~~~---------g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~------- 548 (605)
..|++++..+|+ ..+|..++.++... |++++|+..|+++++.+|++..+|..+|.++...
T Consensus 158 ~~~~~al~~~p~----~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~ 233 (474)
T 4abn_A 158 TCFSGALTHCKN----KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQN 233 (474)
T ss_dssp HHHHHHHTTCCC----HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhhCCC----HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccc
Confidence 999999999987 37899999999999 9999999999999999999999999999999999
Q ss_pred -CCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCC
Q 007407 549 -GCRESLIALLRKAVTYCP---QAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSE 603 (605)
Q Consensus 549 -g~~e~A~~~lekAl~~~P---~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~ 603 (605)
|++++|+..|++|+..+| +++.+|..+|.+++..|++++|...|++|++.+|++.
T Consensus 234 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 292 (474)
T 4abn_A 234 PKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWP 292 (474)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred cchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999 9999999999999999999999999999999999875
No 60
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.69 E-value=2.3e-14 Score=143.39 Aligned_cols=220 Identities=10% Similarity=-0.018 Sum_probs=191.5
Q ss_pred CCcHHHHHHHH----HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH--------hhcHHHHHHHHHHHHHhCCCCHHHHH
Q 007407 363 PDSVRLWKALV----EISSEEEARILLHRAVECCPLDVELWLALVR--------LETYGVARSVLNKARKKLPKERAIWI 430 (605)
Q Consensus 363 P~~~~lw~~l~----~le~~e~A~~~l~rAl~~~P~~~~lw~aLa~--------le~~e~A~~vL~~al~~~p~~~~iwi 430 (605)
|++...|..++ ..+++++|+.+|+++++ |.+..+|..++. ..+++.|...|+++++.. ++.+|.
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~ 78 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCH 78 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHH
Confidence 56666665554 34589999999999998 888888887764 346899999999999874 789999
Q ss_pred HHHHHH-H----cCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCchhhH
Q 007407 431 AAAKLE-A----NGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADR----AGSVVTCVAIITNTIEIGVDEEDKK 501 (605)
Q Consensus 431 ~~a~Le-~----~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~----~g~~~~A~~i~~~al~~~p~~~~~~ 501 (605)
.++.+. . .+++++|...|+++++.. ....|..++..+.. .++++.|...|++++..+ +.
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-----~~ 146 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK-------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN-----DG 146 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-----CH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC-------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC-----cH
Confidence 999877 7 899999999999999752 56789999999999 999999999999999976 45
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHH
Q 007407 502 RTWVADVEECKK----RGSIETARAIFSPACTVFLTKKNIWLKAAQLEKS----YGCRESLIALLRKAVTYCPQAEVLWL 573 (605)
Q Consensus 502 ~~~~~~a~~~~~----~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~----~g~~e~A~~~lekAl~~~P~~~~l~l 573 (605)
..+..++.++.. .+++++|+..|+++++. ++..++..+|.++.. .+++++|+..|+++++..| +..+.
T Consensus 147 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~ 222 (273)
T 1ouv_A 147 DGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCF 222 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHH
Confidence 678888999998 99999999999999987 568999999999999 9999999999999999866 88899
Q ss_pred HHHHHHHH----cCChHHHHHHHHHHHHHCCCC
Q 007407 574 MGAKEKWL----AGDVPATRDILQEAYAAIPNS 602 (605)
Q Consensus 574 ~~a~~~~~----~gd~~~Ar~il~kAl~~~P~~ 602 (605)
.+|.++.. .+++++|...|++|++..|++
T Consensus 223 ~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 223 NLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp HHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 99999998 999999999999999999864
No 61
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.68 E-value=4.6e-13 Score=146.26 Aligned_cols=302 Identities=9% Similarity=-0.025 Sum_probs=241.7
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHH----hcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcC------c--hhHHHHHH
Q 007407 272 KIVRAVTKNSPKKPLGWIQAARLEEL----ANEEAAARKLITKGCNMCPKNEDVWLEACRLAR------P--DEAKSVVA 339 (605)
Q Consensus 272 ~ll~~al~~~P~~~~~wia~Arle~~----~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~------~--~~Ak~~l~ 339 (605)
..++++. .+.++.++..++.++.. .+++++|..+++++++. .+.+.++.++.++. . +.|...|.
T Consensus 28 ~~~~~~a--~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 103 (490)
T 2xm6_A 28 EQLKQKA--ESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYK 103 (490)
T ss_dssp HHHHHHH--HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHH--HCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 4444443 46789999999999988 89999999999999986 67888887776642 2 46777777
Q ss_pred HHHhhC------------------CCc-HHHHHHHHHHHHhCCCcHHHHHHHHHh--------CCHHHHHHHHHHHHHhC
Q 007407 340 KGVRQI------------------PKS-ANKIRALRMALDEIPDSVRLWKALVEI--------SSEEEARILLHRAVECC 392 (605)
Q Consensus 340 ~al~~~------------------P~s-~~a~~vl~kAle~~P~~~~lw~~l~~l--------e~~e~A~~~l~rAl~~~ 392 (605)
++.... +.+ ..|...|+++++. .+...+..++.+ .+++.|+.+|+++++.
T Consensus 104 ~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~- 180 (490)
T 2xm6_A 104 KAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ- 180 (490)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-
T ss_pred HHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-
Confidence 776542 111 5678888888775 456656555432 2689999999999886
Q ss_pred CCCHHHHHHHHHhh--------cHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-H----cCCHHHHHHHHHHHHHHhccCc
Q 007407 393 PLDVELWLALVRLE--------TYGVARSVLNKARKKLPKERAIWIAAAKLE-A----NGNTSMVGKIIERGIRALQGEE 459 (605)
Q Consensus 393 P~~~~lw~aLa~le--------~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~----~g~~~~a~~i~~~al~~~p~~~ 459 (605)
.++..+..|+.++ +++.|...|+++.+. .++..+..++.+. . .++.++|..+|+++++..
T Consensus 181 -~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---- 253 (490)
T 2xm6_A 181 -GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---- 253 (490)
T ss_dssp -TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT----
T ss_pred -CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----
Confidence 5778887776543 578899999999875 4677888888766 4 678999999999988642
Q ss_pred ccccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHh
Q 007407 460 VVIDRDTWMKEAEVADR----AGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKR-----GSIETARAIFSPACTV 530 (605)
Q Consensus 460 ~~~~~~~wl~~A~~~e~----~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~-----g~~~~A~~i~~~al~~ 530 (605)
....+..++..+.. .+++++|...|++++..+ +...++.++.++... +++++|+..|+++++.
T Consensus 254 ---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~ 325 (490)
T 2xm6_A 254 ---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG-----NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ 325 (490)
T ss_dssp ---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT-----CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT
T ss_pred ---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc
Confidence 45677778888887 789999999999998764 566788889988887 8999999999999885
Q ss_pred cCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHC
Q 007407 531 FLTKKNIWLKAAQLEKSYG---CRESLIALLRKAVTYCPQAEVLWLMGAKEKWL----AGDVPATRDILQEAYAAI 599 (605)
Q Consensus 531 ~P~~~~~w~~la~l~~~~g---~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~----~gd~~~Ar~il~kAl~~~ 599 (605)
++..+++.+|.++...| ++++|+.+|++|++. .++..+..+|.++.. .+++++|...|.+|.+..
T Consensus 326 --~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 326 --GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp --TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred --CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 67889999999999877 788999999999987 579999999999998 899999999999999864
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.68 E-value=3e-15 Score=151.60 Aligned_cols=287 Identities=9% Similarity=-0.046 Sum_probs=195.5
Q ss_pred hhhhhhhhhhccccccccCCccccCchhHH--hhhhhhcccchhhhccHHHHHHHHHHHHHh------CCCChHHHHHHH
Q 007407 221 EGRGKILTLKLDGISDSVTGLTVFDPSGYL--TRMNDLKITTNSELRDILKARKIVRAVTKN------SPKKPLGWIQAA 292 (605)
Q Consensus 221 ~~R~~~l~~kld~~~~~~~~~~~~dp~~yl--~~L~~~~~~~~~~~gd~~kAr~ll~~al~~------~P~~~~~wia~A 292 (605)
.+...+...+++.+...+......+|.... ..+....+..+...|++.+|..++++++.. .|..+.+|..++
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 345556666777777655555555665421 122223344567899999999999999887 555677889999
Q ss_pred HHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcCchhHHHHHHHHHhhCCCcHHHHHHHHHHHHhCCCcHHHHHHH
Q 007407 293 RLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLARPDEAKSVVAKGVRQIPKSANKIRALRMALDEIPDSVRLWKAL 372 (605)
Q Consensus 293 rle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~~~~Ak~~l~~al~~~P~s~~a~~vl~kAle~~P~~~~lw~~l 372 (605)
.++...|+++.|...++++++..|...+... .+... ..+-..+
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---------~~~~~----------------------------~~l~~~~ 133 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVG---------EARAL----------------------------YNLGNVY 133 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH---------HHHHH----------------------------HHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchH---------HHHHH----------------------------HHHHHHH
Confidence 9999999999999999999887653211100 00000 0000111
Q ss_pred HHhCC-------------HHHHHHHHHHHHHhCCCCHHHHHHHHHhhcHHHHHHHHHHHHHhC------CCCHHHHHHHH
Q 007407 373 VEISS-------------EEEARILLHRAVECCPLDVELWLALVRLETYGVARSVLNKARKKL------PKERAIWIAAA 433 (605)
Q Consensus 373 ~~le~-------------~e~A~~~l~rAl~~~P~~~~lw~aLa~le~~e~A~~vL~~al~~~------p~~~~iwi~~a 433 (605)
...++ .++|... ++.|...+++++... +....++..++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~a~~~-----------------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 190 (338)
T 3ro2_A 134 HAKGKSFGCPGPQDTGEFPEDVRNA-----------------------LQAAVDLYEENLSLVTALGDRAAQGRAFGNLG 190 (338)
T ss_dssp HHHHHTSSSSSCC----CCHHHHHH-----------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHcCcccccchhhhhhhhhhhHHHH-----------------------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 22222 1122222 233333333333221 11234677778
Q ss_pred HHH-HcCCHHHHHHHHHHHHHHhccCcc-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---hhhHHHHHHHH
Q 007407 434 KLE-ANGNTSMVGKIIERGIRALQGEEV-VIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDE---EDKKRTWVADV 508 (605)
Q Consensus 434 ~Le-~~g~~~~a~~i~~~al~~~p~~~~-~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~---~~~~~~~~~~a 508 (605)
.+. ..|++++|..++++++...+..+. ......|...+..+...|+++.|...+++++...+.. .....++...+
T Consensus 191 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 270 (338)
T 3ro2_A 191 NTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLG 270 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Confidence 777 889999999999999988765432 1234578888999999999999999999998874431 12366788899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 007407 509 EECKKRGSIETARAIFSPACTVFLTK------KNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQ 567 (605)
Q Consensus 509 ~~~~~~g~~~~A~~i~~~al~~~P~~------~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~ 567 (605)
..+...|++++|...|++++...|.. ..+|..+|.++...|++++|...|++++...+.
T Consensus 271 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 271 NTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 99999999999999999999886543 568899999999999999999999999998764
No 63
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.67 E-value=3e-15 Score=158.25 Aligned_cols=285 Identities=7% Similarity=-0.074 Sum_probs=199.8
Q ss_pred hhhhhhhhhhhccccccccCCccccCchhHH--hhhhhhcccchhhhccHHHHHHHHHHHHHh------CCCChHHHHHH
Q 007407 220 GEGRGKILTLKLDGISDSVTGLTVFDPSGYL--TRMNDLKITTNSELRDILKARKIVRAVTKN------SPKKPLGWIQA 291 (605)
Q Consensus 220 ~~~R~~~l~~kld~~~~~~~~~~~~dp~~yl--~~L~~~~~~~~~~~gd~~kAr~ll~~al~~------~P~~~~~wia~ 291 (605)
..+.......+++.+...+......+|.... ..+....+..+...|++++|..+|+++++. .|....+|..+
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 3444555666777777655555556666321 122223344567899999999999999988 67778899999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcCchhHHHHHHHHHhhCCCcHHHHHHHHHHHHhCCCcHHHHHH
Q 007407 292 ARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLARPDEAKSVVAKGVRQIPKSANKIRALRMALDEIPDSVRLWKA 371 (605)
Q Consensus 292 Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~~~~Ak~~l~~al~~~P~s~~a~~vl~kAle~~P~~~~lw~~ 371 (605)
+.++...|+++.|...++++++..+.. ... |.....|..
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~----------~~~-------------------------------~~~~~~~~~ 171 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQL----------GDR-------------------------------LSEGRALYN 171 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHH----------TCH-------------------------------HHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHh----------hch-------------------------------HHHHHHHHH
Confidence 999999999999999999998864211 000 000111111
Q ss_pred ----HHHhCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHhhcHHHHHHHHHHHHHhC------CCCHHHHHH
Q 007407 372 ----LVEISS----------EEEARILLHRAVECCPLDVELWLALVRLETYGVARSVLNKARKKL------PKERAIWIA 431 (605)
Q Consensus 372 ----l~~le~----------~e~A~~~l~rAl~~~P~~~~lw~aLa~le~~e~A~~vL~~al~~~------p~~~~iwi~ 431 (605)
+...++ +++|... ++.|...+++++... +....+|..
T Consensus 172 l~~~~~~~g~~~~~~~~~~~~~~a~~~-----------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 228 (411)
T 4a1s_A 172 LGNVYHAKGKHLGQRNPGKFGDDVKEA-----------------------LTRAVEFYQENLKLMRDLGDRGAQGRACGN 228 (411)
T ss_dssp HHHHHHHHHHHHHHHSTTCCCHHHHHH-----------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHcCcccccccchhhhhhhhHH-----------------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 122223 1222222 233333333333221 122346777
Q ss_pred HHHHH-HcCCHHHHHHHHHHHHHHhccCcc-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---hhhHHHHHH
Q 007407 432 AAKLE-ANGNTSMVGKIIERGIRALQGEEV-VIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDE---EDKKRTWVA 506 (605)
Q Consensus 432 ~a~Le-~~g~~~~a~~i~~~al~~~p~~~~-~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~---~~~~~~~~~ 506 (605)
++.+. ..|++++|..+|++++...+..+. ......|...+..+...|++++|...+++++...+.. .....+|..
T Consensus 229 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 308 (411)
T 4a1s_A 229 LGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYS 308 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88777 899999999999999998775332 1223478888999999999999999999999875431 123677889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 007407 507 DVEECKKRGSIETARAIFSPACTVFLTK------KNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQA 568 (605)
Q Consensus 507 ~a~~~~~~g~~~~A~~i~~~al~~~P~~------~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~ 568 (605)
++.++...|++++|+.+|++++...+.. ..++..+|.++...|++++|..+|++++...+..
T Consensus 309 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 376 (411)
T 4a1s_A 309 LGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXX 376 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999886542 5689999999999999999999999999998643
No 64
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.67 E-value=4.9e-15 Score=137.05 Aligned_cols=170 Identities=11% Similarity=0.002 Sum_probs=156.7
Q ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHH
Q 007407 426 RAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTW 504 (605)
Q Consensus 426 ~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~ 504 (605)
..+|..++... ..|++++|..++++++...|. ....|...+..+...|+++.|...+++++...|. +..+|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~ 79 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAF-----DVDVALHLGIAYVKTGAVDRGTELLERSLADAPD---NVKVA 79 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHH
Confidence 45677778766 889999999999998877654 4678888999999999999999999999999887 78889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 007407 505 VADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGD 584 (605)
Q Consensus 505 ~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd 584 (605)
...+..+...|++++|..+|++++..+|.+..+|..+|.++...|++++|..+|++++..+|.++.+|..+|.++...|+
T Consensus 80 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 159 (186)
T 3as5_A 80 TVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGR 159 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHCCCCC
Q 007407 585 VPATRDILQEAYAAIPNSE 603 (605)
Q Consensus 585 ~~~Ar~il~kAl~~~P~~~ 603 (605)
+++|..++.++++.+|++.
T Consensus 160 ~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 160 HEEALPHFKKANELDEGAS 178 (186)
T ss_dssp HHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHcCCCch
Confidence 9999999999999999875
No 65
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.66 E-value=6.5e-15 Score=146.68 Aligned_cols=182 Identities=9% Similarity=-0.032 Sum_probs=149.2
Q ss_pred HhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch
Q 007407 420 KKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEE 498 (605)
Q Consensus 420 ~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~ 498 (605)
...|.++..++..|... ..|++++|...|++++...|.+. .....|...|..+...|+++.|...|++++...|+++
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~ 86 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHE--WAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDP 86 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCST--THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCc--chHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCc
Confidence 34567778888888655 88888888888888888776532 2356788888888888888888888888888887655
Q ss_pred hhHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhcCCCHHHH-----------------HHHHHHHHHcCCHHH
Q 007407 499 DKKRTWVADVEECKK--------RGSIETARAIFSPACTVFLTKKNIW-----------------LKAAQLEKSYGCRES 553 (605)
Q Consensus 499 ~~~~~~~~~a~~~~~--------~g~~~~A~~i~~~al~~~P~~~~~w-----------------~~la~l~~~~g~~e~ 553 (605)
....+|+..+..+.. .|++++|+..|+++++.+|++..++ +.+|.++...|++++
T Consensus 87 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 166 (261)
T 3qky_A 87 RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEA 166 (261)
T ss_dssp THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence 567778888888888 8888888888888888888876666 778999999999999
Q ss_pred HHHHHHHHHHhCCCC---HHHHHHHHHHHHHc----------CChHHHHHHHHHHHHHCCCCC
Q 007407 554 LIALLRKAVTYCPQA---EVLWLMGAKEKWLA----------GDVPATRDILQEAYAAIPNSE 603 (605)
Q Consensus 554 A~~~lekAl~~~P~~---~~l~l~~a~~~~~~----------gd~~~Ar~il~kAl~~~P~~~ 603 (605)
|+..|++++..+|++ +.+|+.+|.++... |++++|...|.++++..|+++
T Consensus 167 A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 167 AAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 999999999999984 67889999988866 889999999999999999986
No 66
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.65 E-value=1.9e-13 Score=136.66 Aligned_cols=235 Identities=11% Similarity=0.040 Sum_probs=188.1
Q ss_pred CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcCchhHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 007407 281 SPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLARPDEAKSVVAKGVRQIPKSANKIRALRMALD 360 (605)
Q Consensus 281 ~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~~~~Ak~~l~~al~~~P~s~~a~~vl~kAle 360 (605)
+|.++.+++.++.++...|++++|...++++++ |.+..+|+.++.++.. ..
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~---------g~------------------ 52 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQ---------GQ------------------ 52 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHH---------TS------------------
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHc---------CC------------------
Confidence 588899999999999999999999999999998 6677666655433210 00
Q ss_pred hCCCcHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH--------hhcHHHHHHHHHHHHHhCCCCHHHHHHH
Q 007407 361 EIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALVR--------LETYGVARSVLNKARKKLPKERAIWIAA 432 (605)
Q Consensus 361 ~~P~~~~lw~~l~~le~~e~A~~~l~rAl~~~P~~~~lw~aLa~--------le~~e~A~~vL~~al~~~p~~~~iwi~~ 432 (605)
...+++++|+.+|+++++.. +..++..++. ..+++.|...|+++++. .++.++..+
T Consensus 53 ------------~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l 116 (273)
T 1ouv_A 53 ------------GVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASL 116 (273)
T ss_dssp ------------SSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred ------------CcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHH
Confidence 00336677777777777764 5666665553 34578899999999886 478889999
Q ss_pred HHHH-H----cCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCchhhHHH
Q 007407 433 AKLE-A----NGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADR----AGSVVTCVAIITNTIEIGVDEEDKKRT 503 (605)
Q Consensus 433 a~Le-~----~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~----~g~~~~A~~i~~~al~~~p~~~~~~~~ 503 (605)
+.+. . .+++++|...|+++++.. ....+...+..+.. .+++++|...|++++..+ +...
T Consensus 117 g~~~~~~~~~~~~~~~A~~~~~~a~~~~-------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-----~~~a 184 (273)
T 1ouv_A 117 GGIYHDGKVVTRDFKKAVEYFTKACDLN-------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK-----DSPG 184 (273)
T ss_dssp HHHHHHCSSSCCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHH
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHhcC-------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-----CHHH
Confidence 9877 7 889999999999999853 35678888888888 889999999999999874 4677
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 007407 504 WVADVEECKK----RGSIETARAIFSPACTVFLTKKNIWLKAAQLEKS----YGCRESLIALLRKAVTYCPQAEVLWLM 574 (605)
Q Consensus 504 ~~~~a~~~~~----~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~----~g~~e~A~~~lekAl~~~P~~~~l~l~ 574 (605)
+..++.++.. .+++++|+..|+++++..| ..++..++.++.. .+++++|+..|++|++..|.+...++.
T Consensus 185 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~ 261 (273)
T 1ouv_A 185 CFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDILK 261 (273)
T ss_dssp HHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8889999999 9999999999999999866 8899999999999 999999999999999999876666554
No 67
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.64 E-value=2.1e-14 Score=139.73 Aligned_cols=197 Identities=14% Similarity=0.093 Sum_probs=116.4
Q ss_pred hCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH----hhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHH
Q 007407 375 ISSEEEARILLHRAVECCP-LDVELWLALVR----LETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKII 448 (605)
Q Consensus 375 le~~e~A~~~l~rAl~~~P-~~~~lw~aLa~----le~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~ 448 (605)
.+++++|+..|+++++..| .+..+|..++. ++++++|...|+++++..|.+..+|..+|.+. ..|++++|...|
T Consensus 20 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 99 (228)
T 4i17_A 20 AKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATL 99 (228)
T ss_dssp TTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHH
Confidence 3466666666666666666 55555544432 23566666666666666666666666666555 666666666666
Q ss_pred HHHHHHhccCccc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007407 449 ERGIRALQGEEVV--IDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSP 526 (605)
Q Consensus 449 ~~al~~~p~~~~~--~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~ 526 (605)
+++++..|.+... .-...|...+..+...|+++.|...|++++..+|++ -+..+|..++.++... +..++.+
T Consensus 100 ~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~l~~~~~~~-----~~~~~~~ 173 (228)
T 4i17_A 100 TEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKK-WKTDALYSLGVLFYNN-----GADVLRK 173 (228)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHH-HHHHHHHHHHHHHHHH-----HHHHHHH
T ss_pred HHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCc-ccHHHHHHHHHHHHHH-----HHHHHHH
Confidence 6666665543110 011345556666666666666666666666654430 0345555555555432 3344555
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007407 527 ACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEK 579 (605)
Q Consensus 527 al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~ 579 (605)
+....+.....+. +......+.+++|+..|++|++.+|+++.++.+++.+.
T Consensus 174 a~~~~~~~~~~~~--~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 174 ATPLASSNKEKYA--SEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HGGGTTTCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHhcccCCHHHHH--HHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 5555555433332 22333445569999999999999999999988887764
No 68
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.62 E-value=1.8e-14 Score=145.08 Aligned_cols=240 Identities=18% Similarity=0.126 Sum_probs=166.7
Q ss_pred CCCcHHHHHHHHH----hCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHh----hcHHHHHHHHHHHHHhC---
Q 007407 362 IPDSVRLWKALVE----ISSEEEARILLHRAVEC--------CPLDVELWLALVRL----ETYGVARSVLNKARKKL--- 422 (605)
Q Consensus 362 ~P~~~~lw~~l~~----le~~e~A~~~l~rAl~~--------~P~~~~lw~aLa~l----e~~e~A~~vL~~al~~~--- 422 (605)
.|.....|..++. .+++++|+.+|+++++. .|....+|..++.+ +++++|...+++++...
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 5556666665543 35788999999998884 45555666666543 47888888888888774
Q ss_pred -----CCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccC---cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007407 423 -----PKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGE---EVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEI 493 (605)
Q Consensus 423 -----p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~---~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~ 493 (605)
|....+|..++.+. ..|++++|..+|++++...... ..+.....|...|..+...|+++.|...+++++..
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33456677778777 8888888888888888876321 11335567788888888888888888888888886
Q ss_pred -----CCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC---------CCHHHHHHHHHH------HHHcCCHHH
Q 007407 494 -----GVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFL---------TKKNIWLKAAQL------EKSYGCRES 553 (605)
Q Consensus 494 -----~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P---------~~~~~w~~la~l------~~~~g~~e~ 553 (605)
++..+....+|..++.++...|++++|..+|+++++..| ....+|..+..+ ....+.+.+
T Consensus 183 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (311)
T 3nf1_A 183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGE 262 (311)
T ss_dssp HHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 122233667788888888888888888888888887543 233334443333 334455566
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCC
Q 007407 554 LIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPN 601 (605)
Q Consensus 554 A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~ 601 (605)
+...+++++...|....+|..+|.++...|++++|..+|++|+++.|+
T Consensus 263 a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 263 YGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 777888888888888999999999999999999999999999999886
No 69
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.59 E-value=1.6e-13 Score=141.07 Aligned_cols=216 Identities=11% Similarity=0.065 Sum_probs=179.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHH----HHHhh--cHHHHHHHHHHHHHhCCCCHHHHHHHHH-H----HHc---CCHHH
Q 007407 378 EEEARILLHRAVECCPLDVELWLA----LVRLE--TYGVARSVLNKARKKLPKERAIWIAAAK-L----EAN---GNTSM 443 (605)
Q Consensus 378 ~e~A~~~l~rAl~~~P~~~~lw~a----La~le--~~e~A~~vL~~al~~~p~~~~iwi~~a~-L----e~~---g~~~~ 443 (605)
.++|+.++.+++..+|.+..+|.. |..+. .++++...++.++..+|.+..+|...+. + ... +++.+
T Consensus 49 s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 49 SERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred CHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 367888888888888888888873 33455 7888889999999999998888888663 3 333 67888
Q ss_pred HHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCC-----
Q 007407 444 VGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVV--TCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGS----- 516 (605)
Q Consensus 444 a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~--~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~----- 516 (605)
+..+++++++..|+ +...|.-..-.....|... .+.+.+.+++..+|. +..+|.....++...+.
T Consensus 129 EL~~~~~~l~~~pk-----ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~---N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 129 EFDILEAMLSSDPK-----NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK---NNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp HHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHSSGGGCCHH
T ss_pred HHHHHHHHHHhCCC-----CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhccccchhh
Confidence 88899999988876 5778888887788888777 888999999999988 88999988888877776
Q ss_pred -HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCChHHHHHH
Q 007407 517 -IETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCR-ESLIALLRKAVTYC---PQAEVLWLMGAKEKWLAGDVPATRDI 591 (605)
Q Consensus 517 -~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~-e~A~~~lekAl~~~---P~~~~l~l~~a~~~~~~gd~~~Ar~i 591 (605)
+++++..+.+++..+|++.++|..++.++...|+. +++...+++++... |.++.++..+|.++.+.|+.++|.++
T Consensus 201 ~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 201 TIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 89999999999999999999999999999988874 44666777777665 78899999999999899999999999
Q ss_pred HHHHHH-HCCC
Q 007407 592 LQEAYA-AIPN 601 (605)
Q Consensus 592 l~kAl~-~~P~ 601 (605)
|+++.+ .+|-
T Consensus 281 ~~~l~~~~Dpi 291 (306)
T 3dra_A 281 YDLLKSKYNPI 291 (306)
T ss_dssp HHHHHHTTCGG
T ss_pred HHHHHhccChH
Confidence 999987 6874
No 70
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.59 E-value=3e-14 Score=163.23 Aligned_cols=169 Identities=15% Similarity=0.097 Sum_probs=155.4
Q ss_pred hCCCCHHHHHHHHHh----hcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHH
Q 007407 391 CCPLDVELWLALVRL----ETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRD 465 (605)
Q Consensus 391 ~~P~~~~lw~aLa~l----e~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~ 465 (605)
.+|++.++|..|+.+ +++++|...|++|++..|++..+|..+|.+. ..|++++|...|+++++..|. ...
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-----~~~ 78 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-----FAD 78 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHH
Confidence 478888888887754 5799999999999999999999999999877 999999999999999998876 578
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 007407 466 TWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLE 545 (605)
Q Consensus 466 ~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~ 545 (605)
.|..+|..+...|++++|...|++++.++|+ +..+|..++.++...|++++|+..|++|++++|++..+|..+|.++
T Consensus 79 a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~---~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l 155 (723)
T 4gyw_A 79 AYSNMGNTLKEMQDVQGALQCYTRAIQINPA---FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCL 155 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHH
Confidence 8999999999999999999999999999998 8899999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCC
Q 007407 546 KSYGCRESLIALLRKAVTYCPQ 567 (605)
Q Consensus 546 ~~~g~~e~A~~~lekAl~~~P~ 567 (605)
...|++++|.+.|+++++..|+
T Consensus 156 ~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 156 QIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HHTTCCTTHHHHHHHHHHHHHH
T ss_pred HhcccHHHHHHHHHHHHHhChh
Confidence 9999999999999999987653
No 71
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.58 E-value=1.1e-13 Score=137.78 Aligned_cols=196 Identities=10% Similarity=0.005 Sum_probs=134.3
Q ss_pred HhCCCCHHHHHHHHH----hhcHHHHHHHHHHHHHhCCCC---HHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCccc
Q 007407 390 ECCPLDVELWLALVR----LETYGVARSVLNKARKKLPKE---RAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVV 461 (605)
Q Consensus 390 ~~~P~~~~lw~aLa~----le~~e~A~~vL~~al~~~p~~---~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~ 461 (605)
+..|.+.+.++.++. .+++++|...|+++++..|.+ +.+|+.+|.+. ..|++++|...|+++++..|.+.
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~-- 86 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDP-- 86 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT--
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCc--
Confidence 344555555554443 245666666666666666666 66666666655 66666666666666666665431
Q ss_pred ccHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCchhhHHH--------------HHHHHHHHHHcCCHHH
Q 007407 462 IDRDTWMKEAEVADR--------AGSVVTCVAIITNTIEIGVDEEDKKRT--------------WVADVEECKKRGSIET 519 (605)
Q Consensus 462 ~~~~~wl~~A~~~e~--------~g~~~~A~~i~~~al~~~p~~~~~~~~--------------~~~~a~~~~~~g~~~~ 519 (605)
.....|...|..+.. .|+++.|...|++++...|+++..... ++..|.++...|++++
T Consensus 87 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 166 (261)
T 3qky_A 87 RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEA 166 (261)
T ss_dssp THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence 234456666666666 666666667777766666653222222 3788999999999999
Q ss_pred HHHHHHHHHHhcCC---CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcC
Q 007407 520 ARAIFSPACTVFLT---KKNIWLKAAQLEKSY----------GCRESLIALLRKAVTYCPQAEVL---WLMGAKEKWLAG 583 (605)
Q Consensus 520 A~~i~~~al~~~P~---~~~~w~~la~l~~~~----------g~~e~A~~~lekAl~~~P~~~~l---~l~~a~~~~~~g 583 (605)
|+..|+++++.+|+ ...+|+.+|.++... |++++|+..|++++..+|+++.+ ...++.++...+
T Consensus 167 A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~ 246 (261)
T 3qky_A 167 AAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLT 246 (261)
T ss_dssp HHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHH
Confidence 99999999999998 567999999999876 88999999999999999998543 444455554444
Q ss_pred ChHH
Q 007407 584 DVPA 587 (605)
Q Consensus 584 d~~~ 587 (605)
++++
T Consensus 247 ~~~~ 250 (261)
T 3qky_A 247 ELEG 250 (261)
T ss_dssp HHHT
T ss_pred Hhhh
Confidence 4443
No 72
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.58 E-value=1.9e-13 Score=133.47 Aligned_cols=175 Identities=10% Similarity=-0.020 Sum_probs=116.2
Q ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHH
Q 007407 428 IWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVA 506 (605)
Q Consensus 428 iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~ 506 (605)
.++..|... ..|++++|...|++++...|.+. .....|+..|..+...|+++.|...|++++...|+++.-..+|+.
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGP--YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST--THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 344444333 44445555555555544444321 122344444444444555555555555555544442222223333
Q ss_pred HHHHH------------------HHcCCHHHHHHHHHHHHHhcCCCHHHH-----------------HHHHHHHHHcCCH
Q 007407 507 DVEEC------------------KKRGSIETARAIFSPACTVFLTKKNIW-----------------LKAAQLEKSYGCR 551 (605)
Q Consensus 507 ~a~~~------------------~~~g~~~~A~~i~~~al~~~P~~~~~w-----------------~~la~l~~~~g~~ 551 (605)
.+..+ ...|++++|+..|+++++.+|++..++ +.+|.++...|++
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~ 163 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAW 163 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 33333 335678888888888888888877655 5678889999999
Q ss_pred HHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCCC
Q 007407 552 ESLIALLRKAVTYCPQAE---VLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSEE 604 (605)
Q Consensus 552 e~A~~~lekAl~~~P~~~---~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~~ 604 (605)
++|+..|+++++.+|+++ .++..+|.++.+.|++++|+..++++....|++.+
T Consensus 164 ~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 164 VAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred HHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 999999999999999986 67999999999999999999999999999998864
No 73
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.58 E-value=1.5e-14 Score=165.12 Aligned_cols=185 Identities=10% Similarity=0.003 Sum_probs=154.7
Q ss_pred hCCCCHHHHHHHH-HhhcHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcc
Q 007407 391 CCPLDVELWLALV-RLETYGVARSVLNKAR--------KKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEV 460 (605)
Q Consensus 391 ~~P~~~~lw~aLa-~le~~e~A~~vL~~al--------~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~ 460 (605)
..|.++.+++..+ ..+++++|...|++++ +..|.+..+|+.+|.+. ..|++++|...|+++++..|.
T Consensus 389 ~~p~~~~a~~~~a~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--- 465 (681)
T 2pzi_A 389 VDPTDVAASVLQATVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW--- 465 (681)
T ss_dssp CCTTSTTHHHHHHTTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC---
T ss_pred CCCCCcchHHhhcccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc---
Confidence 3567766665554 3457888999999998 88888888899888876 888999999999999988776
Q ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 007407 461 VIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLK 540 (605)
Q Consensus 461 ~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~ 540 (605)
+...|...|..+...|++++|...|++++..+|+ +..+|+.++..+...|++++ +..|+++++.+|++..+|+.
T Consensus 466 --~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~---~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~ 539 (681)
T 2pzi_A 466 --RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG---ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFG 539 (681)
T ss_dssp --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT---CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHH
T ss_pred --hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHH
Confidence 5678888888888899999999999999999888 77888888999999999999 99999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 007407 541 AAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGD 584 (605)
Q Consensus 541 la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd 584 (605)
+|.++...|++++|+..|++|++.+|++..+|+.+|.+++..++
T Consensus 540 lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 540 LARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 99999999999999999999999999888899888888876665
No 74
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.58 E-value=2.2e-15 Score=138.07 Aligned_cols=139 Identities=10% Similarity=0.018 Sum_probs=71.3
Q ss_pred HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCC
Q 007407 437 ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGS 516 (605)
Q Consensus 437 ~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~ 516 (605)
..|++++++..+++++...|. ....|+..|..+...|+++.|...|++++.++|+ +..+|..++.++...|+
T Consensus 9 ~~~~~e~ai~~~~~a~~~~p~-----~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSPRQ-----KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER---DPKAHRFLGLLYELEEN 80 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSHHH-----HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTC
T ss_pred HcChHHHHHHHHHHhcccCcc-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCc
Confidence 334455555555554443322 3344455555555555555555555555555554 45555555555555555
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 007407 517 IETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIA-LLRKAVTYCPQAEVLWLMGAKEKWLAG 583 (605)
Q Consensus 517 ~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~-~lekAl~~~P~~~~l~l~~a~~~~~~g 583 (605)
+++|+..|+++++++|+++.+|+.+|.++...|+++++.+ .+++|++.+|+++.+|...++++...|
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 5555555555555555555555555555555555443333 235555555555555555555544443
No 75
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.58 E-value=4.4e-14 Score=143.86 Aligned_cols=241 Identities=12% Similarity=0.024 Sum_probs=185.8
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHhC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHhhcHHHHHHHHHHHHHhCCC---
Q 007407 351 KIRALRMALDEIPDSVRLWKALVEIS---SEEEARILLHRAVECCPLDVELWLALVRLETYGVARSVLNKARKKLPK--- 424 (605)
Q Consensus 351 a~~vl~kAle~~P~~~~lw~~l~~le---~~e~A~~~l~rAl~~~P~~~~lw~aLa~le~~e~A~~vL~~al~~~p~--- 424 (605)
+..++++|-...+.+..+| .+.... ++++|...|.++.. .+...+++++|...|++++...+.
T Consensus 4 a~~~~~~a~k~~~~~~~~~-~~~~~~~~~~~~~A~~~~~~a~~----------~~~~~g~~~~A~~~~~~al~~~~~~~~ 72 (292)
T 1qqe_A 4 PVELLKRAEKKGVPSSGFM-KLFSGSDSYKFEEAADLCVQAAT----------IYRLRKELNLAGDSFLKAADYQKKAGN 72 (292)
T ss_dssp HHHHHHHHHHHSSCCCTHH-HHHSCCSHHHHHHHHHHHHHHHH----------HHHHTTCTHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCcCCCcc-hhcCCCCCccHHHHHHHHHHHHH----------HHHHcCCHHHHHHHHHHHHHHHHHhCC
Confidence 4566677777777665566 444432 47899999999843 344667899999999999987532
Q ss_pred ---CHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccc-cHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCch
Q 007407 425 ---ERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVI-DRDTWMKEAEVADRA-GSVVTCVAIITNTIEIGVDEE 498 (605)
Q Consensus 425 ---~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~-~~~~wl~~A~~~e~~-g~~~~A~~i~~~al~~~p~~~ 498 (605)
...+|..++.+. ..|++++|...|+++++..+..+... ....|...|..+... |+++.|...|++++.+.|...
T Consensus 73 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~ 152 (292)
T 1qqe_A 73 EDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ 152 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCC
Confidence 145788899887 99999999999999999987754321 245788899999996 999999999999999876421
Q ss_pred h---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 007407 499 D---KKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKN-------IWLKAAQLEKSYGCRESLIALLRKAVTYCPQA 568 (605)
Q Consensus 499 ~---~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~-------~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~ 568 (605)
+ ...+|...+.++...|++++|+.+|+++++..|++.. +|..+|.++...|++++|+..|++++..+|..
T Consensus 153 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 232 (292)
T 1qqe_A 153 SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNF 232 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----
T ss_pred ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 1 2457888999999999999999999999999987643 68899999999999999999999999999876
Q ss_pred HH-----HHHHHHHHHH--HcCChHHHHHHHHHHHHHCCCC
Q 007407 569 EV-----LWLMGAKEKW--LAGDVPATRDILQEAYAAIPNS 602 (605)
Q Consensus 569 ~~-----l~l~~a~~~~--~~gd~~~Ar~il~kAl~~~P~~ 602 (605)
.. ++..++..+. ..+++++|...|++++.++|.+
T Consensus 233 ~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 233 ADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp -----HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 44 2333444443 2567999999999988887754
No 76
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.58 E-value=5.2e-14 Score=143.32 Aligned_cols=209 Identities=16% Similarity=0.100 Sum_probs=171.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHh---hcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHh
Q 007407 380 EARILLHRAVECCPLDVELWLALVRL---ETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRAL 455 (605)
Q Consensus 380 ~A~~~l~rAl~~~P~~~~lw~aLa~l---e~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~ 455 (605)
+|..++.+|-++.+.+..+| .+..- .++++|...|+++ +.+. ..|++++|...|.+++...
T Consensus 3 ~a~~~~~~a~k~~~~~~~~~-~~~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~ 67 (292)
T 1qqe_A 3 DPVELLKRAEKKGVPSSGFM-KLFSGSDSYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQ 67 (292)
T ss_dssp CHHHHHHHHHHHSSCCCTHH-HHHSCCSHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCcCCCcc-hhcCCCCCccHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHH
Confidence 47889999999999865566 44443 2488899888887 3345 7899999999999999987
Q ss_pred ccCcccc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch---hhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Q 007407 456 QGEEVVI-DRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEE---DKKRTWVADVEECKKR-GSIETARAIFSPACTV 530 (605)
Q Consensus 456 p~~~~~~-~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~---~~~~~~~~~a~~~~~~-g~~~~A~~i~~~al~~ 530 (605)
+..+.+. ....|...+..+...|++++|...|++++.+.+... ....+|...+.++... |++++|+..|++++++
T Consensus 68 ~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~ 147 (292)
T 1qqe_A 68 KKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW 147 (292)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Confidence 6654322 356888999999999999999999999999865411 1245788999999996 9999999999999999
Q ss_pred cCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 007407 531 FLTK------KNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEV-------LWLMGAKEKWLAGDVPATRDILQEAYA 597 (605)
Q Consensus 531 ~P~~------~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~-------l~l~~a~~~~~~gd~~~Ar~il~kAl~ 597 (605)
+|.. ..+|..+|.++...|++++|+.+|++++..+|++.. .|+.+|.++...|++++|+..|+++++
T Consensus 148 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 148 YAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9864 568999999999999999999999999999987643 578889999999999999999999999
Q ss_pred HCCCCC
Q 007407 598 AIPNSE 603 (605)
Q Consensus 598 ~~P~~~ 603 (605)
++|+..
T Consensus 228 l~p~~~ 233 (292)
T 1qqe_A 228 EDPNFA 233 (292)
T ss_dssp C-----
T ss_pred hCCCCC
Confidence 999754
No 77
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.57 E-value=6.7e-13 Score=144.05 Aligned_cols=309 Identities=12% Similarity=0.028 Sum_probs=172.0
Q ss_pred hhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCH---HHHHHHHHHHHhhCCCCHHHHHHHHh-hcCc------
Q 007407 262 SELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEE---AAARKLITKGCNMCPKNEDVWLEACR-LARP------ 331 (605)
Q Consensus 262 ~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~---~~Ar~ll~~~l~~~P~~~~lwle~a~-L~~~------ 331 (605)
.+.|++++|..+|+++.+. .++.+++.++.++...|+. ++|..+++++++. +++.++.++. +...
T Consensus 14 ~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 14 LKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHH--TCCTGGGTCC-------------------------------CHHHHHHHHHTC--CCHH
T ss_pred HhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCCCCc
Confidence 3455555566665555443 3445555555555555555 5555555555544 3334444443 2111
Q ss_pred --hhHHHHHHHHHhhCCCc------------------HHHHHHHHHHHHhCCCcHHHHHHHHHh----C----CHHHHHH
Q 007407 332 --DEAKSVVAKGVRQIPKS------------------ANKIRALRMALDEIPDSVRLWKALVEI----S----SEEEARI 383 (605)
Q Consensus 332 --~~Ak~~l~~al~~~P~s------------------~~a~~vl~kAle~~P~~~~lw~~l~~l----e----~~e~A~~ 383 (605)
+.|...|.+++...+.. ..+...+.++.+... ...+..++.+ . ..+.|..
T Consensus 89 ~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~--~~a~~~Lg~~y~~~~~~~~~~~~a~~ 166 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY--PEAGLAQVLLYRTQGTYDQHLDDVER 166 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC--TTHHHHHHHHHHHHTCGGGGHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC--HHHHHHHHHHHHcCCCcccCHHHHHH
Confidence 23444555555432222 112333333333221 2222222221 1 3355666
Q ss_pred HHHHHHHhCCCCHHHHHHHHHh----h---cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHc-----CCHHHHHHHHHHH
Q 007407 384 LLHRAVECCPLDVELWLALVRL----E---TYGVARSVLNKARKKLPKERAIWIAAAKLEAN-----GNTSMVGKIIERG 451 (605)
Q Consensus 384 ~l~rAl~~~P~~~~lw~aLa~l----e---~~e~A~~vL~~al~~~p~~~~iwi~~a~Le~~-----g~~~~a~~i~~~a 451 (605)
++..+....|. ++..|+.+ + ++++|...|+++....|.+...++.++.+... +++++|...|+++
T Consensus 167 ~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~a 243 (452)
T 3e4b_A 167 ICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKI 243 (452)
T ss_dssp HHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHH
T ss_pred HHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHH
Confidence 66666665555 44444433 2 56778888888888888887777777766522 4677888888887
Q ss_pred HHHhccCcccccHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcC-----CHHHHHHH
Q 007407 452 IRALQGEEVVIDRDTWMKEAEV-A--DRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRG-----SIETARAI 523 (605)
Q Consensus 452 l~~~p~~~~~~~~~~wl~~A~~-~--e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g-----~~~~A~~i 523 (605)
. |. +...+..++.. + ...+++++|...|++++..+ +...++.++.++. .| ++++|+..
T Consensus 244 a---~g-----~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g-----~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~ 309 (452)
T 3e4b_A 244 A---PG-----YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD-----QPRAELLLGKLYY-EGKWVPADAKAAEAH 309 (452)
T ss_dssp G---GG-----STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHH-HCSSSCCCHHHHHHH
T ss_pred c---CC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHH-cCCCCCCCHHHHHHH
Confidence 6 33 34566666665 3 34677888888888887654 4566777777776 44 78888888
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHH
Q 007407 524 FSPACTVFLTKKNIWLKAAQLEKS----YGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWL----AGDVPATRDILQEA 595 (605)
Q Consensus 524 ~~~al~~~P~~~~~w~~la~l~~~----~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~----~gd~~~Ar~il~kA 595 (605)
|++++ |+++.+++.+|.++.. ..++++|..+|++|.+. .++.....+|.++.. ..|+.+|...|.+|
T Consensus 310 ~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 384 (452)
T 3e4b_A 310 FEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLA 384 (452)
T ss_dssp HHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHH
T ss_pred HHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 88887 7888888888877776 23788888888888764 456666777777764 34788888888887
Q ss_pred HHHC
Q 007407 596 YAAI 599 (605)
Q Consensus 596 l~~~ 599 (605)
.+..
T Consensus 385 ~~~g 388 (452)
T 3e4b_A 385 KAQD 388 (452)
T ss_dssp HTTC
T ss_pred HHCC
Confidence 7654
No 78
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.55 E-value=2e-14 Score=131.65 Aligned_cols=130 Identities=12% Similarity=0.003 Sum_probs=116.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCH
Q 007407 472 EVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCR 551 (605)
Q Consensus 472 ~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~ 551 (605)
..+...|.++.|.+.++.++...|+ +...|+.+|.++...|++++|+..|+++++++|++..+|..+|.++...|++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~p~---~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSPRQ---KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSHHH---HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcChHHHHHHHHHHhcccCcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 3444556788999999999887766 7888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH-HHHHHHHHCCCCCC
Q 007407 552 ESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRD-ILQEAYAAIPNSEE 604 (605)
Q Consensus 552 e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~-il~kAl~~~P~~~~ 604 (605)
++|+..|+++++.+|+++.+|..+|.++.+.|++++|.. .+++|++++|+++.
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~ 135 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPA 135 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHH
Confidence 999999999999999999999999999999999876655 56999999999864
No 79
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.55 E-value=5.2e-13 Score=140.59 Aligned_cols=228 Identities=8% Similarity=-0.041 Sum_probs=180.2
Q ss_pred HHhCCHHHHHHHHHHHHHh---CCCC---HHHHHHHHH----hhcHHHHHHHHHHHHHhCCCC-------HHHHHHHHHH
Q 007407 373 VEISSEEEARILLHRAVEC---CPLD---VELWLALVR----LETYGVARSVLNKARKKLPKE-------RAIWIAAAKL 435 (605)
Q Consensus 373 ~~le~~e~A~~~l~rAl~~---~P~~---~~lw~aLa~----le~~e~A~~vL~~al~~~p~~-------~~iwi~~a~L 435 (605)
...+++++|+..|++|++. .|+. ..++..++. +++++.|...+++|++..+.. ..++..+|.+
T Consensus 114 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 193 (383)
T 3ulq_A 114 LDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATN 193 (383)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHH
Confidence 3446899999999999987 4443 345555554 357999999999999986543 3467778887
Q ss_pred H-HcCCHHHHHHHHHHHHHHhccCcc-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--Cc-hhhHHHHHHHHHH
Q 007407 436 E-ANGNTSMVGKIIERGIRALQGEEV-VIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGV--DE-EDKKRTWVADVEE 510 (605)
Q Consensus 436 e-~~g~~~~a~~i~~~al~~~p~~~~-~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p--~~-~~~~~~~~~~a~~ 510 (605)
. ..|++++|...|++++...+..+. ......|...|..+...|+++.|...+++++.+.. .+ +....++..+|..
T Consensus 194 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 273 (383)
T 3ulq_A 194 FLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQI 273 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Confidence 7 999999999999999998876542 22345788899999999999999999999998411 11 2367889999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhc-----CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 007407 511 CKKRGSIETARAIFSPACTVF-----LTKKNIWLKAAQLEKSYGC---RESLIALLRKAVTYCPQAEVLWLMGAKEKWLA 582 (605)
Q Consensus 511 ~~~~g~~~~A~~i~~~al~~~-----P~~~~~w~~la~l~~~~g~---~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~ 582 (605)
+...|++++|...|+++++.. |.....+..++.++...|+ +++|+.+++++ ...|....++..+|.++...
T Consensus 274 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~ 352 (383)
T 3ulq_A 274 HYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHER 352 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHC
Confidence 999999999999999999884 3344446678999999999 77777777766 22234466788999999999
Q ss_pred CChHHHHHHHHHHHHHCCC
Q 007407 583 GDVPATRDILQEAYAAIPN 601 (605)
Q Consensus 583 gd~~~Ar~il~kAl~~~P~ 601 (605)
|++++|...|.+|+++...
T Consensus 353 g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 353 KNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp TCHHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 9999999999999987643
No 80
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.54 E-value=1e-13 Score=133.90 Aligned_cols=129 Identities=10% Similarity=0.000 Sum_probs=107.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 007407 470 EAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYG 549 (605)
Q Consensus 470 ~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g 549 (605)
.|..+...|+++.|...|++++..+|+ +..+|+.++.++...|++++|+..|+++++.+|++..+|+.+|.++...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPN---NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 888889999999999999999999988 88899999999999999999999999999999999999999999987765
Q ss_pred C--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCC
Q 007407 550 C--RESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNS 602 (605)
Q Consensus 550 ~--~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~ 602 (605)
. ...+...|++++...| ....|...|..+...|++++|...|++|++++|++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 137 EQEKKKLETDYKKLSSPTK-MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHC---CCCH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 4 4557777877764322 12356677888888899999999999999999975
No 81
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.54 E-value=1.1e-14 Score=134.07 Aligned_cols=115 Identities=10% Similarity=0.020 Sum_probs=106.6
Q ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 007407 486 IITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYC 565 (605)
Q Consensus 486 i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~ 565 (605)
.+++++.++|+ +...|+..+..+...|++++|+.+|++++..+|+++.+|+.+|.++...|++++|+..|++|+..+
T Consensus 24 ~l~~al~l~p~---~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~ 100 (151)
T 3gyz_A 24 TLKDINAIPDD---MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100 (151)
T ss_dssp CTGGGCCSCHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CHHHHhCCCHH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence 45556666665 889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCC
Q 007407 566 PQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSE 603 (605)
Q Consensus 566 P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~ 603 (605)
|+++.+|+.+|.++...|++++|...|++|++..|+++
T Consensus 101 P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999999999999753
No 82
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.53 E-value=6.6e-12 Score=131.19 Aligned_cols=293 Identities=11% Similarity=0.017 Sum_probs=142.1
Q ss_pred hhhhccHHHHHHHHHHHHHhCCCChH-----HHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcCchhHH
Q 007407 261 NSELRDILKARKIVRAVTKNSPKKPL-----GWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLARPDEAK 335 (605)
Q Consensus 261 ~~~~gd~~kAr~ll~~al~~~P~~~~-----~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~~~~Ak 335 (605)
....|++..|..++++++...|.+.. ++..++.++...|+++.|...+++++...|...+.+...
T Consensus 24 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---------- 93 (373)
T 1hz4_A 24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL---------- 93 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH----------
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH----------
Confidence 34556666666666666665554432 233445555556666666666666555543221110000
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHhCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHH---
Q 007407 336 SVVAKGVRQIPKSANKIRALRMALDEIPDSVRLWKALVEISSEEEARILLHRAVECCP--------LDVELWLALVR--- 404 (605)
Q Consensus 336 ~~l~~al~~~P~s~~a~~vl~kAle~~P~~~~lw~~l~~le~~e~A~~~l~rAl~~~P--------~~~~lw~aLa~--- 404 (605)
.+ ...+-..+...+++++|+.+|+++++..+ ....++..++.
T Consensus 94 ----~~-----------------------~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 146 (373)
T 1hz4_A 94 ----WS-----------------------LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLW 146 (373)
T ss_dssp ----HH-----------------------HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHH
T ss_pred ----HH-----------------------HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHH
Confidence 00 01112223344566777777777766542 11222222222
Q ss_pred -hhcHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHH-----HHH
Q 007407 405 -LETYGVARSVLNKARKKLPKE-----RAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMK-----EAE 472 (605)
Q Consensus 405 -le~~e~A~~vL~~al~~~p~~-----~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~-----~A~ 472 (605)
.+++++|...+++++...+.. ...+..++.+. ..|++++|..++++++...+..+.+ ..|.. .+.
T Consensus 147 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~---~~~~~~~~~~~~~ 223 (373)
T 1hz4_A 147 AWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYH---SDWISNANKVRVI 223 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCC---HHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcc---hhHHHHHHHHHHH
Confidence 235666666666666655431 23445555555 5666666666666666554433221 12221 223
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCch-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC------CHHHHHHHHHHH
Q 007407 473 VADRAGSVVTCVAIITNTIEIGVDEE-DKKRTWVADVEECKKRGSIETARAIFSPACTVFLT------KKNIWLKAAQLE 545 (605)
Q Consensus 473 ~~e~~g~~~~A~~i~~~al~~~p~~~-~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~------~~~~w~~la~l~ 545 (605)
.+...|+++.|...++.++...+... .....+...+..+...|++++|...+++++...+. ...++..++.++
T Consensus 224 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~ 303 (373)
T 1hz4_A 224 YWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLY 303 (373)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHH
Confidence 34455666666666666555443210 01223445555566666666666666666554322 113455556666
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCC
Q 007407 546 KSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIP 600 (605)
Q Consensus 546 ~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P 600 (605)
...|++++|...|++++...+.. .+...+...| +....+|.+.+...|
T Consensus 304 ~~~g~~~~A~~~l~~al~~~~~~-----g~~~~~~~~g--~~~~~ll~~~~~~~~ 351 (373)
T 1hz4_A 304 WQAGRKSDAQRVLLDALKLANRT-----GFISHFVIEG--EAMAQQLRQLIQLNT 351 (373)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHH-----CCCHHHHTTH--HHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHHHhccc-----cHHHHHHHcc--HHHHHHHHHHHhCCC
Confidence 66666666666666666554321 1112222222 455555555555555
No 83
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.53 E-value=5.4e-13 Score=123.14 Aligned_cols=157 Identities=11% Similarity=0.015 Sum_probs=143.8
Q ss_pred hhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHH
Q 007407 405 LETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTC 483 (605)
Q Consensus 405 le~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A 483 (605)
.++++.|...++++++..|.+..+|..++.+. ..|++++|..+++++++..|. ....|...+..+...|+++.|
T Consensus 21 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~a~~~~~~~~~~~A 95 (186)
T 3as5_A 21 AGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-----NVKVATVLGLTYVQVQKYDLA 95 (186)
T ss_dssp HTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHTCHHHH
T ss_pred hcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHhcCHHHH
Confidence 45788999999999999999999999999877 899999999999999988665 467888999999999999999
Q ss_pred HHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007407 484 VAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVT 563 (605)
Q Consensus 484 ~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~ 563 (605)
...+++++...|. +..+|...+..+...|++++|..+|+++++..|.+..+|..+|.++...|++++|...|++++.
T Consensus 96 ~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 96 VPLLIKVAEANPI---NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcH---hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999887 7888999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCH
Q 007407 564 YCPQAE 569 (605)
Q Consensus 564 ~~P~~~ 569 (605)
.+|++.
T Consensus 173 ~~~~~~ 178 (186)
T 3as5_A 173 LDEGAS 178 (186)
T ss_dssp HHHCCC
T ss_pred cCCCch
Confidence 988764
No 84
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.53 E-value=7.7e-14 Score=124.02 Aligned_cols=105 Identities=11% Similarity=-0.007 Sum_probs=94.7
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007407 500 KKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEK 579 (605)
Q Consensus 500 ~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~ 579 (605)
....|...+..+...|++++|+..|+++++.+|++..+|..+|.++...|++++|+..|++|++.+|+++.+|+.+|.++
T Consensus 12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 77888888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHHHCCCCCC
Q 007407 580 WLAGDVPATRDILQEAYAAIPNSEE 604 (605)
Q Consensus 580 ~~~gd~~~Ar~il~kAl~~~P~~~~ 604 (605)
...|++++|...|++|++++|++.+
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~ 116 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEE 116 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHH
Confidence 8999999999999999999998753
No 85
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.52 E-value=1.1e-12 Score=113.98 Aligned_cols=134 Identities=16% Similarity=0.251 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 007407 466 TWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLE 545 (605)
Q Consensus 466 ~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~ 545 (605)
.|...+..+...|+++.|..+++.++..+|. +...|...+..+...|++++|..+|++++...|....+|..++.++
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR---SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc---chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence 5777888888999999999999999999887 7788999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCC
Q 007407 546 KSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNS 602 (605)
Q Consensus 546 ~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~ 602 (605)
...|++++|..+|++++...|.+..+|..+|.++...|++++|...|.+++..+|++
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 999999999999999999999999999999999999999999999999999999975
No 86
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.52 E-value=1.5e-11 Score=127.33 Aligned_cols=215 Identities=15% Similarity=0.058 Sum_probs=176.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHH----HHHhhc----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcC--CH
Q 007407 379 EEARILLHRAVECCPLDVELWLA----LVRLET----------YGVARSVLNKARKKLPKERAIWIAAAKLE-ANG--NT 441 (605)
Q Consensus 379 e~A~~~l~rAl~~~P~~~~lw~a----La~le~----------~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g--~~ 441 (605)
++|+.++.+++..+|.+..+|.. |..+.. ++++...++.++..+|.+..+|...+-+- ..| ..
T Consensus 47 ~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~ 126 (331)
T 3dss_A 47 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 126 (331)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCH
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccH
Confidence 68899999999999999999873 222322 67889999999999999999999988654 666 47
Q ss_pred HHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHc------
Q 007407 442 SMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGS-VVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKR------ 514 (605)
Q Consensus 442 ~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~-~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~------ 514 (605)
..+..++.++++..|. +...|.-..-.....|. .+.+.+.+..+|..+|. +..+|...+.++...
T Consensus 127 ~~EL~~~~k~l~~dpr-----Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~---N~SAW~~R~~ll~~l~~~~~~ 198 (331)
T 3dss_A 127 ARELELCARFLEADER-----NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS---NYSSWHYRSCLLPQLHPQPDS 198 (331)
T ss_dssp HHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC---CHHHHHHHHHHHHHHSCCC--
T ss_pred HHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHhhhcccc
Confidence 8999999999998877 57789888888888886 68999999999999998 899999988877765
Q ss_pred --------CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 007407 515 --------GSIETARAIFSPACTVFLTKKNIWLKAAQLEKSY-----------GCRESLIALLRKAVTYCPQAEVLWLMG 575 (605)
Q Consensus 515 --------g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~-----------g~~e~A~~~lekAl~~~P~~~~l~l~~ 575 (605)
+.++++...+.+++..+|++.++|+.+..++... +.++++++.++++++..|++.-.++.+
T Consensus 199 ~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~ 278 (331)
T 3dss_A 199 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTI 278 (331)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHH
Confidence 4588999999999999999999998877776655 457899999999999999984333333
Q ss_pred HHHHH---HcCChHHHHHHHHHHHHHCCC
Q 007407 576 AKEKW---LAGDVPATRDILQEAYAAIPN 601 (605)
Q Consensus 576 a~~~~---~~gd~~~Ar~il~kAl~~~P~ 601 (605)
+.+.. ..|..++++..|.+..+++|-
T Consensus 279 ~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~ 307 (331)
T 3dss_A 279 ILLMRALDPLLYEKETLQYFSTLKAVDPM 307 (331)
T ss_dssp HHHHHHHCTTTTHHHHHHHHHHHHHHCGG
T ss_pred HHHHHhhcccccHHHHHHHHHHHHHhCcc
Confidence 33322 267888999999999999994
No 87
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.52 E-value=4.5e-12 Score=130.26 Aligned_cols=235 Identities=9% Similarity=0.040 Sum_probs=196.9
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHhCCCcHHHHHH----HHHhC--CHHHHHHHHHHHHHhCCCCHHHHHH----H--
Q 007407 335 KSVVAKGVRQIPKSANKIRALRMALDEIPDSVRLWKA----LVEIS--SEEEARILLHRAVECCPLDVELWLA----L-- 402 (605)
Q Consensus 335 k~~l~~al~~~P~s~~a~~vl~kAle~~P~~~~lw~~----l~~le--~~e~A~~~l~rAl~~~P~~~~lw~a----L-- 402 (605)
...+...++....|..+...+.++|..+|++..+|.. +..++ .+++++..+..++..+|++..+|.. |
T Consensus 36 ~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~ 115 (306)
T 3dra_A 36 MGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQ 115 (306)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHH
Confidence 3444444555556677888899999999999999963 34566 8899999999999999999999973 2
Q ss_pred --HHh---hcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHH--HHHHHHHHHHHHhccCcccccHHHHHHHHHHH
Q 007407 403 --VRL---ETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTS--MVGKIIERGIRALQGEEVVIDRDTWMKEAEVA 474 (605)
Q Consensus 403 --a~l---e~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~--~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~ 474 (605)
..+ ..++++...++++++.+|.+..+|...+-+- ..|..+ .....++++++..|. +...|...+...
T Consensus 116 ~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-----N~sAW~~R~~ll 190 (306)
T 3dra_A 116 IMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-----NNSAWSHRFFLL 190 (306)
T ss_dssp HHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-----CHHHHHHHHHHH
T ss_pred HHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-----CHHHHHHHHHHH
Confidence 234 4678999999999999999999999988644 778777 899999999998876 578898888777
Q ss_pred HHcCC------HHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhc---CCCHHHHHHHHHH
Q 007407 475 DRAGS------VVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIE-TARAIFSPACTVF---LTKKNIWLKAAQL 544 (605)
Q Consensus 475 e~~g~------~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~-~A~~i~~~al~~~---P~~~~~w~~la~l 544 (605)
...|. ++++...+..+|..+|. +.++|.....++...|+.. .+...+.+++... |.+..+|..++.+
T Consensus 191 ~~l~~~~~~~~~~eEl~~~~~aI~~~p~---n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~ 267 (306)
T 3dra_A 191 FSKKHLATDNTIDEELNYVKDKIVKCPQ---NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKI 267 (306)
T ss_dssp HSSGGGCCHHHHHHHHHHHHHHHHHCSS---CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHH
T ss_pred HhccccchhhhHHHHHHHHHHHHHhCCC---CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHH
Confidence 77665 78899999999999999 8999999998888888744 4666777777766 8899999999999
Q ss_pred HHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHH
Q 007407 545 EKSYGCRESLIALLRKAVT-YCPQAEVLWLMGAK 577 (605)
Q Consensus 545 ~~~~g~~e~A~~~lekAl~-~~P~~~~l~l~~a~ 577 (605)
+.+.|+.++|+++|+.+.. .+|-....|...+.
T Consensus 268 ~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 268 YTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHccCCHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence 9999999999999999997 79999999987654
No 88
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.51 E-value=7.9e-13 Score=134.45 Aligned_cols=169 Identities=11% Similarity=-0.040 Sum_probs=133.6
Q ss_pred CCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhh
Q 007407 422 LPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDK 500 (605)
Q Consensus 422 ~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~ 500 (605)
.|.+.+.++.+|... ..|+++.|..+|++++...|. +...|..+|..+...|.+++|...+++++..+|+ .
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-----~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~---~ 184 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-----NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD---T 184 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-----CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS---H
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-----chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc---h
Confidence 466677777777655 777788888888888777765 4567777777777888888888888888777775 4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHH
Q 007407 501 KRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQA--EVLWLMGAKE 578 (605)
Q Consensus 501 ~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~--~~l~l~~a~~ 578 (605)
...++..+..+...+..+.|+..|++++..+|++..+|+.+|.++...|++++|+..|++++..+|++ ..+|..++.+
T Consensus 185 ~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~ 264 (287)
T 3qou_A 185 RYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEI 264 (287)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHH
Confidence 44455555556666777788888899999999999999999999999999999999999999988887 7888888888
Q ss_pred HHHcCChHHHHHHHHHHHHH
Q 007407 579 KWLAGDVPATRDILQEAYAA 598 (605)
Q Consensus 579 ~~~~gd~~~Ar~il~kAl~~ 598 (605)
+...|+.++|...|++++..
T Consensus 265 ~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 265 LAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp HHHHCTTCHHHHHHHHHHHH
T ss_pred HHHcCCCCcHHHHHHHHHHH
Confidence 88888888888888888753
No 89
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.51 E-value=7.4e-14 Score=159.48 Aligned_cols=172 Identities=12% Similarity=-0.021 Sum_probs=157.4
Q ss_pred hCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007407 421 KLPKERAIWIAAAKLEANGNTSMVGKIIERGI--------RALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIE 492 (605)
Q Consensus 421 ~~p~~~~iwi~~a~Le~~g~~~~a~~i~~~al--------~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~ 492 (605)
..|.++.+++..+ ...|++++|...|++++ +..|. +...|...|..+...|+++.|...|++++.
T Consensus 389 ~~p~~~~a~~~~a--~~~~~~~~A~~~~~~al~~~~~~~~~~~p~-----~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 461 (681)
T 2pzi_A 389 VDPTDVAASVLQA--TVLSQPVQTLDSLRAARHGALDADGVDFSE-----SVELPLMEVRALLDLGDVAKATRKLDDLAE 461 (681)
T ss_dssp CCTTSTTHHHHHH--TTTCCHHHHHHHHHHHHTC-------CCTT-----CSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCCcchHHhhc--ccccCHHHHHHHHHHhhhhccccccccccc-----chhHHHHHHHHHHhcCCHHHHHHHHHHHhc
Confidence 3567777666544 36789999999999999 55444 567899999999999999999999999999
Q ss_pred hCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 007407 493 IGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLW 572 (605)
Q Consensus 493 ~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~ 572 (605)
.+|+ +..+|+.++..+...|++++|+..|+++++.+|++..+|+.+|.++...|++++ +..|++|++.+|++..+|
T Consensus 462 ~~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~ 537 (681)
T 2pzi_A 462 RVGW---RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAA 537 (681)
T ss_dssp HHCC---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHH
T ss_pred cCcc---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHH
Confidence 9998 889999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCC
Q 007407 573 LMGAKEKWLAGDVPATRDILQEAYAAIPNSE 603 (605)
Q Consensus 573 l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~ 603 (605)
+.+|.++...|++++|...|++|++.+|++.
T Consensus 538 ~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~ 568 (681)
T 2pzi_A 538 FGLARARSAEGDRVGAVRTLDEVPPTSRHFT 568 (681)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCTTSTTHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHhhcccCcccH
Confidence 9999999999999999999999999999863
No 90
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.50 E-value=5.4e-12 Score=131.84 Aligned_cols=278 Identities=11% Similarity=-0.022 Sum_probs=197.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHH-----HHHHHhhc----CchhHHHHHHHHHhhCCCcHHHHHHHH
Q 007407 286 LGWIQAARLEELANEEAAARKLITKGCNMCPKNEDV-----WLEACRLA----RPDEAKSVVAKGVRQIPKSANKIRALR 356 (605)
Q Consensus 286 ~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~l-----wle~a~L~----~~~~Ak~~l~~al~~~P~s~~a~~vl~ 356 (605)
..+...+.+....|+++.|..++++++...|.+... +...+.++ ..+.|. ..++
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-----------------~~~~ 77 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSL-----------------ALMQ 77 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHH-----------------HHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHH-----------------HHHH
Confidence 345667778888999999999999999998876432 22222221 112333 4444
Q ss_pred HHHHhCCCcHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhcHHHHHHHHHHHHHhCC--------CCHHH
Q 007407 357 MALDEIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALVRLETYGVARSVLNKARKKLP--------KERAI 428 (605)
Q Consensus 357 kAle~~P~~~~lw~~l~~le~~e~A~~~l~rAl~~~P~~~~lw~aLa~le~~e~A~~vL~~al~~~p--------~~~~i 428 (605)
+++...|.....+ ..+...+ .+-..+...++++.|...+++++...+ ....+
T Consensus 78 ~al~~~~~~~~~~---------~~~~~~~-----------~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 137 (373)
T 1hz4_A 78 QTEQMARQHDVWH---------YALWSLI-----------QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFL 137 (373)
T ss_dssp HHHHHHHHTTCHH---------HHHHHHH-----------HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHH
T ss_pred HHHHHHHhcCcHH---------HHHHHHH-----------HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHH
Confidence 4444333211111 0111111 111223456789999999999988752 23345
Q ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--chhhHHHH-
Q 007407 429 WIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVD--EEDKKRTW- 504 (605)
Q Consensus 429 wi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~--~~~~~~~~- 504 (605)
+..++.+. ..|++++|..++++++...+..+.......|...+..+...|+++.|...+++++...+. .+......
T Consensus 138 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 217 (373)
T 1hz4_A 138 VRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNA 217 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHH
Confidence 66678777 899999999999999999877654445577888999999999999999999999886332 11111111
Q ss_pred -HHHHHHHHHcCCHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHH
Q 007407 505 -VADVEECKKRGSIETARAIFSPACTVFLTK----KNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQA------EVLWL 573 (605)
Q Consensus 505 -~~~a~~~~~~g~~~~A~~i~~~al~~~P~~----~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~------~~l~l 573 (605)
...+..+...|++++|+..+++++...|.. ...+..++.++...|++++|...+++++...+.. ..++.
T Consensus 218 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~ 297 (373)
T 1hz4_A 218 NKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLL 297 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 234556789999999999999999877653 3467889999999999999999999999875421 24778
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCC
Q 007407 574 MGAKEKWLAGDVPATRDILQEAYAAIP 600 (605)
Q Consensus 574 ~~a~~~~~~gd~~~Ar~il~kAl~~~P 600 (605)
.+|.+++..|++++|+..|.+|+...+
T Consensus 298 ~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 298 LLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 889999999999999999999998754
No 91
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.50 E-value=6.8e-13 Score=131.19 Aligned_cols=222 Identities=17% Similarity=0.100 Sum_probs=141.7
Q ss_pred CHHHHHHHHHHHHHhC--------CCCHHHHHHHHHh----hcHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHH
Q 007407 377 SEEEARILLHRAVECC--------PLDVELWLALVRL----ETYGVARSVLNKARKKL--------PKERAIWIAAAKLE 436 (605)
Q Consensus 377 ~~e~A~~~l~rAl~~~--------P~~~~lw~aLa~l----e~~e~A~~vL~~al~~~--------p~~~~iwi~~a~Le 436 (605)
+++.|+.+|++|++.. |....+|..++.+ ++++.|...+++++... |....+|..++.+.
T Consensus 16 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~ 95 (283)
T 3edt_B 16 PRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLY 95 (283)
T ss_dssp CSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH
Confidence 4456666666666532 4445555555543 46777777777777663 33445666677666
Q ss_pred -HcCCHHHHHHHHHHHHHHhccCc---ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCchhhHHHHHHH
Q 007407 437 -ANGNTSMVGKIIERGIRALQGEE---VVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEI-----GVDEEDKKRTWVAD 507 (605)
Q Consensus 437 -~~g~~~~a~~i~~~al~~~p~~~---~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~-----~p~~~~~~~~~~~~ 507 (605)
..|++++|..+|++++....... .+.....|...|..+...|++++|...+++++.. +++.+....++..+
T Consensus 96 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 175 (283)
T 3edt_B 96 GKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNL 175 (283)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 77777777777777777653221 1234566777777777777777777777777776 12223356667777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh---------cCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHhCCCCHHHH
Q 007407 508 VEECKKRGSIETARAIFSPACTV---------FLTKKNIWLKAAQLEKSYGC------RESLIALLRKAVTYCPQAEVLW 572 (605)
Q Consensus 508 a~~~~~~g~~~~A~~i~~~al~~---------~P~~~~~w~~la~l~~~~g~------~e~A~~~lekAl~~~P~~~~l~ 572 (605)
+.++...|++++|..+|+++++. .|....+|..++.++...+. +..+...++......|....++
T Consensus 176 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (283)
T 3edt_B 176 ASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTL 255 (283)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 77777777777777777777765 34455666666666654433 2223333332222234556788
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHH
Q 007407 573 LMGAKEKWLAGDVPATRDILQEAYAA 598 (605)
Q Consensus 573 l~~a~~~~~~gd~~~Ar~il~kAl~~ 598 (605)
..+|.++...|++++|..+|++|++.
T Consensus 256 ~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 256 RSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999875
No 92
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.49 E-value=9.1e-13 Score=146.71 Aligned_cols=162 Identities=15% Similarity=0.131 Sum_probs=97.9
Q ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHH
Q 007407 407 TYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVA 485 (605)
Q Consensus 407 ~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~ 485 (605)
++++|...|+++++..|.+..+|..+|.+. ..|++++|...|+++++..|. +...|..+|..+...|++++|..
T Consensus 4 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 4 DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-----HPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp -----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-----CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHCCCHHHHHH
Confidence 456666777777777777777777777655 667777777777777666544 35566666666666677777777
Q ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHH
Q 007407 486 IITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSY---GCRESLIALLRKAV 562 (605)
Q Consensus 486 i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~---g~~e~A~~~lekAl 562 (605)
.|++++..+|+ +...|..++..+...|++++|+..|+++++.+|++..+|..++.++... |++++|...|++++
T Consensus 79 ~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 79 LLQQASDAAPE---HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHhcCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 77777776666 5666666666677777777777777777777777777777777777666 66777777777777
Q ss_pred HhCCCCHHHHHHHH
Q 007407 563 TYCPQAEVLWLMGA 576 (605)
Q Consensus 563 ~~~P~~~~l~l~~a 576 (605)
..+|.+...|..++
T Consensus 156 ~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 156 AQGVGAVEPFAFLS 169 (568)
T ss_dssp HHTCCCSCHHHHTT
T ss_pred hcCCcccChHHHhC
Confidence 77766655555444
No 93
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.48 E-value=3.2e-13 Score=123.46 Aligned_cols=116 Identities=16% Similarity=0.110 Sum_probs=97.1
Q ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 007407 486 IITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYC 565 (605)
Q Consensus 486 i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~ 565 (605)
.|++++..+|+ +...|+..+..+...|++++|+..|++++..+|++..+|+.+|.++...|++++|+..|++|+..+
T Consensus 9 ~~~~al~~~p~---~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 9 TIAMLNEISSD---TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp SHHHHTTCCHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hHHHHHcCCHh---hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 46667777665 777888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCCC
Q 007407 566 PQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSEE 604 (605)
Q Consensus 566 P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~~ 604 (605)
|+++.+|+.+|.++...|++++|...|+++++.+|+++.
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 124 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPE 124 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCc
Confidence 888888888888888888888888888888888887653
No 94
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.48 E-value=9.8e-13 Score=132.35 Aligned_cols=223 Identities=15% Similarity=0.067 Sum_probs=161.2
Q ss_pred CCCcHHHHHHHHHHHHh--------CCCcHHHHHHHH----HhCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHH
Q 007407 345 IPKSANKIRALRMALDE--------IPDSVRLWKALV----EISSEEEARILLHRAVECC--------PLDVELWLALVR 404 (605)
Q Consensus 345 ~P~s~~a~~vl~kAle~--------~P~~~~lw~~l~----~le~~e~A~~~l~rAl~~~--------P~~~~lw~aLa~ 404 (605)
..+...|...++++++. .|.....|..++ ..+++++|+.+|+++++.. |....++..++.
T Consensus 40 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 119 (311)
T 3nf1_A 40 QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAV 119 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 34447889999999984 566666666554 3458999999999999874 445566666665
Q ss_pred h----hcHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCc---ccccHHHHH
Q 007407 405 L----ETYGVARSVLNKARKKL--------PKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEE---VVIDRDTWM 468 (605)
Q Consensus 405 l----e~~e~A~~vL~~al~~~--------p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~---~~~~~~~wl 468 (605)
+ +++++|...++++++.. |....+|..++.+. ..|++++|..+|++++....... .+.....|.
T Consensus 120 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 199 (311)
T 3nf1_A 120 LYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKN 199 (311)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4 47999999999999885 44556788888877 99999999999999999854321 133567888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC------ch------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH
Q 007407 469 KEAEVADRAGSVVTCVAIITNTIEIGVD------EE------DKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKN 536 (605)
Q Consensus 469 ~~A~~~e~~g~~~~A~~i~~~al~~~p~------~~------~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~ 536 (605)
..|..+...|+++.|...+++++...+. .+ .....+...+..+...+.+.+|...+..++...|....
T Consensus 200 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 279 (311)
T 3nf1_A 200 NLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTT 279 (311)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHH
Confidence 9999999999999999999999975322 00 02233344445555666777888899999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 007407 537 IWLKAAQLEKSYGCRESLIALLRKAVTYCPQ 567 (605)
Q Consensus 537 ~w~~la~l~~~~g~~e~A~~~lekAl~~~P~ 567 (605)
+|..+|.++...|++++|..+|++|++..|+
T Consensus 280 ~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 280 TLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999998775
No 95
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.45 E-value=2.8e-13 Score=122.31 Aligned_cols=116 Identities=14% Similarity=0.070 Sum_probs=95.0
Q ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 007407 486 IITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYC 565 (605)
Q Consensus 486 i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~ 565 (605)
.|+.++..+|+ +...++..+..+...|++++|+..|++++..+|++..+|+.+|.++...|++++|+..|++|+..+
T Consensus 6 ~l~~al~~~p~---~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 82 (142)
T 2xcb_A 6 TLAMLRGLSED---TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD 82 (142)
T ss_dssp ---CCTTCCHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHcCCHH---HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 45556666655 777788888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCCC
Q 007407 566 PQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSEE 604 (605)
Q Consensus 566 P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~~ 604 (605)
|+++.+|+.+|.++...|++++|...|+++++.+|+++.
T Consensus 83 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 121 (142)
T 2xcb_A 83 INEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPA 121 (142)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGG
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Confidence 888888888888888888888888888888888887653
No 96
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.44 E-value=5.6e-12 Score=132.64 Aligned_cols=233 Identities=12% Similarity=0.066 Sum_probs=154.9
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCC---CHHHH--HHHHHh------hcHHHHH-----------HHHHHHHHhCCC
Q 007407 367 RLWKALVEISSEEEARILLHRAVECCPL---DVELW--LALVRL------ETYGVAR-----------SVLNKARKKLPK 424 (605)
Q Consensus 367 ~lw~~l~~le~~e~A~~~l~rAl~~~P~---~~~lw--~aLa~l------e~~e~A~-----------~vL~~al~~~p~ 424 (605)
.-|...+.-.+.++|..+++.+.+..+. +.++. +.+..+ .....+. ..++++- ..|.
T Consensus 17 ~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~-~~~~ 95 (383)
T 3ulq_A 17 NEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEID-KKQA 95 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHH-HHTH
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHH-hcCC
Confidence 3477777777788888877777655432 44433 222211 1222333 4444432 2333
Q ss_pred CHHHHH------HHHHHH-HcCCHHHHHHHHHHHHHHhccCcc-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 007407 425 ERAIWI------AAAKLE-ANGNTSMVGKIIERGIRALQGEEV-VIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVD 496 (605)
Q Consensus 425 ~~~iwi------~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~-~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~ 496 (605)
+...++ ..|.+. ..|++++|...|++++......+. ......|...|..+...|+++.|...+.+++.+.+.
T Consensus 96 ~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~ 175 (383)
T 3ulq_A 96 RLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKE 175 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred CchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 333233 356666 778888888888888876544322 124467777888888888888888888888876433
Q ss_pred c----hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHH---
Q 007407 497 E----EDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKK------NIWLKAAQLEKSYGCRESLIALLRKAVT--- 563 (605)
Q Consensus 497 ~----~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~------~~w~~la~l~~~~g~~e~A~~~lekAl~--- 563 (605)
. +....++..++..+...|++++|...|.++++..|... .+|..+|.++...|++++|+..|++|+.
T Consensus 176 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 255 (383)
T 3ulq_A 176 HEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFE 255 (383)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 1 22345677778888888888888888888887755432 4777888888888888888888888888
Q ss_pred --hC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCC
Q 007407 564 --YC-PQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIP 600 (605)
Q Consensus 564 --~~-P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P 600 (605)
.+ |....++..+|.++...|++++|...+++|+++.+
T Consensus 256 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 295 (383)
T 3ulq_A 256 ESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ 295 (383)
T ss_dssp HTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 34 66677788888888888888888888888887643
No 97
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.43 E-value=1.2e-12 Score=122.48 Aligned_cols=166 Identities=8% Similarity=-0.059 Sum_probs=132.8
Q ss_pred CCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHH
Q 007407 424 KERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKR 502 (605)
Q Consensus 424 ~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~ 502 (605)
...+.++..+... ..|++++|...|+++++..|. +...|..+|..+...|.+++|...+++++...| ++.
T Consensus 4 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-----~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~--- 74 (176)
T 2r5s_A 4 SPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQS-----RGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNS--- 74 (176)
T ss_dssp --CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHT-----SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHH---
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-----cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChH---
Confidence 3334566777655 888899999999998888776 467888888888889999999999999888877 332
Q ss_pred HHHHHHHH-HHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHH
Q 007407 503 TWVADVEE-CKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQA--EVLWLMGAKEK 579 (605)
Q Consensus 503 ~~~~~a~~-~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~--~~l~l~~a~~~ 579 (605)
.+...+.+ +...+....|+..|+++++.+|++..+|+.+|.++...|++++|+..|++++..+|+. +.+|..++.++
T Consensus 75 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~ 154 (176)
T 2r5s_A 75 YKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDIL 154 (176)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHH
Confidence 22222222 1122233457999999999999999999999999999999999999999999999875 66999999999
Q ss_pred HHcCChHHHHHHHHHHHHH
Q 007407 580 WLAGDVPATRDILQEAYAA 598 (605)
Q Consensus 580 ~~~gd~~~Ar~il~kAl~~ 598 (605)
...|+.++|...|++++..
T Consensus 155 ~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 155 SALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp HHHCSSCHHHHHHHHHHHH
T ss_pred HHhCCCCcHHHHHHHHHHH
Confidence 9999999999999999863
No 98
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.41 E-value=2.3e-12 Score=120.04 Aligned_cols=126 Identities=8% Similarity=0.068 Sum_probs=101.8
Q ss_pred HcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH-HHHcCCH--H
Q 007407 476 RAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQL-EKSYGCR--E 552 (605)
Q Consensus 476 ~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l-~~~~g~~--e 552 (605)
..|+++.|...++.++..+|. +..+|+.++..+...|++++|+.+|+++++.+|++..+|..+|.+ +...|++ +
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQ---NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp -----CCCCHHHHHHHHHCCS---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hccCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 356677788888888888877 677888888888888888888888888888888888888888888 7778887 8
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCCC
Q 007407 553 SLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSEE 604 (605)
Q Consensus 553 ~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~~ 604 (605)
+|+.+|++++..+|+++.+|..+|.++...|++++|...|.++++.+|+++.
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 8888888888888888888888888888888888888888888888887753
No 99
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.41 E-value=3.5e-11 Score=130.44 Aligned_cols=309 Identities=15% Similarity=0.081 Sum_probs=210.1
Q ss_pred hhhccH---HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhc-----CHHHHHHHHHHHHhhCCCCHHHHHHHHhhcC--c
Q 007407 262 SELRDI---LKARKIVRAVTKNSPKKPLGWIQAARLEELAN-----EEAAARKLITKGCNMCPKNEDVWLEACRLAR--P 331 (605)
Q Consensus 262 ~~~gd~---~kAr~ll~~al~~~P~~~~~wia~Arle~~~g-----~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~--~ 331 (605)
...|+. .+|...|+++++. ++.++..++.+....+ ++++|...++++++..+ ...++.++.++. .
T Consensus 46 ~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~--~~A~~~Lg~~y~~~~ 120 (452)
T 3e4b_A 46 VGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGE--GNTLIPLAMLYLQYP 120 (452)
T ss_dssp ----------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTC--SSCHHHHHHHHHHCG
T ss_pred HccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhCC
Confidence 345555 8999999999976 6777888888554433 78899999999998554 445555555431 1
Q ss_pred -----hhHHHHHHHHHhh-CCCc------------------HHHHHHHHHHHHhCCCcHHHHHHH----HHhC---CHHH
Q 007407 332 -----DEAKSVVAKGVRQ-IPKS------------------ANKIRALRMALDEIPDSVRLWKAL----VEIS---SEEE 380 (605)
Q Consensus 332 -----~~Ak~~l~~al~~-~P~s------------------~~a~~vl~kAle~~P~~~~lw~~l----~~le---~~e~ 380 (605)
..+...+.++... .|.. ..+..+++.+....|. .+..+ ...+ ++++
T Consensus 121 ~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~ 197 (452)
T 3e4b_A 121 HSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAE 197 (452)
T ss_dssp GGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHH
Confidence 1233344433322 1111 3355667777777776 33333 2334 6799
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhh--------cHHHHHHHHHHHHHhCCCCHHHHHHHHHH-H---HcCCHHHHHHHH
Q 007407 381 ARILLHRAVECCPLDVELWLALVRLE--------TYGVARSVLNKARKKLPKERAIWIAAAKL-E---ANGNTSMVGKII 448 (605)
Q Consensus 381 A~~~l~rAl~~~P~~~~lw~aLa~le--------~~e~A~~vL~~al~~~p~~~~iwi~~a~L-e---~~g~~~~a~~i~ 448 (605)
|+..|+++.+..|.+...+..|+.++ +++.|...|+++. |.++.+++.++.+ . ..++.++|...|
T Consensus 198 A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~ 274 (452)
T 3e4b_A 198 LLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYL 274 (452)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 99999999999999999777776653 5789999999987 8999999999975 2 567899999999
Q ss_pred HHHHHHhccCcccccHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH----cCCHHH
Q 007407 449 ERGIRALQGEEVVIDRDTWMKEAEVADRAG-----SVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKK----RGSIET 519 (605)
Q Consensus 449 ~~al~~~p~~~~~~~~~~wl~~A~~~e~~g-----~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~----~g~~~~ 519 (605)
+++++.. ....+..++..+. .| ++.+|...|+++. +. +...++.++.++.. ..++++
T Consensus 275 ~~Aa~~g-------~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g---~~~A~~~Lg~~y~~G~g~~~d~~~ 340 (452)
T 3e4b_A 275 DNGRAAD-------QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GR---EVAADYYLGQIYRRGYLGKVYPQK 340 (452)
T ss_dssp HHHHHTT-------CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TT---CHHHHHHHHHHHHTTTTSSCCHHH
T ss_pred HHHHHCC-------CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CC---CHHHHHHHHHHHHCCCCCCcCHHH
Confidence 9998642 4667888888777 55 8999999999998 44 67888889988876 349999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HcCChHHHHHHHH
Q 007407 520 ARAIFSPACTVFLTKKNIWLKAAQLEKS----YGCRESLIALLRKAVTYCPQAEVLWLMGAKEKW--LAGDVPATRDILQ 593 (605)
Q Consensus 520 A~~i~~~al~~~P~~~~~w~~la~l~~~----~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~--~~gd~~~Ar~il~ 593 (605)
|+..|+++.+ +++..+++.+|.++.. ..++.+|...|++|....+ +.....++.+.. ..+++.+|...+.
T Consensus 341 A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~--~~a~~~l~~l~~~~~~~~~~~a~~~~~ 416 (452)
T 3e4b_A 341 ALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT--PEANDLATQLEAPLTPAQRAEGQRLVQ 416 (452)
T ss_dssp HHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC--HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999987 5678889999999985 3589999999999998764 444444444432 2457788888888
Q ss_pred HHHHHC
Q 007407 594 EAYAAI 599 (605)
Q Consensus 594 kAl~~~ 599 (605)
+..+..
T Consensus 417 ~~~~~~ 422 (452)
T 3e4b_A 417 QELAAR 422 (452)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 776654
No 100
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.41 E-value=6.7e-12 Score=111.37 Aligned_cols=113 Identities=7% Similarity=-0.100 Sum_probs=106.9
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 007407 463 DRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAA 542 (605)
Q Consensus 463 ~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la 542 (605)
..+.|...|..+.+.|++++|...|++++..+|. +..+|..++..+...|++++|+..|+++++++|++..+|+.+|
T Consensus 12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg 88 (126)
T 4gco_A 12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE---NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKA 88 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 4567888899999999999999999999999998 8899999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 007407 543 QLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKE 578 (605)
Q Consensus 543 ~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~ 578 (605)
.++...|++++|+..|+++++.+|+++.++..++.+
T Consensus 89 ~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 89 ACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 999999999999999999999999999998888765
No 101
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.39 E-value=5.4e-12 Score=140.47 Aligned_cols=157 Identities=10% Similarity=-0.003 Sum_probs=103.6
Q ss_pred CCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHH
Q 007407 439 GNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIE 518 (605)
Q Consensus 439 g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~ 518 (605)
|++++|...|+++++..|. +...|...|..+...|++++|...|++++..+|+ +..+|..++..+...|+++
T Consensus 3 g~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~ 74 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQ-----DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG---HPEAVARLGRVRWTQQRHA 74 (568)
T ss_dssp ------------------C-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT---CHHHHHHHHHHHHHTTCHH
T ss_pred ccHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHH
Confidence 5566777777777766554 4566777777777777777777777777777766 6667777777777777777
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CChHHHHHHHHHH
Q 007407 519 TARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLA---GDVPATRDILQEA 595 (605)
Q Consensus 519 ~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~---gd~~~Ar~il~kA 595 (605)
+|...|+++++.+|++..+|..+|.++...|++++|++.|+++++.+|++..+|..++.++... |++++|...|+++
T Consensus 75 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 75 EAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 7777777777777777777777777777777777777777777777777777777777777777 7777777777777
Q ss_pred HHHCCCCC
Q 007407 596 YAAIPNSE 603 (605)
Q Consensus 596 l~~~P~~~ 603 (605)
++.+|++.
T Consensus 155 l~~~p~~~ 162 (568)
T 2vsy_A 155 VAQGVGAV 162 (568)
T ss_dssp HHHTCCCS
T ss_pred HhcCCccc
Confidence 77777653
No 102
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.38 E-value=1.2e-11 Score=125.63 Aligned_cols=165 Identities=12% Similarity=0.014 Sum_probs=141.7
Q ss_pred CCCCHHHHHHHHH----hhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHH
Q 007407 392 CPLDVELWLALVR----LETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDT 466 (605)
Q Consensus 392 ~P~~~~lw~aLa~----le~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~ 466 (605)
.|.+.+.++.++. .++++.|...|+++++..|.++.+|+.++.+. ..|++++|..+|++++...|. ....
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~-----~~~~ 187 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD-----TRYQ 187 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS-----HHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc-----hHHH
Confidence 4777777776654 35789999999999999999999999999877 899999999999998877663 2334
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC--HHHHHHHHHH
Q 007407 467 WMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTK--KNIWLKAAQL 544 (605)
Q Consensus 467 wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~--~~~w~~la~l 544 (605)
++..+..+...+....|...+++++..+|+ +..+++.+|..+...|++++|+..|.++++.+|++ ..+|..++.+
T Consensus 188 ~~~~~~~l~~~~~~~~a~~~l~~al~~~P~---~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~ 264 (287)
T 3qou_A 188 GLVAQIELLXQAADTPEIQQLQQQVAENPE---DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEI 264 (287)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHH
T ss_pred HHHHHHHHHhhcccCccHHHHHHHHhcCCc---cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHH
Confidence 444455555666677889999999999998 88999999999999999999999999999999998 8999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHh
Q 007407 545 EKSYGCRESLIALLRKAVTY 564 (605)
Q Consensus 545 ~~~~g~~e~A~~~lekAl~~ 564 (605)
+...|+.++|...|++++..
T Consensus 265 ~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 265 LAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp HHHHCTTCHHHHHHHHHHHH
T ss_pred HHHcCCCCcHHHHHHHHHHH
Confidence 99999999999999999863
No 103
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.37 E-value=4.8e-11 Score=116.27 Aligned_cols=175 Identities=6% Similarity=0.007 Sum_probs=115.1
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCCH---HHHHHHHH----hhcHHHHHHHHHHHHHhCCCCHH---HHHHHHHHH-HcCCH
Q 007407 373 VEISSEEEARILLHRAVECCPLDV---ELWLALVR----LETYGVARSVLNKARKKLPKERA---IWIAAAKLE-ANGNT 441 (605)
Q Consensus 373 ~~le~~e~A~~~l~rAl~~~P~~~---~lw~aLa~----le~~e~A~~vL~~al~~~p~~~~---iwi~~a~Le-~~g~~ 441 (605)
...+++++|+..|+++++..|.+. .+++.++. .+++++|...|+++++..|+++. +|+.++.+. ..|..
T Consensus 15 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~ 94 (225)
T 2yhc_A 15 LQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDS 94 (225)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC-
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhh
Confidence 344566667777777776666553 34443332 24566666666666666666543 444444433 22110
Q ss_pred HHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhH--------------HHHHHH
Q 007407 442 SMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKK--------------RTWVAD 507 (605)
Q Consensus 442 ~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~--------------~~~~~~ 507 (605)
. ...|...+......|+.+.|...|++++...|+++.-. ...+..
T Consensus 95 -----~----------------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~ 153 (225)
T 2yhc_A 95 -----A----------------LQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSV 153 (225)
T ss_dssp ----------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----h----------------hhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 01122223333345678888888888888888743111 122567
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 007407 508 VEECKKRGSIETARAIFSPACTVFLTKK---NIWLKAAQLEKSYGCRESLIALLRKAVTYCPQA 568 (605)
Q Consensus 508 a~~~~~~g~~~~A~~i~~~al~~~P~~~---~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~ 568 (605)
+.++...|++.+|+..|+++++.+|+++ .+|..++.++.+.|++++|++.|+++....|++
T Consensus 154 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 154 AEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 8889999999999999999999999986 679999999999999999999999999988865
No 104
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.37 E-value=1.1e-11 Score=127.07 Aligned_cols=223 Identities=8% Similarity=-0.018 Sum_probs=158.8
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHH-hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhcHHHHHHHHHHHHHhCCCC---
Q 007407 350 NKIRALRMALDEIPDSVRLWKALVE-ISSEEEARILLHRAVECCPLDVELWLALVRLETYGVARSVLNKARKKLPKE--- 425 (605)
Q Consensus 350 ~a~~vl~kAle~~P~~~~lw~~l~~-le~~e~A~~~l~rAl~~~P~~~~lw~aLa~le~~e~A~~vL~~al~~~p~~--- 425 (605)
.+...+++|....|.+. .. -.+++.|..+|.++.. .+...++++.|...|.+++...+..
T Consensus 9 eA~~~~~~a~k~~~~~~------~~~~~~~~~A~~~~~~a~~----------~~~~~g~~~~A~~~~~~al~~~~~~~~~ 72 (307)
T 2ifu_A 9 EAHEHIAKAEKYLKTSF------MKWKPDYDSAASEYAKAAV----------AFKNAKQLEQAKDAYLQEAEAHANNRSL 72 (307)
T ss_dssp HHHHHHHHHHHHHCCCS------SSCSCCHHHHHHHHHHHHH----------HHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHccccc------cCCCCCHHHHHHHHHHHHH----------HHHHcCCHHHHHHHHHHHHHHHHHcCCH
Confidence 45667777777666431 11 2467888888887632 2345567888888888888876432
Q ss_pred ---HHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch--
Q 007407 426 ---RAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVI-DRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEE-- 498 (605)
Q Consensus 426 ---~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~-~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~-- 498 (605)
..++..++.+. ..|++++|...|++++...+..+.+. ....|...+..+.. |+++.|...|++++.+.+...
T Consensus 73 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~ 151 (307)
T 2ifu_A 73 FHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERL 151 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCCh
Confidence 34566777777 88899999999999998887655322 34567788888877 889999999999988765421
Q ss_pred -hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--
Q 007407 499 -DKKRTWVADVEECKKRGSIETARAIFSPACTVFLTK------KNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAE-- 569 (605)
Q Consensus 499 -~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~------~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~-- 569 (605)
....++...+.++...|++++|+.+|++++.+.|.. ..+|..++.++...|++++|+..|++++ .+|...
T Consensus 152 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~ 230 (307)
T 2ifu_A 152 RQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGS 230 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTS
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCC
Confidence 124677888888889999999999999998887653 3477778888888899999999999999 888542
Q ss_pred -H--HHHHHHHHHHHcCChHHHHHH
Q 007407 570 -V--LWLMGAKEKWLAGDVPATRDI 591 (605)
Q Consensus 570 -~--l~l~~a~~~~~~gd~~~Ar~i 591 (605)
. +...++.. +..|+.+.+..+
T Consensus 231 ~e~~~l~~l~~~-~~~~d~~~~~~~ 254 (307)
T 2ifu_A 231 EDCAALEDLLQA-YDEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHHHHHH-HHTTCHHHHHHH
T ss_pred HHHHHHHHHHHH-HHhcCHHHHHHH
Confidence 2 22333333 357787776663
No 105
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.36 E-value=4.6e-12 Score=111.51 Aligned_cols=104 Identities=13% Similarity=0.081 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 007407 502 RTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWL 581 (605)
Q Consensus 502 ~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~ 581 (605)
..|+..+..+...|++++|+..|+++++.+|++..+|+.+|.++...|++++|+..|++|+..+|+++.+|..+|.++..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHHCCCCCCC
Q 007407 582 AGDVPATRDILQEAYAAIPNSEEI 605 (605)
Q Consensus 582 ~gd~~~Ar~il~kAl~~~P~~~~I 605 (605)
.|++++|+..|+++++.+|++..+
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~~~ 121 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYEQL 121 (121)
T ss_dssp HHHHHHHHHHHHHHHC--------
T ss_pred cCCHHHHHHHHHHHHHhCcCCCCC
Confidence 999999999999999999988653
No 106
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.36 E-value=4.2e-11 Score=108.97 Aligned_cols=134 Identities=7% Similarity=-0.065 Sum_probs=123.1
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 007407 463 DRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAA 542 (605)
Q Consensus 463 ~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la 542 (605)
....|...|..+...|+++.|...+++++..+|. +..+|...+..+...|++++|+..|.+++..+|++..+|..+|
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a 88 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPS---NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 3467888999999999999999999999999988 7889999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHcCChHHHHHHHHHHHHHC
Q 007407 543 QLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKE--KWLAGDVPATRDILQEAYAAI 599 (605)
Q Consensus 543 ~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~--~~~~gd~~~Ar~il~kAl~~~ 599 (605)
.++...|++++|+..|++++..+|++..+|..++.. +...|++++|..++.++....
T Consensus 89 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 89 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 999999999999999999999999999888655554 777899999999999987654
No 107
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.36 E-value=6.7e-12 Score=110.10 Aligned_cols=100 Identities=12% Similarity=-0.003 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007407 500 KKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEK 579 (605)
Q Consensus 500 ~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~ 579 (605)
....|...+..+...|++++|+..|.++++.+|++..+|..+|.++...|++++|+..|++++..+|+++.+|+.+|.++
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 34455555555666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHcCChHHHHHHHHHHHHHC
Q 007407 580 WLAGDVPATRDILQEAYAAI 599 (605)
Q Consensus 580 ~~~gd~~~Ar~il~kAl~~~ 599 (605)
...|++++|...|.++++.+
T Consensus 83 ~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhC
Confidence 66666666666666666665
No 108
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.35 E-value=7.4e-11 Score=122.13 Aligned_cols=187 Identities=10% Similarity=0.058 Sum_probs=162.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCC----------HHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHH
Q 007407 408 YGVARSVLNKARKKLPKERAIWIAAAKLE-ANGN----------TSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADR 476 (605)
Q Consensus 408 ~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~----------~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~ 476 (605)
.++|...+.+++..+|.+..+|..-..+- ..+. +.+...+++.++...|+ +..+|.-....+..
T Consensus 46 s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-----ny~aW~hR~wlL~~ 120 (331)
T 3dss_A 46 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-----SYGTWHHRCWLLSR 120 (331)
T ss_dssp SHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHhc
Confidence 35799999999999999999999977533 3332 56778888888888876 67899998888888
Q ss_pred cC--CHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-----
Q 007407 477 AG--SVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGS-IETARAIFSPACTVFLTKKNIWLKAAQLEKSY----- 548 (605)
Q Consensus 477 ~g--~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~-~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~----- 548 (605)
.| ....+...+.+++..+|. +..+|....-++...|. +++++..+.++++.+|.+.++|..++.+....
T Consensus 121 l~~~~~~~EL~~~~k~l~~dpr---Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~ 197 (331)
T 3dss_A 121 LPEPNWARELELCARFLEADER---NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 197 (331)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC-
T ss_pred cCcccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccc
Confidence 88 478999999999999998 99999999988888888 69999999999999999999999999998876
Q ss_pred ---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----------CChHHHHHHHHHHHHHCCCC
Q 007407 549 ---------GCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLA-----------GDVPATRDILQEAYAAIPNS 602 (605)
Q Consensus 549 ---------g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~-----------gd~~~Ar~il~kAl~~~P~~ 602 (605)
+.++++++.+.+++..+|++..+|..+..++... +-++++.+.+.++++..|++
T Consensus 198 ~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~ 271 (331)
T 3dss_A 198 SGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN 271 (331)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred cccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc
Confidence 4588999999999999999999998666655543 35789999999999999986
No 109
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.35 E-value=4.3e-11 Score=124.52 Aligned_cols=215 Identities=11% Similarity=0.048 Sum_probs=153.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHH----HHHhh-cHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHc-C-CHHHHHHHHH
Q 007407 378 EEEARILLHRAVECCPLDVELWLA----LVRLE-TYGVARSVLNKARKKLPKERAIWIAAAKL-EAN-G-NTSMVGKIIE 449 (605)
Q Consensus 378 ~e~A~~~l~rAl~~~P~~~~lw~a----La~le-~~e~A~~vL~~al~~~p~~~~iwi~~a~L-e~~-g-~~~~a~~i~~ 449 (605)
.++|+.++.+++..+|.+..+|.. |..++ .++++...++.++..+|.+..+|.....+ ... + ++++...++.
T Consensus 70 se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~ 149 (349)
T 3q7a_A 70 SERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIH 149 (349)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 356777777777777777777753 23344 36777777777777777777777776643 333 5 5666777777
Q ss_pred HHHHHhccCcccccHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCC-----
Q 007407 450 RGIRALQGEEVVIDRDTWMKEAEVADRAGSVV--------TCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGS----- 516 (605)
Q Consensus 450 ~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~--------~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~----- 516 (605)
++++..|+ +...|.-..-.....|..+ .+.+.+.++|..+|. +..+|.....++...+.
T Consensus 150 k~L~~dpk-----Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~---N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 150 GSLLPDPK-----NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR---NNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHTSSCTT-----CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHhCCC-----CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhccccccch
Confidence 77766555 4556665554444444333 788889999999998 89999999988888776
Q ss_pred --HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHhC------CCC
Q 007407 517 --IETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCR--------------------ESLIALLRKAVTYC------PQA 568 (605)
Q Consensus 517 --~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~--------------------e~A~~~lekAl~~~------P~~ 568 (605)
++++...+.+++..+|++.++|..+..++...|.. ..........+... +.+
T Consensus 222 ~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 301 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPV 301 (349)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCC
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCc
Confidence 78999999999999999999999998888887753 23333333333222 467
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHH-HHCC
Q 007407 569 EVLWLMGAKEKWLAGDVPATRDILQEAY-AAIP 600 (605)
Q Consensus 569 ~~l~l~~a~~~~~~gd~~~Ar~il~kAl-~~~P 600 (605)
+.++-.+|.++...|+.++|.+++.... +.+|
T Consensus 302 ~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dp 334 (349)
T 3q7a_A 302 PLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQ 334 (349)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCh
Confidence 8899999999999999999999999976 4455
No 110
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.35 E-value=2.1e-11 Score=117.54 Aligned_cols=174 Identities=9% Similarity=-0.022 Sum_probs=124.6
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHH
Q 007407 373 VEISSEEEARILLHRAVECCPLDVELWLALVRLETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERG 451 (605)
Q Consensus 373 ~~le~~e~A~~~l~rAl~~~P~~~~lw~aLa~le~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~a 451 (605)
...+++++|+..|+++++..|++..+|..+..-.... ..+.++..+|.+. ..|++++|...|+++
T Consensus 15 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~--------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 80 (208)
T 3urz_A 15 IEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSE--------------ISSKLATELALAYKKNRNYDKAYLFYKEL 80 (208)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSH--------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhh--------------hhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3445666666666666666666666555422100000 0122334478766 889999999999999
Q ss_pred HHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCC--HHHHHHHHHHHHH
Q 007407 452 IRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGS--IETARAIFSPACT 529 (605)
Q Consensus 452 l~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~--~~~A~~i~~~al~ 529 (605)
++..|. +...|..+|..+...|+++.|...|++++.++|+ +..+|+.++..+...|. ...+...|..++.
T Consensus 81 l~~~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~ 152 (208)
T 3urz_A 81 LQKAPN-----NVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD---NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS 152 (208)
T ss_dssp HHHCTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C
T ss_pred HHHCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC
Confidence 998876 5678999999999999999999999999999988 78888888887765543 4456667777654
Q ss_pred hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 007407 530 VFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAE 569 (605)
Q Consensus 530 ~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~ 569 (605)
..| ....|+.+|..+...|++++|+..|++|++.+|++.
T Consensus 153 ~~~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 153 PTK-MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp CCH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred CCc-hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence 333 234677788888889999999999999999999743
No 111
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.34 E-value=1.8e-11 Score=112.83 Aligned_cols=111 Identities=11% Similarity=0.020 Sum_probs=69.5
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 007407 463 DRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAA 542 (605)
Q Consensus 463 ~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la 542 (605)
....|...|..+...|+++.|...|++++..+|. +..+|+.++.++...|++++|+..|+++++++|++..+|+.+|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA---NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4455666666666666666666666666666665 5556666666666666666666666666666666666666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 007407 543 QLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGA 576 (605)
Q Consensus 543 ~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a 576 (605)
.++...|++++|+..|++++..+|+++..|+..+
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 6666666666666666666666666655444433
No 112
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.34 E-value=4e-11 Score=126.08 Aligned_cols=223 Identities=12% Similarity=-0.019 Sum_probs=174.8
Q ss_pred HHhCCHHHHHHHHHHHHHhCC---CC---HHHHHHHHH----hhcHHHHHHHHHHHHHhCCCC-------HHHHHHHHHH
Q 007407 373 VEISSEEEARILLHRAVECCP---LD---VELWLALVR----LETYGVARSVLNKARKKLPKE-------RAIWIAAAKL 435 (605)
Q Consensus 373 ~~le~~e~A~~~l~rAl~~~P---~~---~~lw~aLa~----le~~e~A~~vL~~al~~~p~~-------~~iwi~~a~L 435 (605)
...+++++|+..|++|++..+ +. ..++..++. +++++.|...+++|+...+.. ..++..+|.+
T Consensus 112 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 191 (378)
T 3q15_A 112 FDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGN 191 (378)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHH
Confidence 345689999999999998743 32 234444443 457899999999999876531 3356778887
Q ss_pred H-HcCCHHHHHHHHHHHHHHhccCccc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCchhhHHHHHHHH
Q 007407 436 E-ANGNTSMVGKIIERGIRALQGEEVV-IDRDTWMKEAEVADRAGSVVTCVAIITNTIE-----IGVDEEDKKRTWVADV 508 (605)
Q Consensus 436 e-~~g~~~~a~~i~~~al~~~p~~~~~-~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~-----~~p~~~~~~~~~~~~a 508 (605)
. ..|++++|...|++++...+..+.. .....+...|..+...|+++.|...+++++. .+|. ...++..+|
T Consensus 192 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~la 268 (378)
T 3q15_A 192 YDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL---LPKVLFGLS 268 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG---HHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh---HHHHHHHHH
Confidence 7 9999999999999999987654321 2345778889999999999999999999998 4444 678899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhc-----CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007407 509 EECKKRGSIETARAIFSPACTVF-----LTKKNIWLKAAQLEKSYGC---RESLIALLRKAVTYCPQAEVLWLMGAKEKW 580 (605)
Q Consensus 509 ~~~~~~g~~~~A~~i~~~al~~~-----P~~~~~w~~la~l~~~~g~---~e~A~~~lekAl~~~P~~~~l~l~~a~~~~ 580 (605)
..+...|++++|...|+++++.. |.....+..++.++...|+ +.+|+..+++. ...|....++..+|.++.
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHH
Confidence 99999999999999999999985 4445566677788888888 67777777762 112334567888999999
Q ss_pred HcCChHHHHHHHHHHHHHC
Q 007407 581 LAGDVPATRDILQEAYAAI 599 (605)
Q Consensus 581 ~~gd~~~Ar~il~kAl~~~ 599 (605)
..|++++|...|.+++++.
T Consensus 348 ~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 348 SSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999763
No 113
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.34 E-value=5.1e-10 Score=132.04 Aligned_cols=303 Identities=12% Similarity=-0.019 Sum_probs=145.6
Q ss_pred chhhhccHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcCchhHH
Q 007407 260 TNSELRDILKARKIVRAVTKNSPK----KPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLARPDEAK 335 (605)
Q Consensus 260 ~~~~~gd~~kAr~ll~~al~~~P~----~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~~~~Ak 335 (605)
.+...|+...|..+|++++ ..|. |...-..+++...+. +..+...++.+.-.. .-.++-..+..+...++|.
T Consensus 994 af~~aglp~EaieLLEKiv-l~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~--d~~eIA~Iai~lglyEEAf 1069 (1630)
T 1xi4_A 994 AFMTADLPNELIELLEKIV-LDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY--DAPDIANIAISNELFEEAF 1069 (1630)
T ss_pred HHHhCCCHHHHHHHHHHHH-cCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc--cHHHHHHHHHhCCCHHHHH
Confidence 3456677777777777777 3333 333332233333222 223333333322111 1122222233333334555
Q ss_pred HHHHHHHhhCCCc-----HHHHHHHHHHHHhC--CCcHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCCHHHHHHHH-
Q 007407 336 SVVAKGVRQIPKS-----ANKIRALRMALDEI--PDSVRLWKALVE----ISSEEEARILLHRAVECCPLDVELWLALV- 403 (605)
Q Consensus 336 ~~l~~al~~~P~s-----~~a~~vl~kAle~~--P~~~~lw~~l~~----le~~e~A~~~l~rAl~~~P~~~~lw~aLa- 403 (605)
.+|+++.. +.. ..+..-+.+|++.. .++..+|..++. .+++++|+..|.+| ++++.|..++
T Consensus 1070 ~IYkKa~~--~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~ 1142 (1630)
T 1xi4_A 1070 AIFRKFDV--NTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQ 1142 (1630)
T ss_pred HHHHHcCC--HHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHH
Confidence 55555421 111 11223345555444 466777766643 23667777777665 5555655544
Q ss_pred ---HhhcHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcC
Q 007407 404 ---RLETYGVARSVLNKARKKLPKE-RAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAG 478 (605)
Q Consensus 404 ---~le~~e~A~~vL~~al~~~p~~-~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g 478 (605)
++++|++|...|..|++..+.. .+.+ ++... +.++.+....+ +.. .+...|...|..++..|
T Consensus 1143 ~~~~lGkyEEAIeyL~mArk~~~e~~Idt~--LafaYAKl~rleele~f----I~~-------~n~ad~~~iGd~le~eg 1209 (1630)
T 1xi4_A 1143 AANTSGNWEELVKYLQMARKKARESYVETE--LIFALAKTNRLAELEEF----ING-------PNNAHIQQVGDRCYDEK 1209 (1630)
T ss_pred HHHHcCCHHHHHHHHHHHHhhcccccccHH--HHHHHHhhcCHHHHHHH----HhC-------CCHHHHHHHHHHHHhcC
Confidence 3456777777777777665331 1111 22111 22333321111 110 12234555555555555
Q ss_pred CHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-------------------------CC
Q 007407 479 SVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVF-------------------------LT 533 (605)
Q Consensus 479 ~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~-------------------------P~ 533 (605)
.++.|...|..+ ..|...+..+...|+++.|+..+++|.... ..
T Consensus 1210 ~YeeA~~~Y~kA-----------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv 1278 (1630)
T 1xi4_A 1210 MYDAAKLLYNNV-----------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV 1278 (1630)
T ss_pred CHHHHHHHHHhh-----------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhc
Confidence 555555555443 124444444445555555555554441110 11
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--cCChHHHHHHHHHHHH
Q 007407 534 KKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWL--AGDVPATRDILQEAYA 597 (605)
Q Consensus 534 ~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~--~gd~~~Ar~il~kAl~ 597 (605)
++..+..++..|...|.+++|+.+|++|+..+|.|..+|..++.++.+ -++.-++.+.|...+.
T Consensus 1279 ~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rin 1344 (1630)
T 1xi4_A 1279 HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVN 1344 (1630)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 223334566666777777777777777777777776666555554433 4445555555554444
No 114
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.33 E-value=1.3e-10 Score=122.06 Aligned_cols=233 Identities=12% Similarity=0.041 Sum_probs=169.9
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCC---CHHHH--HHHHHh------hcHHHHH---------HHHHHHHHhCCC--C
Q 007407 368 LWKALVEISSEEEARILLHRAVECCPL---DVELW--LALVRL------ETYGVAR---------SVLNKARKKLPK--E 425 (605)
Q Consensus 368 lw~~l~~le~~e~A~~~l~rAl~~~P~---~~~lw--~aLa~l------e~~e~A~---------~vL~~al~~~p~--~ 425 (605)
-|...+.-.+.++|..+++.+.+..+. +..+. ..|..+ ..+..+. ..++++ +..+. +
T Consensus 18 ~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i-~~~~~~~~ 96 (378)
T 3q15_A 18 EWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETI-ETPQKKLT 96 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHH-HGGGHHHH
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHH-hccCCCCc
Confidence 377777777889999988887665432 34443 333221 1111122 444442 22221 1
Q ss_pred H----HHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcc-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--
Q 007407 426 R----AIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEV-VIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDE-- 497 (605)
Q Consensus 426 ~----~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~-~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~-- 497 (605)
. -.|+..|.+. ..|++++|...|++|+...+..+. +.....+...|..+...|++..|...+++++...+..
T Consensus 97 ~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~ 176 (378)
T 3q15_A 97 GLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPL 176 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTT
T ss_pred cHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCC
Confidence 1 1355566666 889999999999999887655322 2345677888889999999999999999998875431
Q ss_pred --hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----h
Q 007407 498 --EDKKRTWVADVEECKKRGSIETARAIFSPACTVFLT------KKNIWLKAAQLEKSYGCRESLIALLRKAVT-----Y 564 (605)
Q Consensus 498 --~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~------~~~~w~~la~l~~~~g~~e~A~~~lekAl~-----~ 564 (605)
.....++...|..+...|++++|...|.++++..+. ...++..+|.++...|++++|+..|++|+. .
T Consensus 177 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~ 256 (378)
T 3q15_A 177 YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKV 256 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC
T ss_pred chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhC
Confidence 124567888899999999999999999999987531 246788899999999999999999999998 6
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCC
Q 007407 565 CPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPN 601 (605)
Q Consensus 565 ~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~ 601 (605)
+|....++..+|.++.+.|++++|...+++|+++.+.
T Consensus 257 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 257 PDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 6777888899999999999999999999999998765
No 115
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.32 E-value=1.4e-10 Score=100.59 Aligned_cols=134 Identities=12% Similarity=0.219 Sum_probs=120.7
Q ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHH
Q 007407 427 AIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWV 505 (605)
Q Consensus 427 ~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~ 505 (605)
.+|..++.+. ..|++++|..+++++++..|. ....|...+..+...|+++.|...+++++..+|. ....|.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~ 73 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-----SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR---SAEAWY 73 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-----chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC---chHHHH
Confidence 4577788766 889999999999999987654 4667888898899999999999999999999887 678899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 007407 506 ADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQA 568 (605)
Q Consensus 506 ~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~ 568 (605)
..+..+...|++++|..+|.+++...|.+..+|..++.++...|++++|...|++++..+|++
T Consensus 74 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 74 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999998863
No 116
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.31 E-value=1.2e-09 Score=129.04 Aligned_cols=214 Identities=14% Similarity=0.067 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHhCCCc-H--HHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh----hcHHHHHHHHHHHHHh
Q 007407 349 ANKIRALRMALDEIPDS-V--RLWKALVEISSEEEARILLHRAVECCPLDVELWLALVRL----ETYGVARSVLNKARKK 421 (605)
Q Consensus 349 ~~a~~vl~kAle~~P~~-~--~lw~~l~~le~~e~A~~~l~rAl~~~P~~~~lw~aLa~l----e~~e~A~~vL~~al~~ 421 (605)
..+.+.|..|....|++ . .+-..+.++++.++ . +..+ ..| +..-|..++.. +.|+.|...|.++
T Consensus 1151 EEAIeyL~mArk~~~e~~Idt~LafaYAKl~rlee-l---e~fI-~~~-n~ad~~~iGd~le~eg~YeeA~~~Y~kA--- 1221 (1630)
T 1xi4_A 1151 EELVKYLQMARKKARESYVETELIFALAKTNRLAE-L---EEFI-NGP-NNAHIQQVGDRCYDEKMYDAAKLLYNNV--- 1221 (1630)
T ss_pred HHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHH-H---HHHH-hCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhh---
Confidence 34555666666555442 2 23334455555443 2 2222 123 33444445432 3677777777775
Q ss_pred CCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhh
Q 007407 422 LPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDK 500 (605)
Q Consensus 422 ~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~ 500 (605)
..|..++... ..|+++.|+..+.+|. +...|...+..|...|.+..|+..... +..+|+
T Consensus 1222 -----~ny~rLA~tLvkLge~q~AIEaarKA~----------n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~~d---- 1281 (1630)
T 1xi4_A 1222 -----SNFGRLASTLVHLGEYQAAVDGARKAN----------STRTWKEVCFACVDGKEFRLAQMCGLH-IVVHAD---- 1281 (1630)
T ss_pred -----hHHHHHHHHHHHhCCHHHHHHHHHHhC----------CHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcCHH----
Confidence 3577777655 7777777777777762 345677777777777777776665543 332322
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCC-----CCHHHHH
Q 007407 501 KRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYG--CRESLIALLRKAVTYCP-----QAEVLWL 573 (605)
Q Consensus 501 ~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g--~~e~A~~~lekAl~~~P-----~~~~l~l 573 (605)
.+...+..|...|.+++|+.+|+.+|.++|.+..+|..++.++.+.. +..++.++|...+.+.| ....+|.
T Consensus 1282 --eLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~ 1359 (1630)
T 1xi4_A 1282 --ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWA 1359 (1630)
T ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHH
Confidence 23355666777777777777777777777777777777777776653 45566667766665544 5566777
Q ss_pred HHHHHHHHcCChHHHHHHHH
Q 007407 574 MGAKEKWLAGDVPATRDILQ 593 (605)
Q Consensus 574 ~~a~~~~~~gd~~~Ar~il~ 593 (605)
.+.-+|.+.|+++.|....-
T Consensus 1360 elv~LY~~~~e~dnA~~tm~ 1379 (1630)
T 1xi4_A 1360 ELVFLYDKYEEYDNAIITMM 1379 (1630)
T ss_pred HHHHHHHhcccHHHHHHHHH
Confidence 77777777777777774443
No 117
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.31 E-value=5.9e-11 Score=109.07 Aligned_cols=105 Identities=6% Similarity=-0.088 Sum_probs=100.9
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 007407 462 IDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKA 541 (605)
Q Consensus 462 ~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~l 541 (605)
.+...|...|..+...|++++|...|++++..+|. +..+|+.++..+...|++++|+..|+++++++|+++.+|+.+
T Consensus 34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~---~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l 110 (151)
T 3gyz_A 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY---NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT 110 (151)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 36788999999999999999999999999999998 899999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 007407 542 AQLEKSYGCRESLIALLRKAVTYCPQAE 569 (605)
Q Consensus 542 a~l~~~~g~~e~A~~~lekAl~~~P~~~ 569 (605)
|.++...|++++|+..|++|++.+|+++
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999999865
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.31 E-value=4.3e-11 Score=114.35 Aligned_cols=131 Identities=9% Similarity=-0.067 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 007407 466 TWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLE 545 (605)
Q Consensus 466 ~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~ 545 (605)
.+...|..+...|+++.|...|++++ .| +..+|+.++..+...|++++|+..|.+++..+|++..+|..+|.++
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--DP----HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--SC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--CC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 34566777778888888888888875 32 4568888888888889999999999999988898888899999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCC
Q 007407 546 KSYGCRESLIALLRKAVTYCPQAE----------------VLWLMGAKEKWLAGDVPATRDILQEAYAAIPNS 602 (605)
Q Consensus 546 ~~~g~~e~A~~~lekAl~~~P~~~----------------~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~ 602 (605)
...|++++|+..|++++..+|++. .+|..+|.++...|++++|...|+++++.+|++
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 889999999999999998887766 888888888888899999999999999888864
No 119
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.31 E-value=9.3e-12 Score=129.62 Aligned_cols=167 Identities=9% Similarity=-0.034 Sum_probs=135.9
Q ss_pred hhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHH
Q 007407 405 LETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTC 483 (605)
Q Consensus 405 le~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A 483 (605)
+..++.|...+++++...|....+|..+|.+. ..|++++|...|++++...|...... .+
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~-----------------~~-- 186 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFS-----------------NE-- 186 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCC-----------------SH--
T ss_pred EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCC-----------------hH--
Confidence 34667788888888888888888899998766 88999999999999998887643100 00
Q ss_pred HHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007407 484 VAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVT 563 (605)
Q Consensus 484 ~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~ 563 (605)
......+ ....+|+.++.++...|++++|+..|+++++++|++..+|+.+|.++...|++++|+..|++|++
T Consensus 187 -----~~~~~~~---~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 258 (336)
T 1p5q_A 187 -----EAQKAQA---LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 258 (336)
T ss_dssp -----HHHHHHH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----HHHHHHH---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0111111 15677888999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHH-HHHHHHHHHH
Q 007407 564 YCPQAEVLWLMGAKEKWLAGDVPAT-RDILQEAYAA 598 (605)
Q Consensus 564 ~~P~~~~l~l~~a~~~~~~gd~~~A-r~il~kAl~~ 598 (605)
.+|++..+|..++.++...|++++| +..|.+.+..
T Consensus 259 l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 259 LYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999889999888 6677777754
No 120
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.30 E-value=1.4e-11 Score=112.51 Aligned_cols=121 Identities=10% Similarity=-0.062 Sum_probs=108.4
Q ss_pred HHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007407 446 KIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFS 525 (605)
Q Consensus 446 ~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~ 525 (605)
..|++++...|. +...|...|..+...|++++|...|++++..+|. +..+|+.++..+...|++++|+..|+
T Consensus 8 ~~~~~al~~~p~-----~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~ 79 (148)
T 2vgx_A 8 GTIAMLNEISSD-----TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY---DSRFFLGLGACRQAMGQYDLAIHSYS 79 (148)
T ss_dssp CSHHHHTTCCHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhHHHHHcCCHh-----hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc---cHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 356666665543 5678899999999999999999999999999998 88999999999999999999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 007407 526 PACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLM 574 (605)
Q Consensus 526 ~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~ 574 (605)
+++..+|+++.+|+.+|.++...|++++|+..|++++..+|+++.....
T Consensus 80 ~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 128 (148)
T 2vgx_A 80 YGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXEL 128 (148)
T ss_dssp HHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHH
Confidence 9999999999999999999999999999999999999999987765433
No 121
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.29 E-value=2.4e-11 Score=119.90 Aligned_cols=164 Identities=13% Similarity=0.024 Sum_probs=137.8
Q ss_pred HcCCHHHHHHHHHHHHHHhccC---cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCchhhHHHHHHHH
Q 007407 437 ANGNTSMVGKIIERGIRALQGE---EVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIG-----VDEEDKKRTWVADV 508 (605)
Q Consensus 437 ~~g~~~~a~~i~~~al~~~p~~---~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~-----p~~~~~~~~~~~~a 508 (605)
..|++++|..+|+++++..... ..+.....|...|..+...|+++.|...+++++... ++.+....+|..++
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 4567788888888888876432 113356788889999999999999999999998873 33345778899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHH
Q 007407 509 EECKKRGSIETARAIFSPACTV--------FLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTY--------CPQAEVLW 572 (605)
Q Consensus 509 ~~~~~~g~~~~A~~i~~~al~~--------~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~--------~P~~~~l~ 572 (605)
..+...|++++|...|.+++.. .|....+|..+|.++...|++++|..+|++++.. .|....++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999999988 4677889999999999999999999999999998 56667788
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCC
Q 007407 573 LMGAKEKWLAGDVPATRDILQEAYAAIP 600 (605)
Q Consensus 573 l~~a~~~~~~gd~~~Ar~il~kAl~~~P 600 (605)
..+|.++...|++++|..+|.++++..|
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~ 200 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAH 200 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998743
No 122
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.28 E-value=1.4e-10 Score=100.39 Aligned_cols=120 Identities=12% Similarity=0.046 Sum_probs=109.4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 007407 463 DRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAA 542 (605)
Q Consensus 463 ~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la 542 (605)
....|...|..+...|+++.|...+++++...|. +..+|...+..+...|++++|+.+|.+++...|++..+|..+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 87 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA---NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHH
Confidence 4567888888899999999999999999999887 7788999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q 007407 543 QLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDV 585 (605)
Q Consensus 543 ~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~ 585 (605)
.++...|++++|...|++++..+|+++.+|..++.++...|++
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999988887765
No 123
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.28 E-value=1.1e-10 Score=102.15 Aligned_cols=115 Identities=15% Similarity=-0.027 Sum_probs=107.9
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 007407 463 DRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAA 542 (605)
Q Consensus 463 ~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la 542 (605)
....|...|..+...|++++|...|++++..+|. +..+|..++..+...|++++|+..|+++++.+|++..+|+.+|
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE---DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKA 79 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 3567889999999999999999999999999998 7899999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHH
Q 007407 543 QLEKSYGCRESLIALLRKAVTYC------PQAEVLWLMGAKEKW 580 (605)
Q Consensus 543 ~l~~~~g~~e~A~~~lekAl~~~------P~~~~l~l~~a~~~~ 580 (605)
.++...|++++|+..|++++..+ |++..++..++.+..
T Consensus 80 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 99999999999999999999999 988888888877654
No 124
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.27 E-value=4.1e-11 Score=105.98 Aligned_cols=102 Identities=14% Similarity=-0.026 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007407 500 KKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEK 579 (605)
Q Consensus 500 ~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~ 579 (605)
....|+..+..+...|++++|..+|.+++..+|++..+|..+|.++...|++++|+..|++++..+|+++.+|..+|.++
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 45556666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHcCChHHHHHHHHHHHHHCCC
Q 007407 580 WLAGDVPATRDILQEAYAAIPN 601 (605)
Q Consensus 580 ~~~gd~~~Ar~il~kAl~~~P~ 601 (605)
...|++++|...|.++++.+|+
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHChh
Confidence 6666666666666666666665
No 125
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.27 E-value=2e-11 Score=114.08 Aligned_cols=135 Identities=11% Similarity=0.050 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 007407 465 DTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQL 544 (605)
Q Consensus 465 ~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l 544 (605)
+.++..|..+...|++++|...|++++..+|+ +..+|+.++.++...|++++|+..|++++...| ++.++..++.+
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~ 82 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQS---RGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKL 82 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHT---SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHH
Confidence 45778888999999999999999999999988 889999999999999999999999999999999 88777766655
Q ss_pred HH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCC
Q 007407 545 EK-SYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSE 603 (605)
Q Consensus 545 ~~-~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~ 603 (605)
.. ..+....|+..|++++..+|+++.+|+.+|.++...|++++|...|.++++.+|+..
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 142 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQ 142 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTT
T ss_pred HHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccC
Confidence 43 223334579999999999999999999999999999999999999999999999753
No 126
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.27 E-value=2e-11 Score=110.02 Aligned_cols=113 Identities=12% Similarity=-0.004 Sum_probs=103.7
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 007407 463 DRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAA 542 (605)
Q Consensus 463 ~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la 542 (605)
+...|...|..+...|++++|...|++++..+|. +..+|+.++.++...|++++|+..|++++..+|+++.+|+.+|
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 93 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY---DARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAA 93 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 5678888999999999999999999999999998 8899999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 007407 543 QLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKE 578 (605)
Q Consensus 543 ~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~ 578 (605)
.++...|++++|+..|++++..+|+++..+....++
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 999999999999999999999999887665554443
No 127
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.26 E-value=3.4e-10 Score=115.81 Aligned_cols=204 Identities=14% Similarity=0.083 Sum_probs=132.4
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHH-hhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHH
Q 007407 377 SEEEARILLHRAVECCPLDVELWLALVR-LETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRA 454 (605)
Q Consensus 377 ~~e~A~~~l~rAl~~~P~~~~lw~aLa~-le~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~ 454 (605)
++++|..++++|.+..+.+. .. -.+++.|...|+++ +.+. ..|++++|...|.+++..
T Consensus 6 ~~~eA~~~~~~a~k~~~~~~------~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~ 65 (307)
T 2ifu_A 6 KISEAHEHIAKAEKYLKTSF------MKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAYLQEAEA 65 (307)
T ss_dssp HHHHHHHHHHHHHHHHCCCS------SSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHccccc------cCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHH
Confidence 45667777777777666431 11 14566777666665 2334 567777777777777777
Q ss_pred hccCccc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ch-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007407 455 LQGEEVV-IDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVD--EE-DKKRTWVADVEECKKRGSIETARAIFSPACTV 530 (605)
Q Consensus 455 ~p~~~~~-~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~--~~-~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~ 530 (605)
.+..+.. .....|...+..+...|+++.|...|++++.+.+. ++ ....+|...+.++.. |++++|+..|++++.+
T Consensus 66 ~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~ 144 (307)
T 2ifu_A 66 HANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAV 144 (307)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Confidence 6554321 12346666777777777777777777777766332 11 124566677777766 7777777777777777
Q ss_pred cCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007407 531 FLTK------KNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQA------EVLWLMGAKEKWLAGDVPATRDILQEAYAA 598 (605)
Q Consensus 531 ~P~~------~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~------~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~ 598 (605)
+|.. ..+|..+|.++...|++++|+..|++++..+|++ ...++..+.++...|++++|...|++++ .
T Consensus 145 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~ 223 (307)
T 2ifu_A 145 FENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S 223 (307)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T
T ss_pred HHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C
Confidence 6543 4567777777777777777777777777765433 2355666666666777777777777777 7
Q ss_pred CCCC
Q 007407 599 IPNS 602 (605)
Q Consensus 599 ~P~~ 602 (605)
+|+.
T Consensus 224 ~p~~ 227 (307)
T 2ifu_A 224 IPGF 227 (307)
T ss_dssp STTS
T ss_pred CCCC
Confidence 7754
No 128
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.26 E-value=1e-10 Score=102.02 Aligned_cols=120 Identities=8% Similarity=-0.112 Sum_probs=101.4
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 007407 462 IDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKA 541 (605)
Q Consensus 462 ~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~l 541 (605)
.....|...|..+...|+++.|...+++++..+|. +..+|..++..+...|++++|+.+|+++++.+|++..+|..+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 90 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK---DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 90 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT---CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 46677888888888888888888888888888877 677888888888888888888888888888888888888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 007407 542 AQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGD 584 (605)
Q Consensus 542 a~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd 584 (605)
|.++...|++++|+..|++++..+|.+..+|..++.++...|+
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888888888888888888888888888888888888776553
No 129
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.25 E-value=1.4e-10 Score=98.53 Aligned_cols=110 Identities=8% Similarity=-0.019 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 007407 465 DTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQL 544 (605)
Q Consensus 465 ~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l 544 (605)
..|...|..+...|+++.|...+++++..+|. +..+|...+..+...|++++|...|++++..+|++..+|..+|.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPH---NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34444555555555555555555555555444 444455555555555555555555555555555555555555555
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 007407 545 EKSYGCRESLIALLRKAVTYCPQAEVLWLMGAK 577 (605)
Q Consensus 545 ~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~ 577 (605)
+...|++++|...|++++..+|+++.+|..++.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 114 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 114 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 555555555555555555555555555544444
No 130
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.24 E-value=3.5e-10 Score=109.36 Aligned_cols=173 Identities=9% Similarity=-0.031 Sum_probs=108.0
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcC----CHHHHHH
Q 007407 411 ARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAG----SVVTCVA 485 (605)
Q Consensus 411 A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g----~~~~A~~ 485 (605)
|...|+++.+. .++.+++.++.+. ..+++++|...|+++++.. +...+..++..+.. + ++++|..
T Consensus 5 A~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g-------~~~a~~~lg~~y~~-~g~~~~~~~A~~ 74 (212)
T 3rjv_A 5 PGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG-------DGDALALLAQLKIR-NPQQADYPQARQ 74 (212)
T ss_dssp TTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-------CHHHHHHHHHHTTS-STTSCCHHHHHH
T ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHc-CCCCCCHHHHHH
Confidence 44555555543 5566666666555 5666666666666665531 34455566655555 4 5666666
Q ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHH----cCCHHHHH
Q 007407 486 IITNTIEIGVDEEDKKRTWVADVEECKK----RGSIETARAIFSPACTVFL--TKKNIWLKAAQLEKS----YGCRESLI 555 (605)
Q Consensus 486 i~~~al~~~p~~~~~~~~~~~~a~~~~~----~g~~~~A~~i~~~al~~~P--~~~~~w~~la~l~~~----~g~~e~A~ 555 (605)
.|++++..+ +...++.++.++.. .+++++|+..|+++++..| +.+.+++.+|.++.. .+++++|+
T Consensus 75 ~~~~A~~~g-----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~ 149 (212)
T 3rjv_A 75 LAEKAVEAG-----SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKAS 149 (212)
T ss_dssp HHHHHHHTT-----CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHH
T ss_pred HHHHHHHCC-----CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 666665532 45566666666665 5667777777777776665 346677777777766 56677777
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHc-C-----ChHHHHHHHHHHHHHC
Q 007407 556 ALLRKAVTYCPQAEVLWLMGAKEKWLA-G-----DVPATRDILQEAYAAI 599 (605)
Q Consensus 556 ~~lekAl~~~P~~~~l~l~~a~~~~~~-g-----d~~~Ar~il~kAl~~~ 599 (605)
..|++|+.. |.++..+..+|.++... | |+++|...|++|.+..
T Consensus 150 ~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 150 EYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 777777766 44555666667666652 3 6777777777776653
No 131
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.24 E-value=1.5e-10 Score=107.63 Aligned_cols=147 Identities=10% Similarity=0.033 Sum_probs=113.4
Q ss_pred HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH-HHHcC
Q 007407 437 ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEE-CKKRG 515 (605)
Q Consensus 437 ~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~-~~~~g 515 (605)
..|++++|...|++++...|. +...|...|..+...|+++.|...|++++..+|. +..+|..++.+ +...|
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~l~~~~~ 93 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQ-----NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE---NAELYAALATVLYYQAS 93 (177)
T ss_dssp -----CCCCHHHHHHHHHCCS-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTT
T ss_pred hccCHHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHhcC
Confidence 345667777788888877664 4567888888888888888888888888888887 67788888888 77888
Q ss_pred CH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 007407 516 SI--ETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQ 593 (605)
Q Consensus 516 ~~--~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~ 593 (605)
++ ++|+.+|+++++.+|++..+|+.+|.++...|++++|...|++++..+|+++..+..... +..|++...
T Consensus 94 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~-------i~~~~~~~~ 166 (177)
T 2e2e_A 94 QHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVES-------INMAKLLQR 166 (177)
T ss_dssp TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHH-------HHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHH-------HHHHHHhcC
Confidence 88 999999999999999999999999999999999999999999999999987655544332 444555555
Q ss_pred HHHHH
Q 007407 594 EAYAA 598 (605)
Q Consensus 594 kAl~~ 598 (605)
.....
T Consensus 167 ~~~~~ 171 (177)
T 2e2e_A 167 RSDLE 171 (177)
T ss_dssp HHHHH
T ss_pred CCCCC
Confidence 44443
No 132
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.24 E-value=4.8e-11 Score=100.70 Aligned_cols=104 Identities=10% Similarity=0.068 Sum_probs=100.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHH
Q 007407 500 KKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQ--AEVLWLMGAK 577 (605)
Q Consensus 500 ~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~--~~~l~l~~a~ 577 (605)
+...|+..+..+...|++++|...|+++++.+|.+..+|..+|.++...|++++|+..|++++..+|+ +..+|..+|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 66788899999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHHc-CChHHHHHHHHHHHHHCCCCC
Q 007407 578 EKWLA-GDVPATRDILQEAYAAIPNSE 603 (605)
Q Consensus 578 ~~~~~-gd~~~Ar~il~kAl~~~P~~~ 603 (605)
++... |++++|.+.|.+++..+|+++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 99999 999999999999999999875
No 133
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.23 E-value=1.3e-10 Score=101.33 Aligned_cols=105 Identities=12% Similarity=0.024 Sum_probs=101.5
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 007407 499 DKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKE 578 (605)
Q Consensus 499 ~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~ 578 (605)
.....|+..+..+...|++++|..+|++++..+|++..+|..+|.++...|++++|+..|++++..+|+++.+|..+|.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 37888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHHHCCCCC
Q 007407 579 KWLAGDVPATRDILQEAYAAIPNSE 603 (605)
Q Consensus 579 ~~~~gd~~~Ar~il~kAl~~~P~~~ 603 (605)
+...|++++|..+|.++++.+|++.
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~ 118 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCK 118 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGT
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCch
Confidence 9999999999999999999999875
No 134
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.22 E-value=1.5e-10 Score=116.75 Aligned_cols=135 Identities=10% Similarity=-0.074 Sum_probs=108.3
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-C-HHHHHH
Q 007407 463 DRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLT-K-KNIWLK 540 (605)
Q Consensus 463 ~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~-~-~~~w~~ 540 (605)
..++++.+|..+...|.+++|.++|..++..+|. .. .++..+.++...+++++|+..|+.++...+. . ..+++.
T Consensus 101 r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~---~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~ 176 (282)
T 4f3v_A 101 PLAITMGFAACEAAQGNYADAMEALEAAPVAGSE---HL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVA 176 (282)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCH---HH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc---hH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHH
Confidence 3577888888888888899998888888777765 55 7777888888899999999999877654222 1 357888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCC
Q 007407 541 AAQLEKSYGCRESLIALLRKAVTYC--PQ-AEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPN 601 (605)
Q Consensus 541 la~l~~~~g~~e~A~~~lekAl~~~--P~-~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~ 601 (605)
+|.++...|++++|+..|++++... |. .+..++.+|.++.+.|+.++|+.+|++++..+|+
T Consensus 177 LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 177 HGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 8999999999999999999888543 54 4568888888888899999999999999988886
No 135
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.22 E-value=2.2e-11 Score=135.82 Aligned_cols=153 Identities=10% Similarity=0.042 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcC-CH
Q 007407 441 TSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAG--SVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRG-SI 517 (605)
Q Consensus 441 ~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g--~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g-~~ 517 (605)
++++...++++++..|+ +..+|...+-.+...| .++++.+.+.++++.+|. +..+|...+.++...| .+
T Consensus 89 ~~~eL~~~~~~l~~~pK-----~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~---N~~aW~~R~~~l~~l~~~~ 160 (567)
T 1dce_A 89 VKAELGFLESCLRVNPK-----SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER---NFHCWDYRRFVAAQAAVAP 160 (567)
T ss_dssp HHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTCCCH
T ss_pred HHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc---cccHHHHHHHHHHHcCCCh
Confidence 44455555555555544 3455555555555555 457788888888888887 8888988888888888 88
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 007407 518 ETARAIFSPACTVFLTKKNIWLKAAQLEKSY--------------GCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAG 583 (605)
Q Consensus 518 ~~A~~i~~~al~~~P~~~~~w~~la~l~~~~--------------g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~g 583 (605)
+++...+.++++.+|.+.++|...+.++... +.++++++.+++|+..+|+++.+|..++.++.+.+
T Consensus 161 ~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~ 240 (567)
T 1dce_A 161 AEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAE 240 (567)
T ss_dssp HHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCC
Confidence 9999999999999999999999999888774 45789999999999999999999999988887766
Q ss_pred ChHH------------HHHHHHHHHHHCCC
Q 007407 584 DVPA------------TRDILQEAYAAIPN 601 (605)
Q Consensus 584 d~~~------------Ar~il~kAl~~~P~ 601 (605)
.+++ |...|.+|++++|.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~ 270 (567)
T 1dce_A 241 PHDVLCCVHVSREEACLSVCFSRPLTVGSR 270 (567)
T ss_dssp CCSCEEEEEEETTTTEEEEEEEEEECTTBT
T ss_pred CccceeeeeeccCCceEEEEeccceecccc
Confidence 6544 33445666666654
No 136
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.21 E-value=1.6e-10 Score=102.33 Aligned_cols=103 Identities=9% Similarity=-0.019 Sum_probs=89.4
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHH
Q 007407 500 KKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQA-------EVLW 572 (605)
Q Consensus 500 ~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~-------~~l~ 572 (605)
....|..++..+...|++++|+..|.+|++++|++..+|..+|.++...|++++|+..|++|++.+|++ ..+|
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 455677888889999999999999999999999999999999999999999999999999999987754 2467
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCC
Q 007407 573 LMGAKEKWLAGDVPATRDILQEAYAAIPNS 602 (605)
Q Consensus 573 l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~ 602 (605)
..+|.++...|++++|...|.+|++.+|+.
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence 778888888999999999999999988863
No 137
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.21 E-value=4.1e-10 Score=97.37 Aligned_cols=105 Identities=11% Similarity=0.025 Sum_probs=101.0
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 007407 499 DKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKE 578 (605)
Q Consensus 499 ~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~ 578 (605)
.....|+..+..+...|++++|...|++++...|++..+|..+|.++...|++++|+..|++++...|+++.+|..+|.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHHHCCCCC
Q 007407 579 KWLAGDVPATRDILQEAYAAIPNSE 603 (605)
Q Consensus 579 ~~~~gd~~~Ar~il~kAl~~~P~~~ 603 (605)
+...|++++|..+|.++++.+|++.
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~ 114 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNE 114 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHHhCCHHHHHHHHHHHHhcCccch
Confidence 9999999999999999999999874
No 138
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.21 E-value=2.3e-10 Score=105.31 Aligned_cols=106 Identities=11% Similarity=0.081 Sum_probs=102.0
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 007407 499 DKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKE 578 (605)
Q Consensus 499 ~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~ 578 (605)
.....|+..+..+...|++++|+.+|+++++.+|++..+|..+|.++...|++++|+..|++++..+|+++.+|+.+|.+
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHHHCCCCCC
Q 007407 579 KWLAGDVPATRDILQEAYAAIPNSEE 604 (605)
Q Consensus 579 ~~~~gd~~~Ar~il~kAl~~~P~~~~ 604 (605)
+...|++++|...|.++++++|++..
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchH
Confidence 99999999999999999999999875
No 139
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.21 E-value=1.2e-10 Score=107.38 Aligned_cols=105 Identities=14% Similarity=0.054 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 007407 501 KRTWVADVEECKKRGSIETARAIFSPACTVFLT-------KKN-----IWLKAAQLEKSYGCRESLIALLRKAVTY---- 564 (605)
Q Consensus 501 ~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~-------~~~-----~w~~la~l~~~~g~~e~A~~~lekAl~~---- 564 (605)
...|+..+..+...|++++|+..|.+|++++|+ +.. +|..+|.++...|++++|+..|++||++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 345666777777778888888888888888777 444 8888888888888888888888888888
Q ss_pred ---CCCCHHHH----HHHHHHHHHcCChHHHHHHHHHHHHHCCCCCCC
Q 007407 565 ---CPQAEVLW----LMGAKEKWLAGDVPATRDILQEAYAAIPNSEEI 605 (605)
Q Consensus 565 ---~P~~~~l~----l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~~I 605 (605)
+|++...| +..|..+...|++++|...|++|++++|++..|
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 88888888 888888888888888888888888888877544
No 140
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.20 E-value=5.7e-10 Score=94.71 Aligned_cols=104 Identities=12% Similarity=0.020 Sum_probs=99.7
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007407 500 KKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEK 579 (605)
Q Consensus 500 ~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~ 579 (605)
....|+..+..+...|++++|...|++++..+|++..+|..+|.++...|++++|...|++++..+|+++.+|..+|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 56778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHHHCCCCC
Q 007407 580 WLAGDVPATRDILQEAYAAIPNSE 603 (605)
Q Consensus 580 ~~~gd~~~Ar~il~kAl~~~P~~~ 603 (605)
...|++++|...|.++++.+|+++
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~ 106 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNP 106 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCH
Confidence 999999999999999999999875
No 141
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.20 E-value=9e-10 Score=94.33 Aligned_cols=116 Identities=13% Similarity=0.182 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 007407 464 RDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQ 543 (605)
Q Consensus 464 ~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~ 543 (605)
...|...+..+...|+++.|...+++++...|. +..+|...+..+...|++++|..+|++++...|.+..+|..++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN---NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC---cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 456777777777788888888888888877776 56777777888888888888888888888888888888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 007407 544 LEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLA 582 (605)
Q Consensus 544 l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~ 582 (605)
++...|++++|..+|++++..+|+++.++..++.++...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 888888888888888888888888887777777766544
No 142
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.18 E-value=3.3e-10 Score=98.94 Aligned_cols=115 Identities=13% Similarity=0.028 Sum_probs=84.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHH
Q 007407 467 WMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTK---KNIWLKAAQ 543 (605)
Q Consensus 467 wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~---~~~w~~la~ 543 (605)
+...|..+...|+++.|...++.++..+|+++....+|+..+..+...|++++|+..|++++..+|++ ..+|+.+|.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 56667777777777888888888777777633333677777777777788888888888888777777 777777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 007407 544 LEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWL 581 (605)
Q Consensus 544 l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~ 581 (605)
++...|++++|+..|++++..+|+++..+.....+...
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l 122 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI 122 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 77777888888888888887777777666655554433
No 143
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.18 E-value=4.4e-09 Score=109.38 Aligned_cols=234 Identities=13% Similarity=0.049 Sum_probs=177.2
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHhCCCcHHHHHH----HHHhC-CHHHHHHHHHHHHHhCCCCHHHHHH----HHHh-h
Q 007407 337 VVAKGVRQIPKSANKIRALRMALDEIPDSVRLWKA----LVEIS-SEEEARILLHRAVECCPLDVELWLA----LVRL-E 406 (605)
Q Consensus 337 ~l~~al~~~P~s~~a~~vl~kAle~~P~~~~lw~~----l~~le-~~e~A~~~l~rAl~~~P~~~~lw~a----La~l-e 406 (605)
.+...+.....+..+...+.++|..+|++..+|.. +..++ .+++++..+..++..+|++..+|.. +-.+ .
T Consensus 59 ~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~ 138 (349)
T 3q7a_A 59 YFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISP 138 (349)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcC
Confidence 33334444445566777888888999999988863 33456 5899999999999999999999974 3344 5
Q ss_pred -cHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHH--------HHHHHHHHHHHHhccCcccccHHHHHHHHHHHHH
Q 007407 407 -TYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTS--------MVGKIIERGIRALQGEEVVIDRDTWMKEAEVADR 476 (605)
Q Consensus 407 -~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~--------~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~ 476 (605)
.++++...++++++..|.+..+|...+-+- ..|..+ +....++++++..|. +...|...+.....
T Consensus 139 ~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-----N~SAW~~R~~lL~~ 213 (349)
T 3q7a_A 139 QDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-----NNSAWGWRWYLRVS 213 (349)
T ss_dssp SCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHh
Confidence 778999999999999999999999877433 444333 788899999998876 57889988888777
Q ss_pred cCC-------HHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHH
Q 007407 477 AGS-------VVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSI--------------------ETARAIFSPACT 529 (605)
Q Consensus 477 ~g~-------~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~--------------------~~A~~i~~~al~ 529 (605)
.+. ++++.+.+.++|..+|. +..+|..+..++...|.. ......+...+.
T Consensus 214 l~~~~~~~~~~~eELe~~~~aI~~~P~---n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (349)
T 3q7a_A 214 RPGAETSSRSLQDELIYILKSIHLIPH---NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPS 290 (349)
T ss_dssp STTCCCCHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC
T ss_pred ccccccchHHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHh
Confidence 765 68899999999999998 889998877777776643 223333322222
Q ss_pred hc------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHH
Q 007407 530 VF------LTKKNIWLKAAQLEKSYGCRESLIALLRKAV-TYCPQAEVLWLMGAKE 578 (605)
Q Consensus 530 ~~------P~~~~~w~~la~l~~~~g~~e~A~~~lekAl-~~~P~~~~l~l~~a~~ 578 (605)
.. +....++..++.++...|+.++|.++|+... +.+|-....|...+..
T Consensus 291 ~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~ 346 (349)
T 3q7a_A 291 DPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRRE 346 (349)
T ss_dssp -CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred cccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHh
Confidence 22 4678899999999999999999999999987 5578778888776553
No 144
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.17 E-value=8.8e-10 Score=94.40 Aligned_cols=104 Identities=17% Similarity=0.246 Sum_probs=100.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007407 500 KKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEK 579 (605)
Q Consensus 500 ~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~ 579 (605)
....|+..+..+...|++++|..+|.+++..+|++..+|..++.++...|++++|..+|++++...|.++.+|..+|.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHHHCCCCC
Q 007407 580 WLAGDVPATRDILQEAYAAIPNSE 603 (605)
Q Consensus 580 ~~~gd~~~Ar~il~kAl~~~P~~~ 603 (605)
...|++++|..+|.++++.+|+++
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~ 111 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNA 111 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcH
Confidence 999999999999999999999874
No 145
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=4.5e-10 Score=99.97 Aligned_cols=118 Identities=14% Similarity=0.050 Sum_probs=99.2
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 007407 462 IDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKA 541 (605)
Q Consensus 462 ~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~l 541 (605)
.....|...|..+...|+++.|...|++++..+|+++....+|+.++..+...|++++|+..|++++..+|++..+|+.+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 46778888888888888888888888888888887322377888888888888888888888888888888888888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007407 542 AQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEK 579 (605)
Q Consensus 542 a~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~ 579 (605)
|.++...|++++|...|++++..+|+++.+|..++.+.
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 88888888888888888888888888888888777764
No 146
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.16 E-value=2.6e-10 Score=104.71 Aligned_cols=119 Identities=8% Similarity=-0.062 Sum_probs=100.4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCC-------chhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007407 463 DRDTWMKEAEVADRAGSVVTCVAIITNTIEI--------GVD-------EEDKKRTWVADVEECKKRGSIETARAIFSPA 527 (605)
Q Consensus 463 ~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~--------~p~-------~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~a 527 (605)
....|...|..+...|++..|...|.+++.. .|. ++....+|..++..+...|++++|+..|.++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 5677888899999999999999999999987 222 1226778889999999999999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHH
Q 007407 528 CTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAE-VLWLMGAKEKWL 581 (605)
Q Consensus 528 l~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~-~l~l~~a~~~~~ 581 (605)
++++|++..+|+.+|.++...|++++|+..|++|+..+|+++ .++..++.+...
T Consensus 90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~ 144 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTER 144 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999887 667677666544
No 147
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.16 E-value=8.8e-11 Score=122.19 Aligned_cols=164 Identities=13% Similarity=0.040 Sum_probs=135.3
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh----hcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007407 375 ISSEEEARILLHRAVECCPLDVELWLALVRL----ETYGVARSVLNKARKKLPKERAIWIAAAKLEANGNTSMVGKIIER 450 (605)
Q Consensus 375 le~~e~A~~~l~rAl~~~P~~~~lw~aLa~l----e~~e~A~~vL~~al~~~p~~~~iwi~~a~Le~~g~~~~a~~i~~~ 450 (605)
+.+++.|+..|+++++..|.+...|..++.. ++++.|...|++++...|.+... ......
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~-----------~~~~~~----- 189 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSF-----------SNEEAQ----- 189 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCC-----------CSHHHH-----
T ss_pred EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccC-----------ChHHHH-----
Confidence 3456778888999999999999999877653 58999999999999999986321 000110
Q ss_pred HHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007407 451 GIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTV 530 (605)
Q Consensus 451 al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~ 530 (605)
...+ .....|..+|..+...|+++.|...|++++.++|. +..+|+.++..+...|++++|+..|++++++
T Consensus 190 --~~~~-----~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 190 --KAQA-----LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN---NEKGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp --HHHH-----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --HHHH-----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 0000 12457888899999999999999999999999988 8899999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHh
Q 007407 531 FLTKKNIWLKAAQLEKSYGCRESL-IALLRKAVTY 564 (605)
Q Consensus 531 ~P~~~~~w~~la~l~~~~g~~e~A-~~~lekAl~~ 564 (605)
+|++..+|..++.++...|+++++ ..+|++++..
T Consensus 260 ~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 260 YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888 6678887765
No 148
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.16 E-value=2.5e-10 Score=100.23 Aligned_cols=103 Identities=12% Similarity=0.013 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 007407 465 DTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQL 544 (605)
Q Consensus 465 ~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l 544 (605)
..|+..|..+...|++++|...+++++..+|+ +..+|+.++.++...|++++|+..|+++++++|++..+|..+|.+
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~ 94 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPE---REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 94 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45888899999999999999999999999998 899999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHH
Q 007407 545 EKSYGCRESLIALLRKAVTYCPQAEV 570 (605)
Q Consensus 545 ~~~~g~~e~A~~~lekAl~~~P~~~~ 570 (605)
+...|++++|+..|+++++.+|++..
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 95 HTNEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence 99999999999999999999997653
No 149
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.16 E-value=8.6e-10 Score=100.17 Aligned_cols=104 Identities=11% Similarity=0.042 Sum_probs=100.2
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007407 500 KKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEK 579 (605)
Q Consensus 500 ~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~ 579 (605)
....|...|..+...|++++|...|.+++..+|.+..+|..+|.++...|++++|+..|++++..+|.++.+|..+|.++
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 56678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHHHCCCCC
Q 007407 580 WLAGDVPATRDILQEAYAAIPNSE 603 (605)
Q Consensus 580 ~~~gd~~~Ar~il~kAl~~~P~~~ 603 (605)
...|++++|..+|.++++.+|++.
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~ 115 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDK 115 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999999874
No 150
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.15 E-value=2.5e-10 Score=115.20 Aligned_cols=193 Identities=17% Similarity=0.022 Sum_probs=151.2
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHH-----------HhhcHHHHHHHHHHHHHhCCCC--------------------
Q 007407 377 SEEEARILLHRAVECCPLDVELWLALV-----------RLETYGVARSVLNKARKKLPKE-------------------- 425 (605)
Q Consensus 377 ~~e~A~~~l~rAl~~~P~~~~lw~aLa-----------~le~~e~A~~vL~~al~~~p~~-------------------- 425 (605)
++..|+.+|.++++..|...++|+.++ ++..+.++...+.+++...|..
T Consensus 21 d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~ 100 (282)
T 4f3v_A 21 SEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTS 100 (282)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECSS
T ss_pred CHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccCC
Confidence 567788888888888888888888663 2334556666777777755431
Q ss_pred -HHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHH
Q 007407 426 -RAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRT 503 (605)
Q Consensus 426 -~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~ 503 (605)
.++++.++.+. ..|++++|..+|+.++...|. .. .+...+..+.+.+.+..|+..++.++... .......+
T Consensus 101 r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~-----~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 101 PLAITMGFAACEAAQGNYADAMEALEAAPVAGSE-----HL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCH-----HH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred HhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-----hH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 45677788766 899999999999887654432 34 66777888999999999999998776643 20112457
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhc--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 007407 504 WVADVEECKKRGSIETARAIFSPACTVF--LT-KKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAK 577 (605)
Q Consensus 504 ~~~~a~~~~~~g~~~~A~~i~~~al~~~--P~-~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~ 577 (605)
++.++..+...|++++|+..|++++.-. |. ...+++.+|.++...|+.++|..+|++++..+|+ +.++..+..
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 8889999999999999999999998543 66 6679999999999999999999999999999999 888777644
No 151
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.15 E-value=6.7e-10 Score=98.01 Aligned_cols=117 Identities=11% Similarity=-0.102 Sum_probs=107.4
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 007407 462 IDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKA 541 (605)
Q Consensus 462 ~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~l 541 (605)
.+...|...|..+...|+++.|...|+.++..+|. +..+|..++.++...|++++|+..|+++++.+|++..+|+.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL---VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 35778999999999999999999999999999988 788999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHH
Q 007407 542 AQLEKSYGCRESLIALLRKAVTYCPQ-----AEVLWLMGAKEKWL 581 (605)
Q Consensus 542 a~l~~~~g~~e~A~~~lekAl~~~P~-----~~~l~l~~a~~~~~ 581 (605)
|.++...|++++|+..|++++..+|+ +..++..+..+..+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~ 128 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 128 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999987 67777777665543
No 152
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=1.2e-09 Score=97.26 Aligned_cols=104 Identities=13% Similarity=-0.031 Sum_probs=98.5
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 007407 500 KKRTWVADVEECKKRGSIETARAIFSPACTVFLTK---KNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGA 576 (605)
Q Consensus 500 ~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~---~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a 576 (605)
....|+..+..+...|++++|..+|+++++.+|++ ..+|..+|.++...|++++|+..|++++..+|+++.+|+.+|
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 77889999999999999999999999999999997 899999999999999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCC
Q 007407 577 KEKWLAGDVPATRDILQEAYAAIPNSE 603 (605)
Q Consensus 577 ~~~~~~gd~~~Ar~il~kAl~~~P~~~ 603 (605)
.++...|++++|..+|.++++.+|++.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p~~~ 133 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLEPKNK 133 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 999999999999999999999999875
No 153
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.13 E-value=8.9e-10 Score=104.64 Aligned_cols=133 Identities=9% Similarity=-0.044 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchh-------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007407 464 RDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEED-------------KKRTWVADVEECKKRGSIETARAIFSPACTV 530 (605)
Q Consensus 464 ~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~-------------~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~ 530 (605)
...|...|..+...|+++.|...|++++...|.+++ ...+|..++.++...|++++|+..|.++++.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 456778888888899999999999999988776321 1378999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH-HHHHHHH
Q 007407 531 FLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATR-DILQEAY 596 (605)
Q Consensus 531 ~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar-~il~kAl 596 (605)
+|++..+|+.+|.++...|++++|+..|++++..+|+++.++..++.++...++..++. ..+.+.+
T Consensus 118 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 118 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999988877777766 4444444
No 154
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.12 E-value=3.3e-09 Score=92.42 Aligned_cols=101 Identities=16% Similarity=0.090 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHH
Q 007407 503 TWVADVEECKKRGSIETARAIFSPACTVFLTKK---NIWLKAAQLEKSYGCRESLIALLRKAVTYCPQA---EVLWLMGA 576 (605)
Q Consensus 503 ~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~---~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~---~~l~l~~a 576 (605)
.++..|..+...|++++|...|+++++.+|++. .+|+.+|.++...|++++|+..|++++..+|++ +.+++.+|
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 466778888999999999999999999999987 799999999999999999999999999999988 88899999
Q ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCC
Q 007407 577 KEKWLAGDVPATRDILQEAYAAIPNSE 603 (605)
Q Consensus 577 ~~~~~~gd~~~Ar~il~kAl~~~P~~~ 603 (605)
.++...|++++|...|+++++..|+++
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~ 110 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSD 110 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCh
Confidence 999999999999999999999999875
No 155
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.11 E-value=2.9e-10 Score=115.03 Aligned_cols=192 Identities=8% Similarity=-0.078 Sum_probs=151.9
Q ss_pred CCCHHHHHHHHH----hhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHH
Q 007407 393 PLDVELWLALVR----LETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTW 467 (605)
Q Consensus 393 P~~~~lw~aLa~----le~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~w 467 (605)
|.+...|..++. .+++++|...|+++++..|.++.+|..+|.+. ..|++++|...++++++..|. +...|
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~ 75 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-----SVKAH 75 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-----CHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-----CHHHH
Confidence 566777776654 35799999999999999999999999999877 999999999999999988765 56789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCchh--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 007407 468 MKEAEVADRAGSVVTCVAIITNTIEIGVDEED--KKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLE 545 (605)
Q Consensus 468 l~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~--~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~ 545 (605)
...|..+...|++++|...|++++..+|++.. ...+|.... ...+...........|.+..++..++.+.
T Consensus 76 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~i~~~l~~l~ 147 (281)
T 2c2l_A 76 FFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR--------IAKKKRWNSIEERRIHQESELHSYLTRLI 147 (281)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH--------HHHHHHHHHHHHTCCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH--------HHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999999999999999999999998876321 122232221 13334444444566788888888887776
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHC
Q 007407 546 KSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWL-AGDVPATRDILQEAYAAI 599 (605)
Q Consensus 546 ~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~-~gd~~~Ar~il~kAl~~~ 599 (605)
.|++++|++.|++|++..|++..+...++.++.. .+.+++|..+|.++.+..
T Consensus 148 --~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 148 --AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp --HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred --HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 6889999999999999999888887777776665 477899999999887643
No 156
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.10 E-value=1.2e-10 Score=121.26 Aligned_cols=157 Identities=10% Similarity=-0.031 Sum_probs=91.2
Q ss_pred CCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhH
Q 007407 423 PKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKK 501 (605)
Q Consensus 423 p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~ 501 (605)
+.....|...+... ..|++.+|...|++++...|. . .. +...|....+...+ ..
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~-----~-~~-------~~~~~~~~~~~~~l------------~~ 230 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGD-----D-FM-------FQLYGKYQDMALAV------------KN 230 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCH-----H-HH-------HTCCHHHHHHHHHH------------HT
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc-----c-hh-------hhhcccHHHHHHHH------------HH
Confidence 33477788888777 888999999999999987653 1 11 11112222221111 23
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-
Q 007407 502 RTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKW- 580 (605)
Q Consensus 502 ~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~- 580 (605)
.+|+.++.++...|++++|+..|.++++.+|++..+|+.+|.++...|++++|+..|++|+..+|+++.++..++.+..
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~ 310 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ 310 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 4788899999999999999999999999999999999999999999999999999999999999999999999998854
Q ss_pred HcCChHHHHHHHHHHHHHCCCCCC
Q 007407 581 LAGDVPATRDILQEAYAAIPNSEE 604 (605)
Q Consensus 581 ~~gd~~~Ar~il~kAl~~~P~~~~ 604 (605)
..+..++++.+|.+++...|+++.
T Consensus 311 ~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 311 EKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHhhCCCCCCCC
Confidence 478899999999999999998763
No 157
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.10 E-value=1e-09 Score=100.71 Aligned_cols=100 Identities=12% Similarity=-0.011 Sum_probs=73.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh------------------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 007407 504 WVADVEECKKRGSIETARAIFSPACTV------------------FLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYC 565 (605)
Q Consensus 504 ~~~~a~~~~~~g~~~~A~~i~~~al~~------------------~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~ 565 (605)
|...|..+...|++++|+..|.+++.. .|....+|..+|.++...|++++|+..+++|+..+
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 445566666777777777777777777 66777777777777777777777777777777777
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCC
Q 007407 566 PQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSE 603 (605)
Q Consensus 566 P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~ 603 (605)
|+++.+|+.+|.++...|++++|...|.+|++++|+++
T Consensus 94 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 94 ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 77777777777777777777777777777777777654
No 158
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.10 E-value=6.1e-11 Score=103.02 Aligned_cols=98 Identities=16% Similarity=0.188 Sum_probs=81.9
Q ss_pred cCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007407 477 AGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIA 556 (605)
Q Consensus 477 ~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~ 556 (605)
.|++++|...|++++..+++++++..+|+.++.++...|++++|+..|+++++.+|++..+|+.+|.++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 57788899999999988644455888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHH
Q 007407 557 LLRKAVTYCPQAEVLWLM 574 (605)
Q Consensus 557 ~lekAl~~~P~~~~l~l~ 574 (605)
.|++++...|+++.+...
T Consensus 83 ~~~~al~~~p~~~~~~~~ 100 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQSY 100 (117)
T ss_dssp HHHHHHHHHCCCHHHHHT
T ss_pred HHHHHHHhCCCcHHHHHH
Confidence 999999999988776543
No 159
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.09 E-value=2.5e-10 Score=108.54 Aligned_cols=104 Identities=14% Similarity=0.040 Sum_probs=99.4
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007407 500 KKRTWVADVEECKKRGSIETARAIFSPACTVFLTKK----------------NIWLKAAQLEKSYGCRESLIALLRKAVT 563 (605)
Q Consensus 500 ~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~----------------~~w~~la~l~~~~g~~e~A~~~lekAl~ 563 (605)
....|...+..+...|++++|...|.+++...|.+. .+|..+|.++...|++++|+..|++++.
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 566788899999999999999999999999999987 8999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCC
Q 007407 564 YCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSE 603 (605)
Q Consensus 564 ~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~ 603 (605)
.+|+++.+|+.+|.++...|++++|...|.++++++|++.
T Consensus 117 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 156 (198)
T 2fbn_A 117 IDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNL 156 (198)
T ss_dssp HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH
T ss_pred hCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH
Confidence 9999999999999999999999999999999999999875
No 160
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.09 E-value=5.6e-09 Score=105.65 Aligned_cols=172 Identities=8% Similarity=-0.049 Sum_probs=133.8
Q ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCccc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---hhhHH
Q 007407 428 IWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVV-IDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDE---EDKKR 502 (605)
Q Consensus 428 iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~-~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~---~~~~~ 502 (605)
.+...+... ..|++++|...+.++++..+..... .....+...+..+...|+++.|...+++++...+.. .....
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344455444 7888999999999888876542211 112223445667777889999999999999865432 11356
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH---HhcCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CH
Q 007407 503 TWVADVEECKKRGSIETARAIFSPAC---TVFLTKK----NIWLKAAQLEKSYGCRESLIALLRKAVTYCPQ------AE 569 (605)
Q Consensus 503 ~~~~~a~~~~~~g~~~~A~~i~~~al---~~~P~~~----~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~------~~ 569 (605)
+|...+..+...|++++|...|.+++ +..|++. .++..+|.++...|++++|+.+|++|+..+++ -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 78889999999999999999999999 5567643 68999999999999999999999999988642 16
Q ss_pred HHHHHHHHHHHHcCChHHH-HHHHHHHHHHC
Q 007407 570 VLWLMGAKEKWLAGDVPAT-RDILQEAYAAI 599 (605)
Q Consensus 570 ~l~l~~a~~~~~~gd~~~A-r~il~kAl~~~ 599 (605)
.++..+|.++...|++++| ...|.+|+.+.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 7889999999999999999 88899998754
No 161
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.09 E-value=7.4e-11 Score=125.80 Aligned_cols=280 Identities=13% Similarity=0.085 Sum_probs=142.6
Q ss_pred hhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcCchhHHHHHHHH
Q 007407 262 SELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLARPDEAKSVVAKG 341 (605)
Q Consensus 262 ~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~~~~Ak~~l~~a 341 (605)
...|++++|...++++ +++..|..+|..+...|+++.|...|.++ .+...|...++.... ..-+
T Consensus 14 ~~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~---~g~~--- 77 (449)
T 1b89_A 14 EHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANT---SGNW--- 77 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHh---CCCH---
Confidence 4778899999999888 44579999999999999999999999652 344455554443211 0011
Q ss_pred HhhCCCcHHHHHHHHHHHHhCCC---cHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH----hhcHHHHHHH
Q 007407 342 VRQIPKSANKIRALRMALDEIPD---SVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALVR----LETYGVARSV 414 (605)
Q Consensus 342 l~~~P~s~~a~~vl~kAle~~P~---~~~lw~~l~~le~~e~A~~~l~rAl~~~P~~~~lw~aLa~----le~~e~A~~v 414 (605)
..+.+.|+.+.+..|+ ...+-..+.++++.+++..+++. |+ ...|..++. .+.|++|+..
T Consensus 78 -------EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~-----pn-~~a~~~IGd~~~~~g~yeeA~~~ 144 (449)
T 1b89_A 78 -------EELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFING-----PN-NAHIQQVGDRCYDEKMYDAAKLL 144 (449)
T ss_dssp --------------------------------------CHHHHTTTTTC-----C-----------------CTTTHHHH
T ss_pred -------HHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcC-----Cc-HHHHHHHHHHHHHcCCHHHHHHH
Confidence 1223344444443322 12233455566677777766642 54 357776654 3579999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007407 415 LNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEI 493 (605)
Q Consensus 415 L~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~ 493 (605)
|.++ .-|..++... +.|+++.|+..+.++. +...|......|...|.+..|......+ ..
T Consensus 145 Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA~----------~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-~~ 205 (449)
T 1b89_A 145 YNNV--------SNFGRLASTLVHLGEYQAAVDGARKAN----------STRTWKEVCFACVDGKEFRLAQMCGLHI-VV 205 (449)
T ss_dssp HHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHHT----------CHHHHHHHHHHHHHTTCHHHHHHTTTTT-TT
T ss_pred HHHh--------hhHHHHHHHHHHhccHHHHHHHHHHcC----------CchhHHHHHHHHHHcCcHHHHHHHHHHH-Hh
Confidence 9977 3488899877 9999999999999981 4678999999999999999997655542 23
Q ss_pred CCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCC-----
Q 007407 494 GVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYG--CRESLIALLRKAVTYCP----- 566 (605)
Q Consensus 494 ~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g--~~e~A~~~lekAl~~~P----- 566 (605)
.|+ . ....+..|.+.|.+++|+.+|+.++..+|....+|..++.++.+.+ +..+.++.|...+.+.|
T Consensus 206 ~ad---~---l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~ 279 (449)
T 1b89_A 206 HAD---E---LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAA 279 (449)
T ss_dssp CHH---H---HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHH
T ss_pred CHh---h---HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 333 2 3356788999999999999999999999999999999999998764 56677777776666655
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 007407 567 QAEVLWLMGAKEKWLAGDVPATRDILQEA 595 (605)
Q Consensus 567 ~~~~l~l~~a~~~~~~gd~~~Ar~il~kA 595 (605)
....+|..+.-++.+.++++.|....-..
T Consensus 280 ~~~~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 280 EQAHLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp HTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 67789999999999999999998766543
No 162
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.09 E-value=1.4e-09 Score=94.18 Aligned_cols=112 Identities=8% Similarity=-0.028 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-------HH
Q 007407 464 RDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTK-------KN 536 (605)
Q Consensus 464 ~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~-------~~ 536 (605)
...|...|..+...|+++.|...+++++..+|. +..+|+..+..+...|++++|..+|.+++...|++ ..
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPT---NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc---cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence 345666666666666666666666666666655 55566666666666666666666666666666555 66
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007407 537 IWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEK 579 (605)
Q Consensus 537 ~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~ 579 (605)
+|..+|.++...|++++|...|++++...| ++..+..++.+.
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 666666666666666666666666666666 455555555544
No 163
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.07 E-value=3.9e-09 Score=100.53 Aligned_cols=130 Identities=6% Similarity=-0.092 Sum_probs=114.0
Q ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHH
Q 007407 429 WIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVAD 507 (605)
Q Consensus 429 wi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~ 507 (605)
++..|... ..|++++|...|++++. .....|...|..+...|+++.|...|++++..+|. +..+|+.+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~--------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~l 77 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQD--------PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH---LAVAYFQR 77 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSS--------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcC--------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---chHHHHHH
Confidence 45566655 88999999999988851 14578999999999999999999999999999887 78889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 007407 508 VEECKKRGSIETARAIFSPACTVFLTKK----------------NIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAE 569 (605)
Q Consensus 508 a~~~~~~g~~~~A~~i~~~al~~~P~~~----------------~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~ 569 (605)
+..+...|++++|+..|+++++..|.+. .+|+.+|.++...|++++|...|++++..+|++.
T Consensus 78 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 78 GMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred HHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 9999999999999999999999888766 9999999999999999999999999999999763
No 164
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.07 E-value=2.5e-10 Score=123.93 Aligned_cols=159 Identities=11% Similarity=-0.044 Sum_probs=123.2
Q ss_pred hhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHH
Q 007407 405 LETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTC 483 (605)
Q Consensus 405 le~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A 483 (605)
+..++.|...++.++...|.....|...|... ..|++..|...|++|++..|..... .. +..
T Consensus 247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~-~~----------------~~~ 309 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGL-SE----------------KES 309 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSC-CH----------------HHH
T ss_pred hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccC-Ch----------------HHH
Confidence 34677788888888888888888899999766 8999999999999999988764210 00 000
Q ss_pred HHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007407 484 VAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVT 563 (605)
Q Consensus 484 ~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~ 563 (605)
. ... +....+|+.++.++...|++++|+..|.++++++|++..+|+.+|.++...|++++|+..|++|++
T Consensus 310 ~-------~~~---~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~ 379 (457)
T 1kt0_A 310 K-------ASE---SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379 (457)
T ss_dssp H-------HHH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred H-------HHH---HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 0 111 115667888888899999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHH
Q 007407 564 YCPQAEVLWLMGAKEKWLAGDVPATRD 590 (605)
Q Consensus 564 ~~P~~~~l~l~~a~~~~~~gd~~~Ar~ 590 (605)
++|++..+|..++.++...+++++|..
T Consensus 380 l~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 380 VNPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp TC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888888888888888887776654
No 165
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.06 E-value=3.7e-09 Score=107.01 Aligned_cols=163 Identities=9% Similarity=-0.008 Sum_probs=124.7
Q ss_pred HcCCHHHHHHHHHHHHHHhccCcccccHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCchh---hHHHHHHHHHHHH
Q 007407 437 ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMK-EAEVADRAGSVVTCVAIITNTIEIGVDEED---KKRTWVADVEECK 512 (605)
Q Consensus 437 ~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~-~A~~~e~~g~~~~A~~i~~~al~~~p~~~~---~~~~~~~~a~~~~ 512 (605)
..|++++|..++++++...+..........|.. .+..+...|+++.|...+++++...+...+ ...++...+..+.
T Consensus 87 ~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~ 166 (293)
T 3u3w_A 87 KQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA 166 (293)
T ss_dssp HTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence 678888888888888775443211111122333 566666777889999999999986544222 2456888899999
Q ss_pred HcCCHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHH
Q 007407 513 KRGSIETARAIFSPACTVF-------LTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQA------EVLWLMGAKEK 579 (605)
Q Consensus 513 ~~g~~~~A~~i~~~al~~~-------P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~------~~l~l~~a~~~ 579 (605)
..|++++|..+|+++++.. |....+|..+|.++...|++++|+..+++|+..+++. ..+|..+|.++
T Consensus 167 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~ 246 (293)
T 3u3w_A 167 ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECL 246 (293)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 9999999999999999532 2235688999999999999999999999999987533 77899999999
Q ss_pred HHcC-ChHHHHHHHHHHHHHC
Q 007407 580 WLAG-DVPATRDILQEAYAAI 599 (605)
Q Consensus 580 ~~~g-d~~~Ar~il~kAl~~~ 599 (605)
...| ++++|...|++|+.+.
T Consensus 247 ~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 247 RKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHTTCCHHHHHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHH
Confidence 9999 4699999999999764
No 166
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.06 E-value=1e-08 Score=98.88 Aligned_cols=183 Identities=11% Similarity=-0.006 Sum_probs=148.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHh----hcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcC----CHHHHHHHHH
Q 007407 379 EEARILLHRAVECCPLDVELWLALVRL----ETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANG----NTSMVGKIIE 449 (605)
Q Consensus 379 e~A~~~l~rAl~~~P~~~~lw~aLa~l----e~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g----~~~~a~~i~~ 449 (605)
.+|+..|+++.+. .++.++..|+.+ .+++.|...|+++.+. .++.+++.++.+. . + +.++|..+|+
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 3577888888875 778888877765 3788999999999874 6788999999877 5 6 8999999999
Q ss_pred HHHHHhccCcccccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH----cCCHHHHH
Q 007407 450 RGIRALQGEEVVIDRDTWMKEAEVADR----AGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKK----RGSIETAR 521 (605)
Q Consensus 450 ~al~~~p~~~~~~~~~~wl~~A~~~e~----~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~----~g~~~~A~ 521 (605)
++++. .....+..++..+.. .+++.+|...|++++..++. ......++.++.++.. .+++++|+
T Consensus 78 ~A~~~-------g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~-~~~~~a~~~Lg~~y~~g~g~~~d~~~A~ 149 (212)
T 3rjv_A 78 KAVEA-------GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSES-DAAVDAQMLLGLIYASGVHGPEDDVKAS 149 (212)
T ss_dssp HHHHT-------TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTS-HHHHHHHHHHHHHHHHTSSSSCCHHHHH
T ss_pred HHHHC-------CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCC-cchHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 99763 256678888888876 77899999999999998873 1257889999999998 88999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 007407 522 AIFSPACTVFLTKKNIWLKAAQLEKSY-G-----CRESLIALLRKAVTYCPQAEVLWLMGAK 577 (605)
Q Consensus 522 ~i~~~al~~~P~~~~~w~~la~l~~~~-g-----~~e~A~~~lekAl~~~P~~~~l~l~~a~ 577 (605)
..|+++++. |++..+++.+|.++... | ++++|+..|++|++... +.....++.
T Consensus 150 ~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~--~~A~~~l~~ 208 (212)
T 3rjv_A 150 EYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF--DTGCEEFDR 208 (212)
T ss_dssp HHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 999999998 77888999999999864 3 89999999999999853 444444433
No 167
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.06 E-value=3e-09 Score=118.55 Aligned_cols=165 Identities=8% Similarity=0.042 Sum_probs=136.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHH
Q 007407 408 YGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAI 486 (605)
Q Consensus 408 ~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i 486 (605)
.++|...++++++.+|.+..+|...+.+- ..|+. . ..+. ....++++...
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~----------------~----~~~~---------~~~~~~~eL~~ 95 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETE----------------K----SPEE---------SAALVKAELGF 95 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTT----------------S----CHHH---------HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccc----------------c----chhh---------hhhhHHHHHHH
Confidence 45677788888888888888887776542 22210 0 0000 00116778889
Q ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Q 007407 487 ITNTIEIGVDEEDKKRTWVADVEECKKRG--SIETARAIFSPACTVFLTKKNIWLKAAQLEKSYG-CRESLIALLRKAVT 563 (605)
Q Consensus 487 ~~~al~~~p~~~~~~~~~~~~a~~~~~~g--~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g-~~e~A~~~lekAl~ 563 (605)
+..++..+|. +..+|...+-++...+ +++++...+.++++.+|.+..+|...+.+....| .++++++.++++++
T Consensus 96 ~~~~l~~~pK---~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~ 172 (567)
T 1dce_A 96 LESCLRVNPK---SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT 172 (567)
T ss_dssp HHHHHHHCTT---CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT
T ss_pred HHHHHHhCCC---CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 9999999998 8999999999999999 7799999999999999999999999999999999 89999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHc--------------CChHHHHHHHHHHHHHCCCCCC
Q 007407 564 YCPQAEVLWLMGAKEKWLA--------------GDVPATRDILQEAYAAIPNSEE 604 (605)
Q Consensus 564 ~~P~~~~l~l~~a~~~~~~--------------gd~~~Ar~il~kAl~~~P~~~~ 604 (605)
.+|.+..+|...+.++... +.+++|.+.+.+|+..+|+++.
T Consensus 173 ~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~s 227 (567)
T 1dce_A 173 RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQS 227 (567)
T ss_dssp TTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSH
T ss_pred HCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCcc
Confidence 9999999999999988763 5579999999999999999863
No 168
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.06 E-value=9.5e-10 Score=95.35 Aligned_cols=91 Identities=16% Similarity=0.128 Sum_probs=83.6
Q ss_pred cCCHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 007407 514 RGSIETARAIFSPACTV---FLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRD 590 (605)
Q Consensus 514 ~g~~~~A~~i~~~al~~---~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~ 590 (605)
.|++++|+..|+++++. +|++..+|..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 57889999999999999 699999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCCC
Q 007407 591 ILQEAYAAIPNSEE 604 (605)
Q Consensus 591 il~kAl~~~P~~~~ 604 (605)
.|.++++.+|+++.
T Consensus 83 ~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 83 LLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHHCCCHH
T ss_pred HHHHHHHhCCCcHH
Confidence 99999999998754
No 169
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.03 E-value=1.6e-09 Score=109.66 Aligned_cols=103 Identities=12% Similarity=-0.063 Sum_probs=62.3
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 007407 463 DRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAA 542 (605)
Q Consensus 463 ~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la 542 (605)
....|...|..+...|+++.|...|++++..+|. +..+|..++..+...|++++|+..|+++++.+|++..+|+.+|
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL---VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3445555566666666666666666666666555 5555666666666666666666666666666666666666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC
Q 007407 543 QLEKSYGCRESLIALLRKAVTYCPQA 568 (605)
Q Consensus 543 ~l~~~~g~~e~A~~~lekAl~~~P~~ 568 (605)
.++...|++++|+..|++++..+|++
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 66666666666666666666665543
No 170
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.02 E-value=1.2e-10 Score=127.22 Aligned_cols=134 Identities=8% Similarity=-0.075 Sum_probs=117.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 007407 467 WMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEK 546 (605)
Q Consensus 467 wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~ 546 (605)
|...|..+...|++++|...|++++..+|. +..+|..+|..+...|++++|+..|+++++.+|++..+|..+|.++.
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 85 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPS---NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 85 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 444555667789999999999999999988 78999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHcCChHHHHHHHH-----------HHHHHCCCCC
Q 007407 547 SYGCRESLIALLRKAVTYCPQAEVLWLMGAKE--KWLAGDVPATRDILQ-----------EAYAAIPNSE 603 (605)
Q Consensus 547 ~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~--~~~~gd~~~Ar~il~-----------kAl~~~P~~~ 603 (605)
..|++++|++.|++|++.+|++..+|..++.+ +...|++++|.++++ +++.+.|+..
T Consensus 86 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~ 155 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYS 155 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCC
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccc
Confidence 99999999999999999999999899888887 777899999999999 8887777653
No 171
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.02 E-value=5.1e-09 Score=106.95 Aligned_cols=47 Identities=11% Similarity=0.070 Sum_probs=22.5
Q ss_pred cHHHHHHHHHHHHHhCC--CCHHHHHHHHHHH-HcCCHHHHHHHHHHHHH
Q 007407 407 TYGVARSVLNKARKKLP--KERAIWIAAAKLE-ANGNTSMVGKIIERGIR 453 (605)
Q Consensus 407 ~~e~A~~vL~~al~~~p--~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~ 453 (605)
++++|.++|.+++...| .+.+++...+++. ..|+.+.|.+++++..+
T Consensus 115 ~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 115 DLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 44455555555544443 3444444444444 45555555555544433
No 172
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.02 E-value=2.2e-10 Score=124.40 Aligned_cols=105 Identities=10% Similarity=0.017 Sum_probs=91.1
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007407 500 KKRTWVADVEECKKRGSIETARAIFSPACTVFLTK---------------KNIWLKAAQLEKSYGCRESLIALLRKAVTY 564 (605)
Q Consensus 500 ~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~---------------~~~w~~la~l~~~~g~~e~A~~~lekAl~~ 564 (605)
....|...+..+...|++++|+..|.+|++.+|++ ..+|..+|.++.+.|++++|+..|++|+..
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 55667777777777777888888888888777777 799999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCCC
Q 007407 565 CPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSEE 604 (605)
Q Consensus 565 ~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~~ 604 (605)
+|++..+|+.+|.++...|++++|+..|.+|++++|++..
T Consensus 347 ~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~ 386 (457)
T 1kt0_A 347 DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA 386 (457)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----C
T ss_pred CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence 9999999999999999999999999999999999999864
No 173
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.01 E-value=5.1e-09 Score=90.47 Aligned_cols=102 Identities=11% Similarity=-0.017 Sum_probs=94.8
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHH
Q 007407 500 KKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQA-------EVLW 572 (605)
Q Consensus 500 ~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~-------~~l~ 572 (605)
....|+..+..+...|++++|..+|.+++...|.+..+|..+|.++...|++++|..+|++++...|++ ..+|
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 567788899999999999999999999999999999999999999999999999999999999998876 8889
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCC
Q 007407 573 LMGAKEKWLAGDVPATRDILQEAYAAIPN 601 (605)
Q Consensus 573 l~~a~~~~~~gd~~~Ar~il~kAl~~~P~ 601 (605)
..+|.++...|++++|...|.++++..|+
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 111 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999884
No 174
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.99 E-value=5.4e-10 Score=119.20 Aligned_cols=276 Identities=11% Similarity=0.068 Sum_probs=110.8
Q ss_pred ccccccccCCccccCchhHHhhhhhhcccchhhhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHH
Q 007407 231 LDGISDSVTGLTVFDPSGYLTRMNDLKITTNSELRDILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITK 310 (605)
Q Consensus 231 ld~~~~~~~~~~~~dp~~yl~~L~~~~~~~~~~~gd~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~ 310 (605)
+|++.+.+..+ -+|.-| +..+....+.|+++.|...|.++ .++.+|...++.++..|+++.|+.+++.
T Consensus 19 ld~A~~fae~~--~~~~vW-----s~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 19 LDRAYEFAERC--NEPAVW-----SQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhC--CChHHH-----HHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 56665544333 334444 44456678899999999999653 4666888888888889999999998888
Q ss_pred HHhhCCCCHHHHHHHHhhcCchhHHHHHHHHHhhCCCcHHHHHHHHHHHHhCCCcHHHHHHHHH----hCCHHHHHHHHH
Q 007407 311 GCNMCPKNEDVWLEACRLARPDEAKSVVAKGVRQIPKSANKIRALRMALDEIPDSVRLWKALVE----ISSEEEARILLH 386 (605)
Q Consensus 311 ~l~~~P~~~~lwle~a~L~~~~~Ak~~l~~al~~~P~s~~a~~vl~kAle~~P~~~~lw~~l~~----le~~e~A~~~l~ 386 (605)
+.+..|. +.+..+++.++..- .-+.++..+. ..|+. ..|..++. .+.+++|+.+|.
T Consensus 87 ark~~~~-~~i~~~Li~~Y~Kl---g~l~e~e~f~---------------~~pn~-~a~~~IGd~~~~~g~yeeA~~~Y~ 146 (449)
T 1b89_A 87 ARKKARE-SYVETELIFALAKT---NRLAELEEFI---------------NGPNN-AHIQQVGDRCYDEKMYDAAKLLYN 146 (449)
T ss_dssp --------------------------CHHHHTTTT---------------TCC-----------------CTTTHHHHHH
T ss_pred HHHhCcc-chhHHHHHHHHHHh---CCHHHHHHHH---------------cCCcH-HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8775333 45554444443220 0011122111 12332 25555433 346678888888
Q ss_pred HHHHhCCCCHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHH
Q 007407 387 RAVECCPLDVELWLALVRLETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRD 465 (605)
Q Consensus 387 rAl~~~P~~~~lw~aLa~le~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~ 465 (605)
++ +....+-..|.++++|++|...+.++ .++..|...+..- ..|+...|...... |.. ..+
T Consensus 147 ~a----~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~--------~ad 208 (449)
T 1b89_A 147 NV----SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVV--------HAD 208 (449)
T ss_dssp HT----TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTT--------CHH
T ss_pred Hh----hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHh--------CHh
Confidence 66 33334444566777888888888877 4677787776544 67777777443332 111 222
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhcC-----CCHHHH
Q 007407 466 TWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKK--RGSIETARAIFSPACTVFL-----TKKNIW 538 (605)
Q Consensus 466 ~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~--~g~~~~A~~i~~~al~~~P-----~~~~~w 538 (605)
........+++.|.++++..+++.++..++. ...+|..++.++.+ -+++.+....|...+.+.| .+..+|
T Consensus 209 ~l~~lv~~Yek~G~~eEai~lLe~aL~le~a---h~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w 285 (449)
T 1b89_A 209 ELEELINYYQDRGYFEELITMLEAALGLERA---HMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLW 285 (449)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTSTTC---CHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCH
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHhCCcHH---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3334556778888888888888888877766 67777777766654 3455666666666666666 677788
Q ss_pred HHHHHHHHHcCCHHHHHHHHH
Q 007407 539 LKAAQLEKSYGCRESLIALLR 559 (605)
Q Consensus 539 ~~la~l~~~~g~~e~A~~~le 559 (605)
..+..++...++++.|..+.-
T Consensus 286 ~e~~~ly~~~~e~d~A~~tm~ 306 (449)
T 1b89_A 286 AELVFLYDKYEEYDNAIITMM 306 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhhchHHHHHHHHH
Confidence 888888888888887765543
No 175
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.99 E-value=1.1e-08 Score=90.48 Aligned_cols=107 Identities=7% Similarity=-0.050 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-------H
Q 007407 464 RDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKK-------N 536 (605)
Q Consensus 464 ~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~-------~ 536 (605)
...|...+..+.+.|++++|...|+++|.++|+ +..+|..+|.++...|++++|+..|.+++++.|+.. .
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~---~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS---NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence 346778889999999999999999999999998 888999999999999999999999999999988753 5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 007407 537 IWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLM 574 (605)
Q Consensus 537 ~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~ 574 (605)
+|..+|.++...|++++|++.|++++..+|+ +.+.-.
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~ 121 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKK 121 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHH
Confidence 7888999999999999999999999999985 444333
No 176
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.98 E-value=5.3e-09 Score=110.32 Aligned_cols=140 Identities=13% Similarity=-0.051 Sum_probs=116.0
Q ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHH
Q 007407 426 RAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTW 504 (605)
Q Consensus 426 ~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~ 504 (605)
...|..+|... ..|++++|...|+++++..+.. . . .. .........|. ...+|
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~--------~-------~-~~-------~~~~~~~~~~~---~~~~~ 276 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGS--------R-------A-AA-------EDADGAKLQPV---ALSCV 276 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--------H-------H-HS-------CHHHHGGGHHH---HHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcC--------c-------c-cc-------ChHHHHHHHHH---HHHHH
Confidence 66677888766 8899999999999998865431 0 0 00 12222233333 78889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 007407 505 VADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGD 584 (605)
Q Consensus 505 ~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd 584 (605)
..+|.++...|++++|+..|+++++.+|++..+|+.+|.++...|++++|+..|++|++.+|++..++..++.++...++
T Consensus 277 ~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~ 356 (370)
T 1ihg_A 277 LNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA 356 (370)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred hHHHHHH
Q 007407 585 VPATRDI 591 (605)
Q Consensus 585 ~~~Ar~i 591 (605)
.+++.+.
T Consensus 357 ~~~a~k~ 363 (370)
T 1ihg_A 357 QKDKEKA 363 (370)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 8877654
No 177
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.97 E-value=1.2e-09 Score=100.49 Aligned_cols=86 Identities=9% Similarity=-0.012 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----
Q 007407 517 IETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCR----------ESLIALLRKAVTYCPQAEVLWLMGAKEKWLA---- 582 (605)
Q Consensus 517 ~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~----------e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~---- 582 (605)
+++|+..|+.+++.+|++..+|..+|.++...+++ ++|+..|++|++++|++..+|..+|.++...
T Consensus 18 feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~ 97 (158)
T 1zu2_A 18 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLT 97 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccC
Confidence 45555555555555555555555555555444432 3555555555555555555555555555443
Q ss_pred -------CChHHHHHHHHHHHHHCCCC
Q 007407 583 -------GDVPATRDILQEAYAAIPNS 602 (605)
Q Consensus 583 -------gd~~~Ar~il~kAl~~~P~~ 602 (605)
|++++|..+|++|++++|++
T Consensus 98 P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 98 PDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred cchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 25555555555555555554
No 178
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.93 E-value=6.9e-09 Score=95.50 Aligned_cols=108 Identities=14% Similarity=0.031 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------h--hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 007407 464 RDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDE-------E--DKKRTWVADVEECKKRGSIETARAIFSPACTV---- 530 (605)
Q Consensus 464 ~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~-------~--~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~---- 530 (605)
...|...+..+...|++++|...|+++|.++|+. . .+..+|...+..+...|++++|+..|.+||++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 4567778888888889999999999999988872 1 13448999999999999999999999999999
Q ss_pred ---cCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 007407 531 ---FLTKKNIW----LKAAQLEKSYGCRESLIALLRKAVTYCPQAEVL 571 (605)
Q Consensus 531 ---~P~~~~~w----~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l 571 (605)
+|++..+| +.+|.++...|++++|+..|++|+++.|++..+
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 99999999 999999999999999999999999999976443
No 179
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.93 E-value=4.7e-09 Score=88.19 Aligned_cols=103 Identities=13% Similarity=0.195 Sum_probs=96.0
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--CHHHHHH
Q 007407 463 DRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLT--KKNIWLK 540 (605)
Q Consensus 463 ~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~--~~~~w~~ 540 (605)
+...|...|..+...|+++.|...+++++..+|. +..+|+.++..+...|++++|+..|+++++..|+ +..+|..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE---ESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 3456788888889999999999999999999988 7889999999999999999999999999999999 9999999
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHHhCCCC
Q 007407 541 AAQLEKSY-GCRESLIALLRKAVTYCPQA 568 (605)
Q Consensus 541 la~l~~~~-g~~e~A~~~lekAl~~~P~~ 568 (605)
++.++... |++++|++.|++++..+|.+
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 99999999 99999999999999999865
No 180
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.92 E-value=1.5e-08 Score=95.31 Aligned_cols=98 Identities=10% Similarity=0.022 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---cCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC---
Q 007407 501 KRTWVADVEECKKRGSIETARAIFSPACTV---FLTK----KNIWLKAAQLEKSYGCRESLIALLRKAVTYCP--QA--- 568 (605)
Q Consensus 501 ~~~~~~~a~~~~~~g~~~~A~~i~~~al~~---~P~~----~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P--~~--- 568 (605)
..++...+..+...|++++|+..|.+++.. .|++ ..++..+|.++...|++++|+..|++++...+ .+
T Consensus 66 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 145 (203)
T 3gw4_A 66 HRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVA 145 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHH
Confidence 334444555555555555555555555544 2211 23445555555555555555555555554421 11
Q ss_pred -HHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007407 569 -EVLWLMGAKEKWLAGDVPATRDILQEAYAA 598 (605)
Q Consensus 569 -~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~ 598 (605)
..++..+|.+++..|++++|...|.+|+++
T Consensus 146 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 146 IACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 112344455555555555555555555544
No 181
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.91 E-value=1.7e-08 Score=90.22 Aligned_cols=139 Identities=8% Similarity=-0.044 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------
Q 007407 464 RDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDE---EDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTK------ 534 (605)
Q Consensus 464 ~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~---~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~------ 534 (605)
...|...+..+...|++++|...+++++...+.. .....++...+..+...|++++|...|++++...+..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 3456677777788888888888888888764321 1133578888999999999999999999999886553
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCC
Q 007407 535 KNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQA------EVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNS 602 (605)
Q Consensus 535 ~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~------~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~ 602 (605)
..++..+|.++...|++++|...|++++...+.. ..++..+|.+++..|++++|...+.+++++....
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 162 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 162 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Confidence 6788899999999999999999999999875321 4567888999999999999999999999886543
No 182
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.90 E-value=4.7e-09 Score=96.43 Aligned_cols=98 Identities=12% Similarity=-0.064 Sum_probs=86.5
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 007407 475 DRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSI----------ETARAIFSPACTVFLTKKNIWLKAAQL 544 (605)
Q Consensus 475 e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~----------~~A~~i~~~al~~~P~~~~~w~~la~l 544 (605)
.+.+.+++|+..++.++..+|. +...|+.++..+...+++ ++|+..|++|++++|++..+|+.+|.+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~---~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~a 89 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL---DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 3445688999999999999998 888999999988888764 599999999999999999999999999
Q ss_pred HHHcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHH
Q 007407 545 EKSYG-----------CRESLIALLRKAVTYCPQAEVLWLMG 575 (605)
Q Consensus 545 ~~~~g-----------~~e~A~~~lekAl~~~P~~~~l~l~~ 575 (605)
+...| ++++|++.|++|++++|+++..+..+
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al 131 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSL 131 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99875 89999999999999999987655443
No 183
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.89 E-value=6.2e-09 Score=89.51 Aligned_cols=82 Identities=10% Similarity=0.029 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007407 482 TCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKA 561 (605)
Q Consensus 482 ~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekA 561 (605)
.+...|++++..+|. +..+|+.++..+...|++++|+..|++++..+|++..+|+.+|.++...|++++|+..|+++
T Consensus 3 ~a~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQGTD---NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTTCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456677777777776 66777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHhCC
Q 007407 562 VTYCP 566 (605)
Q Consensus 562 l~~~P 566 (605)
+...|
T Consensus 80 l~~~~ 84 (115)
T 2kat_A 80 LAAAQ 84 (115)
T ss_dssp HHHHH
T ss_pred HHhcc
Confidence 77766
No 184
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.87 E-value=1.1e-08 Score=91.55 Aligned_cols=110 Identities=19% Similarity=0.109 Sum_probs=86.3
Q ss_pred cccHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHhCCCch-----hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007407 461 VIDRDTWMKEAEVADRAGSV------VTCVAIITNTIEIGVDEE-----DKKRTWVADVEECKKRGSIETARAIFSPACT 529 (605)
Q Consensus 461 ~~~~~~wl~~A~~~e~~g~~------~~A~~i~~~al~~~p~~~-----~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~ 529 (605)
+.+.+.|..++...++.|++ +..+.+|++++..-|... -...+|+.+|.+ ...+++++|+.+|+.++.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHH
Confidence 34788899999888888888 888888888888766521 245678888876 345788888888888887
Q ss_pred hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 007407 530 VFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVL 571 (605)
Q Consensus 530 ~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l 571 (605)
.......+|..+|+++.++|+...|++++.+|+..||....+
T Consensus 89 ~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 89 NCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp HCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred HhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 766678888888888888888888888888888888876554
No 185
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.87 E-value=9.9e-08 Score=89.53 Aligned_cols=161 Identities=8% Similarity=-0.040 Sum_probs=126.6
Q ss_pred hhcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcc-cccHHHHHHHHHHHHHcCCHH
Q 007407 405 LETYGVARSVLNKARKKLP-KERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEV-VIDRDTWMKEAEVADRAGSVV 481 (605)
Q Consensus 405 le~~e~A~~vL~~al~~~p-~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~-~~~~~~wl~~A~~~e~~g~~~ 481 (605)
.++++.|..+++.... .| ....+|..++.+. ..|++++|...+++++......+. +.....|...+..+...|+++
T Consensus 5 ~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 5 AHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp --CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3567777774444333 44 5577888888877 899999999999999997765543 234567888899999999999
Q ss_pred HHHHHHHHHHHh---CCCch-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC--CC----HHHHHHHHHHHHHcCCH
Q 007407 482 TCVAIITNTIEI---GVDEE-DKKRTWVADVEECKKRGSIETARAIFSPACTVFL--TK----KNIWLKAAQLEKSYGCR 551 (605)
Q Consensus 482 ~A~~i~~~al~~---~p~~~-~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P--~~----~~~w~~la~l~~~~g~~ 551 (605)
.|...+++++.. .++++ ....++...+..+...|++++|+..|++++...+ .+ ..++..+|.++...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 999999999987 34222 3466788899999999999999999999997643 22 23468899999999999
Q ss_pred HHHHHHHHHHHHhCC
Q 007407 552 ESLIALLRKAVTYCP 566 (605)
Q Consensus 552 e~A~~~lekAl~~~P 566 (605)
++|...|++++....
T Consensus 164 ~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 164 LEAQQHWLRARDIFA 178 (203)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998764
No 186
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.86 E-value=3.3e-07 Score=92.48 Aligned_cols=161 Identities=9% Similarity=-0.021 Sum_probs=122.3
Q ss_pred hhcHHHHHHHHHHHHHhCCCCHH------HHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCccc-ccHHHHHHHHHHHHH
Q 007407 405 LETYGVARSVLNKARKKLPKERA------IWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVV-IDRDTWMKEAEVADR 476 (605)
Q Consensus 405 le~~e~A~~vL~~al~~~p~~~~------iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~-~~~~~wl~~A~~~e~ 476 (605)
.++|+.|...++++++..+.... .+..++.+. ..|++++|...+++++...+..... .....|...|..+..
T Consensus 88 ~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~ 167 (293)
T 2qfc_A 88 QKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAE 167 (293)
T ss_dssp TTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 34666676667666666554332 123345555 7789999999999998766543211 124578888999999
Q ss_pred cCCHHHHHHHHHHHHH---hCCCchh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC------CHHHHHHHHHHHH
Q 007407 477 AGSVVTCVAIITNTIE---IGVDEED-KKRTWVADVEECKKRGSIETARAIFSPACTVFLT------KKNIWLKAAQLEK 546 (605)
Q Consensus 477 ~g~~~~A~~i~~~al~---~~p~~~~-~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~------~~~~w~~la~l~~ 546 (605)
.|++++|...|++++. ..|.+.. ...++...+..+...|++++|...|+++++..+. ...+|..+|.++.
T Consensus 168 ~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~ 247 (293)
T 2qfc_A 168 NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLR 247 (293)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 9999999999999984 3444221 2368899999999999999999999999988643 2788999999999
Q ss_pred HcCCHHHH-HHHHHHHHHhC
Q 007407 547 SYGCRESL-IALLRKAVTYC 565 (605)
Q Consensus 547 ~~g~~e~A-~~~lekAl~~~ 565 (605)
..|++++| ...|++|+...
T Consensus 248 ~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 248 KLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HTTCCHHHHHHHHHHHHHHH
T ss_pred HcCCcHHHHHHHHHHHHHHH
Confidence 99999999 88899998764
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.86 E-value=8.1e-09 Score=108.91 Aligned_cols=76 Identities=9% Similarity=-0.038 Sum_probs=72.4
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCCC
Q 007407 529 TVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSEE 604 (605)
Q Consensus 529 ~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~~ 604 (605)
...|.+..+|..+|.++.+.|++++|+..|++|++.+|+++.+|+.+|.++...|++++|...|++|++++|++..
T Consensus 267 ~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~ 342 (370)
T 1ihg_A 267 KLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA 342 (370)
T ss_dssp GGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence 3778889999999999999999999999999999999999999999999999999999999999999999998753
No 188
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.83 E-value=1.5e-07 Score=96.09 Aligned_cols=188 Identities=12% Similarity=-0.012 Sum_probs=126.4
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007407 411 ARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITN 489 (605)
Q Consensus 411 A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~ 489 (605)
|...|++.+...+.+...++.+|.+. ..|++++|.+++.+++...+. ....+.+...+..+.+.|+++.|+++++.
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~---~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEA---EGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCS---TTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC---cCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 45556665555445555566666666 778888888888888765541 12567777888888888888888888888
Q ss_pred HHHhCCC---chhhHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007407 490 TIEIGVD---EEDKKRTWVADV--EECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTY 564 (605)
Q Consensus 490 al~~~p~---~~~~~~~~~~~a--~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~ 564 (605)
+...+|+ ..+...+.+..+ .+....+++..|..+|+++...+|+.......+. ++...|++++|...++.+++.
T Consensus 162 ~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 162 YTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHHHHHHHHHSH
T ss_pred HHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHHHHHHHHHHh
Confidence 8888771 001333333323 3333344788888888888888886222222222 677788888888888876665
Q ss_pred ----------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCCC
Q 007407 565 ----------CPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSEE 604 (605)
Q Consensus 565 ----------~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~~ 604 (605)
.|+++.+...++.+....|+ +|.+++.++.+.+|+++.
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHH
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChH
Confidence 37777777677666666776 778888888888888763
No 189
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.82 E-value=3.6e-07 Score=92.21 Aligned_cols=161 Identities=9% Similarity=0.001 Sum_probs=120.0
Q ss_pred hhcHHHHHHHHHHHHHhCCCCHHH-----HHH-HHHHH-HcCCHHHHHHHHHHHHHHhccCccc-ccHHHHHHHHHHHHH
Q 007407 405 LETYGVARSVLNKARKKLPKERAI-----WIA-AAKLE-ANGNTSMVGKIIERGIRALQGEEVV-IDRDTWMKEAEVADR 476 (605)
Q Consensus 405 le~~e~A~~vL~~al~~~p~~~~i-----wi~-~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~-~~~~~wl~~A~~~e~ 476 (605)
.++|+.|...++++++..+..+.. |+. ++.+. ..|++++|...|++++...+..... .....+...|..+..
T Consensus 88 ~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~ 167 (293)
T 3u3w_A 88 QKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAE 167 (293)
T ss_dssp TTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 345666666777666655554431 222 45556 6778888888888888854433211 123457788888888
Q ss_pred cCCHHHHHHHHHHHHHh---C-CCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHH
Q 007407 477 AGSVVTCVAIITNTIEI---G-VDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTK------KNIWLKAAQLEK 546 (605)
Q Consensus 477 ~g~~~~A~~i~~~al~~---~-p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~------~~~w~~la~l~~ 546 (605)
.|+++.|...|++++.. . ...+....++...+..+...|++++|+..|.++++..+.. ..+|..+|.++.
T Consensus 168 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~ 247 (293)
T 3u3w_A 168 NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLR 247 (293)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 89999999999998853 1 1223356688999999999999999999999999887543 789999999999
Q ss_pred HcCC-HHHHHHHHHHHHHhC
Q 007407 547 SYGC-RESLIALLRKAVTYC 565 (605)
Q Consensus 547 ~~g~-~e~A~~~lekAl~~~ 565 (605)
..|+ +++|...|++|+...
T Consensus 248 ~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 248 KLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HTTCCHHHHHHHHHHHHHHH
T ss_pred HhCCcHHHHHHHHHHHHHHH
Confidence 9994 699999999999764
No 190
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.79 E-value=8.4e-08 Score=77.84 Aligned_cols=84 Identities=15% Similarity=0.155 Sum_probs=78.4
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007407 500 KKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEK 579 (605)
Q Consensus 500 ~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~ 579 (605)
....|...+..+...|++++|...|++++...|++..+|..+|.++...|++++|+..|++++..+|+++.++..++.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred HHcC
Q 007407 580 WLAG 583 (605)
Q Consensus 580 ~~~g 583 (605)
...|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 6543
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.79 E-value=1.2e-08 Score=106.10 Aligned_cols=152 Identities=9% Similarity=-0.024 Sum_probs=87.7
Q ss_pred CCHHHHHHHHHh----hcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCcccccHHHHHH
Q 007407 394 LDVELWLALVRL----ETYGVARSVLNKARKKLPKERAIWIAAAKLEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMK 469 (605)
Q Consensus 394 ~~~~lw~aLa~l----e~~e~A~~vL~~al~~~p~~~~iwi~~a~Le~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~ 469 (605)
.....|..++.. ++|+.|...|++++...|.+.. +...|+...+...+ ....|..
T Consensus 177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l--------------~~~~~~n 235 (338)
T 2if4_A 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAV--------------KNPCHLN 235 (338)
T ss_dssp HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHH--------------HTHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHH--------------HHHHHHH
Confidence 335566666654 4799999999999999987642 11122222222111 1236888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-Hc
Q 007407 470 EAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEK-SY 548 (605)
Q Consensus 470 ~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~-~~ 548 (605)
+|..+...|+++.|...+++++..+|. +..+|+.++..+...|++++|+..|+++++++|++..++..++.+.. ..
T Consensus 236 la~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~ 312 (338)
T 2if4_A 236 IAACLIKLKRYDEAIGHCNIVLTEEEK---NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEK 312 (338)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998 88999999999999999999999999999999999999999998844 55
Q ss_pred CCHHHHHHHHHHHHHhCCCCH
Q 007407 549 GCRESLIALLRKAVTYCPQAE 569 (605)
Q Consensus 549 g~~e~A~~~lekAl~~~P~~~ 569 (605)
+..+.+..+|++++...|+++
T Consensus 313 ~~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 313 ALYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHhhCCCCCCC
Confidence 678889999999999998764
No 192
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.78 E-value=1.5e-08 Score=84.41 Aligned_cols=92 Identities=12% Similarity=0.100 Sum_probs=82.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 007407 505 VADVEECKKRGSIETARAIFSPACTVFLTKKN-IWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAG 583 (605)
Q Consensus 505 ~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~-~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~g 583 (605)
+..+..+...|++++|+..|+++++.+|++.. +|+.+|.++...|++++|+..|++++..+|+++.+|.. +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 45677888999999999999999999999999 99999999999999999999999999999999887743 5
Q ss_pred ChHHHHHHHHHHHHHCCCCCC
Q 007407 584 DVPATRDILQEAYAAIPNSEE 604 (605)
Q Consensus 584 d~~~Ar~il~kAl~~~P~~~~ 604 (605)
.+.+|...|.++...+|+++.
T Consensus 76 ~~~~a~~~~~~~~~~~p~~~~ 96 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEHHH 96 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCCSS
T ss_pred HHHHHHHHHHHHhccCccccc
Confidence 578889999999999988764
No 193
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.77 E-value=1.9e-07 Score=98.84 Aligned_cols=217 Identities=11% Similarity=-0.012 Sum_probs=145.2
Q ss_pred HHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHH
Q 007407 370 KALVEISSEEEARILLHRAVECCPLDVELWLALVRLETYGVARSVLNKARKKLPKERAIWIAAAKLE-ANGNTSMVGKII 448 (605)
Q Consensus 370 ~~l~~le~~e~A~~~l~rAl~~~P~~~~lw~aLa~le~~e~A~~vL~~al~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~ 448 (605)
..++.-+++++|+..|.++++..|...+.....+.. ........ .++..++.+. ..|+++++..++
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~----------~al~~l~~~y~~~~~~~~a~~~~ 78 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVD---DKRRNEQE----------TSILELGQLYVTMGAKDKLREFI 78 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBC---SHHHHHHH----------HHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHH---HHHhhhHH----------HHHHHHHHHHHHCCCHHHHHHHH
Confidence 445666678888888888888777654322111100 01111111 2245567766 888888888888
Q ss_pred HHHHHHhccCccc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---chhhHHHHHHHHHHHHHcCCHHHHHHHH
Q 007407 449 ERGIRALQGEEVV-IDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVD---EEDKKRTWVADVEECKKRGSIETARAIF 524 (605)
Q Consensus 449 ~~al~~~p~~~~~-~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~---~~~~~~~~~~~a~~~~~~g~~~~A~~i~ 524 (605)
.+++...+..+.. ....+....+..+...|..+.+..+++.++.+.+. ......++..+|.++...|++.+|..++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l 158 (434)
T 4b4t_Q 79 PHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALI 158 (434)
T ss_dssp HHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHH
Confidence 8888776653211 11123333444455567888888888888775321 1235677888888899999999999999
Q ss_pred HHHHHhc------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC----HHHHHHHHHHHHHcCChHHHHHH
Q 007407 525 SPACTVF------LTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYC---PQA----EVLWLMGAKEKWLAGDVPATRDI 591 (605)
Q Consensus 525 ~~al~~~------P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~---P~~----~~l~l~~a~~~~~~gd~~~Ar~i 591 (605)
..++... |....++...+.++...|++++|..+|++++... ++. ..++...+..+...|++++|...
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~ 238 (434)
T 4b4t_Q 159 NDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSY 238 (434)
T ss_dssp HHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHH
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 8888663 3346788888999999999999999999988763 232 34566667777778899999999
Q ss_pred HHHHHHHC
Q 007407 592 LQEAYAAI 599 (605)
Q Consensus 592 l~kAl~~~ 599 (605)
|.++++..
T Consensus 239 ~~~a~~~~ 246 (434)
T 4b4t_Q 239 FFESFESY 246 (434)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88888753
No 194
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.77 E-value=1e-08 Score=111.87 Aligned_cols=105 Identities=10% Similarity=0.050 Sum_probs=97.9
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007407 500 KKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEK 579 (605)
Q Consensus 500 ~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~ 579 (605)
....|...|..+...|++++|+..|+++++.+|++..+|..+|.++...|++++|+..|++|++.+|+++.+|..+|.++
T Consensus 5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 84 (477)
T 1wao_1 5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 84 (477)
T ss_dssp HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34445566777888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHHHCCCCCC
Q 007407 580 WLAGDVPATRDILQEAYAAIPNSEE 604 (605)
Q Consensus 580 ~~~gd~~~Ar~il~kAl~~~P~~~~ 604 (605)
...|++++|...|++|++.+|++..
T Consensus 85 ~~~g~~~eA~~~~~~al~~~p~~~~ 109 (477)
T 1wao_1 85 MALGKFRAALRDYETVVKVKPHDKD 109 (477)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTCTT
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 9999999999999999999998864
No 195
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.76 E-value=5.3e-09 Score=88.40 Aligned_cols=94 Identities=13% Similarity=0.007 Sum_probs=84.9
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHH
Q 007407 500 KKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQA------EVLWL 573 (605)
Q Consensus 500 ~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~------~~l~l 573 (605)
+...|+..+..+...|++++|+..|+++++.+|++..+|..+|.++...|++++|+..|++++..+|++ ..++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 567888999999999999999999999999999999999999999999999999999999999999998 88888
Q ss_pred HHHHHHHHcCChHHHHHHHH
Q 007407 574 MGAKEKWLAGDVPATRDILQ 593 (605)
Q Consensus 574 ~~a~~~~~~gd~~~Ar~il~ 593 (605)
.++..+...|+++.|...++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 88888888887777665544
No 196
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.72 E-value=2.1e-07 Score=83.33 Aligned_cols=117 Identities=9% Similarity=-0.028 Sum_probs=94.0
Q ss_pred hCCCCHHHHHHHHHHH-HcCCH------HHHHHHHHHHHHHhccCcccc---cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007407 421 KLPKERAIWIAAAKLE-ANGNT------SMVGKIIERGIRALQGEEVVI---DRDTWMKEAEVADRAGSVVTCVAIITNT 490 (605)
Q Consensus 421 ~~p~~~~iwi~~a~Le-~~g~~------~~a~~i~~~al~~~p~~~~~~---~~~~wl~~A~~~e~~g~~~~A~~i~~~a 490 (605)
..|++++.|..+..+. ..|++ ++.+.+|++|+..+|...--. -..+|+.+|...+ .++++.|+.+|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~e-i~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKA-IQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHH-HHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHH
Confidence 4689999999999754 66888 899999999999988753211 2468889997744 47899999999999
Q ss_pred HHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 007407 491 IEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKA 541 (605)
Q Consensus 491 l~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~l 541 (605)
++.... -..+|+.+|++.+++|++..|+.++.+|+...|....++...
T Consensus 87 ~~~hKk---FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a 134 (161)
T 4h7y_A 87 RANCKK---FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIA 134 (161)
T ss_dssp HHHCTT---BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHH
T ss_pred HHHhHH---HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 987443 688999999999999999999999999999999886665543
No 197
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.69 E-value=3.7e-08 Score=82.99 Aligned_cols=67 Identities=13% Similarity=0.070 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 007407 500 KKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCP 566 (605)
Q Consensus 500 ~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P 566 (605)
+..+|+.++..+...|++++|+..|+++++.+|++..+|+.+|.++...|++++|+..|++++...|
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 7778888888888888888888888888888888888888888888888888888888888888765
No 198
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.69 E-value=3.5e-07 Score=81.40 Aligned_cols=141 Identities=8% Similarity=-0.034 Sum_probs=113.3
Q ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCccc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---chhhH
Q 007407 427 AIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVV-IDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVD---EEDKK 501 (605)
Q Consensus 427 ~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~-~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~---~~~~~ 501 (605)
.++..++.+. ..|++++|...+++++...+..+.. .....+...+..+...|++++|...++.++...+. .....
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 4567777777 8899999999999999887653221 12357788899999999999999999999886432 12235
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 007407 502 RTWVADVEECKKRGSIETARAIFSPACTVFLT------KKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQ 567 (605)
Q Consensus 502 ~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~------~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~ 567 (605)
.++...+..+...|++++|...|++++...+. ...++..++.++...|++++|...|++++.....
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 67888899999999999999999999987532 2567888999999999999999999999987643
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.68 E-value=1.8e-07 Score=80.17 Aligned_cols=84 Identities=14% Similarity=0.107 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007407 519 TARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAA 598 (605)
Q Consensus 519 ~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~ 598 (605)
.|+..|+++++.+|++..+|+.+|.++...|++++|+..|++++..+|++...|..+|.++...|++++|+..|+++++.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 007407 599 IPNS 602 (605)
Q Consensus 599 ~P~~ 602 (605)
+|++
T Consensus 83 ~~~~ 86 (115)
T 2kat_A 83 AQSR 86 (115)
T ss_dssp HHHH
T ss_pred cccc
Confidence 8754
No 200
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.67 E-value=1.4e-06 Score=87.15 Aligned_cols=86 Identities=16% Similarity=0.268 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH-cCChHH
Q 007407 517 IETARAIFSPACTVFLT--KKNIWLKAAQLEKS-----YGCRESLIALLRKAVTYCPQA-EVLWLMGAKEKWL-AGDVPA 587 (605)
Q Consensus 517 ~~~A~~i~~~al~~~P~--~~~~w~~la~l~~~-----~g~~e~A~~~lekAl~~~P~~-~~l~l~~a~~~~~-~gd~~~ 587 (605)
...|+..+++|++++|+ +..+|..+|.+|.+ .|+.++|+++|++|++++|+. ...+..||.++.. .|+.+.
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 56889999999999999 67799999999998 489999999999999999975 8999999998877 599999
Q ss_pred HHHHHHHHHHHCCCC
Q 007407 588 TRDILQEAYAAIPNS 602 (605)
Q Consensus 588 Ar~il~kAl~~~P~~ 602 (605)
|...|++|+...|..
T Consensus 259 a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 259 FDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHcCCCCC
Confidence 999999999988864
No 201
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.57 E-value=4e-06 Score=88.58 Aligned_cols=208 Identities=11% Similarity=0.050 Sum_probs=144.8
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCHH-
Q 007407 349 ANKIRALRMALDEIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALVRLETYGVARSVLNKARKKLPKERA- 427 (605)
Q Consensus 349 ~~a~~vl~kAle~~P~~~~lw~~l~~le~~e~A~~~l~rAl~~~P~~~~lw~aLa~le~~e~A~~vL~~al~~~p~~~~- 427 (605)
.+|...|.+++...|.....+..... .........+++ ..+-..+...+++++|...+.++++..+....
T Consensus 21 ~eA~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~al------~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 21 NEAEQVYLSLLDKDSSQSSAAAGASV---DDKRRNEQETSI------LELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHHHHHHHSCCCSSSBSSSSSB---CSHHHHHHHHHH------HHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHHHHHHHhhCcccchhHHHHHH---HHHHhhhHHHHH------HHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 56788899998888875432111100 011112222222 11122334456788888888888776554221
Q ss_pred -----HHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcc-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---Cc
Q 007407 428 -----IWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEV-VIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGV---DE 497 (605)
Q Consensus 428 -----iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~-~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p---~~ 497 (605)
+...++.+. ..|+.+++..++++++...+..+. ......+...|..+...|.+..|..+++.++.... +.
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 233344555 678899999999999988766543 23457888999999999999999999999887521 12
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 007407 498 EDKKRTWVADVEECKKRGSIETARAIFSPACTVF---LTK----KNIWLKAAQLEKSYGCRESLIALLRKAVTYC 565 (605)
Q Consensus 498 ~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~---P~~----~~~w~~la~l~~~~g~~e~A~~~lekAl~~~ 565 (605)
+....++...+.++...|+++.|+.+|.+++... ++. ..++..++.++...|++++|...|.+++...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~ 246 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESY 246 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 3467789999999999999999999999998774 333 3567778888888999999999999998763
No 202
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.54 E-value=5.8e-06 Score=82.82 Aligned_cols=88 Identities=14% Similarity=0.146 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHc-CCHH
Q 007407 480 VVTCVAIITNTIEIGVDEEDKKRTWVADVEECKK-----RGSIETARAIFSPACTVFLTK-KNIWLKAAQLEKSY-GCRE 552 (605)
Q Consensus 480 ~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~-----~g~~~~A~~i~~~al~~~P~~-~~~w~~la~l~~~~-g~~e 552 (605)
...|+..++++++++|. ..+...|..++.+|.. -|+.++|+.+|++|++++|+. ..+++.+|.++... |+++
T Consensus 179 l~~A~a~lerAleLDP~-~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 179 VHAAVMMLERACDLWPS-YQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHHhCCC-cccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 56788999999999998 3356789999999988 499999999999999999985 99999999999884 9999
Q ss_pred HHHHHHHHHHHhCCCC
Q 007407 553 SLIALLRKAVTYCPQA 568 (605)
Q Consensus 553 ~A~~~lekAl~~~P~~ 568 (605)
.+..++++|+...|..
T Consensus 258 ~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 258 GFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHHcCCCCC
Confidence 9999999999987753
No 203
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.49 E-value=6.7e-07 Score=75.09 Aligned_cols=73 Identities=11% Similarity=-0.087 Sum_probs=65.5
Q ss_pred hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCC
Q 007407 530 VFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNS 602 (605)
Q Consensus 530 ~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~ 602 (605)
.+|++..+|+.+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++|...|++|+++.|++
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 4699999999999999999999999999999999999999999999999999999999999999999887754
No 204
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.44 E-value=1.1e-07 Score=80.02 Aligned_cols=95 Identities=8% Similarity=0.018 Sum_probs=84.9
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HH
Q 007407 463 DRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTK------KN 536 (605)
Q Consensus 463 ~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~------~~ 536 (605)
+...|...|..+...|+++.|...|++++..+|. +..+|..++..+...|++++|+..|+++++.+|++ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ---NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHH
Confidence 3567889999999999999999999999999998 78899999999999999999999999999999999 88
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Q 007407 537 IWLKAAQLEKSYGCRESLIALLRK 560 (605)
Q Consensus 537 ~w~~la~l~~~~g~~e~A~~~lek 560 (605)
+++.++.++...|+++.|+..|++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHH
Confidence 999999999888877666555543
No 205
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.43 E-value=1.2e-06 Score=95.67 Aligned_cols=125 Identities=13% Similarity=-0.008 Sum_probs=70.1
Q ss_pred HHHcCCHHHHHHHHHHHHHh-----CCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----CCC---HHHHHH
Q 007407 474 ADRAGSVVTCVAIITNTIEI-----GVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVF-----LTK---KNIWLK 540 (605)
Q Consensus 474 ~e~~g~~~~A~~i~~~al~~-----~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~-----P~~---~~~w~~ 540 (605)
+..+|.+++|..++++++.+ ++++++-..++..++..|..+|++++|..+|+++|.+. |++ ...+..
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 33455555555555555543 44444455556666666666666666666666666542 333 344555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007407 541 AAQLEKSYGCRESLIALLRKAVTY-----CPQAEVL---WLMGAKEKWLAGDVPATRDILQEAYAA 598 (605)
Q Consensus 541 la~l~~~~g~~e~A~~~lekAl~~-----~P~~~~l---~l~~a~~~~~~gd~~~Ar~il~kAl~~ 598 (605)
+|.++...|++++|+.+|++|+.+ -|+||.+ .-+++..+...+.+++|...|.+|.+.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666654 2455432 334445555566666666666666553
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.43 E-value=2.7e-06 Score=68.64 Aligned_cols=84 Identities=11% Similarity=0.210 Sum_probs=77.3
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 007407 463 DRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAA 542 (605)
Q Consensus 463 ~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la 542 (605)
....|...|..+...|+++.|...+++++..+|. +..+|..++..+...|++++|+..|+++++.+|++..+|..++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 84 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN---NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 4567888999999999999999999999999988 7889999999999999999999999999999999999999999
Q ss_pred HHHHHcC
Q 007407 543 QLEKSYG 549 (605)
Q Consensus 543 ~l~~~~g 549 (605)
.++...|
T Consensus 85 ~~~~~~g 91 (91)
T 1na3_A 85 NAKQKQG 91 (91)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 9887654
No 207
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.39 E-value=1.5e-06 Score=72.51 Aligned_cols=68 Identities=6% Similarity=-0.173 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 007407 500 KKRTWVADVEECKKRGS---IETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQ 567 (605)
Q Consensus 500 ~~~~~~~~a~~~~~~g~---~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~ 567 (605)
+..+|..+|..+...++ .++|+.+|+++|+.+|++..+++.+|..+.+.|++++|+.+|++++...|.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 44455555554443332 355555555555555555555555555555555555555555555555544
No 208
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.32 E-value=1.1e-06 Score=72.85 Aligned_cols=90 Identities=9% Similarity=0.073 Sum_probs=78.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 007407 468 MKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKR-TWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEK 546 (605)
Q Consensus 468 l~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~-~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~ 546 (605)
+..|..+...|+++.|...+++++..+|. +.. +|+.++..+...|++++|+..|+++++.+|++..+|..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~------ 74 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPV---GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR------ 74 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSS---THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH------
Confidence 45677788899999999999999999998 777 99999999999999999999999999999999988854
Q ss_pred HcCCHHHHHHHHHHHHHhCCCC
Q 007407 547 SYGCRESLIALLRKAVTYCPQA 568 (605)
Q Consensus 547 ~~g~~e~A~~~lekAl~~~P~~ 568 (605)
+.+.++...|++++..+|++
T Consensus 75 --~~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 75 --KMVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp --HHHHHHHHHHCCTTHHHHCC
T ss_pred --HHHHHHHHHHHHHhccCccc
Confidence 45677888888888887754
No 209
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.16 E-value=4.5e-05 Score=68.01 Aligned_cols=110 Identities=8% Similarity=-0.035 Sum_probs=83.9
Q ss_pred CHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCHHHH
Q 007407 479 SVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKS----YGCRESL 554 (605)
Q Consensus 479 ~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~----~g~~e~A 554 (605)
++++|...|+++...+.. .. . ++.++...+.++.|+..|+++.+. +++.+++.+|.++.. .+++++|
T Consensus 10 d~~~A~~~~~~aa~~g~~---~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEM---FG--C--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHTTCT---TH--H--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHcCCCH---hh--h--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHH
Confidence 356777778887776633 12 2 666777777788888888888776 778888888888887 6788888
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHC
Q 007407 555 IALLRKAVTYCPQAEVLWLMGAKEKWL----AGDVPATRDILQEAYAAI 599 (605)
Q Consensus 555 ~~~lekAl~~~P~~~~l~l~~a~~~~~----~gd~~~Ar~il~kAl~~~ 599 (605)
+.+|++|.+. .++..+..+|.++.. .+|+++|...|.+|.+..
T Consensus 81 ~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 8888888876 567788888888877 788888888888887763
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.12 E-value=8.7e-05 Score=77.14 Aligned_cols=73 Identities=11% Similarity=0.036 Sum_probs=55.4
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCC
Q 007407 529 TVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNS 602 (605)
Q Consensus 529 ~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~ 602 (605)
...|..+.+|..++......|++++|+..+++|+.++| +...|..+|+++.-.|++++|.+.|.+|+.++|..
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 55677777777777777777888888888888888876 35566777777777888888888888888888754
No 211
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.10 E-value=3e-05 Score=84.57 Aligned_cols=140 Identities=9% Similarity=-0.011 Sum_probs=106.3
Q ss_pred HHcCCHHHHHHHHHHHHHHhccCcc---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCchhhHHHHHHH
Q 007407 436 EANGNTSMVGKIIERGIRALQGEEV---VIDRDTWMKEAEVADRAGSVVTCVAIITNTIEI-----GVDEEDKKRTWVAD 507 (605)
Q Consensus 436 e~~g~~~~a~~i~~~al~~~p~~~~---~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~-----~p~~~~~~~~~~~~ 507 (605)
..+|++++|..+++++++.....-. +.....+..+|..+..+|.+++|..++++++.+ +|++++-...+..+
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3678888999999888887543211 234566777888889999999999999998875 67777778889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhc-----CCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 007407 508 VEECKKRGSIETARAIFSPACTVF-----LTKK---NIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMG 575 (605)
Q Consensus 508 a~~~~~~g~~~~A~~i~~~al~~~-----P~~~---~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~ 575 (605)
|.++..+|++++|..+|++|+++. |+++ .+...++..+...+.+++|..+|++|.+..-++-.+|.|.
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~~~~~~ 475 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQPMQVMA 475 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-------
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccc
Confidence 999999999999999999999763 5654 4556777888888999999999999987655555666443
No 212
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.04 E-value=2.2e-05 Score=71.29 Aligned_cols=91 Identities=10% Similarity=-0.048 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhc-C-CCHHHHHHHHHHHHHcCCHHHH
Q 007407 480 VVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRG---SIETARAIFSPACTVF-L-TKKNIWLKAAQLEKSYGCRESL 554 (605)
Q Consensus 480 ~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g---~~~~A~~i~~~al~~~-P-~~~~~w~~la~l~~~~g~~e~A 554 (605)
...++..|.+.+..++. +..+.+.+|-.+++.. ++.+++.+|+.+++.. | +...+++.+|..+.+.|++++|
T Consensus 14 l~~~~~~y~~e~~~~~~---~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSV---SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTTCC---CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHccCCC---cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 45667777777776665 6677777777777776 5557888888888777 6 5677788888888888888888
Q ss_pred HHHHHHHHHhCCCCHHHHH
Q 007407 555 IALLRKAVTYCPQAEVLWL 573 (605)
Q Consensus 555 ~~~lekAl~~~P~~~~l~l 573 (605)
+++++++++..|++..+..
T Consensus 91 ~~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp HHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHH
Confidence 8888888888887765543
No 213
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.01 E-value=0.00067 Score=74.10 Aligned_cols=154 Identities=12% Similarity=-0.016 Sum_probs=83.8
Q ss_pred HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHhCCCchhhHHHHHHH
Q 007407 437 ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAG---------SVVTCVAIITNTIEIGVDEEDKKRTWVAD 507 (605)
Q Consensus 437 ~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g---------~~~~A~~i~~~al~~~p~~~~~~~~~~~~ 507 (605)
+.|+.++|..+|++..+. |+.++...|-.....|...+ ..+.|..+|......+.. | +..+|...
T Consensus 38 k~G~~~~A~~lf~~M~~~----Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~-P-d~~tyn~l 111 (501)
T 4g26_A 38 KKGDVLEALRLYDEARRN----GVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVV-P-NEATFTNG 111 (501)
T ss_dssp TSCCHHHHHHHHHHHHHH----TCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCC-C-CHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHc----CCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCC-C-CHHHHHHH
Confidence 556666666666655442 23334444444443443322 245566666665554432 2 34455555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCC
Q 007407 508 VEECKKRGSIETARAIFSPACTVF-LTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYC--PQAEVLWLMGAKEKWLAGD 584 (605)
Q Consensus 508 a~~~~~~g~~~~A~~i~~~al~~~-P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~--P~~~~l~l~~a~~~~~~gd 584 (605)
+..+.+.|++++|..+|++..+.. +-+...|..+...+.+.|+.++|.++|++..... | +...|..+...+.+.|+
T Consensus 112 I~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P-d~~ty~~Li~~~~~~g~ 190 (501)
T 4g26_A 112 ARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVP-EEPELAALLKVSMDTKN 190 (501)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhhCCC
Confidence 666666666666666666655442 2244556666666666666666666666665542 3 34455555556666666
Q ss_pred hHHHHHHHHHHHH
Q 007407 585 VPATRDILQEAYA 597 (605)
Q Consensus 585 ~~~Ar~il~kAl~ 597 (605)
+++|.++|++.-+
T Consensus 191 ~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 191 ADKVYKTLQRLRD 203 (501)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665443
No 214
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.99 E-value=2.8e-05 Score=64.74 Aligned_cols=73 Identities=11% Similarity=-0.013 Sum_probs=67.3
Q ss_pred cCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCC
Q 007407 531 FLTKKNIWLKAAQLEKSYGC---RESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSE 603 (605)
Q Consensus 531 ~P~~~~~w~~la~l~~~~g~---~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~ 603 (605)
+|+++.+|..+|.++...++ .++|..+|++|+..+|+++..++++|..+++.|++++|..+|+++++.+|.++
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 68999999999999976655 68999999999999999999999999999999999999999999999999854
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.85 E-value=0.00075 Score=70.14 Aligned_cols=154 Identities=10% Similarity=0.056 Sum_probs=106.4
Q ss_pred HHHHHHhCCCCHHHHHHHHHh---------hcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 007407 385 LHRAVECCPLDVELWLALVRL---------ETYGVARSVLNKARKKLPKERAIWIAAAKLEANGNTSMVGKIIERGIRAL 455 (605)
Q Consensus 385 l~rAl~~~P~~~~lw~aLa~l---------e~~e~A~~vL~~al~~~p~~~~iwi~~a~Le~~g~~~~a~~i~~~al~~~ 455 (605)
..++....|.+.++|-.+.+- +....|+..|++|++..|+...+|..++... + .+...
T Consensus 183 ~~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~-----------~--~~~~~ 249 (372)
T 3ly7_A 183 QETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVD-----------I--VRHSQ 249 (372)
T ss_dssp HHHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-----------H--HHHHH
T ss_pred HHHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-----------H--HHhcc
Confidence 345666788888877655431 2357899999999999999988887766432 0 00000
Q ss_pred ccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH
Q 007407 456 QGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKK 535 (605)
Q Consensus 456 p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~ 535 (605)
.. .... +... ...+.... .++..+|. ...+|..++..+...|++++|+..+++|+.++|+ .
T Consensus 250 ~~----~~~~-~~~~---------l~~a~~a~-~a~~~~~~---~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~ 310 (372)
T 3ly7_A 250 HP----LDEK-QLAA---------LNTEIDNI-VTLPELNN---LSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-W 310 (372)
T ss_dssp SC----CCHH-HHHH---------HHHHHHHH-HTCGGGTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-H
T ss_pred CC----Cchh-hHHH---------HHHHHHHH-HhcccCCc---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-H
Confidence 00 0111 1100 01111111 22344555 6777877777777789999999999999999975 6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 007407 536 NIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEV 570 (605)
Q Consensus 536 ~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~ 570 (605)
..|..+|.++.-.|++++|.+.|++|+..+|..+.
T Consensus 311 ~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 311 LNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 78889999999999999999999999999997654
No 216
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.84 E-value=0.00016 Score=65.49 Aligned_cols=87 Identities=9% Similarity=-0.041 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCChHHHHHH
Q 007407 517 IETARAIFSPACTVFLTKKNIWLKAAQLEKSYG---CRESLIALLRKAVTYC-P-QAEVLWLMGAKEKWLAGDVPATRDI 591 (605)
Q Consensus 517 ~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g---~~e~A~~~lekAl~~~-P-~~~~l~l~~a~~~~~~gd~~~Ar~i 591 (605)
+..++..|.+.+...|.+..+.+.+|+.+.+.. +.++++.+|+..+... | ++.+.++.+|..+++.|++++|+.+
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 355677777777777777788888888887766 4557888888888777 6 4567777777777778888888888
Q ss_pred HHHHHHHCCCCC
Q 007407 592 LQEAYAAIPNSE 603 (605)
Q Consensus 592 l~kAl~~~P~~~ 603 (605)
+++++++.|+|.
T Consensus 94 ~~~lL~ieP~n~ 105 (152)
T 1pc2_A 94 VRGLLQTEPQNN 105 (152)
T ss_dssp HHHHHHHCTTCH
T ss_pred HHHHHhcCCCCH
Confidence 888888888763
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.82 E-value=0.00018 Score=77.14 Aligned_cols=98 Identities=13% Similarity=0.037 Sum_probs=77.9
Q ss_pred HcCCHHHHHHHHHHHHHh-----CCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----CCC---HHHHHHHH
Q 007407 476 RAGSVVTCVAIITNTIEI-----GVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVF-----LTK---KNIWLKAA 542 (605)
Q Consensus 476 ~~g~~~~A~~i~~~al~~-----~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~-----P~~---~~~w~~la 542 (605)
..|.+++|..++++++.+ +|++++-..++..++..|..+|++++|..+|+++|.+. |++ ...+..+|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 456778888888888774 66666677778888999999999999999999998762 444 45678889
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHH
Q 007407 543 QLEKSYGCRESLIALLRKAVTY-----CPQAEVLWL 573 (605)
Q Consensus 543 ~l~~~~g~~e~A~~~lekAl~~-----~P~~~~l~l 573 (605)
.++..+|++++|..+|++|+.+ -|+||.+-.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 9999999999999999999876 477776643
No 218
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.80 E-value=0.00039 Score=61.84 Aligned_cols=110 Identities=8% Similarity=0.009 Sum_probs=88.9
Q ss_pred CHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH----cC
Q 007407 440 NTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKK----RG 515 (605)
Q Consensus 440 ~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~----~g 515 (605)
++.+|...|+++.+.... ... ++..+...+.++.|...|+++...+ +...++.++.++.. .+
T Consensus 10 d~~~A~~~~~~aa~~g~~-------~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g-----~~~a~~~Lg~~y~~G~g~~~ 75 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEM-------FGC--LSLVSNSQINKQKLFQYLSKACELN-----SGNGCRFLGDFYENGKYVKK 75 (138)
T ss_dssp HHHHHHHHHHHHHHTTCT-------THH--HHHHTCTTSCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHCSSSCC
T ss_pred CHHHHHHHHHHHHcCCCH-------hhh--HHHHHHcCCCHHHHHHHHHHHHcCC-----CHHHHHHHHHHHHcCCCCCc
Confidence 467788888888765321 122 6666666667778889999988874 56778888888888 78
Q ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Q 007407 516 SIETARAIFSPACTVFLTKKNIWLKAAQLEKS----YGCRESLIALLRKAVTYC 565 (605)
Q Consensus 516 ~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~----~g~~e~A~~~lekAl~~~ 565 (605)
++++|+..|+++.+. +++.+++.++.++.. .+++++|+..|++|.+..
T Consensus 76 d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 76 DLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 999999999999886 789999999999998 889999999999999874
No 219
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.75 E-value=7.3e-05 Score=80.17 Aligned_cols=86 Identities=13% Similarity=-0.032 Sum_probs=74.0
Q ss_pred HcCCHHHHHHHHHHHHHh-----cCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH---HHHHHH
Q 007407 513 KRGSIETARAIFSPACTV-----FLTKK---NIWLKAAQLEKSYGCRESLIALLRKAVTY-----CPQAEV---LWLMGA 576 (605)
Q Consensus 513 ~~g~~~~A~~i~~~al~~-----~P~~~---~~w~~la~l~~~~g~~e~A~~~lekAl~~-----~P~~~~---l~l~~a 576 (605)
..|++++|..+|+++|++ .|+++ ..+..+|.+|...|++++|+.++++++.. -|+|+. .+..+|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 468899999999999986 35554 56778899999999999999999999976 366755 467788
Q ss_pred HHHHHcCChHHHHHHHHHHHHH
Q 007407 577 KEKWLAGDVPATRDILQEAYAA 598 (605)
Q Consensus 577 ~~~~~~gd~~~Ar~il~kAl~~ 598 (605)
.+++.+|++++|..+|++|+++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHH
Confidence 8999999999999999999986
No 220
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.67 E-value=0.00039 Score=58.61 Aligned_cols=76 Identities=8% Similarity=-0.070 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 007407 501 KRTWVADVEECKKRGSIETARAIFSPACTVF-------LTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWL 573 (605)
Q Consensus 501 ~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~-------P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l 573 (605)
..-++..|..+...+++..|...|+.|++.. +....++..+|.++.+.|+++.|+.++++|+...|+++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 4456777888888888888888888888764 245788888888999999999999999999988898877765
Q ss_pred HHH
Q 007407 574 MGA 576 (605)
Q Consensus 574 ~~a 576 (605)
.++
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 554
No 221
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.65 E-value=0.00061 Score=72.88 Aligned_cols=102 Identities=12% Similarity=0.018 Sum_probs=82.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHh-----CCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----CCC---HHHHH
Q 007407 473 VADRAGSVVTCVAIITNTIEI-----GVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVF-----LTK---KNIWL 539 (605)
Q Consensus 473 ~~e~~g~~~~A~~i~~~al~~-----~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~-----P~~---~~~w~ 539 (605)
.+..+|.+++|...+++++.+ +|+++.-..++..++..|...|++++|..+|++++... |++ ...++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 344677888899999998874 56666677788889999999999999999999999763 444 45688
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHH
Q 007407 540 KAAQLEKSYGCRESLIALLRKAVTY-----CPQAEVLWLM 574 (605)
Q Consensus 540 ~la~l~~~~g~~e~A~~~lekAl~~-----~P~~~~l~l~ 574 (605)
.+|.++...|++++|+.+|++|+.+ -|+||.+-..
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 8999999999999999999999876 4788766433
No 222
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.63 E-value=0.00018 Score=77.03 Aligned_cols=91 Identities=15% Similarity=0.027 Sum_probs=77.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhc-----CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH---H
Q 007407 508 VEECKKRGSIETARAIFSPACTVF-----LTK---KNIWLKAAQLEKSYGCRESLIALLRKAVTY-----CPQAEV---L 571 (605)
Q Consensus 508 a~~~~~~g~~~~A~~i~~~al~~~-----P~~---~~~w~~la~l~~~~g~~e~A~~~lekAl~~-----~P~~~~---l 571 (605)
+..+...|++++|+.+|+++++.. |++ ..++..++.++...|++++|+.++++++.. -|+||. .
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444567899999999999999762 555 466888899999999999999999999976 366655 4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007407 572 WLMGAKEKWLAGDVPATRDILQEAYAA 598 (605)
Q Consensus 572 ~l~~a~~~~~~gd~~~Ar~il~kAl~~ 598 (605)
+..+|.+++.+|++++|...|++|+++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 677889999999999999999999976
No 223
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.57 E-value=0.0066 Score=66.15 Aligned_cols=153 Identities=10% Similarity=0.066 Sum_probs=94.5
Q ss_pred hcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH-HcC---------CHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHH
Q 007407 406 ETYGVARSVLNKARKKL-PKERAIWIAAAKLE-ANG---------NTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVA 474 (605)
Q Consensus 406 e~~e~A~~vL~~al~~~-p~~~~iwi~~a~Le-~~g---------~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~ 474 (605)
++.++|..+|+++.+.. +-+...|..+.... ..+ ..+.|..+|++... .|+.++...|-.....+
T Consensus 40 G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~----~G~~Pd~~tyn~lI~~~ 115 (501)
T 4g26_A 40 GDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIV----DKVVPNEATFTNGARLA 115 (501)
T ss_dssp CCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHH----TTCCCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHH
Confidence 45555666665555442 22333343333222 211 24556666665543 34445666677777777
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHcCCHHH
Q 007407 475 DRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVF-LTKKNIWLKAAQLEKSYGCRES 553 (605)
Q Consensus 475 e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~-P~~~~~w~~la~l~~~~g~~e~ 553 (605)
-+.|.++.|..+++.....+.. | +..+|......+.+.|++++|..+|++..+.. .-+...|..+...+.+.|+.++
T Consensus 116 ~~~g~~~~A~~l~~~M~~~g~~-P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~ 193 (501)
T 4g26_A 116 VAKDDPEMAFDMVKQMKAFGIQ-P-RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADK 193 (501)
T ss_dssp HHHTCHHHHHHHHHHHHHTTCC-C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HhcCCHHHHHHHHHHHHHcCCC-C-ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHH
Confidence 7777777777777777765533 2 45566677777777788888888887776653 2244667777777778888888
Q ss_pred HHHHHHHHHHh
Q 007407 554 LIALLRKAVTY 564 (605)
Q Consensus 554 A~~~lekAl~~ 564 (605)
|.++|++.-+.
T Consensus 194 A~~ll~~Mr~~ 204 (501)
T 4g26_A 194 VYKTLQRLRDL 204 (501)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88888777654
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.55 E-value=0.0004 Score=58.54 Aligned_cols=70 Identities=6% Similarity=-0.035 Sum_probs=63.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCC
Q 007407 534 KKNIWLKAAQLEKSYGCRESLIALLRKAVTYC-------PQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSE 603 (605)
Q Consensus 534 ~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~-------P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~ 603 (605)
+..-.+.+|..+...|++..|...|+.|+... +..+.++..+|..+++.|+++.|...+++|++..|+++
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~ 80 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ 80 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence 45667889999999999999999999999874 24578999999999999999999999999999999975
No 225
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.05 E-value=0.0028 Score=55.39 Aligned_cols=90 Identities=9% Similarity=-0.064 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhc-C-CCHHHHHHHHHHHHHcCCHHHH
Q 007407 480 VVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIET---ARAIFSPACTVF-L-TKKNIWLKAAQLEKSYGCRESL 554 (605)
Q Consensus 480 ~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~---A~~i~~~al~~~-P-~~~~~w~~la~l~~~~g~~e~A 554 (605)
...++..|...+..++. +..+-+.+|-.++...+... ++.+++..+... | ......+.+|..+.+.|++++|
T Consensus 17 l~~~~~~y~~e~~~~~~---s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSV---SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHSCC---CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhccCCC---cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 55667777777666554 56666777777777665555 777777777665 5 4567777777777788888888
Q ss_pred HHHHHHHHHhCCCCHHHH
Q 007407 555 IALLRKAVTYCPQAEVLW 572 (605)
Q Consensus 555 ~~~lekAl~~~P~~~~l~ 572 (605)
+.+++..|+..|++..+.
T Consensus 94 ~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp HHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHhCCCCHHHH
Confidence 888888888888776553
No 226
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.71 E-value=0.017 Score=50.42 Aligned_cols=85 Identities=9% Similarity=-0.024 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCChHHHHHHH
Q 007407 518 ETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRES---LIALLRKAVTYC-P-QAEVLWLMGAKEKWLAGDVPATRDIL 592 (605)
Q Consensus 518 ~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~---A~~~lekAl~~~-P-~~~~l~l~~a~~~~~~gd~~~Ar~il 592 (605)
..++..|...+...+.+...-+.+|+.+....+... ++.+++..+... | ..-...+.+|..+++.|++++|+..+
T Consensus 18 ~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~ 97 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 97 (126)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 445555555555555556666666666665554433 566666655554 3 23344455555566666666666666
Q ss_pred HHHHHHCCCC
Q 007407 593 QEAYAAIPNS 602 (605)
Q Consensus 593 ~kAl~~~P~~ 602 (605)
+..++..|+|
T Consensus 98 ~~lL~~eP~n 107 (126)
T 1nzn_A 98 RGLLQTEPQN 107 (126)
T ss_dssp HHHHHHCTTC
T ss_pred HHHHHhCCCC
Confidence 6666666655
No 227
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.31 E-value=0.019 Score=52.36 Aligned_cols=91 Identities=11% Similarity=-0.064 Sum_probs=55.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC----
Q 007407 504 WVADVEECKKRGSIETARAIFSPACTVFLTK---------KNIWLKAAQLEKSYGCRESLIALLRKAVTYC---PQ---- 567 (605)
Q Consensus 504 ~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~---------~~~w~~la~l~~~~g~~e~A~~~lekAl~~~---P~---- 567 (605)
++..+..+...+.|+.|+.+...++....++ ..++..+|.++...+++..|...|++||... ++
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3344455555666666666665554443211 2355555666666666666666666665432 11
Q ss_pred ------------------CHHHHHHHHHHHHHcCChHHHHHHHHH
Q 007407 568 ------------------AEVLWLMGAKEKWLAGDVPATRDILQE 594 (605)
Q Consensus 568 ------------------~~~l~l~~a~~~~~~gd~~~Ar~il~k 594 (605)
...+-+..|.++.+.+++.+|..+|+.
T Consensus 103 ~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 103 RPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp --------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred cccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 125667789999999999999999864
No 228
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=95.48 E-value=0.42 Score=44.92 Aligned_cols=119 Identities=7% Similarity=0.015 Sum_probs=77.5
Q ss_pred HHHHHHHHHHh---CCCC-HHHHHHHHH-HH-H--cCCH---HHHH-HHHHHHHHHhccCcc----cccHHHHHHHHHHH
Q 007407 411 ARSVLNKARKK---LPKE-RAIWIAAAK-LE-A--NGNT---SMVG-KIIERGIRALQGEEV----VIDRDTWMKEAEVA 474 (605)
Q Consensus 411 A~~vL~~al~~---~p~~-~~iwi~~a~-Le-~--~g~~---~~a~-~i~~~al~~~p~~~~----~~~~~~wl~~A~~~ 474 (605)
.+..++..+.. ..+| .++|..+.+ ++ . .|.. .... .++++++..+..... +--..+|+.+|..+
T Consensus 11 ~r~~fE~~l~~~l~~~dDPL~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~ 90 (202)
T 3esl_A 11 TKIAYEQRLLNDLEDMDDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIWYINLF 90 (202)
T ss_dssp HHHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCchHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhh
Confidence 34455555554 2233 467888775 32 1 2222 2344 788888887765422 22457888888775
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 007407 475 DRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVF 531 (605)
Q Consensus 475 e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~ 531 (605)
..++...+..+|..+...+.- ......|..+|..+...|++.+|..+|..+++..
T Consensus 91 -~~~~~~~p~~if~~L~~~~IG-~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 91 -LSNNFHESENTFKYMFNKGIG-TKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp -STTCHHHHHHHHHHHHHHTSS-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred -cccccCCHHHHHHHHHHCCCc-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 233456778888887776544 2267788888888888899999999998888765
No 229
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=95.39 E-value=0.43 Score=49.98 Aligned_cols=94 Identities=14% Similarity=-0.037 Sum_probs=68.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCC---C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC----HHHH
Q 007407 506 ADVEECKKRGSIETARAIFSPACTVFLT---K---KNIWLKAAQLEKSYGCRESLIALLRKAVTYC---PQA----EVLW 572 (605)
Q Consensus 506 ~~a~~~~~~g~~~~A~~i~~~al~~~P~---~---~~~w~~la~l~~~~g~~e~A~~~lekAl~~~---P~~----~~l~ 572 (605)
.++.++...|++.+|..++.+.++.... . ..++..-..++...+++..+...|.+|.... +-+ ..+.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 6788888999999998888888775432 2 3455556777788899999999998886542 122 3345
Q ss_pred HHHHHHHH-HcCChHHHHHHHHHHHHHC
Q 007407 573 LMGAKEKW-LAGDVPATRDILQEAYAAI 599 (605)
Q Consensus 573 l~~a~~~~-~~gd~~~Ar~il~kAl~~~ 599 (605)
...|..+. ..+++..|...|-.++...
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f 211 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGF 211 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence 55566777 6899999999988887543
No 230
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.75 E-value=0.12 Score=45.23 Aligned_cols=73 Identities=4% Similarity=-0.142 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 007407 500 KKRTWVADVEECKKRGSI---ETARAIFSPACTVFL-TKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLW 572 (605)
Q Consensus 500 ~~~~~~~~a~~~~~~g~~---~~A~~i~~~al~~~P-~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~ 572 (605)
...+-+.+|-.+++..+. .+++.+++.+++..| .....++.+|.-+.+.|++++|+++.+..++..|++..+.
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 567777888777776644 468888999998888 4688999999999999999999999999999999886653
No 231
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=94.56 E-value=0.62 Score=43.76 Aligned_cols=124 Identities=7% Similarity=-0.033 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHH-hccCcccccHHHHHHHHHHHHHc---CCH--H-HHH-HHHHHHHHhCCC------chhhHHHHHH
Q 007407 441 TSMVGKIIERGIRA-LQGEEVVIDRDTWMKEAEVADRA---GSV--V-TCV-AIITNTIEIGVD------EEDKKRTWVA 506 (605)
Q Consensus 441 ~~~a~~i~~~al~~-~p~~~~~~~~~~wl~~A~~~e~~---g~~--~-~A~-~i~~~al~~~p~------~~~~~~~~~~ 506 (605)
.......|++.|.. +... .+..+.|+.+....+.. |.. . .-. .++++++....+ ++-...+|+.
T Consensus 8 l~~~r~~fE~~l~~~l~~~--dDPL~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~ 85 (202)
T 3esl_A 8 LNQTKIAYEQRLLNDLEDM--DDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIW 85 (202)
T ss_dssp HHHHHHHHHHHHHHTGGGC--SCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccC--CCchHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHH
Confidence 55667788888887 2222 34678999998776643 332 1 123 688888875332 3446889999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 007407 507 DVEECKKRGSIETARAIFSPACTVF--LTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQ 567 (605)
Q Consensus 507 ~a~~~~~~g~~~~A~~i~~~al~~~--P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~ 567 (605)
++..+ ..++...++.+|....... -....+|..+|.++...|++.+|.++|+.+++.+..
T Consensus 86 Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~ 147 (202)
T 3esl_A 86 YINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCR 147 (202)
T ss_dssp HHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 98875 3445679999999888654 557889999999999999999999999999998743
No 232
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.54 E-value=0.83 Score=42.12 Aligned_cols=125 Identities=14% Similarity=0.039 Sum_probs=63.5
Q ss_pred HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCC
Q 007407 437 ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGS 516 (605)
Q Consensus 437 ~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~ 516 (605)
+.|+++.|..+.+.. .+...|...+..+...|++.-|..+|.++=.. . ....+|...|+
T Consensus 17 ~lg~l~~A~e~a~~l----------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~--------~---~L~~Ly~~tg~ 75 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL----------NDSITWERLIQEALAQGNASLAEMIYQTQHSF--------D---KLSFLYLVTGD 75 (177)
T ss_dssp HTTCHHHHHHHHHHH----------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH--------H---HHHHHHHHHTC
T ss_pred hcCCHHHHHHHHHHh----------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH--------H---HHHHHHHHhCC
Confidence 566666666554332 25666777777777777777666666655211 1 11123444565
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 007407 517 IETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEA 595 (605)
Q Consensus 517 ~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kA 595 (605)
.+.-..+-+.+.... +..+ ....+...|+++++.++|.+. ...+..++ .|+ ..|--+.|.++++.+
T Consensus 76 ~e~L~kla~iA~~~g--~~n~---af~~~l~lGdv~~~i~lL~~~----~r~~eA~~-~A~---t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 76 VNKLSKMQNIAQTRE--DFGS---MLLNTFYNNSTKERSSIFAEG----GSLPLAYA-VAK---ANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHHHTT--CHHH---HHHHHHHHTCHHHHHHHHHHT----TCHHHHHH-HHH---HTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCc--cHHH---HHHHHHHcCCHHHHHHHHHHC----CChHHHHH-HHH---HcCcHHHHHHHHHHh
Confidence 555554444443321 2111 122344567777777777532 22222222 222 356666777776554
No 233
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=94.43 E-value=0.64 Score=41.74 Aligned_cols=113 Identities=11% Similarity=0.105 Sum_probs=62.9
Q ss_pred HHHHHHHHHHhCC-CC-HHHHHHHHH-HH-H--cCCHHHHHHHHHHHHHHhccCcc----cccHHHHHHHHHHHHHcCCH
Q 007407 411 ARSVLNKARKKLP-KE-RAIWIAAAK-LE-A--NGNTSMVGKIIERGIRALQGEEV----VIDRDTWMKEAEVADRAGSV 480 (605)
Q Consensus 411 A~~vL~~al~~~p-~~-~~iwi~~a~-Le-~--~g~~~~a~~i~~~al~~~p~~~~----~~~~~~wl~~A~~~e~~g~~ 480 (605)
++..++..+.... +| .++|..+.+ ++ . .|. .....++++++..+..... +--..+|+.+|..+
T Consensus 9 ~~~~fE~~i~~y~gdDPL~~w~~YI~W~e~~~P~g~-~~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~------ 81 (152)
T 4a1g_A 9 VLQMLEAHMQSYKGNDPLGEWERYIQWVEENFPENK-EYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYN------ 81 (152)
T ss_dssp HHHHHHHHTTSCCSSCHHHHHHHHHHHHHTTCSSCT-HHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTB------
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCc-hhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhc------
Confidence 4444555454432 23 356777775 33 1 232 2355677777777654321 12346777776543
Q ss_pred HHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 007407 481 VTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVF 531 (605)
Q Consensus 481 ~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~ 531 (605)
..+..+|..+...+.- ......|..+|..+...|++.+|..+|..+++..
T Consensus 82 ~dp~~if~~L~~~~IG-~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIG-TLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp SCHHHHHHHHHTTTTT-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHCCCc-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 2256666666654433 1255666667777777777777777777776654
No 234
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.18 E-value=0.62 Score=41.26 Aligned_cols=72 Identities=4% Similarity=-0.117 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 007407 500 KKRTWVADVEECKKRGSI---ETARAIFSPACTVFLT-KKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVL 571 (605)
Q Consensus 500 ~~~~~~~~a~~~~~~g~~---~~A~~i~~~al~~~P~-~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l 571 (605)
...+-+.+|-.++...+. .+++.+++..+...|. ....++.+|.-+.+.|++++|+++.+..|+..|++..+
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 455666666666665543 3566677777776663 55666777777777777777777777777777766544
No 235
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.05 E-value=0.27 Score=55.77 Aligned_cols=119 Identities=13% Similarity=0.128 Sum_probs=81.8
Q ss_pred cCC-HHHHHHHHHHHHHHhccCcccccHHHHHHHHH--HHHHcC-CHHHHHHHHHHHHHh--------CCCchh------
Q 007407 438 NGN-TSMVGKIIERGIRALQGEEVVIDRDTWMKEAE--VADRAG-SVVTCVAIITNTIEI--------GVDEED------ 499 (605)
Q Consensus 438 ~g~-~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~--~~e~~g-~~~~A~~i~~~al~~--------~p~~~~------ 499 (605)
.|+ .+.+..+|++.....|... ..+..+. ..+..+ .--+|..++.++++. .+.+.+
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~~------~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~ 334 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIHD------IYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMN 334 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGGH------HHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCchh------HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccC
Confidence 444 6788899999888776532 2222222 222222 234577777777742 111111
Q ss_pred -hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 007407 500 -KKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCP 566 (605)
Q Consensus 500 -~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P 566 (605)
...++...++++...|+++-|..+-++|+..-|.....|..|+.+|...|+++.|+-.+ ..||
T Consensus 335 ~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtL----NScP 398 (754)
T 4gns_B 335 CMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAI----NSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHH----HHSC
T ss_pred cchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHH----hcCC
Confidence 12345556888899999999999999999999999999999999999999999998654 4678
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.00 E-value=0.41 Score=54.28 Aligned_cols=116 Identities=14% Similarity=0.123 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHH-HHHHH-HHHcC-CHHHHHHHHHHHHHHhcc-------Ccc------cccHHHHHHHH
Q 007407 408 YGVARSVLNKARKKLPKERAIW-IAAAK-LEANG-NTSMVGKIIERGIRALQG-------EEV------VIDRDTWMKEA 471 (605)
Q Consensus 408 ~e~A~~vL~~al~~~p~~~~iw-i~~a~-Le~~g-~~~~a~~i~~~al~~~p~-------~~~------~~~~~~wl~~A 471 (605)
++.|..++++..+..|...-++ +.+.. ++..+ .--++.+++.++++.+.. ... +....+....|
T Consensus 265 ~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa 344 (754)
T 4gns_B 265 VDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQT 344 (754)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHH
Confidence 5779999999999988754322 22222 33333 355788899999876421 100 11233555678
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007407 472 EVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSP 526 (605)
Q Consensus 472 ~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~ 526 (605)
.++...|+++-|..+.++++...|. ....|..+|..|+..|+++.|.-.+..
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPs---eF~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALD---SFESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSS---CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhccCcHHHHHHHHHHHHhcCch---hhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 8999999999999999999999998 899999999999999999999966543
No 237
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.00 E-value=0.65 Score=48.48 Aligned_cols=107 Identities=15% Similarity=0.105 Sum_probs=50.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCc--hhh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 007407 471 AEVADRAGSVVTCVAIITNTIEIGVDE--EDK-KRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKS 547 (605)
Q Consensus 471 A~~~e~~g~~~~A~~i~~~al~~~p~~--~~~-~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~ 547 (605)
+......|....|...+..++..--.+ ++. ...|.... +.-++... ..+...++..+..
T Consensus 122 ~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~------------r~~l~~~~------~~a~~~~~~~~l~ 183 (388)
T 2ff4_A 122 GVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPF------------ATALVEDK------VLAHTAKAEAEIA 183 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHH------------HHHHHHHH------HHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHH------------HHHHHHHH------HHHHHHHHHHHHH
Confidence 333445688899999999999874221 111 01121110 00011000 0122333444445
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 007407 548 YGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEA 595 (605)
Q Consensus 548 ~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kA 595 (605)
.|++.++...++.++..+|-++.+|..+...++..|+..+|...|++.
T Consensus 184 ~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 184 CGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555555555555555555555555555555555555555555444
No 238
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.84 E-value=0.31 Score=44.40 Aligned_cols=108 Identities=11% Similarity=0.015 Sum_probs=77.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh---CCC--c-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---CCC-------
Q 007407 471 AEVADRAGSVVTCVAIITNTIEI---GVD--E-EDKKRTWVADVEECKKRGSIETARAIFSPACTVF---LTK------- 534 (605)
Q Consensus 471 A~~~e~~g~~~~A~~i~~~al~~---~p~--~-~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~---P~~------- 534 (605)
...+...|.++.|+.+...++.. +|+ . .....+.+.+|+.+...++|..|...|++||... |..
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~ 106 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPST 106 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 34455677788888777776654 222 0 1245567778889999999999999999987542 222
Q ss_pred ---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007407 535 ---------------KNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEK 579 (605)
Q Consensus 535 ---------------~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~ 579 (605)
.++-+..+.++.+.|++++|+.+++..-.. -..+.+-+++|++|
T Consensus 107 ~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k-~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 107 GNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR-QRTPKINMLLANLY 165 (167)
T ss_dssp ----------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG-GCCHHHHHHHHHHC
T ss_pred cccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch-hcCHHHHHHHHHHh
Confidence 267788999999999999999998842111 14588999999876
No 239
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=93.60 E-value=0.68 Score=44.22 Aligned_cols=113 Identities=15% Similarity=0.186 Sum_probs=68.7
Q ss_pred HHHHHHHHHhC---CCCHHHHHHHHH-HH-H--cCC--HHHHHHHHHHHHHHhccCcc----cccHHHHHHHHHHHHHcC
Q 007407 412 RSVLNKARKKL---PKERAIWIAAAK-LE-A--NGN--TSMVGKIIERGIRALQGEEV----VIDRDTWMKEAEVADRAG 478 (605)
Q Consensus 412 ~~vL~~al~~~---p~~~~iwi~~a~-Le-~--~g~--~~~a~~i~~~al~~~p~~~~----~~~~~~wl~~A~~~e~~g 478 (605)
+..++..+... .+-.++|+.+.+ ++ . .|. ......++++++..+..... +--..+|+.+|..+
T Consensus 55 r~~fE~~i~~~~~~dDPL~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~~---- 130 (223)
T 4aez_C 55 RMGHERKIETSESLDDPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNYI---- 130 (223)
T ss_dssp HHHHHHHHHHGGGSSCTHHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHhcccCCCChHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHcc----
Confidence 33444444432 334567887775 33 2 222 22355788888888765422 12357788877642
Q ss_pred CHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 007407 479 SVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVF 531 (605)
Q Consensus 479 ~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~ 531 (605)
.....+|..+...+.- .....+|..+|..+...|++.+|..+|..+++..
T Consensus 131 --~~p~~if~~L~~~~IG-~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 131 --DEPVELFSFLAHHHIG-QESSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp --SCHHHHHHHHHHTTCS-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred --CCHHHHHHHHHHCCcc-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 3555677777665443 2256677777888888888888888888877764
No 240
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.46 E-value=1.1 Score=46.66 Aligned_cols=107 Identities=11% Similarity=0.082 Sum_probs=78.3
Q ss_pred HcCCHHHHHHHHHHHHHHhccCccccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcC
Q 007407 437 ANGNTSMVGKIIERGIRALQGEEVVID-RDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRG 515 (605)
Q Consensus 437 ~~g~~~~a~~i~~~al~~~p~~~~~~~-~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g 515 (605)
..|+...+...+.+|+......-.+.. ...|.... +..++.. ...+....+..+...|
T Consensus 127 ~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~------------r~~l~~~---------~~~a~~~~~~~~l~~g 185 (388)
T 2ff4_A 127 AAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPF------------ATALVED---------KVLAHTAKAEAEIACG 185 (388)
T ss_dssp HTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHH------------HHHHHHH---------HHHHHHHHHHHHHHTT
T ss_pred hCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHH------------HHHHHHH---------HHHHHHHHHHHHHHCC
Confidence 468889999999999988754321111 12243211 1112111 3344455677788899
Q ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007407 516 SIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTY 564 (605)
Q Consensus 516 ~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~ 564 (605)
++.+|...+..++..+|.+..+|..+..++...|+..+|+..|+++...
T Consensus 186 ~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~ 234 (388)
T 2ff4_A 186 RASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTT 234 (388)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988653
No 241
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.43 E-value=0.53 Score=41.18 Aligned_cols=82 Identities=13% Similarity=0.040 Sum_probs=64.1
Q ss_pred ccHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH
Q 007407 462 IDRDTWMKEAEVADRAGSV---VTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIW 538 (605)
Q Consensus 462 ~~~~~wl~~A~~~e~~g~~---~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w 538 (605)
.+...-+.+|-.+.++.+. ..++.+++.++..+|+ ...+.++.+|-.+.+.|++++|+...+.+|+..|++..+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~--~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES--RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGG--GHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcc--hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 4778888888888887754 4677888888887764 2567777888888999999999999999999999998776
Q ss_pred HHHHHHH
Q 007407 539 LKAAQLE 545 (605)
Q Consensus 539 ~~la~l~ 545 (605)
.....+.
T Consensus 116 ~Lk~~Ie 122 (134)
T 3o48_A 116 ALKSMVE 122 (134)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6544444
No 242
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=93.37 E-value=0.98 Score=44.43 Aligned_cols=121 Identities=12% Similarity=0.030 Sum_probs=86.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCH
Q 007407 472 EVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCR 551 (605)
Q Consensus 472 ~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~ 551 (605)
....+.|+++++.+.+...+...|. +......+.+++.-.|+++.|..-++.+.+.+|.....-..|..+..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~---da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~----- 76 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPK---DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVK----- 76 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH-----
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCc---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHH-----
Confidence 4456788999999999999999988 77777888888999999999999999999999987544333222211
Q ss_pred HHHHHHHHHHHHh---CC---CCHHHHHHH---HHHHHHcCChHHHHHHHHHHHHHCCCCC
Q 007407 552 ESLIALLRKAVTY---CP---QAEVLWLMG---AKEKWLAGDVPATRDILQEAYAAIPNSE 603 (605)
Q Consensus 552 e~A~~~lekAl~~---~P---~~~~l~l~~---a~~~~~~gd~~~Ar~il~kAl~~~P~~~ 603 (605)
-+.++..+.. .| ..+.-|+.. +......|+.++|...-.+|++.-|...
T Consensus 77 ---aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~ 134 (273)
T 1zbp_A 77 ---AAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG 134 (273)
T ss_dssp ---HHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred ---HHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccC
Confidence 1233333332 12 333445443 3344458999999999999999988653
No 243
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=93.19 E-value=2.4 Score=40.47 Aligned_cols=117 Identities=14% Similarity=0.071 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHc---CC--HHHHHHHHHHHHHhCCC------chhhHHHHHHHHHHH
Q 007407 443 MVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRA---GS--VVTCVAIITNTIEIGVD------EEDKKRTWVADVEEC 511 (605)
Q Consensus 443 ~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~---g~--~~~A~~i~~~al~~~p~------~~~~~~~~~~~a~~~ 511 (605)
.....|+..|...... .+..+.|+.+....+.. |. ...-..++++++....+ ++-...+|+.++..+
T Consensus 53 ~~r~~fE~~i~~~~~~--dDPL~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~~ 130 (223)
T 4aez_C 53 KERMGHERKIETSESL--DDPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNYI 130 (223)
T ss_dssp HHHHHHHHHHHHGGGS--SCTHHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcccC--CCChHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHcc
Confidence 4556677777763221 24578899888766653 32 11245788888876443 344688999988742
Q ss_pred HHcCCHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 007407 512 KKRGSIETARAIFSPACTVF--LTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQ 567 (605)
Q Consensus 512 ~~~g~~~~A~~i~~~al~~~--P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~ 567 (605)
+.++.+|....... -....+|..+|.++...|++.+|.++|+.+++.+..
T Consensus 131 ------~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 182 (223)
T 4aez_C 131 ------DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAK 182 (223)
T ss_dssp ------SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCB
T ss_pred ------CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 46778998887654 557899999999999999999999999999998844
No 244
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=93.16 E-value=0.76 Score=41.24 Aligned_cols=117 Identities=9% Similarity=0.079 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCc------hhhHHHHHHHHHHH
Q 007407 441 TSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRA---GSVVTCVAIITNTIEIGVDE------EDKKRTWVADVEEC 511 (605)
Q Consensus 441 ~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~---g~~~~A~~i~~~al~~~p~~------~~~~~~~~~~a~~~ 511 (605)
...+.+.|+..|..... .+..+.|..+....+.. |. ..-..++++++....++ +-...+|+.+++.+
T Consensus 6 ~~~~~~~fE~~i~~y~g---dDPL~~w~~YI~W~e~~~P~g~-~~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~ 81 (152)
T 4a1g_A 6 PENVLQMLEAHMQSYKG---NDPLGEWERYIQWVEENFPENK-EYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYN 81 (152)
T ss_dssp HHHHHHHHHHHTTSCCS---SCHHHHHHHHHHHHHTTCSSCT-HHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHHHcCCCc-hhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhc
Confidence 34555667777766532 34678999998777653 43 23557788887765442 33577888887653
Q ss_pred HHcCCHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 007407 512 KKRGSIETARAIFSPACTVF--LTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQ 567 (605)
Q Consensus 512 ~~~g~~~~A~~i~~~al~~~--P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~ 567 (605)
..++.+|....... -....+|..+|.++...|++.+|.++|+.+++.+..
T Consensus 82 ------~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 133 (152)
T 4a1g_A 82 ------SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAE 133 (152)
T ss_dssp ------SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred ------CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 33788888887653 456788899999999999999999999999998743
No 245
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=92.97 E-value=0.51 Score=42.97 Aligned_cols=113 Identities=11% Similarity=0.093 Sum_probs=80.7
Q ss_pred cccHHHHHHHHHHHHH---cCCHH-HHHHHHHHHHHhCCCc------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007407 461 VIDRDTWMKEAEVADR---AGSVV-TCVAIITNTIEIGVDE------EDKKRTWVADVEECKKRGSIETARAIFSPACTV 530 (605)
Q Consensus 461 ~~~~~~wl~~A~~~e~---~g~~~-~A~~i~~~al~~~p~~------~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~ 530 (605)
.+....|..+....+. .|... .-..++++++....++ +-...+|+.++..+ ..++.+|......
T Consensus 16 dDPL~~w~~yIkW~e~~~p~~~~~s~L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~------~~p~~if~~L~~~ 89 (164)
T 2wvi_A 16 NDPLDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC------NEPLDMYSYLHNQ 89 (164)
T ss_dssp SCTHHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC------SCHHHHHHHHHHT
T ss_pred CCChHHHHHHHHHHHHHCcCCCccchHHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc------CCHHHHHHHHHHC
Confidence 3568999999887765 23221 2356888888876552 33678899888764 3477888888765
Q ss_pred --cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Q 007407 531 --FLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQA-EVLWLMGAKEK 579 (605)
Q Consensus 531 --~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~-~~l~l~~a~~~ 579 (605)
.-....+|..+|.++...|++.+|.++|+.+++.+..- ..+--.+..+.
T Consensus 90 ~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L~~~~~~F~ 141 (164)
T 2wvi_A 90 GIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQSQHRQFQ 141 (164)
T ss_dssp TSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 45678999999999999999999999999999987433 33334444444
No 246
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.32 E-value=1.7 Score=38.51 Aligned_cols=78 Identities=13% Similarity=0.018 Sum_probs=57.6
Q ss_pred ccHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH
Q 007407 462 IDRDTWMKEAEVADRAGSV---VTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIW 538 (605)
Q Consensus 462 ~~~~~wl~~A~~~e~~g~~---~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w 538 (605)
.+...-+.+|-.+.++.+. ..+..+++.++..+|+ ......+.+|-.+.+.|+|.+|+.+.+.+|+..|++..+.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~--~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES--RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCS--THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcc--chhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 4777778888777777654 4567788888887765 2455566677778888888888888888888888887665
Q ss_pred HHH
Q 007407 539 LKA 541 (605)
Q Consensus 539 ~~l 541 (605)
...
T Consensus 115 ~Lk 117 (144)
T 1y8m_A 115 ALK 117 (144)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 247
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=92.25 E-value=2.5 Score=38.39 Aligned_cols=103 Identities=20% Similarity=0.284 Sum_probs=76.9
Q ss_pred CHHHHHHHHH-HH-Hc--CC-HHHHHHHHHHHHHHhccCcc----cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 007407 425 ERAIWIAAAK-LE-AN--GN-TSMVGKIIERGIRALQGEEV----VIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGV 495 (605)
Q Consensus 425 ~~~iwi~~a~-Le-~~--g~-~~~a~~i~~~al~~~p~~~~----~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p 495 (605)
-..+|..+.+ ++ .. |. ......++++++..+..... +--..+|+.+|..+ ..+..+|..+...+.
T Consensus 18 PL~~w~~yIkW~e~~~p~~~~~s~L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~------~~p~~if~~L~~~~I 91 (164)
T 2wvi_A 18 PLDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC------NEPLDMYSYLHNQGI 91 (164)
T ss_dssp THHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC------SCHHHHHHHHHHTTS
T ss_pred ChHHHHHHHHHHHHHCcCCCccchHHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCc
Confidence 3578999997 44 33 22 22467899999999876532 22468999998763 457788888887655
Q ss_pred CchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 007407 496 DEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTK 534 (605)
Q Consensus 496 ~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~ 534 (605)
- .....+|..+|..+...|++.+|..+|..+++..-.-
T Consensus 92 G-~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 92 G-VSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp S-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred c-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 4 2378889999999999999999999999999876443
No 248
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=91.50 E-value=4.7 Score=45.29 Aligned_cols=28 Identities=11% Similarity=0.095 Sum_probs=15.6
Q ss_pred CCHHHHHHHHHHH-HcCCHHHHHHHHHHH
Q 007407 424 KERAIWIAAAKLE-ANGNTSMVGKIIERG 451 (605)
Q Consensus 424 ~~~~iwi~~a~Le-~~g~~~~a~~i~~~a 451 (605)
.++..|..+|++. +.|+++.|...|.++
T Consensus 679 ~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 679 SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3455566666544 556666665555543
No 249
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=90.27 E-value=3 Score=46.95 Aligned_cols=102 Identities=23% Similarity=0.348 Sum_probs=59.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCH
Q 007407 472 EVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCR 551 (605)
Q Consensus 472 ~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~ 551 (605)
..+...|+++.|..+.+.. + +...|..+|+.+...++++.|..+|.++-. |..+..++...|+.
T Consensus 660 ~~~l~~~~~~~A~~~~~~~-----~---~~~~W~~la~~al~~~~~~~A~~~y~~~~d--------~~~l~~l~~~~~~~ 723 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDE-----S---AEMKWRALGDASLQRFNFKLAIEAFTNAHD--------LESLFLLHSSFNNK 723 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTC-----C---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC--------HHHHHHHHHHTTCH
T ss_pred ehhhhcCCHHHHHHHHHhh-----C---cHhHHHHHHHHHHHcCCHHHHHHHHHHccC--------hhhhHHHHHHcCCH
Confidence 3456678888888775322 2 678899999999999999999999987621 12233334445555
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 007407 552 ESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQE 594 (605)
Q Consensus 552 e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~k 594 (605)
+...++.+.+.... +. .....++++.|++++|.++|.+
T Consensus 724 ~~~~~~~~~a~~~~-~~----~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 724 EGLVTLAKDAETTG-KF----NLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHHHHHHHTT-CH----HHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-ch----HHHHHHHHHcCCHHHHHHHHHH
Confidence 55444444443321 11 1111123345555555555543
No 250
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=89.41 E-value=3.9 Score=47.78 Aligned_cols=96 Identities=5% Similarity=-0.128 Sum_probs=50.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCHHHHHHHH
Q 007407 467 WMKEAEVADRAGSVVTCVAIITNTIEI---GVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVF-LTKKNIWLKAA 542 (605)
Q Consensus 467 wl~~A~~~e~~g~~~~A~~i~~~al~~---~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~-P~~~~~w~~la 542 (605)
+..+...+-+.|.+++|..++...-.. +.. + +..+|..++..+.+.|++++|..+|++..+.- .=+...|..+.
T Consensus 130 ynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~-P-dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 130 LLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKL-L-TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTT-C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCC-C-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 344444555566666666666554321 111 1 34455555666666666666666666665432 11344455555
Q ss_pred HHHHHcCC-HHHHHHHHHHHHHh
Q 007407 543 QLEKSYGC-RESLIALLRKAVTY 564 (605)
Q Consensus 543 ~l~~~~g~-~e~A~~~lekAl~~ 564 (605)
..+.+.|+ .++|.++|++....
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHc
Confidence 55555554 35566666666554
No 251
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=89.37 E-value=22 Score=36.87 Aligned_cols=99 Identities=11% Similarity=-0.023 Sum_probs=45.7
Q ss_pred HHHHH-HcCCHHHHHHHHHHHHHHhccCcc-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCch-hhHHHH
Q 007407 432 AAKLE-ANGNTSMVGKIIERGIRALQGEEV-VIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIG----VDEE-DKKRTW 504 (605)
Q Consensus 432 ~a~Le-~~g~~~~a~~i~~~al~~~p~~~~-~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~----p~~~-~~~~~~ 504 (605)
++.+. ..|++.+|.+++.+..+.+..... ..-.++.+.....+...++...+++.|..+.... ++ | ....+.
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~-p~i~a~i~ 183 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCP-PKVQGALD 183 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC-HHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCC-HHHHHHHH
Confidence 34444 555555555555555555433110 1223444445555555555555555555544321 11 1 122223
Q ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHhc
Q 007407 505 VADVEECK-KRGSIETARAIFSPACTVF 531 (605)
Q Consensus 505 ~~~a~~~~-~~g~~~~A~~i~~~al~~~ 531 (605)
..-|..+. ..++|.+|...|-.+++.+
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f 211 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGF 211 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence 33344444 4555555555555555443
No 252
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=88.93 E-value=3.6 Score=37.78 Aligned_cols=103 Identities=16% Similarity=0.101 Sum_probs=73.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCH
Q 007407 472 EVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCR 551 (605)
Q Consensus 472 ~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~ 551 (605)
..+...|+++.|..+.+.+ + +...|-.+++.....|+++-|..+|.++ ++. -.+..+|...|+.
T Consensus 13 ~LAL~lg~l~~A~e~a~~l-----~---~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~-----~D~---~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL-----N---DSITWERLIQEALAQGNASLAEMIYQTQ-----HSF---DKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH-----C---CHHHHHHHHHHHHHTTCHHHHHHHHHHT-----TCH---HHHHHHHHHHTCH
T ss_pred HHHHhcCCHHHHHHHHHHh-----C---CHHHHHHHHHHHHHcCChHHHHHHHHHh-----CCH---HHHHHHHHHhCCH
Confidence 4556789999998887654 3 6788999999999999999999999877 332 2334466678888
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 007407 552 ESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEA 595 (605)
Q Consensus 552 e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kA 595 (605)
+...++-+.|....- . ...-..++..|++++|.++|.+.
T Consensus 77 e~L~kla~iA~~~g~--~---n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 77 NKLSKMQNIAQTRED--F---GSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHHHTTC--H---HHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCcc--H---HHHHHHHHHcCCHHHHHHHHHHC
Confidence 887777776655432 1 11122345688999998888653
No 253
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.14 E-value=3.5 Score=43.48 Aligned_cols=104 Identities=6% Similarity=-0.038 Sum_probs=70.4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC--CCH----H
Q 007407 463 DRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFL--TKK----N 536 (605)
Q Consensus 463 ~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P--~~~----~ 536 (605)
-+..+..+|..+.+.|+...|..+|.++............+++..+.++...+++..+...+.++..... .+. .
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~ 209 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNR 209 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHH
Confidence 3456778888888888888888888887765333233677777888888888888888888888765532 122 2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 007407 537 IWLKAAQLEKSYGCRESLIALLRKAVTYCP 566 (605)
Q Consensus 537 ~w~~la~l~~~~g~~e~A~~~lekAl~~~P 566 (605)
+....|.++...+++..|-..|-.++....
T Consensus 210 lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 210 YKTYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 233335555566778887777777776653
No 254
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.49 E-value=47 Score=34.84 Aligned_cols=104 Identities=9% Similarity=0.006 Sum_probs=73.0
Q ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHHhccC-cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCchhhH
Q 007407 428 IWIAAAKLE-ANGNTSMVGKIIERGIRALQGE-EVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIE----IGVDEEDKK 501 (605)
Q Consensus 428 iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~-~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~----~~p~~~~~~ 501 (605)
+...++.+. ..|++.+|..++.......... ......+.++.....|...+++..|..+++++.. ..+......
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 345567766 8888999988888865443221 1122457888888899999999999988888632 222212245
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 007407 502 RTWVADVEECKKRGSIETARAIFSPACTVF 531 (605)
Q Consensus 502 ~~~~~~a~~~~~~g~~~~A~~i~~~al~~~ 531 (605)
.++...+..+...++|.+|-..|..++..+
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~ 248 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEIYQTD 248 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Confidence 566677888888999999999998887653
No 255
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=83.32 E-value=2.8 Score=41.21 Aligned_cols=69 Identities=12% Similarity=-0.035 Sum_probs=61.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 007407 508 VEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGA 576 (605)
Q Consensus 508 a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a 576 (605)
+..+.+.|++++|++.+...++..|.+...-..|.+++.-.|+++.|.+-++-+.+.+|+....-..|-
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr 72 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLR 72 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHH
Confidence 345678899999999999999999999999999999999999999999999999999998765544443
No 256
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.61 E-value=19 Score=37.99 Aligned_cols=103 Identities=9% Similarity=-0.004 Sum_probs=75.5
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC-chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h--cCCC--
Q 007407 463 DRDTWMKEAEVADRAGSVVTCVAIITNTIEI--GVD-EEDKKRTWVADVEECKKRGSIETARAIFSPACT-V--FLTK-- 534 (605)
Q Consensus 463 ~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~--~p~-~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~-~--~P~~-- 534 (605)
.......+|..++..|++.+|..++..+... +.. ......+++..+.++...+++..|..++.++.. . .+..
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~ 215 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYES 215 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHH
Confidence 3456778889999999999999999887643 221 122467788888899999999999999988743 2 2333
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 007407 535 --KNIWLKAAQLEKSYGCRESLIALLRKAVTYC 565 (605)
Q Consensus 535 --~~~w~~la~l~~~~g~~e~A~~~lekAl~~~ 565 (605)
..++...|.++...+++.+|-..|..+....
T Consensus 216 lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~ 248 (445)
T 4b4t_P 216 LKLEYYNLLVKISLHKREYLEVAQYLQEIYQTD 248 (445)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Confidence 3455566788888888888888888777653
No 257
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=80.21 E-value=30 Score=30.41 Aligned_cols=57 Identities=19% Similarity=0.145 Sum_probs=41.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 007407 541 AAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYA 597 (605)
Q Consensus 541 la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~ 597 (605)
.......+|+.+...+++...+...+-++.+.+.+|..|-+.|+..+|.+++.+|-+
T Consensus 97 ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 97 ALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 335566778888888888877666666678888888888888888888888887765
No 258
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.56 E-value=4.3 Score=43.75 Aligned_cols=104 Identities=10% Similarity=0.111 Sum_probs=60.5
Q ss_pred cHHHHHHHHHHHHHcCCHHH----------HHHHHHHHHHhC---CCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007407 463 DRDTWMKEAEVADRAGSVVT----------CVAIITNTIEIG---VDEEDKKRTWVADVEECKKRGSIETARAIFSPACT 529 (605)
Q Consensus 463 ~~~~wl~~A~~~e~~g~~~~----------A~~i~~~al~~~---p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~ 529 (605)
....|.-++..++..|.... .+..+-.++... -+......+|......|...+.++.|..+..++.
T Consensus 180 ~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~- 258 (523)
T 4b4t_S 180 NAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE- 258 (523)
T ss_dssp -----------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc-
Confidence 34567766666776664332 222222222211 1112356677788899999999999999999884
Q ss_pred hcCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 007407 530 VFLTK-------KNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQA 568 (605)
Q Consensus 530 ~~P~~-------~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~ 568 (605)
||.. ..+.+.+|.+..-.++|.+|.+.|..|+..||.+
T Consensus 259 -fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 259 -YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp -SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred -CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 6643 4566777999999999999999999999999854
No 259
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=75.93 E-value=13 Score=40.03 Aligned_cols=73 Identities=5% Similarity=-0.029 Sum_probs=39.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 007407 470 EAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLE 545 (605)
Q Consensus 470 ~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~ 545 (605)
.+...........|...|..|+...|. +...|.++|-+....|+.-.|.-.|-+++....-.+.++.++..+.
T Consensus 158 LGDL~RY~~~~~~A~~~Y~~A~~~~P~---~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f 230 (497)
T 1ya0_A 158 LGDIARYRNQTSQAESYYRHAAQLVPS---NGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT---BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhCCC---CCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHH
Confidence 344444444555566666666666655 5555556666555555555566555555544433455555544433
No 260
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.52 E-value=8.9 Score=40.29 Aligned_cols=106 Identities=11% Similarity=0.120 Sum_probs=82.2
Q ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchh-hH
Q 007407 427 AIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEI---GVDEED-KK 501 (605)
Q Consensus 427 ~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~---~p~~~~-~~ 501 (605)
.++..+|.+. ..|+++.|.++|.++.......+ ...+.|+.....+...+++..+...+.++-.. +++ ++ ..
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~--~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d-~~~~~ 208 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTG--AKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGD-WERRN 208 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCC--SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCC-THHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChH--HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCC-HHHHH
Confidence 3578899887 99999999999999988776543 46789999999999999999999999998664 333 22 22
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH
Q 007407 502 RTWVADVEECKKRGSIETARAIFSPACTVFLTKK 535 (605)
Q Consensus 502 ~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~ 535 (605)
.+....+..+...++|.+|-..|-.++..+....
T Consensus 209 ~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~~e 242 (429)
T 4b4t_R 209 RYKTYYGIHCLAVRNFKEAAKLLVDSLATFTSIE 242 (429)
T ss_dssp HHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCCSC
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHhccCCccc
Confidence 3344456667778999999999988887765443
No 261
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=72.60 E-value=41 Score=39.37 Aligned_cols=100 Identities=10% Similarity=0.043 Sum_probs=70.4
Q ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHH
Q 007407 429 WIAAAKLE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVAD 507 (605)
Q Consensus 429 wi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~~~~~~~wl~~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~ 507 (605)
+..+.... +.|+.++|..+|...-.... .|..++.-.|-....-+-+.|.+++|..+++.....+.. | +.-+|...
T Consensus 130 ynaLIdglcK~G~leeA~~Lf~eM~~m~~-kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~-P-DvvTYntL 206 (1134)
T 3spa_A 130 LLAFFKCCLLTDQLPLAHHLLVVHHGQRQ-KRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLT-P-DLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSHH-HHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC-C-CHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhh-cCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-C-cHHHHHHH
Confidence 44455545 88888888888887655421 234456777777777777888888888888888877654 3 45666666
Q ss_pred HHHHHHcCC-HHHHHHHHHHHHHhc
Q 007407 508 VEECKKRGS-IETARAIFSPACTVF 531 (605)
Q Consensus 508 a~~~~~~g~-~~~A~~i~~~al~~~ 531 (605)
...+.+.|+ .++|..+|++..+.-
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 677777776 467888888887653
No 262
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.07 E-value=5.9 Score=42.64 Aligned_cols=102 Identities=11% Similarity=0.034 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHHHHcCCHHH----------HHHHHHHHHH-----hcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007407 500 KKRTWVADVEECKKRGSIET----------ARAIFSPACT-----VFLT-KKNIWLKAAQLEKSYGCRESLIALLRKAVT 563 (605)
Q Consensus 500 ~~~~~~~~a~~~~~~g~~~~----------A~~i~~~al~-----~~P~-~~~~w~~la~l~~~~g~~e~A~~~lekAl~ 563 (605)
...+|+-++..+...|+... .|..+-.+++ .++. ...+|..+...|...+.++.|..+..++.
T Consensus 180 ~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~- 258 (523)
T 4b4t_S 180 NAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE- 258 (523)
T ss_dssp -----------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc-
Confidence 45566666666665555443 2333333333 2333 46788888999999999999999999985
Q ss_pred hCCCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCC
Q 007407 564 YCPQA-------EVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNSE 603 (605)
Q Consensus 564 ~~P~~-------~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~~ 603 (605)
.|.+ ....+.+|+++.-.+++.+|...|..|+...|.+.
T Consensus 259 -fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 259 -YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp -SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred -CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 5532 23345568889899999999999999999998653
No 263
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=69.08 E-value=18 Score=31.78 Aligned_cols=57 Identities=14% Similarity=0.026 Sum_probs=48.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 007407 509 EECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYC 565 (605)
Q Consensus 509 ~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~ 565 (605)
..+..+|+-+.--.++...+...|-+++++..+|..|.+.|+..++.+++.+|.+.-
T Consensus 99 d~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 99 DILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 456788998998899988877777789999999999999999999999999998753
No 264
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=67.31 E-value=1e+02 Score=30.69 Aligned_cols=39 Identities=5% Similarity=-0.092 Sum_probs=28.3
Q ss_pred HHHHHHHHHhC---C----CCHHHHHHHHHHHHHcCChHHHHHHHH
Q 007407 555 IALLRKAVTYC---P----QAEVLWLMGAKEKWLAGDVPATRDILQ 593 (605)
Q Consensus 555 ~~~lekAl~~~---P----~~~~l~l~~a~~~~~~gd~~~Ar~il~ 593 (605)
.+++++|+.-. + .++.++.++|..+|+.|++.+|+..|-
T Consensus 113 ~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 113 KDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 44555555432 1 468899999999999999999888773
No 265
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=67.28 E-value=14 Score=39.56 Aligned_cols=79 Identities=13% Similarity=-0.003 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007407 502 RTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKW 580 (605)
Q Consensus 502 ~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~ 580 (605)
...+.++++..-...+..|+..|.+|+.+.|++...|..+|.+....|+.-.|.-.|-+++....-.+..+..+..+.-
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 3556677777778889999999999999999999999999999999999999999999999765446777776666554
No 266
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=54.27 E-value=1.8e+02 Score=29.19 Aligned_cols=26 Identities=15% Similarity=0.013 Sum_probs=18.1
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHH
Q 007407 567 QAEVLWLMGAKEKWLAGDVPATRDIL 592 (605)
Q Consensus 567 ~~~~l~l~~a~~~~~~gd~~~Ar~il 592 (605)
.++.++.++|..+|+.+++.+|+..|
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 45677777777777777777776665
No 267
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=53.90 E-value=1.3e+02 Score=27.40 Aligned_cols=85 Identities=12% Similarity=-0.081 Sum_probs=51.2
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------------CCCC-HHHH
Q 007407 511 CKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTY-----------------CPQA-EVLW 572 (605)
Q Consensus 511 ~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~-----------------~P~~-~~l~ 572 (605)
+.-.|.+..+.-++.. -+.....+.-+.++.+.+++..|+..+++.++- +|.+ +-++
T Consensus 43 LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy 117 (242)
T 3kae_A 43 LYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFE 117 (242)
T ss_dssp HHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHH
T ss_pred hhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHH
Confidence 3445666655544432 233333333445666677777777777777621 2333 4456
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCC
Q 007407 573 LMGAKEKWLAGDVPATRDILQEAYAAIP 600 (605)
Q Consensus 573 l~~a~~~~~~gd~~~Ar~il~kAl~~~P 600 (605)
..+|.++-+.|+.++|...+...+...|
T Consensus 118 ~l~a~lltq~g~r~EaI~y~~~Sf~~~~ 145 (242)
T 3kae_A 118 SLLGDLCTLSGYREEGIGHYVRSFGKSF 145 (242)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhcCHHHhhhHhhhhcCCcc
Confidence 6777777778888888888777777665
No 268
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=51.62 E-value=3.6e+02 Score=31.78 Aligned_cols=134 Identities=7% Similarity=-0.044 Sum_probs=89.9
Q ss_pred HHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCcc------------------cccHHHHHHHHHHHHHcCC
Q 007407 419 RKKLPKERAIWIAAAKLE-ANGNTSMVGKIIERGIRALQGEEV------------------VIDRDTWMKEAEVADRAGS 479 (605)
Q Consensus 419 l~~~p~~~~iwi~~a~Le-~~g~~~~a~~i~~~al~~~p~~~~------------------~~~~~~wl~~A~~~e~~g~ 479 (605)
..-+|.++-.-+.+|++. ..|++++|..+|+++-..+..... ......++..+..+++.|.
T Consensus 835 ~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~ 914 (1139)
T 4fhn_B 835 IGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESA 914 (1139)
T ss_dssp HHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSC
T ss_pred hhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCC
Confidence 345677776667778877 999999999999886322211100 0122345666778889999
Q ss_pred HHHHHHHHHHHHHhCCCchh--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHH
Q 007407 480 VVTCVAIITNTIEIGVDEED--KKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRES 553 (605)
Q Consensus 480 ~~~A~~i~~~al~~~p~~~~--~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~ 553 (605)
++.+....+.+|...+.+.. ....|......+...|+|++|...+-..- -.......+..+.......|..+.
T Consensus 915 ~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~p-d~~~r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 915 YIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLS-TTPLKKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp CHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHH-HSSSCHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhCCChhh
Confidence 99999999999987543222 23468888888999999999987774331 223456777777666665555443
No 269
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=48.29 E-value=1.3e+02 Score=30.16 Aligned_cols=51 Identities=8% Similarity=-0.065 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCC
Q 007407 537 IWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPNS 602 (605)
Q Consensus 537 ~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~~ 602 (605)
++.....+..+++++..|-..-++.++..|..+ ..++|++++..+= .+|.|
T Consensus 209 aLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce-~~~~D 259 (325)
T 3mv2_A 209 ALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKAD-SMASD 259 (325)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHH-TSCCC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHh-cCCCC
Confidence 344445566788889888888888888887532 2455788877764 34443
No 270
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=48.02 E-value=60 Score=38.55 Aligned_cols=114 Identities=12% Similarity=-0.062 Sum_probs=79.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------cC
Q 007407 473 VADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVEECKKRGSIETARAIFSPACTV--------------------FL 532 (605)
Q Consensus 473 ~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~--------------------~P 532 (605)
.+...+.++-++. .+..-+. +.-.-+..|..+...|++++|..+|.+|-.- ++
T Consensus 821 ~l~~~~~~~~~~~----l~~~~~~---~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 821 KLFLFKQYNACMQ----LIGWLNS---DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHSCTTHHHH----HHHHSCC---CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHhhhHHHHHH----HhhhccC---CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence 4555555554443 3344455 3334466788999999999999999876311 11
Q ss_pred ---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHH----HHHHHHHHHHHcCChHHHHHHHH
Q 007407 533 ---TKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCP-QAEV----LWLMGAKEKWLAGDVPATRDILQ 593 (605)
Q Consensus 533 ---~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P-~~~~----l~l~~a~~~~~~gd~~~Ar~il~ 593 (605)
....+|+....+..++|.++.+.+.-+.|++.-+ +.+. +|...-+.....|++++|-..|-
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~ 962 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALM 962 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 1245677778888899999999999999998864 4432 56666667777899999877764
No 271
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=46.54 E-value=3.2e+02 Score=29.81 Aligned_cols=80 Identities=11% Similarity=0.065 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 007407 517 IETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAY 596 (605)
Q Consensus 517 ~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl 596 (605)
..++...+..+....+++ .+..-++......|+++.|...|++.-......+...+-.|+.+...|+.++|+.+|.++.
T Consensus 268 ~~~~~~~~~~~~~~~~~~-~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 268 TDEQAKWRDDAIMRSQST-SLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp CHHHHHHHHHHHHTCCCH-HHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHhccccCCCh-HHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 345555555544333322 2222222333455777777776654333222234434444555556777777777777765
Q ss_pred H
Q 007407 597 A 597 (605)
Q Consensus 597 ~ 597 (605)
+
T Consensus 347 ~ 347 (618)
T 1qsa_A 347 Q 347 (618)
T ss_dssp T
T ss_pred c
Confidence 3
No 272
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=45.63 E-value=1.8e+02 Score=26.54 Aligned_cols=130 Identities=12% Similarity=0.040 Sum_probs=75.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhC----CC----------c-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH
Q 007407 472 EVADRAGSVVTCVAIITNTIEIG----VD----------E-EDKKRTWVADVEECKKRGSIETARAIFSPACTVFLTKKN 536 (605)
Q Consensus 472 ~~~e~~g~~~~A~~i~~~al~~~----p~----------~-~~~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~~ 536 (605)
..+.+..++..|...++.++.-. |+ + .|..-.+..+|.++...|+.++|+..|.......|-...
T Consensus 70 LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~ 149 (242)
T 3kae_A 70 LCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSP 149 (242)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccch
Confidence 34455566777777777766321 11 0 123445666788888888888888888887777765544
Q ss_pred HHHHHH-H-HH--------HHcCC--HH-----HHH--------HHHHHHHHhCCCCHHH-HHHHHHHHHHcCChHHHHH
Q 007407 537 IWLKAA-Q-LE--------KSYGC--RE-----SLI--------ALLRKAVTYCPQAEVL-WLMGAKEKWLAGDVPATRD 590 (605)
Q Consensus 537 ~w~~la-~-l~--------~~~g~--~e-----~A~--------~~lekAl~~~P~~~~l-~l~~a~~~~~~gd~~~Ar~ 590 (605)
+=..+- + +. .+.|+ .+ ... ...++-....|.-... --.+|+-++..|-.++.+.
T Consensus 150 vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~ 229 (242)
T 3kae_A 150 VENLLLENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKA 229 (242)
T ss_dssp HHHHHHTTCCCCCC-----------CHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhhcCCCcccchHHHHhhhhccchhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHH
Confidence 432110 0 00 00010 00 011 2233333445654333 2456677888999999999
Q ss_pred HHHHHHHHCCC
Q 007407 591 ILQEAYAAIPN 601 (605)
Q Consensus 591 il~kAl~~~P~ 601 (605)
+|...-..+|.
T Consensus 230 lf~~lR~kDP~ 240 (242)
T 3kae_A 230 CFELVRRKDPM 240 (242)
T ss_dssp HHHHHHHHSTT
T ss_pred HHHHHHhcCCC
Confidence 99999999985
No 273
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=43.36 E-value=52 Score=25.33 Aligned_cols=29 Identities=21% Similarity=0.064 Sum_probs=16.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 007407 506 ADVEECKKRGSIETARAIFSPACTVFLTK 534 (605)
Q Consensus 506 ~~a~~~~~~g~~~~A~~i~~~al~~~P~~ 534 (605)
..++.+...|++++|...|.+|+.+.|.-
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP 50 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQP 50 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 44555566666666666666666655544
No 274
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=42.64 E-value=90 Score=27.90 Aligned_cols=53 Identities=9% Similarity=0.137 Sum_probs=25.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHH------HHHHcCCHHHHHHHHHHHH
Q 007407 510 ECKKRGSIETARAIFSPACTVFLTK---KNIWLKAAQ------LEKSYGCRESLIALLRKAV 562 (605)
Q Consensus 510 ~~~~~g~~~~A~~i~~~al~~~P~~---~~~w~~la~------l~~~~g~~e~A~~~lekAl 562 (605)
.+.+.|.|=+|..+++.+-...|.. ..+|..+++ ...+.|+..-|..++.+|+
T Consensus 41 ~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al 102 (161)
T 2ijq_A 41 RLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSL 102 (161)
T ss_dssp HHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3444566666666666665544332 334443333 1123455555555555443
No 275
>4g3b_A Alpha4F3D; alpha helix, de novo designed, fluorinated protein, coiled-C NOVO protein; HET: 6FL; 1.19A {Synthetic} PDB: 4g4l_A* 3twg_A*
Probab=41.95 E-value=38 Score=19.64 Aligned_cols=19 Identities=26% Similarity=0.543 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHhhhhH
Q 007407 101 ADAVWESIDKLMDSRRKSR 119 (605)
Q Consensus 101 ad~i~~~id~~~~~r~~~~ 119 (605)
||..|.+++..-.+=||.+
T Consensus 3 ade~ykeled~qerlrk~r 21 (26)
T 4g3b_A 3 ADEXYKELEDXQERLRKXR 21 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 7888988886554444433
No 276
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=39.09 E-value=2.5e+02 Score=27.96 Aligned_cols=50 Identities=20% Similarity=0.194 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCC
Q 007407 537 IWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMGAKEKWLAGDVPATRDILQEAYAAIPN 601 (605)
Q Consensus 537 ~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~a~~~~~~gd~~~Ar~il~kAl~~~P~ 601 (605)
++.....+..+++++..|-..-++.|+..|. +.. .++|++++..+=+ +|.
T Consensus 200 aLr~AM~~a~K~KNy~tAa~fArrLLel~p~-~~~-------------~~qArkil~~ce~-~~~ 249 (320)
T 3mkr_B 200 VLRTALNLFFKLKNFRTAAAFARRLLELGPK-PEV-------------AQQTRKILSACEK-NPT 249 (320)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC-HHH-------------HHHHHHHHHHHHH-SCC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-HHH-------------HHHHHHHHHHHhc-CCC
Confidence 3444455667889999998999999988775 222 3557888877743 444
No 277
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=37.94 E-value=1e+02 Score=24.22 Aligned_cols=42 Identities=19% Similarity=0.094 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcC
Q 007407 267 ILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLAR 330 (605)
Q Consensus 267 ~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~ 330 (605)
+++|..+++++++. ...|++++|..++.+|++. |+.+++.+.
T Consensus 16 ~~~Ai~lv~~Ave~---------------D~~g~y~eAl~lY~~aie~-------l~~alk~e~ 57 (83)
T 2w2u_A 16 EEMARKYAINAVKA---------------DKEGNAEEAITNYKKAIEV-------LAQLVSLYR 57 (83)
T ss_dssp HHHHHHHHHHHHHH---------------HHTTCHHHHHHHHHHHHHH-------HHHHHHHST
T ss_pred HHHHHHHHHHHHHH---------------HHhccHHHHHHHHHHHHHH-------HHHHHHHCC
Confidence 56677777777543 5678899999988888764 455555553
No 278
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=37.81 E-value=71 Score=24.54 Aligned_cols=37 Identities=19% Similarity=0.186 Sum_probs=27.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 007407 539 LKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLMG 575 (605)
Q Consensus 539 ~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~~ 575 (605)
..+|..+...|+.+++...|-+|+..||+-..+...|
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~i~ 57 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVL 57 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3457777778888888888888888888766665555
No 279
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=37.11 E-value=1.1e+02 Score=23.94 Aligned_cols=42 Identities=17% Similarity=0.014 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhcC
Q 007407 267 ILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLAR 330 (605)
Q Consensus 267 ~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~~ 330 (605)
+++|..+++++++. ...|++++|..++.+|++. |+.+++.+.
T Consensus 8 ~~~Ai~lv~~Ave~---------------D~~g~y~eAl~lY~~aie~-------l~~~lk~e~ 49 (83)
T 2v6y_A 8 EDMARKYAILAVKA---------------DKEGKVEDAITYYKKAIEV-------LSQIIVLYP 49 (83)
T ss_dssp HHHHHHHHHHHHHH---------------HHTTCHHHHHHHHHHHHHH-------HHHHHHHCT
T ss_pred HHHHHHHHHHHHHH---------------HHhccHHHHHHHHHHHHHH-------HHHHHHHCC
Confidence 44666666666443 5678888898888888764 455555553
No 280
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=35.74 E-value=3.1e+02 Score=26.44 Aligned_cols=47 Identities=15% Similarity=0.140 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHH-cCChHHHHHHHHHHHH
Q 007407 551 RESLIALLRKAVTY-----CPQAEV---LWLMGAKEKWL-AGDVPATRDILQEAYA 597 (605)
Q Consensus 551 ~e~A~~~lekAl~~-----~P~~~~---l~l~~a~~~~~-~gd~~~Ar~il~kAl~ 597 (605)
.+.+...|+.|+.. .|.||. +.+.++.+++. .+++++|..+-.+||.
T Consensus 151 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 206 (260)
T 1o9d_A 151 AESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 206 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 35678888888753 577764 56788888887 8999999998888874
No 281
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=35.55 E-value=3.4e+02 Score=26.86 Aligned_cols=29 Identities=0% Similarity=-0.113 Sum_probs=17.6
Q ss_pred HHHHHHHHHH-HHHcCChHHHHHHHHHHHH
Q 007407 569 EVLWLMGAKE-KWLAGDVPATRDILQEAYA 597 (605)
Q Consensus 569 ~~l~l~~a~~-~~~~gd~~~Ar~il~kAl~ 597 (605)
..+++.-+.+ +...|++..|...+..-.+
T Consensus 187 ~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 187 VAEFFSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3444444443 3357888888888776554
No 282
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=35.06 E-value=3.2e+02 Score=26.36 Aligned_cols=47 Identities=19% Similarity=0.195 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHh----CCCCHH---HHHHHHHHHHH-cCChHHHHHHHHHHHH
Q 007407 551 RESLIALLRKAVTY----CPQAEV---LWLMGAKEKWL-AGDVPATRDILQEAYA 597 (605)
Q Consensus 551 ~e~A~~~lekAl~~----~P~~~~---l~l~~a~~~~~-~gd~~~Ar~il~kAl~ 597 (605)
.+.+...|+.|+.. .|.||. +.+.++.+++. .+++++|..+-.+||.
T Consensus 172 ~e~a~~aY~~A~~iA~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 226 (260)
T 2npm_A 172 AEDALKAYKDATVVAKDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFE 226 (260)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45688889988864 467764 56788888887 8999999999988886
No 283
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=32.87 E-value=3.3e+02 Score=25.99 Aligned_cols=47 Identities=15% Similarity=0.033 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHH-cCChHHHHHHHHHHHH
Q 007407 551 RESLIALLRKAVTY-----CPQAEV---LWLMGAKEKWL-AGDVPATRDILQEAYA 597 (605)
Q Consensus 551 ~e~A~~~lekAl~~-----~P~~~~---l~l~~a~~~~~-~gd~~~Ar~il~kAl~ 597 (605)
.+.+...|+.|+.. .|.||. +.+.++.+++. .+++++|..+-.+||.
T Consensus 147 ~~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd 202 (248)
T 3uzd_A 147 VESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFD 202 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35678888888653 477764 56778888887 8999999998888875
No 284
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=32.67 E-value=3.3e+02 Score=25.80 Aligned_cols=47 Identities=13% Similarity=0.070 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHH-cCChHHHHHHHHHHHH
Q 007407 551 RESLIALLRKAVTY-----CPQAEV---LWLMGAKEKWL-AGDVPATRDILQEAYA 597 (605)
Q Consensus 551 ~e~A~~~lekAl~~-----~P~~~~---l~l~~a~~~~~-~gd~~~Ar~il~kAl~ 597 (605)
.+.+...|+.|+.. .|.||. +.+.++.+++. .|++++|..+-.+||.
T Consensus 146 ~e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd 201 (234)
T 2br9_A 146 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 201 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45678888888754 577764 56788888887 8999999998888875
No 285
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=30.95 E-value=2e+02 Score=25.65 Aligned_cols=60 Identities=7% Similarity=-0.044 Sum_probs=35.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHH------HHHHcCCHHHHHHHHHHHHH
Q 007407 470 EAEVADRAGSVVTCVAIITNTIEIGVDEEDKKRTWVADVE------ECKKRGSIETARAIFSPACT 529 (605)
Q Consensus 470 ~A~~~e~~g~~~~A~~i~~~al~~~p~~~~~~~~~~~~a~------~~~~~g~~~~A~~i~~~al~ 529 (605)
.+..+...|.+-+|-++++.+....+...+...+|..+++ ...+.|+..-|+.++.+++.
T Consensus 38 ~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 38 HGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3444555588888888888887765442112333333333 33456777777777777754
No 286
>1mke_A WIP - N-WAsp, fusion protein consisting of wiskott-aldrich syndrome protein interacting protein...; polyproline, protein-protein complex; NMR {Rattus norvegicus} SCOP: b.55.1.4
Probab=29.99 E-value=27 Score=31.06 Aligned_cols=23 Identities=17% Similarity=0.448 Sum_probs=18.6
Q ss_pred ccHHHHHHHHHHHHHHHHhhhhH
Q 007407 97 EDKEADAVWESIDKLMDSRRKSR 119 (605)
Q Consensus 97 ~d~ead~i~~~id~~~~~r~~~~ 119 (605)
|++||...+..|..++..|++++
T Consensus 125 de~EA~~F~~~V~~~l~~~~~~~ 147 (152)
T 1mke_A 125 NEEEAKKFRKAVTDLLGRRQRKS 147 (152)
T ss_dssp SHHHHHHHHHHHHHHHHHCC---
T ss_pred CHHHHHHHHHHHHHHHHHHHhhh
Confidence 68999999999999998887654
No 287
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=29.09 E-value=81 Score=18.45 Aligned_cols=15 Identities=20% Similarity=0.596 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHH
Q 007407 100 EADAVWESIDKLMDS 114 (605)
Q Consensus 100 ead~i~~~id~~~~~ 114 (605)
-||.+|.++|.--.+
T Consensus 2 nadelykeledlqer 16 (27)
T 3twe_A 2 NADELYKELEDLQER 16 (27)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH
Confidence 388999988864433
No 288
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=28.85 E-value=63 Score=26.21 Aligned_cols=30 Identities=20% Similarity=0.097 Sum_probs=21.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 007407 505 VADVEECKKRGSIETARAIFSPACTVFLTK 534 (605)
Q Consensus 505 ~~~a~~~~~~g~~~~A~~i~~~al~~~P~~ 534 (605)
+..++.+...|+++.|...|.+|+.+.|.-
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP 53 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQP 53 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 456777778888888888787777776543
No 289
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=28.83 E-value=3.8e+02 Score=25.38 Aligned_cols=47 Identities=13% Similarity=0.102 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHH-cCChHHHHHHHHHHHH
Q 007407 551 RESLIALLRKAVTY-----CPQAEV---LWLMGAKEKWL-AGDVPATRDILQEAYA 597 (605)
Q Consensus 551 ~e~A~~~lekAl~~-----~P~~~~---l~l~~a~~~~~-~gd~~~Ar~il~kAl~ 597 (605)
.+.+...|+.|+.. .|.||. +.+.++.+++. .+++++|..+-.+||.
T Consensus 149 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd 204 (236)
T 3iqu_A 149 IDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFD 204 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45688889888753 477765 56778888887 8999999998888874
No 290
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=28.33 E-value=3.8e+02 Score=25.23 Aligned_cols=52 Identities=12% Similarity=-0.139 Sum_probs=40.4
Q ss_pred HcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHH-cCChHHHHHHHHHHHHH
Q 007407 547 SYGCRESLIALLRKAVTY-----CPQA---EVLWLMGAKEKWL-AGDVPATRDILQEAYAA 598 (605)
Q Consensus 547 ~~g~~e~A~~~lekAl~~-----~P~~---~~l~l~~a~~~~~-~gd~~~Ar~il~kAl~~ 598 (605)
..|+.+.+...|+.|+.. .|.| -.+.+.++.+++. .+++++|..+-.+||..
T Consensus 137 ~~g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~ 197 (227)
T 2o8p_A 137 GLCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKI 197 (227)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 456678888889888764 2444 4678888888887 89999999999999764
No 291
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=27.29 E-value=2.3e+02 Score=23.65 Aligned_cols=41 Identities=17% Similarity=0.262 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHHHhhc
Q 007407 267 ILKARKIVRAVTKNSPKKPLGWIQAARLEELANEEAAARKLITKGCNMCPKNEDVWLEACRLA 329 (605)
Q Consensus 267 ~~kAr~ll~~al~~~P~~~~~wia~Arle~~~g~~~~Ar~ll~~~l~~~P~~~~lwle~a~L~ 329 (605)
+.+|..++.++++ +...|+++.|+.+|.++|+. |+..++.+
T Consensus 15 l~kAi~lv~~Ave---------------~D~ag~y~eAl~lY~~Aie~-------l~~alk~e 55 (117)
T 2cpt_A 15 LQKAIDLASKAAQ---------------EDKAGNYEEALQLYQHAVQY-------FLHVVKYE 55 (117)
T ss_dssp HHHHHHHHHHHHH---------------HHHHTCHHHHHHHHHHHHHH-------HHHHHHTS
T ss_pred HHHHHHHHHHHHH---------------HHHccCHHHHHHHHHHHHHH-------HHHHHHhc
Confidence 5677777777752 35668999999999888764 45556655
No 292
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=26.94 E-value=2.3e+02 Score=22.22 Aligned_cols=19 Identities=11% Similarity=0.130 Sum_probs=15.4
Q ss_pred HHhcCHHHHHHHHHHHHhh
Q 007407 296 ELANEEAAARKLITKGCNM 314 (605)
Q Consensus 296 ~~~g~~~~Ar~ll~~~l~~ 314 (605)
...|++++|..++.+|++.
T Consensus 27 D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 27 DSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 5678889999988888764
No 293
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=26.15 E-value=1.9e+02 Score=22.98 Aligned_cols=60 Identities=10% Similarity=0.043 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHH--------------HHHHHHHHHHhCCCCHHHHHHHH
Q 007407 517 IETARAIFSPACTVFLTKKNIWLKAAQLEKSYGCRES--------------LIALLRKAVTYCPQAEVLWLMGA 576 (605)
Q Consensus 517 ~~~A~~i~~~al~~~P~~~~~w~~la~l~~~~g~~e~--------------A~~~lekAl~~~P~~~~l~l~~a 576 (605)
++.|+....++-..+-+++..|.....+......-.. ..+++++.-.+.-+++.+...+.
T Consensus 10 ~~~A~~YvnkVK~rF~~~p~~Y~~FL~IL~~y~~~~~~~~~~~~~~~~~~~~~~V~~~V~~LF~~h~DLl~~F~ 83 (89)
T 1g1e_B 10 FNHAINYVNKIKNRFQGQPDIYKAFLEILHTYQKEQRNAKEAGGNYTPALTEQEVYAQVARLFKNQEDLLSEFG 83 (89)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCSCCHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhccCccccccccccccccHHHHHHHHHHHHccCHHHHHHHH
Confidence 4677788888878888888888877766665432211 13788888788777888766543
No 294
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=24.27 E-value=1.4e+02 Score=27.45 Aligned_cols=87 Identities=11% Similarity=0.033 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 007407 500 KKRTWVADVEECKKRGSIETARAIFSPACTVFLTKK-----NIWLKAAQLEKSYGCRESLIALLRKAVTYCPQAEVLWLM 574 (605)
Q Consensus 500 ~~~~~~~~a~~~~~~g~~~~A~~i~~~al~~~P~~~-----~~w~~la~l~~~~g~~e~A~~~lekAl~~~P~~~~l~l~ 574 (605)
.....+-.+..+...+++.+|...+..|+...|... .++..+.-+..-.|+... ..++++ .+. . .+..
T Consensus 13 ~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP~-~~ll~~----~~~-~-~y~~ 85 (203)
T 3t5x_A 13 RVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPT-VELLKK----YHL-M-QFAE 85 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEEC-HHHHHH----TTC-G-GGHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCCC-HHHhhh----Cch-h-HHHH
Confidence 445556667888888889999999999988877643 233344444455666543 333332 221 1 2333
Q ss_pred HHHHHHHcCChHHHHHHHHH
Q 007407 575 GAKEKWLAGDVPATRDILQE 594 (605)
Q Consensus 575 ~a~~~~~~gd~~~Ar~il~k 594 (605)
+... .+.||+..-.+++++
T Consensus 86 L~~A-vr~Gdl~~f~~~l~~ 104 (203)
T 3t5x_A 86 VTRA-VSEGNLLLLHEALAK 104 (203)
T ss_dssp HHHH-HHHTCHHHHHHHHHH
T ss_pred HHHH-HHhCCHHHHHHHHHH
Confidence 4333 367887765555543
No 295
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=24.15 E-value=93 Score=25.21 Aligned_cols=28 Identities=21% Similarity=0.204 Sum_probs=14.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 007407 541 AAQLEKSYGCRESLIALLRKAVTYCPQA 568 (605)
Q Consensus 541 la~l~~~~g~~e~A~~~lekAl~~~P~~ 568 (605)
+|..+...|+++.+...|-+|+..||+-
T Consensus 26 lGE~L~~~g~~e~av~Hf~nAl~Vc~qP 53 (95)
T 1om2_A 26 LGEELLAQGDYEKGVDHLTNAIAVCGQP 53 (95)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 3444444555555555555555555543
Done!