Query 007411
Match_columns 604
No_of_seqs 1180 out of 2436
Neff 8.7
Searched_HMMs 46136
Date Thu Mar 28 23:14:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007411.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007411hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0282 mRNA splicing factor [ 100.0 1.4E-85 3E-90 655.7 28.1 461 81-604 41-503 (503)
2 KOG0271 Notchless-like WD40 re 100.0 1.8E-43 3.8E-48 344.0 25.2 292 304-604 106-437 (480)
3 KOG0271 Notchless-like WD40 re 100.0 2.3E-43 5E-48 343.1 25.6 317 263-603 120-478 (480)
4 KOG0286 G-protein beta subunit 100.0 3E-40 6.5E-45 312.0 32.5 292 304-604 46-343 (343)
5 KOG0272 U4/U6 small nuclear ri 100.0 6.5E-41 1.4E-45 330.3 23.8 287 306-604 168-458 (459)
6 KOG0265 U5 snRNP-specific prot 100.0 3.6E-37 7.8E-42 292.2 26.9 293 305-602 39-334 (338)
7 KOG0272 U4/U6 small nuclear ri 100.0 3.4E-37 7.3E-42 304.1 24.6 278 261-561 178-458 (459)
8 KOG0285 Pleiotropic regulator 100.0 2.1E-36 4.5E-41 292.4 26.4 294 296-603 134-436 (460)
9 KOG0279 G protein beta subunit 100.0 3.9E-35 8.5E-40 275.9 31.5 289 304-604 6-311 (315)
10 KOG0293 WD40 repeat-containing 100.0 2.7E-36 5.9E-41 296.3 23.7 294 300-603 211-510 (519)
11 cd00200 WD40 WD40 domain, foun 100.0 1.3E-33 2.8E-38 282.3 38.2 287 306-604 2-289 (289)
12 KOG0315 G-protein beta subunit 100.0 1.9E-34 4E-39 267.0 29.2 270 326-604 10-286 (311)
13 KOG0295 WD40 repeat-containing 100.0 1.8E-35 3.8E-40 287.1 23.0 290 303-604 98-404 (406)
14 KOG0273 Beta-transducin family 100.0 2E-34 4.3E-39 287.8 30.1 277 313-604 235-521 (524)
15 KOG0316 Conserved WD40 repeat- 100.0 3.9E-34 8.4E-39 262.9 27.6 288 301-603 5-296 (307)
16 KOG0318 WD40 repeat stress pro 100.0 1.3E-33 2.8E-38 285.2 34.0 295 301-604 178-558 (603)
17 KOG0296 Angio-associated migra 100.0 1.1E-32 2.4E-37 267.8 33.3 287 305-604 56-396 (399)
18 KOG0315 G-protein beta subunit 100.0 9E-33 2E-37 255.9 30.1 293 269-584 9-309 (311)
19 KOG0279 G protein beta subunit 100.0 3.9E-33 8.4E-38 262.5 27.5 256 302-563 52-313 (315)
20 KOG0284 Polyadenylation factor 100.0 1.4E-34 3.1E-39 284.2 18.6 292 301-604 83-378 (464)
21 KOG0266 WD40 repeat-containing 100.0 1.2E-32 2.7E-37 297.3 33.0 291 305-604 150-452 (456)
22 KOG0291 WD40-repeat-containing 100.0 5.4E-32 1.2E-36 283.3 33.7 271 296-571 333-620 (893)
23 KOG0263 Transcription initiati 100.0 2.5E-32 5.3E-37 288.9 29.0 278 298-585 363-695 (707)
24 KOG0273 Beta-transducin family 100.0 9.7E-32 2.1E-36 268.6 29.0 292 300-604 166-480 (524)
25 KOG0291 WD40-repeat-containing 100.0 4.6E-31 1E-35 276.4 34.1 299 299-604 131-506 (893)
26 KOG0319 WD40-repeat-containing 100.0 5.9E-32 1.3E-36 283.0 26.7 328 257-604 104-575 (775)
27 KOG0281 Beta-TrCP (transducin 100.0 3.7E-33 8E-38 268.8 14.1 268 312-604 196-475 (499)
28 KOG0645 WD40 repeat protein [G 100.0 2.8E-30 6.2E-35 242.2 32.3 286 304-604 5-309 (312)
29 KOG0643 Translation initiation 100.0 2.3E-31 4.9E-36 248.9 24.1 284 308-603 5-314 (327)
30 PLN00181 protein SPA1-RELATED; 100.0 5.4E-30 1.2E-34 296.2 39.6 286 309-604 479-791 (793)
31 KOG0286 G-protein beta subunit 100.0 3.2E-30 7E-35 244.1 30.4 258 296-561 80-343 (343)
32 KOG0263 Transcription initiati 100.0 1.6E-31 3.5E-36 282.7 23.3 247 348-604 369-647 (707)
33 KOG0278 Serine/threonine kinas 100.0 1.4E-31 3.1E-36 247.9 18.4 283 307-603 8-294 (334)
34 KOG0319 WD40-repeat-containing 100.0 1.2E-30 2.7E-35 273.2 26.1 290 303-603 313-616 (775)
35 KOG0313 Microtubule binding pr 100.0 2.3E-30 4.9E-35 252.8 25.3 289 301-603 94-415 (423)
36 KOG0275 Conserved WD40 repeat- 100.0 1.4E-31 3E-36 255.7 15.6 295 301-604 200-507 (508)
37 KOG0292 Vesicle coat complex C 100.0 8.8E-30 1.9E-34 270.2 27.8 284 308-600 4-316 (1202)
38 KOG0306 WD40-repeat-containing 100.0 2.8E-29 6E-34 263.0 28.0 313 271-604 78-620 (888)
39 KOG0276 Vesicle coat complex C 100.0 3.7E-29 7.9E-34 257.2 28.1 286 305-602 5-295 (794)
40 KOG1407 WD40 repeat protein [F 100.0 6.9E-29 1.5E-33 231.7 26.6 283 307-603 14-308 (313)
41 KOG0288 WD40 repeat protein Ti 100.0 3.6E-30 7.8E-35 253.7 17.7 295 298-603 160-458 (459)
42 KOG0285 Pleiotropic regulator 100.0 9.6E-30 2.1E-34 246.3 20.3 247 346-604 140-387 (460)
43 KOG0295 WD40 repeat-containing 100.0 1.7E-29 3.8E-34 245.5 21.7 274 267-562 117-405 (406)
44 KOG0318 WD40 repeat stress pro 100.0 6.2E-28 1.3E-32 244.2 32.9 292 303-604 49-348 (603)
45 KOG0772 Uncharacterized conser 100.0 9.9E-29 2.2E-33 249.2 26.4 298 300-603 154-484 (641)
46 KOG0640 mRNA cleavage stimulat 100.0 3.4E-29 7.4E-34 238.4 21.5 295 304-603 103-423 (430)
47 KOG0276 Vesicle coat complex C 100.0 3.5E-29 7.5E-34 257.4 22.1 246 350-604 6-255 (794)
48 KOG0284 Polyadenylation factor 100.0 8.5E-30 1.8E-34 250.7 14.4 254 298-562 123-379 (464)
49 KOG0316 Conserved WD40 repeat- 100.0 1.5E-28 3.2E-33 226.2 21.2 243 348-604 8-255 (307)
50 KOG0266 WD40 repeat-containing 100.0 8.1E-28 1.7E-32 259.8 30.6 278 267-563 168-454 (456)
51 KOG0283 WD40 repeat-containing 100.0 2.6E-28 5.6E-33 260.6 26.0 253 304-564 257-577 (712)
52 KOG0268 Sof1-like rRNA process 100.0 3.4E-29 7.3E-34 243.2 15.7 287 301-603 54-342 (433)
53 KOG0274 Cdc4 and related F-box 100.0 3.6E-27 7.8E-32 254.8 31.8 277 307-604 201-480 (537)
54 KOG0265 U5 snRNP-specific prot 100.0 1E-27 2.2E-32 228.1 24.0 283 256-561 45-336 (338)
55 KOG1446 Histone H3 (Lys4) meth 100.0 3E-26 6.6E-31 220.2 34.3 287 304-603 5-300 (311)
56 KOG0292 Vesicle coat complex C 100.0 2.8E-27 6E-32 251.3 28.2 306 283-598 21-388 (1202)
57 KOG0305 Anaphase promoting com 100.0 2.8E-27 6.1E-32 246.9 27.7 273 317-604 181-459 (484)
58 cd00200 WD40 WD40 domain, foun 100.0 1.2E-26 2.6E-31 231.8 31.4 244 351-604 3-247 (289)
59 PLN00181 protein SPA1-RELATED; 100.0 2.1E-26 4.5E-31 266.3 37.0 287 265-562 490-792 (793)
60 KOG0647 mRNA export protein (c 100.0 5.3E-27 1.1E-31 223.3 26.1 281 311-597 25-315 (347)
61 KOG0299 U3 snoRNP-associated p 100.0 1.8E-27 3.8E-32 237.9 23.9 309 276-599 111-449 (479)
62 KOG0277 Peroxisomal targeting 100.0 2.4E-27 5.3E-32 220.5 21.9 281 317-604 12-307 (311)
63 KOG0281 Beta-TrCP (transducin 100.0 1.5E-28 3.3E-33 237.0 13.0 256 295-568 219-482 (499)
64 KOG0277 Peroxisomal targeting 100.0 2.8E-27 6.1E-32 220.1 19.4 268 280-562 36-308 (311)
65 KOG0306 WD40-repeat-containing 100.0 2.6E-26 5.7E-31 240.8 28.8 283 307-604 367-662 (888)
66 KOG0310 Conserved WD40 repeat- 100.0 2E-26 4.3E-31 232.1 25.6 277 313-602 26-305 (487)
67 PTZ00421 coronin; Provisional 100.0 2.1E-25 4.6E-30 240.6 35.1 266 314-586 21-314 (493)
68 KOG4283 Transcription-coupled 100.0 4E-26 8.7E-31 216.3 25.5 292 310-603 40-362 (397)
69 KOG0645 WD40 repeat protein [G 99.9 2.8E-25 6.1E-30 208.7 29.1 244 348-603 5-258 (312)
70 KOG1446 Histone H3 (Lys4) meth 99.9 3.9E-25 8.6E-30 212.5 29.2 248 349-604 6-260 (311)
71 KOG0288 WD40 repeat protein Ti 99.9 1.9E-26 4E-31 227.6 18.6 254 296-560 200-458 (459)
72 KOG0641 WD40 repeat protein [G 99.9 6.5E-24 1.4E-28 194.3 33.2 290 305-603 25-346 (350)
73 KOG1273 WD40 repeat protein [G 99.9 3.4E-25 7.4E-30 211.8 25.7 296 301-604 13-320 (405)
74 KOG0294 WD40 repeat-containing 99.9 2.9E-25 6.3E-30 212.6 24.9 250 297-604 27-279 (362)
75 KOG0289 mRNA splicing factor [ 99.9 4.6E-25 1E-29 218.9 26.3 256 299-562 247-505 (506)
76 KOG0973 Histone transcription 99.9 3.6E-25 7.7E-30 242.1 26.8 285 309-603 8-352 (942)
77 KOG0274 Cdc4 and related F-box 99.9 4.4E-25 9.5E-30 238.6 27.2 262 295-575 230-494 (537)
78 KOG0296 Angio-associated migra 99.9 1E-24 2.2E-29 212.5 26.6 273 265-563 71-398 (399)
79 KOG2055 WD40 repeat protein [G 99.9 4.3E-24 9.4E-29 213.6 31.6 283 313-603 213-509 (514)
80 KOG0300 WD40 repeat-containing 99.9 1.7E-25 3.6E-30 213.8 20.5 292 303-604 138-474 (481)
81 PTZ00420 coronin; Provisional 99.9 3.6E-24 7.8E-29 232.3 33.3 236 303-545 64-318 (568)
82 KOG2096 WD40 repeat protein [G 99.9 2.2E-24 4.7E-29 206.5 26.1 296 300-603 73-399 (420)
83 KOG0310 Conserved WD40 repeat- 99.9 3.7E-25 8E-30 223.0 21.9 247 305-562 60-308 (487)
84 PTZ00421 coronin; Provisional 99.9 1.1E-23 2.3E-28 227.4 34.7 230 308-544 70-314 (493)
85 KOG0639 Transducin-like enhanc 99.9 2.7E-25 5.9E-30 223.5 20.3 278 311-603 417-701 (705)
86 KOG0282 mRNA splicing factor [ 99.9 5.7E-26 1.2E-30 228.4 15.3 249 346-604 203-460 (503)
87 PTZ00420 coronin; Provisional 99.9 1.7E-23 3.7E-28 227.0 35.2 247 332-586 50-317 (568)
88 KOG0289 mRNA splicing factor [ 99.9 4.7E-24 1E-28 211.8 26.0 280 313-603 219-503 (506)
89 KOG1036 Mitotic spindle checkp 99.9 5.5E-24 1.2E-28 203.6 25.5 273 313-596 13-294 (323)
90 KOG0278 Serine/threonine kinas 99.9 1.5E-25 3.2E-30 208.0 13.9 253 303-569 49-303 (334)
91 KOG0301 Phospholipase A2-activ 99.9 4.7E-24 1E-28 222.6 26.6 278 303-603 4-285 (745)
92 KOG1407 WD40 repeat protein [F 99.9 9.1E-24 2E-28 197.6 25.3 267 265-554 27-293 (313)
93 KOG0643 Translation initiation 99.9 1.6E-23 3.5E-28 196.5 26.6 277 264-563 16-317 (327)
94 KOG0308 Conserved WD40 repeat- 99.9 5.2E-25 1.1E-29 228.0 18.2 284 312-603 20-324 (735)
95 KOG1408 WD40 repeat protein [F 99.9 1.8E-24 3.9E-29 225.3 22.2 294 307-603 363-710 (1080)
96 KOG4328 WD40 protein [Function 99.9 4.4E-24 9.6E-29 213.4 23.9 300 302-603 175-492 (498)
97 KOG0283 WD40 repeat-containing 99.9 2.7E-24 5.9E-29 229.9 23.9 248 351-604 260-574 (712)
98 KOG0300 WD40 repeat-containing 99.9 4.8E-24 1E-28 203.8 21.8 288 256-565 146-478 (481)
99 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.9E-22 4E-27 205.7 35.1 269 327-604 2-277 (300)
100 KOG0308 Conserved WD40 repeat- 99.9 1.6E-24 3.4E-29 224.5 19.7 314 272-604 39-391 (735)
101 KOG1332 Vesicle coat complex C 99.9 2.2E-24 4.7E-29 199.9 18.2 251 309-563 7-286 (299)
102 KOG1539 WD repeat protein [Gen 99.9 6.4E-23 1.4E-27 217.9 31.8 296 297-603 186-645 (910)
103 KOG0293 WD40 repeat-containing 99.9 2.3E-24 5E-29 212.6 19.4 276 265-563 231-513 (519)
104 KOG0313 Microtubule binding pr 99.9 8.9E-24 1.9E-28 206.8 21.9 239 355-604 103-374 (423)
105 KOG0268 Sof1-like rRNA process 99.9 2.3E-24 5.1E-29 209.6 17.7 268 272-567 81-349 (433)
106 KOG0264 Nucleosome remodeling 99.9 9.4E-24 2E-28 211.5 22.0 254 310-604 121-402 (422)
107 KOG1274 WD40 repeat protein [G 99.9 5.5E-23 1.2E-27 220.7 29.3 263 311-588 11-283 (933)
108 KOG0321 WD40 repeat-containing 99.9 9.3E-24 2E-28 218.4 22.4 278 324-604 62-389 (720)
109 KOG0646 WD40 repeat protein [G 99.9 5.6E-24 1.2E-28 213.4 20.0 250 298-586 66-330 (476)
110 KOG0305 Anaphase promoting com 99.9 2.2E-23 4.7E-28 217.9 24.5 253 299-565 203-463 (484)
111 KOG0772 Uncharacterized conser 99.9 1E-23 2.3E-28 213.1 19.6 252 349-604 159-443 (641)
112 KOG0299 U3 snoRNP-associated p 99.9 3.5E-23 7.5E-28 207.3 21.9 243 300-552 191-444 (479)
113 KOG0641 WD40 repeat protein [G 99.9 5.4E-22 1.2E-26 181.7 27.1 257 300-563 76-349 (350)
114 KOG0647 mRNA export protein (c 99.9 1.6E-22 3.4E-27 192.9 23.7 238 355-604 25-279 (347)
115 KOG0650 WD40 repeat nucleolar 99.9 1.1E-22 2.3E-27 209.0 23.7 293 298-603 385-732 (733)
116 KOG0973 Histone transcription 99.9 2.8E-22 6E-27 219.6 27.8 288 267-564 22-356 (942)
117 KOG1036 Mitotic spindle checkp 99.9 3.2E-22 6.9E-27 191.6 24.1 236 356-604 12-260 (323)
118 KOG0275 Conserved WD40 repeat- 99.9 3E-23 6.5E-28 198.8 15.8 291 255-561 210-507 (508)
119 KOG1539 WD repeat protein [Gen 99.9 2.2E-21 4.8E-26 206.3 30.9 288 311-604 157-604 (910)
120 KOG0640 mRNA cleavage stimulat 99.9 2.4E-23 5.3E-28 198.6 13.7 224 350-604 105-333 (430)
121 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.7E-20 3.8E-25 191.1 35.5 267 304-585 22-300 (300)
122 KOG1063 RNA polymerase II elon 99.9 1.1E-21 2.3E-26 205.0 26.4 293 302-603 180-645 (764)
123 KOG0646 WD40 repeat protein [G 99.9 1.1E-21 2.4E-26 196.9 23.4 256 336-604 18-305 (476)
124 KOG0269 WD40 repeat-containing 99.9 2.3E-22 5E-27 212.3 18.0 279 315-601 41-335 (839)
125 KOG2445 Nuclear pore complex c 99.9 9.3E-21 2E-25 181.3 26.7 254 310-603 10-315 (361)
126 KOG2048 WD40 repeat protein [G 99.9 6.8E-20 1.5E-24 191.4 31.9 277 312-602 24-315 (691)
127 KOG2106 Uncharacterized conser 99.9 3.4E-20 7.5E-25 187.3 27.3 290 305-604 279-624 (626)
128 KOG0269 WD40 repeat-containing 99.9 3.9E-22 8.5E-27 210.5 13.9 245 315-565 89-342 (839)
129 KOG1332 Vesicle coat complex C 99.9 4.1E-21 8.9E-26 178.3 18.5 245 354-603 8-283 (299)
130 KOG1274 WD40 repeat protein [G 99.9 2E-20 4.3E-25 201.2 26.6 243 355-604 11-260 (933)
131 KOG0301 Phospholipase A2-activ 99.9 9.8E-21 2.1E-25 197.9 22.4 240 347-604 4-247 (745)
132 KOG0264 Nucleosome remodeling 99.9 5E-21 1.1E-25 192.0 19.2 212 304-517 168-405 (422)
133 KOG2106 Uncharacterized conser 99.9 2E-19 4.3E-24 181.9 29.6 286 301-603 142-474 (626)
134 KOG2055 WD40 repeat protein [G 99.9 1.8E-20 4E-25 187.8 21.6 285 259-563 214-512 (514)
135 KOG1408 WD40 repeat protein [F 99.9 3.6E-20 7.8E-25 193.5 23.3 284 316-604 327-669 (1080)
136 KOG1063 RNA polymerase II elon 99.9 4.8E-20 1E-24 192.7 24.1 293 304-603 45-388 (764)
137 KOG0267 Microtubule severing p 99.9 1.3E-21 2.8E-26 205.1 10.5 237 308-555 23-260 (825)
138 KOG2048 WD40 repeat protein [G 99.9 3.2E-19 7E-24 186.4 27.9 242 356-603 24-272 (691)
139 KOG0267 Microtubule severing p 99.9 1.1E-21 2.4E-26 205.6 9.4 255 326-597 4-259 (825)
140 KOG1034 Transcriptional repres 99.8 1.2E-19 2.6E-24 175.0 21.8 292 307-604 32-381 (385)
141 KOG0302 Ribosome Assembly prot 99.8 6.3E-20 1.4E-24 179.8 19.7 249 308-599 146-432 (440)
142 KOG0322 G-protein beta subunit 99.8 2.8E-20 6.1E-25 174.5 15.9 298 301-604 2-321 (323)
143 KOG0639 Transducin-like enhanc 99.8 4.2E-20 9.1E-25 186.3 16.9 236 355-603 417-660 (705)
144 KOG0294 WD40 repeat-containing 99.8 2.4E-19 5.2E-24 172.2 21.2 228 270-519 53-284 (362)
145 KOG4378 Nuclear protein COP1 [ 99.8 1.4E-19 3E-24 182.5 20.3 259 315-585 36-303 (673)
146 KOG2919 Guanine nucleotide-bin 99.8 7.8E-19 1.7E-23 169.1 23.6 272 316-596 52-360 (406)
147 KOG2096 WD40 repeat protein [G 99.8 8E-19 1.7E-23 168.6 22.5 245 351-603 80-357 (420)
148 KOG0650 WD40 repeat nucleolar 99.8 4.2E-19 9.2E-24 182.8 21.7 246 348-603 391-677 (733)
149 KOG1188 WD40 repeat protein [G 99.8 2.3E-19 4.9E-24 174.1 18.2 274 327-603 41-343 (376)
150 KOG1538 Uncharacterized conser 99.8 7.3E-19 1.6E-23 182.5 22.5 272 315-604 14-291 (1081)
151 KOG4227 WD40 repeat protein [G 99.8 1.2E-18 2.7E-23 171.0 22.7 293 306-604 49-385 (609)
152 KOG0270 WD40 repeat-containing 99.8 3.5E-19 7.7E-24 178.0 18.8 236 326-568 192-454 (463)
153 KOG1240 Protein kinase contain 99.8 2.7E-18 5.9E-23 189.3 26.4 304 301-604 1036-1431(1431)
154 COG2319 FOG: WD40 repeat [Gene 99.8 2.8E-16 6.1E-21 165.1 40.3 289 303-604 145-440 (466)
155 KOG0270 WD40 repeat-containing 99.8 2.8E-19 6.1E-24 178.7 16.1 210 309-521 239-454 (463)
156 KOG1334 WD40 repeat protein [G 99.8 1.6E-19 3.4E-24 182.2 14.3 296 304-603 133-463 (559)
157 COG2319 FOG: WD40 repeat [Gene 99.8 2E-16 4.3E-21 166.2 38.0 287 308-604 60-357 (466)
158 KOG0302 Ribosome Assembly prot 99.8 7.1E-19 1.5E-23 172.4 17.5 220 354-604 148-376 (440)
159 KOG0307 Vesicle coat complex C 99.8 1.2E-19 2.6E-24 199.8 13.3 279 318-603 11-324 (1049)
160 KOG4378 Nuclear protein COP1 [ 99.8 2.9E-18 6.3E-23 173.0 19.4 261 333-604 9-278 (673)
161 KOG1009 Chromatin assembly com 99.8 1.3E-17 2.8E-22 165.3 23.2 282 313-602 13-368 (434)
162 KOG0649 WD40 repeat protein [G 99.8 5.6E-17 1.2E-21 150.7 24.9 274 315-603 12-313 (325)
163 KOG0642 Cell-cycle nuclear pro 99.8 1.5E-18 3.4E-23 178.1 16.0 261 305-604 286-559 (577)
164 KOG0307 Vesicle coat complex C 99.8 5.1E-19 1.1E-23 195.0 12.3 248 314-566 65-330 (1049)
165 KOG0321 WD40 repeat-containing 99.8 6.7E-18 1.4E-22 175.4 19.1 252 306-565 93-393 (720)
166 KOG4283 Transcription-coupled 99.8 2.4E-17 5.1E-22 157.0 21.2 209 354-566 40-279 (397)
167 KOG0303 Actin-binding protein 99.8 1.7E-17 3.7E-22 163.6 18.9 208 308-518 76-296 (472)
168 KOG1007 WD repeat protein TSSC 99.8 6.2E-17 1.4E-21 153.8 20.5 259 335-602 39-357 (370)
169 KOG1034 Transcriptional repres 99.8 9.9E-18 2.2E-22 161.9 14.9 247 312-563 88-383 (385)
170 KOG1273 WD40 repeat protein [G 99.8 7.2E-17 1.6E-21 155.1 20.5 203 394-604 20-224 (405)
171 KOG1517 Guanine nucleotide bin 99.8 9.7E-17 2.1E-21 174.6 23.4 283 312-603 1063-1378(1387)
172 KOG1445 Tumor-specific antigen 99.8 7.6E-17 1.6E-21 166.8 21.5 113 489-604 630-748 (1012)
173 KOG1310 WD40 repeat protein [G 99.8 5.9E-17 1.3E-21 165.5 20.4 210 305-517 42-304 (758)
174 PRK11028 6-phosphogluconolacto 99.8 2E-15 4.3E-20 157.2 32.5 270 329-604 5-302 (330)
175 KOG4328 WD40 protein [Function 99.7 6.9E-17 1.5E-21 162.2 19.8 253 305-563 226-495 (498)
176 KOG1517 Guanine nucleotide bin 99.7 3.5E-16 7.5E-21 170.4 25.8 250 313-565 1109-1383(1387)
177 KOG1009 Chromatin assembly com 99.7 3E-16 6.6E-21 155.6 21.0 283 272-568 28-377 (434)
178 KOG1587 Cytoplasmic dynein int 99.7 1.5E-15 3.2E-20 163.6 27.4 262 335-604 221-514 (555)
179 KOG1587 Cytoplasmic dynein int 99.7 4.4E-16 9.5E-21 167.7 22.9 246 313-564 242-517 (555)
180 KOG1963 WD40 repeat protein [G 99.7 2.7E-15 5.9E-20 161.8 27.8 287 311-604 203-536 (792)
181 KOG2445 Nuclear pore complex c 99.7 1E-15 2.2E-20 147.0 21.8 213 303-516 49-318 (361)
182 KOG0290 Conserved WD40 repeat- 99.7 1.9E-15 4.2E-20 143.9 23.5 284 305-596 37-356 (364)
183 PRK01742 tolB translocation pr 99.7 1.4E-15 3E-20 163.9 24.1 234 335-585 183-425 (429)
184 KOG0303 Actin-binding protein 99.7 7.8E-16 1.7E-20 152.0 19.7 254 326-585 44-319 (472)
185 PRK11028 6-phosphogluconolacto 99.7 3E-14 6.4E-19 148.4 31.7 251 305-563 27-304 (330)
186 KOG0644 Uncharacterized conser 99.7 9.7E-18 2.1E-22 178.3 5.2 240 303-604 180-424 (1113)
187 KOG2919 Guanine nucleotide-bin 99.7 5.4E-15 1.2E-19 142.8 23.3 277 268-555 60-362 (406)
188 KOG0642 Cell-cycle nuclear pro 99.7 3.3E-16 7.3E-21 161.1 15.6 246 266-521 302-566 (577)
189 KOG2110 Uncharacterized conser 99.7 7E-14 1.5E-18 137.6 30.5 236 313-563 5-248 (391)
190 KOG1538 Uncharacterized conser 99.7 1.1E-15 2.3E-20 159.2 18.5 242 304-563 44-293 (1081)
191 KOG0771 Prolactin regulatory e 99.7 5.5E-16 1.2E-20 154.9 14.7 198 317-517 148-355 (398)
192 KOG1523 Actin-related protein 99.7 7.8E-15 1.7E-19 141.7 21.8 245 307-597 4-269 (361)
193 KOG0771 Prolactin regulatory e 99.7 1E-14 2.2E-19 145.8 23.2 196 402-602 148-350 (398)
194 KOG1007 WD repeat protein TSSC 99.7 2.3E-15 4.9E-20 143.3 17.6 215 298-516 107-361 (370)
195 KOG1524 WD40 repeat-containing 99.7 1.6E-15 3.5E-20 154.7 15.8 209 326-560 75-283 (737)
196 KOG0290 Conserved WD40 repeat- 99.6 1.1E-14 2.4E-19 138.8 18.9 254 348-604 36-316 (364)
197 KOG1188 WD40 repeat protein [G 99.6 4.6E-15 9.9E-20 144.4 16.4 255 304-562 61-345 (376)
198 KOG1963 WD40 repeat protein [G 99.6 1.2E-13 2.5E-18 149.4 25.8 283 311-602 14-318 (792)
199 KOG2321 WD40 repeat protein [G 99.6 9.5E-14 2.1E-18 143.2 23.9 277 311-602 49-339 (703)
200 KOG0322 G-protein beta subunit 99.6 6E-15 1.3E-19 138.9 13.6 276 274-562 18-322 (323)
201 KOG1272 WD40-repeat-containing 99.6 2.5E-15 5.4E-20 151.3 11.7 265 313-595 129-398 (545)
202 KOG2110 Uncharacterized conser 99.6 1.5E-12 3.3E-17 128.3 30.3 251 316-574 49-343 (391)
203 PRK03629 tolB translocation pr 99.6 4.4E-13 9.6E-18 144.2 29.2 235 336-585 179-427 (429)
204 PF02239 Cytochrom_D1: Cytochr 99.6 1.3E-12 2.9E-17 136.8 31.4 276 326-604 5-345 (369)
205 KOG4227 WD40 repeat protein [G 99.6 1.3E-13 2.8E-18 136.0 20.6 294 255-562 53-386 (609)
206 KOG1310 WD40 repeat protein [G 99.6 2E-14 4.3E-19 147.2 14.4 219 351-570 44-310 (758)
207 KOG1445 Tumor-specific antigen 99.6 1.7E-14 3.8E-19 149.5 13.3 232 332-567 599-848 (1012)
208 KOG1240 Protein kinase contain 99.6 4E-13 8.6E-18 149.1 23.5 254 341-604 1034-1332(1431)
209 KOG2394 WD40 protein DMR-N9 [G 99.6 3.3E-13 7.1E-18 138.3 21.0 217 361-584 127-383 (636)
210 PRK04922 tolB translocation pr 99.6 1.1E-12 2.3E-17 141.7 26.2 235 336-585 184-432 (433)
211 KOG2111 Uncharacterized conser 99.6 9.4E-12 2E-16 120.6 29.3 270 316-600 8-316 (346)
212 PRK02889 tolB translocation pr 99.5 1.7E-12 3.8E-17 139.7 26.5 235 336-585 176-424 (427)
213 KOG3881 Uncharacterized conser 99.5 6.4E-13 1.4E-17 131.7 20.7 264 312-585 54-341 (412)
214 KOG2111 Uncharacterized conser 99.5 3.6E-12 7.8E-17 123.5 25.2 178 336-518 75-258 (346)
215 PRK05137 tolB translocation pr 99.5 5.2E-12 1.1E-16 136.5 29.4 234 336-585 182-432 (435)
216 KOG2139 WD40 repeat protein [G 99.5 7.9E-12 1.7E-16 122.8 25.6 280 315-603 100-428 (445)
217 KOG1524 WD40 repeat-containing 99.5 1.4E-13 2.9E-18 140.8 13.8 221 355-585 12-237 (737)
218 KOG4497 Uncharacterized conser 99.5 4.1E-13 9E-18 130.1 16.2 273 314-603 49-388 (447)
219 PF02239 Cytochrom_D1: Cytochr 99.5 5E-11 1.1E-15 125.0 32.7 263 303-572 26-356 (369)
220 KOG1272 WD40-repeat-containing 99.5 8.1E-14 1.7E-18 140.5 11.0 228 360-603 132-359 (545)
221 KOG2139 WD40 repeat protein [G 99.5 5.3E-12 1.2E-16 124.0 23.2 242 313-562 140-430 (445)
222 PRK01742 tolB translocation pr 99.5 1.7E-12 3.8E-17 139.8 21.9 219 307-544 197-426 (429)
223 KOG0649 WD40 repeat protein [G 99.5 4.9E-12 1.1E-16 118.1 20.9 231 359-603 12-271 (325)
224 KOG1334 WD40 repeat protein [G 99.5 3.8E-13 8.2E-18 136.5 14.7 255 349-604 134-422 (559)
225 KOG0644 Uncharacterized conser 99.5 4.6E-14 1E-18 150.7 8.3 232 279-518 199-470 (1113)
226 KOG4497 Uncharacterized conser 99.5 5.9E-13 1.3E-17 129.0 12.4 222 362-603 13-237 (447)
227 KOG3881 Uncharacterized conser 99.5 8.2E-12 1.8E-16 124.0 20.6 209 308-521 100-325 (412)
228 KOG1354 Serine/threonine prote 99.4 1.4E-11 3E-16 120.3 21.6 273 313-604 25-357 (433)
229 KOG1523 Actin-related protein 99.4 6.8E-12 1.5E-16 121.6 17.8 204 356-603 9-233 (361)
230 TIGR02800 propeller_TolB tol-p 99.4 1E-10 2.2E-15 125.8 28.0 233 336-583 170-416 (417)
231 PF10282 Lactonase: Lactonase, 99.4 1.8E-09 3.9E-14 113.0 36.3 273 329-604 2-320 (345)
232 KOG2315 Predicted translation 99.4 1.1E-10 2.4E-15 121.0 26.1 269 313-604 34-388 (566)
233 PRK00178 tolB translocation pr 99.4 2.1E-10 4.6E-15 123.9 28.8 234 337-585 180-427 (430)
234 PRK04792 tolB translocation pr 99.4 2.4E-10 5.2E-15 123.6 28.8 234 337-585 199-446 (448)
235 KOG1409 Uncharacterized conser 99.4 2.9E-11 6.2E-16 118.3 19.2 311 275-604 41-392 (404)
236 KOG2394 WD40 protein DMR-N9 [G 99.4 8.2E-12 1.8E-16 128.2 16.1 168 367-542 183-383 (636)
237 PRK04922 tolB translocation pr 99.4 2.2E-10 4.7E-15 123.8 25.5 203 307-518 197-413 (433)
238 PF08662 eIF2A: Eukaryotic tra 99.3 6E-11 1.3E-15 113.3 18.2 147 447-604 9-177 (194)
239 PRK05137 tolB translocation pr 99.3 4.3E-10 9.3E-15 121.6 27.2 205 306-519 194-415 (435)
240 PRK03629 tolB translocation pr 99.3 5E-10 1.1E-14 120.6 27.5 220 308-543 193-427 (429)
241 PF08662 eIF2A: Eukaryotic tra 99.3 1.5E-10 3.3E-15 110.5 20.9 118 442-571 58-186 (194)
242 PF10282 Lactonase: Lactonase, 99.3 6.2E-09 1.3E-13 109.0 34.7 266 313-583 36-345 (345)
243 TIGR02658 TTQ_MADH_Hv methylam 99.3 4.7E-09 1E-13 108.0 32.8 259 336-604 27-328 (352)
244 KOG2314 Translation initiation 99.3 2.7E-10 5.9E-15 117.6 23.1 269 316-599 213-560 (698)
245 KOG2321 WD40 repeat protein [G 99.3 1.6E-10 3.4E-15 119.8 19.6 243 355-604 49-300 (703)
246 KOG1064 RAVE (regulator of V-A 99.3 2.6E-11 5.7E-16 138.9 14.4 252 326-599 2180-2439(2439)
247 TIGR03300 assembly_YfgL outer 99.3 3.7E-09 8.1E-14 112.2 29.8 257 326-603 105-376 (377)
248 KOG4190 Uncharacterized conser 99.3 4.6E-11 1E-15 122.7 13.3 173 305-481 727-914 (1034)
249 PRK02889 tolB translocation pr 99.3 1.1E-09 2.5E-14 117.9 24.8 199 307-515 189-402 (427)
250 KOG0974 WD-repeat protein WDR6 99.3 2.3E-10 5.1E-15 126.1 19.0 200 358-564 88-289 (967)
251 TIGR02658 TTQ_MADH_Hv methylam 99.2 3.3E-08 7.2E-13 101.8 33.1 252 304-571 38-338 (352)
252 PRK01029 tolB translocation pr 99.2 1.4E-08 2.9E-13 109.3 29.9 237 337-585 166-424 (428)
253 TIGR03300 assembly_YfgL outer 99.2 1.1E-08 2.4E-13 108.6 28.7 258 326-604 65-336 (377)
254 KOG0974 WD-repeat protein WDR6 99.2 7.2E-10 1.6E-14 122.4 19.5 182 414-604 100-286 (967)
255 KOG0280 Uncharacterized conser 99.2 6.3E-09 1.4E-13 100.2 22.8 259 334-603 44-330 (339)
256 KOG2041 WD40 repeat protein [G 99.2 1.4E-09 3.1E-14 115.0 20.1 275 313-602 14-333 (1189)
257 PLN02919 haloacid dehalogenase 99.2 4.7E-08 1E-12 115.5 34.0 245 317-567 571-892 (1057)
258 KOG4547 WD40 repeat-containing 99.2 6.9E-09 1.5E-13 108.6 23.4 209 367-583 3-244 (541)
259 TIGR02800 propeller_TolB tol-p 99.2 9.8E-09 2.1E-13 110.4 25.6 201 307-516 183-397 (417)
260 KOG2315 Predicted translation 99.2 6.3E-09 1.4E-13 108.1 22.5 250 317-586 129-411 (566)
261 KOG1912 WD40 repeat protein [G 99.1 9.5E-09 2.1E-13 110.0 24.1 212 301-516 43-304 (1062)
262 KOG4547 WD40 repeat-containing 99.1 1.6E-08 3.4E-13 106.0 24.0 191 323-517 2-221 (541)
263 PRK00178 tolB translocation pr 99.1 2.7E-08 5.9E-13 107.5 26.9 202 307-517 192-407 (430)
264 COG5354 Uncharacterized protei 99.1 5E-08 1.1E-12 100.4 26.7 273 314-604 72-393 (561)
265 KOG1064 RAVE (regulator of V-A 99.1 5E-10 1.1E-14 128.7 13.2 192 309-521 2204-2403(2439)
266 KOG4532 WD40-like repeat conta 99.1 3.3E-08 7.1E-13 94.1 22.8 244 335-586 51-313 (344)
267 KOG1409 Uncharacterized conser 99.1 2.4E-09 5.3E-14 105.0 15.1 246 348-604 15-268 (404)
268 COG5354 Uncharacterized protei 99.1 4.7E-08 1E-12 100.6 23.7 272 312-604 31-346 (561)
269 PRK01029 tolB translocation pr 99.1 3.8E-08 8.3E-13 105.8 24.2 218 379-604 165-401 (428)
270 PF04762 IKI3: IKI3 family; I 99.0 1.2E-07 2.7E-12 110.1 29.0 274 311-603 73-376 (928)
271 KOG0882 Cyclophilin-related pe 99.0 7E-09 1.5E-13 105.0 16.0 256 312-571 8-313 (558)
272 PF13360 PQQ_2: PQQ-like domai 99.0 2.9E-07 6.3E-12 90.7 27.6 221 335-570 2-237 (238)
273 PRK04792 tolB translocation pr 99.0 8.2E-08 1.8E-12 104.0 25.3 201 308-517 212-426 (448)
274 KOG1354 Serine/threonine prote 99.0 1.2E-08 2.5E-13 100.2 15.9 200 314-518 85-361 (433)
275 PRK11138 outer membrane biogen 99.0 3.5E-07 7.5E-12 97.7 28.9 260 326-603 120-391 (394)
276 COG5170 CDC55 Serine/threonine 99.0 2.3E-08 5E-13 96.9 17.5 271 313-602 26-363 (460)
277 PLN02919 haloacid dehalogenase 99.0 3.3E-07 7.1E-12 108.5 30.7 239 361-604 571-886 (1057)
278 PF08450 SGL: SMP-30/Gluconola 99.0 8.4E-07 1.8E-11 88.3 28.3 223 362-594 4-244 (246)
279 KOG0280 Uncharacterized conser 99.0 8E-08 1.7E-12 92.7 19.2 202 312-518 68-286 (339)
280 PRK04043 tolB translocation pr 98.9 7.6E-07 1.6E-11 95.3 28.8 206 359-579 189-415 (419)
281 COG2706 3-carboxymuconate cycl 98.9 4.9E-06 1.1E-10 83.1 32.1 269 311-584 37-345 (346)
282 COG2706 3-carboxymuconate cycl 98.9 4.5E-06 9.7E-11 83.4 31.6 266 335-603 15-318 (346)
283 KOG0309 Conserved WD40 repeat- 98.9 1.2E-08 2.6E-13 108.7 13.8 283 313-603 24-336 (1081)
284 KOG4190 Uncharacterized conser 98.9 2.9E-09 6.3E-14 109.7 7.7 138 434-573 775-916 (1034)
285 COG4946 Uncharacterized protei 98.9 1.8E-06 4E-11 88.2 27.5 176 321-505 327-507 (668)
286 KOG3914 WD repeat protein WDR4 98.8 7.7E-08 1.7E-12 96.6 15.2 160 361-522 66-229 (390)
287 KOG1645 RING-finger-containing 98.8 1.5E-07 3.3E-12 94.4 16.9 259 338-603 175-458 (463)
288 KOG0309 Conserved WD40 repeat- 98.8 3.1E-08 6.6E-13 105.6 12.3 258 300-564 56-340 (1081)
289 KOG1912 WD40 repeat protein [G 98.8 4E-07 8.7E-12 97.9 20.6 244 312-564 14-305 (1062)
290 KOG2041 WD40 repeat protein [G 98.8 2.8E-07 6E-12 98.1 19.1 234 305-550 63-325 (1189)
291 PF04762 IKI3: IKI3 family; I 98.8 3.8E-06 8.3E-11 97.8 30.4 247 312-564 119-457 (928)
292 KOG2066 Vacuolar assembly/sort 98.8 2.3E-07 5E-12 100.5 18.1 186 313-516 39-233 (846)
293 KOG4714 Nucleoporin [Nuclear s 98.8 4.9E-08 1.1E-12 92.6 11.5 165 307-474 83-255 (319)
294 KOG1832 HIV-1 Vpr-binding prot 98.8 3.1E-09 6.8E-14 114.8 3.3 265 300-593 1088-1376(1516)
295 PF07433 DUF1513: Protein of u 98.8 1E-05 2.2E-10 80.8 27.7 232 360-598 7-278 (305)
296 KOG1275 PAB-dependent poly(A) 98.8 1.3E-07 2.8E-12 103.3 14.9 185 368-561 146-340 (1118)
297 PF15492 Nbas_N: Neuroblastoma 98.7 7.8E-06 1.7E-10 79.4 25.3 239 319-576 3-272 (282)
298 PF13360 PQQ_2: PQQ-like domai 98.7 4.4E-06 9.6E-11 82.3 24.7 216 378-604 2-228 (238)
299 PRK11138 outer membrane biogen 98.7 2.8E-06 6E-11 90.8 24.4 258 326-604 69-351 (394)
300 KOG2695 WD40 repeat protein [G 98.7 4E-08 8.6E-13 96.6 8.9 165 417-585 228-402 (425)
301 KOG4714 Nucleoporin [Nuclear s 98.7 4E-07 8.6E-12 86.6 14.5 197 316-517 39-255 (319)
302 KOG1920 IkappaB kinase complex 98.6 8.4E-06 1.8E-10 92.3 25.1 271 314-603 69-362 (1265)
303 COG4946 Uncharacterized protei 98.6 4.4E-05 9.6E-10 78.4 27.7 251 327-595 237-507 (668)
304 KOG4532 WD40-like repeat conta 98.6 9.9E-06 2.1E-10 77.6 20.3 234 326-563 84-331 (344)
305 PRK04043 tolB translocation pr 98.6 4.6E-05 1E-09 81.6 27.9 199 380-595 170-386 (419)
306 KOG3914 WD repeat protein WDR4 98.6 9E-07 2E-11 89.1 13.4 153 445-604 64-221 (390)
307 PF08450 SGL: SMP-30/Gluconola 98.6 0.00016 3.5E-09 71.8 29.7 217 318-551 4-243 (246)
308 KOG2314 Translation initiation 98.5 1.3E-05 2.9E-10 83.6 21.2 247 315-573 251-574 (698)
309 PF00400 WD40: WD domain, G-be 98.5 2.9E-07 6.3E-12 63.1 6.4 38 304-342 2-39 (39)
310 cd00216 PQQ_DH Dehydrogenases 98.5 0.00011 2.5E-09 80.5 28.5 263 326-604 61-422 (488)
311 KOG1275 PAB-dependent poly(A) 98.5 7.7E-06 1.7E-10 89.9 18.5 178 414-603 148-339 (1118)
312 PF00400 WD40: WD domain, G-be 98.5 4.8E-07 1E-11 62.0 6.1 39 347-385 1-39 (39)
313 KOG2695 WD40 repeat protein [G 98.4 9.2E-07 2E-11 87.2 9.6 150 330-484 228-387 (425)
314 PF07433 DUF1513: Protein of u 98.4 0.00047 1E-08 69.1 27.5 233 317-561 8-283 (305)
315 KOG2114 Vacuolar assembly/sort 98.4 0.00011 2.4E-09 80.8 24.4 221 315-576 27-257 (933)
316 KOG1832 HIV-1 Vpr-binding prot 98.4 2.5E-07 5.5E-12 100.5 4.1 215 348-585 1092-1311(1516)
317 cd00216 PQQ_DH Dehydrogenases 98.3 0.00051 1.1E-08 75.4 29.4 237 327-574 111-435 (488)
318 COG5170 CDC55 Serine/threonine 98.3 4.9E-06 1.1E-10 81.0 11.7 238 266-515 34-366 (460)
319 PF08553 VID27: VID27 cytoplas 98.3 0.00071 1.5E-08 76.5 29.2 144 369-515 493-646 (794)
320 KOG4649 PQQ (pyrrolo-quinoline 98.3 0.00086 1.9E-08 64.4 25.3 257 326-604 63-349 (354)
321 PF15492 Nbas_N: Neuroblastoma 98.3 0.00023 4.9E-09 69.4 21.1 187 316-519 46-262 (282)
322 PF06433 Me-amine-dh_H: Methyl 98.3 0.0018 3.8E-08 65.8 28.3 244 318-574 40-331 (342)
323 KOG4649 PQQ (pyrrolo-quinoline 98.3 0.0013 2.9E-08 63.1 25.7 186 321-514 18-205 (354)
324 KOG2066 Vacuolar assembly/sort 98.2 0.00012 2.6E-09 79.9 19.0 188 357-563 39-233 (846)
325 KOG1008 Uncharacterized conser 98.1 7.5E-07 1.6E-11 94.3 1.1 198 313-516 56-275 (783)
326 KOG3617 WD40 and TPR repeat-co 98.1 5.8E-05 1.2E-09 82.4 15.1 257 316-586 62-366 (1416)
327 PRK02888 nitrous-oxide reducta 98.1 0.00097 2.1E-08 72.8 24.6 206 368-576 140-427 (635)
328 PF00780 CNH: CNH domain; Int 98.1 0.0057 1.2E-07 61.7 28.6 231 326-575 7-267 (275)
329 KOG2114 Vacuolar assembly/sort 98.1 0.00017 3.8E-09 79.3 18.0 188 413-604 35-241 (933)
330 COG3391 Uncharacterized conser 98.0 0.011 2.4E-07 62.7 31.1 262 315-585 32-308 (381)
331 PF06433 Me-amine-dh_H: Methyl 98.0 0.003 6.6E-08 64.1 25.1 259 336-604 17-318 (342)
332 PF14583 Pectate_lyase22: Olig 98.0 0.016 3.4E-07 60.1 30.7 273 320-603 42-378 (386)
333 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.0 0.007 1.5E-07 66.9 30.4 273 326-604 69-488 (527)
334 KOG0882 Cyclophilin-related pe 98.0 3.3E-05 7.2E-10 78.9 10.2 212 356-571 8-239 (558)
335 PRK02888 nitrous-oxide reducta 98.0 0.00072 1.6E-08 73.8 20.9 182 321-517 200-405 (635)
336 KOG1645 RING-finger-containing 98.0 0.0002 4.4E-09 72.4 15.3 83 306-390 186-269 (463)
337 PF03178 CPSF_A: CPSF A subuni 98.0 0.0013 2.9E-08 68.1 22.2 215 379-602 2-261 (321)
338 COG0823 TolB Periplasmic compo 97.9 0.0011 2.4E-08 70.8 21.0 228 347-585 182-423 (425)
339 KOG1008 Uncharacterized conser 97.9 8.9E-06 1.9E-10 86.4 4.3 203 358-563 57-275 (783)
340 PF08596 Lgl_C: Lethal giant l 97.9 0.0031 6.6E-08 66.8 23.2 234 315-552 3-325 (395)
341 PF11768 DUF3312: Protein of u 97.9 0.012 2.6E-07 63.0 27.2 111 446-563 208-329 (545)
342 COG3391 Uncharacterized conser 97.9 0.031 6.7E-07 59.4 30.6 237 359-602 32-279 (381)
343 PF14727 PHTB1_N: PTHB1 N-term 97.9 0.037 8.1E-07 58.7 30.7 274 323-602 34-356 (418)
344 PF04053 Coatomer_WDAD: Coatom 97.8 0.0073 1.6E-07 64.9 25.2 222 311-563 30-262 (443)
345 PF11768 DUF3312: Protein of u 97.8 0.001 2.2E-08 71.0 17.6 122 391-517 198-330 (545)
346 COG3386 Gluconolactonase [Carb 97.7 0.017 3.7E-07 59.0 24.8 223 364-595 31-274 (307)
347 PF04841 Vps16_N: Vps16, N-ter 97.7 0.02 4.3E-07 61.3 25.9 190 381-585 63-269 (410)
348 PF08596 Lgl_C: Lethal giant l 97.7 0.0048 1E-07 65.3 20.7 231 359-603 3-287 (395)
349 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.7 0.06 1.3E-06 59.6 29.8 241 326-575 120-502 (527)
350 PF04841 Vps16_N: Vps16, N-ter 97.7 0.06 1.3E-06 57.7 28.7 168 337-517 62-247 (410)
351 KOG1920 IkappaB kinase complex 97.6 0.0096 2.1E-07 68.4 22.8 232 357-603 68-319 (1265)
352 KOG3617 WD40 and TPR repeat-co 97.6 0.00022 4.9E-09 78.0 9.6 194 361-572 19-228 (1416)
353 PF02897 Peptidase_S9_N: Proly 97.6 0.046 9.9E-07 58.7 26.9 243 315-568 125-409 (414)
354 KOG3621 WD40 repeat-containing 97.6 0.00045 9.8E-09 74.7 10.9 142 444-585 34-180 (726)
355 KOG2395 Protein involved in va 97.5 0.0036 7.9E-08 65.8 16.6 145 368-515 344-499 (644)
356 PF05096 Glu_cyclase_2: Glutam 97.5 0.087 1.9E-06 52.0 25.0 198 390-594 34-249 (264)
357 COG3490 Uncharacterized protei 97.5 0.072 1.6E-06 52.3 23.6 210 360-572 70-319 (366)
358 PF03178 CPSF_A: CPSF A subuni 97.5 0.022 4.7E-07 59.0 22.2 171 337-516 3-202 (321)
359 PF00930 DPPIV_N: Dipeptidyl p 97.5 0.03 6.6E-07 58.8 23.2 244 335-596 22-301 (353)
360 PF06977 SdiA-regulated: SdiA- 97.4 0.12 2.6E-06 51.0 25.1 200 307-513 15-247 (248)
361 PF00930 DPPIV_N: Dipeptidyl p 97.4 0.15 3.2E-06 53.5 27.5 262 313-596 42-348 (353)
362 KOG1897 Damage-specific DNA bi 97.4 0.063 1.4E-06 60.8 25.0 281 313-604 530-854 (1096)
363 KOG2444 WD40 repeat protein [G 97.4 0.00029 6.2E-09 66.6 5.9 141 457-604 32-175 (238)
364 smart00320 WD40 WD40 repeats. 97.4 0.00044 9.6E-09 45.2 5.4 38 304-342 3-40 (40)
365 KOG4499 Ca2+-binding protein R 97.4 0.041 8.9E-07 52.4 19.7 221 369-593 27-271 (310)
366 PF14870 PSII_BNR: Photosynthe 97.3 0.24 5.2E-06 50.4 26.8 272 313-603 16-301 (302)
367 smart00320 WD40 WD40 repeats. 97.3 0.00084 1.8E-08 43.8 6.1 39 565-604 2-40 (40)
368 PF08553 VID27: VID27 cytoplas 97.3 0.0096 2.1E-07 67.5 17.7 142 414-562 494-646 (794)
369 COG3386 Gluconolactonase [Carb 97.3 0.11 2.4E-06 53.1 23.9 216 320-551 31-273 (307)
370 PF14783 BBS2_Mid: Ciliary BBS 97.3 0.019 4.1E-07 48.7 15.0 104 316-426 2-109 (111)
371 KOG3621 WD40 repeat-containing 97.3 0.034 7.4E-07 60.6 20.7 137 321-463 41-189 (726)
372 PF06977 SdiA-regulated: SdiA- 97.3 0.11 2.3E-06 51.4 22.5 196 401-602 24-246 (248)
373 PF04053 Coatomer_WDAD: Coatom 97.2 0.023 4.9E-07 61.2 18.8 141 441-603 30-170 (443)
374 KOG4640 Anaphase-promoting com 97.2 0.0017 3.6E-08 69.6 9.7 80 313-395 20-100 (665)
375 KOG2079 Vacuolar assembly/sort 97.0 0.004 8.8E-08 70.5 11.2 100 326-426 99-200 (1206)
376 KOG1897 Damage-specific DNA bi 97.0 0.43 9.2E-06 54.4 26.6 276 316-602 586-894 (1096)
377 PF02897 Peptidase_S9_N: Proly 97.0 0.31 6.7E-06 52.3 25.6 231 359-594 125-389 (414)
378 KOG2395 Protein involved in va 97.0 0.021 4.5E-07 60.3 15.3 141 414-562 347-499 (644)
379 KOG2444 WD40 repeat protein [G 97.0 0.0014 3.1E-08 62.0 6.3 144 328-474 32-178 (238)
380 PF00780 CNH: CNH domain; Int 96.9 0.45 9.8E-06 47.8 24.6 218 367-604 5-253 (275)
381 PHA02713 hypothetical protein; 96.9 0.11 2.3E-06 58.2 21.5 199 368-575 303-545 (557)
382 PF14783 BBS2_Mid: Ciliary BBS 96.9 0.064 1.4E-06 45.5 14.8 100 360-468 2-109 (111)
383 PHA02713 hypothetical protein; 96.9 0.08 1.7E-06 59.1 19.7 182 414-604 305-531 (557)
384 COG0823 TolB Periplasmic compo 96.8 0.061 1.3E-06 57.6 17.8 188 311-506 190-389 (425)
385 TIGR03074 PQQ_membr_DH membran 96.8 0.36 7.8E-06 55.5 24.8 237 326-572 194-486 (764)
386 PF05096 Glu_cyclase_2: Glutam 96.8 0.4 8.7E-06 47.4 21.6 198 348-551 34-249 (264)
387 PF14655 RAB3GAP2_N: Rab3 GTPa 96.6 0.86 1.9E-05 48.5 24.1 42 535-576 309-350 (415)
388 PRK13616 lipoprotein LpqB; Pro 96.5 0.26 5.7E-06 55.1 20.8 189 355-559 347-564 (591)
389 KOG4441 Proteins containing BT 96.5 0.26 5.6E-06 55.1 20.3 228 326-565 285-548 (571)
390 PRK13616 lipoprotein LpqB; Pro 96.4 0.16 3.4E-06 56.9 18.0 175 422-603 328-522 (591)
391 PF05694 SBP56: 56kDa selenium 96.4 1.7 3.8E-05 45.8 24.5 194 368-564 86-343 (461)
392 KOG4640 Anaphase-promoting com 96.3 0.018 3.8E-07 62.1 9.4 93 400-496 22-115 (665)
393 KOG2079 Vacuolar assembly/sort 96.3 0.017 3.7E-07 65.7 9.5 99 496-599 97-198 (1206)
394 KOG4441 Proteins containing BT 96.2 0.15 3.3E-06 56.9 16.2 218 368-599 284-534 (571)
395 PF05694 SBP56: 56kDa selenium 96.0 1 2.2E-05 47.6 20.1 153 321-475 137-344 (461)
396 PRK10115 protease 2; Provision 96.0 4 8.7E-05 46.9 32.8 243 314-566 127-397 (686)
397 TIGR03118 PEPCTERM_chp_1 conse 96.0 1.9 4.2E-05 43.2 21.9 210 316-526 25-289 (336)
398 KOG1916 Nuclear protein, conta 96.0 0.00094 2E-08 73.9 -2.1 118 334-454 109-235 (1283)
399 PHA03098 kelch-like protein; P 96.0 0.32 6.8E-06 54.2 17.8 183 326-518 295-513 (534)
400 COG3204 Uncharacterized protei 95.9 1.3 2.9E-05 44.1 19.4 163 353-518 81-265 (316)
401 PRK13684 Ycf48-like protein; P 95.9 2.7 5.8E-05 43.7 28.8 271 313-604 45-329 (334)
402 COG3204 Uncharacterized protei 95.8 0.51 1.1E-05 46.9 15.8 162 440-601 82-258 (316)
403 TIGR03074 PQQ_membr_DH membran 95.7 2.6 5.6E-05 48.7 23.6 113 369-482 194-353 (764)
404 PF10647 Gmad1: Lipoprotein Lp 95.5 1.1 2.4E-05 44.6 17.6 146 445-597 25-186 (253)
405 PF14583 Pectate_lyase22: Olig 95.4 4.1 9E-05 42.6 22.6 224 363-597 41-303 (386)
406 COG5167 VID27 Protein involved 95.3 0.56 1.2E-05 49.7 14.8 145 368-516 478-632 (776)
407 COG1520 FOG: WD40-like repeat 95.1 5.3 0.00011 42.1 23.7 197 368-574 68-279 (370)
408 PF14727 PHTB1_N: PTHB1 N-term 95.1 5.7 0.00012 42.4 28.7 146 368-515 36-203 (418)
409 COG3490 Uncharacterized protei 94.9 1.5 3.2E-05 43.5 15.7 197 307-515 113-347 (366)
410 KOG3630 Nuclear pore complex, 94.9 0.24 5.3E-06 57.1 11.8 129 419-550 120-260 (1405)
411 PHA02790 Kelch-like protein; P 94.9 1.6 3.5E-05 47.9 18.3 181 326-517 272-471 (480)
412 PHA03098 kelch-like protein; P 94.8 1.3 2.9E-05 49.2 17.8 190 368-566 294-514 (534)
413 PF12894 Apc4_WD40: Anaphase-p 94.6 0.084 1.8E-06 37.5 4.9 34 357-391 11-44 (47)
414 PF10168 Nup88: Nuclear pore c 94.6 4.3 9.4E-05 46.5 21.2 75 358-433 85-181 (717)
415 PRK10115 protease 2; Provision 94.6 11 0.00024 43.3 27.3 112 358-472 127-254 (686)
416 TIGR03548 mutarot_permut cycli 94.4 5.1 0.00011 41.3 19.9 104 414-518 74-196 (323)
417 KOG1916 Nuclear protein, conta 94.3 0.082 1.8E-06 59.2 6.2 159 440-604 129-321 (1283)
418 KOG3630 Nuclear pore complex, 94.2 0.36 7.9E-06 55.7 11.3 144 359-505 102-262 (1405)
419 PF12894 Apc4_WD40: Anaphase-p 94.2 0.13 2.9E-06 36.5 5.2 34 533-567 11-44 (47)
420 COG5276 Uncharacterized conser 94.2 6.6 0.00014 39.2 22.1 152 356-518 85-243 (370)
421 TIGR02604 Piru_Ver_Nterm putat 93.7 2.4 5.2E-05 44.7 15.9 146 444-595 14-202 (367)
422 PF15390 DUF4613: Domain of un 93.6 2.6 5.6E-05 45.9 15.6 154 357-517 19-187 (671)
423 PF10168 Nup88: Nuclear pore c 93.5 10 0.00023 43.5 21.5 74 445-519 86-182 (717)
424 PF15390 DUF4613: Domain of un 93.5 1.6 3.5E-05 47.4 13.8 152 443-604 19-184 (671)
425 PLN02193 nitrile-specifier pro 93.4 14 0.00031 40.3 22.5 193 368-567 175-414 (470)
426 COG3823 Glutamine cyclotransfe 93.3 4.8 0.0001 38.2 14.9 176 414-595 57-248 (262)
427 PHA02790 Kelch-like protein; P 93.2 5.2 0.00011 43.9 18.1 145 368-518 271-425 (480)
428 KOG2280 Vacuolar assembly/sort 93.2 4.8 0.0001 45.0 17.1 194 313-520 43-250 (829)
429 PF12234 Rav1p_C: RAVE protein 93.1 2.7 5.8E-05 47.0 15.4 100 414-515 42-155 (631)
430 PF12234 Rav1p_C: RAVE protein 92.9 2.5 5.4E-05 47.3 14.7 117 443-562 29-155 (631)
431 PF14761 HPS3_N: Hermansky-Pud 92.7 9.7 0.00021 36.5 17.6 101 416-518 31-165 (215)
432 PF14781 BBS2_N: Ciliary BBSom 92.5 5 0.00011 35.3 13.1 118 318-438 3-132 (136)
433 PF08728 CRT10: CRT10; InterP 92.4 2.1 4.6E-05 48.3 13.5 116 488-604 102-244 (717)
434 PF08728 CRT10: CRT10; InterP 92.2 6.5 0.00014 44.5 17.0 103 412-515 113-245 (717)
435 COG1520 FOG: WD40-like repeat 92.1 18 0.00038 38.1 29.9 194 326-525 68-277 (370)
436 PLN02153 epithiospecifier prot 92.0 17 0.00038 37.7 22.4 64 414-477 87-171 (341)
437 PF03022 MRJP: Major royal jel 91.9 13 0.00029 37.6 17.9 170 380-551 35-253 (287)
438 PF07995 GSDH: Glucose / Sorbo 91.8 18 0.00038 37.6 21.6 71 487-558 253-330 (331)
439 PLN00033 photosystem II stabil 91.6 21 0.00046 38.0 31.5 151 446-603 241-396 (398)
440 KOG2063 Vacuolar assembly/sort 91.6 16 0.00036 42.4 19.7 235 326-572 26-277 (877)
441 PF07995 GSDH: Glucose / Sorbo 91.6 19 0.00041 37.4 25.5 236 359-601 3-330 (331)
442 PF10313 DUF2415: Uncharacteri 91.6 0.78 1.7E-05 31.7 5.7 31 314-344 1-33 (43)
443 PLN02153 epithiospecifier prot 91.4 20 0.00043 37.2 22.0 146 368-518 85-286 (341)
444 PF14655 RAB3GAP2_N: Rab3 GTPa 91.3 2 4.4E-05 45.7 11.5 90 351-440 301-407 (415)
445 TIGR03547 muta_rot_YjhT mutatr 91.0 22 0.00047 37.0 20.9 51 414-464 65-128 (346)
446 COG5167 VID27 Protein involved 90.4 4.9 0.00011 43.0 12.9 140 414-563 481-632 (776)
447 TIGR02604 Piru_Ver_Nterm putat 90.4 26 0.00056 36.9 25.4 144 314-464 14-204 (367)
448 COG5276 Uncharacterized conser 90.4 21 0.00046 35.8 28.0 273 313-604 86-367 (370)
449 KOG2280 Vacuolar assembly/sort 90.2 8.2 0.00018 43.3 14.9 178 314-498 84-271 (829)
450 PF13449 Phytase-like: Esteras 90.1 17 0.00037 37.6 17.0 149 442-592 18-230 (326)
451 COG3292 Predicted periplasmic 90.1 33 0.0007 37.6 21.0 199 358-565 290-493 (671)
452 KOG4460 Nuclear pore complex, 89.7 7.7 0.00017 41.7 13.6 96 359-478 105-203 (741)
453 TIGR03548 mutarot_permut cycli 89.5 27 0.0006 35.8 22.0 106 368-477 72-198 (323)
454 PF10647 Gmad1: Lipoprotein Lp 89.4 24 0.00052 35.0 20.8 150 401-556 26-188 (253)
455 PF14870 PSII_BNR: Photosynthe 89.0 29 0.00063 35.4 23.4 142 413-560 156-301 (302)
456 KOG4659 Uncharacterized conser 88.9 42 0.0009 40.3 19.6 80 310-393 344-433 (1899)
457 PF07250 Glyoxal_oxid_N: Glyox 88.8 9.4 0.0002 37.6 13.0 147 425-573 48-207 (243)
458 KOG2377 Uncharacterized conser 88.6 11 0.00024 39.9 13.7 141 447-592 26-169 (657)
459 PF14781 BBS2_N: Ciliary BBSom 88.4 17 0.00037 32.1 13.3 115 362-478 3-130 (136)
460 PF02333 Phytase: Phytase; In 88.1 38 0.00083 35.7 20.9 196 403-604 58-288 (381)
461 PF10313 DUF2415: Uncharacteri 88.0 1.4 3.1E-05 30.4 4.8 31 358-388 1-34 (43)
462 PF10433 MMS1_N: Mono-function 87.9 48 0.001 36.6 27.2 251 324-585 220-503 (504)
463 PLN02193 nitrile-specifier pro 87.5 48 0.001 36.2 23.9 147 368-518 228-412 (470)
464 PRK14131 N-acetylneuraminic ac 87.3 43 0.00092 35.4 19.7 51 414-464 86-149 (376)
465 COG3823 Glutamine cyclotransfe 86.4 31 0.00067 32.9 14.8 171 326-503 56-245 (262)
466 TIGR03606 non_repeat_PQQ dehyd 86.2 21 0.00046 38.6 14.9 115 439-553 25-165 (454)
467 PF07569 Hira: TUP1-like enhan 86.0 4.3 9.2E-05 39.4 8.8 63 540-604 17-93 (219)
468 COG4590 ABC-type uncharacteriz 85.8 5.2 0.00011 42.1 9.5 169 347-519 210-389 (733)
469 KOG4499 Ca2+-binding protein R 85.7 37 0.00079 33.0 17.6 136 357-496 108-263 (310)
470 COG5290 IkappaB kinase complex 85.6 9.5 0.00021 43.0 11.8 279 319-604 207-534 (1243)
471 PF05935 Arylsulfotrans: Aryls 85.5 61 0.0013 35.5 21.7 151 421-575 126-313 (477)
472 smart00036 CNH Domain found in 85.5 46 0.001 34.0 27.5 234 327-573 14-280 (302)
473 PF07569 Hira: TUP1-like enhan 85.5 4.5 9.8E-05 39.2 8.7 72 493-565 17-97 (219)
474 KOG2247 WD40 repeat-containing 85.4 0.18 3.9E-06 53.2 -1.1 148 443-600 34-182 (615)
475 PF03022 MRJP: Major royal jel 85.3 45 0.00098 33.8 18.6 160 423-585 34-243 (287)
476 KOG1898 Splicing factor 3b, su 85.3 57 0.0012 38.4 18.0 108 327-434 550-676 (1205)
477 PF14761 HPS3_N: Hermansky-Pud 84.6 39 0.00084 32.5 15.6 102 327-433 29-165 (215)
478 PRK13684 Ycf48-like protein; P 84.1 56 0.0012 33.9 23.7 141 415-561 185-329 (334)
479 KOG2377 Uncharacterized conser 84.1 20 0.00044 38.0 12.8 139 334-475 41-187 (657)
480 PRK14131 N-acetylneuraminic ac 83.9 61 0.0013 34.2 22.2 26 368-393 84-120 (376)
481 TIGR02276 beta_rpt_yvtn 40-res 83.6 5.8 0.00013 26.7 6.3 40 367-406 1-41 (42)
482 PF05935 Arylsulfotrans: Aryls 83.4 76 0.0016 34.8 26.3 138 336-482 128-310 (477)
483 KOG1898 Splicing factor 3b, su 83.3 64 0.0014 38.0 17.3 174 380-562 854-1047(1205)
484 TIGR03547 muta_rot_YjhT mutatr 83.1 61 0.0013 33.6 21.0 26 368-393 63-99 (346)
485 PF10214 Rrn6: RNA polymerase 83.0 1E+02 0.0022 36.0 26.5 157 355-517 77-277 (765)
486 KOG1900 Nuclear pore complex, 82.6 9.4 0.0002 45.5 10.9 169 300-474 66-273 (1311)
487 PF02333 Phytase: Phytase; In 81.9 73 0.0016 33.6 23.3 201 368-572 67-300 (381)
488 PF08801 Nucleoporin_N: Nup133 81.5 45 0.00097 35.8 15.4 30 535-564 191-220 (422)
489 PF11715 Nup160: Nucleoporin N 81.1 7.4 0.00016 43.4 9.5 72 326-397 158-258 (547)
490 PF10433 MMS1_N: Mono-function 80.5 97 0.0021 34.1 24.0 228 366-603 219-473 (504)
491 KOG1900 Nuclear pore complex, 80.4 12 0.00026 44.7 10.7 137 463-604 97-270 (1311)
492 KOG3616 Selective LIM binding 80.1 15 0.00032 41.2 10.7 67 314-385 15-81 (1636)
493 PF11715 Nup160: Nucleoporin N 79.5 8.1 0.00018 43.1 9.1 77 496-572 156-257 (547)
494 TIGR02276 beta_rpt_yvtn 40-res 79.0 9.5 0.00021 25.6 6.1 40 543-583 1-41 (42)
495 PF08801 Nucleoporin_N: Nup133 78.2 12 0.00025 40.3 9.5 30 488-517 191-220 (422)
496 PF10214 Rrn6: RNA polymerase 78.0 1.5E+02 0.0032 34.8 27.8 115 444-564 146-277 (765)
497 PF11635 Med16: Mediator compl 77.6 78 0.0017 36.9 16.5 67 534-601 260-345 (753)
498 COG3292 Predicted periplasmic 77.4 1.2E+02 0.0026 33.4 18.1 272 314-602 165-443 (671)
499 TIGR03118 PEPCTERM_chp_1 conse 77.3 88 0.0019 31.8 24.5 221 360-585 25-307 (336)
500 COG4257 Vgb Streptogramin lyas 76.5 87 0.0019 31.3 21.0 198 358-564 62-263 (353)
No 1
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.4e-85 Score=655.67 Aligned_cols=461 Identities=51% Similarity=0.914 Sum_probs=431.7
Q ss_pred cccccCCCCceeeeCcChhhhcCCcCCCCCCCCcccccccccccccceeeeeccCchhhhhhccceeeeeeeeCCCCCcc
Q 007411 81 QSRPIDPSQHFIAYNPTYEQLWAPIYGPAHPYAKDGIAQGMRNHKLGFVEDASIDSFVFDEQYNTFYKYGYAADPAGNNY 160 (604)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (604)
....+||+.++|.|||+|++||+|+.||+|||++.++ .+|
T Consensus 41 ~v~~~dp~~ke~~~np~~~~l~~p~~Gp~n~f~s~q~----------------------------------------~~~ 80 (503)
T KOG0282|consen 41 QVAIVDPKTKEIKSNPKFDQLFKPESGPVNHFKSEQQ----------------------------------------TRF 80 (503)
T ss_pred cccccCCcchhhccCCchhhhcccccCCCCcchhhhh----------------------------------------hhh
Confidence 3567999999999999999999999999999996643 568
Q ss_pred cCChhhhhhcCCcceeeccccHHHHHHHHHhhhhccccCCcccCCCCCCCCCCCcccccccCCCCCCCCccCccccccHH
Q 007411 161 VGDFEALEKNNGVSVYNIRQNEQKKRKLEKKQEAEEVDGTAVDVDPAEFNNPATDTWLMKNRKSPWAGKKEGVQTELSEE 240 (604)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 240 (604)
||+.+.++++.|.++|+..++++++||++++ ++.+.+++|.|||.++.+ |..+.+++++
T Consensus 81 vg~~~~ae~~~g~t~fe~~~k~~~~Rk~~~~-------------dd~~~idg~~gpWsr~~d--------E~~vak~~~~ 139 (503)
T KOG0282|consen 81 VGDVKKAEAEKGVSLFESKKKGGEQRKRVGN-------------DDSADIDGYSGPWSRYVD--------EKTVAKPTPE 139 (503)
T ss_pred ccchhhhhcccCceeecccccccchhhhccC-------------CChhhccCCCCCcccccc--------cccccCCCcc
Confidence 9999999999999999998888877776541 234558999999999887 4556677888
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCccccCcceeeccCccccccceeecCCCccccC--CCCcccCcceeEEecCCCCCeEE
Q 007411 241 QKKYAEEYAKKKEEKGNAGGEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAA--NDHCYIPKRLVHTWSGHTKGVSA 318 (604)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~--~~~~~~p~~~i~tl~gH~~~V~~ 318 (604)
+++.+++...++++++...+.......+.+++|+++..|||+|+|+++|.+.... ...||+|++++++|.||+.+|++
T Consensus 140 ~~~~~de~~~k~~e~~~~~e~~~~~~ee~s~~h~k~~~dyq~r~~l~~P~dv~vnlR~~rc~~Pkk~~~~~~gH~kgvsa 219 (503)
T KOG0282|consen 140 EQKQMDEIVKKRQEKKKEKEDSEHMAEESSTLHGKSLFDYQGRSYLQKPKDVGVNLREERCYLPKKLSHNLSGHTKGVSA 219 (503)
T ss_pred hhhhhhhhhhhhhhhccccccccccccccccccccchhhccccccccCCcccCCccccceeeccHhheeeccCCccccch
Confidence 8888888888888887666667778899999999999999999999999997544 46999999999999999999999
Q ss_pred EEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCC
Q 007411 319 IRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG 398 (604)
Q Consensus 319 l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~ 398 (604)
+.|+|..+++|++|++|+.|+||+++..+.++++|.+|..+|++++|+++|..|+|+++|+.|++||+++|+++.++..+
T Consensus 220 i~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~ 299 (503)
T KOG0282|consen 220 IQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLD 299 (503)
T ss_pred hhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecC
Confidence 99999669999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEE
Q 007411 399 KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVI 478 (604)
Q Consensus 399 ~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~ 478 (604)
..+.|+.+.|++ .++|++|+.|+.|+.||+|++++++++..|.++|..|.|.++|++|+++++|++++||+.+.+..+
T Consensus 300 ~~~~cvkf~pd~--~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~i 377 (503)
T KOG0282|consen 300 KVPTCVKFHPDN--QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPI 377 (503)
T ss_pred CCceeeecCCCC--CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccc
Confidence 999999999977 589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEE
Q 007411 479 KYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCW 558 (604)
Q Consensus 479 ~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~ 558 (604)
+.+....++.++++..+|+++++++.+.|+.|.+|.+....+++..+.+.||..+++.+.+.|||||++|++|+++|.++
T Consensus 378 k~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~ 457 (503)
T KOG0282|consen 378 KNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVN 457 (503)
T ss_pred hhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007411 559 FWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 559 iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
+||+++.+++..+++|.++|+.+.|+|...+.|||||+||.|+|||
T Consensus 458 ~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 458 FWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 9999999999999999999999999999999999999999999997
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.8e-43 Score=343.96 Aligned_cols=292 Identities=23% Similarity=0.420 Sum_probs=257.0
Q ss_pred ceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEE
Q 007411 304 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKY 383 (604)
Q Consensus 304 ~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~v 383 (604)
++-.++.||.++|.|++|+|+ +..|++|+.|.++++||+ .+..++.+.++|...|.|++|+|||+.|++|+.||+|++
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~-g~~l~tGsGD~TvR~WD~-~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~l 183 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPT-GSRLVTGSGDTTVRLWDL-DTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRL 183 (480)
T ss_pred eeccccCCCCCcEEEEEecCC-CceEEecCCCceEEeecc-CCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEE
Confidence 567789999999999999998 999999999999999999 688999999999999999999999999999999999999
Q ss_pred EECCCCcEEEEeeCCCcc--eEEEEccCC--CCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEE
Q 007411 384 WDTETGQVIRTFSTGKIP--YVVKLNPDD--DKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFV 459 (604)
Q Consensus 384 WD~~t~~~i~~~~~~~~~--~~~~~~~~~--~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~ 459 (604)
||..+|+++..--.+|.. .+++|.|.. ....+|++++.||.|+|||+..+.++..+.+|..+|+|+.|-.+| +|+
T Consensus 184 wdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liy 262 (480)
T KOG0271|consen 184 WDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIY 262 (480)
T ss_pred ecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEE
Confidence 999999887665555544 455555432 234589999999999999999999999999999999999997655 999
Q ss_pred EEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEc-----------CCCC-------------------------EEEE
Q 007411 460 TSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLH-----------PNTN-------------------------WLAA 503 (604)
Q Consensus 460 sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~s-----------p~g~-------------------------~l~s 503 (604)
+||.|++|++|+...+.++..+. +|.+.|+.++++ |.++ .|++
T Consensus 263 SgS~DrtIkvw~a~dG~~~r~lk-GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVS 341 (480)
T KOG0271|consen 263 SGSQDRTIKVWRALDGKLCRELK-GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVS 341 (480)
T ss_pred ecCCCceEEEEEccchhHHHhhc-ccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEE
Confidence 99999999999998888777664 688888888776 3233 4999
Q ss_pred EEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEE
Q 007411 504 QSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEW 583 (604)
Q Consensus 504 ~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~ 583 (604)
|+.|.++.+|+..... ..+....+| ...|+.+.||||++||++++-|..|++|+.++|+.+.+|++|-+.|..++|
T Consensus 342 gsDd~tlflW~p~~~k--kpi~rmtgH--q~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvaw 417 (480)
T KOG0271|consen 342 GSDDFTLFLWNPFKSK--KPITRMTGH--QALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAW 417 (480)
T ss_pred ecCCceEEEecccccc--cchhhhhch--hhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEe
Confidence 9999999999865432 234566777 567899999999999999999999999999999999999999999999999
Q ss_pred ecCCCCEEEEEeCCCcEEEeC
Q 007411 584 HPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 584 sp~~~~~l~tgg~DG~I~vWD 604 (604)
+. +.++|++|+.|.+|+|||
T Consensus 418 sa-DsRLlVS~SkDsTLKvw~ 437 (480)
T KOG0271|consen 418 SA-DSRLLVSGSKDSTLKVWD 437 (480)
T ss_pred cc-CccEEEEcCCCceEEEEE
Confidence 99 788999999999999997
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.3e-43 Score=343.14 Aligned_cols=317 Identities=23% Similarity=0.427 Sum_probs=276.8
Q ss_pred CccccCcceeeccCccccccceeecCCCccccCCCCcccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEe
Q 007411 263 GEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWD 342 (604)
Q Consensus 263 ~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd 342 (604)
...+.+++....++..|...|.|-.. ...++++.+||...|.||+|+|+ |..||+|+.||+|++||
T Consensus 120 ~~~fsp~g~~l~tGsGD~TvR~WD~~-------------TeTp~~t~KgH~~WVlcvawsPD-gk~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 120 SVQFSPTGSRLVTGSGDTTVRLWDLD-------------TETPLFTCKGHKNWVLCVAWSPD-GKKIASGSKDGSIRLWD 185 (480)
T ss_pred EEEecCCCceEEecCCCceEEeeccC-------------CCCcceeecCCccEEEEEEECCC-cchhhccccCCeEEEec
Confidence 34567777788889999999998543 33678899999999999999999 99999999999999999
Q ss_pred cCCCCeeeEEecCCCCceeeEEEcc-----CCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEE
Q 007411 343 VVNSGKCMRTYMGHSKAVRDISFCN-----DGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILL 417 (604)
Q Consensus 343 ~~~~~~~~~~~~~h~~~V~~l~fsp-----dg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lv 417 (604)
........+.+.+|...|++++|.| ..++|++++.||.|+|||+..+.++..+..+. ..+.++.+-+ ..+++
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT-~~VTCvrwGG--~gliy 262 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHT-ASVTCVRWGG--EGLIY 262 (480)
T ss_pred CCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCc-cceEEEEEcC--CceEE
Confidence 9666677889999999999999976 57799999999999999999999998886543 3333333332 36899
Q ss_pred EEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEe-----------CCC-------------------------CEEEEE
Q 007411 418 AGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFV-----------DSN-------------------------RRFVTS 461 (604)
Q Consensus 418 sg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~s-----------p~~-------------------------~~l~sg 461 (604)
+|+.|++|++|+...|.+...+++|...|+.|+++ |.+ ..+++|
T Consensus 263 SgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSg 342 (480)
T KOG0271|consen 263 SGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSG 342 (480)
T ss_pred ecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEe
Confidence 99999999999999999999999999999999887 222 359999
Q ss_pred eCCCcEEEEECCCCe-EEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEE
Q 007411 462 SDDKSLRVWEFGIPV-VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVN 540 (604)
Q Consensus 462 s~Dg~I~iwdl~~~~-~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~ 540 (604)
|+|.++.+|+-.... ++... .+|..-|..+.|+||++++|+++.|..|++|+.++++.+ ..|.||. ..|..++
T Consensus 343 sDd~tlflW~p~~~kkpi~rm-tgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~l---asfRGHv--~~VYqva 416 (480)
T KOG0271|consen 343 SDDFTLFLWNPFKSKKPITRM-TGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFL---ASFRGHV--AAVYQVA 416 (480)
T ss_pred cCCceEEEecccccccchhhh-hchhhheeeEEECCCccEEEEeecccceeeeeCCCcchh---hhhhhcc--ceeEEEE
Confidence 999999999976554 44343 479999999999999999999999999999999998765 6678885 5688899
Q ss_pred EcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEe
Q 007411 541 FSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 603 (604)
Q Consensus 541 ~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vW 603 (604)
||.|.++|++|+.|.++++|++++.++...+.+|...|.++.|+| ++..+++||.|..+++|
T Consensus 417 wsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwsp-DG~rV~sggkdkv~~lw 478 (480)
T KOG0271|consen 417 WSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSP-DGQRVASGGKDKVLRLW 478 (480)
T ss_pred eccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecC-CCceeecCCCceEEEee
Confidence 999999999999999999999999999999999999999999999 78899999999999999
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3e-40 Score=311.95 Aligned_cols=292 Identities=23% Similarity=0.353 Sum_probs=257.9
Q ss_pred ceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEE
Q 007411 304 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKY 383 (604)
Q Consensus 304 ~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~v 383 (604)
+..++|+||.+.|.++.|+++ .++|+++|.||.+.|||.. +...+..+.-....|..++|+|.|+++++|+.|+...|
T Consensus 46 ~~rr~LkGH~~Ki~~~~ws~D-sr~ivSaSqDGklIvWDs~-TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csi 123 (343)
T KOG0286|consen 46 RTRRTLKGHLNKIYAMDWSTD-SRRIVSASQDGKLIVWDSF-TTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSI 123 (343)
T ss_pred eeEEEecccccceeeeEecCC-cCeEEeeccCCeEEEEEcc-cccceeEEecCceeEEEEEECCCCCeEEecCcCceeEE
Confidence 455899999999999999999 9999999999999999994 55556667778899999999999999999999999999
Q ss_pred EECCCC--c---EEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeC-CCCE
Q 007411 384 WDTETG--Q---VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVD-SNRR 457 (604)
Q Consensus 384 WD~~t~--~---~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp-~~~~ 457 (604)
|++.+. + .+.+.-.+|..+..++.+.++ ..|++++.|.+..+||+++++.++.|.+|.+.|.++.++| +++.
T Consensus 124 y~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD--~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 124 YPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD--NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred EecccccccccceeeeeecCccceeEEEEEcCC--CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCe
Confidence 999855 2 233333455555444444333 5699999999999999999999999999999999999999 8999
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceE
Q 007411 458 FVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYAC 537 (604)
Q Consensus 458 l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~ 537 (604)
|++|+.|++.++||++.+.+.+.+. +|...|.+++|+|+|.-|++|+.|+++++||++....+... ........|+
T Consensus 202 FvSg~cD~~aklWD~R~~~c~qtF~-ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~y---s~~~~~~git 277 (343)
T KOG0286|consen 202 FVSGGCDKSAKLWDVRSGQCVQTFE-GHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVY---SHDSIICGIT 277 (343)
T ss_pred EEecccccceeeeeccCcceeEeec-ccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeee---ccCcccCCce
Confidence 9999999999999999998888775 69999999999999999999999999999999987666433 3333456789
Q ss_pred EEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007411 538 QVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 538 ~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
+++||..|++|++|..|.++.+||.-.++.+..|.+|...|.++..+| ++..|+||++|.+||||.
T Consensus 278 Sv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~-DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 278 SVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSP-DGMAVATGSWDSTLRIWA 343 (343)
T ss_pred eEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECC-CCcEEEecchhHheeecC
Confidence 999999999999999999999999999999999999999999999999 788999999999999995
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.5e-41 Score=330.28 Aligned_cols=287 Identities=24% Similarity=0.399 Sum_probs=262.3
Q ss_pred eEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccC--CCEEEEEECCCcEEE
Q 007411 306 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCND--GTKFLTASYDKNIKY 383 (604)
Q Consensus 306 i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspd--g~~L~s~s~Dg~I~v 383 (604)
...-.|-+.+|..+.|+++ +..|+|||-+|.++||+. .+...+.+|.+|...|.++.|+|. +..++||+.||++++
T Consensus 168 ~~SQ~gd~rPis~~~fS~d-s~~laT~swsG~~kvW~~-~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvkl 245 (459)
T KOG0272|consen 168 VCSQVGDTRPISGCSFSRD-SKHLATGSWSGLVKVWSV-PQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKL 245 (459)
T ss_pred hhhhccCCCcceeeEeecC-CCeEEEeecCCceeEeec-CCcceeEEEeccccceeeEEEccCCCccceeeeccCCceee
Confidence 3344578899999999999 999999999999999999 677999999999999999999995 678999999999999
Q ss_pred EECCCCcEEEEeeCC-CcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEe
Q 007411 384 WDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSS 462 (604)
Q Consensus 384 WD~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs 462 (604)
|++++..++..+..+ ..+.-++|+|++ .+|.+++.|.+-++||++++..+....+|...|.+++|.++|..+++|+
T Consensus 246 w~~~~e~~l~~l~gH~~RVs~VafHPsG---~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGG 322 (459)
T KOG0272|consen 246 WKLSQETPLQDLEGHLARVSRVAFHPSG---KFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGG 322 (459)
T ss_pred eccCCCcchhhhhcchhhheeeeecCCC---ceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccC
Confidence 999998888888654 344567777755 7999999999999999999999988999999999999999999999999
Q ss_pred CCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEc
Q 007411 463 DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 542 (604)
Q Consensus 463 ~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s 542 (604)
.|..-+|||++++.++..+. +|...|.++.|+|+|..|++|+.|++++|||++....+ ..+.+| ...|+.+.|+
T Consensus 323 lD~~~RvWDlRtgr~im~L~-gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~l---y~ipAH--~nlVS~Vk~~ 396 (459)
T KOG0272|consen 323 LDSLGRVWDLRTGRCIMFLA-GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSEL---YTIPAH--SNLVSQVKYS 396 (459)
T ss_pred ccchhheeecccCcEEEEec-ccccceeeEeECCCceEEeecCCCCcEEEeeecccccc---eecccc--cchhhheEec
Confidence 99999999999999999886 49999999999999999999999999999999987664 455566 5678899999
Q ss_pred C-CCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007411 543 P-DGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 543 p-dg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
| .|.+|++++.|++++||...++.+++++.+|.+.|.++.+++ ++..++|++.|.+|++|.
T Consensus 397 p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~-d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 397 PQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISP-DSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEecc-CCceEEEeccCceeeecc
Confidence 9 799999999999999999999999999999999999999999 788999999999999994
No 6
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.6e-37 Score=292.22 Aligned_cols=293 Identities=24% Similarity=0.476 Sum_probs=259.3
Q ss_pred eeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEE
Q 007411 305 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYW 384 (604)
Q Consensus 305 ~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vW 384 (604)
++..+.||.+.|+.+.|+|+ |.+|+||+.|..|.+|+++...+-...+.+|+++|..+.|.+|++.|++|+.|.+|+.|
T Consensus 39 p~m~l~gh~geI~~~~F~P~-gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPD-GSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred hhhhcCCCcceEEEEEECCC-CCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 44567899999999999998 99999999999999999977778888899999999999999999999999999999999
Q ss_pred ECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCC
Q 007411 385 DTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDD 464 (604)
Q Consensus 385 D~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~D 464 (604)
|.++|++++.++.+.. .+-.+.|..-+..++.+|+.|+++++||+|+...++++. ..-.++++.|...+..+++|+-|
T Consensus 118 D~~tG~~~rk~k~h~~-~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggId 195 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHTS-FVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGID 195 (338)
T ss_pred ecccceeeehhccccc-eeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeecccc
Confidence 9999999999876543 333444766677889999999999999999998888774 46789999999999999999999
Q ss_pred CcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecc-cccccCccccc--ceEEEEE
Q 007411 465 KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNK-KKRFAGHIVAG--YACQVNF 541 (604)
Q Consensus 465 g~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~-~~~~~~~~~~~--~v~~l~~ 541 (604)
+.|++||++.......+. +|...|+.+..+|+|.++.+-+.|+++++||++......+ +..+.++.+.- ....++|
T Consensus 196 n~ikvWd~r~~d~~~~ls-Gh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~csw 274 (338)
T KOG0265|consen 196 NDIKVWDLRKNDGLYTLS-GHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSW 274 (338)
T ss_pred CceeeeccccCcceEEee-cccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeec
Confidence 999999999888776664 7999999999999999999999999999999986544443 55666665432 3456899
Q ss_pred cCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEE
Q 007411 542 SPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKY 602 (604)
Q Consensus 542 spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~v 602 (604)
||++.++.+|+.|..+++||..+...+..+.+|.+.|+++.|+| ...+|.+|+.|.+|.+
T Consensus 275 sp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp-~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 275 SPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHP-TEPIILSCSSDKTIYL 334 (338)
T ss_pred cCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecC-CCcEEEEeccCceeEe
Confidence 99999999999999999999999999999999999999999999 7789999999999875
No 7
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.4e-37 Score=304.07 Aligned_cols=278 Identities=24% Similarity=0.396 Sum_probs=246.1
Q ss_pred CCCccccCcceeeccCccccccceeecCCCccccCCCCcccCcceeEEecCCCCCeEEEEEcCC-CCCEEEEEECCCcEE
Q 007411 261 EKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPK-YGHLILSAGMDTKVK 339 (604)
Q Consensus 261 ~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~fsp~-~g~~L~sgs~Dg~I~ 339 (604)
...-.+...+....+...+...+.|..+. ...+++|.||+..|.++.|+|. ++..|+||+.||+|+
T Consensus 178 is~~~fS~ds~~laT~swsG~~kvW~~~~-------------~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvk 244 (459)
T KOG0272|consen 178 ISGCSFSRDSKHLATGSWSGLVKVWSVPQ-------------CNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVK 244 (459)
T ss_pred ceeeEeecCCCeEEEeecCCceeEeecCC-------------cceeEEEeccccceeeEEEccCCCccceeeeccCCcee
Confidence 33345666677777788888888885543 2678999999999999999998 477999999999999
Q ss_pred EEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCC-CcceEEEEccCCCCCcEEEE
Q 007411 340 IWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLA 418 (604)
Q Consensus 340 IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~lvs 418 (604)
+|++ ....++..+.+|...|..++|+|+|++|+|+++|.+-++||++++..+.....+ ..+..+.|.+++ .++++
T Consensus 245 lw~~-~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DG---SL~~t 320 (459)
T KOG0272|consen 245 LWKL-SQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDG---SLAAT 320 (459)
T ss_pred eecc-CCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCC---ceeec
Confidence 9999 566899999999999999999999999999999999999999999877655443 456678888765 68999
Q ss_pred EEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcC-C
Q 007411 419 GMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHP-N 497 (604)
Q Consensus 419 g~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp-~ 497 (604)
|+.|..-+|||++++.++..+.+|..+|.++.|+|+|..|+|||.|++++|||++....+..+. .|..-|+.+.|+| .
T Consensus 321 GGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ip-AH~nlVS~Vk~~p~~ 399 (459)
T KOG0272|consen 321 GGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIP-AHSNLVSQVKYSPQE 399 (459)
T ss_pred cCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecc-cccchhhheEecccC
Confidence 9999999999999999999999999999999999999999999999999999999988876664 6999999999999 6
Q ss_pred CCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEe
Q 007411 498 TNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 561 (604)
Q Consensus 498 g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd 561 (604)
|.+|++++.|++++||...+..++ +.+.|| .+.|.++++++++++|++++.|.++++|.
T Consensus 400 g~fL~TasyD~t~kiWs~~~~~~~---ksLaGH--e~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 400 GYFLVTASYDNTVKIWSTRTWSPL---KSLAGH--EGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred CeEEEEcccCcceeeecCCCcccc---hhhcCC--ccceEEEEeccCCceEEEeccCceeeecc
Confidence 899999999999999998876554 677888 67799999999999999999999999995
No 8
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.1e-36 Score=292.39 Aligned_cols=294 Identities=26% Similarity=0.465 Sum_probs=261.4
Q ss_pred CCCcccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEE
Q 007411 296 NDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTA 375 (604)
Q Consensus 296 ~~~~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~ 375 (604)
.+..-.|.++.+.++||.+.|.|+++.|. ..+|++|+.|++|+|||+ .++++..++.||-..|+.+++|+...+|+++
T Consensus 134 rPeWHapwKl~rVi~gHlgWVr~vavdP~-n~wf~tgs~DrtikIwDl-atg~LkltltGhi~~vr~vavS~rHpYlFs~ 211 (460)
T KOG0285|consen 134 RPEWHAPWKLYRVISGHLGWVRSVAVDPG-NEWFATGSADRTIKIWDL-ATGQLKLTLTGHIETVRGVAVSKRHPYLFSA 211 (460)
T ss_pred CccccCcceehhhhhhccceEEEEeeCCC-ceeEEecCCCceeEEEEc-ccCeEEEeecchhheeeeeeecccCceEEEe
Confidence 34556788999999999999999999998 899999999999999999 7999999999999999999999999999999
Q ss_pred ECCCcEEEEECCCCcEEEEeeCC-CcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCC
Q 007411 376 SYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS 454 (604)
Q Consensus 376 s~Dg~I~vWD~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~ 454 (604)
+.|+.|+.||++..+.++.+..+ ..++++.+.|.. ..|++|+.|..+++||+++...+..+.+|..+|..+.+.|-
T Consensus 212 gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTl---dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~ 288 (460)
T KOG0285|consen 212 GEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTL---DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPT 288 (460)
T ss_pred cCCCeeEEEechhhhhHHHhccccceeEEEeccccc---eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecC
Confidence 99999999999999999888654 445677777755 57999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCccccc
Q 007411 455 NRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAG 534 (604)
Q Consensus 455 ~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 534 (604)
+..+++||.|++|++||++.++....+. .|...+.+++.+|....|++++.|+ |+-|++..+..+.. +.+| ..
T Consensus 289 dpqvit~S~D~tvrlWDl~agkt~~tlt-~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~n---lsgh--~~ 361 (460)
T KOG0285|consen 289 DPQVITGSHDSTVRLWDLRAGKTMITLT-HHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQN---LSGH--NA 361 (460)
T ss_pred CCceEEecCCceEEEeeeccCceeEeee-cccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhc---cccc--cc
Confidence 9999999999999999999999888876 4888999999999999999988775 89999987765533 5566 46
Q ss_pred ceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEec--------CCCcEEEEEEecCCCCEEEEEeCCCcEEEe
Q 007411 535 YACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC--------HEGVCIGCEWHPLEQSKVATCGWDGLIKYW 603 (604)
Q Consensus 535 ~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~--------h~~~V~~v~~sp~~~~~l~tgg~DG~I~vW 603 (604)
.+.+++...|| ++++|+.+|.|.+||+++|..++.++. ....|.+.+|.. .+..|+||..|.+|++|
T Consensus 362 iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDk-tg~rlit~eadKtIk~~ 436 (460)
T KOG0285|consen 362 IINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDK-TGSRLITGEADKTIKMY 436 (460)
T ss_pred eeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecc-cCceEEeccCCcceEEE
Confidence 67788888776 888999999999999999987776632 234688889987 78899999999999999
No 9
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.9e-35 Score=275.89 Aligned_cols=289 Identities=24% Similarity=0.402 Sum_probs=245.3
Q ss_pred ceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCC----CCeeeEEecCCCCceeeEEEccCCCEEEEEECCC
Q 007411 304 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN----SGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDK 379 (604)
Q Consensus 304 ~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~----~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg 379 (604)
.+..+++||++.|+.++..+.+...|+++++|.++.+|++.. .+.+++.+.||+..|..+..+++|++.++++.|+
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~ 85 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG 85 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccc
Confidence 456789999999999999999889999999999999999843 3567899999999999999999999999999999
Q ss_pred cEEEEECCCCcEEEEeeCC-CcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcC-cCCceeEEEEeCC--C
Q 007411 380 NIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ-HLGAVNTITFVDS--N 455 (604)
Q Consensus 380 ~I~vWD~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~-h~~~V~~i~~sp~--~ 455 (604)
.+++||+.+++..+.|..+ ....++++++++ ..+++|+.|.+|.+|++........... +.+.|+|+.|+|+ +
T Consensus 86 ~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn---~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~ 162 (315)
T KOG0279|consen 86 TLRLWDLATGESTRRFVGHTKDVLSVAFSTDN---RQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESN 162 (315)
T ss_pred eEEEEEecCCcEEEEEEecCCceEEEEecCCC---ceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCC
Confidence 9999999999988888654 345677777755 5699999999999999986654443333 3789999999998 7
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccc
Q 007411 456 RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGY 535 (604)
Q Consensus 456 ~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 535 (604)
.+|++++.|++|++||+++.+....+. +|.+.++.++++|||..+++|+.||.+.+||++.+..+..+.. ...
T Consensus 163 p~Ivs~s~DktvKvWnl~~~~l~~~~~-gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a------~~~ 235 (315)
T KOG0279|consen 163 PIIVSASWDKTVKVWNLRNCQLRTTFI-GHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEA------FDI 235 (315)
T ss_pred cEEEEccCCceEEEEccCCcchhhccc-cccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccC------CCe
Confidence 899999999999999999887766654 6999999999999999999999999999999998876533222 366
Q ss_pred eEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEec----C-----CCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007411 536 ACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC----H-----EGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 536 v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~----h-----~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
|.+++|+|+.-.|+.+... .|+|||+.++.++..++. . .-.+.+++|++ ++..|++|-.|+.|++|.
T Consensus 236 v~sl~fspnrywL~~at~~-sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~-dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 236 VNSLCFSPNRYWLCAATAT-SIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSA-DGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred EeeEEecCCceeEeeccCC-ceEEEeccchhhhhhccccccccccccCCcEEEEEEEcC-CCcEEEeeecCCcEEEEE
Confidence 8899999998777666544 599999999988877652 1 23578899999 788999999999999993
No 10
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.7e-36 Score=296.32 Aligned_cols=294 Identities=23% Similarity=0.415 Sum_probs=259.1
Q ss_pred ccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCC--eeeEEecCCCCceeeEEEccCCCEEEEEEC
Q 007411 300 YIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG--KCMRTYMGHSKAVRDISFCNDGTKFLTASY 377 (604)
Q Consensus 300 ~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~--~~~~~~~~h~~~V~~l~fspdg~~L~s~s~ 377 (604)
-+|.+..+++..|+..|.-+.||++ |++|||++.|.+..||.+.... +...++.+|..+|..+.||||.++|++|+.
T Consensus 211 qip~qt~qil~~htdEVWfl~FS~n-GkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~ 289 (519)
T KOG0293|consen 211 QIPSQTWQILQDHTDEVWFLQFSHN-GKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGF 289 (519)
T ss_pred cCCchhhhhHhhCCCcEEEEEEcCC-CeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCc
Confidence 4677888999999999999999999 9999999999999999985444 467889999999999999999999999999
Q ss_pred CCcEEEEECCCCcEEEEeeCC--CcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcC-cCCceeEEEEeCC
Q 007411 378 DKNIKYWDTETGQVIRTFSTG--KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ-HLGAVNTITFVDS 454 (604)
Q Consensus 378 Dg~I~vWD~~t~~~i~~~~~~--~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~-h~~~V~~i~~sp~ 454 (604)
|..+++||+.+|.+...+..+ ..+.+++|.|++ ..+++|+.|+.|..||+.... ....++ ....|.++++.+|
T Consensus 290 ~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg---~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~D 365 (519)
T KOG0293|consen 290 DEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDG---FRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYD 365 (519)
T ss_pred hHheeeccCCcchhhhhcccCcCCCcceeEEccCC---ceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCC
Confidence 999999999999999888776 567788888876 459999999999999997543 333333 2356999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCccccc
Q 007411 455 NRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAG 534 (604)
Q Consensus 455 ~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 534 (604)
|+++++.+.|..|++++.........+. ...+|++++++.+++++++.-.+..|.+||+..... ...+.||....
T Consensus 366 gk~vl~v~~d~~i~l~~~e~~~dr~lis--e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~l---v~kY~Ghkq~~ 440 (519)
T KOG0293|consen 366 GKYVLLVTVDKKIRLYNREARVDRGLIS--EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKL---VRKYFGHKQGH 440 (519)
T ss_pred CcEEEEEecccceeeechhhhhhhcccc--ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhH---HHHhhcccccc
Confidence 9999999999999999998877665553 466899999999999999999999999999985443 35677887778
Q ss_pred ceEEEEEcC-CCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEe
Q 007411 535 YACQVNFSP-DGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 603 (604)
Q Consensus 535 ~v~~l~~sp-dg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vW 603 (604)
++..-+|.- +..++++|+.|+.|+||+..+|+++..+.+|...|++++|+|.+..++|++|.||+||||
T Consensus 441 fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIW 510 (519)
T KOG0293|consen 441 FIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIW 510 (519)
T ss_pred eEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEe
Confidence 888888865 458999999999999999999999999999999999999999999999999999999999
No 11
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.3e-33 Score=282.26 Aligned_cols=287 Identities=30% Similarity=0.569 Sum_probs=251.9
Q ss_pred eEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEE
Q 007411 306 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWD 385 (604)
Q Consensus 306 i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD 385 (604)
++++++|.++|++++|+|+ +.+|++++.||.|++|++ ..+.....+..|...+..+.|++++++|++++.||.|++||
T Consensus 2 ~~~~~~h~~~i~~~~~~~~-~~~l~~~~~~g~i~i~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~ 79 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPD-GKLLATGSGDGTIKVWDL-ETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWD 79 (289)
T ss_pred chHhcccCCCEEEEEEcCC-CCEEEEeecCcEEEEEEe-eCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEE
Confidence 4567899999999999999 899999999999999999 56667788889999999999999999999999999999999
Q ss_pred CCCCcEEEEeeCCC-cceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCC
Q 007411 386 TETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDD 464 (604)
Q Consensus 386 ~~t~~~i~~~~~~~-~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~D 464 (604)
+.+++.+..+..+. .+.++.+.+. ..++++++.++.|.+||+++++....+..|...|.++.|+|++.++++++.+
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 156 (289)
T cd00200 80 LETGECVRTLTGHTSYVSSVAFSPD---GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQD 156 (289)
T ss_pred cCcccceEEEeccCCcEEEEEEcCC---CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCC
Confidence 99988777776544 4566666664 3577777779999999999999999998999999999999998888888889
Q ss_pred CcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCC
Q 007411 465 KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPD 544 (604)
Q Consensus 465 g~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spd 544 (604)
+.|++||++....+..+. .+...+.++.|+|+++.|++++.++.|++||+........ +..+ ...+.++.|+|+
T Consensus 157 ~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~---~~~~--~~~i~~~~~~~~ 230 (289)
T cd00200 157 GTIKLWDLRTGKCVATLT-GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGT---LRGH--ENGVNSVAFSPD 230 (289)
T ss_pred CcEEEEEccccccceeEe-cCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecc---hhhc--CCceEEEEEcCC
Confidence 999999999877776665 5777899999999999999999999999999987554433 3233 347888999999
Q ss_pred CCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007411 545 GRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 545 g~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
+.++++++.+|.|++|++.+++.+..+..|...|.+++|+| ++.+|++++.||.|++||
T Consensus 231 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 231 GYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSP-DGKRLASGSADGTIRIWD 289 (289)
T ss_pred CcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECC-CCCEEEEecCCCeEEecC
Confidence 99999998899999999999999999999999999999999 678999999999999997
No 12
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.9e-34 Score=267.04 Aligned_cols=270 Identities=20% Similarity=0.402 Sum_probs=239.0
Q ss_pred CCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCc--EEEEeeCC-Ccce
Q 007411 326 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ--VIRTFSTG-KIPY 402 (604)
Q Consensus 326 g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~--~i~~~~~~-~~~~ 402 (604)
.-+|+|+|.|.+|++|.. .+|.|.++++...+.|+.+...|+++.|++++. ..|++||+++++ ++.+|..+ +.+.
T Consensus 10 ~viLvsA~YDhTIRfWqa-~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVt 87 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQA-LTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVT 87 (311)
T ss_pred ceEEEeccCcceeeeeeh-hcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceE
Confidence 458999999999999999 799999999988899999999999999998886 689999999876 47777665 5667
Q ss_pred EEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEee
Q 007411 403 VVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYIS 482 (604)
Q Consensus 403 ~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~ 482 (604)
.+.|..++ ..+++|+.||.++|||++...+.+.++ |..+|+++..+|+...|++|..+|.|++||+....+...+.
T Consensus 88 aVgF~~dg---rWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~li 163 (311)
T KOG0315|consen 88 AVGFQCDG---RWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELI 163 (311)
T ss_pred EEEEeecC---eEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccC
Confidence 77777654 799999999999999999977666664 77999999999999999999999999999999988877777
Q ss_pred cCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCce---eecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEE
Q 007411 483 EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF---QLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWF 559 (604)
Q Consensus 483 ~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~---~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~i 559 (604)
.....+|.++.+.|+|.+|+.+...|..++|++.+.. .+..+..++.| .+++..+.+|||+++|+++++|.+++|
T Consensus 164 Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah--~~~il~C~lSPd~k~lat~ssdktv~i 241 (311)
T KOG0315|consen 164 PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAH--NGHILRCLLSPDVKYLATCSSDKTVKI 241 (311)
T ss_pred CCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecc--cceEEEEEECCCCcEEEeecCCceEEE
Confidence 6677889999999999999999999999999986643 33344456666 688999999999999999999999999
Q ss_pred EeCCCC-eeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007411 560 WDWKSC-KVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 560 wd~~t~-~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
|+..+. +....+.+|..-+..++|+. ++.+|+|++.|+.+++||
T Consensus 242 wn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~rlW~ 286 (311)
T KOG0315|consen 242 WNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTARLWD 286 (311)
T ss_pred EecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCceeecc
Confidence 999887 77788899999999999999 888999999999999997
No 13
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.8e-35 Score=287.06 Aligned_cols=290 Identities=27% Similarity=0.451 Sum_probs=261.3
Q ss_pred cceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEE
Q 007411 303 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIK 382 (604)
Q Consensus 303 ~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~ 382 (604)
+.+.+.+.||..+|+.+-|+|. -.++++++.|++|++||. .++++.+.++||...|.+|+|+..|++|++|+.|=.++
T Consensus 98 p~l~~~l~g~r~~vt~v~~hp~-~~~v~~as~d~tikv~D~-~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~ 175 (406)
T KOG0295|consen 98 PNLVQKLAGHRSSVTRVIFHPS-EALVVSASEDATIKVFDT-ETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAK 175 (406)
T ss_pred CCchhhhhccccceeeeeeccC-ceEEEEecCCceEEEEEc-cchhhhhhhhccccceeEEEEecCccEEEecCCccchh
Confidence 3567788899999999999999 889999999999999999 78999999999999999999999999999999999999
Q ss_pred EEECCC-CcEEEEeeC-CCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEE
Q 007411 383 YWDTET-GQVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVT 460 (604)
Q Consensus 383 vWD~~t-~~~i~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~s 460 (604)
+||..+ .++++.... .+...++++.|.+ .++++++.|.+|+.|++.++.++.++.+|...|..+..+.||.++++
T Consensus 176 LWd~~~~~~c~ks~~gh~h~vS~V~f~P~g---d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As 252 (406)
T KOG0295|consen 176 LWDFDTFFRCIKSLIGHEHGVSSVFFLPLG---DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIAS 252 (406)
T ss_pred heeHHHHHHHHHHhcCcccceeeEEEEecC---CeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEe
Confidence 999987 445554433 4566778888865 68999999999999999999999999999999999999999999999
Q ss_pred EeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCC---------------CCEEEEEEcCCeEEEEEcCCceeecccc
Q 007411 461 SSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPN---------------TNWLAAQSLDNQILIYSTRERFQLNKKK 525 (604)
Q Consensus 461 gs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~---------------g~~l~s~s~Dg~I~iwd~~~~~~~~~~~ 525 (604)
++.|.+|++|-+.+..+...+. .|..+|-+++|.|. +.++.+++.|++|++||+.++.++ .
T Consensus 253 ~s~dqtl~vW~~~t~~~k~~lR-~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL---~ 328 (406)
T KOG0295|consen 253 CSNDQTLRVWVVATKQCKAELR-EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCL---F 328 (406)
T ss_pred cCCCceEEEEEeccchhhhhhh-ccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEE---E
Confidence 9999999999998886655554 58899999999872 358999999999999999998666 4
Q ss_pred cccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007411 526 RFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 526 ~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
.+.+| ..+|+.++|+|.|+||+++..|++|++||++++++..++.+|..-|+++.|+. +..+++||+-|.++++|.
T Consensus 329 tL~gh--dnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~-~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 329 TLVGH--DNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHK-TAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred EEecc--cceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCC-CCceEEeccccceeeeee
Confidence 56677 67899999999999999999999999999999999999999999999999998 677999999999999994
No 14
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2e-34 Score=287.84 Aligned_cols=277 Identities=22% Similarity=0.438 Sum_probs=250.3
Q ss_pred CCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEE
Q 007411 313 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVI 392 (604)
Q Consensus 313 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i 392 (604)
+..|++|+|+.+ |.+||+|+.||.++||+. .+..+.++..|.++|.+|.|+..|++|++++.|+++.+||..+|.+.
T Consensus 235 nkdVT~L~Wn~~-G~~LatG~~~G~~riw~~--~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~ 311 (524)
T KOG0273|consen 235 NKDVTSLDWNND-GTLLATGSEDGEARIWNK--DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVK 311 (524)
T ss_pred cCCcceEEecCC-CCeEEEeecCcEEEEEec--CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEE
Confidence 467999999999 999999999999999997 78899999999999999999999999999999999999999999999
Q ss_pred EEeeCCCcc-eEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEE
Q 007411 393 RTFSTGKIP-YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWE 471 (604)
Q Consensus 393 ~~~~~~~~~-~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwd 471 (604)
+.+..+..+ .-+.|..+. .|++.+.|+.|+++-+....++.++.+|.++|+++.|+|.+.+|+++|+|++++||.
T Consensus 312 q~f~~~s~~~lDVdW~~~~----~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs 387 (524)
T KOG0273|consen 312 QQFEFHSAPALDVDWQSND----EFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWS 387 (524)
T ss_pred EeeeeccCCccceEEecCc----eEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeee
Confidence 999888777 446666543 499999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEeecCCCCcccEEEEcCCC---------CEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEc
Q 007411 472 FGIPVVIKYISEPHMHSMPSISLHPNT---------NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 542 (604)
Q Consensus 472 l~~~~~~~~~~~~~~~~v~~l~~sp~g---------~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s 542 (604)
.........+. .|...|..+.|+|.| ..+++++.|++|++||+..+.++.. |..| ..+|.+++||
T Consensus 388 ~~~~~~~~~l~-~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~---f~kH--~~pVysvafS 461 (524)
T KOG0273|consen 388 MGQSNSVHDLQ-AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHT---LMKH--QEPVYSVAFS 461 (524)
T ss_pred cCCCcchhhhh-hhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEe---eccC--CCceEEEEec
Confidence 98888777765 588889999999954 4799999999999999998876643 5455 5778899999
Q ss_pred CCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007411 543 PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 543 pdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
|+|+||++|+.||.|.+|+++++++++.+.+. +.|..++|+- .+.+|..+-.||.+++-|
T Consensus 462 ~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~-~~Ifel~Wn~-~G~kl~~~~sd~~vcvld 521 (524)
T KOG0273|consen 462 PNGRYLASGSLDGCVHIWSTKTGKLVKSYQGT-GGIFELCWNA-AGDKLGACASDGSVCVLD 521 (524)
T ss_pred CCCcEEEecCCCCeeEeccccchheeEeecCC-CeEEEEEEcC-CCCEEEEEecCCCceEEE
Confidence 99999999999999999999999999999854 4599999999 668999999999998865
No 15
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.9e-34 Score=262.89 Aligned_cols=288 Identities=25% Similarity=0.433 Sum_probs=253.5
Q ss_pred cCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCc
Q 007411 301 IPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKN 380 (604)
Q Consensus 301 ~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~ 380 (604)
.|.+-++.+..|.++|.+++|+-+ |++.++|+.|.+|++|+. ..+.+++++.+|...|.+++.+.|+..|++|+.|+.
T Consensus 5 ~ptkr~~~l~~~qgaV~avryN~d-GnY~ltcGsdrtvrLWNp-~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~ 82 (307)
T KOG0316|consen 5 LPTKRLSILDCAQGAVRAVRYNVD-GNYCLTCGSDRTVRLWNP-LRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKA 82 (307)
T ss_pred CcchhceeecccccceEEEEEccC-CCEEEEcCCCceEEeecc-cccceeeeecCCCceeeeccccccccccccCCCCce
Confidence 466778899999999999999999 999999999999999999 789999999999999999999999999999999999
Q ss_pred EEEEECCCCcEEEEeeCCC-cceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCC--ceEEEEcCcCCceeEEEEeCCCCE
Q 007411 381 IKYWDTETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK--EITQEYDQHLGAVNTITFVDSNRR 457 (604)
Q Consensus 381 I~vWD~~t~~~i~~~~~~~-~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~--~~~~~~~~h~~~V~~i~~sp~~~~ 457 (604)
|.+||+++|+.++.+..+. .+..+.|+... .++++|+.|.++++||.++. ++++.+......|.+|.+. +..
T Consensus 83 v~vwDV~TGkv~Rr~rgH~aqVNtV~fNees---SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~he 157 (307)
T KOG0316|consen 83 VQVWDVNTGKVDRRFRGHLAQVNTVRFNEES---SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHE 157 (307)
T ss_pred EEEEEcccCeeeeecccccceeeEEEecCcc---eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccE
Confidence 9999999999999997653 34456665433 78999999999999999875 7889998889999999985 568
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceE
Q 007411 458 FVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYAC 537 (604)
Q Consensus 458 l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~ 537 (604)
|++||.||+++.||++.+...... ..++|++++|+++++.+++++.|++|++.|-.+++.+ ..+.||.+..+-.
T Consensus 158 IvaGS~DGtvRtydiR~G~l~sDy---~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL---~sYkGhkn~eykl 231 (307)
T KOG0316|consen 158 IVAGSVDGTVRTYDIRKGTLSSDY---FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLL---KSYKGHKNMEYKL 231 (307)
T ss_pred EEeeccCCcEEEEEeecceeehhh---cCCcceeEEecCCCCEEEEeeccceeeecccchhHHH---HHhcccccceeee
Confidence 999999999999999998876543 5679999999999999999999999999998887655 6678888888888
Q ss_pred EEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCc-EEEEEEecCCCCEEEEEeCCCcEEEe
Q 007411 538 QVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGV-CIGCEWHPLEQSKVATCGWDGLIKYW 603 (604)
Q Consensus 538 ~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~-V~~v~~sp~~~~~l~tgg~DG~I~vW 603 (604)
.++++.....+++|+.||.|++||+.....+..+..|... |.++.++|. ...|++++ ++.+.+|
T Consensus 232 dc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~-~~~f~~A~-~~~~~~~ 296 (307)
T KOG0316|consen 232 DCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPT-MDDFITAT-GHGDLFW 296 (307)
T ss_pred eeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccC-ccceeEec-CCceece
Confidence 8999999999999999999999999999999999998887 899999994 44555555 3344444
No 16
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.3e-33 Score=285.20 Aligned_cols=295 Identities=23% Similarity=0.351 Sum_probs=249.7
Q ss_pred cCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEec---CCCCceeeEEEccCCCEEEEEEC
Q 007411 301 IPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYM---GHSKAVRDISFCNDGTKFLTASY 377 (604)
Q Consensus 301 ~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~---~h~~~V~~l~fspdg~~L~s~s~ 377 (604)
.|.+.-.+++.|+.-|.|++|+|+ |.++++.+.||+|.|||- .+++.+..+. +|.+.|.+|+|+||+..|++++.
T Consensus 178 PPFKFk~s~r~HskFV~~VRysPD-G~~Fat~gsDgki~iyDG-ktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa 255 (603)
T KOG0318|consen 178 PPFKFKSSFREHSKFVNCVRYSPD-GSRFATAGSDGKIYIYDG-KTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA 255 (603)
T ss_pred CCeeeeecccccccceeeEEECCC-CCeEEEecCCccEEEEcC-CCccEEEEecCCCCccccEEEEEECCCCceEEEecC
Confidence 477889999999999999999999 999999999999999998 6888888887 89999999999999999999999
Q ss_pred CCcEEEEECCCCcEEEEeeCCCcc--eEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCC
Q 007411 378 DKNIKYWDTETGQVIRTFSTGKIP--YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSN 455 (604)
Q Consensus 378 Dg~I~vWD~~t~~~i~~~~~~~~~--~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~ 455 (604)
|.+++|||+.+.++++++..+... ..+.+.+.. ..|++.+.+|.|.+++.........+.+|...|++++.++++
T Consensus 256 Dkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqk---d~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~ 332 (603)
T KOG0318|consen 256 DKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQK---DHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDG 332 (603)
T ss_pred CceEEEEEeeccceEEEeecCCchhceEEEEEEeC---CeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCC
Confidence 999999999999999999877662 233333322 459999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCeEE-----------E--------------------Ee-----------------------
Q 007411 456 RRFVTSSDDKSLRVWEFGIPVVI-----------K--------------------YI----------------------- 481 (604)
Q Consensus 456 ~~l~sgs~Dg~I~iwdl~~~~~~-----------~--------------------~~----------------------- 481 (604)
.+|++|+.||.|.-|+..++..- . .+
T Consensus 333 ~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~la 412 (603)
T KOG0318|consen 333 KTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLA 412 (603)
T ss_pred CEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEE
Confidence 99999999999999997543211 0 00
Q ss_pred --------------------------ecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccc
Q 007411 482 --------------------------SEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGY 535 (604)
Q Consensus 482 --------------------------~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 535 (604)
..+......+++++|++..+++|+.|+.|+||.+........ .....| .+.
T Consensus 413 v~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee-~~~~~h--~a~ 489 (603)
T KOG0318|consen 413 VLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEE-AKLLEH--RAA 489 (603)
T ss_pred EcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccce-eeeecc--cCC
Confidence 000112356789999999999999999999999987543322 222333 578
Q ss_pred eEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEE-EEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007411 536 ACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFR-TLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 536 v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~-~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
++++++|||+.||++|+..+.+.+||+.+.+... .+--|...|.+++|+| +..+||||+.|-+|.||+
T Consensus 490 iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP-~n~~vATGSlDt~Viiys 558 (603)
T KOG0318|consen 490 ITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSP-NNKLVATGSLDTNVIIYS 558 (603)
T ss_pred ceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCC-CceEEEeccccceEEEEE
Confidence 9999999999999999999999999999887733 3345999999999999 777999999999999995
No 17
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.1e-32 Score=267.84 Aligned_cols=287 Identities=22% Similarity=0.351 Sum_probs=244.0
Q ss_pred eeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEE
Q 007411 305 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYW 384 (604)
Q Consensus 305 ~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vW 384 (604)
-+++|..|+..|.+++.+|+ .++++||+.|..-.||++ .++.....+.+|...|+++.|+.+|.+|+||+.+|.|+||
T Consensus 56 S~~tF~~H~~svFavsl~P~-~~l~aTGGgDD~AflW~~-~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPN-NNLVATGGGDDLAFLWDI-STGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVF 133 (399)
T ss_pred ceeehhhcCCceEEEEeCCC-CceEEecCCCceEEEEEc-cCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEE
Confidence 35789999999999999996 999999999999999999 6888999999999999999999999999999999999999
Q ss_pred ECCCCcEEEEee-CCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeC
Q 007411 385 DTETGQVIRTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD 463 (604)
Q Consensus 385 D~~t~~~i~~~~-~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~ 463 (604)
...++.....+. ......-+.|+| ..++|++|+.||.|.+|.+.++...+.+.+|..++++-.|.|+|++++++..
T Consensus 134 ~~stg~~~~~~~~e~~dieWl~WHp---~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~ 210 (399)
T KOG0296|consen 134 KVSTGGEQWKLDQEVEDIEWLKWHP---RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYD 210 (399)
T ss_pred EcccCceEEEeecccCceEEEEecc---cccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEec
Confidence 999999888875 334445566666 4489999999999999999998899999999999999999999999999999
Q ss_pred CCcEEEEECCCCeEEEEeecCCCCcccEEEEcC-----------------------------------------------
Q 007411 464 DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHP----------------------------------------------- 496 (604)
Q Consensus 464 Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp----------------------------------------------- 496 (604)
||+|++|++.++.++..+........+++.++.
T Consensus 211 dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve 290 (399)
T KOG0296|consen 211 DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVE 290 (399)
T ss_pred CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhh
Confidence 999999999999888777522111111111111
Q ss_pred ------CCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEE
Q 007411 497 ------NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRT 570 (604)
Q Consensus 497 ------~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~ 570 (604)
.-.+.|+|+.||+|.|||+...... ..-.| ...|+.+.|-+ ..+|++++.+|.|+.||.++|+++.+
T Consensus 291 ~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R----~~c~h--e~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~ 363 (399)
T KOG0296|consen 291 SIPSSSKLPLAACGSVDGTIAIYDLAASTLR----HICEH--EDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFT 363 (399)
T ss_pred hcccccccchhhcccccceEEEEecccchhh----eeccC--CCceEEEEEcC-cchheeeccCceEEeeeccccceEEE
Confidence 1134677888999999998653221 12222 45588999998 78999999999999999999999999
Q ss_pred EecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007411 571 LKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 571 l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
+.+|...|.+++++| +.++++|+|.|++.+||+
T Consensus 364 y~GH~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 364 YTGHQMGILDFALSP-QKRLVVTVSDDNTALVFE 396 (399)
T ss_pred EecCchheeEEEEcC-CCcEEEEecCCCeEEEEe
Confidence 999999999999999 788999999999999985
No 18
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=9e-33 Score=255.88 Aligned_cols=293 Identities=20% Similarity=0.354 Sum_probs=253.6
Q ss_pred cceeeccCccccccceeecCCCccccCCCCcccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCC-
Q 007411 269 KSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG- 347 (604)
Q Consensus 269 ~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~- 347 (604)
...++.+.++|..+|.|... ..++.++++-....|+.+...|+ ++.||+++. ..|++||+....
T Consensus 9 ~~viLvsA~YDhTIRfWqa~-------------tG~C~rTiqh~dsqVNrLeiTpd-k~~LAaa~~-qhvRlyD~~S~np 73 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQAL-------------TGICSRTIQHPDSQVNRLEITPD-KKDLAAAGN-QHVRLYDLNSNNP 73 (311)
T ss_pred CceEEEeccCcceeeeeehh-------------cCeEEEEEecCccceeeEEEcCC-cchhhhccC-CeeEEEEccCCCC
Confidence 56788999999999999663 44788999988899999999999 888888775 689999995443
Q ss_pred eeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEE
Q 007411 348 KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQ 427 (604)
Q Consensus 348 ~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~i 427 (604)
.++.+|.+|.+.|+++.|..+|+.+++||.||+++|||++...+.+.+....++.++.++|+. ..|++|..+|.|++
T Consensus 74 ~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQ---teLis~dqsg~irv 150 (311)
T KOG0315|consen 74 NPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQ---TELISGDQSGNIRV 150 (311)
T ss_pred CceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCc---ceEEeecCCCcEEE
Confidence 389999999999999999999999999999999999999998888888888888889888854 57999999999999
Q ss_pred EeCCCCceEEEE-cCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCe------EEEEeecCCCCcccEEEEcCCCCE
Q 007411 428 WDMNTKEITQEY-DQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPV------VIKYISEPHMHSMPSISLHPNTNW 500 (604)
Q Consensus 428 wD~~s~~~~~~~-~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~------~~~~~~~~~~~~v~~l~~sp~g~~ 500 (604)
||+....+...+ ......|.++.+.|+|.+++.+...|..++|++-... ++..+ ..|...+..+.++|++++
T Consensus 151 WDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~-~ah~~~il~C~lSPd~k~ 229 (311)
T KOG0315|consen 151 WDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKF-QAHNGHILRCLLSPDVKY 229 (311)
T ss_pred EEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhhe-ecccceEEEEEECCCCcE
Confidence 999988665554 3345689999999999999999999999999986532 22222 358888999999999999
Q ss_pred EEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEE
Q 007411 501 LAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIG 580 (604)
Q Consensus 501 l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~ 580 (604)
|++++.|.+++||+..+. +.....+.+| ..++..++||.||.||++|+.|+.+++|++..++.++.+.+|.....+
T Consensus 230 lat~ssdktv~iwn~~~~--~kle~~l~gh--~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc 305 (311)
T KOG0315|consen 230 LATCSSDKTVKIWNTDDF--FKLELVLTGH--QRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVC 305 (311)
T ss_pred EEeecCCceEEEEecCCc--eeeEEEeecC--CceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEE
Confidence 999999999999999876 3334556677 578999999999999999999999999999999999999999988777
Q ss_pred EEEe
Q 007411 581 CEWH 584 (604)
Q Consensus 581 v~~s 584 (604)
++..
T Consensus 306 ~~ln 309 (311)
T KOG0315|consen 306 VALN 309 (311)
T ss_pred EEee
Confidence 7764
No 19
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.9e-33 Score=262.46 Aligned_cols=256 Identities=22% Similarity=0.409 Sum_probs=220.3
Q ss_pred CcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcE
Q 007411 302 PKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNI 381 (604)
Q Consensus 302 p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I 381 (604)
-..+++.|.||+..|..+..+++ +++.++++.|+++++||+ ..++..+.|.+|...|.+++|++|.+.+++|+.|++|
T Consensus 52 ~G~~~r~~~GHsH~v~dv~~s~d-g~~alS~swD~~lrlWDl-~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTi 129 (315)
T KOG0279|consen 52 YGVPVRRLTGHSHFVSDVVLSSD-GNFALSASWDGTLRLWDL-ATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTI 129 (315)
T ss_pred cCceeeeeeccceEecceEEccC-CceEEeccccceEEEEEe-cCCcEEEEEEecCCceEEEEecCCCceeecCCCccee
Confidence 34678999999999999999999 999999999999999999 6789999999999999999999999999999999999
Q ss_pred EEEECCCCcEEEEeeC--CCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEE
Q 007411 382 KYWDTETGQVIRTFST--GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFV 459 (604)
Q Consensus 382 ~vWD~~t~~~i~~~~~--~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~ 459 (604)
++|++..+........ ..-+.|++|+|... ..+|++++.|+.|++||+++.++...+.+|.+.++.++++|||..++
T Consensus 130 klwnt~g~ck~t~~~~~~~~WVscvrfsP~~~-~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslca 208 (315)
T KOG0279|consen 130 KLWNTLGVCKYTIHEDSHREWVSCVRFSPNES-NPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCA 208 (315)
T ss_pred eeeeecccEEEEEecCCCcCcEEEEEEcCCCC-CcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEe
Confidence 9999986555444443 34566788888753 47899999999999999999999999999999999999999999999
Q ss_pred EEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeccccc-ccCc---ccccc
Q 007411 460 TSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKR-FAGH---IVAGY 535 (604)
Q Consensus 460 sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~-~~~~---~~~~~ 535 (604)
+|+.||.+.+||++.++.+..+ .+...|.+++|+|+..+|+.+. +..|+|||+.++..+..+.. +.+. .....
T Consensus 209 sGgkdg~~~LwdL~~~k~lysl--~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~ 285 (315)
T KOG0279|consen 209 SGGKDGEAMLWDLNEGKNLYSL--EAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPI 285 (315)
T ss_pred cCCCCceEEEEEccCCceeEec--cCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcE
Confidence 9999999999999999987766 5888999999999987776655 55699999988765543331 1111 11345
Q ss_pred eEEEEEcCCCCEEEEEcCCCcEEEEeCC
Q 007411 536 ACQVNFSPDGRFVMSGDGEGKCWFWDWK 563 (604)
Q Consensus 536 v~~l~~spdg~~L~sgs~dG~I~iwd~~ 563 (604)
..+++||+||+.|++|..|+.|++|.+.
T Consensus 286 clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 286 CLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 6789999999999999999999999864
No 20
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.4e-34 Score=284.24 Aligned_cols=292 Identities=19% Similarity=0.382 Sum_probs=249.7
Q ss_pred cCcceeEEe-cCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCC
Q 007411 301 IPKRLVHTW-SGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDK 379 (604)
Q Consensus 301 ~p~~~i~tl-~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg 379 (604)
++.+.+++- ..-..+|..|+|.|+ |+.|++|+..|.+.+|+. ..-..-..++.|..+|+++.|+++|.+++||+.+|
T Consensus 83 ~~tKf~h~s~NKvkc~V~~v~WtPe-GRRLltgs~SGEFtLWNg-~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG 160 (464)
T KOG0284|consen 83 FTTKFVHTSSNKVKCPVNVVRWTPE-GRRLLTGSQSGEFTLWNG-TSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGG 160 (464)
T ss_pred cccceEeccccccccceeeEEEcCC-CceeEeecccccEEEecC-ceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCc
Confidence 344455443 445678999999999 999999999999999997 33333445678999999999999999999999999
Q ss_pred cEEEEECCCCcEEEEeeCC-CcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEE
Q 007411 380 NIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRF 458 (604)
Q Consensus 380 ~I~vWD~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l 458 (604)
.|++|+..-.........+ ..+.+++|+|.+ ..|++++.||.|+|||....+....+.+|.-.|.|+.|+|....|
T Consensus 161 ~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnD---skF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLi 237 (464)
T KOG0284|consen 161 MIKYWQPNMNNVKIIQAHHAEAIRDLAFSPND---SKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLI 237 (464)
T ss_pred eEEecccchhhhHHhhHhhhhhhheeccCCCC---ceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCcccee
Confidence 9999998754433322222 456788888854 569999999999999999998888899999999999999999999
Q ss_pred EEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEE
Q 007411 459 VTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQ 538 (604)
Q Consensus 459 ~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 538 (604)
+++|.|..|++||.+++.++..+. .|...|..+.|.|++++|+++|.|..+++||+++. ..+..+++| ...+++
T Consensus 238 asgskDnlVKlWDprSg~cl~tlh-~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m---kEl~~~r~H--kkdv~~ 311 (464)
T KOG0284|consen 238 ASGSKDNLVKLWDPRSGSCLATLH-GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM---KELFTYRGH--KKDVTS 311 (464)
T ss_pred EEccCCceeEeecCCCcchhhhhh-hccceEEEEEEcCCCCeeEEccCCceEEEEehhHh---HHHHHhhcc--hhhhee
Confidence 999999999999999999998886 59999999999999999999999999999999854 344667777 466889
Q ss_pred EEEcC-CCCEEEEEcCCCcEEEEeCCCCeeEEEEe-cCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007411 539 VNFSP-DGRFVMSGDGEGKCWFWDWKSCKVFRTLK-CHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 539 l~~sp-dg~~L~sgs~dG~I~iwd~~t~~~~~~l~-~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
+.|+| ...+|.+|+.||.|..|.+...+++..+. +|.+.|++++|+| =+.+|++|+.|.++++|.
T Consensus 312 ~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hP-lGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 312 LTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHP-LGHILATGSNDRTVRFWT 378 (464)
T ss_pred eccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccc-cceeEeecCCCcceeeec
Confidence 99999 46688899999999999998767666664 8999999999999 688999999999999993
No 21
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.2e-32 Score=297.27 Aligned_cols=291 Identities=27% Similarity=0.552 Sum_probs=249.5
Q ss_pred eeEEecCC-CCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCe--eeEEecCCCCceeeEEEccCCCEEEEEECCCcE
Q 007411 305 LVHTWSGH-TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGK--CMRTYMGHSKAVRDISFCNDGTKFLTASYDKNI 381 (604)
Q Consensus 305 ~i~tl~gH-~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~--~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I 381 (604)
+..++.+| ...|+|+.|+++ |.+|++++.|+.+++|+. .... ..+.+.+|...|++++|+|++.++++++.|++|
T Consensus 150 ~~~~~~~~~~~sv~~~~fs~~-g~~l~~~~~~~~i~~~~~-~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~ti 227 (456)
T KOG0266|consen 150 LEQTLAGHECPSVTCVDFSPD-GRALAAASSDGLIRIWKL-EGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTL 227 (456)
T ss_pred eeeeecccccCceEEEEEcCC-CCeEEEccCCCcEEEeec-ccccchhhccccccccceeeeEECCCCcEEEEecCCceE
Confidence 36666665 899999999999 888999999999999999 4555 777788999999999999999999999999999
Q ss_pred EEEEC-CCCcEEEEeeCCC-cceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEE
Q 007411 382 KYWDT-ETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFV 459 (604)
Q Consensus 382 ~vWD~-~t~~~i~~~~~~~-~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~ 459 (604)
+|||+ ..+.+++++..+. .+.+++|++ .. +++++|+.|+.|++||+++++++..+.+|.+.|++++|++++++|+
T Consensus 228 riwd~~~~~~~~~~l~gH~~~v~~~~f~p--~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~ 304 (456)
T KOG0266|consen 228 RIWDLKDDGRNLKTLKGHSTYVTSVAFSP--DG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLV 304 (456)
T ss_pred EEeeccCCCeEEEEecCCCCceEEEEecC--CC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEE
Confidence 99999 5558888887332 234555555 44 7999999999999999999999999999999999999999999999
Q ss_pred EEeCCCcEEEEECCCCe--EEEEeecCCCC-cccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccc-cc
Q 007411 460 TSSDDKSLRVWEFGIPV--VIKYISEPHMH-SMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVA-GY 535 (604)
Q Consensus 460 sgs~Dg~I~iwdl~~~~--~~~~~~~~~~~-~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~-~~ 535 (604)
+++.|+.|+|||+.++. +...+...... ++.++.|+|++.+|++++.|+.+++|++...... ..+.+|... ..
T Consensus 305 s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~---~~~~~~~~~~~~ 381 (456)
T KOG0266|consen 305 SASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSV---GTYTGHSNLVRC 381 (456)
T ss_pred EcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcce---eeecccCCccee
Confidence 99999999999999998 44555443333 6999999999999999999999999999876555 334445433 23
Q ss_pred eEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecC-CCcEEEEEEecCCCCEEEEEe--CCCcEEEeC
Q 007411 536 ACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCH-EGVCIGCEWHPLEQSKVATCG--WDGLIKYWD 604 (604)
Q Consensus 536 v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h-~~~V~~v~~sp~~~~~l~tgg--~DG~I~vWD 604 (604)
+.+..+++.+.++++|+.|+.|++||+.++..+..+.+| ...+..+.|+| ...++++++ .|+.|++|.
T Consensus 382 ~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~-~~~~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 382 IFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHP-TENLIASSSFEGDGLIRLWK 452 (456)
T ss_pred EecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCC-CcCeeeecCcCCCceEEEec
Confidence 444556889999999999999999999999999999999 88999999999 788999998 689999993
No 22
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.4e-32 Score=283.34 Aligned_cols=271 Identities=22% Similarity=0.428 Sum_probs=229.1
Q ss_pred CCCcccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEE
Q 007411 296 NDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTA 375 (604)
Q Consensus 296 ~~~~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~ 375 (604)
..|......-+...+||...|+|++++|+ |+++++|+.||+|+|||. ..+-|+.+|..|+..|+.+.|+..|+.++++
T Consensus 333 lVweWqsEsYVlKQQgH~~~i~~l~YSpD-gq~iaTG~eDgKVKvWn~-~SgfC~vTFteHts~Vt~v~f~~~g~~llss 410 (893)
T KOG0291|consen 333 LVWEWQSESYVLKQQGHSDRITSLAYSPD-GQLIATGAEDGKVKVWNT-QSGFCFVTFTEHTSGVTAVQFTARGNVLLSS 410 (893)
T ss_pred EEEEeeccceeeeccccccceeeEEECCC-CcEEEeccCCCcEEEEec-cCceEEEEeccCCCceEEEEEEecCCEEEEe
Confidence 34566666777888999999999999999 999999999999999999 7899999999999999999999999999999
Q ss_pred ECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCC-eEEEEeCCCCceEEEEcCcCCceeEEEEeCC
Q 007411 376 SYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK-KIVQWDMNTKEITQEYDQHLGAVNTITFVDS 454 (604)
Q Consensus 376 s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg-~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~ 454 (604)
|.||+|+.||+...+..++|..+.+....++..++. +.++++|+.|. .|.+|++.+|+++..+.+|.++|.+++|+|.
T Consensus 411 SLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~s-GelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~ 489 (893)
T KOG0291|consen 411 SLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPS-GELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPD 489 (893)
T ss_pred ecCCeEEeeeecccceeeeecCCCceeeeEEEEcCC-CCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccc
Confidence 999999999999999999999888776555555433 35777777764 6999999999999999999999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCC-eEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeccccc----ccC
Q 007411 455 NRRFVTSSDDKSLRVWEFGIP-VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKR----FAG 529 (604)
Q Consensus 455 ~~~l~sgs~Dg~I~iwdl~~~-~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~----~~~ 529 (604)
+..|+++|.|.+|++||+-.. .....+ ...+.+..++|+|+|+.|++++.||.|.+||+........+.. ..+
T Consensus 490 ~~~LaS~SWDkTVRiW~if~s~~~vEtl--~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~g 567 (893)
T KOG0291|consen 490 GSLLASGSWDKTVRIWDIFSSSGTVETL--EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGG 567 (893)
T ss_pred cCeEEeccccceEEEEEeeccCceeeeE--eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhcccc
Confidence 999999999999999998544 233333 3667899999999999999999999999999876554422111 111
Q ss_pred -----------cccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEE
Q 007411 530 -----------HIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTL 571 (604)
Q Consensus 530 -----------~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l 571 (604)
.......+.+++|+||.+|++|+....|++|++.++-+++.+
T Consensus 568 R~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkf 620 (893)
T KOG0291|consen 568 RKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKF 620 (893)
T ss_pred ccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeE
Confidence 112356788999999999999999999999999876555443
No 23
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.5e-32 Score=288.87 Aligned_cols=278 Identities=20% Similarity=0.406 Sum_probs=243.9
Q ss_pred CcccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCC------------------------------CC
Q 007411 298 HCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN------------------------------SG 347 (604)
Q Consensus 298 ~~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~------------------------------~~ 347 (604)
..-+|.-+..++..-...++|..|+++ +.+||.|-.|..|++|.+.. ..
T Consensus 363 ~~~lpSic~YT~~nt~~~v~ca~fSdd-ssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~ 441 (707)
T KOG0263|consen 363 RNSLPSICMYTFHNTYQGVTCAEFSDD-SSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSS 441 (707)
T ss_pred CCCCCcEEEEEEEEcCCcceeEeecCC-cchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCC
Confidence 445677788888888889999999999 88999999999999999842 11
Q ss_pred eeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCC-cceEEEEccCCCCCcEEEEEEcCCeEE
Q 007411 348 KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIV 426 (604)
Q Consensus 348 ~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~-~~~~~~~~~~~~~~~~lvsg~~dg~I~ 426 (604)
...+++.||.++|..+.|+|+.++|++||.|++||+|.+.+..++-.++.+. +++.+.|+|. +.+|++++.|++-+
T Consensus 442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~---GyYFatas~D~tAr 518 (707)
T KOG0263|consen 442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPR---GYYFATASHDQTAR 518 (707)
T ss_pred ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCC---ceEEEecCCCceee
Confidence 2345688999999999999999999999999999999999999999888654 4466777765 48999999999999
Q ss_pred EEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEc
Q 007411 427 QWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL 506 (604)
Q Consensus 427 iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~ 506 (604)
+|......+.+.+.+|.+.|.|+.|+|+..++++||.|.+|++||+.++..++.+. +|..+|.+++|+|+|++|++|+.
T Consensus 519 LWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~-GH~~~V~al~~Sp~Gr~LaSg~e 597 (707)
T KOG0263|consen 519 LWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFT-GHKGPVTALAFSPCGRYLASGDE 597 (707)
T ss_pred eeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEec-CCCCceEEEEEcCCCceEeeccc
Confidence 99999999999999999999999999999999999999999999999999988775 69999999999999999999999
Q ss_pred CCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCe--------------------
Q 007411 507 DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCK-------------------- 566 (604)
Q Consensus 507 Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~-------------------- 566 (604)
||.|.+||+.++..+ ..+.+| .+.+.++.||.+|..|++|+.|..|++||+....
T Consensus 598 d~~I~iWDl~~~~~v---~~l~~H--t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (707)
T KOG0263|consen 598 DGLIKIWDLANGSLV---KQLKGH--TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENN 672 (707)
T ss_pred CCcEEEEEcCCCcch---hhhhcc--cCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCC
Confidence 999999999987665 556677 6789999999999999999999999999985321
Q ss_pred ----eEEEEecCCCcEEEEEEec
Q 007411 567 ----VFRTLKCHEGVCIGCEWHP 585 (604)
Q Consensus 567 ----~~~~l~~h~~~V~~v~~sp 585 (604)
++.++..-..+|.++.|..
T Consensus 673 ~~~~llgs~~tK~tpv~~l~Ftr 695 (707)
T KOG0263|consen 673 ASSLLLGSFYTKNTPVVGLHFTR 695 (707)
T ss_pred CCcceeeeeeecCceEEEEEEec
Confidence 3455555566888899987
No 24
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=9.7e-32 Score=268.61 Aligned_cols=292 Identities=23% Similarity=0.382 Sum_probs=246.3
Q ss_pred ccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCC-CCeeeE--Ee------c----CCCCceeeEEEc
Q 007411 300 YIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN-SGKCMR--TY------M----GHSKAVRDISFC 366 (604)
Q Consensus 300 ~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~-~~~~~~--~~------~----~h~~~V~~l~fs 366 (604)
-+|...++.+. |..+|.+++|+|....+|++|+.|-+.++|++.. ...+.. .+ . ..+..|++++|+
T Consensus 166 ~I~~~~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn 244 (524)
T KOG0273|consen 166 EIPSSKAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWN 244 (524)
T ss_pred cccccceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEec
Confidence 46777777887 9999999999998455999999999999999953 111111 01 1 124679999999
Q ss_pred cCCCEEEEEECCCcEEEEECCCCcEEEEeeCC-CcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCc
Q 007411 367 NDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGA 445 (604)
Q Consensus 367 pdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~ 445 (604)
.+|..|++|++||.++||+.. |..+.++..+ .++..+.|+.. +++|++++.|+++.+||..+++..+.+.-|..+
T Consensus 245 ~~G~~LatG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~---G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~ 320 (524)
T KOG0273|consen 245 NDGTLLATGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKK---GTYILSGGVDGTTILWDAHTGTVKQQFEFHSAP 320 (524)
T ss_pred CCCCeEEEeecCcEEEEEecC-chhhhhhhccCCceEEEEEcCC---CCEEEeccCCccEEEEeccCceEEEeeeeccCC
Confidence 999999999999999999975 5566666544 34456666653 479999999999999999999999999999998
Q ss_pred eeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccc
Q 007411 446 VNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKK 525 (604)
Q Consensus 446 V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~ 525 (604)
-..+.|.. ...|++++.|+.|+|+.+....++.++.. |.+.|.++.|.|.+.+|++++.|++++||.........
T Consensus 321 ~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~G-H~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~--- 395 (524)
T KOG0273|consen 321 ALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIG-HHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVH--- 395 (524)
T ss_pred ccceEEec-CceEeecCCCceEEEEEecCCCcceeeec-ccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchh---
Confidence 88889974 45899999999999999999999988875 99999999999999999999999999999987655443
Q ss_pred cccCcccccceEEEEEcCCC---------CEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeC
Q 007411 526 RFAGHIVAGYACQVNFSPDG---------RFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW 596 (604)
Q Consensus 526 ~~~~~~~~~~v~~l~~spdg---------~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~ 596 (604)
.+..| ...|..+.|+|.| ..|++++.|++|++||+..+.++++|..|..+|.+++|+| ++.+|++|+.
T Consensus 396 ~l~~H--skei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~-~g~ylAsGs~ 472 (524)
T KOG0273|consen 396 DLQAH--SKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSP-NGRYLASGSL 472 (524)
T ss_pred hhhhh--ccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecC-CCcEEEecCC
Confidence 34445 4556778898864 4789999999999999999999999999999999999999 8899999999
Q ss_pred CCcEEEeC
Q 007411 597 DGLIKYWD 604 (604)
Q Consensus 597 DG~I~vWD 604 (604)
||.|.+|+
T Consensus 473 dg~V~iws 480 (524)
T KOG0273|consen 473 DGCVHIWS 480 (524)
T ss_pred CCeeEecc
Confidence 99999996
No 25
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.6e-31 Score=276.39 Aligned_cols=299 Identities=17% Similarity=0.368 Sum_probs=246.9
Q ss_pred cccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCe-eeEEecCCCCceeeEEEccCCCEEEEEEC
Q 007411 299 CYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGK-CMRTYMGHSKAVRDISFCNDGTKFLTASY 377 (604)
Q Consensus 299 ~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~-~~~~~~~h~~~V~~l~fspdg~~L~s~s~ 377 (604)
-|.|..+.+++.||...|++|.|+.+ .++|++|+.|.+++||.+..... ....+.+|...|..+-|..+...+++.+.
T Consensus 131 ~~~pFvl~r~~~g~fddi~si~Ws~D-Sr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvsk 209 (893)
T KOG0291|consen 131 EFNPFVLHRTYLGHFDDITSIDWSDD-SRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSK 209 (893)
T ss_pred ccCcceEeeeecCCccceeEEEeccC-CceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEec
Confidence 58899999999999999999999999 99999999999999999943222 35667899999999999999999999999
Q ss_pred CCcEEEEECCC-----------------------CcE-----EEE------ee-CCCcceEEEEccC-------------
Q 007411 378 DKNIKYWDTET-----------------------GQV-----IRT------FS-TGKIPYVVKLNPD------------- 409 (604)
Q Consensus 378 Dg~I~vWD~~t-----------------------~~~-----i~~------~~-~~~~~~~~~~~~~------------- 409 (604)
||.|.+|.... ++. ... +. ......+..+++.
T Consensus 210 dG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f 289 (893)
T KOG0291|consen 210 DGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEF 289 (893)
T ss_pred CceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCee
Confidence 99999997751 110 000 00 0000111111100
Q ss_pred --------------------------CCCCcEEEEEEcC-CeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEe
Q 007411 410 --------------------------DDKQNILLAGMSD-KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSS 462 (604)
Q Consensus 410 --------------------------~~~~~~lvsg~~d-g~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs 462 (604)
+..+..++.|+.. |.+.+|+.++...+...++|...+++++++|||+++++|+
T Consensus 290 ~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~ 369 (893)
T KOG0291|consen 290 GLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGA 369 (893)
T ss_pred EEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEecc
Confidence 0123456666654 8999999999999999999999999999999999999999
Q ss_pred CCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEc
Q 007411 463 DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 542 (604)
Q Consensus 463 ~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s 542 (604)
+||.|+|||...+-++.++.+ |...|+.+.|+..++.+++.|.||+|+.||+...... +++.... .....+++..
T Consensus 370 eDgKVKvWn~~SgfC~vTFte-Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNf---RTft~P~-p~QfscvavD 444 (893)
T KOG0291|consen 370 EDGKVKVWNTQSGFCFVTFTE-HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNF---RTFTSPE-PIQFSCVAVD 444 (893)
T ss_pred CCCcEEEEeccCceEEEEecc-CCCceEEEEEEecCCEEEEeecCCeEEeeeeccccee---eeecCCC-ceeeeEEEEc
Confidence 999999999999999999975 9999999999999999999999999999999765433 3344332 2345578999
Q ss_pred CCCCEEEEEcCCC-cEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007411 543 PDGRFVMSGDGEG-KCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 543 pdg~~L~sgs~dG-~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
|.|.++++|+.|. .|++|++++|+++-.+.+|.++|.+++|+| .++.|+++++|.+||+||
T Consensus 445 ~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~ 506 (893)
T KOG0291|consen 445 PSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSP-DGSLLASGSWDKTVRIWD 506 (893)
T ss_pred CCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcc-ccCeEEeccccceEEEEE
Confidence 9999999999876 699999999999999999999999999999 778999999999999997
No 26
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.9e-32 Score=283.02 Aligned_cols=328 Identities=20% Similarity=0.351 Sum_probs=256.5
Q ss_pred cCCCCCCccccCcceeeccCccccccceeecCCCccccCCCCcccCcceeEEecCCCCCeEEEEEcCCCC-CEEEEEECC
Q 007411 257 NAGGEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYG-HLILSAGMD 335 (604)
Q Consensus 257 ~~~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~fsp~~g-~~L~sgs~D 335 (604)
+.++.-...+.+++++.++.+.|...|.|-.. -..+.|.|+||.+.|.++.|+|+-. .+|++|..|
T Consensus 104 He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~-------------~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D 170 (775)
T KOG0319|consen 104 HEAPVITMAFDPTGTLLATGGADGRVKVWDIK-------------NGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATD 170 (775)
T ss_pred cCCCeEEEEEcCCCceEEeccccceEEEEEee-------------CCEEEEEecCCCceEEEEEeCCccchhheeecCCC
Confidence 44556666788889999999999999998543 3478999999999999999999732 468999999
Q ss_pred CcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcceEEEEccC------
Q 007411 336 TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPD------ 409 (604)
Q Consensus 336 g~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~------ 409 (604)
++|++||+.....++.++..|.+.|++++|++|+..+++++.|..|.|||+.+-+....+........+.+.+.
T Consensus 171 ~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~ 250 (775)
T KOG0319|consen 171 GTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKG 250 (775)
T ss_pred ceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcc
Confidence 99999999656667889999999999999999999999999999999999976554444332222222222111
Q ss_pred --------------------------------------------------------------------------------
Q 007411 410 -------------------------------------------------------------------------------- 409 (604)
Q Consensus 410 -------------------------------------------------------------------------------- 409 (604)
T Consensus 251 ~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~ 330 (775)
T KOG0319|consen 251 EYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMK 330 (775)
T ss_pred eEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeee
Confidence
Q ss_pred --CCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeE----------
Q 007411 410 --DDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVV---------- 477 (604)
Q Consensus 410 --~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~---------- 477 (604)
++....++++++.+.+++|++.+..+. .+.+|...|.++....+|-+|++||.|+++++|.++....
T Consensus 331 ~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~g 409 (775)
T KOG0319|consen 331 FLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANG 409 (775)
T ss_pred ecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcc
Confidence 111234555555555555555544433 5567888888888666777888888888888886621100
Q ss_pred --------------------------EEE-------------------eecCCCCcccEEEEcCCCCEEEEEEcCCeEEE
Q 007411 478 --------------------------IKY-------------------ISEPHMHSMPSISLHPNTNWLAAQSLDNQILI 512 (604)
Q Consensus 478 --------------------------~~~-------------------~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~i 512 (604)
++. ....|...|++++++|+.++|++||.|.+.+|
T Consensus 410 H~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKi 489 (775)
T KOG0319|consen 410 HTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKI 489 (775)
T ss_pred cccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceee
Confidence 000 11236677999999999999999999999999
Q ss_pred EEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEE
Q 007411 513 YSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVA 592 (604)
Q Consensus 513 wd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~ 592 (604)
|++... .....+.|| ...+.++.|+|..+.++++|.|++|+||.+.+..++++|.+|...|..+.|.. ++..|+
T Consensus 490 W~le~~---~l~~vLsGH--~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~-~~~qli 563 (775)
T KOG0319|consen 490 WDLEQL---RLLGVLSGH--TRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIR-NGKQLI 563 (775)
T ss_pred ecccCc---eEEEEeeCC--ccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeee-CCcEEE
Confidence 999843 334678888 46688999999999999999999999999999999999999999999999998 788999
Q ss_pred EEeCCCcEEEeC
Q 007411 593 TCGWDGLIKYWD 604 (604)
Q Consensus 593 tgg~DG~I~vWD 604 (604)
+|+.||.|++||
T Consensus 564 S~~adGliKlWn 575 (775)
T KOG0319|consen 564 SAGADGLIKLWN 575 (775)
T ss_pred eccCCCcEEEEe
Confidence 999999999996
No 27
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=3.7e-33 Score=268.77 Aligned_cols=268 Identities=25% Similarity=0.484 Sum_probs=229.0
Q ss_pred CCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcE
Q 007411 312 HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQV 391 (604)
Q Consensus 312 H~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~ 391 (604)
..++|+|+.+. ...+++|..|.+|+|||. ++..+++.+.||++.|.|+.| +.+.|++|+.|.+|+|||+++|++
T Consensus 196 ~skgVYClQYD---D~kiVSGlrDnTikiWD~-n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~ 269 (499)
T KOG0281|consen 196 NSKGVYCLQYD---DEKIVSGLRDNTIKIWDK-NSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEP 269 (499)
T ss_pred cCCceEEEEec---chhhhcccccCceEEecc-ccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCch
Confidence 56789999986 458999999999999999 788999999999999999999 456999999999999999999999
Q ss_pred EEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCc---eEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEE
Q 007411 392 IRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE---ITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLR 468 (604)
Q Consensus 392 i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~---~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~ 468 (604)
+.++-. +...++.+...+ .++++++.|.+|.+||+.+.. +...+.+|..+|+.+.|+ .++++++|.|.+|+
T Consensus 270 l~tlih-HceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTik 343 (499)
T KOG0281|consen 270 LNTLIH-HCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIK 343 (499)
T ss_pred hhHHhh-hcceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEE
Confidence 988754 334444444433 689999999999999998764 334567999999999995 46999999999999
Q ss_pred EEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEE
Q 007411 469 VWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFV 548 (604)
Q Consensus 469 iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L 548 (604)
+|++.+...++.+. +|...|.|+.+ .++++++|+.|++|++||+..+.++ ..+.|| ...|.++.| |.+.|
T Consensus 344 vW~~st~efvRtl~-gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cL---RvLeGH--EeLvRciRF--d~krI 413 (499)
T KOG0281|consen 344 VWSTSTCEFVRTLN-GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACL---RVLEGH--EELVRCIRF--DNKRI 413 (499)
T ss_pred EEeccceeeehhhh-cccccceehhc--cCeEEEecCCCceEEEEeccccHHH---HHHhch--HHhhhheee--cCcee
Confidence 99999999998875 58888888776 6899999999999999999988665 566777 566778888 66799
Q ss_pred EEEcCCCcEEEEeCCCCe---------eEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007411 549 MSGDGEGKCWFWDWKSCK---------VFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 549 ~sgs~dG~I~iwd~~t~~---------~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
++|..||+|++||+.++. ++.++..|++.|..+.| +...+++++-|.+|.|||
T Consensus 414 VSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF---D~fqIvsssHddtILiWd 475 (499)
T KOG0281|consen 414 VSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF---DEFQIISSSHDDTILIWD 475 (499)
T ss_pred eeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee---cceEEEeccCCCeEEEEE
Confidence 999999999999997653 45566679999999999 446899999999999997
No 28
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.8e-30 Score=242.20 Aligned_cols=286 Identities=20% Similarity=0.392 Sum_probs=233.3
Q ss_pred ceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCC--CCeeeEEe-cCCCCceeeEEEccCCCEEEEEECCCc
Q 007411 304 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN--SGKCMRTY-MGHSKAVRDISFCNDGTKFLTASYDKN 380 (604)
Q Consensus 304 ~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~--~~~~~~~~-~~h~~~V~~l~fspdg~~L~s~s~Dg~ 380 (604)
..+++++||.+.|..++|+|-.|.+|+||+.|..|+||+... +-.+...+ .+|...|++++|+|.|++|+++|+|.+
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t 84 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT 84 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence 357889999999999999997677999999999999999842 12333333 379999999999999999999999999
Q ss_pred EEEEECCCC--cEEEEeeCCC-cceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCC---ceEEEEcCcCCceeEEEEeCC
Q 007411 381 IKYWDTETG--QVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK---EITQEYDQHLGAVNTITFVDS 454 (604)
Q Consensus 381 I~vWD~~t~--~~i~~~~~~~-~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~---~~~~~~~~h~~~V~~i~~sp~ 454 (604)
+.||.-..+ +++..+..+. .+.+++|+.++ ++|++++.|+.|.+|.+..+ ++...++.|...|..+.|+|.
T Consensus 85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG---~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt 161 (312)
T KOG0645|consen 85 VVIWKKEDGEFECVATLEGHENEVKCVAWSASG---NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPT 161 (312)
T ss_pred EEEeecCCCceeEEeeeeccccceeEEEEcCCC---CEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCC
Confidence 999987654 5666666543 45677787754 79999999999999998754 577889999999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCC---CeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcc
Q 007411 455 NRRFVTSSDDKSLRVWEFGI---PVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHI 531 (604)
Q Consensus 455 ~~~l~sgs~Dg~I~iwdl~~---~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~ 531 (604)
..+|+++|.|.+|++|.-.. -.+...+ ..|...|.+++|++.|..|++++.|++|+||.....- .+.
T Consensus 162 ~dlL~S~SYDnTIk~~~~~~dddW~c~~tl-~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~---------~~~ 231 (312)
T KOG0645|consen 162 EDLLFSCSYDNTIKVYRDEDDDDWECVQTL-DGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL---------SGM 231 (312)
T ss_pred cceeEEeccCCeEEEEeecCCCCeeEEEEe-cCccceEEEEEecCCCceEEEecCCcceEeeeeccCc---------chh
Confidence 99999999999999998762 2345555 4577899999999999999999999999999865321 111
Q ss_pred cccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCC------eeEE-EEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007411 532 VAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC------KVFR-TLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 532 ~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~------~~~~-~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
....+..+.|. ...|++++.|+.|++|.-... +++. .-.+|...|+++.|.|....+|++||.||.|++|.
T Consensus 232 ~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~ 309 (312)
T KOG0645|consen 232 HSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWE 309 (312)
T ss_pred cccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEE
Confidence 24556678887 458999999999999976542 1222 33478899999999996688999999999999993
No 29
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=2.3e-31 Score=248.95 Aligned_cols=284 Identities=19% Similarity=0.309 Sum_probs=245.9
Q ss_pred EecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECC
Q 007411 308 TWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE 387 (604)
Q Consensus 308 tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~ 387 (604)
.++||..+++.|.|+.+ |.+|++|+.|.++.||-. .+++.+-++.||++.|.|+..+.+.+++++|+.|.+++|||++
T Consensus 5 ~l~GHERplTqiKyN~e-GDLlFscaKD~~~~vw~s-~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNRE-GDLLFSCAKDSTPTVWYS-LNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE 82 (327)
T ss_pred ccccCccccceEEecCC-CcEEEEecCCCCceEEEe-cCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcC
Confidence 46799999999999999 999999999999999987 6899999999999999999999999999999999999999999
Q ss_pred CCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEc-----CCeEEEEeCC-------CCceEEEEcCcCCceeEEEEeCCC
Q 007411 388 TGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMS-----DKKIVQWDMN-------TKEITQEYDQHLGAVNTITFVDSN 455 (604)
Q Consensus 388 t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~-----dg~I~iwD~~-------s~~~~~~~~~h~~~V~~i~~sp~~ 455 (604)
+|+++..++.+..+..+.|.+.+ +++++... .+.|.++|++ +.++...+..+...++.+.|.|-+
T Consensus 83 tGk~la~~k~~~~Vk~~~F~~~g---n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~ 159 (327)
T KOG0643|consen 83 TGKQLATWKTNSPVKRVDFSFGG---NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLG 159 (327)
T ss_pred CCcEEEEeecCCeeEEEeeccCC---cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccC
Confidence 99999999999999999999865 45555543 4689999998 456678888899999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccc
Q 007411 456 RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGY 535 (604)
Q Consensus 456 ~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 535 (604)
..|++|..||.|.+||++++.........|...|+.|.++++..+++++|.|.+-++||..+-..+. .+.. ..+
T Consensus 160 ~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~K---ty~t---e~P 233 (327)
T KOG0643|consen 160 ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLK---TYTT---ERP 233 (327)
T ss_pred CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEE---Eeee---ccc
Confidence 9999999999999999999877777767799999999999999999999999999999998755443 3322 467
Q ss_pred eEEEEEcCCCCEEEEEcCCCc--------------EEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEE
Q 007411 536 ACQVNFSPDGRFVMSGDGEGK--------------CWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIK 601 (604)
Q Consensus 536 v~~l~~spdg~~L~sgs~dG~--------------I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~ 601 (604)
+++.+++|-...++.|+.... -++|++-..+.+..+++|-++|++++||| ++...++||.||.|+
T Consensus 234 vN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhP-dGksYsSGGEDG~VR 312 (327)
T KOG0643|consen 234 VNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHP-DGKSYSSGGEDGYVR 312 (327)
T ss_pred ccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECC-CCcccccCCCCceEE
Confidence 888999998888877764322 23333334456788899999999999999 677899999999999
Q ss_pred Ee
Q 007411 602 YW 603 (604)
Q Consensus 602 vW 603 (604)
+.
T Consensus 313 ~h 314 (327)
T KOG0643|consen 313 LH 314 (327)
T ss_pred EE
Confidence 73
No 30
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=5.4e-30 Score=296.15 Aligned_cols=286 Identities=15% Similarity=0.285 Sum_probs=230.3
Q ss_pred ecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCC---CC----eeeEEecCCCCceeeEEEcc-CCCEEEEEECCCc
Q 007411 309 WSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN---SG----KCMRTYMGHSKAVRDISFCN-DGTKFLTASYDKN 380 (604)
Q Consensus 309 l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~---~~----~~~~~~~~h~~~V~~l~fsp-dg~~L~s~s~Dg~ 380 (604)
+.+|.+.|++++|+|+ +++|++|+.|+.|+||++.. .+ .+...+. +...|.+++|++ ++.+|++++.||+
T Consensus 479 ~~~~~~~V~~i~fs~d-g~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~ 556 (793)
T PLN00181 479 LLNSSNLVCAIGFDRD-GEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGV 556 (793)
T ss_pred ccCCCCcEEEEEECCC-CCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCe
Confidence 4459999999999999 99999999999999999732 11 1223333 456799999987 5789999999999
Q ss_pred EEEEECCCCcEEEEeeCC-CcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEe-CCCCEE
Q 007411 381 IKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFV-DSNRRF 458 (604)
Q Consensus 381 I~vWD~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~s-p~~~~l 458 (604)
|+|||+.+++.+..+..+ ..+.++.|++. ++.+|++|+.|+.|++||++++..+..+..+ ..|.++.|+ +++.+|
T Consensus 557 v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~--~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~l 633 (793)
T PLN00181 557 VQVWDVARSQLVTEMKEHEKRVWSIDYSSA--DPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSL 633 (793)
T ss_pred EEEEECCCCeEEEEecCCCCCEEEEEEcCC--CCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEE
Confidence 999999999988887654 33556666653 3478999999999999999999988888754 689999995 568999
Q ss_pred EEEeCCCcEEEEECCCCeE-EEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCce---eecccccccCccccc
Q 007411 459 VTSSDDKSLRVWEFGIPVV-IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF---QLNKKKRFAGHIVAG 534 (604)
Q Consensus 459 ~sgs~Dg~I~iwdl~~~~~-~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~---~~~~~~~~~~~~~~~ 534 (604)
++|+.||.|++||++.... +..+ ..|...|.++.|. ++.+|++++.|+.|++||++... .......+.+| ..
T Consensus 634 atgs~dg~I~iwD~~~~~~~~~~~-~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh--~~ 709 (793)
T PLN00181 634 AFGSADHKVYYYDLRNPKLPLCTM-IGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGH--TN 709 (793)
T ss_pred EEEeCCCeEEEEECCCCCccceEe-cCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCC--CC
Confidence 9999999999999987653 3333 4688899999997 68899999999999999987432 11223456666 45
Q ss_pred ceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEE-------------ecCCCcEEEEEEecCCCCEEEEEeCCCcEE
Q 007411 535 YACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTL-------------KCHEGVCIGCEWHPLEQSKVATCGWDGLIK 601 (604)
Q Consensus 535 ~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l-------------~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~ 601 (604)
.+..++|+|++.+|++|+.||.|++|+.....++..+ ..|...|.+++|+| ++..|++|+.||.|+
T Consensus 710 ~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~-~~~~lva~~~dG~I~ 788 (793)
T PLN00181 710 VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRG-QSSTLVAANSTGNIK 788 (793)
T ss_pred CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcC-CCCeEEEecCCCcEE
Confidence 6778999999999999999999999998766544332 23445799999999 778999999999999
Q ss_pred EeC
Q 007411 602 YWD 604 (604)
Q Consensus 602 vWD 604 (604)
|||
T Consensus 789 i~~ 791 (793)
T PLN00181 789 ILE 791 (793)
T ss_pred EEe
Confidence 997
No 31
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.2e-30 Score=244.08 Aligned_cols=258 Identities=23% Similarity=0.364 Sum_probs=223.2
Q ss_pred CCCcccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCC--C---eeeEEecCCCCceeeEEEccCCC
Q 007411 296 NDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNS--G---KCMRTYMGHSKAVRDISFCNDGT 370 (604)
Q Consensus 296 ~~~~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~--~---~~~~~~~~h~~~V~~l~fspdg~ 370 (604)
..|+-....-++.+.-.+..|..++|+|. ++++|.|+.|+...||++... . +..+.+.+|.+-+.|+.|.+| .
T Consensus 80 IvWDs~TtnK~haipl~s~WVMtCA~sPS-g~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~ 157 (343)
T KOG0286|consen 80 IVWDSFTTNKVHAIPLPSSWVMTCAYSPS-GNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-N 157 (343)
T ss_pred EEEEcccccceeEEecCceeEEEEEECCC-CCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-C
Confidence 34566666677788888899999999999 999999999999999999522 1 456789999999999999874 5
Q ss_pred EEEEEECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEE
Q 007411 371 KFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTIT 450 (604)
Q Consensus 371 ~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~ 450 (604)
.|++++.|.+..+||+++++.+..|.. |..-++.+...+.+.+.|++|+.|+..++||+|.+..++.|.+|.+.|+++.
T Consensus 158 ~ilT~SGD~TCalWDie~g~~~~~f~G-H~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ 236 (343)
T KOG0286|consen 158 HILTGSGDMTCALWDIETGQQTQVFHG-HTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVR 236 (343)
T ss_pred ceEecCCCceEEEEEcccceEEEEecC-CcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEE
Confidence 799999999999999999999999974 4444444444444568999999999999999999999999999999999999
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCCeEEEEeec-CCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccC
Q 007411 451 FVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISE-PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAG 529 (604)
Q Consensus 451 ~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~-~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~ 529 (604)
|.|+|.-|++|++|++.++||++..+.+..+.. ....+|++++|+..|++|++|..|..+.+||.-.+... ..+.+
T Consensus 237 ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~v---g~L~G 313 (343)
T KOG0286|consen 237 FFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERV---GVLAG 313 (343)
T ss_pred EccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceE---EEeec
Confidence 999999999999999999999999877766643 45567999999999999999999999999998766544 45667
Q ss_pred cccccceEEEEEcCCCCEEEEEcCCCcEEEEe
Q 007411 530 HIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 561 (604)
Q Consensus 530 ~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd 561 (604)
| ...|.++..+|||..|++|+.|..|+||.
T Consensus 314 H--eNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 314 H--ENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred c--CCeeEEEEECCCCcEEEecchhHheeecC
Confidence 7 56799999999999999999999999994
No 32
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.6e-31 Score=282.70 Aligned_cols=247 Identities=25% Similarity=0.493 Sum_probs=217.2
Q ss_pred eeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCc-------------------------------EEE-Ee
Q 007411 348 KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ-------------------------------VIR-TF 395 (604)
Q Consensus 348 ~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~-------------------------------~i~-~~ 395 (604)
-|+.++..-...++|..|++++.+||.|..|..|++|.+...+ ... -.
T Consensus 369 ic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~ 448 (707)
T KOG0263|consen 369 ICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLY 448 (707)
T ss_pred EEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEee
Confidence 4445555556789999999999999999999999999887321 001 11
Q ss_pred eCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 007411 396 STGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP 475 (604)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~ 475 (604)
.+..+++.+.|+|+. ++|++++.|++|++|.+.+...+-.+.+|..+|.++.|+|.|-+|+|+|.|++.++|.....
T Consensus 449 GH~GPVyg~sFsPd~---rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~ 525 (707)
T KOG0263|consen 449 GHSGPVYGCSFSPDR---RFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN 525 (707)
T ss_pred cCCCceeeeeecccc---cceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccC
Confidence 223345566677654 78999999999999999999999999999999999999999999999999999999999887
Q ss_pred eEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCC
Q 007411 476 VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG 555 (604)
Q Consensus 476 ~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG 555 (604)
.+.+.+. +|...|.|+.|||+..|+++||.|.+|++||+.++..+ +.|.|| .++|.+++|||+|++|++|+.||
T Consensus 526 ~PlRifa-ghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~V---RiF~GH--~~~V~al~~Sp~Gr~LaSg~ed~ 599 (707)
T KOG0263|consen 526 KPLRIFA-GHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSV---RIFTGH--KGPVTALAFSPCGRYLASGDEDG 599 (707)
T ss_pred Cchhhhc-ccccccceEEECCcccccccCCCCceEEEEEcCCCcEE---EEecCC--CCceEEEEEcCCCceEeecccCC
Confidence 7776664 69999999999999999999999999999999988765 567888 68899999999999999999999
Q ss_pred cEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007411 556 KCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 556 ~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
.|.+||+.+++++..+.+|.+.|.++.|+. ++..||+||.|.+|++||
T Consensus 600 ~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~-dg~vLasgg~DnsV~lWD 647 (707)
T KOG0263|consen 600 LIKIWDLANGSLVKQLKGHTGTIYSLSFSR-DGNVLASGGADNSVRLWD 647 (707)
T ss_pred cEEEEEcCCCcchhhhhcccCceeEEEEec-CCCEEEecCCCCeEEEEE
Confidence 999999999999999999999999999999 788999999999999998
No 33
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.98 E-value=1.4e-31 Score=247.86 Aligned_cols=283 Identities=23% Similarity=0.407 Sum_probs=252.1
Q ss_pred EEecCCCCCeEEEEEcCC--CCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEE
Q 007411 307 HTWSGHTKGVSAIRFFPK--YGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYW 384 (604)
Q Consensus 307 ~tl~gH~~~V~~l~fsp~--~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vW 384 (604)
.+..||+.+|..++|+|- .|-+|++++.||.-.+-+- .++.-+-+|.+|.+.|.+.+++.+..+-++++.|-+-+||
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g-~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw 86 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNG-DTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVW 86 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccC-CCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhh
Confidence 356799999999999962 3889999999999888877 6888999999999999999999998899999999999999
Q ss_pred ECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCc-eEEEEcCcCCceeEEEEeCCCCEEEEEeC
Q 007411 385 DTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE-ITQEYDQHLGAVNTITFVDSNRRFVTSSD 463 (604)
Q Consensus 385 D~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~-~~~~~~~h~~~V~~i~~sp~~~~l~sgs~ 463 (604)
|.-+|..+.+|...+.+..++|..+. +.|++|+.++.+++||++..+ +..++.+|.+.|..+.|....+.|+++++
T Consensus 87 ~a~tgdelhsf~hkhivk~~af~~ds---~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSad 163 (334)
T KOG0278|consen 87 DAVTGDELHSFEHKHIVKAVAFSQDS---NYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSAD 163 (334)
T ss_pred hhhhhhhhhhhhhhheeeeEEecccc---hhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeecc
Confidence 99999999999999999999998765 679999999999999998764 56788999999999999999999999999
Q ss_pred CCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcC
Q 007411 464 DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP 543 (604)
Q Consensus 464 Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp 543 (604)
|++||+||.+++..++.+. ...+|+++.++++|.+|.++ ..+.|.+||..+-..+.... ....|.+.+++|
T Consensus 164 d~tVRLWD~rTgt~v~sL~--~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k------~P~nV~SASL~P 234 (334)
T KOG0278|consen 164 DKTVRLWDHRTGTEVQSLE--FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYK------MPCNVESASLHP 234 (334)
T ss_pred CCceEEEEeccCcEEEEEe--cCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeecc------CccccccccccC
Confidence 9999999999999999885 56789999999999877664 57789999998754443222 234567789999
Q ss_pred CCCEEEEEcCCCcEEEEeCCCCeeEEEE-ecCCCcEEEEEEecCCCCEEEEEeCCCcEEEe
Q 007411 544 DGRFVMSGDGEGKCWFWDWKSCKVFRTL-KCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 603 (604)
Q Consensus 544 dg~~L~sgs~dG~I~iwd~~t~~~~~~l-~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vW 603 (604)
+..++++|+.|+.++.||..++..+..+ ++|.++|.++.|+| ++...++|+.||+|++|
T Consensus 235 ~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSP-dGE~yAsGSEDGTirlW 294 (334)
T KOG0278|consen 235 KKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSP-DGELYASGSEDGTIRLW 294 (334)
T ss_pred CCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECC-CCceeeccCCCceEEEE
Confidence 9999999999999999999999999886 89999999999999 78899999999999999
No 34
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.98 E-value=1.2e-30 Score=273.19 Aligned_cols=290 Identities=20% Similarity=0.332 Sum_probs=246.6
Q ss_pred cceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEE
Q 007411 303 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIK 382 (604)
Q Consensus 303 ~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~ 382 (604)
-+++..+-|..+.|..++|--...++|+.++..+.++++++ .+..+. .+.||...|.++....+|.+|+||+.|.+++
T Consensus 313 l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~-~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svi 390 (775)
T KOG0319|consen 313 LTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTL-PTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVI 390 (775)
T ss_pred cEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEec-CCCceE-EEeCchhheeeeeecccCcEEEEecCCceEE
Confidence 35667788999999999997655799999999999999988 444444 8899999999999666788999999999999
Q ss_pred EEECCCCcEEEEe---eCCC--cceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCc-----eEE----EEcCcCCceeE
Q 007411 383 YWDTETGQVIRTF---STGK--IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE-----ITQ----EYDQHLGAVNT 448 (604)
Q Consensus 383 vWD~~t~~~i~~~---~~~~--~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~-----~~~----~~~~h~~~V~~ 448 (604)
+|.++.+...... ..++ ...++++ ......+|++++.|++|++|++...+ .+. ....|...|+|
T Consensus 391 lWr~~~~~~~~~~~a~~~gH~~svgava~--~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~ 468 (775)
T KOG0319|consen 391 LWRLNNNCSKSLCVAQANGHTNSVGAVAG--SKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINC 468 (775)
T ss_pred EEEecCCcchhhhhhhhcccccccceeee--cccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccc
Confidence 9998554432211 1233 3344555 33455899999999999999997622 111 23469999999
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeccccccc
Q 007411 449 ITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFA 528 (604)
Q Consensus 449 i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~ 528 (604)
++++|+..+|+|||.|++.+||++........+. +|...+.++.|+|..+.++++|.|.+|+||.+.+..++ +++.
T Consensus 469 Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLs-GH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSCl---kT~e 544 (775)
T KOG0319|consen 469 VAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLS-GHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCL---KTFE 544 (775)
T ss_pred eEecCCCceEEecccccceeeecccCceEEEEee-CCccceEEEEeccccceeEeccCCceEEEEEeccceee---eeec
Confidence 9999999999999999999999999777777775 69999999999999999999999999999999987655 7788
Q ss_pred CcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEe
Q 007411 529 GHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 603 (604)
Q Consensus 529 ~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vW 603 (604)
|| ...|..+.|-.+|..|++++.||-|++|++++..|+.++.+|...|++++.++ ...+++|||.||.|.+|
T Consensus 545 GH--~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~-~~~~~~tgg~Dg~i~~w 616 (775)
T KOG0319|consen 545 GH--TSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSP-LLDMFVTGGGDGRIIFW 616 (775)
T ss_pred Cc--cceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecC-ccceeEecCCCeEEEEe
Confidence 88 46688899999999999999999999999999999999999999999999999 66799999999999999
No 35
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=2.3e-30 Score=252.81 Aligned_cols=289 Identities=20% Similarity=0.396 Sum_probs=239.6
Q ss_pred cCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCC---EEEEEEC
Q 007411 301 IPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGT---KFLTASY 377 (604)
Q Consensus 301 ~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~---~L~s~s~ 377 (604)
.|++.++.+ -|.+.|.+|... +..|++|+.||.++|||. .|++..++.||.++|.+++|..... .|++++.
T Consensus 94 ~aP~pl~~~-~hdDWVSsv~~~---~~~IltgsYDg~~riWd~--~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~ 167 (423)
T KOG0313|consen 94 TAPKPLQCF-LHDDWVSSVKGA---SKWILTGSYDGTSRIWDL--KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASM 167 (423)
T ss_pred CCCCccccc-cchhhhhhhccc---CceEEEeecCCeeEEEec--CCceEEEEecCCcceeeeEEEecCCccceEEEecC
Confidence 344444444 488999999887 569999999999999997 8999999999999999999866433 5999999
Q ss_pred CCcEEEEECCCCcEEEEe-e--CCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCC-----------------------
Q 007411 378 DKNIKYWDTETGQVIRTF-S--TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN----------------------- 431 (604)
Q Consensus 378 Dg~I~vWD~~t~~~i~~~-~--~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~----------------------- 431 (604)
|.++++|-++.+...... . .+|...+-++...+ .+..+++|+.|..|.+|+..
T Consensus 168 Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~-sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~ 246 (423)
T KOG0313|consen 168 DQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDS-SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKE 246 (423)
T ss_pred CceEEEEEecCchhhhhHHhHhcccccceeEEEecC-CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhc
Confidence 999999999877643221 1 14443333333322 23789999999999999932
Q ss_pred --CCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCe
Q 007411 432 --TKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQ 509 (604)
Q Consensus 432 --s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~ 509 (604)
++.++..+.+|..+|.++.|++ ...++++|.|.+|+.||+.++.....+. ...++.++.++|..++|++|+.|..
T Consensus 247 ~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~--~~ksl~~i~~~~~~~Ll~~gssdr~ 323 (423)
T KOG0313|consen 247 GGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT--TNKSLNCISYSPLSKLLASGSSDRH 323 (423)
T ss_pred ccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeee--cCcceeEeecccccceeeecCCCCc
Confidence 1234667889999999999998 6789999999999999999999888875 5678999999999999999999999
Q ss_pred EEEEEcCCceeecccccccCcccccceEEEEEcCCC-CEEEEEcCCCcEEEEeCCCCe-eEEEEecCCCcEEEEEEecCC
Q 007411 510 ILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDG-RFVMSGDGEGKCWFWDWKSCK-VFRTLKCHEGVCIGCEWHPLE 587 (604)
Q Consensus 510 I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg-~~L~sgs~dG~I~iwd~~t~~-~~~~l~~h~~~V~~v~~sp~~ 587 (604)
|++||.+++.--.....+.+| ..+|..+.|+|.. ..|++|+.|+++++||+++.+ ++..+.+|...|.++.|..
T Consensus 324 irl~DPR~~~gs~v~~s~~gH--~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-- 399 (423)
T KOG0313|consen 324 IRLWDPRTGDGSVVSQSLIGH--KNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-- 399 (423)
T ss_pred eeecCCCCCCCceeEEeeecc--hhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC--
Confidence 999999987666666778888 4589999999965 457899999999999999988 9999999999999999985
Q ss_pred CCEEEEEeCCCcEEEe
Q 007411 588 QSKVATCGWDGLIKYW 603 (604)
Q Consensus 588 ~~~l~tgg~DG~I~vW 603 (604)
+..|++||.|.+|+|+
T Consensus 400 ~~~IvSGGaD~~l~i~ 415 (423)
T KOG0313|consen 400 GGLIVSGGADNKLRIF 415 (423)
T ss_pred CceEEeccCcceEEEe
Confidence 5689999999999986
No 36
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.4e-31 Score=255.75 Aligned_cols=295 Identities=25% Similarity=0.431 Sum_probs=249.0
Q ss_pred cCcceeEEec-CCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeE--------EecCCCCceeeEEEccCCCE
Q 007411 301 IPKRLVHTWS-GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMR--------TYMGHSKAVRDISFCNDGTK 371 (604)
Q Consensus 301 ~p~~~i~tl~-gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~--------~~~~h~~~V~~l~fspdg~~ 371 (604)
.|..+.++++ |....+-|..|+|+ |++|++|+.||.|.+|+. .+++..+ .+.-+..+|.|++|+.|...
T Consensus 200 ~Pt~l~r~IKFg~KSh~EcA~FSPD-gqyLvsgSvDGFiEVWny-~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEM 277 (508)
T KOG0275|consen 200 YPTQLARSIKFGQKSHVECARFSPD-GQYLVSGSVDGFIEVWNY-TTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEM 277 (508)
T ss_pred chHHhhhheecccccchhheeeCCC-CceEeeccccceeeeehh-ccchhhhhhhhhhhcceeecccceEEEeecccHHH
Confidence 3455555554 56677999999999 999999999999999998 4565433 34458899999999999999
Q ss_pred EEEEECCCcEEEEECCCCcEEEEeeCCCcc--eEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEE
Q 007411 372 FLTASYDKNIKYWDTETGQVIRTFSTGKIP--YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTI 449 (604)
Q Consensus 372 L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~--~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i 449 (604)
|++|+.||.|+||.+++|.|++.|...+.. .++.|+.++ ..+++++.|..+++.-+.+|+++.++++|.+-|+..
T Consensus 278 lAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~---SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a 354 (508)
T KOG0275|consen 278 LASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDN---SQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEA 354 (508)
T ss_pred hhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCc---chhhcccccceEEEeccccchhHHHhcCccccccce
Confidence 999999999999999999999999865554 455555443 468999999999999999999999999999999999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeec-CCCCcccEEEEcCC-CCEEEEEEcCCeEEEEEcCCceeecccccc
Q 007411 450 TFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISE-PHMHSMPSISLHPN-TNWLAAQSLDNQILIYSTRERFQLNKKKRF 527 (604)
Q Consensus 450 ~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~-~~~~~v~~l~~sp~-g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~ 527 (604)
.|.++|.+++++|.||+|++|+..+..++.++.. +...+|.++..-|. ...+++|...++|+|.++... .+... .
T Consensus 355 ~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ-vVrsf--s 431 (508)
T KOG0275|consen 355 TFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ-VVRSF--S 431 (508)
T ss_pred EEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccce-EEeee--c
Confidence 9999999999999999999999999988877754 34556888877775 568899999999999988642 22221 1
Q ss_pred cCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007411 528 AGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 528 ~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
.|....+...+.+.||.|.++++.+.|+.++.|.+.+|++..++..|...|.+++-+| ..++|++-+.||.+++|.
T Consensus 432 SGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHP-HqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 432 SGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHP-HQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCc-ccchhhhhcccchhhhcC
Confidence 2222345566688999999999999999999999999999999999999999999999 788999999999999993
No 37
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=8.8e-30 Score=270.20 Aligned_cols=284 Identities=20% Similarity=0.335 Sum_probs=248.5
Q ss_pred EecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECC
Q 007411 308 TWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE 387 (604)
Q Consensus 308 tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~ 387 (604)
.|...+..|..++|+|. ..+++++-..|.|++||. .-+.++..|..|.++|+.++|+|.+.+|+||+.|-.|+||+..
T Consensus 4 kfEskSsRvKglsFHP~-rPwILtslHsG~IQlWDY-RM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk 81 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPK-RPWILTSLHSGVIQLWDY-RMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK 81 (1202)
T ss_pred hhhcccccccceecCCC-CCEEEEeecCceeeeehh-hhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecc
Confidence 45566788999999999 999999999999999999 7889999999999999999999999999999999999999999
Q ss_pred CCcEEEEeeCCC-cceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCc
Q 007411 388 TGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKS 466 (604)
Q Consensus 388 t~~~i~~~~~~~-~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~ 466 (604)
+.+|+.++..+- .+..+.|++.- ..+++++.|.+|+||+..+++++..+.+|..-|.|..|+|....++++|-|.+
T Consensus 82 ~rrclftL~GHlDYVRt~~FHhey---PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQT 158 (1202)
T KOG0292|consen 82 TRRCLFTLLGHLDYVRTVFFHHEY---PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQT 158 (1202)
T ss_pred cceehhhhccccceeEEeeccCCC---ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccce
Confidence 999998885542 23344455432 68999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCC----------------------------CeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCc
Q 007411 467 LRVWEFGI----------------------------PVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRER 518 (604)
Q Consensus 467 I~iwdl~~----------------------------~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~ 518 (604)
|||||+.. ...++.+.++|...|+.++|+|.-.+|++|+.|..|++|.+...
T Consensus 159 VRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnet 238 (1202)
T KOG0292|consen 159 VRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET 238 (1202)
T ss_pred EEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccc
Confidence 99999831 12356667889999999999999999999999999999998653
Q ss_pred eeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCC
Q 007411 519 FQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDG 598 (604)
Q Consensus 519 ~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG 598 (604)
......+..|| ...|.++-|+|...+|++.+.|+.|++||+...+.+.+++...+..+.++-+| ..+++++|-+.|
T Consensus 239 -KaWEvDtcrgH--~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP-~lNLfAAgHDsG 314 (1202)
T KOG0292|consen 239 -KAWEVDTCRGH--YNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHP-ELNLFAAGHDSG 314 (1202)
T ss_pred -cceeehhhhcc--cCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecC-CcceeeeecCCc
Confidence 34455677888 45688999999999999999999999999999999999998788899999999 677777766555
Q ss_pred cE
Q 007411 599 LI 600 (604)
Q Consensus 599 ~I 600 (604)
.+
T Consensus 315 m~ 316 (1202)
T KOG0292|consen 315 MI 316 (1202)
T ss_pred eE
Confidence 44
No 38
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=2.8e-29 Score=262.98 Aligned_cols=313 Identities=24% Similarity=0.414 Sum_probs=237.9
Q ss_pred eeeccCccccccceeecCCCccccCCCCcccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeee
Q 007411 271 TFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCM 350 (604)
Q Consensus 271 ~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~ 350 (604)
.+.+-+-.|..+|.|-- .......++.||...|+++.|... |.+|+|||.|+.|.+||+ -...-+
T Consensus 78 l~lAVGYaDGsVqif~~-------------~s~~~~~tfngHK~AVt~l~fd~~-G~rlaSGskDt~IIvwDl-V~E~Gl 142 (888)
T KOG0306|consen 78 LLLAVGYADGSVQIFSL-------------ESEEILITFNGHKAAVTTLKFDKI-GTRLASGSKDTDIIVWDL-VGEEGL 142 (888)
T ss_pred ceEEEEecCceEEeecc-------------CCCceeeeecccccceEEEEEccc-CceEeecCCCccEEEEEe-ccceee
Confidence 33345556777777633 233567899999999999999999 999999999999999999 455566
Q ss_pred EEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeC---------------------------------
Q 007411 351 RTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST--------------------------------- 397 (604)
Q Consensus 351 ~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~--------------------------------- 397 (604)
..+.||...|+..-|..+.++++++|.|+.|++||+++..|..+.-.
T Consensus 143 ~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~ 222 (888)
T KOG0306|consen 143 FRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFED 222 (888)
T ss_pred EEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeeccc
Confidence 77889999999988888788888999999999998875433221000
Q ss_pred --------------------------------------------------------------------------------
Q 007411 398 -------------------------------------------------------------------------------- 397 (604)
Q Consensus 398 -------------------------------------------------------------------------------- 397 (604)
T Consensus 223 D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~ 302 (888)
T KOG0306|consen 223 DEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDD 302 (888)
T ss_pred ccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccc
Confidence
Q ss_pred -----------------------------CCcc-----------eEEEEccCCC--------------------------
Q 007411 398 -----------------------------GKIP-----------YVVKLNPDDD-------------------------- 411 (604)
Q Consensus 398 -----------------------------~~~~-----------~~~~~~~~~~-------------------------- 411 (604)
++.. ...++.....
T Consensus 303 v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS 382 (888)
T KOG0306|consen 303 VEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVS 382 (888)
T ss_pred hhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEee
Confidence 0000 0000000000
Q ss_pred CCcEEEEEEcCCeEEEEeCCCCceEE----------------------------------------EEcCcCCceeEEEE
Q 007411 412 KQNILLAGMSDKKIVQWDMNTKEITQ----------------------------------------EYDQHLGAVNTITF 451 (604)
Q Consensus 412 ~~~~lvsg~~dg~I~iwD~~s~~~~~----------------------------------------~~~~h~~~V~~i~~ 451 (604)
..+.++..+..+.|.+|+..+.++++ +++.|.+.|.+++.
T Consensus 383 ~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~ 462 (888)
T KOG0306|consen 383 SDSILLASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISL 462 (888)
T ss_pred cCceeeeecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeee
Confidence 01223334445666666666554443 34469999999999
Q ss_pred eCCCCEEEEEeCCCcEEEEECCCC-----eEEEEee------cCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCcee
Q 007411 452 VDSNRRFVTSSDDKSLRVWEFGIP-----VVIKYIS------EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQ 520 (604)
Q Consensus 452 sp~~~~l~sgs~Dg~I~iwdl~~~-----~~~~~~~------~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~ 520 (604)
+|++..+++||.|.+|++||+.-. ...+.+. ......|.|+.++|||++|+++-.|++|.||-+.+-.
T Consensus 463 ~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlK- 541 (888)
T KOG0306|consen 463 SPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLK- 541 (888)
T ss_pred cCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEeccee-
Confidence 999999999999999999997421 1111111 1245679999999999999999999999999987743
Q ss_pred ecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcE
Q 007411 521 LNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLI 600 (604)
Q Consensus 521 ~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I 600 (604)
-.-.+.|| .-+|.++.+|||++++++|+.|.+|++|-++-|.|-+++-+|.+.|.++.|.| ...++.|||.||.|
T Consensus 542 --FflsLYGH--kLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P-~~~~FFt~gKD~kv 616 (888)
T KOG0306|consen 542 --FFLSLYGH--KLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLP-KTHLFFTCGKDGKV 616 (888)
T ss_pred --eeeeeccc--ccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcc-cceeEEEecCcceE
Confidence 33567788 56799999999999999999999999999999999999999999999999999 78899999999999
Q ss_pred EEeC
Q 007411 601 KYWD 604 (604)
Q Consensus 601 ~vWD 604 (604)
+.||
T Consensus 617 KqWD 620 (888)
T KOG0306|consen 617 KQWD 620 (888)
T ss_pred Eeec
Confidence 9997
No 39
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.7e-29 Score=257.20 Aligned_cols=286 Identities=20% Similarity=0.351 Sum_probs=256.3
Q ss_pred eeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEE
Q 007411 305 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYW 384 (604)
Q Consensus 305 ~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vW 384 (604)
..+++..|+..|.|+.|+|. ..+++++-.+|.|.||+. ++...++.+.-..-+|++..|-..-+++++|+.|..|+||
T Consensus 5 ~krk~~~rSdRVKsVd~HPt-ePw~la~LynG~V~IWny-etqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVf 82 (794)
T KOG0276|consen 5 FKRKFQSRSDRVKSVDFHPT-EPWILAALYNGDVQIWNY-ETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVF 82 (794)
T ss_pred hhhHhhccCCceeeeecCCC-CceEEEeeecCeeEEEec-ccceeeeeeeecccchhhheeeeccceEEEecCCceEEEE
Confidence 44566779999999999999 899999999999999999 7888999999899999999999999999999999999999
Q ss_pred ECCCCcEEEEeeCC-CcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCC-ceEEEEcCcCCceeEEEEeC-CCCEEEEE
Q 007411 385 DTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITFVD-SNRRFVTS 461 (604)
Q Consensus 385 D~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~-~~~~~~~~h~~~V~~i~~sp-~~~~l~sg 461 (604)
+.++++.+..|..+ ..+.++..+|.. .++++++.|-.|++||.... .+.+++.+|..-|.+++|+| |.+.|+++
T Consensus 83 nynt~ekV~~FeAH~DyIR~iavHPt~---P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~ 159 (794)
T KOG0276|consen 83 NYNTGEKVKTFEAHSDYIRSIAVHPTL---PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASA 159 (794)
T ss_pred ecccceeeEEeeccccceeeeeecCCC---CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeee
Confidence 99999999999764 446678888754 68999999999999999865 78899999999999999998 46789999
Q ss_pred eCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCC--CEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEE
Q 007411 462 SDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNT--NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQV 539 (604)
Q Consensus 462 s~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g--~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l 539 (604)
|-|++|+||.+..+.+..++. +|...|.|+.+-+.| .+|++|+.|..|+|||..+..++ .++.||. ..|..+
T Consensus 160 sLDrTVKVWslgs~~~nfTl~-gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV---~TLeGHt--~Nvs~v 233 (794)
T KOG0276|consen 160 SLDRTVKVWSLGSPHPNFTLE-GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCV---QTLEGHT--NNVSFV 233 (794)
T ss_pred eccccEEEEEcCCCCCceeee-ccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHH---HHhhccc--ccceEE
Confidence 999999999999999988886 799999999998855 69999999999999999987665 6677884 557889
Q ss_pred EEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEE
Q 007411 540 NFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKY 602 (604)
Q Consensus 540 ~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~v 602 (604)
.|+|.-.+|++|+.||+++||+..|-++..++.-.-..|++++-.+ +...++.|.+.|.|.|
T Consensus 234 ~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k-~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 234 FFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHK-GDGKIAVGFDEGSVTV 295 (794)
T ss_pred EecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecC-CCCeEEEeccCCcEEE
Confidence 9999999999999999999999999999999988888999999998 6667888888887754
No 40
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=6.9e-29 Score=231.71 Aligned_cols=283 Identities=22% Similarity=0.335 Sum_probs=245.2
Q ss_pred EEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeee--EEecCCCCceeeEEEcc-CCCEEEEEECCCcEEE
Q 007411 307 HTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCM--RTYMGHSKAVRDISFCN-DGTKFLTASYDKNIKY 383 (604)
Q Consensus 307 ~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~--~~~~~h~~~V~~l~fsp-dg~~L~s~s~Dg~I~v 383 (604)
+.+++|...|.+|+|+-+ |..|++|+.|+++.+|++.. .+.. ..+.+|.+.|-.++|+| ...+|++++.|.+|++
T Consensus 14 r~~~~~~~~v~Sv~wn~~-g~~lasgs~dktv~v~n~e~-~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~ 91 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCD-GTKLASGSFDKTVSVWNLER-DRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRI 91 (313)
T ss_pred HHhhhhhhcceEEEEccc-CceeeecccCCceEEEEecc-hhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEE
Confidence 567899999999999999 99999999999999999943 3322 34678999999999998 6779999999999999
Q ss_pred EECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeC
Q 007411 384 WDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD 463 (604)
Q Consensus 384 WD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~ 463 (604)
||++.++++..+........+.+.|++ .+++++..|..|.+.|.++.+.+...+ ..-.++-++|+.++.+|+....
T Consensus 92 wd~r~~k~~~~i~~~~eni~i~wsp~g---~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~G 167 (313)
T KOG1407|consen 92 WDIRSGKCTARIETKGENINITWSPDG---EYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNG 167 (313)
T ss_pred EEeccCcEEEEeeccCcceEEEEcCCC---CEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecC
Confidence 999999999999988888889999876 689999999999999999988777664 5567888999988889888888
Q ss_pred CCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcC
Q 007411 464 DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP 543 (604)
Q Consensus 464 Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp 543 (604)
.|.|.|..+...+++..+. .|.....||.|+|+|++||+|+.|..+.+||+..--+...+.. + .-+|..+.||.
T Consensus 168 lG~v~ILsypsLkpv~si~-AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isR---l--dwpVRTlSFS~ 241 (313)
T KOG1407|consen 168 LGCVEILSYPSLKPVQSIK-AHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISR---L--DWPVRTLSFSH 241 (313)
T ss_pred CceEEEEeccccccccccc-cCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeecc---c--cCceEEEEecc
Confidence 8999999999888888875 5888899999999999999999999999999976544433333 3 45688899999
Q ss_pred CCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCC---------CcEEEe
Q 007411 544 DGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWD---------GLIKYW 603 (604)
Q Consensus 544 dg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~D---------G~I~vW 603 (604)
||++||+|+.|..|-|=++.+|..+..++ +.++...|+|+| ...+||-++.| |.|++|
T Consensus 242 dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHP-k~~LLAyA~ddk~~d~~reag~vKiF 308 (313)
T KOG1407|consen 242 DGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHP-KRPLLAYACDDKDGDSNREAGTVKIF 308 (313)
T ss_pred CcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecC-CCceeeEEecCCCCccccccceeEEe
Confidence 99999999999999999999999999998 678899999999 67788877764 566665
No 41
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=3.6e-30 Score=253.73 Aligned_cols=295 Identities=20% Similarity=0.355 Sum_probs=248.4
Q ss_pred CcccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCe--eeEEecCCCCceeeEEEccCCCEEEEE
Q 007411 298 HCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGK--CMRTYMGHSKAVRDISFCNDGTKFLTA 375 (604)
Q Consensus 298 ~~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~--~~~~~~~h~~~V~~l~fspdg~~L~s~ 375 (604)
...+|.+....+..|.+.|..+.|-++ ...|++|+.|..|++|++ ...+ .+.++.+..++|+++.|.+++.+++++
T Consensus 160 ~~~lpS~~~~~ld~h~gev~~v~~l~~-sdtlatgg~Dr~Ik~W~v-~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAa 237 (459)
T KOG0288|consen 160 EDTLPSRALFVLDAHEGEVHDVEFLRN-SDTLATGGSDRIIKLWNV-LGEKSELISTLAGSLGNITSIDFDSDNKHVIAA 237 (459)
T ss_pred hcccchhhhhhhhccccccceeEEccC-cchhhhcchhhhhhhhhc-ccchhhhhhhhhccCCCcceeeecCCCceEEee
Confidence 345788889999999999999999998 889999999999999999 3444 677888899999999999999999999
Q ss_pred ECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCC
Q 007411 376 SYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSN 455 (604)
Q Consensus 376 s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~ 455 (604)
+.|+.+++|++...+...++.. |...+.+....-.. ..+++|+.|.+|++||+....+..++. ....++.|... .
T Consensus 238 s~d~~~r~Wnvd~~r~~~TLsG-HtdkVt~ak~~~~~-~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~ 312 (459)
T KOG0288|consen 238 SNDKNLRLWNVDSLRLRHTLSG-HTDKVTAAKFKLSH-SRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--I 312 (459)
T ss_pred cCCCceeeeeccchhhhhhhcc-cccceeeehhhccc-cceeeccccchhhhhhhhhhheecccc-ccccccceEec--c
Confidence 9999999999999999999877 44444444333222 239999999999999999988777664 44566677765 5
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccc
Q 007411 456 RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGY 535 (604)
Q Consensus 456 ~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 535 (604)
..+++|..|+.|++||++...+...+. ..+.|+++..++++..|.+++.|.++.++|+++......... .+...+.-
T Consensus 313 ~~~~SgH~DkkvRfwD~Rs~~~~~sv~--~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA-~g~k~asD 389 (459)
T KOG0288|consen 313 SDVISGHFDKKVRFWDIRSADKTRSVP--LGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSA-EGFKCASD 389 (459)
T ss_pred eeeeecccccceEEEeccCCceeeEee--cCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeec-cccccccc
Confidence 678899999999999999998888774 556999999999999999999999999999998655433322 22223445
Q ss_pred eEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCC--cEEEEEEecCCCCEEEEEeCCCcEEEe
Q 007411 536 ACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEG--VCIGCEWHPLEQSKVATCGWDGLIKYW 603 (604)
Q Consensus 536 v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~--~V~~v~~sp~~~~~l~tgg~DG~I~vW 603 (604)
.+.+.|||++.|+++|+.||.|+||++.++++...+..... .|++++|+| .++.|++++.++.+.+|
T Consensus 390 wtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~-sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 390 WTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNP-SGSGLLSADKQKAVTLW 458 (459)
T ss_pred cceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcC-CCchhhcccCCcceEec
Confidence 77899999999999999999999999999999999986554 499999999 78899999999999999
No 42
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=9.6e-30 Score=246.35 Aligned_cols=247 Identities=21% Similarity=0.363 Sum_probs=219.6
Q ss_pred CCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCC-CcceEEEEccCCCCCcEEEEEEcCCe
Q 007411 346 SGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKK 424 (604)
Q Consensus 346 ~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~ 424 (604)
.-+..+.+.+|.+.|+|+++.|.+.+|++|+.|++|+|||+.+|+...++..+ ....-++++.. ..++++++.|+.
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~r---HpYlFs~gedk~ 216 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKR---HPYLFSAGEDKQ 216 (460)
T ss_pred cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeeccc---CceEEEecCCCe
Confidence 34566788999999999999999999999999999999999999999888643 33445555553 368999999999
Q ss_pred EEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEE
Q 007411 425 IVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQ 504 (604)
Q Consensus 425 I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~ 504 (604)
|+.||+...+.++.|.+|.+.|.|+..+|.-..|++|+.|.+++|||+++...+..+. +|..+|.++.+.|-...+++|
T Consensus 217 VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~-GH~~~V~~V~~~~~dpqvit~ 295 (460)
T KOG0285|consen 217 VKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLS-GHTNPVASVMCQPTDPQVITG 295 (460)
T ss_pred eEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEec-CCCCcceeEEeecCCCceEEe
Confidence 9999999999999999999999999999999999999999999999999999888875 699999999999999999999
Q ss_pred EcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEe
Q 007411 505 SLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWH 584 (604)
Q Consensus 505 s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~s 584 (604)
|.|++|++||++.+.... .+..| ...+.+++.+|....+++++.| .|+-|++..|..+..+.+|...|++++..
T Consensus 296 S~D~tvrlWDl~agkt~~---tlt~h--kksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~n 369 (460)
T KOG0285|consen 296 SHDSTVRLWDLRAGKTMI---TLTHH--KKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVN 369 (460)
T ss_pred cCCceEEEeeeccCceeE---eeecc--cceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeec
Confidence 999999999999876553 33334 4568889999999999999877 69999999999999999999999999988
Q ss_pred cCCCCEEEEEeCCCcEEEeC
Q 007411 585 PLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 585 p~~~~~l~tgg~DG~I~vWD 604 (604)
. + .++++|+..|.|.+||
T Consensus 370 s-D-~v~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 370 S-D-GVLVSGGDNGSIMFWD 387 (460)
T ss_pred c-C-ceEEEcCCceEEEEEe
Confidence 6 3 4899999999999997
No 43
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.7e-29 Score=245.46 Aligned_cols=274 Identities=19% Similarity=0.388 Sum_probs=236.0
Q ss_pred cCcceeeccCccccccceeecCCCccccCCCCcccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCC
Q 007411 267 EDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNS 346 (604)
Q Consensus 267 ~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~ 346 (604)
.+.-.+......|+..+.| .+....+.+.++||++.|..|+|+.. |.+|++++.|-.+++||....
T Consensus 117 hp~~~~v~~as~d~tikv~-------------D~~tg~~e~~LrGHt~sv~di~~~a~-Gk~l~tcSsDl~~~LWd~~~~ 182 (406)
T KOG0295|consen 117 HPSEALVVSASEDATIKVF-------------DTETGELERSLRGHTDSVFDISFDAS-GKYLATCSSDLSAKLWDFDTF 182 (406)
T ss_pred ccCceEEEEecCCceEEEE-------------EccchhhhhhhhccccceeEEEEecC-ccEEEecCCccchhheeHHHH
Confidence 3333333444455555555 45566778999999999999999998 999999999999999999655
Q ss_pred CeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEE
Q 007411 347 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIV 426 (604)
Q Consensus 347 ~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~ 426 (604)
.++++.+.+|...|.+++|-|.|.+|++++.|.+|+.|++.+|-++.++..+.. .+-.+.+.. ++.++++++.|.+|+
T Consensus 183 ~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~e-wvr~v~v~~-DGti~As~s~dqtl~ 260 (406)
T KOG0295|consen 183 FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSE-WVRMVRVNQ-DGTIIASCSNDQTLR 260 (406)
T ss_pred HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchH-hEEEEEecC-CeeEEEecCCCceEE
Confidence 788999999999999999999999999999999999999999999999976544 444444433 348999999999999
Q ss_pred EEeCCCCceEEEEcCcCCceeEEEEeCC---------------CCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccE
Q 007411 427 QWDMNTKEITQEYDQHLGAVNTITFVDS---------------NRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPS 491 (604)
Q Consensus 427 iwD~~s~~~~~~~~~h~~~V~~i~~sp~---------------~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~ 491 (604)
+|-+.++++...+..|..+|-|++|.|. ++++++++.|++|++||+.++.++.++. +|..-|..
T Consensus 261 vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~-ghdnwVr~ 339 (406)
T KOG0295|consen 261 VWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLV-GHDNWVRG 339 (406)
T ss_pred EEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEe-cccceeee
Confidence 9999999999999999999999999763 3589999999999999999999999886 69999999
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeC
Q 007411 492 ISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 562 (604)
Q Consensus 492 l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~ 562 (604)
++|+|.|+||+++..|+++++||+++..++... ..| ...++++.|+.+-.++++|+-|..+++|..
T Consensus 340 ~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~---~ah--~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 340 VAFSPGGKYILSCADDKTLRVWDLKNLQCMKTL---EAH--EHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eEEcCCCeEEEEEecCCcEEEEEeccceeeecc---CCC--cceeEEEecCCCCceEEeccccceeeeeec
Confidence 999999999999999999999999998776443 344 567889999999999999999999999974
No 44
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=6.2e-28 Score=244.22 Aligned_cols=292 Identities=16% Similarity=0.305 Sum_probs=242.5
Q ss_pred cceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCe-eeEEecCCCCceeeEEEccCCCEEEEEECC---
Q 007411 303 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGK-CMRTYMGHSKAVRDISFCNDGTKFLTASYD--- 378 (604)
Q Consensus 303 ~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~-~~~~~~~h~~~V~~l~fspdg~~L~s~s~D--- 378 (604)
...+..+.+|...++-.+|+|. |.++++|...|+|+|||...... +..+++...++|.+|+|+.++++|+..+..
T Consensus 49 ~~~~~iYtEH~~~vtVAkySPs-G~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrer 127 (603)
T KOG0318|consen 49 PASVDIYTEHAHQVTVAKYSPS-GFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRER 127 (603)
T ss_pred ccceeeeccccceeEEEEeCCC-ceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccc
Confidence 3446788999999999999999 99999999999999999965343 445677788999999999999999988763
Q ss_pred -CcEEEEECCCCcEEEEeeCCC-cceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCC
Q 007411 379 -KNIKYWDTETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNR 456 (604)
Q Consensus 379 -g~I~vWD~~t~~~i~~~~~~~-~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~ 456 (604)
|.+.+|| +|..+..+..+. ....+.+.| .....+++|+.|+.|.+|+-.--+...++..|..-|+|+.|+|+|.
T Consensus 128 fg~~F~~D--SG~SvGei~GhSr~ins~~~Kp--sRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~ 203 (603)
T KOG0318|consen 128 FGHVFLWD--SGNSVGEITGHSRRINSVDFKP--SRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGS 203 (603)
T ss_pred eeEEEEec--CCCccceeeccceeEeeeeccC--CCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCC
Confidence 3455555 566666664432 334455555 4447899999999999999877777888889999999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEee--cCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCccccc
Q 007411 457 RFVTSSDDKSLRVWEFGIPVVIKYIS--EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAG 534 (604)
Q Consensus 457 ~l~sgs~Dg~I~iwdl~~~~~~~~~~--~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 534 (604)
+|++.+.||.|.+||-.++..+..+. .+|.+.|.+++|+||+..|++++.|.+++|||+.+......... .... ..
T Consensus 204 ~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~-~~~v-~d 281 (603)
T KOG0318|consen 204 RFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPM-GSTV-ED 281 (603)
T ss_pred eEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeec-CCch-hc
Confidence 99999999999999999999888886 47999999999999999999999999999999988765543322 2221 22
Q ss_pred ceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007411 535 YACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 535 ~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
....+-|- ...|++.+.+|.|.+++...+.++..+.+|...|+++..+| ++.+|++|+.||.|.-||
T Consensus 282 qqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~-d~~~i~SgsyDG~I~~W~ 348 (603)
T KOG0318|consen 282 QQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP-DGKTIYSGSYDGHINSWD 348 (603)
T ss_pred eEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC-CCCEEEeeccCceEEEEe
Confidence 23334554 56889999999999999999999999999999999999999 669999999999999996
No 45
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=9.9e-29 Score=249.17 Aligned_cols=298 Identities=20% Similarity=0.349 Sum_probs=233.9
Q ss_pred ccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCee---eEEec-CCCCceeeEEEccCCCEEEEE
Q 007411 300 YIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKC---MRTYM-GHSKAVRDISFCNDGTKFLTA 375 (604)
Q Consensus 300 ~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~---~~~~~-~h~~~V~~l~fspdg~~L~s~ 375 (604)
.+|...-..+++|+..|+++++.|. |..|+|||.|-+|++||+..-... .+.+. .....|+++.|++.|..|++.
T Consensus 154 ~IP~shEi~l~hgtk~Vsal~~Dp~-GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvv 232 (641)
T KOG0772|consen 154 LIPGSHEIQLKHGTKIVSALAVDPS-GARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVV 232 (641)
T ss_pred cCCccceEeccCCceEEEEeeecCC-CceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEE
Confidence 4666777889999999999999999 999999999999999999432222 22332 346679999999999999999
Q ss_pred ECCCcEEEEECCCCcEEEEee-----------CCCcc--eEEEEccCCCCCcEEEEEEcCCeEEEEeCCCC-ceEEEEc-
Q 007411 376 SYDKNIKYWDTETGQVIRTFS-----------TGKIP--YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYD- 440 (604)
Q Consensus 376 s~Dg~I~vWD~~t~~~i~~~~-----------~~~~~--~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~-~~~~~~~- 440 (604)
+....++|+|-.....+...+ .+|.. .+.+|+|. ....|++++.||++++||+... +..+.+.
T Consensus 233 sg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~--~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~ 310 (641)
T KOG0772|consen 233 SGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPD--NKEEFLTCSYDGTLRIWDVNNTKSQLQVIKT 310 (641)
T ss_pred ecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccC--cccceEEecCCCcEEEEecCCchhheeEEee
Confidence 999999999976554443332 23333 35556664 4578999999999999999764 3334432
Q ss_pred ----CcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCC--eEEEEeecCCCC--cccEEEEcCCCCEEEEEEcCCeEEE
Q 007411 441 ----QHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP--VVIKYISEPHMH--SMPSISLHPNTNWLAAQSLDNQILI 512 (604)
Q Consensus 441 ----~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~--~~~~~~~~~~~~--~v~~l~~sp~g~~l~s~s~Dg~I~i 512 (604)
+..-++++++|++++++|++|+.||+|.+|+.+.. .+...+...|.. .|+||+|+++|++|++-+.|+++++
T Consensus 311 k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKv 390 (641)
T KOG0772|consen 311 KPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKV 390 (641)
T ss_pred ccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceee
Confidence 23346899999999999999999999999998643 334445556766 8999999999999999999999999
Q ss_pred EEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcC------CCcEEEEeCCCCeeEEEEecCCCcEEEEEEecC
Q 007411 513 YSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG------EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPL 586 (604)
Q Consensus 513 wd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~------dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~ 586 (604)
||++..... +....+....-..+.++|||+.++|++|.+ .|.+++||..+...+..+......|..|.|||
T Consensus 391 WDLrq~kkp--L~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Whp- 467 (641)
T KOG0772|consen 391 WDLRQFKKP--LNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHP- 467 (641)
T ss_pred eeccccccc--hhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecc-
Confidence 999875432 233334333455667999999999999864 57899999999999999988888999999999
Q ss_pred CCCEEEEEeCCCcEEEe
Q 007411 587 EQSKVATCGWDGLIKYW 603 (604)
Q Consensus 587 ~~~~l~tgg~DG~I~vW 603 (604)
.-+.|+.|+.||+++||
T Consensus 468 kLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 468 KLNQIFAGSGDGTAHVY 484 (641)
T ss_pred hhhheeeecCCCceEEE
Confidence 55567777779999886
No 46
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=3.4e-29 Score=238.42 Aligned_cols=295 Identities=20% Similarity=0.329 Sum_probs=245.6
Q ss_pred ceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCC-----------------CCeeeEEecCCCCceeeEEEc
Q 007411 304 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN-----------------SGKCMRTYMGHSKAVRDISFC 366 (604)
Q Consensus 304 ~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~-----------------~~~~~~~~~~h~~~V~~l~fs 366 (604)
-....+..|..++.+.+|+|+ |.++++|+.|..|+|.|+.. ....++++..|...|+++.|+
T Consensus 103 yEt~ylt~HK~~cR~aafs~D-G~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FH 181 (430)
T KOG0640|consen 103 YETKYLTSHKSPCRAAAFSPD-GSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFH 181 (430)
T ss_pred cceEEEeecccceeeeeeCCC-CcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeec
Confidence 344567899999999999999 99999999999999999841 124688999999999999999
Q ss_pred cCCCEEEEEECCCcEEEEECCCCcEE---EEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEE---c
Q 007411 367 NDGTKFLTASYDKNIKYWDTETGQVI---RTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY---D 440 (604)
Q Consensus 367 pdg~~L~s~s~Dg~I~vWD~~t~~~i---~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~---~ 440 (604)
|....|++++.|++|+++|+...... +.|...+...++.|+|.+ .++++|.....+++||+++-++...- .
T Consensus 182 Pre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsG---efllvgTdHp~~rlYdv~T~QcfvsanPd~ 258 (430)
T KOG0640|consen 182 PRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSG---EFLLVGTDHPTLRLYDVNTYQCFVSANPDD 258 (430)
T ss_pred chhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCC---ceEEEecCCCceeEEeccceeEeeecCccc
Confidence 99999999999999999999765433 345556777888888866 58999999999999999988765543 4
Q ss_pred CcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCC-cccEEEEcCCCCEEEEEEcCCeEEEEEcCCce
Q 007411 441 QHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMH-SMPSISLHPNTNWLAAQSLDNQILIYSTRERF 519 (604)
Q Consensus 441 ~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~-~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~ 519 (604)
+|.+.|+++.+++.+++.+++|.||.|++||--+.+++..+...|.+ .|.+..|..+++++++.+.|..+++|.+.++.
T Consensus 259 qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R 338 (430)
T KOG0640|consen 259 QHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGR 338 (430)
T ss_pred ccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCc
Confidence 69999999999999999999999999999999999999998877765 48889999999999999999999999999887
Q ss_pred eecccccccCcccccceEEEEEcCCCCEEEEEcC-CCcEEEEeCCCCeeEEEEe-cCCCcEEEEEEecCCCCEEEEEeCC
Q 007411 520 QLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG-EGKCWFWDWKSCKVFRTLK-CHEGVCIGCEWHPLEQSKVATCGWD 597 (604)
Q Consensus 520 ~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~-dG~I~iwd~~t~~~~~~l~-~h~~~V~~v~~sp~~~~~l~tgg~D 597 (604)
.+.....-........-+...|+....|++.-+. .+.++-||.++...+..+. +|.+.|..+.-+| ...-++||+.|
T Consensus 339 ~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP-~~p~FmTcsdD 417 (430)
T KOG0640|consen 339 MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSP-VEPAFMTCSDD 417 (430)
T ss_pred eEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCC-CCCceeeeccc
Confidence 6644322110011122334567777788877664 5789999999987766554 7999999999999 67789999999
Q ss_pred CcEEEe
Q 007411 598 GLIKYW 603 (604)
Q Consensus 598 G~I~vW 603 (604)
-.+++|
T Consensus 418 ~raRFW 423 (430)
T KOG0640|consen 418 FRARFW 423 (430)
T ss_pred ceeeee
Confidence 999999
No 47
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.5e-29 Score=257.39 Aligned_cols=246 Identities=22% Similarity=0.434 Sum_probs=221.5
Q ss_pred eEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcc-eEEEEccCCCCCcEEEEEEcCCeEEEE
Q 007411 350 MRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP-YVVKLNPDDDKQNILLAGMSDKKIVQW 428 (604)
Q Consensus 350 ~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~-~~~~~~~~~~~~~~lvsg~~dg~I~iw 428 (604)
.+++..|+..|.++.|+|....++++-+.|.|.||+.++...++.|.....+ ....|.. ..+.+++|+.|..|++|
T Consensus 6 krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfia---RknWiv~GsDD~~IrVf 82 (794)
T KOG0276|consen 6 KRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIA---RKNWIVTGSDDMQIRVF 82 (794)
T ss_pred hhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeee---ccceEEEecCCceEEEE
Confidence 3456679999999999999999999999999999999999999999875544 3444544 33789999999999999
Q ss_pred eCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCC-CCEEEEEEcC
Q 007411 429 DMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPN-TNWLAAQSLD 507 (604)
Q Consensus 429 D~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~-g~~l~s~s~D 507 (604)
+..+++.+..+..|..-|.||+.+|...+++++|+|-+|++||....-...+...+|.+-|.+++|.|. .+.|+++|.|
T Consensus 83 nynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLD 162 (794)
T KOG0276|consen 83 NYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLD 162 (794)
T ss_pred ecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeecc
Confidence 999999999999999999999999999999999999999999999998888888899999999999995 6899999999
Q ss_pred CeEEEEEcCCceeecccccccCcccccceEEEEEcCCC--CEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEec
Q 007411 508 NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDG--RFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHP 585 (604)
Q Consensus 508 g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg--~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp 585 (604)
++|++|.+.+.... .++.+| ...|.++++-+.| .||++|+.|..|+|||.++..|++++.+|...|..+.|+|
T Consensus 163 rTVKVWslgs~~~n---fTl~gH--ekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp 237 (794)
T KOG0276|consen 163 RTVKVWSLGSPHPN---FTLEGH--EKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHP 237 (794)
T ss_pred ccEEEEEcCCCCCc---eeeecc--ccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecC
Confidence 99999999775443 556777 5668889998744 6999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEeC
Q 007411 586 LEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 586 ~~~~~l~tgg~DG~I~vWD 604 (604)
.-.+++|||.||++|||+
T Consensus 238 -~lpiiisgsEDGTvriWh 255 (794)
T KOG0276|consen 238 -ELPIIISGSEDGTVRIWN 255 (794)
T ss_pred -CCcEEEEecCCccEEEec
Confidence 788999999999999995
No 48
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.96 E-value=8.5e-30 Score=250.71 Aligned_cols=254 Identities=19% Similarity=0.321 Sum_probs=214.6
Q ss_pred CcccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCC-CCceeeEEEccCCCEEEEEE
Q 007411 298 HCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGH-SKAVRDISFCNDGTKFLTAS 376 (604)
Q Consensus 298 ~~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h-~~~V~~l~fspdg~~L~s~s 376 (604)
|+-.....-..++.|..+|.++.|+++ +.+++||+.+|.|++|+. ....+..+..| ...|++++|+|+...|++|+
T Consensus 123 WNg~~fnFEtilQaHDs~Vr~m~ws~~-g~wmiSgD~gG~iKyWqp--nmnnVk~~~ahh~eaIRdlafSpnDskF~t~S 199 (464)
T KOG0284|consen 123 WNGTSFNFETILQAHDSPVRTMKWSHN-GTWMISGDKGGMIKYWQP--NMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCS 199 (464)
T ss_pred ecCceeeHHHHhhhhcccceeEEEccC-CCEEEEcCCCceEEeccc--chhhhHHhhHhhhhhhheeccCCCCceeEEec
Confidence 333333444556799999999999999 999999999999999997 34445555555 49999999999999999999
Q ss_pred CCCcEEEEECCCCcEEEEeeCC-CcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCC
Q 007411 377 YDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSN 455 (604)
Q Consensus 377 ~Dg~I~vWD~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~ 455 (604)
.||+|+|||....+..+.+..+ -.+.++.|+|.. .++++|+.|..|++||.+++.++.++.+|...|..+.|++++
T Consensus 200 dDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~k---gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~ 276 (464)
T KOG0284|consen 200 DDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTK---GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNG 276 (464)
T ss_pred CCCeEEEEeccCCchhheeccCCCCcceeccCCcc---ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCC
Confidence 9999999999988877777543 356688888754 689999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCC-CCEEEEEEcCCeEEEEEcCCceeecccccccCccccc
Q 007411 456 RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPN-TNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAG 534 (604)
Q Consensus 456 ~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~-g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 534 (604)
++|+++|.|..++++|+++.+.+..+. +|...+++++|+|- ..+|.+|+.||.|..|.+.....+. ..++.+..
T Consensus 277 N~Llt~skD~~~kv~DiR~mkEl~~~r-~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~----~i~~AHd~ 351 (464)
T KOG0284|consen 277 NWLLTGSKDQSCKVFDIRTMKELFTYR-GHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLG----EIPPAHDG 351 (464)
T ss_pred CeeEEccCCceEEEEehhHhHHHHHhh-cchhhheeeccccccccceeeccCCCceEEEecccccccc----CCCccccc
Confidence 999999999999999999766665553 69999999999995 5789999999999999987433332 12233367
Q ss_pred ceEEEEEcCCCCEEEEEcCCCcEEEEeC
Q 007411 535 YACQVNFSPDGRFVMSGDGEGKCWFWDW 562 (604)
Q Consensus 535 ~v~~l~~spdg~~L~sgs~dG~I~iwd~ 562 (604)
.|.+++|+|-|.+|++|+.|.++++|.-
T Consensus 352 ~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 352 EIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred ceeeeeccccceeEeecCCCcceeeecc
Confidence 8999999999999999999999999974
No 49
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.5e-28 Score=226.18 Aligned_cols=243 Identities=23% Similarity=0.406 Sum_probs=207.2
Q ss_pred eeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCC-cceEEEEccCCCCCcEEEEEEcCCeEE
Q 007411 348 KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIV 426 (604)
Q Consensus 348 ~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~-~~~~~~~~~~~~~~~~lvsg~~dg~I~ 426 (604)
+.++.+.+|.++|+.+.|+-+|++.++|+.|++|++|+...|.+++++..+. .+.-.....++ ..|++|+.|..|.
T Consensus 8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dn---skf~s~GgDk~v~ 84 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDN---SKFASCGGDKAVQ 84 (307)
T ss_pred hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccc---cccccCCCCceEE
Confidence 3556788999999999999999999999999999999999999999997643 33444444443 4599999999999
Q ss_pred EEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCC--eEEEEeecCCCCcccEEEEcCCCCEEEEE
Q 007411 427 QWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP--VVIKYISEPHMHSMPSISLHPNTNWLAAQ 504 (604)
Q Consensus 427 iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~--~~~~~~~~~~~~~v~~l~~sp~g~~l~s~ 504 (604)
+||+.+|+.++.+.+|.+.|+.+.|+.+...+++|+-|.++++||.+.. ++++.+. .....|.++.+. +..|++|
T Consensus 85 vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQild-ea~D~V~Si~v~--~heIvaG 161 (307)
T KOG0316|consen 85 VWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILD-EAKDGVSSIDVA--EHEIVAG 161 (307)
T ss_pred EEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhh-hhcCceeEEEec--ccEEEee
Confidence 9999999999999999999999999999999999999999999999764 4555554 356678887774 6789999
Q ss_pred EcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcE--EEEE
Q 007411 505 SLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVC--IGCE 582 (604)
Q Consensus 505 s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V--~~v~ 582 (604)
+.||+++.||++.+..... + ...+|++++|+++|+.+++++-+++|++.|-.+|+++..+++|...- ..++
T Consensus 162 S~DGtvRtydiR~G~l~sD---y----~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~ 234 (307)
T KOG0316|consen 162 SVDGTVRTYDIRKGTLSSD---Y----FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCC 234 (307)
T ss_pred ccCCcEEEEEeecceeehh---h----cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeee
Confidence 9999999999998764422 2 24578899999999999999999999999999999999999998643 4556
Q ss_pred EecCCCCEEEEEeCCCcEEEeC
Q 007411 583 WHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 583 ~sp~~~~~l~tgg~DG~I~vWD 604 (604)
++. ....+++|+.||.|.+||
T Consensus 235 l~q-sdthV~sgSEDG~Vy~wd 255 (307)
T KOG0316|consen 235 LNQ-SDTHVFSGSEDGKVYFWD 255 (307)
T ss_pred ecc-cceeEEeccCCceEEEEE
Confidence 665 556899999999999997
No 50
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=8.1e-28 Score=259.81 Aligned_cols=278 Identities=23% Similarity=0.445 Sum_probs=229.1
Q ss_pred cCcceeeccCccccccceeecCCCccccCCCCcccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCC
Q 007411 267 EDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNS 346 (604)
Q Consensus 267 ~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~ 346 (604)
.....+......+..++.|...... + .+++.+.+|...|.+++|+|+ +.++++|+.|++|+|||+...
T Consensus 168 s~~g~~l~~~~~~~~i~~~~~~~~~-------~----~~~~~l~~h~~~v~~~~fs~d-~~~l~s~s~D~tiriwd~~~~ 235 (456)
T KOG0266|consen 168 SPDGRALAAASSDGLIRIWKLEGIK-------S----NLLRELSGHTRGVSDVAFSPD-GSYLLSGSDDKTLRIWDLKDD 235 (456)
T ss_pred cCCCCeEEEccCCCcEEEeeccccc-------c----hhhccccccccceeeeEECCC-CcEEEEecCCceEEEeeccCC
Confidence 3333344555566667776552211 0 466777999999999999999 899999999999999999666
Q ss_pred CeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCc-ceEEEEccCCCCCcEEEEEEcCCeE
Q 007411 347 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKI-PYVVKLNPDDDKQNILLAGMSDKKI 425 (604)
Q Consensus 347 ~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~-~~~~~~~~~~~~~~~lvsg~~dg~I 425 (604)
+.+++++.+|...|++++|+|+|+++++|+.|++|+|||+++++++..+..+.. +..+.+.+++ ++|++++.|+.|
T Consensus 236 ~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~---~~l~s~s~d~~i 312 (456)
T KOG0266|consen 236 GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDG---NLLVSASYDGTI 312 (456)
T ss_pred CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCC---CEEEEcCCCccE
Confidence 799999999999999999999999999999999999999999999999987765 4456666544 789999999999
Q ss_pred EEEeCCCCc--eEEEEcCcCCc--eeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCC--cccEEEEcCCCC
Q 007411 426 VQWDMNTKE--ITQEYDQHLGA--VNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMH--SMPSISLHPNTN 499 (604)
Q Consensus 426 ~iwD~~s~~--~~~~~~~h~~~--V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~--~v~~l~~sp~g~ 499 (604)
++||+.++. ++..+..+... ++++.|+|++.+|++++.|+.+++||+............... .+.+...++.+.
T Consensus 313 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (456)
T KOG0266|consen 313 RVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGK 392 (456)
T ss_pred EEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCC
Confidence 999999998 56677666655 999999999999999999999999999998888777643332 444556678899
Q ss_pred EEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEc--CCCcEEEEeCC
Q 007411 500 WLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD--GEGKCWFWDWK 563 (604)
Q Consensus 500 ~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs--~dG~I~iwd~~ 563 (604)
++++|+.|+.|.+|++.++..+ ..+.+|. ...+..+.++|..+++++++ .|+.|++|...
T Consensus 393 ~i~sg~~d~~v~~~~~~s~~~~---~~l~~h~-~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 393 LIYSGSEDGSVYVWDSSSGGIL---QRLEGHS-KAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred eEEEEeCCceEEEEeCCccchh---hhhcCCC-CCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 9999999999999999875444 4455554 46678899999999999998 78899999753
No 51
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.6e-28 Score=260.60 Aligned_cols=253 Identities=22% Similarity=0.431 Sum_probs=212.4
Q ss_pred ceeEEec-CCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCC-------------------------------------
Q 007411 304 RLVHTWS-GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN------------------------------------- 345 (604)
Q Consensus 304 ~~i~tl~-gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~------------------------------------- 345 (604)
...+.+. .|.+.|.++.|+++ |+|||+||.||.|+||.+.+
T Consensus 257 ~~~Qe~~~ah~gaIw~mKFS~D-GKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~ 335 (712)
T KOG0283|consen 257 TVVQEISNAHKGAIWAMKFSHD-GKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSR 335 (712)
T ss_pred EEeeccccccCCcEEEEEeCCC-CceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccc
Confidence 4455666 89999999999999 99999999999999998743
Q ss_pred ----------------------CCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcceE
Q 007411 346 ----------------------SGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV 403 (604)
Q Consensus 346 ----------------------~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~ 403 (604)
..++++.|.||.+.|.+|.|+.+ ++|++++.|.+|+||++....|++.|.+...++|
T Consensus 336 ~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTc 414 (712)
T KOG0283|consen 336 TSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTC 414 (712)
T ss_pred ccccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEecCCeeEE
Confidence 01244566799999999999965 5899999999999999999999999999999999
Q ss_pred EEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeec
Q 007411 404 VKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISE 483 (604)
Q Consensus 404 ~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~ 483 (604)
+.|+|.++ ++|++|+-||+|+||++...+.+.-...+ .-|++++|.|+|+..++|+.+|.+++|+....+.......
T Consensus 415 VaFnPvDD--ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I 491 (712)
T KOG0283|consen 415 VAFNPVDD--RYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHI 491 (712)
T ss_pred EEecccCC--CcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeE
Confidence 99999776 89999999999999999988877666544 8899999999999999999999999999987765544321
Q ss_pred -------CCCCcccEEEEcCCC-CEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCC
Q 007411 484 -------PHMHSMPSISLHPNT-NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG 555 (604)
Q Consensus 484 -------~~~~~v~~l~~sp~g-~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG 555 (604)
.....|+++.+.|.. ..+++.+.|..|+|||.++...+.. |+|..+...-....|+.||++|++++.|.
T Consensus 492 ~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~K---fKG~~n~~SQ~~Asfs~Dgk~IVs~seDs 568 (712)
T KOG0283|consen 492 RLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHK---FKGFRNTSSQISASFSSDGKHIVSASEDS 568 (712)
T ss_pred eeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhh---hcccccCCcceeeeEccCCCEEEEeecCc
Confidence 112279999999854 4688889999999999987666544 44444444555689999999999999999
Q ss_pred cEEEEeCCC
Q 007411 556 KCWFWDWKS 564 (604)
Q Consensus 556 ~I~iwd~~t 564 (604)
.|++|+...
T Consensus 569 ~VYiW~~~~ 577 (712)
T KOG0283|consen 569 WVYIWKNDS 577 (712)
T ss_pred eEEEEeCCC
Confidence 999999744
No 52
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=3.4e-29 Score=243.16 Aligned_cols=287 Identities=18% Similarity=0.330 Sum_probs=235.9
Q ss_pred cCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCc
Q 007411 301 IPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKN 380 (604)
Q Consensus 301 ~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~ 380 (604)
+.+..+..|.||..+|.|++=+|..-..++||+.||.|+|||+ ....+++++..|.+.|+.|++.. ..+++++.|.+
T Consensus 54 fakPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnl-sqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKt 130 (433)
T KOG0268|consen 54 FAKPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNL-SQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKT 130 (433)
T ss_pred hhccchhhccccccccchhhcCcchhhhhhccccCceEEEEeh-hhhhhhheeecccCceeeEEecc--cceEEecCCcc
Confidence 3445667789999999999999985588999999999999999 78899999999999999999987 67999999999
Q ss_pred EEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCC-EEE
Q 007411 381 IKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNR-RFV 459 (604)
Q Consensus 381 I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~-~l~ 459 (604)
|+.|-++. .++.++.......-+..+.. .+.+++++ -.|.|||..-..+++.+.--...|.++.|+|... .|+
T Consensus 131 vK~wk~~~-~p~~tilg~s~~~gIdh~~~---~~~FaTcG--e~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILa 204 (433)
T KOG0268|consen 131 VKQWKIDG-PPLHTILGKSVYLGIDHHRK---NSVFATCG--EQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILA 204 (433)
T ss_pred eeeeeccC-Ccceeeeccccccccccccc---cccccccC--ceeeecccccCCccceeecCCCceeEEecCCCcchhee
Confidence 99999875 45666654444433333332 24566665 4699999998889999887788999999999754 566
Q ss_pred EEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEE
Q 007411 460 TSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQV 539 (604)
Q Consensus 460 sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l 539 (604)
+|..|++|.+||++...+++.+.. ...-..|+|+|.+-.|++++.|..++.||++.-. .....+.+|. +.|.++
T Consensus 205 s~~sDrsIvLyD~R~~~Pl~KVi~--~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~--~p~~v~~dhv--sAV~dV 278 (433)
T KOG0268|consen 205 SCASDRSIVLYDLRQASPLKKVIL--TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS--RPLNVHKDHV--SAVMDV 278 (433)
T ss_pred eeccCCceEEEecccCCccceeee--eccccceecCccccceeeccccccceehhhhhhc--ccchhhcccc--eeEEEe
Confidence 777999999999999998887753 4456789999988889999999999999998643 3456677884 568999
Q ss_pred EEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEec-CCCcEEEEEEecCCCCEEEEEeCCCcEEEe
Q 007411 540 NFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC-HEGVCIGCEWHPLEQSKVATCGWDGLIKYW 603 (604)
Q Consensus 540 ~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~-h~~~V~~v~~sp~~~~~l~tgg~DG~I~vW 603 (604)
+|||-|+-+++|+.|.+|+||....+.....+.. --..|.++.|+- +..++++||.|+.|++|
T Consensus 279 dfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~-Dskyi~SGSdd~nvRlW 342 (433)
T KOG0268|consen 279 DFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSM-DSKYIISGSDDGNVRLW 342 (433)
T ss_pred ccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEec-cccEEEecCCCcceeee
Confidence 9999999999999999999999887654333221 124689999999 78899999999999999
No 53
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=3.6e-27 Score=254.78 Aligned_cols=277 Identities=24% Similarity=0.420 Sum_probs=235.6
Q ss_pred EEecC-CCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEE-ecCCCCceeeEEEccCCCEEEEEECCCcEEEE
Q 007411 307 HTWSG-HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRT-YMGHSKAVRDISFCNDGTKFLTASYDKNIKYW 384 (604)
Q Consensus 307 ~tl~g-H~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~-~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vW 384 (604)
..+.+ |...|+|..|. ..++++++.|++|++|+. ..+..+.. +.+|.+.|.+++|..-+.+|++|+.|.+++||
T Consensus 201 ~~~~~~~~~~~~~~q~~---~~~~~~~s~~~tl~~~~~-~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvW 276 (537)
T KOG0274|consen 201 KVLLGTDDHVVLCLQLH---DGFFKSGSDDSTLHLWDL-NNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVW 276 (537)
T ss_pred eeecccCcchhhhheee---cCeEEecCCCceeEEeec-ccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeE
Confidence 44444 67789999998 458999999999999999 56776666 99999999999998878899999999999999
Q ss_pred ECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCC
Q 007411 385 DTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDD 464 (604)
Q Consensus 385 D~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~D 464 (604)
|+.+|++...+..+ ...+.++.... .++++|+.|.+|++|++.++..+..+.+|.++|+++..+ +.++++|+.|
T Consensus 277 d~~sg~C~~~l~gh-~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d 350 (537)
T KOG0274|consen 277 DCSTGECTHSLQGH-TSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYD 350 (537)
T ss_pred ecCCCcEEEEecCC-CceEEEEEccC---ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecC
Confidence 99999999999843 33333333222 568889999999999999999999999999999999997 7899999999
Q ss_pred CcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCC
Q 007411 465 KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPD 544 (604)
Q Consensus 465 g~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spd 544 (604)
++|++||+.+.+++..+. +|...|.++.+.+. ..+++|+.|+.|++||+++.. .....+.+|. ..+.. +...
T Consensus 351 ~~v~VW~~~~~~cl~sl~-gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~--~c~~tl~~h~--~~v~~--l~~~ 422 (537)
T KOG0274|consen 351 GTVKVWDPRTGKCLKSLS-GHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR--KCIHTLQGHT--SLVSS--LLLR 422 (537)
T ss_pred ceEEEEEhhhceeeeeec-CCcceEEEEEecCc-ceEEeeeeccceEeecCCchh--hhhhhhcCCc--ccccc--cccc
Confidence 999999999999999887 49999999988765 899999999999999999873 3345666663 33433 3346
Q ss_pred CCEEEEEcCCCcEEEEeCCCCeeEEEEec-CCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007411 545 GRFVMSGDGEGKCWFWDWKSCKVFRTLKC-HEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 545 g~~L~sgs~dG~I~iwd~~t~~~~~~l~~-h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
+++|++++.||.|++||..+++++.++.+ |.+.|..+++. ...+++++.||.+++||
T Consensus 423 ~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~---~~~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 423 DNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG---KEEILCSSDDGSVKLWD 480 (537)
T ss_pred cceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC---cceEEEEecCCeeEEEe
Confidence 88999999999999999999999999998 67888888885 35799999999999997
No 54
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.96 E-value=1e-27 Score=228.06 Aligned_cols=283 Identities=22% Similarity=0.374 Sum_probs=239.4
Q ss_pred ccCCCCCCccccCcceeeccCccccccceeecCCCccccCCCCcccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECC
Q 007411 256 GNAGGEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMD 335 (604)
Q Consensus 256 ~~~~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~D 335 (604)
+++|+....++.+..++..+.+.|.++=+|..-.. .+-..+++||++.|..+.|.++ +..|++++.|
T Consensus 45 gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gd------------ceN~~~lkgHsgAVM~l~~~~d-~s~i~S~gtD 111 (338)
T KOG0265|consen 45 GHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGD------------CENFWVLKGHSGAVMELHGMRD-GSHILSCGTD 111 (338)
T ss_pred CCcceEEEEEECCCCCeEeecCCcceEEEEecccc------------ccceeeeccccceeEeeeeccC-CCEEEEecCC
Confidence 45566666778888889999999999999964322 1334577799999999999999 9999999999
Q ss_pred CcEEEEecCCCCeeeEEecCCCCceeeEEEccCCC-EEEEEECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCc
Q 007411 336 TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGT-KFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQN 414 (604)
Q Consensus 336 g~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~-~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~ 414 (604)
.+|+.||+ .++++++.+++|...|+.+.-+.-|. ++.+++.||+++|||+++...++++........+.|....+
T Consensus 112 k~v~~wD~-~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~--- 187 (338)
T KOG0265|consen 112 KTVRGWDA-ETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSD--- 187 (338)
T ss_pred ceEEEEec-ccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEeccccc---
Confidence 99999999 79999999999999999999555454 55688889999999999999999998888888888876554
Q ss_pred EEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCC----eEEEEeecCCCC---
Q 007411 415 ILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP----VVIKYISEPHMH--- 487 (604)
Q Consensus 415 ~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~----~~~~~~~~~~~~--- 487 (604)
.+++|+-|+.|++||++.+.....+.+|..+|+.+..+++|.++++-+.|.++++||++.. .++..+ .++.+
T Consensus 188 qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if-~g~~hnfe 266 (338)
T KOG0265|consen 188 QVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIF-QGHIHNFE 266 (338)
T ss_pred ceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEe-ecchhhhh
Confidence 5999999999999999999999999999999999999999999999999999999999753 223332 23322
Q ss_pred -cccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEe
Q 007411 488 -SMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 561 (604)
Q Consensus 488 -~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd 561 (604)
....++|+|++..+.+|+.|..+++||......+ ..+.|| .+.|.++.|+|...+|.+++.|.+|++=.
T Consensus 267 knlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~l---yklpGh--~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 267 KNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRIL---YKLPGH--YGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred hhcceeeccCCCCccccccccceEEEeecccccEE---EEcCCc--ceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 3567899999999999999999999998775444 456677 57799999999999999999999998743
No 55
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3e-26 Score=220.16 Aligned_cols=287 Identities=18% Similarity=0.350 Sum_probs=234.7
Q ss_pred ceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEEC--CCcE
Q 007411 304 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASY--DKNI 381 (604)
Q Consensus 304 ~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~--Dg~I 381 (604)
++.+.|..-.+.|++|.|+++ |.+|++++.|.+++|||. .+++.++++..+.-.|..++|....+.++.++. |.+|
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~-G~~litss~dDsl~LYd~-~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDD-GLLLITSSEDDSLRLYDS-LSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred ccccccccCCCceeEEEecCC-CCEEEEecCCCeEEEEEc-CCCceeeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence 344556667888999999999 999999999999999999 789999999999899999999988888887777 8899
Q ss_pred EEEECCCCcEEEEeeCCCc-ceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEE
Q 007411 382 KYWDTETGQVIRTFSTGKI-PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVT 460 (604)
Q Consensus 382 ~vWD~~t~~~i~~~~~~~~-~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~s 460 (604)
++.++.+.+.++.|..+.. +..++.+|-+ ..+++++.|++|++||++..++...+. ...-..++|.|+|-+|++
T Consensus 83 ryLsl~dNkylRYF~GH~~~V~sL~~sP~~---d~FlS~S~D~tvrLWDlR~~~cqg~l~--~~~~pi~AfDp~GLifA~ 157 (311)
T KOG1446|consen 83 RYLSLHDNKYLRYFPGHKKRVNSLSVSPKD---DTFLSSSLDKTVRLWDLRVKKCQGLLN--LSGRPIAAFDPEGLIFAL 157 (311)
T ss_pred EEEEeecCceEEEcCCCCceEEEEEecCCC---CeEEecccCCeEEeeEecCCCCceEEe--cCCCcceeECCCCcEEEE
Confidence 9999999999999976543 4566666654 579999999999999999887766664 334456899999999999
Q ss_pred EeCCCcEEEEECCCC--eE--EEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCccccc-c
Q 007411 461 SSDDKSLRVWEFGIP--VV--IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAG-Y 535 (604)
Q Consensus 461 gs~Dg~I~iwdl~~~--~~--~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~-~ 535 (604)
+.....|++||++.- .+ ...+..+.....+.|.|+|+|++|+.++..+.+++.|.-++..+.. +.++.... .
T Consensus 158 ~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~t---fs~~~~~~~~ 234 (311)
T KOG1446|consen 158 ANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKST---FSGYPNAGNL 234 (311)
T ss_pred ecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeee---EeeccCCCCc
Confidence 998889999999863 22 2333334567789999999999999999999999999988775433 33332222 2
Q ss_pred eEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEec-CCCcEEEEEEecCCCCEEEEEeCCCcEEEe
Q 007411 536 ACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC-HEGVCIGCEWHPLEQSKVATCGWDGLIKYW 603 (604)
Q Consensus 536 v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~-h~~~V~~v~~sp~~~~~l~tgg~DG~I~vW 603 (604)
....+|+||+++|++|+.||+|.+|++.+++.+..+++ +.+++.++.|+| .-.+++|+ +..+.+|
T Consensus 235 ~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP-~~~mf~sa--~s~l~fw 300 (311)
T KOG1446|consen 235 PLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNP-RYAMFVSA--SSNLVFW 300 (311)
T ss_pred ceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCC-ceeeeeec--CceEEEE
Confidence 24688999999999999999999999999999999998 788999999999 44455555 4467777
No 56
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.8e-27 Score=251.34 Aligned_cols=306 Identities=20% Similarity=0.377 Sum_probs=237.8
Q ss_pred ceeecCCCccccCCCCcccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceee
Q 007411 283 RSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRD 362 (604)
Q Consensus 283 r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~ 362 (604)
|.|+...-....+--|+|--..+++.|.+|.++|..|+|+|. +.+++||+.|-+|+||+. ...+|+.++.||-.-|+.
T Consensus 21 rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~-qplFVSGGDDykIkVWnY-k~rrclftL~GHlDYVRt 98 (1202)
T KOG0292|consen 21 RPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPT-QPLFVSGGDDYKIKVWNY-KTRRCLFTLLGHLDYVRT 98 (1202)
T ss_pred CCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCC-CCeEEecCCccEEEEEec-ccceehhhhccccceeEE
Confidence 334444433334445677777899999999999999999999 999999999999999999 789999999999999999
Q ss_pred EEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCC-CcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCc-------
Q 007411 363 ISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE------- 434 (604)
Q Consensus 363 l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~------- 434 (604)
+.|++.-.+|+|+|.|.+|+||++.+++++..+..+ |.+.|..|+|.. .++++++-|.+|++||+...+
T Consensus 99 ~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptE---DlIVSaSLDQTVRVWDisGLRkk~~~pg 175 (1202)
T KOG0292|consen 99 VFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTE---DLIVSASLDQTVRVWDISGLRKKNKAPG 175 (1202)
T ss_pred eeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCcc---ceEEEecccceEEEEeecchhccCCCCC
Confidence 999999999999999999999999999999998653 344455566644 589999999999999985210
Q ss_pred ----------------------eEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeE-EEEeecCCCCcccE
Q 007411 435 ----------------------ITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVV-IKYISEPHMHSMPS 491 (604)
Q Consensus 435 ----------------------~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~-~~~~~~~~~~~v~~ 491 (604)
..+.+.+|...|+.++|+|.-..|++|++|..|++|.+...+. ......+|.+.|.+
T Consensus 176 ~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVss 255 (1202)
T KOG0292|consen 176 SLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSS 255 (1202)
T ss_pred CchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcce
Confidence 1245678999999999999999999999999999999865443 23334579999999
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCc---------------
Q 007411 492 ISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGK--------------- 556 (604)
Q Consensus 492 l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~--------------- 556 (604)
+-|||...++++.+.|++|+|||+..+..+...+.- ......++-+|..+++++|-..|.
T Consensus 256 vlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrre-----ndRFW~laahP~lNLfAAgHDsGm~VFkleRErpa~~v~ 330 (1202)
T KOG0292|consen 256 VLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRE-----NDRFWILAAHPELNLFAAGHDSGMIVFKLERERPAYAVN 330 (1202)
T ss_pred EEecCccceeEecCCCccEEEEecccccceeeeecc-----CCeEEEEEecCCcceeeeecCCceEEEEEcccCceEEEc
Confidence 999999999999999999999999877666444332 234556888888888877765443
Q ss_pred -----------EEEEeCCCCe--eEEEEecC---CCcEEEEEEecCCCCEEEEEeCCC
Q 007411 557 -----------CWFWDWKSCK--VFRTLKCH---EGVCIGCEWHPLEQSKVATCGWDG 598 (604)
Q Consensus 557 -----------I~iwd~~t~~--~~~~l~~h---~~~V~~v~~sp~~~~~l~tgg~DG 598 (604)
|+.+|+.+.+ .+..++.. -.++.++.++|..+..|++...|+
T Consensus 331 ~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n 388 (1202)
T KOG0292|consen 331 GNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDN 388 (1202)
T ss_pred CCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCC
Confidence 2233333322 12223322 257888999996666666655444
No 57
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.8e-27 Score=246.92 Aligned_cols=273 Identities=18% Similarity=0.325 Sum_probs=234.0
Q ss_pred EEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEee
Q 007411 317 SAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFS 396 (604)
Q Consensus 317 ~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~ 396 (604)
.-+.|+. .+.|++|. ...|.+|+. .++........+...|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.
T Consensus 181 nlldWss--~n~laVal-g~~vylW~~-~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~ 256 (484)
T KOG0305|consen 181 NLLDWSS--ANVLAVAL-GQSVYLWSA-SSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLR 256 (484)
T ss_pred hHhhccc--CCeEEEEe-cceEEEEec-CCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccccccc
Confidence 3456774 45676665 357999998 5666555555558999999999999999999999999999999999999998
Q ss_pred CCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEE-EcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 007411 397 TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQE-YDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP 475 (604)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~-~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~ 475 (604)
.++...+.++.+.. ..+.+|+.++.|.++|++..+.... +.+|...|..+.|++++++|++|+.|+.+.|||....
T Consensus 257 ~~h~~rvg~laW~~---~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~ 333 (484)
T KOG0305|consen 257 GSHASRVGSLAWNS---SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP 333 (484)
T ss_pred CCcCceeEEEeccC---ceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCc
Confidence 87777777777653 6899999999999999998866555 8899999999999999999999999999999999877
Q ss_pred eEEEEeecCCCCcccEEEEcCC-CCEEEEE--EcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEE--
Q 007411 476 VVIKYISEPHMHSMPSISLHPN-TNWLAAQ--SLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMS-- 550 (604)
Q Consensus 476 ~~~~~~~~~~~~~v~~l~~sp~-g~~l~s~--s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~s-- 550 (604)
.+...+. .|...|..++|+|- ..+||+| +.|+.|++|+..++..+..+.. ...||.|.|++..+-|++
T Consensus 334 ~p~~~~~-~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt------gsQVcsL~Wsk~~kEi~sth 406 (484)
T KOG0305|consen 334 EPKFTFT-EHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT------GSQVCSLIWSKKYKELLSTH 406 (484)
T ss_pred cccEEEe-ccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc------CCceeeEEEcCCCCEEEEec
Confidence 7777775 59999999999995 5678876 4789999999998876654433 578999999999877765
Q ss_pred EcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007411 551 GDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 551 gs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
|..++.|.||++.+.+.+..+.+|...|..++++| ++..|++|+.|.+|++|+
T Consensus 407 G~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SP-dg~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 407 GYSENQITLWKYPSMKLVAELLGHTSRVLYLALSP-DGETIVTGAADETLRFWN 459 (484)
T ss_pred CCCCCcEEEEeccccceeeeecCCcceeEEEEECC-CCCEEEEecccCcEEecc
Confidence 44678999999999999999999999999999999 788999999999999996
No 58
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=1.2e-26 Score=231.78 Aligned_cols=244 Identities=31% Similarity=0.532 Sum_probs=211.4
Q ss_pred EEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcce-EEEEccCCCCCcEEEEEEcCCeEEEEe
Q 007411 351 RTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPY-VVKLNPDDDKQNILLAGMSDKKIVQWD 429 (604)
Q Consensus 351 ~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~-~~~~~~~~~~~~~lvsg~~dg~I~iwD 429 (604)
.++.+|..+|++++|+|++++|++++.||.|++|++.+++....+..+.... .+.+.+.+ ..+++++.+|.|++||
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~~~~i~i~~ 79 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADG---TYLASGSSDKTIRLWD 79 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCC---CEEEEEcCCCeEEEEE
Confidence 4577899999999999999999999999999999999988777776554443 66666644 6799999999999999
Q ss_pred CCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCe
Q 007411 430 MNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQ 509 (604)
Q Consensus 430 ~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~ 509 (604)
+.+++.+..+..|...|.++.|+++++++++++.++.|++||+.+......+. .|...+.++.|+|++.++++++.++.
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~ 158 (289)
T cd00200 80 LETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR-GHTDWVNSVAFSPDGTFVASSSQDGT 158 (289)
T ss_pred cCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec-cCCCcEEEEEEcCcCCEEEEEcCCCc
Confidence 99988888898999999999999998888888889999999999887777665 57788999999999999998888999
Q ss_pred EEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCC
Q 007411 510 ILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQS 589 (604)
Q Consensus 510 I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~ 589 (604)
|++||++....... +..+ ...+.++.|+|+++.|++++.+|.|++||+.+++.+..+..|...+.++.|+| ++.
T Consensus 159 i~i~d~~~~~~~~~---~~~~--~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~ 232 (289)
T cd00200 159 IKLWDLRTGKCVAT---LTGH--TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP-DGY 232 (289)
T ss_pred EEEEEcccccccee---EecC--ccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcC-CCc
Confidence 99999986554432 3333 35688899999999999999999999999999999999988999999999999 577
Q ss_pred EEEEEeCCCcEEEeC
Q 007411 590 KVATCGWDGLIKYWD 604 (604)
Q Consensus 590 ~l~tgg~DG~I~vWD 604 (604)
++++++.||.|++||
T Consensus 233 ~~~~~~~~~~i~i~~ 247 (289)
T cd00200 233 LLASGSEDGTIRVWD 247 (289)
T ss_pred EEEEEcCCCcEEEEE
Confidence 888888899999997
No 59
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=2.1e-26 Score=266.32 Aligned_cols=287 Identities=17% Similarity=0.261 Sum_probs=224.1
Q ss_pred cccCcceeeccCccccccceeecCCCccccCCCCcccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecC
Q 007411 265 HVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVV 344 (604)
Q Consensus 265 ~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~ 344 (604)
.+.+...+..+...|...+.|-........ .....++..+.+ ...|.+++|+|..+.+|++++.||+|+|||+
T Consensus 490 ~fs~dg~~latgg~D~~I~iwd~~~~~~~~-----~~~~~~~~~~~~-~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~- 562 (793)
T PLN00181 490 GFDRDGEFFATAGVNKKIKIFECESIIKDG-----RDIHYPVVELAS-RSKLSGICWNSYIKSQVASSNFEGVVQVWDV- 562 (793)
T ss_pred EECCCCCEEEEEeCCCEEEEEECCcccccc-----cccccceEEecc-cCceeeEEeccCCCCEEEEEeCCCeEEEEEC-
Confidence 344455566677778888888643211000 001112334444 4679999999876889999999999999999
Q ss_pred CCCeeeEEecCCCCceeeEEEcc-CCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCC
Q 007411 345 NSGKCMRTYMGHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK 423 (604)
Q Consensus 345 ~~~~~~~~~~~h~~~V~~l~fsp-dg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg 423 (604)
.+++.+..+.+|...|++++|+| ++.+|++|+.||.|++||+.++..+..+.......++.+.+ ..+.+|++|+.||
T Consensus 563 ~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~--~~g~~latgs~dg 640 (793)
T PLN00181 563 ARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPS--ESGRSLAFGSADH 640 (793)
T ss_pred CCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeC--CCCCEEEEEeCCC
Confidence 67888899999999999999997 78999999999999999999999988887666666666644 3457899999999
Q ss_pred eEEEEeCCCCc-eEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCC------eEEEEeecCCCCcccEEEEcC
Q 007411 424 KIVQWDMNTKE-ITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP------VVIKYISEPHMHSMPSISLHP 496 (604)
Q Consensus 424 ~I~iwD~~s~~-~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~------~~~~~~~~~~~~~v~~l~~sp 496 (604)
.|++||+++.. .+..+.+|...|.++.|. ++..|++++.|++|++||++.. ..+..+ ..|...+.+++|+|
T Consensus 641 ~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~-~gh~~~i~~v~~s~ 718 (793)
T PLN00181 641 KVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSF-MGHTNVKNFVGLSV 718 (793)
T ss_pred eEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEE-cCCCCCeeEEEEcC
Confidence 99999998865 567788999999999997 6789999999999999999753 344444 35888899999999
Q ss_pred CCCEEEEEEcCCeEEEEEcCCceeecccc-----cc---cCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeC
Q 007411 497 NTNWLAAQSLDNQILIYSTRERFQLNKKK-----RF---AGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 562 (604)
Q Consensus 497 ~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~-----~~---~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~ 562 (604)
++.+|++|+.|+.|++|+........... .. ........|.+++|+|++.+|++|+.+|.|+||++
T Consensus 719 ~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 719 SDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 99999999999999999976543221110 00 11112356889999999999999999999999986
No 60
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=5.3e-27 Score=223.29 Aligned_cols=281 Identities=21% Similarity=0.362 Sum_probs=228.2
Q ss_pred CCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeee-EEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCC
Q 007411 311 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCM-RTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG 389 (604)
Q Consensus 311 gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~-~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~ 389 (604)
.-.+.|.+|+|||....+|+.||-||+||+|++...+..+ +....|.++|.+++|+.+|..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 3457799999999757788899999999999997655433 445679999999999999999999999999999999999
Q ss_pred cEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEE
Q 007411 390 QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRV 469 (604)
Q Consensus 390 ~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~i 469 (604)
+....-.+...+.++.|..... -.+|++|+-|++|+.||+|+..++.++. -...+.++..- ..+++++..++.|.+
T Consensus 105 Q~~~v~~Hd~pvkt~~wv~~~~-~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~--~pm~vVata~r~i~v 180 (347)
T KOG0647|consen 105 QVSQVAAHDAPVKTCHWVPGMN-YQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVL--YPMAVVATAERHIAV 180 (347)
T ss_pred CeeeeeecccceeEEEEecCCC-cceeEecccccceeecccCCCCeeeeee-ccceeeehhcc--CceeEEEecCCcEEE
Confidence 8777766667777777776543 4689999999999999999998888875 45667776653 458889999999999
Q ss_pred EECCCC-eEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCccc-------ccceEEEEE
Q 007411 470 WEFGIP-VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIV-------AGYACQVNF 541 (604)
Q Consensus 470 wdl~~~-~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~-------~~~v~~l~~ 541 (604)
|+|+.+ ...+.+..+....+.|+++.++....+.|+-.|.+.|..+..+.. .....|+.|.. --.|.+|+|
T Consensus 181 ynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~-~~nFtFkCHR~~~~~~~~VYaVNsi~F 259 (347)
T KOG0647|consen 181 YNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP-KDNFTFKCHRSTNSVNDDVYAVNSIAF 259 (347)
T ss_pred EEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc-cCceeEEEeccCCCCCCceEEecceEe
Confidence 999655 445566667788899999999998889999999999998877533 22233444431 124778999
Q ss_pred cCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEE-EEeCC
Q 007411 542 SPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVA-TCGWD 597 (604)
Q Consensus 542 spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~-tgg~D 597 (604)
+|....|+++++||++.+||-.....+.+...|..+|+++.|+. ++++++ ..|.|
T Consensus 260 hP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~-~G~ifaYA~gYD 315 (347)
T KOG0647|consen 260 HPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNR-NGSIFAYALGYD 315 (347)
T ss_pred ecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecC-CCCEEEEEeecc
Confidence 99999999999999999999988888888899999999999999 555544 44554
No 61
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.8e-27 Score=237.89 Aligned_cols=309 Identities=17% Similarity=0.297 Sum_probs=240.6
Q ss_pred CccccccceeecCCCccccCCCCcccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeee-----
Q 007411 276 EETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCM----- 350 (604)
Q Consensus 276 ~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~----- 350 (604)
+..+.+||.+......++.... .. +..+..|.-+|+||+++|+ ..++++++.+|+|.-|++. +++..
T Consensus 111 d~le~~Gr~~r~~a~~v~~~~s-----~~-~~~~~~H~~s~~~vals~d-~~~~fsask~g~i~kw~v~-tgk~~~~i~~ 182 (479)
T KOG0299|consen 111 DVLEQSGRVRRLVADKVQAPES-----SD-FRVIGKHQLSVTSVALSPD-DKRVFSASKDGTILKWDVL-TGKKDRYIIE 182 (479)
T ss_pred HHHHhcceeehhhhhhcccccc-----cc-ceeeccccCcceEEEeecc-ccceeecCCCcceeeeehh-cCcccccccc
Confidence 3445667766554443322221 12 5678899999999999999 9999999999999999984 33211
Q ss_pred ------------EEe-cCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcc-eEEEEccCCCCCcEE
Q 007411 351 ------------RTY-MGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP-YVVKLNPDDDKQNIL 416 (604)
Q Consensus 351 ------------~~~-~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~-~~~~~~~~~~~~~~l 416 (604)
..- .+|...|.+++.++||++|++|+.|..|.||+.++.+.+..+..+... ..++|... .+-+
T Consensus 183 ~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~g---t~~l 259 (479)
T KOG0299|consen 183 RDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKG---TSEL 259 (479)
T ss_pred cchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecC---ccce
Confidence 111 378899999999999999999999999999999999999998665443 34444432 2569
Q ss_pred EEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcC
Q 007411 417 LAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHP 496 (604)
Q Consensus 417 vsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp 496 (604)
++++.|..|++|++.....+.++-+|.+.|..|....-++.+-+|+.|+++++|++... .+.+..++...+.|++|-
T Consensus 260 ys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee--sqlifrg~~~sidcv~~I- 336 (479)
T KOG0299|consen 260 YSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE--SQLIFRGGEGSIDCVAFI- 336 (479)
T ss_pred eeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccc--ceeeeeCCCCCeeeEEEe-
Confidence 99999999999999999999999999999999999988888888889999999999443 344445788899999998
Q ss_pred CCCEEEEEEcCCeEEEEEcCCceeecccccccCccc-------ccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCC----
Q 007411 497 NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIV-------AGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC---- 565 (604)
Q Consensus 497 ~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~-------~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~---- 565 (604)
+...|++|+.+|.|.+|++.....+.....-.+... ..+|++++..|...++++|+.+|.|++|-+..+
T Consensus 337 n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i 416 (479)
T KOG0299|consen 337 NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAI 416 (479)
T ss_pred cccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcccc
Confidence 456799999999999999987766654443322221 138999999999999999999999999998776
Q ss_pred eeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCc
Q 007411 566 KVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGL 599 (604)
Q Consensus 566 ~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~ 599 (604)
.++..+. -.+.|++++|++++..+++.+|..-.
T Consensus 417 ~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhR 449 (479)
T KOG0299|consen 417 NLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHR 449 (479)
T ss_pred ceeeecc-cccEEEEEEEccCCCEEEEecccccc
Confidence 4556665 56789999999944435555555433
No 62
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.4e-27 Score=220.54 Aligned_cols=281 Identities=22% Similarity=0.369 Sum_probs=223.5
Q ss_pred EEEEEcCCCCCEEEEEE-------CCCcEEEEecCCCCeeeEEe--cCCCCceeeEEEcc-CCCEEEEEECCCcEEEEEC
Q 007411 317 SAIRFFPKYGHLILSAG-------MDTKVKIWDVVNSGKCMRTY--MGHSKAVRDISFCN-DGTKFLTASYDKNIKYWDT 386 (604)
Q Consensus 317 ~~l~fsp~~g~~L~sgs-------~Dg~I~IWd~~~~~~~~~~~--~~h~~~V~~l~fsp-dg~~L~s~s~Dg~I~vWD~ 386 (604)
.++.|||--.++|+.+. ..|++.|-++. ..+-+..+ ..-...+.+++|++ ..+.+++++.||+++|||+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~-~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVT-DPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDL 90 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecC-CCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEecc
Confidence 57789986556665553 36889999983 33333322 23567899999999 4578889999999999996
Q ss_pred CC-CcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCC-CCEEEEEeCC
Q 007411 387 ET-GQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS-NRRFVTSSDD 464 (604)
Q Consensus 387 ~t-~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~-~~~l~sgs~D 464 (604)
.. ..++..++.+ ...+..+.........+++++-|++|++|+...+..++++.+|...|....|+|. .+.|+++|.|
T Consensus 91 ~~~s~Pi~~~kEH-~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd 169 (311)
T KOG0277|consen 91 TMPSKPIHKFKEH-KREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGD 169 (311)
T ss_pred CCCCcchhHHHhh-hhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCC
Confidence 43 2455555443 3334444444455577888999999999999999999999999999999999985 6789999999
Q ss_pred CcEEEEECCCCeEEEEeecCCCCcccEEEEcC-CCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcC
Q 007411 465 KSLRVWEFGIPVVIKYISEPHMHSMPSISLHP-NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP 543 (604)
Q Consensus 465 g~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp 543 (604)
+++++||++.+.....+ ..|...+.++.|+. +.+.|++|+.|+.|++||+++-. ..+..+.+| .-.|..+.|||
T Consensus 170 ~~l~lwdvr~~gk~~~i-~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r--~pl~eL~gh--~~AVRkvk~Sp 244 (311)
T KOG0277|consen 170 GTLRLWDVRSPGKFMSI-EAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR--TPLFELNGH--GLAVRKVKFSP 244 (311)
T ss_pred ceEEEEEecCCCceeEE-EeccceeEeecccccCCcEEEecCCCceEEEEehhhcc--ccceeecCC--ceEEEEEecCc
Confidence 99999999887555554 35778999999987 56789999999999999998754 234556777 45688999999
Q ss_pred C-CCEEEEEcCCCcEEEEeCCC-CeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007411 544 D-GRFVMSGDGEGKCWFWDWKS-CKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 544 d-g~~L~sgs~dG~I~iwd~~t-~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
. ..+|++++.|-+++|||... -.++.+...|+.-|..+.|++..+.+++++|+|+.++||+
T Consensus 245 h~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 245 HHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred chhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 5 45789999999999999874 4456677788999999999999999999999999999996
No 63
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=1.5e-28 Score=237.00 Aligned_cols=256 Identities=21% Similarity=0.408 Sum_probs=210.8
Q ss_pred CCCCcccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEE
Q 007411 295 ANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLT 374 (604)
Q Consensus 295 ~~~~~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s 374 (604)
...|......+++.+.||++.|.|+.|. ..+|++|++|.+|+|||+ ++++++.++.+|...|..+.|+. .++++
T Consensus 219 ikiWD~n~~~c~~~L~GHtGSVLCLqyd---~rviisGSSDsTvrvWDv-~tge~l~tlihHceaVLhlrf~n--g~mvt 292 (499)
T KOG0281|consen 219 IKIWDKNSLECLKILTGHTGSVLCLQYD---ERVIVSGSSDSTVRVWDV-NTGEPLNTLIHHCEAVLHLRFSN--GYMVT 292 (499)
T ss_pred eEEeccccHHHHHhhhcCCCcEEeeecc---ceEEEecCCCceEEEEec-cCCchhhHHhhhcceeEEEEEeC--CEEEE
Confidence 3445556667889999999999999996 569999999999999999 89999999999999999999974 59999
Q ss_pred EECCCcEEEEECCCCcEEE--EeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEe
Q 007411 375 ASYDKNIKYWDTETGQVIR--TFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFV 452 (604)
Q Consensus 375 ~s~Dg~I~vWD~~t~~~i~--~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~s 452 (604)
++.|.+|.+||+.....+. ..-.++...+..+.+++ .++++++.|.+|++|++.+++.+.++.+|...|.|+.+
T Consensus 293 cSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~---kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY- 368 (499)
T KOG0281|consen 293 CSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY- 368 (499)
T ss_pred ecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc---ceEEEecCCceEEEEeccceeeehhhhcccccceehhc-
Confidence 9999999999998654221 12234444444444433 59999999999999999999999999999999999998
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeec------cccc
Q 007411 453 DSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN------KKKR 526 (604)
Q Consensus 453 p~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~------~~~~ 526 (604)
.++++++||.|.+|++||+..+.+++.+. +|..-|.++.| +.+.+++|+.||.|++||+....... ....
T Consensus 369 -r~rlvVSGSSDntIRlwdi~~G~cLRvLe-GHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~ 444 (499)
T KOG0281|consen 369 -RDRLVVSGSSDNTIRLWDIECGACLRVLE-GHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRT 444 (499)
T ss_pred -cCeEEEecCCCceEEEEeccccHHHHHHh-chHHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHh
Confidence 57899999999999999999999888774 68899999999 57789999999999999997654331 1122
Q ss_pred ccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeE
Q 007411 527 FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVF 568 (604)
Q Consensus 527 ~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~ 568 (604)
+..| .+.|..+.| |...|++++.|.+|.|||+..+..-
T Consensus 445 lv~h--sgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 445 LVEH--SGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred hhhc--cceeEEEee--cceEEEeccCCCeEEEEEcCCCCcc
Confidence 2223 567888888 6678999999999999999776543
No 64
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.8e-27 Score=220.14 Aligned_cols=268 Identities=18% Similarity=0.345 Sum_probs=217.4
Q ss_pred cccceeecCCCccccCCCCcccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCc
Q 007411 280 YQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKA 359 (604)
Q Consensus 280 ~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~ 359 (604)
..||+++....+.+...+ ...+ .-.+.+..++|++...+.+++++.||+++|||+.....+++.++.|...
T Consensus 36 G~G~L~ile~~~~~gi~e--------~~s~-d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~E 106 (311)
T KOG0277|consen 36 GNGRLFILEVTDPKGIQE--------CQSY-DTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKRE 106 (311)
T ss_pred cCceEEEEecCCCCCeEE--------EEee-ecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhh
Confidence 457888776653322222 1222 3467899999999989999999999999999997777899999999999
Q ss_pred eeeEEEcc-CCCEEEEEECCCcEEEEECCCCcEEEEeeCCC-cceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEE
Q 007411 360 VRDISFCN-DGTKFLTASYDKNIKYWDTETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQ 437 (604)
Q Consensus 360 V~~l~fsp-dg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~-~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~ 437 (604)
|.++.|++ .+..++++|.|++|++|+...++.+++|..+. .++...++|. .++++++++.|+.+++||++......
T Consensus 107 V~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~--~~nlfas~Sgd~~l~lwdvr~~gk~~ 184 (311)
T KOG0277|consen 107 VYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPH--IPNLFASASGDGTLRLWDVRSPGKFM 184 (311)
T ss_pred eEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCC--CCCeEEEccCCceEEEEEecCCCcee
Confidence 99999999 67788899999999999999999999987643 3455666665 45899999999999999998765555
Q ss_pred EEcCcCCceeEEEEeC-CCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCC-CCEEEEEEcCCeEEEEEc
Q 007411 438 EYDQHLGAVNTITFVD-SNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPN-TNWLAAQSLDNQILIYST 515 (604)
Q Consensus 438 ~~~~h~~~V~~i~~sp-~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~-g~~l~s~s~Dg~I~iwd~ 515 (604)
.+..|...|.|+.|+. +.+.++||+.|+.|++||++..+.......+|...|..+.|+|. ...|++++.|-+++|||.
T Consensus 185 ~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~ 264 (311)
T KOG0277|consen 185 SIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDP 264 (311)
T ss_pred EEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEeccc
Confidence 6889999999999996 45678999999999999998765443334679999999999996 468999999999999998
Q ss_pred CCceeecccccccCcccccceEEEEEcC-CCCEEEEEcCCCcEEEEeC
Q 007411 516 RERFQLNKKKRFAGHIVAGYACQVNFSP-DGRFVMSGDGEGKCWFWDW 562 (604)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~L~sgs~dG~I~iwd~ 562 (604)
...... +.....| ...++.+.||+ ++.++|+.+.|+.++||+-
T Consensus 265 ~~~ds~--~e~~~~H--tEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 265 ERQDSA--IETVDHH--TEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ccchhh--hhhhhcc--ceEEeccccccccCceeeecccccceeeecc
Confidence 744322 2233334 57788999998 6789999999999999983
No 65
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=2.6e-26 Score=240.77 Aligned_cols=283 Identities=18% Similarity=0.305 Sum_probs=242.2
Q ss_pred EEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEEC
Q 007411 307 HTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDT 386 (604)
Q Consensus 307 ~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~ 386 (604)
-++.||...|.+++++.+ ..+++|| ..+.|+||+. .+.+|++++... -+.+..|.|.++++++|...|.+.++|+
T Consensus 367 i~~~GHR~dVRsl~vS~d-~~~~~Sg-a~~SikiWn~-~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdl 441 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSD-SILLASG-AGESIKIWNR-DTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDL 441 (888)
T ss_pred eeeccchhheeEEEeecC-ceeeeec-CCCcEEEEEc-cCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEe
Confidence 456799999999999988 5555555 4678999999 789999999654 7899999999999999999999999999
Q ss_pred CCCcEEEEeeC-CCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCC-----Cce--EEEE-----cCcCCceeEEEEeC
Q 007411 387 ETGQVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT-----KEI--TQEY-----DQHLGAVNTITFVD 453 (604)
Q Consensus 387 ~t~~~i~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s-----~~~--~~~~-----~~h~~~V~~i~~sp 453 (604)
.+...+.++.. ....+.+...|++ ..+++|+.|.+|++||..- +.. +..+ -.-...|.|+.++|
T Consensus 442 aS~~l~Eti~AHdgaIWsi~~~pD~---~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp 518 (888)
T KOG0306|consen 442 ASASLVETIRAHDGAIWSISLSPDN---KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP 518 (888)
T ss_pred ehhhhhhhhhccccceeeeeecCCC---CceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC
Confidence 99888877764 3455677777765 4599999999999999741 111 1111 12356799999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccc
Q 007411 454 SNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVA 533 (604)
Q Consensus 454 ~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~ 533 (604)
++++|+++--|.+|+||-+.+.+....+. +|.-+|.||.++|+++.+++||.|..|++|-+.-+.+- +.+-+| .
T Consensus 519 dgk~LaVsLLdnTVkVyflDtlKFflsLY-GHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCH---KS~fAH--d 592 (888)
T KOG0306|consen 519 DGKLLAVSLLDNTVKVYFLDTLKFFLSLY-GHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCH---KSFFAH--D 592 (888)
T ss_pred CCcEEEEEeccCeEEEEEecceeeeeeec-ccccceeEEeccCCcCeEEeccCCCceEEeccccchhh---hhhhcc--c
Confidence 99999999999999999999888777665 69999999999999999999999999999988766544 445556 5
Q ss_pred cceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007411 534 GYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 534 ~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
..|+++.|-|+..++++++.||.|+-||-...+++..+.+|...|++++.+| ++++++++|.|.+|++|.
T Consensus 593 DSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~-~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 593 DSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSP-NGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred CceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcC-CCCeEEeccCCceeEeee
Confidence 6788999999999999999999999999999999999999999999999999 888999999999999994
No 66
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2e-26 Score=232.06 Aligned_cols=277 Identities=20% Similarity=0.303 Sum_probs=231.3
Q ss_pred CCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEE
Q 007411 313 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVI 392 (604)
Q Consensus 313 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i 392 (604)
-..|++|+|+|...+-+++.++ -.+.||+. .+....+++......|.+++|..||++|++|...|.|+|+|+.+...+
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S-~rvqly~~-~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iL 103 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSS-VRVQLYSS-VTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVIL 103 (487)
T ss_pred cCcceeEecCCCCCCceEEecc-cEEEEEec-chhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHH
Confidence 3569999999976666666554 46899998 566777777778899999999999999999999999999997775566
Q ss_pred EEeeCC-CcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCC-EEEEEeCCCcEEEE
Q 007411 393 RTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNR-RFVTSSDDKSLRVW 470 (604)
Q Consensus 393 ~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~-~l~sgs~Dg~I~iw 470 (604)
+.+..+ .+...+.|++.+. .++++|+.|+.+++||+.+......+.+|...|.|.+|+|.+. .+++||.||.|++|
T Consensus 104 R~~~ah~apv~~~~f~~~d~--t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~ 181 (487)
T KOG0310|consen 104 RQLYAHQAPVHVTKFSPQDN--TMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLW 181 (487)
T ss_pred HHHhhccCceeEEEecccCC--eEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEE
Confidence 666554 4455777777544 7899999999999999999987668999999999999999755 78999999999999
Q ss_pred ECCCCe-EEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEE
Q 007411 471 EFGIPV-VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVM 549 (604)
Q Consensus 471 dl~~~~-~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~ 549 (604)
|++... .+..+ .|..+|..+.+-|.|..|++++ .+.|++||+.++.+.. ..+..| ...|+|+.+..++..|+
T Consensus 182 DtR~~~~~v~el--nhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll--~~~~~H--~KtVTcL~l~s~~~rLl 254 (487)
T KOG0310|consen 182 DTRSLTSRVVEL--NHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLL--TSMFNH--NKTVTCLRLASDSTRLL 254 (487)
T ss_pred EeccCCceeEEe--cCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceeh--hhhhcc--cceEEEEEeecCCceEe
Confidence 999874 44444 6899999999999999999877 6779999998655442 222234 46799999999999999
Q ss_pred EEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEE
Q 007411 550 SGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKY 602 (604)
Q Consensus 550 sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~v 602 (604)
+|+-||.|++||+.+.+.+..+. -.++|.+++.+| +...++.|..+|.+.+
T Consensus 255 S~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~-dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 255 SGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSP-DDQTVVIGMSNGLVSI 305 (487)
T ss_pred ecccccceEEEEccceEEEEeee-cccceeeEEecC-CCceEEEecccceeee
Confidence 99999999999999999999987 567899999999 6778999999998754
No 67
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=2.1e-25 Score=240.61 Aligned_cols=266 Identities=16% Similarity=0.200 Sum_probs=200.5
Q ss_pred CCeEEEEEcCCCCCEEEEEECCCcEEEEecCC---------CCee---eEEecCCCCceeeEEEcc-CCCEEEEEECCCc
Q 007411 314 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN---------SGKC---MRTYMGHSKAVRDISFCN-DGTKFLTASYDKN 380 (604)
Q Consensus 314 ~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~---------~~~~---~~~~~~h~~~V~~l~fsp-dg~~L~s~s~Dg~ 380 (604)
..|.....+++ +..+++++.+.....|+... .++. ...+.+|.+.|++++|+| ++++|++|+.|++
T Consensus 21 ~~i~~~~~~~d-~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dgt 99 (493)
T PTZ00421 21 LNVTPSTALWD-CSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGT 99 (493)
T ss_pred eccccccccCC-CCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCE
Confidence 34555555555 55566776666666776521 1111 124678999999999999 8899999999999
Q ss_pred EEEEECCCCc-------EEEEeeCC-CcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEe
Q 007411 381 IKYWDTETGQ-------VIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFV 452 (604)
Q Consensus 381 I~vWD~~t~~-------~i~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~s 452 (604)
|+|||+.++. ++..+..+ ..+.++.|+|.. .++|++|+.|+.|++||+.+++.+..+..|...|.+++|+
T Consensus 100 IkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~--~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~s 177 (493)
T PTZ00421 100 IMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA--MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWN 177 (493)
T ss_pred EEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC--CCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEE
Confidence 9999997653 34444433 345567777653 3689999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCc-ccEEEEcCCCCEEEEEE----cCCeEEEEEcCCceeecccccc
Q 007411 453 DSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHS-MPSISLHPNTNWLAAQS----LDNQILIYSTRERFQLNKKKRF 527 (604)
Q Consensus 453 p~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~-v~~l~~sp~g~~l~s~s----~Dg~I~iwd~~~~~~~~~~~~~ 527 (604)
|++.+|++++.|+.|++||++++..+..+. .|... +..+.|.+++..|++++ .|+.|++||+++..... ...
T Consensus 178 pdG~lLatgs~Dg~IrIwD~rsg~~v~tl~-~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~--~~~ 254 (493)
T PTZ00421 178 LDGSLLCTTSKDKKLNIIDPRDGTIVSSVE-AHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPY--STV 254 (493)
T ss_pred CCCCEEEEecCCCEEEEEECCCCcEEEEEe-cCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCce--eEe
Confidence 999999999999999999999988877665 35443 45678899888877665 47899999998643221 111
Q ss_pred cCcccccceEEEEEcCCCCEEEEEc-CCCcEEEEeCCCCeeEEEEec-CCCcEEEEEEecC
Q 007411 528 AGHIVAGYACQVNFSPDGRFVMSGD-GEGKCWFWDWKSCKVFRTLKC-HEGVCIGCEWHPL 586 (604)
Q Consensus 528 ~~~~~~~~v~~l~~spdg~~L~sgs-~dG~I~iwd~~t~~~~~~l~~-h~~~V~~v~~sp~ 586 (604)
..+ ....+....|++++++|++|+ .||.|++||+.+++++..+.. +..++.+++|.|.
T Consensus 255 ~~d-~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 255 DLD-QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred ccC-CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 111 123455577999999999887 599999999999998777654 4456788888883
No 68
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.95 E-value=4e-26 Score=216.25 Aligned_cols=292 Identities=20% Similarity=0.328 Sum_probs=235.6
Q ss_pred cCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCC-----------eee---EEecCCCCceeeEEEcc-CCCEEEE
Q 007411 310 SGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG-----------KCM---RTYMGHSKAVRDISFCN-DGTKFLT 374 (604)
Q Consensus 310 ~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~-----------~~~---~~~~~h~~~V~~l~fsp-dg~~L~s 374 (604)
+.|.+.|+++...+..|+++++|+.||.|.+||+.+.. .|+ ..-.+|.-.|.++.|-| |...|.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 46899999999999989999999999999999995422 111 11236888999999999 7778999
Q ss_pred EECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCC
Q 007411 375 ASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS 454 (604)
Q Consensus 375 ~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~ 454 (604)
++.|.+++|||+++.+....|+....++...++|-.....++++|..+-+|++.|+.+|...+.+.+|.+.|.++.|+|.
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~ 199 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPS 199 (397)
T ss_pred ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccC
Confidence 99999999999999999999999999999999998877789999999999999999999999999999999999999998
Q ss_pred CCE-EEEEeCCCcEEEEECCCC-eEEEEe-------------ecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCce
Q 007411 455 NRR-FVTSSDDKSLRVWEFGIP-VVIKYI-------------SEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF 519 (604)
Q Consensus 455 ~~~-l~sgs~Dg~I~iwdl~~~-~~~~~~-------------~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~ 519 (604)
..+ |++|+.||.|++||++.. .+...+ ...|.+.+.+++|..++.++++++.|..+++|+..++.
T Consensus 200 ~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 200 SEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred ceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence 775 678999999999999754 222222 23467789999999999999999999999999987764
Q ss_pred eecccccccCcc-cccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCC
Q 007411 520 QLNKKKRFAGHI-VAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDG 598 (604)
Q Consensus 520 ~~~~~~~~~~~~-~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG 598 (604)
.......-..|. ..+....+. +-+...++---.++.+.++++-++..+..+..|-..|.++++.| +-....+|..|+
T Consensus 280 ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~-~fq~~~tg~~d~ 357 (397)
T KOG4283|consen 280 NTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRP-DFEQCFTGDMNG 357 (397)
T ss_pred ccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecC-chhhhhccccCC
Confidence 322111111110 011111122 33334444444568999999999999999999988999999998 666799999999
Q ss_pred cEEEe
Q 007411 599 LIKYW 603 (604)
Q Consensus 599 ~I~vW 603 (604)
.|..|
T Consensus 358 ni~~w 362 (397)
T KOG4283|consen 358 NIYMW 362 (397)
T ss_pred ccccc
Confidence 99988
No 69
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.8e-25 Score=208.72 Aligned_cols=244 Identities=20% Similarity=0.349 Sum_probs=203.3
Q ss_pred eeeEEecCCCCceeeEEEccC-CCEEEEEECCCcEEEEECCCC---cEEEEeeCC--CcceEEEEccCCCCCcEEEEEEc
Q 007411 348 KCMRTYMGHSKAVRDISFCND-GTKFLTASYDKNIKYWDTETG---QVIRTFSTG--KIPYVVKLNPDDDKQNILLAGMS 421 (604)
Q Consensus 348 ~~~~~~~~h~~~V~~l~fspd-g~~L~s~s~Dg~I~vWD~~t~---~~i~~~~~~--~~~~~~~~~~~~~~~~~lvsg~~ 421 (604)
..++.+.+|.+.|..++|+|- |..|++|+.|+.|++|++..+ .+...+... ..+..+++.|.+ ++|++|+.
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g---~~La~aSF 81 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHG---RYLASASF 81 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCC---cEEEEeec
Confidence 346678899999999999997 889999999999999999853 344444433 345567777755 69999999
Q ss_pred CCeEEEEeCCCC--ceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCe--EEEEeecCCCCcccEEEEcCC
Q 007411 422 DKKIVQWDMNTK--EITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPV--VIKYISEPHMHSMPSISLHPN 497 (604)
Q Consensus 422 dg~I~iwD~~s~--~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~--~~~~~~~~~~~~v~~l~~sp~ 497 (604)
|.++.||.-..+ +++..+.+|...|.|++|+++|++|++++.|++|-||.+.... ....+..+|...|..+.|||.
T Consensus 82 D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt 161 (312)
T KOG0645|consen 82 DATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPT 161 (312)
T ss_pred cceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCC
Confidence 999999987654 6888999999999999999999999999999999999997433 333444679999999999999
Q ss_pred CCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCc
Q 007411 498 TNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGV 577 (604)
Q Consensus 498 g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~ 577 (604)
..+|++++.|++|++|.-.....-.....+.+|. ..+.+++|++.|..|++++.|++|+||-..+.- -..|...
T Consensus 162 ~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~--~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~----~~~~sr~ 235 (312)
T KOG0645|consen 162 EDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHE--NTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL----SGMHSRA 235 (312)
T ss_pred cceeEEeccCCeEEEEeecCCCCeeEEEEecCcc--ceEEEEEecCCCceEEEecCCcceEeeeeccCc----chhcccc
Confidence 9999999999999999876444455567778884 478899999999999999999999999865221 1247889
Q ss_pred EEEEEEecCCCCEEEEEeCCCcEEEe
Q 007411 578 CIGCEWHPLEQSKVATCGWDGLIKYW 603 (604)
Q Consensus 578 V~~v~~sp~~~~~l~tgg~DG~I~vW 603 (604)
+..+.|. ...|+|++.|+.|++|
T Consensus 236 ~Y~v~W~---~~~IaS~ggD~~i~lf 258 (312)
T KOG0645|consen 236 LYDVPWD---NGVIASGGGDDAIRLF 258 (312)
T ss_pred eEeeeec---ccceEeccCCCEEEEE
Confidence 9999997 3589999999999987
No 70
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.9e-25 Score=212.50 Aligned_cols=248 Identities=18% Similarity=0.312 Sum_probs=205.7
Q ss_pred eeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcc-eEEEEccCCCCCcEEEEEEc--CCeE
Q 007411 349 CMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP-YVVKLNPDDDKQNILLAGMS--DKKI 425 (604)
Q Consensus 349 ~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~-~~~~~~~~~~~~~~lvsg~~--dg~I 425 (604)
+.+.+......|.+|.|+++|.+|++++.|.+|+|||..+++.++++...+.. ..++|.... +.++.++. |..|
T Consensus 6 ~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~---~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 6 PAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHS---NTVIHSSTKEDDTI 82 (311)
T ss_pred cccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCC---ceEEEccCCCCCce
Confidence 34455556788999999999999999999999999999999999999876543 455554433 45666666 8899
Q ss_pred EEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEE
Q 007411 426 VQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS 505 (604)
Q Consensus 426 ~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s 505 (604)
+..++.+.+.++.+.+|...|++|+.+|-+..|++++.|++|++||++...+...+. ...-..++++|.|-++|++.
T Consensus 83 ryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~---~~~~pi~AfDp~GLifA~~~ 159 (311)
T KOG1446|consen 83 RYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN---LSGRPIAAFDPEGLIFALAN 159 (311)
T ss_pred EEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEe---cCCCcceeECCCCcEEEEec
Confidence 999999999999999999999999999999999999999999999999888877763 34556789999999999999
Q ss_pred cCCeEEEEEcCCceeecccccccCc-ccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcE---EEE
Q 007411 506 LDNQILIYSTRERFQLNKKKRFAGH-IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVC---IGC 581 (604)
Q Consensus 506 ~Dg~I~iwd~~~~~~~~~~~~~~~~-~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V---~~v 581 (604)
..+.|++||++.-..- +...+.-. ........+.|||||++|+.++..+.+++.|.-+|..+.++..+...- .+.
T Consensus 160 ~~~~IkLyD~Rs~dkg-PF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a 238 (311)
T KOG1446|consen 160 GSELIKLYDLRSFDKG-PFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSA 238 (311)
T ss_pred CCCeEEEEEecccCCC-CceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeE
Confidence 8889999999864211 11111111 123557789999999999999999999999999999999998776532 678
Q ss_pred EEecCCCCEEEEEeCCCcEEEeC
Q 007411 582 EWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 582 ~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
.|+| ++.+|++|+.||+|.+|+
T Consensus 239 ~ftP-ds~Fvl~gs~dg~i~vw~ 260 (311)
T KOG1446|consen 239 TFTP-DSKFVLSGSDDGTIHVWN 260 (311)
T ss_pred EECC-CCcEEEEecCCCcEEEEE
Confidence 9999 788999999999999996
No 71
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=1.9e-26 Score=227.62 Aligned_cols=254 Identities=19% Similarity=0.324 Sum_probs=219.0
Q ss_pred CCCcccCcc--eeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEE
Q 007411 296 NDHCYIPKR--LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFL 373 (604)
Q Consensus 296 ~~~~~~p~~--~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~ 373 (604)
..|+..+.+ ++.+|.|-.++|+.+.|.++ ++.+++++.|+.+++|++ ...+...++.+|+..|+++.|......++
T Consensus 200 k~W~v~~~k~~~~~tLaGs~g~it~~d~d~~-~~~~iAas~d~~~r~Wnv-d~~r~~~TLsGHtdkVt~ak~~~~~~~vV 277 (459)
T KOG0288|consen 200 KLWNVLGEKSELISTLAGSLGNITSIDFDSD-NKHVIAASNDKNLRLWNV-DSLRLRHTLSGHTDKVTAAKFKLSHSRVV 277 (459)
T ss_pred hhhhcccchhhhhhhhhccCCCcceeeecCC-CceEEeecCCCceeeeec-cchhhhhhhcccccceeeehhhcccccee
Confidence 345555555 78899999999999999999 899999999999999999 78899999999999999999998777799
Q ss_pred EEECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeC
Q 007411 374 TASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVD 453 (604)
Q Consensus 374 s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp 453 (604)
+|+.|.+|++||+....|.+++-.......+.+.. ..+++|..|++|++||+++..++.....+. .|+++..++
T Consensus 278 sgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~-----~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~ 351 (459)
T KOG0288|consen 278 SGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSI-----SDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSM 351 (459)
T ss_pred eccccchhhhhhhhhhheeccccccccccceEecc-----eeeeecccccceEEEeccCCceeeEeecCc-ceeeEeecc
Confidence 99999999999999999988876665555454442 569999999999999999999999987665 999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeecC---CCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCc
Q 007411 454 SNRRFVTSSDDKSLRVWEFGIPVVIKYISEP---HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGH 530 (604)
Q Consensus 454 ~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~ 530 (604)
++..+++++.|.++.+.|+++......+... .....+.+.|+|++.|+++|+.||.|+||++.++........-..
T Consensus 352 ~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s- 430 (459)
T KOG0288|consen 352 DGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTS- 430 (459)
T ss_pred CCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCC-
Confidence 9999999999999999999998877666432 233488999999999999999999999999998876644433222
Q ss_pred ccccceEEEEEcCCCCEEEEEcCCCcEEEE
Q 007411 531 IVAGYACQVNFSPDGRFVMSGDGEGKCWFW 560 (604)
Q Consensus 531 ~~~~~v~~l~~spdg~~L~sgs~dG~I~iw 560 (604)
...|++++|+|.|.+|++++.++.+.+|
T Consensus 431 --~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 431 --NAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred --CcceEEEEEcCCCchhhcccCCcceEec
Confidence 3468999999999999999999999999
No 72
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=6.5e-24 Score=194.31 Aligned_cols=290 Identities=18% Similarity=0.286 Sum_probs=226.0
Q ss_pred eeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCC--------------CCeeeEEecCCCCceeeEEEccCCC
Q 007411 305 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN--------------SGKCMRTYMGHSKAVRDISFCNDGT 370 (604)
Q Consensus 305 ~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~--------------~~~~~~~~~~h~~~V~~l~fspdg~ 370 (604)
++.++ ..+..|.+++|+|. |.+.++|+...+.+|.-... .....+.-+.|.+.|.|.+|+|+|.
T Consensus 25 ~i~~l-~dsqairav~fhp~-g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ge 102 (350)
T KOG0641|consen 25 AINIL-EDSQAIRAVAFHPA-GGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGE 102 (350)
T ss_pred EEEEe-cchhheeeEEecCC-CceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccC
Confidence 44444 45678999999999 89999999999999875411 0112233456899999999999999
Q ss_pred EEEEEECCCcEEEEECCCCcE------EEEeeCCCcceEEEEccCCCC-CcEEEEE-EcCCeEEEEeCCCCceEEEEcCc
Q 007411 371 KFLTASYDKNIKYWDTETGQV------IRTFSTGKIPYVVKLNPDDDK-QNILLAG-MSDKKIVQWDMNTKEITQEYDQH 442 (604)
Q Consensus 371 ~L~s~s~Dg~I~vWD~~t~~~------i~~~~~~~~~~~~~~~~~~~~-~~~lvsg-~~dg~I~iwD~~s~~~~~~~~~h 442 (604)
+|++|+.|.+|++.-.+...+ +..-.....+.-++|..++.. +.+|+++ ..|..|++-|...|+..+.+.+|
T Consensus 103 liatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sgh 182 (350)
T KOG0641|consen 103 LIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGH 182 (350)
T ss_pred eEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCC
Confidence 999999999999987654332 111123344555666555433 3455544 45788999999999999999999
Q ss_pred CCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecC------CCCcccEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 007411 443 LGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEP------HMHSMPSISLHPNTNWLAAQSLDNQILIYSTR 516 (604)
Q Consensus 443 ~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~------~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~ 516 (604)
.+-|.++--- ++-+|++|+.|.+|++||++-+.++..+... ....|.++++.|.|++|++|-.|....+||++
T Consensus 183 tghilalysw-n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydir 261 (350)
T KOG0641|consen 183 TGHILALYSW-NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIR 261 (350)
T ss_pred cccEEEEEEe-cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEee
Confidence 9999887422 5779999999999999999999888877532 23568999999999999999999999999999
Q ss_pred CceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCC----eeEEEEecCCCcEEEEEEecCCCCEEE
Q 007411 517 ERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC----KVFRTLKCHEGVCIGCEWHPLEQSKVA 592 (604)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~----~~~~~l~~h~~~V~~v~~sp~~~~~l~ 592 (604)
.+..+. .+..| ...|.++.|||...|+++++.|..|++-|+... -++...-.|...+..+.|+|++ --++
T Consensus 262 g~r~iq---~f~ph--sadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d-~sfi 335 (350)
T KOG0641|consen 262 GGRMIQ---RFHPH--SADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQD-FSFI 335 (350)
T ss_pred CCceee---eeCCC--ccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCcc-ceee
Confidence 887663 44445 567889999999999999999999999998642 2344455689999999999954 4677
Q ss_pred EEeCCCcEEEe
Q 007411 593 TCGWDGLIKYW 603 (604)
Q Consensus 593 tgg~DG~I~vW 603 (604)
+.+.|.++.+|
T Consensus 336 sssadkt~tlw 346 (350)
T KOG0641|consen 336 SSSADKTATLW 346 (350)
T ss_pred eccCcceEEEe
Confidence 88899999999
No 73
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=3.4e-25 Score=211.81 Aligned_cols=296 Identities=17% Similarity=0.306 Sum_probs=233.4
Q ss_pred cCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCc
Q 007411 301 IPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKN 380 (604)
Q Consensus 301 ~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~ 380 (604)
.|.++-+++..-. -.|+.|++. |.+||+|..||.|.|||+ .+...-+.+.+|..+|++++||++|+.|+|+|.|..
T Consensus 13 ~PEel~~tld~~~--a~~~~Fs~~-G~~lAvGc~nG~vvI~D~-~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~s 88 (405)
T KOG1273|consen 13 YPEELTHTLDNPL--AECCQFSRW-GDYLAVGCANGRVVIYDF-DTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWS 88 (405)
T ss_pred ChHhhceeccCCc--cceEEeccC-cceeeeeccCCcEEEEEc-cccchhhhhhccccceeEEEecCCCCEeeeecCCce
Confidence 4566777775433 889999999 999999999999999999 677788899999999999999999999999999999
Q ss_pred EEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCc----CCceeEEEEeCCCC
Q 007411 381 IKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQH----LGAVNTITFVDSNR 456 (604)
Q Consensus 381 I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h----~~~V~~i~~sp~~~ 456 (604)
|++||+..|.+++.+....++..+.++|... +.+++.-.+..-.+.++..+.....-... .....+..|.+.|+
T Consensus 89 i~lwDl~~gs~l~rirf~spv~~~q~hp~k~--n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~ 166 (405)
T KOG1273|consen 89 IKLWDLLKGSPLKRIRFDSPVWGAQWHPRKR--NKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGK 166 (405)
T ss_pred eEEEeccCCCceeEEEccCccceeeeccccC--CeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCC
Confidence 9999999999999999999999999998654 55555555555555555443211111111 11223446889999
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCce------eecccccccCc
Q 007411 457 RFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF------QLNKKKRFAGH 530 (604)
Q Consensus 457 ~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~------~~~~~~~~~~~ 530 (604)
++++|...|.+.++|..+.+++..+.......|..+.++..|++|+.-+.|..|+.|++..-. .+.....+...
T Consensus 167 yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDv 246 (405)
T KOG1273|consen 167 YIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDV 246 (405)
T ss_pred EEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHH
Confidence 999999999999999999988877765555789999999999999999999999999986321 12222233333
Q ss_pred ccccceEEEEEcCCCCEEEEEcC-CCcEEEEeCCCCeeEEEEecCC-CcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007411 531 IVAGYACQVNFSPDGRFVMSGDG-EGKCWFWDWKSCKVFRTLKCHE-GVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 531 ~~~~~v~~l~~spdg~~L~sgs~-dG~I~iwd~~t~~~~~~l~~h~-~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
++...-.+++||.+|.|+++|+. ...++||.-..|.+++.+.+.. .....+.|+| -...+++. ..|.|+||.
T Consensus 247 VNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp-~rp~i~si-~sg~v~iw~ 320 (405)
T KOG1273|consen 247 VNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHP-VRPIIASI-ASGVVYIWA 320 (405)
T ss_pred HhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeeccccc-ceeeeeec-cCCceEEEE
Confidence 33444557899999999998874 4579999999999999999877 4678899999 45566666 689999993
No 74
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.9e-25 Score=212.57 Aligned_cols=250 Identities=19% Similarity=0.287 Sum_probs=198.6
Q ss_pred CCcccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCC--EEEE
Q 007411 297 DHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGT--KFLT 374 (604)
Q Consensus 297 ~~~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~--~L~s 374 (604)
..+-+...++..+..|.++|++++.+ +.+++|||.|-+|+|||+ .....+..+..|.+.|+++.|.+.-. .|++
T Consensus 27 ~s~~~~l~~lF~~~aH~~sitavAVs---~~~~aSGssDetI~IYDm-~k~~qlg~ll~HagsitaL~F~~~~S~shLlS 102 (362)
T KOG0294|consen 27 DSVKPTLKPLFAFSAHAGSITALAVS---GPYVASGSSDETIHIYDM-RKRKQLGILLSHAGSITALKFYPPLSKSHLLS 102 (362)
T ss_pred cccceeeeccccccccccceeEEEec---ceeEeccCCCCcEEEEec-cchhhhcceeccccceEEEEecCCcchhheee
Confidence 34444456688899999999999996 789999999999999999 67788888889999999999988643 5666
Q ss_pred EECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCC
Q 007411 375 ASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS 454 (604)
Q Consensus 375 ~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~ 454 (604)
|+.||.|.+|+. ...+++..+++|.+.|+.++++|.
T Consensus 103 ~sdDG~i~iw~~--------------------------------------------~~W~~~~slK~H~~~Vt~lsiHPS 138 (362)
T KOG0294|consen 103 GSDDGHIIIWRV--------------------------------------------GSWELLKSLKAHKGQVTDLSIHPS 138 (362)
T ss_pred ecCCCcEEEEEc--------------------------------------------CCeEEeeeecccccccceeEecCC
Confidence 666555555554 444566777889999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCccccc
Q 007411 455 NRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAG 534 (604)
Q Consensus 455 ~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 534 (604)
+++-++.+.|+.+++||+-.++....... ....+.+.|+|.|.+|+++..+ .|-+|.+.+......+. ...
T Consensus 139 ~KLALsVg~D~~lr~WNLV~Gr~a~v~~L--~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~------~~~ 209 (362)
T KOG0294|consen 139 GKLALSVGGDQVLRTWNLVRGRVAFVLNL--KNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIE------NPK 209 (362)
T ss_pred CceEEEEcCCceeeeehhhcCccceeecc--CCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhh------ccc
Confidence 99999999999999999988776655543 3334559999999999888755 58899887654332211 112
Q ss_pred ceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEec-CCCCEEEEEeCCCcEEEeC
Q 007411 535 YACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHP-LEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 535 ~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp-~~~~~l~tgg~DG~I~vWD 604 (604)
.+.++.|- ++..|++|..|+.|.+||..+..++..+.+|...|-++.+.. .+..+|+|+|+||.|+|||
T Consensus 210 r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd 279 (362)
T KOG0294|consen 210 RILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWD 279 (362)
T ss_pred cceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEE
Confidence 33344443 567899999999999999999999999999999999998432 2567999999999999997
No 75
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=4.6e-25 Score=218.87 Aligned_cols=256 Identities=21% Similarity=0.374 Sum_probs=221.9
Q ss_pred cccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECC
Q 007411 299 CYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD 378 (604)
Q Consensus 299 ~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~D 378 (604)
++...+++.+|+||+..|+.+.|+|+ ...+++++.|-.|+||.. ....+......|..+|+.+..+|.|.+|++++.|
T Consensus 247 d~~s~q~l~~~~Gh~kki~~v~~~~~-~~~v~~aSad~~i~vws~-~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d 324 (506)
T KOG0289|consen 247 DKPSNQILATLKGHTKKITSVKFHKD-LDTVITASADEIIRVWSV-PLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASND 324 (506)
T ss_pred ecchhhhhhhccCcceEEEEEEeccc-hhheeecCCcceEEeecc-ccccCccccccccccceeeeeccCCcEEEEecCC
Confidence 34556789999999999999999999 899999999999999999 4555677788999999999999999999999999
Q ss_pred CcEEEEECCCCcEEEEeeCCC---cceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCC
Q 007411 379 KNIKYWDTETGQVIRTFSTGK---IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSN 455 (604)
Q Consensus 379 g~I~vWD~~t~~~i~~~~~~~---~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~ 455 (604)
++..+.|++++.++....... ...+..|+|++ .+|.+|..|+.|++||+.++..+..|.+|.++|..|.|+.+|
T Consensus 325 ~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg---Lifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENG 401 (506)
T KOG0289|consen 325 GTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG---LIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENG 401 (506)
T ss_pred ceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc---eEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCc
Confidence 999999999999988776542 24567777755 789999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccc
Q 007411 456 RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGY 535 (604)
Q Consensus 456 ~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 535 (604)
-+|+++++|+.|++||+|..+..+.+.......+.+++|.+.|.+|+.++.+=+|++++-.+. .......+..| .+.
T Consensus 402 Y~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k-~W~~~~~~~~~--sg~ 478 (506)
T KOG0289|consen 402 YWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTK-SWTEIKELADH--SGL 478 (506)
T ss_pred eEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccc-cceeeehhhhc--ccc
Confidence 999999999999999999999998888777778999999999999999987777777764332 23333444444 467
Q ss_pred eEEEEEcCCCCEEEEEcCCCcEEEEeC
Q 007411 536 ACQVNFSPDGRFVMSGDGEGKCWFWDW 562 (604)
Q Consensus 536 v~~l~~spdg~~L~sgs~dG~I~iwd~ 562 (604)
.+.+.|....+++++++.|..++++.+
T Consensus 479 st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 479 STGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred cceeeecccceEEeeccchhheEEeec
Confidence 788999999999999999999888754
No 76
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=3.6e-25 Score=242.10 Aligned_cols=285 Identities=21% Similarity=0.390 Sum_probs=227.5
Q ss_pred ecCC-CCCeEEEEEcCCCCCEEEEEE--CCCcEEEEecCC-----------CCeeeEEecCCCCceeeEEEccCCCEEEE
Q 007411 309 WSGH-TKGVSAIRFFPKYGHLILSAG--MDTKVKIWDVVN-----------SGKCMRTYMGHSKAVRDISFCNDGTKFLT 374 (604)
Q Consensus 309 l~gH-~~~V~~l~fsp~~g~~L~sgs--~Dg~I~IWd~~~-----------~~~~~~~~~~h~~~V~~l~fspdg~~L~s 374 (604)
|-+| ...|.+|..+|+ +..++||+ .||.++||+... -.+.+.+...|.+.|+|+.|++||.+||+
T Consensus 8 wv~H~~~~IfSIdv~pd-g~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAs 86 (942)
T KOG0973|consen 8 WVNHNEKSIFSIDVHPD-GVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLAS 86 (942)
T ss_pred ccccCCeeEEEEEecCC-ceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEee
Confidence 4455 566999999999 99999999 999999998731 13456677789999999999999999999
Q ss_pred EECCCcEEEEECCC------------------CcEEEEeeCC-CcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCce
Q 007411 375 ASYDKNIKYWDTET------------------GQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI 435 (604)
Q Consensus 375 ~s~Dg~I~vWD~~t------------------~~~i~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~ 435 (604)
|+.|+.|.||.... .+++..+..+ ..+.-++|.|+ ..++++++.|++|.+|+.++.+.
T Consensus 87 GSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~---~~~lvS~s~DnsViiwn~~tF~~ 163 (942)
T KOG0973|consen 87 GSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD---DSLLVSVSLDNSVIIWNAKTFEL 163 (942)
T ss_pred ccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC---ccEEEEecccceEEEEcccccee
Confidence 99999999998773 1233444332 23344556653 37999999999999999999999
Q ss_pred EEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCC-----CCcccEEEEcCCCCEEEEEEc----
Q 007411 436 TQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPH-----MHSMPSISLHPNTNWLAAQSL---- 506 (604)
Q Consensus 436 ~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~-----~~~v~~l~~sp~g~~l~s~s~---- 506 (604)
+..+.+|.+.|..+.|.|-|++|++-++|++|+||.+..-...+.+..+. ...+..+.|+|||.+|++...
T Consensus 164 ~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~ 243 (942)
T KOG0973|consen 164 LKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGG 243 (942)
T ss_pred eeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCC
Confidence 99999999999999999999999999999999999987766777665443 334778999999999998642
Q ss_pred CCeEEEEEcCCceeecccccccCcccccceEEEEEcCC-----CC------------EEEEEcCCCcEEEEeCCCCeeEE
Q 007411 507 DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPD-----GR------------FVMSGDGEGKCWFWDWKSCKVFR 569 (604)
Q Consensus 507 Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spd-----g~------------~L~sgs~dG~I~iwd~~t~~~~~ 569 (604)
-..+.|.+-.+. ..-..+.|| ..++.++.|+|. .+ .+|+|+.|++|.||.....+++.
T Consensus 244 ~~~~~IieR~tW---k~~~~LvGH--~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~ 318 (942)
T KOG0973|consen 244 KSTIAIIERGTW---KVDKDLVGH--SAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF 318 (942)
T ss_pred cceeEEEecCCc---eeeeeeecC--CCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence 245667665332 223567788 467888999882 11 67899999999999988877766
Q ss_pred EEe-cCCCcEEEEEEecCCCCEEEEEeCCCcEEEe
Q 007411 570 TLK-CHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 603 (604)
Q Consensus 570 ~l~-~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vW 603 (604)
.+. -....|.+++|+| ++..|+.|+.||+|.+.
T Consensus 319 vi~~lf~~SI~DmsWsp-dG~~LfacS~DGtV~~i 352 (942)
T KOG0973|consen 319 VIHNLFNKSIVDMSWSP-DGFSLFACSLDGTVALI 352 (942)
T ss_pred hhhhhhcCceeeeeEcC-CCCeEEEEecCCeEEEE
Confidence 554 2356899999999 78899999999999875
No 77
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=4.4e-25 Score=238.61 Aligned_cols=262 Identities=23% Similarity=0.411 Sum_probs=218.4
Q ss_pred CCCCcccCcceeEE-ecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEE
Q 007411 295 ANDHCYIPKRLVHT-WSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFL 373 (604)
Q Consensus 295 ~~~~~~~p~~~i~t-l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~ 373 (604)
...|+-.+...+.+ +.||.+.|.++++..- +.+|++|+.|.+++|||+ .++.|..++.+|...|.++... ...++
T Consensus 230 l~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~-~~~lvsgS~D~t~rvWd~-~sg~C~~~l~gh~stv~~~~~~--~~~~~ 305 (537)
T KOG0274|consen 230 LHLWDLNNGYLILTRLVGHFGGVWGLAFPSG-GDKLVSGSTDKTERVWDC-STGECTHSLQGHTSSVRCLTID--PFLLV 305 (537)
T ss_pred eEEeecccceEEEeeccCCCCCceeEEEecC-CCEEEEEecCCcEEeEec-CCCcEEEEecCCCceEEEEEcc--CceEe
Confidence 34456667777777 9999999999999874 899999999999999997 8999999999999999999885 45788
Q ss_pred EEECCCcEEEEECCCCcEEEEeeC-CCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEe
Q 007411 374 TASYDKNIKYWDTETGQVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFV 452 (604)
Q Consensus 374 s~s~Dg~I~vWD~~t~~~i~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~s 452 (604)
+|+.|.+|++|++.++.++..+.. ...+.++.+. +.++++|+.|+.|.+||+.+++++..+.+|.+.|.++.+.
T Consensus 306 sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~-----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~ 380 (537)
T KOG0274|consen 306 SGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD-----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVD 380 (537)
T ss_pred eccCCceEEEEeccCcceEEEeccccccEEEEEec-----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEec
Confidence 899999999999999999999984 4444455554 3689999999999999999999999999999999999886
Q ss_pred CCCCEEEEEeCCCcEEEEECCCC-eEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcc
Q 007411 453 DSNRRFVTSSDDKSLRVWEFGIP-VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHI 531 (604)
Q Consensus 453 p~~~~l~sgs~Dg~I~iwdl~~~-~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~ 531 (604)
.. ..+++|+.|++|++||+++. +++..+. .|..-+..+. ..+++|++++.|+.|++||..++..+...... +
T Consensus 381 ~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~-~h~~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~--~- 453 (537)
T KOG0274|consen 381 SE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQ-GHTSLVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEGR--H- 453 (537)
T ss_pred Cc-ceEEeeeeccceEeecCCchhhhhhhhc-CCcccccccc--cccceeEeccccccEEEeecccCceeeeeccC--C-
Confidence 55 89999999999999999999 7777664 3655564444 46889999999999999999888766444332 2
Q ss_pred cccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCC
Q 007411 532 VAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHE 575 (604)
Q Consensus 532 ~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~ 575 (604)
...+..+++. ...+++++.+|.+.+||++++++.+.+-.+.
T Consensus 454 -~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l~~~~ 494 (537)
T KOG0274|consen 454 -VGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTLLSTD 494 (537)
T ss_pred -cccEEEeecC--cceEEEEecCCeeEEEecccCchhhhhhhcc
Confidence 2445556554 4688899999999999999999988774333
No 78
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.94 E-value=1e-24 Score=212.49 Aligned_cols=273 Identities=14% Similarity=0.241 Sum_probs=220.3
Q ss_pred cccCcceeeccCccccccceeecCCCccccCCCCcccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecC
Q 007411 265 HVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVV 344 (604)
Q Consensus 265 ~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~ 344 (604)
...+..++..+.+.|...-.|..... .....+.||...|+|+.|+.+ |.+||||+++|.|+||..
T Consensus 71 sl~P~~~l~aTGGgDD~AflW~~~~g-------------e~~~eltgHKDSVt~~~Fshd-gtlLATGdmsG~v~v~~~- 135 (399)
T KOG0296|consen 71 SLHPNNNLVATGGGDDLAFLWDISTG-------------EFAGELTGHKDSVTCCSFSHD-GTLLATGDMSGKVLVFKV- 135 (399)
T ss_pred EeCCCCceEEecCCCceEEEEEccCC-------------cceeEecCCCCceEEEEEccC-ceEEEecCCCccEEEEEc-
Confidence 45557777788888888777755443 356788999999999999999 999999999999999999
Q ss_pred CCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCc-ceEEEEccCCCCCcEEEEEEcCC
Q 007411 345 NSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKI-PYVVKLNPDDDKQNILLAGMSDK 423 (604)
Q Consensus 345 ~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~-~~~~~~~~~~~~~~~lvsg~~dg 423 (604)
.++.....+...-..|.-+.|+|.+..|+.|+.||.|-+|.+.++...+.+..+.. ..+-.|.|+ +..+++|..||
T Consensus 136 stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pd---GKr~~tgy~dg 212 (399)
T KOG0296|consen 136 STGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPD---GKRILTGYDDG 212 (399)
T ss_pred ccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCC---CceEEEEecCc
Confidence 57777777766677888999999999999999999999999999877777766443 345667775 46799999999
Q ss_pred eEEEEeCCCCceEEEEcC------c---------------------------------------------CCceeEEEEe
Q 007411 424 KIVQWDMNTKEITQEYDQ------H---------------------------------------------LGAVNTITFV 452 (604)
Q Consensus 424 ~I~iwD~~s~~~~~~~~~------h---------------------------------------------~~~V~~i~~s 452 (604)
+|++|++.++.++..+.+ + ...+.|+.+.
T Consensus 213 ti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~ 292 (399)
T KOG0296|consen 213 TIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESI 292 (399)
T ss_pred eEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhc
Confidence 999999999988776541 0 0011122222
Q ss_pred ---CCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccC
Q 007411 453 ---DSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAG 529 (604)
Q Consensus 453 ---p~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~ 529 (604)
..-.++++|+-||+|.|||+......... .|..+|..+.|.+ ..+|++++.+|.|+.||.+++... ..+.|
T Consensus 293 ~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c--~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~---~~y~G 366 (399)
T KOG0296|consen 293 PSSSKLPLAACGSVDGTIAIYDLAASTLRHIC--EHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLK---FTYTG 366 (399)
T ss_pred ccccccchhhcccccceEEEEecccchhheec--cCCCceEEEEEcC-cchheeeccCceEEeeeccccceE---EEEec
Confidence 22245788899999999999877665554 5888899999998 889999999999999999998765 55677
Q ss_pred cccccceEEEEEcCCCCEEEEEcCCCcEEEEeCC
Q 007411 530 HIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 563 (604)
Q Consensus 530 ~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~ 563 (604)
| ...|.+++++|+++++++++.|++.+||+..
T Consensus 367 H--~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 367 H--QMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred C--chheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 7 4668889999999999999999999999864
No 79
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=4.3e-24 Score=213.59 Aligned_cols=283 Identities=18% Similarity=0.291 Sum_probs=230.9
Q ss_pred CCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCC-CeeeEEecCCCCceeeEEEccCCC-EEEEEECCCcEEEEECCCCc
Q 007411 313 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNS-GKCMRTYMGHSKAVRDISFCNDGT-KFLTASYDKNIKYWDTETGQ 390 (604)
Q Consensus 313 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~-~~~~~~~~~h~~~V~~l~fspdg~-~L~s~s~Dg~I~vWD~~t~~ 390 (604)
.++|++|.|+|. ..+|++|+.||+++||.+... ...++.+.--..+|.+.+|.|+|. .+++++....+..||+.+.+
T Consensus 213 ~~~I~sv~FHp~-~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 213 HGGITSVQFHPT-APLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred cCCceEEEecCC-CceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 578999999999 999999999999999998322 234556666678999999999998 89999999999999999887
Q ss_pred EEEEeeCCC----cceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCc
Q 007411 391 VIRTFSTGK----IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKS 466 (604)
Q Consensus 391 ~i~~~~~~~----~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~ 466 (604)
....-.... ......+++++ ++|+..+..|.|.+....+++.+..++ ..+.|..++|+.+++.|++++.+|.
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~---~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~Ge 367 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDS---NFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGE 367 (514)
T ss_pred cccccCCCCcccchhheeEecCCC---CeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCce
Confidence 654432221 22234444443 689999999999999999999998886 6788999999999999999999999
Q ss_pred EEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCcee---ecccccccCcccccceEEEEEcC
Q 007411 467 LRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQ---LNKKKRFAGHIVAGYACQVNFSP 543 (604)
Q Consensus 467 I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~---~~~~~~~~~~~~~~~v~~l~~sp 543 (604)
|.+||++...++..+.....-.-+++|.++++.|||+|+..|.|.|||..+... ..+++.+.. ....|+++.|++
T Consensus 368 V~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dN--Ltt~Itsl~Fn~ 445 (514)
T KOG2055|consen 368 VYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDN--LTTAITSLQFNH 445 (514)
T ss_pred EEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhh--hheeeeeeeeCc
Confidence 999999999999888765555667888889999999999999999999654322 122222222 245688999999
Q ss_pred CCCEEEEEcC--CCcEEEEeCCCCeeEEEEecCC---CcEEEEEEecCCCCEEEEEeCCCcEEEe
Q 007411 544 DGRFVMSGDG--EGKCWFWDWKSCKVFRTLKCHE---GVCIGCEWHPLEQSKVATCGWDGLIKYW 603 (604)
Q Consensus 544 dg~~L~sgs~--dG~I~iwd~~t~~~~~~l~~h~---~~V~~v~~sp~~~~~l~tgg~DG~I~vW 603 (604)
|+++|+.++. ...+++-.+.+......+.... +.|+|++|+| ++.+|+.|..+|.|.+|
T Consensus 446 d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP-~sG~lAvGNe~grv~l~ 509 (514)
T KOG2055|consen 446 DAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSP-NSGYLAVGNEAGRVHLF 509 (514)
T ss_pred chhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecC-CCceEEeecCCCceeeE
Confidence 9999988774 6689999999998888776543 4689999999 77899999999999999
No 80
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.7e-25 Score=213.76 Aligned_cols=292 Identities=21% Similarity=0.374 Sum_probs=236.3
Q ss_pred cceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEE
Q 007411 303 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIK 382 (604)
Q Consensus 303 ~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~ 382 (604)
.++++.|.||..+|..++.... ..++.+++.|.+.+||.+ +++.|+.+|.||.+.|++|.|++.+.++++++.|++..
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~t-qpi~gtASADhTA~iWs~-Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taH 215 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADST-QPICGTASADHTARIWSL-ESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAH 215 (481)
T ss_pred EeehhhhcccccceeeehhhcC-CcceeecccccceeEEee-ccccceeeecccccceeeEEeccccceEEEccCCcchH
Confidence 4678889999999999998777 679999999999999999 79999999999999999999999999999999999999
Q ss_pred EEEC------CCC----------------------------------cEEEEeeCCCcceEEEEccCCCCCcEEEEEEcC
Q 007411 383 YWDT------ETG----------------------------------QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD 422 (604)
Q Consensus 383 vWD~------~t~----------------------------------~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~d 422 (604)
||.. ... .++..+.. +...+++..+.. .+..+++++.|
T Consensus 216 IW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltg-H~~vV~a~dWL~-gg~Q~vTaSWD 293 (481)
T KOG0300|consen 216 IWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTG-HRAVVSACDWLA-GGQQMVTASWD 293 (481)
T ss_pred HHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeec-cccceEehhhhc-Ccceeeeeecc
Confidence 9962 110 01122222 222223332222 34569999999
Q ss_pred CeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEE
Q 007411 423 KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLA 502 (604)
Q Consensus 423 g~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~ 502 (604)
.+..+||+.+++++..+.+|....+.++-+|..+++++.+.|.+.++||++..........+|...|+++.|..+. .++
T Consensus 294 RTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vV 372 (481)
T KOG0300|consen 294 RTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVV 372 (481)
T ss_pred ccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-cee
Confidence 9999999999999999999999999999999999999999999999999996665566667899999999998654 588
Q ss_pred EEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEE----EEecCCCcE
Q 007411 503 AQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFR----TLKCHEGVC 578 (604)
Q Consensus 503 s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~----~l~~h~~~V 578 (604)
+|+.|.+|++||+++.... +..+. ....+..++.+..+..|+.--.+..|++||+...++-+ .-++|...|
T Consensus 373 SgSDDrTvKvWdLrNMRsp--lATIR---tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV 447 (481)
T KOG0300|consen 373 SGSDDRTVKVWDLRNMRSP--LATIR---TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMV 447 (481)
T ss_pred ecCCCceEEEeeeccccCc--ceeee---cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceee
Confidence 9999999999999875322 12221 24667789999989999999999999999987654422 335899999
Q ss_pred EEEEEecCC-CCEEEEEeCCCcEEEeC
Q 007411 579 IGCEWHPLE-QSKVATCGWDGLIKYWD 604 (604)
Q Consensus 579 ~~v~~sp~~-~~~l~tgg~DG~I~vWD 604 (604)
.|++|.... -.-|++||.|..+.-|.
T Consensus 448 ~c~AW~eehp~cnLftcGFDR~v~gW~ 474 (481)
T KOG0300|consen 448 TCCAWLEEHPACNLFTCGFDRMVAGWK 474 (481)
T ss_pred eeeeccccCcccccccccccceeeeeE
Confidence 999998521 13589999999988874
No 81
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=3.6e-24 Score=232.32 Aligned_cols=236 Identities=17% Similarity=0.243 Sum_probs=182.7
Q ss_pred cceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCC-------eeeEEecCCCCceeeEEEccCCCE-EEE
Q 007411 303 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG-------KCMRTYMGHSKAVRDISFCNDGTK-FLT 374 (604)
Q Consensus 303 ~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~-------~~~~~~~~h~~~V~~l~fspdg~~-L~s 374 (604)
...+..+.+|.+.|.+|+|+|+.+.+|++|+.||+|+|||+...+ .++..+.+|...|.+++|+|++.. |++
T Consensus 64 ~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaS 143 (568)
T PTZ00420 64 KPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCS 143 (568)
T ss_pred CceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEE
Confidence 356789999999999999999767899999999999999995332 234567899999999999998875 568
Q ss_pred EECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEE----
Q 007411 375 ASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTIT---- 450 (604)
Q Consensus 375 ~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~---- 450 (604)
++.|++|+|||+++++.+..+.....+.++.|++++ .+|++++.|+.|++||+++++.+..+.+|.+.+.+..
T Consensus 144 gS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG---~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~ 220 (568)
T PTZ00420 144 SGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKG---NLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWID 220 (568)
T ss_pred EeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCC---CEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEee
Confidence 999999999999999988777666667777887754 6888899999999999999999999999988764433
Q ss_pred -EeCCCCEEEEEeCCC----cEEEEECCC-CeEEEEeecC-CCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecc
Q 007411 451 -FVDSNRRFVTSSDDK----SLRVWEFGI-PVVIKYISEP-HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNK 523 (604)
Q Consensus 451 -~sp~~~~l~sgs~Dg----~I~iwdl~~-~~~~~~~~~~-~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~ 523 (604)
|++++.+|++++.|+ .|+|||++. ..++..+... +...+......+++.++++|+.|+.|++|++..+. +..
T Consensus 221 ~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~ 299 (568)
T PTZ00420 221 GLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRK 299 (568)
T ss_pred eEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEe
Confidence 347888999988774 799999985 4445444321 22222333334568899999999999999997653 222
Q ss_pred cccccCcccccceEEEEEcCCC
Q 007411 524 KKRFAGHIVAGYACQVNFSPDG 545 (604)
Q Consensus 524 ~~~~~~~~~~~~v~~l~~spdg 545 (604)
+..+. ...+...++|.|+.
T Consensus 300 l~~~~---s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 300 VNEYK---SCSPFRSFGFLPKQ 318 (568)
T ss_pred ecccc---cCCCccceEEcccc
Confidence 22222 34556678898864
No 82
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.2e-24 Score=206.52 Aligned_cols=296 Identities=16% Similarity=0.268 Sum_probs=218.3
Q ss_pred ccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCC----CCeeeEEecCCCCceeeEEEccCCCEEEE-
Q 007411 300 YIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN----SGKCMRTYMGHSKAVRDISFCNDGTKFLT- 374 (604)
Q Consensus 300 ~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~----~~~~~~~~~~h~~~V~~l~fspdg~~L~s- 374 (604)
|.-+-.+.+|+||.+.|++++|+.+ |+.|+|++.|++|+||++.. ..++++.-- .-+.-+.+.|+||-+-++.
T Consensus 73 f~Hpl~~~~LKgH~~~vt~~~FsSd-GK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv-e~dhpT~V~FapDc~s~vv~ 150 (420)
T KOG2096|consen 73 FVHPLNVSVLKGHKKEVTDVAFSSD-GKKLATISGDRSIRLWDVRDFENKEHRCIRQNV-EYDHPTRVVFAPDCKSVVVS 150 (420)
T ss_pred cccchhhhhhhccCCceeeeEEcCC-CceeEEEeCCceEEEEecchhhhhhhhHhhccc-cCCCceEEEECCCcceEEEE
Confidence 3334456789999999999999999 99999999999999999842 112333221 1224578899998776554
Q ss_pred EECCCcEEEEECCCC---cEEE--------EeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcC
Q 007411 375 ASYDKNIKYWDTETG---QVIR--------TFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHL 443 (604)
Q Consensus 375 ~s~Dg~I~vWD~~t~---~~i~--------~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~ 443 (604)
+-...+|++|-+... .... .|...+...++.+-.- ++..+|++++.|..|.+|+++ |+.++.+....
T Consensus 151 ~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA-~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq 228 (420)
T KOG2096|consen 151 VKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIA-GNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQ 228 (420)
T ss_pred EccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeec-CCceEEEEecCCCcEEEEecC-Cceeeeecccc
Confidence 445567999876422 1111 1222233333333222 345789999999999999999 99999998888
Q ss_pred CceeEEEEeCCCCEEEEEeCCCcEEEEECCC---C--e---EEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEc
Q 007411 444 GAVNTITFVDSNRRFVTSSDDKSLRVWEFGI---P--V---VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYST 515 (604)
Q Consensus 444 ~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~---~--~---~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~ 515 (604)
..-+..+.+|+|+++++++---.|++|.+-- + + .... ..+|...|..++|+++...+++.+.||.++|||+
T Consensus 229 ~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~-LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdt 307 (420)
T KOG2096|consen 229 SSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFS-LKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDT 307 (420)
T ss_pred ccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhhe-eccchhheeeeeeCCCcceeEEEecCCcEEEeec
Confidence 8888899999999999999999999998621 1 1 1112 2478999999999999999999999999999998
Q ss_pred CCceee----cccccc--cCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEe-cCCCcEEEEEEecCCC
Q 007411 516 RERFQL----NKKKRF--AGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK-CHEGVCIGCEWHPLEQ 588 (604)
Q Consensus 516 ~~~~~~----~~~~~~--~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~-~h~~~V~~v~~sp~~~ 588 (604)
.-.... ..++.. .-+...+..+.+.++|.|+.|+.+. ...|.++..++|+.+..+. .|...|.+++|++ ++
T Consensus 308 dVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~-~g 385 (420)
T KOG2096|consen 308 DVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSS-DG 385 (420)
T ss_pred cceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecC-CC
Confidence 643322 111221 2223344556899999999988765 4479999999999887775 6999999999999 78
Q ss_pred CEEEEEeCCCcEEEe
Q 007411 589 SKVATCGWDGLIKYW 603 (604)
Q Consensus 589 ~~l~tgg~DG~I~vW 603 (604)
.+++||| |..+++.
T Consensus 386 ~~~atcG-dr~vrv~ 399 (420)
T KOG2096|consen 386 KYIATCG-DRYVRVI 399 (420)
T ss_pred cEEeeec-ceeeeee
Confidence 8999999 6666663
No 83
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.7e-25 Score=222.96 Aligned_cols=247 Identities=22% Similarity=0.337 Sum_probs=205.7
Q ss_pred eeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEcc-CCCEEEEEECCCcEEE
Q 007411 305 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCN-DGTKFLTASYDKNIKY 383 (604)
Q Consensus 305 ~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fsp-dg~~L~s~s~Dg~I~v 383 (604)
...++.-....|+++.|..| |.+|+.|+..|.|+|||+ ++...++.+.+|+.+|..+.|+| ++..|++|+.|+.+++
T Consensus 60 ~~k~~srFk~~v~s~~fR~D-G~LlaaGD~sG~V~vfD~-k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~ 137 (487)
T KOG0310|consen 60 VRKTFSRFKDVVYSVDFRSD-GRLLAAGDESGHVKVFDM-KSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKY 137 (487)
T ss_pred hhhhHHhhccceeEEEeecC-CeEEEccCCcCcEEEecc-ccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEE
Confidence 34455667788999999999 999999999999999996 77788899999999999999999 5667888999999999
Q ss_pred EECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCC-ceEEEEcCcCCceeEEEEeCCCCEEEEEe
Q 007411 384 WDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITFVDSNRRFVTSS 462 (604)
Q Consensus 384 WD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~-~~~~~~~~h~~~V~~i~~sp~~~~l~sgs 462 (604)
||+.+... ..--.++..++-+....+.+.+++++|+.||.|++||+++. ..+.++ .|..+|..+.+.|.|..|++++
T Consensus 138 ~d~s~a~v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAg 215 (487)
T KOG0310|consen 138 WDLSTAYV-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAG 215 (487)
T ss_pred EEcCCcEE-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcC
Confidence 99999886 33334555555444444455689999999999999999987 666666 5999999999999999999988
Q ss_pred CCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEc
Q 007411 463 DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 542 (604)
Q Consensus 463 ~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s 542 (604)
. ..|+|||+-++.........|...|+|+++..++..|++++.|+.|++||+.+-+.+... ...++|.+++.+
T Consensus 216 G-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~------~~~~pvLsiavs 288 (487)
T KOG0310|consen 216 G-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSW------KYPGPVLSIAVS 288 (487)
T ss_pred C-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEee------ecccceeeEEec
Confidence 5 679999998766555555558999999999999999999999999999997664433222 235778899999
Q ss_pred CCCCEEEEEcCCCcEEEEeC
Q 007411 543 PDGRFVMSGDGEGKCWFWDW 562 (604)
Q Consensus 543 pdg~~L~sgs~dG~I~iwd~ 562 (604)
|+++.++.|-.+|.+.+-+.
T Consensus 289 ~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 289 PDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred CCCceEEEecccceeeeehh
Confidence 99999999999999888744
No 84
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=1.1e-23 Score=227.45 Aligned_cols=230 Identities=16% Similarity=0.218 Sum_probs=180.3
Q ss_pred EecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCC------eeeEEecCCCCceeeEEEccCC-CEEEEEECCCc
Q 007411 308 TWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG------KCMRTYMGHSKAVRDISFCNDG-TKFLTASYDKN 380 (604)
Q Consensus 308 tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~------~~~~~~~~h~~~V~~l~fspdg-~~L~s~s~Dg~ 380 (604)
.+.||.+.|++++|+|.++++|++|+.|++|+|||+...+ .++..+.+|...|.+++|+|++ ++|++++.|++
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 4789999999999999438899999999999999994332 3577889999999999999975 69999999999
Q ss_pred EEEEECCCCcEEEEeeCC-CcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCc-eeEEEEeCCCCEE
Q 007411 381 IKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGA-VNTITFVDSNRRF 458 (604)
Q Consensus 381 I~vWD~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~-V~~i~~sp~~~~l 458 (604)
|+|||+.+++.+..+..+ ..+.++.|++++ .+|++|+.|+.|++||+++++.+..+.+|.+. +..+.|.+++..|
T Consensus 150 VrIWDl~tg~~~~~l~~h~~~V~sla~spdG---~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~i 226 (493)
T PTZ00421 150 VNVWDVERGKAVEVIKCHSDQITSLEWNLDG---SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLI 226 (493)
T ss_pred EEEEECCCCeEEEEEcCCCCceEEEEEECCC---CEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeE
Confidence 999999999988887643 446677787754 68999999999999999999999999888865 4567888888888
Q ss_pred EEEe----CCCcEEEEECCCCeE-EEEeecCCCCcccEEEEcCCCCEEEEEE-cCCeEEEEEcCCceeecccccccCccc
Q 007411 459 VTSS----DDKSLRVWEFGIPVV-IKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFAGHIV 532 (604)
Q Consensus 459 ~sgs----~Dg~I~iwdl~~~~~-~~~~~~~~~~~v~~l~~sp~g~~l~s~s-~Dg~I~iwd~~~~~~~~~~~~~~~~~~ 532 (604)
++++ .|+.|++||++.... ...........+....|++++++|++++ .|+.|++|++.++....... +. .
T Consensus 227 vt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~-~~---s 302 (493)
T PTZ00421 227 ITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSS-YS---S 302 (493)
T ss_pred EEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEee-cc---C
Confidence 7664 478999999987543 3322222334455667899999999887 49999999998765443211 11 1
Q ss_pred ccceEEEEEcCC
Q 007411 533 AGYACQVNFSPD 544 (604)
Q Consensus 533 ~~~v~~l~~spd 544 (604)
......++|.|.
T Consensus 303 ~~~~~g~~~~pk 314 (493)
T PTZ00421 303 VEPHKGLCMMPK 314 (493)
T ss_pred CCCCcceEeccc
Confidence 233455777774
No 85
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=2.7e-25 Score=223.50 Aligned_cols=278 Identities=16% Similarity=0.319 Sum_probs=228.6
Q ss_pred CCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCC--eeeEEec--CCCCceeeEEEccCCCEEEEEECCCcEEEEEC
Q 007411 311 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG--KCMRTYM--GHSKAVRDISFCNDGTKFLTASYDKNIKYWDT 386 (604)
Q Consensus 311 gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~--~~~~~~~--~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~ 386 (604)
.|..-|.++..+.. .+.++||+. |.|+|||+...+ .++..+. ....-|+++.+.|||+.|++|++-.+|.|||+
T Consensus 417 ~HGEvVcAvtIS~~-trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 417 AHGEVVCAVTISNP-TRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred ccCcEEEEEEecCC-cceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence 68888999999988 789999886 789999995433 2333333 23567999999999999999999999999999
Q ss_pred CCCcEEEEeeCC-Ccc--eEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeC
Q 007411 387 ETGQVIRTFSTG-KIP--YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD 463 (604)
Q Consensus 387 ~t~~~i~~~~~~-~~~--~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~ 463 (604)
............ ..+ +.+.++++. ++.++++.||.|.|||+.+..+++.|.+|...+.||.++++|..|.+|+-
T Consensus 495 AapTprikaeltssapaCyALa~spDa---kvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGl 571 (705)
T KOG0639|consen 495 AAPTPRIKAELTSSAPACYALAISPDA---KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGL 571 (705)
T ss_pred cCCCcchhhhcCCcchhhhhhhcCCcc---ceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCC
Confidence 866543332222 223 344455543 78999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcC
Q 007411 464 DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP 543 (604)
Q Consensus 464 Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp 543 (604)
|.+||.||++.+..+... .....|.++..+|++.+|++|-.++.+.|....... .+.-|.+...|.++.|++
T Consensus 572 DntvRcWDlregrqlqqh--dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~------kyqlhlheScVLSlKFa~ 643 (705)
T KOG0639|consen 572 DNTVRCWDLREGRQLQQH--DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE------KYQLHLHESCVLSLKFAY 643 (705)
T ss_pred ccceeehhhhhhhhhhhh--hhhhhheecccCCCccceeeecccCcEEEEecCCcc------ceeecccccEEEEEEecc
Confidence 999999999988766543 355679999999999999999999999998775432 233344577899999999
Q ss_pred CCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEe
Q 007411 544 DGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 603 (604)
Q Consensus 544 dg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vW 603 (604)
.|+++++.+.|..+..|...-|..+...+ ....|.+|.++. +.++|+||+.|..-.||
T Consensus 644 cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~-ddkyIVTGSGdkkATVY 701 (705)
T KOG0639|consen 644 CGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISF-DDKYIVTGSGDKKATVY 701 (705)
T ss_pred cCceeeecCchhhhhhccCccccceeecc-ccCcceeeeecc-CceEEEecCCCcceEEE
Confidence 99999999999999999999998887766 456799999998 77899999999887776
No 86
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.93 E-value=5.7e-26 Score=228.36 Aligned_cols=249 Identities=18% Similarity=0.332 Sum_probs=210.5
Q ss_pred CCeeeEEecCCCCceeeEEEcc-CCCEEEEEECCCcEEEEECCC-CcEEEEeeCCCc-ceEEEEccCCCCCcEEEEEEcC
Q 007411 346 SGKCMRTYMGHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTET-GQVIRTFSTGKI-PYVVKLNPDDDKQNILLAGMSD 422 (604)
Q Consensus 346 ~~~~~~~~~~h~~~V~~l~fsp-dg~~L~s~s~Dg~I~vWD~~t-~~~i~~~~~~~~-~~~~~~~~~~~~~~~lvsg~~d 422 (604)
..+.+.++.+|+..|+++.|.| .+.+|++++.|+.|+||++.. +.++++|..+.. +..++|+..+ ..|++++.|
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g---~~fLS~sfD 279 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCG---TSFLSASFD 279 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccC---Ceeeeeecc
Confidence 4567788999999999999999 899999999999999999976 889999876543 4456666654 579999999
Q ss_pred CeEEEEeCCCCceEEEEcCcCCceeEEEEeCCC-CEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEE
Q 007411 423 KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSN-RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWL 501 (604)
Q Consensus 423 g~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~-~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l 501 (604)
+.|++||+++|+++..+. ....++|+.|+|++ +.|++|+.|+.|+.||+++++.+..+. .|.+.|..+.|-++|+.+
T Consensus 280 ~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd-~hLg~i~~i~F~~~g~rF 357 (503)
T KOG0282|consen 280 RFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD-RHLGAILDITFVDEGRRF 357 (503)
T ss_pred eeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH-hhhhheeeeEEccCCceE
Confidence 999999999999999885 45678999999998 889999999999999999999776664 488899999999999999
Q ss_pred EEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCC---eeEEEEecCC--C
Q 007411 502 AAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC---KVFRTLKCHE--G 576 (604)
Q Consensus 502 ~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~---~~~~~l~~h~--~ 576 (604)
++.+.|+.++||+.+....+........| ...++..+|++.++++-+.|+.|.++.+... .....+.+|. +
T Consensus 358 issSDdks~riWe~~~~v~ik~i~~~~~h----smP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaG 433 (503)
T KOG0282|consen 358 ISSSDDKSVRIWENRIPVPIKNIADPEMH----TMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAG 433 (503)
T ss_pred eeeccCccEEEEEcCCCccchhhcchhhc----cCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccC
Confidence 99999999999998876655444333333 3447899999999999999999999986532 2345566775 4
Q ss_pred cEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007411 577 VCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 577 ~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
.-..|.|+| ++.+|++|+.||.+.+||
T Consensus 434 ys~~v~fSp-DG~~l~SGdsdG~v~~wd 460 (503)
T KOG0282|consen 434 YSCQVDFSP-DGRTLCSGDSDGKVNFWD 460 (503)
T ss_pred ceeeEEEcC-CCCeEEeecCCccEEEee
Confidence 567899999 888999999999999998
No 87
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=1.7e-23 Score=227.05 Aligned_cols=247 Identities=11% Similarity=0.178 Sum_probs=187.6
Q ss_pred EECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccC-CCEEEEEECCCcEEEEECCCCc--------EEEEeeC-CCcc
Q 007411 332 AGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCND-GTKFLTASYDKNIKYWDTETGQ--------VIRTFST-GKIP 401 (604)
Q Consensus 332 gs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspd-g~~L~s~s~Dg~I~vWD~~t~~--------~i~~~~~-~~~~ 401 (604)
|+.++.|++|+. .....+..+.+|...|.+++|+|+ +.+|++|+.|+.|+|||+.++. ++..+.. ...+
T Consensus 50 GG~~gvI~L~~~-~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V 128 (568)
T PTZ00420 50 GGLIGAIRLENQ-MRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI 128 (568)
T ss_pred CCceeEEEeeec-CCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence 667899999998 455778889999999999999996 7899999999999999998642 2223332 2345
Q ss_pred eEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEe
Q 007411 402 YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYI 481 (604)
Q Consensus 402 ~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~ 481 (604)
.++.|+|.. ..++++++.|+.|++||+++++.+..+. |...|.+++|+++|.+|++++.|+.|+|||++++..+..+
T Consensus 129 ~sVaf~P~g--~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl 205 (568)
T PTZ00420 129 SIIDWNPMN--YYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSF 205 (568)
T ss_pred EEEEECCCC--CeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence 567777754 3567899999999999999998877775 6678999999999999999999999999999999888766
Q ss_pred ecCCCCcccE-----EEEcCCCCEEEEEEcCC----eEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEc
Q 007411 482 SEPHMHSMPS-----ISLHPNTNWLAAQSLDN----QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD 552 (604)
Q Consensus 482 ~~~~~~~v~~-----l~~sp~g~~l~s~s~Dg----~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs 552 (604)
. .|.+.+.+ ..|++++.+|++++.++ +|+|||++...... .....+...+.+......++|.++++|+
T Consensus 206 ~-gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl--~~~~ld~~~~~L~p~~D~~tg~l~lsGk 282 (568)
T PTZ00420 206 H-IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSAL--VTMSIDNASAPLIPHYDESTGLIYLIGK 282 (568)
T ss_pred e-cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCce--EEEEecCCccceEEeeeCCCCCEEEEEE
Confidence 4 46655433 23458889999988774 79999998633221 1222222233333344456699999999
Q ss_pred CCCcEEEEeCCCCeeEEEEe--cCCCcEEEEEEecC
Q 007411 553 GEGKCWFWDWKSCKVFRTLK--CHEGVCIGCEWHPL 586 (604)
Q Consensus 553 ~dG~I~iwd~~t~~~~~~l~--~h~~~V~~v~~sp~ 586 (604)
.|+.|++|++..+.+ ..+. .+..++.+++|.|.
T Consensus 283 GD~tIr~~e~~~~~~-~~l~~~~s~~p~~g~~f~Pk 317 (568)
T PTZ00420 283 GDGNCRYYQHSLGSI-RKVNEYKSCSPFRSFGFLPK 317 (568)
T ss_pred CCCeEEEEEccCCcE-EeecccccCCCccceEEccc
Confidence 999999999987643 2232 25568889999994
No 88
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=4.7e-24 Score=211.78 Aligned_cols=280 Identities=19% Similarity=0.315 Sum_probs=235.0
Q ss_pred CCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEE
Q 007411 313 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVI 392 (604)
Q Consensus 313 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i 392 (604)
..+|+++...|. ...+++|+.|..+.++|. ...+.+.+|.||...|+.+.|+++...+++++.|..|+||........
T Consensus 219 ~pgi~ald~~~s-~~~ilTGG~d~~av~~d~-~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~ 296 (506)
T KOG0289|consen 219 TPGITALDIIPS-SSKILTGGEDKTAVLFDK-PSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEP 296 (506)
T ss_pred CCCeeEEeecCC-CCcceecCCCCceEEEec-chhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCc
Confidence 456888888887 789999999999999999 788999999999999999999999999999999999999998776654
Q ss_pred EEeeC-CCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcC--cCCceeEEEEeCCCCEEEEEeCCCcEEE
Q 007411 393 RTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ--HLGAVNTITFVDSNRRFVTSSDDKSLRV 469 (604)
Q Consensus 393 ~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~--h~~~V~~i~~sp~~~~l~sgs~Dg~I~i 469 (604)
..... ...+..+..++.+ .+|++++.|+...+.|++++..+..... ..-.++++.|+|||.+|.+|..||.|+|
T Consensus 297 ~~~~~h~~~V~~ls~h~tg---eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vki 373 (506)
T KOG0289|consen 297 TSSRPHEEPVTGLSLHPTG---EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKI 373 (506)
T ss_pred cccccccccceeeeeccCC---cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEE
Confidence 44433 3344556666654 6999999999999999999987776643 2345899999999999999999999999
Q ss_pred EECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEE
Q 007411 470 WEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVM 549 (604)
Q Consensus 470 wdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~ 549 (604)
||+..+.....+. +|.++|..+.|+.+|.||++++.|+.|++||++..... +.+.... ...+.++.|.+.|.+|+
T Consensus 374 wdlks~~~~a~Fp-ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~---kt~~l~~-~~~v~s~~fD~SGt~L~ 448 (506)
T KOG0289|consen 374 WDLKSQTNVAKFP-GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNF---KTIQLDE-KKEVNSLSFDQSGTYLG 448 (506)
T ss_pred EEcCCccccccCC-CCCCceeEEEeccCceEEEEEecCCeEEEEEehhhccc---ceeeccc-cccceeEEEcCCCCeEE
Confidence 9999988777765 59999999999999999999999999999999875433 2332222 12577899999999999
Q ss_pred EEcCCCcEEEEeC--CCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEe
Q 007411 550 SGDGEGKCWFWDW--KSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 603 (604)
Q Consensus 550 sgs~dG~I~iwd~--~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vW 603 (604)
+++.+=.|++++- +++.++..+..|.+..+++.|.. ...+++++|.|..++++
T Consensus 449 ~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~-~aq~l~s~smd~~l~~~ 503 (506)
T KOG0289|consen 449 IAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGE-HAQYLASTSMDAILRLY 503 (506)
T ss_pred eecceeEEEEEecccccceeeehhhhcccccceeeecc-cceEEeeccchhheEEe
Confidence 9988877777763 35778888888998889999987 67799999999999886
No 89
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=5.5e-24 Score=203.63 Aligned_cols=273 Identities=18% Similarity=0.263 Sum_probs=220.5
Q ss_pred CCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEE
Q 007411 313 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVI 392 (604)
Q Consensus 313 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i 392 (604)
...|+.|.|+|. +..|+.++.||++++|++. .. .++....|..++.+++|.+ ...+++|+.||.|+++|+.++...
T Consensus 13 ~d~IS~v~f~~~-~~~LLvssWDgslrlYdv~-~~-~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~ 88 (323)
T KOG1036|consen 13 EDGISSVKFSPS-SSDLLVSSWDGSLRLYDVP-AN-SLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED 88 (323)
T ss_pred hhceeeEEEcCc-CCcEEEEeccCcEEEEecc-ch-hhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCcce
Confidence 467999999988 6777777899999999993 33 3444446999999999987 467999999999999999999988
Q ss_pred EEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEEC
Q 007411 393 RTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEF 472 (604)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl 472 (604)
..-.+.....++...+.. ..+++|+.|++|++||.+.......+.. ...|.|+... ++.|++|+.+..|.+||+
T Consensus 89 ~igth~~~i~ci~~~~~~---~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~--g~~LvVg~~~r~v~iyDL 162 (323)
T KOG1036|consen 89 QIGTHDEGIRCIEYSYEV---GCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVS--GNRLVVGTSDRKVLIYDL 162 (323)
T ss_pred eeccCCCceEEEEeeccC---CeEEEcccCccEEEEecccccccccccc-CceEEEEecc--CCEEEEeecCceEEEEEc
Confidence 888788888888888644 5799999999999999998666666643 4488888875 678999999999999999
Q ss_pred CCCeEEEEe-ecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCc-eeecccccccCcc-------cccceEEEEEcC
Q 007411 473 GIPVVIKYI-SEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRER-FQLNKKKRFAGHI-------VAGYACQVNFSP 543 (604)
Q Consensus 473 ~~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~-~~~~~~~~~~~~~-------~~~~v~~l~~sp 543 (604)
++.....+. .......+.|+++-|++.-+++++-||.|.+=.+... ....+...|+.|. ..-+|.+++|+|
T Consensus 163 Rn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp 242 (323)
T KOG1036|consen 163 RNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP 242 (323)
T ss_pred ccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecc
Confidence 986554432 2345667999999999888999999999988655543 1122223344332 235688999999
Q ss_pred CCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeC
Q 007411 544 DGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW 596 (604)
Q Consensus 544 dg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~ 596 (604)
-...|++|+.||.|.+||+.+.+.+..+......|.+++|+. ++..||+++.
T Consensus 243 ~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~-dG~~LAia~s 294 (323)
T KOG1036|consen 243 IHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSM-DGSLLAIASS 294 (323)
T ss_pred ccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEecc-CCCeEEEEec
Confidence 999999999999999999999999999987778899999998 7788888874
No 90
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.93 E-value=1.5e-25 Score=208.05 Aligned_cols=253 Identities=22% Similarity=0.358 Sum_probs=211.1
Q ss_pred cceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEE
Q 007411 303 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIK 382 (604)
Q Consensus 303 ~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~ 382 (604)
..-+-+|.||.+.|.+..+..+ ..+.++++.|-+-+|||. -++..+.++. |..-|..++|+.|.++|++|+.+..++
T Consensus 49 gdwigtfeghkgavw~~~l~~n-a~~aasaaadftakvw~a-~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllr 125 (334)
T KOG0278|consen 49 GDWIGTFEGHKGAVWSATLNKN-ATRAASAAADFTAKVWDA-VTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLR 125 (334)
T ss_pred CCcEEeeeccCcceeeeecCch-hhhhhhhcccchhhhhhh-hhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhh
Confidence 3457899999999999999988 888999999999999999 5777777774 899999999999999999999999999
Q ss_pred EEECCCCcE-EEEeeC-CCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEE
Q 007411 383 YWDTETGQV-IRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVT 460 (604)
Q Consensus 383 vWD~~t~~~-i~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~s 460 (604)
|+|++..+. ...+.. ...+..+.|+..+ +.|++...|+.|++||.+++..++++. ...+|+++.++++|++|.+
T Consensus 126 vfdln~p~App~E~~ghtg~Ir~v~wc~eD---~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTi 201 (334)
T KOG0278|consen 126 VFDLNRPKAPPKEISGHTGGIRTVLWCHED---KCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTI 201 (334)
T ss_pred hhhccCCCCCchhhcCCCCcceeEEEeccC---ceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEE
Confidence 999986543 333332 2233344444432 568888999999999999999999986 6788999999999976655
Q ss_pred EeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEE
Q 007411 461 SSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVN 540 (604)
Q Consensus 461 gs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~ 540 (604)
+ ..++|.+||..+...++... ....|.+.+++|+...+++|+.|..++.||..++..+... .++| .++|.++.
T Consensus 202 a-~gssV~Fwdaksf~~lKs~k--~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~--nkgh--~gpVhcVr 274 (334)
T KOG0278|consen 202 A-YGSSVKFWDAKSFGLLKSYK--MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY--NKGH--FGPVHCVR 274 (334)
T ss_pred e-cCceeEEeccccccceeecc--CccccccccccCCCceEEecCcceEEEEEeccCCceeeec--ccCC--CCceEEEE
Confidence 4 56889999999988888875 4457899999999999999999999999999998776542 3566 58899999
Q ss_pred EcCCCCEEEEEcCCCcEEEEeCCCCeeEE
Q 007411 541 FSPDGRFVMSGDGEGKCWFWDWKSCKVFR 569 (604)
Q Consensus 541 ~spdg~~L~sgs~dG~I~iwd~~t~~~~~ 569 (604)
|+|+|...++|+.||+|+||....++...
T Consensus 275 FSPdGE~yAsGSEDGTirlWQt~~~~~~~ 303 (334)
T KOG0278|consen 275 FSPDGELYASGSEDGTIRLWQTTPGKTYG 303 (334)
T ss_pred ECCCCceeeccCCCceEEEEEecCCCchh
Confidence 99999999999999999999987766543
No 91
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=4.7e-24 Score=222.57 Aligned_cols=278 Identities=18% Similarity=0.334 Sum_probs=226.8
Q ss_pred cceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCe--eeEEecCCCCceee-EEEcc-CCCEEEEEECC
Q 007411 303 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGK--CMRTYMGHSKAVRD-ISFCN-DGTKFLTASYD 378 (604)
Q Consensus 303 ~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~--~~~~~~~h~~~V~~-l~fsp-dg~~L~s~s~D 378 (604)
.++-+.+.||...|..+++.+. ..++++|.||++++|+-. ..+ ....+.+|.+.|.+ +++-+ ++-+|++|+.|
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~--~~i~s~sRd~t~~vw~~~-~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D 80 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDG--VCIISGSRDGTVKVWAKK-GKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMD 80 (745)
T ss_pred ceeEEEeccCccchheeEecCC--eEEeecCCCCceeeeecc-CcccccceecccCcceeeccceeccccCcceEeeccc
Confidence 3677899999999999987765 589999999999999973 332 23457788888887 88886 55579999999
Q ss_pred CcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEE
Q 007411 379 KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRF 458 (604)
Q Consensus 379 g~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l 458 (604)
.+|.+|.+.+..++..+..+... +++++...+ ..+++|+.|.++++|-. +++...+.+|...|.++...|.+ .+
T Consensus 81 ~~i~v~~~~~~~P~~~LkgH~sn-VC~ls~~~~--~~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~ 154 (745)
T KOG0301|consen 81 TTIIVFKLSQAEPLYTLKGHKSN-VCSLSIGED--GTLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TY 154 (745)
T ss_pred ceEEEEecCCCCchhhhhccccc-eeeeecCCc--CceEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cE
Confidence 99999999999999998765544 344443322 23899999999999965 45666799999999999999988 99
Q ss_pred EEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEE
Q 007411 459 VTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQ 538 (604)
Q Consensus 459 ~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 538 (604)
+|||.|++|++|.- +..++.+. +|...|+.+++-+++ .|++++.||.|++|++.. ..+ ..+.+| ..++.+
T Consensus 155 vTgsaDKtIklWk~--~~~l~tf~-gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~g-e~l---~~~~gh--tn~vYs 224 (745)
T KOG0301|consen 155 VTGSADKTIKLWKG--GTLLKTFS-GHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDG-EVL---LEMHGH--TNFVYS 224 (745)
T ss_pred EeccCcceeeeccC--Cchhhhhc-cchhheeeeEEecCC-CeEeecCCceEEEEeccC-cee---eeeecc--ceEEEE
Confidence 99999999999985 55666665 599999999999765 478899999999999954 333 345666 567778
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEe
Q 007411 539 VNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 603 (604)
Q Consensus 539 l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vW 603 (604)
++..+++..|++++.|++++||+.. .+.+.+......|+++.+.+ ++ -|++|++||.|+||
T Consensus 225 is~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~-Ng-DIvvg~SDG~VrVf 285 (745)
T KOG0301|consen 225 ISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLL-NG-DIVVGGSDGRVRVF 285 (745)
T ss_pred EEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEee-CC-CEEEeccCceEEEE
Confidence 8888888999999999999999866 78888886666899999987 44 38889999999998
No 92
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=9.1e-24 Score=197.55 Aligned_cols=267 Identities=18% Similarity=0.239 Sum_probs=225.0
Q ss_pred cccCcceeeccCccccccceeecCCCccccCCCCcccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecC
Q 007411 265 HVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVV 344 (604)
Q Consensus 265 ~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~ 344 (604)
...-..+.......|...+.|...+... .. -..++||++.|-.++|+|.+..+|++++.|.+|++||+
T Consensus 27 ~wn~~g~~lasgs~dktv~v~n~e~~r~--~~---------~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~- 94 (313)
T KOG1407|consen 27 AWNCDGTKLASGSFDKTVSVWNLERDRF--RK---------ELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDI- 94 (313)
T ss_pred EEcccCceeeecccCCceEEEEecchhh--hh---------hhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEe-
Confidence 3444555667777888888887655421 11 12457999999999999998999999999999999999
Q ss_pred CCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCe
Q 007411 345 NSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKK 424 (604)
Q Consensus 345 ~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~ 424 (604)
..+++........+.| -+.|+|+|.+++.++.|..|...|.++.+.+..........-++|+.++ ++|+.....|.
T Consensus 95 r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~n---d~Fflt~GlG~ 170 (313)
T KOG1407|consen 95 RSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSN---DLFFLTNGLGC 170 (313)
T ss_pred ccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCC---CEEEEecCCce
Confidence 6778877776554444 5789999999999999999999999999998888777776667777332 67888888899
Q ss_pred EEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEE
Q 007411 425 IVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQ 504 (604)
Q Consensus 425 I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~ 504 (604)
|.|....+.++++.++.|.....||.|+|+|++|++|+.|..+.+||+....+.+.+.. +..+|..++|+.+|++||++
T Consensus 171 v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isR-ldwpVRTlSFS~dg~~lASa 249 (313)
T KOG1407|consen 171 VEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISR-LDWPVRTLSFSHDGRMLASA 249 (313)
T ss_pred EEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeecc-ccCceEEEEeccCcceeecc
Confidence 99999999999999999999999999999999999999999999999999888888874 88899999999999999999
Q ss_pred EcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCC
Q 007411 505 SLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE 554 (604)
Q Consensus 505 s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~d 554 (604)
|.|..|-|=++.++.++..++. .++...++|+|...+||-++.|
T Consensus 250 SEDh~IDIA~vetGd~~~eI~~------~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 250 SEDHFIDIAEVETGDRVWEIPC------EGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred CccceEEeEecccCCeEEEeec------cCCceeEEecCCCceeeEEecC
Confidence 9999999999999887765543 4566789999999999876654
No 93
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.93 E-value=1.6e-23 Score=196.47 Aligned_cols=277 Identities=19% Similarity=0.296 Sum_probs=216.0
Q ss_pred ccccCcceeeccCccccccceeecCCCccccCCCCcccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEec
Q 007411 264 EHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDV 343 (604)
Q Consensus 264 ~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~ 343 (604)
.+......+.-+...|.....|- -...+.+-++.||++.|.||....+ ...|++|+.|.+++|||+
T Consensus 16 iKyN~eGDLlFscaKD~~~~vw~-------------s~nGerlGty~GHtGavW~~Did~~-s~~liTGSAD~t~kLWDv 81 (327)
T KOG0643|consen 16 IKYNREGDLLFSCAKDSTPTVWY-------------SLNGERLGTYDGHTGAVWCCDIDWD-SKHLITGSADQTAKLWDV 81 (327)
T ss_pred EEecCCCcEEEEecCCCCceEEE-------------ecCCceeeeecCCCceEEEEEecCC-cceeeeccccceeEEEEc
Confidence 33344444444555555555553 3455778999999999999999998 899999999999999999
Q ss_pred CCCCeeeEEecCCCCceeeEEEccCCCEEEEEEC-----CCcEEEEECC-------CCcEEEEeeC-CCcceEEEEccCC
Q 007411 344 VNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASY-----DKNIKYWDTE-------TGQVIRTFST-GKIPYVVKLNPDD 410 (604)
Q Consensus 344 ~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~-----Dg~I~vWD~~-------t~~~i~~~~~-~~~~~~~~~~~~~ 410 (604)
.+++++.++. ...+|..+.|+++|++++.+.. .+.|.++|++ ...++..+.. ...+....|.+.+
T Consensus 82 -~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~ 159 (327)
T KOG0643|consen 82 -ETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLG 159 (327)
T ss_pred -CCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccC
Confidence 7899998886 5678999999999998887754 4789999998 3444555544 3455566677655
Q ss_pred CCCcEEEEEEcCCeEEEEeCCCC-ceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcc
Q 007411 411 DKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSM 489 (604)
Q Consensus 411 ~~~~~lvsg~~dg~I~iwD~~s~-~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v 489 (604)
..|++|..+|.|.+||++++ +.+...+.|...|+.|+++++..+|+++|.|.+-++||+.+...++++. ...++
T Consensus 160 ---~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~--te~Pv 234 (327)
T KOG0643|consen 160 ---ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT--TERPV 234 (327)
T ss_pred ---CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee--ecccc
Confidence 68999999999999999998 5666668899999999999999999999999999999999999999885 56789
Q ss_pred cEEEEcCCCCEEEEEEcCCeEEEE--EcCCce---------eecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEE
Q 007411 490 PSISLHPNTNWLAAQSLDNQILIY--STRERF---------QLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCW 558 (604)
Q Consensus 490 ~~l~~sp~g~~l~s~s~Dg~I~iw--d~~~~~---------~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~ 558 (604)
++.+++|....++.|+.....-+= +.+.++ ....+...++| -++|++++|+|+|+..++|+.||.|+
T Consensus 235 N~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGH--FGPINsvAfhPdGksYsSGGEDG~VR 312 (327)
T KOG0643|consen 235 NTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGH--FGPINSVAFHPDGKSYSSGGEDGYVR 312 (327)
T ss_pred cceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccc--ccCcceeEECCCCcccccCCCCceEE
Confidence 999999988777776543322221 222221 01223456677 58899999999999999999999999
Q ss_pred EEeCC
Q 007411 559 FWDWK 563 (604)
Q Consensus 559 iwd~~ 563 (604)
+.-..
T Consensus 313 ~h~Fd 317 (327)
T KOG0643|consen 313 LHHFD 317 (327)
T ss_pred EEEec
Confidence 87543
No 94
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=5.2e-25 Score=228.04 Aligned_cols=284 Identities=21% Similarity=0.357 Sum_probs=226.6
Q ss_pred CCCCeE---EEEEcCCCCCEEEEEECCCcEEEEecCCCCe-----eeEEecCCCCceeeEEEccCCCEEEEEECCCcEEE
Q 007411 312 HTKGVS---AIRFFPKYGHLILSAGMDTKVKIWDVVNSGK-----CMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKY 383 (604)
Q Consensus 312 H~~~V~---~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~-----~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~v 383 (604)
|...|. .+..+..++++|+|||.||.|++|++..... .+..+..|...|+++....+++.|++||.|-+|++
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~ 99 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKV 99 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEE
Confidence 444555 5666666688999999999999999853332 57778899999999999999999999999999999
Q ss_pred EECCCC--cEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCC--ceEEE--------Ec-CcCCceeEEE
Q 007411 384 WDTETG--QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK--EITQE--------YD-QHLGAVNTIT 450 (604)
Q Consensus 384 WD~~t~--~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~--~~~~~--------~~-~h~~~V~~i~ 450 (604)
|+...+ -++.++.. |..++-++.+...+..++++|+-|+.|.+||++++ +.+.. +. ++...|.+++
T Consensus 100 W~~~~~~~~c~stir~-H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA 178 (735)
T KOG0308|consen 100 WNAHKDNTFCMSTIRT-HKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLA 178 (735)
T ss_pred eecccCcchhHhhhhc-ccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeee
Confidence 999877 34445533 33444444443345578999999999999999987 22222 22 6888999999
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCc
Q 007411 451 FVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGH 530 (604)
Q Consensus 451 ~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~ 530 (604)
.++.+..|++|+..+.|++||.++...+..+. +|...|.++..+++|..+++++.||+|++||+....++.. +..|
T Consensus 179 ~N~t~t~ivsGgtek~lr~wDprt~~kimkLr-GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T---~~vH 254 (735)
T KOG0308|consen 179 MNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR-GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLAT---YIVH 254 (735)
T ss_pred cCCcceEEEecCcccceEEeccccccceeeee-ccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeee---EEec
Confidence 99999999999999999999999998888887 7999999999999999999999999999999987766543 4445
Q ss_pred ccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEe
Q 007411 531 IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 603 (604)
Q Consensus 531 ~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vW 603 (604)
...+.++..+|+-..+++|+.||.|..=|+.+......+-....+|..+..+-++.. +-++..|+.|+-|
T Consensus 255 --~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~-~WvtTtds~I~rW 324 (735)
T KOG0308|consen 255 --KEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNS-VWVTTTDSSIKRW 324 (735)
T ss_pred --cCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCC-ceeeeccccceec
Confidence 344888999999999999999999999999885433333334556777777754444 3666778888887
No 95
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=1.8e-24 Score=225.27 Aligned_cols=294 Identities=15% Similarity=0.255 Sum_probs=233.4
Q ss_pred EEecCCCCCeEEEEEcCCC----------CCEEEEEECCCcEEEEecCC--CCeeeE-----------------------
Q 007411 307 HTWSGHTKGVSAIRFFPKY----------GHLILSAGMDTKVKIWDVVN--SGKCMR----------------------- 351 (604)
Q Consensus 307 ~tl~gH~~~V~~l~fsp~~----------g~~L~sgs~Dg~I~IWd~~~--~~~~~~----------------------- 351 (604)
+.+--|+..|+.+.-.|-+ ...+++|+.|++|++|++.- .+...+
T Consensus 363 ~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d 442 (1080)
T KOG1408|consen 363 SSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHD 442 (1080)
T ss_pred eeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhh
Confidence 3444688888888766621 24689999999999999832 001100
Q ss_pred -----------EecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCC-cceEEEEccCCCCCcEEEEE
Q 007411 352 -----------TYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAG 419 (604)
Q Consensus 352 -----------~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~-~~~~~~~~~~~~~~~~lvsg 419 (604)
..-+....|++++.+|+|++|++|..-|+|+||++..-+....+..+. .+.|+.++...-...+|+++
T Consensus 443 ~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASa 522 (1080)
T KOG1408|consen 443 ASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASA 522 (1080)
T ss_pred ccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhc
Confidence 001234469999999999999999999999999998877766665443 34566666554555789999
Q ss_pred EcCCeEEEEeCCC-CceEEEEcCcCCceeEEEEeCCC--CEEEEEeCCCcEEEEECCCCeEEEEee----cCCCCcccEE
Q 007411 420 MSDKKIVQWDMNT-KEITQEYDQHLGAVNTITFVDSN--RRFVTSSDDKSLRVWEFGIPVVIKYIS----EPHMHSMPSI 492 (604)
Q Consensus 420 ~~dg~I~iwD~~s-~~~~~~~~~h~~~V~~i~~sp~~--~~l~sgs~Dg~I~iwdl~~~~~~~~~~----~~~~~~v~~l 492 (604)
+.|..|.+||... -.+++++.+|...|+++.|.-.| ..+++++.|+.|.+--.+.......+. ......+..+
T Consensus 523 srdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm 602 (1080)
T KOG1408|consen 523 SRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDM 602 (1080)
T ss_pred cCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEe
Confidence 9999999999964 46888999999999999999877 789999999988654433221111111 1234457889
Q ss_pred EEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEe
Q 007411 493 SLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK 572 (604)
Q Consensus 493 ~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~ 572 (604)
++.|..+++++++.|..|+||++.+++....++.-.+| .+....+...|.|.||++.+.|.+|.|+|+.+|+++..+.
T Consensus 603 ~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~--eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~ 680 (1080)
T KOG1408|consen 603 AVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDH--EGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMT 680 (1080)
T ss_pred eeCCCcceEEEEecccceEEEeccccceeeeecccccC--CCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhc
Confidence 99999999999999999999999998877666655555 5777889999999999999999999999999999999999
Q ss_pred cCCCcEEEEEEecCCCCEEEEEeCCCcEEEe
Q 007411 573 CHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 603 (604)
Q Consensus 573 ~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vW 603 (604)
+|...|+++.|.+ +...|++.+.||+|.||
T Consensus 681 GHsE~VTG~kF~n-DCkHlISvsgDgCIFvW 710 (1080)
T KOG1408|consen 681 GHSEAVTGVKFLN-DCKHLISVSGDGCIFVW 710 (1080)
T ss_pred Ccchheeeeeecc-cchhheeecCCceEEEE
Confidence 9999999999999 78899999999999999
No 96
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.93 E-value=4.4e-24 Score=213.40 Aligned_cols=300 Identities=16% Similarity=0.222 Sum_probs=220.7
Q ss_pred CcceeEEecCCCCCeEEEEEcCCCC-CEEEEEECCCcEEEEecC---CCCeeeEEecCCCCceeeEEEcc-CCCEEEEEE
Q 007411 302 PKRLVHTWSGHTKGVSAIRFFPKYG-HLILSAGMDTKVKIWDVV---NSGKCMRTYMGHSKAVRDISFCN-DGTKFLTAS 376 (604)
Q Consensus 302 p~~~i~tl~gH~~~V~~l~fsp~~g-~~L~sgs~Dg~I~IWd~~---~~~~~~~~~~~h~~~V~~l~fsp-dg~~L~s~s 376 (604)
........+-|.+.|++++|+|... .++++|..-|+|-+||+. ....-+..+..|+.+|.+|.|+| +...+++.|
T Consensus 175 ~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssS 254 (498)
T KOG4328|consen 175 DYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSS 254 (498)
T ss_pred cceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeec
Confidence 3345566777999999999999855 789999999999999992 33445667889999999999999 667899999
Q ss_pred CCCcEEEEECCCCcEEEEeeCCC-cceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCce-EEEEcCcCCceeEEEEeCC
Q 007411 377 YDKNIKYWDTETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI-TQEYDQHLGAVNTITFVDS 454 (604)
Q Consensus 377 ~Dg~I~vWD~~t~~~i~~~~~~~-~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~-~~~~~~h~~~V~~i~~sp~ 454 (604)
+||+|++-|++++..-..+.... ......+.....+ ..+++|..=|...+||++++.. ...+.-|...|++++++|.
T Consensus 255 yDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~-~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~ 333 (498)
T KOG4328|consen 255 YDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAES-RSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPV 333 (498)
T ss_pred cCceeeeeeecchhhHHHhhcCccceeeeeccccCCC-ccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCC
Confidence 99999999999775433333321 2222222222233 4466666666999999998754 5666778899999999997
Q ss_pred CC-EEEEEeCCCcEEEEECCCCeEEE---EeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcC---Cceeecccccc
Q 007411 455 NR-RFVTSSDDKSLRVWEFGIPVVIK---YISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR---ERFQLNKKKRF 527 (604)
Q Consensus 455 ~~-~l~sgs~Dg~I~iwdl~~~~~~~---~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~---~~~~~~~~~~~ 527 (604)
.. +|+++|.|++++|||++....-. ....+|...|.+..|+|.+..|++.+.|+.|+|||.. ........ ..
T Consensus 334 ~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~-I~ 412 (498)
T KOG4328|consen 334 CPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGT-IP 412 (498)
T ss_pred CchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccce-ee
Confidence 65 68899999999999998643222 2224699999999999998889999999999999984 11111000 00
Q ss_pred cCcccc--cceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCC-cEEE-EEEecCCCCEEEEEeCCCcEEEe
Q 007411 528 AGHIVA--GYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEG-VCIG-CEWHPLEQSKVATCGWDGLIKYW 603 (604)
Q Consensus 528 ~~~~~~--~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~-~V~~-v~~sp~~~~~l~tgg~DG~I~vW 603 (604)
..+... -......|.|+..+|++|-.-..|-|+|-..++.+..+..... .|.+ ..|||.+..+++-++..|.|.||
T Consensus 413 Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vf 492 (498)
T KOG4328|consen 413 HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVF 492 (498)
T ss_pred ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEE
Confidence 011111 1233578999999999999999999999999998887754433 4444 48999554466666678889888
No 97
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.7e-24 Score=229.92 Aligned_cols=248 Identities=17% Similarity=0.299 Sum_probs=194.7
Q ss_pred EEec-CCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcE------------------------------EE-E----
Q 007411 351 RTYM-GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQV------------------------------IR-T---- 394 (604)
Q Consensus 351 ~~~~-~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~------------------------------i~-~---- 394 (604)
+.+. .|.+.|.++.|++||++||+||.||.|+||.+..... +. .
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 3345 8999999999999999999999999999998754000 00 0
Q ss_pred ----------e--------------eCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEE
Q 007411 395 ----------F--------------STGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTIT 450 (604)
Q Consensus 395 ----------~--------------~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~ 450 (604)
+ -.+|..-++.+++. +.++|++++.|.+|++|++...+++..|. |..-|+||+
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWS--Kn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVa 416 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWS--KNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVA 416 (712)
T ss_pred ccccCCccccCCCccccccccchhhhhccchhheecccc--cCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEE
Confidence 0 01223334445553 34789999999999999999999999995 999999999
Q ss_pred EeC-CCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccc--
Q 007411 451 FVD-SNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRF-- 527 (604)
Q Consensus 451 ~sp-~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~-- 527 (604)
|+| |.++|++||-||.||||++...+...... ...-|++++|.|+|++.++|+.+|.+++|++...+........
T Consensus 417 FnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D--l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~ 494 (712)
T KOG0283|consen 417 FNPVDDRYFISGSLDGKVRLWSISDKKVVDWND--LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLH 494 (712)
T ss_pred ecccCCCcEeecccccceEEeecCcCeeEeehh--hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeec
Confidence 999 67899999999999999998777665542 4478999999999999999999999999998765433221110
Q ss_pred cC-cccccceEEEEEcCCC-CEEEEEcCCCcEEEEeCCCCeeEEEEecCCC--cEEEEEEecCCCCEEEEEeCCCcEEEe
Q 007411 528 AG-HIVAGYACQVNFSPDG-RFVMSGDGEGKCWFWDWKSCKVFRTLKCHEG--VCIGCEWHPLEQSKVATCGWDGLIKYW 603 (604)
Q Consensus 528 ~~-~~~~~~v~~l~~spdg-~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~--~V~~v~~sp~~~~~l~tgg~DG~I~vW 603 (604)
.+ ......|+.+.|.|.. .-|++.+.|.+|+|+|.++..++..|+++.. .-....|+. ++.+|++++.|..|+||
T Consensus 495 ~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~-Dgk~IVs~seDs~VYiW 573 (712)
T KOG0283|consen 495 NKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSS-DGKHIVSASEDSWVYIW 573 (712)
T ss_pred cCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEcc-CCCEEEEeecCceEEEE
Confidence 00 1112368999998743 3577778999999999999999999997643 346778998 88999999999999999
Q ss_pred C
Q 007411 604 D 604 (604)
Q Consensus 604 D 604 (604)
+
T Consensus 574 ~ 574 (712)
T KOG0283|consen 574 K 574 (712)
T ss_pred e
Confidence 5
No 98
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=4.8e-24 Score=203.79 Aligned_cols=288 Identities=19% Similarity=0.349 Sum_probs=229.0
Q ss_pred ccCCCCCCccccCcceeeccCccccccceeecCCCccccCCCCcccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECC
Q 007411 256 GNAGGEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMD 335 (604)
Q Consensus 256 ~~~~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~D 335 (604)
+++.+........+-.+.++...|...|.|-. ...+|+.++.||.+.|+||.|++. +.++++++.|
T Consensus 146 GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~-------------Esg~CL~~Y~GH~GSVNsikfh~s-~~L~lTaSGD 211 (481)
T KOG0300|consen 146 GHKDGIWHVAADSTQPICGTASADHTARIWSL-------------ESGACLATYTGHTGSVNSIKFHNS-GLLLLTASGD 211 (481)
T ss_pred ccccceeeehhhcCCcceeecccccceeEEee-------------ccccceeeecccccceeeEEeccc-cceEEEccCC
Confidence 34445555556666667888888888888844 345788999999999999999998 9999999999
Q ss_pred CcEEEEec------CC-----------------------------C----CeeeEEecCCCCceeeEEEccCCCEEEEEE
Q 007411 336 TKVKIWDV------VN-----------------------------S----GKCMRTYMGHSKAVRDISFCNDGTKFLTAS 376 (604)
Q Consensus 336 g~I~IWd~------~~-----------------------------~----~~~~~~~~~h~~~V~~l~fspdg~~L~s~s 376 (604)
++.+||.. .. + ..++..+.+|...|.+..|...|+.+++++
T Consensus 212 ~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaS 291 (481)
T KOG0300|consen 212 ETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTAS 291 (481)
T ss_pred cchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeee
Confidence 99999973 00 0 124567889999999999999999999999
Q ss_pred CCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCC-ceEEEEcCcCCceeEEEEeCCC
Q 007411 377 YDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITFVDSN 455 (604)
Q Consensus 377 ~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~-~~~~~~~~h~~~V~~i~~sp~~ 455 (604)
.|++..+||+++|.++..+..+......+.. .+.+.++++.+.|.+.++||.+.. ..+..|++|...|+++.|.-+
T Consensus 292 WDRTAnlwDVEtge~v~~LtGHd~ELtHcst--HptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d- 368 (481)
T KOG0300|consen 292 WDRTANLWDVETGEVVNILTGHDSELTHCST--HPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD- 368 (481)
T ss_pred ccccceeeeeccCceeccccCcchhcccccc--CCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC-
Confidence 9999999999999999998766544332222 134589999999999999999854 457789999999999999865
Q ss_pred CEEEEEeCCCcEEEEECCCCe-EEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccc--cccCccc
Q 007411 456 RRFVTSSDDKSLRVWEFGIPV-VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKK--RFAGHIV 532 (604)
Q Consensus 456 ~~l~sgs~Dg~I~iwdl~~~~-~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~--~~~~~~~ 532 (604)
..+++|++|.+|++||+++.. ++.++. ...++..++++..+..|+.-..+.+|++||+... .+.++. .-.+|
T Consensus 369 d~vVSgSDDrTvKvWdLrNMRsplATIR--tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~-RlaRlPrtsRqgH-- 443 (481)
T KOG0300|consen 369 DRVVSGSDDRTVKVWDLRNMRSPLATIR--TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGN-RLARLPRTSRQGH-- 443 (481)
T ss_pred CceeecCCCceEEEeeeccccCcceeee--cCCccceeEeecCCceEEeccCCceEEEEecCCC-ccccCCccccccc--
Confidence 478999999999999998764 444443 5678999999998899999999999999999754 343333 23344
Q ss_pred ccceEEEEEcCCC--CEEEEEcCCCcEEEEeCCCC
Q 007411 533 AGYACQVNFSPDG--RFVMSGDGEGKCWFWDWKSC 565 (604)
Q Consensus 533 ~~~v~~l~~spdg--~~L~sgs~dG~I~iwd~~t~ 565 (604)
...|+|++|..+. .-|++++.|..+.-|.+...
T Consensus 444 rRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 444 RRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred ceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 5778999997653 34778888999999988654
No 99
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=1.9e-22 Score=205.72 Aligned_cols=269 Identities=17% Similarity=0.202 Sum_probs=202.4
Q ss_pred CEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEE-EEEECCCcEEEEECCCCcEEEEeeCCCcceEEE
Q 007411 327 HLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKF-LTASYDKNIKYWDTETGQVIRTFSTGKIPYVVK 405 (604)
Q Consensus 327 ~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L-~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~ 405 (604)
.++++++.|+.|++||+ .+++++..+..|. .+.+++|+|+++.+ ++++.++.|++||+.+++.+..+..+..+..+.
T Consensus 2 ~~~~s~~~d~~v~~~d~-~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~ 79 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDT-ATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFA 79 (300)
T ss_pred cEEEEecCCCEEEEEEC-CCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEE
Confidence 57889999999999999 5777888887654 47889999999876 566788999999999999888776655566666
Q ss_pred EccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCC-cEEEEECCCCeEEEEeecC
Q 007411 406 LNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDK-SLRVWEFGIPVVIKYISEP 484 (604)
Q Consensus 406 ~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg-~I~iwdl~~~~~~~~~~~~ 484 (604)
+.+++ ..+++++..++.|++||+.+.+.+..+.. ...+.++.|+|++.++++++.++ .+.+||..+......+..
T Consensus 80 ~~~~g--~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~- 155 (300)
T TIGR03866 80 LHPNG--KILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV- 155 (300)
T ss_pred ECCCC--CEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-
Confidence 66643 24455556789999999999887777753 34568899999999999988775 467789988776655432
Q ss_pred CCCcccEEEEcCCCCEEEEEE-cCCeEEEEEcCCceeeccccccc-C-cccccceEEEEEcCCCCEEEEE-cCCCcEEEE
Q 007411 485 HMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFA-G-HIVAGYACQVNFSPDGRFVMSG-DGEGKCWFW 560 (604)
Q Consensus 485 ~~~~v~~l~~sp~g~~l~s~s-~Dg~I~iwd~~~~~~~~~~~~~~-~-~~~~~~v~~l~~spdg~~L~sg-s~dG~I~iw 560 (604)
.....+++|+|++.+|++++ .++.|.+||+.+...+....... + +........++|+|+|++++++ ..++.|.+|
T Consensus 156 -~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~ 234 (300)
T TIGR03866 156 -DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVV 234 (300)
T ss_pred -CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEE
Confidence 33467899999999886554 68999999998765543322110 0 1011223468899999986554 456789999
Q ss_pred eCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEE-eCCCcEEEeC
Q 007411 561 DWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATC-GWDGLIKYWD 604 (604)
Q Consensus 561 d~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tg-g~DG~I~vWD 604 (604)
|..+++.+..+. +...+.+++|+| ++.+|+++ +.+|.|++||
T Consensus 235 d~~~~~~~~~~~-~~~~~~~~~~~~-~g~~l~~~~~~~~~i~v~d 277 (300)
T TIGR03866 235 DAKTYEVLDYLL-VGQRVWQLAFTP-DEKYLLTTNGVSNDVSVID 277 (300)
T ss_pred ECCCCcEEEEEE-eCCCcceEEECC-CCCEEEEEcCCCCeEEEEE
Confidence 999998877664 445789999999 56677665 6799999997
No 100
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.6e-24 Score=224.52 Aligned_cols=314 Identities=18% Similarity=0.302 Sum_probs=240.1
Q ss_pred eeccCccccccceeecCCCccccCCCCcccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCC-eee
Q 007411 272 FHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG-KCM 350 (604)
Q Consensus 272 ~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~-~~~ 350 (604)
+.-+++.|.+.|.|....... ......+.+++.|+..|+.+...-+ ++.|+|+|.|-+|++|+....+ -|+
T Consensus 39 yLfTgGRDg~i~~W~~~~d~~-------~~s~~~~asme~HsDWVNDiiL~~~-~~tlIS~SsDtTVK~W~~~~~~~~c~ 110 (735)
T KOG0308|consen 39 YLFTGGRDGIIRLWSVTQDSN-------EPSTPYIASMEHHSDWVNDIILCGN-GKTLISASSDTTVKVWNAHKDNTFCM 110 (735)
T ss_pred eEEecCCCceEEEeccccccC-------CcccchhhhhhhhHhHHhhHHhhcC-CCceEEecCCceEEEeecccCcchhH
Confidence 556788999999996643321 1122356788999999999999988 8899999999999999994443 788
Q ss_pred EEecCCCCceeeEEE-ccCCCEEEEEECCCcEEEEECCCC--cEEEEee--------CCC--cceEEEEccCCCCCcEEE
Q 007411 351 RTYMGHSKAVRDISF-CNDGTKFLTASYDKNIKYWDTETG--QVIRTFS--------TGK--IPYVVKLNPDDDKQNILL 417 (604)
Q Consensus 351 ~~~~~h~~~V~~l~f-spdg~~L~s~s~Dg~I~vWD~~t~--~~i~~~~--------~~~--~~~~~~~~~~~~~~~~lv 417 (604)
.++..|..-|.|+++ .++..++++|+.|+.|.|||++++ +.+.++. .+. ..+.++.++. +.+|+
T Consensus 111 stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t---~t~iv 187 (735)
T KOG0308|consen 111 STIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQT---GTIIV 187 (735)
T ss_pred hhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCc---ceEEE
Confidence 899999999999999 778889999999999999999988 3333322 122 2344444443 36899
Q ss_pred EEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCC
Q 007411 418 AGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPN 497 (604)
Q Consensus 418 sg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~ 497 (604)
+|+..+.|++||.++++.+..+.+|...|.++..+++|..++++|.||+|++||++...++.++. .|...|.++..+|+
T Consensus 188 sGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~-vH~e~VWaL~~~~s 266 (735)
T KOG0308|consen 188 SGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYI-VHKEGVWALQSSPS 266 (735)
T ss_pred ecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEE-eccCceEEEeeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999998876 47788999999999
Q ss_pred CCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC-------CeeE--
Q 007411 498 TNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS-------CKVF-- 568 (604)
Q Consensus 498 g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t-------~~~~-- 568 (604)
-..+.+|+.|+.|..=|+++......+..- ..++..+..+.+.+-+.+++.|+.|+-|...- +.+.
T Consensus 267 f~~vYsG~rd~~i~~Tdl~n~~~~tlick~-----daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~ 341 (735)
T KOG0308|consen 267 FTHVYSGGRDGNIYRTDLRNPAKSTLICKE-----DAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFF 341 (735)
T ss_pred cceEEecCCCCcEEecccCCchhheEeecC-----CCchhhhhhccccCCceeeeccccceecCCccccccccCCCCCcc
Confidence 999999999999999999874222111111 12333455554444457777888888885431 1111
Q ss_pred ----------------EEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007411 569 ----------------RTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 569 ----------------~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
..+.+ ..+|...+... +.+.++|=...|.+.+||
T Consensus 342 ~T~~~~~~~~~~~tp~~vi~G-g~ai~k~~mL~-dkRhVlTkDa~gnv~lwD 391 (735)
T KOG0308|consen 342 STDSNNHSCDLTNTPDSVIPG-GAAIKKHAMLN-DKRHVLTKDAKGNVALWD 391 (735)
T ss_pred cccCCCccccccCCCceeccC-chhhhhhhhhc-CcceEeeecCCCCEEEEE
Confidence 11111 11233444444 677899999999999998
No 101
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2.2e-24 Score=199.90 Aligned_cols=251 Identities=21% Similarity=0.355 Sum_probs=201.3
Q ss_pred ecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCC--eeeEEecCCCCceeeEEEcc--CCCEEEEEECCCcEEEE
Q 007411 309 WSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG--KCMRTYMGHSKAVRDISFCN--DGTKFLTASYDKNIKYW 384 (604)
Q Consensus 309 l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~--~~~~~~~~h~~~V~~l~fsp--dg~~L~s~s~Dg~I~vW 384 (604)
-..|.+.|..+...-- |.+|+||++|++|+|+.+.+.+ .++.++.||.++|..++|.. -|.+|++|++||.|.||
T Consensus 7 dt~H~D~IHda~lDyy-gkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYY-GKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhhHhhhhhh-cceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 3578888888877666 9999999999999999997766 68889999999999999976 89999999999999999
Q ss_pred ECCCCcEEEEee---CCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCC---ceEEEEcCcCCceeEEEEeCC---C
Q 007411 385 DTETGQVIRTFS---TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK---EITQEYDQHLGAVNTITFVDS---N 455 (604)
Q Consensus 385 D~~t~~~i~~~~---~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~---~~~~~~~~h~~~V~~i~~sp~---~ 455 (604)
.-++|+-.+... ......++++.|+.. +.+|+++++||.|.+++.++. ........|.-.|++++|.|. |
T Consensus 86 ke~~g~w~k~~e~~~h~~SVNsV~waphey-gl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g 164 (299)
T KOG1332|consen 86 KEENGRWTKAYEHAAHSASVNSVAWAPHEY-GLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPG 164 (299)
T ss_pred ecCCCchhhhhhhhhhcccceeeccccccc-ceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCc
Confidence 988885333221 234567888888764 478999999999999988764 233345679999999999986 4
Q ss_pred -----------CEEEEEeCCCcEEEEECCCCeEE-EEeecCCCCcccEEEEcCCC----CEEEEEEcCCeEEEEEcCCce
Q 007411 456 -----------RRFVTSSDDKSLRVWEFGIPVVI-KYISEPHMHSMPSISLHPNT----NWLAAQSLDNQILIYSTRERF 519 (604)
Q Consensus 456 -----------~~l~sgs~Dg~I~iwdl~~~~~~-~~~~~~~~~~v~~l~~sp~g----~~l~s~s~Dg~I~iwd~~~~~ 519 (604)
+.|++|+.|..|+||+.....-. ......|..-|+.++|.|.- .+|++++.||++.||..+...
T Consensus 165 ~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~ 244 (299)
T KOG1332|consen 165 SLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEY 244 (299)
T ss_pred cccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCcc
Confidence 57999999999999999875322 22245799999999999974 579999999999999877432
Q ss_pred eecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCC
Q 007411 520 QLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 563 (604)
Q Consensus 520 ~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~ 563 (604)
.......+.. ....+..+.||..|++|++++.|+.|.+|.-.
T Consensus 245 e~wk~tll~~--f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 245 EPWKKTLLEE--FPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred Cccccccccc--CCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 3322222222 24568889999999999999999999999743
No 102
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.92 E-value=6.4e-23 Score=217.91 Aligned_cols=296 Identities=22% Similarity=0.349 Sum_probs=244.1
Q ss_pred CCcccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEE-EEE
Q 007411 297 DHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKF-LTA 375 (604)
Q Consensus 297 ~~~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L-~s~ 375 (604)
-|++-..+.+++++++...|+++.=+|- -..++.|..+|+|.|+++ ..++.+.+++...+.|+.++|..||+.+ ++|
T Consensus 186 l~Nvrt~K~v~~f~~~~s~IT~ieqsPa-LDVVaiG~~~G~ViifNl-K~dkil~sFk~d~g~VtslSFrtDG~p~las~ 263 (910)
T KOG1539|consen 186 LWNVRTGKVVYTFQEFFSRITAIEQSPA-LDVVAIGLENGTVIIFNL-KFDKILMSFKQDWGRVTSLSFRTDGNPLLASG 263 (910)
T ss_pred EEEeccCcEEEEecccccceeEeccCCc-ceEEEEeccCceEEEEEc-ccCcEEEEEEccccceeEEEeccCCCeeEEec
Confidence 3677788999999999999999999998 889999999999999999 6888999998556999999999998755 556
Q ss_pred ECCCcEEEEECCCCcEEEEeeC----------------------------------------------C--CcceEEEEc
Q 007411 376 SYDKNIKYWDTETGQVIRTFST----------------------------------------------G--KIPYVVKLN 407 (604)
Q Consensus 376 s~Dg~I~vWD~~t~~~i~~~~~----------------------------------------------~--~~~~~~~~~ 407 (604)
+..|.+.+||++..+.+..... + .++.++.+.
T Consensus 264 ~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy 343 (910)
T KOG1539|consen 264 RSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFY 343 (910)
T ss_pred cCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeee
Confidence 6669999999874332211100 0 000111110
Q ss_pred cC------------------------------------------------------------------------------
Q 007411 408 PD------------------------------------------------------------------------------ 409 (604)
Q Consensus 408 ~~------------------------------------------------------------------------------ 409 (604)
-.
T Consensus 344 ~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~ 423 (910)
T KOG1539|consen 344 GSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRS 423 (910)
T ss_pred ccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcce
Confidence 00
Q ss_pred ---------------------------------CCCCcEEEEEEcCCeEEEEeCCCCceEEEE---cCcCCceeEEEEeC
Q 007411 410 ---------------------------------DDKQNILLAGMSDKKIVQWDMNTKEITQEY---DQHLGAVNTITFVD 453 (604)
Q Consensus 410 ---------------------------------~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~---~~h~~~V~~i~~sp 453 (604)
..-+++.+.|++.|.|-+|++.+|-....| ..|.++|++++...
T Consensus 424 ~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~ 503 (910)
T KOG1539|consen 424 AYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDG 503 (910)
T ss_pred EEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecC
Confidence 001456778889999999999999888888 58999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccc
Q 007411 454 SNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVA 533 (604)
Q Consensus 454 ~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~ 533 (604)
-++.+++++.+|.+++||+.....+..+. ...++.++..+.....++++..|-.|+++|..+... .+.+.|| .
T Consensus 504 ~n~~~vsa~~~Gilkfw~f~~k~l~~~l~--l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kv---vR~f~gh--~ 576 (910)
T KOG1539|consen 504 TNRLLVSAGADGILKFWDFKKKVLKKSLR--LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKV---VREFWGH--G 576 (910)
T ss_pred CCceEEEccCcceEEEEecCCcceeeeec--cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhh---hHHhhcc--c
Confidence 99999999999999999999988777774 466789999999999999999999999999987543 3567778 5
Q ss_pred cceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCC-CcEEEe
Q 007411 534 GYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWD-GLIKYW 603 (604)
Q Consensus 534 ~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~D-G~I~vW 603 (604)
..+++++|||||++|++++.|++|++||+.++.++-.+. -..+++++.|+| ++.+|||...| .-|++|
T Consensus 577 nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SP-ngD~LAT~Hvd~~gIylW 645 (910)
T KOG1539|consen 577 NRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSP-NGDFLATVHVDQNGIYLW 645 (910)
T ss_pred cceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECC-CCCEEEEEEecCceEEEE
Confidence 779999999999999999999999999999999998886 466899999999 88999999999 558888
No 103
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2.3e-24 Score=212.55 Aligned_cols=276 Identities=20% Similarity=0.366 Sum_probs=212.0
Q ss_pred cccCcceeeccCccccccceeecCCCccccCCCCcccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecC
Q 007411 265 HVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVV 344 (604)
Q Consensus 265 ~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~ 344 (604)
.++....+.++...|...-.|...+.. -.++.+++.||..+|.-|.|||+ .++|++|+.|..+.+||+
T Consensus 231 ~FS~nGkyLAsaSkD~Taiiw~v~~d~----------~~kl~~tlvgh~~~V~yi~wSPD-dryLlaCg~~e~~~lwDv- 298 (519)
T KOG0293|consen 231 QFSHNGKYLASASKDSTAIIWIVVYDV----------HFKLKKTLVGHSQPVSYIMWSPD-DRYLLACGFDEVLSLWDV- 298 (519)
T ss_pred EEcCCCeeEeeccCCceEEEEEEecCc----------ceeeeeeeecccCceEEEEECCC-CCeEEecCchHheeeccC-
Confidence 345555555555555555555443321 14789999999999999999999 899999999999999999
Q ss_pred CCCeeeEEec-CCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCc--ceEEEEccCCCCCcEEEEEEc
Q 007411 345 NSGKCMRTYM-GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKI--PYVVKLNPDDDKQNILLAGMS 421 (604)
Q Consensus 345 ~~~~~~~~~~-~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~--~~~~~~~~~~~~~~~lvsg~~ 421 (604)
.++.+...+. +|...+.+++|.|||..|++|+.|++|..||++.. .+.....-.. ...+++.+++ ..+++.+.
T Consensus 299 ~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~v~dlait~Dg---k~vl~v~~ 374 (519)
T KOG0293|consen 299 DTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN-ILGNWEGVRDPKVHDLAITYDG---KYVLLVTV 374 (519)
T ss_pred CcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcc-hhhcccccccceeEEEEEcCCC---cEEEEEec
Confidence 6777776664 45688999999999999999999999999999743 3333333333 3455555544 56777789
Q ss_pred CCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCc--ccEEEEcC-CC
Q 007411 422 DKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHS--MPSISLHP-NT 498 (604)
Q Consensus 422 dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~--v~~l~~sp-~g 498 (604)
|..|++|+..+......+ ....+|++++++.+++++++.-.+..|++||+.....+.... +|... +..-||-- +.
T Consensus 375 d~~i~l~~~e~~~dr~li-se~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~-Ghkq~~fiIrSCFgg~~~ 452 (519)
T KOG0293|consen 375 DKKIRLYNREARVDRGLI-SEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYF-GHKQGHFIIRSCFGGGND 452 (519)
T ss_pred ccceeeechhhhhhhccc-cccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhh-cccccceEEEeccCCCCc
Confidence 999999998876544333 356789999999999999999999999999999766665543 33332 33334433 45
Q ss_pred CEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcC-CCCEEEEEcCCCcEEEEeCC
Q 007411 499 NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP-DGRFVMSGDGEGKCWFWDWK 563 (604)
Q Consensus 499 ~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~L~sgs~dG~I~iwd~~ 563 (604)
.++++||.|+.|+||+..++..+ ..+.|| ...|.+++|+| +-.++|+++.||+|+||...
T Consensus 453 ~fiaSGSED~kvyIWhr~sgkll---~~LsGH--s~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 453 KFIASGSEDSKVYIWHRISGKLL---AVLSGH--SKTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred ceEEecCCCceEEEEEccCCcee---EeecCC--cceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 89999999999999999887665 567788 47799999999 45678999999999999765
No 104
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.92 E-value=8.9e-24 Score=206.81 Aligned_cols=239 Identities=20% Similarity=0.333 Sum_probs=195.6
Q ss_pred CCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCc-ceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCC
Q 007411 355 GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKI-PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK 433 (604)
Q Consensus 355 ~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~-~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~ 433 (604)
.|...|.++... +.+|++|++||.+++||.. |+++..+..+.. ...+.+...+.....|++++.|.++++|-++.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 488889998887 7799999999999999975 666666655443 343555444444568999999999999998876
Q ss_pred ce----EEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCC-------------------------CeEEEEeecC
Q 007411 434 EI----TQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGI-------------------------PVVIKYISEP 484 (604)
Q Consensus 434 ~~----~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~-------------------------~~~~~~~~~~ 484 (604)
+. +..-.+|...|-++...+++.+|++||.|..|.||+... ..++ ....+
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~-vtl~G 258 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPL-VTLEG 258 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCce-EEecc
Confidence 43 333459999999999999999999999999999999321 1112 23357
Q ss_pred CCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC
Q 007411 485 HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS 564 (604)
Q Consensus 485 ~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t 564 (604)
|..+|.++.|++ ...+++++.|.+|+.||+.++.....+.. .....++..+|..++|++|+.|..|++||.++
T Consensus 259 Ht~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~------~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~ 331 (423)
T KOG0313|consen 259 HTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT------NKSLNCISYSPLSKLLASGSSDRHIRLWDPRT 331 (423)
T ss_pred cccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec------CcceeEeecccccceeeecCCCCceeecCCCC
Confidence 999999999998 77899999999999999998765543332 34577899999999999999999999999987
Q ss_pred Ce---eEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007411 565 CK---VFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 565 ~~---~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
+. ...+|.+|.+-|.++.|+|.+..+|++++.||++++||
T Consensus 332 ~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWD 374 (423)
T KOG0313|consen 332 GDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWD 374 (423)
T ss_pred CCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEE
Confidence 53 46778899999999999998889999999999999998
No 105
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=2.3e-24 Score=209.62 Aligned_cols=268 Identities=20% Similarity=0.326 Sum_probs=220.1
Q ss_pred eeccCccccccceeecCCCccccCCCCcccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeE
Q 007411 272 FHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMR 351 (604)
Q Consensus 272 ~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~ 351 (604)
...++..|.+++.|-.. ...++.+|..|.+.|..|++.. ..+++++.|.+|+.|.+ .+.+++
T Consensus 81 ~~aSGs~DG~VkiWnls-------------qR~~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~wk~--~~~p~~ 142 (433)
T KOG0268|consen 81 TVASGSCDGEVKIWNLS-------------QRECIRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQWKI--DGPPLH 142 (433)
T ss_pred hhhccccCceEEEEehh-------------hhhhhheeecccCceeeEEecc---cceEEecCCcceeeeec--cCCcce
Confidence 34778889999988543 4467899999999999999975 57899999999999998 445777
Q ss_pred EecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCC-cceEEEEccCCCCCcEEEEEEcCCeEEEEeC
Q 007411 352 TYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDM 430 (604)
Q Consensus 352 ~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~-~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~ 430 (604)
++.+ ...+..|.-+..++.|+||+. .|.|||.....+++.+.-+. ...++.++|... .+|+++.+|+.|.+||+
T Consensus 143 tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvET--sILas~~sDrsIvLyD~ 217 (433)
T KOG0268|consen 143 TILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVET--SILASCASDRSIVLYDL 217 (433)
T ss_pred eeec-cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcc--hheeeeccCCceEEEec
Confidence 7754 345778887777889999985 69999999999999987654 456788888654 78899999999999999
Q ss_pred CCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeE
Q 007411 431 NTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQI 510 (604)
Q Consensus 431 ~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I 510 (604)
+++.+++.+. ....-+.|+|+|..-.|++++.|..++.||++...........|...|..+.|+|.|+-|++||.|.+|
T Consensus 218 R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksI 296 (433)
T KOG0268|consen 218 RQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSI 296 (433)
T ss_pred ccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceE
Confidence 9998877663 345668899999888999999999999999998766666666799999999999999999999999999
Q ss_pred EEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCee
Q 007411 511 LIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKV 567 (604)
Q Consensus 511 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~ 567 (604)
+||..+.+.......+ .....|.++.||.|.+||++|+.|+.|++|.....+.
T Consensus 297 RIf~~~~~~SRdiYht----kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asek 349 (433)
T KOG0268|consen 297 RIFPVNHGHSRDIYHT----KRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEK 349 (433)
T ss_pred EEeecCCCcchhhhhH----hhhheeeEEEEeccccEEEecCCCcceeeeecchhhh
Confidence 9999876543221111 1134578899999999999999999999998765443
No 106
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=9.4e-24 Score=211.50 Aligned_cols=254 Identities=19% Similarity=0.328 Sum_probs=201.7
Q ss_pred cCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCC---------eeeEEecCCCCceeeEEEcc-CCCEEEEEECCC
Q 007411 310 SGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG---------KCMRTYMGHSKAVRDISFCN-DGTKFLTASYDK 379 (604)
Q Consensus 310 ~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~---------~~~~~~~~h~~~V~~l~fsp-dg~~L~s~s~Dg 379 (604)
-.|.+.|+.+++.|++..++++++..+.|.|||..... .+-..+.+|.+.-.+|+|++ ..-.|++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 46999999999999989999999999999999984322 12236778888778888888 345788888888
Q ss_pred cEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCC-CCEE
Q 007411 380 NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS-NRRF 458 (604)
Q Consensus 380 ~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~-~~~l 458 (604)
.|++||+...... + ..-.....+.+|...|..++|++- ...|
T Consensus 201 ~i~lwdi~~~~~~-----------------------------~--------~~~~p~~~~~~h~~~VeDV~~h~~h~~lF 243 (422)
T KOG0264|consen 201 TICLWDINAESKE-----------------------------D--------KVVDPKTIFSGHEDVVEDVAWHPLHEDLF 243 (422)
T ss_pred cEEEEeccccccC-----------------------------C--------ccccceEEeecCCcceehhhccccchhhh
Confidence 8888887643211 0 011234567789999999999985 4578
Q ss_pred EEEeCCCcEEEEECCC-CeEEEEeecCCCCcccEEEEcCC-CCEEEEEEcCCeEEEEEcCCceeecccccccCcccccce
Q 007411 459 VTSSDDKSLRVWEFGI-PVVIKYISEPHMHSMPSISLHPN-TNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYA 536 (604)
Q Consensus 459 ~sgs~Dg~I~iwdl~~-~~~~~~~~~~~~~~v~~l~~sp~-g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v 536 (604)
+++++|+.+.|||+|+ ..........|...+.|++|+|- +..||+|+.|++|.+||+|+-.. ....+.+| ...|
T Consensus 244 ~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~--~lh~~e~H--~dev 319 (422)
T KOG0264|consen 244 GSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK--PLHTFEGH--EDEV 319 (422)
T ss_pred eeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc--CceeccCC--Ccce
Confidence 9999999999999996 33333344579999999999995 56789999999999999997543 45667777 6779
Q ss_pred EEEEEcCC-CCEEEEEcCCCcEEEEeCCCC--------------eeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEE
Q 007411 537 CQVNFSPD-GRFVMSGDGEGKCWFWDWKSC--------------KVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIK 601 (604)
Q Consensus 537 ~~l~~spd-g~~L~sgs~dG~I~iwd~~t~--------------~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~ 601 (604)
.++.|||+ ...|++++.|+++.+||+..- +++..-.+|...|..+.|+|.+.-.|+|.+.|+.+.
T Consensus 320 ~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~Lq 399 (422)
T KOG0264|consen 320 FQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQ 399 (422)
T ss_pred EEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEE
Confidence 99999996 557888999999999998642 234445589999999999999899999999999999
Q ss_pred EeC
Q 007411 602 YWD 604 (604)
Q Consensus 602 vWD 604 (604)
||.
T Consensus 400 IW~ 402 (422)
T KOG0264|consen 400 IWQ 402 (422)
T ss_pred Eee
Confidence 995
No 107
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=5.5e-23 Score=220.74 Aligned_cols=263 Identities=17% Similarity=0.313 Sum_probs=212.2
Q ss_pred CCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCc
Q 007411 311 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ 390 (604)
Q Consensus 311 gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~ 390 (604)
+|+.+-+.|+|.|+ |.+|++|+.||.|++|+.......-.++.-+...|.+++. .+++|++|+.+++|.+|.+..++
T Consensus 11 aht~G~t~i~~d~~-gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 11 AHTGGLTLICYDPD-GEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hccCceEEEEEcCC-CCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCC
Confidence 79999999999999 8899999999999999984442334444447888888877 45599999999999999998776
Q ss_pred E---EEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcE
Q 007411 391 V---IRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSL 467 (604)
Q Consensus 391 ~---i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I 467 (604)
. +.+|. -+..++++..++ .++++|+.|-.|++.++........+.+|.++|.++.|+|.+++|++.+.||.|
T Consensus 88 ~~~iL~Rft--lp~r~~~v~g~g---~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v 162 (933)
T KOG1274|consen 88 EDTILARFT--LPIRDLAVSGSG---KMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKV 162 (933)
T ss_pred ccceeeeee--ccceEEEEecCC---cEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceE
Confidence 4 33443 344566666543 689999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCeEEEEeecC-------CCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEE
Q 007411 468 RVWEFGIPVVIKYISEP-------HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVN 540 (604)
Q Consensus 468 ~iwdl~~~~~~~~~~~~-------~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~ 540 (604)
+|||+..+...+.+..- ....+..++|+|++..|++.+.|+.|.+|+..+......+ ........++.++
T Consensus 163 ~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~L---r~~~~ss~~~~~~ 239 (933)
T KOG1274|consen 163 QIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKL---RDKLSSSKFSDLQ 239 (933)
T ss_pred EEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheee---cccccccceEEEE
Confidence 99999988766655321 2345677999999999999999999999998876655333 2333344488999
Q ss_pred EcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCC
Q 007411 541 FSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQ 588 (604)
Q Consensus 541 ~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~ 588 (604)
|||+|.|||+++.+|.|.|||+++-.. .-....|++++|.|+.+
T Consensus 240 wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n 283 (933)
T KOG1274|consen 240 WSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNAN 283 (933)
T ss_pred EcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCC
Confidence 999999999999999999999998221 22245799999999543
No 108
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.92 E-value=9.3e-24 Score=218.43 Aligned_cols=278 Identities=19% Similarity=0.368 Sum_probs=215.0
Q ss_pred CCCCEEEEEECCCcEEEEecCCCC-----eeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEE--e-
Q 007411 324 KYGHLILSAGMDTKVKIWDVVNSG-----KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRT--F- 395 (604)
Q Consensus 324 ~~g~~L~sgs~Dg~I~IWd~~~~~-----~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~--~- 395 (604)
...++|+.+..||.|.++|..... ..+.....|...|.++.|.|...+|++++.|.++++||+.++.++.. +
T Consensus 62 n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~ 141 (720)
T KOG0321|consen 62 NKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNL 141 (720)
T ss_pred CccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeec
Confidence 346899999999999999983211 12455678999999999999778899999999999999999988765 2
Q ss_pred eCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCce---------------------------EEEEcCcCCceeE
Q 007411 396 STGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI---------------------------TQEYDQHLGAVNT 448 (604)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~---------------------------~~~~~~h~~~V~~ 448 (604)
.+......++|.+.+ ...|++|+.||.|.|||++-... +.....+...|.+
T Consensus 142 GH~~SvkS~cf~~~n--~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~s 219 (720)
T KOG0321|consen 142 GHTGSVKSECFMPTN--PAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFS 219 (720)
T ss_pred ccccccchhhhccCC--CcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceee
Confidence 222344566677654 48999999999999999974320 0111234444555
Q ss_pred ---EEEeCCCCEEEEEeC-CCcEEEEECCCCeEEEEeec-------CC---CCcccEEEEcCCCCEEEEEEcCCeEEEEE
Q 007411 449 ---ITFVDSNRRFVTSSD-DKSLRVWEFGIPVVIKYISE-------PH---MHSMPSISLHPNTNWLAAQSLDNQILIYS 514 (604)
Q Consensus 449 ---i~~sp~~~~l~sgs~-Dg~I~iwdl~~~~~~~~~~~-------~~---~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd 514 (604)
+.+..|...|++++. |+.|+|||++.......... .+ ...+.++.....|.+|.+.+.|+.|++|+
T Consensus 220 svTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~yn 299 (720)
T KOG0321|consen 220 SVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYN 299 (720)
T ss_pred eeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEe
Confidence 556667888998887 99999999987655433221 11 34577888888899999999999999999
Q ss_pred cCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCee-EEEEecCCCcEEEEEEecCCCCEEEE
Q 007411 515 TRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKV-FRTLKCHEGVCIGCEWHPLEQSKVAT 593 (604)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~-~~~l~~h~~~V~~v~~sp~~~~~l~t 593 (604)
+... .+.....+.++.+...-..-..+|++.+|++|+.|...++|.+.+.+. ...+.+|.-.|++++|.|....-++|
T Consensus 300 m~s~-s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~T 378 (720)
T KOG0321|consen 300 MRSL-SISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVAT 378 (720)
T ss_pred cccc-CcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCcee
Confidence 9763 344455666766655555667899999999999999999999988654 55677999999999999987788999
Q ss_pred EeCCCcEEEeC
Q 007411 594 CGWDGLIKYWD 604 (604)
Q Consensus 594 gg~DG~I~vWD 604 (604)
|+.|-.++||+
T Consensus 379 cSdD~~~kiW~ 389 (720)
T KOG0321|consen 379 CSDDFRVKIWR 389 (720)
T ss_pred eccCcceEEEe
Confidence 99999999996
No 109
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=5.6e-24 Score=213.36 Aligned_cols=250 Identities=20% Similarity=0.371 Sum_probs=209.0
Q ss_pred CcccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEEC
Q 007411 298 HCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASY 377 (604)
Q Consensus 298 ~~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~ 377 (604)
|.+.++...+...--.++|.|++-+|. |.+|+.|+..|.|++|.+ .+|..+..+.+|-..|+|+.|+.||.+|+|||.
T Consensus 66 w~i~k~~~~~q~~v~Pg~v~al~s~n~-G~~l~ag~i~g~lYlWel-ssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgsk 143 (476)
T KOG0646|consen 66 WEILKKDQVVQYIVLPGPVHALASSNL-GYFLLAGTISGNLYLWEL-SSGILLNVLSAHYQSITCLKFSDDGSHIITGSK 143 (476)
T ss_pred cccCchhhhhhhcccccceeeeecCCC-ceEEEeecccCcEEEEEe-ccccHHHHHHhhccceeEEEEeCCCcEEEecCC
Confidence 344444443333334678999999999 999999999999999999 799999999999999999999999999999999
Q ss_pred CCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCC--C
Q 007411 378 DKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS--N 455 (604)
Q Consensus 378 Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~--~ 455 (604)
||.|.+|.+.. ++....++ +-++...+..|.-+|+.+...+. .
T Consensus 144 Dg~V~vW~l~~---------------------------lv~a~~~~--------~~~p~~~f~~HtlsITDl~ig~Gg~~ 188 (476)
T KOG0646|consen 144 DGAVLVWLLTD---------------------------LVSADNDH--------SVKPLHIFSDHTLSITDLQIGSGGTN 188 (476)
T ss_pred CccEEEEEEEe---------------------------ecccccCC--------CccceeeeccCcceeEEEEecCCCcc
Confidence 99999998642 33333333 34567788899999999988765 4
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCce-------------eec
Q 007411 456 RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF-------------QLN 522 (604)
Q Consensus 456 ~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~-------------~~~ 522 (604)
.+++++|.|.++++||+..+..+..+. ...++.+++++|.+..+.+|+.+|.|.+.++.... ...
T Consensus 189 ~rl~TaS~D~t~k~wdlS~g~LLlti~--fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t 266 (476)
T KOG0646|consen 189 ARLYTASEDRTIKLWDLSLGVLLLTIT--FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENT 266 (476)
T ss_pred ceEEEecCCceEEEEEeccceeeEEEe--cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccc
Confidence 689999999999999999999988885 56689999999999999999999999998764322 112
Q ss_pred ccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecC
Q 007411 523 KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPL 586 (604)
Q Consensus 523 ~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~ 586 (604)
....+.||.....|+|++++-||.+|++|+.||.|+|||+.+.++++++....++|+.+.+.|.
T Consensus 267 ~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 267 QINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL 330 (476)
T ss_pred eeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence 3456778876678999999999999999999999999999999999999877889999999764
No 110
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.2e-23 Score=217.90 Aligned_cols=253 Identities=22% Similarity=0.335 Sum_probs=211.0
Q ss_pred cccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecC-CCCceeeEEEccCCCEEEEEEC
Q 007411 299 CYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMG-HSKAVRDISFCNDGTKFLTASY 377 (604)
Q Consensus 299 ~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~-h~~~V~~l~fspdg~~L~s~s~ 377 (604)
+....++......+...|+++.|+++ |.+|++|..+|.|.|||. ...+.++.+.+ |...|-+++|+ +..+.+|+.
T Consensus 203 ~~~s~~v~~l~~~~~~~vtSv~ws~~-G~~LavG~~~g~v~iwD~-~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr 278 (484)
T KOG0305|consen 203 SASSGSVTELCSFGEELVTSVKWSPD-GSHLAVGTSDGTVQIWDV-KEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSR 278 (484)
T ss_pred ecCCCceEEeEecCCCceEEEEECCC-CCEEEEeecCCeEEEEeh-hhccccccccCCcCceeEEEecc--CceEEEecC
Confidence 33344445555556899999999999 999999999999999999 67788888888 99999999997 678999999
Q ss_pred CCcEEEEECCCCcEEEEeeCCCcceE--EEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCC-
Q 007411 378 DKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS- 454 (604)
Q Consensus 378 Dg~I~vWD~~t~~~i~~~~~~~~~~~--~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~- 454 (604)
|+.|..+|++..+.......+|...+ +.|+++. .++++|+.|+.+.|||....++...+..|..+|..++|+|-
T Consensus 279 ~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~---~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q 355 (484)
T KOG0305|consen 279 DGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDG---NQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQ 355 (484)
T ss_pred CCcEEEEEEecchhhhhhhhcccceeeeeEECCCC---CeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCc
Confidence 99999999998876655333444444 4555443 78999999999999999999999999999999999999995
Q ss_pred CCEEEEE--eCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEE--EcCCeEEEEEcCCceeecccccccCc
Q 007411 455 NRRFVTS--SDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQ--SLDNQILIYSTRERFQLNKKKRFAGH 530 (604)
Q Consensus 455 ~~~l~sg--s~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~--s~Dg~I~iwd~~~~~~~~~~~~~~~~ 530 (604)
...|++| +.|+.|++||..++..+..+. ....|.+|.|++..+.|+++ ..++.|.||+..+. .....+.+|
T Consensus 356 ~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd--tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~---~~~~~l~gH 430 (484)
T KOG0305|consen 356 SGLLATGGGSADRCIKFWNTNTGARIDSVD--TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM---KLVAELLGH 430 (484)
T ss_pred cCceEEcCCCcccEEEEEEcCCCcEecccc--cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc---ceeeeecCC
Confidence 4577776 469999999999999888874 56789999999998877765 46688999999873 344667778
Q ss_pred ccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCC
Q 007411 531 IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC 565 (604)
Q Consensus 531 ~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~ 565 (604)
...|..+++||||..|++|+.|.+++||++-..
T Consensus 431 --~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 431 --TSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred --cceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 466999999999999999999999999998664
No 111
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.92 E-value=1e-23 Score=213.07 Aligned_cols=252 Identities=19% Similarity=0.268 Sum_probs=192.7
Q ss_pred eeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcE----EEEee--CCCcceEEEEccCCCCCcEEEEEEcC
Q 007411 349 CMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQV----IRTFS--TGKIPYVVKLNPDDDKQNILLAGMSD 422 (604)
Q Consensus 349 ~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~----i~~~~--~~~~~~~~~~~~~~~~~~~lvsg~~d 422 (604)
+-..+.+|+..|.++++.|.|.+|++|+.|.+|++||+..... .+.+. ..|.+.++.+++.+ ..|++.+..
T Consensus 159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg---~~iLvvsg~ 235 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTG---DQILVVSGS 235 (641)
T ss_pred ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCC---CeEEEEecC
Confidence 3445788999999999999999999999999999999975432 12221 24566777887754 467777778
Q ss_pred CeEEEEeCCCCceEEE------------EcCcCCceeEEEEeCCCC-EEEEEeCCCcEEEEECCCCeEEEE-e----ecC
Q 007411 423 KKIVQWDMNTKEITQE------------YDQHLGAVNTITFVDSNR-RFVTSSDDKSLRVWEFGIPVVIKY-I----SEP 484 (604)
Q Consensus 423 g~I~iwD~~s~~~~~~------------~~~h~~~V~~i~~sp~~~-~l~sgs~Dg~I~iwdl~~~~~~~~-~----~~~ 484 (604)
...+++|-...+.+.. .++|...++|.+|+|..+ .|++++.||+++|||+...+.... + ..+
T Consensus 236 aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g 315 (641)
T KOG0772|consen 236 AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGG 315 (641)
T ss_pred cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCC
Confidence 8999999654443322 257999999999999754 799999999999999976543222 2 123
Q ss_pred CCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC
Q 007411 485 HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS 564 (604)
Q Consensus 485 ~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t 564 (604)
..-+++.++|+|++++||+|+.||.|.+|+..+...-.....-..|.....|++|.||+||++|++-+.|+.+++||++.
T Consensus 316 ~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq 395 (641)
T KOG0772|consen 316 KRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQ 395 (641)
T ss_pred cccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccc
Confidence 45578999999999999999999999999986655444444556676666899999999999999999999999999987
Q ss_pred C-eeEEEEecCC--CcEEEEEEecCCCCEEEEEeC------CCcEEEeC
Q 007411 565 C-KVFRTLKCHE--GVCIGCEWHPLEQSKVATCGW------DGLIKYWD 604 (604)
Q Consensus 565 ~-~~~~~l~~h~--~~V~~v~~sp~~~~~l~tgg~------DG~I~vWD 604 (604)
. +++....+-. -+-+.|+|+| +..+|+||.. .|++.+||
T Consensus 396 ~kkpL~~~tgL~t~~~~tdc~FSP-d~kli~TGtS~~~~~~~g~L~f~d 443 (641)
T KOG0772|consen 396 FKKPLNVRTGLPTPFPGTDCCFSP-DDKLILTGTSAPNGMTAGTLFFFD 443 (641)
T ss_pred cccchhhhcCCCccCCCCccccCC-CceEEEecccccCCCCCceEEEEe
Confidence 4 4455444322 2457899999 6778888875 45676665
No 112
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=3.5e-23 Score=207.28 Aligned_cols=243 Identities=19% Similarity=0.389 Sum_probs=197.9
Q ss_pred ccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCC
Q 007411 300 YIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDK 379 (604)
Q Consensus 300 ~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg 379 (604)
+.|.+.-+ ++|...|.+++.+++ +++|++|+.|..|.||+. .+.+.+..+.+|.+.|.+++|-.....|++++.|+
T Consensus 191 ~~~~k~~r--~~h~keil~~avS~D-gkylatgg~d~~v~Iw~~-~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Dr 266 (479)
T KOG0299|consen 191 GNPLKESR--KGHVKEILTLAVSSD-GKYLATGGRDRHVQIWDC-DTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADR 266 (479)
T ss_pred cCCCCccc--ccccceeEEEEEcCC-CcEEEecCCCceEEEecC-cccchhhcccccccceeeeeeecCccceeeeecCC
Confidence 44445444 599999999999999 999999999999999999 78999999999999999999998888999999999
Q ss_pred cEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEE
Q 007411 380 NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFV 459 (604)
Q Consensus 380 ~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~ 459 (604)
.|++|+++....+.++-.+ ...+..+.... .+..+.+|+.|.++++|++.. +....+.+|.+.+-|++|..+ ..|+
T Consensus 267 svkvw~~~~~s~vetlyGH-qd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~-~Hfv 342 (479)
T KOG0299|consen 267 SVKVWSIDQLSYVETLYGH-QDGVLGIDALS-RERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFIND-EHFV 342 (479)
T ss_pred ceEEEehhHhHHHHHHhCC-ccceeeechhc-ccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEecc-ccee
Confidence 9999999987777666443 33344443332 346788888999999999943 344567789999999999854 5899
Q ss_pred EEeCCCcEEEEECCCCeEEEEeecCCC-----------CcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeccccccc
Q 007411 460 TSSDDKSLRVWEFGIPVVIKYISEPHM-----------HSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFA 528 (604)
Q Consensus 460 sgs~Dg~I~iwdl~~~~~~~~~~~~~~-----------~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~ 528 (604)
+||++|.|.+|++-+.+++.....+|. .-|++++..|...++++|+.+|.|++|-+..+... +..+.
T Consensus 343 sGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~--i~~l~ 420 (479)
T KOG0299|consen 343 SGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRA--INLLY 420 (479)
T ss_pred eccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccc--cceee
Confidence 999999999999998888776654432 15789999999999999999999999999877432 22233
Q ss_pred CcccccceEEEEEcCCCCEEEEEc
Q 007411 529 GHIVAGYACQVNFSPDGRFVMSGD 552 (604)
Q Consensus 529 ~~~~~~~v~~l~~spdg~~L~sgs 552 (604)
.....+.|+.++|+++|+.|++|.
T Consensus 421 ~ls~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 421 SLSLVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred ecccccEEEEEEEccCCCEEEEec
Confidence 333468899999999999877774
No 113
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=5.4e-22 Score=181.75 Aligned_cols=257 Identities=19% Similarity=0.286 Sum_probs=203.4
Q ss_pred ccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCC----eeeEEecCCCCceeeEEEcc----CCCE
Q 007411 300 YIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG----KCMRTYMGHSKAVRDISFCN----DGTK 371 (604)
Q Consensus 300 ~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~----~~~~~~~~h~~~V~~l~fsp----dg~~ 371 (604)
+.|.-+...-+-|.+.|+|.+|+|. |.+|++|+.|.+|++.-+.... ..-..+.-|.+.|++++|.. .|..
T Consensus 76 ~pp~v~~kr~khhkgsiyc~~ws~~-geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~i 154 (350)
T KOG0641|consen 76 QPPSVLCKRNKHHKGSIYCTAWSPC-GELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAI 154 (350)
T ss_pred CCCeEEeeeccccCccEEEEEecCc-cCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceE
Confidence 3444455566778999999999999 9999999999999998763211 12234667999999999975 3556
Q ss_pred EEEEEC-CCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcC--c-----C
Q 007411 372 FLTASY-DKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ--H-----L 443 (604)
Q Consensus 372 L~s~s~-Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~--h-----~ 443 (604)
|++++. |..|.+-|..+|+....+..+.........+++ -+|++|+.|.+|++||++-...+.++.. | .
T Consensus 155 l~s~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn~---~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~gles 231 (350)
T KOG0641|consen 155 LASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWNG---AMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLES 231 (350)
T ss_pred EEecCCCcceEEEeecCCCCcceeecCCcccEEEEEEecC---cEEEccCCCceEEEEeeeccceeeeccCcccCCCccc
Confidence 777654 678888899999999888655443333344433 6899999999999999999888887642 2 3
Q ss_pred CceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeec-
Q 007411 444 GAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN- 522 (604)
Q Consensus 444 ~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~- 522 (604)
+.|.++++.|.|++|++|-.|.+..+||++.+..+..+. +|...|.|+.|+|...|+++++.|..|++-|+.....-.
T Consensus 232 savaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~-phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el 310 (350)
T KOG0641|consen 232 SAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFH-PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHEL 310 (350)
T ss_pred ceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeC-CCccceeEEEeCCCceEEEEecccceEEEeecccchhhcC
Confidence 579999999999999999999999999999999998875 699999999999999999999999999999987532111
Q ss_pred ccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCC
Q 007411 523 KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 563 (604)
Q Consensus 523 ~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~ 563 (604)
.......| ...+..+.|+|..--+++.+.|.++.+|-+.
T Consensus 311 ~~~vv~eh--kdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 311 PIMVVAEH--KDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ceEEEEec--cCceEEEEecCccceeeeccCcceEEEeccC
Confidence 11122233 4557779999999889999999999999753
No 114
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=1.6e-22 Score=192.90 Aligned_cols=238 Identities=20% Similarity=0.304 Sum_probs=187.4
Q ss_pred CCCCceeeEEEcc-CCCEEEEEECCCcEEEEECCC-CcEEEEee--CCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeC
Q 007411 355 GHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTET-GQVIRTFS--TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDM 430 (604)
Q Consensus 355 ~h~~~V~~l~fsp-dg~~L~s~s~Dg~I~vWD~~t-~~~i~~~~--~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~ 430 (604)
.....|.+|+||| ...+|+.+|.|++||+|+++. |..+.... ...++.+++|+-++ ..+++|+.|+.+++||+
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddg---skVf~g~~Dk~~k~wDL 101 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDG---SKVFSGGCDKQAKLWDL 101 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCC---ceEEeeccCCceEEEEc
Confidence 4567899999999 556677999999999999986 44443332 34455566666544 67999999999999999
Q ss_pred CCCceEEEEcCcCCceeEEEEeCCCC--EEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCC
Q 007411 431 NTKEITQEYDQHLGAVNTITFVDSNR--RFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN 508 (604)
Q Consensus 431 ~s~~~~~~~~~h~~~V~~i~~sp~~~--~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg 508 (604)
.+++ +..+..|.++|.++.|.+... .|++||.|++|++||.+...++..+..+. .+.++.+ -..+++++..+.
T Consensus 102 ~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe--RvYa~Dv--~~pm~vVata~r 176 (347)
T KOG0647|consen 102 ASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE--RVYAADV--LYPMAVVATAER 176 (347)
T ss_pred cCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc--eeeehhc--cCceeEEEecCC
Confidence 9994 556668999999999998766 89999999999999999999988886533 3444433 356788999999
Q ss_pred eEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCC--eeEEEEecCCC---------c
Q 007411 509 QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC--KVFRTLKCHEG---------V 577 (604)
Q Consensus 509 ~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~--~~~~~l~~h~~---------~ 577 (604)
.|.+|++++.... .+..... ..-.+.++++.+|....+.|+-+|++.|..+..+ +.-.+|++|.. .
T Consensus 177 ~i~vynL~n~~te--~k~~~Sp-Lk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYa 253 (347)
T KOG0647|consen 177 HIAVYNLENPPTE--FKRIESP-LKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYA 253 (347)
T ss_pred cEEEEEcCCCcch--hhhhcCc-ccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEE
Confidence 9999999765332 2222222 2345778999898888899999999999999876 55667788863 5
Q ss_pred EEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007411 578 CIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 578 V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
|++|+|+| -...|+|+|.||++.+||
T Consensus 254 VNsi~FhP-~hgtlvTaGsDGtf~FWD 279 (347)
T KOG0647|consen 254 VNSIAFHP-VHGTLVTAGSDGTFSFWD 279 (347)
T ss_pred ecceEeec-ccceEEEecCCceEEEec
Confidence 78899999 556899999999999998
No 115
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=1.1e-22 Score=209.00 Aligned_cols=293 Identities=20% Similarity=0.334 Sum_probs=225.1
Q ss_pred CcccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCC-EEEEEE
Q 007411 298 HCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGT-KFLTAS 376 (604)
Q Consensus 298 ~~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~-~L~s~s 376 (604)
..-+|..+-..++||++.|.||...|. |.+|++|+.||+|+||.+ .++.|++++. ..+.|.||+|+|.+. .++.++
T Consensus 385 LrPFPt~~~lvyrGHtg~Vr~iSvdp~-G~wlasGsdDGtvriWEi-~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA 461 (733)
T KOG0650|consen 385 LRPFPTRCALVYRGHTGLVRSISVDPS-GEWLASGSDDGTVRIWEI-ATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVA 461 (733)
T ss_pred cCCCcceeeeeEeccCCeEEEEEecCC-cceeeecCCCCcEEEEEe-ecceEEEEEe-ecceeEEEEecCCCCceeEEEE
Confidence 334667788899999999999999998 999999999999999999 7999999886 456899999999654 334444
Q ss_pred CCCcEEEEECCCCcE--------------------------------------EEEeeCCCcceEEEEccCCCCCcEEEE
Q 007411 377 YDKNIKYWDTETGQV--------------------------------------IRTFSTGKIPYVVKLNPDDDKQNILLA 418 (604)
Q Consensus 377 ~Dg~I~vWD~~t~~~--------------------------------------i~~~~~~~~~~~~~~~~~~~~~~~lvs 418 (604)
....+.|-+..-|.. ...+.....+..+.|+.. +.+|++
T Consensus 462 ~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrk---GDYlat 538 (733)
T KOG0650|consen 462 VGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRK---GDYLAT 538 (733)
T ss_pred ecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecC---CceEEE
Confidence 445566655432210 111222333334444443 356776
Q ss_pred EEc---CCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEc
Q 007411 419 GMS---DKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLH 495 (604)
Q Consensus 419 g~~---dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~s 495 (604)
.+. ...|.|+++.......-|....+.|.++.|+|...+|++++. ..|+|||+.....++.+.. ...-|..+++|
T Consensus 539 V~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~t-g~kwiS~msih 616 (733)
T KOG0650|consen 539 VMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLT-GSKWISSMSIH 616 (733)
T ss_pred eccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhc-CCeeeeeeeec
Confidence 654 467999999877766667667889999999999999988875 7799999988776666643 55678999999
Q ss_pred CCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCC------C---Ce
Q 007411 496 PNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK------S---CK 566 (604)
Q Consensus 496 p~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~------t---~~ 566 (604)
|.|.-|++++.|+.+..||+.-.... .+.+.-| ...+++++|++.-.++++|+.||.+.|+--. . --
T Consensus 617 p~GDnli~gs~d~k~~WfDldlsskP--yk~lr~H--~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliV 692 (733)
T KOG0650|consen 617 PNGDNLILGSYDKKMCWFDLDLSSKP--YKTLRLH--EKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIV 692 (733)
T ss_pred CCCCeEEEecCCCeeEEEEcccCcch--hHHhhhh--hhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceE
Confidence 99999999999999999998754332 3445555 4567889999999999999999999998531 1 23
Q ss_pred eEEEEecCCCc----EEEEEEecCCCCEEEEEeCCCcEEEe
Q 007411 567 VFRTLKCHEGV----CIGCEWHPLEQSKVATCGWDGLIKYW 603 (604)
Q Consensus 567 ~~~~l~~h~~~----V~~v~~sp~~~~~l~tgg~DG~I~vW 603 (604)
++..+++|... |..+.||| ...+|+++|.||+|++|
T Consensus 693 PlK~L~gH~~~~~~gVLd~~wHP-~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 693 PLKRLRGHEKTNDLGVLDTIWHP-RQPWLFSAGADGTIRLF 732 (733)
T ss_pred eeeeccCceeecccceEeecccC-CCceEEecCCCceEEee
Confidence 46778888765 89999999 67799999999999998
No 116
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.91 E-value=2.8e-22 Score=219.61 Aligned_cols=288 Identities=17% Similarity=0.259 Sum_probs=224.1
Q ss_pred cCcceeeccCc--cccccceeecCCCccccCCCCcccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecC
Q 007411 267 EDKSTFHGKEE--TDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVV 344 (604)
Q Consensus 267 ~~~s~~~~~~~--~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~ 344 (604)
++...-.++++ .|...|.|-..+-..+.. +++..-++.+.+...|.+.|+|++|+|+ |.+||+||.|+.|.||...
T Consensus 22 ~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~-~~~~~l~k~l~~m~~h~~sv~CVR~S~d-G~~lAsGSDD~~v~iW~~~ 99 (942)
T KOG0973|consen 22 HPDGVKFATGGQVLDGGIVIWSQDPVLDEKE-EKNENLPKHLCTMDDHDGSVNCVRFSPD-GSYLASGSDDRLVMIWERA 99 (942)
T ss_pred cCCceeEecCCccccccceeeccccccchhh-hhhcccchhheeeccccCceeEEEECCC-CCeEeeccCcceEEEeeec
Confidence 33333445555 677788897766553221 2222245677788899999999999999 9999999999999999974
Q ss_pred C-----------------CCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCc-ceEEEE
Q 007411 345 N-----------------SGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKI-PYVVKL 406 (604)
Q Consensus 345 ~-----------------~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~-~~~~~~ 406 (604)
. .-+++..+.+|...|.+++|+|++.+|++++.|++|.||+..+.+.+..+..+.. +.-+.|
T Consensus 100 ~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~ 179 (942)
T KOG0973|consen 100 EIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSW 179 (942)
T ss_pred ccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEE
Confidence 1 1147788999999999999999999999999999999999999988888866543 445667
Q ss_pred ccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCC------ceeEEEEeCCCCEEEEEeC----CCcEEEEECCCCe
Q 007411 407 NPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLG------AVNTITFVDSNRRFVTSSD----DKSLRVWEFGIPV 476 (604)
Q Consensus 407 ~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~------~V~~i~~sp~~~~l~sgs~----Dg~I~iwdl~~~~ 476 (604)
.|.+ .+|++-+.|++|++|.+.+-.+...+..+.. -+..+.|+|+|.+|++.-. -.++.|.+-.+-.
T Consensus 180 DP~G---ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk 256 (942)
T KOG0973|consen 180 DPIG---KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWK 256 (942)
T ss_pred CCcc---CeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCce
Confidence 6654 7999999999999999887767776655443 4678999999999998642 3467787765555
Q ss_pred EEEEeecCCCCcccEEEEcCC-------------CC----EEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEE
Q 007411 477 VIKYISEPHMHSMPSISLHPN-------------TN----WLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQV 539 (604)
Q Consensus 477 ~~~~~~~~~~~~v~~l~~sp~-------------g~----~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l 539 (604)
.-..+. +|..++.++.|+|. .. .+|+|+.|++|.||......++.....+. ...|..+
T Consensus 257 ~~~~Lv-GH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf----~~SI~Dm 331 (942)
T KOG0973|consen 257 VDKDLV-GHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLF----NKSIVDM 331 (942)
T ss_pred eeeeee-cCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhh----cCceeee
Confidence 444443 68899999999982 11 68899999999999986655554333332 4568899
Q ss_pred EEcCCCCEEEEEcCCCcEEEEeCCC
Q 007411 540 NFSPDGRFVMSGDGEGKCWFWDWKS 564 (604)
Q Consensus 540 ~~spdg~~L~sgs~dG~I~iwd~~t 564 (604)
+|+|||..|++++.||+|.++.+..
T Consensus 332 sWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 332 SWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred eEcCCCCeEEEEecCCeEEEEEcch
Confidence 9999999999999999999998764
No 117
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=3.2e-22 Score=191.61 Aligned_cols=236 Identities=19% Similarity=0.328 Sum_probs=195.5
Q ss_pred CCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCce
Q 007411 356 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI 435 (604)
Q Consensus 356 h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~ 435 (604)
....|.+|.|+|.++.|++++.||++++||+........+....+...++|... ..+++|+.||.|+.+|+.++..
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~----~~~~~G~~dg~vr~~Dln~~~~ 87 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADE----STIVTGGLDGQVRRYDLNTGNE 87 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCC----ceEEEeccCceEEEEEecCCcc
Confidence 467899999999999999999999999999999988888888888888888774 4599999999999999998865
Q ss_pred EEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEc
Q 007411 436 TQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYST 515 (604)
Q Consensus 436 ~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~ 515 (604)
. .+..|..+|.||..++....+++||.|++|++||.+.......+.. ...|.++.. .++.|++|+.+..|.+||+
T Consensus 88 ~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~--~kkVy~~~v--~g~~LvVg~~~r~v~iyDL 162 (323)
T KOG1036|consen 88 D-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ--GKKVYCMDV--SGNRLVVGTSDRKVLIYDL 162 (323)
T ss_pred e-eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc--CceEEEEec--cCCEEEEeecCceEEEEEc
Confidence 4 4456999999999999989999999999999999998666555543 336766665 5788999999999999999
Q ss_pred CCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCC----eeEEEEecCCC---------cEEEEE
Q 007411 516 RERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC----KVFRTLKCHEG---------VCIGCE 582 (604)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~----~~~~~l~~h~~---------~V~~v~ 582 (604)
++........ .....-.+.++++-|++.-.++++-+|+|.+=.+... +....|++|.. +|++++
T Consensus 163 Rn~~~~~q~r---eS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~ 239 (323)
T KOG1036|consen 163 RNLDEPFQRR---ESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIA 239 (323)
T ss_pred ccccchhhhc---cccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeE
Confidence 9865443211 2223456788999998888999999999998776655 45566777753 799999
Q ss_pred EecCCCCEEEEEeCCCcEEEeC
Q 007411 583 WHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 583 ~sp~~~~~l~tgg~DG~I~vWD 604 (604)
||| -...|+|||.||.|.+||
T Consensus 240 Fhp-~~~tfaTgGsDG~V~~Wd 260 (323)
T KOG1036|consen 240 FHP-IHGTFATGGSDGIVNIWD 260 (323)
T ss_pred ecc-ccceEEecCCCceEEEcc
Confidence 999 466899999999999998
No 118
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.90 E-value=3e-23 Score=198.80 Aligned_cols=291 Identities=16% Similarity=0.292 Sum_probs=230.4
Q ss_pred hccCCCCCCccccCcceeeccCccccccceeecCCCccccCCCCcccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEEC
Q 007411 255 KGNAGGEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGM 334 (604)
Q Consensus 255 ~~~~~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~ 334 (604)
.+.+.-.+...+++...|..+...|.-...|......++..- ..+..-.|--|..+|.|+.|+.+ ..+|++|+.
T Consensus 210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDL-----kYQAqd~fMMmd~aVlci~FSRD-sEMlAsGsq 283 (508)
T KOG0275|consen 210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDL-----KYQAQDNFMMMDDAVLCISFSRD-SEMLASGSQ 283 (508)
T ss_pred cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhh-----hhhhhcceeecccceEEEeeccc-HHHhhccCc
Confidence 344444455667888888888888887777766544332111 11223345568999999999999 899999999
Q ss_pred CCcEEEEecCCCCeeeEEec-CCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcc-eEEEEccCCCC
Q 007411 335 DTKVKIWDVVNSGKCMRTYM-GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP-YVVKLNPDDDK 412 (604)
Q Consensus 335 Dg~I~IWd~~~~~~~~~~~~-~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~-~~~~~~~~~~~ 412 (604)
||.|+||.+ .++.|++.|. .|+..|+|+.|+.|+..+++++.|.+++|.-+.+|+++..|..+..- .-..|.+ +
T Consensus 284 DGkIKvWri-~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~---d 359 (508)
T KOG0275|consen 284 DGKIKVWRI-ETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTD---D 359 (508)
T ss_pred CCcEEEEEE-ecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcC---C
Confidence 999999999 7999999887 89999999999999999999999999999999999999999765432 2344444 3
Q ss_pred CcEEEEEEcCCeEEEEeCCCCceEEEEcC--cCCceeEEEEeCC-CCEEEEEeCCCcEEEEECCCCeEEEEeecC--CCC
Q 007411 413 QNILLAGMSDKKIVQWDMNTKEITQEYDQ--HLGAVNTITFVDS-NRRFVTSSDDKSLRVWEFGIPVVIKYISEP--HMH 487 (604)
Q Consensus 413 ~~~lvsg~~dg~I~iwD~~s~~~~~~~~~--h~~~V~~i~~sp~-~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~--~~~ 487 (604)
++.++++++||+|++|+..+.+++.+++. ...+|+++...|. ...+++|...++|+|.++. ++.++.+..+ ..+
T Consensus 360 G~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgG 438 (508)
T KOG0275|consen 360 GHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGG 438 (508)
T ss_pred CCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCC
Confidence 47899999999999999999999998864 3457888888775 4578999999999999985 4555555443 344
Q ss_pred cccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEe
Q 007411 488 SMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 561 (604)
Q Consensus 488 ~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd 561 (604)
...+.+++|.|.++.+.+.|+.++.|...++...... .-| ...+..++-+|..+.|++-+.||.+++|.
T Consensus 439 dFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl---~Vh--EkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 439 DFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTL---PVH--EKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeee---ecc--cccccccccCcccchhhhhcccchhhhcC
Confidence 5777889999999999999999999998887654322 223 34566799999999999999999999994
No 119
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.90 E-value=2.2e-21 Score=206.33 Aligned_cols=288 Identities=17% Similarity=0.303 Sum_probs=232.0
Q ss_pred CCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCc
Q 007411 311 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ 390 (604)
Q Consensus 311 gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~ 390 (604)
.-.+.|++|.--+..-+-++.|+..|.+.||++ .+++.+.+++++...|+++.=+|-=..++.|..+|+|.|++++.++
T Consensus 157 ~~~~~Ital~HP~TYLNKIvvGs~~G~lql~Nv-rt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dk 235 (910)
T KOG1539|consen 157 VEGDFITALLHPSTYLNKIVVGSSQGRLQLWNV-RTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDK 235 (910)
T ss_pred ccCCceeeEecchhheeeEEEeecCCcEEEEEe-ccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCc
Confidence 333348888533333456899999999999999 7999999999999999999999977799999999999999999999
Q ss_pred EEEEeeCC-CcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEc-CcCCceeEEEEeCCCCEEEEEeCCCcEE
Q 007411 391 VIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYD-QHLGAVNTITFVDSNRRFVTSSDDKSLR 468 (604)
Q Consensus 391 ~i~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~-~h~~~V~~i~~sp~~~~l~sgs~Dg~I~ 468 (604)
.+.+|+.. ..+..+.|..++ ..++++|+..|.+.+||+...+++.... .|.+.|..+.|.+....+++++.|++++
T Consensus 236 il~sFk~d~g~VtslSFrtDG--~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk 313 (910)
T KOG1539|consen 236 ILMSFKQDWGRVTSLSFRTDG--NPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLK 313 (910)
T ss_pred EEEEEEccccceeEEEeccCC--CeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCcee
Confidence 99999986 666666776654 4789999999999999999888776655 7889999999999888899988888887
Q ss_pred EEECCCCe-----------------EEEEe--------------------------------------------------
Q 007411 469 VWEFGIPV-----------------VIKYI-------------------------------------------------- 481 (604)
Q Consensus 469 iwdl~~~~-----------------~~~~~-------------------------------------------------- 481 (604)
+|=.+++. +++..
T Consensus 314 ~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~ 393 (910)
T KOG1539|consen 314 VWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKL 393 (910)
T ss_pred EEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhh
Confidence 77433100 00000
Q ss_pred --------------------------------------------ecC------CCCcccEEEEcCCCCEEEEEEcCCeEE
Q 007411 482 --------------------------------------------SEP------HMHSMPSISLHPNTNWLAAQSLDNQIL 511 (604)
Q Consensus 482 --------------------------------------------~~~------~~~~v~~l~~sp~g~~l~s~s~Dg~I~ 511 (604)
... ....+++++.++.|++.+.|+..|.|-
T Consensus 394 k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id 473 (910)
T KOG1539|consen 394 KLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTID 473 (910)
T ss_pred cCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEE
Confidence 000 114577899999999999999999999
Q ss_pred EEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCe-------------------------
Q 007411 512 IYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCK------------------------- 566 (604)
Q Consensus 512 iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~------------------------- 566 (604)
+|++.++........-..| .+.|+.++...-++.+++++.+|.+.+||.+...
T Consensus 474 ~fNmQSGi~r~sf~~~~ah--~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~ 551 (910)
T KOG1539|consen 474 RFNMQSGIHRKSFGDSPAH--KGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAI 551 (910)
T ss_pred EEEcccCeeecccccCccc--cCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhh
Confidence 9999987655443322344 6789999998889999999999999999976533
Q ss_pred ----------------eEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007411 567 ----------------VFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 567 ----------------~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
.++.+.+|.+.|++++||| ++++|++++.|++|++||
T Consensus 552 ~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~-DgrWlisasmD~tIr~wD 604 (910)
T KOG1539|consen 552 ALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSP-DGRWLISASMDSTIRTWD 604 (910)
T ss_pred hcCceeEEEEEchhhhhhHHhhccccceeeeEeCC-CCcEEEEeecCCcEEEEe
Confidence 2334567999999999999 889999999999999998
No 120
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.90 E-value=2.4e-23 Score=198.63 Aligned_cols=224 Identities=21% Similarity=0.363 Sum_probs=180.9
Q ss_pred eEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEe
Q 007411 350 MRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWD 429 (604)
Q Consensus 350 ~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD 429 (604)
...+..|..++++.+|++||.++++|+.|..|+|.|++..-..... .-+..|..+.
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~------------------~em~~~~~qa------ 160 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKP------------------KEMISGDTQA------ 160 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcch------------------hhhccCCccc------
Confidence 3456789999999999999999999999999999998742111000 0011111110
Q ss_pred CCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeE---EEEeecCCCCcccEEEEcCCCCEEEEEEc
Q 007411 430 MNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVV---IKYISEPHMHSMPSISLHPNTNWLAAQSL 506 (604)
Q Consensus 430 ~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~---~~~~~~~~~~~v~~l~~sp~g~~l~s~s~ 506 (604)
..-.++++-.|...|+++.|+|....|++|+.|++|++||+..... .+.+ ....+|.+++|||.|.+|++|..
T Consensus 161 --~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~--qd~~~vrsiSfHPsGefllvgTd 236 (430)
T KOG0640|consen 161 --RHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVF--QDTEPVRSISFHPSGEFLLVGTD 236 (430)
T ss_pred --CCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHh--hccceeeeEeecCCCceEEEecC
Confidence 0235677778999999999999999999999999999999976532 2333 24568999999999999999999
Q ss_pred CCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEe-cCCC-cEEEEEEe
Q 007411 507 DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK-CHEG-VCIGCEWH 584 (604)
Q Consensus 507 Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~-~h~~-~V~~v~~s 584 (604)
...+++||+.+.++......-.+| .+.|+++.+|+.|++.++|+.||.|++||--+++|+.++. +|.+ .|.+..|.
T Consensus 237 Hp~~rlYdv~T~QcfvsanPd~qh--t~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ft 314 (430)
T KOG0640|consen 237 HPTLRLYDVNTYQCFVSANPDDQH--TGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFT 314 (430)
T ss_pred CCceeEEeccceeEeeecCccccc--ccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEc
Confidence 999999999987766544433444 6789999999999999999999999999999999999886 6765 68888999
Q ss_pred cCCCCEEEEEeCCCcEEEeC
Q 007411 585 PLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 585 p~~~~~l~tgg~DG~I~vWD 604 (604)
. ++.+|++.|.|..+++|.
T Consensus 315 k-n~kyiLsSG~DS~vkLWE 333 (430)
T KOG0640|consen 315 K-NGKYILSSGKDSTVKLWE 333 (430)
T ss_pred c-CCeEEeecCCcceeeeee
Confidence 8 889999999999999995
No 121
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=1.7e-20 Score=191.15 Aligned_cols=267 Identities=17% Similarity=0.205 Sum_probs=198.9
Q ss_pred ceeEEecCCCCCeEEEEEcCCCCCEE-EEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEE-ECCCcE
Q 007411 304 RLVHTWSGHTKGVSAIRFFPKYGHLI-LSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTA-SYDKNI 381 (604)
Q Consensus 304 ~~i~tl~gH~~~V~~l~fsp~~g~~L-~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~-s~Dg~I 381 (604)
+++.++.+|.. +.+++|+|+ +..+ ++++.++.|++||+ .+++.+..+..+.. +..++|+|+++.++++ +.++.|
T Consensus 22 ~~~~~~~~~~~-~~~l~~~~d-g~~l~~~~~~~~~v~~~d~-~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l 97 (300)
T TIGR03866 22 EVTRTFPVGQR-PRGITLSKD-GKLLYVCASDSDTIQVIDL-ATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLV 97 (300)
T ss_pred ceEEEEECCCC-CCceEECCC-CCEEEEEECCCCeEEEEEC-CCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeE
Confidence 45667776654 678999999 6655 67788999999999 56677766665544 5788999999877655 568999
Q ss_pred EEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCC-eEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEE
Q 007411 382 KYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK-KIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVT 460 (604)
Q Consensus 382 ~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg-~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~s 460 (604)
++||+.+++.+..+..+..+..+.+.+++ .+++++..++ .+.+||..+++....+.. ...+.++.|++++++|++
T Consensus 98 ~~~d~~~~~~~~~~~~~~~~~~~~~~~dg---~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~ 173 (300)
T TIGR03866 98 TVIDIETRKVLAEIPVGVEPEGMAVSPDG---KIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWV 173 (300)
T ss_pred EEEECCCCeEEeEeeCCCCcceEEECCCC---CEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEE
Confidence 99999999888888766666777787754 5677776654 577889998877665432 345678999999998865
Q ss_pred E-eCCCcEEEEECCCCeEEEEeecC------CCCcccEEEEcCCCCEEEEE-EcCCeEEEEEcCCceeecccccccCccc
Q 007411 461 S-SDDKSLRVWEFGIPVVIKYISEP------HMHSMPSISLHPNTNWLAAQ-SLDNQILIYSTRERFQLNKKKRFAGHIV 532 (604)
Q Consensus 461 g-s~Dg~I~iwdl~~~~~~~~~~~~------~~~~v~~l~~sp~g~~l~s~-s~Dg~I~iwd~~~~~~~~~~~~~~~~~~ 532 (604)
+ ..++.|++||+.+...+..+... .......++|+|++++++++ +.++.|.+||+.+........ .
T Consensus 174 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~---- 247 (300)
T TIGR03866 174 SSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL--V---- 247 (300)
T ss_pred EcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE--e----
Confidence 5 46899999999988776655321 11123468899999986554 456789999997754432211 1
Q ss_pred ccceEEEEEcCCCCEEEEEc-CCCcEEEEeCCCCeeEEEEecCCCcEEEEEEec
Q 007411 533 AGYACQVNFSPDGRFVMSGD-GEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHP 585 (604)
Q Consensus 533 ~~~v~~l~~spdg~~L~sgs-~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp 585 (604)
...+.+++|+|+|++|+++. .+|.|.+||+.+++++..++.. ...++++++|
T Consensus 248 ~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 248 GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred CCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 23467899999999998864 6899999999999999999865 4458888875
No 122
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.90 E-value=1.1e-21 Score=204.95 Aligned_cols=293 Identities=22% Similarity=0.391 Sum_probs=223.1
Q ss_pred CcceeEEecCCCCCeEEEEEcCCCC--CEEEEEECCCcEEEEecCCCC--------------------eee---------
Q 007411 302 PKRLVHTWSGHTKGVSAIRFFPKYG--HLILSAGMDTKVKIWDVVNSG--------------------KCM--------- 350 (604)
Q Consensus 302 p~~~i~tl~gH~~~V~~l~fsp~~g--~~L~sgs~Dg~I~IWd~~~~~--------------------~~~--------- 350 (604)
..+.+..+.||++.|.+|+|...++ -+|+|+|.|..|+||.+...+ ...
T Consensus 180 ~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ 259 (764)
T KOG1063|consen 180 SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISF 259 (764)
T ss_pred ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEeh
Confidence 3467889999999999999987633 478999999999999884222 111
Q ss_pred -EEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCC--cEEEEeeCCC----c--ceEEEEccCCCCCcEEEEEEc
Q 007411 351 -RTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG--QVIRTFSTGK----I--PYVVKLNPDDDKQNILLAGMS 421 (604)
Q Consensus 351 -~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~--~~i~~~~~~~----~--~~~~~~~~~~~~~~~lvsg~~ 421 (604)
..+.||...|+++.|+|.+..|++++.|.++.+|...+. --+.....+. . -+...|+++. +.+++-+.
T Consensus 260 eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~---~~ii~~g~ 336 (764)
T KOG1063|consen 260 EALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNS---NVIIAHGR 336 (764)
T ss_pred hhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCC---CEEEEecc
Confidence 123499999999999999999999999999999987654 3333333222 2 2345556544 68999999
Q ss_pred CCeEEEEeCCCC---ceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECC----------CC-------------
Q 007411 422 DKKIVQWDMNTK---EITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFG----------IP------------- 475 (604)
Q Consensus 422 dg~I~iwD~~s~---~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~----------~~------------- 475 (604)
.|..++|-.... .....+.+|...|..++|.|.|.+|++.|.|-+-|+|--- .+
T Consensus 337 ~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~v 416 (764)
T KOG1063|consen 337 TGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFV 416 (764)
T ss_pred cCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehc
Confidence 999999984332 2334567899999999999999999999988877775321 00
Q ss_pred ------------eEEEEe--------------------------------------------------------------
Q 007411 476 ------------VVIKYI-------------------------------------------------------------- 481 (604)
Q Consensus 476 ------------~~~~~~-------------------------------------------------------------- 481 (604)
+.++.+
T Consensus 417 n~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~ 496 (764)
T KOG1063|consen 417 NEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAA 496 (764)
T ss_pred cCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccC
Confidence 000000
Q ss_pred ------------------------ecCCCCcccEEEEcCCCCEEEEEEcC-----CeEEEEEcCCceeecccccccCccc
Q 007411 482 ------------------------SEPHMHSMPSISLHPNTNWLAAQSLD-----NQILIYSTRERFQLNKKKRFAGHIV 532 (604)
Q Consensus 482 ------------------------~~~~~~~v~~l~~sp~g~~l~s~s~D-----g~I~iwd~~~~~~~~~~~~~~~~~~ 532 (604)
.-+|...|.+++.+|+++++|+++.. ..|++|+..+-... ..+.+|
T Consensus 497 p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~---~~L~~H-- 571 (764)
T KOG1063|consen 497 PCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQV---QELEGH-- 571 (764)
T ss_pred chhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhh---heeccc--
Confidence 01366678999999999999999865 45899988765433 456777
Q ss_pred ccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCe----eEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEe
Q 007411 533 AGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCK----VFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 603 (604)
Q Consensus 533 ~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~----~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vW 603 (604)
+-.|+.++|||||+||++.+.|.++.+|...... ....++.|...|.++.|+| +..+++|+|.|.+|+||
T Consensus 572 sLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~p-de~~FaTaSRDK~VkVW 645 (764)
T KOG1063|consen 572 SLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSP-DEKYFATASRDKKVKVW 645 (764)
T ss_pred ceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCc-ccceeEEecCCceEEEE
Confidence 4669999999999999999999999999874422 2344788999999999999 67789999999999999
No 123
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.1e-21 Score=196.92 Aligned_cols=256 Identities=17% Similarity=0.257 Sum_probs=199.4
Q ss_pred CcEEEEecCCCCeeeEEecCC-CCceeeEEEccCCCEEEEEEC-CCcEEEEECCCCcEEE-EeeCCCcceEEEEccCCCC
Q 007411 336 TKVKIWDVVNSGKCMRTYMGH-SKAVRDISFCNDGTKFLTASY-DKNIKYWDTETGQVIR-TFSTGKIPYVVKLNPDDDK 412 (604)
Q Consensus 336 g~I~IWd~~~~~~~~~~~~~h-~~~V~~l~fspdg~~L~s~s~-Dg~I~vWD~~t~~~i~-~~~~~~~~~~~~~~~~~~~ 412 (604)
..+.+||+ .++....+|++. ...-.++..- .+.+++++.. -..|.+|.+....... .+..+....++...+.
T Consensus 18 ~~~~~~dl-~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~--- 92 (476)
T KOG0646|consen 18 INCIVWDL-RTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNL--- 92 (476)
T ss_pred cceeEEec-CCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecCCC---
Confidence 45999999 688877778765 2222222221 3356776654 4578899987654443 3344455555555554
Q ss_pred CcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECC---------CCeEEEEeec
Q 007411 413 QNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFG---------IPVVIKYISE 483 (604)
Q Consensus 413 ~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~---------~~~~~~~~~~ 483 (604)
+.++++|+-.|.|++|.+.+|.++..+..|-..|+|+.|+.|+.+|++||.||.|.+|.+- +..++..+ .
T Consensus 93 G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f-~ 171 (476)
T KOG0646|consen 93 GYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIF-S 171 (476)
T ss_pred ceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeee-c
Confidence 4788888899999999999999999999999999999999999999999999999999873 23344444 3
Q ss_pred CCCCcccEEEEcCC--CCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEe
Q 007411 484 PHMHSMPSISLHPN--TNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 561 (604)
Q Consensus 484 ~~~~~v~~l~~sp~--g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd 561 (604)
.|.-+|+.+.+.+. ..+|+++|.|.++++||+..+..+.... ....+.+++.+|-++.+++|+.+|.|.+.+
T Consensus 172 ~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~------fp~si~av~lDpae~~~yiGt~~G~I~~~~ 245 (476)
T KOG0646|consen 172 DHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT------FPSSIKAVALDPAERVVYIGTEEGKIFQNL 245 (476)
T ss_pred cCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe------cCCcceeEEEcccccEEEecCCcceEEeee
Confidence 58889999988765 4689999999999999998876553322 245677899999999999999999999987
Q ss_pred CCC----------------CeeEEEEecCCC--cEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007411 562 WKS----------------CKVFRTLKCHEG--VCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 562 ~~t----------------~~~~~~l~~h~~--~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
+.. +..+..+.+|.+ .|++++.+- ++.+|++|+.||.|+|||
T Consensus 246 ~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~-DgtlLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 246 LFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST-DGTLLLSGDEDGKVCVWD 305 (476)
T ss_pred hhcCCcccccccccccccccceeeeeccccCCcceeEEEEec-CccEEEeeCCCCCEEEEe
Confidence 643 234667788988 999999998 788999999999999998
No 124
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=2.3e-22 Score=212.29 Aligned_cols=279 Identities=18% Similarity=0.370 Sum_probs=212.8
Q ss_pred CeEEEEEcCCCCCEEEEEECCCcEEEEecCCCC---eeeEEecC---CCCceeeEEEcc-CCCEEEEEECCCcEEEEECC
Q 007411 315 GVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG---KCMRTYMG---HSKAVRDISFCN-DGTKFLTASYDKNIKYWDTE 387 (604)
Q Consensus 315 ~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~---~~~~~~~~---h~~~V~~l~fsp-dg~~L~s~s~Dg~I~vWD~~ 387 (604)
.+.+|...++ -..|+.++. ..++|+.+.... ++...+.. -.-.+.+|.|+. +.++|++|+..|.|.+||+.
T Consensus 41 ~~nAIs~nr~-~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln 118 (839)
T KOG0269|consen 41 KANAISVNRD-INQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN 118 (839)
T ss_pred ccceEeecCC-cceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence 3455666677 445555553 467777763322 12222111 122456788876 67899999999999999998
Q ss_pred C---CcEEEEeeCC-CcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCC-CCEEEEEe
Q 007411 388 T---GQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS-NRRFVTSS 462 (604)
Q Consensus 388 t---~~~i~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~-~~~l~sgs 462 (604)
. .+.+..|..+ ....++.|+... .++|++|+.||.|++||++..+-..++.+....|..+.|+|. +..|+++.
T Consensus 119 k~~rnk~l~~f~EH~Rs~~~ldfh~te--p~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~ 196 (839)
T KOG0269|consen 119 KSIRNKLLTVFNEHERSANKLDFHSTE--PNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIH 196 (839)
T ss_pred ccccchhhhHhhhhccceeeeeeccCC--ccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEec
Confidence 7 4444555433 345566666654 489999999999999999999999999999999999999985 67899999
Q ss_pred CCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEc
Q 007411 463 DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 542 (604)
Q Consensus 463 ~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s 542 (604)
+.|.|.+||++.+.........|.++|.|+.|+|++.+||+|+.|+.|+||+..+.... ....+. ...++.++.|-
T Consensus 197 dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~-~~~tIn---Tiapv~rVkWR 272 (839)
T KOG0269|consen 197 DSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAK-PKHTIN---TIAPVGRVKWR 272 (839)
T ss_pred CCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCcc-ceeEEe---ecceeeeeeec
Confidence 99999999999887666556689999999999999999999999999999998764322 111111 23568889999
Q ss_pred CCCCEE-EEEc--CCCcEEEEeCCC-CeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEE
Q 007411 543 PDGRFV-MSGD--GEGKCWFWDWKS-CKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIK 601 (604)
Q Consensus 543 pdg~~L-~sgs--~dG~I~iwd~~t-~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~ 601 (604)
|..++. ++++ .|-.|+|||++. --+..++..|...++.++|-..+...|.+|+.||+|.
T Consensus 273 P~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 273 PARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred cCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence 987664 4443 477899999965 4568889999999999999876778999999999864
No 125
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=9.3e-21 Score=181.25 Aligned_cols=254 Identities=20% Similarity=0.389 Sum_probs=194.7
Q ss_pred cCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCC-CC--eeeEEecCCCCceeeEEEcc--CCCEEEEEECCCcEEEE
Q 007411 310 SGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN-SG--KCMRTYMGHSKAVRDISFCN--DGTKFLTASYDKNIKYW 384 (604)
Q Consensus 310 ~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~-~~--~~~~~~~~h~~~V~~l~fsp--dg~~L~s~s~Dg~I~vW 384 (604)
.+|.+-|.|+.|.+. |+.+|+|+.|++|+|||... ++ .+....+.|.+.|..|.|.+ -|+.+++|++|+++.||
T Consensus 10 s~h~DlihdVs~D~~-GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFY-GRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred cCCcceeeeeeeccc-CceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 489999999999999 99999999999999999632 22 56667889999999999976 68999999999999999
Q ss_pred ECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCC--CCEEEEEe
Q 007411 385 DTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS--NRRFVTSS 462 (604)
Q Consensus 385 D~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~--~~~l~sgs 462 (604)
.-. ...+..+. +-| ....++....+.|+.+.|.|. |-.+++++
T Consensus 89 EE~----~~~~~~~~--------------------------~~W-----v~~ttl~DsrssV~DV~FaP~hlGLklA~~~ 133 (361)
T KOG2445|consen 89 EEQ----EKSEEAHG--------------------------RRW-----VRRTTLVDSRSSVTDVKFAPKHLGLKLAAAS 133 (361)
T ss_pred eec----cccccccc--------------------------cee-----EEEEEeecCCcceeEEEecchhcceEEEEec
Confidence 743 11111100 011 123344456778999999985 66899999
Q ss_pred CCCcEEEEECCCCeEEEEee------------cCCCCcccEEEEcCC---CCEEEEEEcC-----CeEEEEEcCCce-ee
Q 007411 463 DDKSLRVWEFGIPVVIKYIS------------EPHMHSMPSISLHPN---TNWLAAQSLD-----NQILIYSTRERF-QL 521 (604)
Q Consensus 463 ~Dg~I~iwdl~~~~~~~~~~------------~~~~~~v~~l~~sp~---g~~l~s~s~D-----g~I~iwd~~~~~-~~ 521 (604)
.||.||||+.-.+..+.... ..+..+..|+.|+|. ..+|++|+.+ +.+.||...... ..
T Consensus 134 aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw 213 (361)
T KOG2445|consen 134 ADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKW 213 (361)
T ss_pred cCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCccee
Confidence 99999999986654433321 124456778999875 4678888766 578999865543 55
Q ss_pred cccccccCcccccceEEEEEcCC----CCEEEEEcCCCcEEEEeCCC--------------------CeeEEEEecCCCc
Q 007411 522 NKKKRFAGHIVAGYACQVNFSPD----GRFVMSGDGEGKCWFWDWKS--------------------CKVFRTLKCHEGV 577 (604)
Q Consensus 522 ~~~~~~~~~~~~~~v~~l~~spd----g~~L~sgs~dG~I~iwd~~t--------------------~~~~~~l~~h~~~ 577 (604)
.....+.+| ..+|..++|.|+ -.+||+++.|| |+||.+.. -+.+..+..|.+.
T Consensus 214 ~kva~L~d~--~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~ 290 (361)
T KOG2445|consen 214 LKVAELPDH--TDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGE 290 (361)
T ss_pred eeehhcCCC--CCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCc
Confidence 555666666 678999999995 35789999999 99999873 1245667789999
Q ss_pred EEEEEEecCCCCEEEEEeCCCcEEEe
Q 007411 578 CIGCEWHPLEQSKVATCGWDGLIKYW 603 (604)
Q Consensus 578 V~~v~~sp~~~~~l~tgg~DG~I~vW 603 (604)
|..+.|+- .+..|++.|.||+||+|
T Consensus 291 VWrv~wNm-tGtiLsStGdDG~VRLW 315 (361)
T KOG2445|consen 291 VWRVRWNM-TGTILSSTGDDGCVRLW 315 (361)
T ss_pred eEEEEEee-eeeEEeecCCCceeeeh
Confidence 99999998 78899999999999999
No 126
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=6.8e-20 Score=191.42 Aligned_cols=277 Identities=13% Similarity=0.216 Sum_probs=223.6
Q ss_pred CCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCC-CCceeeEEEccCCCEEEEEECCCcEEEEECCCCc
Q 007411 312 HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGH-SKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ 390 (604)
Q Consensus 312 H~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h-~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~ 390 (604)
-..+|+|++|+.+ .+.||.+-.+|.|-||++.+..-+...+.++ ...|.+++|+ ++.+|++.+.+|.|.-||+.+++
T Consensus 24 ~Ps~I~slA~s~k-S~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk 101 (691)
T KOG2048|consen 24 KPSEIVSLAYSHK-SNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLK 101 (691)
T ss_pred eccceEEEEEecc-CCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCc
Confidence 3467999999999 7789999999999999997766667777766 4579999999 55678899999999999999999
Q ss_pred EEEEeeC-CCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEE--EEcCcCCceeEEEEeCCCCEEEEEeCCCcE
Q 007411 391 VIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQ--EYDQHLGAVNTITFVDSNRRFVTSSDDKSL 467 (604)
Q Consensus 391 ~i~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~--~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I 467 (604)
.+..+.. +...+.++.++.. ..+++|+.||.++.++...+++.. .+....+.|.+++|+|++..+++|+.||.|
T Consensus 102 ~~~~~d~~gg~IWsiai~p~~---~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~I 178 (691)
T KOG2048|consen 102 QKYNIDSNGGAIWSIAINPEN---TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVI 178 (691)
T ss_pred eeEEecCCCcceeEEEeCCcc---ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceE
Confidence 9888764 5677888988866 579999999988888888776544 345567899999999999999999999999
Q ss_pred EEEECCCCeEEEEeec-------CCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEE
Q 007411 468 RVWEFGIPVVIKYISE-------PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVN 540 (604)
Q Consensus 468 ~iwdl~~~~~~~~~~~-------~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~ 540 (604)
++||...+.....+.. ....-|.++.+- ....|++|...|.|.+||...+..+.....+ ...|.+++
T Consensus 179 riwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L-rd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h-----~adVl~La 252 (691)
T KOG2048|consen 179 RIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL-RDSTIASGDSAGTVTFWDSIFGTLIQSHSCH-----DADVLALA 252 (691)
T ss_pred EEEEcCCCceEEEeeecccccccCCceEEEEEEEe-ecCcEEEecCCceEEEEcccCcchhhhhhhh-----hcceeEEE
Confidence 9999998877663221 122235666666 4457999999999999999888766544443 34577899
Q ss_pred EcCCCCEEEEEcCCCcEEEEeCCCCee----EEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEE
Q 007411 541 FSPDGRFVMSGDGEGKCWFWDWKSCKV----FRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKY 602 (604)
Q Consensus 541 ~spdg~~L~sgs~dG~I~iwd~~t~~~----~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~v 602 (604)
..+++.++++++.|+.|..+...+.+. ......|...|.+++..+ ..|++||.|+.+.+
T Consensus 253 v~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~---~~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 253 VADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIE---NALISGGRDFTLAI 315 (691)
T ss_pred EcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeec---ceEEecceeeEEEE
Confidence 999999999999999999998776543 223346888899999987 28999999998765
No 127
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.87 E-value=3.4e-20 Score=187.34 Aligned_cols=290 Identities=17% Similarity=0.266 Sum_probs=225.9
Q ss_pred eeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCC-C-------------------------------------
Q 007411 305 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN-S------------------------------------- 346 (604)
Q Consensus 305 ~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~-~------------------------------------- 346 (604)
..+....|.++|.+++...+ |.+| ||+.|..|..||-.- .
T Consensus 279 ~~k~~~aH~ggv~~L~~lr~-Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~ 356 (626)
T KOG2106|consen 279 ISKQVHAHDGGVFSLCMLRD-GTLL-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTL 356 (626)
T ss_pred EEeEeeecCCceEEEEEecC-ccEe-ecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeee
Confidence 34444499999999999988 6555 599999999998410 0
Q ss_pred -CeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeE
Q 007411 347 -GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKI 425 (604)
Q Consensus 347 -~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I 425 (604)
.....+..+|......++.+|+.++|++|+.|+.+++|+ ..+++.+........+..|+|.+ .+++|...|..
T Consensus 357 ~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg----~va~Gt~~G~w 430 (626)
T KOG2106|consen 357 ENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG----VVAVGTATGRW 430 (626)
T ss_pred cCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc----eEEEeeccceE
Confidence 001112347888899999999999999999999999999 77888888888888999999865 69999999999
Q ss_pred EEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCC-eEEEEeecCCCCcccEEEEcCCCCEEEEE
Q 007411 426 VQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP-VVIKYISEPHMHSMPSISLHPNTNWLAAQ 504 (604)
Q Consensus 426 ~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~-~~~~~~~~~~~~~v~~l~~sp~g~~l~s~ 504 (604)
.+.|+.+...+..-.. ..+++++.|+|+|.+|+.|+.|+.|+||-+... .........+..+|+.+.|++|+++|.+.
T Consensus 431 ~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~ 509 (626)
T KOG2106|consen 431 FVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSN 509 (626)
T ss_pred EEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEec
Confidence 9999999776666555 899999999999999999999999999998654 33444433455889999999999999999
Q ss_pred EcCCeEEEEEcCCceeeccccccc-------------CcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCC---eeE
Q 007411 505 SLDNQILIYSTRERFQLNKKKRFA-------------GHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC---KVF 568 (604)
Q Consensus 505 s~Dg~I~iwd~~~~~~~~~~~~~~-------------~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~---~~~ 568 (604)
+.|-.|..|...........+... +......+..++-+.+.+++++|+..|+|++|...-. ...
T Consensus 510 S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~ 589 (626)
T KOG2106|consen 510 SGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPS 589 (626)
T ss_pred cCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccc
Confidence 999999999543222211111100 0111222334555677889999999999999987543 346
Q ss_pred EEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007411 569 RTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 569 ~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
..+.+|++.|.+++|.- +.+.|++.+.|..|..|+
T Consensus 590 he~~ghs~~vt~V~Fl~-~d~~li~tg~D~Si~qW~ 624 (626)
T KOG2106|consen 590 HEYGGHSSHVTNVAFLC-KDSHLISTGKDTSIMQWR 624 (626)
T ss_pred eeeccccceeEEEEEee-CCceEEecCCCceEEEEE
Confidence 67789999999999998 566788888999999995
No 128
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=3.9e-22 Score=210.52 Aligned_cols=245 Identities=16% Similarity=0.327 Sum_probs=197.0
Q ss_pred CeEEEEEcCCCCCEEEEEECCCcEEEEecCC--CCeeeEEecCCCCceeeEEEcc-CCCEEEEEECCCcEEEEECCCCcE
Q 007411 315 GVSAIRFFPKYGHLILSAGMDTKVKIWDVVN--SGKCMRTYMGHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTETGQV 391 (604)
Q Consensus 315 ~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~--~~~~~~~~~~h~~~V~~l~fsp-dg~~L~s~s~Dg~I~vWD~~t~~~ 391 (604)
.+..|.|.....++||+++..|.|.+||+.. ..+.+..|..|...|+++.|++ ...+|++||.||+|++||++..+.
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 3566788876688999999999999999954 2466678889999999999998 567899999999999999998887
Q ss_pred EEEeeC-CCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCC-ceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEE
Q 007411 392 IRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRV 469 (604)
Q Consensus 392 i~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~-~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~i 469 (604)
..++.. ...+.-+.|+|.. ++.|+++...|.+++||+|.. ++...+..|.++|.|+.|+|++.+|+||+.|+.|+|
T Consensus 169 ~~t~~~nSESiRDV~fsp~~--~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vki 246 (839)
T KOG0269|consen 169 KSTFRSNSESIRDVKFSPGY--GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKI 246 (839)
T ss_pred cccccccchhhhceeeccCC--CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEE
Confidence 776654 4556778888866 488999999999999999875 456678899999999999999999999999999999
Q ss_pred EECCCCeEEEEeecCCCCcccEEEEcCCCC-EEEEEE--cCCeEEEEEcCCceeecccccccCcccccceEEEEEcC-CC
Q 007411 470 WEFGIPVVIKYISEPHMHSMPSISLHPNTN-WLAAQS--LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP-DG 545 (604)
Q Consensus 470 wdl~~~~~~~~~~~~~~~~v~~l~~sp~g~-~l~s~s--~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg 545 (604)
||+...............++.++.|-|... .|++++ .|..|+|||++..... ...+..| ...++.++|.. |-
T Consensus 247 Wd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP--~~t~~eH--~~~vt~i~W~~~d~ 322 (839)
T KOG0269|consen 247 WDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIP--YATFLEH--TDSVTGIAWDSGDR 322 (839)
T ss_pred EeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecccccc--ceeeecc--CccccceeccCCCc
Confidence 999865543333334667899999999765 466655 4678999999865433 4556666 45677788865 55
Q ss_pred CEEEEEcCCCcEEEEeCCCC
Q 007411 546 RFVMSGDGEGKCWFWDWKSC 565 (604)
Q Consensus 546 ~~L~sgs~dG~I~iwd~~t~ 565 (604)
..|.+++.||.|..-.++++
T Consensus 323 ~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 323 INLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred eeeEeecCccHHHHhhhhcc
Confidence 67889999998876655543
No 129
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=4.1e-21 Score=178.28 Aligned_cols=245 Identities=18% Similarity=0.290 Sum_probs=193.9
Q ss_pred cCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCc---EEEEeeCCCcc-eEEEEccCCCCCcEEEEEEcCCeEEEEe
Q 007411 354 MGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ---VIRTFSTGKIP-YVVKLNPDDDKQNILLAGMSDKKIVQWD 429 (604)
Q Consensus 354 ~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~---~i~~~~~~~~~-~~~~~~~~~~~~~~lvsg~~dg~I~iwD 429 (604)
..|...|.++...--|.+|+||+.|++|+|+.++.+. .+..+..+..+ .-+.|. .+.-+.+|++++.||+|.||.
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wa-hPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWA-HPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeec-ccccCcEeeEeecCceEEEEe
Confidence 4689999999888889999999999999999998654 45555554443 334443 334568999999999999999
Q ss_pred CCCCc--eEEEEcCcCCceeEEEEeCC--CCEEEEEeCCCcEEEEECCCC--eEEEEeecCCCCcccEEEEcCC---C--
Q 007411 430 MNTKE--ITQEYDQHLGAVNTITFVDS--NRRFVTSSDDKSLRVWEFGIP--VVIKYISEPHMHSMPSISLHPN---T-- 498 (604)
Q Consensus 430 ~~s~~--~~~~~~~h~~~V~~i~~sp~--~~~l~sgs~Dg~I~iwdl~~~--~~~~~~~~~~~~~v~~l~~sp~---g-- 498 (604)
-..++ ....+..|...|++++|.|. |-.|++++.||.|.|.+++.. -....+...|.-.+++++|.|. |
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~ 166 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL 166 (299)
T ss_pred cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence 88874 34456679999999999986 567999999999999998764 3445566678999999999985 4
Q ss_pred ---------CEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCC----CEEEEEcCCCcEEEEeCCCC
Q 007411 499 ---------NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDG----RFVMSGDGEGKCWFWDWKSC 565 (604)
Q Consensus 499 ---------~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg----~~L~sgs~dG~I~iwd~~t~ 565 (604)
+.|++|+.|+.|+||+..+. .......+.+| ...|..++|.|.- .+|++++.||+|.||-....
T Consensus 167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~-~w~~e~~l~~H--~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e 243 (299)
T KOG1332|consen 167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSD-SWKLERTLEGH--KDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEE 243 (299)
T ss_pred cccCcccccceeeccCCccceeeeecCCc-chhhhhhhhhc--chhhhhhhhccccCCCceeeEEecCCCcEEEEEecCc
Confidence 56999999999999998876 23333447777 6889999999963 57999999999999976521
Q ss_pred -e--eEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEe
Q 007411 566 -K--VFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 603 (604)
Q Consensus 566 -~--~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vW 603 (604)
+ ....+......+..+.|+. .+++|+.++.|..|.+|
T Consensus 244 ~e~wk~tll~~f~~~~w~vSWS~-sGn~LaVs~GdNkvtlw 283 (299)
T KOG1332|consen 244 YEPWKKTLLEEFPDVVWRVSWSL-SGNILAVSGGDNKVTLW 283 (299)
T ss_pred cCcccccccccCCcceEEEEEec-cccEEEEecCCcEEEEE
Confidence 1 1222334567899999999 78899999999999999
No 130
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=2e-20 Score=201.22 Aligned_cols=243 Identities=17% Similarity=0.304 Sum_probs=201.4
Q ss_pred CCCCceeeEEEccCCCEEEEEECCCcEEEEECCCC-cEEEEee-CCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCC
Q 007411 355 GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG-QVIRTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT 432 (604)
Q Consensus 355 ~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~-~~i~~~~-~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s 432 (604)
.|....+.|+|.|+|.+|++|+.||.|++|+.... .....+. .+..+.+++... +.|++|+.++.|.+|.+.+
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s-----~~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYS-----NHFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecc-----cceEEeeccceEEEeeCCC
Confidence 68888999999999999999999999999998765 3333333 333333333332 4799999999999999998
Q ss_pred CceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEE
Q 007411 433 KEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILI 512 (604)
Q Consensus 433 ~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~i 512 (604)
++.-..+....-++++++++.+|.+++.||+|-.|++-++......+.+. +|..+|.++.++|++++||+.+.||.|+|
T Consensus 86 ~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr-gh~apVl~l~~~p~~~fLAvss~dG~v~i 164 (933)
T KOG1274|consen 86 GEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR-GHDAPVLQLSYDPKGNFLAVSSCDGKVQI 164 (933)
T ss_pred CCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeec-ccCCceeeeeEcCCCCEEEEEecCceEEE
Confidence 87666666677899999999999999999999999999998877766664 69999999999999999999999999999
Q ss_pred EEcCCceeeccccccc---CcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEec--CCCcEEEEEEecCC
Q 007411 513 YSTRERFQLNKKKRFA---GHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC--HEGVCIGCEWHPLE 587 (604)
Q Consensus 513 wd~~~~~~~~~~~~~~---~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~--h~~~V~~v~~sp~~ 587 (604)
|++.++.......... .......++.++|+|+|..++....|+.|.+|+..++.....+.. +...+..+.|+| .
T Consensus 165 w~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsP-n 243 (933)
T KOG1274|consen 165 WDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSP-N 243 (933)
T ss_pred EEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcC-C
Confidence 9998875544333221 122245678899999988888889999999999999999888863 445599999999 7
Q ss_pred CCEEEEEeCCCcEEEeC
Q 007411 588 QSKVATCGWDGLIKYWD 604 (604)
Q Consensus 588 ~~~l~tgg~DG~I~vWD 604 (604)
+.+||+++.||.|.|||
T Consensus 244 G~YiAAs~~~g~I~vWn 260 (933)
T KOG1274|consen 244 GKYIAASTLDGQILVWN 260 (933)
T ss_pred CcEEeeeccCCcEEEEe
Confidence 89999999999999997
No 131
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.87 E-value=9.8e-21 Score=197.94 Aligned_cols=240 Identities=19% Similarity=0.314 Sum_probs=197.6
Q ss_pred CeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEE--eeCCCcc--eEEEEccCCCCCcEEEEEEcC
Q 007411 347 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRT--FSTGKIP--YVVKLNPDDDKQNILLAGMSD 422 (604)
Q Consensus 347 ~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~--~~~~~~~--~~~~~~~~~~~~~~lvsg~~d 422 (604)
.+..+.+.+|...|+.+++.+. ..++++|.||++++|+-...+.+.. +..+... ..+++.. ...-.+++|+.|
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e--~~~~~l~~g~~D 80 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAE--SDKGRLVVGGMD 80 (745)
T ss_pred ceeEEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceecc--ccCcceEeeccc
Confidence 4566788999999999998754 4899999999999999876665542 2222222 1244444 233569999999
Q ss_pred CeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEE
Q 007411 423 KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLA 502 (604)
Q Consensus 423 g~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~ 502 (604)
..|.+|.+.+..+...+.+|.+.|.|+....++. +++||.|.++++|-....... ..+|..+|.++..-|.+ .++
T Consensus 81 ~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~~---l~gH~asVWAv~~l~e~-~~v 155 (745)
T KOG0301|consen 81 TTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELVYS---LQGHTASVWAVASLPEN-TYV 155 (745)
T ss_pred ceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchhhhcc---cCCcchheeeeeecCCC-cEE
Confidence 9999999999999999999999999999887776 999999999999986543322 45899999999999988 889
Q ss_pred EEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEE
Q 007411 503 AQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCE 582 (604)
Q Consensus 503 s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~ 582 (604)
+||.|.+|++|.-.. ..+.+.+| ...|..+++-+++ .+++++.||.|++|++ +|+++.++.+|..-|.++.
T Consensus 156 TgsaDKtIklWk~~~-----~l~tf~gH--tD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis 226 (745)
T KOG0301|consen 156 TGSADKTIKLWKGGT-----LLKTFSGH--TDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSIS 226 (745)
T ss_pred eccCcceeeeccCCc-----hhhhhccc--hhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEE
Confidence 999999999997532 24678888 5788899998876 4568889999999998 8999999999999999999
Q ss_pred EecCCCCEEEEEeCCCcEEEeC
Q 007411 583 WHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 583 ~sp~~~~~l~tgg~DG~I~vWD 604 (604)
..+ +...++|||.|++++||+
T Consensus 227 ~~~-~~~~Ivs~gEDrtlriW~ 247 (745)
T KOG0301|consen 227 MAL-SDGLIVSTGEDRTLRIWK 247 (745)
T ss_pred ecC-CCCeEEEecCCceEEEee
Confidence 666 667999999999999995
No 132
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.87 E-value=5e-21 Score=191.98 Aligned_cols=212 Identities=23% Similarity=0.407 Sum_probs=174.8
Q ss_pred ceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCe------eeEEecCCCCceeeEEEcc-CCCEEEEEE
Q 007411 304 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGK------CMRTYMGHSKAVRDISFCN-DGTKFLTAS 376 (604)
Q Consensus 304 ~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~------~~~~~~~h~~~V~~l~fsp-dg~~L~s~s 376 (604)
++-.+|.||.+.=++|+|++...-.|++|+.|++|++||+..... +...+.+|...|.+++|++ +..+|++++
T Consensus 168 ~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~ 247 (422)
T KOG0264|consen 168 RPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVG 247 (422)
T ss_pred CCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeec
Confidence 455688999998899999998788999999999999999953332 4567889999999999999 667899999
Q ss_pred CCCcEEEEECCC--CcEEEEeeC-CCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCC-ceEEEEcCcCCceeEEEEe
Q 007411 377 YDKNIKYWDTET--GQVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITFV 452 (604)
Q Consensus 377 ~Dg~I~vWD~~t--~~~i~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~-~~~~~~~~h~~~V~~i~~s 452 (604)
.|+.+.|||+++ .++...... .....|+.|+|.+ ..+|++|+.|++|.+||+|+. ..+..+.+|...|.++.|+
T Consensus 248 dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~--~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WS 325 (422)
T KOG0264|consen 248 DDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFN--EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWS 325 (422)
T ss_pred CCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCC--CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeC
Confidence 999999999995 333333333 4456788888866 489999999999999999986 5788899999999999999
Q ss_pred CCC-CEEEEEeCCCcEEEEECCCCe-------------EEEEeecCCCCcccEEEEcCCCCE-EEEEEcCCeEEEEEcCC
Q 007411 453 DSN-RRFVTSSDDKSLRVWEFGIPV-------------VIKYISEPHMHSMPSISLHPNTNW-LAAQSLDNQILIYSTRE 517 (604)
Q Consensus 453 p~~-~~l~sgs~Dg~I~iwdl~~~~-------------~~~~~~~~~~~~v~~l~~sp~g~~-l~s~s~Dg~I~iwd~~~ 517 (604)
|.. ..|++++.|+.+.|||+..-. .+..+..+|...|..+.|+|+..+ |++.+.|+.+.||.+..
T Consensus 326 Ph~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 326 PHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred CCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 975 578889999999999985321 223455689999999999999875 56678899999998763
No 133
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.87 E-value=2e-19 Score=181.88 Aligned_cols=286 Identities=16% Similarity=0.294 Sum_probs=216.8
Q ss_pred cCcceeEEecCCCCCeEEEEEcCCCC-CEEEEE--ECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEEC
Q 007411 301 IPKRLVHTWSGHTKGVSAIRFFPKYG-HLILSA--GMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASY 377 (604)
Q Consensus 301 ~p~~~i~tl~gH~~~V~~l~fsp~~g-~~L~sg--s~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~ 377 (604)
+.-..++.+-....+|+|++|++.++ .+|+.- +.+..+.+||. ..+.........+..|....|+|.+..|+....
T Consensus 142 v~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdW-qk~~~~~~vk~sne~v~~a~FHPtd~nliit~G 220 (626)
T KOG2106|consen 142 VTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDW-QKKAKLGPVKTSNEVVFLATFHPTDPNLIITCG 220 (626)
T ss_pred ccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhc-hhhhccCcceeccceEEEEEeccCCCcEEEEeC
Confidence 34456677777888999999998644 444443 44567889999 455555555566788999999995554544444
Q ss_pred CCcEEEEECCCCcEEEEe---eCC--CcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEe
Q 007411 378 DKNIKYWDTETGQVIRTF---STG--KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFV 452 (604)
Q Consensus 378 Dg~I~vWD~~t~~~i~~~---~~~--~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~s 452 (604)
.+.+.+|+.+.+....+. ... +...+++|.++++ +++|.++|.|.||+..+.+..+....|.+.|.+++..
T Consensus 221 k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd----viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~l 296 (626)
T KOG2106|consen 221 KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD----VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCML 296 (626)
T ss_pred CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC----EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEe
Confidence 689999999988766543 222 4455666766655 9999999999999999988888777999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCe-----------EEEE----------------------------eecCCCCcccEEE
Q 007411 453 DSNRRFVTSSDDKSLRVWEFGIPV-----------VIKY----------------------------ISEPHMHSMPSIS 493 (604)
Q Consensus 453 p~~~~l~sgs~Dg~I~iwdl~~~~-----------~~~~----------------------------~~~~~~~~v~~l~ 493 (604)
.+|. |++|+.|..|..||-.-.+ .++. ....|......++
T Consensus 297 r~Gt-llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla 375 (626)
T KOG2106|consen 297 RDGT-LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLA 375 (626)
T ss_pred cCcc-EeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEE
Confidence 9885 5559999999999932100 0111 1124666788899
Q ss_pred EcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEec
Q 007411 494 LHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC 573 (604)
Q Consensus 494 ~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~ 573 (604)
.+|+...+++++.|+.+++|+ .. +.... +. ...++.++.|+|.| .|+.|...|...+.|..+..++..-..
T Consensus 376 ~hps~~q~~T~gqdk~v~lW~-~~-k~~wt-~~-----~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d 446 (626)
T KOG2106|consen 376 THPSKNQLLTCGQDKHVRLWN-DH-KLEWT-KI-----IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD 446 (626)
T ss_pred cCCChhheeeccCcceEEEcc-CC-ceeEE-EE-----ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec
Confidence 999999999999999999998 22 22211 11 13456689999999 999999999999999999665554444
Q ss_pred CCCcEEEEEEecCCCCEEEEEeCCCcEEEe
Q 007411 574 HEGVCIGCEWHPLEQSKVATCGWDGLIKYW 603 (604)
Q Consensus 574 h~~~V~~v~~sp~~~~~l~tgg~DG~I~vW 603 (604)
..+++.+.|+| ++.+||.|+.|+.|.||
T Consensus 447 -~~~ls~v~ysp-~G~~lAvgs~d~~iyiy 474 (626)
T KOG2106|consen 447 -NEQLSVVRYSP-DGAFLAVGSHDNHIYIY 474 (626)
T ss_pred -CCceEEEEEcC-CCCEEEEecCCCeEEEE
Confidence 78999999999 78899999999999987
No 134
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.8e-20 Score=187.76 Aligned_cols=285 Identities=16% Similarity=0.257 Sum_probs=226.7
Q ss_pred CCCCCccccCcceeeccCccccccceeecCCCccccCCCCcccCcceeEEecCCCCCeEEEEEcCCCCC-EEEEEECCCc
Q 007411 259 GGEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGH-LILSAGMDTK 337 (604)
Q Consensus 259 ~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~fsp~~g~-~L~sgs~Dg~ 337 (604)
+++....++++.++....+.|...|.|....+- ...++.+.--..+|.+++|.|+ |+ .+++++....
T Consensus 214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~-----------N~~lqS~~l~~fPi~~a~f~p~-G~~~i~~s~rrky 281 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKV-----------NPKLQSIHLEKFPIQKAEFAPN-GHSVIFTSGRRKY 281 (514)
T ss_pred CCceEEEecCCCceEEEecCCCcEEEEEecCcc-----------ChhheeeeeccCccceeeecCC-CceEEEecccceE
Confidence 344556688888888888999999988776542 2356777777889999999999 55 9999999999
Q ss_pred EEEEecCCCCeee--EEecCCC-CceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCc
Q 007411 338 VKIWDVVNSGKCM--RTYMGHS-KAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQN 414 (604)
Q Consensus 338 I~IWd~~~~~~~~--~~~~~h~-~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~ 414 (604)
++.||+ .+.+.. ....++. ..+.....++++++|+..+..|.|.|....+++.+.+++.......++|..++ .
T Consensus 282 ~ysyDl-e~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSds---k 357 (514)
T KOG2055|consen 282 LYSYDL-ETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDS---K 357 (514)
T ss_pred EEEeec-cccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCC---c
Confidence 999999 444332 2333443 46778889999999999999999999999999999999998888888888544 6
Q ss_pred EEEEEEcCCeEEEEeCCCCceEEEEcCcCCce--eEEEEeCCCCEEEEEeCCCcEEEEECCC------CeEEEEeecCCC
Q 007411 415 ILLAGMSDKKIVQWDMNTKEITQEYDQHLGAV--NTITFVDSNRRFVTSSDDKSLRVWEFGI------PVVIKYISEPHM 486 (604)
Q Consensus 415 ~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V--~~i~~sp~~~~l~sgs~Dg~I~iwdl~~------~~~~~~~~~~~~ 486 (604)
.|++.+.+|.|++||++...+++.+.. .+.| ++++.++++.+|++||..|.|.|||..+ +++++.+.. ..
T Consensus 358 ~l~~~~~~GeV~v~nl~~~~~~~rf~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dN-Lt 435 (514)
T KOG2055|consen 358 ELLASGGTGEVYVWNLRQNSCLHRFVD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDN-LT 435 (514)
T ss_pred EEEEEcCCceEEEEecCCcceEEEEee-cCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhh-hh
Confidence 788888899999999999988888853 3333 5677779999999999999999999753 455655543 56
Q ss_pred CcccEEEEcCCCCEEEEEEc--CCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCC
Q 007411 487 HSMPSISLHPNTNWLAAQSL--DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 563 (604)
Q Consensus 487 ~~v~~l~~sp~g~~l~s~s~--Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~ 563 (604)
..|+++.|+|++.+||.+|. .+.+++-.+.+............. -+.++|++|||.|.+|+.|...|+|.+|.+.
T Consensus 436 t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~--vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 436 TAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTK--VGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCc--ccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 68999999999999988874 577888877664443333333222 4679999999999999999999999999864
No 135
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.86 E-value=3.6e-20 Score=193.46 Aligned_cols=284 Identities=19% Similarity=0.222 Sum_probs=220.2
Q ss_pred eEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeee--EEecCCCCceeeEEEccC-----------CCEEEEEECCCcEE
Q 007411 316 VSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCM--RTYMGHSKAVRDISFCND-----------GTKFLTASYDKNIK 382 (604)
Q Consensus 316 V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~--~~~~~h~~~V~~l~fspd-----------g~~L~s~s~Dg~I~ 382 (604)
..++.|.+. ...|.....|..++|||+..-.+.- ..+..|+..|+++.--|- ...|++|+.|++|+
T Consensus 327 ~IA~~Fdet-~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIR 405 (1080)
T KOG1408|consen 327 AIACQFDET-TDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIR 405 (1080)
T ss_pred eeEEEecCC-CceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEE
Confidence 456779888 7888888999999999995443332 234468888888876551 23699999999999
Q ss_pred EEECCCC---cEEEE-----------------------------------eeCCCcceEEEEccCCCCCcEEEEEEcCCe
Q 007411 383 YWDTETG---QVIRT-----------------------------------FSTGKIPYVVKLNPDDDKQNILLAGMSDKK 424 (604)
Q Consensus 383 vWD~~t~---~~i~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~ 424 (604)
+||+..+ +..++ +.......+++++|++ ..|++|..-|.
T Consensus 406 lW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~g---qhLAsGDr~Gn 482 (1080)
T KOG1408|consen 406 LWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDG---QHLASGDRGGN 482 (1080)
T ss_pred EeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCc---ceecccCccCc
Confidence 9999752 11111 0011223567777755 67999999999
Q ss_pred EEEEeCCCCceEEEEcCcCCceeEEEEeCC---CCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCC--C
Q 007411 425 IVQWDMNTKEITQEYDQHLGAVNTITFVDS---NRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNT--N 499 (604)
Q Consensus 425 I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~---~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g--~ 499 (604)
|++|++...+....+..|...|.|+.++.. .++|++++.|..|.|||....-.+......|...|+++.|.-+| .
T Consensus 483 lrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~ 562 (1080)
T KOG1408|consen 483 LRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNR 562 (1080)
T ss_pred eEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCce
Confidence 999999999999999999999999999842 56899999999999999987776666667899999999998877 6
Q ss_pred EEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEec---CCC
Q 007411 500 WLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC---HEG 576 (604)
Q Consensus 500 ~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~---h~~ 576 (604)
.+++++.|..|.+-..+...................+..++..|..+++++++.|..|+||++.+++..+.|++ |.+
T Consensus 563 ~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG 642 (1080)
T KOG1408|consen 563 KMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEG 642 (1080)
T ss_pred EEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCC
Confidence 78899999887653332111111111111122245677899999999999999999999999999999999985 667
Q ss_pred cEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007411 577 VCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 577 ~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
....+...| .+-+|+|...|.+|.++|
T Consensus 643 ~lIKv~lDP-SgiY~atScsdktl~~~D 669 (1080)
T KOG1408|consen 643 DLIKVILDP-SGIYLATSCSDKTLCFVD 669 (1080)
T ss_pred ceEEEEECC-CccEEEEeecCCceEEEE
Confidence 888999999 888999999999999987
No 136
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.86 E-value=4.8e-20 Score=192.73 Aligned_cols=293 Identities=18% Similarity=0.312 Sum_probs=216.8
Q ss_pred ceeEEecCCCCCeEEEEEcCCCCC---EEEEEECCCcEEEEecCC-CCeeeEEecCCCCceeeEEEccCCCEEEEEECCC
Q 007411 304 RLVHTWSGHTKGVSAIRFFPKYGH---LILSAGMDTKVKIWDVVN-SGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDK 379 (604)
Q Consensus 304 ~~i~tl~gH~~~V~~l~fsp~~g~---~L~sgs~Dg~I~IWd~~~-~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg 379 (604)
..+.++.||.+.|+|+.|-|. .. .+++|+.|+.|++|.+.. .-.++.++.+|...+.|+ +.......+.+.|+
T Consensus 45 ~i~t~l~GH~a~VnC~~~l~~-s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv--~a~~~~~~~~~ad~ 121 (764)
T KOG1063|consen 45 LIVTTLDGHVARVNCVHWLPT-SEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCV--VARSSVMTCKAADG 121 (764)
T ss_pred eeEEeccCCccceEEEEEccc-ccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEE--EeeeeEEEeeccCc
Confidence 356788999999999999998 55 799999999999999952 235667777766655554 43322333337899
Q ss_pred cEEEEECCCCc--EEEEee--CC-CcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCC--ceEEEEcCcCCceeEEEEe
Q 007411 380 NIKYWDTETGQ--VIRTFS--TG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK--EITQEYDQHLGAVNTITFV 452 (604)
Q Consensus 380 ~I~vWD~~t~~--~i~~~~--~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~--~~~~~~~~h~~~V~~i~~s 452 (604)
.+.+||.+..+ +...+. .+ -.+.|+.+.+ ..+..+++.|+.+..|.++.-.+. ..+..+.+|...|.+++|.
T Consensus 122 ~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~-~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~ 200 (764)
T KOG1063|consen 122 TVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALK-NNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFA 200 (764)
T ss_pred eEEEeecCCCceeeehheehhhhhHhhHHHhhhc-cCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhh
Confidence 99999996555 222222 22 2344666666 345567778888888888876543 5677889999999999998
Q ss_pred CCCC---EEEEEeCCCcEEEEECCCCe------------------------EEE------EeecCCCCcccEEEEcCCCC
Q 007411 453 DSNR---RFVTSSDDKSLRVWEFGIPV------------------------VIK------YISEPHMHSMPSISLHPNTN 499 (604)
Q Consensus 453 p~~~---~l~sgs~Dg~I~iwdl~~~~------------------------~~~------~~~~~~~~~v~~l~~sp~g~ 499 (604)
..+. +|+++|.|..||||.+.... .+. .+..+|..-|.++-|+|.+.
T Consensus 201 ~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~ 280 (764)
T KOG1063|consen 201 RLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGL 280 (764)
T ss_pred ccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchh
Confidence 6544 78999999999999874322 011 12246888899999999999
Q ss_pred EEEEEEcCCeEEEEEcCCceee----cccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC---CeeEEEEe
Q 007411 500 WLAAQSLDNQILIYSTRERFQL----NKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS---CKVFRTLK 572 (604)
Q Consensus 500 ~l~s~s~Dg~I~iwd~~~~~~~----~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t---~~~~~~l~ 572 (604)
.|++++.|.++.+|......-+ .+.....+. ++.....-|+|+++.+++-+..|..++|..+. ......+.
T Consensus 281 ~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~--a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iS 358 (764)
T KOG1063|consen 281 DLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGS--AGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVIS 358 (764)
T ss_pred hheecccCcceEEEecCCccceEEEEEEeeccccc--ccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccc
Confidence 9999999999999987654211 112222222 34456788999999999999999999998332 23455667
Q ss_pred cCCCcEEEEEEecCCCCEEEEEeCCCcEEEe
Q 007411 573 CHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 603 (604)
Q Consensus 573 ~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vW 603 (604)
+|.+.|.+++|+| .+.+|+|.|.|.+-|++
T Consensus 359 GH~~~V~dv~W~p-sGeflLsvs~DQTTRlF 388 (764)
T KOG1063|consen 359 GHVDGVKDVDWDP-SGEFLLSVSLDQTTRLF 388 (764)
T ss_pred cccccceeeeecC-CCCEEEEeccccceeee
Confidence 9999999999999 78899999999998875
No 137
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=1.3e-21 Score=205.14 Aligned_cols=237 Identities=20% Similarity=0.435 Sum_probs=204.9
Q ss_pred EecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECC
Q 007411 308 TWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE 387 (604)
Q Consensus 308 tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~ 387 (604)
.+..|...|.|+..-.. ++.+++|+.|..+-+|.+ ....++..|.+|..+|.+|.|+++..+|+.|+.+|+|++||++
T Consensus 23 ~~~~hsaav~~lk~~~s-~r~~~~Gg~~~k~~L~~i-~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDle 100 (825)
T KOG0267|consen 23 EFVAHSAAVGCLKIRKS-SRSLVTGGEDEKVNLWAI-GKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLE 100 (825)
T ss_pred hhhhhhhhhceeeeecc-ceeeccCCCceeeccccc-cCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehh
Confidence 34578999999998444 899999999999999999 4556666799999999999999999999999999999999999
Q ss_pred CCcEEEEeeCCCc-ceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCc
Q 007411 388 TGQVIRTFSTGKI-PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKS 466 (604)
Q Consensus 388 t~~~i~~~~~~~~-~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~ 466 (604)
.++.++++.++.. +..+.|+|.. .+++.|+.|+.+.+||++...+...+.+|...|.++.|+|+|++++++++|.+
T Consensus 101 eAk~vrtLtgh~~~~~sv~f~P~~---~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~t 177 (825)
T KOG0267|consen 101 EAKIVRTLTGHLLNITSVDFHPYG---EFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNT 177 (825)
T ss_pred hhhhhhhhhccccCcceeeeccce---EEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcce
Confidence 9999988866543 3456677755 56788999999999999988899999999999999999999999999999999
Q ss_pred EEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCC
Q 007411 467 LRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR 546 (604)
Q Consensus 467 I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~ 546 (604)
++|||+..++....+. .|...+.++.++|..-+++.|+.|.+|++||+++-..+...... ...|.++.|+|++.
T Consensus 178 vki~d~~agk~~~ef~-~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~-----~~~v~~~~fn~~~~ 251 (825)
T KOG0267|consen 178 VKIWDLTAGKLSKEFK-SHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE-----TDGVRSLAFNPDGK 251 (825)
T ss_pred eeeecccccccccccc-cccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc-----cCCceeeeecCCce
Confidence 9999999998888775 48889999999999999999999999999999875555433332 45677899999999
Q ss_pred EEEEEcCCC
Q 007411 547 FVMSGDGEG 555 (604)
Q Consensus 547 ~L~sgs~dG 555 (604)
.+++|....
T Consensus 252 ~~~~G~q~s 260 (825)
T KOG0267|consen 252 IVLSGEQIS 260 (825)
T ss_pred eeecCchhh
Confidence 999987654
No 138
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=3.2e-19 Score=186.40 Aligned_cols=242 Identities=18% Similarity=0.274 Sum_probs=198.4
Q ss_pred CCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEE-eeC--CCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCC
Q 007411 356 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRT-FST--GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT 432 (604)
Q Consensus 356 h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~-~~~--~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s 432 (604)
-...|++++|+.+.+.||.+-.+|.|-||++..+=.... +.. ...+..++|+.. ..|++.+.+|.|.-||+.+
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~----~RLFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEG----GRLFSSGLSGSITEWDLHT 99 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccC----CeEEeecCCceEEEEeccc
Confidence 457899999999999999999999999999988644333 333 334456667632 4689999999999999999
Q ss_pred CceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecC-CCCcccEEEEcCCCCEEEEEEcCCeEE
Q 007411 433 KEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEP-HMHSMPSISLHPNTNWLAAQSLDNQIL 511 (604)
Q Consensus 433 ~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~-~~~~v~~l~~sp~g~~l~s~s~Dg~I~ 511 (604)
++....+....+.|.+++.+|.+..++.|++||.+..++....+........ ..+.+.+++|+|++..|++|+.||.|+
T Consensus 100 lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Ir 179 (691)
T KOG2048|consen 100 LKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIR 179 (691)
T ss_pred CceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEE
Confidence 9999999999999999999999999999999998888888877766554433 457899999999999999999999999
Q ss_pred EEEcCCceeecccccccCcc---cccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCC
Q 007411 512 IYSTRERFQLNKKKRFAGHI---VAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQ 588 (604)
Q Consensus 512 iwd~~~~~~~~~~~~~~~~~---~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~ 588 (604)
+||...+..+.....-.... ....|.++.|-.++ .|++|++.|.|.+||...+.++..+..|...|.+++..+ +.
T Consensus 180 iwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~-~~ 257 (691)
T KOG2048|consen 180 IWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVAD-NE 257 (691)
T ss_pred EEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcC-CC
Confidence 99998876654211111111 13345666666554 889999999999999999999999999999999999998 67
Q ss_pred CEEEEEeCCCcEEEe
Q 007411 589 SKVATCGWDGLIKYW 603 (604)
Q Consensus 589 ~~l~tgg~DG~I~vW 603 (604)
++|+++|.|+.|.-+
T Consensus 258 d~vfsaGvd~~ii~~ 272 (691)
T KOG2048|consen 258 DRVFSAGVDPKIIQY 272 (691)
T ss_pred CeEEEccCCCceEEE
Confidence 899999999998654
No 139
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=1.1e-21 Score=205.57 Aligned_cols=255 Identities=19% Similarity=0.382 Sum_probs=217.7
Q ss_pred CCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCC-CcceEE
Q 007411 326 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVV 404 (604)
Q Consensus 326 g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~-~~~~~~ 404 (604)
..+++....+-.+++|+.. .+..|...|.++..-..++.+++|+.|..+-+|.+.....+..+..+ ..+.++
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~-------~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl 76 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTR-------EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESL 76 (825)
T ss_pred ccccceeeeeeccccccch-------hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceee
Confidence 4455666667778888872 24578889999988778889999999999999999887777776554 445677
Q ss_pred EEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecC
Q 007411 405 KLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEP 484 (604)
Q Consensus 405 ~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~ 484 (604)
.|.+.. .+|++|..+|.|++||+...+.++++.+|...+.++.|+|-+.++++|+.|+.+++||++...+...+..
T Consensus 77 ~f~~~E---~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s- 152 (825)
T KOG0267|consen 77 TFDTSE---RLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKS- 152 (825)
T ss_pred ecCcch---hhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecC-
Confidence 887754 6899999999999999999999999999999999999999999999999999999999998888888765
Q ss_pred CCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC
Q 007411 485 HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS 564 (604)
Q Consensus 485 ~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t 564 (604)
|...+.++.|+|+|++++.++.|..++|||+..+... ..|.+| .+.+..+.|+|..-++++|+.|++|+|||+++
T Consensus 153 ~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~---~ef~~~--e~~v~sle~hp~e~Lla~Gs~d~tv~f~dlet 227 (825)
T KOG0267|consen 153 HTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLS---KEFKSH--EGKVQSLEFHPLEVLLAPGSSDRTVRFWDLET 227 (825)
T ss_pred CcceeEEEeecCCCceeeccCCcceeeeecccccccc---cccccc--cccccccccCchhhhhccCCCCceeeeeccce
Confidence 8889999999999999999999999999999877655 445555 45667788999999999999999999999999
Q ss_pred CeeEEEEecCCCcEEEEEEecCCCCEEEEEeCC
Q 007411 565 CKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWD 597 (604)
Q Consensus 565 ~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~D 597 (604)
.+.+.........|.+.+|+| ++..+++|...
T Consensus 228 fe~I~s~~~~~~~v~~~~fn~-~~~~~~~G~q~ 259 (825)
T KOG0267|consen 228 FEVISSGKPETDGVRSLAFNP-DGKIVLSGEQI 259 (825)
T ss_pred eEEeeccCCccCCceeeeecC-CceeeecCchh
Confidence 999998888888999999999 66666665543
No 140
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.85 E-value=1.2e-19 Score=175.04 Aligned_cols=292 Identities=18% Similarity=0.343 Sum_probs=216.3
Q ss_pred EEecCCCCCeEEEEEcC----CCCCEEEEEECCCcEEEEecCCCC--eeeEEec--CCCCceeeEEEccC----CCEEEE
Q 007411 307 HTWSGHTKGVSAIRFFP----KYGHLILSAGMDTKVKIWDVVNSG--KCMRTYM--GHSKAVRDISFCND----GTKFLT 374 (604)
Q Consensus 307 ~tl~gH~~~V~~l~fsp----~~g~~L~sgs~Dg~I~IWd~~~~~--~~~~~~~--~h~~~V~~l~fspd----g~~L~s 374 (604)
+...+|+.+|..++|.+ +....+++.+. ..+.||....++ ..++.+. .|......++|+-+ ..+|+.
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~ 110 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA 110 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence 34468999999999985 22456666664 578999885444 4444443 36777888888763 457889
Q ss_pred EECCCcEEEEECCCCcEEEEeeC-CCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEE---cCcCCceeEEE
Q 007411 375 ASYDKNIKYWDTETGQVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY---DQHLGAVNTIT 450 (604)
Q Consensus 375 ~s~Dg~I~vWD~~t~~~i~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~---~~h~~~V~~i~ 450 (604)
++.-|.|+|.|+.++++...+.. +..+.-+.+.|.. .+++++++.|..|++|++++..++..+ .+|.+.|.++.
T Consensus 111 ~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~--~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD 188 (385)
T KOG1034|consen 111 GGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDR--PQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVD 188 (385)
T ss_pred ecceeEEEEEecchhhhccceeccCccchhhhcCCCC--CcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEE
Confidence 99999999999999999887754 4556667777754 489999999999999999999988876 57999999999
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCCeEEEE---------------------------eecCCCCcccEEEEcCCCCEEEE
Q 007411 451 FVDSNRRFVTSSDDKSLRVWEFGIPVVIKY---------------------------ISEPHMHSMPSISLHPNTNWLAA 503 (604)
Q Consensus 451 ~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~---------------------------~~~~~~~~v~~l~~sp~g~~l~s 503 (604)
|+.++.+|++++.|.+|++|++..+..... ....|...|.|+.|- |+++++
T Consensus 189 ~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilS 266 (385)
T KOG1034|consen 189 FSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILS 266 (385)
T ss_pred EcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheee
Confidence 999999999999999999999974321111 112244445555553 678999
Q ss_pred EEcCCeEEEEEcC-Cceeec----------ccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeE--EE
Q 007411 504 QSLDNQILIYSTR-ERFQLN----------KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVF--RT 570 (604)
Q Consensus 504 ~s~Dg~I~iwd~~-~~~~~~----------~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~--~~ 570 (604)
-+-++.|..|... -...+. ....+.-.....+....+|.|-+++|+.|...|.|++||++...+. .+
T Consensus 267 kscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~tt 346 (385)
T KOG1034|consen 267 KSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTT 346 (385)
T ss_pred cccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCce
Confidence 9999999999862 111111 1112222222334556778888999999999999999999876652 22
Q ss_pred Eec--CCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007411 571 LKC--HEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 571 l~~--h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
+.. ....|...+|+. ++.+|+....|++|.-||
T Consensus 347 l~~s~~~~tVRQ~sfS~-dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 347 LTHSKSGSTVRQTSFSR-DGSILVLVCDDGTVWRWD 381 (385)
T ss_pred EEeccccceeeeeeecc-cCcEEEEEeCCCcEEEEE
Confidence 222 234789999999 788999999999999997
No 141
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.85 E-value=6.3e-20 Score=179.75 Aligned_cols=249 Identities=18% Similarity=0.292 Sum_probs=188.7
Q ss_pred EecCCCCCeEEEEEcCC-CCCEEEEEECCCcEEEEecCC---------------CCeeeEEecCCCCceeeEEEcc-CCC
Q 007411 308 TWSGHTKGVSAIRFFPK-YGHLILSAGMDTKVKIWDVVN---------------SGKCMRTYMGHSKAVRDISFCN-DGT 370 (604)
Q Consensus 308 tl~gH~~~V~~l~fsp~-~g~~L~sgs~Dg~I~IWd~~~---------------~~~~~~~~~~h~~~V~~l~fsp-dg~ 370 (604)
..-+|.+.|+.++-++- +..+.++-+..|.|+||++.. ..+++.++.+|...=+.|+||| ...
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g 225 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG 225 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc
Confidence 34478888888888776 246777778899999999832 2356777888888888888888 223
Q ss_pred EEEEEECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEE
Q 007411 371 KFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTIT 450 (604)
Q Consensus 371 ~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~ 450 (604)
.|++|..-+.|++|...+|.-.. . ...+.+|...|-.++
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~v-------------------------------------d----~~Pf~gH~~SVEDLq 264 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWKV-------------------------------------D----QRPFTGHTKSVEDLQ 264 (440)
T ss_pred ccccCccccceEeeeeccCceee-------------------------------------c----Cccccccccchhhhc
Confidence 47777777777777665433210 0 123446999999999
Q ss_pred EeCC-CCEEEEEeCCCcEEEEECCCC-eEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeccccccc
Q 007411 451 FVDS-NRRFVTSSDDKSLRVWEFGIP-VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFA 528 (604)
Q Consensus 451 ~sp~-~~~l~sgs~Dg~I~iwdl~~~-~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~ 528 (604)
|+|. ...|++||.||+|+|||++.+ +........|...|+.|.|+....+|++|+.||++.|||++.-..-.....|.
T Consensus 265 WSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk 344 (440)
T KOG0302|consen 265 WSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFK 344 (440)
T ss_pred cCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEE
Confidence 9996 458999999999999999987 22222335788999999999998899999999999999999866556666777
Q ss_pred CcccccceEEEEEcCC-CCEEEEEcCCCcEEEEeCCCCe----------------eEEEEecCC--CcEEEEEEecCCCC
Q 007411 529 GHIVAGYACQVNFSPD-GRFVMSGDGEGKCWFWDWKSCK----------------VFRTLKCHE--GVCIGCEWHPLEQS 589 (604)
Q Consensus 529 ~~~~~~~v~~l~~spd-g~~L~sgs~dG~I~iwd~~t~~----------------~~~~l~~h~--~~V~~v~~sp~~~~ 589 (604)
-| ..+|++|.|+|. ...|++++.|..|.|||+..-. +-+.+-.|. ..+..+.|+++-..
T Consensus 345 ~H--k~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG 422 (440)
T KOG0302|consen 345 YH--KAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPG 422 (440)
T ss_pred ec--cCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCC
Confidence 77 578999999994 5678888899999999985311 111222353 36888999999899
Q ss_pred EEEEEeCCCc
Q 007411 590 KVATCGWDGL 599 (604)
Q Consensus 590 ~l~tgg~DG~ 599 (604)
+|++.+.||.
T Consensus 423 ~lvsTa~dGf 432 (440)
T KOG0302|consen 423 LLVSTAIDGF 432 (440)
T ss_pred eEEEecccce
Confidence 9999999984
No 142
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.84 E-value=2.8e-20 Score=174.48 Aligned_cols=298 Identities=13% Similarity=0.210 Sum_probs=207.4
Q ss_pred cCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEec-CCCCceeeEEEccCCCEEEEEECCC
Q 007411 301 IPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYM-GHSKAVRDISFCNDGTKFLTASYDK 379 (604)
Q Consensus 301 ~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~-~h~~~V~~l~fspdg~~L~s~s~Dg 379 (604)
.|+.++..+++|.+.|+|+.|-.+ .+|++|..-|.|++|++ .+...+..+. .|...|+.+.--|+ ..|.+-+.|+
T Consensus 2 ~pPdP~fvLRp~~~~v~s~~fqa~--~rL~sg~~~G~V~~w~l-qt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~ 77 (323)
T KOG0322|consen 2 VPPDPFFVLRPHSSSVTSVLFQAN--ERLMSGLSVGIVKMWVL-QTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDP 77 (323)
T ss_pred CCCCCeeEeccccchheehhhccc--hhhhcccccceEEEEEe-ecCccchhhhhhccceeeceeecCC-cchhhcCCCc
Confidence 466788899999999999999876 46999999999999999 5666666677 67888999998887 5688899999
Q ss_pred cEEEEECCCCcEEEEee--CCCcceE-EEEccCCCCC-cEEEEEEcCC-eEEEEeCCCCceEEEE----cCcCCceeEEE
Q 007411 380 NIKYWDTETGQVIRTFS--TGKIPYV-VKLNPDDDKQ-NILLAGMSDK-KIVQWDMNTKEITQEY----DQHLGAVNTIT 450 (604)
Q Consensus 380 ~I~vWD~~t~~~i~~~~--~~~~~~~-~~~~~~~~~~-~~lvsg~~dg-~I~iwD~~s~~~~~~~----~~h~~~V~~i~ 450 (604)
.+.+|++..+..+..-. ..+...| ..+.+.+... .+++.-+... .+.+-|......++.. ....+.+.|..
T Consensus 78 ~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~ 157 (323)
T KOG0322|consen 78 LLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQD 157 (323)
T ss_pred eEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeee
Confidence 99999998765443322 1111111 1111111111 1111111110 1222232222222222 23456677777
Q ss_pred EeC-CCC--EEEEEeCCCcEEEEECCCCeEEEEee---------cCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCc
Q 007411 451 FVD-SNR--RFVTSSDDKSLRVWEFGIPVVIKYIS---------EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRER 518 (604)
Q Consensus 451 ~sp-~~~--~l~sgs~Dg~I~iwdl~~~~~~~~~~---------~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~ 518 (604)
+.- ++. +++.|..+|.+.+||+..+..+..+. ..|..++.++.+.+.-..=++|+.+..+..|++...
T Consensus 158 ~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s 237 (323)
T KOG0322|consen 158 KDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHS 237 (323)
T ss_pred ccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccc
Confidence 432 233 46788899999999998874333321 247788999999887666778888888999988653
Q ss_pred eeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCC
Q 007411 519 FQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDG 598 (604)
Q Consensus 519 ~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG 598 (604)
............ ....+..+.+-||++.+|+++.|++|+||++++..++..++-|.+.|++++|+| +..+++++|.|+
T Consensus 238 ~gslq~~~e~~l-knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfsp-d~~lmAaaskD~ 315 (323)
T KOG0322|consen 238 TGSLQIRKEITL-KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSP-DCELMAAASKDA 315 (323)
T ss_pred cCcccccceEEe-cCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCC-CCchhhhccCCc
Confidence 211111111111 123455688999999999999999999999999999999999999999999999 678999999999
Q ss_pred cEEEeC
Q 007411 599 LIKYWD 604 (604)
Q Consensus 599 ~I~vWD 604 (604)
+|.+|+
T Consensus 316 rISLWk 321 (323)
T KOG0322|consen 316 RISLWK 321 (323)
T ss_pred eEEeee
Confidence 999996
No 143
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.84 E-value=4.2e-20 Score=186.34 Aligned_cols=236 Identities=17% Similarity=0.295 Sum_probs=194.7
Q ss_pred CCCCceeeEEEccCCCEEEEEECCCcEEEEECCCC---cEEEEe---eCCCcceEEEEccCCCCCcEEEEEEcCCeEEEE
Q 007411 355 GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG---QVIRTF---STGKIPYVVKLNPDDDKQNILLAGMSDKKIVQW 428 (604)
Q Consensus 355 ~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~---~~i~~~---~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iw 428 (604)
.|..-|.++.++...++++||+. |.|+|||+... .++..+ ........+.+.+++ +.|++|+.-.+|.||
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdg---rtLivGGeastlsiW 492 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDG---RTLIVGGEASTLSIW 492 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCC---ceEEeccccceeeee
Confidence 58889999999999999999986 89999999643 223332 234445566677654 679999999999999
Q ss_pred eCCCCce--EEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEc
Q 007411 429 DMNTKEI--TQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL 506 (604)
Q Consensus 429 D~~s~~~--~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~ 506 (604)
|+..... ..++....-.+..++.+||.+..+++..||.|.|||+++...++.+. +|...+.||.++++|..|.+|+.
T Consensus 493 DLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqfq-GhtDGascIdis~dGtklWTGGl 571 (705)
T KOG0639|consen 493 DLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQ-GHTDGASCIDISKDGTKLWTGGL 571 (705)
T ss_pred eccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeeccc-CCCCCceeEEecCCCceeecCCC
Confidence 9986543 33344444567789999999999999999999999999999888885 69999999999999999999999
Q ss_pred CCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecC
Q 007411 507 DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPL 586 (604)
Q Consensus 507 Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~ 586 (604)
|++|+.||++.+..+ ..|.....|.++.++|.+.+|++|-.++.+.|..... .....+..|...|.++.|.+
T Consensus 572 DntvRcWDlregrql------qqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~sk-p~kyqlhlheScVLSlKFa~- 643 (705)
T KOG0639|consen 572 DNTVRCWDLREGRQL------QQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK-PEKYQLHLHESCVLSLKFAY- 643 (705)
T ss_pred ccceeehhhhhhhhh------hhhhhhhhheecccCCCccceeeecccCcEEEEecCC-ccceeecccccEEEEEEecc-
Confidence 999999999987544 3344467788899999999999999999999988544 44455677999999999999
Q ss_pred CCCEEEEEeCCCcEEEe
Q 007411 587 EQSKVATCGWDGLIKYW 603 (604)
Q Consensus 587 ~~~~l~tgg~DG~I~vW 603 (604)
-+.++++.|.|..+..|
T Consensus 644 cGkwfvStGkDnlLnaw 660 (705)
T KOG0639|consen 644 CGKWFVSTGKDNLLNAW 660 (705)
T ss_pred cCceeeecCchhhhhhc
Confidence 78899999999998888
No 144
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=2.4e-19 Score=172.16 Aligned_cols=228 Identities=17% Similarity=0.300 Sum_probs=186.0
Q ss_pred ceeeccCccccccceeecCCCccccCCCCcccCcceeEEecCCCCCeEEEEEcCCCCC--EEEEEECCCcEEEEecCCCC
Q 007411 270 STFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGH--LILSAGMDTKVKIWDVVNSG 347 (604)
Q Consensus 270 s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~fsp~~g~--~L~sgs~Dg~I~IWd~~~~~ 347 (604)
..|..++..|...+.|-. ...+.+..+-.|.+.|+++.|.+. .. .|++|+.||.|.+|++ ..-
T Consensus 53 ~~~~aSGssDetI~IYDm-------------~k~~qlg~ll~HagsitaL~F~~~-~S~shLlS~sdDG~i~iw~~-~~W 117 (362)
T KOG0294|consen 53 GPYVASGSSDETIHIYDM-------------RKRKQLGILLSHAGSITALKFYPP-LSKSHLLSGSDDGHIIIWRV-GSW 117 (362)
T ss_pred ceeEeccCCCCcEEEEec-------------cchhhhcceeccccceEEEEecCC-cchhheeeecCCCcEEEEEc-CCe
Confidence 445566666666666533 233556778889999999999987 43 8999999999999999 678
Q ss_pred eeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEE
Q 007411 348 KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQ 427 (604)
Q Consensus 348 ~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~i 427 (604)
.++.++.+|.+.|+.|+.+|.|++-++.+.|+.+++||+-+|+.-......+....+.|.+.++ .|+.+.. ..|-+
T Consensus 118 ~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd---~F~v~~~-~~i~i 193 (362)
T KOG0294|consen 118 ELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGD---HFVVSGR-NKIDI 193 (362)
T ss_pred EEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCC---EEEEEec-cEEEE
Confidence 9999999999999999999999999999999999999999999988888888888899987654 4555554 56888
Q ss_pred EeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEE--cCCCCEEEEEE
Q 007411 428 WDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISL--HPNTNWLAAQS 505 (604)
Q Consensus 428 wD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~--sp~g~~l~s~s 505 (604)
|.+.+..+...+. ....+.|+.|. ++..|++|.+|+.|.+||.....+...+. .|...|..+.+ .|.+.+|++++
T Consensus 194 ~q~d~A~v~~~i~-~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~-AH~~RVK~i~~~~~~~~~~lvTaS 270 (362)
T KOG0294|consen 194 YQLDNASVFREIE-NPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFL-AHENRVKDIASYTNPEHEYLVTAS 270 (362)
T ss_pred EecccHhHhhhhh-ccccceeeeec-CCceEEEecCCceEEEeccCCCccceeee-cchhheeeeEEEecCCceEEEEec
Confidence 9888776655553 23567788886 46689999999999999998866666554 69999999884 46788999999
Q ss_pred cCCeEEEEEcCCce
Q 007411 506 LDNQILIYSTRERF 519 (604)
Q Consensus 506 ~Dg~I~iwd~~~~~ 519 (604)
.||.|++||++...
T Consensus 271 SDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 271 SDGFIKVWDIDMET 284 (362)
T ss_pred cCceEEEEEccccc
Confidence 99999999997653
No 145
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.84 E-value=1.4e-19 Score=182.49 Aligned_cols=259 Identities=18% Similarity=0.269 Sum_probs=197.5
Q ss_pred CeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCe-----eeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCC
Q 007411 315 GVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGK-----CMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG 389 (604)
Q Consensus 315 ~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~-----~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~ 389 (604)
+|.+++|...+.-.+++.+.|..|++|.- .++ .++...+ ..-.|++......++++|+..++|+|||++..
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K--~g~~~~Vp~~~k~~g--d~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k 111 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEK--DGKTPEVPRVRKLTG--DNAFCVACASQSLYEISGGQSGCVKIWDLRAK 111 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecc--cCCCCccceeecccc--chHHHHhhhhcceeeeccCcCceeeehhhHHH
Confidence 38999998872223344456788999975 332 2222222 24455555555689999999999999999955
Q ss_pred cEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCC-ceeEEEEeCCCCE-EEEEeCCCcE
Q 007411 390 QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLG-AVNTITFVDSNRR-FVTSSDDKSL 467 (604)
Q Consensus 390 ~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~-~V~~i~~sp~~~~-l~sgs~Dg~I 467 (604)
.+.+.++.+ ...+..+..+. ...+|++++..|.|.+..+.++.....+....+ .|.-+.+++..+. |.+++++|.|
T Consensus 112 l~hr~lkdh-~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~V 189 (673)
T KOG4378|consen 112 LIHRFLKDH-QSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAV 189 (673)
T ss_pred HHhhhccCC-cceeEEEEecC-CcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeE
Confidence 555555443 34333333322 236899999999999999999988777765534 4568999998765 5678999999
Q ss_pred EEEECCCCeEEEEeecCCCCcccEEEEcCCC-CEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCC
Q 007411 468 RVWEFGIPVVIKYISEPHMHSMPSISLHPNT-NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR 546 (604)
Q Consensus 468 ~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g-~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~ 546 (604)
.+||+....++......|..+...|||+|.. .+|++.+.|..|.+||++.......+. ...+...++|+++|.
T Consensus 190 tlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~------y~~Plstvaf~~~G~ 263 (673)
T KOG4378|consen 190 TLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT------YSHPLSTVAFSECGT 263 (673)
T ss_pred EEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee------ecCCcceeeecCCce
Confidence 9999999999988888999999999999965 678889999999999998654332221 134566899999999
Q ss_pred EEEEEcCCCcEEEEeCCC-CeeEEEEecCCCcEEEEEEec
Q 007411 547 FVMSGDGEGKCWFWDWKS-CKVFRTLKCHEGVCIGCEWHP 585 (604)
Q Consensus 547 ~L~sgs~dG~I~iwd~~t-~~~~~~l~~h~~~V~~v~~sp 585 (604)
+|++|...|.|..||++. ..++..+.+|...|++++|-|
T Consensus 264 ~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~ 303 (673)
T KOG4378|consen 264 YLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQP 303 (673)
T ss_pred EEEeecCCceEEEEecccCCCCceEeeecccceeEEEeee
Confidence 999999999999999986 457889999999999999988
No 146
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.84 E-value=7.8e-19 Score=169.06 Aligned_cols=272 Identities=18% Similarity=0.260 Sum_probs=206.3
Q ss_pred eEEEEEcCCCCCEEEEEECCCcEEEEecCCCC-------e----eeEEec-CCCCceeeEEEc-------cCCCEEEEEE
Q 007411 316 VSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG-------K----CMRTYM-GHSKAVRDISFC-------NDGTKFLTAS 376 (604)
Q Consensus 316 V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~-------~----~~~~~~-~h~~~V~~l~fs-------pdg~~L~s~s 376 (604)
...+.|+|+ |..|++-+.|..+.+|++..+. . ....++ .....|.+.+|- |+..++++.+
T Consensus 52 ~kgckWSPD-GSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 52 LKGCKWSPD-GSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hccceeCCC-CceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 345789999 9999999999999999983211 0 011111 234568888886 5678999999
Q ss_pred CCCcEEEEECCCCcEEEEeeCC------CcceEEEEccCCCCCcEEEEEEcCCeEEEEeC-CCCceEEE--E-----cCc
Q 007411 377 YDKNIKYWDTETGQVIRTFSTG------KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDM-NTKEITQE--Y-----DQH 442 (604)
Q Consensus 377 ~Dg~I~vWD~~t~~~i~~~~~~------~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~-~s~~~~~~--~-----~~h 442 (604)
.+.-|++||.-+|+....+..- ....+++|++++. .|++ +....|++||+ |.|.-... . .+.
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGe---qlfa-GykrcirvFdt~RpGr~c~vy~t~~~~k~gq 206 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGE---QLFA-GYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQ 206 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCC---eEee-cccceEEEeeccCCCCCCcchhhhhcccccc
Confidence 9999999999999988877542 2346788888764 4555 45789999999 66542221 1 234
Q ss_pred CCceeEEEEeCCCC-EEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEc-CCeEEEEEcCCcee
Q 007411 443 LGAVNTITFVDSNR-RFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL-DNQILIYSTRERFQ 520 (604)
Q Consensus 443 ~~~V~~i~~sp~~~-~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~-Dg~I~iwd~~~~~~ 520 (604)
.+-|.|++|+|... .+++|+...++-||.-....++..+. +|.+.|+.+.|+++|+.|.+|+. |..|..||++....
T Consensus 207 ~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llg-gh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~ 285 (406)
T KOG2919|consen 207 KGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLG-GHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRD 285 (406)
T ss_pred cceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeec-ccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccc
Confidence 67899999999765 88999999999999887777777665 79999999999999999999875 67899999986432
Q ss_pred ecccccccCccc-ccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC-CeeEEEEecCCCcEEEEEEecCCCCEEEEEeC
Q 007411 521 LNKKKRFAGHIV-AGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS-CKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW 596 (604)
Q Consensus 521 ~~~~~~~~~~~~-~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t-~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~ 596 (604)
. +..+..|.. ...-.-....|+|++|++|+.+|.|++||++. +..+..+..|...|+.++++| --.+++|++.
T Consensus 286 p--v~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP-~mpilatssG 360 (406)
T KOG2919|consen 286 P--VYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNP-IMPILATSSG 360 (406)
T ss_pred h--hhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCc-ccceeeeccC
Confidence 2 223333322 22223467789999999999999999999998 787888889999999999999 4567777764
No 147
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=8e-19 Score=168.58 Aligned_cols=245 Identities=18% Similarity=0.319 Sum_probs=178.4
Q ss_pred EEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCc-----EEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeE
Q 007411 351 RTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ-----VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKI 425 (604)
Q Consensus 351 ~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~-----~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I 425 (604)
..+.+|.+.|++++|+.||+.|++++.|+.|+||+++... +++.--.-..+..+.|.|+-. .++++.-...+|
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~--s~vv~~~~g~~l 157 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCK--SVVVSVKRGNKL 157 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcc--eEEEEEccCCEE
Confidence 3578999999999999999999999999999999997532 233222234677788888654 567777778899
Q ss_pred EEEeCCCC---ceEEE---------EcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEE
Q 007411 426 VQWDMNTK---EITQE---------YDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSIS 493 (604)
Q Consensus 426 ~iwD~~s~---~~~~~---------~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~ 493 (604)
++|-+... ..... -+.|.-.|..+-....+.+|++++.|..|.+|+++ ++.+..+.. ....-...+
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idt-nq~~n~~aa 235 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDT-NQSSNYDAA 235 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecc-cccccccee
Confidence 99976432 11111 12355667777777888999999999999999998 777777653 445567789
Q ss_pred EcCCCCEEEEEEcCCeEEEEEcC---Cc--eeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC----
Q 007411 494 LHPNTNWLAAQSLDNQILIYSTR---ER--FQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS---- 564 (604)
Q Consensus 494 ~sp~g~~l~s~s~Dg~I~iwd~~---~~--~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t---- 564 (604)
++|+|++|++++..-.|++|.+- .+ +...+...+.|| ...|..++||++...+++.+.||+++|||+.-
T Consensus 236 vSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH--~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~ 313 (420)
T KOG2096|consen 236 VSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGH--QSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEA 313 (420)
T ss_pred eCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccc--hhheeeeeeCCCcceeEEEecCCcEEEeeccceEec
Confidence 99999999999999999999862 22 233445567788 56788999999999999999999999999742
Q ss_pred ---CeeEEEE----ecCCCcEEEEEEecCCCCEEEEEeCCCcEEEe
Q 007411 565 ---CKVFRTL----KCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 603 (604)
Q Consensus 565 ---~~~~~~l----~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vW 603 (604)
.+.+++. .+..+.-..+..+| ++..|+... ...|+++
T Consensus 314 ~qDpk~Lk~g~~pl~aag~~p~RL~lsP-~g~~lA~s~-gs~l~~~ 357 (420)
T KOG2096|consen 314 GQDPKILKEGSAPLHAAGSEPVRLELSP-SGDSLAVSF-GSDLKVF 357 (420)
T ss_pred CCCchHhhcCCcchhhcCCCceEEEeCC-CCcEEEeec-CCceEEE
Confidence 2223322 12223344789999 555554432 3345554
No 148
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=4.2e-19 Score=182.79 Aligned_cols=246 Identities=20% Similarity=0.311 Sum_probs=195.3
Q ss_pred eeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEE
Q 007411 348 KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQ 427 (604)
Q Consensus 348 ~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~i 427 (604)
.+-..+.+|.+.|++|...|.|.+|++|+.||+|+||.+.+|.|++++.....+.+++|+|.+.. .+|+++.... +.+
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~-~vLAvA~~~~-~~i 468 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDL-CVLAVAVGEC-VLI 468 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCc-eeEEEEecCc-eEE
Confidence 34556789999999999999999999999999999999999999999999999999999998764 3444443333 444
Q ss_pred EeCCCCc-------------------------------------eEEEEcCcCCceeEEEEeCCCCEEEEEeCC---CcE
Q 007411 428 WDMNTKE-------------------------------------ITQEYDQHLGAVNTITFVDSNRRFVTSSDD---KSL 467 (604)
Q Consensus 428 wD~~s~~-------------------------------------~~~~~~~h~~~V~~i~~sp~~~~l~sgs~D---g~I 467 (604)
.+..-|. -+...-.|...|+.+.|+..|.+|++...+ ..|
T Consensus 469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~V 548 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSV 548 (733)
T ss_pred eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceE
Confidence 4432110 012223477889999999999999987654 578
Q ss_pred EEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCE
Q 007411 468 RVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRF 547 (604)
Q Consensus 468 ~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~ 547 (604)
.|+++.......-+. ...+.+.++.|||...+|++++ ...|+|||+.....+... +.+ ..++..++++|.|.-
T Consensus 549 liHQLSK~~sQ~PF~-kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL--~tg---~kwiS~msihp~GDn 621 (733)
T KOG0650|consen 549 LIHQLSKRKSQSPFR-KSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKL--LTG---SKWISSMSIHPNGDN 621 (733)
T ss_pred EEEecccccccCchh-hcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHH--hcC---CeeeeeeeecCCCCe
Confidence 899887655443332 3567799999999999998877 466999999764443322 222 356788999999999
Q ss_pred EEEEcCCCcEEEEeCCC-CeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEe
Q 007411 548 VMSGDGEGKCWFWDWKS-CKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 603 (604)
Q Consensus 548 L~sgs~dG~I~iwd~~t-~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vW 603 (604)
|+.|+.|+.++.+|+.- .+++++++.|...+++|+||+ .-.++++|+.||++.|+
T Consensus 622 li~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~-ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 622 LILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHK-RYPLFASGSDDGTVIVF 677 (733)
T ss_pred EEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcc-ccceeeeecCCCcEEEE
Confidence 99999999999999974 578999999999999999999 77799999999999886
No 149
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=2.3e-19 Score=174.11 Aligned_cols=274 Identities=16% Similarity=0.221 Sum_probs=195.8
Q ss_pred CEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEcc--CCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcc--e
Q 007411 327 HLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCN--DGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP--Y 402 (604)
Q Consensus 327 ~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fsp--dg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~--~ 402 (604)
..+|++-+.|.|+|||. .+++.+..+.+|...++.+.|.. ....+.+|+.||+|++||+++......+.....+ .
T Consensus 41 ~~vav~lSngsv~lyd~-~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~ 119 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDK-GTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTP 119 (376)
T ss_pred eeEEEEecCCeEEEEec-cchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCc
Confidence 67888999999999999 57899999999999999999987 5678999999999999999988776665543333 2
Q ss_pred EEEEccCCCCCcEEEEEE----cCCeEEEEeCCCCce-EEE-EcCcCCceeEEEEeCC-CCEEEEEeCCCcEEEEECCCC
Q 007411 403 VVKLNPDDDKQNILLAGM----SDKKIVQWDMNTKEI-TQE-YDQHLGAVNTITFVDS-NRRFVTSSDDKSLRVWEFGIP 475 (604)
Q Consensus 403 ~~~~~~~~~~~~~lvsg~----~dg~I~iwD~~s~~~-~~~-~~~h~~~V~~i~~sp~-~~~l~sgs~Dg~I~iwdl~~~ 475 (604)
.+++... -+.+++++|. .+-.|.+||+|..+. +.. ...|...|+++.|+|. .++|++||.||.|.+||+...
T Consensus 120 f~~ld~n-ck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 120 FICLDLN-CKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred ceEeecc-CcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 2333322 2346777775 367899999998765 444 4679999999999996 568999999999999999765
Q ss_pred eEEEEee--cCCCCcccEEEEcCCC-CEEEEEEcCCeEEEEEcCCceeecccccc-------cCcccccceEEEEEcCCC
Q 007411 476 VVIKYIS--EPHMHSMPSISLHPNT-NWLAAQSLDNQILIYSTRERFQLNKKKRF-------AGHIVAGYACQVNFSPDG 545 (604)
Q Consensus 476 ~~~~~~~--~~~~~~v~~l~~sp~g-~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~-------~~~~~~~~v~~l~~spdg 545 (604)
..-..+. ..+..+|.++.|+.++ +.|.+-+......+|++..+........- .......++...-...++
T Consensus 199 ~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~ 278 (376)
T KOG1188|consen 199 NEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDK 278 (376)
T ss_pred cchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCc
Confidence 3211111 1356679999999876 56888888999999999876533222111 001112233333222344
Q ss_pred CEEEEEcC-CCcEEEEeCC---C---CeeEEEEec-CCCcEEEEEEecCCCCEEEEEeCCCcEEEe
Q 007411 546 RFVMSGDG-EGKCWFWDWK---S---CKVFRTLKC-HEGVCIGCEWHPLEQSKVATCGWDGLIKYW 603 (604)
Q Consensus 546 ~~L~sgs~-dG~I~iwd~~---t---~~~~~~l~~-h~~~V~~v~~sp~~~~~l~tgg~DG~I~vW 603 (604)
..++.++. -|...++-+. + .+.+..+.+ |...|+++.|.. ...++.|||.||.|.+|
T Consensus 279 ~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~-~~~~l~TGGEDG~l~~W 343 (376)
T KOG1188|consen 279 DTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDV-KNDVLYTGGEDGLLQAW 343 (376)
T ss_pred ceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhc-ccceeeccCCCceEEEE
Confidence 55554444 5555555432 2 345666766 666788888876 67899999999999999
No 150
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.83 E-value=7.3e-19 Score=182.46 Aligned_cols=272 Identities=16% Similarity=0.299 Sum_probs=209.6
Q ss_pred CeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEE
Q 007411 315 GVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRT 394 (604)
Q Consensus 315 ~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~ 394 (604)
.|..++|-|++.++++.++ ..+.|||. +++..+.++++|...|.|++|+.+|.+|++|+.|..|.+|.-. -+-+..
T Consensus 14 ci~d~afkPDGsqL~lAAg--~rlliyD~-ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k-lEG~Lk 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG--SRLLVYDT-SDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK-LEGILK 89 (1081)
T ss_pred chheeEECCCCceEEEecC--CEEEEEeC-CCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccc-ccceee
Confidence 7999999999545554443 57999999 7899999999999999999999999999999999999999854 344556
Q ss_pred eeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 007411 395 FSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGI 474 (604)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~ 474 (604)
++.+..+.|+.|+|.. +.+++++ =...-+|........ .. .....|.+++|..+|++|+.|-.+|+|.+-+-..
T Consensus 90 YSH~D~IQCMsFNP~~---h~LasCs-LsdFglWS~~qK~V~-K~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~g 163 (1081)
T KOG1538|consen 90 YSHNDAIQCMSFNPIT---HQLASCS-LSDFGLWSPEQKSVS-KH-KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNG 163 (1081)
T ss_pred eccCCeeeEeecCchH---HHhhhcc-hhhccccChhhhhHH-hh-hhheeEEEeeecCCCcEEEEeccCceEEeecCCC
Confidence 6677788888888865 3455544 344667776544322 11 1345788999999999999999999999986433
Q ss_pred CeEEE-EeecCCCCcccEEEEcCCC-----CEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEE
Q 007411 475 PVVIK-YISEPHMHSMPSISLHPNT-----NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFV 548 (604)
Q Consensus 475 ~~~~~-~~~~~~~~~v~~l~~sp~g-----~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L 548 (604)
...+. ....+...+|.+++|+|+. ..+++.....++.+|.+.... +...+.+ .-..+++.+.++|.|+
T Consensus 164 Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~-Igk~r~L-----~FdP~CisYf~NGEy~ 237 (1081)
T KOG1538|consen 164 EEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ-IGKDRAL-----NFDPCCISYFTNGEYI 237 (1081)
T ss_pred CcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEeccee-ecccccC-----CCCchhheeccCCcEE
Confidence 22222 2223467789999999963 578888888999999886543 3222222 1223468999999999
Q ss_pred EEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007411 549 MSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 549 ~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
+.|+.|+.+.+|- +.|-.+.++-..+..|++++.+| ++..++.|+.||+|-.|+
T Consensus 238 LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~P-NsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 238 LLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKP-NSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred EEccCCCceEEEe-ecCeEEeeccccceeEEEEEEcc-CCceEEEEEccCeeehhh
Confidence 9999999999997 67777888877788999999999 788999999999998764
No 151
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.2e-18 Score=170.96 Aligned_cols=293 Identities=16% Similarity=0.165 Sum_probs=216.9
Q ss_pred eEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecC-----CCCeeeEEec-CCCCceeeEEEccCCCEEEEEECCC
Q 007411 306 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVV-----NSGKCMRTYM-GHSKAVRDISFCNDGTKFLTASYDK 379 (604)
Q Consensus 306 i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~-----~~~~~~~~~~-~h~~~V~~l~fspdg~~L~s~s~Dg 379 (604)
..-+.+|.+.|.+|.|+.+ +++|++|+.|..+++|++. ...+++.... .|...|.|++|....+.|++|..++
T Consensus 49 qKD~~~H~GCiNAlqFS~N-~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~ 127 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHN-DRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWG 127 (609)
T ss_pred hhhhhhhccccceeeeccC-CeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcc
Confidence 3456799999999999999 9999999999999999983 1234444433 3568999999999999999999999
Q ss_pred cEEEEECCCCcEEEEeeCCC---cceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCc-eE--EEEcCcCCceeEEEEeC
Q 007411 380 NIKYWDTETGQVIRTFSTGK---IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE-IT--QEYDQHLGAVNTITFVD 453 (604)
Q Consensus 380 ~I~vWD~~t~~~i~~~~~~~---~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~-~~--~~~~~h~~~V~~i~~sp 453 (604)
+|.+.|+++.+.+..+.... .++-+..+|. .++|++.+.++.|.+||.+... .. ..+........++.|+|
T Consensus 128 ~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~---DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P 204 (609)
T KOG4227|consen 128 TVIKHDIETKQSIYVANENNNRGDVYHMDQHPT---DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHP 204 (609)
T ss_pred eeEeeecccceeeeeecccCcccceeecccCCC---CceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecC
Confidence 99999999999998887654 5566666665 3789999999999999998654 11 12223445677889998
Q ss_pred CCC-EEEEEeCCCcEEEEECCCCeEEEEee-----cCC-CCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeec-ccc
Q 007411 454 SNR-RFVTSSDDKSLRVWEFGIPVVIKYIS-----EPH-MHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN-KKK 525 (604)
Q Consensus 454 ~~~-~l~sgs~Dg~I~iwdl~~~~~~~~~~-----~~~-~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~-~~~ 525 (604)
... +|++.+..+-+-+||.+.+....... .+. ...-.++.|+|+|..|++.-....-.+||+-+..+.. +..
T Consensus 205 ~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D 284 (609)
T KOG4227|consen 205 ETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD 284 (609)
T ss_pred CCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc
Confidence 754 66778888889999998764322111 111 2234567899999999887777777788876532221 111
Q ss_pred -cccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC----------C-------------eeEEEEecCCCcEEEE
Q 007411 526 -RFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS----------C-------------KVFRTLKCHEGVCIGC 581 (604)
Q Consensus 526 -~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t----------~-------------~~~~~l~~h~~~V~~v 581 (604)
...|-.+...+.+++|.-|- -+++|+.+-.|++|.+.. | +.+..+++|...+..+
T Consensus 285 ~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQV 363 (609)
T KOG4227|consen 285 HNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQV 363 (609)
T ss_pred CCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccce
Confidence 11122223334556776554 489999999999998742 1 2356788999999999
Q ss_pred EEecCCCCEEEEEeCCCcEEEeC
Q 007411 582 EWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 582 ~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
.|+| ...+|++.|....|+||-
T Consensus 364 RF~~-H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 364 RFSQ-HNNLLVSSGVENSFKLWS 385 (609)
T ss_pred eecC-CcceEeccchhhheeccc
Confidence 9999 678999999999999993
No 152
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=3.5e-19 Score=178.02 Aligned_cols=236 Identities=20% Similarity=0.312 Sum_probs=178.9
Q ss_pred CCEEEEEECCCcEEEEecCCCC--eeeE------------------EecCCCCceeeEEEccC-CCEEEEEECCCcEEEE
Q 007411 326 GHLILSAGMDTKVKIWDVVNSG--KCMR------------------TYMGHSKAVRDISFCND-GTKFLTASYDKNIKYW 384 (604)
Q Consensus 326 g~~L~sgs~Dg~I~IWd~~~~~--~~~~------------------~~~~h~~~V~~l~fspd-g~~L~s~s~Dg~I~vW 384 (604)
|+++|.|.+|..|.|||+.--. .+.. .-.+|+..|.+|+|+.. .+.|+|||.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 6799999999999999983111 1111 12369999999999884 4688999999999999
Q ss_pred ECCCCcEEEEee-CCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCC-CEEEEEe
Q 007411 385 DTETGQVIRTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSN-RRFVTSS 462 (604)
Q Consensus 385 D~~t~~~i~~~~-~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~-~~l~sgs 462 (604)
|+.++++..++. .+..+.++.|++... .+|++|+.|++|.+.|+|........-...+.|-.++|.|.. ..|++++
T Consensus 272 D~~~g~p~~s~~~~~k~Vq~l~wh~~~p--~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~t 349 (463)
T KOG0270|consen 272 DVDTGKPKSSITHHGKKVQTLEWHPYEP--SVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVST 349 (463)
T ss_pred EcCCCCcceehhhcCCceeEEEecCCCc--eEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEec
Confidence 999999999998 456677888887654 799999999999999999533322222356789999999864 4688889
Q ss_pred CCCcEEEEECCCC-eEEEEeecCCCCcccEEEEcCCC-CEEEEEEcCCeEEEEEcCCceeecccccccCcc-cccceEEE
Q 007411 463 DDKSLRVWEFGIP-VVIKYISEPHMHSMPSISLHPNT-NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHI-VAGYACQV 539 (604)
Q Consensus 463 ~Dg~I~iwdl~~~-~~~~~~~~~~~~~v~~l~~sp~g-~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~-~~~~v~~l 539 (604)
.||+|+-+|+|.. +++..+ ..|..+|.++++++.- .++++++.|+.|.+|++....... ...|. .-+..+|.
T Consensus 350 ddG~v~~~D~R~~~~~vwt~-~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~----v~~~~~~~~rl~c~ 424 (463)
T KOG0270|consen 350 DDGTVYYFDIRNPGKPVWTL-KAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKS----VKEHSFKLGRLHCF 424 (463)
T ss_pred CCceEEeeecCCCCCceeEE-EeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcc----cccccccccceeec
Confidence 9999999999988 455444 4799999999998864 678899999999999986533211 11111 12335567
Q ss_pred EEcCCCC-EEEEEcCCCcEEEEeCCCCeeE
Q 007411 540 NFSPDGR-FVMSGDGEGKCWFWDWKSCKVF 568 (604)
Q Consensus 540 ~~spdg~-~L~sgs~dG~I~iwd~~t~~~~ 568 (604)
++.|+-. +++.|+..+.++|||+.+...+
T Consensus 425 ~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 425 ALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ccCCCcceEEEecCccceEEEeecccChhH
Confidence 7777654 5667888888999999876654
No 153
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.82 E-value=2.7e-18 Score=189.33 Aligned_cols=304 Identities=17% Similarity=0.257 Sum_probs=223.2
Q ss_pred cCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCC------CeeeEEecCCCCceeeEEEccCCCEEEE
Q 007411 301 IPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNS------GKCMRTYMGHSKAVRDISFCNDGTKFLT 374 (604)
Q Consensus 301 ~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~------~~~~~~~~~h~~~V~~l~fspdg~~L~s 374 (604)
....++..+..|+..|..++.++..+.+++|||.||+|++|+...- .++..++......+.++.+.+.++.+|+
T Consensus 1036 p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av 1115 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAV 1115 (1431)
T ss_pred ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEE
Confidence 4456888999999999999999986799999999999999998421 1344556556788999999999999999
Q ss_pred EECCCcEEEEECCCCc-------EEEEeeCCCcceEEEEc-cCCC-CCcEEEEEEcCCeEEEEeCCCCceEEEEc--CcC
Q 007411 375 ASYDKNIKYWDTETGQ-------VIRTFSTGKIPYVVKLN-PDDD-KQNILLAGMSDKKIVQWDMNTKEITQEYD--QHL 443 (604)
Q Consensus 375 ~s~Dg~I~vWD~~t~~-------~i~~~~~~~~~~~~~~~-~~~~-~~~~lvsg~~dg~I~iwD~~s~~~~~~~~--~h~ 443 (604)
++.||.|++.+++... +.+.........++.+. +... ....++.+...+.|..||+++......++ ...
T Consensus 1116 ~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~h 1195 (1431)
T KOG1240|consen 1116 STKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRH 1195 (1431)
T ss_pred EcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccc
Confidence 9999999999997621 12222222222233222 2222 22589999999999999999876555443 345
Q ss_pred CceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCC---CEEEEEE--cCCeEEEEEcCCc
Q 007411 444 GAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNT---NWLAAQS--LDNQILIYSTRER 518 (604)
Q Consensus 444 ~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g---~~l~s~s--~Dg~I~iwd~~~~ 518 (604)
|.|++++.+|.++++++|+..|.+.+||++-..++.....++..++..+..+|-. ...++++ ..+.|.+|++.++
T Consensus 1196 G~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1196 GLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred cceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence 7899999999999999999999999999999999999988888999999988743 3444444 4688999999887
Q ss_pred eeecccccccC--------c------ccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCee-----------------
Q 007411 519 FQLNKKKRFAG--------H------IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKV----------------- 567 (604)
Q Consensus 519 ~~~~~~~~~~~--------~------~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~----------------- 567 (604)
.+......-.+ . .........++...+.++.+|++|+.|+.||....+.
T Consensus 1276 ~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~ 1355 (1431)
T KOG1240|consen 1276 LRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSE 1355 (1431)
T ss_pred cceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccch
Confidence 54332221100 0 0011122234444567899999999999999643110
Q ss_pred -------------------------------EEEE--------ecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007411 568 -------------------------------FRTL--------KCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 568 -------------------------------~~~l--------~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
...+ ..|..+|+++++...+..+|++++.||.|+||-
T Consensus 1356 s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1356 SYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred hccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 0001 136778999988887778999999999999993
No 154
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.82 E-value=2.8e-16 Score=165.05 Aligned_cols=289 Identities=28% Similarity=0.564 Sum_probs=226.6
Q ss_pred cceeEEecCCCCCeEEEEEcCCCCCEEEEEEC-CCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCC-EEEEEECCCc
Q 007411 303 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGM-DTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGT-KFLTASYDKN 380 (604)
Q Consensus 303 ~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~-Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~-~L~s~s~Dg~ 380 (604)
...+..+.+|...|.++.|+|+ +.++++++. |+.+++|++ .....+..+.+|...|.+++|+|++. .+++++.|+.
T Consensus 145 ~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~ 222 (466)
T COG2319 145 GKLIRTLEGHSESVTSLAFSPD-GKLLASGSSLDGTIKLWDL-RTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGT 222 (466)
T ss_pred CeEEEEEecCcccEEEEEECCC-CCEEEecCCCCCceEEEEc-CCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCc
Confidence 4677889999999999999999 778888885 999999999 45788888999999999999999988 5556699999
Q ss_pred EEEEECCCCcEEE-EeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCce-EEEEcCcCCceeEEEEeCCCCEE
Q 007411 381 IKYWDTETGQVIR-TFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI-TQEYDQHLGAVNTITFVDSNRRF 458 (604)
Q Consensus 381 I~vWD~~t~~~i~-~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~-~~~~~~h~~~V~~i~~sp~~~~l 458 (604)
|++||...+..+. .+..+.......+.+.+ .++++++.++.+++|+++.... +..+..|...|.++.|.|++..+
T Consensus 223 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 299 (466)
T COG2319 223 IRLWDLSTGKLLRSTLSGHSDSVVSSFSPDG---SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLL 299 (466)
T ss_pred EEEEECCCCcEEeeecCCCCcceeEeECCCC---CEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEE
Confidence 9999999888877 45444333322566544 6788999999999999987664 44446789999999999988888
Q ss_pred EEEeCCCcEEEEECCCCeEEEEee-cCCCCcccEEEEcCCCCEEEEE-EcCCeEEEEEcCCceeecccccccCcccccce
Q 007411 459 VTSSDDKSLRVWEFGIPVVIKYIS-EPHMHSMPSISLHPNTNWLAAQ-SLDNQILIYSTRERFQLNKKKRFAGHIVAGYA 536 (604)
Q Consensus 459 ~sgs~Dg~I~iwdl~~~~~~~~~~-~~~~~~v~~l~~sp~g~~l~s~-s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v 536 (604)
++++.|+.+.+|++.......... ..|...+..+.+.+++..++.+ ..|+.+.+|+....... ...... ..+
T Consensus 300 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~---~~~ 373 (466)
T COG2319 300 ASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPL---KTLEGH---SNV 373 (466)
T ss_pred EEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCcee---EEecCC---ceE
Confidence 889999999999998877666654 3466678888884332556555 67889999998776511 111111 116
Q ss_pred EEEEEcCCCCEEEE-EcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007411 537 CQVNFSPDGRFVMS-GDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 537 ~~l~~spdg~~L~s-gs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
..+.+++ ...++. +..++.+.+|+............+...+..+.+.+ ++..+++++.++.+++|+
T Consensus 374 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 440 (466)
T COG2319 374 LSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSP-DGKSLASGSSDNTIRLWD 440 (466)
T ss_pred EEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECC-CCcEEEEecCCCcEEEEe
Confidence 6788888 544444 68899999999999888877776546788899998 777888899999999995
No 155
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=2.8e-19 Score=178.71 Aligned_cols=210 Identities=19% Similarity=0.312 Sum_probs=171.2
Q ss_pred ecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEcc-CCCEEEEEECCCcEEEEECC
Q 007411 309 WSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTE 387 (604)
Q Consensus 309 l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fsp-dg~~L~s~s~Dg~I~vWD~~ 387 (604)
-.+|+..|.+|.|+....++|||||.|.+|++||+ .++++..++..|.+.|.++.|+| ....|++|++|++|.+.|.+
T Consensus 239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~-~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R 317 (463)
T KOG0270|consen 239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDV-DTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCR 317 (463)
T ss_pred cccchHHHHHHHhccccceeEEecCCCceEEEEEc-CCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeecc
Confidence 34899999999999988899999999999999999 79999999999999999999999 67899999999999999998
Q ss_pred C-CcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCC-ceEEEEcCcCCceeEEEEeCCC-CEEEEEeCC
Q 007411 388 T-GQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITFVDSN-RRFVTSSDD 464 (604)
Q Consensus 388 t-~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~-~~~~~~~~h~~~V~~i~~sp~~-~~l~sgs~D 464 (604)
. +..-..++....+..+.|.+... +.++++..||.|+-+|+|+. +++.++..|.++|.+|+++... .++++++.|
T Consensus 318 ~~~~s~~~wk~~g~VEkv~w~~~se--~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d 395 (463)
T KOG0270|consen 318 DPSNSGKEWKFDGEVEKVAWDPHSE--NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTD 395 (463)
T ss_pred CccccCceEEeccceEEEEecCCCc--eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeecccc
Confidence 4 23333445556667778877654 78999999999999999986 8999999999999999999764 468899999
Q ss_pred CcEEEEECCCCeEEEEee-cCCCCcccEEEEcCCC-CEEEEEEcCCeEEEEEcCCceee
Q 007411 465 KSLRVWEFGIPVVIKYIS-EPHMHSMPSISLHPNT-NWLAAQSLDNQILIYSTRERFQL 521 (604)
Q Consensus 465 g~I~iwdl~~~~~~~~~~-~~~~~~v~~l~~sp~g-~~l~s~s~Dg~I~iwd~~~~~~~ 521 (604)
+.|++|++.......... .-..+...|+++.|+- -+++.|+..+.++|||+.+...+
T Consensus 396 ~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 396 KVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 999999986543321111 1123446677777765 46777888888999998765443
No 156
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.6e-19 Score=182.23 Aligned_cols=296 Identities=21% Similarity=0.310 Sum_probs=231.2
Q ss_pred ceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEcc--CCCEEEEEECCCcE
Q 007411 304 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCN--DGTKFLTASYDKNI 381 (604)
Q Consensus 304 ~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fsp--dg~~L~s~s~Dg~I 381 (604)
.+...|.+|.+.|..|.|... |..|++|+.|..|.+||.......+.-..+|...|....|-| +.+.+++++.||.+
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~-Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQR-GDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV 211 (559)
T ss_pred hhhhcccCCCCccceeeeccc-CceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCce
Confidence 566788999999999999999 999999999999999999655555666678999999999988 45789999999999
Q ss_pred EEEECCC-CcEEEE---eeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEE---cCcCC---ceeEEEE
Q 007411 382 KYWDTET-GQVIRT---FSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY---DQHLG---AVNTITF 451 (604)
Q Consensus 382 ~vWD~~t-~~~i~~---~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~---~~h~~---~V~~i~~ 451 (604)
++=.+.. +.+..+ .+....+..+++.|... +.|.+++.|+.+.-+|++.+.....+ ..+.. ...+|+.
T Consensus 212 r~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp--~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~ 289 (559)
T KOG1334|consen 212 RVSEILETGYVENTKRLAPHEGPVHKLAVEPDSP--KPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAV 289 (559)
T ss_pred eeeeeccccceecceecccccCccceeeecCCCC--CcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEec
Confidence 9987643 333322 23344555666666554 67999999999999999987543332 23333 5678888
Q ss_pred eCCCC-EEEEEeCCCcEEEEECCCCeE------EEEee-----cCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCce
Q 007411 452 VDSNR-RFVTSSDDKSLRVWEFGIPVV------IKYIS-----EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF 519 (604)
Q Consensus 452 sp~~~-~l~sgs~Dg~I~iwdl~~~~~------~~~~~-----~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~ 519 (604)
.|.+. .|++++.|-.+++||.+.-.. +..+. ......|++++++.++.-|++...|-.|++|.-.-+.
T Consensus 290 ~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~ 369 (559)
T KOG1334|consen 290 DPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGD 369 (559)
T ss_pred CCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecccccc
Confidence 88765 799999999999999864321 22222 1234469999999888888888889999999533221
Q ss_pred e----------ecccccccCcccccceEEEEE-cCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCC
Q 007411 520 Q----------LNKKKRFAGHIVAGYACQVNF-SPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQ 588 (604)
Q Consensus 520 ~----------~~~~~~~~~~~~~~~v~~l~~-spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~ 588 (604)
- ......++||.+...|-.+.| -|...|+++|+..|.|.||+-++++++..+.+....|+|+.=|| --
T Consensus 370 G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP-~~ 448 (559)
T KOG1334|consen 370 GSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHP-HL 448 (559)
T ss_pred CCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCC-CC
Confidence 1 222334889988888877765 68889999999999999999999999999998777999999999 45
Q ss_pred CEEEEEeCCCcEEEe
Q 007411 589 SKVATCGWDGLIKYW 603 (604)
Q Consensus 589 ~~l~tgg~DG~I~vW 603 (604)
.+|||+|.|.-||||
T Consensus 449 PvLAsSGid~DVKIW 463 (559)
T KOG1334|consen 449 PVLASSGIDHDVKIW 463 (559)
T ss_pred chhhccCCccceeee
Confidence 599999999999999
No 157
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.81 E-value=2e-16 Score=166.23 Aligned_cols=287 Identities=29% Similarity=0.550 Sum_probs=223.3
Q ss_pred EecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCC-ceeeEEE-ccCCC-EEEEEEC-CCcEEE
Q 007411 308 TWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSK-AVRDISF-CNDGT-KFLTASY-DKNIKY 383 (604)
Q Consensus 308 tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~-~V~~l~f-spdg~-~L~s~s~-Dg~I~v 383 (604)
.+.+|...|.++.|.+. +..++.++.|+.+.+|+.......+..+.++.. .+..+.+ ++++. .++..+. |+.+.+
T Consensus 60 ~~~~~~~~i~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 138 (466)
T COG2319 60 LLRGHEDSITSIAFSPD-GELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKL 138 (466)
T ss_pred eeeeccceEEEEEECCC-CcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEE
Confidence 56789999999999999 889999999999999999433326777776443 7777777 78777 5555455 999999
Q ss_pred EECCC-CcEEEEeeCC-CcceEEEEccCCCCCcEEEEEEc-CCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCC-EEE
Q 007411 384 WDTET-GQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMS-DKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNR-RFV 459 (604)
Q Consensus 384 WD~~t-~~~i~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~-dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~-~l~ 459 (604)
|+... ......+..+ .....+.+.+... .+++++. ++.+++|++..+..+..+..|...|.++.|+|++. .++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 215 (466)
T COG2319 139 WDLSTPGKLIRTLEGHSESVTSLAFSPDGK---LLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIA 215 (466)
T ss_pred EEecCCCeEEEEEecCcccEEEEEECCCCC---EEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEE
Confidence 99998 5555555444 4445677777653 6777775 99999999999889999999999999999999998 555
Q ss_pred EEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEE
Q 007411 460 TSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQV 539 (604)
Q Consensus 460 sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l 539 (604)
+++.|+.|++||...+..+......|.... ...|+|++.++++++.|+.+++|++...... ...+.+| ...+.++
T Consensus 216 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~~--~~~v~~~ 290 (466)
T COG2319 216 SGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSL--LRTLSGH--SSSVLSV 290 (466)
T ss_pred EecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcE--EEEEecC--CccEEEE
Confidence 559999999999887766663333455554 3389999999999999999999999865541 1112344 5678889
Q ss_pred EEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEe--cCCCcEEEEEEecCCCCEEEEE-eCCCcEEEeC
Q 007411 540 NFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK--CHEGVCIGCEWHPLEQSKVATC-GWDGLIKYWD 604 (604)
Q Consensus 540 ~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~--~h~~~V~~v~~sp~~~~~l~tg-g~DG~I~vWD 604 (604)
.|+|++..+++++.|+.+.+|+..+........ .|...+..+.| +.+...++.+ ..|+.+.+|+
T Consensus 291 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~ 357 (466)
T COG2319 291 AFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF-SPDGSLLVSGGSDDGTIRLWD 357 (466)
T ss_pred EECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEE-CCCCCEEEEeecCCCcEEeee
Confidence 999999999889889999999999888777776 78888999999 5232455555 6888898885
No 158
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.81 E-value=7.1e-19 Score=172.43 Aligned_cols=220 Identities=20% Similarity=0.317 Sum_probs=168.1
Q ss_pred cCCCCceeeEEEccCC--CEEEEEECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCC
Q 007411 354 MGHSKAVRDISFCNDG--TKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN 431 (604)
Q Consensus 354 ~~h~~~V~~l~fspdg--~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~ 431 (604)
..|.+.|+.+.-++-+ .+.++-+..|.|.||++... +..+.. .+...- + .
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~--l~~l~~------------------------~~~~~~-~-s 199 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPH--LNALSE------------------------PGLEVK-D-S 199 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhh--hhhhcC------------------------cccccc-c-c
Confidence 4677888888777744 45556677899999998532 111110 000000 0 3
Q ss_pred CCceEEEEcCcCCceeEEEEeCCC-CEEEEEeCCCcEEEEECCCCeEEE--EeecCCCCcccEEEEcCCC-CEEEEEEcC
Q 007411 432 TKEITQEYDQHLGAVNTITFVDSN-RRFVTSSDDKSLRVWEFGIPVVIK--YISEPHMHSMPSISLHPNT-NWLAAQSLD 507 (604)
Q Consensus 432 s~~~~~~~~~h~~~V~~i~~sp~~-~~l~sgs~Dg~I~iwdl~~~~~~~--~~~~~~~~~v~~l~~sp~g-~~l~s~s~D 507 (604)
..+++.++.+|.+.-..|+|+|-. ..|++|..-+.|++|...++.-.. .-...|..+|-.++|+|.. ..|++||.|
T Consensus 200 ~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~D 279 (440)
T KOG0302|consen 200 EFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCD 279 (440)
T ss_pred ccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecC
Confidence 345788888999999999999942 358888888899999987753221 1123588999999999974 689999999
Q ss_pred CeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC---CeeEEEEecCCCcEEEEEEe
Q 007411 508 NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS---CKVFRTLKCHEGVCIGCEWH 584 (604)
Q Consensus 508 g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t---~~~~~~l~~h~~~V~~v~~s 584 (604)
|+|+|||++.+........ +.| .+-|+.|.|+.+-.+|++|+.||.+.|||++. ++++..++-|..+|+++.|+
T Consensus 280 gsIrIWDiRs~~~~~~~~~-kAh--~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~ 356 (440)
T KOG0302|consen 280 GSIRIWDIRSGPKKAAVST-KAH--NSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWH 356 (440)
T ss_pred ceEEEEEecCCCccceeEe-ecc--CCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEec
Confidence 9999999998743322222 444 45788899999988999999999999999964 67899999999999999999
Q ss_pred cCCCCEEEEEeCCCcEEEeC
Q 007411 585 PLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 585 p~~~~~l~tgg~DG~I~vWD 604 (604)
|.+.+.|+++|.|..|.|||
T Consensus 357 p~e~s~iaasg~D~QitiWD 376 (440)
T KOG0302|consen 357 PHEDSVIAASGEDNQITIWD 376 (440)
T ss_pred cccCceEEeccCCCcEEEEE
Confidence 99999999999999999998
No 159
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=1.2e-19 Score=199.78 Aligned_cols=279 Identities=19% Similarity=0.328 Sum_probs=206.7
Q ss_pred EEEEcCCCCCEEEEE----------ECCCcEEEEecCCCC-----eeeEEecCCCCceeeEEEccCCCE----EEEEECC
Q 007411 318 AIRFFPKYGHLILSA----------GMDTKVKIWDVVNSG-----KCMRTYMGHSKAVRDISFCNDGTK----FLTASYD 378 (604)
Q Consensus 318 ~l~fsp~~g~~L~sg----------s~Dg~I~IWd~~~~~-----~~~~~~~~h~~~V~~l~fspdg~~----L~s~s~D 378 (604)
.++|+|.+..++++| +.+.++-||.+.... +.+..+ .-....+.++|.+.|.. |+.|..|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~-~s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSL-QSSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccc-cccccceeeeecccCCCccceeeccccC
Confidence 467888854466665 335566777652111 122222 23456789999997665 8888999
Q ss_pred CcEEEEECCC---Cc---EEEEeeC-CCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEc--CcCCceeEE
Q 007411 379 KNIKYWDTET---GQ---VIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYD--QHLGAVNTI 449 (604)
Q Consensus 379 g~I~vWD~~t---~~---~i~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~--~h~~~V~~i 449 (604)
|.|.+||... +. .+.+... ...+..+.|++ ..++++++|+.+|.|.|||+...+.-..+. ...+.|.++
T Consensus 90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~--~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~l 167 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNP--FQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCL 167 (1049)
T ss_pred CceEEecchhhccCcchHHHhhhcccCCceeeeeccc--cCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEe
Confidence 9999999865 22 2222222 22333445554 555899999999999999998765444432 245789999
Q ss_pred EEeCC-CCEEEEEeCCCcEEEEECCCCeEEEEeecCCC-CcccEEEEcCCC-CEEEEEEcC---CeEEEEEcCCceeecc
Q 007411 450 TFVDS-NRRFVTSSDDKSLRVWEFGIPVVIKYISEPHM-HSMPSISLHPNT-NWLAAQSLD---NQILIYSTRERFQLNK 523 (604)
Q Consensus 450 ~~sp~-~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~-~~v~~l~~sp~g-~~l~s~s~D---g~I~iwd~~~~~~~~~ 523 (604)
+|+.. ...|++++.+|.+.|||++..+.+..+..... ..+..+.|||+. ..|++++.| -.|.+||+|... ..
T Consensus 168 sWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as--sP 245 (1049)
T KOG0307|consen 168 SWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS--SP 245 (1049)
T ss_pred ccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC--Cc
Confidence 99865 44688899999999999999887777654332 447789999986 456666655 459999988643 33
Q ss_pred cccccCcccccceEEEEEcCCC-CEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEE
Q 007411 524 KKRFAGHIVAGYACQVNFSPDG-RFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKY 602 (604)
Q Consensus 524 ~~~~~~~~~~~~v~~l~~spdg-~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~v 602 (604)
.+.+.+| ...|.++.|++.+ ++|++++.|++|.+|+..+++.+..+......+..+.|+|.+..+++.++.||.|.|
T Consensus 246 ~k~~~~H--~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I 323 (1049)
T KOG0307|consen 246 LKILEGH--QRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISI 323 (1049)
T ss_pred hhhhccc--ccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceee
Confidence 4556777 5668899999966 899999999999999999999999999888899999999988889999999999998
Q ss_pred e
Q 007411 603 W 603 (604)
Q Consensus 603 W 603 (604)
+
T Consensus 324 ~ 324 (1049)
T KOG0307|consen 324 Y 324 (1049)
T ss_pred e
Confidence 7
No 160
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.80 E-value=2.9e-18 Score=173.03 Aligned_cols=261 Identities=13% Similarity=0.150 Sum_probs=198.1
Q ss_pred ECCCcEEEEecCCCCeeeEEecCCC--CceeeEEEccCCCEEEEE--ECCCcEEEEECCCC--c-EEEEeeCCCcceEEE
Q 007411 333 GMDTKVKIWDVVNSGKCMRTYMGHS--KAVRDISFCNDGTKFLTA--SYDKNIKYWDTETG--Q-VIRTFSTGKIPYVVK 405 (604)
Q Consensus 333 s~Dg~I~IWd~~~~~~~~~~~~~h~--~~V~~l~fspdg~~L~s~--s~Dg~I~vWD~~t~--~-~i~~~~~~~~~~~~~ 405 (604)
+...+++|||+. .......+..|+ ..+.+++|+.... |+++ +.|..|++|.-... . ++.....+....|+.
T Consensus 9 S~gd~~kl~D~s-~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~ 86 (673)
T KOG4378|consen 9 STGDKTKLSDFS-DLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVA 86 (673)
T ss_pred ccCCceEEeecc-cccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccchHHHHh
Confidence 334579999993 333333333332 2388999987654 4444 45778899965432 1 222222333444554
Q ss_pred EccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCC
Q 007411 406 LNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPH 485 (604)
Q Consensus 406 ~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~ 485 (604)
+.... .++++|+..+.|.|||++...+.+.+..|...|+++.++-...+|++++..|.|.|..+.++.....+..+.
T Consensus 87 ~~s~S---~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~s 163 (673)
T KOG4378|consen 87 CASQS---LYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDS 163 (673)
T ss_pred hhhcc---eeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCC
Confidence 44332 689999999999999999877888889999999999999999999999999999999999988887777777
Q ss_pred CCcccEEEEcCCCCE-EEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCC-CCEEEEEcCCCcEEEEeCC
Q 007411 486 MHSMPSISLHPNTNW-LAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPD-GRFVMSGDGEGKCWFWDWK 563 (604)
Q Consensus 486 ~~~v~~l~~sp~g~~-l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spd-g~~L~sgs~dG~I~iwd~~ 563 (604)
...+.-+.++|..++ |.+++.+|.|.+||+....... .....| ..+...|+|+|. ..+|++.+.|.+|.+||+.
T Consensus 164 gqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~--~~~~~H--sAP~~gicfspsne~l~vsVG~Dkki~~yD~~ 239 (673)
T KOG4378|consen 164 GQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIF--HASEAH--SAPCRGICFSPSNEALLVSVGYDKKINIYDIR 239 (673)
T ss_pred CCeEEEeecccccceeeEeeccCCeEEEEeccCCCccc--chhhhc--cCCcCcceecCCccceEEEecccceEEEeecc
Confidence 778889999998765 5667888999999998755432 222334 566778999995 5577889999999999999
Q ss_pred CCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007411 564 SCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 564 t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
+.+....+. ...+...++|.+ ++.+|+.|...|.|..||
T Consensus 240 s~~s~~~l~-y~~Plstvaf~~-~G~~L~aG~s~G~~i~YD 278 (673)
T KOG4378|consen 240 SQASTDRLT-YSHPLSTVAFSE-CGTYLCAGNSKGELIAYD 278 (673)
T ss_pred cccccceee-ecCCcceeeecC-CceEEEeecCCceEEEEe
Confidence 887777775 456789999999 788999999999999987
No 161
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.80 E-value=1.3e-17 Score=165.28 Aligned_cols=282 Identities=20% Similarity=0.329 Sum_probs=200.9
Q ss_pred CCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCC---C-----eeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEE
Q 007411 313 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNS---G-----KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYW 384 (604)
Q Consensus 313 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~---~-----~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vW 384 (604)
..+|..+.|.++....|+||+.|..|+||-+... + +.+..+..|...|+++.|+|+|.+|++|+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 4679999999986669999999999999987321 1 3455678899999999999999999999999999999
Q ss_pred ECC--------C-----C---cEEEEee-CCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCcee
Q 007411 385 DTE--------T-----G---QVIRTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVN 447 (604)
Q Consensus 385 D~~--------t-----~---~~i~~~~-~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~ 447 (604)
-.. + . .....+. ....++-++|.+++ .++++|+.|+.+++||+..|.....+..|..-|.
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~---~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvq 169 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS---NFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQ 169 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC---ceeeeeeccceEEEEEeccceeEeeccccccccc
Confidence 765 2 0 1111121 22445666777654 7899999999999999999999999999999999
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEee---------c---------CC----CCcccEEEEcCCCCEEEEEE
Q 007411 448 TITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYIS---------E---------PH----MHSMPSISLHPNTNWLAAQS 505 (604)
Q Consensus 448 ~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~---------~---------~~----~~~v~~l~~sp~g~~l~s~s 505 (604)
.++|.|-++++++-+.|...+.+.+.....+.... . -| ..-...++|+|+|.+|++.+
T Consensus 170 gvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPa 249 (434)
T KOG1009|consen 170 GVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPA 249 (434)
T ss_pred eeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccc
Confidence 99999999999999999988888776544333221 0 01 11245688999999988764
Q ss_pred c----CC-----eEEEEEcCCceeecccccccCcccccceEEEEEcC-----------------CCCEEEEEcCCCcEEE
Q 007411 506 L----DN-----QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP-----------------DGRFVMSGDGEGKCWF 559 (604)
Q Consensus 506 ~----Dg-----~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-----------------dg~~L~sgs~dG~I~i 559 (604)
. .+ ..++|+-.... .....+.+. ..++..+.|+| --+++++......|+|
T Consensus 250 g~~~~g~~~~~n~tYvfsrk~l~--rP~~~lp~~--~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyv 325 (434)
T KOG1009|consen 250 GLFKVGGGVFRNTSYVFSRKDLK--RPAARLPSP--KKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYV 325 (434)
T ss_pred ceeeeCCceeeceeEeecccccc--CceeecCCC--CcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEE
Confidence 2 22 23444322111 111111111 12222333332 1223444444568999
Q ss_pred EeCCCCeeEEEEe-cCCCcEEEEEEecCCCCEEEEEeCCCcEEE
Q 007411 560 WDWKSCKVFRTLK-CHEGVCIGCEWHPLEQSKVATCGWDGLIKY 602 (604)
Q Consensus 560 wd~~t~~~~~~l~-~h~~~V~~v~~sp~~~~~l~tgg~DG~I~v 602 (604)
||.++..++.... -|-..|+.++|++ ++..|+..+.||...+
T Consensus 326 ydtq~~~P~~~v~nihy~~iTDiaws~-dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 326 YDTQTLEPLAVVDNIHYSAITDIAWSD-DGSVLLVSSTDGFCSL 368 (434)
T ss_pred eccccccceEEEeeeeeeeecceeecC-CCcEEEEeccCCceEE
Confidence 9999988877665 5888999999999 7889999999997543
No 162
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=5.6e-17 Score=150.71 Aligned_cols=274 Identities=14% Similarity=0.230 Sum_probs=190.1
Q ss_pred CeEEEEEcCCCCCEEEEEECCCcEEEEecCC---------CCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEE
Q 007411 315 GVSAIRFFPKYGHLILSAGMDTKVKIWDVVN---------SGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWD 385 (604)
Q Consensus 315 ~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~---------~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD 385 (604)
.|.+-+++|. +++|+.|+.+|.|.+..+.. ....+...++|.++|+.++|. ..+|++|+ ||.|+-|.
T Consensus 12 tvf~qa~sp~-~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 12 TVFAQAISPS-KQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHhhCCc-ceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence 3666678999 99999999999999998831 224556678999999999998 34677776 59999998
Q ss_pred CCCCcE------EEEeeC------CCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeC
Q 007411 386 TETGQV------IRTFST------GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVD 453 (604)
Q Consensus 386 ~~t~~~------i~~~~~------~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp 453 (604)
.+.... +..... -..+.+.++..++..+. ++.++.|+.++.||+++|+..+++++|..-|.++.--.
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enS-i~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~ 166 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENS-ILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRN 166 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCc-EEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecc
Confidence 764322 111111 11222333333323334 44444899999999999999999999999999999977
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCc-------ccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeccccc
Q 007411 454 SNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHS-------MPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKR 526 (604)
Q Consensus 454 ~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~-------v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~ 526 (604)
.+..+++|+.||++|+||+++.+.+..+....... -.-.++.-+..+|++|+ ...+.+|.++.......+ .
T Consensus 167 ~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg-Gp~lslwhLrsse~t~vf-p 244 (325)
T KOG0649|consen 167 ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG-GPKLSLWHLRSSESTCVF-P 244 (325)
T ss_pred cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecC-CCceeEEeccCCCceEEE-e
Confidence 77789999999999999999999988875321111 11144455677887765 567999999886554322 2
Q ss_pred ccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEe
Q 007411 527 FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 603 (604)
Q Consensus 527 ~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vW 603 (604)
+. ..+..+.|- ...+++++....|.-|.+ +|.+-..+......+.+..|+..--.+|-.+|....+.|+
T Consensus 245 ip-----a~v~~v~F~--~d~vl~~G~g~~v~~~~l-~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 245 IP-----ARVHLVDFV--DDCVLIGGEGNHVQSYTL-NGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred cc-----cceeEeeee--cceEEEeccccceeeeee-ccEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 33 334456774 447788887788988875 4555555555555677888876333455556666666654
No 163
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=1.5e-18 Score=178.14 Aligned_cols=261 Identities=18% Similarity=0.306 Sum_probs=191.7
Q ss_pred eeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCC-------CCeeeEEecCCCCceeeEEEccCCCEEEEEEC
Q 007411 305 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN-------SGKCMRTYMGHSKAVRDISFCNDGTKFLTASY 377 (604)
Q Consensus 305 ~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~-------~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~ 377 (604)
+-.++..|...|+.+.|.|. ...|++|+.||+|++|++.. .-+++.+|.+|.++|.|+++.+++..+++|+.
T Consensus 286 ik~tl~s~~d~ir~l~~~~s-ep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~ 364 (577)
T KOG0642|consen 286 IKFTLRSHDDCIRALAFHPS-EPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGI 364 (577)
T ss_pred eeeeeecchhhhhhhhcCCC-CCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeecc
Confidence 34488899999999999998 88999999999999999921 23678899999999999999999999999999
Q ss_pred CCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCE
Q 007411 378 DKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRR 457 (604)
Q Consensus 378 Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~ 457 (604)
||+|+.|++.... .+++. +|.. .+...+.+|.+.|..+.+++....
T Consensus 365 Dg~I~~w~~p~n~----------------dp~ds----------------~dp~--vl~~~l~Ghtdavw~l~~s~~~~~ 410 (577)
T KOG0642|consen 365 DGTIRCWNLPPNQ----------------DPDDS----------------YDPS--VLSGTLLGHTDAVWLLALSSTKDR 410 (577)
T ss_pred CceeeeeccCCCC----------------Ccccc----------------cCcc--hhccceeccccceeeeeecccccc
Confidence 9999999875211 01110 1111 123456789999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEeecCCCC-cccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeccccc-----ccCcc
Q 007411 458 FVTSSDDKSLRVWEFGIPVVIKYISEPHMH-SMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKR-----FAGHI 531 (604)
Q Consensus 458 l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~-~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~-----~~~~~ 531 (604)
|++++.||++++|+.....+ ..+..+..+ ...++.+-... ++....+.....+++.+......... ..+..
T Consensus 411 Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~--~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~ 487 (577)
T KOG0642|consen 411 LLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSR--PAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPR 487 (577)
T ss_pred eeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccch--hHhhhhhcccccccchhhhhhhheeeccccCCCccc
Confidence 99999999999999876655 223222222 22334443222 11111222333333322211111121 22222
Q ss_pred cccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007411 532 VAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 532 ~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
....+..+.++|.+.+.+++..|+.|+++|..+++++....+|...++++++.| ++-+|++++.||.|++|.
T Consensus 488 ~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~-ng~~l~s~s~d~sv~l~k 559 (577)
T KOG0642|consen 488 RYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDP-NGPYLMSGSHDGSVRLWK 559 (577)
T ss_pred ccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecC-CCceEEeecCCceeehhh
Confidence 224466788999999999999999999999999999999999999999999999 788999999999999984
No 164
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=5.1e-19 Score=194.96 Aligned_cols=248 Identities=17% Similarity=0.281 Sum_probs=195.1
Q ss_pred CCeEEEEEcCCCCC---EEEEEECCCcEEEEecCC-----CCeeeEEecCCCCceeeEEEccC-CCEEEEEECCCcEEEE
Q 007411 314 KGVSAIRFFPKYGH---LILSAGMDTKVKIWDVVN-----SGKCMRTYMGHSKAVRDISFCND-GTKFLTASYDKNIKYW 384 (604)
Q Consensus 314 ~~V~~l~fsp~~g~---~L~sgs~Dg~I~IWd~~~-----~~~~~~~~~~h~~~V~~l~fspd-g~~L~s~s~Dg~I~vW 384 (604)
...+.|+|.+.+.+ +|+.|..||.|.+||... ....+.++..|.+.|+.+.|++. +++|++|+.||.|.||
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 45788999987444 599999999999999843 12456778899999999999995 5599999999999999
Q ss_pred ECCCCcEEEEeeC-CCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCC--ceeEEEEeCCCC-EEEE
Q 007411 385 DTETGQVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLG--AVNTITFVDSNR-RFVT 460 (604)
Q Consensus 385 D~~t~~~i~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~--~V~~i~~sp~~~-~l~s 460 (604)
|+..-+.-..... .....+.++.++...+++|++++.+|.+.|||++..+.+..+..+.+ .+..+.|+|++. .+++
T Consensus 145 Dlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~ 224 (1049)
T KOG0307|consen 145 DLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLV 224 (1049)
T ss_pred ccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeee
Confidence 9987554444421 12223444455556668999999999999999999988877766655 478899999864 4666
Q ss_pred EeCCC---cEEEEECCCCeEEEEeecCCCCcccEEEEcCCC-CEEEEEEcCCeEEEEEcCCceeecccccccCcccccce
Q 007411 461 SSDDK---SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNT-NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYA 536 (604)
Q Consensus 461 gs~Dg---~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g-~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v 536 (604)
++.|. .|.+||+|.......+...|...|.++.|++.+ .+|++++.|+.|.+|+..++..+..+.. ...++
T Consensus 225 As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~-----~~nW~ 299 (1049)
T KOG0307|consen 225 ASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA-----QGNWC 299 (1049)
T ss_pred ecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC-----CCcce
Confidence 65543 699999997765555557899999999999976 8999999999999999999876654433 24678
Q ss_pred EEEEEcCCCC-EEEEEcCCCcEEEEeCCCCe
Q 007411 537 CQVNFSPDGR-FVMSGDGEGKCWFWDWKSCK 566 (604)
Q Consensus 537 ~~l~~spdg~-~L~sgs~dG~I~iwd~~t~~ 566 (604)
..+.|+|... .+++++-+|.|-|+.+.++.
T Consensus 300 fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 300 FDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 8999999665 77888899999999987654
No 165
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.78 E-value=6.7e-18 Score=175.35 Aligned_cols=252 Identities=18% Similarity=0.271 Sum_probs=177.0
Q ss_pred eEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEE--ecCCCCceeeEEEcc-CCCEEEEEECCCcEE
Q 007411 306 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRT--YMGHSKAVRDISFCN-DGTKFLTASYDKNIK 382 (604)
Q Consensus 306 i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~--~~~h~~~V~~l~fsp-dg~~L~s~s~Dg~I~ 382 (604)
+..+..|...|..+.|-|. ..+|++++.|.++++||+ ....++.. +.+|...|.+++|.+ +...|++|+.||.|.
T Consensus 93 lk~~~aH~nAifDl~wapg-e~~lVsasGDsT~r~Wdv-k~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~il 170 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAPG-ESLLVSASGDSTIRPWDV-KTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEIL 170 (720)
T ss_pred hcccccccceeEeeccCCC-ceeEEEccCCceeeeeee-ccceeecceeecccccccchhhhccCCCcceeeccCCCcEE
Confidence 5667789999999999995 899999999999999999 67777665 899999999999999 567889999999999
Q ss_pred EEECCCCcE--------------------EE----EeeC----CCcc-eEEEEccCCCCCcEEEEEEc-CCeEEEEeCCC
Q 007411 383 YWDTETGQV--------------------IR----TFST----GKIP-YVVKLNPDDDKQNILLAGMS-DKKIVQWDMNT 432 (604)
Q Consensus 383 vWD~~t~~~--------------------i~----~~~~----~~~~-~~~~~~~~~~~~~~lvsg~~-dg~I~iwD~~s 432 (604)
|||++-... .. .... ...+ ..+......++ +.|++++. |+.|++||++.
T Consensus 171 lWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe-~tlaSaga~D~~iKVWDLRk 249 (720)
T KOG0321|consen 171 LWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDE-STLASAGAADSTIKVWDLRK 249 (720)
T ss_pred EEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEecc-ceeeeccCCCcceEEEeecc
Confidence 999863320 00 0000 0011 11111111122 45666655 99999999987
Q ss_pred CceEE--------EEcCc---CCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEE-EeecCC--CCcccEEEEcCCC
Q 007411 433 KEITQ--------EYDQH---LGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIK-YISEPH--MHSMPSISLHPNT 498 (604)
Q Consensus 433 ~~~~~--------~~~~h---~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~-~~~~~~--~~~v~~l~~sp~g 498 (604)
..... .+..| .-.+.++.....|.+|++.+.|++|++|++.....-. ....++ ......-..+|++
T Consensus 250 ~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~ 329 (720)
T KOG0321|consen 250 NYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDD 329 (720)
T ss_pred cccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCC
Confidence 64322 22223 3457888888888998888889999999997542211 111111 1112233568999
Q ss_pred CEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcC--CCCEEEEEcCCCcEEEEeCCCC
Q 007411 499 NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP--DGRFVMSGDGEGKCWFWDWKSC 565 (604)
Q Consensus 499 ~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp--dg~~L~sgs~dG~I~iwd~~t~ 565 (604)
.+|++|+.|...++|.+.+... ....+.+| ...|++++|.| .+. +++++.|.++++|++..+
T Consensus 330 ~~l~SgSsd~~ayiw~vs~~e~--~~~~l~Gh--t~eVt~V~w~pS~~t~-v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 330 CSLLSGSSDEQAYIWVVSSPEA--PPALLLGH--TREVTTVRWLPSATTP-VATCSDDFRVKIWRLSNG 393 (720)
T ss_pred ceEeccCCCcceeeeeecCccC--ChhhhhCc--ceEEEEEeeccccCCC-ceeeccCcceEEEeccCc
Confidence 9999999999999999876533 34556677 45577788876 344 455599999999998643
No 166
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.78 E-value=2.4e-17 Score=156.99 Aligned_cols=209 Identities=17% Similarity=0.278 Sum_probs=161.7
Q ss_pred cCCCCceeeEEEcc-CCCEEEEEECCCcEEEEECCCCc----------EEEEee----CCC--cceEEEEccCCCCCcEE
Q 007411 354 MGHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTETGQ----------VIRTFS----TGK--IPYVVKLNPDDDKQNIL 416 (604)
Q Consensus 354 ~~h~~~V~~l~fsp-dg~~L~s~s~Dg~I~vWD~~t~~----------~i~~~~----~~~--~~~~~~~~~~~~~~~~l 416 (604)
..|.+.|+++...+ .|+++++|+.||.|.|||++... .+..+. ..+ .+..+.|.|.+. .+|
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~Dt--GmF 117 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDT--GMF 117 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecC--cee
Confidence 35889999999988 79999999999999999997543 111111 111 233455666544 689
Q ss_pred EEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCC---CCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEE
Q 007411 417 LAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS---NRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSIS 493 (604)
Q Consensus 417 vsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~---~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~ 493 (604)
.+++.|..+++||.++.+....|. ..+.|.+-+++|- .-++++|..+-.|++.|+..+.....+. +|...|.++.
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls-GHr~~vlaV~ 195 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS-GHRDGVLAVE 195 (397)
T ss_pred ecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeec-cccCceEEEE
Confidence 999999999999999998877775 5677777777774 3467888889999999999998888775 6999999999
Q ss_pred EcCCCCE-EEEEEcCCeEEEEEcCCc-eeecc--------ccccc-CcccccceEEEEEcCCCCEEEEEcCCCcEEEEeC
Q 007411 494 LHPNTNW-LAAQSLDNQILIYSTRER-FQLNK--------KKRFA-GHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 562 (604)
Q Consensus 494 ~sp~g~~-l~s~s~Dg~I~iwd~~~~-~~~~~--------~~~~~-~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~ 562 (604)
|+|...+ |++|+.||.|++||++.. .++.. ....+ ...+.+.+..++|+.+|.++++.+.|.++++|+.
T Consensus 196 Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~ 275 (397)
T KOG4283|consen 196 WSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNM 275 (397)
T ss_pred eccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeec
Confidence 9998765 678999999999999753 11111 11111 1223577899999999999999999999999998
Q ss_pred CCCe
Q 007411 563 KSCK 566 (604)
Q Consensus 563 ~t~~ 566 (604)
.+|+
T Consensus 276 ~~G~ 279 (397)
T KOG4283|consen 276 ESGR 279 (397)
T ss_pred ccCc
Confidence 7765
No 167
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.77 E-value=1.7e-17 Score=163.64 Aligned_cols=208 Identities=22% Similarity=0.332 Sum_probs=166.7
Q ss_pred EecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCC------eeeEEecCCCCceeeEEEccC-CCEEEEEECCCc
Q 007411 308 TWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG------KCMRTYMGHSKAVRDISFCND-GTKFLTASYDKN 380 (604)
Q Consensus 308 tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~------~~~~~~~~h~~~V~~l~fspd-g~~L~s~s~Dg~ 380 (604)
.+.||+++|..++|+|.+.+.|||||.|.+|.||.+...+ +++..+.+|...|-.++|+|. .+.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 4679999999999999989999999999999999995433 567788999999999999994 568899999999
Q ss_pred EEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCc-eeEEEEeCCCCEEE
Q 007411 381 IKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGA-VNTITFVDSNRRFV 459 (604)
Q Consensus 381 I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~-V~~i~~sp~~~~l~ 459 (604)
|.+|++.+|+.+.++.....++.+.|+.++ .+|++.+.|++|++||.++++++.+-.+|.+. -..+.|..++..+.
T Consensus 156 v~iWnv~tgeali~l~hpd~i~S~sfn~dG---s~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~t 232 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLDHPDMVYSMSFNRDG---SLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFT 232 (472)
T ss_pred EEEEeccCCceeeecCCCCeEEEEEeccCC---ceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceee
Confidence 999999999999988866677777777755 68999999999999999999999998888764 45566777887444
Q ss_pred EEe---CCCcEEEEECCCCe-EEEEeecCCCCcccEEEEcCCCCEEEEEE-cCCeEEEEEcCCc
Q 007411 460 TSS---DDKSLRVWEFGIPV-VIKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRER 518 (604)
Q Consensus 460 sgs---~Dg~I~iwdl~~~~-~~~~~~~~~~~~v~~l~~sp~g~~l~s~s-~Dg~I~iwd~~~~ 518 (604)
+|- .+..+.+||-.... ++..........|.---|.++.+.+..++ .|+.|+.|.+.+.
T Consensus 233 TGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 233 TGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred eccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 442 46789999975432 22222223455566667788888765554 6899999998654
No 168
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.76 E-value=6.2e-17 Score=153.83 Aligned_cols=259 Identities=19% Similarity=0.334 Sum_probs=192.7
Q ss_pred CCcEEEEecCCCCe--eeEEecCCCCceeeEEEccC-CCEEEEEECC-------CcEEEEECCCC---------cEEEEe
Q 007411 335 DTKVKIWDVVNSGK--CMRTYMGHSKAVRDISFCND-GTKFLTASYD-------KNIKYWDTETG---------QVIRTF 395 (604)
Q Consensus 335 Dg~I~IWd~~~~~~--~~~~~~~h~~~V~~l~fspd-g~~L~s~s~D-------g~I~vWD~~t~---------~~i~~~ 395 (604)
|+.|.+-.+...+. ....|..|.+.|..|+-+|- .+.|+++..+ -.+.||.+... +++..+
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L 118 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL 118 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence 56777777643332 22456778899999999994 4555555442 24779988542 233344
Q ss_pred eCC--CcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCce-EEEEc-----CcCCceeEEEEeC--CCCEEEEEeCCC
Q 007411 396 STG--KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI-TQEYD-----QHLGAVNTITFVD--SNRRFVTSSDDK 465 (604)
Q Consensus 396 ~~~--~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~-~~~~~-----~h~~~V~~i~~sp--~~~~l~sgs~Dg 465 (604)
... ....|+.|.|+.+ -+++..|..|.+|++..+.. +..+. .|....++-+|+| +++.+++.+ |+
T Consensus 119 dteavg~i~cvew~Pns~----klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~ 193 (370)
T KOG1007|consen 119 DTEAVGKINCVEWEPNSD----KLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DS 193 (370)
T ss_pred CHHHhCceeeEEEcCCCC----eeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CC
Confidence 322 2457888888554 23344499999999987654 44332 2455678888998 566776665 79
Q ss_pred cEEEEECCCCeEEEEeecCCCCcccEEEEcCCCC-EEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCC
Q 007411 466 SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTN-WLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPD 544 (604)
Q Consensus 466 ~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~-~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spd 544 (604)
++..||+++......|...|...+..+.|+|+.. +|++|+.||.|+|||.+... .....+.+| ..++.++.|+|.
T Consensus 194 tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk--~pv~el~~H--sHWvW~VRfn~~ 269 (370)
T KOG1007|consen 194 TLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK--FPVQELPGH--SHWVWAVRFNPE 269 (370)
T ss_pred cEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC--ccccccCCC--ceEEEEEEecCc
Confidence 9999999999999999999999999999999865 67888999999999998643 334566667 678999999994
Q ss_pred -CCEEEEEcCCCcEEEEeCCCC-----------------------------eeEEEEecCCCcEEEEEEecCCCCEEEEE
Q 007411 545 -GRFVMSGDGEGKCWFWDWKSC-----------------------------KVFRTLKCHEGVCIGCEWHPLEQSKVATC 594 (604)
Q Consensus 545 -g~~L~sgs~dG~I~iwd~~t~-----------------------------~~~~~l~~h~~~V~~v~~sp~~~~~l~tg 594 (604)
.++|++|++|..|.+|-..+- ..+.++..|...|.+++|+..+.-++++-
T Consensus 270 hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASL 349 (370)
T KOG1007|consen 270 HDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASL 349 (370)
T ss_pred cceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEe
Confidence 678889999999999964321 13456778999999999999889899999
Q ss_pred eCCCcEEE
Q 007411 595 GWDGLIKY 602 (604)
Q Consensus 595 g~DG~I~v 602 (604)
+.||.+.|
T Consensus 350 SYDGRviI 357 (370)
T KOG1007|consen 350 SYDGRVII 357 (370)
T ss_pred ccCceEEe
Confidence 99999876
No 169
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.76 E-value=9.9e-18 Score=161.90 Aligned_cols=247 Identities=20% Similarity=0.363 Sum_probs=187.8
Q ss_pred CCCCeEEEEEcCC---CCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccC-CCEEEEEECCCcEEEEECC
Q 007411 312 HTKGVSAIRFFPK---YGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCND-GTKFLTASYDKNIKYWDTE 387 (604)
Q Consensus 312 H~~~V~~l~fsp~---~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspd-g~~L~s~s~Dg~I~vWD~~ 387 (604)
|......++|+-+ +..+||.|+.-|.|+|.|+ ..+++...+.+|...|+.|.|+|+ .++++++|.|..|++|+++
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~-~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDV-VSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEec-chhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 6677777888754 2458999999999999999 789999999999999999999994 5789999999999999999
Q ss_pred CCcEEEEeeC--CCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEE----------------------------
Q 007411 388 TGQVIRTFST--GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQ---------------------------- 437 (604)
Q Consensus 388 t~~~i~~~~~--~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~---------------------------- 437 (604)
+..++..|.. +|...++.+..+.+. ..|++++.|.+|.+|++...+...
T Consensus 167 ~~~Cv~VfGG~egHrdeVLSvD~~~~g-d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fs 245 (385)
T KOG1034|consen 167 TDVCVAVFGGVEGHRDEVLSVDFSLDG-DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFS 245 (385)
T ss_pred CCeEEEEecccccccCcEEEEEEcCCC-CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccc
Confidence 9999999864 455555555444433 489999999999999998432100
Q ss_pred EEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECC-CCeEEEEee------------cCCCCcccE--EEEcCCCCEEE
Q 007411 438 EYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFG-IPVVIKYIS------------EPHMHSMPS--ISLHPNTNWLA 502 (604)
Q Consensus 438 ~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~-~~~~~~~~~------------~~~~~~v~~--l~~sp~g~~l~ 502 (604)
+-.-|...|-|+.|. |+++++-|.++.|..|... -...+..+. .-.+..|.- .++.|-++.||
T Consensus 246 t~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la 323 (385)
T KOG1034|consen 246 TTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLA 323 (385)
T ss_pred ccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHh
Confidence 112366667777775 5789999999999999872 111111110 112223333 45567789999
Q ss_pred EEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCC
Q 007411 503 AQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 563 (604)
Q Consensus 503 s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~ 563 (604)
.|...|.|.+||++..... ...++..+.....|.+.+||.||.+|+..+.|+.|.-||..
T Consensus 324 ~gnq~g~v~vwdL~~~ep~-~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 324 LGNQSGKVYVWDLDNNEPP-KCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred hccCCCcEEEEECCCCCCc-cCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 9999999999999876554 33444445556778999999999999999999999999964
No 170
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=7.2e-17 Score=155.07 Aligned_cols=203 Identities=16% Similarity=0.259 Sum_probs=159.8
Q ss_pred EeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECC
Q 007411 394 TFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFG 473 (604)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~ 473 (604)
++.... ..|+.|++.+ .++++|+.||.|.+||+.+..+-..+.+|..+|++++|+++|+.|+++|.|..|.+||+.
T Consensus 20 tld~~~-a~~~~Fs~~G---~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~ 95 (405)
T KOG1273|consen 20 TLDNPL-AECCQFSRWG---DYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLL 95 (405)
T ss_pred eccCCc-cceEEeccCc---ceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEecc
Confidence 344444 6678888765 689999999999999999999888999999999999999999999999999999999999
Q ss_pred CCeEEEEeecCCCCcccEEEEcCCC-CEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEc
Q 007411 474 IPVVIKYISEPHMHSMPSISLHPNT-NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD 552 (604)
Q Consensus 474 ~~~~~~~~~~~~~~~v~~l~~sp~g-~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs 552 (604)
.+.+.+.+. ...+|..+.|+|.. +.+++.-.+..-.+.++..+........-.+.. .....+..|.+.|+||++|.
T Consensus 96 ~gs~l~rir--f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dl-n~sas~~~fdr~g~yIitGt 172 (405)
T KOG1273|consen 96 KGSPLKRIR--FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDL-NSSASHGVFDRRGKYIITGT 172 (405)
T ss_pred CCCceeEEE--ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccc-ccccccccccCCCCEEEEec
Confidence 999988885 57789999999964 333444444445555554322111111111111 12223346899999999999
Q ss_pred CCCcEEEEeCCCCeeEEEEecCC-CcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007411 553 GEGKCWFWDWKSCKVFRTLKCHE-GVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 553 ~dG~I~iwd~~t~~~~~~l~~h~-~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
+.|.+.++|..+.+++..++... ..|..+.++. .+..|+.-+.|..||.|+
T Consensus 173 sKGkllv~~a~t~e~vas~rits~~~IK~I~~s~-~g~~liiNtsDRvIR~ye 224 (405)
T KOG1273|consen 173 SKGKLLVYDAETLECVASFRITSVQAIKQIIVSR-KGRFLIINTSDRVIRTYE 224 (405)
T ss_pred CcceEEEEecchheeeeeeeechheeeeEEEEec-cCcEEEEecCCceEEEEe
Confidence 99999999999999999998766 7889999988 788999999999999985
No 171
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=9.7e-17 Score=174.65 Aligned_cols=283 Identities=17% Similarity=0.261 Sum_probs=200.3
Q ss_pred CCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCC---CCceeeEEEcc--CCCEEEEEECCCcEEEEEC
Q 007411 312 HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGH---SKAVRDISFCN--DGTKFLTASYDKNIKYWDT 386 (604)
Q Consensus 312 H~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h---~~~V~~l~fsp--dg~~L~s~s~Dg~I~vWD~ 386 (604)
....-..+.|+|- ...++++...-.|+|||. +.++++..|..+ ...|+.+.+-+ |..++++|+.||.|+||+-
T Consensus 1063 n~~~pk~~~~hpf-~p~i~~ad~r~~i~vwd~-e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~ 1140 (1387)
T KOG1517|consen 1063 NNQPPKTLKFHPF-EPQIAAADDRERIRVWDW-EKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKD 1140 (1387)
T ss_pred CCCCCceeeecCC-CceeEEcCCcceEEEEec-ccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecc
Confidence 3335566778887 778888887889999999 677777766544 45689999877 5678999999999999964
Q ss_pred CC-----CcEEEEeeC--------CCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcC-cCCceeEEEEe
Q 007411 387 ET-----GQVIRTFST--------GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ-HLGAVNTITFV 452 (604)
Q Consensus 387 ~t-----~~~i~~~~~--------~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~-h~~~V~~i~~s 452 (604)
-. .+.+..+.. .....++.|.. ..++ |++++.-..|+|||......+..+.. ....|+++.-+
T Consensus 1141 y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ--~~G~-Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~ 1217 (1387)
T KOG1517|consen 1141 YADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQ--QSGH-LLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSAD 1217 (1387)
T ss_pred cccccCCceeEEeeccccccCccCCCCCeeeehhh--hCCe-EEecCCeeEEEEEecccceeEeecccCCCccceeeccc
Confidence 22 223332211 12223344443 3334 44555578999999988877776643 33456666554
Q ss_pred -CCCCEEEEEeCCCcEEEEECCCCeE--EEEeecCCCCc--ccEEEEcCCCC-EEEEEEcCCeEEEEEcCCceeeccccc
Q 007411 453 -DSNRRFVTSSDDKSLRVWEFGIPVV--IKYISEPHMHS--MPSISLHPNTN-WLAAQSLDNQILIYSTRERFQLNKKKR 526 (604)
Q Consensus 453 -p~~~~l~sgs~Dg~I~iwdl~~~~~--~~~~~~~~~~~--v~~l~~sp~g~-~l~s~s~Dg~I~iwd~~~~~~~~~~~~ 526 (604)
..|+.|++|..||+|++||.+.... .......|... |..+.+.++|- .|++|+.+|.|++||++........ .
T Consensus 1218 ~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~-~ 1296 (1387)
T KOG1517|consen 1218 LVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFL-T 1296 (1387)
T ss_pred ccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccc-e
Confidence 3478999999999999999986543 33333456666 89999988764 4999999999999999975322222 2
Q ss_pred ccCccc-ccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecC-------CCcEEEEEEecCCCCEEEEEeCCC
Q 007411 527 FAGHIV-AGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCH-------EGVCIGCEWHPLEQSKVATCGWDG 598 (604)
Q Consensus 527 ~~~~~~-~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h-------~~~V~~v~~sp~~~~~l~tgg~DG 598 (604)
...|-. .+..+++..+++...||+|+. +.|.||++. |+.+..++.+ .+.+.+++||| ..-+||+|..|.
T Consensus 1297 iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP-~~~llAaG~~Ds 1373 (1387)
T KOG1517|consen 1297 IVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHP-HRLLLAAGSADS 1373 (1387)
T ss_pred eeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecc-hhHhhhhccCCc
Confidence 222211 224788999999999999998 999999964 4444444322 34679999999 566889999999
Q ss_pred cEEEe
Q 007411 599 LIKYW 603 (604)
Q Consensus 599 ~I~vW 603 (604)
+|.||
T Consensus 1374 ~V~iY 1378 (1387)
T KOG1517|consen 1374 TVSIY 1378 (1387)
T ss_pred eEEEe
Confidence 99987
No 172
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.75 E-value=7.6e-17 Score=166.82 Aligned_cols=113 Identities=19% Similarity=0.376 Sum_probs=93.6
Q ss_pred ccEEEEcC-CCCEEEEEEcCCeEEEEEcCCceee----cccccccCcccccceEEEEEcC-CCCEEEEEcCCCcEEEEeC
Q 007411 489 MPSISLHP-NTNWLAAQSLDNQILIYSTRERFQL----NKKKRFAGHIVAGYACQVNFSP-DGRFVMSGDGEGKCWFWDW 562 (604)
Q Consensus 489 v~~l~~sp-~g~~l~s~s~Dg~I~iwd~~~~~~~----~~~~~~~~~~~~~~v~~l~~sp-dg~~L~sgs~dG~I~iwd~ 562 (604)
|+.+.|.| |...|++++.||.|++|.+..+... .....+..| ...|+.+.|+| -...|++++.|.+|++||+
T Consensus 630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h--~eKI~slRfHPLAadvLa~asyd~Ti~lWDl 707 (1012)
T KOG1445|consen 630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIH--GEKITSLRFHPLAADVLAVASYDSTIELWDL 707 (1012)
T ss_pred eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecc--cceEEEEEecchhhhHhhhhhccceeeeeeh
Confidence 55566666 4567899999999999998654322 222345555 56799999999 4568899999999999999
Q ss_pred CCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007411 563 KSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 563 ~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
.+++....+.+|.+.|.+++|+| +++.++|.+.||+|+||+
T Consensus 708 ~~~~~~~~l~gHtdqIf~~AWSp-dGr~~AtVcKDg~~rVy~ 748 (1012)
T KOG1445|consen 708 ANAKLYSRLVGHTDQIFGIAWSP-DGRRIATVCKDGTLRVYE 748 (1012)
T ss_pred hhhhhhheeccCcCceeEEEECC-CCcceeeeecCceEEEeC
Confidence 99999999999999999999999 788999999999999985
No 173
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=5.9e-17 Score=165.48 Aligned_cols=210 Identities=20% Similarity=0.352 Sum_probs=150.8
Q ss_pred eeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEE-ecCCCCceeeEEEcc--CCCEEEEEECCCcE
Q 007411 305 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRT-YMGHSKAVRDISFCN--DGTKFLTASYDKNI 381 (604)
Q Consensus 305 ~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~-~~~h~~~V~~l~fsp--dg~~L~s~s~Dg~I 381 (604)
+...|.||++.|+|+.|+.+ |.+|++||.|-.+.|||.. ..+++.. -.+|...|.++.|-| +.+.+++|+.|..|
T Consensus 42 lE~eL~GH~GCVN~LeWn~d-G~lL~SGSDD~r~ivWd~~-~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNAD-GELLASGSDDTRLIVWDPF-EYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred hhhhhccccceecceeecCC-CCEEeecCCcceEEeecch-hcceeeeeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence 34567899999999999999 9999999999999999995 5555544 469999999999999 56788999999999
Q ss_pred EEEECCCCcE----------EEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCce----------EEEEcC
Q 007411 382 KYWDTETGQV----------IRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI----------TQEYDQ 441 (604)
Q Consensus 382 ~vWD~~t~~~----------i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~----------~~~~~~ 441 (604)
+|+|+...+. ...+ ..+...+-.+.+.+...+.|.+++.||.|+.+|++.... +..+..
T Consensus 120 ~lfdl~~~~~~~~d~~~~~~~~~~-~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~ 198 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGMEETTRCW-SCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNP 198 (758)
T ss_pred EEEecccccccccccCccchhhhh-hhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhch
Confidence 9999985221 1111 112222223333344458999999999999999986321 111222
Q ss_pred cCCceeEEEEeCCC-CEEEEEeCCCcEEEEECCCC------------------eEEEEeecCCC-----------CcccE
Q 007411 442 HLGAVNTITFVDSN-RRFVTSSDDKSLRVWEFGIP------------------VVIKYISEPHM-----------HSMPS 491 (604)
Q Consensus 442 h~~~V~~i~~sp~~-~~l~sgs~Dg~I~iwdl~~~------------------~~~~~~~~~~~-----------~~v~~ 491 (604)
..-...|++++|.. .+|++|+.|-..++||.+.. .++.++...|. ..++-
T Consensus 199 ~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~ 278 (758)
T KOG1310|consen 199 QLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTY 278 (758)
T ss_pred hhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEE
Confidence 23456789999865 57889999999999995311 12333332222 11456
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEEcCC
Q 007411 492 ISLHPNTNWLAAQSLDNQILIYSTRE 517 (604)
Q Consensus 492 l~~sp~g~~l~s~s~Dg~I~iwd~~~ 517 (604)
++|+|+|.-|++.-..-.|++|++..
T Consensus 279 vtfnpNGtElLvs~~gEhVYlfdvn~ 304 (758)
T KOG1310|consen 279 VTFNPNGTELLVSWGGEHVYLFDVNE 304 (758)
T ss_pred EEECCCCcEEEEeeCCeEEEEEeecC
Confidence 78999998888877777899998754
No 174
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.75 E-value=2e-15 Score=157.18 Aligned_cols=270 Identities=9% Similarity=0.145 Sum_probs=175.9
Q ss_pred EEEEECCCcEEEEecCCCCe--eeEEecCCCCceeeEEEccCCCEEEEEE-CCCcEEEEECC-CCcE--EEEeeCCCcce
Q 007411 329 ILSAGMDTKVKIWDVVNSGK--CMRTYMGHSKAVRDISFCNDGTKFLTAS-YDKNIKYWDTE-TGQV--IRTFSTGKIPY 402 (604)
Q Consensus 329 L~sgs~Dg~I~IWd~~~~~~--~~~~~~~h~~~V~~l~fspdg~~L~s~s-~Dg~I~vWD~~-t~~~--i~~~~~~~~~~ 402 (604)
+++...++.|.+|++...++ .+.++. +.+....++++|++++|++++ .++.|.+|++. ++.. +........+.
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~ 83 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT 83 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce
Confidence 44447789999999943343 445554 446678899999999987765 47889999997 3432 33333344556
Q ss_pred EEEEccCCCCCcEEEEEEcCCeEEEEeCCCC----ceEEEEcCcCCceeEEEEeCCCCEEEEE-eCCCcEEEEECCCCeE
Q 007411 403 VVKLNPDDDKQNILLAGMSDKKIVQWDMNTK----EITQEYDQHLGAVNTITFVDSNRRFVTS-SDDKSLRVWEFGIPVV 477 (604)
Q Consensus 403 ~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~----~~~~~~~~h~~~V~~i~~sp~~~~l~sg-s~Dg~I~iwdl~~~~~ 477 (604)
.+.+.+++ ..++++...++.|.+|++.+. +.+..+. +.....++.++|++++++++ ..++.|.+||+.....
T Consensus 84 ~i~~~~~g--~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~ 160 (330)
T PRK11028 84 HISTDHQG--RFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGH 160 (330)
T ss_pred EEEECCCC--CEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCc
Confidence 66777644 244445556899999999742 2233332 33456788999999888654 4569999999976432
Q ss_pred EE-----EeecCCCCcccEEEEcCCCCEEEEEEc-CCeEEEEEcCCc--e--eecccccccCc-ccccceEEEEEcCCCC
Q 007411 478 IK-----YISEPHMHSMPSISLHPNTNWLAAQSL-DNQILIYSTRER--F--QLNKKKRFAGH-IVAGYACQVNFSPDGR 546 (604)
Q Consensus 478 ~~-----~~~~~~~~~v~~l~~sp~g~~l~s~s~-Dg~I~iwd~~~~--~--~~~~~~~~~~~-~~~~~v~~l~~spdg~ 546 (604)
+. ....+.......+.|+|+++++++++. ++.|.+|++... . .......+... ....+...+.++|+|+
T Consensus 161 l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~ 240 (330)
T PRK11028 161 LVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGR 240 (330)
T ss_pred ccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCC
Confidence 21 111123345678999999999988876 899999999732 1 11111111111 0112344688999999
Q ss_pred EEEEEcC-CCcEEEEeCCCCe----eEEEEecCCCcEEEEEEecCCCCEEEEEe-CCCcEEEeC
Q 007411 547 FVMSGDG-EGKCWFWDWKSCK----VFRTLKCHEGVCIGCEWHPLEQSKVATCG-WDGLIKYWD 604 (604)
Q Consensus 547 ~L~sgs~-dG~I~iwd~~t~~----~~~~l~~h~~~V~~v~~sp~~~~~l~tgg-~DG~I~vWD 604 (604)
+|+++.. ++.|.+|++.... .+..+... .....+.++| ++++|+++. .+++|.+|+
T Consensus 241 ~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~~-dg~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 241 HLYACDRTASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNIDH-SGKYLIAAGQKSHHISVYE 302 (330)
T ss_pred EEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEECC-CCCEEEEEEccCCcEEEEE
Confidence 9998864 7899999985432 23333322 2346789999 566666555 489999983
No 175
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.75 E-value=6.9e-17 Score=162.21 Aligned_cols=253 Identities=17% Similarity=0.195 Sum_probs=185.6
Q ss_pred eeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCe--eeEEecCCCCceeeEEEccCCCEEEEEECCCcEE
Q 007411 305 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGK--CMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIK 382 (604)
Q Consensus 305 ~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~--~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~ 382 (604)
-+..+..|+.+|.+|.|+|.+...+++.|.||+|++-|+ +... .+..+..-...+.++.|+.+...++.+..=|.+.
T Consensus 226 ~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~-~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~ 304 (498)
T KOG4328|consen 226 GVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDF-EGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFN 304 (498)
T ss_pred ceEEeccCCccccceEecCCChhheeeeccCceeeeeee-cchhhHHHhhcCccceeeeeccccCCCccEEEeecccceE
Confidence 456788999999999999998899999999999999999 3332 2233333456678888998888888888778999
Q ss_pred EEECCCCcE-EEEeeC-CCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCc----eEEEEcCcCCceeEEEEeCCCC
Q 007411 383 YWDTETGQV-IRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE----ITQEYDQHLGAVNTITFVDSNR 456 (604)
Q Consensus 383 vWD~~t~~~-i~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~----~~~~~~~h~~~V~~i~~sp~~~ 456 (604)
+||++++.. ...+.. ...+..+.++|... .++++++.|++++|||++... ++...-.|...|++..|+|.+.
T Consensus 305 ~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p--~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~g 382 (498)
T KOG4328|consen 305 VIDLRTDGSEYENLRLHKKKITSVALNPVCP--WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGG 382 (498)
T ss_pred EEEeecCCccchhhhhhhcccceeecCCCCc--hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCC
Confidence 999998765 222222 23555677777544 789999999999999998642 2233346999999999999998
Q ss_pred EEEEEeCCCcEEEEECC----CCeEEEEeecCCCC----cccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeccccccc
Q 007411 457 RFVTSSDDKSLRVWEFG----IPVVIKYISEPHMH----SMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFA 528 (604)
Q Consensus 457 ~l~sgs~Dg~I~iwdl~----~~~~~~~~~~~~~~----~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~ 528 (604)
.|++.+.|..|+|||.. ...+...|...+.. ......|.|+..+|++|..-..|-|||-..++.+..+ .
T Consensus 383 tl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el---~ 459 (498)
T KOG4328|consen 383 TLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCEL---H 459 (498)
T ss_pred ceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeec---c
Confidence 89999999999999983 33344444322222 2445689999999999999999999998877644322 1
Q ss_pred CcccccceEEEEEcCCCC-EEEEEcCCCcEEEEeCC
Q 007411 529 GHIVAGYACQVNFSPDGR-FVMSGDGEGKCWFWDWK 563 (604)
Q Consensus 529 ~~~~~~~v~~l~~spdg~-~L~sgs~dG~I~iwd~~ 563 (604)
........+-..|+|-+. +++.|+..|.|+||--+
T Consensus 460 ~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 460 DPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred CccccccccceeecccccceeccCCccceEEEEecC
Confidence 221122233478999888 44555578899988644
No 176
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=3.5e-16 Score=170.40 Aligned_cols=250 Identities=18% Similarity=0.323 Sum_probs=189.5
Q ss_pred CCCeEEEEEcCC-CCCEEEEEECCCcEEEEecCCCC----eeeEEecC---C----CCceeeEEEccCCCEEEEEECCCc
Q 007411 313 TKGVSAIRFFPK-YGHLILSAGMDTKVKIWDVVNSG----KCMRTYMG---H----SKAVRDISFCNDGTKFLTASYDKN 380 (604)
Q Consensus 313 ~~~V~~l~fsp~-~g~~L~sgs~Dg~I~IWd~~~~~----~~~~~~~~---h----~~~V~~l~fspdg~~L~s~s~Dg~ 380 (604)
...|+.+.+-.. +..+|++|+.||.|+||+-+... +.+..+.+ + .+.=.-+.|.....+|++++.-+.
T Consensus 1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~ 1188 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRS 1188 (1387)
T ss_pred CCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeE
Confidence 356888888653 35789999999999999876543 33332222 1 111134567776667777777899
Q ss_pred EEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCC---ceEEEEcCcCCc--eeEEEEeCCC
Q 007411 381 IKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK---EITQEYDQHLGA--VNTITFVDSN 455 (604)
Q Consensus 381 I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~---~~~~~~~~h~~~--V~~i~~sp~~ 455 (604)
|+|||.....++..+..+....+..++.+...++++++|..||.|++||.+.. ..+..++.|... |..+.+.+.|
T Consensus 1189 IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G 1268 (1387)
T KOG1517|consen 1189 IRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQG 1268 (1387)
T ss_pred EEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCC
Confidence 99999999999999988877777788887777899999999999999999864 367788889887 9999999876
Q ss_pred CE-EEEEeCCCcEEEEECCCCeEEEEe--ecCC--CCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccc---cc
Q 007411 456 RR-FVTSSDDKSLRVWEFGIPVVIKYI--SEPH--MHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKK---RF 527 (604)
Q Consensus 456 ~~-l~sgs~Dg~I~iwdl~~~~~~~~~--~~~~--~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~---~~ 527 (604)
-. |++|+.+|.|++||++.......+ .... .+.++++.+|+....+|+|+. +.|.||++.... +..++ .|
T Consensus 1269 ~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~-l~~~k~n~~F 1346 (1387)
T KOG1517|consen 1269 LGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQ-LNIIKYNPGF 1346 (1387)
T ss_pred CcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhh-hcccccCccc
Confidence 54 999999999999999985222221 1111 235999999999999999998 999999986543 22222 22
Q ss_pred cCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCC
Q 007411 528 AGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC 565 (604)
Q Consensus 528 ~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~ 565 (604)
.+.. .+.+.+++|+|.--+|++|+.|..|.||.....
T Consensus 1347 ~~q~-~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1347 MGQR-IGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred ccCc-CCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 2222 345678999999999999999999999986554
No 177
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.73 E-value=3e-16 Score=155.60 Aligned_cols=283 Identities=17% Similarity=0.291 Sum_probs=191.9
Q ss_pred eeccCccccccceeecCCCccccCCCCcccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCC------
Q 007411 272 FHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN------ 345 (604)
Q Consensus 272 ~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~------ 345 (604)
+.++.+.|++.|.|........... ..-..+..|..|...|++|+|+|+ |.+|+||+.+|.|.+|....
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~----~~V~y~s~Ls~H~~aVN~vRf~p~-gelLASg~D~g~v~lWk~~~~~~~~~ 102 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGD----MKVEYLSSLSRHTRAVNVVRFSPD-GELLASGGDGGEVFLWKQGDVRIFDA 102 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCc----eeEEEeecccCCcceeEEEEEcCC-cCeeeecCCCceEEEEEecCcCCccc
Confidence 6678899999999988665543322 233567889999999999999999 99999999999999997630
Q ss_pred -C--------CeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCC-CcceEEEEccCCCCCcE
Q 007411 346 -S--------GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNI 415 (604)
Q Consensus 346 -~--------~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~ 415 (604)
+ ....+.+.+|...|..++|+|++.++++++.|..+++||+..|+.+..+..+ +.+..++|.|.. .+
T Consensus 103 d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~---qy 179 (434)
T KOG1009|consen 103 DTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLN---QY 179 (434)
T ss_pred cchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhh---hh
Confidence 1 2345677899999999999999999999999999999999999998877543 344556665543 45
Q ss_pred EEEEEcCCeEEEEeCCCCceEEEEc--------C-----------cCC----ceeEEEEeCCCCEEEEEeC----CC---
Q 007411 416 LLAGMSDKKIVQWDMNTKEITQEYD--------Q-----------HLG----AVNTITFVDSNRRFVTSSD----DK--- 465 (604)
Q Consensus 416 lvsg~~dg~I~iwD~~s~~~~~~~~--------~-----------h~~----~V~~i~~sp~~~~l~sgs~----Dg--- 465 (604)
+++-+.|...+.+.+.....+.... . |.. -...++|+|+|..+++.+. .+
T Consensus 180 v~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~ 259 (434)
T KOG1009|consen 180 VASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVF 259 (434)
T ss_pred hhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCcee
Confidence 6666666666666554433222111 0 111 1345788899988887542 22
Q ss_pred --cEEEEECCC-CeEEEEeecCCCCcccEEEEcC------------------CCCEEEEEEcCCeEEEEEcCCceeeccc
Q 007411 466 --SLRVWEFGI-PVVIKYISEPHMHSMPSISLHP------------------NTNWLAAQSLDNQILIYSTRERFQLNKK 524 (604)
Q Consensus 466 --~I~iwdl~~-~~~~~~~~~~~~~~v~~l~~sp------------------~g~~l~s~s~Dg~I~iwd~~~~~~~~~~ 524 (604)
..++|+-.. .+++..+. ....+...+.++| .+-.+++++ .+.|++||..+...+...
T Consensus 260 ~n~tYvfsrk~l~rP~~~lp-~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v 337 (434)
T KOG1009|consen 260 RNTSYVFSRKDLKRPAARLP-SPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVV 337 (434)
T ss_pred eceeEeeccccccCceeecC-CCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEeccccccceEEE
Confidence 234444221 11222221 1122223333333 233445554 567999998876555433
Q ss_pred ccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeE
Q 007411 525 KRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVF 568 (604)
Q Consensus 525 ~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~ 568 (604)
.. ++-..++.++|++||.+|+..+.||...+.-+...++-
T Consensus 338 ~n----ihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 338 DN----IHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred ee----eeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 32 23567889999999999999999999888776665443
No 178
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.73 E-value=1.5e-15 Score=163.63 Aligned_cols=262 Identities=15% Similarity=0.226 Sum_probs=184.7
Q ss_pred CCcEEEEecCCCCeeeEEecCCCCceeeEEEcc-CCCEEEEEECCCcEEEEECCCCcE-----EEEeeCCCcc--eEEEE
Q 007411 335 DTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTETGQV-----IRTFSTGKIP--YVVKL 406 (604)
Q Consensus 335 Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fsp-dg~~L~s~s~Dg~I~vWD~~t~~~-----i~~~~~~~~~--~~~~~ 406 (604)
++.+.||++.+...+-..+. -...|+|+.|+| +..+++.|+++|+|.+||+..+.. +......+.. ..+.|
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred CceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence 35799999966655555554 567899999999 778889999999999999987765 2222333333 34445
Q ss_pred ccCCCCCcEEEEEEcCCeEEEEeCCCCceE-E-----EEc------CcCCceeEEEEeCC-CCEEEEEeCCCcEEEEECC
Q 007411 407 NPDDDKQNILLAGMSDKKIVQWDMNTKEIT-Q-----EYD------QHLGAVNTITFVDS-NRRFVTSSDDKSLRVWEFG 473 (604)
Q Consensus 407 ~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~-~-----~~~------~h~~~V~~i~~sp~-~~~l~sgs~Dg~I~iwdl~ 473 (604)
..+..+ .-|++++.||.|..|+++.-... . ... .....++++.|.+. ...|++|+++|.|..-+-.
T Consensus 300 ~~~~~~-~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~ 378 (555)
T KOG1587|consen 300 LQNEHN-TEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRK 378 (555)
T ss_pred eccCCC-CceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEecc
Confidence 444444 56899999999999988753221 0 111 12346788999874 4579999999988773322
Q ss_pred ---CCe----EEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcC-CceeecccccccCcccccceEEEEEcCCC
Q 007411 474 ---IPV----VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR-ERFQLNKKKRFAGHIVAGYACQVNFSPDG 545 (604)
Q Consensus 474 ---~~~----~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~v~~l~~spdg 545 (604)
... ........|.++|.++.++|-+..++..+.|.+++||... ....+ ..+..+ ..++++++|||-.
T Consensus 379 g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl---~~~~~~--~~~v~~vaWSptr 453 (555)
T KOG1587|consen 379 GYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPL---LSLDSS--PDYVTDVAWSPTR 453 (555)
T ss_pred CCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcc---hhhhhc--cceeeeeEEcCcC
Confidence 222 1121223588899999999987665555559999999876 33222 222222 4568899999964
Q ss_pred -CEEEEEcCCCcEEEEeCC--CCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007411 546 -RFVMSGDGEGKCWFWDWK--SCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 546 -~~L~sgs~dG~I~iwd~~--t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
..+++++.+|.|.|||+. ...++.+.+.+......+.|++ .+..|+.|...|.|.+|+
T Consensus 454 pavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~-~g~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 454 PAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSP-NGKLLAVGDANGTTHILK 514 (555)
T ss_pred ceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCC-CCcEEEEecCCCcEEEEE
Confidence 567788899999999995 4556666666666667778877 788999999999999985
No 179
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.72 E-value=4.4e-16 Score=167.68 Aligned_cols=246 Identities=18% Similarity=0.282 Sum_probs=180.3
Q ss_pred CCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCee-e----EEecCCCCceeeEEEccCC--CEEEEEECCCcEEEEE
Q 007411 313 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKC-M----RTYMGHSKAVRDISFCNDG--TKFLTASYDKNIKYWD 385 (604)
Q Consensus 313 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~-~----~~~~~h~~~V~~l~fspdg--~~L~s~s~Dg~I~vWD 385 (604)
...|+|+.|+|...++|+.|..+|.|.+||+...... . .....|..+|+.+.|..+- .-|++++.||.|+.|+
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~ 321 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD 321 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence 4679999999998999999999999999999544432 1 2234689999999998743 4599999999999998
Q ss_pred CCCCcEE------E-------EeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCC---CC-----ceEEEEcCcCC
Q 007411 386 TETGQVI------R-------TFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN---TK-----EITQEYDQHLG 444 (604)
Q Consensus 386 ~~t~~~i------~-------~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~---s~-----~~~~~~~~h~~ 444 (604)
++.-... . .........++.|.+.. .+.|++|+..|.|..-+-. .. +....+..|.+
T Consensus 322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~--p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g 399 (555)
T KOG1587|consen 322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTD--PNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG 399 (555)
T ss_pred ccccccchhhcccccccccccccccccceeeEeeccCC--CceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence 8643221 0 11122334556666644 4789999999999884332 22 22345667899
Q ss_pred ceeEEEEeCCCCEEEEEeCCCcEEEEECC-CCeEEEEeecCCCCcccEEEEcCCC-CEEEEEEcCCeEEEEEcCCceeec
Q 007411 445 AVNTITFVDSNRRFVTSSDDKSLRVWEFG-IPVVIKYISEPHMHSMPSISLHPNT-NWLAAQSLDNQILIYSTRERFQLN 522 (604)
Q Consensus 445 ~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~-~~~~~~~~~~~~~~~v~~l~~sp~g-~~l~s~s~Dg~I~iwd~~~~~~~~ 522 (604)
+|+++.++|-+..++..+.|.+++||... ...++..+ ..+...+++++|+|.. ..|+++..||.|.+||+.......
T Consensus 400 ~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~-~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~P 478 (555)
T KOG1587|consen 400 PVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSL-DSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEP 478 (555)
T ss_pred ceEeeecCCCccceeeeeccceeEeccccCCCCcchhh-hhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCC
Confidence 99999999988776666669999999987 44444443 3466679999999975 577888889999999997543221
Q ss_pred ccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC
Q 007411 523 KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS 564 (604)
Q Consensus 523 ~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t 564 (604)
. ....-. ....+.+.|+++|++|++|+..|++.+|++..
T Consensus 479 v-~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 479 V-LSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred c-cccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 1 111111 34566788999999999999999999999853
No 180
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=2.7e-15 Score=161.84 Aligned_cols=287 Identities=14% Similarity=0.217 Sum_probs=205.6
Q ss_pred CCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCC---CCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECC
Q 007411 311 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN---SGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE 387 (604)
Q Consensus 311 gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~---~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~ 387 (604)
-|+..++|.++||. +.++++|..||.|.+|.-.. .....+.+.-|...|.+++|+++|.+|++|+..|.+.+|.++
T Consensus 203 ~Htf~~t~~~~spn-~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 203 HHTFNITCVALSPN-ERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE 281 (792)
T ss_pred hhcccceeEEeccc-cceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence 46777999999999 99999999999999996422 224456677899999999999999999999999999999999
Q ss_pred CCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCc-----------CCceeEEEEeCCCC
Q 007411 388 TGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQH-----------LGAVNTITFVDSNR 456 (604)
Q Consensus 388 t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h-----------~~~V~~i~~sp~~~ 456 (604)
+++...--+.+.....+.+++++ .+......|+.|.+....+.+...++.+- .+-.+.++++|.-+
T Consensus 282 T~~kqfLPRLgs~I~~i~vS~ds---~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~ 358 (792)
T KOG1963|consen 282 TGKKQFLPRLGSPILHIVVSPDS---DLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN 358 (792)
T ss_pred CCCcccccccCCeeEEEEEcCCC---CeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCC
Confidence 99854444556677777777655 56777888999999988766554444332 34467788999778
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEeec----C------CCCcccEEEEcCCCCEEEEEE--------cC--CeEEEEEcC
Q 007411 457 RFVTSSDDKSLRVWEFGIPVVIKYISE----P------HMHSMPSISLHPNTNWLAAQS--------LD--NQILIYSTR 516 (604)
Q Consensus 457 ~l~sgs~Dg~I~iwdl~~~~~~~~~~~----~------~~~~v~~l~~sp~g~~l~s~s--------~D--g~I~iwd~~ 516 (604)
.++-.+..|.|.+||+-+...+..+.. . +.-.++.++.+-.|.++++.- .| ..+++|-..
T Consensus 359 ~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n 438 (792)
T KOG1963|consen 359 SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYN 438 (792)
T ss_pred ceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEc
Confidence 889999999999999987765544321 1 122366677777899988864 23 346778655
Q ss_pred Cceeecc--cccccCcccccceEEEEEcCC-CCEEEEEcCCCcEEEEeCCCC----------eeEEEEecCCCcEEEEEE
Q 007411 517 ERFQLNK--KKRFAGHIVAGYACQVNFSPD-GRFVMSGDGEGKCWFWDWKSC----------KVFRTLKCHEGVCIGCEW 583 (604)
Q Consensus 517 ~~~~~~~--~~~~~~~~~~~~v~~l~~spd-g~~L~sgs~dG~I~iwd~~t~----------~~~~~l~~h~~~V~~v~~ 583 (604)
....-.. ......|.....++ +.+++- ....++++.||.++||-+... .+...-.-|..++++++|
T Consensus 439 ~~~kt~~L~T~I~~PH~~~~vat-~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~f 517 (792)
T KOG1963|consen 439 PNSKTFILNTKINNPHGNAFVAT-IFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCF 517 (792)
T ss_pred CCcceeEEEEEEecCCCceeEEE-EEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhh
Confidence 4322211 12233343333333 333333 337899999999999987321 222211237789999999
Q ss_pred ecCCCCEEEEEeCCCcEEEeC
Q 007411 584 HPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 584 sp~~~~~l~tgg~DG~I~vWD 604 (604)
+. ++ .++++|.|++|.+||
T Consensus 518 s~-dG-slla~s~~~~Itiwd 536 (792)
T KOG1963|consen 518 SQ-DG-SLLAVSFDDTITIWD 536 (792)
T ss_pred cC-CC-cEEEEecCCEEEEec
Confidence 98 55 477788899999998
No 181
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=1e-15 Score=147.00 Aligned_cols=213 Identities=15% Similarity=0.309 Sum_probs=164.6
Q ss_pred cceeEEecCCCCCeEEEEEc-CCCCCEEEEEECCCcEEEEecCCC--------CeeeEEecCCCCceeeEEEcc--CCCE
Q 007411 303 KRLVHTWSGHTKGVSAIRFF-PKYGHLILSAGMDTKVKIWDVVNS--------GKCMRTYMGHSKAVRDISFCN--DGTK 371 (604)
Q Consensus 303 ~~~i~tl~gH~~~V~~l~fs-p~~g~~L~sgs~Dg~I~IWd~~~~--------~~~~~~~~~h~~~V~~l~fsp--dg~~ 371 (604)
..+...++.|.+.|..|.|. |..|+.+|+|+.|+++.||.-... -....++......|++|.|.| -|-.
T Consensus 49 W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLk 128 (361)
T KOG2445|consen 49 WSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLK 128 (361)
T ss_pred eEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceE
Confidence 35778899999999999995 667999999999999999975211 123456677888999999999 5788
Q ss_pred EEEEECCCcEEEEECCCCc------EEEEee--------CCCcceEEEEccCCCCCcEEEEEEcC-----CeEEEEeCCC
Q 007411 372 FLTASYDKNIKYWDTETGQ------VIRTFS--------TGKIPYVVKLNPDDDKQNILLAGMSD-----KKIVQWDMNT 432 (604)
Q Consensus 372 L~s~s~Dg~I~vWD~~t~~------~i~~~~--------~~~~~~~~~~~~~~~~~~~lvsg~~d-----g~I~iwD~~s 432 (604)
|++++.||.||||+.-.-- ....+. ......|+.|++..-...+|++|+.+ +.++||....
T Consensus 129 lA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e 208 (361)
T KOG2445|consen 129 LAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNE 208 (361)
T ss_pred EEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecC
Confidence 9999999999999865432 222222 23345678888776667788888876 5788887654
Q ss_pred C----ceEEEEcCcCCceeEEEEeCCC----CEEEEEeCCCcEEEEECCCCe-----------------EEEEe--ecCC
Q 007411 433 K----EITQEYDQHLGAVNTITFVDSN----RRFVTSSDDKSLRVWEFGIPV-----------------VIKYI--SEPH 485 (604)
Q Consensus 433 ~----~~~~~~~~h~~~V~~i~~sp~~----~~l~sgs~Dg~I~iwdl~~~~-----------------~~~~~--~~~~ 485 (604)
+ ..+.++.+|..+|+.|+|.|+- ..|++++.|| |+||.+.... .+..+ ...|
T Consensus 209 ~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H 287 (361)
T KOG2445|consen 209 NGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDH 287 (361)
T ss_pred CcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCC
Confidence 3 3456678999999999999963 4689999999 9999986311 11222 2468
Q ss_pred CCcccEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 007411 486 MHSMPSISLHPNTNWLAAQSLDNQILIYSTR 516 (604)
Q Consensus 486 ~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~ 516 (604)
...|..+.|+-.|..|++.+.||.|++|...
T Consensus 288 ~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 288 NGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred CCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 8899999999999999999999999999754
No 182
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.72 E-value=1.9e-15 Score=143.90 Aligned_cols=284 Identities=16% Similarity=0.281 Sum_probs=202.3
Q ss_pred eeEEecCCCCCeEEEEEc--CCCCCEEEEEEC----CCcEEEEecCCCCeeeEE--ecCCCCceeeEEEccCC-----CE
Q 007411 305 LVHTWSGHTKGVSAIRFF--PKYGHLILSAGM----DTKVKIWDVVNSGKCMRT--YMGHSKAVRDISFCNDG-----TK 371 (604)
Q Consensus 305 ~i~tl~gH~~~V~~l~fs--p~~g~~L~sgs~----Dg~I~IWd~~~~~~~~~~--~~~h~~~V~~l~fspdg-----~~ 371 (604)
.+.++..| -.+.++.|+ |+.+.+|+.|+. .+.|.|-.+......+.. -..|.-+++.+.|.|+. .+
T Consensus 37 eiy~Y~ap-~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdl 115 (364)
T KOG0290|consen 37 EIYTYNAP-WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDL 115 (364)
T ss_pred eEEEecCC-CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcch
Confidence 35555544 347888888 444678888874 567777766433322221 23799999999999975 35
Q ss_pred EEEEECCCcEEEEECCC--CcEE--EEee----CCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCc---eEEEEc
Q 007411 372 FLTASYDKNIKYWDTET--GQVI--RTFS----TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE---ITQEYD 440 (604)
Q Consensus 372 L~s~s~Dg~I~vWD~~t--~~~i--~~~~----~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~---~~~~~~ 440 (604)
|++++ ..+++|.+.. .+.. ..+. .........|.++.-+.+++.+.+-|-+..|||+.++. ....+-
T Consensus 116 LATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLI 193 (364)
T KOG0290|consen 116 LATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLI 193 (364)
T ss_pred hhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEE
Confidence 66654 4899999873 2211 1111 12223345555655666899999999999999999863 355677
Q ss_pred CcCCceeEEEEeCCC-CEEEEEeCCCcEEEEECCCCeEEEEeec-CC-CCcccEEEEcCC-CCEEEEEEcC-CeEEEEEc
Q 007411 441 QHLGAVNTITFVDSN-RRFVTSSDDKSLRVWEFGIPVVIKYISE-PH-MHSMPSISLHPN-TNWLAAQSLD-NQILIYST 515 (604)
Q Consensus 441 ~h~~~V~~i~~sp~~-~~l~sgs~Dg~I~iwdl~~~~~~~~~~~-~~-~~~v~~l~~sp~-g~~l~s~s~D-g~I~iwd~ 515 (604)
.|...|..|+|...+ +.|++.+.||+||+||++.......+.+ +. ..+...++|++. -+++|+-..| ..|.|.|+
T Consensus 194 AHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDi 273 (364)
T KOG0290|consen 194 AHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDI 273 (364)
T ss_pred ecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEe
Confidence 899999999999754 4799999999999999998755444433 23 567888999875 4677776665 56999999
Q ss_pred CCceeecccccccCcccccceEEEEEcCC-CCEEEEEcCCCcEEEEeCCCCe------eEEEEecCCCcEEEEEEecCCC
Q 007411 516 RERFQLNKKKRFAGHIVAGYACQVNFSPD-GRFVMSGDGEGKCWFWDWKSCK------VFRTLKCHEGVCIGCEWHPLEQ 588 (604)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~v~~l~~spd-g~~L~sgs~dG~I~iwd~~t~~------~~~~l~~h~~~V~~v~~sp~~~ 588 (604)
+... .....+.+| .+.|..++|.|. ...|++++.|..+.+||+.+.- ++..+. ..+.|+.+.|++..+
T Consensus 274 R~P~--tpva~L~~H--~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~ 348 (364)
T KOG0290|consen 274 RVPC--TPVARLRNH--QASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQP 348 (364)
T ss_pred cCCC--cceehhhcC--cccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCC
Confidence 8653 335667777 577899999995 5689999999999999997532 222333 456799999998778
Q ss_pred CEEEEEeC
Q 007411 589 SKVATCGW 596 (604)
Q Consensus 589 ~~l~tgg~ 596 (604)
..|+.|..
T Consensus 349 Dwiai~~~ 356 (364)
T KOG0290|consen 349 DWIAICFG 356 (364)
T ss_pred CEEEEEec
Confidence 88887764
No 183
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=1.4e-15 Score=163.88 Aligned_cols=234 Identities=15% Similarity=0.137 Sum_probs=165.7
Q ss_pred CCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECC---CcEEEEECCCCcEEEEeeCCCcceEEEEccCCC
Q 007411 335 DTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD---KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDD 411 (604)
Q Consensus 335 Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~D---g~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~ 411 (604)
+..|.|||. .+...+.+..|...+.+.+|+|+|+.|+.++.+ ..|.+||+.+++...............|+|++.
T Consensus 183 ~~~i~i~d~--dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~ 260 (429)
T PRK01742 183 PYEVRVADY--DGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGS 260 (429)
T ss_pred eEEEEEECC--CCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCC
Confidence 468999998 344456677888899999999999999988764 369999999886533322222333567777543
Q ss_pred CCcEEEEEEcCCe--EEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEe-CCCcEEEEECCCCe-EEEEeecCCCC
Q 007411 412 KQNILLAGMSDKK--IVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSS-DDKSLRVWEFGIPV-VIKYISEPHMH 487 (604)
Q Consensus 412 ~~~~lvsg~~dg~--I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs-~Dg~I~iwdl~~~~-~~~~~~~~~~~ 487 (604)
.++++...+|. |++||+.++.. ..+..+...+....|+|+++.|+.++ .++...||++.... ....+ .+..
T Consensus 261 --~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l--~~~~ 335 (429)
T PRK01742 261 --RLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV--GGRG 335 (429)
T ss_pred --EEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe--cCCC
Confidence 34444456775 45557766654 44556777788999999999877665 57888888875322 22222 2222
Q ss_pred cccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeC--CCC
Q 007411 488 SMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW--KSC 565 (604)
Q Consensus 488 ~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~--~t~ 565 (604)
.++.|+|+|++|++.+.++ +.+||+.++......... ....+.|+|+|++|+.++.+|.+.+|.+ .+|
T Consensus 336 --~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~-------~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G 405 (429)
T PRK01742 336 --YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF-------LDESPSISPNGIMIIYSSTQGLGKVLQLVSADG 405 (429)
T ss_pred --CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC-------CCCCceECCCCCEEEEEEcCCCceEEEEEECCC
Confidence 4578999999999888755 666998776433211111 1124789999999999999998888876 468
Q ss_pred eeEEEEecCCCcEEEEEEec
Q 007411 566 KVFRTLKCHEGVCIGCEWHP 585 (604)
Q Consensus 566 ~~~~~l~~h~~~V~~v~~sp 585 (604)
+.+..+..|.+.+...+|+|
T Consensus 406 ~~~~~l~~~~g~~~~p~wsp 425 (429)
T PRK01742 406 RFKARLPGSDGQVKFPAWSP 425 (429)
T ss_pred CceEEccCCCCCCCCcccCC
Confidence 88899988988899999998
No 184
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.71 E-value=7.8e-16 Score=152.01 Aligned_cols=254 Identities=17% Similarity=0.249 Sum_probs=179.1
Q ss_pred CCEEEEE---ECCCcEEEEecCCCCee---eEEecCCCCceeeEEEcc-CCCEEEEEECCCcEEEEECCCCcEE------
Q 007411 326 GHLILSA---GMDTKVKIWDVVNSGKC---MRTYMGHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTETGQVI------ 392 (604)
Q Consensus 326 g~~L~sg---s~Dg~I~IWd~~~~~~~---~~~~~~h~~~V~~l~fsp-dg~~L~s~s~Dg~I~vWD~~t~~~i------ 392 (604)
.++|+.. +..|...+--+...|+. .-.+.||.++|.+++|+| +...|+|||.|.+|.||.+-.+-..
T Consensus 44 PkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltep 123 (472)
T KOG0303|consen 44 PKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEP 123 (472)
T ss_pred CceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccc
Confidence 4555442 33344555444334432 234569999999999999 6778999999999999999765432
Q ss_pred -EEeeC-CCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEE
Q 007411 393 -RTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVW 470 (604)
Q Consensus 393 -~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iw 470 (604)
..+.. ......+.|+|.. .++|++++.|..|.+|++.+++.+.++. |...|.++.|+.+|.+|++++.|+.|+||
T Consensus 124 vv~L~gH~rrVg~V~wHPtA--~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~ 200 (472)
T KOG0303|consen 124 VVELYGHQRRVGLVQWHPTA--PNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVI 200 (472)
T ss_pred eEEEeecceeEEEEeecccc--hhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEE
Confidence 22322 2334566677754 4899999999999999999999988887 99999999999999999999999999999
Q ss_pred ECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEE---cCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCE
Q 007411 471 EFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS---LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRF 547 (604)
Q Consensus 471 dl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s---~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~ 547 (604)
|.+++..+..-.......-..+.|-.++.++.+|- .+.++-+||..+-........+.. +..|.---|.+|.++
T Consensus 201 dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt---SnGvl~PFyD~dt~i 277 (472)
T KOG0303|consen 201 DPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDT---SNGVLLPFYDPDTSI 277 (472)
T ss_pred cCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEecc---CCceEEeeecCCCCE
Confidence 99999888776332233456677888888555543 467899998766433322222222 344554567888888
Q ss_pred EE-EEcCCCcEEEEeCCCCeeE-EEEec--CCCcEEEEEEec
Q 007411 548 VM-SGDGEGKCWFWDWKSCKVF-RTLKC--HEGVCIGCEWHP 585 (604)
Q Consensus 548 L~-sgs~dG~I~iwd~~t~~~~-~~l~~--h~~~V~~v~~sp 585 (604)
|+ +|-.|+.|+-|.+..-.+. +-+.. ...+-.++.|.|
T Consensus 278 vYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mP 319 (472)
T KOG0303|consen 278 VYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMP 319 (472)
T ss_pred EEEEecCCcceEEEEecCCCceeEEecccccCCccccccccc
Confidence 75 5668999999998776642 22221 223445666666
No 185
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.70 E-value=3e-14 Score=148.36 Aligned_cols=251 Identities=12% Similarity=0.174 Sum_probs=165.0
Q ss_pred eeEEecCCCCCeEEEEEcCCCCCEEEEE-ECCCcEEEEecCCCCee--eEEecCCCCceeeEEEccCCCEEEEEEC-CCc
Q 007411 305 LVHTWSGHTKGVSAIRFFPKYGHLILSA-GMDTKVKIWDVVNSGKC--MRTYMGHSKAVRDISFCNDGTKFLTASY-DKN 380 (604)
Q Consensus 305 ~i~tl~gH~~~V~~l~fsp~~g~~L~sg-s~Dg~I~IWd~~~~~~~--~~~~~~h~~~V~~l~fspdg~~L~s~s~-Dg~ 380 (604)
++.++. +.+....++++|+ +++|+++ ..++.|.+|++...+.. +.... .......++|+|++++|++++. ++.
T Consensus 27 ~~~~~~-~~~~~~~l~~spd-~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~ 103 (330)
T PRK11028 27 LLQVVD-VPGQVQPMVISPD-KRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANC 103 (330)
T ss_pred eeeEEe-cCCCCccEEECCC-CCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCe
Confidence 445554 3456788999999 7777665 45889999999533332 22222 3345678999999999988875 789
Q ss_pred EEEEECCCC----cEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEE-----Ec-CcCCceeEEE
Q 007411 381 IKYWDTETG----QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQE-----YD-QHLGAVNTIT 450 (604)
Q Consensus 381 I~vWD~~t~----~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~-----~~-~h~~~V~~i~ 450 (604)
|.+|++++. +.+..+.....+..+.+.+++ ..++++...++.|.+||+.+...+.. .. ........+.
T Consensus 104 v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g--~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~ 181 (330)
T PRK11028 104 VSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDN--RTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMV 181 (330)
T ss_pred EEEEEECCCCCCCCceeeccCCCcccEeEeCCCC--CEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEE
Confidence 999999742 233333333345566676643 35556677789999999976332211 11 1234467899
Q ss_pred EeCCCCEEEEEeC-CCcEEEEECCC--C--eEEEEeec-CC----CCcccEEEEcCCCCEEEEEEc-CCeEEEEEcCCce
Q 007411 451 FVDSNRRFVTSSD-DKSLRVWEFGI--P--VVIKYISE-PH----MHSMPSISLHPNTNWLAAQSL-DNQILIYSTRERF 519 (604)
Q Consensus 451 ~sp~~~~l~sgs~-Dg~I~iwdl~~--~--~~~~~~~~-~~----~~~v~~l~~sp~g~~l~s~s~-Dg~I~iwd~~~~~ 519 (604)
|+|++++++++.. +++|.+|++.. + ..+..+.. +. ......+.++|++++|+++.. ++.|.+|++....
T Consensus 182 ~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~ 261 (330)
T PRK11028 182 FHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDG 261 (330)
T ss_pred ECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCC
Confidence 9999999988776 89999999973 2 22332221 11 111235889999999998864 6899999985432
Q ss_pred -eecccccccCcccccceEEEEEcCCCCEEEEEcC-CCcEEEEeCC
Q 007411 520 -QLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG-EGKCWFWDWK 563 (604)
Q Consensus 520 -~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~-dG~I~iwd~~ 563 (604)
.......... ......+.++|+|++|+++.. ++.|.+|++.
T Consensus 262 ~~~~~~~~~~~---~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 262 SVLSFEGHQPT---ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CeEEEeEEEec---cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 1111111111 123346899999999998775 8999999874
No 186
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.70 E-value=9.7e-18 Score=178.33 Aligned_cols=240 Identities=23% Similarity=0.385 Sum_probs=187.9
Q ss_pred cceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEE
Q 007411 303 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIK 382 (604)
Q Consensus 303 ~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~ 382 (604)
-+.++.+.||...|+|+.|... |+++++|+.|..|+||.. ++..++....||.+.|++++.+.+..+++++++|..|+
T Consensus 180 mk~ikrLlgH~naVyca~fDrt-g~~Iitgsdd~lvKiwS~-et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIr 257 (1113)
T KOG0644|consen 180 MKNIKRLLGHRNAVYCAIFDRT-GRYIITGSDDRLVKIWSM-ETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIR 257 (1113)
T ss_pred HHHHHHHHhhhhheeeeeeccc-cceEeecCccceeeeeec-cchhhhccCCCCccccchhccchhhhhhhhcccCceEE
Confidence 3566778899999999999998 999999999999999997 79999999999999999999988777777777777666
Q ss_pred EEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEe
Q 007411 383 YWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSS 462 (604)
Q Consensus 383 vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs 462 (604)
+|.+.. +.++..+.+|.+.|++|+|+|-. +.+
T Consensus 258 vWrl~~--------------------------------------------~~pvsvLrghtgavtaiafsP~~----sss 289 (1113)
T KOG0644|consen 258 VWRLPD--------------------------------------------GAPVSVLRGHTGAVTAIAFSPRA----SSS 289 (1113)
T ss_pred EEecCC--------------------------------------------CchHHHHhccccceeeeccCccc----cCC
Confidence 666543 44555667899999999999865 788
Q ss_pred CCCcEEEEECCCCeEEEEeec----CCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEE
Q 007411 463 DDKSLRVWEFGIPVVIKYISE----PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQ 538 (604)
Q Consensus 463 ~Dg~I~iwdl~~~~~~~~~~~----~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 538 (604)
.||++++||.+ ...+.+... ....-+.++.+..++.-+++++.|+.-..|.+... ..+ ...+.-
T Consensus 290 ~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l---------~~~--~~~lif 357 (1113)
T KOG0644|consen 290 DDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQL---------AWR--SNLLIF 357 (1113)
T ss_pred CCCceEecccc-ccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHh---------hhh--ccceEE
Confidence 99999999998 222222211 12234666777778888999999998888765321 111 011111
Q ss_pred EEEcCC-CCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007411 539 VNFSPD-GRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 539 l~~spd-g~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
+.++.+ ..+.+++-.+-.+++|++.+|.+++.+.+|...+..+.+||.+.....++|.||.+.|||
T Consensus 358 ~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwd 424 (1113)
T KOG0644|consen 358 VTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWD 424 (1113)
T ss_pred EeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeee
Confidence 222222 246667778889999999999999999999999999999999998999999999999997
No 187
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.69 E-value=5.4e-15 Score=142.79 Aligned_cols=277 Identities=17% Similarity=0.309 Sum_probs=195.2
Q ss_pred CcceeeccCccccccceeecCCCccccC-CCCcccCcceeEEecCCCCCeEEEEEc-------CCCCCEEEEEECCCcEE
Q 007411 268 DKSTFHGKEETDYQGRSWIAPPKDAKAA-NDHCYIPKRLVHTWSGHTKGVSAIRFF-------PKYGHLILSAGMDTKVK 339 (604)
Q Consensus 268 ~~s~~~~~~~~d~~~r~w~~~~~~~~~~-~~~~~~p~~~i~tl~gH~~~V~~l~fs-------p~~g~~L~sgs~Dg~I~ 339 (604)
+.+.++. ...|.-.+.|..|+...... ....+.++.+...+. ....|...+|. |+ ..++++.+.+.-|+
T Consensus 60 DGSciL~-~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~-eg~tvydy~wYs~M~s~qP~-t~l~a~ssr~~PIh 136 (406)
T KOG2919|consen 60 DGSCILS-LSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQ-EGETVYDYCWYSRMKSDQPS-TNLFAVSSRDQPIH 136 (406)
T ss_pred CCceEEe-ecccCeeeEEecChhhcccCCCCccccccceeEEec-cCCEEEEEEeeeccccCCCc-cceeeeccccCcee
Confidence 3444433 34566678887777665333 333344444433332 34568888887 45 67999999999999
Q ss_pred EEecCCCCeeeEEecC--CCC---ceeeEEEccCCCEEEEEECCCcEEEEEC-CCCcEEEE---ee-----CCCcceEEE
Q 007411 340 IWDVVNSGKCMRTYMG--HSK---AVRDISFCNDGTKFLTASYDKNIKYWDT-ETGQVIRT---FS-----TGKIPYVVK 405 (604)
Q Consensus 340 IWd~~~~~~~~~~~~~--h~~---~V~~l~fspdg~~L~s~s~Dg~I~vWD~-~t~~~i~~---~~-----~~~~~~~~~ 405 (604)
+||. -+++....+.+ |.. ...+++|+|||..|++| +.++|+++|+ +.|.-... +. ......+++
T Consensus 137 ~wda-ftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a 214 (406)
T KOG2919|consen 137 LWDA-FTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFA 214 (406)
T ss_pred eeec-cccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeeee
Confidence 9999 57777766653 433 35689999999998866 5689999999 55542221 11 233445566
Q ss_pred EccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeC-CCcEEEEECCCCeEEEEeecC
Q 007411 406 LNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD-DKSLRVWEFGIPVVIKYISEP 484 (604)
Q Consensus 406 ~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~-Dg~I~iwdl~~~~~~~~~~~~ 484 (604)
++|.. ...+++|+....+-||.-..+.++..+.+|.+.|+.++|.++|+.|++|+. |-.|..||++....+..-...
T Consensus 215 ~sP~~--~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~r 292 (406)
T KOG2919|consen 215 FSPMD--SKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALER 292 (406)
T ss_pred ccCCC--CcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhh
Confidence 66654 468999999999999999999999999999999999999999999999975 668999999876544333333
Q ss_pred CCC-ccc--EEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCC
Q 007411 485 HMH-SMP--SISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG 555 (604)
Q Consensus 485 ~~~-~v~--~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG 555 (604)
|.. .-. -..+.|.+++|++|+.||.|++||+..... ....+..+ ...+..++++|--.++++++...
T Consensus 293 hv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn--~~sv~~~~--sd~vNgvslnP~mpilatssGqr 362 (406)
T KOG2919|consen 293 HVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN--EVSVTGNY--SDTVNGVSLNPIMPILATSSGQR 362 (406)
T ss_pred hccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC--cccccccc--cccccceecCcccceeeeccCce
Confidence 333 222 345578899999999999999999987322 12222222 45577799999988888877653
No 188
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=3.3e-16 Score=161.12 Aligned_cols=246 Identities=17% Similarity=0.252 Sum_probs=179.0
Q ss_pred ccCcceeeccCccccccceeecCCCccccCCCCcccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCC
Q 007411 266 VEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN 345 (604)
Q Consensus 266 ~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~ 345 (604)
+........+...|.....|.. +. .....-...+++.+|++|.++|.|++..++ ++.+++|+.||+|+.|++..
T Consensus 302 ~~~sep~lit~sed~~lk~WnL--qk---~~~s~~~~~epi~tfraH~gPVl~v~v~~n-~~~~ysgg~Dg~I~~w~~p~ 375 (577)
T KOG0642|consen 302 FHPSEPVLITASEDGTLKLWNL--QK---AKKSAEKDVEPILTFRAHEGPVLCVVVPSN-GEHCYSGGIDGTIRCWNLPP 375 (577)
T ss_pred cCCCCCeEEEeccccchhhhhh--cc---cCCccccceeeeEEEecccCceEEEEecCC-ceEEEeeccCceeeeeccCC
Confidence 3333334445555666666765 11 111112334689999999999999999998 99999999999999996631
Q ss_pred ---------CCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeC---CCcceEEEEccCCCCC
Q 007411 346 ---------SGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST---GKIPYVVKLNPDDDKQ 413 (604)
Q Consensus 346 ---------~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~---~~~~~~~~~~~~~~~~ 413 (604)
......++.||.+.|+.+++|+...+|++|+.||++++|+...... ++|.. ...+..+.+.....
T Consensus 376 n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~-- 452 (577)
T KOG0642|consen 376 NQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRP-- 452 (577)
T ss_pred CCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchh--
Confidence 1234567889999999999999988999999999999999877766 33332 33444554443321
Q ss_pred cEEEEEEcCCeEEEEeCCCCceEEEEcCc-------CCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCC
Q 007411 414 NILLAGMSDKKIVQWDMNTKEITQEYDQH-------LGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHM 486 (604)
Q Consensus 414 ~~lvsg~~dg~I~iwD~~s~~~~~~~~~h-------~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~ 486 (604)
.+.++...-+.-.++++.....+..+... ...++-+.++|.+.+.+++..|+.|+++|..++..+.... .|.
T Consensus 453 a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~-a~~ 531 (577)
T KOG0642|consen 453 AHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMV-AHK 531 (577)
T ss_pred HhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchhee-ecc
Confidence 23344444444445555554444444321 2346778899999999999999999999999998887665 588
Q ss_pred CcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceee
Q 007411 487 HSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQL 521 (604)
Q Consensus 487 ~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~ 521 (604)
..++++++.|+|.+|++++.|+.+++|.+....+.
T Consensus 532 ~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~ 566 (577)
T KOG0642|consen 532 DSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCV 566 (577)
T ss_pred ceecceeecCCCceEEeecCCceeehhhccchhee
Confidence 89999999999999999999999999998765443
No 189
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.69 E-value=7e-14 Score=137.63 Aligned_cols=236 Identities=14% Similarity=0.228 Sum_probs=182.1
Q ss_pred CCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECC--CcEEEEECCCCc
Q 007411 313 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD--KNIKYWDTETGQ 390 (604)
Q Consensus 313 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~D--g~I~vWD~~t~~ 390 (604)
...+..+.|..+ ..+|..|+.|| .++|+...-.++... ......|.-+-|+. .+++..+.+ +.+++.++..+.
T Consensus 5 ~~ti~~~~~Nqd-~~~lsvGs~~G-yk~~~~~~~~k~~~~-~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~ 79 (391)
T KOG2110|consen 5 KPTINFIGFNQD-STLLSVGSKDG-YKIFSCSPFEKCFSK-DTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKT 79 (391)
T ss_pred Ccceeeeeeccc-eeEEEccCCCc-eeEEecCchHHhhcc-cCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCc
Confidence 445777778887 78888888887 578887443342221 12233455566654 466666554 459999999999
Q ss_pred EEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcC---cCCceeEEEEeCCCCEEEEE--eCCC
Q 007411 391 VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ---HLGAVNTITFVDSNRRFVTS--SDDK 465 (604)
Q Consensus 391 ~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~---h~~~V~~i~~sp~~~~l~sg--s~Dg 465 (604)
.++.+...+.+.++.++. +.|++.-.+. |+|||+++.+++.++.. +...+.++.+++.+.+++-= ...|
T Consensus 80 ~ICe~~fpt~IL~VrmNr-----~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~G 153 (391)
T KOG2110|consen 80 TICEIFFPTSILAVRMNR-----KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSG 153 (391)
T ss_pred eEEEEecCCceEEEEEcc-----ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCc
Confidence 999999999988888876 3355555444 99999999999888754 44456677777777787743 3468
Q ss_pred cEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCe-EEEEEcCCceeecccccccCcccccceEEEEEcCC
Q 007411 466 SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQ-ILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPD 544 (604)
Q Consensus 466 ~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~-I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spd 544 (604)
.|.+||+.+.+.+..+. .|.+.+.+++|+++|.+||++|..|+ |+||.+.++..+..+++ ......|.+++|+|+
T Consensus 154 dV~l~d~~nl~~v~~I~-aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRR---G~~~~~IySL~Fs~d 229 (391)
T KOG2110|consen 154 DVVLFDTINLQPVNTIN-AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRR---GTYPVSIYSLSFSPD 229 (391)
T ss_pred eEEEEEcccceeeeEEE-ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeC---CceeeEEEEEEECCC
Confidence 99999999999988887 79999999999999999999999987 78999999887755443 222567889999999
Q ss_pred CCEEEEEcCCCcEEEEeCC
Q 007411 545 GRFVMSGDGEGKCWFWDWK 563 (604)
Q Consensus 545 g~~L~sgs~dG~I~iwd~~ 563 (604)
+++|++.+..++|++|.+.
T Consensus 230 s~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 230 SQFLAASSNTETVHIFKLE 248 (391)
T ss_pred CCeEEEecCCCeEEEEEec
Confidence 9999999999999999875
No 190
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.69 E-value=1.1e-15 Score=159.20 Aligned_cols=242 Identities=17% Similarity=0.249 Sum_probs=179.9
Q ss_pred ceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEE
Q 007411 304 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKY 383 (604)
Q Consensus 304 ~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~v 383 (604)
.++++++||.+.|+|++|+.+ |.+++||+.|..|.||+-...+. ..+ .|...|.|+.|+|-...|++|+.. ..-+
T Consensus 44 ~llqtLKgHKDtVycVAys~d-GkrFASG~aDK~VI~W~~klEG~--LkY-SH~D~IQCMsFNP~~h~LasCsLs-dFgl 118 (1081)
T KOG1538|consen 44 TLLQPLKGHKDTVYCVAYAKD-GKRFASGSADKSVIIWTSKLEGI--LKY-SHNDAIQCMSFNPITHQLASCSLS-DFGL 118 (1081)
T ss_pred ccccccccccceEEEEEEccC-CceeccCCCceeEEEecccccce--eee-ccCCeeeEeecCchHHHhhhcchh-hccc
Confidence 678899999999999999999 99999999999999998733332 223 599999999999999999999873 5778
Q ss_pred EECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEc---CcCCceeEEEEeCCC-----
Q 007411 384 WDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYD---QHLGAVNTITFVDSN----- 455 (604)
Q Consensus 384 WD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~---~h~~~V~~i~~sp~~----- 455 (604)
|......+. .. .....++++++.. ++.+++.|..+|+|.+-+-. ++....+. +...+|.+++|+|..
T Consensus 119 WS~~qK~V~-K~--kss~R~~~CsWtn-DGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~ 193 (1081)
T KOG1538|consen 119 WSPEQKSVS-KH--KSSSRIICCSWTN-DGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRN 193 (1081)
T ss_pred cChhhhhHH-hh--hhheeEEEeeecC-CCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCcc
Confidence 887644332 22 2233344444443 34799999999999998543 43333333 467899999999863
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccc
Q 007411 456 RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGY 535 (604)
Q Consensus 456 ~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 535 (604)
..+++.....++.++.+.....-+.. .......|+.+.++|.+++.|+.|+.+.+|.-. +-.+..... ...+
T Consensus 194 di~aV~DW~qTLSFy~LsG~~Igk~r--~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-GvrLGTvg~-----~D~W 265 (1081)
T KOG1538|consen 194 DILAVADWGQTLSFYQLSGKQIGKDR--ALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD-GVRLGTVGE-----QDSW 265 (1081)
T ss_pred ceEEEEeccceeEEEEecceeecccc--cCCCCchhheeccCCcEEEEccCCCceEEEeec-CeEEeeccc-----ccee
Confidence 35777777777777776433222121 234456789999999999999999999999643 333322221 3578
Q ss_pred eEEEEEcCCCCEEEEEcCCCcEEEEeCC
Q 007411 536 ACQVNFSPDGRFVMSGDGEGKCWFWDWK 563 (604)
Q Consensus 536 v~~l~~spdg~~L~sgs~dG~I~iwd~~ 563 (604)
|..++..|++++++.|+.||+|-.|++-
T Consensus 266 IWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 266 IWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred EEEEEEccCCceEEEEEccCeeehhhhH
Confidence 9999999999999999999999999864
No 191
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=5.5e-16 Score=154.89 Aligned_cols=198 Identities=16% Similarity=0.314 Sum_probs=159.4
Q ss_pred EEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEee
Q 007411 317 SAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFS 396 (604)
Q Consensus 317 ~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~ 396 (604)
.+++|+.+ |..|++|+.||++|||++ .....+.....|...|.++.|+|||++|++.+.| ..+||++++|..+....
T Consensus 148 k~vaf~~~-gs~latgg~dg~lRv~~~-Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 148 KVVAFNGD-GSKLATGGTDGTLRVWEW-PSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT 224 (398)
T ss_pred eEEEEcCC-CCEeeeccccceEEEEec-CcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence 67899999 999999999999999998 5667777778899999999999999999999999 99999999997777665
Q ss_pred CCCc---ceEEEEccCCCCCcEEEEEE--cCCeEEEEeCCCCce-----EEEEcCcCCceeEEEEeCCCCEEEEEeCCCc
Q 007411 397 TGKI---PYVVKLNPDDDKQNILLAGM--SDKKIVQWDMNTKEI-----TQEYDQHLGAVNTITFVDSNRRFVTSSDDKS 466 (604)
Q Consensus 397 ~~~~---~~~~~~~~~~~~~~~lvsg~--~dg~I~iwD~~s~~~-----~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~ 466 (604)
.... ...+.|..++....+++++. .-+.|+.||+....- ......-...|++++++++|++++.|+.||.
T Consensus 225 ~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGs 304 (398)
T KOG0771|consen 225 PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGS 304 (398)
T ss_pred CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCc
Confidence 3322 23455555554444444443 346677776643211 1111123457999999999999999999999
Q ss_pred EEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 007411 467 LRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE 517 (604)
Q Consensus 467 I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~ 517 (604)
|.|++....+.+..+...|...|+.+.|+|+.+++++.+.+..+.+..+.-
T Consensus 305 Vai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 305 VAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999999999999999999999999999999999999999999987654
No 192
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.67 E-value=7.8e-15 Score=141.70 Aligned_cols=245 Identities=18% Similarity=0.258 Sum_probs=188.0
Q ss_pred EEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCC--eeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEE
Q 007411 307 HTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG--KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYW 384 (604)
Q Consensus 307 ~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~--~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vW 384 (604)
+.|.---.+|+|.+|+++ +..+|.+.....|.||...... +..+++..|...|+.|+|+|..+.|++|+.|+.-.||
T Consensus 4 ~~~~~~~~pitchAwn~d-rt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw 82 (361)
T KOG1523|consen 4 VVFHRLLEPITCHAWNSD-RTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVW 82 (361)
T ss_pred EEeeeccCceeeeeecCC-CceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccc
Confidence 344445678999999999 9999999999999999884333 6788999999999999999999999999999999999
Q ss_pred ECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCC
Q 007411 385 DTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDD 464 (604)
Q Consensus 385 D~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~D 464 (604)
....+. +-++...+..+...++++.|+|.++.|++||.-
T Consensus 83 ~~~~~~-----------------------------------------~WkptlvLlRiNrAAt~V~WsP~enkFAVgSga 121 (361)
T KOG1523|consen 83 TQPSGG-----------------------------------------TWKPTLVLLRINRAATCVKWSPKENKFAVGSGA 121 (361)
T ss_pred ccCCCC-----------------------------------------eeccceeEEEeccceeeEeecCcCceEEeccCc
Confidence 763211 111233444678899999999999999999999
Q ss_pred CcEEEEECCCCeE---EEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCce--------------eecc-ccc
Q 007411 465 KSLRVWEFGIPVV---IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF--------------QLNK-KKR 526 (604)
Q Consensus 465 g~I~iwdl~~~~~---~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~--------------~~~~-~~~ 526 (604)
..|.||-++.... .+.+..++...|.++.|+|++-+|++|+.|+..++|+.--+. .... ...
T Consensus 122 r~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E 201 (361)
T KOG1523|consen 122 RLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSE 201 (361)
T ss_pred cEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHh
Confidence 9999998865543 355666788899999999999999999999999999742110 0000 001
Q ss_pred ccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCe-eEEEEecCCCcEEEEEEecCCCCEEEEEeCC
Q 007411 527 FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCK-VFRTLKCHEGVCIGCEWHPLEQSKVATCGWD 597 (604)
Q Consensus 527 ~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~-~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~D 597 (604)
+. ...+++..+.|+|+|..|+-.+.|+.+.+-|..... .+..+....-+..++.|.. + ..++.+|.|
T Consensus 202 ~~--~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~is-e-~~vv~ag~~ 269 (361)
T KOG1523|consen 202 AS--SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWIS-E-NSVVAAGYD 269 (361)
T ss_pred hc--cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeec-C-CceeecCCC
Confidence 11 236789999999999999999999999999976654 3444444446778888875 2 345555555
No 193
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=1e-14 Score=145.84 Aligned_cols=196 Identities=19% Similarity=0.215 Sum_probs=149.4
Q ss_pred eEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEe
Q 007411 402 YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYI 481 (604)
Q Consensus 402 ~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~ 481 (604)
.++++..++ ..+++|+.||.+++|+..+...+.....|.+.|.++.|+|+++.|++.+.| ..+||+.+++..+...
T Consensus 148 k~vaf~~~g---s~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDG---SKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCCC---CEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence 566776654 579999999999999988888888888899999999999999999999999 8999999998666655
Q ss_pred e-cCCCCcccEEEEcCCC---CE--EEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCC
Q 007411 482 S-EPHMHSMPSISLHPNT---NW--LAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG 555 (604)
Q Consensus 482 ~-~~~~~~v~~l~~sp~g---~~--l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG 555 (604)
. ......+..+.|+.++ .+ ++.....+.|+.|++.....-...+..+.......+.+++.|++|++++.|+.+|
T Consensus 224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dG 303 (398)
T KOG0771|consen 224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDG 303 (398)
T ss_pred CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCC
Confidence 4 2334456677787766 22 3333344667777664322211111111111124678899999999999999999
Q ss_pred cEEEEeCCCCeeEEEEe-cCCCcEEEEEEecCCCCEEEEEeCCCcEEE
Q 007411 556 KCWFWDWKSCKVFRTLK-CHEGVCIGCEWHPLEQSKVATCGWDGLIKY 602 (604)
Q Consensus 556 ~I~iwd~~t~~~~~~l~-~h~~~V~~v~~sp~~~~~l~tgg~DG~I~v 602 (604)
.|.|++..+.++++..+ +|...|+.+.|+| +.+++++.+.|..+.|
T Consensus 304 sVai~~~~~lq~~~~vk~aH~~~VT~ltF~P-dsr~~~svSs~~~~~v 350 (398)
T KOG0771|consen 304 SVAIYDAKSLQRLQYVKEAHLGFVTGLTFSP-DSRYLASVSSDNEAAV 350 (398)
T ss_pred cEEEEEeceeeeeEeehhhheeeeeeEEEcC-CcCcccccccCCceeE
Confidence 99999999988877665 7999999999999 7778888888877655
No 194
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.67 E-value=2.3e-15 Score=143.32 Aligned_cols=215 Identities=18% Similarity=0.278 Sum_probs=169.5
Q ss_pred CcccCcceeEEec-CCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEec-----CCCCceeeEEEcc--CC
Q 007411 298 HCYIPKRLVHTWS-GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYM-----GHSKAVRDISFCN--DG 369 (604)
Q Consensus 298 ~~~~p~~~i~tl~-gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~-----~h~~~V~~l~fsp--dg 369 (604)
-.+.|-+++..|. .|-+.|.||.|.|+ +..|++-. |..|.+|++.+..+.+..+. .|....++-+|+| +|
T Consensus 107 S~~~tlE~v~~Ldteavg~i~cvew~Pn-s~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdg 184 (370)
T KOG1007|consen 107 SNSSTLECVASLDTEAVGKINCVEWEPN-SDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDG 184 (370)
T ss_pred cccchhhHhhcCCHHHhCceeeEEEcCC-CCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCcc
Confidence 4566677777776 57779999999998 66676655 88999999965554343332 3566788889999 78
Q ss_pred CEEEEEECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCC-ceEEEEcCcCCceeE
Q 007411 370 TKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNT 448 (604)
Q Consensus 370 ~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~-~~~~~~~~h~~~V~~ 448 (604)
+.+++.+ |+++..||+++.++...+...+...+..+.+++.++++|++++.||.|++||+|.- .+++++.+|...|.+
T Consensus 185 nqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~ 263 (370)
T KOG1007|consen 185 NQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWA 263 (370)
T ss_pred ceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEE
Confidence 8888765 79999999999999999988877777777777788899999999999999999864 688999999999999
Q ss_pred EEEeCC-CCEEEEEeCCCcEEEEECCCCe-----------------------------EEEEeecCCCCcccEEEEcCCC
Q 007411 449 ITFVDS-NRRFVTSSDDKSLRVWEFGIPV-----------------------------VIKYISEPHMHSMPSISLHPNT 498 (604)
Q Consensus 449 i~~sp~-~~~l~sgs~Dg~I~iwdl~~~~-----------------------------~~~~~~~~~~~~v~~l~~sp~g 498 (604)
+.|+|. .++|++|+.|..|.+|....-. .+.+ ...|..+|.+++|+.-.
T Consensus 264 VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~t-ydehEDSVY~~aWSsad 342 (370)
T KOG1007|consen 264 VRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLET-YDEHEDSVYALAWSSAD 342 (370)
T ss_pred EEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccc-ccccccceEEEeeccCC
Confidence 999986 4578899999999999763211 0111 23477889999998766
Q ss_pred CE-EEEEEcCCeEEEEEcC
Q 007411 499 NW-LAAQSLDNQILIYSTR 516 (604)
Q Consensus 499 ~~-l~s~s~Dg~I~iwd~~ 516 (604)
.+ ||+-+.||.+.|=.+.
T Consensus 343 PWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 343 PWIFASLSYDGRVIISSVP 361 (370)
T ss_pred CeeEEEeccCceEEeecCC
Confidence 54 6777999999886543
No 195
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.66 E-value=1.6e-15 Score=154.66 Aligned_cols=209 Identities=17% Similarity=0.251 Sum_probs=164.4
Q ss_pred CCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcceEEE
Q 007411 326 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVK 405 (604)
Q Consensus 326 g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~ 405 (604)
...|+.++.||.+.|-+- .++.-+.+..|.+.|.+-.|+|+|.-|++++.||.|++|.-...-..........++|++
T Consensus 75 ~d~~~i~s~DGkf~il~k--~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~ 152 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNK--SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCAR 152 (737)
T ss_pred cceEEEEcCCceEEEecc--cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEE
Confidence 467888999999999874 778888899999999999999999999999999999999854322222234567788999
Q ss_pred EccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCC
Q 007411 406 LNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPH 485 (604)
Q Consensus 406 ~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~ 485 (604)
|.|++. +++++.+ +.+.+=-+.....+...+.|.+-|.++.|++..+.+++|+.|-..+|||-...... ...+|
T Consensus 153 W~p~S~--~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf--~S~~~ 226 (737)
T KOG1524|consen 153 WAPNSN--SIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLF--TSAAE 226 (737)
T ss_pred ECCCCC--ceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccc--cCChh
Confidence 998765 4555544 56666666666667788899999999999999999999999999999996543322 23468
Q ss_pred CCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEE
Q 007411 486 MHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFW 560 (604)
Q Consensus 486 ~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iw 560 (604)
..+|++++|.|+ +.++++|. +++++ . ....+.|..++||+||..+++|+..|.+.+=
T Consensus 227 ey~ITSva~npd-~~~~v~S~-nt~R~---------------~-~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 227 EYAITSVAFNPE-KDYLLWSY-NTARF---------------S-SPRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred ccceeeeeeccc-cceeeeee-eeeee---------------c-CCCccceEEEEEcCCCceeeccccCceEEEe
Confidence 999999999999 66666663 23331 1 1124678889999999999999999987654
No 196
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.65 E-value=1.1e-14 Score=138.84 Aligned_cols=254 Identities=15% Similarity=0.249 Sum_probs=180.8
Q ss_pred eeeEEecCCCCceeeEEEcc---CCCEEEEEEC----CCcEEEEEC--CCCcEEEE--eeCCCcceEEEEccCCCCCcEE
Q 007411 348 KCMRTYMGHSKAVRDISFCN---DGTKFLTASY----DKNIKYWDT--ETGQVIRT--FSTGKIPYVVKLNPDDDKQNIL 416 (604)
Q Consensus 348 ~~~~~~~~h~~~V~~l~fsp---dg~~L~s~s~----Dg~I~vWD~--~t~~~i~~--~~~~~~~~~~~~~~~~~~~~~l 416 (604)
+.+..+..+ -.+.++.|+. ...+|+.|+. .+.|.|..+ ++++.+.. |....++.-+.|.|+..+..-=
T Consensus 36 ~eiy~Y~ap-~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pd 114 (364)
T KOG0290|consen 36 KEIYTYNAP-WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPD 114 (364)
T ss_pred ceEEEecCC-CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcc
Confidence 334444433 3567788874 3446777775 355666544 45555443 3455566778888876432222
Q ss_pred EEEEcCCeEEEEeCCCC--ce--EEE-----EcCcCCceeEEEEeC-CCCEEEEEeCCCcEEEEECCCCeE--EEEeecC
Q 007411 417 LAGMSDKKIVQWDMNTK--EI--TQE-----YDQHLGAVNTITFVD-SNRRFVTSSDDKSLRVWEFGIPVV--IKYISEP 484 (604)
Q Consensus 417 vsg~~dg~I~iwD~~s~--~~--~~~-----~~~h~~~V~~i~~sp-~~~~l~sgs~Dg~I~iwdl~~~~~--~~~~~~~ 484 (604)
+.++.+..+++|.+... +. ... -..+..+++++.|+. +.++|.++|-|-+..|||+.++.. +++....
T Consensus 115 lLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIA 194 (364)
T KOG0290|consen 115 LLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIA 194 (364)
T ss_pred hhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEe
Confidence 33344568999988732 11 111 124667899999986 567889999999999999998643 5555567
Q ss_pred CCCcccEEEEcCCC-CEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcC-CCCEEEEEcC-CCcEEEEe
Q 007411 485 HMHSMPSISLHPNT-NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP-DGRFVMSGDG-EGKCWFWD 561 (604)
Q Consensus 485 ~~~~v~~l~~sp~g-~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~L~sgs~-dG~I~iwd 561 (604)
|...|..++|...+ ..|++.+.||.+++||++....-. ..+.+.........++|++ |-+|+|+-.. ...|.|.|
T Consensus 195 HDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHST--IIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLD 272 (364)
T KOG0290|consen 195 HDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHST--IIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILD 272 (364)
T ss_pred cCcceeEEEeccCccceEEEecCCCcEEEEEecccccce--EEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEE
Confidence 99999999999854 689999999999999998754322 2233333245677788987 4567776554 45799999
Q ss_pred CCC-CeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007411 562 WKS-CKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 562 ~~t-~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
++. +.++..++.|.+.|++++|.|...+.|.|||.|..+.|||
T Consensus 273 iR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWD 316 (364)
T KOG0290|consen 273 IRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWD 316 (364)
T ss_pred ecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEe
Confidence 986 6789999999999999999999999999999999999998
No 197
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=4.6e-15 Score=144.42 Aligned_cols=255 Identities=15% Similarity=0.286 Sum_probs=180.2
Q ss_pred ceeEEecCCCCCeEEEEEcCC-CCCEEEEEECCCcEEEEecCCCCe-eeEEecCCC-CceeeEEEccCCCEEEEEEC---
Q 007411 304 RLVHTWSGHTKGVSAIRFFPK-YGHLILSAGMDTKVKIWDVVNSGK-CMRTYMGHS-KAVRDISFCNDGTKFLTASY--- 377 (604)
Q Consensus 304 ~~i~tl~gH~~~V~~l~fsp~-~g~~L~sgs~Dg~I~IWd~~~~~~-~~~~~~~h~-~~V~~l~fspdg~~L~s~s~--- 377 (604)
+.+..|++|...++.++|... .++.+.+|+.||+|++||++...+ ....+.+|. .+..|++.+..++.+++|..
T Consensus 61 ~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~ 140 (376)
T KOG1188|consen 61 QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTR 140 (376)
T ss_pred hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEecccccc
Confidence 477889999999999999874 589999999999999999954443 333445555 56777777767777877753
Q ss_pred -CCcEEEEECCCCcE-EEEeeC--CCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCc----eEEEEcCcCCceeEE
Q 007411 378 -DKNIKYWDTETGQV-IRTFST--GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE----ITQEYDQHLGAVNTI 449 (604)
Q Consensus 378 -Dg~I~vWD~~t~~~-i~~~~~--~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~----~~~~~~~h~~~V~~i 449 (604)
+-.|.+||++..+. +..+.. ...+.+++|+|... ++|++|+.||.|.+||+.... ++.++ .|...|.++
T Consensus 141 s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~p--nlLlSGSvDGLvnlfD~~~d~EeDaL~~vi-N~~sSI~~i 217 (376)
T KOG1188|consen 141 SDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDP--NLLLSGSVDGLVNLFDTKKDNEEDALLHVI-NHGSSIHLI 217 (376)
T ss_pred CceEEEEEEeccccchhhhhhhhccCcceeEEecCCCC--CeEEeecccceEEeeecCCCcchhhHHHhh-cccceeeee
Confidence 67899999998876 666544 34567777887654 899999999999999997542 22333 477889999
Q ss_pred EEeCCC-CEEEEEeCCCcEEEEECCCCeEEEEeecCCCC-----------cccEEEEcCCCCEEEEEEc-CCeEEEEEcC
Q 007411 450 TFVDSN-RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMH-----------SMPSISLHPNTNWLAAQSL-DNQILIYSTR 516 (604)
Q Consensus 450 ~~sp~~-~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~-----------~v~~l~~sp~g~~l~s~s~-Dg~I~iwd~~ 516 (604)
.|..++ +.|.+-+...+..+|+++.+.....+..+... .+...-...+...+++++. -|...++-+.
T Consensus 218 gw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~ 297 (376)
T KOG1188|consen 218 GWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLV 297 (376)
T ss_pred eeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEee
Confidence 999776 46888888999999999877654444322110 0111111223445555554 4555555443
Q ss_pred ---CceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeC
Q 007411 517 ---ERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 562 (604)
Q Consensus 517 ---~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~ 562 (604)
.+........+.++. ...|.++.|...+.++++|+.||.+.+|..
T Consensus 298 ~~~s~~~~~~~a~l~g~~-~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 298 DTSSGSLLTEPAILQGGH-EEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred ecccccccCccccccCCc-HHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 333344444555532 456777888888999999999999999985
No 198
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=1.2e-13 Score=149.39 Aligned_cols=283 Identities=17% Similarity=0.268 Sum_probs=195.1
Q ss_pred CCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCC---CEEEEEECCCcEEEEECC
Q 007411 311 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDG---TKFLTASYDKNIKYWDTE 387 (604)
Q Consensus 311 gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg---~~L~s~s~Dg~I~vWD~~ 387 (604)
|-+..-..-.|+++ ++.++.+. +..|.||.. .++.++..+.+|..++..+.+.|.. .++++++.||.|++||..
T Consensus 14 g~n~~~~~avfSnD-~k~l~~~~-~~~V~VyS~-~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~ 90 (792)
T KOG1963|consen 14 GRNGNKSPAVFSND-AKFLFLCT-GNFVKVYST-ATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWS 90 (792)
T ss_pred cccceecccccccC-CcEEEEee-CCEEEEEec-chHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCC
Confidence 33333334457888 66666555 468999999 7999999999999999999998843 467899999999999999
Q ss_pred CCcEEEEeeCCCcceEEEEccCCCCCcEEE-EEEcCCeEEE-EeCCCCce-----EEEE--------cCcCCceeEEEEe
Q 007411 388 TGQVIRTFSTGKIPYVVKLNPDDDKQNILL-AGMSDKKIVQ-WDMNTKEI-----TQEY--------DQHLGAVNTITFV 452 (604)
Q Consensus 388 t~~~i~~~~~~~~~~~~~~~~~~~~~~~lv-sg~~dg~I~i-wD~~s~~~-----~~~~--------~~h~~~V~~i~~s 452 (604)
.+..+.++.....+.+..+.+.--....++ .+..+..+.. ........ +.++ ..|.. -.+|.++
T Consensus 91 ~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~ 169 (792)
T KOG1963|consen 91 DGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDN 169 (792)
T ss_pred CcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEc
Confidence 999999998877776665533211111122 2222221111 11111111 1111 12222 4677788
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCeE---EEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCC-ceeeccccccc
Q 007411 453 DSNRRFVTSSDDKSLRVWEFGIPVV---IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE-RFQLNKKKRFA 528 (604)
Q Consensus 453 p~~~~l~sgs~Dg~I~iwdl~~~~~---~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~-~~~~~~~~~~~ 528 (604)
+.+.+....- +..+.+|....... ...+...|...+++.++||++++++++..||+|.+|.--. ...-.....+.
T Consensus 170 ~~ge~~~i~~-~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lH 248 (792)
T KOG1963|consen 170 NSGEFKGIVH-MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLH 248 (792)
T ss_pred CCceEEEEEE-eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEE
Confidence 7776665554 56688998876441 1122234666689999999999999999999999996433 11111222233
Q ss_pred CcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEE
Q 007411 529 GHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKY 602 (604)
Q Consensus 529 ~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~v 602 (604)
-| ...|.+++|+++|.+|++|+..|.+.+|.+.+++ .+-|..-.++|..+.++| ++.+.+.+..|..|.+
T Consensus 249 WH--~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~-ds~~~sl~~~DNqI~l 318 (792)
T KOG1963|consen 249 WH--HDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSP-DSDLYSLVLEDNQIHL 318 (792)
T ss_pred ec--ccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcC-CCCeEEEEecCceEEE
Confidence 33 5678999999999999999999999999999988 455566778999999999 5667777777888765
No 199
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=9.5e-14 Score=143.16 Aligned_cols=277 Identities=13% Similarity=0.153 Sum_probs=203.7
Q ss_pred CCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCC--CCceeeEEEccCCCEEEEEECCCcEEEEECCC
Q 007411 311 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGH--SKAVRDISFCNDGTKFLTASYDKNIKYWDTET 388 (604)
Q Consensus 311 gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h--~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t 388 (604)
+|...-+.|..+|++..++++|..--.|++||+. .- .+ .+.-| ...|.-.-++.|-..++.-..|++|-+..--
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydla-nL-SL-KFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~- 124 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLA-NL-SL-KFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY- 124 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcc-cc-ee-eeeecccccceeEEEeccchhhheEeecCceeeehhhc-
Confidence 5777889999999955567788889999999993 22 22 22233 3345555556566666667778888765422
Q ss_pred CcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEE
Q 007411 389 GQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLR 468 (604)
Q Consensus 389 ~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~ 468 (604)
-....+..+.....++++... .-|++++....|+-+++..|..+..+....+.++++.+++...+|++|+.+|.|-
T Consensus 125 -G~hy~~RIP~~GRDm~y~~~s---cDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VE 200 (703)
T KOG2321|consen 125 -GRHYRTRIPKFGRDMKYHKPS---CDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVE 200 (703)
T ss_pred -CeeeeeecCcCCccccccCCC---ccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEE
Confidence 122223333333444444322 2266666678899999999999999988889999999999999999999999999
Q ss_pred EEECCCCeEEEEeecC-----C-----CCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEE
Q 007411 469 VWEFGIPVVIKYISEP-----H-----MHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQ 538 (604)
Q Consensus 469 iwdl~~~~~~~~~~~~-----~-----~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 538 (604)
+||.+....+..+... + ...|+++.|+.+|-.+++|+.+|.|.|||++....+. ...|....+|..
T Consensus 201 fwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~----~kdh~~e~pi~~ 276 (703)
T KOG2321|consen 201 FWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLL----VKDHGYELPIKK 276 (703)
T ss_pred EecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCcee----ecccCCccceee
Confidence 9999887666555322 1 2249999999999999999999999999999876553 344555677888
Q ss_pred EEEcCC--CCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEE
Q 007411 539 VNFSPD--GRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKY 602 (604)
Q Consensus 539 l~~spd--g~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~v 602 (604)
+.|.+. +..|++. ....++|||-.+|+....+.... .+..+++.| ++.+++++-.++.+..
T Consensus 277 l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~-~lND~C~~p-~sGm~f~Ane~~~m~~ 339 (703)
T KOG2321|consen 277 LDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTS-DLNDFCFVP-GSGMFFTANESSKMHT 339 (703)
T ss_pred ecccccCCCceEEec-chHHhhhcccccCCceeeccccC-CcCceeeec-CCceEEEecCCCccee
Confidence 999775 4455554 35689999999999999887544 489999999 7779999887776543
No 200
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.62 E-value=6e-15 Score=138.92 Aligned_cols=276 Identities=16% Similarity=0.219 Sum_probs=186.5
Q ss_pred ccCccccccceeecCCCccccCCCCcccCcceeEEec-CCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEE
Q 007411 274 GKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWS-GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRT 352 (604)
Q Consensus 274 ~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~-gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~ 352 (604)
.....+.++| +..........-|++...+.+..|+ .|+..|+.+.--|+ ..|.+-+.|+.+.+|++. .+..+
T Consensus 18 ~s~~fqa~~r--L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~--d~l~tqgRd~~L~lw~ia-~s~~i-- 90 (323)
T KOG0322|consen 18 TSVLFQANER--LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN--DSLDTQGRDPLLILWTIA-YSAFI-- 90 (323)
T ss_pred eehhhccchh--hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC--cchhhcCCCceEEEEEcc-CcceE--
Confidence 3444555566 3344444445568888888888998 57889999999886 578888999999999993 33222
Q ss_pred ecCCCCceeeEEEccC-----CC----EEEEEECCC-cEEEEECCCCcEEEEeeC---CC--cceEEEEccCCCCCcEEE
Q 007411 353 YMGHSKAVRDISFCND-----GT----KFLTASYDK-NIKYWDTETGQVIRTFST---GK--IPYVVKLNPDDDKQNILL 417 (604)
Q Consensus 353 ~~~h~~~V~~l~fspd-----g~----~L~s~s~Dg-~I~vWD~~t~~~i~~~~~---~~--~~~~~~~~~~~~~~~~lv 417 (604)
.-|+-.++++.|++. ++ .++.-+... .+.+-|......++.... .+ .+.+..+........+++
T Consensus 91 -~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lll 169 (323)
T KOG0322|consen 91 -SIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLL 169 (323)
T ss_pred -EEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEE
Confidence 234455666666542 11 111111100 011222211112222111 12 223333333344556788
Q ss_pred EEEcCCeEEEEeCCCCce----------EEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCe---EEEEeecC
Q 007411 418 AGMSDKKIVQWDMNTKEI----------TQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPV---VIKYISEP 484 (604)
Q Consensus 418 sg~~dg~I~iwD~~s~~~----------~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~---~~~~~~~~ 484 (604)
+|..+|.+.+||+.++.. ...+..|..+|.++.+.+.-..=++|+.+..+..|++.... .+......
T Consensus 170 aGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~l 249 (323)
T KOG0322|consen 170 AGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITL 249 (323)
T ss_pred EeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEe
Confidence 999999999999999733 33445699999999999877778888988999999986431 11111112
Q ss_pred CCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeC
Q 007411 485 HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 562 (604)
Q Consensus 485 ~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~ 562 (604)
....+..+.+-||++.+|+++.|+.|+||+.++...+ ..+..| ...|.+++|+|+..++|+++.|++|.+|++
T Consensus 250 knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pL---AVLkyH--sagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 250 KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPL---AVLKYH--SAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred cCCCccceEEccCCcEEeecccCCcEEEEEeccCCch---hhhhhh--hcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 4456888999999999999999999999999886554 455556 467889999999999999999999999986
No 201
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.62 E-value=2.5e-15 Score=151.27 Aligned_cols=265 Identities=15% Similarity=0.206 Sum_probs=205.7
Q ss_pred CCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEE
Q 007411 313 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVI 392 (604)
Q Consensus 313 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i 392 (604)
.-+-+.+.++.+ |..|+.|+.-|.|..+|. .+.++...+. -...|.++.|-.+.++|+++- ...+.|||- .|..+
T Consensus 129 eFGPY~~~ytrn-GrhlllgGrKGHlAa~Dw-~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~-~GtEl 203 (545)
T KOG1272|consen 129 EFGPYHLDYTRN-GRHLLLGGRKGHLAAFDW-VTKKLHFEIN-VMETVRDVTFLHNEQFFAVAQ-KKYVYVYDN-NGTEL 203 (545)
T ss_pred ccCCeeeeecCC-ccEEEecCCccceeeeec-ccceeeeeee-hhhhhhhhhhhcchHHHHhhh-hceEEEecC-CCcEE
Confidence 345677888888 999999999999999999 5666666554 456799999998888777775 478999994 57777
Q ss_pred EEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEEC
Q 007411 393 RTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEF 472 (604)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl 472 (604)
..+.......-+.|.|.. .+|++++..|.+.--|+.+|+++..+..-.+.+..++-+|-+-.+-+|...|+|.+|.-
T Consensus 204 HClk~~~~v~rLeFLPyH---fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP 280 (545)
T KOG1272|consen 204 HCLKRHIRVARLEFLPYH---FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSP 280 (545)
T ss_pred eehhhcCchhhhcccchh---heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCC
Confidence 777777777777777754 67888889999999999999999999988999999999999999999999999999999
Q ss_pred CCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEc
Q 007411 473 GIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD 552 (604)
Q Consensus 473 ~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs 552 (604)
....++..+. .|.++|.+|++.++|.|+++.+.|..++|||++....+..... ......++||..| +||.+-
T Consensus 281 ~skePLvKiL-cH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t------p~~a~~ls~Sqkg-lLA~~~ 352 (545)
T KOG1272|consen 281 NSKEPLVKIL-CHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT------PHPASNLSLSQKG-LLALSY 352 (545)
T ss_pred CCcchHHHHH-hcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec------CCCcccccccccc-ceeeec
Confidence 8888877765 4999999999999999999999999999999998665443332 1234458888776 444443
Q ss_pred CCCcEEEEeC-CC--CeeEEEEecC--CCcEEEEEEecCCCCEEEEEe
Q 007411 553 GEGKCWFWDW-KS--CKVFRTLKCH--EGVCIGCEWHPLEQSKVATCG 595 (604)
Q Consensus 553 ~dG~I~iwd~-~t--~~~~~~l~~h--~~~V~~v~~sp~~~~~l~tgg 595 (604)
...|.||.= -. +.....+..| .++|.++.|.|. ...|-.|-
T Consensus 353 -G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~-EDvLGIGH 398 (545)
T KOG1272|consen 353 -GDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPY-EDVLGIGH 398 (545)
T ss_pred -CCeeeeehhhhcCCCCCCcchhhhccCcccccceeccH-HHeeeccc
Confidence 447899942 22 1222222223 348899999994 44444443
No 202
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.61 E-value=1.5e-12 Score=128.31 Aligned_cols=251 Identities=15% Similarity=0.252 Sum_probs=179.6
Q ss_pred eEEEEEcCCCCCEEEEEECC--CcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEE
Q 007411 316 VSAIRFFPKYGHLILSAGMD--TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIR 393 (604)
Q Consensus 316 V~~l~fsp~~g~~L~sgs~D--g~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~ 393 (604)
|.-+-|+. .++|..+.+ ..+++.++ ..+..+..+. ....|.+|.++.+ +|+++-.+ .|.|||+++.+.+.
T Consensus 49 IvEmLFSS---SLvaiV~~~qpr~Lkv~~~-Kk~~~ICe~~-fpt~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLh 120 (391)
T KOG2110|consen 49 IVEMLFSS---SLVAIVSIKQPRKLKVVHF-KKKTTICEIF-FPTSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLH 120 (391)
T ss_pred EEEeeccc---ceeEEEecCCCceEEEEEc-ccCceEEEEe-cCCceEEEEEccc--eEEEEEcc-cEEEEecccceeeh
Confidence 55555653 466666554 34888888 4444454443 4567999999754 67777654 49999999999999
Q ss_pred EeeCC--CcceEEEEccCCCCCcEEEEEE-cCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCc-EEE
Q 007411 394 TFSTG--KIPYVVKLNPDDDKQNILLAGM-SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKS-LRV 469 (604)
Q Consensus 394 ~~~~~--~~~~~~~~~~~~~~~~~lvsg~-~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~-I~i 469 (604)
++... +....++++++..+..+.+-++ ..|.|++||+.+-+.+..+..|.+++.|++|+++|.+|+++|+.|+ |||
T Consensus 121 TI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRV 200 (391)
T KOG2110|consen 121 TIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRV 200 (391)
T ss_pred hhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEE
Confidence 98765 4455788888765533333333 3589999999999999999999999999999999999999999997 799
Q ss_pred EECCCCeEEEEeecCC-CCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeccc------------------------
Q 007411 470 WEFGIPVVIKYISEPH-MHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKK------------------------ 524 (604)
Q Consensus 470 wdl~~~~~~~~~~~~~-~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~------------------------ 524 (604)
|.+..++.+..+..+. ...|.+++|+|++.+|++.+..++|.+|.+........-
T Consensus 201 f~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V 280 (391)
T KOG2110|consen 201 FSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQV 280 (391)
T ss_pred EEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhh
Confidence 9999999888886543 345889999999999999999999999988643210000
Q ss_pred -------ccccC-ccc-cc--ceEEEEEcCCCCEEEEEcCCCcEEEEeCCC--CeeEEEEecC
Q 007411 525 -------KRFAG-HIV-AG--YACQVNFSPDGRFVMSGDGEGKCWFWDWKS--CKVFRTLKCH 574 (604)
Q Consensus 525 -------~~~~~-~~~-~~--~v~~l~~spdg~~L~sgs~dG~I~iwd~~t--~~~~~~l~~h 574 (604)
+.|.. +.. .+ .++.+.-.+....+..++.||.++.|.+.. |.....++.|
T Consensus 281 ~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~~gGec~lik~h 343 (391)
T KOG2110|consen 281 SSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPKEGGECALIKRH 343 (391)
T ss_pred hhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCCCCceeEEEEee
Confidence 00000 000 01 222233234778899999999999998753 4444455544
No 203
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=4.4e-13 Score=144.22 Aligned_cols=235 Identities=12% Similarity=0.106 Sum_probs=161.6
Q ss_pred CcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEEC---CCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCC
Q 007411 336 TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASY---DKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDK 412 (604)
Q Consensus 336 g~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~---Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~ 412 (604)
..|.+||. ++...+.+..+...+.+.+|+|||+.|+..+. +..|.+|++.+++...............|+|++.
T Consensus 179 ~~l~~~d~--dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~- 255 (429)
T PRK03629 179 YELRVSDY--DGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS- 255 (429)
T ss_pred eeEEEEcC--CCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCC-
Confidence 36888887 34334445567778999999999999987653 3579999999887554433333334567777553
Q ss_pred CcEEEEEEcCC--eEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCC-Cc--EEEEECCCCeEEEEeecCCCC
Q 007411 413 QNILLAGMSDK--KIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDD-KS--LRVWEFGIPVVIKYISEPHMH 487 (604)
Q Consensus 413 ~~~lvsg~~dg--~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~D-g~--I~iwdl~~~~~~~~~~~~~~~ 487 (604)
.++++...+| .|++||+.+++..+.. .+...+....|+|+++.|+.++.+ +. |.++|+..+... .+.. ...
T Consensus 256 -~La~~~~~~g~~~I~~~d~~tg~~~~lt-~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~-~~~ 331 (429)
T PRK03629 256 -KLAFALSKTGSLNLYVMDLASGQIRQVT-DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITW-EGS 331 (429)
T ss_pred -EEEEEEcCCCCcEEEEEECCCCCEEEcc-CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eeec-CCC
Confidence 4555545454 5999999988765443 445567889999999998877764 44 555566655433 3322 333
Q ss_pred cccEEEEcCCCCEEEEEEcC---CeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCc---EEEEe
Q 007411 488 SMPSISLHPNTNWLAAQSLD---NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGK---CWFWD 561 (604)
Q Consensus 488 ~v~~l~~sp~g~~l~s~s~D---g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~---I~iwd 561 (604)
......|+|+|++|+..+.+ ..|.+||+.++.... +. .. .......|+|||++|+.++.++. +.+++
T Consensus 332 ~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt---~~---~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~ 404 (429)
T PRK03629 332 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LT---DT---FLDETPSIAPNGTMVIYSSSQGMGSVLNLVS 404 (429)
T ss_pred CccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eC---CC---CCCCCceECCCCCEEEEEEcCCCceEEEEEE
Confidence 45678999999999887654 358889987664321 11 11 11224789999999998887764 67777
Q ss_pred CCCCeeEEEEecCCCcEEEEEEec
Q 007411 562 WKSCKVFRTLKCHEGVCIGCEWHP 585 (604)
Q Consensus 562 ~~t~~~~~~l~~h~~~V~~v~~sp 585 (604)
+ +|.....+.+|.+.+...+|+|
T Consensus 405 ~-~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 405 T-DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred C-CCCCeEECccCCCCcCCcccCC
Confidence 6 5666677888888899999998
No 204
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.60 E-value=1.3e-12 Score=136.83 Aligned_cols=276 Identities=17% Similarity=0.194 Sum_probs=179.2
Q ss_pred CCEEE-EEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcceEE
Q 007411 326 GHLIL-SAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVV 404 (604)
Q Consensus 326 g~~L~-sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~ 404 (604)
+++++ +-..++.|.|.|. .+.+.+..+......-..+.|+|||+++++++.||.|.++|+.+++.+.++..+..+..+
T Consensus 5 ~~l~~V~~~~~~~v~viD~-~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i 83 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDG-ATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGI 83 (369)
T ss_dssp GGEEEEEEGGGTEEEEEET-TT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEE
T ss_pred ccEEEEEecCCCEEEEEEC-CCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceE
Confidence 34554 4556899999999 678888888765554455789999999999999999999999999999999999999999
Q ss_pred EEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCc-------CCceeEEEEeCCCCEEEEEeC-CCcEEEEECCCCe
Q 007411 405 KLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQH-------LGAVNTITFVDSNRRFVTSSD-DKSLRVWEFGIPV 476 (604)
Q Consensus 405 ~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h-------~~~V~~i~~sp~~~~l~sgs~-Dg~I~iwdl~~~~ 476 (604)
.+++++. .++++....+.+.++|.++.+++..+... ...+..|..++....++..-. .+.|.+.|+....
T Consensus 84 ~~s~DG~--~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~ 161 (369)
T PF02239_consen 84 AVSPDGK--YVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPK 161 (369)
T ss_dssp EE--TTT--EEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSS
T ss_pred EEcCCCC--EEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccc
Confidence 9998653 44445567899999999999998887543 346778888888886666655 4888888987654
Q ss_pred EEEEeecCCCCcccEEEEcCCCCEEEEEE-cCCeEEEEEcCCceeecccccc---------------------cCcc---
Q 007411 477 VIKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRF---------------------AGHI--- 531 (604)
Q Consensus 477 ~~~~~~~~~~~~v~~l~~sp~g~~l~s~s-~Dg~I~iwd~~~~~~~~~~~~~---------------------~~~~--- 531 (604)
.+...............|+|++++++++. .++.|-++|..++........- ..+.
T Consensus 162 ~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~ 241 (369)
T PF02239_consen 162 NLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYF 241 (369)
T ss_dssp CEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSS
T ss_pred ccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccce
Confidence 43322222445567889999999887754 4577888887765433211100 0000
Q ss_pred -------------------------cccceEEEEEcCCCCEEEEE----cCCCcEEEEeCCCCeeEEEEecCC-CcEEEE
Q 007411 532 -------------------------VAGYACQVNFSPDGRFVMSG----DGEGKCWFWDWKSCKVFRTLKCHE-GVCIGC 581 (604)
Q Consensus 532 -------------------------~~~~v~~l~~spdg~~L~sg----s~dG~I~iwd~~t~~~~~~l~~h~-~~V~~v 581 (604)
..+.-.-+..+|++++|++. ...+.|.++|..+.+.+..+.... ..+..+
T Consensus 242 ~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ 321 (369)
T PF02239_consen 242 AIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHM 321 (369)
T ss_dssp EEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEE
T ss_pred ecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEecc
Confidence 00111336779999999988 456899999999998888776332 358999
Q ss_pred EEecCCCCEEEEEeCCC-cEEEeC
Q 007411 582 EWHPLEQSKVATCGWDG-LIKYWD 604 (604)
Q Consensus 582 ~~sp~~~~~l~tgg~DG-~I~vWD 604 (604)
.|++++....+|.-..+ .|.|||
T Consensus 322 ef~~dG~~v~vS~~~~~~~i~v~D 345 (369)
T PF02239_consen 322 EFNPDGKEVWVSVWDGNGAIVVYD 345 (369)
T ss_dssp EE-TTSSEEEEEEE--TTEEEEEE
T ss_pred EECCCCCEEEEEEecCCCEEEEEE
Confidence 99995544444444444 699886
No 205
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=1.3e-13 Score=136.00 Aligned_cols=294 Identities=14% Similarity=0.181 Sum_probs=213.5
Q ss_pred hccCCCCCCccccCcceeeccCccccccceeecCCCccccCCCCcccCcceeEEe-cCCCCCeEEEEEcCCCCCEEEEEE
Q 007411 255 KGNAGGEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTW-SGHTKGVSAIRFFPKYGHLILSAG 333 (604)
Q Consensus 255 ~~~~~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl-~gH~~~V~~l~fsp~~g~~L~sgs 333 (604)
.++-|......+.....|+.+++.|..+|.|.....-. .-.| +++... ..|...|.|++|... ...|++|+
T Consensus 53 ~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~------~k~~-KPI~~~~~~H~SNIF~L~F~~~-N~~~~SG~ 124 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMV------RKTP-KPIGVMEHPHRSNIFSLEFDLE-NRFLYSGE 124 (609)
T ss_pred hhhccccceeeeccCCeEEeecCCcceeeeechHHHHh------hcCC-CCceeccCccccceEEEEEccC-CeeEecCC
Confidence 35567788888888899999999999999996532211 1122 233332 346789999999987 88999999
Q ss_pred CCCcEEEEecCCCCeeeEEecC--CCCceeeEEEccCCCEEEEEECCCcEEEEECCCCc----EEEEeeCCCcceEEEEc
Q 007411 334 MDTKVKIWDVVNSGKCMRTYMG--HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ----VIRTFSTGKIPYVVKLN 407 (604)
Q Consensus 334 ~Dg~I~IWd~~~~~~~~~~~~~--h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~----~i~~~~~~~~~~~~~~~ 407 (604)
.+++|.+.|+ .+.+.+..+.. ..+.|+.+..+|..+.|++.+.++.|.+||.+... ++.....+...+.+.|+
T Consensus 125 ~~~~VI~HDi-Et~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~ 203 (609)
T KOG4227|consen 125 RWGTVIKHDI-ETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFH 203 (609)
T ss_pred CcceeEeeec-ccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeec
Confidence 9999999999 56666665532 23489999999999999999999999999997654 44444556666778888
Q ss_pred cCCCCCcEEEEEEcCCeEEEEeCCCCc-eEEEE------cCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 007411 408 PDDDKQNILLAGMSDKKIVQWDMNTKE-ITQEY------DQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKY 480 (604)
Q Consensus 408 ~~~~~~~~lvsg~~dg~I~iwD~~s~~-~~~~~------~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~ 480 (604)
|... .+|++.+..+.+-+||++... .+..+ ......-.++.|+|+|+.|++--....-.+||+....+...
T Consensus 204 P~~P--~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~ 281 (609)
T KOG4227|consen 204 PETP--ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVL 281 (609)
T ss_pred CCCc--eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeE
Confidence 8655 789999999999999998643 12111 11122336789999999999887777777889877555443
Q ss_pred eecCC------CCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCce--------------------eecccccccCccccc
Q 007411 481 ISEPH------MHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF--------------------QLNKKKRFAGHIVAG 534 (604)
Q Consensus 481 ~~~~~------~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~--------------------~~~~~~~~~~~~~~~ 534 (604)
..... ...+.+++|.-+- .+++|+.+-.|++|.+.... .-..+..++|| ..
T Consensus 282 k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGH--RS 358 (609)
T KOG4227|consen 282 KSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGH--RS 358 (609)
T ss_pred eccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecc--cc
Confidence 33211 1236677776544 48999999999999874311 11123345666 56
Q ss_pred ceEEEEEcCCCCEEEEEcCCCcEEEEeC
Q 007411 535 YACQVNFSPDGRFVMSGDGEGKCWFWDW 562 (604)
Q Consensus 535 ~v~~l~~spdg~~L~sgs~dG~I~iwd~ 562 (604)
.+..+.|+|...+|++.+-...++||.-
T Consensus 359 v~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 359 VPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred cccceeecCCcceEeccchhhheecccc
Confidence 6788999999999999999999999963
No 206
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=2e-14 Score=147.18 Aligned_cols=219 Identities=23% Similarity=0.406 Sum_probs=164.1
Q ss_pred EEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcc--eEEEEccCCCCCcEEEEEEcCCeEEEE
Q 007411 351 RTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP--YVVKLNPDDDKQNILLAGMSDKKIVQW 428 (604)
Q Consensus 351 ~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~--~~~~~~~~~~~~~~lvsg~~dg~I~iw 428 (604)
..+.||++.|+|+.|+.+|.+|++||.|-.+.|||.-..+.+..+..+|.. .++.|.|... ..++++|..|..|+++
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tn-nriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTN-NRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCC-CeEEEeccCcceEEEE
Confidence 457899999999999999999999999999999999999999999888765 4566777654 4789999999999999
Q ss_pred eCCC----------CceEEEEcCcCCceeEEEEeCCC-CEEEEEeCCCcEEEEECCCCeEEEEee---------cCCCCc
Q 007411 429 DMNT----------KEITQEYDQHLGAVNTITFVDSN-RRFVTSSDDKSLRVWEFGIPVVIKYIS---------EPHMHS 488 (604)
Q Consensus 429 D~~s----------~~~~~~~~~h~~~V~~i~~sp~~-~~l~sgs~Dg~I~iwdl~~~~~~~~~~---------~~~~~~ 488 (604)
|+.. .+....+..|...|..|+..|++ +.|.+++.||+|+-+|++.+.....-. .+..-.
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie 202 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE 202 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence 9984 23445567789999999999988 789999999999999998753221110 112234
Q ss_pred ccEEEEcCC-CCEEEEEEcCCeEEEEEcCCceee--------cc-------cc-cccCcc-c-----ccc---eEEEEEc
Q 007411 489 MPSISLHPN-TNWLAAQSLDNQILIYSTRERFQL--------NK-------KK-RFAGHI-V-----AGY---ACQVNFS 542 (604)
Q Consensus 489 v~~l~~sp~-g~~l~s~s~Dg~I~iwd~~~~~~~--------~~-------~~-~~~~~~-~-----~~~---v~~l~~s 542 (604)
..++.++|. ..+|++|+.|-..++||.+..... .. .. -..+|. + ..+ ++-++|+
T Consensus 203 lk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfn 282 (758)
T KOG1310|consen 203 LKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFN 282 (758)
T ss_pred eeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEEC
Confidence 678899996 468999999999999995321100 00 00 011222 1 111 4568899
Q ss_pred CCCCEEEEEcCCCcEEEEeCCCCeeEEE
Q 007411 543 PDGRFVMSGDGEGKCWFWDWKSCKVFRT 570 (604)
Q Consensus 543 pdg~~L~sgs~dG~I~iwd~~t~~~~~~ 570 (604)
|+|.-|++.-..-.|+++|+..++....
T Consensus 283 pNGtElLvs~~gEhVYlfdvn~~~~~~~ 310 (758)
T KOG1310|consen 283 PNGTELLVSWGGEHVYLFDVNEDKSPTP 310 (758)
T ss_pred CCCcEEEEeeCCeEEEEEeecCCCCcee
Confidence 9998877776666899999987765433
No 207
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.57 E-value=1.7e-14 Score=149.54 Aligned_cols=232 Identities=17% Similarity=0.237 Sum_probs=164.7
Q ss_pred EECCCcEEEEecCCCCeeeEEec---CCCCceeeEEEcc-CCCEEEEEECCCcEEEEECCCCcE-------EEEee-CCC
Q 007411 332 AGMDTKVKIWDVVNSGKCMRTYM---GHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTETGQV-------IRTFS-TGK 399 (604)
Q Consensus 332 gs~Dg~I~IWd~~~~~~~~~~~~---~h~~~V~~l~fsp-dg~~L~s~s~Dg~I~vWD~~t~~~-------i~~~~-~~~ 399 (604)
++.-|.|-|+++...+++-.... .....|+++.|.| |..+|++++.||.|+||.+..+.. ...+. ...
T Consensus 599 ~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~e 678 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGE 678 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccc
Confidence 45579999999976665432211 2456799999999 888999999999999999976532 22222 234
Q ss_pred cceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 007411 400 IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIK 479 (604)
Q Consensus 400 ~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~ 479 (604)
.++.+.|+|... .+|++++.|.+|.+||+++++....+.+|.+.|..++|+|+|+.+++.+.||+|++|+-+......
T Consensus 679 KI~slRfHPLAa--dvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv 756 (1012)
T KOG1445|consen 679 KITSLRFHPLAA--DVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPV 756 (1012)
T ss_pred eEEEEEecchhh--hHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCcc
Confidence 566778887654 689999999999999999999999999999999999999999999999999999999988765433
Q ss_pred E-eecCCCCcccEEEEcCCCCEEEEEEcC----CeEEEEEcCCceeecccccccCcccccceEEEEEcCCCC-EEEEEcC
Q 007411 480 Y-ISEPHMHSMPSISLHPNTNWLAAQSLD----NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR-FVMSGDG 553 (604)
Q Consensus 480 ~-~~~~~~~~v~~l~~sp~g~~l~s~s~D----g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~-~L~sgs~ 553 (604)
+ -..+....--.|.|.-+|+++++.+.| .+|.+|+...-.. ..+....-. ....+.--.+.+|.. ++++|-.
T Consensus 757 ~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~-~pl~t~~lD-vaps~LvP~YD~Ds~~lfltGKG 834 (1012)
T KOG1445|consen 757 YEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDL-RPLYTQVLD-VAPSPLVPHYDYDSNVLFLTGKG 834 (1012)
T ss_pred ccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccC-Ccceeeeec-ccCccccccccCCCceEEEecCC
Confidence 2 222233344567888899999988876 4578887654210 000000000 000111122344544 5678889
Q ss_pred CCcEEEEeCCCCee
Q 007411 554 EGKCWFWDWKSCKV 567 (604)
Q Consensus 554 dG~I~iwd~~t~~~ 567 (604)
|..|++|.+-...+
T Consensus 835 D~~v~~yEv~~esP 848 (1012)
T KOG1445|consen 835 DRFVNMYEVIYESP 848 (1012)
T ss_pred CceEEEEEecCCCc
Confidence 99999999865443
No 208
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.56 E-value=4e-13 Score=149.13 Aligned_cols=254 Identities=18% Similarity=0.272 Sum_probs=177.5
Q ss_pred EecCCCCeeeEEecCCCCceeeEEEccC-CCEEEEEECCCcEEEEECCCC-------cEEEEee-CCCcceEEEEccCCC
Q 007411 341 WDVVNSGKCMRTYMGHSKAVRDISFCND-GTKFLTASYDKNIKYWDTETG-------QVIRTFS-TGKIPYVVKLNPDDD 411 (604)
Q Consensus 341 Wd~~~~~~~~~~~~~h~~~V~~l~fspd-g~~L~s~s~Dg~I~vWD~~t~-------~~i~~~~-~~~~~~~~~~~~~~~ 411 (604)
|+. .|..+..+..|...|..++.++. +.+|+|||.||+|++|++..- +...++. .+....++..++.+
T Consensus 1034 W~p--~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~- 1110 (1431)
T KOG1240|consen 1034 WNP--RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG- 1110 (1431)
T ss_pred CCc--cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC-
Confidence 776 78899999999999999999885 499999999999999998632 2334444 45666677777654
Q ss_pred CCcEEEEEEcCCeEEEEeCCCC--c-----eEEEEcCc-CCceeEE-EEeC-CC-CEEEEEeCCCcEEEEECCCCeEEEE
Q 007411 412 KQNILLAGMSDKKIVQWDMNTK--E-----ITQEYDQH-LGAVNTI-TFVD-SN-RRFVTSSDDKSLRVWEFGIPVVIKY 480 (604)
Q Consensus 412 ~~~~lvsg~~dg~I~iwD~~s~--~-----~~~~~~~h-~~~V~~i-~~sp-~~-~~l~sgs~Dg~I~iwdl~~~~~~~~ 480 (604)
+.+++++.||.|.+.++... . .......+ .+.+.++ ++.. .. ..++.+..-+.|..||++.......
T Consensus 1111 --~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~ 1188 (1431)
T KOG1240|consen 1111 --DQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR 1188 (1431)
T ss_pred --CeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh
Confidence 56999999999999998752 1 11111222 2333333 3322 22 3678888889999999988765544
Q ss_pred eec-CCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcC---CCCEEEEEc--CC
Q 007411 481 ISE-PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP---DGRFVMSGD--GE 554 (604)
Q Consensus 481 ~~~-~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp---dg~~L~sgs--~d 554 (604)
+.. ...+.|++++.+|.+.++++|+..|.+.+||++-+..+.... +.. ...+..+..+| ....+++++ ..
T Consensus 1189 lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~-~P~---~~~i~~v~~~~~~~~~S~~vs~~~~~~ 1264 (1431)
T KOG1240|consen 1189 LKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWE-HPA---RAPIRHVWLCPTYPQESVSVSAGSSSN 1264 (1431)
T ss_pred hhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeeccc-Ccc---cCCcceEEeeccCCCCceEEEecccCC
Confidence 432 355679999999999999999999999999998665543322 222 24455555554 334555444 57
Q ss_pred CcEEEEeCCCCeeEEEEecCCC-------------------cEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007411 555 GKCWFWDWKSCKVFRTLKCHEG-------------------VCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 555 G~I~iwd~~t~~~~~~l~~h~~-------------------~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
+.|.+|++.+|.+-..+....+ ....+.+.. .+.++++||.|+.|+.||
T Consensus 1265 nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~-~~~~~ltggsd~kIR~wD 1332 (1431)
T KOG1240|consen 1265 NEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCE-KNGFLLTGGSDMKIRKWD 1332 (1431)
T ss_pred CceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeeccc-CCceeeecCCccceeecc
Confidence 8899999999877666654311 112233333 566899999999999998
No 209
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.56 E-value=3.3e-13 Score=138.34 Aligned_cols=217 Identities=16% Similarity=0.257 Sum_probs=151.8
Q ss_pred eeEEEccCCCEEEEEECCCcEEEEECCCCcEE-----EEeeCCCcceEEEEc--cCCCCCcEEEEEEcCCeEEEEeCCCC
Q 007411 361 RDISFCNDGTKFLTASYDKNIKYWDTETGQVI-----RTFSTGKIPYVVKLN--PDDDKQNILLAGMSDKKIVQWDMNTK 433 (604)
Q Consensus 361 ~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i-----~~~~~~~~~~~~~~~--~~~~~~~~lvsg~~dg~I~iwD~~s~ 433 (604)
+...++-.|.+|+..- ...+.+|+.+.+..+ +.+-.+..+.|..|+ ....++.-+++|-.-|.|+++|....
T Consensus 127 ~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~ 205 (636)
T KOG2394|consen 127 TNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINF 205 (636)
T ss_pred eeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchhh
Confidence 3333444555554332 246777777643222 122234445555553 23344566899999999999998764
Q ss_pred ceEEEEc----CcCCceeEEEEeCCC-CEEEEEeCCCcEEEEECCCC--------------eE--------------EEE
Q 007411 434 EITQEYD----QHLGAVNTITFVDSN-RRFVTSSDDKSLRVWEFGIP--------------VV--------------IKY 480 (604)
Q Consensus 434 ~~~~~~~----~h~~~V~~i~~sp~~-~~l~sgs~Dg~I~iwdl~~~--------------~~--------------~~~ 480 (604)
+....+. -....|+|+.|.|.+ ..|+.+-.+|.+++||.... .. +..
T Consensus 206 ~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~ 285 (636)
T KOG2394|consen 206 EVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVAR 285 (636)
T ss_pred HHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccce
Confidence 3222221 134689999999864 46777778999999976311 00 000
Q ss_pred eecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEE
Q 007411 481 ISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFW 560 (604)
Q Consensus 481 ~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iw 560 (604)
+. .....|..++|+|||++||+.+.||.++||+..+...+...+.+- +...|++|||||+||++|+.|--|.||
T Consensus 286 w~-~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYF-----GGLLCvcWSPDGKyIvtGGEDDLVtVw 359 (636)
T KOG2394|consen 286 WH-IGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYF-----GGLLCVCWSPDGKYIVTGGEDDLVTVW 359 (636)
T ss_pred eE-eccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhc-----cceEEEEEcCCccEEEecCCcceEEEE
Confidence 10 123478889999999999999999999999998765554444333 446789999999999999999999999
Q ss_pred eCCCCeeEEEEecCCCcEEEEEEe
Q 007411 561 DWKSCKVFRTLKCHEGVCIGCEWH 584 (604)
Q Consensus 561 d~~t~~~~~~l~~h~~~V~~v~~s 584 (604)
.+..++.+..-++|...|..|+|.
T Consensus 360 Sf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 360 SFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred EeccceEEEeccccccceeeEeec
Confidence 999999999999999999999998
No 210
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=1.1e-12 Score=141.69 Aligned_cols=235 Identities=17% Similarity=0.197 Sum_probs=161.3
Q ss_pred CcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECC---CcEEEEECCCCcEEEEeeCCCcceEEEEccCCCC
Q 007411 336 TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD---KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDK 412 (604)
Q Consensus 336 g~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~D---g~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~ 412 (604)
..|.+||. .+...+.+..|...+.+.+|+|+|+.|+.++.+ ..|.+||+.+++...............|++++.
T Consensus 184 ~~l~i~D~--~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~- 260 (433)
T PRK04922 184 YALQVADS--DGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGR- 260 (433)
T ss_pred EEEEEECC--CCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCC-
Confidence 35888887 344555666778889999999999999988754 469999999887654433333334566777543
Q ss_pred CcEEEEEEcCC--eEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeC-CCc--EEEEECCCCeEEEEeecCCCC
Q 007411 413 QNILLAGMSDK--KIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD-DKS--LRVWEFGIPVVIKYISEPHMH 487 (604)
Q Consensus 413 ~~~lvsg~~dg--~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~-Dg~--I~iwdl~~~~~~~~~~~~~~~ 487 (604)
.++++.+.+| .|++||+.+++.. .+..+.......+|+|+++.|+.++. +|. |+++++..+....... ...
T Consensus 261 -~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~--~g~ 336 (433)
T PRK04922 261 -RLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTF--QGN 336 (433)
T ss_pred -EEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeec--CCC
Confidence 4556666555 6999999988754 34455555678899999998887764 444 6677776655433221 223
Q ss_pred cccEEEEcCCCCEEEEEEcCC---eEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcC---CCcEEEEe
Q 007411 488 SMPSISLHPNTNWLAAQSLDN---QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG---EGKCWFWD 561 (604)
Q Consensus 488 ~v~~l~~sp~g~~l~s~s~Dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~---dG~I~iwd 561 (604)
....++|+|+|++|+..+.++ .|.+|++.++... .+. .+ .......|+|||++|+..+. .+.|++++
T Consensus 337 ~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt--~~----~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~ 409 (433)
T PRK04922 337 YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT--PG----SLDESPSFAPNGSMVLYATREGGRGVLAAVS 409 (433)
T ss_pred CccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC--CC----CCCCCceECCCCCEEEEEEecCCceEEEEEE
Confidence 345789999999998876543 6899998765433 111 11 12234789999998877654 34688888
Q ss_pred CCCCeeEEEEecCCCcEEEEEEec
Q 007411 562 WKSCKVFRTLKCHEGVCIGCEWHP 585 (604)
Q Consensus 562 ~~t~~~~~~l~~h~~~V~~v~~sp 585 (604)
.. +.....+..+.+.+...+|+|
T Consensus 410 ~~-g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 410 TD-GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CC-CCceEEcccCCCCCCCCccCC
Confidence 74 455666666667778888887
No 211
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.55 E-value=9.4e-12 Score=120.61 Aligned_cols=270 Identities=13% Similarity=0.165 Sum_probs=180.4
Q ss_pred eEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCc--eeeEEEccCCCEEE-EEECC------CcEEEEEC
Q 007411 316 VSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKA--VRDISFCNDGTKFL-TASYD------KNIKYWDT 386 (604)
Q Consensus 316 V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~--V~~l~fspdg~~L~-s~s~D------g~I~vWD~ 386 (604)
...++|+.+ ...++.|..+| .+||++. .-+.......+.+. +.-+-| ..++|+ +|+.+ ..|.|||=
T Consensus 8 ~lsvs~NQD-~ScFava~~~G-friyn~~-P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 8 TLSVSFNQD-HSCFAVATDTG-FRIYNCD-PFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred eeEEEEccC-CceEEEEecCc-eEEEecC-chhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEec
Confidence 344889988 66666666554 8999983 32221111222222 222223 334554 44433 46999998
Q ss_pred CCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCC-CCceEEEEcCcC--CceeEEEEeCCCCEEEE-Ee
Q 007411 387 ETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN-TKEITQEYDQHL--GAVNTITFVDSNRRFVT-SS 462 (604)
Q Consensus 387 ~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~-s~~~~~~~~~h~--~~V~~i~~sp~~~~l~s-gs 462 (604)
...+++..+.....+..+.+..+ .+++. ..+.|++|... ..+.++.+.... ..+.+++-..+...|+. |-
T Consensus 83 ~k~~~i~el~f~~~I~~V~l~r~-----riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~ 156 (346)
T KOG2111|consen 83 LKERCIIELSFNSEIKAVKLRRD-----RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGF 156 (346)
T ss_pred ccCcEEEEEEeccceeeEEEcCC-----eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCC
Confidence 88899999988888888888763 24433 46899999987 445666554322 22333333333334443 34
Q ss_pred CCCcEEEEECCCCeE-EEEeecCCCCcccEEEEcCCCCEEEEEEcCCe-EEEEEcCCceeecccccccCcccccceEEEE
Q 007411 463 DDKSLRVWEFGIPVV-IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQ-ILIYSTRERFQLNKKKRFAGHIVAGYACQVN 540 (604)
Q Consensus 463 ~Dg~I~iwdl~~~~~-~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~-I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~ 540 (604)
.-|.|.|-|+..... ...+...|...|.|++++-+|..+|++|..|+ |+|||..++..+...++-.. ...+.+++
T Consensus 157 k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d---~A~iy~ia 233 (346)
T KOG2111|consen 157 KTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVD---RADIYCIA 233 (346)
T ss_pred ccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCc---hheEEEEE
Confidence 568999999976655 22334579999999999999999999999988 89999999988866554433 36788999
Q ss_pred EcCCCCEEEEEcCCCcEEEEeCCCCe---e---------------------EEEEecCCCcEEEEEEecCCCCEEEEEeC
Q 007411 541 FSPDGRFVMSGDGEGKCWFWDWKSCK---V---------------------FRTLKCHEGVCIGCEWHPLEQSKVATCGW 596 (604)
Q Consensus 541 ~spdg~~L~sgs~dG~I~iwd~~t~~---~---------------------~~~l~~h~~~V~~v~~sp~~~~~l~tgg~ 596 (604)
|||++.+|++++..|+|.||.++... . +..++...+...-++|-. +...++..+.
T Consensus 234 FSp~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~-~~nsvi~i~~ 312 (346)
T KOG2111|consen 234 FSPNSSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGS-ETNTVIAICA 312 (346)
T ss_pred eCCCccEEEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecC-CCCeEEEEEe
Confidence 99999999999999999999875421 1 122233345556677776 4456666777
Q ss_pred CCcE
Q 007411 597 DGLI 600 (604)
Q Consensus 597 DG~I 600 (604)
||.-
T Consensus 313 Dgsy 316 (346)
T KOG2111|consen 313 DGSY 316 (346)
T ss_pred CCcE
Confidence 8764
No 212
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=1.7e-12 Score=139.68 Aligned_cols=235 Identities=15% Similarity=0.163 Sum_probs=157.5
Q ss_pred CcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECC---CcEEEEECCCCcEEEEeeCCCcceEEEEccCCCC
Q 007411 336 TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD---KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDK 412 (604)
Q Consensus 336 g~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~D---g~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~ 412 (604)
..|.++|. .+...+.+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++...............|+|++.
T Consensus 176 ~~L~~~D~--dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~- 252 (427)
T PRK02889 176 YQLQISDA--DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGR- 252 (427)
T ss_pred cEEEEECC--CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCC-
Confidence 35666665 555556666788899999999999999887753 359999999987654433333445667777553
Q ss_pred CcEEEEEEcCCeEEE--EeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeC-CCcEEEEEC--CCCeEEEEeecCCCC
Q 007411 413 QNILLAGMSDKKIVQ--WDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD-DKSLRVWEF--GIPVVIKYISEPHMH 487 (604)
Q Consensus 413 ~~~lvsg~~dg~I~i--wD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~-Dg~I~iwdl--~~~~~~~~~~~~~~~ 487 (604)
.++++.+.++...+ +|+.++. ...+..+.+.+....|+|+|+.|+..+. +|...||.+ ..+... .+.. ...
T Consensus 253 -~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~-~g~ 328 (427)
T PRK02889 253 -TLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTF-TGS 328 (427)
T ss_pred -EEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEec-CCC
Confidence 45556677776554 4565554 4445555566677899999998887664 456666654 444322 2221 223
Q ss_pred cccEEEEcCCCCEEEEEEcCC---eEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCC---cEEEEe
Q 007411 488 SMPSISLHPNTNWLAAQSLDN---QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG---KCWFWD 561 (604)
Q Consensus 488 ~v~~l~~sp~g~~l~s~s~Dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG---~I~iwd 561 (604)
......|+|+|++|+..+.++ .|.+|++.++.... +. .+ .....+.|+|||++|+..+.++ .+.+.+
T Consensus 329 ~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt--~~----~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~ 401 (427)
T PRK02889 329 YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LT--DT----TRDESPSFAPNGRYILYATQQGGRSVLAAVS 401 (427)
T ss_pred CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-cc--CC----CCccCceECCCCCEEEEEEecCCCEEEEEEE
Confidence 344678999999999877654 69999987764321 11 11 1224579999999988776543 366666
Q ss_pred CCCCeeEEEEecCCCcEEEEEEec
Q 007411 562 WKSCKVFRTLKCHEGVCIGCEWHP 585 (604)
Q Consensus 562 ~~t~~~~~~l~~h~~~V~~v~~sp 585 (604)
+ ++.....+..+.+.+...+|+|
T Consensus 402 ~-~g~~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 402 S-DGRIKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred C-CCCceEEeecCCCCCCCCccCC
Confidence 6 5666777777778888889988
No 213
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.54 E-value=6.4e-13 Score=131.73 Aligned_cols=264 Identities=14% Similarity=0.164 Sum_probs=190.0
Q ss_pred CCCCeEEEEEcCCCC-CEEEEEECCCcEEEEecCCCCeeeE------EecCCCCceeeEEEccCCCEEEEEECCCcEEEE
Q 007411 312 HTKGVSAIRFFPKYG-HLILSAGMDTKVKIWDVVNSGKCMR------TYMGHSKAVRDISFCNDGTKFLTASYDKNIKYW 384 (604)
Q Consensus 312 H~~~V~~l~fsp~~g-~~L~sgs~Dg~I~IWd~~~~~~~~~------~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vW 384 (604)
-...|+.++|.-++. ..|..++.+..+..+.+. ...+.. +.....++|..+... ...|++|-.+|.+.+|
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~-E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIE-EFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVR 130 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCccccccccc-CCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEE
Confidence 345577788876533 344555577777777773 333332 334456677777765 3378888899999999
Q ss_pred ECCCCc----EEEEeeCCCcceEEEEccCCCCCcEEEEEEcC--CeEEEEeCCCCceEEEEcCc---------CCceeEE
Q 007411 385 DTETGQ----VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD--KKIVQWDMNTKEITQEYDQH---------LGAVNTI 449 (604)
Q Consensus 385 D~~t~~----~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~d--g~I~iwD~~s~~~~~~~~~h---------~~~V~~i 449 (604)
..+.+. .+..+..+.....+.-.+ ....++++|+.. ..+.+||+...+.+.+-+.- .-.++++
T Consensus 131 ~~k~~d~hss~l~~la~g~g~~~~r~~~--~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi 208 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKLATGPGLYDVRQTD--TDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDI 208 (412)
T ss_pred eccCCccccccceeeecCCceeeeccCC--CCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccc
Confidence 998543 333444444444444444 444788889998 89999999988655543321 2246788
Q ss_pred EEeCC--CCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccc
Q 007411 450 TFVDS--NRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRF 527 (604)
Q Consensus 450 ~~sp~--~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~ 527 (604)
.|.+. ...|++++.-+.|++||.+.++.......-...+++++...|++++|++|..-+.+..||++.+..... .+
T Consensus 209 ~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~--~~ 286 (412)
T KOG3881|consen 209 RFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGC--GL 286 (412)
T ss_pred eecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeecc--cc
Confidence 99987 889999999999999999876443333334678999999999999999999999999999998765533 23
Q ss_pred cCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEec
Q 007411 528 AGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHP 585 (604)
Q Consensus 528 ~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp 585 (604)
.+. .+.+.++..+|.+++|++++-|..|+|+|+++.+++..... ...++++.+.+
T Consensus 287 kg~--tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv-Ks~lt~il~~~ 341 (412)
T KOG3881|consen 287 KGI--TGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV-KSRLTFILLRD 341 (412)
T ss_pred CCc--cCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh-hccccEEEecC
Confidence 343 56788899999999999999999999999999777665442 23356666654
No 214
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.54 E-value=3.6e-12 Score=123.46 Aligned_cols=178 Identities=16% Similarity=0.314 Sum_probs=141.7
Q ss_pred CcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECC-CCcEEEEeeCCC-cceEEEEccCCCCC
Q 007411 336 TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE-TGQVIRTFSTGK-IPYVVKLNPDDDKQ 413 (604)
Q Consensus 336 g~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~-t~~~i~~~~~~~-~~~~~~~~~~~~~~ 413 (604)
..|.|||= ...+++.++. ...+|.+|.+.++ +|++.- .+.|.||... .-+.++.+.... +...+++.+.....
T Consensus 75 NkviIWDD-~k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~ 149 (346)
T KOG2111|consen 75 NKVIIWDD-LKERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKS 149 (346)
T ss_pred ceEEEEec-ccCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCce
Confidence 57999995 5666777664 6788999999765 566654 5789999987 556666666544 33355566655544
Q ss_pred cEEEEEEcCCeEEEEeCCCCce--EEEEcCcCCceeEEEEeCCCCEEEEEeCCCc-EEEEECCCCeEEEEeecCC-CCcc
Q 007411 414 NILLAGMSDKKIVQWDMNTKEI--TQEYDQHLGAVNTITFVDSNRRFVTSSDDKS-LRVWEFGIPVVIKYISEPH-MHSM 489 (604)
Q Consensus 414 ~~lvsg~~dg~I~iwD~~s~~~--~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~-I~iwdl~~~~~~~~~~~~~-~~~v 489 (604)
-+.+-|..-|.|.+-|+...+. ...+..|.+.|.|++++-+|..++|+|..|+ |||||..++..+..+..+. ...|
T Consensus 150 ~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~i 229 (346)
T KOG2111|consen 150 LLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADI 229 (346)
T ss_pred EEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheE
Confidence 4444466679999999987665 4778899999999999999999999999997 7999999999998887653 4469
Q ss_pred cEEEEcCCCCEEEEEEcCCeEEEEEcCCc
Q 007411 490 PSISLHPNTNWLAAQSLDNQILIYSTRER 518 (604)
Q Consensus 490 ~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~ 518 (604)
.+|+|+|+..+|+++|..|+|.||.++..
T Consensus 230 y~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 230 YCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 99999999999999999999999998763
No 215
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=5.2e-12 Score=136.49 Aligned_cols=234 Identities=17% Similarity=0.167 Sum_probs=160.1
Q ss_pred CcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEEC---CCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCC
Q 007411 336 TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASY---DKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDK 412 (604)
Q Consensus 336 g~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~---Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~ 412 (604)
..|.+||. .+...+.+..|...+.+.+|+|||+.|+..+. +..|.+||+.+++...............|+|++.
T Consensus 182 ~~l~~~d~--dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~- 258 (435)
T PRK05137 182 KRLAIMDQ--DGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGR- 258 (435)
T ss_pred eEEEEECC--CCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCC-
Confidence 36778887 45555667788889999999999999988764 4689999999887654333333444566777543
Q ss_pred CcEEEEEEcCC--eEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeC-CC--cEEEEECCCCeEEEEeecCCCC
Q 007411 413 QNILLAGMSDK--KIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD-DK--SLRVWEFGIPVVIKYISEPHMH 487 (604)
Q Consensus 413 ~~~lvsg~~dg--~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~-Dg--~I~iwdl~~~~~~~~~~~~~~~ 487 (604)
.++++.+.++ .|++||+.++... .+..+.+......|+|+++.|+.++. +| .|+++|+..+... .+.. ...
T Consensus 259 -~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~-~~~ 334 (435)
T PRK05137 259 -KVVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISF-GGG 334 (435)
T ss_pred -EEEEEEecCCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-Eeec-CCC
Confidence 5556666555 4888899887654 45556666788999999999887764 33 5888888765443 3322 234
Q ss_pred cccEEEEcCCCCEEEEEEcC---CeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCC------CcEE
Q 007411 488 SMPSISLHPNTNWLAAQSLD---NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE------GKCW 558 (604)
Q Consensus 488 ~v~~l~~sp~g~~l~s~s~D---g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~d------G~I~ 558 (604)
.+....|+|+|++|+..+.+ ..|.+|++.++... ... .+ ..+..+.|+|||++|+..+.+ ..|+
T Consensus 335 ~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~-~lt--~~----~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~ 407 (435)
T PRK05137 335 RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER-ILT--SG----FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLY 407 (435)
T ss_pred cccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE-ecc--CC----CCCCCCeECCCCCEEEEEEccCCCCCcceEE
Confidence 56678899999999887654 35888887554321 111 11 123458899999998765432 3688
Q ss_pred EEeCCCCeeEEEEecCCCcEEEEEEec
Q 007411 559 FWDWKSCKVFRTLKCHEGVCIGCEWHP 585 (604)
Q Consensus 559 iwd~~t~~~~~~l~~h~~~V~~v~~sp 585 (604)
++|+..+.. ..+. ..+.+...+|+|
T Consensus 408 ~~dl~g~~~-~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 408 TVDLTGRNE-REVP-TPGDASDPAWSP 432 (435)
T ss_pred EEECCCCce-EEcc-CCCCccCcccCC
Confidence 888866554 4444 344567788887
No 216
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=7.9e-12 Score=122.82 Aligned_cols=280 Identities=14% Similarity=0.155 Sum_probs=174.8
Q ss_pred CeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEec-CCCCceeeEEEccC-CCEEEEEECCCcEEEEECCCC---
Q 007411 315 GVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYM-GHSKAVRDISFCND-GTKFLTASYDKNIKYWDTETG--- 389 (604)
Q Consensus 315 ~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~-~h~~~V~~l~fspd-g~~L~s~s~Dg~I~vWD~~t~--- 389 (604)
.+..++|++. -..++++..|-.|+||+-. . .+...++ .....|+|++|-|. +..|+.|+. +-|.+|.....
T Consensus 100 dlr~~aWhqH-~~~fava~nddvVriy~ks-s-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~ 175 (445)
T KOG2139|consen 100 DLRGVAWHQH-IIAFAVATNDDVVRIYDKS-S-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNA 175 (445)
T ss_pred ceeeEeechh-hhhhhhhccCcEEEEeccC-C-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCccccc
Confidence 3667889886 6678889999999999973 3 4444443 34567999999994 456666665 66999976532
Q ss_pred -cE--------EEEee--CCCcceEEEEccCCCCCcEEEEE-EcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCE
Q 007411 390 -QV--------IRTFS--TGKIPYVVKLNPDDDKQNILLAG-MSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRR 457 (604)
Q Consensus 390 -~~--------i~~~~--~~~~~~~~~~~~~~~~~~~lvsg-~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~ 457 (604)
.. ...++ .+..+..+.+.+++ ..++++ -.+..|.+||..++..+.......+.++-+.|+|++.+
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dg---t~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~ 252 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDG---TILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDV 252 (445)
T ss_pred ccccccccccchhheeCCCCceeeEEEEcCCC---CEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCE
Confidence 11 11122 23334456666543 345544 55789999999999877666566788999999999999
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCcee--e----------cc--
Q 007411 458 FVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQ--L----------NK-- 523 (604)
Q Consensus 458 l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~--~----------~~-- 523 (604)
|++++-|+..++|............. ..+.|...+|+|+|++|+..+. +.-++|.+.-... . ..
T Consensus 253 lfaAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~llia 330 (445)
T KOG2139|consen 253 LFAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIA 330 (445)
T ss_pred EEEecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeec
Confidence 99999999999996544333222222 3448999999999998776553 3334444321110 0 00
Q ss_pred ----cccccC-cccccceEEEEEcCCCCEEEEEcCCC--------cEEEEeCCCCeeEEEEe-c--CCCcEEEEEEec--
Q 007411 524 ----KKRFAG-HIVAGYACQVNFSPDGRFVMSGDGEG--------KCWFWDWKSCKVFRTLK-C--HEGVCIGCEWHP-- 585 (604)
Q Consensus 524 ----~~~~~~-~~~~~~v~~l~~spdg~~L~sgs~dG--------~I~iwd~~t~~~~~~l~-~--h~~~V~~v~~sp-- 585 (604)
.....+ ....+.+.+++|.|.|.+|++.-..+ .|.+||.+..-.+.... + ......-+.|+|
T Consensus 331 DL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~ 410 (445)
T KOG2139|consen 331 DLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLK 410 (445)
T ss_pred cchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecc
Confidence 000111 11245677899999999999865433 46778776544433321 1 011123344444
Q ss_pred CCCCEEEEEeCCCcEEEe
Q 007411 586 LEQSKVATCGWDGLIKYW 603 (604)
Q Consensus 586 ~~~~~l~tgg~DG~I~vW 603 (604)
.++.+|..|=..|.|.-|
T Consensus 411 n~g~lLsiaWsTGriq~y 428 (445)
T KOG2139|consen 411 NEGRLLSIAWSTGRIQRY 428 (445)
T ss_pred cCCcEEEEEeccCceEee
Confidence 344455555556666544
No 217
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.51 E-value=1.4e-13 Score=140.82 Aligned_cols=221 Identities=15% Similarity=0.271 Sum_probs=151.7
Q ss_pred CCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcE-EEEeeCCCcceEEEEcc----CCCCCcEEEEEEcCCeEEEEe
Q 007411 355 GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQV-IRTFSTGKIPYVVKLNP----DDDKQNILLAGMSDKKIVQWD 429 (604)
Q Consensus 355 ~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~-i~~~~~~~~~~~~~~~~----~~~~~~~lvsg~~dg~I~iwD 429 (604)
.|..-|.|+.|+.+...+.+++.+..+.-||+.+... +..+.....+..+...+ .+.....|+.+++||.+.+.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~ 91 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN 91 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence 4666777999988776666555544444445443221 11111112222222111 122335789999999999987
Q ss_pred CCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCe
Q 007411 430 MNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQ 509 (604)
Q Consensus 430 ~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~ 509 (604)
+.++....+..|.++|.|-.|+|+|.-|++++.||.|++|.- ++.....+. ....+|.|++|.|+.+-++.+. .+.
T Consensus 92 -k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~-Q~~~~v~c~~W~p~S~~vl~c~-g~h 167 (737)
T KOG1524|consen 92 -KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVV-QNEESIRCARWAPNSNSIVFCQ-GGH 167 (737)
T ss_pred -ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHh-hcCceeEEEEECCCCCceEEec-CCe
Confidence 456667778899999999999999999999999999999983 343333332 3567899999999987665543 455
Q ss_pred EEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEec
Q 007411 510 ILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHP 585 (604)
Q Consensus 510 I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp 585 (604)
+.|=.+.....+ ...+.| .+.|.++.|++...+|++|+.|-+.++||. .|..+..-..|.-+|++++|.|
T Consensus 168 ~~IKpL~~n~k~---i~WkAH--DGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ITSva~np 237 (737)
T KOG1524|consen 168 ISIKPLAANSKI---IRWRAH--DGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAITSVAFNP 237 (737)
T ss_pred EEEeecccccce---eEEecc--CcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhccceeeeeecc
Confidence 666555433222 334555 688999999999999999999999999994 5555655666777777777777
No 218
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.51 E-value=4.1e-13 Score=130.08 Aligned_cols=273 Identities=15% Similarity=0.253 Sum_probs=183.1
Q ss_pred CCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEE-EEEECCCcEEEEECCCCcEE
Q 007411 314 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKF-LTASYDKNIKYWDTETGQVI 392 (604)
Q Consensus 314 ~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L-~s~s~Dg~I~vWD~~t~~~i 392 (604)
..|.-|.|.-+.-..|.....++.|.+|++ ...+-...+.....++.+++|||+|+.| .+...+-.|.||.+.+.+..
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl-~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~ 127 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSL-VQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY 127 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEe-ecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE
Confidence 567888899886677777888999999999 5666667777788899999999999655 46677999999999998887
Q ss_pred EEeeCCCcceEEEEccCCCCCcEEEEEEcC-C--eEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEE
Q 007411 393 RTFSTGKIPYVVKLNPDDDKQNILLAGMSD-K--KIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRV 469 (604)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~lvsg~~d-g--~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~i 469 (604)
..-...+....++|++++. +.+..+.- . .+.+.....-.++..+.-..-..+.|.|+|+|+.|++
T Consensus 128 ~~~~pK~~~kg~~f~~dg~---f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laV--------- 195 (447)
T KOG4497|consen 128 LLPHPKTNVKGYAFHPDGQ---FCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAV--------- 195 (447)
T ss_pred EecccccCceeEEECCCCc---eeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEE---------
Confidence 6665566667788888653 33333322 1 1222222223444555555667789999999877654
Q ss_pred EECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeccc-------------------------
Q 007411 470 WEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKK------------------------- 524 (604)
Q Consensus 470 wdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~------------------------- 524 (604)
||---.-.+... ...-.+..++|+|.+++|++|+.|+.+++.+--+-......
T Consensus 196 wd~~Leykv~aY--e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~ 273 (447)
T KOG4497|consen 196 WDNVLEYKVYAY--ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLL 273 (447)
T ss_pred ecchhhheeeee--eeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhc
Confidence 442211111111 12346788899999999999999999887542211000000
Q ss_pred --------ccccCc----------------------------ccccceEEEEEcCCCCEEEEEcC--CCcEEEEeCCCCe
Q 007411 525 --------KRFAGH----------------------------IVAGYACQVNFSPDGRFVMSGDG--EGKCWFWDWKSCK 566 (604)
Q Consensus 525 --------~~~~~~----------------------------~~~~~v~~l~~spdg~~L~sgs~--dG~I~iwd~~t~~ 566 (604)
..+..| .....+..++||+|..|+++-.. -..+.+||++..+
T Consensus 274 ~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~ 353 (447)
T KOG4497|consen 274 HHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK 353 (447)
T ss_pred ccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhh
Confidence 000000 00123456899999999998754 3679999999887
Q ss_pred eEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEe
Q 007411 567 VFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 603 (604)
Q Consensus 567 ~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vW 603 (604)
+...+. ...+|....|+| +...|+.|.....+.+|
T Consensus 354 l~avLi-Qk~piraf~WdP-~~prL~vctg~srLY~W 388 (447)
T KOG4497|consen 354 LHAVLI-QKHPIRAFEWDP-GRPRLVVCTGKSRLYFW 388 (447)
T ss_pred hhhhhh-hccceeEEEeCC-CCceEEEEcCCceEEEE
Confidence 766554 456799999999 55566666556678887
No 219
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.50 E-value=5e-11 Score=125.01 Aligned_cols=263 Identities=16% Similarity=0.198 Sum_probs=168.3
Q ss_pred cceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEE-CCCcE
Q 007411 303 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTAS-YDKNI 381 (604)
Q Consensus 303 ~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s-~Dg~I 381 (604)
.+++.++......-..+.|+|+ ++++++++.||.|.++|+ .+.+.+.++.... ...++++++||+++++++ ..+.+
T Consensus 26 ~~~~~~i~~~~~~h~~~~~s~D-gr~~yv~~rdg~vsviD~-~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v 102 (369)
T PF02239_consen 26 NKVVARIPTGGAPHAGLKFSPD-GRYLYVANRDGTVSVIDL-ATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTV 102 (369)
T ss_dssp -SEEEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEET-TSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEE
T ss_pred CeEEEEEcCCCCceeEEEecCC-CCEEEEEcCCCeEEEEEC-CcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCce
Confidence 4677788765554455779999 899999999999999999 6788888886544 468899999999998776 58999
Q ss_pred EEEECCCCcEEEEeeCCCc------ceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEE-EEcCcCCceeEEEEeCC
Q 007411 382 KYWDTETGQVIRTFSTGKI------PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQ-EYDQHLGAVNTITFVDS 454 (604)
Q Consensus 382 ~vWD~~t~~~i~~~~~~~~------~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~-~~~~h~~~V~~i~~sp~ 454 (604)
.++|.++.+.++.+..... .....+........++++--..+.|.+.|......+. .............|.|+
T Consensus 103 ~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpd 182 (369)
T PF02239_consen 103 SVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPD 182 (369)
T ss_dssp EEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TT
T ss_pred eEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcc
Confidence 9999999999998865432 2233333222332345555556999999987654332 23234456778999999
Q ss_pred CCEEEEE-eCCCcEEEEECCCCeEEEEeecC-------------------------------------------------
Q 007411 455 NRRFVTS-SDDKSLRVWEFGIPVVIKYISEP------------------------------------------------- 484 (604)
Q Consensus 455 ~~~l~sg-s~Dg~I~iwdl~~~~~~~~~~~~------------------------------------------------- 484 (604)
+++|+.+ ..+..|-++|..+......+..+
T Consensus 183 gry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv 262 (369)
T PF02239_consen 183 GRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVV 262 (369)
T ss_dssp SSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEE
T ss_pred cceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEE
Confidence 9987765 44567888887766544332100
Q ss_pred ----CCCcccEEEEcCCCCEEEEE----EcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcC--C
Q 007411 485 ----HMHSMPSISLHPNTNWLAAQ----SLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG--E 554 (604)
Q Consensus 485 ----~~~~v~~l~~sp~g~~l~s~----s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~--d 554 (604)
..+.-.-+..||+++++.+. ...+.|.++|..+......+....+ ..+..+.|+++|+++..+.. +
T Consensus 263 ~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~----~~~~h~ef~~dG~~v~vS~~~~~ 338 (369)
T PF02239_consen 263 KTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPG----KRVVHMEFNPDGKEVWVSVWDGN 338 (369)
T ss_dssp EEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT------EEEEEE-TTSSEEEEEEE--T
T ss_pred EEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCC----CcEeccEECCCCCEEEEEEecCC
Confidence 00111346678999999998 3348899999988755443332222 23667999999998776554 4
Q ss_pred CcEEEEeCCCCeeEEEEe
Q 007411 555 GKCWFWDWKSCKVFRTLK 572 (604)
Q Consensus 555 G~I~iwd~~t~~~~~~l~ 572 (604)
|.|.+||..+.+.+..+.
T Consensus 339 ~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 339 GAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp TEEEEEETTTTEEEEEEE
T ss_pred CEEEEEECCCcEEEEEEE
Confidence 469999999999999887
No 220
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.50 E-value=8.1e-14 Score=140.51 Aligned_cols=228 Identities=12% Similarity=0.187 Sum_probs=188.5
Q ss_pred eeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEE
Q 007411 360 VRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY 439 (604)
Q Consensus 360 V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~ 439 (604)
-..+.++.+|++|+.|+.-|.|..+|+.+++....+.....+..+.|..... +++......+++||- .|..++.+
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq----~~AVAQK~y~yvYD~-~GtElHCl 206 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQ----FFAVAQKKYVYVYDN-NGTELHCL 206 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchH----HHHhhhhceEEEecC-CCcEEeeh
Confidence 4678899999999999999999999999999999998888777777766542 566667789999995 46666666
Q ss_pred cCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCce
Q 007411 440 DQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF 519 (604)
Q Consensus 440 ~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~ 519 (604)
+.| ..|..+.|.|..-+|++++..|.++.-|+.+++.+..+.. ..+.+..++-+|-+..+-+|...|+|.+|+.....
T Consensus 207 k~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t-~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske 284 (545)
T KOG1272|consen 207 KRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRT-GAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE 284 (545)
T ss_pred hhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHc-cCCccchhhcCCccceEEEcCCCceEEecCCCCcc
Confidence 644 5789999999999999999999999999999998877754 56778889999999999999999999999988776
Q ss_pred eecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCc
Q 007411 520 QLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGL 599 (604)
Q Consensus 520 ~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~ 599 (604)
.+..+.. | .+.|.+|++.++|+|+++.+.|..++|||++....+.++.. .-+...+++|. .+ ++++|....
T Consensus 285 PLvKiLc---H--~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sq-kg--lLA~~~G~~ 355 (545)
T KOG1272|consen 285 PLVKILC---H--RGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQ-KG--LLALSYGDH 355 (545)
T ss_pred hHHHHHh---c--CCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccc-cc--ceeeecCCe
Confidence 6644433 3 56788899999999999999999999999999887777765 34567788876 33 566666778
Q ss_pred EEEe
Q 007411 600 IKYW 603 (604)
Q Consensus 600 I~vW 603 (604)
|.||
T Consensus 356 v~iw 359 (545)
T KOG1272|consen 356 VQIW 359 (545)
T ss_pred eeee
Confidence 8888
No 221
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=5.3e-12 Score=124.00 Aligned_cols=242 Identities=20% Similarity=0.318 Sum_probs=160.1
Q ss_pred CCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCee-------------eEEecCCCCceeeEEEccCCCEEEEEEC-C
Q 007411 313 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKC-------------MRTYMGHSKAVRDISFCNDGTKFLTASY-D 378 (604)
Q Consensus 313 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~-------------~~~~~~h~~~V~~l~fspdg~~L~s~s~-D 378 (604)
...|+|++|-|.++.-|+.|+.. -|.||........ +....+| .+|+++.|++||..+++++. |
T Consensus 140 QrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gs 217 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGS 217 (445)
T ss_pred hcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCc
Confidence 46799999999988888888875 4999987433221 1223345 68999999999999999987 5
Q ss_pred CcEEEEECCCCcEEEEee-CCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCE
Q 007411 379 KNIKYWDTETGQVIRTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRR 457 (604)
Q Consensus 379 g~I~vWD~~t~~~i~~~~-~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~ 457 (604)
..|.|||..++..+.... .......+.|+|++ .+|+++..|+..++|............--.+.|...+|+|.|++
T Consensus 218 ssi~iWdpdtg~~~pL~~~glgg~slLkwSPdg---d~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsf 294 (445)
T KOG2139|consen 218 SSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDG---DVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSF 294 (445)
T ss_pred ceEEEEcCCCCCcccccccCCCceeeEEEcCCC---CEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCE
Confidence 789999999998876663 34445578888876 57999999999999965443222222234559999999999998
Q ss_pred EEEEeCCCcEEEEECCCCe------------EEEEee-----------cCCCCcccEEEEcCCCCEEEEEEcCC------
Q 007411 458 FVTSSDDKSLRVWEFGIPV------------VIKYIS-----------EPHMHSMPSISLHPNTNWLAAQSLDN------ 508 (604)
Q Consensus 458 l~sgs~Dg~I~iwdl~~~~------------~~~~~~-----------~~~~~~v~~l~~sp~g~~l~s~s~Dg------ 508 (604)
|+.++. |.-++|.+.... .+..+. .-..+.+.+++|.|.|.+|++.-..+
T Consensus 295 LLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~ 373 (445)
T KOG2139|consen 295 LLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLC 373 (445)
T ss_pred EEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhh
Confidence 765553 344455542110 000000 11245788999999999999976543
Q ss_pred --eEEEEEcCCceeecccccccCcccccceEEEEEcC---CCCEEEEEcCCCcEEEEeC
Q 007411 509 --QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP---DGRFVMSGDGEGKCWFWDW 562 (604)
Q Consensus 509 --~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp---dg~~L~sgs~dG~I~iwd~ 562 (604)
.|.+||.+..-... ..+.+.+...+..-++|+| +|.+|..+=+.|.+.-|++
T Consensus 374 k~~i~~fdtr~sp~ve--ls~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 374 KLHISRFDTRKSPPVE--LSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred hhhhhhhcccccCceE--EEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeee
Confidence 35667765432221 1111222222333466666 5667777767777766654
No 222
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=1.7e-12 Score=139.82 Aligned_cols=219 Identities=15% Similarity=0.163 Sum_probs=143.9
Q ss_pred EEecCCCCCeEEEEEcCCCCCEEEEEECC---CcEEEEecCCCCe--eeEEecCCCCceeeEEEccCCCEEEEEE-CCCc
Q 007411 307 HTWSGHTKGVSAIRFFPKYGHLILSAGMD---TKVKIWDVVNSGK--CMRTYMGHSKAVRDISFCNDGTKFLTAS-YDKN 380 (604)
Q Consensus 307 ~tl~gH~~~V~~l~fsp~~g~~L~sgs~D---g~I~IWd~~~~~~--~~~~~~~h~~~V~~l~fspdg~~L~s~s-~Dg~ 380 (604)
+.+..|...|.+.+|+|+ |+.|+.++.+ ..|++||+ .++. .+..+.+| ..+++|+|||+.|+.++ .+|.
T Consensus 197 ~~lt~~~~~v~~p~wSPD-G~~la~~s~~~~~~~i~i~dl-~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~ 271 (429)
T PRK01742 197 FIVNRSSQPLMSPAWSPD-GSKLAYVSFENKKSQLVVHDL-RSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGV 271 (429)
T ss_pred eEeccCCCccccceEcCC-CCEEEEEEecCCCcEEEEEeC-CCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCc
Confidence 456788889999999999 7777776643 46999999 4443 33334443 44789999999888765 6787
Q ss_pred EEEE--ECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCC-ceEEEEcCcCCceeEEEEeCCCCE
Q 007411 381 IKYW--DTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITFVDSNRR 457 (604)
Q Consensus 381 I~vW--D~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~-~~~~~~~~h~~~V~~i~~sp~~~~ 457 (604)
+.|| |+.++................|.+++. .+++++..++...+|++... .....+ .+.+ .++.|+|+++.
T Consensus 272 ~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~--~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ 346 (429)
T PRK01742 272 LNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQ--SILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKT 346 (429)
T ss_pred EEEEEEECCCCCeEeeccCCCCcCCEEECCCCC--EEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCE
Confidence 6555 666666544333333345567777543 45555556787777776432 222223 3443 46789999999
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcC--CceeecccccccCcccccc
Q 007411 458 FVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR--ERFQLNKKKRFAGHIVAGY 535 (604)
Q Consensus 458 l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~--~~~~~~~~~~~~~~~~~~~ 535 (604)
|+.++.++ +.+||+.++...... .. .....+.|+|+|++|+.++.++.+.+|.+. ++... ..+..+ .+.
T Consensus 347 ia~~~~~~-i~~~Dl~~g~~~~lt-~~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~---~~l~~~--~g~ 417 (429)
T PRK01742 347 LVMINGDN-VVKQDLTSGSTEVLS-ST--FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFK---ARLPGS--DGQ 417 (429)
T ss_pred EEEEcCCC-EEEEECCCCCeEEec-CC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCce---EEccCC--CCC
Confidence 98888765 666999887654322 22 234567899999999999999988888753 23322 223333 244
Q ss_pred eEEEEEcCC
Q 007411 536 ACQVNFSPD 544 (604)
Q Consensus 536 v~~l~~spd 544 (604)
+..++|||-
T Consensus 418 ~~~p~wsp~ 426 (429)
T PRK01742 418 VKFPAWSPY 426 (429)
T ss_pred CCCcccCCC
Confidence 556888874
No 223
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=4.9e-12 Score=118.12 Aligned_cols=231 Identities=11% Similarity=0.146 Sum_probs=163.1
Q ss_pred ceeeEEEccCCCEEEEEECCCcEEEEECCCC---------c-EEEEeeC-CCcceEEEEccCCCCCcEEEEEEcCCeEEE
Q 007411 359 AVRDISFCNDGTKFLTASYDKNIKYWDTETG---------Q-VIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQ 427 (604)
Q Consensus 359 ~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~---------~-~i~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~i 427 (604)
.|..-+|+|.+++|+.|..+|.|.+..+.+- + .+..+.. ..+.+.+.+.. .+|++|+ ||.|+-
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d-----~~Lls~g-dG~V~g 85 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD-----DFLLSGG-DGLVYG 85 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh-----hheeecc-CceEEE
Confidence 4566789999999999999999999988642 1 2222222 23344455542 3455554 599999
Q ss_pred EeCCCCce------EEEE--cCc-----CCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEE
Q 007411 428 WDMNTKEI------TQEY--DQH-----LGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISL 494 (604)
Q Consensus 428 wD~~s~~~------~~~~--~~h-----~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~ 494 (604)
|..+.... +.+. ..| -..|+++.+.|..+.+++++.|+.++.||+++++..+.+. +|...+.++..
T Consensus 86 w~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~r-GHtDYvH~vv~ 164 (325)
T KOG0649|consen 86 WEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYR-GHTDYVHSVVG 164 (325)
T ss_pred eeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEc-CCcceeeeeee
Confidence 98764321 1111 112 2458999999988888888899999999999998877764 79999999998
Q ss_pred cCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcc-----cccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEE
Q 007411 495 HPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHI-----VAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFR 569 (604)
Q Consensus 495 sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~-----~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~ 569 (604)
-.....+++|+.||++++||+++.+.+..+..++... ...+|.+++. +..+|++|+. ..+.+|.+++.++..
T Consensus 165 R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgG-p~lslwhLrsse~t~ 241 (325)
T KOG0649|consen 165 RNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGG-PKLSLWHLRSSESTC 241 (325)
T ss_pred cccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCC-CceeEEeccCCCceE
Confidence 6666789999999999999999987765554433221 2445655655 4558888864 479999999988887
Q ss_pred EEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEe
Q 007411 570 TLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 603 (604)
Q Consensus 570 ~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vW 603 (604)
.+. -..++..+.|.. ..++++|....|.-|
T Consensus 242 vfp-ipa~v~~v~F~~---d~vl~~G~g~~v~~~ 271 (325)
T KOG0649|consen 242 VFP-IPARVHLVDFVD---DCVLIGGEGNHVQSY 271 (325)
T ss_pred EEe-cccceeEeeeec---ceEEEeccccceeee
Confidence 776 344577888854 467777766555544
No 224
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=3.8e-13 Score=136.48 Aligned_cols=255 Identities=16% Similarity=0.236 Sum_probs=190.5
Q ss_pred eeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcceE--EEEccCCCCCcEEEEEEcCCeEE
Q 007411 349 CMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMSDKKIV 426 (604)
Q Consensus 349 ~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~--~~~~~~~~~~~~lvsg~~dg~I~ 426 (604)
....+..|.+.|..|.|+..|..|++++.|..|.+||+..++....+..+|...+ ..|.|.... ..+++.+.||.|+
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d-~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGD-RTIVTSSRDGQVR 212 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCC-cCceeccccCcee
Confidence 3455789999999999999999999999999999999999999999988876654 346665443 5688889999999
Q ss_pred EEeCCC-Cc--eEEEEcCcCCceeEEEEeCCCC-EEEEEeCCCcEEEEECCCCeEEEEee--cCCCC---cccEEEEcCC
Q 007411 427 QWDMNT-KE--ITQEYDQHLGAVNTITFVDSNR-RFVTSSDDKSLRVWEFGIPVVIKYIS--EPHMH---SMPSISLHPN 497 (604)
Q Consensus 427 iwD~~s-~~--~~~~~~~h~~~V~~i~~sp~~~-~l~sgs~Dg~I~iwdl~~~~~~~~~~--~~~~~---~v~~l~~sp~ 497 (604)
+=.+.. +. ....+..|.++|.-++.-|... .|.+++.|+.+.-+|++...+...+. ..+.. ....++.+|.
T Consensus 213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~ 292 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR 292 (559)
T ss_pred eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence 877643 22 2345567999999999998754 58999999999999998765543332 12222 4678888886
Q ss_pred CC-EEEEEEcCCeEEEEEcCCceeec---ccccccCc----ccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC--C--
Q 007411 498 TN-WLAAQSLDNQILIYSTRERFQLN---KKKRFAGH----IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS--C-- 565 (604)
Q Consensus 498 g~-~l~s~s~Dg~I~iwd~~~~~~~~---~~~~~~~~----~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t--~-- 565 (604)
.. .+++++.|..+++||.+.-.... .+..+..+ .....|++++|+.++.-|+++..|-.|+++.-.- |
T Consensus 293 nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~ 372 (559)
T KOG1334|consen 293 NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSE 372 (559)
T ss_pred CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCC
Confidence 54 89999999999999986532110 01111111 2245689999998888888888888999995322 2
Q ss_pred --------eeEEE-EecCCC--cEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007411 566 --------KVFRT-LKCHEG--VCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 566 --------~~~~~-l~~h~~--~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
..+.. +++|.. .|.++-|..-...++++|+.-|.|.|||
T Consensus 373 p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~ 422 (559)
T KOG1334|consen 373 PDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWD 422 (559)
T ss_pred CCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEe
Confidence 22233 778864 5777876643678999999999999997
No 225
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.49 E-value=4.6e-14 Score=150.70 Aligned_cols=232 Identities=19% Similarity=0.327 Sum_probs=174.7
Q ss_pred ccccceeecCCCccccCCCCcccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCC
Q 007411 279 DYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSK 358 (604)
Q Consensus 279 d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~ 358 (604)
|..|| ++.+.++....+.|......++.+.+||++.|+.++.+.+ ..+++++|.|..|++|.+ ..+.++..+.+|++
T Consensus 199 Drtg~-~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~-n~~iaaaS~D~vIrvWrl-~~~~pvsvLrghtg 275 (1113)
T KOG0644|consen 199 DRTGR-YIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSN-NTMIAAASNDKVIRVWRL-PDGAPVSVLRGHTG 275 (1113)
T ss_pred ccccc-eEeecCccceeeeeeccchhhhccCCCCccccchhccchh-hhhhhhcccCceEEEEec-CCCchHHHHhcccc
Confidence 33444 4444555444455555566788899999999999999988 889999999999999999 78999999999999
Q ss_pred ceeeEEEccCCCEEEEEECCCcEEEEECCCC--------------cEEEEe---------eCC----------------C
Q 007411 359 AVRDISFCNDGTKFLTASYDKNIKYWDTETG--------------QVIRTF---------STG----------------K 399 (604)
Q Consensus 359 ~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~--------------~~i~~~---------~~~----------------~ 399 (604)
.|++|+|+|-. +.+.||++++||.+-. ..+..+ ..+ +
T Consensus 276 avtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~ 351 (1113)
T KOG0644|consen 276 AVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWR 351 (1113)
T ss_pred ceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhh
Confidence 99999999953 7788999999998711 111100 000 0
Q ss_pred cceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCE-EEEEeCCCcEEEEECCCCeEE
Q 007411 400 IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRR-FVTSSDDKSLRVWEFGIPVVI 478 (604)
Q Consensus 400 ~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~-l~sgs~Dg~I~iwdl~~~~~~ 478 (604)
....+.....++...+.+++-.+..+++|++.+|.+.+.+.+|...+..+.++|-+.+ ..+++.||+..|||+-.+.++
T Consensus 352 ~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pi 431 (1113)
T KOG0644|consen 352 SNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPI 431 (1113)
T ss_pred ccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcc
Confidence 0001111111122244555666778999999999999999999999999999997665 458899999999999988888
Q ss_pred EEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCc
Q 007411 479 KYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRER 518 (604)
Q Consensus 479 ~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~ 518 (604)
+....+ ...+....|+++|..++....-|.++|+....+
T Consensus 432 k~y~~g-h~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs 470 (1113)
T KOG0644|consen 432 KHYFIG-HGKLVDGKFSQDGTSIALSDDHGQLYILGTGQS 470 (1113)
T ss_pred eeeecc-cceeeccccCCCCceEecCCCCCceEEeccCCC
Confidence 877765 455667789999999999888899999876543
No 226
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.45 E-value=5.9e-13 Score=129.02 Aligned_cols=222 Identities=19% Similarity=0.209 Sum_probs=155.7
Q ss_pred eEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcC
Q 007411 362 DISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ 441 (604)
Q Consensus 362 ~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~ 441 (604)
-.+|||+|+++++++.- .+.|-|.++-+..+.+..-..+.-+.+..+ ...++.+...++.|.+|++...+-...++.
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ad--s~~ilC~~yk~~~vqvwsl~Qpew~ckIde 89 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKAD--SCHILCVAYKDPKVQVWSLVQPEWYCKIDE 89 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeecc--ceeeeeeeeccceEEEEEeecceeEEEecc
Confidence 46899999999999865 788889888877666655444444555543 336777788899999999999998889988
Q ss_pred cCCceeEEEEeCCCCEEE-EEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCcee
Q 007411 442 HLGAVNTITFVDSNRRFV-TSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQ 520 (604)
Q Consensus 442 h~~~V~~i~~sp~~~~l~-sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~ 520 (604)
...++.+++|+|+|+.|+ +..-+-.|.+|.+.+....... -....+..++|+|+|++.+.++.-.....+.+.....
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~--~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~ 167 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP--HPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKA 167 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec--ccccCceeEEECCCCceeeeeecccHHHHHHHHhhHH
Confidence 889999999999997655 5556889999999887655432 2345568999999999998887543222222221111
Q ss_pred ecccccccCcccccceEEEEEcCCCCEEEEEcC--CCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCC
Q 007411 521 LNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG--EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDG 598 (604)
Q Consensus 521 ~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~--dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG 598 (604)
....+.+.-. ..-.+.+.|+|||..|++-+. +-.|+.|. -.-.+..++|+| .+++|+.|+.|+
T Consensus 168 W~ll~~f~~d--T~DltgieWsPdg~~laVwd~~Leykv~aYe------------~~lG~k~v~wsP-~~qflavGsyD~ 232 (447)
T KOG4497|consen 168 WILLKEFKLD--TIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE------------RGLGLKFVEWSP-CNQFLAVGSYDQ 232 (447)
T ss_pred HHHHHhcCCC--cccccCceECCCCcEEEEecchhhheeeeee------------eccceeEEEecc-ccceEEeeccch
Confidence 1111222222 223456899999998876432 22222222 123578899999 788999999999
Q ss_pred cEEEe
Q 007411 599 LIKYW 603 (604)
Q Consensus 599 ~I~vW 603 (604)
.+||-
T Consensus 233 ~lrvl 237 (447)
T KOG4497|consen 233 MLRVL 237 (447)
T ss_pred hhhhh
Confidence 99874
No 227
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.45 E-value=8.2e-12 Score=123.99 Aligned_cols=209 Identities=13% Similarity=0.131 Sum_probs=164.0
Q ss_pred EecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCC---CeeeEEecCCCCceeeEEEccCC-CEEEEEECC--CcE
Q 007411 308 TWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNS---GKCMRTYMGHSKAVRDISFCNDG-TKFLTASYD--KNI 381 (604)
Q Consensus 308 tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~---~~~~~~~~~h~~~V~~l~fspdg-~~L~s~s~D--g~I 381 (604)
+..+.+++|..++.. ...|++|-.+|.+.+|..... ...+..+..+ ..+..|.-++.. ..+++|+.. ..+
T Consensus 100 ~~~l~~~~I~gl~~~---dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~l 175 (412)
T KOG3881|consen 100 TVSLGTKSIKGLKLA---DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINEL 175 (412)
T ss_pred ccccccccccchhhc---CCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccce
Confidence 445667778888765 347889999999999998311 2233334333 456777777744 455668888 789
Q ss_pred EEEECCCCcEEEEeeCCCc----------ceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCC-ceEEEEcCcCCceeEEE
Q 007411 382 KYWDTETGQVIRTFSTGKI----------PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTIT 450 (604)
Q Consensus 382 ~vWD~~t~~~i~~~~~~~~----------~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~-~~~~~~~~h~~~V~~i~ 450 (604)
.|||++..+.+.+-+.-.. ...+.|.+... ...|++++.-+.|++||++.+ +++..+.--..+|+++.
T Consensus 176 kiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~-~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~ 254 (412)
T KOG3881|consen 176 KIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSP-NYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTG 254 (412)
T ss_pred eeeecccceeeeeccCCCCccccceeeeeeccceecCCCC-CceEEEEecceeEEEecCcccCcceeEeccccCcceeee
Confidence 9999999877766543221 12344444322 478999999999999999875 67888888889999999
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceee
Q 007411 451 FVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQL 521 (604)
Q Consensus 451 ~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~ 521 (604)
..|.++.+++|..-|.+..||++.+........+..++|.+|..+|.+.+|++++.|..++|+|+.+...+
T Consensus 255 l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 255 LTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred ecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence 99999999999999999999999999998877788999999999999999999999999999999885544
No 228
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.45 E-value=1.4e-11 Score=120.34 Aligned_cols=273 Identities=21% Similarity=0.368 Sum_probs=180.7
Q ss_pred CCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCe----eeEEecCCC------------CceeeEEEccCC--CEEEE
Q 007411 313 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGK----CMRTYMGHS------------KAVRDISFCNDG--TKFLT 374 (604)
Q Consensus 313 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~----~~~~~~~h~------------~~V~~l~fspdg--~~L~s 374 (604)
..-|.+|.|... |.+|++|..+|.|.++.-....+ ....++.|. ..|..+.|.+++ ..|+.
T Consensus 25 adiis~vef~~~-Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 25 ADIISAVEFDHY-GERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hcceeeEEeecc-cceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 456899999998 99999999999999997644333 344555553 358889999854 57888
Q ss_pred EECCCcEEEEECCCCcEEE-EeeCC--C---cceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEE-cCcCCcee
Q 007411 375 ASYDKNIKYWDTETGQVIR-TFSTG--K---IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY-DQHLGAVN 447 (604)
Q Consensus 375 ~s~Dg~I~vWD~~t~~~i~-~~~~~--~---~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~-~~h~~~V~ 447 (604)
.+.|.+|++|.+....... .+... . .+..+. +.+.+..+-.+.. .+.+.+ ..|.--|+
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr---------~p~~~~~~~~vea------~prRv~aNaHtyhiN 168 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLR---------LPVEGRHDLEVEA------SPRRVYANAHTYHIN 168 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceee---------ceeeccccceeee------eeeeeccccceeEee
Confidence 8899999999886433221 00000 0 000000 0111111111100 122222 46888899
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeec--CC-----CCcccEEEEcCC-CCEEEEEEcCCeEEEEEcCCce
Q 007411 448 TITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISE--PH-----MHSMPSISLHPN-TNWLAAQSLDNQILIYSTRERF 519 (604)
Q Consensus 448 ~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~--~~-----~~~v~~l~~sp~-g~~l~s~s~Dg~I~iwd~~~~~ 519 (604)
+|.++.+...++++. |=.|.+|++........+.. |+ ..-|++..|||. .+.|+-.+..|+|++.|++...
T Consensus 169 SIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~a 247 (433)
T KOG1354|consen 169 SISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSA 247 (433)
T ss_pred eeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhh
Confidence 999999998888775 67899999976543333322 11 234888899996 5788888899999999998532
Q ss_pred eecc-cccccCcc----------cccceEEEEEcCCCCEEEEEcCCCcEEEEeC-CCCeeEEEEecCCC-----------
Q 007411 520 QLNK-KKRFAGHI----------VAGYACQVNFSPDGRFVMSGDGEGKCWFWDW-KSCKVFRTLKCHEG----------- 576 (604)
Q Consensus 520 ~~~~-~~~~~~~~----------~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~-~t~~~~~~l~~h~~----------- 576 (604)
.... .+.+.... .-..|..+.|+++|+||++-+.- +|++||+ ...+++.+++.|..
T Consensus 248 LCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyl-tvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEn 326 (433)
T KOG1354|consen 248 LCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYL-TVKLWDLNMEAKPVETYPVHEYLRSKLCSLYEN 326 (433)
T ss_pred hhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccc-eeEEEeccccCCcceEEeehHhHHHHHHHHhhc
Confidence 2111 11111100 12347789999999999988654 8999999 56778888887742
Q ss_pred -c---EEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007411 577 -V---CIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 577 -~---V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
. -..|+|+. +..++.||+....+++++
T Consensus 327 D~IfdKFec~~sg-~~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 327 DAIFDKFECSWSG-NDSYVMTGSYNNVFRVFN 357 (433)
T ss_pred cchhheeEEEEcC-CcceEecccccceEEEec
Confidence 2 24688988 677999999999999875
No 229
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.43 E-value=6.8e-12 Score=121.58 Aligned_cols=204 Identities=14% Similarity=0.218 Sum_probs=152.6
Q ss_pred CCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCce
Q 007411 356 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI 435 (604)
Q Consensus 356 h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~ 435 (604)
-..+|+|.+|++|...++.+.....|.||.....+. -+.
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~-----------------------------------------w~~ 47 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL-----------------------------------------WEP 47 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCC-----------------------------------------cee
Confidence 346777888877777777776666666665432210 235
Q ss_pred EEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCe---EEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEE
Q 007411 436 TQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPV---VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILI 512 (604)
Q Consensus 436 ~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~---~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~i 512 (604)
.+++..|...|++|+|.|..+.|++|+.|..-++|....+. +...+. .+....+++.|+|.++.|++|+....|.|
T Consensus 48 ~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLl-RiNrAAt~V~WsP~enkFAVgSgar~isV 126 (361)
T KOG1523|consen 48 AHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLL-RINRAATCVKWSPKENKFAVGSGARLISV 126 (361)
T ss_pred ceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEE-EeccceeeEeecCcCceEEeccCccEEEE
Confidence 56778899999999999999999999999999999984332 222232 36778999999999999999999999999
Q ss_pred EEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCC------------------CCeeEEEEecC
Q 007411 513 YSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK------------------SCKVFRTLKCH 574 (604)
Q Consensus 513 wd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~------------------t~~~~~~l~~h 574 (604)
|-.......-..+.++- ...+.|.+++|+|++-+|++|+.|+..++|..- -|.++..+...
T Consensus 127 cy~E~ENdWWVsKhikk-PirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ 205 (361)
T KOG1523|consen 127 CYYEQENDWWVSKHIKK-PIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSS 205 (361)
T ss_pred EEEecccceehhhhhCC-ccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccC
Confidence 98765443322222222 225678899999999999999999999999631 13344455455
Q ss_pred CCcEEEEEEecCCCCEEEEEeCCCcEEEe
Q 007411 575 EGVCIGCEWHPLEQSKVATCGWDGLIKYW 603 (604)
Q Consensus 575 ~~~V~~v~~sp~~~~~l~tgg~DG~I~vW 603 (604)
.+-|..+.|+| .+..|+-.+.|++|.+=
T Consensus 206 ggwvh~v~fs~-sG~~lawv~Hds~v~~~ 233 (361)
T KOG1523|consen 206 GGWVHGVLFSP-SGNRLAWVGHDSTVSFV 233 (361)
T ss_pred CCceeeeEeCC-CCCEeeEecCCCceEEe
Confidence 67899999999 78899999999988764
No 230
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.41 E-value=1e-10 Score=125.81 Aligned_cols=233 Identities=16% Similarity=0.193 Sum_probs=153.9
Q ss_pred CcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECC---CcEEEEECCCCcEEEEeeCCCcceEEEEccCCCC
Q 007411 336 TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD---KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDK 412 (604)
Q Consensus 336 g~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~D---g~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~ 412 (604)
..|.++|. .+...+.+..+...+.+.+|+|+|++|+.++.+ ..|.+||+.+++...............|++++.
T Consensus 170 ~~l~~~d~--~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~- 246 (417)
T TIGR02800 170 YELQVADY--DGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGS- 246 (417)
T ss_pred ceEEEEcC--CCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCC-
Confidence 45677776 344445566677789999999999999987754 479999999887655444444445567776542
Q ss_pred CcEEEEEEcCC--eEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCC-C--cEEEEECCCCeEEEEeecCCCC
Q 007411 413 QNILLAGMSDK--KIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDD-K--SLRVWEFGIPVVIKYISEPHMH 487 (604)
Q Consensus 413 ~~~lvsg~~dg--~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~D-g--~I~iwdl~~~~~~~~~~~~~~~ 487 (604)
.++++.+.++ .|++||+.++... .+..+........|+|+++.|+.++.. + .|+++|+..+.... +. .+..
T Consensus 247 -~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~-~~~~ 322 (417)
T TIGR02800 247 -KLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-LT-FRGG 322 (417)
T ss_pred -EEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-ee-cCCC
Confidence 4555555444 5999999887644 333455556678999999988776643 3 57888887665432 32 2345
Q ss_pred cccEEEEcCCCCEEEEEEcCC---eEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCC---cEEEEe
Q 007411 488 SMPSISLHPNTNWLAAQSLDN---QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG---KCWFWD 561 (604)
Q Consensus 488 ~v~~l~~sp~g~~l~s~s~Dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG---~I~iwd 561 (604)
....+.|+|++++|+.++.++ .|.+|++.++.... +... .......|+|+|++|+..+.++ .+++.+
T Consensus 323 ~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~----l~~~---~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~ 395 (417)
T TIGR02800 323 YNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV----LTDT---GLDESPSFAPNGRMILYATTRGGRGVLGLVS 395 (417)
T ss_pred CccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE----ccCC---CCCCCceECCCCCEEEEEEeCCCcEEEEEEE
Confidence 567889999999999988876 78889987643221 1111 1122468999999988776654 355555
Q ss_pred CCCCeeEEEEecCCCcEEEEEE
Q 007411 562 WKSCKVFRTLKCHEGVCIGCEW 583 (604)
Q Consensus 562 ~~t~~~~~~l~~h~~~V~~v~~ 583 (604)
. +++....+..+.+.+..+.|
T Consensus 396 ~-~g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 396 T-DGRFRARLPLGNGDVREPAW 416 (417)
T ss_pred C-CCceeeECCCCCCCcCCCCC
Confidence 3 45555555544555555555
No 231
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.41 E-value=1.8e-09 Score=113.05 Aligned_cols=273 Identities=10% Similarity=0.220 Sum_probs=173.3
Q ss_pred EEEEECC----CcEEEEecCCCCeeeEEe--cCCCCceeeEEEccCCCEEEEEEC----CCcEEEEECCCC--c--EEEE
Q 007411 329 ILSAGMD----TKVKIWDVVNSGKCMRTY--MGHSKAVRDISFCNDGTKFLTASY----DKNIKYWDTETG--Q--VIRT 394 (604)
Q Consensus 329 L~sgs~D----g~I~IWd~~~~~~~~~~~--~~h~~~V~~l~fspdg~~L~s~s~----Dg~I~vWD~~t~--~--~i~~ 394 (604)
++.|+.. +.|.+|++......+... ..-......|+++|++++|.++.. ++.|..|.+... + .+..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 4455554 678888873222222211 123455678999999999999877 478999988764 2 3344
Q ss_pred ee-CCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCC-CceEEE---Ec----------CcCCceeEEEEeCCCCEEE
Q 007411 395 FS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT-KEITQE---YD----------QHLGAVNTITFVDSNRRFV 459 (604)
Q Consensus 395 ~~-~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s-~~~~~~---~~----------~h~~~V~~i~~sp~~~~l~ 459 (604)
.. .+..+..+.+.+++. .++++...+|.|.++++.. +.+... +. .......++.++|++++++
T Consensus 82 ~~~~g~~p~~i~~~~~g~--~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~ 159 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGR--FLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVY 159 (345)
T ss_dssp EEESSSCEEEEEECTTSS--EEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEE
T ss_pred eccCCCCcEEEEEecCCC--EEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEE
Confidence 44 556666777776542 4555555799999999987 433322 21 1234578999999999887
Q ss_pred EEeC-CCcEEEEECCCCe--E--EEEeecCCCCcccEEEEcCCCCEEEEEE-cCCeEEEEEcC--Cce--eecccccccC
Q 007411 460 TSSD-DKSLRVWEFGIPV--V--IKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTR--ERF--QLNKKKRFAG 529 (604)
Q Consensus 460 sgs~-Dg~I~iwdl~~~~--~--~~~~~~~~~~~v~~l~~sp~g~~l~s~s-~Dg~I~iwd~~--~~~--~~~~~~~~~~ 529 (604)
+... ...|.+|++.... . ...+..+.......++|+|+++++.+.. .++.|.+|++. .+. .+.....+..
T Consensus 160 v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~ 239 (345)
T PF10282_consen 160 VPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPE 239 (345)
T ss_dssp EEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCET
T ss_pred EEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccc
Confidence 7643 4479999997654 2 2344445667788999999999887665 56889999987 321 1111222211
Q ss_pred -cccccceEEEEEcCCCCEEEEEc-CCCcEEEEeCC--CCe--eEEEEecCCCcEEEEEEecCCCCEEEEEe-CCCcEEE
Q 007411 530 -HIVAGYACQVNFSPDGRFVMSGD-GEGKCWFWDWK--SCK--VFRTLKCHEGVCIGCEWHPLEQSKVATCG-WDGLIKY 602 (604)
Q Consensus 530 -~~~~~~v~~l~~spdg~~L~sgs-~dG~I~iwd~~--t~~--~~~~l~~h~~~V~~v~~sp~~~~~l~tgg-~DG~I~v 602 (604)
.........|.++|||++|+++. ..+.|.+|++. +++ .+..+.........++++| ++++|+++. .++.|.+
T Consensus 240 ~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~-~g~~l~Va~~~s~~v~v 318 (345)
T PF10282_consen 240 GFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSP-DGRYLYVANQDSNTVSV 318 (345)
T ss_dssp TSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-T-TSSEEEEEETTTTEEEE
T ss_pred cccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeC-CCCEEEEEecCCCeEEE
Confidence 11112567899999999988765 56789999983 333 3445554455579999999 556666554 6778887
Q ss_pred eC
Q 007411 603 WD 604 (604)
Q Consensus 603 WD 604 (604)
|+
T Consensus 319 f~ 320 (345)
T PF10282_consen 319 FD 320 (345)
T ss_dssp EE
T ss_pred EE
Confidence 73
No 232
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=1.1e-10 Score=121.00 Aligned_cols=269 Identities=16% Similarity=0.271 Sum_probs=175.6
Q ss_pred CCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEE-----ECC-----CcEE
Q 007411 313 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTA-----SYD-----KNIK 382 (604)
Q Consensus 313 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~-----s~D-----g~I~ 382 (604)
..+++..+++++ |.+++.+ .+..++|++..... .+.+...- .++++.|+|-|.+|.+- ..+ -.++
T Consensus 34 ~~~~~v~~~S~~-G~lfA~~-~~~~v~i~~~~~~~-~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~ 108 (566)
T KOG2315|consen 34 SRPCNVFAYSNN-GRLFAYS-DNQVVKVFEIATLK-VVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVL 108 (566)
T ss_pred CCcceeEEEcCC-CcEEEEE-cCCeEEEEEccCCc-EEEEeccc--eeeeeeecccccccccccccccccCCCCCCCcee
Confidence 444677778887 7766655 46789999984333 33333222 78999999999988753 112 3577
Q ss_pred EEECCCCcEEEEeeCCCc-ceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCC-C-EEE
Q 007411 383 YWDTETGQVIRTFSTGKI-PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSN-R-RFV 459 (604)
Q Consensus 383 vWD~~t~~~i~~~~~~~~-~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~-~-~l~ 459 (604)
+|+++++.....+..... .++..|+.+.. +++--..+.+++|++.+.+.+.. .-|...|+.+.++|.+ . .++
T Consensus 109 v~~vet~~~~s~~q~k~Q~~W~~qfs~dEs----l~arlv~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~~vA 183 (566)
T KOG2315|consen 109 VYNVETGVQRSQIQKKMQNGWVPQFSIDES----LAARLVSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPPFVA 183 (566)
T ss_pred eeeeccceehhheehhhhcCcccccccchh----hhhhhhcceEEEEecCCccceee-eeeccceeeEEecCCCCCceEE
Confidence 999999666555544322 25677776543 55555567888888876432221 1245556666666542 1 121
Q ss_pred E-----EeCCCcEEEEEC---------------------------------------------------------CCCeE
Q 007411 460 T-----SSDDKSLRVWEF---------------------------------------------------------GIPVV 477 (604)
Q Consensus 460 s-----gs~Dg~I~iwdl---------------------------------------------------------~~~~~ 477 (604)
+ .+.-+.|+||.+ .....
T Consensus 184 vyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~ 263 (566)
T KOG2315|consen 184 VYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESV 263 (566)
T ss_pred EEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceE
Confidence 1 122334444443 21111
Q ss_pred EEEeecCCCCcccEEEEcCCCCEEEEE--EcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcC--
Q 007411 478 IKYISEPHMHSMPSISLHPNTNWLAAQ--SLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG-- 553 (604)
Q Consensus 478 ~~~~~~~~~~~v~~l~~sp~g~~l~s~--s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~-- 553 (604)
. ......++|.+++|+|+++.|+++ -+-..+.|||++..-.. .+ ..++-.++-|+|.|++|+.++-
T Consensus 264 ~--V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~----df----~egpRN~~~fnp~g~ii~lAGFGN 333 (566)
T KOG2315|consen 264 S--VPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVF----DF----PEGPRNTAFFNPHGNIILLAGFGN 333 (566)
T ss_pred E--EecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeE----eC----CCCCccceEECCCCCEEEEeecCC
Confidence 1 112356889999999999877664 46678999998764222 11 1344556999999999987663
Q ss_pred -CCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeC------CCcEEEeC
Q 007411 554 -EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW------DGLIKYWD 604 (604)
Q Consensus 554 -dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~------DG~I~vWD 604 (604)
.|.|-|||+.+.+++..+.+... +-+.|+| ++.+++|+.. |+.++||+
T Consensus 334 L~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~P-dGe~flTATTaPRlrvdNg~Kiwh 388 (566)
T KOG2315|consen 334 LPGDMEVWDVPNRKLIAKFKAANT--TVFEWSP-DGEYFLTATTAPRLRVDNGIKIWH 388 (566)
T ss_pred CCCceEEEeccchhhccccccCCc--eEEEEcC-CCcEEEEEeccccEEecCCeEEEE
Confidence 58999999999999999987654 5689999 7778888775 67888985
No 233
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=2.1e-10 Score=123.95 Aligned_cols=234 Identities=12% Similarity=0.121 Sum_probs=154.4
Q ss_pred cEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECC---CcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCC
Q 007411 337 KVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD---KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQ 413 (604)
Q Consensus 337 ~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~D---g~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~ 413 (604)
.|.++|. .+...+.+..+...+....|+|||+.|+..+.+ ..|.+||+.+++...............|+|++.
T Consensus 180 ~l~~~d~--~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~-- 255 (430)
T PRK00178 180 TLQRSDY--DGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGS-- 255 (430)
T ss_pred EEEEECC--CCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCC--
Confidence 3666676 344455566677889999999999999877654 369999999887654433333334566777543
Q ss_pred cEEEEEEcCC--eEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeC-CC--cEEEEECCCCeEEEEeecCCCCc
Q 007411 414 NILLAGMSDK--KIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD-DK--SLRVWEFGIPVVIKYISEPHMHS 488 (604)
Q Consensus 414 ~~lvsg~~dg--~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~-Dg--~I~iwdl~~~~~~~~~~~~~~~~ 488 (604)
.++++...+| .|++||+.+++... +..+........|+|+++.|+..+. ++ .|+++++..+....... ....
T Consensus 256 ~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~--~~~~ 332 (430)
T PRK00178 256 KLAFVLSKDGNPEIYVMDLASRQLSR-VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF--VGNY 332 (430)
T ss_pred EEEEEEccCCCceEEEEECCCCCeEE-cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec--CCCC
Confidence 4555555555 68999999886543 4455566777899999998876664 33 57778887766433322 1223
Q ss_pred ccEEEEcCCCCEEEEEEcCC---eEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCC---CcEEEEeC
Q 007411 489 MPSISLHPNTNWLAAQSLDN---QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE---GKCWFWDW 562 (604)
Q Consensus 489 v~~l~~sp~g~~l~s~s~Dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~d---G~I~iwd~ 562 (604)
.....|+|+|++|+..+.++ .|.++|+.++.... +.. .. ......|+|||++|+..+.+ ..|+++++
T Consensus 333 ~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~--~~----~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~ 405 (430)
T PRK00178 333 NARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTD--TS----LDESPSVAPNGTMLIYATRQQGRGVLMLVSI 405 (430)
T ss_pred ccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccC--CC----CCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 34578999999998877543 57888887654321 111 11 11236899999999876543 35777787
Q ss_pred CCCeeEEEEecCCCcEEEEEEec
Q 007411 563 KSCKVFRTLKCHEGVCIGCEWHP 585 (604)
Q Consensus 563 ~t~~~~~~l~~h~~~V~~v~~sp 585 (604)
. +.....+..+.+.+...+|+|
T Consensus 406 ~-g~~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 406 N-GRVRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred C-CCceEECcCCCCCcCCCccCC
Confidence 4 444455655666778888887
No 234
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=2.4e-10 Score=123.64 Aligned_cols=234 Identities=15% Similarity=0.151 Sum_probs=152.4
Q ss_pred cEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECC-C--cEEEEECCCCcEEEEeeCCCcceEEEEccCCCCC
Q 007411 337 KVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD-K--NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQ 413 (604)
Q Consensus 337 ~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~D-g--~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~ 413 (604)
.|.++|. .+...+.+..+...+.+..|+|||+.|+..+.+ + .|.+||+.+++...............|+|++.
T Consensus 199 ~l~i~d~--dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~-- 274 (448)
T PRK04792 199 QLMIADY--DGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGK-- 274 (448)
T ss_pred EEEEEeC--CCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCC--
Confidence 5666676 333335566677889999999999999876543 2 58899998887644333333334566777543
Q ss_pred cEEEEEEcCCe--EEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeC-CC--cEEEEECCCCeEEEEeecCCCCc
Q 007411 414 NILLAGMSDKK--IVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD-DK--SLRVWEFGIPVVIKYISEPHMHS 488 (604)
Q Consensus 414 ~~lvsg~~dg~--I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~-Dg--~I~iwdl~~~~~~~~~~~~~~~~ 488 (604)
.++++...++. |+++|+.+++... +..+........|+|+++.|+..+. ++ .|+++|+.++....... ....
T Consensus 275 ~La~~~~~~g~~~Iy~~dl~tg~~~~-lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~--~g~~ 351 (448)
T PRK04792 275 KLALVLSKDGQPEIYVVDIATKALTR-ITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTF--EGEQ 351 (448)
T ss_pred EEEEEEeCCCCeEEEEEECCCCCeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEec--CCCC
Confidence 56666666664 8888998876543 4445556778899999998877654 33 46667777665433222 2222
Q ss_pred ccEEEEcCCCCEEEEEEcC-C--eEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcC-CC--cEEEEeC
Q 007411 489 MPSISLHPNTNWLAAQSLD-N--QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG-EG--KCWFWDW 562 (604)
Q Consensus 489 v~~l~~sp~g~~l~s~s~D-g--~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~-dG--~I~iwd~ 562 (604)
....+|+|+|++|+..+.+ + .|.++|+.++.... +. ... ......|+|+|++|+..+. +| .|++++.
T Consensus 352 ~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt--~~~----~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~ 424 (448)
T PRK04792 352 NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LT--STR----LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI 424 (448)
T ss_pred CcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-cc--CCC----CCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 3457899999998887654 3 45567776654221 11 111 1113579999998876554 33 3777786
Q ss_pred CCCeeEEEEecCCCcEEEEEEec
Q 007411 563 KSCKVFRTLKCHEGVCIGCEWHP 585 (604)
Q Consensus 563 ~t~~~~~~l~~h~~~V~~v~~sp 585 (604)
+|.....+..+.+.+...+|+|
T Consensus 425 -~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 425 -DGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred -CCCceEECcCCCCCcCCCccCC
Confidence 5666777776777778889988
No 235
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.39 E-value=2.9e-11 Score=118.26 Aligned_cols=311 Identities=15% Similarity=0.211 Sum_probs=208.7
Q ss_pred cCccccccceeecCCCccccCCCCcccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCC---CCeeeE
Q 007411 275 KEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN---SGKCMR 351 (604)
Q Consensus 275 ~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~---~~~~~~ 351 (604)
+...|...|.|+--.....-+...-+. ..+++++.+.+. ...|+.|-..|++.-+.+.. ....++
T Consensus 41 ~~s~drtvrv~lkrds~q~wpsI~~~m-----------P~~~~~~~y~~e-~~~L~vg~~ngtvtefs~sedfnkm~~~r 108 (404)
T KOG1409|consen 41 SVSEDRTVRVWLKRDSGQYWPSIYHYM-----------PSPCSAMEYVSE-SRRLYVGQDNGTVTEFALSEDFNKMTFLK 108 (404)
T ss_pred EccccceeeeEEeccccccCchhhhhC-----------CCCceEeeeecc-ceEEEEEEecceEEEEEhhhhhhhcchhh
Confidence 345677889887655443333332222 345788889888 78899999999999887743 335667
Q ss_pred EecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeC-
Q 007411 352 TYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDM- 430 (604)
Q Consensus 352 ~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~- 430 (604)
.+..|...|..+-|+-...++++++.|..+.---.+.+..+..+..........+.. .+.+.|...|.|....+
T Consensus 109 ~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~-----~~~fvGd~~gqvt~lr~~ 183 (404)
T KOG1409|consen 109 DYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDA-----LYAFVGDHSGQITMLKLE 183 (404)
T ss_pred hhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceee-----EEEEecccccceEEEEEe
Confidence 788999999999999999999999999888766666666554432221111111111 14556666677666544
Q ss_pred -CCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCe
Q 007411 431 -NTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQ 509 (604)
Q Consensus 431 -~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~ 509 (604)
..-.++.++.+|.+.+.+++|.+....|.+|..|..+.+||+.-..-+......|...|..+...+--+.+.+++.||.
T Consensus 184 ~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~ 263 (404)
T KOG1409|consen 184 QNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGG 263 (404)
T ss_pred ecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCe
Confidence 4456788999999999999999999999999999999999998877777777789999999998888899999999999
Q ss_pred EEEEEcCCceeecccc--------------------------cccCcc---cccceEEEEEcCCCCEEEEEcCCCcEEEE
Q 007411 510 ILIYSTRERFQLNKKK--------------------------RFAGHI---VAGYACQVNFSPDGRFVMSGDGEGKCWFW 560 (604)
Q Consensus 510 I~iwd~~~~~~~~~~~--------------------------~~~~~~---~~~~v~~l~~spdg~~L~sgs~dG~I~iw 560 (604)
|.+|+++........- .+..|. .+..++..+-+....+... +..-.+++-
T Consensus 264 i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~m-g~e~~vR~~ 342 (404)
T KOG1409|consen 264 IVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTM-GFEFSVRVC 342 (404)
T ss_pred EEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccc-cceeEEEEe
Confidence 9999987532211000 001111 1122222222222222222 222234444
Q ss_pred eCC-------CCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007411 561 DWK-------SCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 561 d~~-------t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
|.- +..++..+..-...|+.+.+.. .-.+|+|+|.|..|+|||
T Consensus 343 ~~c~~~i~~~~~t~LA~phei~tgItamhlqe-tlglLvTsG~~Rvi~iwd 392 (404)
T KOG1409|consen 343 DSCYPTIKDEERTPLAIPHEIKTGITAMHLQE-TLGLLVTSGTDRVIKIWD 392 (404)
T ss_pred cccchhhhcCCCCccccccccccceeEEEhhh-hccceeecCCceEEEEEe
Confidence 421 1123443332223578887766 556899999999999998
No 236
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.39 E-value=8.2e-12 Score=128.23 Aligned_cols=168 Identities=17% Similarity=0.321 Sum_probs=125.3
Q ss_pred cCCCEEEEEECCCcEEEEECCCCcEEEEe-----eCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCC---------
Q 007411 367 NDGTKFLTASYDKNIKYWDTETGQVIRTF-----STGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT--------- 432 (604)
Q Consensus 367 pdg~~L~s~s~Dg~I~vWD~~t~~~i~~~-----~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s--------- 432 (604)
+.+--|+.|-.-|.|.+.|....+..+.+ .......++.|.+.++ .+|+++..+|.+++||..-
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~--~~Fl~a~~sGnlyly~~~~~~~~t~p~~ 260 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSD--SLFLVAHASGNLYLYDKEIVCGATAPSY 260 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCC--ceEEEEEecCceEEeeccccccCCCCcc
Confidence 45667888888899999987663322222 1235567888888655 7899999999999997631
Q ss_pred -----Cc--------------eEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEE
Q 007411 433 -----KE--------------ITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSIS 493 (604)
Q Consensus 433 -----~~--------------~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~ 493 (604)
+. ++..+.--.+.|+.++|+|||++|++.|.||.+||||+.+...+.... ..-+...|++
T Consensus 261 ~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mk-SYFGGLLCvc 339 (636)
T KOG2394|consen 261 QALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMK-SYFGGLLCVC 339 (636)
T ss_pred cccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHH-hhccceEEEE
Confidence 11 111111234578999999999999999999999999998876655443 3567899999
Q ss_pred EcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEc
Q 007411 494 LHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 542 (604)
Q Consensus 494 ~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s 542 (604)
|+|||+||++|+.|.-|.||.+..+..+ ..-.+| ..+|..++|.
T Consensus 340 WSPDGKyIvtGGEDDLVtVwSf~erRVV---ARGqGH--kSWVs~VaFD 383 (636)
T KOG2394|consen 340 WSPDGKYIVTGGEDDLVTVWSFEERRVV---ARGQGH--KSWVSVVAFD 383 (636)
T ss_pred EcCCccEEEecCCcceEEEEEeccceEE---Eecccc--ccceeeEeec
Confidence 9999999999999999999999876544 223344 7888888887
No 237
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=2.2e-10 Score=123.76 Aligned_cols=203 Identities=15% Similarity=0.128 Sum_probs=134.6
Q ss_pred EEecCCCCCeEEEEEcCCCCCEEEEEEC---CCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEE-EEECCC--c
Q 007411 307 HTWSGHTKGVSAIRFFPKYGHLILSAGM---DTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFL-TASYDK--N 380 (604)
Q Consensus 307 ~tl~gH~~~V~~l~fsp~~g~~L~sgs~---Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~-s~s~Dg--~ 380 (604)
+.+..|...+.+.+|+|+ ++.|+..+. ...|.+|++ ..++. ..+..+.+...++.|+|+|+.|+ +.+.+| .
T Consensus 197 ~~lt~~~~~v~~p~wSpD-g~~la~~s~~~~~~~l~~~dl-~~g~~-~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~ 273 (433)
T PRK04922 197 QTILRSAEPILSPAWSPD-GKKLAYVSFERGRSAIYVQDL-ATGQR-ELVASFRGINGAPSFSPDGRRLALTLSRDGNPE 273 (433)
T ss_pred eEeecCCCccccccCCCC-CCEEEEEecCCCCcEEEEEEC-CCCCE-EEeccCCCCccCceECCCCCEEEEEEeCCCCce
Confidence 445567788999999999 777777663 346999999 44443 23344455566889999999776 445555 5
Q ss_pred EEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCC--eEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEE
Q 007411 381 IKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK--KIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRF 458 (604)
Q Consensus 381 I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg--~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l 458 (604)
|.+||+.+++...............|++++. .++++...+| .|+++|+.+++.... ..+......+.|+|+|++|
T Consensus 274 Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~--~l~f~sd~~g~~~iy~~dl~~g~~~~l-t~~g~~~~~~~~SpDG~~I 350 (433)
T PRK04922 274 IYVMDLGSRQLTRLTNHFGIDTEPTWAPDGK--SIYFTSDRGGRPQIYRVAASGGSAERL-TFQGNYNARASVSPDGKKI 350 (433)
T ss_pred EEEEECCCCCeEECccCCCCccceEECCCCC--EEEEEECCCCCceEEEEECCCCCeEEe-ecCCCCccCEEECCCCCEE
Confidence 9999999887654333222334566766542 3444443444 477788877764332 2233445578999999999
Q ss_pred EEEeCCC---cEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcC---CeEEEEEcCCc
Q 007411 459 VTSSDDK---SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD---NQILIYSTRER 518 (604)
Q Consensus 459 ~sgs~Dg---~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~D---g~I~iwd~~~~ 518 (604)
+..+.++ .|.+||+.++... .+.. ........|+|+|++|+..+.+ +.|.++++...
T Consensus 351 a~~~~~~~~~~I~v~d~~~g~~~-~Lt~--~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 351 AMVHGSGGQYRIAVMDLSTGSVR-TLTP--GSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred EEEECCCCceeEEEEECCCCCeE-ECCC--CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 8765443 5999999877654 3322 2234567999999988877754 45777777543
No 238
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.34 E-value=6e-11 Score=113.27 Aligned_cols=147 Identities=20% Similarity=0.371 Sum_probs=104.8
Q ss_pred eEEEEeCCCCEEEEEeC----------CCcEEEEECCC-CeEEEEeecCCCCcccEEEEcCCCCEEEEEE--cCCeEEEE
Q 007411 447 NTITFVDSNRRFVTSSD----------DKSLRVWEFGI-PVVIKYISEPHMHSMPSISLHPNTNWLAAQS--LDNQILIY 513 (604)
Q Consensus 447 ~~i~~sp~~~~l~sgs~----------Dg~I~iwdl~~-~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s--~Dg~I~iw 513 (604)
..+.|+++|.+|++-.. -+...+|.++. ......+.....++|..++|+|+|+.|++.. .++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 45778888887665433 13355555533 2334444444556799999999999876653 56799999
Q ss_pred EcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcC---CCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCE
Q 007411 514 STRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG---EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSK 590 (604)
Q Consensus 514 d~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~---dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~ 590 (604)
|++. ..+ ..+. ...+..+.|||+|++|++++. .|.|.|||..+.+.+.... |. .++.++|+| ++++
T Consensus 89 d~~~-~~i---~~~~----~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsP-dGr~ 157 (194)
T PF08662_consen 89 DVKG-KKI---FSFG----TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSP-DGRY 157 (194)
T ss_pred cCcc-cEe---Eeec----CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcC-CCCE
Confidence 9962 222 2222 245567999999999998864 4779999999999888775 33 478999999 7888
Q ss_pred EEEEeC------CCcEEEeC
Q 007411 591 VATCGW------DGLIKYWD 604 (604)
Q Consensus 591 l~tgg~------DG~I~vWD 604 (604)
|+|+.. |..++||+
T Consensus 158 ~~ta~t~~r~~~dng~~Iw~ 177 (194)
T PF08662_consen 158 LATATTSPRLRVDNGFKIWS 177 (194)
T ss_pred EEEEEeccceeccccEEEEE
Confidence 888875 78888885
No 239
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=4.3e-10 Score=121.62 Aligned_cols=205 Identities=15% Similarity=0.122 Sum_probs=138.9
Q ss_pred eEEecCCCCCeEEEEEcCCCCCEEEEEEC---CCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEE-EEECCCc-
Q 007411 306 VHTWSGHTKGVSAIRFFPKYGHLILSAGM---DTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFL-TASYDKN- 380 (604)
Q Consensus 306 i~tl~gH~~~V~~l~fsp~~g~~L~sgs~---Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~-s~s~Dg~- 380 (604)
.+.+..|...|.+.+|+|+ |+.|+..+. +..|.+||+ .++.. ..+..+.+.+.+.+|+|||+.|+ +.+.++.
T Consensus 194 ~~~lt~~~~~v~~p~wSpD-G~~lay~s~~~g~~~i~~~dl-~~g~~-~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~ 270 (435)
T PRK05137 194 VRYLTDGSSLVLTPRFSPN-RQEITYMSYANGRPRVYLLDL-ETGQR-ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNT 270 (435)
T ss_pred cEEEecCCCCeEeeEECCC-CCEEEEEEecCCCCEEEEEEC-CCCcE-EEeecCCCcccCcEECCCCCEEEEEEecCCCc
Confidence 3456678889999999999 777766653 468999999 44543 34556677788999999999876 5555555
Q ss_pred -EEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcC--CeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCE
Q 007411 381 -IKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD--KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRR 457 (604)
Q Consensus 381 -I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~d--g~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~ 457 (604)
|.+||+.++................|++++. .++++...+ ..|+++|+..++... +..+.+.+....|+|+++.
T Consensus 271 ~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~--~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~~~~~~~~~~SpdG~~ 347 (435)
T PRK05137 271 DIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGS--QIVFESDRSGSPQLYVMNADGSNPRR-ISFGGGRYSTPVWSPRGDL 347 (435)
T ss_pred eEEEEECCCCceEEccCCCCccCceeEcCCCC--EEEEEECCCCCCeEEEEECCCCCeEE-eecCCCcccCeEECCCCCE
Confidence 7778998887654333333344566776542 344443333 368889987765543 3334556777899999999
Q ss_pred EEEEeCC---CcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcC------CeEEEEEcCCce
Q 007411 458 FVTSSDD---KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD------NQILIYSTRERF 519 (604)
Q Consensus 458 l~sgs~D---g~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~D------g~I~iwd~~~~~ 519 (604)
|+..+.+ ..|.+||+..... ..+.. ...+..+.|+|+|+.|+..+.+ ..+.++++..+.
T Consensus 348 ia~~~~~~~~~~i~~~d~~~~~~-~~lt~--~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 348 IAFTKQGGGQFSIGVMKPDGSGE-RILTS--GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred EEEEEcCCCceEEEEEECCCCce-EeccC--CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence 9887653 3588888755433 33322 2346788999999998876643 257777876543
No 240
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=5e-10 Score=120.64 Aligned_cols=220 Identities=15% Similarity=0.135 Sum_probs=142.1
Q ss_pred EecCCCCCeEEEEEcCCCCCEEEEEE---CCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEE-ECCC--cE
Q 007411 308 TWSGHTKGVSAIRFFPKYGHLILSAG---MDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTA-SYDK--NI 381 (604)
Q Consensus 308 tl~gH~~~V~~l~fsp~~g~~L~sgs---~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~-s~Dg--~I 381 (604)
.+..+...+.+.+|+|+ |+.|+..+ .+..|.+|++ ..++.. .+......+..+.|+|||+.|+.. +.+| .|
T Consensus 193 ~lt~~~~~~~~p~wSPD-G~~la~~s~~~g~~~i~i~dl-~~G~~~-~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I 269 (429)
T PRK03629 193 VVHRSPQPLMSPAWSPD-GSKLAYVTFESGRSALVIQTL-ANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNL 269 (429)
T ss_pred EeecCCCceeeeEEcCC-CCEEEEEEecCCCcEEEEEEC-CCCCeE-EccCCCCCcCCeEECCCCCEEEEEEcCCCCcEE
Confidence 34456778999999999 77776543 2457999998 455332 223333445678999999988865 4444 58
Q ss_pred EEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEE-cCC--eEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEE
Q 007411 382 KYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGM-SDK--KIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRF 458 (604)
Q Consensus 382 ~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~-~dg--~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l 458 (604)
.+||+.+++...............|+|++ ..|+..+ .++ .|+++|+.+++.. .+..+.....+..|+|+|++|
T Consensus 270 ~~~d~~tg~~~~lt~~~~~~~~~~wSPDG---~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~SpDG~~I 345 (429)
T PRK03629 270 YVMDLASGQIRQVTDGRSNNTEPTWFPDS---QNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFM 345 (429)
T ss_pred EEEECCCCCEEEccCCCCCcCceEECCCC---CEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEE
Confidence 99999988776554444445566777754 3444444 334 5666677776543 333344556788999999998
Q ss_pred EEEeCC---CcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCe---EEEEEcCCceeecccccccCccc
Q 007411 459 VTSSDD---KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQ---ILIYSTRERFQLNKKKRFAGHIV 532 (604)
Q Consensus 459 ~sgs~D---g~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~---I~iwd~~~~~~~~~~~~~~~~~~ 532 (604)
+..+.+ ..|.+||+.++... .+... .......|+|+|++|+..+.++. +.++++.... ... +.++
T Consensus 346 a~~~~~~g~~~I~~~dl~~g~~~-~Lt~~--~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~-~~~---l~~~-- 416 (429)
T PRK03629 346 VMVSSNGGQQHIAKQDLATGGVQ-VLTDT--FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF-KAR---LPAT-- 416 (429)
T ss_pred EEEEccCCCceEEEEECCCCCeE-EeCCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC-eEE---CccC--
Confidence 876643 35888999877543 33322 23456789999999999988764 5666764432 222 2222
Q ss_pred ccceEEEEEcC
Q 007411 533 AGYACQVNFSP 543 (604)
Q Consensus 533 ~~~v~~l~~sp 543 (604)
.+.+...+|+|
T Consensus 417 ~~~~~~p~Wsp 427 (429)
T PRK03629 417 DGQVKFPAWSP 427 (429)
T ss_pred CCCcCCcccCC
Confidence 23455577776
No 241
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.34 E-value=1.5e-10 Score=110.50 Aligned_cols=118 Identities=14% Similarity=0.339 Sum_probs=90.4
Q ss_pred cCCceeEEEEeCCCCEEEEE--eCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcC---CeEEEEEcC
Q 007411 442 HLGAVNTITFVDSNRRFVTS--SDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD---NQILIYSTR 516 (604)
Q Consensus 442 h~~~V~~i~~sp~~~~l~sg--s~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~D---g~I~iwd~~ 516 (604)
..++|.+++|+|+++.|++. ..++.|.+||++ ...+..+ ....+..+.|+|+|++|++++.+ |.|.+||.+
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~---~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~ 133 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSF---GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVR 133 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEee---cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECC
Confidence 45679999999999987654 456799999996 4455544 34577899999999999998754 669999999
Q ss_pred CceeecccccccCcccccceEEEEEcCCCCEEEEEcC------CCcEEEEeCCCCeeEEEE
Q 007411 517 ERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG------EGKCWFWDWKSCKVFRTL 571 (604)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~------dG~I~iwd~~t~~~~~~l 571 (604)
+...+.... ...+..++|||+|++|+++.. |+.++||+. .|+++...
T Consensus 134 ~~~~i~~~~-------~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~ 186 (194)
T PF08662_consen 134 KKKKISTFE-------HSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF-QGRLLYKK 186 (194)
T ss_pred CCEEeeccc-------cCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEe-cCeEeEec
Confidence 766553322 133578999999999998874 678999997 46665544
No 242
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.34 E-value=6.2e-09 Score=108.95 Aligned_cols=266 Identities=14% Similarity=0.228 Sum_probs=169.2
Q ss_pred CCCeEEEEEcCCCCCEEEEEEC----CCcEEEEecCCC-Ce--eeEEecCCCCceeeEEEccCCCEEEEEEC-CCcEEEE
Q 007411 313 TKGVSAIRFFPKYGHLILSAGM----DTKVKIWDVVNS-GK--CMRTYMGHSKAVRDISFCNDGTKFLTASY-DKNIKYW 384 (604)
Q Consensus 313 ~~~V~~l~fsp~~g~~L~sgs~----Dg~I~IWd~~~~-~~--~~~~~~~h~~~V~~l~fspdg~~L~s~s~-Dg~I~vW 384 (604)
......|+++|+ +++|++... +|.|..|.+... +. .+............++++|++++|+++.+ +|.|.++
T Consensus 36 ~~~Ps~l~~~~~-~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~ 114 (345)
T PF10282_consen 36 GENPSWLAVSPD-GRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVF 114 (345)
T ss_dssp SSSECCEEE-TT-SSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCCCceEEEEeC-CCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEE
Confidence 344667889998 888888876 579999998544 33 33333334455678999999999999986 8999999
Q ss_pred ECCC-CcEEEE---ee-----------CCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCc--eEE--EEc-CcCC
Q 007411 385 DTET-GQVIRT---FS-----------TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE--ITQ--EYD-QHLG 444 (604)
Q Consensus 385 D~~t-~~~i~~---~~-----------~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~--~~~--~~~-~h~~ 444 (604)
++.. |..... +. ....+..+.+.|++ ..++++......|++|++.... +.. .+. ....
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg--~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~ 192 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDG--RFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGS 192 (345)
T ss_dssp EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTS--SEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTS
T ss_pred EccCCcccceeeeecccCCCCCcccccccccceeEEECCCC--CEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCC
Confidence 9987 433222 21 12334566666644 3556666667799999997654 322 222 3445
Q ss_pred ceeEEEEeCCCCEEEEE-eCCCcEEEEECC--CCe--EEEEeecC---C--CCcccEEEEcCCCCEEEEEE-cCCeEEEE
Q 007411 445 AVNTITFVDSNRRFVTS-SDDKSLRVWEFG--IPV--VIKYISEP---H--MHSMPSISLHPNTNWLAAQS-LDNQILIY 513 (604)
Q Consensus 445 ~V~~i~~sp~~~~l~sg-s~Dg~I~iwdl~--~~~--~~~~~~~~---~--~~~v~~l~~sp~g~~l~s~s-~Dg~I~iw 513 (604)
....+.|+|+++++++. -.++.|.++++. .+. .+..+... . ......|.++|+|++|.++. ..+.|.+|
T Consensus 193 GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf 272 (345)
T PF10282_consen 193 GPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVF 272 (345)
T ss_dssp SEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEE
T ss_pred CCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEE
Confidence 67899999999887655 457789999988 332 22222211 1 12467899999999988876 45789999
Q ss_pred EcCCc-eeecccccccCcccccceEEEEEcCCCCEEEEEc-CCCcEEEEeC--CCCeeEEEEe-cCCCcEEEEEE
Q 007411 514 STRER-FQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD-GEGKCWFWDW--KSCKVFRTLK-CHEGVCIGCEW 583 (604)
Q Consensus 514 d~~~~-~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs-~dG~I~iwd~--~t~~~~~~l~-~h~~~V~~v~~ 583 (604)
++... ..+.....+... ......++++|+|++|+++. .++.|.+|++ .+|.+...-. ..-....||.|
T Consensus 273 ~~d~~~g~l~~~~~~~~~--G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 273 DLDPATGTLTLVQTVPTG--GKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EECTTTTTEEEEEEEEES--SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EEecCCCceEEEEEEeCC--CCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 99432 222222222211 23467899999999999876 5678999876 5777654432 22334566655
No 243
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.34 E-value=4.7e-09 Score=108.01 Aligned_cols=259 Identities=15% Similarity=0.098 Sum_probs=161.3
Q ss_pred CcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEEC----------CCcEEEEECCCCcEEEEeeCCCcce---
Q 007411 336 TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASY----------DKNIKYWDTETGQVIRTFSTGKIPY--- 402 (604)
Q Consensus 336 g~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~----------Dg~I~vWD~~t~~~i~~~~~~~~~~--- 402 (604)
++|.+.|. .+.+.+.++..-..+- .+ ++|||+.|+++.. +..|.+||+.+++.+..+..+..+.
T Consensus 27 ~~v~ViD~-~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDG-EAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEEC-CCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence 89999999 6788888776443332 34 9999998887765 7899999999999999988755544
Q ss_pred -----EEEEccCCCCCcEEEEEEc-CCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCe
Q 007411 403 -----VVKLNPDDDKQNILLAGMS-DKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPV 476 (604)
Q Consensus 403 -----~~~~~~~~~~~~~lvsg~~-dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~ 476 (604)
.+.+++++. .++++--. +..|.++|+.+++.+.++.-.. ...-...+ +...+ +-+.||......+....
T Consensus 104 ~~~~~~~~ls~dgk--~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~-e~~~~-~~~~Dg~~~~v~~d~~g 178 (352)
T TIGR02658 104 GTYPWMTSLTPDNK--TLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTA-NDTFF-MHCRDGSLAKVGYGTKG 178 (352)
T ss_pred cCccceEEECCCCC--EEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEec-CCccE-EEeecCceEEEEecCCC
Confidence 677777553 34444435 8999999999999998886422 21112222 22222 22344554443332211
Q ss_pred EE--EEee--cCCCCcc-cEEEEcC-CCCEEEEEEcCCeEEEEEcCCceeec--ccccccC-----cccccceEEEEEcC
Q 007411 477 VI--KYIS--EPHMHSM-PSISLHP-NTNWLAAQSLDNQILIYSTRERFQLN--KKKRFAG-----HIVAGYACQVNFSP 543 (604)
Q Consensus 477 ~~--~~~~--~~~~~~v-~~l~~sp-~g~~l~s~s~Dg~I~iwd~~~~~~~~--~~~~~~~-----~~~~~~v~~l~~sp 543 (604)
.. .... .....++ ..-.+.+ +++++.+... |.|.+.|+....... ....+.. ....+...-+++++
T Consensus 179 ~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~ 257 (352)
T TIGR02658 179 NPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR 257 (352)
T ss_pred ceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC
Confidence 11 1110 0100000 0003455 7887777666 999999964432111 1111110 11123333499999
Q ss_pred CCCEEEEEc----------CCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEE-EEeCCCcEEEeC
Q 007411 544 DGRFVMSGD----------GEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVA-TCGWDGLIKYWD 604 (604)
Q Consensus 544 dg~~L~sgs----------~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~-tgg~DG~I~vWD 604 (604)
+++.+++.. ..+.|.++|..+++.+..+.. ...+..++++|++..+|+ +...++.|.+.|
T Consensus 258 dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD 328 (352)
T TIGR02658 258 ARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFD 328 (352)
T ss_pred CCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEE
Confidence 999988742 225799999999999999885 346899999995442555 444688898876
No 244
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=2.7e-10 Score=117.59 Aligned_cols=269 Identities=19% Similarity=0.289 Sum_probs=168.1
Q ss_pred eEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEEC-----------CCcEEEE
Q 007411 316 VSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASY-----------DKNIKYW 384 (604)
Q Consensus 316 V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~-----------Dg~I~vW 384 (604)
=+-++|||. |.+|+|-..-| |.+|-- .+-..++.+ .|. .|.-+.|||..++|+|-+. ...|+||
T Consensus 213 etyv~wSP~-GTYL~t~Hk~G-I~lWGG-~~f~r~~RF-~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IW 287 (698)
T KOG2314|consen 213 ETYVRWSPK-GTYLVTFHKQG-IALWGG-ESFDRIQRF-YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIW 287 (698)
T ss_pred eeeEEecCC-ceEEEEEeccc-eeeecC-ccHHHHHhc-cCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEE
Confidence 356899999 99999988766 889965 222333333 354 4889999999999998764 2579999
Q ss_pred ECCCCcEEEEeeCCCcc----eEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEE
Q 007411 385 DTETGQVIRTFSTGKIP----YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVT 460 (604)
Q Consensus 385 D~~t~~~i~~~~~~~~~----~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~s 460 (604)
|+.+|...+.|...... ....|+.++ . +++......|.||+..+..++..-.-....|....|+|.++.|+-
T Consensus 288 DI~tG~lkrsF~~~~~~~~~WP~frWS~Dd---K-y~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAY 363 (698)
T KOG2314|consen 288 DIATGLLKRSFPVIKSPYLKWPIFRWSHDD---K-YFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAY 363 (698)
T ss_pred EccccchhcceeccCCCccccceEEeccCC---c-eeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEE
Confidence 99999999988773322 245566544 3 444455578999988764443322223345556666666555442
Q ss_pred EeC----------------CC-----------------------------------------cEEEEECCCCeEEEEeec
Q 007411 461 SSD----------------DK-----------------------------------------SLRVWEFGIPVVIKYISE 483 (604)
Q Consensus 461 gs~----------------Dg-----------------------------------------~I~iwdl~~~~~~~~~~~ 483 (604)
=+. -. .+-|+.++....... ..
T Consensus 364 wtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve-~v 442 (698)
T KOG2314|consen 364 WTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVE-VV 442 (698)
T ss_pred EcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCce-ee
Confidence 110 00 011111111100000 01
Q ss_pred CCCCcccEEEEcCCCCEEEEEEcC---CeEEEEEcCC-ceeecccccccCcccccceEEEEEcCCCCEEEEE---cCCCc
Q 007411 484 PHMHSMPSISLHPNTNWLAAQSLD---NQILIYSTRE-RFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSG---DGEGK 556 (604)
Q Consensus 484 ~~~~~v~~l~~sp~g~~l~s~s~D---g~I~iwd~~~-~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sg---s~dG~ 556 (604)
.....|...+|-|.|+.+++-+.. .++.+|.+.+ ......++.+. ...++.+.|+|.|++++.+ +..|.
T Consensus 443 elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d----k~~~N~vfwsPkG~fvvva~l~s~~g~ 518 (698)
T KOG2314|consen 443 ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD----KKFANTVFWSPKGRFVVVAALVSRRGD 518 (698)
T ss_pred ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc----ccccceEEEcCCCcEEEEEEecccccc
Confidence 234567788999999888776643 6788888773 22222223322 2445679999999999865 45789
Q ss_pred EEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCc
Q 007411 557 CWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGL 599 (604)
Q Consensus 557 I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~ 599 (604)
+.++|.....+..+-....-..+.+.|.| .+++++|++.-+.
T Consensus 519 l~F~D~~~a~~k~~~~~eh~~at~veWDP-tGRYvvT~ss~wr 560 (698)
T KOG2314|consen 519 LEFYDTDYADLKDTASPEHFAATEVEWDP-TGRYVVTSSSSWR 560 (698)
T ss_pred eEEEecchhhhhhccCccccccccceECC-CCCEEEEeeehhh
Confidence 99999875333222222222457899999 8899999987544
No 245
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.30 E-value=1.6e-10 Score=119.80 Aligned_cols=243 Identities=16% Similarity=0.186 Sum_probs=162.8
Q ss_pred CCCCceeeEEEccCCCEEE-EEECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCC
Q 007411 355 GHSKAVRDISFCNDGTKFL-TASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK 433 (604)
Q Consensus 355 ~h~~~V~~l~fspdg~~L~-s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~ 433 (604)
.|...-+.|..+|||++++ +|.+--.|++||+..-..... .+-...++.|.+..++-..++.-..|..|-+...- |
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFE--RhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~-G 125 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFE--RHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY-G 125 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeee--ecccccceeEEEeccchhhheEeecCceeeehhhc-C
Confidence 5778889999999999865 667788999999986554332 23233334443333332334444455555443211 1
Q ss_pred ceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEE
Q 007411 434 EITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIY 513 (604)
Q Consensus 434 ~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iw 513 (604)
... .+ .-...-..++++.-.--|++++....|+-+++..+..+..+.. ....++++.+++...+|++|+.+|.|.+|
T Consensus 126 ~hy-~~-RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~-~~~~lN~v~in~~hgLla~Gt~~g~VEfw 202 (703)
T KOG2321|consen 126 RHY-RT-RIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFET-DSGELNVVSINEEHGLLACGTEDGVVEFW 202 (703)
T ss_pred eee-ee-ecCcCCccccccCCCccEEEeecCcceEEEEcccccccccccc-ccccceeeeecCccceEEecccCceEEEe
Confidence 100 00 0112234455553333344555556788899998887776653 45789999999999999999999999999
Q ss_pred EcCCceeeccccc------ccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEe-cCCCcEEEEEEecC
Q 007411 514 STRERFQLNKKKR------FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK-CHEGVCIGCEWHPL 586 (604)
Q Consensus 514 d~~~~~~~~~~~~------~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~-~h~~~V~~v~~sp~ 586 (604)
|.++...+..+.. ..+......|+++.|+.+|-.+++|.++|.|+|||+++.+++..-. +..-+|..+.|.+.
T Consensus 203 DpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~ 282 (703)
T KOG2321|consen 203 DPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDT 282 (703)
T ss_pred cchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeeccccc
Confidence 9988765433321 2222234458999999999999999999999999999998876543 22348999999874
Q ss_pred C-CCEEEEEeCCCcEEEeC
Q 007411 587 E-QSKVATCGWDGLIKYWD 604 (604)
Q Consensus 587 ~-~~~l~tgg~DG~I~vWD 604 (604)
+ +..|+|+. ...++|||
T Consensus 283 ~~q~~v~S~D-k~~~kiWd 300 (703)
T KOG2321|consen 283 DQQNKVVSMD-KRILKIWD 300 (703)
T ss_pred CCCceEEecc-hHHhhhcc
Confidence 3 34566654 56789997
No 246
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.29 E-value=2.6e-11 Score=138.93 Aligned_cols=252 Identities=15% Similarity=0.277 Sum_probs=184.8
Q ss_pred CCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcceEEE
Q 007411 326 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVK 405 (604)
Q Consensus 326 g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~ 405 (604)
++.+.....++...-|.....+ ..+..+-..|.++.=+|...+.+||+.||.|++|....++.+..+.......+..
T Consensus 2180 s~~~~~~n~~~~~~tq~~~~~~---~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr 2256 (2439)
T KOG1064|consen 2180 SNRFTPSNLPWLGSTQTSRGAS---VMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTR 2256 (2439)
T ss_pred cccCCcccCCccccceecccce---eEeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhh
Confidence 3444445556666666552222 2233456778899999988999999999999999999999998887766544444
Q ss_pred EccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEE---eCCCcEEEEECCCCeEEEEee
Q 007411 406 LNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTS---SDDKSLRVWEFGIPVVIKYIS 482 (604)
Q Consensus 406 ~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sg---s~Dg~I~iwdl~~~~~~~~~~ 482 (604)
..+.. .++.+.++..||.|.+|.+. .++....+.|....+.+.|.. ..+++. ++++.+.+||...+.....+.
T Consensus 2257 ~~f~~-qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~ 2332 (2439)
T KOG1064|consen 2257 SRFNH-QGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH 2332 (2439)
T ss_pred hhhcc-cCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee
Confidence 43332 44678899999999999987 667777888999999999976 456655 457899999976554444444
Q ss_pred cCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeC
Q 007411 483 EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 562 (604)
Q Consensus 483 ~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~ 562 (604)
..|.+.++++++.|....|++|+.+|.|++||++..+.....+. +. ...++++|+..|.|+||++
T Consensus 2333 ~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~--------------~~-~~~~f~~~ss~g~ikIw~~ 2397 (2439)
T KOG1064|consen 2333 TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA--------------LD-TREYFVTGSSEGNIKIWRL 2397 (2439)
T ss_pred eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh--------------hh-hhheeeccCcccceEEEEc
Confidence 67999999999999999999999999999999987655433332 22 4568999999999999999
Q ss_pred CCCeeEEEEec---CCCc--EEEEEEecCCCCEEEEEeCCCc
Q 007411 563 KSCKVFRTLKC---HEGV--CIGCEWHPLEQSKVATCGWDGL 599 (604)
Q Consensus 563 ~t~~~~~~l~~---h~~~--V~~v~~sp~~~~~l~tgg~DG~ 599 (604)
....++.++.. |.+- .+.....-.-...|.+||.||+
T Consensus 2398 s~~~ll~~~p~e~ak~gfFr~~g~Q~~v~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2398 SEFGLLHTFPSEHAKQGFFRNIGMQINVGQCNRIFSCGADGT 2439 (2439)
T ss_pred cccchhhcCchhhcccchhhhcCceeeeccCceEEEecCCCC
Confidence 98877777652 2221 1112222223457999999985
No 247
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.28 E-value=3.7e-09 Score=112.17 Aligned_cols=257 Identities=16% Similarity=0.134 Sum_probs=170.1
Q ss_pred CCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceee-EEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcceEE
Q 007411 326 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRD-ISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVV 404 (604)
Q Consensus 326 g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~-l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~ 404 (604)
+..++.++.+|.+..+|. .+++.+....... .+.+ ... .+..++.++.++.|..||..+|+.+..+.........
T Consensus 105 ~~~v~v~~~~g~l~ald~-~tG~~~W~~~~~~-~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~ 180 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDA-EDGKELWRAKLSS-EVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTL 180 (377)
T ss_pred CCEEEEEcCCCEEEEEEC-CCCcEeeeeccCc-eeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceee
Confidence 567888889999999998 6777776654322 2221 112 3456777888999999999999998887654332111
Q ss_pred E--EccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCC----c------e-eEEEEeCCCCEEEEEeCCCcEEEEE
Q 007411 405 K--LNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLG----A------V-NTITFVDSNRRFVTSSDDKSLRVWE 471 (604)
Q Consensus 405 ~--~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~----~------V-~~i~~sp~~~~l~sgs~Dg~I~iwd 471 (604)
. ..|.-.+ ..++++..++.+..+|+++|+.+........ . + .+..+ .+..+++++.+|.++.||
T Consensus 181 ~~~~sp~~~~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d 257 (377)
T TIGR03300 181 RGSASPVIAD-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALD 257 (377)
T ss_pred cCCCCCEEEC-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEE
Confidence 1 0010011 3578888899999999999987765431110 0 1 11112 245788888899999999
Q ss_pred CCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEE
Q 007411 472 FGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSG 551 (604)
Q Consensus 472 l~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sg 551 (604)
..+++.+-..... ...... ..+..+++++.+|.|..+|..++..+.....+.+.....+ .. .+..|+++
T Consensus 258 ~~tG~~~W~~~~~---~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp----~i--~g~~l~~~ 326 (377)
T TIGR03300 258 LRSGRVLWKRDAS---SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAP----AV--VGGYLVVG 326 (377)
T ss_pred CCCCcEEEeeccC---CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccC----EE--ECCEEEEE
Confidence 9988766554311 112222 2467788888999999999988766544323222211111 11 36789999
Q ss_pred cCCCcEEEEeCCCCeeEEEEecCCCcEEEE-EEecCCCCEEEEEeCCCcEEEe
Q 007411 552 DGEGKCWFWDWKSCKVFRTLKCHEGVCIGC-EWHPLEQSKVATCGWDGLIKYW 603 (604)
Q Consensus 552 s~dG~I~iwd~~t~~~~~~l~~h~~~V~~v-~~sp~~~~~l~tgg~DG~I~vW 603 (604)
+.+|.|+++|..+++.+..++.+...+..- .+. + ..|+.++.||.|..|
T Consensus 327 ~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~--~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 327 DFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV--G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred eCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE--C-CEEEEEeCCceEEEe
Confidence 999999999999999999998777544333 333 2 358889999999765
No 248
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.27 E-value=4.6e-11 Score=122.67 Aligned_cols=173 Identities=23% Similarity=0.377 Sum_probs=136.8
Q ss_pred eeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCC------eeeEEecCCCCceeeEEEccCCCEEEEEECC
Q 007411 305 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG------KCMRTYMGHSKAVRDISFCNDGTKFLTASYD 378 (604)
Q Consensus 305 ~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~------~~~~~~~~h~~~V~~l~fspdg~~L~s~s~D 378 (604)
-+..|.||+..|..+.--.+ .+-+++++.|.+|++|.+...+ .|..+++.|..+|.++.|-.+-+.++++ |
T Consensus 727 rL~nf~GH~~~iRai~AidN-ENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D 803 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDN-ENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--D 803 (1034)
T ss_pred eeecccCcHHHhHHHHhccc-ccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--c
Confidence 35678899999999987666 7889999999999999995433 4778999999999999999988877765 7
Q ss_pred CcEEEEECCCCcEEEEee---CCCcceEEEEccCCCCCcEEEEE-EcCCeEEEEeCCCCceEEEEcC-----cCCceeEE
Q 007411 379 KNIKYWDTETGQVIRTFS---TGKIPYVVKLNPDDDKQNILLAG-MSDKKIVQWDMNTKEITQEYDQ-----HLGAVNTI 449 (604)
Q Consensus 379 g~I~vWD~~t~~~i~~~~---~~~~~~~~~~~~~~~~~~~lvsg-~~dg~I~iwD~~s~~~~~~~~~-----h~~~V~~i 449 (604)
|-|.+||.--+..+.... .......+...++-+ .+++++| +...+|+++|.++.+.+.+++. ..+.+.++
T Consensus 804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~-~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~i 882 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVD-RHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAI 882 (1034)
T ss_pred CcceeecccccchhHhhhcCcccCCCceeEecccCc-chheeeeccchhhheeeecccccceeeEEeccCCCCchheeEE
Confidence 899999998887665332 223334444444422 2556666 6789999999999987776643 44568999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEECCCCeEEEEe
Q 007411 450 TFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYI 481 (604)
Q Consensus 450 ~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~ 481 (604)
++.+.|++++.+-.+|.|.+.|.+++..+...
T Consensus 883 aVa~~GN~lAa~LSnGci~~LDaR~G~vINsw 914 (1034)
T KOG4190|consen 883 AVADKGNKLAAALSNGCIAILDARNGKVINSW 914 (1034)
T ss_pred EeccCcchhhHHhcCCcEEEEecCCCceeccC
Confidence 99999999999999999999999999877644
No 249
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.26 E-value=1.1e-09 Score=117.86 Aligned_cols=199 Identities=12% Similarity=0.131 Sum_probs=126.7
Q ss_pred EEecCCCCCeEEEEEcCCCCCEEEEEECC---CcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEE-EEECCCcEE
Q 007411 307 HTWSGHTKGVSAIRFFPKYGHLILSAGMD---TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFL-TASYDKNIK 382 (604)
Q Consensus 307 ~tl~gH~~~V~~l~fsp~~g~~L~sgs~D---g~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~-s~s~Dg~I~ 382 (604)
+.+..+...+.+.+|+|+ ++.|+..+.+ ..|.+||+ .+++... +....+.+.+..|+|||+.|+ +.+.+|...
T Consensus 189 ~~l~~~~~~v~~p~wSPD-G~~la~~s~~~~~~~I~~~dl-~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~ 265 (427)
T PRK02889 189 QSALSSPEPIISPAWSPD-GTKLAYVSFESKKPVVYVHDL-ATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQ 265 (427)
T ss_pred eEeccCCCCcccceEcCC-CCEEEEEEccCCCcEEEEEEC-CCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCce
Confidence 345577888999999999 7777766542 45999999 4554433 333445667899999999887 567778766
Q ss_pred EEE--CCCCcEEEEeeCC-CcceEEEEccCCCCCcEEEEEEcCCeEEEE--eCCCCceEEEEcCcCCceeEEEEeCCCCE
Q 007411 383 YWD--TETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQW--DMNTKEITQEYDQHLGAVNTITFVDSNRR 457 (604)
Q Consensus 383 vWD--~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iw--D~~s~~~~~~~~~h~~~V~~i~~sp~~~~ 457 (604)
||. +.++. ...+... .......|++++. .+++++..++...+| ++.++...... .+........|+|+|++
T Consensus 266 Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~--~l~f~s~~~g~~~Iy~~~~~~g~~~~lt-~~g~~~~~~~~SpDG~~ 341 (427)
T PRK02889 266 IYTVNADGSG-LRRLTQSSGIDTEPFFSPDGR--SIYFTSDRGGAPQIYRMPASGGAAQRVT-FTGSYNTSPRISPDGKL 341 (427)
T ss_pred EEEEECCCCC-cEECCCCCCCCcCeEEcCCCC--EEEEEecCCCCcEEEEEECCCCceEEEe-cCCCCcCceEECCCCCE
Confidence 665 44444 3334332 2233456766542 444444444555555 55555433222 22333456789999999
Q ss_pred EEEEeCCC---cEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCC---eEEEEEc
Q 007411 458 FVTSSDDK---SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN---QILIYST 515 (604)
Q Consensus 458 l~sgs~Dg---~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg---~I~iwd~ 515 (604)
|+.++.++ .|.+||+..+.... +.. ........|+|+|+.|+..+.++ .+.+.++
T Consensus 342 Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~--~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 342 LAYISRVGGAFKLYVQDLATGQVTA-LTD--TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred EEEEEccCCcEEEEEEECCCCCeEE-ccC--CCCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence 98877654 59999998776443 322 22346789999999988887654 2445555
No 250
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.25 E-value=2.3e-10 Score=126.14 Aligned_cols=200 Identities=14% Similarity=0.225 Sum_probs=160.6
Q ss_pred CceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcc--eEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCce
Q 007411 358 KAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP--YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI 435 (604)
Q Consensus 358 ~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~--~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~ 435 (604)
..|....+..+...++.++.+..+.+||...+.....+...... ++....-+....-++++|+.-+.|.+|+......
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~ 167 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK 167 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC
Confidence 34444555567778898999999999999988887777655433 2333444445557899999999999999984444
Q ss_pred EEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEc
Q 007411 436 TQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYST 515 (604)
Q Consensus 436 ~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~ 515 (604)
-..+.+|.+.|..+.++-+|+++++.|+|.++++|++.+........-+|...+..++++|+ .+++++.|.+.++|+.
T Consensus 168 p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~ 245 (967)
T KOG0974|consen 168 PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV 245 (967)
T ss_pred cceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEec
Confidence 44688999999999999999999999999999999999887776555579999999999998 8999999999999976
Q ss_pred CCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC
Q 007411 516 RERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS 564 (604)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t 564 (604)
.... + ..+.+|. ...+..++..++...+++++.||.+++|++..
T Consensus 246 ~~~~-l---~~y~~h~-g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 246 NGTQ-L---EVYDEHS-GKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ccce-e---hhhhhhh-hcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 5432 2 2556664 35677899999999999999999999999754
No 251
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.24 E-value=3.3e-08 Score=101.80 Aligned_cols=252 Identities=11% Similarity=0.119 Sum_probs=162.5
Q ss_pred ceeEEecCCCCCeEEEEEcCCCCCEEEEEE----------CCCcEEEEecCCCCeeeEEecCCC-------CceeeEEEc
Q 007411 304 RLVHTWSGHTKGVSAIRFFPKYGHLILSAG----------MDTKVKIWDVVNSGKCMRTYMGHS-------KAVRDISFC 366 (604)
Q Consensus 304 ~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs----------~Dg~I~IWd~~~~~~~~~~~~~h~-------~~V~~l~fs 366 (604)
+.+.++..-..+-- + ++|+ ++.|+++. .+..|.+||+ .+.+.+..+.-.. ..-..++++
T Consensus 38 ~v~g~i~~G~~P~~-~-~spD-g~~lyva~~~~~R~~~G~~~d~V~v~D~-~t~~~~~~i~~p~~p~~~~~~~~~~~~ls 113 (352)
T TIGR02658 38 RVLGMTDGGFLPNP-V-VASD-GSFFAHASTVYSRIARGKRTDYVEVIDP-QTHLPIADIELPEGPRFLVGTYPWMTSLT 113 (352)
T ss_pred EEEEEEEccCCCce-e-ECCC-CCEEEEEeccccccccCCCCCEEEEEEC-ccCcEEeEEccCCCchhhccCccceEEEC
Confidence 44455543322222 4 8999 66665554 4889999999 6888887776322 223478999
Q ss_pred cCCCEEEEEEC--CCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCC-Cce-EEE---E
Q 007411 367 NDGTKFLTASY--DKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT-KEI-TQE---Y 439 (604)
Q Consensus 367 pdg~~L~s~s~--Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s-~~~-~~~---~ 439 (604)
|||++|++... +..|.+.|+.+++.+..+..+.......... .. +.+-+.||......+.+ ++. ... +
T Consensus 114 ~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e---~~--~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf 188 (352)
T TIGR02658 114 PDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTAN---DT--FFMHCRDGSLAKVGYGTKGNPKIKPTEVF 188 (352)
T ss_pred CCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecC---Cc--cEEEeecCceEEEEecCCCceEEeeeeee
Confidence 99999998763 6899999999999999998766444444322 21 33444566555544432 221 111 1
Q ss_pred cCcCCce-eEEEEeC-CCCEEEEEeCCCcEEEEECCCC-----eEEEEeecC------CCCcccEEEEcCCCCEEEEEE-
Q 007411 440 DQHLGAV-NTITFVD-SNRRFVTSSDDKSLRVWEFGIP-----VVIKYISEP------HMHSMPSISLHPNTNWLAAQS- 505 (604)
Q Consensus 440 ~~h~~~V-~~i~~sp-~~~~l~sgs~Dg~I~iwdl~~~-----~~~~~~~~~------~~~~v~~l~~sp~g~~l~s~s- 505 (604)
..-..++ ..-.+.+ +++++.++.. |+|.+.|+... ..+..+... ....+.-++++|+++.+++..
T Consensus 189 ~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~ 267 (352)
T TIGR02658 189 HPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLAD 267 (352)
T ss_pred cCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEec
Confidence 1100000 0003455 7777777766 99999996443 222222111 122344599999999888853
Q ss_pred ---------cCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCC-EEEEEc-CCCcEEEEeCCCCeeEEEE
Q 007411 506 ---------LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR-FVMSGD-GEGKCWFWDWKSCKVFRTL 571 (604)
Q Consensus 506 ---------~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~-~L~sgs-~dG~I~iwd~~t~~~~~~l 571 (604)
..+.|.++|..+...+..+.. ...+..++++|||+ +|++.. .++.|.++|..+++.+.++
T Consensus 268 ~~~~~thk~~~~~V~ViD~~t~kvi~~i~v------G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 268 QRAKWTHKTASRFLFVVDAKTGKRLRKIEL------GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCccccccCCCCEEEEEECCCCeEEEEEeC------CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 225799999988877655443 23566799999999 777666 5788999999999999988
No 252
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=1.4e-08 Score=109.28 Aligned_cols=237 Identities=12% Similarity=0.118 Sum_probs=146.3
Q ss_pred cEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEE---EEECC--CcEEEEECCCCcEEEEeeCCCcceEEEEccCCC
Q 007411 337 KVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFL---TASYD--KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDD 411 (604)
Q Consensus 337 ~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~---s~s~D--g~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~ 411 (604)
.|.+.|. .+...+.+......+.+-.|+|||+.++ +...+ ..|.+.++.+++...............|+|++.
T Consensus 166 ~l~~~d~--dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~ 243 (428)
T PRK01029 166 ELWSVDY--DGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKK 243 (428)
T ss_pred eEEEEcC--CCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCC
Confidence 4555565 3444444555666677889999997532 33333 357888998887655444444445567777653
Q ss_pred CCcEEEEEEcCC----eEEEEeCCCC---ceEEEEcCcCCceeEEEEeCCCCEEEEEe-CCCcEEEE--ECCC-CeEEEE
Q 007411 412 KQNILLAGMSDK----KIVQWDMNTK---EITQEYDQHLGAVNTITFVDSNRRFVTSS-DDKSLRVW--EFGI-PVVIKY 480 (604)
Q Consensus 412 ~~~~lvsg~~dg----~I~iwD~~s~---~~~~~~~~h~~~V~~i~~sp~~~~l~sgs-~Dg~I~iw--dl~~-~~~~~~ 480 (604)
.++++...+| .+.+|++..+ ...+....+.+.....+|+|+|+.|+..+ .+|...+| ++.. +.....
T Consensus 244 --~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~ 321 (428)
T PRK01029 244 --LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL 321 (428)
T ss_pred --EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE
Confidence 4555443333 3444777653 33333333334456789999999888766 45655555 4432 222333
Q ss_pred eecCCCCcccEEEEcCCCCEEEEEEcC---CeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcC---C
Q 007411 481 ISEPHMHSMPSISLHPNTNWLAAQSLD---NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG---E 554 (604)
Q Consensus 481 ~~~~~~~~v~~l~~sp~g~~l~s~s~D---g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~---d 554 (604)
+. .....+....|+|+|+.|+..+.+ ..|.+||+.++...... .. ...+....|+|||++|+.... .
T Consensus 322 lt-~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt----~~--~~~~~~p~wSpDG~~L~f~~~~~g~ 394 (428)
T PRK01029 322 LT-KKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT----TS--PENKESPSWAIDSLHLVYSAGNSNE 394 (428)
T ss_pred ec-cCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc----CC--CCCccceEECCCCCEEEEEECCCCC
Confidence 32 233456788999999999887654 46999999776543211 11 123446899999998875432 3
Q ss_pred CcEEEEeCCCCeeEEEEecCCCcEEEEEEec
Q 007411 555 GKCWFWDWKSCKVFRTLKCHEGVCIGCEWHP 585 (604)
Q Consensus 555 G~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp 585 (604)
+.|+++|+.+++...... ..+.+...+|+|
T Consensus 395 ~~L~~vdl~~g~~~~Lt~-~~g~~~~p~Ws~ 424 (428)
T PRK01029 395 SELYLISLITKKTRKIVI-GSGEKRFPSWGA 424 (428)
T ss_pred ceEEEEECCCCCEEEeec-CCCcccCceecC
Confidence 578999998877654443 455677889988
No 253
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.21 E-value=1.1e-08 Score=108.60 Aligned_cols=258 Identities=12% Similarity=0.093 Sum_probs=168.9
Q ss_pred CCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcceEEE
Q 007411 326 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVK 405 (604)
Q Consensus 326 g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~ 405 (604)
+..|++++.+|.|..+|. .+++.+..+.-.......... ++..++.++.++.|..+|..+|+.+.............
T Consensus 65 ~~~v~v~~~~g~v~a~d~-~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p 141 (377)
T TIGR03300 65 GGKVYAADADGTVVALDA-ETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPP 141 (377)
T ss_pred CCEEEEECCCCeEEEEEc-cCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCC
Confidence 568888889999999998 578877766544332222322 56788888999999999999999998876554322111
Q ss_pred EccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCce-----eEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 007411 406 LNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAV-----NTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKY 480 (604)
Q Consensus 406 ~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V-----~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~ 480 (604)
... ...+++++.++.|+.||..+++.+..+......+ .+..+. +..++.++.++.+..+|..++..+-.
T Consensus 142 ~v~----~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~ 215 (377)
T TIGR03300 142 LVA----NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWE 215 (377)
T ss_pred EEE----CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeee
Confidence 111 2457778889999999999999887765433221 111222 24677888889999999988876544
Q ss_pred eecCCCC---c---ccEEEEcC--CCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEc
Q 007411 481 ISEPHMH---S---MPSISLHP--NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD 552 (604)
Q Consensus 481 ~~~~~~~---~---v~~l~~sp--~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs 552 (604)
....... . +..+.-+| .+..+++++.+|.++.||..++....... ... .... ...+..|++++
T Consensus 216 ~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~-~~~------~~~p--~~~~~~vyv~~ 286 (377)
T TIGR03300 216 QRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRD-ASS------YQGP--AVDDNRLYVTD 286 (377)
T ss_pred eccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeec-cCC------ccCc--eEeCCEEEEEC
Confidence 3211110 0 00111111 35678888889999999998876554332 111 1111 12567888889
Q ss_pred CCCcEEEEeCCCCeeEEEEecC-CCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007411 553 GEGKCWFWDWKSCKVFRTLKCH-EGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 553 ~dG~I~iwd~~t~~~~~~l~~h-~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
.+|.|+.+|..+++.+...... .....+... .+..|++++.+|.|.++|
T Consensus 287 ~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i---~g~~l~~~~~~G~l~~~d 336 (377)
T TIGR03300 287 ADGVVVALDRRSGSELWKNDELKYRQLTAPAV---VGGYLVVGDFEGYLHWLS 336 (377)
T ss_pred CCCeEEEEECCCCcEEEccccccCCccccCEE---ECCEEEEEeCCCEEEEEE
Confidence 9999999999999988766322 222222222 234788899999998875
No 254
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.20 E-value=7.2e-10 Score=122.38 Aligned_cols=182 Identities=16% Similarity=0.140 Sum_probs=144.2
Q ss_pred cEEEEEEcCCeEEEEeCCCCceEEEEcCcCCc----eeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcc
Q 007411 414 NILLAGMSDKKIVQWDMNTKEITQEYDQHLGA----VNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSM 489 (604)
Q Consensus 414 ~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~----V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v 489 (604)
..++.++.++.+.+||...+.....+...... ..-+-++++.-++++|+.-+.|.+|+........ ...+|.+.|
T Consensus 100 k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~-~l~GHeG~i 178 (967)
T KOG0974|consen 100 KKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPI-RLKGHEGSI 178 (967)
T ss_pred ceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcc-eecccCCce
Confidence 56888889999999999888777666432221 1222344566689999999999999987333322 334799999
Q ss_pred cEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEE
Q 007411 490 PSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFR 569 (604)
Q Consensus 490 ~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~ 569 (604)
.++.++-+|.++++.|.|.++++|++.+..... ...-+| ...+..++|.|+ .|++++.|.+.++|+. .++.+.
T Consensus 179 F~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--~~~fgH--saRvw~~~~~~n--~i~t~gedctcrvW~~-~~~~l~ 251 (967)
T KOG0974|consen 179 FSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--CTGFGH--SARVWACCFLPN--RIITVGEDCTCRVWGV-NGTQLE 251 (967)
T ss_pred EEEEEccCCcEEEEEecCcceeeeecccccccC--cccccc--cceeEEEEeccc--eeEEeccceEEEEEec-ccceeh
Confidence 999999999999999999999999998876553 233455 577888999998 9999999999999975 455566
Q ss_pred EEecCCC-cEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007411 570 TLKCHEG-VCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 570 ~l~~h~~-~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
.+..|.+ .|..++..+ +...++|++.||.|++||
T Consensus 252 ~y~~h~g~~iw~~~~~~-~~~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 252 VYDEHSGKGIWKIAVPI-GVIIKVTGGNDSTLKLWD 286 (967)
T ss_pred hhhhhhhcceeEEEEcC-CceEEEeeccCcchhhhh
Confidence 8888865 789999988 788999999999999996
No 255
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.19 E-value=6.3e-09 Score=100.19 Aligned_cols=259 Identities=22% Similarity=0.320 Sum_probs=171.3
Q ss_pred CCCcEEEEecCCCCeeeE--Ee-cCCCCceeeEEEcc---CCC-EEEEEECCCcEEEEECCCCcEEEEeeCC---Cc---
Q 007411 334 MDTKVKIWDVVNSGKCMR--TY-MGHSKAVRDISFCN---DGT-KFLTASYDKNIKYWDTETGQVIRTFSTG---KI--- 400 (604)
Q Consensus 334 ~Dg~I~IWd~~~~~~~~~--~~-~~h~~~V~~l~fsp---dg~-~L~s~s~Dg~I~vWD~~t~~~i~~~~~~---~~--- 400 (604)
.-|.+.++++. +.+... ++ ..-...+..+.|.. +|. .++-+..+|.|.++..........+..- ..
T Consensus 44 R~Gkl~Lys~~-d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~ 122 (339)
T KOG0280|consen 44 RSGKLHLYSLE-DMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVV 122 (339)
T ss_pred eccceEEEeec-ccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhe
Confidence 34778889883 332221 22 12345677888875 455 5666777899999987655443333221 11
Q ss_pred -ceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCc--eEEEEcCcCCceeEEEEeCC-CCEEEEEeCCCcEEEEECCCCe
Q 007411 401 -PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE--ITQEYDQHLGAVNTITFVDS-NRRFVTSSDDKSLRVWEFGIPV 476 (604)
Q Consensus 401 -~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~--~~~~~~~h~~~V~~i~~sp~-~~~l~sgs~Dg~I~iwdl~~~~ 476 (604)
..++.+.+.+ .-++++..+|.+.+-+..... .++..+.|.-++....|+.. .+.+.+|++|+.+..||++.+.
T Consensus 123 ~~lslD~~~~~---~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~ 199 (339)
T KOG0280|consen 123 EALSLDISTSG---TKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK 199 (339)
T ss_pred eeeEEEeeccC---ceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc
Confidence 2233444433 448899999999966665553 34578899999999999854 4588899999999999999554
Q ss_pred -EEEEeecCCCCcccEEEEcC-CCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCC--CEEEEEc
Q 007411 477 -VIKYISEPHMHSMPSISLHP-NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDG--RFVMSGD 552 (604)
Q Consensus 477 -~~~~~~~~~~~~v~~l~~sp-~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg--~~L~sgs 552 (604)
.+..-...|...|.+|.-+| .+.+|++|+.|..|++||.++-.+. .+.+. ..+.|..+..+|.- .+|+++-
T Consensus 200 ~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kP----l~~~~-v~GGVWRi~~~p~~~~~lL~~CM 274 (339)
T KOG0280|consen 200 TFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKP----LFKAK-VGGGVWRIKHHPEIFHRLLAACM 274 (339)
T ss_pred ceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCc----cccCc-cccceEEEEecchhhhHHHHHHH
Confidence 33332345777888888776 5789999999999999999864322 12222 34778899999953 3344444
Q ss_pred CCCcEEEEeCCC--Ce---eEEEEecCCCcEEEEEEecCCCCEEEEEeC-CCcEE-Ee
Q 007411 553 GEGKCWFWDWKS--CK---VFRTLKCHEGVCIGCEWHPLEQSKVATCGW-DGLIK-YW 603 (604)
Q Consensus 553 ~dG~I~iwd~~t--~~---~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~-DG~I~-vW 603 (604)
.+| .+|-+... .+ .+...+.|.+-+..-.|.. ...+|+||+. |..|+ +|
T Consensus 275 h~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~-~~~~lATCsFYDk~~~~~W 330 (339)
T KOG0280|consen 275 HNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDS-KDSFLATCSFYDKKIRQLW 330 (339)
T ss_pred hcC-ceEEEecccccchheeeeccccccceeecccccc-ccceeeeeeccccceeeee
Confidence 444 55555543 23 4455567888888888965 4568999864 77655 66
No 256
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.19 E-value=1.4e-09 Score=114.97 Aligned_cols=275 Identities=13% Similarity=0.171 Sum_probs=189.2
Q ss_pred CCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCC-------C-------eeeEEecCCCCceeeEEEccCCCEEEEEECC
Q 007411 313 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNS-------G-------KCMRTYMGHSKAVRDISFCNDGTKFLTASYD 378 (604)
Q Consensus 313 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~-------~-------~~~~~~~~h~~~V~~l~fspdg~~L~s~s~D 378 (604)
.....|+.|+.. ..+++.|+.||.+++-.+... + ..-+++.||...|.-+.|+.+.+.|-++..+
T Consensus 14 nvkL~c~~WNke-~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 14 NVKLHCAEWNKE-SGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CceEEEEEEccc-CCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 445789999998 889999999999999987321 1 1235678999999999999999999999999
Q ss_pred CcEEEEECCCCcEEEEeeC---CCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEE-EEcCcCCceeEEEEeCC
Q 007411 379 KNIKYWDTETGQVIRTFST---GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQ-EYDQHLGAVNTITFVDS 454 (604)
Q Consensus 379 g~I~vWD~~t~~~i~~~~~---~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~-~~~~h~~~V~~i~~sp~ 454 (604)
|.|.||-+-.|.....+.. ...+..++|..++ ..+.....||.|.+=.+...++.. .++ ......+.|+++
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG---~kIcIvYeDGavIVGsvdGNRIwgKeLk--g~~l~hv~ws~D 167 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDG---TKICIVYEDGAVIVGSVDGNRIWGKELK--GQLLAHVLWSED 167 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCC---cEEEEEEccCCEEEEeeccceecchhcc--hheccceeeccc
Confidence 9999999887765443322 2223344454433 457777788887776655433221 111 223457899999
Q ss_pred CCEEEEEeCCCcEEEEECCCCe-------E---EEEeecCCCCcccEEEEc--------CCCCEEEEEEcCCeEEEEEcC
Q 007411 455 NRRFVTSSDDKSLRVWEFGIPV-------V---IKYISEPHMHSMPSISLH--------PNTNWLAAQSLDNQILIYSTR 516 (604)
Q Consensus 455 ~~~l~sgs~Dg~I~iwdl~~~~-------~---~~~~~~~~~~~v~~l~~s--------p~g~~l~s~s~Dg~I~iwd~~ 516 (604)
.+.++.+-.+|.+.+||....- + ..-+.......|..+.|. |+...|+++..+|.+.|..-.
T Consensus 168 ~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~e 247 (1189)
T KOG2041|consen 168 LEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSE 247 (1189)
T ss_pred HHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhc
Confidence 9999989899999999975321 1 111112233346666664 477889999999999887543
Q ss_pred CceeecccccccCcccccceEEEEEcCCCCEEEEEcCC---------CcEEEEeCCCCeeEEEEecCCCcEEEEEEecCC
Q 007411 517 ERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE---------GKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLE 587 (604)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~d---------G~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~ 587 (604)
+......+. . .-.+..+.|+++|.+|++++.+ +.|+++. .-|+.+.+++.....|++++|-. .
T Consensus 248 ND~~Pvv~d--t----gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg-~ 319 (1189)
T KOG2041|consen 248 NDPEPVVVD--T----GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEG-T 319 (1189)
T ss_pred CCCCCeEEe--c----ccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcC-C
Confidence 322111111 1 2456678999999999988753 2566665 67899999999999999999976 4
Q ss_pred CCEEEEEeCCCcEEE
Q 007411 588 QSKVATCGWDGLIKY 602 (604)
Q Consensus 588 ~~~l~tgg~DG~I~v 602 (604)
+-.++ -..|+.|.+
T Consensus 320 gLriA-~Avdsfiyf 333 (1189)
T KOG2041|consen 320 GLRIA-IAVDSFIYF 333 (1189)
T ss_pred ceEEE-EEecceEEE
Confidence 43343 334666654
No 257
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.17 E-value=4.7e-08 Score=115.52 Aligned_cols=245 Identities=10% Similarity=0.151 Sum_probs=164.1
Q ss_pred EEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecC-C-------------CCceeeEEEccCCCEEEEEEC-CCcE
Q 007411 317 SAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMG-H-------------SKAVRDISFCNDGTKFLTASY-DKNI 381 (604)
Q Consensus 317 ~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~-h-------------~~~V~~l~fspdg~~L~s~s~-Dg~I 381 (604)
..+++++.++.++++-+.++.|++||. .+..+..+.+ . -.....|+++++++.|+++.. .+.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~--~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDL--DGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeC--CCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence 467888765778888888999999997 3444444432 1 123578999998887666654 5779
Q ss_pred EEEECCCCcEEEEeeC------------------CCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcC--
Q 007411 382 KYWDTETGQVIRTFST------------------GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ-- 441 (604)
Q Consensus 382 ~vWD~~t~~~i~~~~~------------------~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~-- 441 (604)
+++|+.++... ++.. -..+..+++.+. ++.++++...++.|++||..++... .+.+
T Consensus 649 r~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~--~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G 724 (1057)
T PLN02919 649 REIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPV--NEKVYIAMAGQHQIWEYNISDGVTR-VFSGDG 724 (1057)
T ss_pred EEEecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecC--CCeEEEEECCCCeEEEEECCCCeEE-EEecCC
Confidence 99998876543 2211 123455666653 3467788888999999999877543 2211
Q ss_pred -------------cCCceeEEEEeCCCC-EEEEEeCCCcEEEEECCCCeEEEEee-c-------------------CCCC
Q 007411 442 -------------HLGAVNTITFVDSNR-RFVTSSDDKSLRVWEFGIPVVIKYIS-E-------------------PHMH 487 (604)
Q Consensus 442 -------------h~~~V~~i~~sp~~~-~l~sgs~Dg~I~iwdl~~~~~~~~~~-~-------------------~~~~ 487 (604)
.....+.|+++|++. ++++-+.++.|++||+.++....... . ....
T Consensus 725 ~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~ 804 (1057)
T PLN02919 725 YERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQ 804 (1057)
T ss_pred ccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhcc
Confidence 112356799999988 55566677999999998654321110 0 0111
Q ss_pred cccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccc-c----Cc---ccccceEEEEEcCCCCEEEEEcCCCcEEE
Q 007411 488 SMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRF-A----GH---IVAGYACQVNFSPDGRFVMSGDGEGKCWF 559 (604)
Q Consensus 488 ~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~-~----~~---~~~~~v~~l~~spdg~~L~sgs~dG~I~i 559 (604)
....++++++|.++++-+.++.|++||..++........- . +. ..-.....++++++|+++++-+.++.|++
T Consensus 805 ~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irv 884 (1057)
T PLN02919 805 HPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRY 884 (1057)
T ss_pred CCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEE
Confidence 3468899999998888889999999998775433211100 0 00 00123567999999999888889999999
Q ss_pred EeCCCCee
Q 007411 560 WDWKSCKV 567 (604)
Q Consensus 560 wd~~t~~~ 567 (604)
||+.+++.
T Consensus 885 id~~~~~~ 892 (1057)
T PLN02919 885 LDLNKGEA 892 (1057)
T ss_pred EECCCCcc
Confidence 99988765
No 258
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.16 E-value=6.9e-09 Score=108.60 Aligned_cols=209 Identities=18% Similarity=0.225 Sum_probs=157.1
Q ss_pred cCCCEEEEEECCCcEEEEECCCCcEEEEeeCC----CcceEEEEcc--C---------------CCCCcEEEEEEcCCeE
Q 007411 367 NDGTKFLTASYDKNIKYWDTETGQVIRTFSTG----KIPYVVKLNP--D---------------DDKQNILLAGMSDKKI 425 (604)
Q Consensus 367 pdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~----~~~~~~~~~~--~---------------~~~~~~lvsg~~dg~I 425 (604)
|...+|+....||.++||++..++....|... ....+..|.- . ..+...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 45678999999999999999999887776432 2222222211 1 1134578889999999
Q ss_pred EEEeCCCCceEEEEc--CcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEE
Q 007411 426 VQWDMNTKEITQEYD--QHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAA 503 (604)
Q Consensus 426 ~iwD~~s~~~~~~~~--~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s 503 (604)
.+|++..+++...+. .|.+.|+++.++.+-..|.+++.|+.+..|+....+.++... .....+.+++++||++.+++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~-~~~~~~~sl~is~D~~~l~~ 161 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWK-EQKPLVSSLCISPDGKILLT 161 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeec-cCCCccceEEEcCCCCEEEe
Confidence 999999999888775 699999999999999999999999999999998888777664 46677899999999999998
Q ss_pred EEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCC-----CCEEEEEc-CCCcEEEEeCCC----CeeEEEEec
Q 007411 504 QSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPD-----GRFVMSGD-GEGKCWFWDWKS----CKVFRTLKC 573 (604)
Q Consensus 504 ~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spd-----g~~L~sgs-~dG~I~iwd~~t----~~~~~~l~~ 573 (604)
++ ++|.+|++.++..+ ..|.|| .+.|.++.|.-+ |.+++++. .+..+.+|-+.. ....+.+..
T Consensus 162 as--~~ik~~~~~~kevv---~~ftgh--~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~kkks~~~sl~~ 234 (541)
T KOG4547|consen 162 AS--RQIKVLDIETKEVV---ITFTGH--GSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDKKKSLSCSLTV 234 (541)
T ss_pred cc--ceEEEEEccCceEE---EEecCC--CcceEEEEEEEeccccccceeeeccccccceeEEEEEcccccchhheeecc
Confidence 76 78999999987655 567888 678888888776 77776654 455677775533 333445554
Q ss_pred CCCcEEEEEE
Q 007411 574 HEGVCIGCEW 583 (604)
Q Consensus 574 h~~~V~~v~~ 583 (604)
.+-+|..=.+
T Consensus 235 ~dipv~~ds~ 244 (541)
T KOG4547|consen 235 PDIPVTSDSG 244 (541)
T ss_pred CCCCeEeccc
Confidence 4444443333
No 259
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.16 E-value=9.8e-09 Score=110.42 Aligned_cols=201 Identities=15% Similarity=0.164 Sum_probs=133.6
Q ss_pred EEecCCCCCeEEEEEcCCCCCEEEEEECC---CcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEE-EECCC--c
Q 007411 307 HTWSGHTKGVSAIRFFPKYGHLILSAGMD---TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLT-ASYDK--N 380 (604)
Q Consensus 307 ~tl~gH~~~V~~l~fsp~~g~~L~sgs~D---g~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s-~s~Dg--~ 380 (604)
+.+..+...+.+.+|+|+ +++|+.++.+ ..|++|++ .+++.. .+..+...+.+++|+|+|+.|+. .+.++ .
T Consensus 183 ~~l~~~~~~~~~p~~Spd-g~~la~~~~~~~~~~i~v~d~-~~g~~~-~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~ 259 (417)
T TIGR02800 183 QTITRSREPILSPAWSPD-GQKLAYVSFESGKPEIYVQDL-ATGQRE-KVASFPGMNGAPAFSPDGSKLAVSLSKDGNPD 259 (417)
T ss_pred EEeecCCCceecccCCCC-CCEEEEEEcCCCCcEEEEEEC-CCCCEE-EeecCCCCccceEECCCCCEEEEEECCCCCcc
Confidence 445567778999999999 7777776543 47999999 444332 33445566778999999987764 44444 5
Q ss_pred EEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCC--eEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEE
Q 007411 381 IKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK--KIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRF 458 (604)
Q Consensus 381 I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg--~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l 458 (604)
|.+||+.++................|.+++ ..++++....+ .|+++|+.+++.. .+..+...+..+.|+|++++|
T Consensus 260 i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg--~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~i 336 (417)
T TIGR02800 260 IYVMDLDGKQLTRLTNGPGIDTEPSWSPDG--KSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDLI 336 (417)
T ss_pred EEEEECCCCCEEECCCCCCCCCCEEECCCC--CEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCEE
Confidence 889999887654443333223344566543 23444443333 6888898877643 344455667788999999999
Q ss_pred EEEeCCC---cEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCC---eEEEEEcC
Q 007411 459 VTSSDDK---SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN---QILIYSTR 516 (604)
Q Consensus 459 ~sgs~Dg---~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg---~I~iwd~~ 516 (604)
+.++.++ .|.+||+.++.. ..+.. ........|+|++++|+..+.++ .+.+++..
T Consensus 337 ~~~~~~~~~~~i~~~d~~~~~~-~~l~~--~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 337 AFVHREGGGFNIAVMDLDGGGE-RVLTD--TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred EEEEccCCceEEEEEeCCCCCe-EEccC--CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence 9888776 789999887543 22322 12345568999999988887764 34444443
No 260
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=6.3e-09 Score=108.13 Aligned_cols=250 Identities=10% Similarity=0.187 Sum_probs=161.8
Q ss_pred EEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCC--CEEEE-----EECCCcEEEEECCCC
Q 007411 317 SAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDG--TKFLT-----ASYDKNIKYWDTETG 389 (604)
Q Consensus 317 ~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg--~~L~s-----~s~Dg~I~vWD~~t~ 389 (604)
.++.|+++ .. |+.=-..+.+++|++.+.......+ |...|+.+.+||.+ ..+++ .+.-+.|+||.....
T Consensus 129 W~~qfs~d-Es-l~arlv~nev~f~~~~~f~~~~~kl--~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~ 204 (566)
T KOG2315|consen 129 WVPQFSID-ES-LAARLVSNEVQFYDLGSFKTIQHKL--SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEE 204 (566)
T ss_pred cccccccc-hh-hhhhhhcceEEEEecCCccceeeee--eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccc
Confidence 57788887 33 3333335679999985433333333 67889999999963 23332 245578999987633
Q ss_pred cEEEEeeC----CCcceEEEEccCCCCCcEEEEEEc-----------CCeEEEEeCCCCceEEEEcCcCCceeEEEEeCC
Q 007411 390 QVIRTFST----GKIPYVVKLNPDDDKQNILLAGMS-----------DKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS 454 (604)
Q Consensus 390 ~~i~~~~~----~~~~~~~~~~~~~~~~~~lvsg~~-----------dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~ 454 (604)
.....+.. ......+.|+..+. .+|+.++. ...++++++........+ ...++|.+++|+++
T Consensus 205 ~~~~~~a~ksFFkadkvqm~WN~~gt--~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s 281 (566)
T KOG2315|consen 205 GQHQPVANKSFFKADKVQMKWNKLGT--ALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL-LKEGPVHDVTWSPS 281 (566)
T ss_pred cccchhhhccccccceeEEEeccCCc--eEEEEEEEeecCCCccccccceEEEEEecCceEEEec-CCCCCceEEEECCC
Confidence 22211111 11223344444332 34444332 347888888833333333 35899999999999
Q ss_pred CCEEEEE--eCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcC---CeEEEEEcCCceeecccccccC
Q 007411 455 NRRFVTS--SDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD---NQILIYSTRERFQLNKKKRFAG 529 (604)
Q Consensus 455 ~~~l~sg--s~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~D---g~I~iwd~~~~~~~~~~~~~~~ 529 (604)
++.|+++ -.-..+.|||++... +..+ ..++-.++-|+|.|++|+.++.+ |.|-|||+.+...+.....
T Consensus 282 ~~EF~VvyGfMPAkvtifnlr~~~-v~df---~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a--- 354 (566)
T KOG2315|consen 282 GREFAVVYGFMPAKVTIFNLRGKP-VFDF---PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA--- 354 (566)
T ss_pred CCEEEEEEecccceEEEEcCCCCE-eEeC---CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcccccc---
Confidence 9887664 456789999987543 3333 45677889999999999998866 8899999988655533322
Q ss_pred cccccceEEEEEcCCCCEEEEEcC------CCcEEEEeCCCCeeEEEEecCCCcEEEEEEecC
Q 007411 530 HIVAGYACQVNFSPDGRFVMSGDG------EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPL 586 (604)
Q Consensus 530 ~~~~~~v~~l~~spdg~~L~sgs~------dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~ 586 (604)
...+-+.|+|||++|+++.. |+.++||++ +|.++....-.. ....+.|-|.
T Consensus 355 ----~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~~~~f~s-EL~qv~W~P~ 411 (566)
T KOG2315|consen 355 ----ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLLHEKMFKS-ELLQVEWRPF 411 (566)
T ss_pred ----CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCceeehhhhhH-hHhheeeeec
Confidence 23345899999999998875 677999995 555554333222 4677888763
No 261
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.15 E-value=9.5e-09 Score=110.02 Aligned_cols=212 Identities=14% Similarity=0.203 Sum_probs=152.8
Q ss_pred cCcceeEEecCCCCCeEEEEEcCCC-----------CCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEcc--
Q 007411 301 IPKRLVHTWSGHTKGVSAIRFFPKY-----------GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCN-- 367 (604)
Q Consensus 301 ~p~~~i~tl~gH~~~V~~l~fsp~~-----------g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fsp-- 367 (604)
..-+.++++.-|...|+.++|.|.. .-+||++...|.|.|||. ..+..+..+..|..+|.+++|-+
T Consensus 43 ~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~-~~~s~~~~l~~~~~~~qdl~W~~~r 121 (1062)
T KOG1912|consen 43 RSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDF-VLASVINWLSHSNDSVQDLCWVPAR 121 (1062)
T ss_pred hhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEe-hhhhhhhhhcCCCcchhheeeeecc
Confidence 3457788899999999999998841 236788888999999999 57777777888999999999987
Q ss_pred -CC-CEEEEEECCCcEEEEECCCCcEEEEeeCCCcce-EEEEccCCCCCcEEEEEEcCCeEEEEeCC-------CCceEE
Q 007411 368 -DG-TKFLTASYDKNIKYWDTETGQVIRTFSTGKIPY-VVKLNPDDDKQNILLAGMSDKKIVQWDMN-------TKEITQ 437 (604)
Q Consensus 368 -dg-~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~-~~~~~~~~~~~~~lvsg~~dg~I~iwD~~-------s~~~~~ 437 (604)
+. ..|+.-....+|.+|+..+|+.+......+.+. |+.+.|.+. ..+..-+..|.|.+.+.- .++..+
T Consensus 122 d~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~--rh~~~l~s~g~vl~~~~l~~sep~~pgk~~q 199 (1062)
T KOG1912|consen 122 DDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDS--RHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQ 199 (1062)
T ss_pred CcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCc--ceEEEEccCceEEEEeccCCCCCCCCceeEE
Confidence 33 456666667899999999999999887766554 477777654 445555566777666542 123333
Q ss_pred EEcCcCC----------------c---------eeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEE
Q 007411 438 EYDQHLG----------------A---------VNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSI 492 (604)
Q Consensus 438 ~~~~h~~----------------~---------V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l 492 (604)
.-..|.. . ...++|+|.-+.++.......+.++|++-..++..+.. ..+.+.-+
T Consensus 200 I~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpi-er~~akfv 278 (1062)
T KOG1912|consen 200 ITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPI-ERGGAKFV 278 (1062)
T ss_pred EecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEe-ccCCccee
Confidence 3323322 0 11245677766666666778899999988888777754 44556666
Q ss_pred EEcCCC--CEEEEEEcCCeEEEEEcC
Q 007411 493 SLHPNT--NWLAAQSLDNQILIYSTR 516 (604)
Q Consensus 493 ~~sp~g--~~l~s~s~Dg~I~iwd~~ 516 (604)
.+-|++ ..|++...||.+.+|-.+
T Consensus 279 ~vlP~~~rd~LfclH~nG~ltirvrk 304 (1062)
T KOG1912|consen 279 DVLPDPRRDALFCLHSNGRLTIRVRK 304 (1062)
T ss_pred EeccCCCcceEEEEecCCeEEEEEee
Confidence 776664 578999999999998654
No 262
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.12 E-value=1.6e-08 Score=105.97 Aligned_cols=191 Identities=14% Similarity=0.203 Sum_probs=146.7
Q ss_pred CCCCCEEEEEECCCcEEEEecCCCCeeeEEecC---CCCceeeEEEc--------------------cCCCEEEEEECCC
Q 007411 323 PKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMG---HSKAVRDISFC--------------------NDGTKFLTASYDK 379 (604)
Q Consensus 323 p~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~---h~~~V~~l~fs--------------------pdg~~L~s~s~Dg 379 (604)
|....++|....||.++||+. ..++....|.. -++..++..|. .+...++-|...|
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t-~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g 80 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDT-AKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQG 80 (541)
T ss_pred CchhheEeecCCCCeEEEEEc-cCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCc
Confidence 334789999999999999999 45555444432 23334444442 2344678888899
Q ss_pred cEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEE
Q 007411 380 NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFV 459 (604)
Q Consensus 380 ~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~ 459 (604)
.|.++++..|+....+..+.....+.......+-..|.+++.|+.+..|+......++.+......+.+++++|++..++
T Consensus 81 ~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~ 160 (541)
T KOG4547|consen 81 SVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILL 160 (541)
T ss_pred cEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEE
Confidence 99999999999999998544433333333334457899999999999999999999999999999999999999999999
Q ss_pred EEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCC-----CCEEEEE-EcCCeEEEEEcCC
Q 007411 460 TSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPN-----TNWLAAQ-SLDNQILIYSTRE 517 (604)
Q Consensus 460 sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~-----g~~l~s~-s~Dg~I~iwd~~~ 517 (604)
+++ +.|++||+.+.+.+.++. +|.++|.++.|.-+ |.+++++ ..+..|.+|-+..
T Consensus 161 ~as--~~ik~~~~~~kevv~~ft-gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 161 TAS--RQIKVLDIETKEVVITFT-GHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ecc--ceEEEEEccCceEEEEec-CCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 887 689999999999998886 69999999999876 6666654 3445577776544
No 263
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.12 E-value=2.7e-08 Score=107.50 Aligned_cols=202 Identities=13% Similarity=0.124 Sum_probs=128.9
Q ss_pred EEecCCCCCeEEEEEcCCCCCEEEEEECC---CcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEE-EECCC--c
Q 007411 307 HTWSGHTKGVSAIRFFPKYGHLILSAGMD---TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLT-ASYDK--N 380 (604)
Q Consensus 307 ~tl~gH~~~V~~l~fsp~~g~~L~sgs~D---g~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s-~s~Dg--~ 380 (604)
+.+..|...+...+|+|+ |+.|+..+.+ ..|.+|++ .++... .+....+.+....|+|+|+.|+. .+.+| .
T Consensus 192 ~~l~~~~~~~~~p~wSpD-G~~la~~s~~~~~~~l~~~~l-~~g~~~-~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~ 268 (430)
T PRK00178 192 VTLLQSREPILSPRWSPD-GKRIAYVSFEQKRPRIFVQNL-DTGRRE-QITNFEGLNGAPAWSPDGSKLAFVLSKDGNPE 268 (430)
T ss_pred eEEecCCCceeeeeECCC-CCEEEEEEcCCCCCEEEEEEC-CCCCEE-EccCCCCCcCCeEECCCCCEEEEEEccCCCce
Confidence 345567778999999999 7776655433 36888998 444432 33334445667999999998874 44455 5
Q ss_pred EEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCC--eEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEE
Q 007411 381 IKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK--KIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRF 458 (604)
Q Consensus 381 I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg--~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l 458 (604)
|.+||+.++................|++++ ..++++...++ .|+++|+.+++..... ..........|+|+++.|
T Consensus 269 Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg--~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~~~~~~~~~~Spdg~~i 345 (430)
T PRK00178 269 IYVMDLASRQLSRVTNHPAIDTEPFWGKDG--RTLYFTSDRGGKPQIYKVNVNGGRAERVT-FVGNYNARPRLSADGKTL 345 (430)
T ss_pred EEEEECCCCCeEEcccCCCCcCCeEECCCC--CEEEEEECCCCCceEEEEECCCCCEEEee-cCCCCccceEECCCCCEE
Confidence 888899988765433323333345666644 24555544443 6888888887654332 122334457899999998
Q ss_pred EEEeCC-C--cEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcC---CeEEEEEcCC
Q 007411 459 VTSSDD-K--SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD---NQILIYSTRE 517 (604)
Q Consensus 459 ~sgs~D-g--~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~D---g~I~iwd~~~ 517 (604)
+..+.+ + .|.+||+.++... .+... .......|+|+|++|+..+.+ ..|.++++..
T Consensus 346 ~~~~~~~~~~~l~~~dl~tg~~~-~lt~~--~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 346 VMVHRQDGNFHVAAQDLQRGSVR-ILTDT--SLDESPSVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred EEEEccCCceEEEEEECCCCCEE-EccCC--CCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 877653 3 5888998876543 33222 223356899999999887754 3466666644
No 264
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.12 E-value=5e-08 Score=100.39 Aligned_cols=273 Identities=13% Similarity=0.187 Sum_probs=179.8
Q ss_pred CCeEEEEEcCCCCCEEEEEECCC---------------cEEEEecCCCCeeeEEecCCCCc--ee-eEEEccCCCEEEEE
Q 007411 314 KGVSAIRFFPKYGHLILSAGMDT---------------KVKIWDVVNSGKCMRTYMGHSKA--VR-DISFCNDGTKFLTA 375 (604)
Q Consensus 314 ~~V~~l~fsp~~g~~L~sgs~Dg---------------~I~IWd~~~~~~~~~~~~~h~~~--V~-~l~fspdg~~L~s~ 375 (604)
..|.-+.|+|. +.+|.+-+..+ .+.+||+ .++..+..+.+...+ .. -+.|+-+..+++-.
T Consensus 72 ~~V~~~~fSP~-~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~-~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv 149 (561)
T COG5354 72 PDVKYLDFSPN-EKYLVTWSREPIIEPEIEISPFTSKNNVFVWDI-ASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV 149 (561)
T ss_pred CCceecccCcc-cceeeeeccCCccChhhccCCccccCceeEEec-cCceeEeeccccCCcccccceeeeeecchhhhhh
Confidence 34888999999 99999876544 4899999 788899888877666 55 67888888776644
Q ss_pred ECCCcEEEEECCCCcE-EEEeeCC--CcceEEEEccCCCCCcEEEE-----EEcCCeEEEEeCCCCceEEEEcCcCCcee
Q 007411 376 SYDKNIKYWDTETGQV-IRTFSTG--KIPYVVKLNPDDDKQNILLA-----GMSDKKIVQWDMNTKEITQEYDQHLGAVN 447 (604)
Q Consensus 376 s~Dg~I~vWD~~t~~~-i~~~~~~--~~~~~~~~~~~~~~~~~lvs-----g~~dg~I~iwD~~s~~~~~~~~~h~~~V~ 447 (604)
....+.|+++ ++.. ...+..- .......++|.+++ ..|+. +...+.+++|.+..+..+.+-.-....-.
T Consensus 150 -v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~-~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~ 226 (561)
T COG5354 150 -VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNH-DELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGV 226 (561)
T ss_pred -ccCeEEEEec-CCccccCchhhccccceeeEEecCCCCC-ceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeeccc
Confidence 2357999997 3322 1112111 22333445554322 22332 35678899999987765554333333335
Q ss_pred EEEEeCCCCEEEEEe-----------CCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEE--cCCeEEEEE
Q 007411 448 TITFVDSNRRFVTSS-----------DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS--LDNQILIYS 514 (604)
Q Consensus 448 ~i~~sp~~~~l~sgs-----------~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s--~Dg~I~iwd 514 (604)
.+.|.+.|.+|++-- ....++|+++......... ...++|...+|.|.++.+++.+ .+-.+.++|
T Consensus 227 qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~--~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~ 304 (561)
T COG5354 227 QLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK--DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFD 304 (561)
T ss_pred EEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec--cccccceeeeecccCCceeEEecccccceeecc
Confidence 678888888765421 1356888888743332222 4578999999999988777665 678899999
Q ss_pred cCCceeecccccccCcccccceEEEEEcCCCCEEEEEcC---CCcEEEEeCCCCeeEE-EEecCCCcEEEEEEecCCCCE
Q 007411 515 TRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG---EGKCWFWDWKSCKVFR-TLKCHEGVCIGCEWHPLEQSK 590 (604)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~---dG~I~iwd~~t~~~~~-~l~~h~~~V~~v~~sp~~~~~ 590 (604)
++...... ... ..-..+.|||.+++++.++- .|.|.+||........ .+.+.. ..-|.|+| ++.+
T Consensus 305 lr~Nl~~~---~Pe-----~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wsp-d~qF 373 (561)
T COG5354 305 LRGNLRFY---FPE-----QKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSP-DGQF 373 (561)
T ss_pred cccceEEe---cCC-----cccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC--ceEeeccC-CceE
Confidence 98763221 111 12224789999999998664 5789999987654443 565443 46688999 6666
Q ss_pred EEEEe------CCCcEEEeC
Q 007411 591 VATCG------WDGLIKYWD 604 (604)
Q Consensus 591 l~tgg------~DG~I~vWD 604 (604)
+.+.. .|..|+|||
T Consensus 374 ~~~~~ts~k~~~Dn~i~l~~ 393 (561)
T COG5354 374 YDTDTTSEKLRVDNSIKLWD 393 (561)
T ss_pred EEecCCCcccccCcceEEEE
Confidence 66553 377899996
No 265
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.11 E-value=5e-10 Score=128.74 Aligned_cols=192 Identities=13% Similarity=0.247 Sum_probs=143.5
Q ss_pred ecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEec-CCCCceeeEEEccCCCEEEEEECCCcEEEEECC
Q 007411 309 WSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYM-GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE 387 (604)
Q Consensus 309 l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~-~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~ 387 (604)
++-|-..|.++.=+|. ..+.+||+.||.|++|... .+..+..+. .-...|+.+.|+.+|+.+..+..||.|.+|.+.
T Consensus 2204 ~k~~v~~v~r~~sHp~-~~~Yltgs~dgsv~~~~w~-~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPS-DPYYLTGSQDGSVRMFEWG-HGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred eecccCceeeecCCCC-CceEEecCCCceEEEEecc-CCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC
Confidence 3445667888888888 7899999999999999984 444444333 334889999999999999999999999999987
Q ss_pred CCcEEEEeeCCCc-ceEEEEccCCCCCcEEEEEE---cCCeEEEEeCCCC---ceEEEEcCcCCceeEEEEeCCCCEEEE
Q 007411 388 TGQVIRTFSTGKI-PYVVKLNPDDDKQNILLAGM---SDKKIVQWDMNTK---EITQEYDQHLGAVNTITFVDSNRRFVT 460 (604)
Q Consensus 388 t~~~i~~~~~~~~-~~~~~~~~~~~~~~~lvsg~---~dg~I~iwD~~s~---~~~~~~~~h~~~V~~i~~sp~~~~l~s 460 (604)
.++....+.+.. ..-+.|.. .++++++ .++.+.+||..-. .++. ..|.+.++++++.|..+.|++
T Consensus 2282 -pk~~~s~qchnk~~~Df~Fi~-----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllis 2353 (2439)
T KOG1064|consen 2282 -PKPYTSWQCHNKALSDFRFIG-----SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLIS 2353 (2439)
T ss_pred -CcceeccccCCccccceeeee-----hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEe
Confidence 333333333222 12222222 2344433 4689999997532 2344 689999999999999999999
Q ss_pred EeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceee
Q 007411 461 SSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQL 521 (604)
Q Consensus 461 gs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~ 521 (604)
|+.+|.|++||++..+.++.+.. ++ ...+|++++..|.|+||++.....+
T Consensus 2354 ggr~G~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll 2403 (2439)
T KOG1064|consen 2354 GGRKGEVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFGLL 2403 (2439)
T ss_pred cCCcCcEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccchh
Confidence 99999999999998877666532 44 5678999999999999999775444
No 266
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.10 E-value=3.3e-08 Score=94.13 Aligned_cols=244 Identities=11% Similarity=0.026 Sum_probs=157.0
Q ss_pred CCcEEEEecCCCCeeeEEecCCCCceeeEEEcc-----CCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcc--eEEEEc
Q 007411 335 DTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCN-----DGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP--YVVKLN 407 (604)
Q Consensus 335 Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fsp-----dg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~--~~~~~~ 407 (604)
...|-+|+++...+-+..+. ..+.|-| ...+|+.|+..|...+|...+.+....+-..+.. ..+.-.
T Consensus 51 t~sv~i~~~y~N~~~iv~~y------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~ 124 (344)
T KOG4532|consen 51 TISVPINSHYSNPKGIVEFY------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRY 124 (344)
T ss_pred eeeeEeccccCCchhhEEee------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhh
Confidence 34577888865443332221 3344444 4458899999999999999877654433221111 111111
Q ss_pred cCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCe--EEEEeecCC
Q 007411 408 PDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPV--VIKYISEPH 485 (604)
Q Consensus 408 ~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~--~~~~~~~~~ 485 (604)
. +...-+..++.|.++++.++.-+..........-.++++.++++++++++.++...|..|.+.... ..+....+.
T Consensus 125 c--d~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t 202 (344)
T KOG4532|consen 125 C--DLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPT 202 (344)
T ss_pred c--ccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEeccc
Confidence 1 111336777778888777775443222221111238899999999999999999999999986532 233233345
Q ss_pred CCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCC--EEEEEcCCCcEEEEeCC
Q 007411 486 MHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR--FVMSGDGEGKCWFWDWK 563 (604)
Q Consensus 486 ~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~--~L~sgs~dG~I~iwd~~ 563 (604)
...-.+..|+.....+|+++.||++.|||++..........-......+.+..+.|++.|. +|+..-.-+.+.+.|++
T Consensus 203 ~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R 282 (344)
T KOG4532|consen 203 SDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTR 282 (344)
T ss_pred CCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcc
Confidence 5566788999999999999999999999998754433322222222467888899998664 45666667899999999
Q ss_pred CCeeEEEEec-------CC-CcEEEEEEecC
Q 007411 564 SCKVFRTLKC-------HE-GVCIGCEWHPL 586 (604)
Q Consensus 564 t~~~~~~l~~-------h~-~~V~~v~~sp~ 586 (604)
+++....+.. |. ..|....|+..
T Consensus 283 ~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~ 313 (344)
T KOG4532|consen 283 NYVNHQVIVIPDDVERKHNTQHIFGTNFNNE 313 (344)
T ss_pred cCceeeEEecCccccccccccccccccccCC
Confidence 9876655543 22 23677777763
No 267
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.09 E-value=2.4e-09 Score=104.96 Aligned_cols=246 Identities=15% Similarity=0.269 Sum_probs=176.1
Q ss_pred eeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEEC-CCCcEEEEeeC--CCcceEEEEccCCCCCcEEEEEEcCCe
Q 007411 348 KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDT-ETGQVIRTFST--GKIPYVVKLNPDDDKQNILLAGMSDKK 424 (604)
Q Consensus 348 ~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~-~t~~~i~~~~~--~~~~~~~~~~~~~~~~~~lvsg~~dg~ 424 (604)
..++.+.||...|++...-|...-+++.+.|.+++||-- +.++.-..+.. +....++.+.. +...|++|-.+|.
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~---e~~~L~vg~~ngt 91 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVS---ESRRLYVGQDNGT 91 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeec---cceEEEEEEecce
Confidence 456678899999999999998888999999999999943 34444333332 33344444444 3367999999999
Q ss_pred EEEEeCC----CCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCE
Q 007411 425 IVQWDMN----TKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNW 500 (604)
Q Consensus 425 I~iwD~~----s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~ 500 (604)
+.-+.+. .....+.+..|...|..+-|+-...++++++.|..+.---.+.+..+....... .-+++.+.- .+
T Consensus 92 vtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~--~~t~~~~d~--~~ 167 (404)
T KOG1409|consen 92 VTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFET--PASALQFDA--LY 167 (404)
T ss_pred EEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeec--cCCCCceee--EE
Confidence 9998664 445666778899999999999888999999999877544344333222111000 011111111 15
Q ss_pred EEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCe-eEEEEecCCCcEE
Q 007411 501 LAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCK-VFRTLKCHEGVCI 579 (604)
Q Consensus 501 l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~-~~~~l~~h~~~V~ 579 (604)
..+|...|.|.+..+... .+..+..+.+| ...+.+++|.+..+.|++|..|..+.+||+--.+ ....+.+|...|.
T Consensus 168 ~fvGd~~gqvt~lr~~~~-~~~~i~~~~~h--~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~ 244 (404)
T KOG1409|consen 168 AFVGDHSGQITMLKLEQN-GCQLITTFNGH--TGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQ 244 (404)
T ss_pred EEecccccceEEEEEeec-CCceEEEEcCc--ccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhh
Confidence 556666777777665432 23345567777 4678899999999999999999999999996543 3556788999999
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEeC
Q 007411 580 GCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 580 ~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
.+...+ -...|++++.||.|.+||
T Consensus 245 ~l~~~~-~t~~l~S~~edg~i~~w~ 268 (404)
T KOG1409|consen 245 ALSYAQ-HTRQLISCGEDGGIVVWN 268 (404)
T ss_pred hhhhhh-hheeeeeccCCCeEEEEe
Confidence 888877 677899999999999997
No 268
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.06 E-value=4.7e-08 Score=100.64 Aligned_cols=272 Identities=15% Similarity=0.205 Sum_probs=179.6
Q ss_pred CCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCC------------
Q 007411 312 HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDK------------ 379 (604)
Q Consensus 312 H~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg------------ 379 (604)
-.-++..++|||. |.+|++.... .|.+|.-....++.+.. | ..|..+.|+|.+++|.+-+..+
T Consensus 31 ~~~p~~~~~~SP~-G~~l~~~~~~-~V~~~~g~~~~~l~~~~--~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~ 105 (561)
T COG5354 31 ENWPVAYVSESPL-GTYLFSEHAA-GVECWGGPSKAKLVRFR--H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFT 105 (561)
T ss_pred cCcchhheeecCc-chheehhhcc-ceEEccccchhheeeee--c-CCceecccCcccceeeeeccCCccChhhccCCcc
Confidence 5678999999999 9999887765 48999874444444433 3 4589999999999999876543
Q ss_pred ---cEEEEECCCCcEEEEeeCCCcc---e-EEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceE-EEEcC-cCCceeEEE
Q 007411 380 ---NIKYWDTETGQVIRTFSTGKIP---Y-VVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEIT-QEYDQ-HLGAVNTIT 450 (604)
Q Consensus 380 ---~I~vWD~~t~~~i~~~~~~~~~---~-~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~-~~~~~-h~~~V~~i~ 450 (604)
.+.+||+.+|..+..+.....+ + .+.|..++. +++--....++++++ ++... ..+.. ....|....
T Consensus 106 ~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~----y~ARvv~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFs 180 (561)
T COG5354 106 SKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDK----YVARVVGSSLYIHEI-TDNIEEHPFKNLRPVGILDFS 180 (561)
T ss_pred ccCceeEEeccCceeEeeccccCCcccccceeeeeecch----hhhhhccCeEEEEec-CCccccCchhhccccceeeEE
Confidence 4999999999999998765544 3 566666543 222224567999997 33221 11111 135678888
Q ss_pred EeCCCC--EEEE-----EeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEc-----------CCeEEE
Q 007411 451 FVDSNR--RFVT-----SSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL-----------DNQILI 512 (604)
Q Consensus 451 ~sp~~~--~l~s-----gs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~-----------Dg~I~i 512 (604)
|+|.++ .|+. +..++.+++|.+.....+..... ....-..+.|++.|++|++-.. ...++|
T Consensus 181 isP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~l-fk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl 259 (561)
T COG5354 181 ISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNL-FKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYL 259 (561)
T ss_pred ecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeee-EeecccEEEEecCCceEEEEEEEeeecccceeccceEEE
Confidence 888743 3332 45678999999987666554322 2223356788999988766421 255777
Q ss_pred EEcCCceeecccccccCcccccceEEEEEcCCCCEEEE--EcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCE
Q 007411 513 YSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMS--GDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSK 590 (604)
Q Consensus 513 wd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~s--gs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~ 590 (604)
+++...... ... ...++|...+|.|.++.+++ |-..-.+.++|++.. +.. ....+.=..+.|+| ..++
T Consensus 260 ~~~~e~~i~----V~~--~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~--~~Pe~~rNT~~fsp-~~r~ 329 (561)
T COG5354 260 LRITERSIP----VEK--DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRF--YFPEQKRNTIFFSP-HERY 329 (561)
T ss_pred Eeecccccc----eec--cccccceeeeecccCCceeEEecccccceeecccccc-eEE--ecCCcccccccccC-cccE
Confidence 777632211 111 12467888999998877654 456788999998765 332 23344456677888 6677
Q ss_pred EEEEeCC---CcEEEeC
Q 007411 591 VATCGWD---GLIKYWD 604 (604)
Q Consensus 591 l~tgg~D---G~I~vWD 604 (604)
++.+|.| |.|-+||
T Consensus 330 il~agF~nl~gni~i~~ 346 (561)
T COG5354 330 ILFAGFDNLQGNIEIFD 346 (561)
T ss_pred EEEecCCccccceEEec
Confidence 7777765 4566665
No 269
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.05 E-value=3.8e-08 Score=105.79 Aligned_cols=218 Identities=11% Similarity=0.049 Sum_probs=128.5
Q ss_pred CcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcC--CeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCC
Q 007411 379 KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD--KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNR 456 (604)
Q Consensus 379 g~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~d--g~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~ 456 (604)
..|.+.|...+..............-.|+|++....++++...+ ..|++.++.+++..+.. ...+......|+|+|+
T Consensus 165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt-~~~g~~~~p~wSPDG~ 243 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL-ALQGNQLMPTFSPRKK 243 (428)
T ss_pred ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee-cCCCCccceEECCCCC
Confidence 36777787766554433333344556788876532344454444 46888899887644333 3445556789999999
Q ss_pred EEEEEeC-CC----cEEEEECCCC--eEEEEeecCCCCcccEEEEcCCCCEEEEEE-cCCeEEEE--EcCC-ceeecccc
Q 007411 457 RFVTSSD-DK----SLRVWEFGIP--VVIKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIY--STRE-RFQLNKKK 525 (604)
Q Consensus 457 ~l~sgs~-Dg----~I~iwdl~~~--~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s-~Dg~I~iw--d~~~-~~~~~~~~ 525 (604)
.|+..+. +| .+.+|++..+ .....+...........+|+|+|+.|+..+ .+|...+| ++.. +... .
T Consensus 244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~---~ 320 (428)
T PRK01029 244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSP---R 320 (428)
T ss_pred EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccce---E
Confidence 8887653 22 3444676542 122333322223456789999999888766 45654555 4432 1111 1
Q ss_pred cccCcccccceEEEEEcCCCCEEEEEcCC---CcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEE-EEeCC--Cc
Q 007411 526 RFAGHIVAGYACQVNFSPDGRFVMSGDGE---GKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVA-TCGWD--GL 599 (604)
Q Consensus 526 ~~~~~~~~~~v~~l~~spdg~~L~sgs~d---G~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~-tgg~D--G~ 599 (604)
.+... ...+....|||||+.|+..+.+ ..|++||+.+++... +......+....|+| ++..|+ ++... +.
T Consensus 321 ~lt~~--~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSp-DG~~L~f~~~~~g~~~ 396 (428)
T PRK01029 321 LLTKK--YRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAI-DSLHLVYSAGNSNESE 396 (428)
T ss_pred EeccC--CCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECC-CCCEEEEEECCCCCce
Confidence 11111 1344568999999988865432 469999999887654 333334567899999 455554 44433 34
Q ss_pred EEEeC
Q 007411 600 IKYWD 604 (604)
Q Consensus 600 I~vWD 604 (604)
|.+||
T Consensus 397 L~~vd 401 (428)
T PRK01029 397 LYLIS 401 (428)
T ss_pred EEEEE
Confidence 55543
No 270
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.03 E-value=1.2e-07 Score=110.08 Aligned_cols=274 Identities=11% Similarity=0.119 Sum_probs=175.1
Q ss_pred CCCCCeEEEEEcCCCCCEEEEEECCCcEEEE----ecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEEC
Q 007411 311 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIW----DVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDT 386 (604)
Q Consensus 311 gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IW----d~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~ 386 (604)
.....|.++.|.++ ...|+.+..+|.|.+. +. ....+.....-...|.+++||||+..|+..+.+++|.+..
T Consensus 73 ~~~~~ivs~~yl~d-~~~l~~~~~~Gdi~~~~~~~~~--~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt- 148 (928)
T PF04762_consen 73 DPNDKIVSFQYLAD-SESLCIALASGDIILVREDPDP--DEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMT- 148 (928)
T ss_pred CCCCcEEEEEeccC-CCcEEEEECCceEEEEEccCCC--CCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe-
Confidence 34578999999999 7788888899999999 54 2233333334567899999999999999999999998874
Q ss_pred CCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCce--------------EEEEcCcCCceeEEEEe
Q 007411 387 ETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI--------------TQEYDQHLGAVNTITFV 452 (604)
Q Consensus 387 ~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~--------------~~~~~~h~~~V~~i~~s 452 (604)
.+..++....... ...+....++.+..++=..|.-..|+. ...+. +...-..|+|-
T Consensus 149 ~~fd~i~E~~l~~---------~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWR 218 (928)
T PF04762_consen 149 RDFDPISEVPLDS---------DDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWR 218 (928)
T ss_pred ccceEEEEeecCc---------cccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEEC
Confidence 5555555543321 111111122222211111111111111 01122 34456789999
Q ss_pred CCCCEEEEEeC---C---CcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEc---CCeEEEEEcCCceeecc
Q 007411 453 DSNRRFVTSSD---D---KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL---DNQILIYSTRERFQLNK 523 (604)
Q Consensus 453 p~~~~l~sgs~---D---g~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~---Dg~I~iwd~~~~~~~~~ 523 (604)
.||.+|++.+- . ..|+||+-. +. +....++-.+--.+++|-|+|++||+... ...|.+|.-+. .+-..
T Consensus 219 GDG~yFAVss~~~~~~~~R~iRVy~Re-G~-L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNG-Lrhge 295 (928)
T PF04762_consen 219 GDGEYFAVSSVEPETGSRRVIRVYSRE-GE-LQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNG-LRHGE 295 (928)
T ss_pred CCCcEEEEEEEEcCCCceeEEEEECCC-ce-EEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCC-cEeee
Confidence 99999998874 2 579999854 44 44444455555678999999999998765 35567776433 22111
Q ss_pred cccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCee--EEEEecC-CCcEEEEEEecCCCCEEEEEeCCCcE
Q 007411 524 KKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKV--FRTLKCH-EGVCIGCEWHPLEQSKVATCGWDGLI 600 (604)
Q Consensus 524 ~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~--~~~l~~h-~~~V~~v~~sp~~~~~l~tgg~DG~I 600 (604)
+ .+........+..+.|++|+..|+....|. |.+|-..+..- .+.+... ...+..+.|+|.....|.....+|.+
T Consensus 296 F-~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~ 373 (928)
T PF04762_consen 296 F-TLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQY 373 (928)
T ss_pred E-ecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcE
Confidence 1 111111245678899999999999977665 99999887653 2333322 23455699999777778888776777
Q ss_pred EEe
Q 007411 601 KYW 603 (604)
Q Consensus 601 ~vW 603 (604)
..+
T Consensus 374 ~~~ 376 (928)
T PF04762_consen 374 EIY 376 (928)
T ss_pred EEE
Confidence 654
No 271
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=7e-09 Score=104.96 Aligned_cols=256 Identities=16% Similarity=0.200 Sum_probs=188.5
Q ss_pred CCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCC-CC-eeeEEecCCCCceeeEEEccCCCEEEEEEC-CCcEEEEECCC
Q 007411 312 HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN-SG-KCMRTYMGHSKAVRDISFCNDGTKFLTASY-DKNIKYWDTET 388 (604)
Q Consensus 312 H~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~-~~-~~~~~~~~h~~~V~~l~fspdg~~L~s~s~-Dg~I~vWD~~t 388 (604)
|...|+.+.... .+++.+++.||.++.|.-.. .+ +.+..+..|...|.+++.+-++.++.|.+. |..++++|+++
T Consensus 8 hrd~i~hv~~tk--a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 8 HRDVITHVFPTK--AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred ccceeeeEeeeh--hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 777788776554 58999999999999998633 22 455667789999999999999999999887 99999999998
Q ss_pred CcEEEEeeCCCcceEEEEccCCCCC--cEEEEEEcCCeEEEEeCCCCc--eEEEEcCcCCceeEEEEeCCCCEEEEEeCC
Q 007411 389 GQVIRTFSTGKIPYVVKLNPDDDKQ--NILLAGMSDKKIVQWDMNTKE--ITQEYDQHLGAVNTITFVDSNRRFVTSSDD 464 (604)
Q Consensus 389 ~~~i~~~~~~~~~~~~~~~~~~~~~--~~lvsg~~dg~I~iwD~~s~~--~~~~~~~h~~~V~~i~~sp~~~~l~sgs~D 464 (604)
-..+.-++....+..+.|....... .+.+..-.++.|.++|-...- ....-.-|..+|.++.+++.+..+++....
T Consensus 86 ~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~ 165 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDIS 165 (558)
T ss_pred cchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecccc
Confidence 8887777777777666665543321 233334457999999987553 333335699999999999999999999999
Q ss_pred CcEEEEECCC----CeEEEEe----------ecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeccccc----
Q 007411 465 KSLRVWEFGI----PVVIKYI----------SEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKR---- 526 (604)
Q Consensus 465 g~I~iwdl~~----~~~~~~~----------~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~---- 526 (604)
|.|..|.... +.....+ .........++.++|++..+.+-+.|..|+++...++..+..+..
T Consensus 166 gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~ 245 (558)
T KOG0882|consen 166 GMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTD 245 (558)
T ss_pred ceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchh
Confidence 9999998763 1110000 012345578999999999999999999999999887654322111
Q ss_pred -------------------------ccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEE
Q 007411 527 -------------------------FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTL 571 (604)
Q Consensus 527 -------------------------~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l 571 (604)
+..+ ....-+.+.|...|++|+-|+-=| |++.++.++.+.+.+
T Consensus 246 ~~~q~ks~y~l~~VelgRRmaverelek~-~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 246 AQYQPKSPYGLMHVELGRRMAVERELEKH-GSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRIL 313 (558)
T ss_pred hhhccccccccceeehhhhhhHHhhHhhh-cCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEe
Confidence 0001 122334578999999999988765 889999888877665
No 272
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.03 E-value=2.9e-07 Score=90.72 Aligned_cols=221 Identities=17% Similarity=0.142 Sum_probs=146.0
Q ss_pred CCcEEEEecCCCCeeeEEecCCCCceeeEE--EccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCC
Q 007411 335 DTKVKIWDVVNSGKCMRTYMGHSKAVRDIS--FCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDK 412 (604)
Q Consensus 335 Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~--fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~ 412 (604)
+|+|..||. .+++.+....- ...+.... ..+++..+++++.++.|..||..+|+.+..+.............
T Consensus 2 ~g~l~~~d~-~tG~~~W~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~---- 75 (238)
T PF13360_consen 2 DGTLSALDP-RTGKELWSYDL-GPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVD---- 75 (238)
T ss_dssp TSEEEEEET-TTTEEEEEEEC-SSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEE----
T ss_pred CCEEEEEEC-CCCCEEEEEEC-CCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeec----
Confidence 688999998 68888877743 11233333 33356778888999999999999999999888754433222222
Q ss_pred CcEEEEEEcCCeEEEEeCCCCceEEEE-cCcC---CceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCc
Q 007411 413 QNILLAGMSDKKIVQWDMNTKEITQEY-DQHL---GAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHS 488 (604)
Q Consensus 413 ~~~lvsg~~dg~I~iwD~~s~~~~~~~-~~h~---~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~ 488 (604)
...+++++.++.|+.+|..+|+.+... .... ...........+..++++..++.|..+|+.++..+..........
T Consensus 76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRG 155 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-S
T ss_pred ccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCC
Confidence 145777778899999999999998884 3321 111222233337788888889999999999999877765422111
Q ss_pred ---------ccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEE
Q 007411 489 ---------MPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWF 559 (604)
Q Consensus 489 ---------v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~i 559 (604)
+..-.+..++ .+++++.++.+..+|+.++..+. .....+ +. .....++..|++++.++.|.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w-~~~~~~------~~-~~~~~~~~~l~~~~~~~~l~~ 226 (238)
T PF13360_consen 156 SSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLW-SKPISG------IY-SLPSVDGGTLYVTSSDGRLYA 226 (238)
T ss_dssp S--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEE-EECSS-------EC-ECEECCCTEEEEEETTTEEEE
T ss_pred CcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEE-EecCCC------cc-CCceeeCCEEEEEeCCCEEEE
Confidence 1122222234 77777777764444998887553 111221 11 124567888888889999999
Q ss_pred EeCCCCeeEEE
Q 007411 560 WDWKSCKVFRT 570 (604)
Q Consensus 560 wd~~t~~~~~~ 570 (604)
||+.+|+.+..
T Consensus 227 ~d~~tG~~~W~ 237 (238)
T PF13360_consen 227 LDLKTGKVVWQ 237 (238)
T ss_dssp EETTTTEEEEE
T ss_pred EECCCCCEEeE
Confidence 99999998754
No 273
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.02 E-value=8.2e-08 Score=103.99 Aligned_cols=201 Identities=11% Similarity=0.095 Sum_probs=123.8
Q ss_pred EecCCCCCeEEEEEcCCCCCEEEEEE-CCC--cEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEE-EECCCc--E
Q 007411 308 TWSGHTKGVSAIRFFPKYGHLILSAG-MDT--KVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLT-ASYDKN--I 381 (604)
Q Consensus 308 tl~gH~~~V~~l~fsp~~g~~L~sgs-~Dg--~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s-~s~Dg~--I 381 (604)
.+..+...+.+.+|+|+ |+.|+..+ .++ .|.+||+ .+++.. .+...........|+|||+.|+. .+.++. |
T Consensus 212 ~l~~~~~~~~~p~wSPD-G~~La~~s~~~g~~~L~~~dl-~tg~~~-~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~I 288 (448)
T PRK04792 212 MLLRSPEPLMSPAWSPD-GRKLAYVSFENRKAEIFVQDI-YTQVRE-KVTSFPGINGAPRFSPDGKKLALVLSKDGQPEI 288 (448)
T ss_pred EeecCCCcccCceECCC-CCEEEEEEecCCCcEEEEEEC-CCCCeE-EecCCCCCcCCeeECCCCCEEEEEEeCCCCeEE
Confidence 44556778999999999 66666544 333 5788888 344332 23222334457899999998875 455664 7
Q ss_pred EEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcC--CeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEE
Q 007411 382 KYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD--KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFV 459 (604)
Q Consensus 382 ~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~d--g~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~ 459 (604)
.++|+.+++...............|++++. .++++...+ ..|+++|+.+++..... ..........|+|++++|+
T Consensus 289 y~~dl~tg~~~~lt~~~~~~~~p~wSpDG~--~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~~~~~~~SpDG~~l~ 365 (448)
T PRK04792 289 YVVDIATKALTRITRHRAIDTEPSWHPDGK--SLIFTSERGGKPQIYRVNLASGKVSRLT-FEGEQNLGGSITPDGRSMI 365 (448)
T ss_pred EEEECCCCCeEECccCCCCccceEECCCCC--EEEEEECCCCCceEEEEECCCCCEEEEe-cCCCCCcCeeECCCCCEEE
Confidence 888988877654333333344566776542 455554444 35777888877654332 2223344578999999987
Q ss_pred EEeCC-C--cEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcC-C--eEEEEEcCC
Q 007411 460 TSSDD-K--SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD-N--QILIYSTRE 517 (604)
Q Consensus 460 sgs~D-g--~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~D-g--~I~iwd~~~ 517 (604)
..+.+ + .|.++|+.++... .+... .......|+|+|+.|+..+.+ + .+.+++...
T Consensus 366 ~~~~~~g~~~I~~~dl~~g~~~-~lt~~--~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G 426 (448)
T PRK04792 366 MVNRTNGKFNIARQDLETGAMQ-VLTST--RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG 426 (448)
T ss_pred EEEecCCceEEEEEECCCCCeE-EccCC--CCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 76553 3 4566787776543 23221 122345899999988776654 3 366667643
No 274
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.00 E-value=1.2e-08 Score=100.22 Aligned_cols=200 Identities=18% Similarity=0.345 Sum_probs=138.0
Q ss_pred CCeEEEEEcCCC-CCEEEEEECCCcEEEEecCCCCee----------------------------------eEEe-cCCC
Q 007411 314 KGVSAIRFFPKY-GHLILSAGMDTKVKIWDVVNSGKC----------------------------------MRTY-MGHS 357 (604)
Q Consensus 314 ~~V~~l~fsp~~-g~~L~sgs~Dg~I~IWd~~~~~~~----------------------------------~~~~-~~h~ 357 (604)
..|..|+|.+++ ...++..+.|.+|++|.++..+.. .+.+ .+|.
T Consensus 85 EKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt 164 (433)
T KOG1354|consen 85 EKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHT 164 (433)
T ss_pred hhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccce
Confidence 468999999873 346777788999999998532211 1111 2588
Q ss_pred CceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEE---eeCC------CcceEEEEccCCCCCcEEEEEEcCCeEEEE
Q 007411 358 KAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRT---FSTG------KIPYVVKLNPDDDKQNILLAGMSDKKIVQW 428 (604)
Q Consensus 358 ~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~---~~~~------~~~~~~~~~~~~~~~~~lvsg~~dg~I~iw 428 (604)
-.|++|.++.|+..++++. |=.|-+|+++-...... ++.. ..+....|+|. ..++|+..++.|.|++.
T Consensus 165 yhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~--~cn~f~YSSSKGtIrLc 241 (433)
T KOG1354|consen 165 YHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPH--HCNVFVYSSSKGTIRLC 241 (433)
T ss_pred eEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHh--HccEEEEecCCCcEEEe
Confidence 8899999999999999875 57899999874332211 1111 12334556664 34789999999999999
Q ss_pred eCCCCceEEE----------------EcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCC-CeEEEEeecCCC-----
Q 007411 429 DMNTKEITQE----------------YDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGI-PVVIKYISEPHM----- 486 (604)
Q Consensus 429 D~~s~~~~~~----------------~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~-~~~~~~~~~~~~----- 486 (604)
|+|...+... +..--..|..+.|+++|+++++-+. -+|++||+.. .+++.++.. |.
T Consensus 242 DmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~v-h~~lr~k 319 (433)
T KOG1354|consen 242 DMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPV-HEYLRSK 319 (433)
T ss_pred echhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEee-hHhHHHH
Confidence 9995432111 1112346889999999999988764 6899999943 344444321 11
Q ss_pred -------C---cccEEEEcCCCCEEEEEEcCCeEEEEEcCCc
Q 007411 487 -------H---SMPSISLHPNTNWLAAQSLDNQILIYSTRER 518 (604)
Q Consensus 487 -------~---~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~ 518 (604)
. .-..++|+.++.++++|+..+.+++|++..+
T Consensus 320 Lc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 320 LCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred HHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 1 1245789989999999999999999996544
No 275
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.00 E-value=3.5e-07 Score=97.69 Aligned_cols=260 Identities=9% Similarity=0.085 Sum_probs=165.8
Q ss_pred CCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcceEEE
Q 007411 326 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVK 405 (604)
Q Consensus 326 g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~ 405 (604)
+..++.++.+|.+..+|. .+++.+............... .+..++.++.++.|..+|..+|+.+..+..........
T Consensus 120 ~~~v~v~~~~g~l~ald~-~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~ 196 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNA-EDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLR 196 (394)
T ss_pred CCEEEEEcCCCEEEEEEC-CCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCccccc
Confidence 456777888999999998 678877776543321111122 24567778889999999999999998886542211000
Q ss_pred --EccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCC-------ceeEEEEeC--CCCEEEEEeCCCcEEEEECCC
Q 007411 406 --LNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLG-------AVNTITFVD--SNRRFVTSSDDKSLRVWEFGI 474 (604)
Q Consensus 406 --~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~-------~V~~i~~sp--~~~~l~sgs~Dg~I~iwdl~~ 474 (604)
..|.-. ...+++++.+|.+..+|..+|+.+........ ....+..+| .+..++.++.+|.+..+|..+
T Consensus 197 ~~~sP~v~-~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~t 275 (394)
T PRK11138 197 GESAPATA-FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRS 275 (394)
T ss_pred CCCCCEEE-CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCC
Confidence 011101 13477788899999999999987665431110 000111111 245677777899999999998
Q ss_pred CeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCC
Q 007411 475 PVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE 554 (604)
Q Consensus 475 ~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~d 554 (604)
++.+-..... ....+.. .+..|++++.++.+..+|..++..+.............++ + .+.+|+.++.+
T Consensus 276 G~~~W~~~~~---~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~----v--~~g~l~v~~~~ 344 (394)
T PRK11138 276 GQIVWKREYG---SVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPV----L--YNGYLVVGDSE 344 (394)
T ss_pred CCEEEeecCC---CccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCE----E--ECCEEEEEeCC
Confidence 8766544221 1112222 4667888889999999999887655433222222112221 1 25678889999
Q ss_pred CcEEEEeCCCCeeEEEEecCCCcEEE-EEEecCCCCEEEEEeCCCcEEEe
Q 007411 555 GKCWFWDWKSCKVFRTLKCHEGVCIG-CEWHPLEQSKVATCGWDGLIKYW 603 (604)
Q Consensus 555 G~I~iwd~~t~~~~~~l~~h~~~V~~-v~~sp~~~~~l~tgg~DG~I~vW 603 (604)
|.|++.|..+|+.+...+.....+.+ ..+. + ..|+.++.||.|..+
T Consensus 345 G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~--~-~~l~v~t~~G~l~~~ 391 (394)
T PRK11138 345 GYLHWINREDGRFVAQQKVDSSGFLSEPVVA--D-DKLLIQARDGTVYAI 391 (394)
T ss_pred CEEEEEECCCCCEEEEEEcCCCcceeCCEEE--C-CEEEEEeCCceEEEE
Confidence 99999999999999888754443332 2332 2 378888999998875
No 276
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.00 E-value=2.3e-08 Score=96.85 Aligned_cols=271 Identities=20% Similarity=0.333 Sum_probs=169.2
Q ss_pred CCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCC----eeeEEecCCC------------CceeeEEEccCC--CEEEE
Q 007411 313 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG----KCMRTYMGHS------------KAVRDISFCNDG--TKFLT 374 (604)
Q Consensus 313 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~----~~~~~~~~h~------------~~V~~l~fspdg--~~L~s 374 (604)
...|+++.|... |.+|++|...|.|.+|.-.... +.+..+++|. ..|..|.|..++ ..|+.
T Consensus 26 ad~ItaVefd~t-g~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 26 ADKITAVEFDET-GLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred cceeeEEEeccc-cceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 355899999888 9999999999999999874433 2333456664 347888887754 46778
Q ss_pred EECCCcEEEEECCCCcEEEEe--------eC--CCcce---EEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEE-c
Q 007411 375 ASYDKNIKYWDTETGQVIRTF--------ST--GKIPY---VVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY-D 440 (604)
Q Consensus 375 ~s~Dg~I~vWD~~t~~~i~~~--------~~--~~~~~---~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~-~ 440 (604)
.+.|.+|++|.+......... .. +.+.. .+..-... ....++++. +.+.+ .
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls-~hd~iiaa~--------------p~rvyaN 169 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLS-EHDEIIAAK--------------PCRVYAN 169 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhccccc-ccceEEEec--------------cceeccc
Confidence 889999999998654221111 00 00000 00000000 001122111 11222 4
Q ss_pred CcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeec--CCC-----CcccEEEEcCC-CCEEEEEEcCCeEEE
Q 007411 441 QHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISE--PHM-----HSMPSISLHPN-TNWLAAQSLDNQILI 512 (604)
Q Consensus 441 ~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~--~~~-----~~v~~l~~sp~-g~~l~s~s~Dg~I~i 512 (604)
.|.--|++|.++.+...++++ +|-.|.+|++........+.. ||. .-|++..|+|. ...+.-.+..|.|++
T Consensus 170 aH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl 248 (460)
T COG5170 170 AHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKL 248 (460)
T ss_pred cceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEe
Confidence 688889999999888777766 467899999876543333321 222 34788899996 466777788999999
Q ss_pred EEcCCceee-ccccccc----Cc------ccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC-CeeEEEEecCCC----
Q 007411 513 YSTRERFQL-NKKKRFA----GH------IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS-CKVFRTLKCHEG---- 576 (604)
Q Consensus 513 wd~~~~~~~-~~~~~~~----~~------~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t-~~~~~~l~~h~~---- 576 (604)
-|++..... ...+.+. +. .....|..+.|+++|+||++-+.- +|.|||... ..++.++..|..
T Consensus 249 ~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm~k~pikTi~~h~~l~~~ 327 (460)
T COG5170 249 NDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNMAKNPIKTIPMHCDLMDE 327 (460)
T ss_pred hhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-eEEEEecccccCCceeechHHHHHHH
Confidence 999843221 1111111 00 012457789999999999988754 899999975 456777765532
Q ss_pred --------cE---EEEEEecCCCCEEEEEeCCCcEEE
Q 007411 577 --------VC---IGCEWHPLEQSKVATCGWDGLIKY 602 (604)
Q Consensus 577 --------~V---~~v~~sp~~~~~l~tgg~DG~I~v 602 (604)
.| ..+.|+. +...+.+|+.....-|
T Consensus 328 l~d~YEnDaifdkFeisfSg-d~~~v~sgsy~NNfgi 363 (460)
T COG5170 328 LNDVYENDAIFDKFEISFSG-DDKHVLSGSYSNNFGI 363 (460)
T ss_pred HHhhhhccceeeeEEEEecC-Ccccccccccccceee
Confidence 22 3467777 4556777776655444
No 277
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.99 E-value=3.3e-07 Score=108.49 Aligned_cols=239 Identities=15% Similarity=0.164 Sum_probs=153.9
Q ss_pred eeEEEccC-CCEEEEEECCCcEEEEECCCCcEEEEeeC-C--------------CcceEEEEccCCCCCcEEEEEEcCCe
Q 007411 361 RDISFCND-GTKFLTASYDKNIKYWDTETGQVIRTFST-G--------------KIPYVVKLNPDDDKQNILLAGMSDKK 424 (604)
Q Consensus 361 ~~l~fspd-g~~L~s~s~Dg~I~vWD~~t~~~i~~~~~-~--------------~~~~~~~~~~~~~~~~~lvsg~~dg~ 424 (604)
..+++++. ++.+++-+.++.|++||.. +..+..+.. + ..+..+++.+++ +.++++-..++.
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~g--n~LYVaDt~n~~ 647 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKK--NLLYVADTENHA 647 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCC--CEEEEEeCCCce
Confidence 46788874 5667777778899999986 444444332 1 124455565532 234555556688
Q ss_pred EEEEeCCCCceEEEEcCc-----------------CCceeEEEEeC-CCCEEEEEeCCCcEEEEECCCCeEEEEeec---
Q 007411 425 IVQWDMNTKEITQEYDQH-----------------LGAVNTITFVD-SNRRFVTSSDDKSLRVWEFGIPVVIKYISE--- 483 (604)
Q Consensus 425 I~iwD~~s~~~~~~~~~h-----------------~~~V~~i~~sp-~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~--- 483 (604)
|+++|+.++.. .++.+- ......++++| ++..+++.+.++.|++||...+........
T Consensus 648 Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~ 726 (1057)
T PLN02919 648 LREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYE 726 (1057)
T ss_pred EEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcc
Confidence 99999887653 332110 12235799999 566777778889999999877654322111
Q ss_pred ----------CCCCcccEEEEcCCCCEEE-EEEcCCeEEEEEcCCceeeccc----------ccccCc------ccccce
Q 007411 484 ----------PHMHSMPSISLHPNTNWLA-AQSLDNQILIYSTRERFQLNKK----------KRFAGH------IVAGYA 536 (604)
Q Consensus 484 ----------~~~~~v~~l~~sp~g~~l~-s~s~Dg~I~iwd~~~~~~~~~~----------~~~~~~------~~~~~v 536 (604)
........|+++|+++.|+ +-+.++.|++||+.++...... ..+... ..-...
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P 806 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP 806 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence 0112456799999998554 4456689999998764321000 000000 001123
Q ss_pred EEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEe-------------cCCCcEEEEEEecCCCCEEEEEeCCCcEEEe
Q 007411 537 CQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK-------------CHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 603 (604)
Q Consensus 537 ~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~-------------~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vW 603 (604)
..++++++|.++++-..+++|++||..++....... +.-....++++++ ++.++++-+.+++|++|
T Consensus 807 ~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvi 885 (1057)
T PLN02919 807 LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYL 885 (1057)
T ss_pred ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEE
Confidence 478999999988888899999999998876653321 1112467899999 66788888899999999
Q ss_pred C
Q 007411 604 D 604 (604)
Q Consensus 604 D 604 (604)
|
T Consensus 886 d 886 (1057)
T PLN02919 886 D 886 (1057)
T ss_pred E
Confidence 6
No 278
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.96 E-value=8.4e-07 Score=88.26 Aligned_cols=223 Identities=18% Similarity=0.184 Sum_probs=145.2
Q ss_pred eEEEcc-CCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEc
Q 007411 362 DISFCN-DGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYD 440 (604)
Q Consensus 362 ~l~fsp-dg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~ 440 (604)
+++|.+ ++.++++-...+.|..|+..++.... +.... +..+.+.... ..++++...+ +.++|+.+++......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~-~~G~~~~~~~---g~l~v~~~~~-~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG-PNGMAFDRPD---GRLYVADSGG-IAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS-EEEEEEECTT---SEEEEEETTC-EEEEETTTTEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC-CceEEEEccC---CEEEEEEcCc-eEEEecCCCcEEEEee
Confidence 578888 66666666678999999998876544 33333 4445554222 3455555544 4555999886544443
Q ss_pred C-----cCCceeEEEEeCCCCEEEEEeCC--------CcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEE-EEc
Q 007411 441 Q-----HLGAVNTITFVDSNRRFVTSSDD--------KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAA-QSL 506 (604)
Q Consensus 441 ~-----h~~~V~~i~~sp~~~~l~sgs~D--------g~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s-~s~ 506 (604)
. .....+.+++.++|++.++.... |.|..++.. +....... .......|+|+|+++.|++ -+.
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~--~~~~pNGi~~s~dg~~lyv~ds~ 154 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD--GLGFPNGIAFSPDGKTLYVADSF 154 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE--EESSEEEEEEETTSSEEEEEETT
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec--CcccccceEECCcchheeecccc
Confidence 2 34568899999999987776644 557777776 44333322 3456789999999997764 456
Q ss_pred CCeEEEEEcCCcee-ecccccc-cCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEe
Q 007411 507 DNQILIYSTRERFQ-LNKKKRF-AGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWH 584 (604)
Q Consensus 507 Dg~I~iwd~~~~~~-~~~~~~~-~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~s 584 (604)
.+.|..|++..... +.....+ ......+..-.+++..+|++.++....+.|.+++.. |+.+..+......+++++|.
T Consensus 155 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 155 NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFG 233 (246)
T ss_dssp TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEE
T ss_pred cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEE
Confidence 78899999863222 2211212 111112346679999999988888889999999976 99999888776689999995
Q ss_pred -cCCCCEEEEE
Q 007411 585 -PLEQSKVATC 594 (604)
Q Consensus 585 -p~~~~~l~tg 594 (604)
++...+++|.
T Consensus 234 g~~~~~L~vTt 244 (246)
T PF08450_consen 234 GPDGKTLYVTT 244 (246)
T ss_dssp STTSSEEEEEE
T ss_pred CCCCCEEEEEe
Confidence 4334455543
No 279
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.95 E-value=8e-08 Score=92.72 Aligned_cols=202 Identities=16% Similarity=0.170 Sum_probs=135.1
Q ss_pred CCCCeEEEEEcC--CCCC-EEEEEECCCcEEEEecCCCCeeeEEecCCC---C---ceeeEEEccCCCEEEEEECCCcEE
Q 007411 312 HTKGVSAIRFFP--KYGH-LILSAGMDTKVKIWDVVNSGKCMRTYMGHS---K---AVRDISFCNDGTKFLTASYDKNIK 382 (604)
Q Consensus 312 H~~~V~~l~fsp--~~g~-~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~---~---~V~~l~fspdg~~L~s~s~Dg~I~ 382 (604)
-+..+..+.|.- .++. .|+-+..+|.|.++... .......+.+-+ - ...++.|++.+..++++..+|.+.
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~-~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~ 146 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRND-EDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSIS 146 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEeec-cceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEE
Confidence 445577777763 3355 67777888999999873 333333333221 1 245778899899999999999998
Q ss_pred EEECCCCcEEE--EeeCCC-cceEEEEccCCCCCcEEEEEEcCCeEEEEeCCC-CceEEE-EcCcCCceeEEEEeCC-CC
Q 007411 383 YWDTETGQVIR--TFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT-KEITQE-YDQHLGAVNTITFVDS-NR 456 (604)
Q Consensus 383 vWD~~t~~~i~--~~~~~~-~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s-~~~~~~-~~~h~~~V~~i~~sp~-~~ 456 (604)
+-+........ ..+.+. ..+...|.. .+.+++++|+.|+.+..||+|. ++.+.. .+.|...|.+|.-+|. +.
T Consensus 147 ~v~~t~~~le~vq~wk~He~E~Wta~f~~--~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~ 224 (339)
T KOG0280|consen 147 GVYETEMVLEKVQTWKVHEFEAWTAKFSD--KEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPT 224 (339)
T ss_pred EEecceeeeeecccccccceeeeeeeccc--CCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCc
Confidence 66554443333 333222 223444443 4448999999999999999993 343333 5668899999998864 67
Q ss_pred EEEEEeCCCcEEEEECCC-CeEEEEeecCCCCcccEEEEcCCCC-EEEEEEcCCeEEEEEcCCc
Q 007411 457 RFVTSSDDKSLRVWEFGI-PVVIKYISEPHMHSMPSISLHPNTN-WLAAQSLDNQILIYSTRER 518 (604)
Q Consensus 457 ~l~sgs~Dg~I~iwdl~~-~~~~~~~~~~~~~~v~~l~~sp~g~-~l~s~s~Dg~I~iwd~~~~ 518 (604)
+|++|+.|-.|++||.++ ++++..- ...+.|..+.++|.-. .|+.++.-+-.+|.+....
T Consensus 225 ~I~TGsYDe~i~~~DtRnm~kPl~~~--~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~ 286 (339)
T KOG0280|consen 225 YIATGSYDECIRVLDTRNMGKPLFKA--KVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDK 286 (339)
T ss_pred eEEEeccccceeeeehhcccCccccC--ccccceEEEEecchhhhHHHHHHHhcCceEEEeccc
Confidence 899999999999999984 4554433 3558899999999532 3333344444666666554
No 280
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.95 E-value=7.6e-07 Score=95.30 Aligned_cols=206 Identities=18% Similarity=0.155 Sum_probs=129.6
Q ss_pred ceeeEEEccCCCE-EEEEECC---CcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcC--CeEEEEeCCC
Q 007411 359 AVRDISFCNDGTK-FLTASYD---KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD--KKIVQWDMNT 432 (604)
Q Consensus 359 ~V~~l~fspdg~~-L~s~s~D---g~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~d--g~I~iwD~~s 432 (604)
.+....|+|+|+. ++..+.. ..|.++|+.+++...............|+|++. .++++.+.+ ..|+++|+.+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~--~la~~~~~~g~~~Iy~~dl~~ 266 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGS--KLLLTMAPKGQPDIYLYDTNT 266 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCC--EEEEEEccCCCcEEEEEECCC
Confidence 7788999999985 6654443 468999999887766554444445566777543 455555443 5788899988
Q ss_pred CceEEEEcCcCCceeEEEEeCCCCEEEEEeCC-C--cEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcC--
Q 007411 433 KEITQEYDQHLGAVNTITFVDSNRRFVTSSDD-K--SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD-- 507 (604)
Q Consensus 433 ~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~D-g--~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~D-- 507 (604)
+...+ +..+.+......|+|+|+.|+..+.. + .|.+.|+..+...+....+. ....|+|+|++|+..+..
T Consensus 267 g~~~~-LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~----~~~~~SPDG~~Ia~~~~~~~ 341 (419)
T PRK04043 267 KTLTQ-ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK----NNSSVSTYKNYIVYSSRETN 341 (419)
T ss_pred CcEEE-cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC----cCceECCCCCEEEEEEcCCC
Confidence 86443 43344434566899999988777643 2 68888887766544332211 124899999998887754
Q ss_pred -------CeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCC---CcEEEEeCCCCeeEEEEecCCCc
Q 007411 508 -------NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE---GKCWFWDWKSCKVFRTLKCHEGV 577 (604)
Q Consensus 508 -------g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~d---G~I~iwd~~t~~~~~~l~~h~~~ 577 (604)
..|.+.++.++.... +.. .+ ......|+|||+.|+..... ..|.+.++... ....+....+.
T Consensus 342 ~~~~~~~~~I~v~d~~~g~~~~-LT~-~~-----~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~-~~~~l~~~~g~ 413 (419)
T PRK04043 342 NEFGKNTFNLYLISTNSDYIRR-LTA-NG-----VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN-KSFLFPLKVGK 413 (419)
T ss_pred cccCCCCcEEEEEECCCCCeEE-CCC-CC-----CcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC-eeEEeecCCCc
Confidence 368888887664321 111 11 12247899999988765532 24666676443 33334333344
Q ss_pred EE
Q 007411 578 CI 579 (604)
Q Consensus 578 V~ 579 (604)
+.
T Consensus 414 ~~ 415 (419)
T PRK04043 414 IQ 415 (419)
T ss_pred cC
Confidence 43
No 281
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.95 E-value=4.9e-06 Score=83.11 Aligned_cols=269 Identities=12% Similarity=0.192 Sum_probs=169.1
Q ss_pred CCCCCeEEEEEcCCCCCEEEEEEC---CCcEEEEecCCC-Ceee--EEecCCCCceeeEEEccCCCEEEEEEC-CCcEEE
Q 007411 311 GHTKGVSAIRFFPKYGHLILSAGM---DTKVKIWDVVNS-GKCM--RTYMGHSKAVRDISFCNDGTKFLTASY-DKNIKY 383 (604)
Q Consensus 311 gH~~~V~~l~fsp~~g~~L~sgs~---Dg~I~IWd~~~~-~~~~--~~~~~h~~~V~~l~fspdg~~L~s~s~-Dg~I~v 383 (604)
.+.+.++-|+|+|+ +++|.++.. +|.|..|.+... +++. ........+-..++++++|++|+++.+ .|.|.+
T Consensus 37 ~~~~nptyl~~~~~-~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v 115 (346)
T COG2706 37 AELGNPTYLAVNPD-QRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSV 115 (346)
T ss_pred cccCCCceEEECCC-CCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEE
Confidence 46677899999999 778887754 578888888533 3322 122222334488999999999999987 488999
Q ss_pred EECCC-CcEE---EEeeCCCc----------ceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEc---CcCCce
Q 007411 384 WDTET-GQVI---RTFSTGKI----------PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYD---QHLGAV 446 (604)
Q Consensus 384 WD~~t-~~~i---~~~~~~~~----------~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~---~h~~~V 446 (604)
+-+.. |.+. ..+..... .....+.|++ ..++++.-.--+|.+|++..+.+...-. .....-
T Consensus 116 ~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~--~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GP 193 (346)
T COG2706 116 YPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDG--RYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGP 193 (346)
T ss_pred EEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCC--CEEEEeecCCceEEEEEcccCccccccccccCCCCCc
Confidence 98865 4322 22222111 3344555543 2344444456789999999776543221 244567
Q ss_pred eEEEEeCCCCEEEEEe-CCCcEEEEECCCC-eEEEEee------c--CCCCcccEEEEcCCCCEEEEEEcC-CeEEEEEc
Q 007411 447 NTITFVDSNRRFVTSS-DDKSLRVWEFGIP-VVIKYIS------E--PHMHSMPSISLHPNTNWLAAQSLD-NQILIYST 515 (604)
Q Consensus 447 ~~i~~sp~~~~l~sgs-~Dg~I~iwdl~~~-~~~~~~~------~--~~~~~v~~l~~sp~g~~l~s~s~D-g~I~iwd~ 515 (604)
+.|.|+|++++..+.+ -+++|.+|.+... ..+..+. . ........|.++|+|++|.++... ..|.+|.+
T Consensus 194 RHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V 273 (346)
T COG2706 194 RHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSV 273 (346)
T ss_pred ceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEE
Confidence 8999999999876655 4889999998774 2222221 1 123346678899999999887643 57888877
Q ss_pred CCce-eecccccccCcccccceEEEEEcCCCCEEEEEcCC-CcEEEEeC--CCCeeEEEEe-cCCCcEEEEEEe
Q 007411 516 RERF-QLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE-GKCWFWDW--KSCKVFRTLK-CHEGVCIGCEWH 584 (604)
Q Consensus 516 ~~~~-~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~d-G~I~iwd~--~t~~~~~~l~-~h~~~V~~v~~s 584 (604)
.... .+........+ ......+.|++.|++|+++..+ ..|.+|.+ .+|++-.... .......|+.|.
T Consensus 274 ~~~~g~L~~~~~~~te--g~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 274 DPDGGKLELVGITPTE--GQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred cCCCCEEEEEEEeccC--CcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 5432 22222221111 2235578999999999988765 35777765 4666544333 233344566653
No 282
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.94 E-value=4.5e-06 Score=83.36 Aligned_cols=266 Identities=11% Similarity=0.197 Sum_probs=170.8
Q ss_pred CCcEEEEecCCC-Ce-eeEEecCCCCceeeEEEccCCCEEEEEECC---CcEEEEECCC--CcEE--EEe-eCCCcceEE
Q 007411 335 DTKVKIWDVVNS-GK-CMRTYMGHSKAVRDISFCNDGTKFLTASYD---KNIKYWDTET--GQVI--RTF-STGKIPYVV 404 (604)
Q Consensus 335 Dg~I~IWd~~~~-~~-~~~~~~~h~~~V~~l~fspdg~~L~s~s~D---g~I~vWD~~t--~~~i--~~~-~~~~~~~~~ 404 (604)
+.-|.+|++... ++ ....+-.+...++-|+|+|++++|.++-.+ |.|..|.++. |... ... ..+..+.-+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 467999999522 22 122234567788999999999999988654 7788887764 4432 222 234444556
Q ss_pred EEccCCCCCcEEEEEEcCCeEEEEeCCC-CceEE--EEcCcCCc----------eeEEEEeCCCCEEEEEeC-CCcEEEE
Q 007411 405 KLNPDDDKQNILLAGMSDKKIVQWDMNT-KEITQ--EYDQHLGA----------VNTITFVDSNRRFVTSSD-DKSLRVW 470 (604)
Q Consensus 405 ~~~~~~~~~~~lvsg~~dg~I~iwD~~s-~~~~~--~~~~h~~~----------V~~i~~sp~~~~l~sgs~-Dg~I~iw 470 (604)
++..++ ..++.+....|.|.++-++. |.+.. ....|.+. +.+..+.|++++|++.+- --.|.+|
T Consensus 95 svd~~g--~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y 172 (346)
T COG2706 95 SVDEDG--RFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLY 172 (346)
T ss_pred EECCCC--CEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEE
Confidence 665543 34555556679999999865 43221 12235555 889999999999988753 2358999
Q ss_pred ECCCCeEEEEe--ecCCCCcccEEEEcCCCCEEEEEE-cCCeEEEEEcCCc-eeeccccc---ccC-cccccceEEEEEc
Q 007411 471 EFGIPVVIKYI--SEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRER-FQLNKKKR---FAG-HIVAGYACQVNFS 542 (604)
Q Consensus 471 dl~~~~~~~~~--~~~~~~~v~~l~~sp~g~~l~s~s-~Dg~I~iwd~~~~-~~~~~~~~---~~~-~~~~~~v~~l~~s 542 (604)
++..+.....- ..........|.|||++++..+.+ .+++|.+|..... ..+..++. +.. -........|.++
T Consensus 173 ~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis 252 (346)
T COG2706 173 DLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHIS 252 (346)
T ss_pred EcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEEC
Confidence 99865443221 113455678999999999876655 6899999998763 22222221 111 1112455678999
Q ss_pred CCCCEEEEEcC-CCcEEEEeCC--CCee--EEEEecCCCcEEEEEEecCCCCEEEEEeCCC-cEEEe
Q 007411 543 PDGRFVMSGDG-EGKCWFWDWK--SCKV--FRTLKCHEGVCIGCEWHPLEQSKVATCGWDG-LIKYW 603 (604)
Q Consensus 543 pdg~~L~sgs~-dG~I~iwd~~--t~~~--~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG-~I~vW 603 (604)
+||++|.++.. ...|.+|.+. ++++ +.....+....+...+++ ++++|++++.++ .|.+|
T Consensus 253 ~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf 318 (346)
T COG2706 253 PDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINP-SGRFLIAANQKSDNITVF 318 (346)
T ss_pred CCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCC-CCCEEEEEccCCCcEEEE
Confidence 99999998763 3478888764 3432 222334455568899999 777887777654 45554
No 283
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.93 E-value=1.2e-08 Score=108.66 Aligned_cols=283 Identities=16% Similarity=0.217 Sum_probs=188.5
Q ss_pred CCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCC--CceeeEEEccCC---CEEEEEECCCcEEEEECC
Q 007411 313 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHS--KAVRDISFCNDG---TKFLTASYDKNIKYWDTE 387 (604)
Q Consensus 313 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~--~~V~~l~fspdg---~~L~s~s~Dg~I~vWD~~ 387 (604)
.+++.++..+|. |+-++.++.-|. .+-|+.....+.+-+. |. -.|-++.|++.. ..+++.+ ...-.+|++.
T Consensus 24 ~~~~~a~si~p~-grdi~lAsr~gl-~i~dld~p~~ppr~l~-h~tpw~vad~qws~h~a~~~wiVsts-~qkaiiwnlA 99 (1081)
T KOG0309|consen 24 DGGFNAVSINPS-GRDIVLASRQGL-YIIDLDDPFTPPRWLH-HITPWQVADVQWSPHPAKPYWIVSTS-NQKAIIWNLA 99 (1081)
T ss_pred cCcccceeeccc-cchhhhhhhcCe-EEEeccCCCCCceeee-ccCcchhcceecccCCCCceeEEecC-cchhhhhhhh
Confidence 466888899999 777888887664 4557755555555443 32 347788888843 2344444 4556688875
Q ss_pred C--CcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCC-ceEEEEcCcCCceeEEEEeCCCCEEEEEeCC
Q 007411 388 T--GQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITFVDSNRRFVTSSDD 464 (604)
Q Consensus 388 t--~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~-~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~D 464 (604)
. .+.+.-+..++...+....+.+....++++++.|-.+..||+++. ..+..+..-......+.|+-....+++.+..
T Consensus 100 ~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg 179 (1081)
T KOG0309|consen 100 KSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHG 179 (1081)
T ss_pred cCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccC
Confidence 3 344555555666666666666666689999999999999999986 4555555556667889999777777777888
Q ss_pred CcEEEEECCCCeEEEEeecCCCCcccEEEEcCC-CCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcC
Q 007411 465 KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPN-TNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP 543 (604)
Q Consensus 465 g~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~-g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp 543 (604)
+.|++||++.+.........|...+..+.|..- ...+.+++.|++|++|+............ . ...++..-.+-|
T Consensus 180 ~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~v-t---t~~piw~~r~~P 255 (1081)
T KOG0309|consen 180 NDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTV-T---TNFPIWRGRYLP 255 (1081)
T ss_pred CceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceec-c---ccCcceeccccc
Confidence 899999999876655555557777888877653 45688899999999999765322211110 0 122333444444
Q ss_pred CCC--EEEEEc---------CCCcEEEEeCCC-CeeEEEEecCCCcEEEEEEecCC---------CCEEEEEeCCCcEEE
Q 007411 544 DGR--FVMSGD---------GEGKCWFWDWKS-CKVFRTLKCHEGVCIGCEWHPLE---------QSKVATCGWDGLIKY 602 (604)
Q Consensus 544 dg~--~L~sgs---------~dG~I~iwd~~t-~~~~~~l~~h~~~V~~v~~sp~~---------~~~l~tgg~DG~I~v 602 (604)
-|. ++.-.- .+.....|+..+ .+++++|.+|...|....|-... .-.|+|-+.|..+++
T Consensus 256 fg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrl 335 (1081)
T KOG0309|consen 256 FGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRL 335 (1081)
T ss_pred cCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEe
Confidence 322 222111 122233344443 46799999999999888886532 236999999999999
Q ss_pred e
Q 007411 603 W 603 (604)
Q Consensus 603 W 603 (604)
|
T Consensus 336 W 336 (1081)
T KOG0309|consen 336 W 336 (1081)
T ss_pred e
Confidence 9
No 284
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.90 E-value=2.9e-09 Score=109.72 Aligned_cols=138 Identities=14% Similarity=0.190 Sum_probs=102.3
Q ss_pred ceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeec-CCCCcccEEEEcCC--CCE-EEEEEcCCe
Q 007411 434 EITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISE-PHMHSMPSISLHPN--TNW-LAAQSLDNQ 509 (604)
Q Consensus 434 ~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~-~~~~~v~~l~~sp~--g~~-l~s~s~Dg~ 509 (604)
.+..++..|..+|+++.|..+.++++++ ||.|.+||--.+..+.+... +..+.+..+..-++ ... ++.++...+
T Consensus 775 aCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeST 852 (1034)
T KOG4190|consen 775 ACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAEST 852 (1034)
T ss_pred eeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhh
Confidence 3566788999999999999988888765 78899999766666553332 33344444444443 333 344478899
Q ss_pred EEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEec
Q 007411 510 ILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC 573 (604)
Q Consensus 510 I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~ 573 (604)
|+++|.+...-....+..........+.+++..+.|+.++++-++|.|.+.|.++|+.+..++.
T Consensus 853 VKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrp 916 (1034)
T KOG4190|consen 853 VKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRP 916 (1034)
T ss_pred heeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCc
Confidence 9999998876555555443333356788899999999999999999999999999998876653
No 285
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.90 E-value=1.8e-06 Score=88.25 Aligned_cols=176 Identities=15% Similarity=0.167 Sum_probs=137.7
Q ss_pred EcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCC-cEEEEECCCCcEEEEeeCCC
Q 007411 321 FFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDK-NIKYWDTETGQVIRTFSTGK 399 (604)
Q Consensus 321 fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg-~I~vWD~~t~~~i~~~~~~~ 399 (604)
|++.+|.+++..|. |+..|.+. ..+-.++ .+|...|+-..+..++.-++.|..|| .|-|+|.++++..+....-.
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~-~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg 402 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRP-WDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLG 402 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECC-CCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCcc
Confidence 55666889988886 77777776 3333333 36788899999998888999999999 89999999998877776667
Q ss_pred cceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCC----cEEEEECCCC
Q 007411 400 IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDK----SLRVWEFGIP 475 (604)
Q Consensus 400 ~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg----~I~iwdl~~~ 475 (604)
.+..+...+++ ..++++.....|.++|+.++.....-+...+-|+.+.|+|++++|+-+--+| .|+++|+..+
T Consensus 403 ~I~av~vs~dG---K~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~ 479 (668)
T COG4946 403 NIEAVKVSPDG---KKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG 479 (668)
T ss_pred ceEEEEEcCCC---cEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC
Confidence 77778888765 5788888889999999999987666666778899999999999999776555 6999999887
Q ss_pred eEEEEeecCCCCcccEEEEcCCCCEEEEEE
Q 007411 476 VVIKYISEPHMHSMPSISLHPNTNWLAAQS 505 (604)
Q Consensus 476 ~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s 505 (604)
+....... ...=.+-+|.|++++|..-+
T Consensus 480 Kiy~vTT~--ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 480 KIYDVTTP--TAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred eEEEecCC--cccccCcccCCCCcEEEEEe
Confidence 76655432 22234567889999876654
No 286
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.84 E-value=7.7e-08 Score=96.60 Aligned_cols=160 Identities=14% Similarity=0.150 Sum_probs=117.6
Q ss_pred eeEEEccCCCEEEEEECCCcEEEEECCCC----cEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceE
Q 007411 361 RDISFCNDGTKFLTASYDKNIKYWDTETG----QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEIT 436 (604)
Q Consensus 361 ~~l~fspdg~~L~s~s~Dg~I~vWD~~t~----~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~ 436 (604)
..+..++.+++|+++..+....++++... +.+..+.....+..+.+........+....+....+.+|....+...
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~ 145 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCE 145 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcc
Confidence 34456677778887777777666666443 34445555666666666665543222223333445555555544433
Q ss_pred EEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 007411 437 QEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR 516 (604)
Q Consensus 437 ~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~ 516 (604)
.+-+|...++.++|+||+++|+++..|..|+|-.+.....+..+..+|..-|..+++-++. .|++++.|++|++||+.
T Consensus 146 -~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS~sGD~tlr~Wd~~ 223 (390)
T KOG3914|consen 146 -PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLSGSGDKTLRLWDIT 223 (390)
T ss_pred -hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeeecCCCCcEEEEecc
Confidence 3458999999999999999999999999999999988888888888999999999998654 58999999999999999
Q ss_pred Cceeec
Q 007411 517 ERFQLN 522 (604)
Q Consensus 517 ~~~~~~ 522 (604)
++..+.
T Consensus 224 sgk~L~ 229 (390)
T KOG3914|consen 224 SGKLLD 229 (390)
T ss_pred cCCccc
Confidence 887663
No 287
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=1.5e-07 Score=94.38 Aligned_cols=259 Identities=19% Similarity=0.195 Sum_probs=155.7
Q ss_pred EEEEecCCCCeeeEEecCCCCceeeEEEccCCC-EEEEEECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEE
Q 007411 338 VKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGT-KFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNIL 416 (604)
Q Consensus 338 I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~-~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l 416 (604)
|++.+. .+-+....+.+|...|++++|+|..+ ++..++.+..|+|.|+++..++..+..+..++.++|..++ .+++
T Consensus 175 v~~l~~-~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde--~h~I 251 (463)
T KOG1645|consen 175 VQKLES-HDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDE--RHVI 251 (463)
T ss_pred eEEecc-CCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCC--ccee
Confidence 444444 33344556778899999999999766 7889999999999999999999999999999999998866 4899
Q ss_pred EEEEcCCeEEEEeCCCCc-eEEEEcC--cCCceeEEEEe------CCCCEEEEEeCCCcEEEEECCCC--eEEEEeecCC
Q 007411 417 LAGMSDKKIVQWDMNTKE-ITQEYDQ--HLGAVNTITFV------DSNRRFVTSSDDKSLRVWEFGIP--VVIKYISEPH 485 (604)
Q Consensus 417 vsg~~dg~I~iwD~~s~~-~~~~~~~--h~~~V~~i~~s------p~~~~l~sgs~Dg~I~iwdl~~~--~~~~~~~~~~ 485 (604)
.+|..+|.|.+||++..+ .+..+.+ ...+|..++.. +.+..++..+.+ +..|++... ..........
T Consensus 252 YaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~ 329 (463)
T KOG1645|consen 252 YAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEP 329 (463)
T ss_pred EEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCC
Confidence 999999999999998754 2222221 22344444333 334445444432 556665321 1122222223
Q ss_pred CCcccEEEEcCCCCEEEEEEcC-------CeEEE-EEcCCceeeccccccc-Cccc-ccceE-EEEEcCCCCEEE-EEcC
Q 007411 486 MHSMPSISLHPNTNWLAAQSLD-------NQILI-YSTRERFQLNKKKRFA-GHIV-AGYAC-QVNFSPDGRFVM-SGDG 553 (604)
Q Consensus 486 ~~~v~~l~~sp~g~~l~s~s~D-------g~I~i-wd~~~~~~~~~~~~~~-~~~~-~~~v~-~l~~spdg~~L~-sgs~ 553 (604)
.+...++.+++..+.++..... ..|.. -|..++..+...+... |... ...-. .+.-.++.++|+ .|++
T Consensus 330 pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~ 409 (463)
T KOG1645|consen 330 PGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDS 409 (463)
T ss_pred CcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCC
Confidence 4455566666655555444322 01111 1122232222111110 1100 00000 122234555554 5667
Q ss_pred CCcEEEEeCCCCeeEEEEecCCCcEEEEEEecC-CCCEEEEEeCCCcEEEe
Q 007411 554 EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPL-EQSKVATCGWDGLIKYW 603 (604)
Q Consensus 554 dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~-~~~~l~tgg~DG~I~vW 603 (604)
...+.+||..+++.+.++... .+|.+++.... ++++|++-. |..++||
T Consensus 410 tn~lil~D~~s~evvQ~l~~~-epv~Dicp~~~n~~syLa~LT-d~~v~Iy 458 (463)
T KOG1645|consen 410 TNELILQDPHSFEVVQTLALS-EPVLDICPNDTNGSSYLALLT-DDRVHIY 458 (463)
T ss_pred cceeEEeccchhheeeecccC-cceeecceeecCCcchhhhee-cceEEEE
Confidence 788999999999999998754 77888766543 455676666 4566665
No 288
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.82 E-value=3.1e-08 Score=105.63 Aligned_cols=258 Identities=18% Similarity=0.259 Sum_probs=166.9
Q ss_pred ccCcceeEEecCCCCCeEEEEEcCCC-CCEEEEEECCCcEEEEecCCC--CeeeEEecCCCCceeeEEEccC-CCEEEEE
Q 007411 300 YIPKRLVHTWSGHTKGVSAIRFFPKY-GHLILSAGMDTKVKIWDVVNS--GKCMRTYMGHSKAVRDISFCND-GTKFLTA 375 (604)
Q Consensus 300 ~~p~~~i~tl~gH~~~V~~l~fsp~~-g~~L~sgs~Dg~I~IWd~~~~--~~~~~~~~~h~~~V~~l~fspd-g~~L~s~ 375 (604)
|-|++.++-+..- .|-.+.|+|.. ..+-++......-.||++... ...-..+.+|+.+|+++.|++. ...++++
T Consensus 56 ~~ppr~l~h~tpw--~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatc 133 (1081)
T KOG0309|consen 56 FTPPRWLHHITPW--QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATC 133 (1081)
T ss_pred CCCceeeeccCcc--hhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeec
Confidence 4455555443322 25556676642 234444444556778988432 3444567799999999999994 4688999
Q ss_pred ECCCcEEEEECCCCc-EEEEeeC-CCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCC-ceEEEEcCcCCceeEEEEe
Q 007411 376 SYDKNIKYWDTETGQ-VIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITFV 452 (604)
Q Consensus 376 s~Dg~I~vWD~~t~~-~i~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~-~~~~~~~~h~~~V~~i~~s 452 (604)
+-|-.+..||+++.. .+..+.. ......+.|+.... .+++.+..+.|.+||++.| .++..+++|...|+.+.|.
T Consensus 134 svdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p---~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fn 210 (1081)
T KOG0309|consen 134 SVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDP---NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFN 210 (1081)
T ss_pred cccccceeeeccCCCcceeeeecccccCceeeecccCc---chhhhccCCceEEEeccCCCcceEEecccceeeehHHHh
Confidence 999999999998754 3333332 33445667766443 3666677788999999976 5778889999999999987
Q ss_pred CC-CCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEE--EEcCCeEEEEEcCCce-------eec
Q 007411 453 DS-NRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAA--QSLDNQILIYSTRERF-------QLN 522 (604)
Q Consensus 453 p~-~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s--~s~Dg~I~iwd~~~~~-------~~~ 522 (604)
.- ...+.+++.|++|++||................+|..-++.|-|.-.++ .-.++.+.+++.++.. ...
T Consensus 211 r~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~ 290 (1081)
T KOG0309|consen 211 RFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNT 290 (1081)
T ss_pred hhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCc
Confidence 53 3468899999999999997665443333346667777777776543222 2223345555443321 223
Q ss_pred ccccccCcccccceEEEEEcC----------CCCEEEEEcCCCcEEEEeCCC
Q 007411 523 KKKRFAGHIVAGYACQVNFSP----------DGRFVMSGDGEGKCWFWDWKS 564 (604)
Q Consensus 523 ~~~~~~~~~~~~~v~~l~~sp----------dg~~L~sgs~dG~I~iwd~~t 564 (604)
.+..|.||. ..|...-|-. ..-.|++=+.|..+++|-+.+
T Consensus 291 pVh~F~GH~--D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 291 PVHTFVGHD--DVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred ceeeecCcc--hHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 445667773 3333333322 123588999999999998754
No 289
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.82 E-value=4e-07 Score=97.91 Aligned_cols=244 Identities=18% Similarity=0.148 Sum_probs=170.9
Q ss_pred CCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccC------------CCEEEEEECCC
Q 007411 312 HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCND------------GTKFLTASYDK 379 (604)
Q Consensus 312 H~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspd------------g~~L~s~s~Dg 379 (604)
|...-.++.|+|. .+||-|+. ..|.+-|. .+-+.++.+..|...|+.+.|.|- .-+|+++...|
T Consensus 14 ~~sN~~A~Dw~~~--GLiAygsh-slV~VVDs-~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~G 89 (1062)
T KOG1912|consen 14 SRSNRNAADWSPS--GLIAYGSH-SLVSVVDS-RSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISG 89 (1062)
T ss_pred CcccccccccCcc--ceEEEecC-ceEEEEeh-hhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccC
Confidence 3334678889987 46766665 46788887 577889999999999999999872 12566777789
Q ss_pred cEEEEECCCCcEEEEeeCCC-cceEEEEccCCCCC-cEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeC-CCC
Q 007411 380 NIKYWDTETGQVIRTFSTGK-IPYVVKLNPDDDKQ-NILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVD-SNR 456 (604)
Q Consensus 380 ~I~vWD~~t~~~i~~~~~~~-~~~~~~~~~~~~~~-~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp-~~~ 456 (604)
.|.+||...+..+..+..+. ....++|.+..+.. .++++-.....|.+|+..+|+....+........|+.+.| +.+
T Consensus 90 rIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~r 169 (1062)
T KOG1912|consen 90 RIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSR 169 (1062)
T ss_pred cEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcc
Confidence 99999999988887776543 34566666655544 6788888889999999999999998887777888899988 455
Q ss_pred EEEEEeCCCcEEEEECCC------CeEEEEeecCCCC------------c-------------ccEEEEcCCCCEEEEEE
Q 007411 457 RFVTSSDDKSLRVWEFGI------PVVIKYISEPHMH------------S-------------MPSISLHPNTNWLAAQS 505 (604)
Q Consensus 457 ~l~sgs~Dg~I~iwdl~~------~~~~~~~~~~~~~------------~-------------v~~l~~sp~g~~l~s~s 505 (604)
.|...+..|.+.+-+.-. +....+|..+|.. . ...++|+|.-+.++...
T Consensus 170 h~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~ 249 (1062)
T KOG1912|consen 170 HFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFIT 249 (1062)
T ss_pred eEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEE
Confidence 666666677777776521 1122223222221 0 11256678766666667
Q ss_pred cCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCC--CEEEEEcCCCcEEEEeCCC
Q 007411 506 LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDG--RFVMSGDGEGKCWFWDWKS 564 (604)
Q Consensus 506 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg--~~L~sgs~dG~I~iwd~~t 564 (604)
....+.++|+.-...+.....-. +.+.-+.+-|++ ..|+++-.||.+.||-.+.
T Consensus 250 ~prellv~dle~~~~l~vvpier-----~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 250 FPRELLVFDLEYECCLAVVPIER-----GGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred eccceEEEcchhhceeEEEEecc-----CCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 78889999987655554333322 223335666654 4799999999999997654
No 290
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.81 E-value=2.8e-07 Score=98.13 Aligned_cols=234 Identities=12% Similarity=0.124 Sum_probs=152.6
Q ss_pred eeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEec-CCCCceeeEEEccCCCEEEEEECCCcEEE
Q 007411 305 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYM-GHSKAVRDISFCNDGTKFLTASYDKNIKY 383 (604)
Q Consensus 305 ~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~-~h~~~V~~l~fspdg~~L~s~s~Dg~I~v 383 (604)
.-+++.||++.|.-+.|+.+ .+-|-|+..+|.|.+|-+++..-+-..+. ...+.|.+++|+.+|..+...-.||.|.|
T Consensus 63 mNQtLeGH~~sV~vvTWNe~-~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIV 141 (1189)
T KOG2041|consen 63 MNQTLEGHNASVMVVTWNEN-NQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIV 141 (1189)
T ss_pred hhhhhccCcceEEEEEeccc-cccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEE
Confidence 45789999999999999988 78899999999999999965432222222 24566899999999999999999999988
Q ss_pred EECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCc-------e-E---EEEcCcCCceeEEEEe
Q 007411 384 WDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE-------I-T---QEYDQHLGAVNTITFV 452 (604)
Q Consensus 384 WD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~-------~-~---~~~~~h~~~V~~i~~s 452 (604)
=.++.++.-..--.+....-+.|+++. ..++.+-.+|.+.+||....- + + ..+......|..+.|.
T Consensus 142 GsvdGNRIwgKeLkg~~l~hv~ws~D~---~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~ 218 (1189)
T KOG2041|consen 142 GSVDGNRIWGKELKGQLLAHVLWSEDL---EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWN 218 (1189)
T ss_pred EeeccceecchhcchheccceeecccH---HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeec
Confidence 777654432221112222345555544 457778888999999976431 1 1 1122223346666664
Q ss_pred --------CCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcC---------CeEEEEEc
Q 007411 453 --------DSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD---------NQILIYST 515 (604)
Q Consensus 453 --------p~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~D---------g~I~iwd~ 515 (604)
|+...|+++-..|.+.|..-.+......+. ..-.+..+.|+++|..|++++.+ +.|.+|..
T Consensus 219 ~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d--tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp 296 (1189)
T KOG2041|consen 219 TGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD--TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP 296 (1189)
T ss_pred cCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe--cccEeecceecCCCcEEEEccCcccccCccccceEEEecc
Confidence 577889999999998886544333222332 22568889999999999999865 34555543
Q ss_pred CCceeecccccccCcccccceEEEEEcCCCCEEEE
Q 007411 516 RERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMS 550 (604)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~s 550 (604)
-. ..+. .++- ....|+.++|-..|-.++.
T Consensus 297 ~G-~i~g---tlkv--pg~~It~lsWEg~gLriA~ 325 (1189)
T KOG2041|consen 297 YG-HIVG---TLKV--PGSCITGLSWEGTGLRIAI 325 (1189)
T ss_pred ch-hheE---EEec--CCceeeeeEEcCCceEEEE
Confidence 22 1111 1111 1344666777655544443
No 291
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.81 E-value=3.8e-06 Score=97.80 Aligned_cols=247 Identities=17% Similarity=0.222 Sum_probs=155.0
Q ss_pred CCCCeEEEEEcCCCCCEEEEEECCCcEEEEecC------------CCC--eee--------EEecC--------------
Q 007411 312 HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVV------------NSG--KCM--------RTYMG-------------- 355 (604)
Q Consensus 312 H~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~------------~~~--~~~--------~~~~~-------------- 355 (604)
-..+|.|++|||| +.+|+....+++|.+-+.. .-+ +.+ ..|+|
T Consensus 119 vd~GI~a~~WSPD-~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~ 197 (928)
T PF04762_consen 119 VDSGILAASWSPD-EELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPT 197 (928)
T ss_pred EcCcEEEEEECCC-cCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCC
Confidence 3578999999999 9999999989988876431 000 000 01110
Q ss_pred ----------CCCceeeEEEccCCCEEEEEEC---C---CcEEEEECCCCcEEEEee-CCCcceEEEEccCCCCCcEEEE
Q 007411 356 ----------HSKAVRDISFCNDGTKFLTASY---D---KNIKYWDTETGQVIRTFS-TGKIPYVVKLNPDDDKQNILLA 418 (604)
Q Consensus 356 ----------h~~~V~~l~fspdg~~L~s~s~---D---g~I~vWD~~t~~~i~~~~-~~~~~~~~~~~~~~~~~~~lvs 418 (604)
+...-..|+|-.||.+|++.+. . +.|+||+-+ |....+.. .......++|.|.+ +++++
T Consensus 198 ~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG---~lIA~ 273 (928)
T PF04762_consen 198 VPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSG---NLIAS 273 (928)
T ss_pred CCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCC---CEEEE
Confidence 2234457889999999998875 2 579999866 55443332 23334577888765 55665
Q ss_pred EEc---CCeEEEEeCCC---CceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEE--EEeecCCCCccc
Q 007411 419 GMS---DKKIVQWDMNT---KEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVI--KYISEPHMHSMP 490 (604)
Q Consensus 419 g~~---dg~I~iwD~~s---~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~--~~~~~~~~~~v~ 490 (604)
... ...|.+|.-+. |+....+......|..+.|++++..|+....|. |.+|-..+-.-. ..+.-+....+.
T Consensus 274 ~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~ 352 (928)
T PF04762_consen 274 SQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVN 352 (928)
T ss_pred EEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCC
Confidence 543 35566666332 222222234556899999999999999987665 999988765421 222223344456
Q ss_pred EEEEcCCC-CEEEEEEcCCeEEEEEcCC----c----------------eeec--cc--cc------ccCcccccceEEE
Q 007411 491 SISLHPNT-NWLAAQSLDNQILIYSTRE----R----------------FQLN--KK--KR------FAGHIVAGYACQV 539 (604)
Q Consensus 491 ~l~~sp~g-~~l~s~s~Dg~I~iwd~~~----~----------------~~~~--~~--~~------~~~~~~~~~v~~l 539 (604)
.+.|+|.. ..|.+.+.+|.+..++..- . ..+. .+ .. ...-.....|..+
T Consensus 353 ~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~v 432 (928)
T PF04762_consen 353 FVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDV 432 (928)
T ss_pred ceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEE
Confidence 69999954 4577777667766554321 0 0000 00 00 0011124568899
Q ss_pred EEcCCCCEEEEEcCCCcEEEEeCCC
Q 007411 540 NFSPDGRFVMSGDGEGKCWFWDWKS 564 (604)
Q Consensus 540 ~~spdg~~L~sgs~dG~I~iwd~~t 564 (604)
+|++++..+++-..||.|.+|.+..
T Consensus 433 af~~~~~~~avl~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 433 AFSPSNSRFAVLTSDGSLSIYEWDL 457 (928)
T ss_pred EEeCCCCeEEEEECCCCEEEEEecC
Confidence 9999998899999999999998644
No 292
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=2.3e-07 Score=100.47 Aligned_cols=186 Identities=15% Similarity=0.202 Sum_probs=143.0
Q ss_pred CCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEE
Q 007411 313 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVI 392 (604)
Q Consensus 313 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i 392 (604)
...++|++++ ++.|+-|..+|.|++.+. .+.+ .+...|+.. ..+|.+++||+.||.|.|-.+-+.+..
T Consensus 39 ~D~is~~av~---~~~~~~GtH~g~v~~~~~--~~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~ 106 (846)
T KOG2066|consen 39 NDAISCCAVH---DKFFALGTHRGAVYLTTC--QGNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEI 106 (846)
T ss_pred hhHHHHHHhh---cceeeeccccceEEEEec--CCcc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccc
Confidence 4567888886 679999999999999997 4444 555566654 568999999999999999999999999
Q ss_pred EEeeCCCcceEEEEccC--CCCCcEEEEEEcCCeEEEEeCCC--CceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEE
Q 007411 393 RTFSTGKIPYVVKLNPD--DDKQNILLAGMSDKKIVQWDMNT--KEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLR 468 (604)
Q Consensus 393 ~~~~~~~~~~~~~~~~~--~~~~~~lvsg~~dg~I~iwD~~s--~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~ 468 (604)
..+..+.++.++++.|+ ......+++|+.-| +.++.-+- .+....+..-.|+|.++.|. |++++-++++| |+
T Consensus 107 ~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~ 182 (846)
T KOG2066|consen 107 TQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VK 182 (846)
T ss_pred eeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cE
Confidence 99999999999999998 44456799999888 77775431 11222455677999999995 77899988877 89
Q ss_pred EEECCCCeEEEEeecCCCCc-----ccEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 007411 469 VWEFGIPVVIKYISEPHMHS-----MPSISLHPNTNWLAAQSLDNQILIYSTR 516 (604)
Q Consensus 469 iwdl~~~~~~~~~~~~~~~~-----v~~l~~sp~g~~l~s~s~Dg~I~iwd~~ 516 (604)
|||....+.+..+..++... ...+.|.++.+ |+. +...+|+|..++
T Consensus 183 vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVI-GW~d~v~i~~I~ 233 (846)
T KOG2066|consen 183 VYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVI-GWGDSVKICSIK 233 (846)
T ss_pred EEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEE-ecCCeEEEEEEe
Confidence 99999988888876655322 34567776554 333 456678888887
No 293
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.79 E-value=4.9e-08 Score=92.62 Aligned_cols=165 Identities=12% Similarity=0.144 Sum_probs=103.9
Q ss_pred EEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEEC-----CCcE
Q 007411 307 HTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASY-----DKNI 381 (604)
Q Consensus 307 ~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~-----Dg~I 381 (604)
+++.-|+++-.+-..+-. +..++++..||.+.+++........+.+..-...--+.+....++.+.++.. -+..
T Consensus 83 ~~~a~~sep~p~~~~s~~-~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~ 161 (319)
T KOG4714|consen 83 KVLAKNSEIDPNDACTMT-DNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNF 161 (319)
T ss_pred eeeeccCCCCCccccccc-CCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccce
Confidence 444455554444444433 6789999999999999984322222222221112223333445555555432 2345
Q ss_pred EEEECCCCcEEEEe-eCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCc-eEEEEcCcCCceeEEEEeCC-CCEE
Q 007411 382 KYWDTETGQVIRTF-STGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE-ITQEYDQHLGAVNTITFVDS-NRRF 458 (604)
Q Consensus 382 ~vWD~~t~~~i~~~-~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~-~~~~~~~h~~~V~~i~~sp~-~~~l 458 (604)
++|+++..+.+..- .......+++-+| ..++++++|+.||.+-+||.+... ++..+..|..+|..+.|+|. +..|
T Consensus 162 ~a~~~~p~~t~~~~~~~~~~v~~l~~hp--~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~L 239 (319)
T KOG4714|consen 162 YANTLDPIKTLIPSKKALDAVTALCSHP--AQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHL 239 (319)
T ss_pred eeecccccccccccccccccchhhhCCc--ccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhe
Confidence 56666543322211 1222233444444 556899999999999999999874 44556789999999999985 5689
Q ss_pred EEEeCCCcEEEEECCC
Q 007411 459 VTSSDDKSLRVWEFGI 474 (604)
Q Consensus 459 ~sgs~Dg~I~iwdl~~ 474 (604)
++++.||++..||..+
T Consensus 240 ft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 240 FTCSEDGSLWHWDAST 255 (319)
T ss_pred eEecCCCcEEEEcCCC
Confidence 9999999999999764
No 294
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.78 E-value=3.1e-09 Score=114.85 Aligned_cols=265 Identities=19% Similarity=0.239 Sum_probs=182.1
Q ss_pred ccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCC
Q 007411 300 YIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDK 379 (604)
Q Consensus 300 ~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg 379 (604)
|-..+..++|+.|+...+|++|+-. .+.|+.|+..|.|+++++ .+|.....+.+|..+|+.+.=+.+|..+++.+.-.
T Consensus 1088 FSRFr~w~~frd~~~~fTc~afs~~-~~hL~vG~~~Geik~~nv-~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S 1165 (1516)
T KOG1832|consen 1088 FSRFRSWRSFRDETALFTCIAFSGG-TNHLAVGSHAGEIKIFNV-SSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSS 1165 (1516)
T ss_pred HhhcccchhhhccccceeeEEeecC-CceEEeeeccceEEEEEc-cCccccccccccccccccccccCCcceeeeecccc
Confidence 3445778889999999999999998 889999999999999999 68888888999999999999999998887765433
Q ss_pred --cEEEEECCC-CcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcC----cCCceeEEEEe
Q 007411 380 --NIKYWDTET-GQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ----HLGAVNTITFV 452 (604)
Q Consensus 380 --~I~vWD~~t-~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~----h~~~V~~i~~s 452 (604)
-..+|++.+ +....+|... .++.|+... ..-+.|+......+||+.++..+.++-. ....-++..|+
T Consensus 1166 ~PlsaLW~~~s~~~~~Hsf~ed---~~vkFsn~~---q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~Fs 1239 (1516)
T KOG1832|consen 1166 SPLSALWDASSTGGPRHSFDED---KAVKFSNSL---QFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFS 1239 (1516)
T ss_pred CchHHHhccccccCcccccccc---ceeehhhhH---HHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccC
Confidence 477999854 4455555433 244444332 2345566667899999999987766421 22234788999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCccc
Q 007411 453 DSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIV 532 (604)
Q Consensus 453 p~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~ 532 (604)
|+..+++ .|| .+||.+.+..++.+..-. .-..-.|||+|..++.-+ .|||+++-..+.....+
T Consensus 1240 P~D~LIl---ndG--vLWDvR~~~aIh~FD~ft--~~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~L----- 1302 (1516)
T KOG1832|consen 1240 PCDTLIL---NDG--VLWDVRIPEAIHRFDQFT--DYGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSL----- 1302 (1516)
T ss_pred CCcceEe---eCc--eeeeeccHHHHhhhhhhe--ecccccccCCCceEEeec-----hhhhhHHHHHHhcCccc-----
Confidence 9987776 355 479999987776664311 222346999999988866 58999886555433332
Q ss_pred ccceEEEEEcCCCCEEEEEcC------C-----------CcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEE
Q 007411 533 AGYACQVNFSPDGRFVMSGDG------E-----------GKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVAT 593 (604)
Q Consensus 533 ~~~v~~l~~spdg~~L~sgs~------d-----------G~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~t 593 (604)
--|.+.|+..|..++..-. | ...+-++....+.+.++.+ ..++..++-.|.+ .+|..
T Consensus 1303 --dqc~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v-~R~~~Dlct~~~D-~~l~v 1376 (1516)
T KOG1832|consen 1303 --DQCAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPV-DRCLLDLCTEPTD-SFLGV 1376 (1516)
T ss_pred --cceEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeec-ccchhhhhcCCcc-ceEEE
Confidence 2356889888887654320 0 1233444445555666653 2345666666633 34443
No 295
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.77 E-value=1e-05 Score=80.83 Aligned_cols=232 Identities=13% Similarity=0.135 Sum_probs=156.6
Q ss_pred eeeEEEcc-CCCEEEEEECCC-cEEEEECCCCcEEEEeeCCCcce---EEEEccCCCCCcEEEEEE-----cCCeEEEEe
Q 007411 360 VRDISFCN-DGTKFLTASYDK-NIKYWDTETGQVIRTFSTGKIPY---VVKLNPDDDKQNILLAGM-----SDKKIVQWD 429 (604)
Q Consensus 360 V~~l~fsp-dg~~L~s~s~Dg-~I~vWD~~t~~~i~~~~~~~~~~---~~~~~~~~~~~~~lvsg~-----~dg~I~iwD 429 (604)
...++.+| .+..++.+-.-| .+.+||..+++....+.....-. -..|++++ .+|++.- ..|.|-|||
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG---~~LytTEnd~~~g~G~IgVyd 83 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDG---RLLYTTENDYETGRGVIGVYD 83 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCC---CEEEEeccccCCCcEEEEEEE
Confidence 45677888 455566666555 47889999999988776543332 34555544 4666653 358999999
Q ss_pred CC-CCceEEEEcCcCCceeEEEEeCCCCEEEEEe------------------CCCcEEEEECCCCeEEEEeec---CCCC
Q 007411 430 MN-TKEITQEYDQHLGAVNTITFVDSNRRFVTSS------------------DDKSLRVWEFGIPVVIKYISE---PHMH 487 (604)
Q Consensus 430 ~~-s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs------------------~Dg~I~iwdl~~~~~~~~~~~---~~~~ 487 (604)
.. +.+.+.++..|.-.-..+.+.|+++.|+++- .+-+|.+.|..++..+.+... .|..
T Consensus 84 ~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~l 163 (305)
T PF07433_consen 84 AARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQL 163 (305)
T ss_pred CcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccc
Confidence 99 6688889998888888999999998887763 234567777778877766432 3667
Q ss_pred cccEEEEcCCCCEEEEEEcCCe-------EEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEc-CCCcEEE
Q 007411 488 SMPSISLHPNTNWLAAQSLDNQ-------ILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD-GEGKCWF 559 (604)
Q Consensus 488 ~v~~l~~sp~g~~l~s~s~Dg~-------I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs-~dG~I~i 559 (604)
+|..+++.++|..++.+-..|. |-+++............-.-.....|+-+|+++++|.++++.+ ..|.+.+
T Consensus 164 SiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~ 243 (305)
T PF07433_consen 164 SIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAV 243 (305)
T ss_pred ceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEE
Confidence 8999999999876666544332 3344332221111111111122357888999999999886665 5678999
Q ss_pred EeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCC
Q 007411 560 WDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDG 598 (604)
Q Consensus 560 wd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG 598 (604)
||..+++.+......+ +..++-.+ ++ +++|.|...
T Consensus 244 ~d~~tg~~~~~~~l~D--~cGva~~~-~~-f~~ssG~G~ 278 (305)
T PF07433_consen 244 WDAATGRLLGSVPLPD--ACGVAPTD-DG-FLVSSGQGQ 278 (305)
T ss_pred EECCCCCEeeccccCc--eeeeeecC-Cc-eEEeCCCcc
Confidence 9999999988766443 45666665 33 777766443
No 296
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.76 E-value=1.3e-07 Score=103.33 Aligned_cols=185 Identities=17% Similarity=0.213 Sum_probs=139.0
Q ss_pred CCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCcee
Q 007411 368 DGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVN 447 (604)
Q Consensus 368 dg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~ 447 (604)
++..++.|+....+..+|+++.+..+........ +..+.. ++.++++|...|+|.+-|.++.+.++++..|.+.|.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~-v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siS 221 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASG-VTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSIS 221 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCc-eEEEEe---cCcEEEeecccceEEeecCCcCceeeeeecccccee
Confidence 4567888888888999999999888777655533 222332 226899999999999999999999999999999998
Q ss_pred EEEEeCCCCEEEEEeC---------CCcEEEEECCCCeEEEEeecCCCCcccEEEEcCC-CCEEEEEEcCCeEEEEEcCC
Q 007411 448 TITFVDSNRRFVTSSD---------DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPN-TNWLAAQSLDNQILIYSTRE 517 (604)
Q Consensus 448 ~i~~sp~~~~l~sgs~---------Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~-g~~l~s~s~Dg~I~iwd~~~ 517 (604)
.+.. .|+.|++|+. |..|+|||++..+.+.-+.. .....-+.|+|. ...+++++..|+..+.|..+
T Consensus 222 DfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~--~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~ 297 (1118)
T KOG1275|consen 222 DFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQF--PYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTAT 297 (1118)
T ss_pred eeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCccc--ccCchhhhhcccccceEEEEecccceeeccccc
Confidence 8877 5788998874 56689999998776655532 222345677876 46788889999999988432
Q ss_pred ceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEe
Q 007411 518 RFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 561 (604)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd 561 (604)
-... ....+.-+.+...+..+++|++|+.++.|..+|.|.+|.
T Consensus 298 lsNP-~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 298 LSNP-PAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cCCC-ccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 1111 111222233456688999999999999999999999997
No 297
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.75 E-value=7.8e-06 Score=79.42 Aligned_cols=239 Identities=11% Similarity=0.113 Sum_probs=132.7
Q ss_pred EEEcCCCCCEEEEEECCCcEEEEecCCCC-eeeEEec---CCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEE
Q 007411 319 IRFFPKYGHLILSAGMDTKVKIWDVVNSG-KCMRTYM---GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRT 394 (604)
Q Consensus 319 l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~-~~~~~~~---~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~ 394 (604)
++.+++ |++||.- .|..|.|=...++- .++...+ ...-.-+.++||||+.+||.+...|+|+++|+.... +..
T Consensus 3 ~~~~~~-Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~ 79 (282)
T PF15492_consen 3 LALSSD-GKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFV 79 (282)
T ss_pred eeecCC-CcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce-eEE
Confidence 455666 7777664 45667766553222 1222222 223346789999999999999999999999997543 333
Q ss_pred eeCCC--------cceEEEEccCCCC---CcEEEEEEcCCeEEEEeCCCC-----ceEEEE--c-CcCCceeEEEEeCCC
Q 007411 395 FSTGK--------IPYVVKLNPDDDK---QNILLAGMSDKKIVQWDMNTK-----EITQEY--D-QHLGAVNTITFVDSN 455 (604)
Q Consensus 395 ~~~~~--------~~~~~~~~~~~~~---~~~lvsg~~dg~I~iwD~~s~-----~~~~~~--~-~h~~~V~~i~~sp~~ 455 (604)
+.... .+..+.|...... ...|++-...|.++-|-+..+ +....+ . .+...|+++.++|..
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 32211 1122223222111 235777778888887765322 222332 2 246789999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCC-EE-EEEEcCCe------EEEEEcCCceeecccccc
Q 007411 456 RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTN-WL-AAQSLDNQ------ILIYSTRERFQLNKKKRF 527 (604)
Q Consensus 456 ~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~-~l-~s~s~Dg~------I~iwd~~~~~~~~~~~~~ 527 (604)
++|++|+.... ..+. .......+++-.+-.+.. +. ++...|+. -.+|.+.+.. ... .
T Consensus 160 ~LLlVgG~~~~------~~~~-----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~-~fs---~ 224 (282)
T PF15492_consen 160 RLLLVGGCEQN------QDGM-----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFK-FFS---R 224 (282)
T ss_pred CEEEEeccCCC------CCcc-----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeecccee-eee---c
Confidence 98888765322 0000 000111122111111111 11 11111111 1122221110 000 0
Q ss_pred cCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCC
Q 007411 528 AGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEG 576 (604)
Q Consensus 528 ~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~ 576 (604)
. ......|..+.+||||.+|++...+|.|.+|++.+.++...+..+..
T Consensus 225 ~-~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~eq 272 (282)
T PF15492_consen 225 Q-GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDEQ 272 (282)
T ss_pred c-ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhhC
Confidence 0 11245677899999999999999999999999999988888775544
No 298
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.75 E-value=4.4e-06 Score=82.27 Aligned_cols=216 Identities=16% Similarity=0.117 Sum_probs=137.0
Q ss_pred CCcEEEEECCCCcEEEEeeCCCcc-eEE-EEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCC
Q 007411 378 DKNIKYWDTETGQVIRTFSTGKIP-YVV-KLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSN 455 (604)
Q Consensus 378 Dg~I~vWD~~t~~~i~~~~~~~~~-~~~-~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~ 455 (604)
+|+|..||..+|+.+......... ... .....+ ..+++++.++.|+.||..+|+.+..+.. .+.+...-.. .+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~-~~ 76 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDG---GRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVV-DG 76 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEET---TEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEE-ET
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeC---CEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeee-cc
Confidence 689999999999999998763311 122 122111 4577778999999999999999888865 3332222222 34
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEe-ecCC--CCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCccc
Q 007411 456 RRFVTSSDDKSLRVWEFGIPVVIKYI-SEPH--MHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIV 532 (604)
Q Consensus 456 ~~l~sgs~Dg~I~iwdl~~~~~~~~~-~~~~--~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~ 532 (604)
..+++++.++.|+.+|..++..+... .... ......+.....+..++++..++.|..+|+.++..+.....-.....
T Consensus 77 ~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~ 156 (238)
T PF13360_consen 77 GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGS 156 (238)
T ss_dssp TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS
T ss_pred cccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCC
Confidence 56677778889999999999888774 3211 11122223333488899999999999999999887654443111100
Q ss_pred ------ccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007411 533 ------AGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 533 ------~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
......+.+. ++ .++.++.+|.+..+|+.+++.+.... ...+..+ ... .+..|+.++.+|.|.+||
T Consensus 157 ~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~-~~~-~~~~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 157 SPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSL-PSV-DGGTLYVTSSDGRLYALD 228 (238)
T ss_dssp --EEEETTEEEEEECC-TT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECEC-EEC-CCTEEEEEETTTEEEEEE
T ss_pred cceeeecccccceEEE-CC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccCC-cee-eCCEEEEEeCCCEEEEEE
Confidence 0011223333 44 77778888864444999999775443 2223332 233 455777777899999886
No 299
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.73 E-value=2.8e-06 Score=90.78 Aligned_cols=258 Identities=10% Similarity=0.082 Sum_probs=158.9
Q ss_pred CCEEEEEECCCcEEEEecCCCCeeeEEecCCCC----------cee-eEEEccCCCEEEEEECCCcEEEEECCCCcEEEE
Q 007411 326 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSK----------AVR-DISFCNDGTKFLTASYDKNIKYWDTETGQVIRT 394 (604)
Q Consensus 326 g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~----------~V~-~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~ 394 (604)
+..|++++.+|.|.-+|. .+++.+....-... .+. .+.. .+..++.++.+|.|..+|.++|+.+.+
T Consensus 69 ~~~vy~~~~~g~l~ald~-~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~ 145 (394)
T PRK11138 69 YNKVYAADRAGLVKALDA-DTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQ 145 (394)
T ss_pred CCEEEEECCCCeEEEEEC-CCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCccc
Confidence 557777788888888888 56777665542210 000 1111 356777888899999999999999988
Q ss_pred eeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCce-----eEEEEeCCCCEEEEEeCCCcEEE
Q 007411 395 FSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAV-----NTITFVDSNRRFVTSSDDKSLRV 469 (604)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V-----~~i~~sp~~~~l~sgs~Dg~I~i 469 (604)
..........-... ...++++..++.|+.+|..+|+.+..+......+ .+-... +..++.++.+|.+..
T Consensus 146 ~~~~~~~~ssP~v~----~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~~~v~~~~~~g~v~a 219 (394)
T PRK11138 146 TKVAGEALSRPVVS----DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--FGGAIVGGDNGRVSA 219 (394)
T ss_pred ccCCCceecCCEEE----CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--CCEEEEEcCCCEEEE
Confidence 87654322111111 1357778889999999999999888775431111 111111 235667778899999
Q ss_pred EECCCCeEEEEeecCCC---C---cccEEEEcC--CCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEE
Q 007411 470 WEFGIPVVIKYISEPHM---H---SMPSISLHP--NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNF 541 (604)
Q Consensus 470 wdl~~~~~~~~~~~~~~---~---~v~~l~~sp--~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~ 541 (604)
+|..+++..-....... . ....+..+| .+..+++++.++.+..+|..++..+.... +.. ...+.
T Consensus 220 ~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~-~~~------~~~~~- 291 (394)
T PRK11138 220 VLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKRE-YGS------VNDFA- 291 (394)
T ss_pred EEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeec-CCC------ccCcE-
Confidence 99888765543321110 0 011111122 35567778889999999998876554322 111 00111
Q ss_pred cCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCC-CcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007411 542 SPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHE-GVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 542 spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~-~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
..+..|+.++.+|.|..+|..+|+.+.....-. ....+.... +.+|+.++.||.|.+.|
T Consensus 292 -~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~---~g~l~v~~~~G~l~~ld 351 (394)
T PRK11138 292 -VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY---NGYLVVGDSEGYLHWIN 351 (394)
T ss_pred -EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE---CCEEEEEeCCCEEEEEE
Confidence 246678888899999999999998876543211 112222222 24677788888887654
No 300
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.72 E-value=4e-08 Score=96.63 Aligned_cols=165 Identities=12% Similarity=0.157 Sum_probs=130.7
Q ss_pred EEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCC-----eEEEEeecCCCCcccE
Q 007411 417 LAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP-----VVIKYISEPHMHSMPS 491 (604)
Q Consensus 417 vsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~-----~~~~~~~~~~~~~v~~ 491 (604)
++.+.+-.|.+-|+.+|-. +.+. ..+.|.++.|...+++++.|+.+|.|..+|++.. .+...+ -|...|++
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl--yh~Ssvts 303 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL--YHDSSVTS 303 (425)
T ss_pred ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE--EcCcchhh
Confidence 4555677888889888742 3343 6678999999998999999999999999999864 333444 47888999
Q ss_pred EEEcC-CCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEE
Q 007411 492 ISLHP-NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRT 570 (604)
Q Consensus 492 l~~sp-~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~ 570 (604)
+..-. ++.+|++.+.+|.|.+||++-.++-..+..+.||.+...-.-+-..+....|++++.|...+||.+++|.++.+
T Consensus 304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~t 383 (425)
T KOG2695|consen 304 LQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCT 383 (425)
T ss_pred hhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeec
Confidence 88776 78899999999999999998766655667888998766555566778888999999999999999999999998
Q ss_pred EecCC----CcEEEEEEec
Q 007411 571 LKCHE----GVCIGCEWHP 585 (604)
Q Consensus 571 l~~h~----~~V~~v~~sp 585 (604)
+.... ..|.+++|..
T Consensus 384 ipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 384 IPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred cCCCCccccccccceehhc
Confidence 87433 3456666654
No 301
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.70 E-value=4e-07 Score=86.58 Aligned_cols=197 Identities=10% Similarity=0.138 Sum_probs=122.3
Q ss_pred eEEEEEcCCCCCEEEEEECCCcEEEEec-----------CCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEE
Q 007411 316 VSAIRFFPKYGHLILSAGMDTKVKIWDV-----------VNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYW 384 (604)
Q Consensus 316 V~~l~fsp~~g~~L~sgs~Dg~I~IWd~-----------~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vW 384 (604)
|+.+.++-+ ..|+++..++.+..... ...-...+.+..|+++-.+-+.+-.++.++++..||.+.+.
T Consensus 39 ~~~~~~v~~--~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~ 116 (319)
T KOG4714|consen 39 LSKVSLSAE--YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVF 116 (319)
T ss_pred EEEeechhh--heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEE
Confidence 555666544 55666666655554433 11123344455565555555555567789999999999999
Q ss_pred ECCCCcEE-EEeeCCCcc-eEEEEccCCCCCcEEEEEE-----cCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCC-
Q 007411 385 DTETGQVI-RTFSTGKIP-YVVKLNPDDDKQNILLAGM-----SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNR- 456 (604)
Q Consensus 385 D~~t~~~i-~~~~~~~~~-~~~~~~~~~~~~~~lvsg~-----~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~- 456 (604)
+.+.-..+ ..+...+.. ...+... .++++.++. .-+..+.|+++..+....-..-...|++++-+|..+
T Consensus 117 s~~~~~~~~~~i~~~~~~~as~~~~~---~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~ 193 (319)
T KOG4714|consen 117 STDKDLALMSRIPSIHSGSASRKICR---HGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQH 193 (319)
T ss_pred echHHHhhhhhcccccccccccceee---cccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCccccc
Confidence 98752111 111111110 0111111 112333322 234556666654433322222344599999998654
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCC-CCEEEEEEcCCeEEEEEcCC
Q 007411 457 RFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPN-TNWLAAQSLDNQILIYSTRE 517 (604)
Q Consensus 457 ~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~-g~~l~s~s~Dg~I~iwd~~~ 517 (604)
.+++|+.||.+-+||.+.......+...|..+|.-+-|||. +..|++++.||.+..||..+
T Consensus 194 ~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 194 LVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred EEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 56778899999999999886666666679999999999995 67899999999999999875
No 302
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.64 E-value=8.4e-06 Score=92.32 Aligned_cols=271 Identities=11% Similarity=0.124 Sum_probs=159.2
Q ss_pred CCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEE
Q 007411 314 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIR 393 (604)
Q Consensus 314 ~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~ 393 (604)
..|.++.|.-+ ..-++.+...|.|.+-|.. ...+.....-...|.+++|+||+..++..+..++|.+-. .+..++.
T Consensus 69 ~~i~s~~fl~d-~~~i~v~~~~G~iilvd~e--t~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT-~~f~~i~ 144 (1265)
T KOG1920|consen 69 DEIVSVQFLAD-TNSICVITALGDIILVDPE--TLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMT-KDFEPIA 144 (1265)
T ss_pred cceEEEEEecc-cceEEEEecCCcEEEEccc--ccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEe-ccccchh
Confidence 57999999998 7788888889999999873 223333334567899999999999999998877766543 3333322
Q ss_pred EeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCc-----eEE-----EEcCcCCceeEEEEeCCCCEEEEE--
Q 007411 394 TFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE-----ITQ-----EYDQHLGAVNTITFVDSNRRFVTS-- 461 (604)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~-----~~~-----~~~~h~~~V~~i~~sp~~~~l~sg-- 461 (604)
..... .+.....-++.++....=..+.-..|+ .+. ........=++|+|-.+|.+|++.
T Consensus 145 E~~L~---------~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~ 215 (1265)
T KOG1920|consen 145 EKPLD---------ADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFV 215 (1265)
T ss_pred ccccc---------cccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEE
Confidence 21110 000001112222222211111111110 000 000112223578999999999883
Q ss_pred ---eCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEE---cCCeEEEEEcCCceeecccccccCcccccc
Q 007411 462 ---SDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS---LDNQILIYSTRERFQLNKKKRFAGHIVAGY 535 (604)
Q Consensus 462 ---s~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s---~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 535 (604)
...+.|+|||-. ..+.....+..+--.+++|-|.|..+++.. .|+.|.+|.-+.-..-. ..+.-......
T Consensus 216 ~~~~~~RkirV~drE--g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~--f~l~~p~de~~ 291 (1265)
T KOG1920|consen 216 ESETGTRKIRVYDRE--GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGE--FVLPFPLDEKE 291 (1265)
T ss_pred eccCCceeEEEeccc--chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccc--cccCCcccccc
Confidence 233789999976 334444455666678999999999988864 45679888754322111 11111222334
Q ss_pred eEEEEEcCCCCEEEE---EcCCCcEEEEeCCCCee--EEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEe
Q 007411 536 ACQVNFSPDGRFVMS---GDGEGKCWFWDWKSCKV--FRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 603 (604)
Q Consensus 536 v~~l~~spdg~~L~s---gs~dG~I~iwd~~t~~~--~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vW 603 (604)
+..++|+.++..|++ ......|++|-+.+..- .+.++...... +.|+|-....|..-..+|.+.++
T Consensus 292 ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~ 362 (1265)
T KOG1920|consen 292 VEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVR 362 (1265)
T ss_pred hheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEE
Confidence 778999999999987 44445599998776442 23333322222 77777544445555456665544
No 303
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.63 E-value=4.4e-05 Score=78.41 Aligned_cols=251 Identities=12% Similarity=0.115 Sum_probs=164.2
Q ss_pred CEEEEEECCCcEEEEecCCCCeeeEEecCCCCc--eeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEe-e--C---C
Q 007411 327 HLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKA--VRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTF-S--T---G 398 (604)
Q Consensus 327 ~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~--V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~-~--~---~ 398 (604)
+..+....+|.=.||++.-.++-++. |+.- -.+=..+.||+.++.. ..|.|.++|..+.+....- . . .
T Consensus 237 RvYFlsD~eG~GnlYSvdldGkDlrr---HTnFtdYY~R~~nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~ 312 (668)
T COG4946 237 RVYFLSDHEGVGNLYSVDLDGKDLRR---HTNFTDYYPRNANSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKK 312 (668)
T ss_pred eEEEEecccCccceEEeccCCchhhh---cCCchhccccccCCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCcccccc
Confidence 44445566776667766445554433 3321 1222345688887754 4589999998876543221 1 0 1
Q ss_pred CcceE-------EEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCC-cEEEE
Q 007411 399 KIPYV-------VKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDK-SLRVW 470 (604)
Q Consensus 399 ~~~~~-------~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg-~I~iw 470 (604)
..+.. -.++.. ++.+++..+ .|+..+.+...+-.++. +|.+.|.-..+.-++.-++.|..|| .|-|+
T Consensus 313 k~~k~~~pskyledfa~~--~Gd~ia~VS-RGkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iy 387 (668)
T COG4946 313 KQPKFVNPSKYLEDFAVV--NGDYIALVS-RGKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIY 387 (668)
T ss_pred ccccccCHHHhhhhhccC--CCcEEEEEe-cCcEEEECCCCCeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEE
Confidence 11111 112222 234555554 46777777665544443 5777788888888888999999999 89999
Q ss_pred ECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEE
Q 007411 471 EFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMS 550 (604)
Q Consensus 471 dl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~s 550 (604)
|.+.+...+.. +..+.|.++..+|+|++++++.....|.++|+.++..... .....+.|+.++|||++++||-
T Consensus 388 d~~~~e~kr~e--~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~i-----dkS~~~lItdf~~~~nsr~iAY 460 (668)
T COG4946 388 DKDGGEVKRIE--KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLI-----DKSEYGLITDFDWHPNSRWIAY 460 (668)
T ss_pred ecCCceEEEee--CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEe-----cccccceeEEEEEcCCceeEEE
Confidence 99887654443 4677899999999999999999999999999988754321 1222467889999999999998
Q ss_pred EcCCC----cEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEe
Q 007411 551 GDGEG----KCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCG 595 (604)
Q Consensus 551 gs~dG----~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg 595 (604)
+--+| .|+++|+.+++....-. ..+.=.+-+|.| ++++|.--+
T Consensus 461 afP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~-d~ryLYfLs 507 (668)
T COG4946 461 AFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDP-DGRYLYFLS 507 (668)
T ss_pred ecCcceeeeeEEEEecCCCeEEEecC-CcccccCcccCC-CCcEEEEEe
Confidence 77665 68999999988766443 222224456777 555554433
No 304
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.58 E-value=9.9e-06 Score=77.55 Aligned_cols=234 Identities=8% Similarity=-0.037 Sum_probs=144.8
Q ss_pred CCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEcc-CCCEEEEEECCCcEEEEECCCCcEEEEeeCC-CcceE
Q 007411 326 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYV 403 (604)
Q Consensus 326 g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fsp-dg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~-~~~~~ 403 (604)
..+|+.|+.-|...+|........+.....|...|+-+.=.. ....+..++.|.++++.+++-+......... -....
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns 163 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS 163 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence 468999999999999999434444444444544433222111 2235777888999999988765443333222 12334
Q ss_pred EEEccCCCCCcEEEEEEcCCeEEEEeCCCC-c-eEE-EEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 007411 404 VKLNPDDDKQNILLAGMSDKKIVQWDMNTK-E-ITQ-EYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKY 480 (604)
Q Consensus 404 ~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~-~-~~~-~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~ 480 (604)
+.+.+++ .++++.+....|..|.+... + .+. ........-.+..|+.....|++++.||++.|||++.......
T Consensus 164 ~~~snd~---~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~ 240 (344)
T KOG4532|consen 164 LHYSNDP---SWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA 240 (344)
T ss_pred eEEcCCC---ceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchh
Confidence 4444443 67888888889999988643 2 223 2233445567889999999999999999999999986543221
Q ss_pred ----eecCCCCcccEEEEcCCCC--EEEEEEcCCeEEEEEcCCceeecccccccCc---ccccceEEEEEcCCCCEEEEE
Q 007411 481 ----ISEPHMHSMPSISLHPNTN--WLAAQSLDNQILIYSTRERFQLNKKKRFAGH---IVAGYACQVNFSPDGRFVMSG 551 (604)
Q Consensus 481 ----~~~~~~~~v~~l~~sp~g~--~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~---~~~~~v~~l~~spdg~~L~sg 551 (604)
....|.+.+..+.|++.|. +|+..-.-+.+.+.|+++......+...... .....+....|+.++.-+.+.
T Consensus 241 ~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~ 320 (344)
T KOG4532|consen 241 EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVK 320 (344)
T ss_pred hhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccc
Confidence 2234788899999998663 4555455578999999987655443322211 011224455666666555554
Q ss_pred cCCCcEEEEeCC
Q 007411 552 DGEGKCWFWDWK 563 (604)
Q Consensus 552 s~dG~I~iwd~~ 563 (604)
+.+ .+.=|++.
T Consensus 321 ~e~-~~ae~ni~ 331 (344)
T KOG4532|consen 321 NEL-QGAEYNIL 331 (344)
T ss_pred cch-hhheeecc
Confidence 433 23344443
No 305
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.57 E-value=4.6e-05 Score=81.63 Aligned_cols=199 Identities=9% Similarity=0.074 Sum_probs=120.0
Q ss_pred cEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEE-EEc--CCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCC
Q 007411 380 NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLA-GMS--DKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNR 456 (604)
Q Consensus 380 ~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvs-g~~--dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~ 456 (604)
.|.+-|..... .+.+..+.....-.|+|++. .+++. ... ...|+++|+.+++...... ..+......|+|+|+
T Consensus 170 ~l~~~d~dg~~-~~~~~~~~~~~~p~wSpDG~--~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 170 NIVLADYTLTY-QKVIVKGGLNIFPKWANKEQ--TAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGS 245 (419)
T ss_pred eEEEECCCCCc-eeEEccCCCeEeEEECCCCC--cEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCC
Confidence 56665665443 33333333445566777543 33443 332 4679999999887655443 555667788999998
Q ss_pred EEEEEe-CC--CcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcC-C--eEEEEEcCCceeecccccccCc
Q 007411 457 RFVTSS-DD--KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD-N--QILIYSTRERFQLNKKKRFAGH 530 (604)
Q Consensus 457 ~l~sgs-~D--g~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~D-g--~I~iwd~~~~~~~~~~~~~~~~ 530 (604)
.++... .+ ..|.++|+..+... .+.. .........|+|+|+.|+..+.. + .|.++++.++...... +.+.
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~-~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt--~~g~ 321 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTLT-QITN-YPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVV--FHGK 321 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcEE-Eccc-CCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCc--cCCC
Confidence 776543 33 46888888776543 3332 22233456899999988877643 2 5777788765432211 1121
Q ss_pred ccccceEEEEEcCCCCEEEEEcCC---------CcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEe
Q 007411 531 IVAGYACQVNFSPDGRFVMSGDGE---------GKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCG 595 (604)
Q Consensus 531 ~~~~~v~~l~~spdg~~L~sgs~d---------G~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg 595 (604)
. ...|||||++|+..... ..|++.|+.++... .+... +......|+| ++..|+...
T Consensus 322 ----~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SP-DG~~I~f~~ 386 (419)
T PRK04043 322 ----N--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSS-DGGSIMFIK 386 (419)
T ss_pred ----c--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECC-CCCEEEEEE
Confidence 1 24899999998766543 36888898887653 34332 2334688999 455444433
No 306
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.56 E-value=9e-07 Score=89.07 Aligned_cols=153 Identities=14% Similarity=0.197 Sum_probs=106.7
Q ss_pred ceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeE----EEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCcee
Q 007411 445 AVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVV----IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQ 520 (604)
Q Consensus 445 ~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~----~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~ 520 (604)
.+..+..++.+++++++..+....++++..... .... .....-+++.+..+...+.++..-|.++-+|+-....
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~--~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~ 141 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS--CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS 141 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe--ecccCcceeeeeeccceEEEEeecCCceeeeeecccc
Confidence 344556778888899888888877887754432 2221 1222344555555555555555555555554433211
Q ss_pred ecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEe-cCCCcEEEEEEecCCCCEEEEEeCCCc
Q 007411 521 LNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK-CHEGVCIGCEWHPLEQSKVATCGWDGL 599 (604)
Q Consensus 521 ~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~-~h~~~V~~v~~sp~~~~~l~tgg~DG~ 599 (604)
......-||. ..+..++|+||+++|++++.|..|++-.......+..+- +|..-|..++.-+ + ..|+++|.|++
T Consensus 142 -~~~~~~lGhv--Sml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~-~-~~LlS~sGD~t 216 (390)
T KOG3914|consen 142 -GRCEPILGHV--SMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD-N-YLLLSGSGDKT 216 (390)
T ss_pred -cCcchhhhhh--hhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc-C-ceeeecCCCCc
Confidence 2233455663 568899999999999999999999999888777776665 6999999999987 3 45899999999
Q ss_pred EEEeC
Q 007411 600 IKYWD 604 (604)
Q Consensus 600 I~vWD 604 (604)
|++||
T Consensus 217 lr~Wd 221 (390)
T KOG3914|consen 217 LRLWD 221 (390)
T ss_pred EEEEe
Confidence 99997
No 307
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.56 E-value=0.00016 Score=71.82 Aligned_cols=217 Identities=16% Similarity=0.196 Sum_probs=136.2
Q ss_pred EEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEc-cCCCEEEEEECCCcEEEEECCCCcEEEEee
Q 007411 318 AIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFC-NDGTKFLTASYDKNIKYWDTETGQVIRTFS 396 (604)
Q Consensus 318 ~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fs-pdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~ 396 (604)
++.|.+..+.++++--..+.|..|+. ..+.. ..+.... ...+++. ++ ..|+.+... .+.++|+.+++......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~-~~~~~-~~~~~~~--~~G~~~~~~~-g~l~v~~~~-~~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDP-DTGEV-EVIDLPG--PNGMAFDRPD-GRLYVADSG-GIAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEET-TTTEE-EEEESSS--EEEEEEECTT-SEEEEEETT-CEEEEETTTTEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEEC-CCCeE-EEEecCC--CceEEEEccC-CEEEEEEcC-ceEEEecCCCcEEEEee
Confidence 56788854788888778999999998 34433 2232222 6777777 56 455656554 45666999986654443
Q ss_pred C--C--C--cceEEEEccCCCCCcEEEEEEcC--------CeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEE-EE
Q 007411 397 T--G--K--IPYVVKLNPDDDKQNILLAGMSD--------KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFV-TS 461 (604)
Q Consensus 397 ~--~--~--~~~~~~~~~~~~~~~~lvsg~~d--------g~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~-sg 461 (604)
. . . .+.-+.+.++ +++.++.... |.|+.++.. ++..... ......+.|+|+|+++.|+ +-
T Consensus 78 ~~~~~~~~~~~ND~~vd~~---G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~~pNGi~~s~dg~~lyv~d 152 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPD---GNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLGFPNGIAFSPDGKTLYVAD 152 (246)
T ss_dssp EETTCSCTEEEEEEEE-TT---S-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEESSEEEEEEETTSSEEEEEE
T ss_pred ccCCCcccCCCceEEEcCC---CCEEEEecCCCccccccccceEEECCC-CeEEEEe-cCcccccceEECCcchheeecc
Confidence 3 1 2 2334555543 3555555443 668888888 5544333 3456789999999998765 56
Q ss_pred eCCCcEEEEECCCCeE----EEEeecCCC--CcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccc
Q 007411 462 SDDKSLRVWEFGIPVV----IKYISEPHM--HSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGY 535 (604)
Q Consensus 462 s~Dg~I~iwdl~~~~~----~~~~~~~~~--~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 535 (604)
+..+.|..+++..... ...+..... .....+++..+|++.++....+.|.+++.. +..+..+.. . ...
T Consensus 153 s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~-p----~~~ 226 (246)
T PF08450_consen 153 SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIEL-P----VPR 226 (246)
T ss_dssp TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE--S----SSS
T ss_pred cccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcC-C----CCC
Confidence 6778899999853221 122221122 247789999999988888889999999987 444433322 1 135
Q ss_pred eEEEEE-cCCCCEEEEE
Q 007411 536 ACQVNF-SPDGRFVMSG 551 (604)
Q Consensus 536 v~~l~~-spdg~~L~sg 551 (604)
+++++| .++.+.|+..
T Consensus 227 ~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 227 PTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEEEEESTTSSEEEEE
T ss_pred EEEEEEECCCCCEEEEE
Confidence 677889 4666666544
No 308
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.53 E-value=1.3e-05 Score=83.58 Aligned_cols=247 Identities=16% Similarity=0.216 Sum_probs=141.5
Q ss_pred CeEEEEEcCCCCCEEEEEEC-----------CCcEEEEecCCCCeeeEEecCC--CCce-eeEEEccCCCEEEEEECCCc
Q 007411 315 GVSAIRFFPKYGHLILSAGM-----------DTKVKIWDVVNSGKCMRTYMGH--SKAV-RDISFCNDGTKFLTASYDKN 380 (604)
Q Consensus 315 ~V~~l~fsp~~g~~L~sgs~-----------Dg~I~IWd~~~~~~~~~~~~~h--~~~V-~~l~fspdg~~L~s~s~Dg~ 380 (604)
.|.-+.|||. .++|+|-+. ...++|||+ .+|...+.+... ...+ .-+.||.|++++|.-.. ..
T Consensus 251 ~Vq~idfSP~-EkYLVT~s~~p~~~~~~d~e~~~l~IWDI-~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~s 327 (698)
T KOG2314|consen 251 GVQFIDFSPN-EKYLVTYSPEPIIVEEDDNEGQQLIIWDI-ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NS 327 (698)
T ss_pred CceeeecCCc-cceEEEecCCccccCcccCCCceEEEEEc-cccchhcceeccCCCccccceEEeccCCceeEEecc-ce
Confidence 4888999999 899999764 257899999 688887777652 2222 34578999998887665 46
Q ss_pred EEEEECCCCcEE----------EEeeC--------------CCcceE----------------------EEEccCCCCCc
Q 007411 381 IKYWDTETGQVI----------RTFST--------------GKIPYV----------------------VKLNPDDDKQN 414 (604)
Q Consensus 381 I~vWD~~t~~~i----------~~~~~--------------~~~~~~----------------------~~~~~~~~~~~ 414 (604)
|.|++..+..++ +.|.- ...+.- +.+++.. ++.
T Consensus 328 isIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk-~gd 406 (698)
T KOG2314|consen 328 ISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQK-SGD 406 (698)
T ss_pred EEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEecc-CCc
Confidence 788876542211 00100 000000 1111111 111
Q ss_pred EEEEE----------EcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeC---CCcEEEEECCC-CeEEEE
Q 007411 415 ILLAG----------MSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD---DKSLRVWEFGI-PVVIKY 480 (604)
Q Consensus 415 ~lvsg----------~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~---Dg~I~iwdl~~-~~~~~~ 480 (604)
+|+.- +.-..+-|+.++...+....-.-...|...+|-|.|+.|++-+. ..++.+|.+.+ ......
T Consensus 407 yLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~l 486 (698)
T KOG2314|consen 407 YLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSL 486 (698)
T ss_pred EEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhh
Confidence 22111 01112333333333221111124566788899999998877654 35788888873 322222
Q ss_pred eecCCCCcccEEEEcCCCCEEEEEE---cCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcE
Q 007411 481 ISEPHMHSMPSISLHPNTNWLAAQS---LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKC 557 (604)
Q Consensus 481 ~~~~~~~~v~~l~~sp~g~~l~s~s---~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I 557 (604)
+..-.....+.+.|+|.|++++++. ..|.+.++|+...... ......| ...+.+.|.|.|+|++++++-++.
T Consensus 487 Vk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k--~~~~~eh---~~at~veWDPtGRYvvT~ss~wrh 561 (698)
T KOG2314|consen 487 VKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLK--DTASPEH---FAATEVEWDPTGRYVVTSSSSWRH 561 (698)
T ss_pred hhhhcccccceEEEcCCCcEEEEEEecccccceEEEecchhhhh--hccCccc---cccccceECCCCCEEEEeeehhhh
Confidence 2222335678899999999988764 5688999998641111 1112222 345568999999999999875433
Q ss_pred EEEeCCCCeeEEEEec
Q 007411 558 WFWDWKSCKVFRTLKC 573 (604)
Q Consensus 558 ~iwd~~t~~~~~~l~~ 573 (604)
. +.+|-.+.++++
T Consensus 562 k---~d~GYri~tfqG 574 (698)
T KOG2314|consen 562 K---VDNGYRIFTFQG 574 (698)
T ss_pred c---cccceEEEEeec
Confidence 2 234444444443
No 309
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.53 E-value=2.9e-07 Score=63.08 Aligned_cols=38 Identities=29% Similarity=0.769 Sum_probs=36.5
Q ss_pred ceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEe
Q 007411 304 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWD 342 (604)
Q Consensus 304 ~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd 342 (604)
++++++.+|.+.|++|+|+|+ +.+|++|+.|++|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~-~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPD-GNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETT-SSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecc-cccceeeCCCCEEEEEC
Confidence 578999999999999999999 99999999999999997
No 310
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.48 E-value=0.00011 Score=80.50 Aligned_cols=263 Identities=14% Similarity=0.164 Sum_probs=159.8
Q ss_pred CCEEEEEECCCcEEEEecCCCCeeeEEecCCCC------ce--eeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeC
Q 007411 326 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSK------AV--RDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST 397 (604)
Q Consensus 326 g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~------~V--~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~ 397 (604)
+..++.++.++.|.-.|. .+++.+..+..... .+ ..+... ++..++.++.++.|..+|.++|+.+..+..
T Consensus 61 ~g~vy~~~~~g~l~AlD~-~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~ 138 (488)
T cd00216 61 DGDMYFTTSHSALFALDA-ATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGN 138 (488)
T ss_pred CCEEEEeCCCCcEEEEEC-CCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecC
Confidence 456777888899999998 67777766543322 11 011111 226788888999999999999999998876
Q ss_pred CCcc---eEEEEccCCCCCcEEEEEE---------cCCeEEEEeCCCCceEEEEcCcCC--------------------c
Q 007411 398 GKIP---YVVKLNPDDDKQNILLAGM---------SDKKIVQWDMNTKEITQEYDQHLG--------------------A 445 (604)
Q Consensus 398 ~~~~---~~~~~~~~~~~~~~lvsg~---------~dg~I~iwD~~s~~~~~~~~~h~~--------------------~ 445 (604)
.... ..+...|.-.. .++++++ .++.|+.+|..+|+.+..+..... .
T Consensus 139 ~~~~~~~~~i~ssP~v~~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (488)
T cd00216 139 NDQVPPGYTMTGAPTIVK-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT 217 (488)
T ss_pred CCCcCcceEecCCCEEEC-CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence 5431 11111111111 3455554 368899999999998887754211 0
Q ss_pred e-eEEEEeCCCCEEEEEeCCC------------------cEEEEECCCCeEEEEeecCCCC-----cccEEEEc----CC
Q 007411 446 V-NTITFVDSNRRFVTSSDDK------------------SLRVWEFGIPVVIKYISEPHMH-----SMPSISLH----PN 497 (604)
Q Consensus 446 V-~~i~~sp~~~~l~sgs~Dg------------------~I~iwdl~~~~~~~~~~~~~~~-----~v~~l~~s----p~ 497 (604)
| ....+.+.+..++.++.++ .|.-+|..+++..-........ ......+. -+
T Consensus 218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~ 297 (488)
T cd00216 218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKD 297 (488)
T ss_pred ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccC
Confidence 1 1234455566777777665 6999999998887665432110 10111111 13
Q ss_pred CC---EEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEE------------------cCCCc
Q 007411 498 TN---WLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSG------------------DGEGK 556 (604)
Q Consensus 498 g~---~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sg------------------s~dG~ 556 (604)
+. .+++++.+|.+..+|..++..+........ .++.+| ..++.+ ..+|.
T Consensus 298 g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~--------~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~ 367 (488)
T cd00216 298 GKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQ--------PMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGG 367 (488)
T ss_pred CCeeEEEEEECCCceEEEEECCCCcEeeEeEeecc--------ccccCC--ceEEEccccccccCcccccCCCCCCCceE
Confidence 33 677888899999999999877654332100 123333 223222 24688
Q ss_pred EEEEeCCCCeeEEEEecCC--------CcE--EEEEEecCCCCEEEEEeCCCcEEEeC
Q 007411 557 CWFWDWKSCKVFRTLKCHE--------GVC--IGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 557 I~iwd~~t~~~~~~l~~h~--------~~V--~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
|.-.|..+|+.+....... .+. ..+.. .+.+|+.++.||.|..+|
T Consensus 368 l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~---~g~~v~~g~~dG~l~ald 422 (488)
T cd00216 368 LAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT---AGNLVFAGAADGYFRAFD 422 (488)
T ss_pred EEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe---cCCeEEEECCCCeEEEEE
Confidence 9999999999888776431 111 11222 335788888999988765
No 311
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.47 E-value=7.7e-06 Score=89.88 Aligned_cols=178 Identities=16% Similarity=0.202 Sum_probs=132.8
Q ss_pred cEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEE
Q 007411 414 NILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSIS 493 (604)
Q Consensus 414 ~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~ 493 (604)
..++.|+-...+..+|+++.+..+...-..+.|.-+. .+++.+.+|...|+|.+-|.++.+.++.+. .|.+.|..+.
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~-aHs~siSDfD 224 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFD-AHSGSISDFD 224 (1118)
T ss_pred cceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeee-ccccceeeee
Confidence 4588888888999999999988777755454554444 467899999999999999999999999886 5888887665
Q ss_pred EcCCCCEEEEEEc---------CCeEEEEEcCCceeecccccccCcccccceEEEEEcCC-CCEEEEEcCCCcEEEEeC-
Q 007411 494 LHPNTNWLAAQSL---------DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPD-GRFVMSGDGEGKCWFWDW- 562 (604)
Q Consensus 494 ~sp~g~~l~s~s~---------Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spd-g~~L~sgs~dG~I~iwd~- 562 (604)
+ .|+.|++|+. |..|.|||++.-..+..+....+.. -+.|.|. ...+++.+..|...+-|.
T Consensus 225 v--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~------flrf~Psl~t~~~V~S~sGq~q~vd~~ 296 (1118)
T KOG1275|consen 225 V--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQ------FLRFHPSLTTRLAVTSQSGQFQFVDTA 296 (1118)
T ss_pred c--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCch------hhhhcccccceEEEEecccceeecccc
Confidence 5 6888988874 5668999998876665554433331 2567774 346778888999999983
Q ss_pred --CCCee-EEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEe
Q 007411 563 --KSCKV-FRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 603 (604)
Q Consensus 563 --~t~~~-~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vW 603 (604)
.+... +..+..-...+.++.+++ ++..|+.|..+|.|.+|
T Consensus 297 ~lsNP~~~~~~v~p~~s~i~~fDiSs-n~~alafgd~~g~v~~w 339 (1118)
T KOG1275|consen 297 TLSNPPAGVKMVNPNGSGISAFDISS-NGDALAFGDHEGHVNLW 339 (1118)
T ss_pred ccCCCccceeEEccCCCcceeEEecC-CCceEEEecccCcEeee
Confidence 33211 222222334589999999 78899999999999999
No 312
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.47 E-value=4.8e-07 Score=61.98 Aligned_cols=39 Identities=41% Similarity=0.867 Sum_probs=36.9
Q ss_pred CeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEE
Q 007411 347 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWD 385 (604)
Q Consensus 347 ~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD 385 (604)
++++.++.+|...|++|+|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 367889999999999999999999999999999999997
No 313
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.44 E-value=9.2e-07 Score=87.22 Aligned_cols=150 Identities=15% Similarity=0.239 Sum_probs=114.5
Q ss_pred EEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCC-----cEEEEeeCCCcceEE
Q 007411 330 LSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG-----QVIRTFSTGKIPYVV 404 (604)
Q Consensus 330 ~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~-----~~i~~~~~~~~~~~~ 404 (604)
++.+.+-.|-|-++ .++ ..+.|. ..+.|.++.|...+++++.|+..|.|...|++.+ .+...+-.+....++
T Consensus 228 fs~G~sqqv~L~nv-etg-~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtsl 304 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNV-ETG-HQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSL 304 (425)
T ss_pred ecccccceeEEEEe-ecc-cccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhh
Confidence 55666777888887 333 223333 6678999999998999999999999999999864 455666666666655
Q ss_pred EEccCCCCCcEEEEEEcCCeEEEEeCCCCce---EEEEcCcCCceeE--EEEeCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 007411 405 KLNPDDDKQNILLAGMSDKKIVQWDMNTKEI---TQEYDQHLGAVNT--ITFVDSNRRFVTSSDDKSLRVWEFGIPVVIK 479 (604)
Q Consensus 405 ~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~---~~~~~~h~~~V~~--i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~ 479 (604)
..... .+..|++.+.+|+|.+||++--+. ++.+.+|...-.- +.+.+....++++++|...+||.++.+..+.
T Consensus 305 q~Lq~--s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ 382 (425)
T KOG2695|consen 305 QILQF--SQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLC 382 (425)
T ss_pred hhhcc--ccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceee
Confidence 55442 236789999999999999997766 8899988754433 3445677889999999999999999999888
Q ss_pred EeecC
Q 007411 480 YISEP 484 (604)
Q Consensus 480 ~~~~~ 484 (604)
.+..+
T Consensus 383 tipf~ 387 (425)
T KOG2695|consen 383 TIPFP 387 (425)
T ss_pred ccCCC
Confidence 87543
No 314
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.39 E-value=0.00047 Score=69.09 Aligned_cols=233 Identities=15% Similarity=0.189 Sum_probs=148.3
Q ss_pred EEEEEcCCCCCEEEEEECCCc-EEEEecCCCCeeeEEecCCCCce--eeEEEccCCCEEEEEEC-----CCcEEEEECC-
Q 007411 317 SAIRFFPKYGHLILSAGMDTK-VKIWDVVNSGKCMRTYMGHSKAV--RDISFCNDGTKFLTASY-----DKNIKYWDTE- 387 (604)
Q Consensus 317 ~~l~fsp~~g~~L~sgs~Dg~-I~IWd~~~~~~~~~~~~~h~~~V--~~l~fspdg~~L~s~s~-----Dg~I~vWD~~- 387 (604)
..++.+|..+..++.+-.-|+ ..+||. .++.....+....+.- -.-+||+||++|++.-. .|.|-|||..
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~-~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDC-RTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEc-CCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 356778865777777777665 567888 5666665554322211 13579999999998744 4889999999
Q ss_pred CCcEEEEeeCCC-cceEEEEccCCCCCcEEEEE-----------------EcCCeEEEEeCCCCceEEE--E--cCcCCc
Q 007411 388 TGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAG-----------------MSDKKIVQWDMNTKEITQE--Y--DQHLGA 445 (604)
Q Consensus 388 t~~~i~~~~~~~-~~~~~~~~~~~~~~~~lvsg-----------------~~dg~I~iwD~~s~~~~~~--~--~~h~~~ 445 (604)
+-+.+..+..+. .+.-+.+.+++. .++++- ..+-.|...|..+|+++.. + ..|.-.
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~--tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lS 164 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGE--TLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLS 164 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCC--EEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccc
Confidence 667777776543 355666776542 233321 2345677788889988776 4 347788
Q ss_pred eeEEEEeCCCCEEEEEeCCC-------cEEEEECCCCeEEEEee----cCCCCcccEEEEcCCCCEEEEEE-cCCeEEEE
Q 007411 446 VNTITFVDSNRRFVTSSDDK-------SLRVWEFGIPVVIKYIS----EPHMHSMPSISLHPNTNWLAAQS-LDNQILIY 513 (604)
Q Consensus 446 V~~i~~sp~~~~l~sgs~Dg-------~I~iwdl~~~~~~~~~~----~~~~~~v~~l~~sp~g~~l~s~s-~Dg~I~iw 513 (604)
|..+++.++|..++..-..| .|.+++........... ....+.+-+|++++++.++++.| ..+.+.+|
T Consensus 165 iRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~ 244 (305)
T PF07433_consen 165 IRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVW 244 (305)
T ss_pred eeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEE
Confidence 99999999987666554333 24444433321111111 12345688999999998876655 66889999
Q ss_pred EcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEe
Q 007411 514 STRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 561 (604)
Q Consensus 514 d~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd 561 (604)
|..++..+.... -.-+|.++-.+++ ++++. ..|.+....
T Consensus 245 d~~tg~~~~~~~-------l~D~cGva~~~~~-f~~ss-G~G~~~~~~ 283 (305)
T PF07433_consen 245 DAATGRLLGSVP-------LPDACGVAPTDDG-FLVSS-GQGQLIRLS 283 (305)
T ss_pred ECCCCCEeeccc-------cCceeeeeecCCc-eEEeC-CCccEEEcc
Confidence 998876553322 2346677777777 55444 455544443
No 315
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=0.00011 Score=80.82 Aligned_cols=221 Identities=13% Similarity=0.151 Sum_probs=142.4
Q ss_pred CeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCc-eeeEEEccCCCEEEEEECCCc-----EEEEECCC
Q 007411 315 GVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKA-VRDISFCNDGTKFLTASYDKN-----IKYWDTET 388 (604)
Q Consensus 315 ~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~-V~~l~fspdg~~L~s~s~Dg~-----I~vWD~~t 388 (604)
.|+|+ ++. +..++.|+.+|.|.+.+- .-+.++.++.+... |..+....+..+|++.+.|+. |+||+++.
T Consensus 27 ~isc~--~s~-~~~vvigt~~G~V~~Ln~--s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek 101 (933)
T KOG2114|consen 27 AISCC--SSS-TGSVVIGTADGRVVILNS--SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEK 101 (933)
T ss_pred ceeEE--cCC-CceEEEeeccccEEEecc--cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccc
Confidence 55554 565 789999999999888774 55666888888777 555555445578888877754 88998874
Q ss_pred CcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEE
Q 007411 389 GQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLR 468 (604)
Q Consensus 389 ~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~ 468 (604)
-+ ....+.++. .++++-+. ......++.+++++.+-+.+|+|-.+|.|.
T Consensus 102 ~~------~n~sP~c~~------------------~~ri~~~~-------np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~ 150 (933)
T KOG2114|consen 102 VD------KNNSPQCLY------------------EHRIFTIK-------NPTNPSPASSLAVSEDLKTIVCGFTNGLVI 150 (933)
T ss_pred cC------CCCCcceee------------------eeeeeccC-------CCCCCCcceEEEEEccccEEEEEecCcEEE
Confidence 32 111122210 11111111 112456788899998888999999999999
Q ss_pred EEECCC---CeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCC
Q 007411 469 VWEFGI---PVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDG 545 (604)
Q Consensus 469 iwdl~~---~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg 545 (604)
.+.-+. ......+......+|+.+++..+++.++....-..|.+|.+.++. .....+..+ +..+.|.++++..
T Consensus 151 ~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~--p~~~~ld~~--G~~lnCss~~~~t 226 (933)
T KOG2114|consen 151 CYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT--PSLKVLDNN--GISLNCSSFSDGT 226 (933)
T ss_pred EEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCC--cceeeeccC--CccceeeecCCCC
Confidence 886422 222233344577899999999988875555556789999987543 222223333 4566777787765
Q ss_pred CEEEEEcCCCcEEEEeCCCCeeEEEEe-cCCC
Q 007411 546 RFVMSGDGEGKCWFWDWKSCKVFRTLK-CHEG 576 (604)
Q Consensus 546 ~~L~sgs~dG~I~iwd~~t~~~~~~l~-~h~~ 576 (604)
..+++++.. .|.+|+....++-..+. +|..
T Consensus 227 ~qfIca~~e-~l~fY~sd~~~~cfaf~~g~kk 257 (933)
T KOG2114|consen 227 YQFICAGSE-FLYFYDSDGRGPCFAFEVGEKK 257 (933)
T ss_pred ccEEEecCc-eEEEEcCCCcceeeeecCCCeE
Confidence 535555433 69999987666666666 5554
No 316
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.37 E-value=2.5e-07 Score=100.50 Aligned_cols=215 Identities=13% Similarity=0.250 Sum_probs=147.8
Q ss_pred eeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCC-eEE
Q 007411 348 KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK-KIV 426 (604)
Q Consensus 348 ~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg-~I~ 426 (604)
+..+++..|....+|++|+-+.++|+.|+..|.|+++++.+|........+... +..+-|.-++...|.+.+... ...
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~Sa-vT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSA-VTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccc-cccccccCCcceeeeeccccCchHH
Confidence 455667889999999999999999999999999999999999888777655433 333445444434444444443 577
Q ss_pred EEeCCC-CceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecC---CCCcccEEEEcCCCCEEE
Q 007411 427 QWDMNT-KEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEP---HMHSMPSISLHPNTNWLA 502 (604)
Q Consensus 427 iwD~~s-~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~~v~~l~~sp~g~~l~ 502 (604)
+|++.+ +...++|. .-.++.|+.....-+.|+.-....+||+.+...+.++..+ ....-.+..|+|+..+++
T Consensus 1171 LW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred HhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 899864 34444443 3467888866544455555567899999988776653322 233447788999988776
Q ss_pred EEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEE
Q 007411 503 AQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCE 582 (604)
Q Consensus 503 s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~ 582 (604)
- || .+||.+....+..+..|.... .=.|+|.|.-++.-+. |||+++.++++....-.. ..+.
T Consensus 1247 n---dG--vLWDvR~~~aIh~FD~ft~~~------~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ldq--c~Vt 1308 (1516)
T KOG1832|consen 1247 N---DG--VLWDVRIPEAIHRFDQFTDYG------GGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLDQ--CAVT 1308 (1516)
T ss_pred e---Cc--eeeeeccHHHHhhhhhheecc------cccccCCCceEEeech-----hhhhHHHHHHhcCccccc--eEEE
Confidence 4 44 689998876665555554221 2369999999888763 899999888776654332 3455
Q ss_pred Eec
Q 007411 583 WHP 585 (604)
Q Consensus 583 ~sp 585 (604)
|+.
T Consensus 1309 FNs 1311 (1516)
T KOG1832|consen 1309 FNS 1311 (1516)
T ss_pred ecc
Confidence 655
No 317
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.34 E-value=0.00051 Score=75.41 Aligned_cols=237 Identities=15% Similarity=0.200 Sum_probs=142.4
Q ss_pred CEEEEEECCCcEEEEecCCCCeeeEEecCCCCc-----e-eeEEEccCCCEEEEEE---------CCCcEEEEECCCCcE
Q 007411 327 HLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKA-----V-RDISFCNDGTKFLTAS---------YDKNIKYWDTETGQV 391 (604)
Q Consensus 327 ~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~-----V-~~l~fspdg~~L~s~s---------~Dg~I~vWD~~t~~~ 391 (604)
..++.++.+|.|.-+|. .+++.+..+...... + ....+. +..++.++ .++.|..+|..+|+.
T Consensus 111 ~~V~v~~~~g~v~AlD~-~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 111 RKVFFGTFDGRLVALDA-ETGKQVWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred CeEEEecCCCeEEEEEC-CCCCEeeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCce
Confidence 67888889999999998 678887776543221 1 111222 24455553 468899999999999
Q ss_pred EEEeeCCCc-ceEE---------E-------E-ccC-CCCCcEEEEEEcCC------------------eEEEEeCCCCc
Q 007411 392 IRTFSTGKI-PYVV---------K-------L-NPD-DDKQNILLAGMSDK------------------KIVQWDMNTKE 434 (604)
Q Consensus 392 i~~~~~~~~-~~~~---------~-------~-~~~-~~~~~~lvsg~~dg------------------~I~iwD~~s~~ 434 (604)
+..+..... .... . + .+. .....++++++.++ .|..+|..+|+
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 998865321 1000 0 0 000 01235677777665 79999999999
Q ss_pred eEEEEcCcCC------ceeEEEEe----CCCC---EEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEE
Q 007411 435 ITQEYDQHLG------AVNTITFV----DSNR---RFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWL 501 (604)
Q Consensus 435 ~~~~~~~h~~------~V~~i~~s----p~~~---~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l 501 (604)
.+..++.-.. ......+. -++. .++.++.+|.+...|..+++.+-..... ...++.+| ..+
T Consensus 268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~----~~~~~~~~--~~v 341 (488)
T cd00216 268 VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV----EQPMAYDP--GLV 341 (488)
T ss_pred EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee----ccccccCC--ceE
Confidence 9887742111 11111111 1232 5778888999999999999887665322 11223333 222
Q ss_pred EEE------------------EcCCeEEEEEcCCceeecccccccCccc---ccce--EEEEEcCCCCEEEEEcCCCcEE
Q 007411 502 AAQ------------------SLDNQILIYSTRERFQLNKKKRFAGHIV---AGYA--CQVNFSPDGRFVMSGDGEGKCW 558 (604)
Q Consensus 502 ~s~------------------s~Dg~I~iwd~~~~~~~~~~~~~~~~~~---~~~v--~~l~~spdg~~L~sgs~dG~I~ 558 (604)
+++ ..+|.|.-+|+.++..+-.......... .... ..+. -.+.+|++++.+|.|+
T Consensus 342 yv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~l~ 419 (488)
T cd00216 342 YLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGYFR 419 (488)
T ss_pred EEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceE--ecCCeEEEECCCCeEE
Confidence 222 2356777888877765544332200000 0000 1111 2567899999999999
Q ss_pred EEeCCCCeeEEEEecC
Q 007411 559 FWDWKSCKVFRTLKCH 574 (604)
Q Consensus 559 iwd~~t~~~~~~l~~h 574 (604)
.+|..+|+.+.+++..
T Consensus 420 ald~~tG~~lW~~~~~ 435 (488)
T cd00216 420 AFDATTGKELWKFRTP 435 (488)
T ss_pred EEECCCCceeeEEECC
Confidence 9999999999988753
No 318
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.33 E-value=4.9e-06 Score=80.98 Aligned_cols=238 Identities=19% Similarity=0.370 Sum_probs=151.5
Q ss_pred ccCcceeeccCccccccceeecCCCccccCCCCcccCcceeEEecCCC------------CCeEEEEEcCCCC-CEEEEE
Q 007411 266 VEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHT------------KGVSAIRFFPKYG-HLILSA 332 (604)
Q Consensus 266 ~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~------------~~V~~l~fsp~~g-~~L~sg 332 (604)
+.++..+.++ .|..||.-++...... .|- .+....|++|. ..|..|.|..+++ ..++..
T Consensus 34 fd~tg~Ylat--GDkgGRVvlfer~~s~----~ce--ykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 34 FDETGLYLAT--GDKGGRVVLFEREKSY----GCE--YKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred eccccceEee--cCCCceEEEeeccccc----ccc--hhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4555555554 3455776666544332 121 13445566665 3588999987633 456677
Q ss_pred ECCCcEEEEecCCC------------------Ce-----------------------eeEEe-cCCCCceeeEEEccCCC
Q 007411 333 GMDTKVKIWDVVNS------------------GK-----------------------CMRTY-MGHSKAVRDISFCNDGT 370 (604)
Q Consensus 333 s~Dg~I~IWd~~~~------------------~~-----------------------~~~~~-~~h~~~V~~l~fspdg~ 370 (604)
+.|.+|++|.+++. +. +.+.+ ..|.-.|.++.|+.|..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 78999999998643 10 11112 35777899999999988
Q ss_pred EEEEEECCCcEEEEECCCCcEEE---EeeCCC------cceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEE----
Q 007411 371 KFLTASYDKNIKYWDTETGQVIR---TFSTGK------IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQ---- 437 (604)
Q Consensus 371 ~L~s~s~Dg~I~vWD~~t~~~i~---~~~~~~------~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~---- 437 (604)
.++++. |=.|.+|+++-..... .++... .+....|+|. ..+++...++.|.|++-|+|...+..
T Consensus 186 t~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~--~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 186 TLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPE--MCNVFMYSSSKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred eeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHh--HcceEEEecCCCcEEehhhhhhhhccCchh
Confidence 888775 5789999987433211 111111 1234445553 34678888999999999998542211
Q ss_pred ------------EEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCC-eEEEEeecC-----------CCCc---cc
Q 007411 438 ------------EYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP-VVIKYISEP-----------HMHS---MP 490 (604)
Q Consensus 438 ------------~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~-~~~~~~~~~-----------~~~~---v~ 490 (604)
-+.+-...|..+.|+++|+++++-+. -+|+|||.+.. .+++++... .... -.
T Consensus 263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkF 341 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKF 341 (460)
T ss_pred hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeE
Confidence 11223456888999999999888765 68999999764 455555210 1111 23
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEEc
Q 007411 491 SISLHPNTNWLAAQSLDNQILIYST 515 (604)
Q Consensus 491 ~l~~sp~g~~l~s~s~Dg~I~iwd~ 515 (604)
.+.|+.+.+.+++|+..+..-+|-.
T Consensus 342 eisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 342 EISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred EEEecCCcccccccccccceeeecc
Confidence 4778888899999998888877764
No 319
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.29 E-value=0.00071 Score=76.46 Aligned_cols=144 Identities=15% Similarity=0.249 Sum_probs=105.9
Q ss_pred CCEEEEE-ECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCC----CCcEEEEEEcCCeEEEEeCCCCc--eEEE-Ec
Q 007411 369 GTKFLTA-SYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDD----KQNILLAGMSDKKIVQWDMNTKE--ITQE-YD 440 (604)
Q Consensus 369 g~~L~s~-s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~----~~~~lvsg~~dg~I~iwD~~s~~--~~~~-~~ 440 (604)
.++|+.- .....|.-.|+++|+++..+..+....+..+.|... ...-.+.|-+++.|..||.|-.. ++.. ..
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 3444433 345789999999999999999888776777777532 12347888999999999998642 3321 11
Q ss_pred --CcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEc
Q 007411 441 --QHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYST 515 (604)
Q Consensus 441 --~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~ 515 (604)
......+|++-..+| +||+|+.+|.||+|| +.+...++...+...+|.+|.++.||+||++.+ +..|.+++.
T Consensus 573 ~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd-~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYD-RLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred ccccCCCceEEEecCCc-eEEEEeCCCcEEeec-ccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 133456788777666 899999999999999 444555555556788999999999999998877 556666664
No 320
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.29 E-value=0.00086 Score=64.40 Aligned_cols=257 Identities=14% Similarity=0.177 Sum_probs=134.1
Q ss_pred CCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcceEE-
Q 007411 326 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVV- 404 (604)
Q Consensus 326 g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~- 404 (604)
|++++.|...|.+++-+. +++.....+.....-=......+++.++..++.|++....|..+..++...+.+....+.
T Consensus 63 gdfVV~GCy~g~lYfl~~-~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP 141 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCV-KTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSP 141 (354)
T ss_pred CCEEEEEEccCcEEEEEe-cchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccc
Confidence 678899999999999999 677666655433222223345668999999999999999999999999887766554432
Q ss_pred EEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcC--cCCceeE--EEEeCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 007411 405 KLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ--HLGAVNT--ITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKY 480 (604)
Q Consensus 405 ~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~--h~~~V~~--i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~ 480 (604)
.+.+.+ ..|+++...|.|.--..+.... .++-. ..++|.+ ++. +..+..+.-||.+.-++ ..++.+.+
T Consensus 142 ~i~~g~---~sly~a~t~G~vlavt~~~~~~-~~~w~~~~~~PiF~splcv---~~sv~i~~VdG~l~~f~-~sG~qvwr 213 (354)
T KOG4649|consen 142 VIAPGD---GSLYAAITAGAVLAVTKNPYSS-TEFWAATRFGPIFASPLCV---GSSVIITTVDGVLTSFD-ESGRQVWR 213 (354)
T ss_pred eecCCC---ceEEEEeccceEEEEccCCCCc-ceehhhhcCCccccCceec---cceEEEEEeccEEEEEc-CCCcEEEe
Confidence 223311 3466666667666665554421 11111 1223322 111 23444455566666665 34444333
Q ss_pred eecCCCCcccE-EEE-cCCCCEEEEEEcCCe--------EEEEEcCCceeecccccccCcccccceEEEEEc-C---CCC
Q 007411 481 ISEPHMHSMPS-ISL-HPNTNWLAAQSLDNQ--------ILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS-P---DGR 546 (604)
Q Consensus 481 ~~~~~~~~v~~-l~~-sp~g~~l~s~s~Dg~--------I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s-p---dg~ 546 (604)
.. ..++|.. -+. +|..+.|..+..+.. -.+|..+.+........ +-...+++ | ..+
T Consensus 214 ~~--t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~t~~vy~~--------p~l~F~~h~~~~S~~~ 283 (354)
T KOG4649|consen 214 PA--TKGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSGTTLHVYLS--------PKLRFDLHSPGISYPK 283 (354)
T ss_pred ec--CCCceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCCcEEEEEeC--------cccceeccCCCCcchh
Confidence 22 1222111 011 133333444333322 23344433211110000 00011111 1 145
Q ss_pred EEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEE--------Ee-c--CCCCEEEEEeCCCcEEEeC
Q 007411 547 FVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCE--------WH-P--LEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 547 ~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~--------~s-p--~~~~~l~tgg~DG~I~vWD 604 (604)
+|..++.||++.|.-.+ +.+..+..|.+.+..+. |+ | .+ .+|+.|+.|..|+.||
T Consensus 284 ll~~~s~dgkv~il~~~--~sl~~~~s~~g~lq~~~~~el~~eIFsSPvii~-grl~igcRDdYv~cld 349 (354)
T KOG4649|consen 284 LLRRSSGDGKVMILMTS--KSLAEISSNGGELQNLEAIELSNEIFSSPVIID-GRLLIGCRDDYVRCLD 349 (354)
T ss_pred hhhhhcCCCcEEEEEec--ccccccccCCCccceEEEeecCcccccCCeEEc-cEEEEEEccCeEEEEe
Confidence 67788899998887432 22333444443332222 11 1 02 3678888899999987
No 321
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.26 E-value=0.00023 Score=69.43 Aligned_cols=187 Identities=14% Similarity=0.173 Sum_probs=106.1
Q ss_pred eEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecC-------CCCceeeEEEccC------CCEEEEEECCCcEE
Q 007411 316 VSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMG-------HSKAVRDISFCND------GTKFLTASYDKNIK 382 (604)
Q Consensus 316 V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~-------h~~~V~~l~fspd------g~~L~s~s~Dg~I~ 382 (604)
=..++|||+ +.+||.+...|+|+++|+ .+..+..+.. -..+|..+.|.+- ...|++-.++|.++
T Consensus 46 WRkl~WSpD-~tlLa~a~S~G~i~vfdl--~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~ 122 (282)
T PF15492_consen 46 WRKLAWSPD-CTLLAYAESTGTIRVFDL--MGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLR 122 (282)
T ss_pred heEEEECCC-CcEEEEEcCCCeEEEEec--ccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceee
Confidence 356899999 999999999999999999 3333333332 2356777777652 23577778888888
Q ss_pred EEECCC-----CcEEEEeeC--C--CcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeC
Q 007411 383 YWDTET-----GQVIRTFST--G--KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVD 453 (604)
Q Consensus 383 vWD~~t-----~~~i~~~~~--~--~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp 453 (604)
-+-+.. .+....|.. . +.+..+.+.+ .. ++|++|+.... ..+. -......+++-.+..
T Consensus 123 Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p--~h-~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~ 189 (282)
T PF15492_consen 123 SYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP--KH-RLLLVGGCEQN------QDGM----SKASSCGLTAWRILS 189 (282)
T ss_pred eEEEEcccCCcceeeEEEEecccCCCceeEEEEcC--CC-CEEEEeccCCC------CCcc----ccccccCceEEEEcC
Confidence 777532 233334332 2 2333444444 33 55555554321 0000 001122333333322
Q ss_pred CCCE--EEEEeCCCc------EEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCce
Q 007411 454 SNRR--FVTSSDDKS------LRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF 519 (604)
Q Consensus 454 ~~~~--l~sgs~Dg~------I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~ 519 (604)
+..+ .++...|+. ..+|.+-+...... .......|..|.++|+|..|++...+|.|.+|++.+-.
T Consensus 190 ~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~-~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 190 DSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSR-QGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred CCCcEEEccccCccccccccccceeeccceeeeec-cccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcch
Confidence 2221 112222221 23343322222111 12356779999999999999999999999999987643
No 322
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.25 E-value=0.0018 Score=65.83 Aligned_cols=244 Identities=13% Similarity=0.145 Sum_probs=151.2
Q ss_pred EEEEcCCCCCEEEEEE----------CCCcEEEEecCCCCeeeEEec--C-CC----CceeeEEEccCCCEEEEEEC--C
Q 007411 318 AIRFFPKYGHLILSAG----------MDTKVKIWDVVNSGKCMRTYM--G-HS----KAVRDISFCNDGTKFLTASY--D 378 (604)
Q Consensus 318 ~l~fsp~~g~~L~sgs----------~Dg~I~IWd~~~~~~~~~~~~--~-h~----~~V~~l~fspdg~~L~s~s~--D 378 (604)
.+..+|+ ++.+++++ ..-.|.+||. .+-.+...+. . |. .....++++.+|++++.... -
T Consensus 40 ~~~~spd-gk~~y~a~T~~sR~~rG~RtDvv~~~D~-~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa 117 (342)
T PF06433_consen 40 NVALSPD-GKTIYVAETFYSRGTRGERTDVVEIWDT-QTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPA 117 (342)
T ss_dssp EEEE-TT-SSEEEEEEEEEEETTEEEEEEEEEEEET-TTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSS
T ss_pred ceeECCC-CCEEEEEEEEEeccccccceeEEEEEec-CcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCC
Confidence 3557888 77777653 3456999998 5555544332 1 11 22356788999999887754 4
Q ss_pred CcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCC-CCceEEEEc----CcCCc-eeEEEEe
Q 007411 379 KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN-TKEITQEYD----QHLGA-VNTITFV 452 (604)
Q Consensus 379 g~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~-s~~~~~~~~----~h~~~-V~~i~~s 452 (604)
..|.|-|+..++.+..+....+ ..+.|.+. .-|.+-|.||.+....+. .|+..+... ....+ +..-.+.
T Consensus 118 ~SVtVVDl~~~kvv~ei~~PGC---~~iyP~~~--~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~ 192 (342)
T PF06433_consen 118 TSVTVVDLAAKKVVGEIDTPGC---WLIYPSGN--RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYS 192 (342)
T ss_dssp EEEEEEETTTTEEEEEEEGTSE---EEEEEEET--TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEE
T ss_pred CeEEEEECCCCceeeeecCCCE---EEEEecCC--CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceE
Confidence 6799999999999988876554 44444443 348899999999999887 555543321 11122 2333455
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCeEE--EEeecC---------CCCcccEEEEcCCCCEEEEEEc--------C--CeEE
Q 007411 453 DSNRRFVTSSDDKSLRVWEFGIPVVI--KYISEP---------HMHSMPSISLHPNTNWLAAQSL--------D--NQIL 511 (604)
Q Consensus 453 p~~~~l~sgs~Dg~I~iwdl~~~~~~--~~~~~~---------~~~~v~~l~~sp~g~~l~s~s~--------D--g~I~ 511 (604)
..+..++..+.+|.|+-.|+...... ..+... ..+...-+++++..+.|.+.-. | ..|.
T Consensus 193 ~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVW 272 (342)
T PF06433_consen 193 RDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVW 272 (342)
T ss_dssp TTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEE
T ss_pred CCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEE
Confidence 56667777888999999998765432 222110 1123455788876665555321 1 2488
Q ss_pred EEEcCCceeecccccccCcccccceEEEEEcCCCC-EEEEE-cCCCcEEEEeCCCCeeEEEEecC
Q 007411 512 IYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR-FVMSG-DGEGKCWFWDWKSCKVFRTLKCH 574 (604)
Q Consensus 512 iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~-~L~sg-s~dG~I~iwd~~t~~~~~~l~~h 574 (604)
+||+.+++++.++.. ...+.+|..+.+.+ +|++. ..++.|.+||..+|+.++++..-
T Consensus 273 v~D~~t~krv~Ri~l------~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~l 331 (342)
T PF06433_consen 273 VYDLKTHKRVARIPL------EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQL 331 (342)
T ss_dssp EEETTTTEEEEEEEE------EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---
T ss_pred EEECCCCeEEEEEeC------CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhcc
Confidence 889888877765543 23455788888776 55544 46899999999999999998743
No 323
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.25 E-value=0.0013 Score=63.12 Aligned_cols=186 Identities=10% Similarity=0.071 Sum_probs=111.5
Q ss_pred EcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCc
Q 007411 321 FFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKI 400 (604)
Q Consensus 321 fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~ 400 (604)
..++...+++.|+..+.+.--|. .++..+..-. -...|.+-+.- -|++++.|++.|.+.+.+..+|..++.+..-..
T Consensus 18 V~~dskT~v~igSHs~~~~avd~-~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~ 94 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDP-QSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILET 94 (354)
T ss_pred EecCCceEEEEecCCceEEEecC-CCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhh
Confidence 34554678888898888888888 4565544321 12223322222 467899999999999999999988888876555
Q ss_pred ceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 007411 401 PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKY 480 (604)
Q Consensus 401 ~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~ 480 (604)
+.+-..... .+.++..|+.|+..+..|.++...+...+-..+.-.+-++.+-...|..+...|.|.--..........
T Consensus 95 vk~~a~~d~--~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~ 172 (354)
T KOG4649|consen 95 VKVRAQCDF--DGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEF 172 (354)
T ss_pred hccceEEcC--CCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCCCccee
Confidence 544333322 236899999999999999999988887654444444445555333444444455544433332211111
Q ss_pred eecCCCCcccE--EEEcCCCCEEEEEEcCCeEEEEE
Q 007411 481 ISEPHMHSMPS--ISLHPNTNWLAAQSLDNQILIYS 514 (604)
Q Consensus 481 ~~~~~~~~v~~--l~~sp~g~~l~s~s~Dg~I~iwd 514 (604)
.......++.+ ++. +..+..+.-||.+.-++
T Consensus 173 w~~~~~~PiF~splcv---~~sv~i~~VdG~l~~f~ 205 (354)
T KOG4649|consen 173 WAATRFGPIFASPLCV---GSSVIITTVDGVLTSFD 205 (354)
T ss_pred hhhhcCCccccCceec---cceEEEEEeccEEEEEc
Confidence 11111122211 111 34556666777777776
No 324
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=0.00012 Score=79.93 Aligned_cols=188 Identities=14% Similarity=0.136 Sum_probs=128.8
Q ss_pred CCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceE
Q 007411 357 SKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEIT 436 (604)
Q Consensus 357 ~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~ 436 (604)
...++|++++ ++.|+-|+.+|.|++.+....- ...+.. ++....+.++++|+.||+|.|..+-+.+..
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~~~~~~---------s~~~~~Gey~asCS~DGkv~I~sl~~~~~~ 106 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-KTNFDH---------SSSILEGEYVASCSDDGKVVIGSLFTDDEI 106 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCcc-cccccc---------cccccCCceEEEecCCCcEEEeeccCCccc
Confidence 3456777775 5689999999999999876432 111111 111445689999999999999999888877
Q ss_pred EEEcCcCCceeEEEEeCC-----CCEEEEEeCCCcEEEEECCCCeEE-EEeecCCCCcccEEEEcCCCCEEEEEEcCCeE
Q 007411 437 QEYDQHLGAVNTITFVDS-----NRRFVTSSDDKSLRVWEFGIPVVI-KYISEPHMHSMPSISLHPNTNWLAAQSLDNQI 510 (604)
Q Consensus 437 ~~~~~h~~~V~~i~~sp~-----~~~l~sgs~Dg~I~iwdl~~~~~~-~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I 510 (604)
..+. ...++.+++++|+ .+.+++|+.-| +.++.-+-.... ........++|.++.|. |+++|-++.+| |
T Consensus 107 ~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v 181 (846)
T KOG2066|consen 107 TQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-V 181 (846)
T ss_pred eeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-c
Confidence 7664 5678999999997 56899999988 777764321111 11233467889999995 78888887666 9
Q ss_pred EEEEcCCceeecccccccCc-ccccceEEEEEcCCCCEEEEEcCCCcEEEEeCC
Q 007411 511 LIYSTRERFQLNKKKRFAGH-IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 563 (604)
Q Consensus 511 ~iwd~~~~~~~~~~~~~~~~-~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~ 563 (604)
++||+..+..+..+..-... ......+.+.|.++.++ +.|=.| +|+|..++
T Consensus 182 ~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~L-VIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 182 KVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRL-VIGWGD-SVKICSIK 233 (846)
T ss_pred EEEeccccceeeccCCCCCCCCcccCCCceEecCCCeE-EEecCC-eEEEEEEe
Confidence 99999887766544332221 11234456888877654 444333 68887776
No 325
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.12 E-value=7.5e-07 Score=94.29 Aligned_cols=198 Identities=17% Similarity=0.252 Sum_probs=129.6
Q ss_pred CCCeEEEEEcCCCC-CEEEEEECCCcEEEEecCCCCee-eEEecCCCCceeeEEEcc-CCCEEEEEE----CCCcEEEEE
Q 007411 313 TKGVSAIRFFPKYG-HLILSAGMDTKVKIWDVVNSGKC-MRTYMGHSKAVRDISFCN-DGTKFLTAS----YDKNIKYWD 385 (604)
Q Consensus 313 ~~~V~~l~fsp~~g-~~L~sgs~Dg~I~IWd~~~~~~~-~~~~~~h~~~V~~l~fsp-dg~~L~s~s----~Dg~I~vWD 385 (604)
+..+.|++++-+.. .+++.|..+|.|-+-.+.+.... .....+|....++++|++ |.+.|+.|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 45577888776544 67889999999999988544433 345567888999999999 566666662 357899999
Q ss_pred CCCC--cEEE--EeeC--CCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCC-ceEEEEcCcCCceeEEEEeC-CCCE
Q 007411 386 TETG--QVIR--TFST--GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITFVD-SNRR 457 (604)
Q Consensus 386 ~~t~--~~i~--~~~~--~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~-~~~~~~~~h~~~V~~i~~sp-~~~~ 457 (604)
+.++ .+.. .|.. .....++++. ....++++|.....+.++|++.. .....+ ....+..+.+.| .+++
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwl---rd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY 210 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWL---RDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNY 210 (783)
T ss_pred cccccCCCccccccccccccCccccccc---cCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCc
Confidence 9887 2221 1222 1122244444 34478999999999999999843 222222 344567788888 6667
Q ss_pred EEEEeCCCcEEEEE-CCCCe-EEEEee---cCCCCcccEEEEcCCC-CEEEEEEc-CCeEEEEEcC
Q 007411 458 FVTSSDDKSLRVWE-FGIPV-VIKYIS---EPHMHSMPSISLHPNT-NWLAAQSL-DNQILIYSTR 516 (604)
Q Consensus 458 l~sgs~Dg~I~iwd-l~~~~-~~~~~~---~~~~~~v~~l~~sp~g-~~l~s~s~-Dg~I~iwd~~ 516 (604)
+++-. ||.|.+|| .+.-+ ++..+. ......+..++|+|.. ..+++.+. .++|++|++.
T Consensus 211 ~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 211 FCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred eeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 76665 99999999 33322 222221 1122348889999963 34555554 4789999875
No 326
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.11 E-value=5.8e-05 Score=82.38 Aligned_cols=257 Identities=10% Similarity=0.077 Sum_probs=144.6
Q ss_pred eEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEe
Q 007411 316 VSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTF 395 (604)
Q Consensus 316 V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~ 395 (604)
+++++|+|. .-+|++|-.-|.+.+|.. +..+.......|..+|..+.||++|..++++..-|.|.+|....-..++..
T Consensus 62 atSLCWHpe-~~vLa~gwe~g~~~v~~~-~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~ 139 (1416)
T KOG3617|consen 62 ATSLCWHPE-EFVLAQGWEMGVSDVQKT-NTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTS 139 (1416)
T ss_pred hhhhccChH-HHHHhhccccceeEEEec-CCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccc
Confidence 567999998 788999999999999998 555555556689999999999999999999999999999987633222221
Q ss_pred -----eCCCcc--eEEEEccCCCCC---cEEEEEEcCCeEE-EEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCC
Q 007411 396 -----STGKIP--YVVKLNPDDDKQ---NILLAGMSDKKIV-QWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDD 464 (604)
Q Consensus 396 -----~~~~~~--~~~~~~~~~~~~---~~lvsg~~dg~I~-iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~D 464 (604)
..+... +|..+.+..... ...++.+.+..+- .++.+........ .|. -.|+|..|+.++.+
T Consensus 140 ~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~-~ks-------gv~~g~~F~~~~~~ 211 (1416)
T KOG3617|consen 140 NIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSD-EKS-------GVPKGTEFLFAGKS 211 (1416)
T ss_pred hhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccc-ccc-------CCCCCcEEEEEcCC
Confidence 112222 233333331110 1122333333222 3332211111111 111 13677888888899
Q ss_pred CcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCC-ce---------------e--------
Q 007411 465 KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE-RF---------------Q-------- 520 (604)
Q Consensus 465 g~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~-~~---------------~-------- 520 (604)
|+|+..|-... +....... +...+-|.+....+++.-.+-++.+|-... +. +
T Consensus 212 GtVyyvdq~g~-~~~V~k~d---S~vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sE 287 (1416)
T KOG3617|consen 212 GTVYYVDQNGR-QRTVHKLD---SEVQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSE 287 (1416)
T ss_pred ceEEEEcCCCc-EEEEEEcc---chHHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCcccccc
Confidence 99888774322 22111110 111222333222222222222222221110 00 0
Q ss_pred ---ecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCC-C------CeeEEEEec---CCCcEEEEEEecC
Q 007411 521 ---LNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK-S------CKVFRTLKC---HEGVCIGCEWHPL 586 (604)
Q Consensus 521 ---~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~-t------~~~~~~l~~---h~~~V~~v~~sp~ 586 (604)
+.....-.+......+.+++++..+..|+.|...|++.+|--. . +.-...+.+ -.+.|+.|.|.|.
T Consensus 288 ssGvLr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~ 366 (1416)
T KOG3617|consen 288 SSGVLRKSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPI 366 (1416)
T ss_pred ccccccCCcchhhhcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccc
Confidence 0000111122234567889999999999999999999999532 2 123444443 3468999999983
No 327
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.11 E-value=0.00097 Score=72.83 Aligned_cols=206 Identities=11% Similarity=0.102 Sum_probs=122.1
Q ss_pred CCCEEEEEEC-CCcEEEEECCCCcEEEEeeCC--------------CcceEEEE----ccCCCCCcEE-EEEEcCCeEEE
Q 007411 368 DGTKFLTASY-DKNIKYWDTETGQVIRTFSTG--------------KIPYVVKL----NPDDDKQNIL-LAGMSDKKIVQ 427 (604)
Q Consensus 368 dg~~L~s~s~-Dg~I~vWD~~t~~~i~~~~~~--------------~~~~~~~~----~~~~~~~~~l-vsg~~dg~I~i 427 (604)
||++|+.-.. ...|...++...++-+.+..+ ...++++- .|.+.++..+ ...-..+.+.+
T Consensus 140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSv 219 (635)
T PRK02888 140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTA 219 (635)
T ss_pred ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEE
Confidence 6777776653 456666676665554433221 11122211 1112222222 23334567778
Q ss_pred EeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEe----------------------------------------CCCcE
Q 007411 428 WDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSS----------------------------------------DDKSL 467 (604)
Q Consensus 428 wD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs----------------------------------------~Dg~I 467 (604)
+|..+.+....+.- .+....+.+++++.++++++ .++.|
T Consensus 220 ID~etmeV~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V 298 (635)
T PRK02888 220 VDAETMEVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKV 298 (635)
T ss_pred EECccceEEEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEE
Confidence 88888776666542 22345567777777776664 12457
Q ss_pred EEEECCC-----CeEEEEeecCCCCcccEEEEcCCCCEEEEEE-cCCeEEEEEcCCceeec-----ccccccCc-ccccc
Q 007411 468 RVWEFGI-----PVVIKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLN-----KKKRFAGH-IVAGY 535 (604)
Q Consensus 468 ~iwdl~~-----~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s-~Dg~I~iwd~~~~~~~~-----~~~~~~~~-~~~~~ 535 (604)
.+.|..+ ...+.++. -......+.++|||+++++++ .+++|.|+|+....... ......+. .....
T Consensus 299 ~VID~~t~~~~~~~v~~yIP--VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlG 376 (635)
T PRK02888 299 PVVDGRKAANAGSALTRYVP--VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLG 376 (635)
T ss_pred EEEECCccccCCcceEEEEE--CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCC
Confidence 8888777 45555553 455678899999999887766 58999999997643211 00000000 01112
Q ss_pred eEEEEEcCCCCEEEEEcCCCcEEEEeCCC----------CeeEEEEecCCC
Q 007411 536 ACQVNFSPDGRFVMSGDGEGKCWFWDWKS----------CKVFRTLKCHEG 576 (604)
Q Consensus 536 v~~l~~spdg~~L~sgs~dG~I~iwd~~t----------~~~~~~l~~h~~ 576 (604)
....+|.++|....+-.-|..|..|++.. ...+..+..|-.
T Consensus 377 PLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~ 427 (635)
T PRK02888 377 PLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQ 427 (635)
T ss_pred cceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCc
Confidence 23578999999888888999999999876 345555555543
No 328
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.08 E-value=0.0057 Score=61.70 Aligned_cols=231 Identities=12% Similarity=0.160 Sum_probs=132.8
Q ss_pred CCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEe----------
Q 007411 326 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTF---------- 395 (604)
Q Consensus 326 g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~---------- 395 (604)
++.|+.|..+| +.++++.......+.. +...|..+...++-+.|++-+ |+.|.++++..-......
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~ 82 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS 82 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence 78899999998 8899883333333333 233499999999877777665 499999998765444311
Q ss_pred ---eCCCcceEEEEc-cCCCCCcEEEEEEcCCeEEEEeCCCC-----ceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCc
Q 007411 396 ---STGKIPYVVKLN-PDDDKQNILLAGMSDKKIVQWDMNTK-----EITQEYDQHLGAVNTITFVDSNRRFVTSSDDKS 466 (604)
Q Consensus 396 ---~~~~~~~~~~~~-~~~~~~~~lvsg~~dg~I~iwD~~s~-----~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~ 466 (604)
.......+..+. .....+...++......|.+|..... ....++. -...+.+++|. ++.|+.|..+ .
T Consensus 83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~-~ 158 (275)
T PF00780_consen 83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSK-G 158 (275)
T ss_pred ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCC-c
Confidence 112222333444 11222233444445558888877553 3445553 44788999998 5577777654 4
Q ss_pred EEEEECCCCeEEEEeecCCC----------CcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeec-ccccccCcccccc
Q 007411 467 LRVWEFGIPVVIKYISEPHM----------HSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN-KKKRFAGHIVAGY 535 (604)
Q Consensus 467 I~iwdl~~~~~~~~~~~~~~----------~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~-~~~~~~~~~~~~~ 535 (604)
..+.|+.++........... .....+.-.+++.+|++. +..-.+.+... .... ..-.+. ..
T Consensus 159 f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~--~~~g~fv~~~G-~~~r~~~i~W~-----~~ 230 (275)
T PF00780_consen 159 FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY--DNIGVFVNKNG-EPSRKSTIQWS-----SA 230 (275)
T ss_pred eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe--cceEEEEcCCC-CcCcccEEEcC-----Cc
Confidence 88889986655433321111 111222223345555542 33334444433 2221 111111 22
Q ss_pred eEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCC
Q 007411 536 ACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHE 575 (604)
Q Consensus 536 v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~ 575 (604)
...+++ ...||++...+ .|.||++.++++++++....
T Consensus 231 p~~~~~--~~pyli~~~~~-~iEV~~~~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 231 PQSVAY--SSPYLIAFSSN-SIEVRSLETGELVQTIPLPN 267 (275)
T ss_pred hhEEEE--ECCEEEEECCC-EEEEEECcCCcEEEEEECCC
Confidence 334455 34588777665 59999999999999887543
No 329
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.07 E-value=0.00017 Score=79.27 Aligned_cols=188 Identities=10% Similarity=0.203 Sum_probs=124.5
Q ss_pred CcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCc-eeEEEEeCCCCEEEEEeCCC-----cEEEEECCC------CeEE--
Q 007411 413 QNILLAGMSDKKIVQWDMNTKEITQEYDQHLGA-VNTITFVDSNRRFVTSSDDK-----SLRVWEFGI------PVVI-- 478 (604)
Q Consensus 413 ~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~-V~~i~~sp~~~~l~sgs~Dg-----~I~iwdl~~------~~~~-- 478 (604)
+..++.|+.+|.|.+++-. -+.++.+..+... |..+.......+|++.+.|+ .|+||++.. +.++
T Consensus 35 ~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~ 113 (933)
T KOG2114|consen 35 TGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYE 113 (933)
T ss_pred CceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeee
Confidence 3579999999999988743 3444667777666 55555544556777777665 489999853 3333
Q ss_pred -EEee--cC-CCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCC
Q 007411 479 -KYIS--EP-HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE 554 (604)
Q Consensus 479 -~~~~--~~-~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~d 554 (604)
+... .+ ...++.+++++.+-+.+|+|-.+|.|.++.-.-.... ..+....|....+|+.+++..++..++-....
T Consensus 114 ~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDr-gsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt 192 (933)
T KOG2114|consen 114 HRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDR-GSRQDYSHRGKEPITGLALRSDGKSVLFVATT 192 (933)
T ss_pred eeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcc-ccceeeeccCCCCceeeEEecCCceeEEEEec
Confidence 1111 12 3567889999999999999999999999852211000 11222334456889999999999884444455
Q ss_pred CcEEEEeCCCCee-EEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007411 555 GKCWFWDWKSCKV-FRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 555 G~I~iwd~~t~~~-~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
..|.+|.+....+ ...+..|+..+.|..+++ ....+++|+. ..|.+||
T Consensus 193 ~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~-~t~qfIca~~-e~l~fY~ 241 (933)
T KOG2114|consen 193 EQVMLYSLSGRTPSLKVLDNNGISLNCSSFSD-GTYQFICAGS-EFLYFYD 241 (933)
T ss_pred ceeEEEEecCCCcceeeeccCCccceeeecCC-CCccEEEecC-ceEEEEc
Confidence 6799999874332 555777888899999988 4444555553 3566654
No 330
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=0.011 Score=62.72 Aligned_cols=262 Identities=15% Similarity=0.172 Sum_probs=172.7
Q ss_pred CeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEE-EEEECCCcEEEEECCCCcEEE
Q 007411 315 GVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKF-LTASYDKNIKYWDTETGQVIR 393 (604)
Q Consensus 315 ~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L-~s~s~Dg~I~vWD~~t~~~i~ 393 (604)
....+...|.+....++-.....+.+.+.. ..........-...-..++.++.+..+ ++...+..|.+.|+.+.....
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~ 110 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLG 110 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc-cceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceee
Confidence 455666777732443333333355555542 222222111111334577888887744 455556899999999999999
Q ss_pred EeeCCCcceEEEEccCCCCCcEEEEEE--cCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEe-CCCcEEEE
Q 007411 394 TFSTGKIPYVVKLNPDDDKQNILLAGM--SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSS-DDKSLRVW 470 (604)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~lvsg~--~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs-~Dg~I~iw 470 (604)
....+..+..+.+.+... .+.++-. .++.+.+.|..++..+.....-..+ ..+.+.|++..++.+. .++.|.+.
T Consensus 111 ~~~vG~~P~~~~~~~~~~--~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi 187 (381)
T COG3391 111 SIPVGLGPVGLAVDPDGK--YVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVI 187 (381)
T ss_pred EeeeccCCceEEECCCCC--EEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEE
Confidence 998888888888888653 4555555 4799999999999888875544344 8899999999666554 78999999
Q ss_pred ECCCCeEEEEee----cCCCCcccEEEEcCCCCEEEEEEcC---CeEEEEEcCCceeecccccccCcccccceEEEEEcC
Q 007411 471 EFGIPVVIKYIS----EPHMHSMPSISLHPNTNWLAAQSLD---NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP 543 (604)
Q Consensus 471 dl~~~~~~~~~~----~~~~~~v~~l~~sp~g~~l~s~s~D---g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp 543 (604)
|........ -. .........+.+.|++.++.+.... +.+...|..++........... . ....+.++|
T Consensus 188 ~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~---~-~~~~v~~~p 262 (381)
T COG3391 188 DTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGS---G-APRGVAVDP 262 (381)
T ss_pred eCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccccc---C-CCCceeECC
Confidence 977665553 11 1233345678999999977666544 4888998877654432111111 1 233588999
Q ss_pred CCCEEEEEcC-CCcEEEEeCCCCeeEEEEecCCC---cEEEEEEec
Q 007411 544 DGRFVMSGDG-EGKCWFWDWKSCKVFRTLKCHEG---VCIGCEWHP 585 (604)
Q Consensus 544 dg~~L~sgs~-dG~I~iwd~~t~~~~~~l~~h~~---~V~~v~~sp 585 (604)
+|.++.+... .+.+.+.|..+......+..... .+..+++.+
T Consensus 263 ~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~ 308 (381)
T COG3391 263 AGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISP 308 (381)
T ss_pred CCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceecccee
Confidence 9999988854 48999999998888777654332 345555554
No 331
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.05 E-value=0.003 Score=64.14 Aligned_cols=259 Identities=17% Similarity=0.173 Sum_probs=153.1
Q ss_pred CcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEEC----------CCcEEEEECCCCcEEEEeeCCCcce---
Q 007411 336 TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASY----------DKNIKYWDTETGQVIRTFSTGKIPY--- 402 (604)
Q Consensus 336 g~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~----------Dg~I~vWD~~t~~~i~~~~~~~~~~--- 402 (604)
+++.|.|. ..++.+-.+.. +-.-.+..+|+++.+++++. .-.|.+||..+-.....+..+..+.
T Consensus 17 ~rv~viD~-d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~ 93 (342)
T PF06433_consen 17 SRVYVIDA-DSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQV 93 (342)
T ss_dssp EEEEEEET-TTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--B
T ss_pred ceEEEEEC-CCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhee
Confidence 47899998 67777666543 22334678999999887642 2369999999998888765543311
Q ss_pred -----EEEEccCCCCCcEEEEE--EcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECC-C
Q 007411 403 -----VVKLNPDDDKQNILLAG--MSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFG-I 474 (604)
Q Consensus 403 -----~~~~~~~~~~~~~lvsg--~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~-~ 474 (604)
...++.++ .++++. +--..|.+.|+..++.+.++... + +..+--.. ++.|.+-|.||++.-..+. .
T Consensus 94 ~~~~~~~~ls~dg---k~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P-G-C~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~ 167 (342)
T PF06433_consen 94 VPYKNMFALSADG---KFLYVQNFTPATSVTVVDLAAKKVVGEIDTP-G-CWLIYPSG-NRGFSMLCGDGSLLTVTLDAD 167 (342)
T ss_dssp S--GGGEEE-TTS---SEEEEEEESSSEEEEEEETTTTEEEEEEEGT-S-EEEEEEEE-TTEEEEEETTSCEEEEEETST
T ss_pred cccccceEEccCC---cEEEEEccCCCCeEEEEECCCCceeeeecCC-C-EEEEEecC-CCceEEEecCCceEEEEECCC
Confidence 22333322 233332 23456777888888887776532 2 22222222 3568888899999999987 3
Q ss_pred CeEEEEe---ecCCCCc-ccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeec--cccccc-----CcccccceEEEEEcC
Q 007411 475 PVVIKYI---SEPHMHS-MPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN--KKKRFA-----GHIVAGYACQVNFSP 543 (604)
Q Consensus 475 ~~~~~~~---~~~~~~~-v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~--~~~~~~-----~~~~~~~v~~l~~sp 543 (604)
++..... ..+...+ +..-.+...+..++..+.+|.|+-.|+....... ....+. ..-..+.-..+++++
T Consensus 168 Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~ 247 (342)
T PF06433_consen 168 GKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHA 247 (342)
T ss_dssp SSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEET
T ss_pred CCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeecc
Confidence 3333221 1222222 2233455566667778899999998886543111 111010 000112222378887
Q ss_pred CCCEEEEEc---CCC-------cEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEe-CCCcEEEeC
Q 007411 544 DGRFVMSGD---GEG-------KCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCG-WDGLIKYWD 604 (604)
Q Consensus 544 dg~~L~sgs---~dG-------~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg-~DG~I~vWD 604 (604)
..+.|++-- .+| .|+++|+.+++.+.++.. ..++.++..+.++..+|++.+ .++.|.|||
T Consensus 248 ~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D 318 (342)
T PF06433_consen 248 ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYD 318 (342)
T ss_dssp TTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred ccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence 665555421 122 488999999999999984 235779999997777887654 578999987
No 332
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.04 E-value=0.016 Score=60.12 Aligned_cols=273 Identities=12% Similarity=0.133 Sum_probs=134.1
Q ss_pred EEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCC-CceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCC
Q 007411 320 RFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHS-KAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG 398 (604)
Q Consensus 320 ~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~-~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~ 398 (604)
+|.+++.++|+++..||.-.+|-+.-....+..+..+. .......++++++.++-......|+-.|+.+.+....+...
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 46778556777777777766665433444555555443 33446778898888877666779999999998765555444
Q ss_pred Ccce-EEEEccCCCCCcEEEEEE-----------------------cCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCC
Q 007411 399 KIPY-VVKLNPDDDKQNILLAGM-----------------------SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS 454 (604)
Q Consensus 399 ~~~~-~~~~~~~~~~~~~lvsg~-----------------------~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~ 454 (604)
..-. ...+..+.+. .. ++|. ....|.-.|+.+|+....+. -...+..+.|+|.
T Consensus 122 ~~~~g~gt~v~n~d~-t~-~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~ 198 (386)
T PF14583_consen 122 DDWKGYGTWVANSDC-TK-LVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPT 198 (386)
T ss_dssp TTEEEEEEEEE-TTS-SE-EEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETT
T ss_pred cccccccceeeCCCc-cE-EEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCC
Confidence 3322 2344333332 22 2221 13457777888887655553 5667889999997
Q ss_pred CCEEEEEeCCC-----cEEEEECCCC-eEEEEeec-CCCCcccEEEEcCCCCEEEEEEc-----CCeEEEEEcCCceeec
Q 007411 455 NRRFVTSSDDK-----SLRVWEFGIP-VVIKYISE-PHMHSMPSISLHPNTNWLAAQSL-----DNQILIYSTRERFQLN 522 (604)
Q Consensus 455 ~~~l~sgs~Dg-----~I~iwdl~~~-~~~~~~~~-~~~~~v~~l~~sp~g~~l~s~s~-----Dg~I~iwd~~~~~~~~ 522 (604)
...+++=+..| .-|||-++.. ...+.+.. .....+..=-|.|+|..|.--+. +..|.-+++.+.....
T Consensus 199 dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~ 278 (386)
T PF14583_consen 199 DPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRR 278 (386)
T ss_dssp EEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEE
T ss_pred CCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceE
Confidence 76666554333 2366665432 22222221 12233444568899987665432 3345556666543321
Q ss_pred ccccccCcccccceEEEEEcCCCCEEEEEcCCC----------------cEEEEeCCCCeeEEEEecCC----------C
Q 007411 523 KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG----------------KCWFWDWKSCKVFRTLKCHE----------G 576 (604)
Q Consensus 523 ~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG----------------~I~iwd~~t~~~~~~l~~h~----------~ 576 (604)
... ......+..++||++++.=+.|. .|+++++..+...... .|. .
T Consensus 279 -~~~------~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~-~h~~sw~v~~~~~q 350 (386)
T PF14583_consen 279 -LME------MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLA-RHDTSWKVLDGDRQ 350 (386)
T ss_dssp -EEE------E-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEE-E-------BTTBSS
T ss_pred -EEe------CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeee-eccCcceeecCCCc
Confidence 111 11233567788998887533331 4667888776653221 121 1
Q ss_pred -cEEEEEEecCCCCEEEEEeCCCcEEEe
Q 007411 577 -VCIGCEWHPLEQSKVATCGWDGLIKYW 603 (604)
Q Consensus 577 -~V~~v~~sp~~~~~l~tgg~DG~I~vW 603 (604)
.=....|+|++..+|++....|...||
T Consensus 351 ~~hPhp~FSPDgk~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 351 VTHPHPSFSPDGKWVLFRSDMEGPPAVY 378 (386)
T ss_dssp TT----EE-TTSSEEEEEE-TTSS-EEE
T ss_pred cCCCCCccCCCCCEEEEECCCCCCccEE
Confidence 124578999777778888888887765
No 333
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.04 E-value=0.007 Score=66.89 Aligned_cols=273 Identities=16% Similarity=0.164 Sum_probs=158.6
Q ss_pred CCEEEEEECCCcEEEEecCCCCeeeEEecCCC-Ccee----------eEEEccCCCEEEEEECCCcEEEEECCCCcEEEE
Q 007411 326 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHS-KAVR----------DISFCNDGTKFLTASYDKNIKYWDTETGQVIRT 394 (604)
Q Consensus 326 g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~-~~V~----------~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~ 394 (604)
+..|+.++.++.|.-.|. .+++.+..+.... ..+. .+++ .+..++.++.|+.|...|..+|+.+..
T Consensus 69 ~g~vyv~s~~g~v~AlDa-~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~ 145 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDA-KTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWS 145 (527)
T ss_pred CCEEEEECCCCcEEEEEC-CCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEee
Confidence 457777777888888898 6777777664311 1111 1222 235677888899999999999999988
Q ss_pred eeCCCcc--eEEEEccCCCCCcEEEEEEc------CCeEEEEeCCCCceEEEEcCcCC----------------------
Q 007411 395 FSTGKIP--YVVKLNPDDDKQNILLAGMS------DKKIVQWDMNTKEITQEYDQHLG---------------------- 444 (604)
Q Consensus 395 ~~~~~~~--~~~~~~~~~~~~~~lvsg~~------dg~I~iwD~~s~~~~~~~~~h~~---------------------- 444 (604)
+...... ..+...|.-.+ ..++++.. +|.|+.+|.++|+.+..+..-..
T Consensus 146 ~~~~~~~~~~~~tssP~v~~-g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~ 224 (527)
T TIGR03075 146 KKNGDYKAGYTITAAPLVVK-GKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWP 224 (527)
T ss_pred cccccccccccccCCcEEEC-CEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCC
Confidence 7643221 11111111112 24555543 68999999999998876532111
Q ss_pred ---------ce-eEEEEeCCCCEEEEEeCC-----C-----------cEEEEECCCCeEEEEeecCCC--------Cccc
Q 007411 445 ---------AV-NTITFVDSNRRFVTSSDD-----K-----------SLRVWEFGIPVVIKYISEPHM--------HSMP 490 (604)
Q Consensus 445 ---------~V-~~i~~sp~~~~l~sgs~D-----g-----------~I~iwdl~~~~~~~~~~~~~~--------~~v~ 490 (604)
.+ ..+++.+...+++.+..+ + +|.-.|+++++..-.+...+. ....
T Consensus 225 ~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~ 304 (527)
T TIGR03075 225 GDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMI 304 (527)
T ss_pred CCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcE
Confidence 11 134566666666655422 2 577778888877665543211 1112
Q ss_pred EEEEcCCCC---EEEEEEcCCeEEEEEcCCceeecccc-----cc----c---Cc-------------ccccc-------
Q 007411 491 SISLHPNTN---WLAAQSLDNQILIYSTRERFQLNKKK-----RF----A---GH-------------IVAGY------- 535 (604)
Q Consensus 491 ~l~~sp~g~---~l~s~s~Dg~I~iwd~~~~~~~~~~~-----~~----~---~~-------------~~~~~------- 535 (604)
-+.+..+|+ .++.+..+|.++++|..+++.+...+ .+ . +. .....
T Consensus 305 l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~ 384 (527)
T TIGR03075 305 LFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFL 384 (527)
T ss_pred EEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECCCCc
Confidence 222334665 78889999999999998876642100 00 0 00 00000
Q ss_pred ----eEEEEEcCCCCEEEEEcCC---------------------------------CcEEEEeCCCCeeEEEEecCCCcE
Q 007411 536 ----ACQVNFSPDGRFVMSGDGE---------------------------------GKCWFWDWKSCKVFRTLKCHEGVC 578 (604)
Q Consensus 536 ----v~~l~~spdg~~L~sgs~d---------------------------------G~I~iwd~~t~~~~~~l~~h~~~V 578 (604)
-..++++|+..+++....+ |.|.-+|+.+++.+...+......
T Consensus 385 Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~~ 464 (527)
T TIGR03075 385 GGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKEDFPLW 464 (527)
T ss_pred CCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEecCCCCCC
Confidence 0125666666555543322 568888999998888776432212
Q ss_pred EEEEEecCCCCEEEEEeCCCcEEEeC
Q 007411 579 IGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 579 ~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
.+.... .+.+++.++.||.++.+|
T Consensus 465 ~~~l~t--~g~lvf~g~~~G~l~a~D 488 (527)
T TIGR03075 465 GGVLAT--AGDLVFYGTLEGYFKAFD 488 (527)
T ss_pred CcceEE--CCcEEEEECCCCeEEEEE
Confidence 222122 334777788899999886
No 334
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=3.3e-05 Score=78.88 Aligned_cols=212 Identities=12% Similarity=0.142 Sum_probs=135.9
Q ss_pred CCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeC--CCc--ceEEEEccCCCCCcEEEEEEc-CCeEEEEeC
Q 007411 356 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST--GKI--PYVVKLNPDDDKQNILLAGMS-DKKIVQWDM 430 (604)
Q Consensus 356 h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~--~~~--~~~~~~~~~~~~~~~lvsg~~-dg~I~iwD~ 430 (604)
|...|+.+.-. -.+++++++.||.++.|--..-..+..... .+. ...++.+. ++.++.+++. |..++++|+
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~---dg~L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY---DGWLFRSVEDPDHSVKVFDV 83 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc---cceeEeeccCcccceeEEEe
Confidence 77777766544 457999999999999997543222222111 111 11222232 2356777666 999999998
Q ss_pred CCCceEEEEc--CcCCceeEEEEeCCC--CEEEEEeCCCcEEEEECCCCe-EEEEeecCCCCcccEEEEcCCCCEEEEEE
Q 007411 431 NTKEITQEYD--QHLGAVNTITFVDSN--RRFVTSSDDKSLRVWEFGIPV-VIKYISEPHMHSMPSISLHPNTNWLAAQS 505 (604)
Q Consensus 431 ~s~~~~~~~~--~h~~~V~~i~~sp~~--~~l~sgs~Dg~I~iwdl~~~~-~~~~~~~~~~~~v~~l~~sp~g~~l~s~s 505 (604)
.+-..+.-++ --.+.+.++.-..+. ..-++.-.++.+.|+|-.... .......-|..+|.++.+.+.+..+++..
T Consensus 84 En~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD 163 (558)
T KOG0882|consen 84 ENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSID 163 (558)
T ss_pred eccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecc
Confidence 7655443222 122222222211111 122334467899999976554 44455556999999999999999999999
Q ss_pred cCCeEEEEEcCCceeeccc----------ccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEE
Q 007411 506 LDNQILIYSTRERFQLNKK----------KRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTL 571 (604)
Q Consensus 506 ~Dg~I~iwd~~~~~~~~~~----------~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l 571 (604)
..|.|.-|......+.... ..+.-........++.|+|+|..+.+-+.|..|++++.++|++++.+
T Consensus 164 ~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 164 ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred ccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence 9999999988642111110 00111122455678999999999999999999999999998866544
No 335
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.00 E-value=0.00072 Score=73.82 Aligned_cols=182 Identities=12% Similarity=0.085 Sum_probs=116.0
Q ss_pred EcCCCCCEE-EEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCC
Q 007411 321 FFPKYGHLI-LSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK 399 (604)
Q Consensus 321 fsp~~g~~L-~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~ 399 (604)
+.|+ |+.+ .+.-..+.+.+.|. .+.+...++.-- +....+.++++|.++++++++ .+.+..+..+....
T Consensus 200 lpnD-Gk~l~~~~ey~~~vSvID~-etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyN-------sE~G~tl~em~a~e 269 (635)
T PRK02888 200 LPND-GKDLDDPKKYRSLFTAVDA-ETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYN-------SEEGVTLAEMMAAE 269 (635)
T ss_pred cCCC-CCEeecccceeEEEEEEEC-ccceEEEEEEeC-CCcccceECCCCCEEEEeccC-------cccCcceeeecccc
Confidence 3445 4433 23333466677777 355555554432 244678899999999888753 23344444444334
Q ss_pred cceEEEEccCC-----CCCcEEEEEEcCCeEEEEeCCC-----CceEEEEcCcCCceeEEEEeCCCCEEEEEe-CCCcEE
Q 007411 400 IPYVVKLNPDD-----DKQNILLAGMSDKKIVQWDMNT-----KEITQEYDQHLGAVNTITFVDSNRRFVTSS-DDKSLR 468 (604)
Q Consensus 400 ~~~~~~~~~~~-----~~~~~lvsg~~dg~I~iwD~~s-----~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs-~Dg~I~ 468 (604)
...++.+.+.. .++.+... .++.|.++|.++ ...+..+. -......+.++|+|+++++++ .+.+|.
T Consensus 270 ~d~~vvfni~~iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVS 346 (635)
T PRK02888 270 RDWVVVFNIARIEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVT 346 (635)
T ss_pred CceEEEEchHHHHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEE
Confidence 44555554431 12233333 367899999998 34444443 456678899999999887665 488999
Q ss_pred EEECCCCeE------------EEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 007411 469 VWEFGIPVV------------IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE 517 (604)
Q Consensus 469 iwdl~~~~~------------~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~ 517 (604)
|.|+.+... ...+. ........+|.++|+...+...|.+|..|++..
T Consensus 347 VIDv~k~k~~~~~~~~~~~~vvaeve--vGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 347 VIDVRKLDDLFDGKIKPRDAVVAEPE--LGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EEEChhhhhhhhccCCccceEEEeec--cCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 999977442 23332 233445678999999888899999999999865
No 336
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=0.0002 Score=72.40 Aligned_cols=83 Identities=14% Similarity=0.217 Sum_probs=70.4
Q ss_pred eEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCC-CEEEEEECCCcEEEE
Q 007411 306 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDG-TKFLTASYDKNIKYW 384 (604)
Q Consensus 306 i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg-~~L~s~s~Dg~I~vW 384 (604)
...+.+|...|..++|+|.+..+|..++.+.+|+|.|+ .+..++..+..| ..+.+++|.-+. ++|..|...|.|.||
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dl-et~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlvy 263 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDL-ETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVY 263 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEec-ccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEE
Confidence 33667888999999999995568999999999999999 677888888878 889999999855 566777789999999
Q ss_pred ECCCCc
Q 007411 385 DTETGQ 390 (604)
Q Consensus 385 D~~t~~ 390 (604)
|++..+
T Consensus 264 D~R~~~ 269 (463)
T KOG1645|consen 264 DMRQPE 269 (463)
T ss_pred EccCCC
Confidence 998654
No 337
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.98 E-value=0.0013 Score=68.06 Aligned_cols=215 Identities=16% Similarity=0.225 Sum_probs=127.6
Q ss_pred CcEEEEECCCCcEEEEeeCC--CcceEEEEccCCC----CCcEEEEEEc---------C-CeEEEEeCCCC-----ce--
Q 007411 379 KNIKYWDTETGQVIRTFSTG--KIPYVVKLNPDDD----KQNILLAGMS---------D-KKIVQWDMNTK-----EI-- 435 (604)
Q Consensus 379 g~I~vWD~~t~~~i~~~~~~--~~~~~~~~~~~~~----~~~~lvsg~~---------d-g~I~iwD~~s~-----~~-- 435 (604)
..|++.|..+.+.+..+... ..+.+++...... ...++++|+. . |.|.++++... ++
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 46888998888887766543 3333333322221 2577887764 2 89999999884 22
Q ss_pred EEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCe-EEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEE
Q 007411 436 TQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPV-VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYS 514 (604)
Q Consensus 436 ~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~-~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd 514 (604)
+.. ....++|++++-. .+ +|+++. .+.|.+|++.... ....-.......+.++.. .++++++|..-..|.++.
T Consensus 82 i~~-~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~ 155 (321)
T PF03178_consen 82 IHS-TEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLR 155 (321)
T ss_dssp EEE-EEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEE
T ss_pred EEE-EeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEec--cccEEEEEEcccCEEEEE
Confidence 222 2357889999887 34 455554 4889999998877 444433223334444444 467999999988888875
Q ss_pred cCC-ceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC-------C--eeEEEEecC-CCcEEEE--
Q 007411 515 TRE-RFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS-------C--KVFRTLKCH-EGVCIGC-- 581 (604)
Q Consensus 515 ~~~-~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t-------~--~~~~~l~~h-~~~V~~v-- 581 (604)
.+. ...+..... ......++++.|-++++.+++++.+|.|.++.... + ++......| ...|+++
T Consensus 156 ~~~~~~~l~~va~---d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~ 232 (321)
T PF03178_consen 156 YDEENNKLILVAR---DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRR 232 (321)
T ss_dssp EETTTE-EEEEEE---ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE
T ss_pred EEccCCEEEEEEe---cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEE
Confidence 543 222222221 11245677888886767999999999999998752 2 233233333 3456666
Q ss_pred -EEecC--CCC-----EEEEEeCCCcEEE
Q 007411 582 -EWHPL--EQS-----KVATCGWDGLIKY 602 (604)
Q Consensus 582 -~~sp~--~~~-----~l~tgg~DG~I~v 602 (604)
.+.|. +.. .++.++.+|.|-+
T Consensus 233 ~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 233 GSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp --SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred EEeeecCCCCcccccceEEEEecCCEEEE
Confidence 44441 222 4888888998863
No 338
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.94 E-value=0.0011 Score=70.83 Aligned_cols=228 Identities=16% Similarity=0.229 Sum_probs=138.5
Q ss_pred CeeeEEecCCCCceeeEEEccCCCEEEEEEC---C-CcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcC
Q 007411 347 GKCMRTYMGHSKAVRDISFCNDGTKFLTASY---D-KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD 422 (604)
Q Consensus 347 ~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~---D-g~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~d 422 (604)
+...+.+..-...+..-+|+|++..++-.+. . ..+.++++.+++.............-.|+|++. .++++...|
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~--~l~f~~~rd 259 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGS--KLAFSSSRD 259 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCC--EEEEEECCC
Confidence 3444444445566777889998887664432 2 359999999998887777666667777888663 677787777
Q ss_pred Ce--EEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeC-CC--cEEEEECCCCeEEEEeecCCCCcccEEEEcCC
Q 007411 423 KK--IVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD-DK--SLRVWEFGIPVVIKYISEPHMHSMPSISLHPN 497 (604)
Q Consensus 423 g~--I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~-Dg--~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~ 497 (604)
|. |+++|+.++...+ +..-.+.-..-.|+|+|+.++-.++ .| .|.++++.......... ....-..-.|+|+
T Consensus 260 g~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~--~~~~~~~p~~Spd 336 (425)
T COG0823 260 GSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTF--SGGGNSNPVWSPD 336 (425)
T ss_pred CCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeec--cCCCCcCccCCCC
Confidence 75 6667887776443 4433444446789999999887765 34 46666766665533332 2222237789999
Q ss_pred CCEEEEEEcC-Ce--EEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCC--cEEEEeCCCCeeEEEEe
Q 007411 498 TNWLAAQSLD-NQ--ILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG--KCWFWDWKSCKVFRTLK 572 (604)
Q Consensus 498 g~~l~s~s~D-g~--I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG--~I~iwd~~t~~~~~~l~ 572 (604)
|++|+..+.. |. |.++++.++... ..+... .....-+|.++|+.|+..+..+ .+..--..+++....+.
T Consensus 337 G~~i~~~~~~~g~~~i~~~~~~~~~~~---~~lt~~---~~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s~~g~~~~~~~ 410 (425)
T COG0823 337 GDKIVFESSSGGQWDIDKNDLASGGKI---RILTST---YLNESPSWAPNGRMIMFSSGQGGGSVLSLVSLDGRVSRPLP 410 (425)
T ss_pred CCEEEEEeccCCceeeEEeccCCCCcE---EEcccc---ccCCCCCcCCCCceEEEeccCCCCceEEEeeccceeEEEEe
Confidence 9999888753 44 566666544321 111111 1122356888888877554432 22222223444444554
Q ss_pred cCCCcEEEEEEec
Q 007411 573 CHEGVCIGCEWHP 585 (604)
Q Consensus 573 ~h~~~V~~v~~sp 585 (604)
...+.+..-+|+|
T Consensus 411 ~~~~~~~~p~w~~ 423 (425)
T COG0823 411 LADGDVRVPAWSP 423 (425)
T ss_pred ccCcceecccccC
Confidence 4445556666655
No 339
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.91 E-value=8.9e-06 Score=86.37 Aligned_cols=203 Identities=14% Similarity=0.196 Sum_probs=126.1
Q ss_pred CceeeEEEccCC--CEEEEEECCCcEEEEECCCCcEE-EEeeCCCcceEEEEccCCCCCcEEEEEE----cCCeEEEEeC
Q 007411 358 KAVRDISFCNDG--TKFLTASYDKNIKYWDTETGQVI-RTFSTGKIPYVVKLNPDDDKQNILLAGM----SDKKIVQWDM 430 (604)
Q Consensus 358 ~~V~~l~fspdg--~~L~s~s~Dg~I~vWD~~t~~~i-~~~~~~~~~~~~~~~~~~~~~~~lvsg~----~dg~I~iwD~ 430 (604)
..+.|++++-+. ..++.|..+|.|.+-.++...-- ..+..+....|.+..+.+-+.+.|++|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 345666665433 46778888899988877643322 3344444444555444444556778774 3678999999
Q ss_pred CCC--ceE--EEEcC-cCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcC-CCCEEEEE
Q 007411 431 NTK--EIT--QEYDQ-HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHP-NTNWLAAQ 504 (604)
Q Consensus 431 ~s~--~~~--~~~~~-h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~s~ 504 (604)
.++ .+. ..+.+ .....++++|..+.+.+++|.....+.++|++........ -....+..+.+.| .++++++-
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~s--vnTk~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSS--VNTKYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhh--hhhhhcccceecCCCCCceecc
Confidence 876 111 12222 4456678999988889999999999999999844322221 1334577788899 77888776
Q ss_pred EcCCeEEEEE-cCCceeecccccccCcccccceEEEEEcCC--CCEEEEEcCCCcEEEEeCC
Q 007411 505 SLDNQILIYS-TRERFQLNKKKRFAGHIVAGYACQVNFSPD--GRFVMSGDGEGKCWFWDWK 563 (604)
Q Consensus 505 s~Dg~I~iwd-~~~~~~~~~~~~~~~~~~~~~v~~l~~spd--g~~L~sgs~dG~I~iwd~~ 563 (604)
. ||.|.+|| .++-.................+..++|+|- |.+.+..-..++|+++|+.
T Consensus 215 ~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 215 S-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred c-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 5 99999999 333221111111111111234677999984 4333444456889999875
No 340
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.89 E-value=0.0031 Score=66.82 Aligned_cols=234 Identities=11% Similarity=0.060 Sum_probs=129.9
Q ss_pred CeEEEEEcCCCCCEEEEEECCCcEEEEecCCCC------------------------------------------eeeEE
Q 007411 315 GVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG------------------------------------------KCMRT 352 (604)
Q Consensus 315 ~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~------------------------------------------~~~~~ 352 (604)
.|+++.|.+. ..-|++|...|.|.||...... .+...
T Consensus 3 ~v~~vs~a~~-t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPE-TLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETT-TTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCC-CceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 4889999998 6778888899999998662110 01122
Q ss_pred ecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCC---------cceEEEEc-----cCCCCCcEEEE
Q 007411 353 YMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK---------IPYVVKLN-----PDDDKQNILLA 418 (604)
Q Consensus 353 ~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~---------~~~~~~~~-----~~~~~~~~lvs 418 (604)
+....++|++++.|.= -+++.|..+|.+.|.|++....+..-.... .+.++.|. -++...-++++
T Consensus 82 ~~~~~g~vtal~~S~i-GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDI-GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp E---S-SEEEEEE-BT-SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eeccCCcEeEEecCCC-cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 2344688999999854 489999999999999999888877643222 22233332 12222357899
Q ss_pred EEcCCeEEEEeCC--C-Cc----eEEEEcCcCCceeEEEEe-CCC--------------------CEEEEEeCCCcEEEE
Q 007411 419 GMSDKKIVQWDMN--T-KE----ITQEYDQHLGAVNTITFV-DSN--------------------RRFVTSSDDKSLRVW 470 (604)
Q Consensus 419 g~~dg~I~iwD~~--s-~~----~~~~~~~h~~~V~~i~~s-p~~--------------------~~l~sgs~Dg~I~iw 470 (604)
|+..|.+.+|.+. . +. .......+.++|..|... .+. +-++....+..++++
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~ 240 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVF 240 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE
T ss_pred EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEE
Confidence 9999999999774 2 21 112223466777666633 210 124444456889999
Q ss_pred ECCCCeEEEEeecCCCCcccEEEEc-----CCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCC
Q 007411 471 EFGIPVVIKYISEPHMHSMPSISLH-----PNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDG 545 (604)
Q Consensus 471 dl~~~~~~~~~~~~~~~~v~~l~~s-----p~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg 545 (604)
...+.+....... .......+++- ..+..|++-..+|.|++|.+..-..+......... ....+...+++++|
T Consensus 241 ~~~~~k~~~K~~~-~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~-d~~~~~~ssis~~G 318 (395)
T PF08596_consen 241 KPPKSKGAHKSFD-DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPL-DSRRLSSSSISRNG 318 (395)
T ss_dssp -TT---EEEEE-S-S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS----HHHHTT-EE-TTS
T ss_pred eCCCCcccceeec-cccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcc-ccccccccEECCCC
Confidence 9988776665542 22233334442 35677888899999999999876555443332111 12233346778888
Q ss_pred CEEEEEc
Q 007411 546 RFVMSGD 552 (604)
Q Consensus 546 ~~L~sgs 552 (604)
..++-.+
T Consensus 319 di~~~~g 325 (395)
T PF08596_consen 319 DIFYWTG 325 (395)
T ss_dssp -EEEE-S
T ss_pred CEEEEeC
Confidence 8776554
No 341
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.89 E-value=0.012 Score=63.02 Aligned_cols=111 Identities=18% Similarity=0.214 Sum_probs=78.3
Q ss_pred eeEEEEeCC-CCEEEEE----eCCCc----EEEEECCCC--eEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEE
Q 007411 446 VNTITFVDS-NRRFVTS----SDDKS----LRVWEFGIP--VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYS 514 (604)
Q Consensus 446 V~~i~~sp~-~~~l~sg----s~Dg~----I~iwdl~~~--~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd 514 (604)
..++.|+-. ...+.+. +.+|. -++|++... +.+.....+....+.+++++|+...|+.|+.||.|.+||
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD 287 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYD 287 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEE
Confidence 355666642 3334332 33443 345666433 334444557888999999999999999999999999999
Q ss_pred cCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCC
Q 007411 515 TRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 563 (604)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~ 563 (604)
...+....... .-..+.++|+|+|.++++|+..|.|.+||+.
T Consensus 288 ~~~~~t~~~ka-------~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 288 TTRGVTLLAKA-------EFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred cCCCeeeeeee-------cccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 87653321111 2335579999999999999999999999975
No 342
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=0.031 Score=59.36 Aligned_cols=237 Identities=15% Similarity=0.171 Sum_probs=148.9
Q ss_pred ceeeEEEccCCCEEEEEE-CCCcEEEEECCCCcEEEEeeCC-CcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceE
Q 007411 359 AVRDISFCNDGTKFLTAS-YDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEIT 436 (604)
Q Consensus 359 ~V~~l~fspdg~~L~s~s-~Dg~I~vWD~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~ 436 (604)
....+...+++..+.... ....+...+............+ ..+..+.+.+.. ...++....++.|.+.|..+....
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~--~~vyv~~~~~~~v~vid~~~~~~~ 109 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAG--NKVYVTTGDSNTVSVIDTATNTVL 109 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCC--CeEEEecCCCCeEEEEcCccccee
Confidence 556677888875554443 2234555555522222222223 334455555543 356777777899999998887776
Q ss_pred EEEcCcCCceeEEEEeCCCCEEEEEeC---CCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEE-cCCeEEE
Q 007411 437 QEYDQHLGAVNTITFVDSNRRFVTSSD---DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILI 512 (604)
Q Consensus 437 ~~~~~h~~~V~~i~~sp~~~~l~sgs~---Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s-~Dg~I~i 512 (604)
.....-. ....+.+++++..+..+.. ++++.+.|-.+...+..+..+. .+ ..+++.|+|..+++.. .++.|.+
T Consensus 110 ~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~v 186 (381)
T COG3391 110 GSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN-TP-TGVAVDPDGNKVYVTNSDDNTVSV 186 (381)
T ss_pred eEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC-Cc-ceEEECCCCCeEEEEecCCCeEEE
Confidence 6654222 6678999999987776655 6889999998888888854332 33 8999999999766665 7799999
Q ss_pred EEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCC---CcEEEEeCCCCeeEEE-EecCCCcEEEEEEecCCC
Q 007411 513 YSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE---GKCWFWDWKSCKVFRT-LKCHEGVCIGCEWHPLEQ 588 (604)
Q Consensus 513 wd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~d---G~I~iwd~~t~~~~~~-l~~h~~~V~~v~~sp~~~ 588 (604)
++........ ...............+.++|+|.++.+.... +.+...|..++..... +.........+..+| .+
T Consensus 187 i~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p-~g 264 (381)
T COG3391 187 IDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDP-AG 264 (381)
T ss_pred EeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECC-CC
Confidence 9976654332 1100011112334468999999977665443 5999999998887765 222221345678888 45
Q ss_pred CEEEEE-eCCCcEEE
Q 007411 589 SKVATC-GWDGLIKY 602 (604)
Q Consensus 589 ~~l~tg-g~DG~I~v 602 (604)
..+... +..+.+.+
T Consensus 265 ~~~yv~~~~~~~V~v 279 (381)
T COG3391 265 KAAYVANSQGGTVSV 279 (381)
T ss_pred CEEEEEecCCCeEEE
Confidence 555544 22244443
No 343
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=97.87 E-value=0.037 Score=58.70 Aligned_cols=274 Identities=9% Similarity=0.094 Sum_probs=147.5
Q ss_pred CCCCCEEEEEECCCcEEEEecCCCC-ee--eEEecCCCCceeeEEEcc----CCCEEEEEECCCcEEEEECCCC------
Q 007411 323 PKYGHLILSAGMDTKVKIWDVVNSG-KC--MRTYMGHSKAVRDISFCN----DGTKFLTASYDKNIKYWDTETG------ 389 (604)
Q Consensus 323 p~~g~~L~sgs~Dg~I~IWd~~~~~-~~--~~~~~~h~~~V~~l~fsp----dg~~L~s~s~Dg~I~vWD~~t~------ 389 (604)
+++...|++||..|.++|++....+ +. +..-..-..+|..|..-. .....++.=.-+.|.||.+...
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCccc
Confidence 3446799999999999999984322 11 111123457788877542 2333344455678888877211
Q ss_pred ------cEEEEeeCCCcceEEEEccCCCC--CcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEE
Q 007411 390 ------QVIRTFSTGKIPYVVKLNPDDDK--QNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTS 461 (604)
Q Consensus 390 ------~~i~~~~~~~~~~~~~~~~~~~~--~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sg 461 (604)
+.+.........+.+++-+.+.- ..++.+-+.||.+.+|+-+.-.....+.. .--...+.+.+....|+++
T Consensus 114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ 192 (418)
T PF14727_consen 114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTA 192 (418)
T ss_pred CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEe
Confidence 11222233444455555444432 47888999999999999776554444443 2233457888888899999
Q ss_pred eCCCcEEEEECCCCeEE---------------------EEeecCCCCcccEEE---EcCCCCEEEEEEcCCeEEEEEcCC
Q 007411 462 SDDKSLRVWEFGIPVVI---------------------KYISEPHMHSMPSIS---LHPNTNWLAAQSLDNQILIYSTRE 517 (604)
Q Consensus 462 s~Dg~I~iwdl~~~~~~---------------------~~~~~~~~~~v~~l~---~sp~g~~l~s~s~Dg~I~iwd~~~ 517 (604)
+.+..|..|....-... ....-.-...+..|. ++.....+++-+ ...+.+.+...
T Consensus 193 sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~~G 271 (418)
T PF14727_consen 193 SSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG-ERSLFCLKDNG 271 (418)
T ss_pred cCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEe-cceEEEEcCCC
Confidence 99888888876321100 000001112222222 222222333333 23344444322
Q ss_pred ceeecccccccCcccccceEEE--EEcCC-CCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcE-EEEEEecCCCCEEEE
Q 007411 518 RFQLNKKKRFAGHIVAGYACQV--NFSPD-GRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVC-IGCEWHPLEQSKVAT 593 (604)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~v~~l--~~spd-g~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V-~~v~~sp~~~~~l~t 593 (604)
.+...+.+......-.+..+ ...+. +..++.++.++.+.||. ..+++..-+....+| ..++..+.-..+|++
T Consensus 272 --~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~--d~~L~WsA~l~~~PVal~v~~~~~~~G~IV~ 347 (418)
T PF14727_consen 272 --SLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE--DTTLVWSAQLPHVPVALSVANFNGLKGLIVS 347 (418)
T ss_pred --eEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEe--CCeEEEecCCCCCCEEEEecccCCCCceEEE
Confidence 22223333322111111111 11222 12588889999999985 445555555433333 223333334568999
Q ss_pred EeCCCcEEE
Q 007411 594 CGWDGLIKY 602 (604)
Q Consensus 594 gg~DG~I~v 602 (604)
-+.+|.|.+
T Consensus 348 Ls~~G~L~v 356 (418)
T PF14727_consen 348 LSDEGQLSV 356 (418)
T ss_pred EcCCCcEEE
Confidence 999999875
No 344
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.84 E-value=0.0073 Score=64.87 Aligned_cols=222 Identities=13% Similarity=0.154 Sum_probs=110.9
Q ss_pred CCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCc
Q 007411 311 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ 390 (604)
Q Consensus 311 gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~ 390 (604)
...-....|.++|+ +++++.++ ||...|+.. ...+... .+.-..++|.+. +.+++-...+.|.|+.--...
T Consensus 30 ~~~~~p~~ls~npn-gr~v~V~g-~geY~iyt~-~~~r~k~-----~G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 30 SCEIYPQSLSHNPN-GRFVLVCG-DGEYEIYTA-LAWRNKA-----FGSGLSFVWSSR-NRYAVLESSSTIKIYKNFKNE 100 (443)
T ss_dssp E-SS--SEEEE-TT-SSEEEEEE-TTEEEEEET-TTTEEEE-----EEE-SEEEE-TS-SEEEEE-TTS-EEEEETTEE-
T ss_pred CCCcCCeeEEECCC-CCEEEEEc-CCEEEEEEc-cCCcccc-----cCceeEEEEecC-ccEEEEECCCeEEEEEcCccc
Confidence 34445788999999 88888854 678888874 2222221 234567889884 457777778899997432333
Q ss_pred EEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEE
Q 007411 391 VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVW 470 (604)
Q Consensus 391 ~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iw 470 (604)
....+..... +-.+.. +.+|...+ ++.|.+||+.+++.+..+... +|..+.|++++.+++..+.+ .+.|+
T Consensus 101 ~~k~i~~~~~--~~~If~----G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il 170 (443)
T PF04053_consen 101 VVKSIKLPFS--VEKIFG----GNLLGVKS-SDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYIL 170 (443)
T ss_dssp TT-----SS---EEEEE-----SSSEEEEE-TTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEE
T ss_pred cceEEcCCcc--cceEEc----CcEEEEEC-CCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEE
Confidence 2223333321 222222 24555554 458999999999999999743 48999999999999988865 67787
Q ss_pred ECCCC-----------eEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEE
Q 007411 471 EFGIP-----------VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQV 539 (604)
Q Consensus 471 dl~~~-----------~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l 539 (604)
+.... ..+..+.+ ....|.+.+|..+ .|+-.+.. .|.. +.++... .+..+ ..++.-+
T Consensus 171 ~~~~~~~~~~~~~g~e~~f~~~~E-~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~-~i~~l-----d~~~yll 238 (443)
T PF04053_consen 171 KYNLEAVAAIPEEGVEDAFELIHE-ISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETG-IIAHL-----DKPLYLL 238 (443)
T ss_dssp EE-HHHHHHBTTTB-GGGEEEEEE-E-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEE-EEEE------SS--EEE
T ss_pred EecchhcccccccCchhceEEEEE-ecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcc-eEEEc-----CCceEEE
Confidence 76443 01122211 1456788888755 44444433 5554 2222211 11111 1223335
Q ss_pred EEcCCCCEEEEEcCCCcEEEEeCC
Q 007411 540 NFSPDGRFVMSGDGEGKCWFWDWK 563 (604)
Q Consensus 540 ~~spdg~~L~sgs~dG~I~iwd~~ 563 (604)
.+.+..+.|+..+.++.|..+.+.
T Consensus 239 gy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 239 GYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp EEETTTTEEEEE-TT--EEEEE--
T ss_pred EEEccCCEEEEEECCCCEEEEEEC
Confidence 555655667777777777666543
No 345
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.80 E-value=0.001 Score=71.01 Aligned_cols=122 Identities=11% Similarity=0.096 Sum_probs=84.3
Q ss_pred EEEEeeCCCcceEEEEccCCCCCcEEEEE----EcCCe----EEEEeCCCCceEE--E-EcCcCCceeEEEEeCCCCEEE
Q 007411 391 VIRTFSTGKIPYVVKLNPDDDKQNILLAG----MSDKK----IVQWDMNTKEITQ--E-YDQHLGAVNTITFVDSNRRFV 459 (604)
Q Consensus 391 ~i~~~~~~~~~~~~~~~~~~~~~~~lvsg----~~dg~----I~iwD~~s~~~~~--~-~~~h~~~V~~i~~sp~~~~l~ 459 (604)
.+..+.....+..+.|+...+ +.+.+. +.+|. -++|++..++... . --.....|.|++++|+...|+
T Consensus 198 vL~yirTE~dPl~~~Fs~~~~--~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLv 275 (545)
T PF11768_consen 198 VLSYIRTENDPLDVEFSLNQP--YQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLV 275 (545)
T ss_pred EEEEEEecCCcEEEEccCCCC--cEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEE
Confidence 344445555666666665443 333332 22332 3456665443221 1 123677899999999999999
Q ss_pred EEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 007411 460 TSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE 517 (604)
Q Consensus 460 sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~ 517 (604)
.|+.||+|.+||...+...... ..-..+.++|||+|..|++|+..|.+.+||+.-
T Consensus 276 lGC~DgSiiLyD~~~~~t~~~k---a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 276 LGCEDGSIILYDTTRGVTLLAK---AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred EEecCCeEEEEEcCCCeeeeee---ecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 9999999999998777544332 345578899999999999999999999999753
No 346
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.73 E-value=0.017 Score=58.95 Aligned_cols=223 Identities=13% Similarity=0.053 Sum_probs=125.7
Q ss_pred EEccCCC-EEEEEECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcC-
Q 007411 364 SFCNDGT-KFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ- 441 (604)
Q Consensus 364 ~fspdg~-~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~- 441 (604)
.|.++.. ++.+--..+.|.-|+..+++...............+.. . ..|+++. ..+.+++..++..+..+..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~---~-g~Lv~~~--~g~~~~~~~~~~~~t~~~~~ 104 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDA---G-GRLIACE--HGVRLLDPDTGGKITLLAEP 104 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCCcccceeecC---C-CeEEEEc--cccEEEeccCCceeEEeccc
Confidence 4566555 34444456778888887664433222222222222222 1 2233332 3355666655554332211
Q ss_pred ----cCCceeEEEEeCCCCEEEEEeC-----------CCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEc
Q 007411 442 ----HLGAVNTITFVDSNRRFVTSSD-----------DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL 506 (604)
Q Consensus 442 ----h~~~V~~i~~sp~~~~l~sgs~-----------Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~ 506 (604)
.....+.+.+.|+|.+.++... -|.|+.+|. .+...+.+ ..+...-+.|+|+|+++.|..+..
T Consensus 105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~-~~~~~~~NGla~SpDg~tly~aDT 182 (307)
T COG3386 105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLL-DDDLTIPNGLAFSPDGKTLYVADT 182 (307)
T ss_pred cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEee-cCcEEecCceEECCCCCEEEEEeC
Confidence 1245677888899877665544 133444443 33333333 334556788999999988877765
Q ss_pred C-CeEEEEEcCC--ceeecccccccCcccccceEEEEEcCCCCEEEEEcCCC-cEEEEeCCCCeeEEEEecCCCcEEEEE
Q 007411 507 D-NQILIYSTRE--RFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG-KCWFWDWKSCKVFRTLKCHEGVCIGCE 582 (604)
Q Consensus 507 D-g~I~iwd~~~--~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG-~I~iwd~~t~~~~~~l~~h~~~V~~v~ 582 (604)
. +.|..|++.. ...-.....+......+..-.++...+|.+-+++...| .|.+|+.. |+++..+..+...+++++
T Consensus 183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~ 261 (307)
T COG3386 183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPA 261 (307)
T ss_pred CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccce
Confidence 4 7888887752 11111110111111234444577888888876555554 99999977 999999998877788898
Q ss_pred EecCCCCEEEEEe
Q 007411 583 WHPLEQSKVATCG 595 (604)
Q Consensus 583 ~sp~~~~~l~tgg 595 (604)
|--.+.+.|+..+
T Consensus 262 FgG~~~~~L~iTs 274 (307)
T COG3386 262 FGGPDLNTLYITS 274 (307)
T ss_pred EeCCCcCEEEEEe
Confidence 8653344444333
No 347
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.70 E-value=0.02 Score=61.33 Aligned_cols=190 Identities=16% Similarity=0.209 Sum_probs=97.0
Q ss_pred EEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCc------eEEEEcCcCCceeEEEEeCC
Q 007411 381 IKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE------ITQEYDQHLGAVNTITFVDS 454 (604)
Q Consensus 381 I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~------~~~~~~~h~~~V~~i~~sp~ 454 (604)
|.||+.. |+.+.++.-.. ...+.+.+... ..|++-..||.+++||+.... .+....-....+..+.+..+
T Consensus 63 I~iys~s-G~ll~~i~w~~-~~iv~~~wt~~--e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~ 138 (410)
T PF04841_consen 63 IQIYSSS-GKLLSSIPWDS-GRIVGMGWTDD--EELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKN 138 (410)
T ss_pred EEEECCC-CCEeEEEEECC-CCEEEEEECCC--CeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCC
Confidence 5666543 44444443332 33344444332 347788899999999986332 11111111122222233334
Q ss_pred CCEEEEEeCCCcEEEEE-CCCCeEEEEeec-C------CCC-cccE-EEEcCCCCEEEEEEcCCeEEEEEcCCceeeccc
Q 007411 455 NRRFVTSSDDKSLRVWE-FGIPVVIKYISE-P------HMH-SMPS-ISLHPNTNWLAAQSLDNQILIYSTRERFQLNKK 524 (604)
Q Consensus 455 ~~~l~sgs~Dg~I~iwd-l~~~~~~~~~~~-~------~~~-~v~~-l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~ 524 (604)
|-.++ ..++.+.+.. .......+.+.. + +.. .... ..++.+....+....++.+.+.+......
T Consensus 139 GivvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---- 212 (410)
T PF04841_consen 139 GIVVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---- 212 (410)
T ss_pred CEEEE--CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc----
Confidence 42222 2344444433 221211111110 0 000 0111 22344444555555556666444322111
Q ss_pred ccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecC-CCcEEEEEEec
Q 007411 525 KRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCH-EGVCIGCEWHP 585 (604)
Q Consensus 525 ~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h-~~~V~~v~~sp 585 (604)
.. ..+.+..+++||+|++||.-..+|.+.+.+..-.+.+..+... ......+.|..
T Consensus 213 --i~---~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG 269 (410)
T PF04841_consen 213 --ID---SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCG 269 (410)
T ss_pred --cc---CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEEC
Confidence 11 1356888999999999999999999999987777777777654 34557788876
No 348
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.69 E-value=0.0048 Score=65.32 Aligned_cols=231 Identities=13% Similarity=0.054 Sum_probs=120.7
Q ss_pred ceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEE-EeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCC-----
Q 007411 359 AVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIR-TFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT----- 432 (604)
Q Consensus 359 ~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~-~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s----- 432 (604)
.|+.+.|+++..-|+++...|.|.||.+...+... .-... ..-..+.+. ...++.-.+-|+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~--~~~~~~~~~---------~~~~~~~~l~di~~r~~~~ 71 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPP--DLDYNFRRF---------SLNNSPGKLTDISDRAPPS 71 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S-----------GGGSS-SEEE-GGG--TT
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCc--ccCcccccc---------cccCCCcceEEehhhCCcc
Confidence 58899999999999999999999999876544332 00000 000000000 00111222233321
Q ss_pred ---C-ceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeec-------CCCCcccEEEEcC-----
Q 007411 433 ---K-EITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISE-------PHMHSMPSISLHP----- 496 (604)
Q Consensus 433 ---~-~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~-------~~~~~v~~l~~sp----- 496 (604)
+ .+...+....++|++++.+.-| +++.|..+|.+.|.|+|.+..+..... .....++++.|..
T Consensus 72 ~~~gf~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~ 150 (395)
T PF08596_consen 72 LKEGFLPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGG 150 (395)
T ss_dssp -SEEEEEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TT
T ss_pred cccccCchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCC
Confidence 1 2344455668999999998555 999999999999999999988776322 1233466777752
Q ss_pred CC---CEEEEEEcCCeEEEEEcCC----ceeecccccccCcccccceEEEE-EcCC-C-------------------CEE
Q 007411 497 NT---NWLAAQSLDNQILIYSTRE----RFQLNKKKRFAGHIVAGYACQVN-FSPD-G-------------------RFV 548 (604)
Q Consensus 497 ~g---~~l~s~s~Dg~I~iwd~~~----~~~~~~~~~~~~~~~~~~v~~l~-~spd-g-------------------~~L 548 (604)
++ -.|++|+..|.+.+|.+.- ++.......... ..+.+..+. |+.+ | .-+
T Consensus 151 D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~--~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~ 228 (395)
T PF08596_consen 151 DGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTN--HDSPILSIIPINADTGESALATISAMQGLSKGISIPGY 228 (395)
T ss_dssp SSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE----SS----EEEEEETTT--B-B-BHHHHHGGGGT----EE
T ss_pred CcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeecccc--CCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcE
Confidence 22 4788999999999998741 122111111101 122333222 2211 1 123
Q ss_pred EEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEec----CCCCEEEEEeCCCcEEEe
Q 007411 549 MSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHP----LEQSKVATCGWDGLIKYW 603 (604)
Q Consensus 549 ~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp----~~~~~l~tgg~DG~I~vW 603 (604)
+...++..++++...+.+..+......-.+..+.+.+ ..+..|++-..+|.|+++
T Consensus 229 vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~ 287 (395)
T PF08596_consen 229 VVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIY 287 (395)
T ss_dssp EEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEE
T ss_pred EEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEE
Confidence 3334466899999988887666553323444555531 145578888899999986
No 349
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.67 E-value=0.06 Score=59.61 Aligned_cols=241 Identities=15% Similarity=0.160 Sum_probs=137.8
Q ss_pred CCEEEEEECCCcEEEEecCCCCeeeEEecCCC-CceeeEEEcc---CCCEEEEEE------CCCcEEEEECCCCcEEEEe
Q 007411 326 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHS-KAVRDISFCN---DGTKFLTAS------YDKNIKYWDTETGQVIRTF 395 (604)
Q Consensus 326 g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~-~~V~~l~fsp---dg~~L~s~s------~Dg~I~vWD~~t~~~i~~~ 395 (604)
+..|+.++.|+.|.-.|. .+++.+....... ..-..+.-+| ++ .++.++ .+|.|..+|.++|+.+..+
T Consensus 120 ~~~v~v~t~dg~l~ALDa-~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 120 DGKVFFGTLDARLVALDA-KTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred CCEEEEEcCCCEEEEEEC-CCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 346777888999999998 6787776654211 0001111122 44 455543 2689999999999999876
Q ss_pred eCCCcceE-------------------------------EEEccCCCCCcEEEEEEcC-----C-----------eEEEE
Q 007411 396 STGKIPYV-------------------------------VKLNPDDDKQNILLAGMSD-----K-----------KIVQW 428 (604)
Q Consensus 396 ~~~~~~~~-------------------------------~~~~~~~~~~~~lvsg~~d-----g-----------~I~iw 428 (604)
........ .....+. ...+++.+..+ + .|.-.
T Consensus 198 ~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~-~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAl 276 (527)
T TIGR03075 198 YTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDP-ETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVAR 276 (527)
T ss_pred cCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcC-CCCeEEEeCCCCCCCCCCCCCCCCccceeEEEE
Confidence 54221100 0011111 23455555422 2 78889
Q ss_pred eCCCCceEEEEcCcCCce---------eEEEEeCCCC---EEEEEeCCCcEEEEECCCCeEEEE--------ee---cCC
Q 007411 429 DMNTKEITQEYDQHLGAV---------NTITFVDSNR---RFVTSSDDKSLRVWEFGIPVVIKY--------IS---EPH 485 (604)
Q Consensus 429 D~~s~~~~~~~~~h~~~V---------~~i~~sp~~~---~l~sgs~Dg~I~iwdl~~~~~~~~--------~~---~~~ 485 (604)
|+++|+....++.....+ .-+.+..+++ .++.+..+|.+++.|-.+++.+.. .. .+.
T Consensus 277 d~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~ 356 (527)
T TIGR03075 277 DPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLK 356 (527)
T ss_pred ccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCC
Confidence 999999988876522211 1122223555 677999999999999998877521 10 000
Q ss_pred C-Cc----------------------------ccEEEEcCCCCEEEEEEcC-----------------------------
Q 007411 486 M-HS----------------------------MPSISLHPNTNWLAAQSLD----------------------------- 507 (604)
Q Consensus 486 ~-~~----------------------------v~~l~~sp~g~~l~s~s~D----------------------------- 507 (604)
. .+ -..++++|...++++...+
T Consensus 357 ~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~ 436 (527)
T TIGR03075 357 TGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPP 436 (527)
T ss_pred CCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCC
Confidence 0 00 0125666666666554444
Q ss_pred ----CeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCC
Q 007411 508 ----NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHE 575 (604)
Q Consensus 508 ----g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~ 575 (604)
+.|.-+|+.+++..-....- .....+. +. -.|.+++.++.+|.++.+|.++|+.+..++...
T Consensus 437 ~~~~g~l~AiD~~tGk~~W~~~~~-~p~~~~~---l~--t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~ 502 (527)
T TIGR03075 437 DDHMGSLIAWDPITGKIVWEHKED-FPLWGGV---LA--TAGDLVFYGTLEGYFKAFDAKTGEELWKFKTGS 502 (527)
T ss_pred CCCceeEEEEeCCCCceeeEecCC-CCCCCcc---eE--ECCcEEEEECCCCeEEEEECCCCCEeEEEeCCC
Confidence 23444555554433222211 0000111 11 145577888889999999999999999988654
No 350
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.66 E-value=0.06 Score=57.68 Aligned_cols=168 Identities=11% Similarity=0.126 Sum_probs=93.9
Q ss_pred cEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcc------eEEEEc-cC
Q 007411 337 KVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP------YVVKLN-PD 409 (604)
Q Consensus 337 ~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~------~~~~~~-~~ 409 (604)
.|+||+. .|+.+..+.--.+.|.++.|+.+ ..|++...||.++++|+. |+. .+..+... .+..+. ..
T Consensus 62 ~I~iys~--sG~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~-G~~--~fsl~~~i~~~~v~e~~i~~~~~ 135 (410)
T PF04841_consen 62 SIQIYSS--SGKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLF-GEF--QFSLGEEIEEEKVLECRIFAIWF 135 (410)
T ss_pred EEEEECC--CCCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCC-Cce--eechhhhccccCccccccccccc
Confidence 4999987 67777766544489999999875 456677789999999986 333 33222111 111111 11
Q ss_pred CCCCcEEEEEEcCCeEEEEeCCCCc-eEEEE---cC-----cCC-ceeE-EEEeCCCCEEEEEeCCCcEEEEECCCCeEE
Q 007411 410 DDKQNILLAGMSDKKIVQWDMNTKE-ITQEY---DQ-----HLG-AVNT-ITFVDSNRRFVTSSDDKSLRVWEFGIPVVI 478 (604)
Q Consensus 410 ~~~~~~lvsg~~dg~I~iwD~~s~~-~~~~~---~~-----h~~-~V~~-i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~ 478 (604)
...+ +++-..++.|++..-.... ....+ .. |.. .+.. ..++.+....+....++.+.+.+-.....
T Consensus 136 ~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~- 212 (410)
T PF04841_consen 136 YKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ- 212 (410)
T ss_pred CCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc-
Confidence 1122 3333445556555332221 11111 10 000 0111 23444444555555555566444222111
Q ss_pred EEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 007411 479 KYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE 517 (604)
Q Consensus 479 ~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~ 517 (604)
+ ...+++..|++||++++||.-..+|.+.+.+..-
T Consensus 213 --i--~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf 247 (410)
T PF04841_consen 213 --I--DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDF 247 (410)
T ss_pred --c--cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcc
Confidence 1 2346899999999999999999999998887543
No 351
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.63 E-value=0.0096 Score=68.42 Aligned_cols=232 Identities=13% Similarity=0.144 Sum_probs=134.9
Q ss_pred CCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceE
Q 007411 357 SKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEIT 436 (604)
Q Consensus 357 ~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~ 436 (604)
...|.++.|..++..++.+..+|.|.+-|.++......-.....+.+.+|+++. .+++..+..++|.+-+ .+-.++
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~De---e~l~liT~~~tll~mT-~~f~~i 143 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDE---ELLALITGRQTLLFMT-KDFEPI 143 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCC---cEEEEEeCCcEEEEEe-ccccch
Confidence 357999999999999999999999999999888766655566677788888865 4666666666665543 222222
Q ss_pred EEEcC-----cCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEE----cC
Q 007411 437 QEYDQ-----HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS----LD 507 (604)
Q Consensus 437 ~~~~~-----h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s----~D 507 (604)
....- ..+....+-|-.....| -|+ .|.....+........... .....-++|+|--||.++++.. .+
T Consensus 144 ~E~~L~~d~~~~sk~v~VGwGrkeTqf-rgs-~gr~~~~~~~~~ek~~~~~-~~~~~~~~IsWRgDg~~fAVs~~~~~~~ 220 (1265)
T KOG1920|consen 144 AEKPLDADDERKSKFVNVGWGRKETQF-RGS-EGRQAARQKIEKEKALEQI-EQDDHKTSISWRGDGEYFAVSFVESETG 220 (1265)
T ss_pred hccccccccccccccceecccccceee-ecc-hhhhcccccccccccccch-hhccCCceEEEccCCcEEEEEEEeccCC
Confidence 22111 11122222232211111 111 1111111111111000000 1223346789999999999843 23
Q ss_pred -CeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEc---CCCcEEEEeCCCCeeEE----EEecCCCcEE
Q 007411 508 -NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD---GEGKCWFWDWKSCKVFR----TLKCHEGVCI 579 (604)
Q Consensus 508 -g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs---~dG~I~iwd~~t~~~~~----~l~~h~~~V~ 579 (604)
..|++||.. +. ++... ....+.-.+++|-|.|..+++-. +++.|.+|.- +|-.-. .+......|.
T Consensus 221 ~RkirV~drE-g~-Lns~s----e~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve 293 (1265)
T KOG1920|consen 221 TRKIRVYDRE-GA-LNSTS----EPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVE 293 (1265)
T ss_pred ceeEEEeccc-ch-hhccc----CcccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccccchh
Confidence 789999976 22 21111 11122333699999999998753 5668999984 433222 2233344589
Q ss_pred EEEEecCCCCEEEE---EeCCCcEEEe
Q 007411 580 GCEWHPLEQSKVAT---CGWDGLIKYW 603 (604)
Q Consensus 580 ~v~~sp~~~~~l~t---gg~DG~I~vW 603 (604)
.++|+. ++..|++ +.....|++|
T Consensus 294 ~L~Wns-~sdiLAv~~~~~e~~~v~lw 319 (1265)
T KOG1920|consen 294 ELAWNS-NSDILAVVTSNLENSLVQLW 319 (1265)
T ss_pred eeeecC-CCCceeeeecccccceEEEE
Confidence 999999 6778877 5545559998
No 352
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.63 E-value=0.00022 Score=77.95 Aligned_cols=194 Identities=14% Similarity=0.183 Sum_probs=123.1
Q ss_pred eeEEEccCCCEEEEEEC----CCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceE
Q 007411 361 RDISFCNDGTKFLTASY----DKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEIT 436 (604)
Q Consensus 361 ~~l~fspdg~~L~s~s~----Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~ 436 (604)
+-.+|+|...+|++++. .|.|.|| .++|++-+....+-....++|+|.. .+|+.|-.-|.+.+|...+.+.-
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt~P~hatSLCWHpe~---~vLa~gwe~g~~~v~~~~~~e~h 94 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVTYPVHATSLCWHPEE---FVLAQGWEMGVSDVQKTNTTETH 94 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEE-ecCCCCCcccccceehhhhccChHH---HHHhhccccceeEEEecCCceee
Confidence 34579998888888865 4788887 4667765555444455567777754 57888888999999999888777
Q ss_pred EEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEee--c-CCCCc--ccEEEEcCCCC------EEEEEE
Q 007411 437 QEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYIS--E-PHMHS--MPSISLHPNTN------WLAAQS 505 (604)
Q Consensus 437 ~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~--~-~~~~~--v~~l~~sp~g~------~l~s~s 505 (604)
.....|..+|..+.|+++|..++++..-|.|.+|.+.....+.... . ..... ..|..+++++. ..++.+
T Consensus 95 tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtg 174 (1416)
T KOG3617|consen 95 TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTG 174 (1416)
T ss_pred eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccC
Confidence 7777899999999999999999999999999999876332222111 0 01112 23344455431 123333
Q ss_pred cCCeEE-EEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEe
Q 007411 506 LDNQIL-IYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK 572 (604)
Q Consensus 506 ~Dg~I~-iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~ 572 (604)
.++.+- .++.+.. .. .... .-.=.|+|..++.++.+|+|+-.| ..|++....+
T Consensus 175 De~alD~~fnwk~~--------~a----~rs~-~ksgv~~g~~F~~~~~~GtVyyvd-q~g~~~~V~k 228 (1416)
T KOG3617|consen 175 DESALDEPFNWKES--------LA----ERSD-EKSGVPKGTEFLFAGKSGTVYYVD-QNGRQRTVHK 228 (1416)
T ss_pred chhhhcccccCccc--------hh----hccc-cccCCCCCcEEEEEcCCceEEEEc-CCCcEEEEEE
Confidence 333222 2222110 00 0000 011246788888888999998888 4555554444
No 353
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.58 E-value=0.046 Score=58.74 Aligned_cols=243 Identities=14% Similarity=0.230 Sum_probs=124.8
Q ss_pred CeEEEEEcCCCCCEEEEE-ECCC----cEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCC----------
Q 007411 315 GVSAIRFFPKYGHLILSA-GMDT----KVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDK---------- 379 (604)
Q Consensus 315 ~V~~l~fsp~~g~~L~sg-s~Dg----~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg---------- 379 (604)
.+..++++|+ +++||.+ +..| .|+++|+ .+++.+....... ....+.|.++++.|+....+.
T Consensus 125 ~~~~~~~Spd-g~~la~~~s~~G~e~~~l~v~Dl-~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~ 201 (414)
T PF02897_consen 125 SLGGFSVSPD-GKRLAYSLSDGGSEWYTLRVFDL-ETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYP 201 (414)
T ss_dssp EEEEEEETTT-SSEEEEEEEETTSSEEEEEEEET-TTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCC
T ss_pred EeeeeeECCC-CCEEEEEecCCCCceEEEEEEEC-CCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCC
Confidence 3446789999 6666544 5445 4999999 5676554321111 122399999998887776543
Q ss_pred -cEEEEECCCCcE--EEEeeCCCcce-EEEEccCCCCCcEEEEEEcC---CeEEEEeCCCC-----ceEEEEcCcCCcee
Q 007411 380 -NIKYWDTETGQV--IRTFSTGKIPY-VVKLNPDDDKQNILLAGMSD---KKIVQWDMNTK-----EITQEYDQHLGAVN 447 (604)
Q Consensus 380 -~I~vWD~~t~~~--i~~~~~~~~~~-~~~~~~~~~~~~~lvsg~~d---g~I~iwD~~s~-----~~~~~~~~h~~~V~ 447 (604)
.|.+|.+.+... ...+....... .+.+..+.++..+++..... ..|++.|+..+ ..........+...
T Consensus 202 ~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~ 281 (414)
T PF02897_consen 202 RQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEY 281 (414)
T ss_dssp EEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EE
T ss_pred cEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEE
Confidence 378888877643 34444444333 44444444444445444443 45888899875 33333332333333
Q ss_pred EEEEeCCCCEEEEEe---CCCcEEEEECCCCeE---EEEeecCCCC--cccEEEEcCCCCEEEEEE-cCC--eEEEEEcC
Q 007411 448 TITFVDSNRRFVTSS---DDKSLRVWEFGIPVV---IKYISEPHMH--SMPSISLHPNTNWLAAQS-LDN--QILIYSTR 516 (604)
Q Consensus 448 ~i~~sp~~~~l~sgs---~Dg~I~iwdl~~~~~---~~~~~~~~~~--~v~~l~~sp~g~~l~s~s-~Dg--~I~iwd~~ 516 (604)
.+... .+.+++.+. ..+.|...++..... ...+. ++.. .+..+.. .+.+|+... .++ .|+++++.
T Consensus 282 ~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~-~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 282 YVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLI-PEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE---SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT
T ss_pred EEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEc-CCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECC
Confidence 34443 444444443 245677778877652 22332 3443 3444444 455555544 443 47788887
Q ss_pred CceeecccccccCcccccceEEEEEcCCCCEEEEE-c---CCCcEEEEeCCCCeeE
Q 007411 517 ERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSG-D---GEGKCWFWDWKSCKVF 568 (604)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sg-s---~dG~I~iwd~~t~~~~ 568 (604)
.+......... . .+.+..+...+++..+... + .-+.++.||+.+++..
T Consensus 358 ~~~~~~~~~~p-~---~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 358 DGKESREIPLP-E---AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp -TEEEEEEESS-S---SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred CCcEEeeecCC-c---ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 22222222211 1 1234445545555544322 2 2357888888887754
No 354
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.57 E-value=0.00045 Score=74.66 Aligned_cols=142 Identities=11% Similarity=0.089 Sum_probs=100.8
Q ss_pred CceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecc
Q 007411 444 GAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNK 523 (604)
Q Consensus 444 ~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~ 523 (604)
..|.--++...+.+++.|+.-|.|++|+-..+.....-.......+..++++++..++|.|+..|.|.++-+........
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~ 113 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL 113 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc
Confidence 33444455667889999999999999998777665554444455667778899999999999999999998876432222
Q ss_pred cccccCcc-cccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCC----eeEEEEecCCCcEEEEEEec
Q 007411 524 KKRFAGHI-VAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC----KVFRTLKCHEGVCIGCEWHP 585 (604)
Q Consensus 524 ~~~~~~~~-~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~----~~~~~l~~h~~~V~~v~~sp 585 (604)
...-..+. +...|++++|++++..+++|+..|+|.+-.+.+. ...+.+-.-.+.|..+....
T Consensus 114 ~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q 180 (726)
T KOG3621|consen 114 DYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ 180 (726)
T ss_pred eeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc
Confidence 21111111 2567999999999999999999999999888772 11222333456677776653
No 355
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.0036 Score=65.83 Aligned_cols=145 Identities=16% Similarity=0.237 Sum_probs=105.6
Q ss_pred CCCEEE-EEECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCc----EEEEEEcCCeEEEEeCCCCc--eEEEEc
Q 007411 368 DGTKFL-TASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQN----ILLAGMSDKKIVQWDMNTKE--ITQEYD 440 (604)
Q Consensus 368 dg~~L~-s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~----~lvsg~~dg~I~iwD~~s~~--~~~~~~ 440 (604)
+.++|+ ++.....|+-.|++.|+.+.....+..+..+.+.++..... --++|-++..|.-||+|-.. .+...+
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q 423 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ 423 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee
Confidence 444444 45555678889999999999998888877777777654322 25678889999999998432 222222
Q ss_pred CcC----CceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEc
Q 007411 441 QHL----GAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYST 515 (604)
Q Consensus 441 ~h~----~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~ 515 (604)
+|. ....|++-..+| +|++||.+|.|++||- .+...++...+...+|..+..+.+|++|++.+ +..+.+.++
T Consensus 424 ~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred ccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 222 235566665555 8999999999999996 66666666667888999999999999988766 566666664
No 356
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.51 E-value=0.087 Score=51.96 Aligned_cols=198 Identities=11% Similarity=0.070 Sum_probs=121.3
Q ss_pred cEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCC--eEEEEeCCCCceEEEEcCcC-CceeEEEEeCCCCEEEEEeCCCc
Q 007411 390 QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK--KIVQWDMNTKEITQEYDQHL-GAVNTITFVDSNRRFVTSSDDKS 466 (604)
Q Consensus 390 ~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg--~I~iwD~~s~~~~~~~~~h~-~~V~~i~~sp~~~~l~sgs~Dg~ 466 (604)
+.+.++.+......-.+....+ +.++-+.+.-| .|+.+|+.+++......-.. ----.++.. +++.+...-.++.
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~~-g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~ 111 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLDD-GTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGT 111 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEET-TEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSE
T ss_pred EEEEECCCCCcccCccEEecCC-CEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCe
Confidence 3455666555555544444211 25556666555 79999999998776553221 122344554 3456666778899
Q ss_pred EEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCC
Q 007411 467 LRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR 546 (604)
Q Consensus 467 I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~ 546 (604)
..+||..+.+.+..+.-+ ..-..++ .+++.|+.......|+++|..+-.....+........-..++-+.|- +|.
T Consensus 112 ~f~yd~~tl~~~~~~~y~--~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~ 186 (264)
T PF05096_consen 112 GFVYDPNTLKKIGTFPYP--GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGK 186 (264)
T ss_dssp EEEEETTTTEEEEEEE-S--SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTE
T ss_pred EEEEccccceEEEEEecC--CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCE
Confidence 999999999888887543 4556666 46778888888889999998765544444433332223345566665 566
Q ss_pred EEEEEcCCCcEEEEeCCCCeeEEEEec------------C---CCcEEEEEEecCCCCEEEEE
Q 007411 547 FVMSGDGEGKCWFWDWKSCKVFRTLKC------------H---EGVCIGCEWHPLEQSKVATC 594 (604)
Q Consensus 547 ~L~sgs~dG~I~iwd~~t~~~~~~l~~------------h---~~~V~~v~~sp~~~~~l~tg 594 (604)
..|=.=....|...|..+|+....+.. + ....+.++|.|..+.+++||
T Consensus 187 IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 187 IYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 666666677899999999999887742 1 24689999999777777776
No 357
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.50 E-value=0.072 Score=52.30 Aligned_cols=210 Identities=15% Similarity=0.117 Sum_probs=121.3
Q ss_pred eeeEEEccC-CCEEEEEECCCc-EEEEECCCCcEEEEeeCCCcce---EEEEccCCCCCcEEEEEEc-----CCeEEEEe
Q 007411 360 VRDISFCND-GTKFLTASYDKN-IKYWDTETGQVIRTFSTGKIPY---VVKLNPDDDKQNILLAGMS-----DKKIVQWD 429 (604)
Q Consensus 360 V~~l~fspd-g~~L~s~s~Dg~-I~vWD~~t~~~i~~~~~~~~~~---~~~~~~~~~~~~~lvsg~~-----dg~I~iwD 429 (604)
-..|+|+|. ..-++.+-.-|+ ..++|....+.+.++.....-. --.|++++ .+|++.-. -|.|-+||
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG---~~LYATEndfd~~rGViGvYd 146 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDG---RLLYATENDFDPNRGVIGVYD 146 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCC---cEEEeecCCCCCCCceEEEEe
Confidence 345777773 344555555444 5688988887766654433222 23455543 56666543 37899999
Q ss_pred CCCC-ceEEEEcCcCCceeEEEEeCCCCEEEEEeC------------------CCcEEEEECCCCeEEEEeecC---CCC
Q 007411 430 MNTK-EITQEYDQHLGAVNTITFVDSNRRFVTSSD------------------DKSLRVWEFGIPVVIKYISEP---HMH 487 (604)
Q Consensus 430 ~~s~-~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~------------------Dg~I~iwdl~~~~~~~~~~~~---~~~ 487 (604)
.+.+ +.+.++..|.-....+.+.+||+.++.+.. .-++.+.|..++..+.....+ +..
T Consensus 147 ~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~l 226 (366)
T COG3490 147 AREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQL 226 (366)
T ss_pred cccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhc
Confidence 9865 566778888888899999999999887642 113344444444444333322 445
Q ss_pred cccEEEEcCCCCEEEEEEcCCeE-----EEEEcCCceeecccccc--cCcccccceEEEEEcCCCCEEEEEc-CCCcEEE
Q 007411 488 SMPSISLHPNTNWLAAQSLDNQI-----LIYSTRERFQLNKKKRF--AGHIVAGYACQVNFSPDGRFVMSGD-GEGKCWF 559 (604)
Q Consensus 488 ~v~~l~~sp~g~~l~s~s~Dg~I-----~iwd~~~~~~~~~~~~~--~~~~~~~~v~~l~~spdg~~L~sgs-~dG~I~i 559 (604)
++..+...++|..++.|-..|.- .+=-...+..+..+..- .-.....++-+++.+.+..+++..+ ..+...+
T Consensus 227 SiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi 306 (366)
T COG3490 227 SIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVI 306 (366)
T ss_pred ceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEE
Confidence 67788888888766655433210 00000111111111000 0001235666788887666666555 4556789
Q ss_pred EeCCCCeeEEEEe
Q 007411 560 WDWKSCKVFRTLK 572 (604)
Q Consensus 560 wd~~t~~~~~~l~ 572 (604)
||..+|..+..-.
T Consensus 307 ~da~tG~vv~~a~ 319 (366)
T COG3490 307 WDAATGAVVSEAA 319 (366)
T ss_pred EEcCCCcEEeccc
Confidence 9999999876543
No 358
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.50 E-value=0.022 Score=58.98 Aligned_cols=171 Identities=6% Similarity=0.121 Sum_probs=99.6
Q ss_pred cEEEEecCCCCeeeEEecC-CCCceeeEE---EccC----CCEEEEEEC----------CCcEEEEECCCC-----cE--
Q 007411 337 KVKIWDVVNSGKCMRTYMG-HSKAVRDIS---FCND----GTKFLTASY----------DKNIKYWDTETG-----QV-- 391 (604)
Q Consensus 337 ~I~IWd~~~~~~~~~~~~~-h~~~V~~l~---fspd----g~~L~s~s~----------Dg~I~vWD~~t~-----~~-- 391 (604)
.|+|.|. .+.+.+.++.- ....+.+++ |..+ ..+|+.|.. .|.|.++++... +.
T Consensus 3 ~i~l~d~-~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 3 SIRLVDP-TTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp EEEEEET-TTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred EEEEEeC-CCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 4666666 34444444331 223344443 3322 356666643 288999999884 22
Q ss_pred EEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCc-eEEEEcC-cCCceeEEEEeCCCCEEEEEeCCCcEEE
Q 007411 392 IRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE-ITQEYDQ-HLGAVNTITFVDSNRRFVTSSDDKSLRV 469 (604)
Q Consensus 392 i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~-~~~~~~~-h~~~V~~i~~sp~~~~l~sgs~Dg~I~i 469 (604)
+........+.+++.. . ..++++ .++.|.+|++...+ ....-.. ....+.++... ++++++|..-..|.+
T Consensus 82 i~~~~~~g~V~ai~~~--~---~~lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~ 153 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF--N---GRLVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSL 153 (321)
T ss_dssp EEEEEESS-EEEEEEE--T---TEEEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEE
T ss_pred EEEEeecCcceEhhhh--C---CEEEEe-ecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEE
Confidence 2233334444444433 2 234444 35899999998877 4433321 22356666655 569999998898998
Q ss_pred EECCC-CeEEEEee-cCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 007411 470 WEFGI-PVVIKYIS-EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR 516 (604)
Q Consensus 470 wdl~~-~~~~~~~~-~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~ 516 (604)
+.++. ...+..+. ......++++.+-++++.++++..+|.|.++...
T Consensus 154 ~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 154 LRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 86553 33233332 3345568888888676799999999999999875
No 359
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.47 E-value=0.03 Score=58.79 Aligned_cols=244 Identities=16% Similarity=0.234 Sum_probs=121.1
Q ss_pred CCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCC----------------
Q 007411 335 DTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG---------------- 398 (604)
Q Consensus 335 Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~---------------- 398 (604)
.+.+.|+|+ .+++.. .+......+....|||+|+.++... ++.|.+++..++...+.-..+
T Consensus 22 ~~~y~i~d~-~~~~~~-~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEE 98 (353)
T PF00930_consen 22 KGDYYIYDI-ETGEIT-PLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEE 98 (353)
T ss_dssp EEEEEEEET-TTTEEE-ESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHH
T ss_pred ceeEEEEec-CCCceE-ECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceecccc
Confidence 467899999 444433 3333367889999999999998886 579999999888544332222
Q ss_pred --CcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCC---ceeEEEEeCCCCEEEEEeCCCcEEEEECC
Q 007411 399 --KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLG---AVNTITFVDSNRRFVTSSDDKSLRVWEFG 473 (604)
Q Consensus 399 --~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~---~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~ 473 (604)
.....+.|+|++. .+++.-..+..|..+.+. .+..... .+..+.+-.-|.-... -.+.|+|+.
T Consensus 99 v~~~~~~~~WSpd~~--~la~~~~d~~~v~~~~~~------~~~~~~~~yp~~~~~~YPk~G~~np~----v~l~v~~~~ 166 (353)
T PF00930_consen 99 VFDRRSAVWWSPDSK--YLAFLRFDEREVPEYPLP------DYSPPDSQYPEVESIRYPKAGDPNPR----VSLFVVDLA 166 (353)
T ss_dssp TSSSSBSEEE-TTSS--EEEEEEEE-TTS-EEEEE------EESSSTESS-EEEEEE--BTTS---E----EEEEEEESS
T ss_pred ccccccceEECCCCC--EEEEEEECCcCCceEEee------ccCCccccCCcccccccCCCCCcCCc----eEEEEEECC
Confidence 1123455666543 444444445444444321 1111111 2333443222222111 136678887
Q ss_pred CCeEEE-Eee---cCCCCcccEEEEcCCCCEEEEEEc--C---CeEEEEEcCCceeeccccc-ccCcccccceEEEEEc-
Q 007411 474 IPVVIK-YIS---EPHMHSMPSISLHPNTNWLAAQSL--D---NQILIYSTRERFQLNKKKR-FAGHIVAGYACQVNFS- 542 (604)
Q Consensus 474 ~~~~~~-~~~---~~~~~~v~~l~~sp~g~~l~s~s~--D---g~I~iwd~~~~~~~~~~~~-~~~~~~~~~v~~l~~s- 542 (604)
+++... ... .....-+..+.|.+++..|++.-. + -.+.++|..++........ ..+-. . ....+.|.
T Consensus 167 ~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv-~-~~~~~~~~~ 244 (353)
T PF00930_consen 167 SGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWV-D-VYDPPHFLG 244 (353)
T ss_dssp STCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSS-S-SSSEEEE-T
T ss_pred CCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcce-e-eeccccccc
Confidence 765432 111 234566889999999984444432 2 2355566655332211111 11111 1 11134443
Q ss_pred CC-CCEEEEEcCCCc--EEEEeCCCCeeEEEEecCCCcEEE-EEEecCCCCEEEEEeC
Q 007411 543 PD-GRFVMSGDGEGK--CWFWDWKSCKVFRTLKCHEGVCIG-CEWHPLEQSKVATCGW 596 (604)
Q Consensus 543 pd-g~~L~sgs~dG~--I~iwd~~t~~~~~~l~~h~~~V~~-v~~sp~~~~~l~tgg~ 596 (604)
++ +.+|.....+|. |++++...+.. ..+....-.|.. +.|.+.++.+.+++..
T Consensus 245 ~~~~~~l~~s~~~G~~hly~~~~~~~~~-~~lT~G~~~V~~i~~~d~~~~~iyf~a~~ 301 (353)
T PF00930_consen 245 PDGNEFLWISERDGYRHLYLYDLDGGKP-RQLTSGDWEVTSILGWDEDNNRIYFTANG 301 (353)
T ss_dssp TTSSEEEEEEETTSSEEEEEEETTSSEE-EESS-SSS-EEEEEEEECTSSEEEEEESS
T ss_pred CCCCEEEEEEEcCCCcEEEEEcccccce-eccccCceeecccceEcCCCCEEEEEecC
Confidence 54 445555556765 55566655553 344444445655 5677744545555554
No 360
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.42 E-value=0.12 Score=51.02 Aligned_cols=200 Identities=14% Similarity=0.173 Sum_probs=109.9
Q ss_pred EEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCC-CCceeeEEEccCCCEEEEEECCCcEEEEE
Q 007411 307 HTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGH-SKAVRDISFCNDGTKFLTASYDKNIKYWD 385 (604)
Q Consensus 307 ~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h-~~~V~~l~fspdg~~L~s~s~Dg~I~vWD 385 (604)
+.+.|-...|..|+|.|+.+.++++....+.|...+. .++.++.+.-. .+..-.|++..++.++++.-.++.+.+++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~--~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL--DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET--T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC--CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 4566767779999999986778888888888877776 57777776533 35678899987776666655689999998
Q ss_pred CCCCc------EEEEeeC------CCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCC---CceEEEE--------cCc
Q 007411 386 TETGQ------VIRTFST------GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT---KEITQEY--------DQH 442 (604)
Q Consensus 386 ~~t~~------~i~~~~~------~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s---~~~~~~~--------~~h 442 (604)
+.... ....+.. .....-+++.+.. +.|+++....-..+|.++. ...+... ...
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~---~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKT---NRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF 169 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTT---TEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCC---CEEEEEeCCCChhhEEEccccCccceeeccccccccccce
Confidence 84321 1122221 1223566776643 3455555555555555443 2211111 123
Q ss_pred CCceeEEEEeCCCC-EEEEEeCCCcEEEEECCCCeEEEEeecCC--------CCcccEEEEcCCCCEEEEEEcCCeEEEE
Q 007411 443 LGAVNTITFVDSNR-RFVTSSDDKSLRVWEFGIPVVIKYISEPH--------MHSMPSISLHPNTNWLAAQSLDNQILIY 513 (604)
Q Consensus 443 ~~~V~~i~~sp~~~-~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~--------~~~v~~l~~sp~g~~l~s~s~Dg~I~iw 513 (604)
...+.+++++|... +++.+..+..|.++| ..++.+..+.... ....-.|++.++|++.+ .+.-+..++|
T Consensus 170 ~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI-vsEpNlfy~f 247 (248)
T PF06977_consen 170 VRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI-VSEPNLFYRF 247 (248)
T ss_dssp SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE-EETTTEEEEE
T ss_pred eccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE-EcCCceEEEe
Confidence 44578999998754 556666677888888 5566655554322 12466899999886544 4566655554
No 361
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.41 E-value=0.15 Score=53.54 Aligned_cols=262 Identities=14% Similarity=0.185 Sum_probs=134.5
Q ss_pred CCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeE-EecC-------C---------CCceeeEEEccCCCEEEEE
Q 007411 313 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMR-TYMG-------H---------SKAVRDISFCNDGTKFLTA 375 (604)
Q Consensus 313 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~-~~~~-------h---------~~~V~~l~fspdg~~L~s~ 375 (604)
...+....|+|+ |+.|+-.. ++.|.+++.. .+...+ +..+ - -+.-..+.|||||++|+..
T Consensus 42 ~~~~~~~~~sP~-g~~~~~v~-~~nly~~~~~-~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~ 118 (353)
T PF00930_consen 42 PPKLQDAKWSPD-GKYIAFVR-DNNLYLRDLA-TGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFL 118 (353)
T ss_dssp ETTBSEEEE-SS-STEEEEEE-TTEEEEESST-TSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEE
T ss_pred ccccccceeecC-CCeeEEEe-cCceEEEECC-CCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEE
Confidence 677899999999 88887776 5789999873 443332 1212 0 1223578899999999987
Q ss_pred ECC-CcEEEEEC---CCCcEEEEeeCCCcceEEEEc-cCCCCCcEEEEEEcCCeEEEEeCCCCceEE-E-E---cCcCCc
Q 007411 376 SYD-KNIKYWDT---ETGQVIRTFSTGKIPYVVKLN-PDDDKQNILLAGMSDKKIVQWDMNTKEITQ-E-Y---DQHLGA 445 (604)
Q Consensus 376 s~D-g~I~vWD~---~t~~~i~~~~~~~~~~~~~~~-~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~-~-~---~~h~~~ 445 (604)
..| ..|..+.+ ..... ..+....+. |.....+ ..-.+.++|+.+++... . . ..-..-
T Consensus 119 ~~d~~~v~~~~~~~~~~~~~-------~yp~~~~~~YPk~G~~n------p~v~l~v~~~~~~~~~~~~~~~~~~~~~~y 185 (353)
T PF00930_consen 119 RFDEREVPEYPLPDYSPPDS-------QYPEVESIRYPKAGDPN------PRVSLFVVDLASGKTTELDPPNSLNPQDYY 185 (353)
T ss_dssp EEE-TTS-EEEEEEESSSTE-------SS-EEEEEE--BTTS---------EEEEEEEESSSTCCCEE---HHHHTSSEE
T ss_pred EECCcCCceEEeeccCCccc-------cCCcccccccCCCCCcC------CceEEEEEECCCCcEEEeeeccccCCCccC
Confidence 664 33333322 11110 011222221 1111111 11246678888876532 1 1 123456
Q ss_pred eeEEEEeCCCCEEEEEe--CCC---cEEEEECCCCeEEEEeecCCC---CcccEEEEc-CCCC-EEEEEEcCCeEE--EE
Q 007411 446 VNTITFVDSNRRFVTSS--DDK---SLRVWEFGIPVVIKYISEPHM---HSMPSISLH-PNTN-WLAAQSLDNQIL--IY 513 (604)
Q Consensus 446 V~~i~~sp~~~~l~sgs--~Dg---~I~iwdl~~~~~~~~~~~~~~---~~v~~l~~s-p~g~-~l~s~s~Dg~I~--iw 513 (604)
+..+.|.+++..|+..- .+. .+.++|..++........... .....+.+. +++. +|.....+|.-+ ++
T Consensus 186 l~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~ 265 (353)
T PF00930_consen 186 LTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLY 265 (353)
T ss_dssp EEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEE
T ss_pred cccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEE
Confidence 88999999998444432 222 466777766543322222122 223355554 5554 555555666544 45
Q ss_pred EcCCceeecccccccCcccccce-EEEEEcCCCCEEE-EEcC----CCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCC
Q 007411 514 STRERFQLNKKKRFAGHIVAGYA-CQVNFSPDGRFVM-SGDG----EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLE 587 (604)
Q Consensus 514 d~~~~~~~~~~~~~~~~~~~~~v-~~l~~spdg~~L~-sgs~----dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~ 587 (604)
+...+... ....|. -.| .-+.++++++.|+ ++.. ...|+.-++..+..+..|....+....+.|+|++
T Consensus 266 ~~~~~~~~---~lT~G~---~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg 339 (353)
T PF00930_consen 266 DLDGGKPR---QLTSGD---WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDG 339 (353)
T ss_dssp ETTSSEEE---ESS-SS---S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTS
T ss_pred ccccccee---ccccCc---eeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCC
Confidence 55544321 111121 223 2377888877664 5544 2356666777334445565444433689999955
Q ss_pred CCEEEEEeC
Q 007411 588 QSKVATCGW 596 (604)
Q Consensus 588 ~~~l~tgg~ 596 (604)
..++.+++.
T Consensus 340 ~y~v~~~s~ 348 (353)
T PF00930_consen 340 KYYVDTYSG 348 (353)
T ss_dssp SEEEEEEES
T ss_pred CEEEEEEcC
Confidence 555556654
No 362
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.41 E-value=0.063 Score=60.75 Aligned_cols=281 Identities=14% Similarity=0.168 Sum_probs=144.4
Q ss_pred CCCeEEEEEcCC--CCC---EEEEEECCCcEEEEecCCCCeeeEEe-cC---CCCceeeEEEccCCCEEEEEECCCcEEE
Q 007411 313 TKGVSAIRFFPK--YGH---LILSAGMDTKVKIWDVVNSGKCMRTY-MG---HSKAVRDISFCNDGTKFLTASYDKNIKY 383 (604)
Q Consensus 313 ~~~V~~l~fsp~--~g~---~L~sgs~Dg~I~IWd~~~~~~~~~~~-~~---h~~~V~~l~fspdg~~L~s~s~Dg~I~v 383 (604)
...|.|+.++|- +.+ +++.|..+..+.+--...+...+... .+ -...|.-.+|-.|..+|+++..||.+..
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~ 609 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY 609 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence 467999999975 233 88899887776665543333333222 11 1233444555557889999999999886
Q ss_pred EEC--CCCcEEEE--eeCCCcceEE-EEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEE-EEeC-C-C
Q 007411 384 WDT--ETGQVIRT--FSTGKIPYVV-KLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTI-TFVD-S-N 455 (604)
Q Consensus 384 WD~--~t~~~i~~--~~~~~~~~~~-~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i-~~sp-~-~ 455 (604)
+-+ .+|+.-.. ...+..+..+ .|.... . ..++ +.+|.-..+|.-+ ++++..-- .-..+..+ .|+. . .
T Consensus 610 fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~-~-t~vf-a~sdrP~viY~~n-~kLv~spl-s~kev~~~c~f~s~a~~ 684 (1096)
T KOG1897|consen 610 FVLDINTGQLSDRKKVTLGTQPISLRTFSSKS-R-TAVF-ALSDRPTVIYSSN-GKLVYSPL-SLKEVNHMCPFNSDAYP 684 (1096)
T ss_pred EEEEcccceEccccccccCCCCcEEEEEeeCC-c-eEEE-EeCCCCEEEEecC-CcEEEecc-chHHhhhhcccccccCC
Confidence 654 44443221 1223333333 333222 1 2233 3334444444433 22221110 01111112 1221 1 2
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcC--------------CeEEEEEcCCceee
Q 007411 456 RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD--------------NQILIYSTRERFQL 521 (604)
Q Consensus 456 ~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~D--------------g~I~iwd~~~~~~~ 521 (604)
..++++. .+.+++.-+..-+.+.....+.......+++.+....+++.+.- ..++++|-.+-..+
T Consensus 685 d~l~~~~-~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl 763 (1096)
T KOG1897|consen 685 DSLASAN-GGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVL 763 (1096)
T ss_pred ceEEEec-CCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEE
Confidence 2344443 46677776654333322223566778888888866555555421 23556665543222
Q ss_pred cccccccCcccccceEEEEEcCC-CCEEEEEcC----------CCcEEEEeCCCCeeEEEEec--CCCcEEEEEEecCCC
Q 007411 522 NKKKRFAGHIVAGYACQVNFSPD-GRFVMSGDG----------EGKCWFWDWKSCKVFRTLKC--HEGVCIGCEWHPLEQ 588 (604)
Q Consensus 522 ~~~~~~~~~~~~~~v~~l~~spd-g~~L~sgs~----------dG~I~iwd~~t~~~~~~l~~--h~~~V~~v~~sp~~~ 588 (604)
....+......-.++++.|..| +.++++|.. .|+|.+|.+..++.+..... -.+.|.++.-. ++
T Consensus 764 -~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f--ng 840 (1096)
T KOG1897|consen 764 -SSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF--NG 840 (1096)
T ss_pred -eeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh--CC
Confidence 2222333323345666778887 778888763 58899988876443333322 23455555433 45
Q ss_pred CEEEEEeCCCcEEEeC
Q 007411 589 SKVATCGWDGLIKYWD 604 (604)
Q Consensus 589 ~~l~tgg~DG~I~vWD 604 (604)
.+||.-+ ..|++|+
T Consensus 841 kllA~In--~~vrLye 854 (1096)
T KOG1897|consen 841 KLLAGIN--QSVRLYE 854 (1096)
T ss_pred eEEEecC--cEEEEEE
Confidence 5555443 4677653
No 363
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.39 E-value=0.00029 Score=66.64 Aligned_cols=141 Identities=11% Similarity=0.021 Sum_probs=87.2
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccce
Q 007411 457 RFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYA 536 (604)
Q Consensus 457 ~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v 536 (604)
.+...+.+|.|+-++++..+.......-+... .....-+..+++|+.+|.|.+|.............. . .....
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s--~-~e~i~ 105 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCS--G-EESID 105 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhc--c-cccce
Confidence 45667788999988886543322211111111 122224567999999999999987622111111111 1 01223
Q ss_pred EEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCC-CcEEEEEEecCCCCEEEEE--eCCCcEEEeC
Q 007411 537 CQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHE-GVCIGCEWHPLEQSKVATC--GWDGLIKYWD 604 (604)
Q Consensus 537 ~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~-~~V~~v~~sp~~~~~l~tg--g~DG~I~vWD 604 (604)
+.+.--.++.+.+++..+|.|+.|++.-.+.+.....|. .++.....+. ...+|+.+ |.|..++.||
T Consensus 106 ~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~-sd~~i~~a~~S~d~~~k~W~ 175 (238)
T KOG2444|consen 106 LGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVG-SDEFLKIADTSHDRVLKKWN 175 (238)
T ss_pred eccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEec-CCceEEeeccccchhhhhcc
Confidence 334444567789999999999999999999888887777 4555555554 45566666 7777777775
No 364
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.38 E-value=0.00044 Score=45.23 Aligned_cols=38 Identities=39% Similarity=0.740 Sum_probs=34.6
Q ss_pred ceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEe
Q 007411 304 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWD 342 (604)
Q Consensus 304 ~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd 342 (604)
+++..+..|...|.++.|++. +.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPD-GKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCC-CCEEEEecCCCeEEEcC
Confidence 567788899999999999998 79999999999999996
No 365
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.37 E-value=0.041 Score=52.45 Aligned_cols=221 Identities=14% Similarity=0.125 Sum_probs=122.5
Q ss_pred CCEEEEEECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEc-CCeEEEEeCC--CCceEEEEc-----
Q 007411 369 GTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMS-DKKIVQWDMN--TKEITQEYD----- 440 (604)
Q Consensus 369 g~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~-dg~I~iwD~~--s~~~~~~~~----- 440 (604)
+.++.+--..|.|.-||+.+.+..+.-.... +.+-.+.|.......+++++. .-.|.-||.. ......++.
T Consensus 27 ~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p-~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d 105 (310)
T KOG4499|consen 27 QSLLYVDIEAGEVHRYDIEQNKVYRAKIEGP-PSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPD 105 (310)
T ss_pred ceEEEEEeccCceehhhhhhhheEEEEEecC-cceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCch
Confidence 3344444456777779988866554433332 233333333333344555444 3445668743 223333321
Q ss_pred CcCCceeEEEEeCCCCEEEEEeC---------CCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEE-EEcCCeE
Q 007411 441 QHLGAVNTITFVDSNRRFVTSSD---------DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAA-QSLDNQI 510 (604)
Q Consensus 441 ~h~~~V~~i~~sp~~~~l~sgs~---------Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s-~s~Dg~I 510 (604)
......+.-..+|+|++++-.-. .|.++.|-..... ..+. ..-.--..++|+.+.+.+.. -+.+-.|
T Consensus 106 ~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v--~~i~-~~v~IsNgl~Wd~d~K~fY~iDsln~~V 182 (310)
T KOG4499|consen 106 RKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQV--ELIW-NCVGISNGLAWDSDAKKFYYIDSLNYEV 182 (310)
T ss_pred HHhcccccCccCCCCceeeeeeccccccccccccEEEEeccCCCc--eeee-hhccCCccccccccCcEEEEEccCceEE
Confidence 12345667778899988543322 2445555432221 1111 12223456788877765544 4566677
Q ss_pred EEEE--cCCceeecccccccCcc----cccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEe
Q 007411 511 LIYS--TRERFQLNKKKRFAGHI----VAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWH 584 (604)
Q Consensus 511 ~iwd--~~~~~~~~~~~~~~~~~----~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~s 584 (604)
.-|| ..++...++...+.-.. .....-.+++.-+|.+.++.-..|+|...|..+|+.+.+++-....|++++|-
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence 7777 44443322221111110 00111124556688888888889999999999999999999989999999997
Q ss_pred cCCCCEEEE
Q 007411 585 PLEQSKVAT 593 (604)
Q Consensus 585 p~~~~~l~t 593 (604)
..+-..|++
T Consensus 263 Gkn~d~~yv 271 (310)
T KOG4499|consen 263 GKNLDILYV 271 (310)
T ss_pred CCCccEEEE
Confidence 533344443
No 366
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.33 E-value=0.24 Score=50.41 Aligned_cols=272 Identities=13% Similarity=0.114 Sum_probs=126.7
Q ss_pred CCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecC--C---CCceeeEEEccCCCEEEEEECCCcEEEEECC
Q 007411 313 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMG--H---SKAVRDISFCNDGTKFLTASYDKNIKYWDTE 387 (604)
Q Consensus 313 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~--h---~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~ 387 (604)
...+..|.|... .+-+++|. .+.| +...+.++.-..... . .-...+|.|.. ...+++| ..+ +.+...+
T Consensus 16 ~~~l~dV~F~d~-~~G~~VG~-~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~-~~g~ivG-~~g-~ll~T~D 88 (302)
T PF14870_consen 16 DKPLLDVAFVDP-NHGWAVGA-YGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDG-NEGWIVG-EPG-LLLHTTD 88 (302)
T ss_dssp SS-EEEEEESSS-S-EEEEET-TTEE--EEESSTTSS-EE-----S-----EEEEEEEET-TEEEEEE-ETT-EEEEESS
T ss_pred CCceEEEEEecC-CEEEEEec-CCEE--EEECCCCccccccccCCCccceeeEEEEEecC-CceEEEc-CCc-eEEEecC
Confidence 457899999854 55555554 4543 444334432222111 1 12356777754 3344444 444 4455555
Q ss_pred CCcEEEEeeC----CCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCce-EEEEcCcCCceeEEEEeCCCCEEEEEe
Q 007411 388 TGQVIRTFST----GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI-TQEYDQHLGAVNTITFVDSNRRFVTSS 462 (604)
Q Consensus 388 t~~~i~~~~~----~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~-~~~~~~h~~~V~~i~~sp~~~~l~sgs 462 (604)
.|+.-..+.. ...+..+.... + ..+...+..|.|+.= ...|+. ......-.+.+..+..+++++++++++
T Consensus 89 gG~tW~~v~l~~~lpgs~~~i~~l~--~--~~~~l~~~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~ 163 (302)
T PF14870_consen 89 GGKTWERVPLSSKLPGSPFGITALG--D--GSAELAGDRGAIYRT-TDGGKTWQAVVSETSGSINDITRSSDGRYVAVSS 163 (302)
T ss_dssp TTSS-EE----TT-SS-EEEEEEEE--T--TEEEEEETT--EEEE-SSTTSSEEEEE-S----EEEEEE-TTS-EEEEET
T ss_pred CCCCcEEeecCCCCCCCeeEEEEcC--C--CcEEEEcCCCcEEEe-CCCCCCeeEcccCCcceeEeEEECCCCcEEEEEC
Confidence 5554333322 11222222221 1 123333444544332 222322 222344557788999999999888887
Q ss_pred CCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCC-ceeecccccccCcccccceEEEEE
Q 007411 463 DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE-RFQLNKKKRFAGHIVAGYACQVNF 541 (604)
Q Consensus 463 ~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~v~~l~~ 541 (604)
.-..+.-||-....-...- ......|..|.|.|++.+.+++ ..|.|++=+... ..... ..........-.+..++|
T Consensus 164 ~G~~~~s~~~G~~~w~~~~-r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~-~~~~~~~~~~~~~ld~a~ 240 (302)
T PF14870_consen 164 RGNFYSSWDPGQTTWQPHN-RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWS-EPIIPIKTNGYGILDLAY 240 (302)
T ss_dssp TSSEEEEE-TT-SS-EEEE---SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE----B-TTSS--S-EEEEEE
T ss_pred cccEEEEecCCCccceEEc-cCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccc-cccCCcccCceeeEEEEe
Confidence 6555667886543222222 2356789999999998766644 888888876222 22211 111111122233788999
Q ss_pred cCCCCEEEEEcCCCcEEEEeCCCCeeEEEEec---CCCcEEEEEEecCCCCEEEEEeCCCcEEEe
Q 007411 542 SPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC---HEGVCIGCEWHPLEQSKVATCGWDGLIKYW 603 (604)
Q Consensus 542 spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~---h~~~V~~v~~sp~~~~~l~tgg~DG~I~vW 603 (604)
.+++...++|+. |.| +.....|+.-...+. -...+..+.|.+ . ..-...|.+|.|.-|
T Consensus 241 ~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~-~-~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 241 RPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVN-P-DKGFVLGQDGVLLRY 301 (302)
T ss_dssp SSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEE-T-TEEEEE-STTEEEEE
T ss_pred cCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEEcC-C-CceEEECCCcEEEEe
Confidence 999877776654 433 444566766655543 234578888876 3 355666779988766
No 367
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.31 E-value=0.00084 Score=43.82 Aligned_cols=39 Identities=33% Similarity=0.617 Sum_probs=34.3
Q ss_pred CeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007411 565 CKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 565 ~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
++++..+..|...|.++.|++ ...++++++.||.|++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 456777888999999999999 568999999999999997
No 368
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.31 E-value=0.0096 Score=67.54 Aligned_cols=142 Identities=15% Similarity=0.216 Sum_probs=96.2
Q ss_pred cEEEEE-EcCCeEEEEeCCCCceEEEEcCcCCc-eeEEEEeC-----CCCEEEEEeCCCcEEEEECCCCe--EEEEe--e
Q 007411 414 NILLAG-MSDKKIVQWDMNTKEITQEYDQHLGA-VNTITFVD-----SNRRFVTSSDDKSLRVWEFGIPV--VIKYI--S 482 (604)
Q Consensus 414 ~~lvsg-~~dg~I~iwD~~s~~~~~~~~~h~~~-V~~i~~sp-----~~~~l~sgs~Dg~I~iwdl~~~~--~~~~~--~ 482 (604)
++|+.. .....|+..|+..|+++..+..|... |..++-.. .....+.|-.+..|..||.|... .+... .
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~ 573 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ 573 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccc
Confidence 344433 45688999999999999999887754 55554321 12345667778889999998643 22111 1
Q ss_pred cCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeC
Q 007411 483 EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 562 (604)
Q Consensus 483 ~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~ 562 (604)
-.......|++-+.+| +||+|+.+|.|++||-.. ......+.+. ..+|..|..+.||++|++.+ +..|.|++.
T Consensus 574 Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g---~~AKT~lp~l--G~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 574 YSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLG---KRAKTALPGL--GDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred cccCCCceEEEecCCc-eEEEEeCCCcEEeecccc---hhhhhcCCCC--CCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 1234457777777666 799999999999999432 2223334443 57899999999999998776 446777764
No 369
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.30 E-value=0.11 Score=53.06 Aligned_cols=216 Identities=13% Similarity=0.171 Sum_probs=123.8
Q ss_pred EEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeC--
Q 007411 320 RFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST-- 397 (604)
Q Consensus 320 ~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~-- 397 (604)
.|.++.+.++.+--..+.|.-|+.. +++ .+.+. +...+.++..-..+..|+++.. -+.+++.+++..+..+..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~-~g~-~~~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPE-TGK-KRVFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCC-cCc-eEEEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEecccc
Confidence 4777755577777778888888873 232 22232 3334455555555556666543 466777766665333221
Q ss_pred ----CCcceEEEEccCCCCCcEEEEEEcC------------CeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEE
Q 007411 398 ----GKIPYVVKLNPDDDKQNILLAGMSD------------KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTS 461 (604)
Q Consensus 398 ----~~~~~~~~~~~~~~~~~~lvsg~~d------------g~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sg 461 (604)
.....-..+.+++ . +.++... |.|+.+|. .+..+..+..+...-+.|+|+|+++.|+.+
T Consensus 106 ~~~~~~r~ND~~v~pdG---~-~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~a 180 (307)
T COG3386 106 DGLPLNRPNDGVVDPDG---R-IWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVA 180 (307)
T ss_pred CCCCcCCCCceeEcCCC---C-EEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEE
Confidence 1222334444443 2 3333322 44666665 566666777777778999999999877766
Q ss_pred eC-CCcEEEEECCC------CeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCC-eEEEEEcCCceeecccccccCcccc
Q 007411 462 SD-DKSLRVWEFGI------PVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN-QILIYSTRERFQLNKKKRFAGHIVA 533 (604)
Q Consensus 462 s~-Dg~I~iwdl~~------~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg-~I~iwd~~~~~~~~~~~~~~~~~~~ 533 (604)
.. .+.|.-|++.. ............+..-.++...+|.+.+++..+| .|.+|+.. +..+.....- .
T Consensus 181 DT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP-----~ 254 (307)
T COG3386 181 DTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLP-----V 254 (307)
T ss_pred eCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECC-----C
Confidence 54 47788887752 1111222223456677888888898876555554 89999887 4444333221 1
Q ss_pred cceEEEEE-cCCCCEEEEE
Q 007411 534 GYACQVNF-SPDGRFVMSG 551 (604)
Q Consensus 534 ~~v~~l~~-spdg~~L~sg 551 (604)
..+++++| .|+.+.|++.
T Consensus 255 ~~~t~~~FgG~~~~~L~iT 273 (307)
T COG3386 255 KRPTNPAFGGPDLNTLYIT 273 (307)
T ss_pred CCCccceEeCCCcCEEEEE
Confidence 33445555 3444554433
No 370
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.29 E-value=0.019 Score=48.66 Aligned_cols=104 Identities=14% Similarity=0.217 Sum_probs=74.9
Q ss_pred eEEEEEcC---CCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEE
Q 007411 316 VSAIRFFP---KYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVI 392 (604)
Q Consensus 316 V~~l~fsp---~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i 392 (604)
|++|+++. ++.+-|++|+.|..|+||+- ...+..+.. ...|++++-... ..|+.+..+|+|-+|+- ...+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~---~e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG---DEIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC---CcEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeC--ccee
Confidence 66777765 33478999999999999974 456666653 456777776655 67999999999999975 4566
Q ss_pred EEeeCCCcceEEEE-ccCCCCCcEEEEEEcCCeEE
Q 007411 393 RTFSTGKIPYVVKL-NPDDDKQNILLAGMSDKKIV 426 (604)
Q Consensus 393 ~~~~~~~~~~~~~~-~~~~~~~~~lvsg~~dg~I~ 426 (604)
.+.+..+.+.++.+ ..+.+....|++|-++|.|-
T Consensus 75 WRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 WRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 66666666655544 44445556799999999874
No 371
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.29 E-value=0.034 Score=60.64 Aligned_cols=137 Identities=9% Similarity=0.082 Sum_probs=89.8
Q ss_pred EcCCCCCEEEEEECCCcEEEEecCCCCee-eEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcE-----EEE
Q 007411 321 FFPKYGHLILSAGMDTKVKIWDVVNSGKC-MRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQV-----IRT 394 (604)
Q Consensus 321 fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~-~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~-----i~~ 394 (604)
+... +.+|+.|+.-|.+.+|+- ..+.. .....+-.+.+..++.+++..++|.|+..|.|.++-+..+.. +..
T Consensus 41 ~dst-~~~l~~GsS~G~lyl~~R-~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~ 118 (726)
T KOG3621|consen 41 VDAT-EEYLAMGSSAGSVYLYNR-HTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTP 118 (726)
T ss_pred eecC-CceEEEecccceEEEEec-CchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeecc
Confidence 3444 889999999999999997 33332 223333555667778888888899999999999998876432 222
Q ss_pred eeC--CCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCC----ceEEEEcCcCCceeEEEEeCCCCEEEEEeC
Q 007411 395 FST--GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK----EITQEYDQHLGAVNTITFVDSNRRFVTSSD 463 (604)
Q Consensus 395 ~~~--~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~----~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~ 463 (604)
... +..+.++.|..+. ..+++|...|+|.+-.+.+. ...+.+....+.|..|... ++..|++...
T Consensus 119 ~d~~~~~rVTal~Ws~~~---~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVStl~ 189 (726)
T KOG3621|consen 119 CDKSHKCRVTALEWSKNG---MKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVSTLT 189 (726)
T ss_pred ccccCCceEEEEEecccc---cEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHhhhh
Confidence 222 2334555555543 67999999999999888762 1233333445667677665 3344444443
No 372
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.25 E-value=0.11 Score=51.39 Aligned_cols=196 Identities=14% Similarity=0.239 Sum_probs=113.4
Q ss_pred ceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCc-CCceeEEEEeCCCCEEEEEeCCCcEEEEECCCC----
Q 007411 401 PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQH-LGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP---- 475 (604)
Q Consensus 401 ~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h-~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~---- 475 (604)
...+.+.++ .+.++++....+.|..++. +|+++..+.-. .+..-.|++..++.++++.-.++.+.++++...
T Consensus 24 ~SGLTy~pd--~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~ 100 (248)
T PF06977_consen 24 LSGLTYNPD--TGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSL 100 (248)
T ss_dssp EEEEEEETT--TTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT-
T ss_pred ccccEEcCC--CCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecccccc
Confidence 455666664 3478888888999999997 47888777543 356788999887766666656899999998321
Q ss_pred --eEEEEee----cCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCC---ceeec--cccccc-CcccccceEEEEEcC
Q 007411 476 --VVIKYIS----EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE---RFQLN--KKKRFA-GHIVAGYACQVNFSP 543 (604)
Q Consensus 476 --~~~~~~~----~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~---~~~~~--~~~~~~-~~~~~~~v~~l~~sp 543 (604)
.....+. ..+...+-.++|+|.++.|+++-...-..+|.+.. ...+. ....+. ......-+..++++|
T Consensus 101 ~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p 180 (248)
T PF06977_consen 101 DRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDP 180 (248)
T ss_dssp -EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEET
T ss_pred chhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcC
Confidence 1112222 12445689999999988888888777777777654 11111 001111 011122356788988
Q ss_pred C-CCEEEEEcCCCcEEEEeCCCCeeEEEEecCC---------CcEEEEEEecCCCCEEEEEeCCCcEEE
Q 007411 544 D-GRFVMSGDGEGKCWFWDWKSCKVFRTLKCHE---------GVCIGCEWHPLEQSKVATCGWDGLIKY 602 (604)
Q Consensus 544 d-g~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~---------~~V~~v~~sp~~~~~l~tgg~DG~I~v 602 (604)
. |.+++.++....|..+| .+|+++..+.-.. ...-+|+|.+ ++. |...+.-+...+
T Consensus 181 ~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~-~G~-LYIvsEpNlfy~ 246 (248)
T PF06977_consen 181 RTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP-DGN-LYIVSEPNLFYR 246 (248)
T ss_dssp TTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-T-T---EEEEETTTEEEE
T ss_pred CCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECC-CCC-EEEEcCCceEEE
Confidence 5 56777788888999999 7888877665332 2357899998 554 444455444443
No 373
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.23 E-value=0.023 Score=61.16 Aligned_cols=141 Identities=14% Similarity=0.084 Sum_probs=79.4
Q ss_pred CcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCcee
Q 007411 441 QHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQ 520 (604)
Q Consensus 441 ~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~ 520 (604)
...-....+.++|+++.+++++ +|.-.|+......... .+.-..++|.+++ .+|+-...+.|.|+.--....
T Consensus 30 ~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~------~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~ 101 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKA------FGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEV 101 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEE------EEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-T
T ss_pred CCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCcccc------cCceeEEEEecCc-cEEEEECCCeEEEEEcCcccc
Confidence 3445578999999999988854 6878888744333322 2345678899854 577777788899974222111
Q ss_pred ecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcE
Q 007411 521 LNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLI 600 (604)
Q Consensus 521 ~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I 600 (604)
. +.+... ..+..+-. |.+|...+.+ .|.+||+.+++.++.+... +|..+.|++ ++.+++..+.+ .|
T Consensus 102 ~---k~i~~~---~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~-~g~~val~t~~-~i 167 (443)
T PF04053_consen 102 V---KSIKLP---FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSD-DGELVALVTKD-SI 167 (443)
T ss_dssp T--------S---S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-T-TSSEEEEE-S--SE
T ss_pred c---eEEcCC---cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEEC-CCCEEEEEeCC-eE
Confidence 1 111111 11222322 7777776544 8999999999999999854 389999999 67788888765 45
Q ss_pred EEe
Q 007411 601 KYW 603 (604)
Q Consensus 601 ~vW 603 (604)
.|+
T Consensus 168 ~il 170 (443)
T PF04053_consen 168 YIL 170 (443)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 374
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.0017 Score=69.62 Aligned_cols=80 Identities=21% Similarity=0.263 Sum_probs=71.8
Q ss_pred CCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCcee-eEEEccCCCEEEEEECCCcEEEEECCCCcE
Q 007411 313 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVR-DISFCNDGTKFLTASYDKNIKYWDTETGQV 391 (604)
Q Consensus 313 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~-~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~ 391 (604)
...|.-+.|+|. -.++|.+..+|.|.+..+ + .+.+.++.-|...++ +++|.|||+.|+.|-.||+|++.|++++..
T Consensus 20 ~~~i~~~ewnP~-~dLiA~~t~~gelli~R~-n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 20 PINIKRIEWNPK-MDLIATRTEKGELLIHRL-N-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred ccceEEEEEcCc-cchhheeccCCcEEEEEe-c-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence 345788999999 999999999999999998 3 777888887888888 999999999999999999999999999988
Q ss_pred EEEe
Q 007411 392 IRTF 395 (604)
Q Consensus 392 i~~~ 395 (604)
+..+
T Consensus 97 l~~~ 100 (665)
T KOG4640|consen 97 LVSF 100 (665)
T ss_pred eecc
Confidence 8773
No 375
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.05 E-value=0.004 Score=70.50 Aligned_cols=100 Identities=15% Similarity=0.230 Sum_probs=71.6
Q ss_pred CCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcce--E
Q 007411 326 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPY--V 403 (604)
Q Consensus 326 g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~--~ 403 (604)
+..++.|+..|.|...|+..+-.+...-..-.++|++++|+.+|.+++.|-.+|.|.+||+.+++.++.+..+..+. +
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v 178 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV 178 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence 56788999999999998832222222223346789999999999999999999999999999999988887654443 2
Q ss_pred EEEccCCCCCcEEEEEEcCCeEE
Q 007411 404 VKLNPDDDKQNILLAGMSDKKIV 426 (604)
Q Consensus 404 ~~~~~~~~~~~~lvsg~~dg~I~ 426 (604)
+.....+ +...++++...|.++
T Consensus 179 i~v~~t~-~nS~llt~D~~Gsf~ 200 (1206)
T KOG2079|consen 179 IFVGRTS-QNSKLLTSDTGGSFW 200 (1206)
T ss_pred EEEEEeC-CCcEEEEccCCCceE
Confidence 2222222 234688887777643
No 376
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.04 E-value=0.43 Score=54.41 Aligned_cols=276 Identities=13% Similarity=0.130 Sum_probs=150.8
Q ss_pred eEEEEEcCCCCCEEEEEECCCcEEEEecCC-CCeee--EEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEE
Q 007411 316 VSAIRFFPKYGHLILSAGMDTKVKIWDVVN-SGKCM--RTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVI 392 (604)
Q Consensus 316 V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~-~~~~~--~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i 392 (604)
|.-..|--+ .++|+++..||.+.-+-+.. ++..- +...--..++.--.|+..++.-+.|..|+-..+|.-+..-+.
T Consensus 586 Il~~~~e~d-~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~ 664 (1096)
T KOG1897|consen 586 ILLTTFEGD-IHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVY 664 (1096)
T ss_pred eeeEEeecc-ceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEE
Confidence 333344444 78999999999988776632 22211 111123456666677776655555556677777765433333
Q ss_pred EEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCc--eEEEEcCcCCceeEEEEeCCCCEEEEEeCC------
Q 007411 393 RTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE--ITQEYDQHLGAVNTITFVDSNRRFVTSSDD------ 464 (604)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~--~~~~~~~h~~~V~~i~~sp~~~~l~sgs~D------ 464 (604)
..+........+.++.+.-. . .++....+.+.+.-+..-+ .++++. -......+++.+....+.+.+.-
T Consensus 665 spls~kev~~~c~f~s~a~~-d-~l~~~~~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~~sl~~~v~s~r~e~~~~ 741 (1096)
T KOG1897|consen 665 SPLSLKEVNHMCPFNSDAYP-D-SLASANGGALTIGTIDEIQKLHIRTVP-LGESPRRICYQESSLTFGVLSNRIESSAE 741 (1096)
T ss_pred eccchHHhhhhcccccccCC-c-eEEEecCCceEEEEecchhhcceeeec-CCCChhheEecccceEEEEEecccccchh
Confidence 33333333333444333222 1 2223334556655443221 122222 23345566666644444443321
Q ss_pred --------CcEEEEECCCCeEEEEeecCCCC---cccEEEEcCC-CCEEEEEEc----------CCeEEEEEcCCceeec
Q 007411 465 --------KSLRVWEFGIPVVIKYISEPHMH---SMPSISLHPN-TNWLAAQSL----------DNQILIYSTRERFQLN 522 (604)
Q Consensus 465 --------g~I~iwdl~~~~~~~~~~~~~~~---~v~~l~~sp~-g~~l~s~s~----------Dg~I~iwd~~~~~~~~ 522 (604)
..++++|-++.+.+......... ++.++.|..+ +.++++|.. .|.|.+|.......+
T Consensus 742 ~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L- 820 (1096)
T KOG1897|consen 742 YYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSL- 820 (1096)
T ss_pred hcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCce-
Confidence 13667776665555443322222 3444557766 677777762 488888887663222
Q ss_pred ccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEE
Q 007411 523 KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKY 602 (604)
Q Consensus 523 ~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~v 602 (604)
.....+...+.+.++..- +|++||+- +..|++|+|.+.+.++.-..|..++..+...- .+..++.|..=+.|.+
T Consensus 821 --~~v~e~~v~Gav~aL~~f-ngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v-~gdeI~VgDlm~Sitl 894 (1096)
T KOG1897|consen 821 --ELVAETVVKGAVYALVEF-NGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQV-KGDEIAVGDLMRSITL 894 (1096)
T ss_pred --eeeeeeeeccceeehhhh-CCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEEEe-cCcEEEEeeccceEEE
Confidence 333333334444444321 56666544 45899999999977776667777888887776 6677887776555543
No 377
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.03 E-value=0.31 Score=52.29 Aligned_cols=231 Identities=11% Similarity=0.097 Sum_probs=117.1
Q ss_pred ceeeEEEccCCCEEEEE-ECCC----cEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcC----------C
Q 007411 359 AVRDISFCNDGTKFLTA-SYDK----NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD----------K 423 (604)
Q Consensus 359 ~V~~l~fspdg~~L~s~-s~Dg----~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~d----------g 423 (604)
.+..+.++|+|++|+.+ +..| .|+++|+.+|+.+...-.......+.|..++. .++.+...+ .
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~--~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGK--GFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSS--EEEEEECSTTTSS-CCGCCE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCC--EEEEEEeCcccccccCCCCc
Confidence 34467899999988855 4444 49999999998765432222222366666432 445554332 3
Q ss_pred eEEEEeCCCCce--EEEEcCcCCc--eeEEEEeCCCCEEEEEeCC----CcEEEEECCCC----eEEEEeecCCCCcccE
Q 007411 424 KIVQWDMNTKEI--TQEYDQHLGA--VNTITFVDSNRRFVTSSDD----KSLRVWEFGIP----VVIKYISEPHMHSMPS 491 (604)
Q Consensus 424 ~I~iwD~~s~~~--~~~~~~h~~~--V~~i~~sp~~~~l~sgs~D----g~I~iwdl~~~----~~~~~~~~~~~~~v~~ 491 (604)
.|+.|.+.+... ...+...... ...+..++++++|+..+.. ..+.+.++... .....+.. ....+..
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~-~~~~~~~ 281 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSP-REDGVEY 281 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEE-SSSS-EE
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeC-CCCceEE
Confidence 488888877632 2444433333 5678889999987754332 34788888764 22333332 2223333
Q ss_pred EEEcCCCCEEEEEEc---CCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEE-EEcCCC--cEEEEeCCCC
Q 007411 492 ISLHPNTNWLAAQSL---DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVM-SGDGEG--KCWFWDWKSC 565 (604)
Q Consensus 492 l~~sp~g~~l~s~s~---Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~-sgs~dG--~I~iwd~~t~ 565 (604)
..-+..+.+++.... .+.|...++...........+..+.....+..+.. .+.+|+ ....++ .|+++++..+
T Consensus 282 ~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~~ 359 (414)
T PF02897_consen 282 YVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLDDG 359 (414)
T ss_dssp EEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT-T
T ss_pred EEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECCCC
Confidence 332334444444332 35676677765442111112222221223433433 344444 433443 6889998845
Q ss_pred eeEEEEec-CCCcEEEEEEecCCCCEEEEE
Q 007411 566 KVFRTLKC-HEGVCIGCEWHPLEQSKVATC 594 (604)
Q Consensus 566 ~~~~~l~~-h~~~V~~v~~sp~~~~~l~tg 594 (604)
.....+.. -.+.|..+...+....+.++.
T Consensus 360 ~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ 389 (414)
T PF02897_consen 360 KESREIPLPEAGSVSGVSGDFDSDELRFSY 389 (414)
T ss_dssp EEEEEEESSSSSEEEEEES-TT-SEEEEEE
T ss_pred cEEeeecCCcceEEeccCCCCCCCEEEEEE
Confidence 55555543 334456665555444444443
No 378
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.01 E-value=0.021 Score=60.33 Aligned_cols=141 Identities=14% Similarity=0.210 Sum_probs=96.8
Q ss_pred cEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCE-------EEEEeCCCcEEEEECCCCeE-EEEeecC-
Q 007411 414 NILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRR-------FVTSSDDKSLRVWEFGIPVV-IKYISEP- 484 (604)
Q Consensus 414 ~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~-------l~sgs~Dg~I~iwdl~~~~~-~~~~~~~- 484 (604)
-++..+.....|+..|+..|+++.+..-+.. |+-+.+.|+... -+.|-.+..|+-||.+.... .....+.
T Consensus 347 lil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~k 425 (644)
T KOG2395|consen 347 LILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSK 425 (644)
T ss_pred eEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecc
Confidence 4566677778999999999999999987766 777788776432 34566788899999874332 1111111
Q ss_pred ---CCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEe
Q 007411 485 ---HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 561 (604)
Q Consensus 485 ---~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd 561 (604)
......|++-..+| +|++||.+|.|++||-.. . .....+++. ...|..+..+.+|++|++.+ +..|.+.+
T Consensus 426 qy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~-~--~AKTAlPgL--G~~I~hVdvtadGKwil~Tc-~tyLlLi~ 498 (644)
T KOG2395|consen 426 QYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIG-R--RAKTALPGL--GDAIKHVDVTADGKWILATC-KTYLLLID 498 (644)
T ss_pred ccccccccceeeecCCc-eEEEeecCCcEEeehhhh-h--hhhhccccc--CCceeeEEeeccCcEEEEec-ccEEEEEE
Confidence 23345566655554 899999999999999632 1 222334444 56788899999999988765 44666665
Q ss_pred C
Q 007411 562 W 562 (604)
Q Consensus 562 ~ 562 (604)
+
T Consensus 499 t 499 (644)
T KOG2395|consen 499 T 499 (644)
T ss_pred E
Confidence 4
No 379
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.01 E-value=0.0014 Score=62.01 Aligned_cols=144 Identities=14% Similarity=0.157 Sum_probs=90.3
Q ss_pred EEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcceEEEEc
Q 007411 328 LILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLN 407 (604)
Q Consensus 328 ~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~ 407 (604)
+|..-+.||.|+-+++..-....+.-.-|...-..+. -+..+++|+.+|.|.+|...-..............+.+..
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~---~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I 108 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRVVT---ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI 108 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcceeecc---cCceEEeecccceEEEecCCccchHHHhhhcccccceecc
Confidence 4445566777777776322222222222222212222 3457899999999999998732222222222333344555
Q ss_pred cCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcC-CceeEEEEeCCCCEEEEE--eCCCcEEEEECCC
Q 007411 408 PDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHL-GAVNTITFVDSNRRFVTS--SDDKSLRVWEFGI 474 (604)
Q Consensus 408 ~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~-~~V~~i~~sp~~~~l~sg--s~Dg~I~iwdl~~ 474 (604)
|......+..+++.+|.|+.|++.-++.+.....|. .++..+..+..++.+.++ |.|..++.|++..
T Consensus 109 p~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 109 PNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 656666799999999999999999888887777777 556666666666666666 6777777777643
No 380
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.95 E-value=0.45 Score=47.76 Aligned_cols=218 Identities=14% Similarity=0.117 Sum_probs=114.4
Q ss_pred cCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEE-------
Q 007411 367 NDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY------- 439 (604)
Q Consensus 367 pdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~------- 439 (604)
..++.|+.|+.+| |.++++..............+..+.+.+.- +.+++- .|+.|+++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~---~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPEL---NLLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEeccc---CEEEEE-cCCccEEEEchhhccccccccccccc
Confidence 3578899999888 899998333322222222224445555432 233333 4599999998765433311
Q ss_pred -------cCcCCceeEEE--EeCCCCEEEEEeCCCcEEEEECCCC-----eEEEEeecCCCCcccEEEEcCCCCEEEEEE
Q 007411 440 -------DQHLGAVNTIT--FVDSNRRFVTSSDDKSLRVWEFGIP-----VVIKYISEPHMHSMPSISLHPNTNWLAAQS 505 (604)
Q Consensus 440 -------~~h~~~V~~i~--~sp~~~~l~sgs~Dg~I~iwdl~~~-----~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s 505 (604)
......+..++ -...+...++....+.|.+|.+... ...+.+. ....+..++|. ++.|+++.
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~--lp~~~~~i~~~--~~~i~v~~ 155 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS--LPDPPSSIAFL--GNKICVGT 155 (275)
T ss_pred cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE--cCCCcEEEEEe--CCEEEEEe
Confidence 11223344444 1233444445555568999888653 3445554 34678888888 66677776
Q ss_pred cCCeEEEEEcCCceeecccccccCc--------ccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEE--EEecCC
Q 007411 506 LDNQILIYSTRERFQLNKKKRFAGH--------IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFR--TLKCHE 575 (604)
Q Consensus 506 ~Dg~I~iwd~~~~~~~~~~~~~~~~--------~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~--~l~~h~ 575 (604)
.++ ..+.|+.++...... ..... ....++..+.. +++.+|++-+ ..-.+.| ..|+..+ .+.= .
T Consensus 156 ~~~-f~~idl~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~~--~~g~fv~-~~G~~~r~~~i~W-~ 228 (275)
T PF00780_consen 156 SKG-FYLIDLNTGSPSELL-DPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCYD--NIGVFVN-KNGEPSRKSTIQW-S 228 (275)
T ss_pred CCc-eEEEecCCCCceEEe-CccCCcchhhhcccCCCceEEEEe-CCceEEEEec--ceEEEEc-CCCCcCcccEEEc-C
Confidence 444 778888754332111 11110 01122322333 3456776543 3333444 3444332 3332 2
Q ss_pred CcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007411 576 GVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 576 ~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
..+.++++.. .+|+..+.+ .|.||+
T Consensus 229 ~~p~~~~~~~---pyli~~~~~-~iEV~~ 253 (275)
T PF00780_consen 229 SAPQSVAYSS---PYLIAFSSN-SIEVRS 253 (275)
T ss_pred CchhEEEEEC---CEEEEECCC-EEEEEE
Confidence 2445666643 367776654 488774
No 381
>PHA02713 hypothetical protein; Provisional
Probab=96.93 E-value=0.11 Score=58.16 Aligned_cols=199 Identities=10% Similarity=0.011 Sum_probs=98.4
Q ss_pred CCCEEEEEECC------CcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCC-----eEEEEeCCCCceE
Q 007411 368 DGTKFLTASYD------KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK-----KIVQWDMNTKEIT 436 (604)
Q Consensus 368 dg~~L~s~s~D------g~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg-----~I~iwD~~s~~~~ 436 (604)
++..++.||.+ ..+..||..++.....-.............. ++.+.+.|+.++ .+..||..+.+-.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI--DDTIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE--CCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 66777777754 3477888877654322211111111111111 236777777653 4788998876432
Q ss_pred EE--EcCcCCceeEEEEeCCCCEEEEEeCCC-----------------------cEEEEECCCCeEEEEeecCCCCcccE
Q 007411 437 QE--YDQHLGAVNTITFVDSNRRFVTSSDDK-----------------------SLRVWEFGIPVVIKYISEPHMHSMPS 491 (604)
Q Consensus 437 ~~--~~~h~~~V~~i~~sp~~~~l~sgs~Dg-----------------------~I~iwdl~~~~~~~~~~~~~~~~v~~ 491 (604)
.. +.........+. -++...+.|+.++ ++..||..+..-...-..+....-.+
T Consensus 381 ~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~ 458 (557)
T PHA02713 381 MLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPG 458 (557)
T ss_pred ECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCc
Confidence 21 111111111122 2577777777543 46678876654332211111111122
Q ss_pred EEEcCCCCEEEEEEcC------CeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCC--cEEEEeCC
Q 007411 492 ISLHPNTNWLAAQSLD------NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG--KCWFWDWK 563 (604)
Q Consensus 492 l~~sp~g~~l~s~s~D------g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG--~I~iwd~~ 563 (604)
++ .-++++.++|+.+ ..+..||..+.........+...... ...+.+ +|++.++|+.+| .+..||..
T Consensus 459 ~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~--~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~ 533 (557)
T PHA02713 459 VV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA--LHTILH--DNTIMMLHCYESYMLQDTFNVY 533 (557)
T ss_pred EE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc--ceeEEE--CCEEEEEeeecceeehhhcCcc
Confidence 22 2256667777654 24677887751112222222222111 111222 778888998888 67778877
Q ss_pred CCeeEEEEecCC
Q 007411 564 SCKVFRTLKCHE 575 (604)
Q Consensus 564 t~~~~~~l~~h~ 575 (604)
+.+-...-..|.
T Consensus 534 ~~~W~~~~~~~~ 545 (557)
T PHA02713 534 TYEWNHICHQHS 545 (557)
T ss_pred cccccchhhhcC
Confidence 665443333344
No 382
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.93 E-value=0.064 Score=45.47 Aligned_cols=100 Identities=12% Similarity=0.214 Sum_probs=70.2
Q ss_pred eeeEEEcc-CC---CEEEEEECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCce
Q 007411 360 VRDISFCN-DG---TKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI 435 (604)
Q Consensus 360 V~~l~fsp-dg---~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~ 435 (604)
|++|++.. ++ +.|++||.|..|++|+-+ ..+..+.....+..++-... ..|+.+..+|+|-+|+-.. .
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~----~~F~Y~l~NGTVGvY~~~~--R 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGG----GRFAYALANGTVGVYDRSQ--R 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCC----CEEEEEecCCEEEEEeCcc--e
Confidence 66777765 22 589999999999999754 67777777666666555543 4699999999999997632 3
Q ss_pred EEEEcCcCCceeEEEEeCCC----CEEEEEeCCCcEE
Q 007411 436 TQEYDQHLGAVNTITFVDSN----RRFVTSSDDKSLR 468 (604)
Q Consensus 436 ~~~~~~h~~~V~~i~~sp~~----~~l~sgs~Dg~I~ 468 (604)
+...+. ...++++.+.+-. ..|++|-.+|.|-
T Consensus 74 lWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 74 LWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 334443 2336777666433 2688888888764
No 383
>PHA02713 hypothetical protein; Provisional
Probab=96.85 E-value=0.08 Score=59.13 Aligned_cols=182 Identities=9% Similarity=0.050 Sum_probs=90.2
Q ss_pred cEEEEEEcC------CeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCC-----cEEEEECCCCeEEEEee
Q 007411 414 NILLAGMSD------KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDK-----SLRVWEFGIPVVIKYIS 482 (604)
Q Consensus 414 ~~lvsg~~d------g~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg-----~I~iwdl~~~~~~~~~~ 482 (604)
.++++|+.+ ..+..||+.+..-...-.-....-......-++...+.|+.++ ++..||..+..-...-.
T Consensus 305 ~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~ 384 (557)
T PHA02713 305 EIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPD 384 (557)
T ss_pred EEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCC
Confidence 567777753 3578899887753221111111111112223577778887654 47889987664332211
Q ss_pred cCCCCcccEEEEcCCCCEEEEEEcCC-----------------------eEEEEEcCCceeecccccccCcccccceEEE
Q 007411 483 EPHMHSMPSISLHPNTNWLAAQSLDN-----------------------QILIYSTRERFQLNKKKRFAGHIVAGYACQV 539 (604)
Q Consensus 483 ~~~~~~v~~l~~sp~g~~l~s~s~Dg-----------------------~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l 539 (604)
.+....-.+++ .-+++..+.|+.++ .+..||..+..= .....+.... .....+
T Consensus 385 mp~~r~~~~~~-~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W-~~v~~m~~~r--~~~~~~ 460 (557)
T PHA02713 385 MPIALSSYGMC-VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIW-ETLPNFWTGT--IRPGVV 460 (557)
T ss_pred CCcccccccEE-EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeE-eecCCCCccc--ccCcEE
Confidence 11111111222 22677777776542 467787765421 1111111111 111112
Q ss_pred EEcCCCCEEEEEcCC------CcEEEEeCCC---CeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCC--cEEEeC
Q 007411 540 NFSPDGRFVMSGDGE------GKCWFWDWKS---CKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDG--LIKYWD 604 (604)
Q Consensus 540 ~~spdg~~L~sgs~d------G~I~iwd~~t---~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG--~I~vWD 604 (604)
.-+|++.+.|+.+ ..+..||..+ ...+..+.........+.+ ++.+.++||.|| .+-.||
T Consensus 461 --~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~---~~~iyv~Gg~~~~~~~e~yd 531 (557)
T PHA02713 461 --SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH---DNTIMMLHCYESYMLQDTFN 531 (557)
T ss_pred --EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE---CCEEEEEeeecceeehhhcC
Confidence 2256666677654 2467888776 3344444433333333333 567889999888 444443
No 384
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.84 E-value=0.061 Score=57.65 Aligned_cols=188 Identities=16% Similarity=0.161 Sum_probs=106.3
Q ss_pred CCCCCeEEEEEcCCCCCEEEEEECC---CcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEE-CCCc--EEEE
Q 007411 311 GHTKGVSAIRFFPKYGHLILSAGMD---TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTAS-YDKN--IKYW 384 (604)
Q Consensus 311 gH~~~V~~l~fsp~~g~~L~sgs~D---g~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s-~Dg~--I~vW 384 (604)
.-...+..-+|+|++..+....-.. ..+.++++ +.++....+. ..+.-..-+|+|||+.|+.+. .||. |.+.
T Consensus 190 ~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l-~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~ 267 (425)
T COG0823 190 DSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDL-NTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLM 267 (425)
T ss_pred ccCcceeccccCcCCCceEEEEEecCCCceEEEEec-cCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEE
Confidence 3344566677888833333332222 35888998 4443333222 233334678999999887554 4554 6666
Q ss_pred ECCCCcEEEEeeCCC-cceEEEEccCCCCCcEEEEEEcCCe--EEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEE
Q 007411 385 DTETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKK--IVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTS 461 (604)
Q Consensus 385 D~~t~~~i~~~~~~~-~~~~~~~~~~~~~~~~lvsg~~dg~--I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sg 461 (604)
|+.++...+ +.... ....-.++|++ ..++++.+..|. |.++++..+.. ..+....+.-..-.|+|+|++|+..
T Consensus 268 dl~~~~~~~-Lt~~~gi~~~Ps~spdG--~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~ 343 (425)
T COG0823 268 DLDGKNLPR-LTNGFGINTSPSWSPDG--SKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFE 343 (425)
T ss_pred cCCCCccee-cccCCccccCccCCCCC--CEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEE
Confidence 777776433 33322 22233445544 366666666664 66667666654 3333334433478899999999887
Q ss_pred eCC-Cc--EEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEc
Q 007411 462 SDD-KS--LRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL 506 (604)
Q Consensus 462 s~D-g~--I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~ 506 (604)
+.. |. |.+.|+........+. .......-++.++++.+...+.
T Consensus 344 ~~~~g~~~i~~~~~~~~~~~~~lt--~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 344 SSSGGQWDIDKNDLASGGKIRILT--STYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred eccCCceeeEEeccCCCCcEEEcc--ccccCCCCCcCCCCceEEEecc
Confidence 743 44 6666665554333332 3333445567778777665543
No 385
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.82 E-value=0.36 Score=55.54 Aligned_cols=237 Identities=13% Similarity=0.169 Sum_probs=120.6
Q ss_pred CCEEEEEECCCcEEEEecCCCCeeeEEecCCCC--------ceeeEEEcc----------------CCCEEEEEECCCcE
Q 007411 326 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSK--------AVRDISFCN----------------DGTKFLTASYDKNI 381 (604)
Q Consensus 326 g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~--------~V~~l~fsp----------------dg~~L~s~s~Dg~I 381 (604)
+..|+.++.++.|.-.|. .+++.+..+..... ..+.+++.. .+.+++.++.|+.|
T Consensus 194 gg~lYv~t~~~~V~ALDa-~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L 272 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDA-ATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL 272 (764)
T ss_pred CCEEEEECCCCeEEEEEC-CCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence 456777777778877787 56776666543221 112233321 34578889999999
Q ss_pred EEEECCCCcEEEEeeCCCcce-------------EEEEccCCCCCcEEEEEEc----------CCeEEEEeCCCCceEEE
Q 007411 382 KYWDTETGQVIRTFSTGKIPY-------------VVKLNPDDDKQNILLAGMS----------DKKIVQWDMNTKEITQE 438 (604)
Q Consensus 382 ~vWD~~t~~~i~~~~~~~~~~-------------~~~~~~~~~~~~~lvsg~~----------dg~I~iwD~~s~~~~~~ 438 (604)
.-.|.++|+.+..+....... .....|.-. ...+++|+. +|.|+-+|.++|+++..
T Consensus 273 iALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~-~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~ 351 (764)
T TIGR03074 273 IALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVA-GTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA 351 (764)
T ss_pred EEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEE-CCEEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence 999999999998775432210 001111101 135666643 68999999999999888
Q ss_pred EcCcCCceeEEEEeCCCCEEEEEeCCC-cEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 007411 439 YDQHLGAVNTITFVDSNRRFVTSSDDK-SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE 517 (604)
Q Consensus 439 ~~~h~~~V~~i~~sp~~~~l~sgs~Dg-~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~ 517 (604)
+..-....+.. .+.+.....++.+. ....+|...+....-. ....+ .+....+........+.|.-.|+.+
T Consensus 352 ~~~g~p~~~~~--~~~g~~~~~gg~n~W~~~s~D~~~glvy~pt--Gn~~p----d~~g~~r~~~~n~y~~slvALD~~T 423 (764)
T TIGR03074 352 WDPGNPDPTAP--PAPGETYTRNTPNSWSVASYDEKLGLVYLPM--GNQTP----DQWGGDRTPADEKYSSSLVALDATT 423 (764)
T ss_pred EecCCCCcccC--CCCCCEeccCCCCccCceEEcCCCCeEEEeC--CCccc----cccCCccccCcccccceEEEEeCCC
Confidence 75311111110 11233322222211 2333443333322111 11100 0000000000011234455556655
Q ss_pred ceeecccccccCcc----cccceEEEEEcC-CCC---EEEEEcCCCcEEEEeCCCCeeEEEEe
Q 007411 518 RFQLNKKKRFAGHI----VAGYACQVNFSP-DGR---FVMSGDGEGKCWFWDWKSCKVFRTLK 572 (604)
Q Consensus 518 ~~~~~~~~~~~~~~----~~~~v~~l~~sp-dg~---~L~sgs~dG~I~iwd~~t~~~~~~l~ 572 (604)
++..-..+...... ......-+.+.. +|+ .|+.++.+|.++++|..+|+++...+
T Consensus 424 Gk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 424 GKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred CceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 54443332211000 001111133333 563 78999999999999999999887654
No 386
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.81 E-value=0.4 Score=47.38 Aligned_cols=198 Identities=13% Similarity=0.147 Sum_probs=117.6
Q ss_pred eeeEEecC-CCCceeeEEEccCCCEEEEEECCC--cEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCe
Q 007411 348 KCMRTYMG-HSKAVRDISFCNDGTKFLTASYDK--NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKK 424 (604)
Q Consensus 348 ~~~~~~~~-h~~~V~~l~fspdg~~L~s~s~Dg--~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~ 424 (604)
+.+.++.. ...-...+.|..+|.++-+.+.-| .|+.+|+.+++.+...........-.+...++ .++...-.++.
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d--~l~qLTWk~~~ 111 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD--KLYQLTWKEGT 111 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT--EEEEEESSSSE
T ss_pred EEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC--EEEEEEecCCe
Confidence 34445442 233456788877888888888766 79999999999888776655433222222222 56777778899
Q ss_pred EEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecC-CCC---cccEEEEcCCCCE
Q 007411 425 IVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEP-HMH---SMPSISLHPNTNW 500 (604)
Q Consensus 425 I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~-~~~---~v~~l~~sp~g~~ 500 (604)
..+||..+.+.+.++.- .+.-..++ .++..|+.+.....|+++|..+....+.+.-. ... .++-+.+. +|..
T Consensus 112 ~f~yd~~tl~~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~I 187 (264)
T PF05096_consen 112 GFVYDPNTLKKIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKI 187 (264)
T ss_dssp EEEEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEE
T ss_pred EEEEccccceEEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEE
Confidence 99999999988888753 34556666 35667777777788999998877666665432 111 24445554 5655
Q ss_pred EEEEEcCCeEEEEEcCCceeeccccc--c--------cCcccccceEEEEEcCCCCE-EEEE
Q 007411 501 LAAQSLDNQILIYSTRERFQLNKKKR--F--------AGHIVAGYACQVNFSPDGRF-VMSG 551 (604)
Q Consensus 501 l~s~s~Dg~I~iwd~~~~~~~~~~~~--~--------~~~~~~~~v~~l~~spdg~~-L~sg 551 (604)
.|=.=....|...|..++.....+.. + ..+......+.|++.|.+.. +++|
T Consensus 188 yANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 188 YANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 55555667777777777654332110 0 00111345778999886554 4555
No 387
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.62 E-value=0.86 Score=48.46 Aligned_cols=42 Identities=24% Similarity=0.272 Sum_probs=37.2
Q ss_pred ceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCC
Q 007411 535 YACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEG 576 (604)
Q Consensus 535 ~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~ 576 (604)
.+.+++.+|++++.++.++-|+|.++|+.++..++.+++-.+
T Consensus 309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRd 350 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRD 350 (415)
T ss_pred eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCcc
Confidence 366799999999999999999999999999999888887655
No 388
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.55 E-value=0.26 Score=55.14 Aligned_cols=189 Identities=8% Similarity=0.057 Sum_probs=103.2
Q ss_pred CCCCceeeEEEccCCCEEEEEE------CCC--cEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEE-------
Q 007411 355 GHSKAVRDISFCNDGTKFLTAS------YDK--NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAG------- 419 (604)
Q Consensus 355 ~h~~~V~~l~fspdg~~L~s~s------~Dg--~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg------- 419 (604)
+....+.+.+++|+|+.++... .|. .|.+++.. +.. ..+..+.....-.|.+++. .+.+.
T Consensus 347 g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~~~t~PsWspDG~---~lw~v~dg~~~~ 421 (591)
T PRK13616 347 GQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGHSLTRPSWSLDAD---AVWVVVDGNTVV 421 (591)
T ss_pred ccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCCCCCCceECCCCC---ceEEEecCcceE
Confidence 3345688999999999887665 244 45555542 222 3333333345556666532 12221
Q ss_pred -----EcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEE---EECCCCe-EE---EEeecCCCC
Q 007411 420 -----MSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRV---WEFGIPV-VI---KYISEPHMH 487 (604)
Q Consensus 420 -----~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~i---wdl~~~~-~~---~~~~~~~~~ 487 (604)
...+.+.+.++..++... ...+.|..+.|+|+|.+++... ++.|.+ -....+. .+ ..+......
T Consensus 422 ~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~ 497 (591)
T PRK13616 422 RVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGD 497 (591)
T ss_pred EEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCC
Confidence 123456666666555433 3456799999999999988776 477776 3333332 11 112222333
Q ss_pred cccEEEEcCCCCEEEEEEcCCeEEEEE--cCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEE
Q 007411 488 SMPSISLHPNTNWLAAQSLDNQILIYS--TRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWF 559 (604)
Q Consensus 488 ~v~~l~~sp~g~~l~s~s~Dg~I~iwd--~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~i 559 (604)
.+..+.|..++.++ ++..++...+|. +...... .+.+......+..++-++. -|+..+.+|.+.+
T Consensus 498 ~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~----~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~l 564 (591)
T PRK13616 498 TAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSD----ALPSRNLSAPVVAVAASPS--TVYVTDARAVLQL 564 (591)
T ss_pred ccccceEecCCEEE-EEecCCCCceEEEecCCcccc----ccCCCCccCceEEEecCCc--eEEEEcCCceEEe
Confidence 46889999988855 555555444554 3322111 1122212344555666653 4666667774444
No 389
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.49 E-value=0.26 Score=55.11 Aligned_cols=228 Identities=13% Similarity=0.120 Sum_probs=115.1
Q ss_pred CCEEEEEECCC------cEEEEecCCCCe--eeEEecCCCCceeeEEEccCCCEEEEEECC------CcEEEEECCCCcE
Q 007411 326 GHLILSAGMDT------KVKIWDVVNSGK--CMRTYMGHSKAVRDISFCNDGTKFLTASYD------KNIKYWDTETGQV 391 (604)
Q Consensus 326 g~~L~sgs~Dg------~I~IWd~~~~~~--~~~~~~~h~~~V~~l~fspdg~~L~s~s~D------g~I~vWD~~t~~~ 391 (604)
+.+++.||.++ .+..+|.. .+. .+..+. +...-.+++.. ++...++|+.| .++..||..+++.
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~-~~~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W 361 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPK-TNEWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQW 361 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCC-cCcEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCce
Confidence 56777777763 56777773 331 111122 22223334443 56788899988 3577888887775
Q ss_pred EEEeeCCCcceEEEEccCCCCCcEEEEEEcCC-----eEEEEeCCCCceEEEEcCcCCceeEE-EEeCCCCEEEEEeCCC
Q 007411 392 IRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK-----KIVQWDMNTKEITQEYDQHLGAVNTI-TFVDSNRRFVTSSDDK 465 (604)
Q Consensus 392 i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg-----~I~iwD~~s~~~~~~~~~h~~~V~~i-~~sp~~~~l~sgs~Dg 465 (604)
...-.............. ++.+.++|+.|| +|-.||..+.+-...-.-.. ...+. ...-++...++|+.++
T Consensus 362 ~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~~g~iYi~GG~~~ 438 (571)
T KOG4441|consen 362 TPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVLGGKLYIIGGGDG 438 (571)
T ss_pred eccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCCCCc-ceeeeEEEEECCEEEEEcCcCC
Confidence 442222222222222221 236788888886 46778887664322211111 11111 2223677788887554
Q ss_pred ------cEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCe-----EEEEEcCCceeecccccccCccccc
Q 007411 466 ------SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQ-----ILIYSTRERFQLNKKKRFAGHIVAG 534 (604)
Q Consensus 466 ------~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~-----I~iwd~~~~~~~~~~~~~~~~~~~~ 534 (604)
++..||..+..-...-.......-..++. -++.+.++|+.|+. |..||..+..-. ............
T Consensus 439 ~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~-~v~~m~~~rs~~ 516 (571)
T KOG4441|consen 439 SSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWT-MVAPMTSPRSAV 516 (571)
T ss_pred CccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECCccCCCccceEEEEcCCCCcee-EcccCccccccc
Confidence 46777776654433221111111222222 26777888887763 666777654321 111111111111
Q ss_pred ceEEEEEcCCCCEEEEEcCCC-----cEEEEeCCCC
Q 007411 535 YACQVNFSPDGRFVMSGDGEG-----KCWFWDWKSC 565 (604)
Q Consensus 535 ~v~~l~~spdg~~L~sgs~dG-----~I~iwd~~t~ 565 (604)
.+ + .-++...++|+.+| +|..||..+.
T Consensus 517 g~--~--~~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 517 GV--V--VLGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred cE--E--EECCEEEEEecccCccccceeEEcCCCCC
Confidence 11 1 12566777787766 3556665443
No 390
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.42 E-value=0.16 Score=56.92 Aligned_cols=175 Identities=18% Similarity=0.147 Sum_probs=93.7
Q ss_pred CCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEe------CCC--cEEEEECCCCeEEEEeecCCCCcccEEE
Q 007411 422 DKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSS------DDK--SLRVWEFGIPVVIKYISEPHMHSMPSIS 493 (604)
Q Consensus 422 dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs------~Dg--~I~iwdl~~~~~~~~~~~~~~~~v~~l~ 493 (604)
+|.+.-.+-..-..+....+....+....++|+++.++... .|. .|.+++..... ..+... .....-.
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~--~~lt~g--~~~t~Ps 403 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA--VQVLEG--HSLTRPS 403 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc--eeeecC--CCCCCce
Confidence 66665554332222222223334678899999999887665 243 45555653222 333222 2478889
Q ss_pred EcCCCCEEEEEEcCCe-EEEEEcCCceeecccccccCc---ccccceEEEEEcCCCCEEEEEcCCCcEEE---EeCCCCe
Q 007411 494 LHPNTNWLAAQSLDNQ-ILIYSTRERFQLNKKKRFAGH---IVAGYACQVNFSPDGRFVMSGDGEGKCWF---WDWKSCK 566 (604)
Q Consensus 494 ~sp~g~~l~s~s~Dg~-I~iwd~~~~~~~~~~~~~~~~---~~~~~v~~l~~spdg~~L~sgs~dG~I~i---wd~~t~~ 566 (604)
|+|+|..|++.+..+. +++.+......+.....-.+. ...+.|..+.|||||..|+... +|.|++ -....|.
T Consensus 404 WspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~ 482 (591)
T PRK13616 404 WSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ 482 (591)
T ss_pred ECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc
Confidence 9999988887764322 222221111111100000000 1134588899999999988765 578877 4444454
Q ss_pred e-E---EEEe-cCCCcEEEEEEecCCCCEEEEEeCCCcEEEe
Q 007411 567 V-F---RTLK-CHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 603 (604)
Q Consensus 567 ~-~---~~l~-~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vW 603 (604)
. + ..+. .-...+.++.|.+ ++.+ +.+..++.-.+|
T Consensus 483 ~~l~~~~~l~~~l~~~~~~l~W~~-~~~L-~V~~~~~~~~v~ 522 (591)
T PRK13616 483 YALTNPREVGPGLGDTAVSLDWRT-GDSL-VVGRSDPEHPVW 522 (591)
T ss_pred eeecccEEeecccCCccccceEec-CCEE-EEEecCCCCceE
Confidence 1 1 1122 2233468899998 5554 455554444343
No 391
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.36 E-value=1.7 Score=45.81 Aligned_cols=194 Identities=16% Similarity=0.233 Sum_probs=95.3
Q ss_pred CCCEEEEEE-CCCcEEEEECCCC----cEEEEeeC--------CCcceEEEEccCCCCCcEEEEEEc------CCeEEEE
Q 007411 368 DGTKFLTAS-YDKNIKYWDTETG----QVIRTFST--------GKIPYVVKLNPDDDKQNILLAGMS------DKKIVQW 428 (604)
Q Consensus 368 dg~~L~s~s-~Dg~I~vWD~~t~----~~i~~~~~--------~~~~~~~~~~~~~~~~~~lvsg~~------dg~I~iw 428 (604)
+.++|+..+ ..+.|.|.|+.+. +..+.+.. -..+..+-+.++ +.+++++.. -|.+.++
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~---G~imIS~lGd~~G~g~Ggf~ll 162 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPD---GRIMISALGDADGNGPGGFVLL 162 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS-----EEEEEEEETTS-S--EEEEE
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCC---ccEEEEeccCCCCCCCCcEEEE
Confidence 455677666 5788999999743 34444432 012223333332 346666533 3678899
Q ss_pred eCCCCceEEEEcCcCC---ceeEEEEeCCCCEEEEEe--------------------CCCcEEEEECCCCeEEEEeecCC
Q 007411 429 DMNTKEITQEYDQHLG---AVNTITFVDSNRRFVTSS--------------------DDKSLRVWEFGIPVVIKYISEPH 485 (604)
Q Consensus 429 D~~s~~~~~~~~~h~~---~V~~i~~sp~~~~l~sgs--------------------~Dg~I~iwdl~~~~~~~~~~~~~ 485 (604)
|-.+.++........+ --..+-+.|..+.++|+. ...+|.+||+...+.++.+..+.
T Consensus 163 D~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~ 242 (461)
T PF05694_consen 163 DGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGE 242 (461)
T ss_dssp -TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-T
T ss_pred cCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCC
Confidence 9988888777754332 345678889888888874 24579999999999999998765
Q ss_pred CCc-ccEEEEcC--CCCE-EEEEEcCCeEEEEEc-CCce-eecccccccC-----c----------ccccceEEEEEcCC
Q 007411 486 MHS-MPSISLHP--NTNW-LAAQSLDNQILIYST-RERF-QLNKKKRFAG-----H----------IVAGYACQVNFSPD 544 (604)
Q Consensus 486 ~~~-v~~l~~sp--~g~~-l~s~s~Dg~I~iwd~-~~~~-~~~~~~~~~~-----~----------~~~~~v~~l~~spd 544 (604)
.+. ...+.|.. +..+ ++.+....+|..|-- ..+. .......+.. - .....++.|.+|.|
T Consensus 243 ~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlD 322 (461)
T PF05694_consen 243 EGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLD 322 (461)
T ss_dssp TEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TT
T ss_pred CCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccC
Confidence 543 44566654 4443 344445555665543 2221 1111111111 0 01355789999999
Q ss_pred CCEEEEEc-CCCcEEEEeCCC
Q 007411 545 GRFVMSGD-GEGKCWFWDWKS 564 (604)
Q Consensus 545 g~~L~sgs-~dG~I~iwd~~t 564 (604)
.++|...+ ..|.|+.||+..
T Consensus 323 DrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 323 DRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp S-EEEEEETTTTEEEEEE-SS
T ss_pred CCEEEEEcccCCcEEEEecCC
Confidence 99998766 689999999975
No 392
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.018 Score=62.07 Aligned_cols=93 Identities=6% Similarity=0.012 Sum_probs=75.4
Q ss_pred cceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCcee-EEEEeCCCCEEEEEeCCCcEEEEECCCCeEE
Q 007411 400 IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVN-TITFVDSNRRFVTSSDDKSLRVWEFGIPVVI 478 (604)
Q Consensus 400 ~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~-~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~ 478 (604)
....+.|+|.- .+++.+..+|.|.+..+. .+.+.++.-|...++ +++|.|+|+.|++|-.||+|++.|..++..+
T Consensus 22 ~i~~~ewnP~~---dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 22 NIKRIEWNPKM---DLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ceEEEEEcCcc---chhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 34455666643 589999999999999988 667778877777777 9999999999999999999999999999887
Q ss_pred EEeecCCCCcccEEEEcC
Q 007411 479 KYISEPHMHSMPSISLHP 496 (604)
Q Consensus 479 ~~~~~~~~~~v~~l~~sp 496 (604)
..........|.++.|.+
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 774444566788888864
No 393
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.30 E-value=0.017 Score=65.66 Aligned_cols=99 Identities=19% Similarity=0.322 Sum_probs=77.0
Q ss_pred CCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCC
Q 007411 496 PNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHE 575 (604)
Q Consensus 496 p~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~ 575 (604)
-.+.+++.|+..|.|..+|....-. ....+....++|++++|+.+|.+++.|-.+|.|.+||+..++.++.+..|.
T Consensus 97 ~~~~~ivi~Ts~ghvl~~d~~~nL~----~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ 172 (1206)
T KOG2079|consen 97 IVVVPIVIGTSHGHVLLSDMTGNLG----PLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHG 172 (1206)
T ss_pred eeeeeEEEEcCchhhhhhhhhcccc----hhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecC
Confidence 3566789999999999998876421 123444457889999999999999999999999999999999999998776
Q ss_pred CcEEEE---EEecCCCCEEEEEeCCCc
Q 007411 576 GVCIGC---EWHPLEQSKVATCGWDGL 599 (604)
Q Consensus 576 ~~V~~v---~~sp~~~~~l~tgg~DG~ 599 (604)
.+.+++ .+.. +++.++++..-|.
T Consensus 173 ap~t~vi~v~~t~-~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 173 APVTGVIFVGRTS-QNSKLLTSDTGGS 198 (1206)
T ss_pred CccceEEEEEEeC-CCcEEEEccCCCc
Confidence 655444 4444 4557888877775
No 394
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.16 E-value=0.15 Score=56.93 Aligned_cols=218 Identities=11% Similarity=0.064 Sum_probs=112.9
Q ss_pred CCCEEEEEECC------CcEEEEECCCCcEEEEeeCC--CcceEEEEccCCCCCcEEEEEEcC------CeEEEEeCCCC
Q 007411 368 DGTKFLTASYD------KNIKYWDTETGQVIRTFSTG--KIPYVVKLNPDDDKQNILLAGMSD------KKIVQWDMNTK 433 (604)
Q Consensus 368 dg~~L~s~s~D------g~I~vWD~~t~~~i~~~~~~--~~~~~~~~~~~~~~~~~lvsg~~d------g~I~iwD~~s~ 433 (604)
.+.+++.|+.+ ..+..+|..++......... .....+++.. +.++++|+.+ ..+..||.+++
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~----~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLN----GKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEEC----CEEEEEccccCCCcccceEEEecCCCC
Confidence 34556666665 46778888887554433322 2222333322 2688888888 46788898887
Q ss_pred ceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCc-----EEEEECCCCeEEEEeecCCCCcccEE-EEcCCCCEEEEEEcC
Q 007411 434 EITQEYDQHLGAVNTITFVDSNRRFVTSSDDKS-----LRVWEFGIPVVIKYISEPHMHSMPSI-SLHPNTNWLAAQSLD 507 (604)
Q Consensus 434 ~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~-----I~iwdl~~~~~~~~~~~~~~~~v~~l-~~sp~g~~l~s~s~D 507 (604)
+-...-.-.......-...-+|...++|+.||. |-.||..+.+-...- +......+. ...-+|.+.++|+.+
T Consensus 360 ~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va--~m~~~r~~~gv~~~~g~iYi~GG~~ 437 (571)
T KOG4441|consen 360 QWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA--PMLTRRSGHGVAVLGGKLYIIGGGD 437 (571)
T ss_pred ceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccC--CCCcceeeeEEEEECCEEEEEcCcC
Confidence 633311111111111111126778889988864 667776654432221 111122222 222367777888755
Q ss_pred C------eEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCc-----EEEEeCCCCee--EEEEecC
Q 007411 508 N------QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGK-----CWFWDWKSCKV--FRTLKCH 574 (604)
Q Consensus 508 g------~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~-----I~iwd~~t~~~--~~~l~~h 574 (604)
+ .+..||..+..-. ....+.... .... + -.-++.+.+.|+.+|. |..||..+.+- +..+...
T Consensus 438 ~~~~~l~sve~YDP~t~~W~-~~~~M~~~R--~~~g-~-a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~ 512 (571)
T KOG4441|consen 438 GSSNCLNSVECYDPETNTWT-LIAPMNTRR--SGFG-V-AVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSP 512 (571)
T ss_pred CCccccceEEEEcCCCCcee-ecCCccccc--ccce-E-EEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccc
Confidence 3 4667777654311 111111111 1111 1 1226777788887763 67788766443 3333333
Q ss_pred CCcEEEEEEecCCCCEEEEEeCCCc
Q 007411 575 EGVCIGCEWHPLEQSKVATCGWDGL 599 (604)
Q Consensus 575 ~~~V~~v~~sp~~~~~l~tgg~DG~ 599 (604)
...+..+.+ ++.+.+.||.||.
T Consensus 513 rs~~g~~~~---~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 513 RSAVGVVVL---GGKLYAVGGFDGN 534 (571)
T ss_pred cccccEEEE---CCEEEEEecccCc
Confidence 333333333 5678888888875
No 395
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.04 E-value=1 Score=47.55 Aligned_cols=153 Identities=14% Similarity=0.219 Sum_probs=79.4
Q ss_pred EcCCCCCEEEEEEC------CCcEEEEecCCCCeeeEEecCC---CCceeeEEEccCCCEEEEEEC--------------
Q 007411 321 FFPKYGHLILSAGM------DTKVKIWDVVNSGKCMRTYMGH---SKAVRDISFCNDGTKFLTASY-------------- 377 (604)
Q Consensus 321 fsp~~g~~L~sgs~------Dg~I~IWd~~~~~~~~~~~~~h---~~~V~~l~fspdg~~L~s~s~-------------- 377 (604)
.-|+ |.+++|+-. -|-+.+.|- ++.......... ..--.++.|.|..+.++|+..
T Consensus 137 clp~-G~imIS~lGd~~G~g~Ggf~llD~-~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d 214 (461)
T PF05694_consen 137 CLPD-GRIMISALGDADGNGPGGFVLLDG-ETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPED 214 (461)
T ss_dssp E-SS---EEEEEEEETTS-S--EEEEE-T-TT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTT
T ss_pred ecCC-ccEEEEeccCCCCCCCCcEEEEcC-ccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhH
Confidence 3455 777777522 244666665 334444444322 233567778888888888743
Q ss_pred ------CCcEEEEECCCCcEEEEeeCCC---cceEEEEccCCCCCcEEEEEEcCCeEEEEeC-CCCc----eEEEEcCc-
Q 007411 378 ------DKNIKYWDTETGQVIRTFSTGK---IPYVVKLNPDDDKQNILLAGMSDKKIVQWDM-NTKE----ITQEYDQH- 442 (604)
Q Consensus 378 ------Dg~I~vWD~~t~~~i~~~~~~~---~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~-~s~~----~~~~~~~h- 442 (604)
..+|.+||+.+.+.++++..+. .+.-+.|..++....-|+.+.-..+|..|-- ..++ .+..+...
T Consensus 215 ~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~ 294 (461)
T PF05694_consen 215 LEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKK 294 (461)
T ss_dssp HHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE
T ss_pred hhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcc
Confidence 3589999999999999998874 4556777777666555666666667766644 3332 22222111
Q ss_pred ----------------CCceeEEEEeCCCCEEEEEe-CCCcEEEEECCCC
Q 007411 443 ----------------LGAVNTITFVDSNRRFVTSS-DDKSLRVWEFGIP 475 (604)
Q Consensus 443 ----------------~~~V~~i~~sp~~~~l~sgs-~Dg~I~iwdl~~~ 475 (604)
..-|+.|.++.|.++|..++ .+|.|+.||+..+
T Consensus 295 v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 295 VEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp --SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred cCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence 24579999999999876554 6899999999764
No 396
>PRK10115 protease 2; Provisional
Probab=96.03 E-value=4 Score=46.88 Aligned_cols=243 Identities=10% Similarity=0.107 Sum_probs=116.3
Q ss_pred CCeEEEEEcCCCCCEEEEEE-CC----CcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECC------CcEE
Q 007411 314 KGVSAIRFFPKYGHLILSAG-MD----TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD------KNIK 382 (604)
Q Consensus 314 ~~V~~l~fsp~~g~~L~sgs-~D----g~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~D------g~I~ 382 (604)
-.+..+.|+|+ +++|+.+. .+ ..|++-|+ .++..+........ ..++|++|++.|+.+..+ ..|.
T Consensus 127 ~~l~~~~~Spd-g~~la~~~d~~G~E~~~l~v~d~-~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~ 202 (686)
T PRK10115 127 YTLGGMAITPD-NTIMALAEDFLSRRQYGIRFRNL-ETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVW 202 (686)
T ss_pred EEEeEEEECCC-CCEEEEEecCCCcEEEEEEEEEC-CCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEE
Confidence 44777899999 66666543 33 34778888 45543322211222 469999999877765543 3678
Q ss_pred EEECCCC--cEEEEeeCCCcceEEEEccCCCCCcEEEEEEc--CCeEEEEeCC--CCceEEEEcCcCCceeEEEEeCCCC
Q 007411 383 YWDTETG--QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMS--DKKIVQWDMN--TKEITQEYDQHLGAVNTITFVDSNR 456 (604)
Q Consensus 383 vWD~~t~--~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~--dg~I~iwD~~--s~~~~~~~~~h~~~V~~i~~sp~~~ 456 (604)
++++.++ +-...+........+......+...+++.... ++.+.+++.. .+.....+....+....+. +..+.
T Consensus 203 ~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 281 (686)
T PRK10115 203 RHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHR 281 (686)
T ss_pred EEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCE
Confidence 8888888 33444443322222222222223233433322 3578888843 3443222322222222222 32333
Q ss_pred EEEEEeCC-C--cEEEEECCCCeEEEEeecC-CCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCC-ceeecccccccCcc
Q 007411 457 RFVTSSDD-K--SLRVWEFGIPVVIKYISEP-HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE-RFQLNKKKRFAGHI 531 (604)
Q Consensus 457 ~l~sgs~D-g--~I~iwdl~~~~~~~~~~~~-~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~-~~~~~~~~~~~~~~ 531 (604)
+++....+ . .|...++........+... ....+..+.+. .+.++++...++.-+++-+.. ......+. +...
T Consensus 282 ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~-~~~~- 358 (686)
T PRK10115 282 FYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTREVIGIA-FDDP- 358 (686)
T ss_pred EEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCCceEEec-CCCC-
Confidence 33333222 2 3444444422222333333 23467777776 334555556666655554432 11111111 1111
Q ss_pred cccceEEEEEc--CCCC-EEEEEc---CCCcEEEEeCCCCe
Q 007411 532 VAGYACQVNFS--PDGR-FVMSGD---GEGKCWFWDWKSCK 566 (604)
Q Consensus 532 ~~~~v~~l~~s--pdg~-~L~sgs---~dG~I~iwd~~t~~ 566 (604)
..+..+.++ +++. ++++.+ .-+.++.+|..+++
T Consensus 359 --~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 359 --AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred --ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 122223344 3433 444433 34678888987764
No 397
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.02 E-value=1.9 Score=43.21 Aligned_cols=210 Identities=10% Similarity=0.108 Sum_probs=119.6
Q ss_pred eEEEEEcCCCCCEEEEEECCCcEEEEecCC------CCeeeEEecC-----CCCceeeEEEccCC------------CEE
Q 007411 316 VSAIRFFPKYGHLILSAGMDTKVKIWDVVN------SGKCMRTYMG-----HSKAVRDISFCNDG------------TKF 372 (604)
Q Consensus 316 V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~------~~~~~~~~~~-----h~~~V~~l~fspdg------------~~L 372 (604)
-..|+++|. +.+-++...-+...+||... ...++-++.. .....+.+.|+... ..|
T Consensus 25 ~WGia~~p~-~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 25 AWGLSYRPG-GPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred cceeEecCC-CCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 567999998 78888888889999999841 1123334432 23457777777432 247
Q ss_pred EEEECCCcEEEEECCCCcE-----EEEeeCC--Ccc-eEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEE--EEcCc
Q 007411 373 LTASYDKNIKYWDTETGQV-----IRTFSTG--KIP-YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQ--EYDQH 442 (604)
Q Consensus 373 ~s~s~Dg~I~vWD~~t~~~-----i~~~~~~--~~~-~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~--~~~~h 442 (604)
+.++.||+|.-|...-+.. ...+... ... .-+++........+.++--..++|-+||-.-..... .+...
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 8889999999998532222 1122211 111 233444333333455555667888888764332210 01000
Q ss_pred -----CCc-----------eeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcC------CCCE
Q 007411 443 -----LGA-----------VNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHP------NTNW 500 (604)
Q Consensus 443 -----~~~-----------V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp------~g~~ 500 (604)
-.+ |+-..-.++.+.=+.|..-|.|-+||+.-.-..+..........+.|+..| .+.+
T Consensus 184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~l 263 (336)
T TIGR03118 184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLSGAL 263 (336)
T ss_pred CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCCCCe
Confidence 000 111111122222233444578999998644444343445566678888876 4677
Q ss_pred EEEEEcCCeEEEEEcCCceeeccccc
Q 007411 501 LAAQSLDNQILIYSTRERFQLNKKKR 526 (604)
Q Consensus 501 l~s~s~Dg~I~iwd~~~~~~~~~~~~ 526 (604)
|+----||+|..||..++..+-.+..
T Consensus 264 LVGNFGDG~InaFD~~sG~~~g~L~~ 289 (336)
T TIGR03118 264 LVGNFGDGTINAYDPQSGAQLGQLLD 289 (336)
T ss_pred EEeecCCceeEEecCCCCceeeeecC
Confidence 77777899999999887665544433
No 398
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.99 E-value=0.00094 Score=73.88 Aligned_cols=118 Identities=17% Similarity=0.228 Sum_probs=67.0
Q ss_pred CCCcEEEEecCCCCeeeEEecCCCCceeeEEEcc-CCCEEEEEECCCcEEEEECC--CCcEEEEe------eCCCcceEE
Q 007411 334 MDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTE--TGQVIRTF------STGKIPYVV 404 (604)
Q Consensus 334 ~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fsp-dg~~L~s~s~Dg~I~vWD~~--t~~~i~~~------~~~~~~~~~ 404 (604)
+.+-|++-+.......-..+++..+.|-.+.|.. +...++ -.-|.+.|||+. .|+....+ ..+..+..+
T Consensus 109 ~~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V 186 (1283)
T KOG1916|consen 109 MENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLV 186 (1283)
T ss_pred hhhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCccee
Confidence 3455666665322221123456778888888854 222222 223678899875 34322211 224445566
Q ss_pred EEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCC
Q 007411 405 KLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS 454 (604)
Q Consensus 405 ~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~ 454 (604)
.|++.-.+..++..+..++.|++..+..... ..+.+|...+..++|...
T Consensus 187 ~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~ 235 (1283)
T KOG1916|consen 187 SWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAE 235 (1283)
T ss_pred eecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhh
Confidence 7776655556788888888888877655432 334457777766665443
No 399
>PHA03098 kelch-like protein; Provisional
Probab=95.96 E-value=0.32 Score=54.20 Aligned_cols=183 Identities=10% Similarity=0.092 Sum_probs=87.6
Q ss_pred CCEEEEEECCC------cEEEEecCCCCeeeEEecC---CCCceeeEEEccCCCEEEEEECC-----CcEEEEECCCCcE
Q 007411 326 GHLILSAGMDT------KVKIWDVVNSGKCMRTYMG---HSKAVRDISFCNDGTKFLTASYD-----KNIKYWDTETGQV 391 (604)
Q Consensus 326 g~~L~sgs~Dg------~I~IWd~~~~~~~~~~~~~---h~~~V~~l~fspdg~~L~s~s~D-----g~I~vWD~~t~~~ 391 (604)
+.+++.||.++ .+..||.. +... ..+.. .......+ .-++..++.||.+ ..+..||..+++.
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~-~~~W-~~~~~~~~~R~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTK-TKSW-NKVPELIYPRKNPGVT--VFNNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCC-CCee-eECCCCCcccccceEE--EECCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 56777776543 46677762 3322 22211 11111222 2267777888765 3477788877654
Q ss_pred EEEeeC--CCcceEEEEccCCCCCcEEEEEEcC------CeEEEEeCCCCceEEEEcCcCCc-eeEEEEeCCCCEEEEEe
Q 007411 392 IRTFST--GKIPYVVKLNPDDDKQNILLAGMSD------KKIVQWDMNTKEITQEYDQHLGA-VNTITFVDSNRRFVTSS 462 (604)
Q Consensus 392 i~~~~~--~~~~~~~~~~~~~~~~~~lvsg~~d------g~I~iwD~~s~~~~~~~~~h~~~-V~~i~~sp~~~~l~sgs 462 (604)
...-.. .....+.... ++.+++.|+.. ..+..||+.+++-...-...... -.++.. -++..++.|+
T Consensus 371 ~~~~~lp~~r~~~~~~~~----~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG 445 (534)
T PHA03098 371 REEPPLIFPRYNPCVVNV----NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIY-HDGKIYVIGG 445 (534)
T ss_pred eeCCCcCcCCccceEEEE----CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEE-ECCEEEEECC
Confidence 432221 1111222211 23567777632 46888998876433211101111 112222 3566677776
Q ss_pred CCC--------cEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcC-----CeEEEEEcCCc
Q 007411 463 DDK--------SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD-----NQILIYSTRER 518 (604)
Q Consensus 463 ~Dg--------~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~D-----g~I~iwd~~~~ 518 (604)
.+. .+.+||..+..-...-..+....-.+++. -+++.++.|+.+ +.|.+||..+.
T Consensus 446 ~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 446 ISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI-FNNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred ccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE-ECCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 432 37888887654332211111111112222 256666666644 45777776553
No 400
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.95 E-value=1.3 Score=44.07 Aligned_cols=163 Identities=9% Similarity=0.174 Sum_probs=106.0
Q ss_pred ecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCC--CcceEEEEccCCCCCcEEEEEEcCCeEEEEeC
Q 007411 353 YMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG--KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDM 430 (604)
Q Consensus 353 ~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~--~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~ 430 (604)
+.+-...|.++.|+|+.+.|++......-.||=...|+.++++... +.+..+.+... +.++++--.+..+.++.+
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~---n~fvi~dER~~~l~~~~v 157 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGG---NQFVIVDERDRALYLFTV 157 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecC---CEEEEEehhcceEEEEEE
Confidence 3455566999999999999999988888888888899999988654 33344444432 245555556778887776
Q ss_pred CCCceEEEE----------cCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEE--EEeecC-------CCCcccE
Q 007411 431 NTKEITQEY----------DQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVI--KYISEP-------HMHSMPS 491 (604)
Q Consensus 431 ~s~~~~~~~----------~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~--~~~~~~-------~~~~v~~ 491 (604)
.....+... .......-.++|.|....|+.+-.-.-+.||.+...... ...... ....+.+
T Consensus 158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSg 237 (316)
T COG3204 158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSG 237 (316)
T ss_pred cCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccc
Confidence 554222111 112456678999999999999988888888876532211 111100 1234677
Q ss_pred EEEcCC-CCEEEEEEcCCeEEEEEcCCc
Q 007411 492 ISLHPN-TNWLAAQSLDNQILIYSTRER 518 (604)
Q Consensus 492 l~~sp~-g~~l~s~s~Dg~I~iwd~~~~ 518 (604)
+.+++. +.+|+.+..++.+.-.|....
T Consensus 238 l~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 238 LEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred ceecCCCCcEEEEecCCceEEEEecCCC
Confidence 888875 455555666666776776543
No 401
>PRK13684 Ycf48-like protein; Provisional
Probab=95.89 E-value=2.7 Score=43.73 Aligned_cols=271 Identities=12% Similarity=0.106 Sum_probs=133.4
Q ss_pred CCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEec----CCCCceeeEEEccCCCEEEEEECCCcEEEEECCC
Q 007411 313 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYM----GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTET 388 (604)
Q Consensus 313 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~----~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t 388 (604)
...+++|.|... .+-+++|. +|.| |...+.++.-.... .....+.++.|.++ ..+++ +..+.|.. ..+.
T Consensus 45 ~~~l~~v~F~d~-~~g~avG~-~G~i--l~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~i~~-S~Dg 117 (334)
T PRK13684 45 EANLLDIAFTDP-NHGWLVGS-NRTL--LETNDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSLLLH-TTDG 117 (334)
T ss_pred CCceEEEEEeCC-CcEEEEEC-CCEE--EEEcCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCceEEE-ECCC
Confidence 557889999855 56566664 4543 43323333222211 12234778888643 34444 34443322 2222
Q ss_pred CcEEEEeeC----CCcce-EEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEE-cCcCCceeEEEEeCCCCEEEEEe
Q 007411 389 GQVIRTFST----GKIPY-VVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY-DQHLGAVNTITFVDSNRRFVTSS 462 (604)
Q Consensus 389 ~~~i~~~~~----~~~~~-~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~-~~h~~~V~~i~~sp~~~~l~sgs 462 (604)
|+.-..+.. ..... +..+.. ...++ ++..|.|..=+ ..|+.-..+ ..-.+.+.++.+.+++.+++++
T Consensus 118 G~tW~~~~~~~~~~~~~~~i~~~~~----~~~~~-~g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g- 190 (334)
T PRK13684 118 GKNWTRIPLSEKLPGSPYLITALGP----GTAEM-ATNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSPDGKYVAVS- 190 (334)
T ss_pred CCCCeEccCCcCCCCCceEEEEECC----Cccee-eeccceEEEEC-CCCCCceeCcCCCcceEEEEEECCCCeEEEEe-
Confidence 322222211 11111 222211 12233 33344443221 222222222 1234578899999987655554
Q ss_pred CCCcEEEE-ECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEE
Q 007411 463 DDKSLRVW-EFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNF 541 (604)
Q Consensus 463 ~Dg~I~iw-dl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~ 541 (604)
..|.+..- + ..+.....+..+....+.++.+.+++..++++ ..|.+++=+...+....... .........+..+.+
T Consensus 191 ~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~-~~~~~~~~~l~~v~~ 267 (334)
T PRK13684 191 SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPI-IPEITNGYGYLDLAY 267 (334)
T ss_pred CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcccccc-CCccccccceeeEEE
Confidence 45655432 2 12233333444566788999999999877665 46766532333333222111 110111234567889
Q ss_pred cCCCCEEEEEcCCCcEEEEeCCCCeeEEEEec---CCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007411 542 SPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC---HEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 542 spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~---h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
.+++..+++| .+|.|. .....++....+.. -......+.|.. ++. .+..|..|.|.-|+
T Consensus 268 ~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~-~~~-~~~~G~~G~il~~~ 329 (334)
T PRK13684 268 RTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLD-PEK-GFVLGQRGVLLRYV 329 (334)
T ss_pred cCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeC-CCc-eEEECCCceEEEec
Confidence 9988766655 566554 34455555444432 123577788776 444 45566688887664
No 402
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.78 E-value=0.51 Score=46.92 Aligned_cols=162 Identities=8% Similarity=0.041 Sum_probs=109.7
Q ss_pred cCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCce
Q 007411 440 DQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF 519 (604)
Q Consensus 440 ~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~ 519 (604)
.+-...+.+++|+|+.+.|++......-.|+=-..+..+..+.....+..-.|.+..++.++++--.++.+.++.+....
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 34455699999999999999988888777777777888888877666677788999888888888888999988776542
Q ss_pred eeccccc----ccCc-ccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCee---EEEEecCC-------CcEEEEEEe
Q 007411 520 QLNKKKR----FAGH-IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKV---FRTLKCHE-------GVCIGCEWH 584 (604)
Q Consensus 520 ~~~~~~~----~~~~-~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~---~~~l~~h~-------~~V~~v~~s 584 (604)
....... +... ......-.++|+|..+.|+.+-.-.-+.||.+..+.. +.....+. ..|.++.|+
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~ 241 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN 241 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence 2221111 1110 0023345699999999998888777777776653321 11111111 246778888
Q ss_pred cCCCCEEEEEeCCCcEE
Q 007411 585 PLEQSKVATCGWDGLIK 601 (604)
Q Consensus 585 p~~~~~l~tgg~DG~I~ 601 (604)
+..+.+|+-+..++.|.
T Consensus 242 ~~~~~LLVLS~ESr~l~ 258 (316)
T COG3204 242 AITNSLLVLSDESRRLL 258 (316)
T ss_pred CCCCcEEEEecCCceEE
Confidence 86677777666666553
No 403
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.67 E-value=2.6 Score=48.72 Aligned_cols=113 Identities=14% Similarity=0.209 Sum_probs=73.7
Q ss_pred CCEEEEEECCCcEEEEECCCCcEEEEeeCCCcce-------E--EEEccC-------------CCCCcEEEEEEcCCeEE
Q 007411 369 GTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPY-------V--VKLNPD-------------DDKQNILLAGMSDKKIV 426 (604)
Q Consensus 369 g~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~-------~--~~~~~~-------------~~~~~~lvsg~~dg~I~ 426 (604)
+..|+.|+.++.|.-.|..+|+.+.++....... | +.+... ......++.++.|+.|+
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 5577778888999999999999998876543211 0 111110 01224688899999999
Q ss_pred EEeCCCCceEEEEcCcCCcee-------------EEEEeC--CCCEEEEEeC----------CCcEEEEECCCCeEEEEe
Q 007411 427 QWDMNTKEITQEYDQHLGAVN-------------TITFVD--SNRRFVTSSD----------DKSLRVWEFGIPVVIKYI 481 (604)
Q Consensus 427 iwD~~s~~~~~~~~~h~~~V~-------------~i~~sp--~~~~l~sgs~----------Dg~I~iwdl~~~~~~~~~ 481 (604)
-.|.++|+.+..+.. .+.|. .+.-.| .+..+++|+. +|.|+-+|.++++.+-.+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999999877632 22211 011111 1345666642 688999999999988776
Q ss_pred e
Q 007411 482 S 482 (604)
Q Consensus 482 ~ 482 (604)
.
T Consensus 353 ~ 353 (764)
T TIGR03074 353 D 353 (764)
T ss_pred e
Confidence 5
No 404
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.46 E-value=1.1 Score=44.62 Aligned_cols=146 Identities=16% Similarity=0.129 Sum_probs=86.4
Q ss_pred ceeEEEEeCCCCEEEEEe---CCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEE-cCCcee
Q 007411 445 AVNTITFVDSNRRFVTSS---DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYS-TRERFQ 520 (604)
Q Consensus 445 ~V~~i~~sp~~~~l~sgs---~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd-~~~~~~ 520 (604)
.+.+.++++++..++... ....|+++..... ..... ....+...+|++++...++...+...+++. ...+..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~--~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP--VRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc--ceeec--cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence 688899999999877665 3344555554332 22222 233788889999987777766666666663 222211
Q ss_pred ecccccccCcccccceEEEEEcCCCCEEEEEc---CCCcEEEEeCC---CC------eeEEEEecCCCcEEEEEEecCCC
Q 007411 521 LNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD---GEGKCWFWDWK---SC------KVFRTLKCHEGVCIGCEWHPLEQ 588 (604)
Q Consensus 521 ~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs---~dG~I~iwd~~---t~------~~~~~l~~h~~~V~~v~~sp~~~ 588 (604)
....-.... ....|..+.+||||..++... .++.|++=-+. .+ ..+.........+.++.|.+ +.
T Consensus 101 ~~~~v~~~~--~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~-~~ 177 (253)
T PF10647_consen 101 EPVEVDWPG--LRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD-DS 177 (253)
T ss_pred eeEEecccc--cCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC-CC
Confidence 111111111 112788999999999887655 45777776542 23 11222223345789999999 55
Q ss_pred CEEEEEeCC
Q 007411 589 SKVATCGWD 597 (604)
Q Consensus 589 ~~l~tgg~D 597 (604)
.+++.+...
T Consensus 178 ~L~V~~~~~ 186 (253)
T PF10647_consen 178 TLVVLGRSA 186 (253)
T ss_pred EEEEEeCCC
Confidence 565555443
No 405
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.41 E-value=4.1 Score=42.60 Aligned_cols=224 Identities=16% Similarity=0.133 Sum_probs=107.4
Q ss_pred EEEccCCCEEEEEEC---CCcEEEEECCCCcEEEEeeCCCc-ceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEE
Q 007411 363 ISFCNDGTKFLTASY---DKNIKYWDTETGQVIRTFSTGKI-PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQE 438 (604)
Q Consensus 363 l~fspdg~~L~s~s~---Dg~I~vWD~~t~~~i~~~~~~~~-~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~ 438 (604)
=+|.++|+.|+.++. ...+.+.|+.+++..+.-..... .....+++.+ ..++.......|+-.|+.+.+....
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~---~~~~Yv~~~~~l~~vdL~T~e~~~v 117 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDD---RALYYVKNGRSLRRVDLDTLEERVV 117 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTS---SEEEEEETTTEEEEEETTT--EEEE
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCC---CeEEEEECCCeEEEEECCcCcEEEE
Confidence 357788987776665 45678889999888776554322 2223444433 4455555667899999999987777
Q ss_pred EcCcCCceeEEEEe--CCCCEEEEEe----------------------CCCcEEEEECCCCeEEEEeecCCCCcccEEEE
Q 007411 439 YDQHLGAVNTITFV--DSNRRFVTSS----------------------DDKSLRVWEFGIPVVIKYISEPHMHSMPSISL 494 (604)
Q Consensus 439 ~~~h~~~V~~i~~s--p~~~~l~sgs----------------------~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~ 494 (604)
+......+-...|. .++..++-.- -.+.|.-.|+.+++....+. ...-+..+.+
T Consensus 118 y~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~--~~~wlgH~~f 195 (386)
T PF14583_consen 118 YEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE--DTDWLGHVQF 195 (386)
T ss_dssp EE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE--ESS-EEEEEE
T ss_pred EECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe--cCccccCccc
Confidence 77677766556664 3455543221 12345556677665544443 3345667888
Q ss_pred cCCCCEEEEEEcCC-----eEEEEEcCCc-eeecccccccCcccccceEEEEEcCCCCEEEEEc-----CCCcEEEEeCC
Q 007411 495 HPNTNWLAAQSLDN-----QILIYSTRER-FQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD-----GEGKCWFWDWK 563 (604)
Q Consensus 495 sp~g~~l~s~s~Dg-----~I~iwd~~~~-~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs-----~dG~I~iwd~~ 563 (604)
+|....+++-|..| .-+||-++.. .....+. .+.....+..=-|+|||..|.--+ .+..|.-+|..
T Consensus 196 sP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~---~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~ 272 (386)
T PF14583_consen 196 SPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVH---RRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPD 272 (386)
T ss_dssp ETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS------TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TT
T ss_pred CCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeee---cCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCC
Confidence 88765555444322 1245544322 1121111 122234445567899999876422 24467778888
Q ss_pred CCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCC
Q 007411 564 SCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWD 597 (604)
Q Consensus 564 t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~D 597 (604)
+++....... ..+..+.-++ ++.+++-=|.|
T Consensus 273 t~~~~~~~~~--p~~~H~~ss~-Dg~L~vGDG~d 303 (386)
T PF14583_consen 273 TGERRRLMEM--PWCSHFMSSP-DGKLFVGDGGD 303 (386)
T ss_dssp T--EEEEEEE---SEEEEEE-T-TSSEEEEEE--
T ss_pred CCCceEEEeC--CceeeeEEcC-CCCEEEecCCC
Confidence 8866443332 2455566666 56555544443
No 406
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.25 E-value=0.56 Score=49.74 Aligned_cols=145 Identities=17% Similarity=0.198 Sum_probs=95.8
Q ss_pred CCCEEE-EEECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCC----cEEEEEEcCCeEEEEeCCCCc-eEE--EE
Q 007411 368 DGTKFL-TASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQ----NILLAGMSDKKIVQWDMNTKE-ITQ--EY 439 (604)
Q Consensus 368 dg~~L~-s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~----~~lvsg~~dg~I~iwD~~s~~-~~~--~~ 439 (604)
+.++|+ .++.-..+.-.|++.|+.+.....+... ++.+.|...-+ .--++|-++..|.-.|.+-.. .+. ..
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~es 556 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVES 556 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeee
Confidence 444444 4455567888899999999998887776 67777654321 225677788888888887432 111 11
Q ss_pred cC--cCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 007411 440 DQ--HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR 516 (604)
Q Consensus 440 ~~--h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~ 516 (604)
+. .....+|..-. .+.+++.+|..|-|++|| +.+...++...+....|..+..+.+|+++++.| ...+.+.|++
T Consensus 557 KdY~tKn~Fss~~tT-esGyIa~as~kGDirLyD-Rig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 557 KDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYD-RIGKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDVP 632 (776)
T ss_pred hhccccccccccccc-cCceEEEecCCCceeeeh-hhcchhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEecc
Confidence 11 11122333333 345999999999999999 344444555555677899999999999988877 4567777764
No 407
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=95.12 E-value=5.3 Score=42.11 Aligned_cols=197 Identities=16% Similarity=0.074 Sum_probs=108.2
Q ss_pred CCCEEEEEECCCcEEEEECCCCcEEEEeeCCC---cceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcC-
Q 007411 368 DGTKFLTASYDKNIKYWDTETGQVIRTFSTGK---IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHL- 443 (604)
Q Consensus 368 dg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~---~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~- 443 (604)
++ .++.+..+|.|.-.|.+++..+....... ....-.+..+ ..+++++.++.++.+|.++|+.+..+....
T Consensus 68 dg-~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~----G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~ 142 (370)
T COG1520 68 DG-TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSD----GKIYVGSWDGKLYALDASTGTLVWSRNVGGS 142 (370)
T ss_pred CC-eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeC----CeEEEecccceEEEEECCCCcEEEEEecCCC
Confidence 44 45555788999999999999876554432 1111111111 348899999999999999999888877655
Q ss_pred CceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCC--CCcccEEEEcCCCCEEEEEEc--CCeEEEEEcCCce
Q 007411 444 GAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPH--MHSMPSISLHPNTNWLAAQSL--DNQILIYSTRERF 519 (604)
Q Consensus 444 ~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~--~~~v~~l~~sp~g~~l~s~s~--Dg~I~iwd~~~~~ 519 (604)
-.+..-.+..++ .+..++.++.+...+..++...-...... ...+..-.. .....+..+.. ++.+.-++..++.
T Consensus 143 ~~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~~vy~~~~~~~~~~~a~~~~~G~ 220 (370)
T COG1520 143 PYYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-IASGTVYVGSDGYDGILYALNAEDGT 220 (370)
T ss_pred eEEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce-eecceEEEecCCCcceEEEEEccCCc
Confidence 112222222233 34444467888888887776655433211 111111111 12334444444 5556666665554
Q ss_pred eecccccc--cCcc-----cccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecC
Q 007411 520 QLNKKKRF--AGHI-----VAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCH 574 (604)
Q Consensus 520 ~~~~~~~~--~~~~-----~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h 574 (604)
.....+.. .+.. .......+.. +.-++.++.+|.+...+..+++.+..+...
T Consensus 221 ~~w~~~~~~~~~~~~~~~~~~~~~~~v~v---~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 221 LKWSQKVSQTIGRTAISTTPAVDGGPVYV---DGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred EeeeeeeecccCcccccccccccCceEEE---CCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 44332110 0100 0000000111 223366777888999999999999888764
No 408
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.11 E-value=5.7 Score=42.44 Aligned_cols=146 Identities=13% Similarity=0.146 Sum_probs=89.6
Q ss_pred CCCEEEEEECCCcEEEEECCCCc-----EEEEeeCCCcceEEEEccC-CCCCcEEEEEEcCCeEEEEeCCC--Cc-----
Q 007411 368 DGTKFLTASYDKNIKYWDTETGQ-----VIRTFSTGKIPYVVKLNPD-DDKQNILLAGMSDKKIVQWDMNT--KE----- 434 (604)
Q Consensus 368 dg~~L~s~s~Dg~I~vWD~~t~~-----~i~~~~~~~~~~~~~~~~~-~~~~~~lvsg~~dg~I~iwD~~s--~~----- 434 (604)
+...|++||..|.++|++...+. .+.......++..+..-.. .......++.-.-.+|.+|.+.. +.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence 34689999999999999986543 4444455555554444332 22233445556677888887731 11
Q ss_pred --eEEEEcCcCC--ceeEEEEeC----C-CCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEE
Q 007411 435 --ITQEYDQHLG--AVNTITFVD----S-NRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS 505 (604)
Q Consensus 435 --~~~~~~~h~~--~V~~i~~sp----~-~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s 505 (604)
.+..+..|.- ....+++-| . ..+|.+-+.||.+.+|+-+.-.....+ +..--...+++.+....|++++
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~l--p~~llPgPl~Y~~~tDsfvt~s 193 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFL--PDFLLPGPLCYCPRTDSFVTAS 193 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEc--CCCCCCcCeEEeecCCEEEEec
Confidence 1111112221 222333322 1 357788899999999997655444443 2333345678888899999999
Q ss_pred cCCeEEEEEc
Q 007411 506 LDNQILIYST 515 (604)
Q Consensus 506 ~Dg~I~iwd~ 515 (604)
.+..+..|..
T Consensus 194 ss~~l~~Yky 203 (418)
T PF14727_consen 194 SSWTLECYKY 203 (418)
T ss_pred CceeEEEecH
Confidence 9999999875
No 409
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.94 E-value=1.5 Score=43.49 Aligned_cols=197 Identities=14% Similarity=0.221 Sum_probs=105.9
Q ss_pred EEecCCCCCeEEEEEcCCCCCEEEEEECC-----CcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEEC----
Q 007411 307 HTWSGHTKGVSAIRFFPKYGHLILSAGMD-----TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASY---- 377 (604)
Q Consensus 307 ~tl~gH~~~V~~l~fsp~~g~~L~sgs~D-----g~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~---- 377 (604)
+-|-||. .|||+ |.+|+..-.| |.|-|||..+.-..+-.+..|.-.-..+.|.+||+.++.+..
T Consensus 113 RHfyGHG------vfs~d-G~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIet 185 (366)
T COG3490 113 RHFYGHG------VFSPD-GRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIET 185 (366)
T ss_pred ceeeccc------ccCCC-CcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceec
Confidence 4455675 48999 8888876443 789999996555677778889888899999999999987742
Q ss_pred --------------CCcEEEEECCCCcEEEEeeCCC--cceEEEEccCCCCCcEEEEEEcCCe-----EEEEeCCCCceE
Q 007411 378 --------------DKNIKYWDTETGQVIRTFSTGK--IPYVVKLNPDDDKQNILLAGMSDKK-----IVQWDMNTKEIT 436 (604)
Q Consensus 378 --------------Dg~I~vWD~~t~~~i~~~~~~~--~~~~~~~~~~~~~~~~lvsg~~dg~-----I~iwD~~s~~~~ 436 (604)
.-++.+.|..+|..+....... ....+.-...+.++.+++.+-..|. -.+=-...++.+
T Consensus 186 hpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l 265 (366)
T COG3490 186 HPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPL 265 (366)
T ss_pred ccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcC
Confidence 0123334444444443322221 0111111111111111111111110 000001112222
Q ss_pred EEEcC-------cCCceeEEEEeCCCCEEEEEeC-CCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCC
Q 007411 437 QEYDQ-------HLGAVNTITFVDSNRRFVTSSD-DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN 508 (604)
Q Consensus 437 ~~~~~-------h~~~V~~i~~sp~~~~l~sgs~-Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg 508 (604)
.-+.. ....|-+|+.+.+..+++.+|- .+...+||..++..+....... ... +-+...-|++.+.+|
T Consensus 266 ~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~d---aaG--va~~~~gf~vssg~G 340 (366)
T COG3490 266 EFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPD---AAG--VAAAKGGFAVSSGQG 340 (366)
T ss_pred cccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccccc---ccc--ceeccCceEEecCCc
Confidence 22211 1234667777766666655554 4567789999988776543221 222 223444577778889
Q ss_pred eEEEEEc
Q 007411 509 QILIYST 515 (604)
Q Consensus 509 ~I~iwd~ 515 (604)
.|.+++-
T Consensus 341 ~~~~~s~ 347 (366)
T COG3490 341 RIIFYSR 347 (366)
T ss_pred eEEeccc
Confidence 9988843
No 410
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.91 E-value=0.24 Score=57.05 Aligned_cols=129 Identities=10% Similarity=-0.011 Sum_probs=80.3
Q ss_pred EEcCCeEEEEeCCCCceEE-----EEc------CcCCceeEEEEeCCCC-EEEEEeCCCcEEEEECCCCeEEEEeecCCC
Q 007411 419 GMSDKKIVQWDMNTKEITQ-----EYD------QHLGAVNTITFVDSNR-RFVTSSDDKSLRVWEFGIPVVIKYISEPHM 486 (604)
Q Consensus 419 g~~dg~I~iwD~~s~~~~~-----~~~------~h~~~V~~i~~sp~~~-~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~ 486 (604)
...+-.|..||+++-.... .+. ....-..++.|+|.-. ..+.+..|+.|++..+......... .+..
T Consensus 120 tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s-~p~t 198 (1405)
T KOG3630|consen 120 TSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTS-FPVT 198 (1405)
T ss_pred ecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcc-cCcc
Confidence 3334478899997542211 111 1223456778887532 4567778999999877544332222 2466
Q ss_pred CcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEE
Q 007411 487 HSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMS 550 (604)
Q Consensus 487 ~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~s 550 (604)
...++++|+|.|+.+++|-..|++.-|...-.. ...+....... ...|.+|+|-....+|++
T Consensus 199 ~~~Tav~WSprGKQl~iG~nnGt~vQy~P~lei-k~~ip~Pp~~e-~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 199 NSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEI-KSEIPEPPVEE-NYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred cceeeEEeccccceeeEecCCCeEEEeecccce-eecccCCCcCC-CcceeEEEEecceeEEEE
Confidence 778999999999999999999999988754321 11111111111 356888898777666664
No 411
>PHA02790 Kelch-like protein; Provisional
Probab=94.87 E-value=1.6 Score=47.86 Aligned_cols=181 Identities=9% Similarity=0.009 Sum_probs=83.5
Q ss_pred CCEEEEEECCC-----cEEEEecCCCCeeeE--EecCCCCceeeEEEccCCCEEEEEECC--CcEEEEECCCCcEEEEee
Q 007411 326 GHLILSAGMDT-----KVKIWDVVNSGKCMR--TYMGHSKAVRDISFCNDGTKFLTASYD--KNIKYWDTETGQVIRTFS 396 (604)
Q Consensus 326 g~~L~sgs~Dg-----~I~IWd~~~~~~~~~--~~~~h~~~V~~l~fspdg~~L~s~s~D--g~I~vWD~~t~~~i~~~~ 396 (604)
+.+++.||.++ .+..||.. ...... .+....... +++ .-++...+.|+.+ ..+..||..+++....-.
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~-~~~W~~~~~m~~~r~~~-~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYI-SNNWIPIPPMNSPRLYA-SGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECC-CCEEEECCCCCchhhcc-eEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 56667777643 45567762 322111 111111111 111 2367777777764 357788877665433222
Q ss_pred CCCcceEEEEccCCCCCcEEEEEEcCC---eEEEEeCCCCceEEEE--cCcCCceeEEEEeCCCCEEEEEeCCCcEEEEE
Q 007411 397 TGKIPYVVKLNPDDDKQNILLAGMSDK---KIVQWDMNTKEITQEY--DQHLGAVNTITFVDSNRRFVTSSDDKSLRVWE 471 (604)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~lvsg~~dg---~I~iwD~~s~~~~~~~--~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwd 471 (604)
............. ++.+.+.|+.++ .+..||.++.+-...- ...... .+++ .-++..++.| |.+.+||
T Consensus 349 l~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~-~~~~-~~~~~IYv~G---G~~e~yd 421 (480)
T PHA02790 349 LLKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYK-SCAL-VFGRRLFLVG---RNAEFYC 421 (480)
T ss_pred CCCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcccc-ceEE-EECCEEEEEC---CceEEec
Confidence 2221111111111 236677777543 4677888766433211 101111 1222 2355666666 3577888
Q ss_pred CCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcC-----CeEEEEEcCC
Q 007411 472 FGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD-----NQILIYSTRE 517 (604)
Q Consensus 472 l~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~D-----g~I~iwd~~~ 517 (604)
..+..-...-..+....-.+++. -+++..++|+.+ ..|..||..+
T Consensus 422 p~~~~W~~~~~m~~~r~~~~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 422 ESSNTWTLIDDPIYPRDNPELII-VDNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred CCCCcEeEcCCCCCCccccEEEE-ECCEEEEECCcCCCcccceEEEEECCC
Confidence 87654432221111111122222 256667777644 2345555443
No 412
>PHA03098 kelch-like protein; Provisional
Probab=94.81 E-value=1.3 Score=49.19 Aligned_cols=190 Identities=11% Similarity=0.042 Sum_probs=90.9
Q ss_pred CCCEEEEEECCC------cEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcC-----CeEEEEeCCCCceE
Q 007411 368 DGTKFLTASYDK------NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD-----KKIVQWDMNTKEIT 436 (604)
Q Consensus 368 dg~~L~s~s~Dg------~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~d-----g~I~iwD~~s~~~~ 436 (604)
++..++.|+.++ .+..||..+++....-.............. ++.+++.|+.+ ..+..||..+++-.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 556677776542 577888887765432211111111111111 23677777765 35778888776533
Q ss_pred EEEcCcCCc-eeEEEEeCCCCEEEEEeCC------CcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcC--
Q 007411 437 QEYDQHLGA-VNTITFVDSNRRFVTSSDD------KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD-- 507 (604)
Q Consensus 437 ~~~~~h~~~-V~~i~~sp~~~~l~sgs~D------g~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~D-- 507 (604)
..-.-.... -.+++. -+++.++.|+.+ ..+..||..+..-......+....-.+++ ..++..++.|+.+
T Consensus 372 ~~~~lp~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~ 449 (534)
T PHA03098 372 EEPPLIFPRYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAI-YHDGKIYVIGGISYI 449 (534)
T ss_pred eCCCcCcCCccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEE-EECCEEEEECCccCC
Confidence 211111111 112222 356677777632 35788898765433221111111112222 2356666666543
Q ss_pred ------CeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCC-----CcEEEEeCCCCe
Q 007411 508 ------NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE-----GKCWFWDWKSCK 566 (604)
Q Consensus 508 ------g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~d-----G~I~iwd~~t~~ 566 (604)
..+.+||..+..-. ......... .....+.+ ++++++.|+.+ ..|.+||..+.+
T Consensus 450 ~~~~~~~~v~~yd~~~~~W~-~~~~~~~~r--~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 450 DNIKVYNIVESYNPVTNKWT-ELSSLNFPR--INASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CCCcccceEEEecCCCCcee-eCCCCCccc--ccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 23788887654311 111111110 11111222 66777777654 467888876643
No 413
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.63 E-value=0.084 Score=37.52 Aligned_cols=34 Identities=15% Similarity=0.150 Sum_probs=30.0
Q ss_pred CCceeeEEEccCCCEEEEEECCCcEEEEECCCCcE
Q 007411 357 SKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQV 391 (604)
Q Consensus 357 ~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~ 391 (604)
...|.+++|+|...+|+.++.+|.|.|+.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 456999999999999999999999999998 4543
No 414
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.62 E-value=4.3 Score=46.52 Aligned_cols=75 Identities=17% Similarity=0.212 Sum_probs=51.8
Q ss_pred CceeeEEEccCCCEEEEEECCCcEEEEECCC----------Cc--EE-EEee---------CCCcceEEEEccCCCCCcE
Q 007411 358 KAVRDISFCNDGTKFLTASYDKNIKYWDTET----------GQ--VI-RTFS---------TGKIPYVVKLNPDDDKQNI 415 (604)
Q Consensus 358 ~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t----------~~--~i-~~~~---------~~~~~~~~~~~~~~~~~~~ 415 (604)
-.|..|.++++|++|+..|..| |.|..+-. |+ .. +++. .......+.|+|.+..+..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 3588899999999999888755 44444321 11 11 1111 1223456788888777788
Q ss_pred EEEEEcCCeEEEEeCCCC
Q 007411 416 LLAGMSDKKIVQWDMNTK 433 (604)
Q Consensus 416 lvsg~~dg~I~iwD~~s~ 433 (604)
|++-.+|+.|++||+...
T Consensus 164 l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEEecCCEEEEEecCCC
Confidence 999999999999999754
No 415
>PRK10115 protease 2; Provisional
Probab=94.58 E-value=11 Score=43.29 Aligned_cols=112 Identities=11% Similarity=0.083 Sum_probs=65.8
Q ss_pred CceeeEEEccCCCEEEEEEC-C----CcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcC-----CeEEE
Q 007411 358 KAVRDISFCNDGTKFLTASY-D----KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD-----KKIVQ 427 (604)
Q Consensus 358 ~~V~~l~fspdg~~L~s~s~-D----g~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~d-----g~I~i 427 (604)
-.+..+.|+|+|++|+.+.. + ..|++.|+.+|..+...... ....+.|.+++. .++++...+ ..|+.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~-~~~~~~w~~D~~--~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN-VEPSFVWANDSW--TFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC-cceEEEEeeCCC--EEEEEEecCCCCCCCEEEE
Confidence 34677889999998876533 2 35889999888643222111 123466666542 455554432 47888
Q ss_pred EeCCCC--ceEEEEcCcCCcee-EEEEeCCCCEEEEEeC---CCcEEEEEC
Q 007411 428 WDMNTK--EITQEYDQHLGAVN-TITFVDSNRRFVTSSD---DKSLRVWEF 472 (604)
Q Consensus 428 wD~~s~--~~~~~~~~h~~~V~-~i~~sp~~~~l~sgs~---Dg~I~iwdl 472 (604)
+++.++ +-...+........ .+..+.++++++..+. ++.+.+++.
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 999887 43344443333333 3333447776654433 457888885
No 416
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=94.39 E-value=5.1 Score=41.31 Aligned_cols=104 Identities=8% Similarity=0.108 Sum_probs=52.5
Q ss_pred cEEEEEEcC-----CeEEEEeCCCCce---EEEEcCcCCce--eEEEEeCCCCEEEEEeC-----CCcEEEEECCCCeEE
Q 007411 414 NILLAGMSD-----KKIVQWDMNTKEI---TQEYDQHLGAV--NTITFVDSNRRFVTSSD-----DKSLRVWEFGIPVVI 478 (604)
Q Consensus 414 ~~lvsg~~d-----g~I~iwD~~s~~~---~~~~~~h~~~V--~~i~~sp~~~~l~sgs~-----Dg~I~iwdl~~~~~~ 478 (604)
.+++.|+.+ ..+..||+.+.+. ...+..-..+. .+++.. ++.+++.|+. ...+..||+.+..-.
T Consensus 74 ~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~ 152 (323)
T TIGR03548 74 GIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DGTLYVGGGNRNGKPSNKSYLFNLETQEWF 152 (323)
T ss_pred EEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CCEEEEEeCcCCCccCceEEEEcCCCCCee
Confidence 566777654 3677788876653 12221111111 122232 4666777764 235788888765433
Q ss_pred EEeecCCCCcccEEEEcCCCCEEEEEEcCC----eEEEEEcCCc
Q 007411 479 KYISEPHMHSMPSISLHPNTNWLAAQSLDN----QILIYSTRER 518 (604)
Q Consensus 479 ~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg----~I~iwd~~~~ 518 (604)
..-..+........+...++++.+.|+.++ .+.+||..+.
T Consensus 153 ~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 153 ELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred ECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence 221111111222233334677777777653 3567887654
No 417
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.29 E-value=0.082 Score=59.23 Aligned_cols=159 Identities=17% Similarity=0.191 Sum_probs=90.0
Q ss_pred cCcCCceeEEEEeCC-CCEEEEEeCCCcEEEEECCC------CeEEEEeecCCCCcccEEEEcC---CCCEEEEEEcCCe
Q 007411 440 DQHLGAVNTITFVDS-NRRFVTSSDDKSLRVWEFGI------PVVIKYISEPHMHSMPSISLHP---NTNWLAAQSLDNQ 509 (604)
Q Consensus 440 ~~h~~~V~~i~~sp~-~~~l~sgs~Dg~I~iwdl~~------~~~~~~~~~~~~~~v~~l~~sp---~g~~l~s~s~Dg~ 509 (604)
++..+.|-.+.|-.. ...+. -.-|.+.||++.. ......+..+....+.-+.|.| +..++.++-.++.
T Consensus 129 kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~ 206 (1283)
T KOG1916|consen 129 KGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGE 206 (1283)
T ss_pred hcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCc
Confidence 345566666666421 11111 2346788998752 2233344445555566666665 5677788888888
Q ss_pred EEEEEcCCceeecccccccCccc---------ccceEEEEEcCCCCEEEEEcCCCcEEEEeCC-----CCeeEEEEecCC
Q 007411 510 ILIYSTRERFQLNKKKRFAGHIV---------AGYACQVNFSPDGRFVMSGDGEGKCWFWDWK-----SCKVFRTLKCHE 575 (604)
Q Consensus 510 I~iwd~~~~~~~~~~~~~~~~~~---------~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~-----t~~~~~~l~~h~ 575 (604)
|++........ ..+.+|.. .+++.--.+||||..++..+.||.+.+|.+. ..+|++.++.|+
T Consensus 207 i~lL~~~ra~~----~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd 282 (1283)
T KOG1916|consen 207 IRLLNINRALR----SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHD 282 (1283)
T ss_pred eeEeeechHHH----HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCC
Confidence 88876654321 22333311 1222223489999999999999999888653 345666777777
Q ss_pred C-cEEEEEEecCCC--------CEEEEEeC-CCcEEEeC
Q 007411 576 G-VCIGCEWHPLEQ--------SKVATCGW-DGLIKYWD 604 (604)
Q Consensus 576 ~-~V~~v~~sp~~~--------~~l~tgg~-DG~I~vWD 604 (604)
+ +-.|..|+.+.. .++++++. ..-+++|.
T Consensus 283 ~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~ 321 (1283)
T KOG1916|consen 283 KHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWA 321 (1283)
T ss_pred CCCceeeeeccccccCCccceeEEEEecccCCcceeEee
Confidence 4 322323333111 14555554 34478873
No 418
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.25 E-value=0.36 Score=55.68 Aligned_cols=144 Identities=11% Similarity=0.059 Sum_probs=89.5
Q ss_pred ceeeEEEccCCCEEEEE--ECCCcEEEEECCCCcEEE--------E----eeCCCcceEEEEccCCCCCcEEEEEEcCCe
Q 007411 359 AVRDISFCNDGTKFLTA--SYDKNIKYWDTETGQVIR--------T----FSTGKIPYVVKLNPDDDKQNILLAGMSDKK 424 (604)
Q Consensus 359 ~V~~l~fspdg~~L~s~--s~Dg~I~vWD~~t~~~i~--------~----~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~ 424 (604)
+|..+...+|+...++. +.+-.|..+|+++-..-. . +.......++.|.|.-. ...++...|+.
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp--~n~av~l~dls 179 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVP--LNSAVDLSDLS 179 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCcc--chhhhhccccc
Confidence 45555666676554433 444578899987543211 1 11122344566666543 45777888999
Q ss_pred EEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeec---CCCCcccEEEEcCCCCEE
Q 007411 425 IVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISE---PHMHSMPSISLHPNTNWL 501 (604)
Q Consensus 425 I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~~v~~l~~sp~g~~l 501 (604)
|++..+........--.....++|++|+|.|..++.|-..|++.-|...-. ....+.. .....|.+|+|.....++
T Consensus 180 l~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~Wl~t~efl 258 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTWLSTQEFL 258 (1405)
T ss_pred hhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEEecceeEE
Confidence 988876543222111124567899999999999999999999998875332 2222222 124679999998777776
Q ss_pred EEEE
Q 007411 502 AAQS 505 (604)
Q Consensus 502 ~s~s 505 (604)
++-+
T Consensus 259 vvy~ 262 (1405)
T KOG3630|consen 259 VVYG 262 (1405)
T ss_pred EEec
Confidence 6543
No 419
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.24 E-value=0.13 Score=36.49 Aligned_cols=34 Identities=9% Similarity=0.268 Sum_probs=29.4
Q ss_pred ccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCee
Q 007411 533 AGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKV 567 (604)
Q Consensus 533 ~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~ 567 (604)
...|..++|+|...+||.|+.+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 455778999999999999999999999998 5543
No 420
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=94.22 E-value=6.6 Score=39.22 Aligned_cols=152 Identities=15% Similarity=0.175 Sum_probs=93.8
Q ss_pred CCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEE---EEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCC
Q 007411 356 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVI---RTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT 432 (604)
Q Consensus 356 h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i---~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s 432 (604)
-.+-+.++.++. ++...+..+.-++|.|+.+.... ..+...+..+++.+. +++..++.-+.-+.++|+.+
T Consensus 85 ~~~l~~Dv~vse--~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vs-----Gn~aYVadlddgfLivdvsd 157 (370)
T COG5276 85 ARDLFADVRVSE--EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVS-----GNYAYVADLDDGFLIVDVSD 157 (370)
T ss_pred hhhhhheeEecc--cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEec-----CCEEEEeeccCcEEEEECCC
Confidence 345567777764 47777778888999999876433 333333333344333 25777777677777888865
Q ss_pred C---ceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCC-cccEEEEcCCCCEEEEEEcCC
Q 007411 433 K---EITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMH-SMPSISLHPNTNWLAAQSLDN 508 (604)
Q Consensus 433 ~---~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~-~v~~l~~sp~g~~l~s~s~Dg 508 (604)
. .+...+....+....+.++ |++-..+..|+-+.+-|+..+.....+..-..+ .+.++..+++..+++.. +-
T Consensus 158 pssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy--~e 233 (370)
T COG5276 158 PSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVY--DE 233 (370)
T ss_pred CCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEc--cc
Confidence 4 3444555455555666665 667777778899999999876544444322333 57777777666555543 33
Q ss_pred eEEEEEcCCc
Q 007411 509 QILIYSTRER 518 (604)
Q Consensus 509 ~I~iwd~~~~ 518 (604)
-+.+-|..+.
T Consensus 234 gvlivd~s~~ 243 (370)
T COG5276 234 GVLIVDVSGP 243 (370)
T ss_pred ceEEEecCCC
Confidence 3555555443
No 421
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.65 E-value=2.4 Score=44.70 Aligned_cols=146 Identities=11% Similarity=0.069 Sum_probs=77.2
Q ss_pred CceeEEEEeCCCCEEEEEe-----------CCC-cEEEEECCC--Ce--EEEEeecCCCCcccEEEEcCCCCEEEEEEcC
Q 007411 444 GAVNTITFVDSNRRFVTSS-----------DDK-SLRVWEFGI--PV--VIKYISEPHMHSMPSISLHPNTNWLAAQSLD 507 (604)
Q Consensus 444 ~~V~~i~~sp~~~~l~sgs-----------~Dg-~I~iwdl~~--~~--~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~D 507 (604)
.....|+|.++|+++++.. ..+ .|.+++-.. ++ ....+.. .......+++.+++ |++++..
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~-~l~~p~Gi~~~~~G--lyV~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE-ELSMVTGLAVAVGG--VYVATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec-CCCCccceeEecCC--EEEeCCC
Confidence 4556788888888777653 223 676665432 22 2223332 33456889999888 4444444
Q ss_pred CeEEEE-EcCCc-----eeecccccccCcc--cccceEEEEEcCCCCEEEEEcCC-------------------CcEEEE
Q 007411 508 NQILIY-STRER-----FQLNKKKRFAGHI--VAGYACQVNFSPDGRFVMSGDGE-------------------GKCWFW 560 (604)
Q Consensus 508 g~I~iw-d~~~~-----~~~~~~~~~~~~~--~~~~v~~l~~spdg~~L~sgs~d-------------------G~I~iw 560 (604)
.|..| +.... ........+.... .......+.|.|||.+.++-+.. |.|.-+
T Consensus 91 -~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~ 169 (367)
T TIGR02604 91 -DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY 169 (367)
T ss_pred -eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence 45444 44321 1111111222110 12335679999999876654421 456666
Q ss_pred eCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEe
Q 007411 561 DWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCG 595 (604)
Q Consensus 561 d~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg 595 (604)
+..+++....-.++ .....++|++ .+.++++-.
T Consensus 170 ~pdg~~~e~~a~G~-rnp~Gl~~d~-~G~l~~tdn 202 (367)
T TIGR02604 170 NPDGGKLRVVAHGF-QNPYGHSVDS-WGDVFFCDN 202 (367)
T ss_pred ecCCCeEEEEecCc-CCCccceECC-CCCEEEEcc
Confidence 66555433222233 2357899999 666666543
No 422
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.59 E-value=2.6 Score=45.86 Aligned_cols=154 Identities=11% Similarity=0.088 Sum_probs=89.6
Q ss_pred CCceeeEEEccCCCEEE-EEE--CCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCC-cEEEEEEcCCeEEEEeCC-
Q 007411 357 SKAVRDISFCNDGTKFL-TAS--YDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQ-NILLAGMSDKKIVQWDMN- 431 (604)
Q Consensus 357 ~~~V~~l~fspdg~~L~-s~s--~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~-~~lvsg~~dg~I~iwD~~- 431 (604)
-.+|..++|. ||+.++ +.- .+|.+++=| ...+..| .....+.|.|..... .-+++......|.+|.+.
T Consensus 19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF---EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF---EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred hccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc---ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 3578889997 555444 332 233333222 2233333 234456666653322 357777788999999875
Q ss_pred ----CCceEEEEcCcC---C--ceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEE
Q 007411 432 ----TKEITQEYDQHL---G--AVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLA 502 (604)
Q Consensus 432 ----s~~~~~~~~~h~---~--~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~ 502 (604)
+++.+.....+- - --..+.|+|....|++-.....-.+++++.............+-|.|.+|.+||..|+
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLV 171 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLV 171 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEE
Confidence 223322221111 1 1246789999888877665554456666544333333335677899999999998877
Q ss_pred EEEc-CCeEEEEEcCC
Q 007411 503 AQSL-DNQILIYSTRE 517 (604)
Q Consensus 503 s~s~-Dg~I~iwd~~~ 517 (604)
++-. .=.-+|||-..
T Consensus 172 VAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 172 VAVGSSLHSYIWDSAQ 187 (671)
T ss_pred EEeCCeEEEEEecCch
Confidence 6643 33467887544
No 423
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.53 E-value=10 Score=43.48 Aligned_cols=74 Identities=14% Similarity=0.188 Sum_probs=52.1
Q ss_pred ceeEEEEeCCCCEEEEEeCCCcEEEEECCCC-----------e--EEEEe-------ecCCCCcccEEEEcCC---CCEE
Q 007411 445 AVNTITFVDSNRRFVTSSDDKSLRVWEFGIP-----------V--VIKYI-------SEPHMHSMPSISLHPN---TNWL 501 (604)
Q Consensus 445 ~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~-----------~--~~~~~-------~~~~~~~v~~l~~sp~---g~~l 501 (604)
.|..|.++++|.+++..|..| |.|..+... . ..+.+ .......|..+.|||. +..|
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 578899999999999888755 555554210 1 11111 1123456889999996 5899
Q ss_pred EEEEcCCeEEEEEcCCce
Q 007411 502 AAQSLDNQILIYSTRERF 519 (604)
Q Consensus 502 ~s~s~Dg~I~iwd~~~~~ 519 (604)
++-+.|+.|++||+....
T Consensus 165 ~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEecCCEEEEEecCCCC
Confidence 999999999999997543
No 424
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.49 E-value=1.6 Score=47.41 Aligned_cols=152 Identities=14% Similarity=0.160 Sum_probs=88.9
Q ss_pred CCceeEEEEeCCCCEEEEEe--CCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCC----CCEEEEEEcCCeEEEEEcC
Q 007411 443 LGAVNTITFVDSNRRFVTSS--DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPN----TNWLAAQSLDNQILIYSTR 516 (604)
Q Consensus 443 ~~~V~~i~~sp~~~~l~sgs--~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~----g~~l~s~s~Dg~I~iwd~~ 516 (604)
-.+|..++|.+..+.+++.- .+|.+++=| ...+. ....|..++|.|- ...|++......|.+|.+.
T Consensus 19 iHPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viG-----qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 19 IHPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIG-----QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred hccccceEecCCCEEEEEeeeeeCCccccCC---ccEee-----ccceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 35788999985444444432 344444322 22333 3345888999985 3344455567889999875
Q ss_pred Cce------eecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCC--CCeeEEEEecCCCcEEEEEEecCCC
Q 007411 517 ERF------QLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK--SCKVFRTLKCHEGVCIGCEWHPLEQ 588 (604)
Q Consensus 517 ~~~------~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~--t~~~~~~l~~h~~~V~~v~~sp~~~ 588 (604)
-.. .......+... ...-...+.|+|....|++-.....-.++++. +.+....++ ..+.|.+.+|.+++.
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~-~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~ 168 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREP-FPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQ 168 (671)
T ss_pred cCccccccceeeeeeeccCC-cccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCC
Confidence 211 01000111000 01112247799999888876665554556654 334444454 456799999999777
Q ss_pred CEEEEEeCCCcEEEeC
Q 007411 589 SKVATCGWDGLIKYWD 604 (604)
Q Consensus 589 ~~l~tgg~DG~I~vWD 604 (604)
+++++.|..=.-+|||
T Consensus 169 RLVVAvGSsLHSyiWd 184 (671)
T PF15390_consen 169 RLVVAVGSSLHSYIWD 184 (671)
T ss_pred EEEEEeCCeEEEEEec
Confidence 7777777766678887
No 425
>PLN02193 nitrile-specifier protein
Probab=93.40 E-value=14 Score=40.33 Aligned_cols=193 Identities=11% Similarity=0.086 Sum_probs=90.9
Q ss_pred CCCEEEEEECC-------CcEEEEECCCCcEEEEeeCCCcce----EEEEccCCCCCcEEEEEEcC-----CeEEEEeCC
Q 007411 368 DGTKFLTASYD-------KNIKYWDTETGQVIRTFSTGKIPY----VVKLNPDDDKQNILLAGMSD-----KKIVQWDMN 431 (604)
Q Consensus 368 dg~~L~s~s~D-------g~I~vWD~~t~~~i~~~~~~~~~~----~~~~~~~~~~~~~lvsg~~d-----g~I~iwD~~ 431 (604)
++.+++.|+.+ ..+.+||+.+.+-...-.....+. ..+.... ++.+++.|+.+ ..+.+||+.
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~--~~~lYvfGG~~~~~~~ndv~~yD~~ 252 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSI--GSTLYVFGGRDASRQYNGFYSFDTT 252 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEE--CCEEEEECCCCCCCCCccEEEEECC
Confidence 44566666643 247788887765443211111111 1111111 22567777654 468899998
Q ss_pred CCceEEEEcC---cC-CceeEEEEeCCCCEEEEEeCCC-----cEEEEECCCCeEEEEeec---CCCCcccEEEEcCCCC
Q 007411 432 TKEITQEYDQ---HL-GAVNTITFVDSNRRFVTSSDDK-----SLRVWEFGIPVVIKYISE---PHMHSMPSISLHPNTN 499 (604)
Q Consensus 432 s~~~~~~~~~---h~-~~V~~i~~sp~~~~l~sgs~Dg-----~I~iwdl~~~~~~~~~~~---~~~~~v~~l~~sp~g~ 499 (604)
+.+-...-.. .. ..-.+++. -++++++.|+.++ .+..||+.+..-...-.. +....-..++. -+++
T Consensus 253 t~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~-~~gk 330 (470)
T PLN02193 253 TNEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEV-VQGK 330 (470)
T ss_pred CCEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEE-ECCc
Confidence 7654332111 01 11122222 2456677776543 467788776543221110 00011122222 2567
Q ss_pred EEEEEEcC----CeEEEEEcCCceeecccccccC-cccccceEEEEEcCCCCEEEEEcCC--------------CcEEEE
Q 007411 500 WLAAQSLD----NQILIYSTRERFQLNKKKRFAG-HIVAGYACQVNFSPDGRFVMSGDGE--------------GKCWFW 560 (604)
Q Consensus 500 ~l~s~s~D----g~I~iwd~~~~~~~~~~~~~~~-~~~~~~v~~l~~spdg~~L~sgs~d--------------G~I~iw 560 (604)
+++.++.+ +.+.+||+.+..-. ....... .........+. -++++++.|+.. ..+.++
T Consensus 331 iyviGG~~g~~~~dv~~yD~~t~~W~-~~~~~g~~P~~R~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~ 407 (470)
T PLN02193 331 VWVVYGFNGCEVDDVHYYDPVQDKWT-QVETFGVRPSERSVFASAA--VGKHIVIFGGEIAMDPLAHVGPGQLTDGTFAL 407 (470)
T ss_pred EEEEECCCCCccCceEEEECCCCEEE-EeccCCCCCCCcceeEEEE--ECCEEEEECCccCCccccccCccceeccEEEE
Confidence 77777655 45889998764321 1111100 00011111222 256677777643 247888
Q ss_pred eCCCCee
Q 007411 561 DWKSCKV 567 (604)
Q Consensus 561 d~~t~~~ 567 (604)
|..+.+-
T Consensus 408 D~~t~~W 414 (470)
T PLN02193 408 DTETLQW 414 (470)
T ss_pred EcCcCEE
Confidence 8877543
No 426
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.26 E-value=4.8 Score=38.19 Aligned_cols=176 Identities=11% Similarity=-0.010 Sum_probs=92.5
Q ss_pred cEEEEEEc--CCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCC-EEEEEeCCCcEEEEECCCCeEEEEeecCCCCccc
Q 007411 414 NILLAGMS--DKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNR-RFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMP 490 (604)
Q Consensus 414 ~~lvsg~~--dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~-~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~ 490 (604)
+++.+.+. ...|++||+.+++.+.+..-....+..--...-+. .....-.+|.-..+|.++.+.+..+. ..+.-.
T Consensus 57 ~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~--y~GeGW 134 (262)
T COG3823 57 HILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS--YEGEGW 134 (262)
T ss_pred EEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc--cCCcce
Confidence 55655544 45799999999987765432211221111111122 23344567888889988877776653 233334
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEEcCCceeeccccc-ccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEE
Q 007411 491 SISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKR-FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFR 569 (604)
Q Consensus 491 ~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~-~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~ 569 (604)
.++ .+++-|+.++...+++.-|..+-.....+.. ..+. .-..++.+.|- +|...+-.-.+..|...+..+|+.+.
T Consensus 135 gLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~-pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~ 210 (262)
T COG3823 135 GLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGV-PVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVA 210 (262)
T ss_pred eee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCe-ecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEE
Confidence 443 3555566665555566555443222211111 1111 00111222221 45444444445556666667777665
Q ss_pred EEe------------cCCCcEEEEEEecCCCCEEEEEe
Q 007411 570 TLK------------CHEGVCIGCEWHPLEQSKVATCG 595 (604)
Q Consensus 570 ~l~------------~h~~~V~~v~~sp~~~~~l~tgg 595 (604)
.+. .|....+.+++.|+..++++||-
T Consensus 211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred EEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence 543 24557789999996667777763
No 427
>PHA02790 Kelch-like protein; Provisional
Probab=93.21 E-value=5.2 Score=43.89 Aligned_cols=145 Identities=8% Similarity=-0.046 Sum_probs=69.0
Q ss_pred CCCEEEEEECCC-----cEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcC--CeEEEEeCCCCceEEEEc
Q 007411 368 DGTKFLTASYDK-----NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD--KKIVQWDMNTKEITQEYD 440 (604)
Q Consensus 368 dg~~L~s~s~Dg-----~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~d--g~I~iwD~~s~~~~~~~~ 440 (604)
++..+++|+.++ .+..||..++.....-.............. ++.+.++|+.+ ..+..||..+++-...-.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~--~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPA--NNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEE--CCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 445566776543 466788877664433222211111111111 23667777753 457888877654322111
Q ss_pred CcCCceeEEEEeCCCCEEEEEeCCC---cEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 007411 441 QHLGAVNTITFVDSNRRFVTSSDDK---SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE 517 (604)
Q Consensus 441 ~h~~~V~~i~~sp~~~~l~sgs~Dg---~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~ 517 (604)
-...........-+++..+.|+.++ .+..||..+..-...-..+....-.+++ .-+++..+.| |.+.+||..+
T Consensus 349 l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~-~~~~~IYv~G---G~~e~ydp~~ 424 (480)
T PHA02790 349 LLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCAL-VFGRRLFLVG---RNAEFYCESS 424 (480)
T ss_pred CCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEE-EECCEEEEEC---CceEEecCCC
Confidence 1111111112223677778877553 4677887665433221111111111222 2356666665 3467788765
Q ss_pred c
Q 007411 518 R 518 (604)
Q Consensus 518 ~ 518 (604)
.
T Consensus 425 ~ 425 (480)
T PHA02790 425 N 425 (480)
T ss_pred C
Confidence 3
No 428
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.16 E-value=4.8 Score=45.03 Aligned_cols=194 Identities=13% Similarity=0.141 Sum_probs=100.4
Q ss_pred CCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEE
Q 007411 313 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVI 392 (604)
Q Consensus 313 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i 392 (604)
.++..+|..+|..-.-++ +.--.|+|+++ .|..+..+.-....+..+.|+.+. .|++...+|++.++++-. ..+
T Consensus 43 ~gGpIAV~r~p~~~~~~~--~a~~~I~If~~--sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~g-e~i 116 (829)
T KOG2280|consen 43 FGGPIAVTRSPSKLVPLY--SARPYIRIFNI--SGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLG-EFI 116 (829)
T ss_pred cCCceEEEeccccccccc--ccceeEEEEec--cccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecch-hhh
Confidence 344556666663111122 33456889987 677766655444588899998654 677788999999999853 222
Q ss_pred EEeeC------CCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcC---cCCceeEEEEeCCCCE---EEE
Q 007411 393 RTFST------GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ---HLGAVNTITFVDSNRR---FVT 460 (604)
Q Consensus 393 ~~~~~------~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~---h~~~V~~i~~sp~~~~---l~s 460 (604)
..+.. .....|..|. + + +++-..+|.+.+..-........+.. ..-+-+|-+..+++.. ++-
T Consensus 117 e~~svg~e~~~~~I~ec~~f~-~---G--Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~ 190 (829)
T KOG2280|consen 117 ESNSVGFESQMSDIVECRFFH-N---G--VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLD 190 (829)
T ss_pred cccccccccccCceeEEEEec-C---c--eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEe
Confidence 22111 1112222222 1 1 55555556665544322222222222 1112233333333221 111
Q ss_pred Ee-CCCcEEEEECCCC-eEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCcee
Q 007411 461 SS-DDKSLRVWEFGIP-VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQ 520 (604)
Q Consensus 461 gs-~Dg~I~iwdl~~~-~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~ 520 (604)
.. ..+ ..++-.... .....+.. ....+..++++|+.++|+.-...|.|.+-+......
T Consensus 191 v~~~v~-~~~~q~~~~~~q~~~~~~-~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~ 250 (829)
T KOG2280|consen 191 VDVAVG-LHICQVEESRVQLHALSW-PNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQI 250 (829)
T ss_pred echhhh-hcccceecccccccccCC-CCceEEEEEEcCCcceEEEEecCCcEEEEecchhhh
Confidence 10 000 011111111 11111211 235678899999999999999999999988765443
No 429
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.09 E-value=2.7 Score=47.02 Aligned_cols=100 Identities=11% Similarity=0.188 Sum_probs=68.8
Q ss_pred cEEEEEEcCCeEEEEeCCCCceEEEEc-CcCCceeEEEEe--CCCCEEEEEeCCCcEEEEECC---------CCeEEEEe
Q 007411 414 NILLAGMSDKKIVQWDMNTKEITQEYD-QHLGAVNTITFV--DSNRRFVTSSDDKSLRVWEFG---------IPVVIKYI 481 (604)
Q Consensus 414 ~~lvsg~~dg~I~iwD~~s~~~~~~~~-~h~~~V~~i~~s--p~~~~l~sgs~Dg~I~iwdl~---------~~~~~~~~ 481 (604)
...++......+.|||.+.+.+...-. ...+.|.++.|. |+++.+++.+-...|.+|--. .-..++.+
T Consensus 42 k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i 121 (631)
T PF12234_consen 42 KIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKI 121 (631)
T ss_pred cEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEE
Confidence 344555556789999999887544332 357889999986 788899999999999988531 11233333
Q ss_pred --ecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEc
Q 007411 482 --SEPHMHSMPSISLHPNTNWLAAQSLDNQILIYST 515 (604)
Q Consensus 482 --~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~ 515 (604)
.....++|...+|.++|.+++.+ ++++.|++-
T Consensus 122 ~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 122 DISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred EeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 22234689999999999655543 577888864
No 430
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=92.85 E-value=2.5 Score=47.29 Aligned_cols=117 Identities=14% Similarity=0.203 Sum_probs=73.8
Q ss_pred CCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEc--CCCCEEEEEEcCCeEEEEEcCCce-
Q 007411 443 LGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLH--PNTNWLAAQSLDNQILIYSTRERF- 519 (604)
Q Consensus 443 ~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~s--p~g~~l~s~s~Dg~I~iwd~~~~~- 519 (604)
...+.-+.-+.-++..++.+....+.|||.+.........-.....|..+.|. |++..+++.+..+.|.+|.-....
T Consensus 29 i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 29 ISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 33445555555555555555566899999998875554443557789999885 688999999999999998642110
Q ss_pred -----eeccccc--ccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeC
Q 007411 520 -----QLNKKKR--FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 562 (604)
Q Consensus 520 -----~~~~~~~--~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~ 562 (604)
....++. +..+ ....|.+..|.++|.+++..+ +.+.|+|-
T Consensus 109 ~~~~p~w~~i~~i~i~~~-T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSH-TPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred hcCCcccceeEEEEeecC-CCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 0001111 1122 124567789999997665543 36777763
No 431
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.70 E-value=9.7 Score=36.47 Aligned_cols=101 Identities=18% Similarity=0.336 Sum_probs=65.7
Q ss_pred EEEEEcCCeEEEEeCC--CCceEEEEcCcCCceeEEEEeCCCCEEEEEeCC------CcEEEE-ECCC------Ce----
Q 007411 416 LLAGMSDKKIVQWDMN--TKEITQEYDQHLGAVNTITFVDSNRRFVTSSDD------KSLRVW-EFGI------PV---- 476 (604)
Q Consensus 416 lvsg~~dg~I~iwD~~--s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~D------g~I~iw-dl~~------~~---- 476 (604)
|+.+...+.|.+|++. ..+....+. --+.|..+.++..|+++++-=.+ ..+|+| +++. +.
T Consensus 31 Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vRi 109 (215)
T PF14761_consen 31 LFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVRI 109 (215)
T ss_pred EEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEEE
Confidence 4444777889999998 335566665 34889999999999999986332 155664 2211 11
Q ss_pred ---------------EEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCc
Q 007411 477 ---------------VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRER 518 (604)
Q Consensus 477 ---------------~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~ 518 (604)
.+..+..|...++.+++..|-..-|++|+ ++.+.+|.+...
T Consensus 110 aG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~ 165 (215)
T PF14761_consen 110 AGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQ 165 (215)
T ss_pred cccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEE
Confidence 12222334556778888888655566655 677889987643
No 432
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=92.48 E-value=5 Score=35.32 Aligned_cols=118 Identities=13% Similarity=0.055 Sum_probs=71.2
Q ss_pred EEEEcCCCCCEEEEEECCCcEEEEecCCCC-------eeeEEecCCCCceeeEEEcc-----CCCEEEEEECCCcEEEEE
Q 007411 318 AIRFFPKYGHLILSAGMDTKVKIWDVVNSG-------KCMRTYMGHSKAVRDISFCN-----DGTKFLTASYDKNIKYWD 385 (604)
Q Consensus 318 ~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~-------~~~~~~~~h~~~V~~l~fsp-----dg~~L~s~s~Dg~I~vWD 385 (604)
.-+|... ...|+.++.-|+|.|++..... ..++.+ .-...|++|+-.+ ....|+.|+ ...|..||
T Consensus 3 iGkfDG~-~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt-~t~llaYD 79 (136)
T PF14781_consen 3 IGKFDGV-HPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYD 79 (136)
T ss_pred EEEeCCC-ceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEE
Confidence 3455555 5578888888999999873221 123333 3556788886544 344666665 46899999
Q ss_pred CCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEE
Q 007411 386 TETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQE 438 (604)
Q Consensus 386 ~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~ 438 (604)
+....-+..........++.+-..+....-++..+.+..|.-||..-.+...+
T Consensus 80 V~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 80 VENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred cccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEE
Confidence 99887665554455555554433333223345555567787777765555444
No 433
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=92.40 E-value=2.1 Score=48.28 Aligned_cols=116 Identities=14% Similarity=0.164 Sum_probs=72.7
Q ss_pred cccEEEEcC--CCCEEEEEEcCCeEEEEEcCCce---------------eecccccccCcccccceEEEEEc--CCCCEE
Q 007411 488 SMPSISLHP--NTNWLAAQSLDNQILIYSTRERF---------------QLNKKKRFAGHIVAGYACQVNFS--PDGRFV 548 (604)
Q Consensus 488 ~v~~l~~sp--~g~~l~s~s~Dg~I~iwd~~~~~---------------~~~~~~~~~~~~~~~~v~~l~~s--pdg~~L 548 (604)
.|+.|.+.- +...|+++..||.|.+|.+..-. .......+.-. ....+..++++ ...++|
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEE
Confidence 344444332 44678999999999999763210 00001112212 23467789998 888999
Q ss_pred EEEcCCCcEEEEeCCC--CeeEEE-EecCCCcEEEEEEecCC--CC---EEEEEeCCCcEEEeC
Q 007411 549 MSGDGEGKCWFWDWKS--CKVFRT-LKCHEGVCIGCEWHPLE--QS---KVATCGWDGLIKYWD 604 (604)
Q Consensus 549 ~sgs~dG~I~iwd~~t--~~~~~~-l~~h~~~V~~v~~sp~~--~~---~l~tgg~DG~I~vWD 604 (604)
|+++....|.||-... .+.... -..|...|-+|+|.+++ +. .|++++-.|.+.+|+
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~ 244 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFK 244 (717)
T ss_pred EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEE
Confidence 9999888888876543 221111 11255578889998754 22 788899999988874
No 434
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=92.24 E-value=6.5 Score=44.53 Aligned_cols=103 Identities=16% Similarity=0.269 Sum_probs=71.0
Q ss_pred CCcEEEEEEcCCeEEEEeCCC-------C----c---------eEEEEcCcCCceeEEEEe--CCCCEEEEEeCCCcEEE
Q 007411 412 KQNILLAGMSDKKIVQWDMNT-------K----E---------ITQEYDQHLGAVNTITFV--DSNRRFVTSSDDKSLRV 469 (604)
Q Consensus 412 ~~~~lvsg~~dg~I~iwD~~s-------~----~---------~~~~~~~h~~~V~~i~~s--p~~~~l~sgs~Dg~I~i 469 (604)
+..+|+++..||.|.+|.+.+ . . +...+ .-...+.+++++ ...++||+++....|.|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV 191 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLIAVSSNSQEVTV 191 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEEEEecCCceEEE
Confidence 346899999999999997631 0 0 11111 123467889998 77888888888888888
Q ss_pred EECCCC--eEEEEeecCCCCcccEEEEcCCC---C---EEEEEEcCCeEEEEEc
Q 007411 470 WEFGIP--VVIKYISEPHMHSMPSISLHPNT---N---WLAAQSLDNQILIYST 515 (604)
Q Consensus 470 wdl~~~--~~~~~~~~~~~~~v~~l~~sp~g---~---~l~s~s~Dg~I~iwd~ 515 (604)
|-+... +....-...+.+.|++|+|-++. . +|++++-.|.+.+|++
T Consensus 192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 766442 11111122467789999998753 2 7888999999999887
No 435
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=92.14 E-value=18 Score=38.14 Aligned_cols=194 Identities=12% Similarity=0.112 Sum_probs=105.2
Q ss_pred CCEEEEEECCCcEEEEecCCCCeeeEEecCC--CCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcceE
Q 007411 326 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGH--SKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV 403 (604)
Q Consensus 326 g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h--~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~ 403 (604)
...++.+..+|.|.-.|. .++..+.....- ...+..-.+..+|+ |+.++.++.+..+|..+|+.+..+..... ..
T Consensus 68 dg~v~~~~~~G~i~A~d~-~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~-~~ 144 (370)
T COG1520 68 DGTVYVGTRDGNIFALNP-DTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGS-PY 144 (370)
T ss_pred CCeEEEecCCCcEEEEeC-CCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCC-eE
Confidence 345555677787777777 455544332211 12333333333665 77788889999999999999998877661 11
Q ss_pred EEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCC---ceeEEEEeCCCCEEEEEeC--CCcEEEEECCCCeEE
Q 007411 404 VKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLG---AVNTITFVDSNRRFVTSSD--DKSLRVWEFGIPVVI 478 (604)
Q Consensus 404 ~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~---~V~~i~~sp~~~~l~sgs~--Dg~I~iwdl~~~~~~ 478 (604)
..-.+. .....++.++.++.+...|..+++....+..... .+..--.. ....++.+.. ++.+.-.|...+...
T Consensus 145 ~~~~~v-~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~-~~~~vy~~~~~~~~~~~a~~~~~G~~~ 222 (370)
T COG1520 145 YASPPV-VGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAI-ASGTVYVGSDGYDGILYALNAEDGTLK 222 (370)
T ss_pred EecCcE-EcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCcee-ecceEEEecCCCcceEEEEEccCCcEe
Confidence 111111 1113455555789999999999988776543221 11111112 2234445544 556777777666655
Q ss_pred EEeecC---CCCcc---cEE---EEcCCCCEEEEEEcCCeEEEEEcCCceeecccc
Q 007411 479 KYISEP---HMHSM---PSI---SLHPNTNWLAAQSLDNQILIYSTRERFQLNKKK 525 (604)
Q Consensus 479 ~~~~~~---~~~~v---~~l---~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~ 525 (604)
-..... ....+ ..+ .+. .+.-++.++.++.+...+..++..+....
T Consensus 223 w~~~~~~~~~~~~~~~~~~~~~~~v~-v~~~~~~~~~~g~~~~l~~~~G~~~W~~~ 277 (370)
T COG1520 223 WSQKVSQTIGRTAISTTPAVDGGPVY-VDGGVYAGSYGGKLLCLDADTGELIWSFP 277 (370)
T ss_pred eeeeeecccCcccccccccccCceEE-ECCcEEEEecCCeEEEEEcCCCceEEEEe
Confidence 442110 10001 011 011 12234566777778888887776654433
No 436
>PLN02153 epithiospecifier protein
Probab=91.96 E-value=17 Score=37.69 Aligned_cols=64 Identities=14% Similarity=0.147 Sum_probs=33.5
Q ss_pred cEEEEEEcC-----CeEEEEeCCCCceEEE--EcC---cCCceeEEEEeCCCCEEEEEeCC-----------CcEEEEEC
Q 007411 414 NILLAGMSD-----KKIVQWDMNTKEITQE--YDQ---HLGAVNTITFVDSNRRFVTSSDD-----------KSLRVWEF 472 (604)
Q Consensus 414 ~~lvsg~~d-----g~I~iwD~~s~~~~~~--~~~---h~~~V~~i~~sp~~~~l~sgs~D-----------g~I~iwdl 472 (604)
.+++.|+.+ ..+.+||+.+.+-... +.. ...........-++++++.|+.+ ..|.+||.
T Consensus 87 ~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~ 166 (341)
T PLN02153 87 KLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNI 166 (341)
T ss_pred EEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEEC
Confidence 566777643 3578899887643321 110 11111112223356677777653 24778888
Q ss_pred CCCeE
Q 007411 473 GIPVV 477 (604)
Q Consensus 473 ~~~~~ 477 (604)
.+..-
T Consensus 167 ~~~~W 171 (341)
T PLN02153 167 ADGKW 171 (341)
T ss_pred CCCeE
Confidence 76543
No 437
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=91.94 E-value=13 Score=37.64 Aligned_cols=170 Identities=11% Similarity=0.168 Sum_probs=90.2
Q ss_pred cEEEEECCCCcEEEEeeCCCcc-------eEEEEccCCC---CCcEEEEEEcCCeEEEEeCCCCceEEEEcCcC------
Q 007411 380 NIKYWDTETGQVIRTFSTGKIP-------YVVKLNPDDD---KQNILLAGMSDKKIVQWDMNTKEITQEYDQHL------ 443 (604)
Q Consensus 380 ~I~vWD~~t~~~i~~~~~~~~~-------~~~~~~~~~~---~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~------ 443 (604)
.|.+||+.+++.++++..+... ..+.+..... .....++-...+.|.++|+.+++..+.+..+.
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 6888999999999888654322 2233333221 12344455556799999999988766654422
Q ss_pred -------------CceeEEEEeC---CCCEEEEEeCCCcEEEEECC-----CCe---------EEEEeecCCCCcccEEE
Q 007411 444 -------------GAVNTITFVD---SNRRFVTSSDDKSLRVWEFG-----IPV---------VIKYISEPHMHSMPSIS 493 (604)
Q Consensus 444 -------------~~V~~i~~sp---~~~~l~sgs~Dg~I~iwdl~-----~~~---------~~~~~~~~~~~~v~~l~ 493 (604)
..+..++.+| +++.|.-..-.+ -++|.+. ... .+..+.. .......++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~-k~~~s~g~~ 192 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGD-KGSQSDGMA 192 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE----SECEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccc-cCCCCceEE
Confidence 1244455544 444444443322 1223221 110 1111111 113567788
Q ss_pred EcCCCCEEEEEEcCCeEEEEEcCCceeecccccc-cCcccccceEEEEEcC--CCCEEEEE
Q 007411 494 LHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRF-AGHIVAGYACQVNFSP--DGRFVMSG 551 (604)
Q Consensus 494 ~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~-~~~~~~~~v~~l~~sp--dg~~L~sg 551 (604)
++++|.++++--..+.|..|+............+ .....-.++..+.+.+ +|.+.+..
T Consensus 193 ~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 193 IDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp EETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred ECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 9999999988889999999998864322222211 1111134566788888 66655544
No 438
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=91.84 E-value=18 Score=37.56 Aligned_cols=71 Identities=21% Similarity=0.313 Sum_probs=41.8
Q ss_pred CcccEEEEcC-------CCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEE
Q 007411 487 HSMPSISLHP-------NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCW 558 (604)
Q Consensus 487 ~~v~~l~~sp-------~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~ 558 (604)
..+..+.|.. .+.+|++.-..+.|....+.....+.....+... ....+..+++.|||.+.++-+.+|.|+
T Consensus 253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGG-FGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTT-SSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEcccc-CCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 4455566553 3445655555678888887644333322332221 133678899999999988888888875
No 439
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=91.64 E-value=21 Score=38.02 Aligned_cols=151 Identities=12% Similarity=0.099 Sum_probs=82.1
Q ss_pred eeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeec--c
Q 007411 446 VNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN--K 523 (604)
Q Consensus 446 V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~--~ 523 (604)
...+..++++.+++.+..-..++-||-... .-..+..+....+..+.+.+++.+++++ ..|.+.. ....+.... .
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~-~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~ 317 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQP-YWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFD 317 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCc-ceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccc
Confidence 344555677766666654333333443221 1122333456678899999998877665 5565544 222221100 0
Q ss_pred cccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEe---cCCCcEEEEEEecCCCCEEEEEeCCCcE
Q 007411 524 KKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK---CHEGVCIGCEWHPLEQSKVATCGWDGLI 600 (604)
Q Consensus 524 ~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~---~h~~~V~~v~~sp~~~~~l~tgg~DG~I 600 (604)
............+..+.|.+++..+++| ..|.+.... ..|+...... .-......+.|.+ ++ .....|.+|.|
T Consensus 318 f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~-~~-~g~~~G~~G~i 393 (398)
T PLN00033 318 FEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFD-DK-KGFVLGNDGVL 393 (398)
T ss_pred eeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcC-CC-ceEEEeCCcEE
Confidence 1111111112346778899888776666 567666553 5555544443 2234678999876 33 45556678888
Q ss_pred EEe
Q 007411 601 KYW 603 (604)
Q Consensus 601 ~vW 603 (604)
.-|
T Consensus 394 l~~ 396 (398)
T PLN00033 394 LRY 396 (398)
T ss_pred EEe
Confidence 765
No 440
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.62 E-value=16 Score=42.45 Aligned_cols=235 Identities=9% Similarity=0.045 Sum_probs=106.3
Q ss_pred CCEEEEEECCCcEEEEecCCCCeeeE--E------e--cCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEe
Q 007411 326 GHLILSAGMDTKVKIWDVVNSGKCMR--T------Y--MGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTF 395 (604)
Q Consensus 326 g~~L~sgs~Dg~I~IWd~~~~~~~~~--~------~--~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~ 395 (604)
+..|..|+.+|.+.+|.+++...... . + .-+..+|+.+...+.-..+++- .|+.|.++++.+-+.....
T Consensus 26 ~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~l-~dsqi~~~~l~~~~~~~~~ 104 (877)
T KOG2063|consen 26 GNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLIL-SDSQIAVHKLPELEPVPSG 104 (877)
T ss_pred CCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchhee-cCCcceeeecCcccccccc
Confidence 78999999999999999865432111 0 0 0135677777776654444443 4678888888765552211
Q ss_pred eC--CCcceEEEEccCCCC-CcEEEEEEcCCe--EEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEE
Q 007411 396 ST--GKIPYVVKLNPDDDK-QNILLAGMSDKK--IVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVW 470 (604)
Q Consensus 396 ~~--~~~~~~~~~~~~~~~-~~~lvsg~~dg~--I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iw 470 (604)
.. +....+....+...+ ..+.++...... ...|+-+.+.....--+-.....+++| .+..+.++-.+....+|
T Consensus 105 ~~~Kg~~~f~~~~~~~s~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~~~~c~~~~~~~~ii~ 182 (877)
T KOG2063|consen 105 TRLKGASLFTIDLRPISTGPSVYEICLSVRKRLIRFFWNGRDGIVLVKELGFPDVPKARAW--CGHIVCLGLKKSYYIIN 182 (877)
T ss_pred cccccceeeccccccccCCcceEEEEeeccceEEEEEecCCCceEEEEecccccchhhhcc--cceeEEEeecceeEEEe
Confidence 11 111111111111111 123333332222 223444333322221111222222222 12222222222222223
Q ss_pred ECCCCeE--EEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEE
Q 007411 471 EFGIPVV--IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFV 548 (604)
Q Consensus 471 dl~~~~~--~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L 548 (604)
.-.++.. +..........-+.|+...++..++.| .|+...+-|............+.. ....+. -+..|+
T Consensus 183 ~~~~~~~~~~~~s~~~~~s~~P~I~~l~~~~~ll~~-kd~~gv~vd~~G~~~~~~~l~ws~-----~P~~v~--~~~PYl 254 (877)
T KOG2063|consen 183 NTSKGVGPNLFPSSMDNESRKPLIKSLSDQSELLLG-KDNIGVVVDLNGIIAQRGTLVWSE-----VPLSVV--VESPYL 254 (877)
T ss_pred cCCCccccceeeeccccccCCCeEEEecCCceEEEc-cCceEEEEecCCcccCCCceEecc-----cchhhc--ccCceE
Confidence 2222211 111111113344556666666566665 677777766543221111111110 011111 134576
Q ss_pred EEEcCCCcEEEEeCCCCeeEEEEe
Q 007411 549 MSGDGEGKCWFWDWKSCKVFRTLK 572 (604)
Q Consensus 549 ~sgs~dG~I~iwd~~t~~~~~~l~ 572 (604)
++-+.. .|.||+..++.+++++.
T Consensus 255 Ia~~~~-~veI~s~~~~qlvQSI~ 277 (877)
T KOG2063|consen 255 IALLDR-SVEIRSKLDGQLVQSIT 277 (877)
T ss_pred EEEccc-cEEEEeccCHHHhhccc
Confidence 666544 99999999998888873
No 441
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=91.59 E-value=19 Score=37.36 Aligned_cols=236 Identities=14% Similarity=0.156 Sum_probs=114.3
Q ss_pred ceeeEEEccCCCEEEEEECCCcEEEEECCCCcE---EEEee-----CCCcceEEEEccCCCCCcEEEEEEc-C-------
Q 007411 359 AVRDISFCNDGTKFLTASYDKNIKYWDTETGQV---IRTFS-----TGKIPYVVKLNPDDDKQNILLAGMS-D------- 422 (604)
Q Consensus 359 ~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~---i~~~~-----~~~~~~~~~~~~~~~~~~~lvsg~~-d------- 422 (604)
.-+.|+|.|+|++|++ ...|.|++++ ..+.. +..+. ......-++++|.-.....|.+... .
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3578999999877665 5699999999 44443 22221 1122345667764323233443333 1
Q ss_pred -CeEEEEeCCCC-------c-eEEEEcC---cCCceeEEEEeCCCCEEEEEeCCCc-------------EEEEECCCCe-
Q 007411 423 -KKIVQWDMNTK-------E-ITQEYDQ---HLGAVNTITFVDSNRRFVTSSDDKS-------------LRVWEFGIPV- 476 (604)
Q Consensus 423 -g~I~iwD~~s~-------~-~~~~~~~---h~~~V~~i~~sp~~~~l~sgs~Dg~-------------I~iwdl~~~~- 476 (604)
..|.-|....+ + ++..+.. .......|.|.|++.++++.++.+. |.-.+.....
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p 160 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIP 160 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCC
Confidence 24544544332 1 1122222 2334567999999987777665432 2222221100
Q ss_pred -----------EEEEeecCCCCcccEEEEcCC-CCEEEEE-EcCCeEEEEEcCCceee----------------------
Q 007411 477 -----------VIKYISEPHMHSMPSISLHPN-TNWLAAQ-SLDNQILIYSTRERFQL---------------------- 521 (604)
Q Consensus 477 -----------~~~~~~~~~~~~v~~l~~sp~-g~~l~s~-s~Dg~I~iwd~~~~~~~---------------------- 521 (604)
....+..++ .....++|+|. |.++++- +.++.=.|.-+..+...
T Consensus 161 ~dnP~~~~~~~~~~i~A~Gl-RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~ 239 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYAYGL-RNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSC 239 (331)
T ss_dssp TTSTTTTSTTSTTTEEEE---SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-
T ss_pred CCCccccCCCceEEEEEeCC-CccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCC
Confidence 000001111 12457899998 5544432 22222222222221100
Q ss_pred ----cccccccCcccccceEEEEEcC-------CCCEEEEEcCCCcEEEEeCCCCeeEEEE----ecCCCcEEEEEEecC
Q 007411 522 ----NKKKRFAGHIVAGYACQVNFSP-------DGRFVMSGDGEGKCWFWDWKSCKVFRTL----KCHEGVCIGCEWHPL 586 (604)
Q Consensus 522 ----~~~~~~~~~~~~~~v~~l~~sp-------dg~~L~sgs~dG~I~iwd~~t~~~~~~l----~~h~~~V~~v~~sp~ 586 (604)
.....+..| ..+..+.|-. .|.++++.-..+.|....+.....+... ......+.++++.|
T Consensus 240 ~~~~~P~~~~~~~---~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~p- 315 (331)
T PF07995_consen 240 PGFVPPVFAYPPH---SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGP- 315 (331)
T ss_dssp TTS---SEEETTT-----EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEET-
T ss_pred CCcCccceeecCc---cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcC-
Confidence 000011111 2344555543 4567777777788888888755332221 23444799999999
Q ss_pred CCCEEEEEeCCCcEE
Q 007411 587 EQSKVATCGWDGLIK 601 (604)
Q Consensus 587 ~~~~l~tgg~DG~I~ 601 (604)
++.+.++-+.+|.|.
T Consensus 316 DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 316 DGALYVSDDSDGKIY 330 (331)
T ss_dssp TSEEEEEE-TTTTEE
T ss_pred CCeEEEEECCCCeEe
Confidence 677888877888874
No 442
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.57 E-value=0.78 Score=31.74 Aligned_cols=31 Identities=29% Similarity=0.375 Sum_probs=27.3
Q ss_pred CCeEEEEEcCCCC--CEEEEEECCCcEEEEecC
Q 007411 314 KGVSAIRFFPKYG--HLILSAGMDTKVKIWDVV 344 (604)
Q Consensus 314 ~~V~~l~fsp~~g--~~L~sgs~Dg~I~IWd~~ 344 (604)
+.|.+++|+|..+ .+|+.+-.-|.|.|+|+.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R 33 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTR 33 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence 4689999998766 799999999999999994
No 443
>PLN02153 epithiospecifier protein
Probab=91.39 E-value=20 Score=37.24 Aligned_cols=146 Identities=8% Similarity=0.034 Sum_probs=70.3
Q ss_pred CCCEEEEEECC-----CcEEEEECCCCcEEEEeeC-----CCcceEEEEccCCCCCcEEEEEEcC-----------CeEE
Q 007411 368 DGTKFLTASYD-----KNIKYWDTETGQVIRTFST-----GKIPYVVKLNPDDDKQNILLAGMSD-----------KKIV 426 (604)
Q Consensus 368 dg~~L~s~s~D-----g~I~vWD~~t~~~i~~~~~-----~~~~~~~~~~~~~~~~~~lvsg~~d-----------g~I~ 426 (604)
++.+++.|+.+ ..+.+||+.+.+-...-.. ............ ++.+++.|+.+ ..|.
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~v~ 162 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASD--ENHVYVFGGVSKGGLMKTPERFRTIE 162 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEE--CCEEEEECCccCCCccCCCcccceEE
Confidence 56677777753 3577889887654332111 111111111111 22566776643 2577
Q ss_pred EEeCCCCceEEEEcCc----CC-ceeEEEEeCCCCEEEEEeCC-------------CcEEEEECCCCeEEEEeec---CC
Q 007411 427 QWDMNTKEITQEYDQH----LG-AVNTITFVDSNRRFVTSSDD-------------KSLRVWEFGIPVVIKYISE---PH 485 (604)
Q Consensus 427 iwD~~s~~~~~~~~~h----~~-~V~~i~~sp~~~~l~sgs~D-------------g~I~iwdl~~~~~~~~~~~---~~ 485 (604)
+||+.+.+-.. +... .. .-.+++. -++++++.++.+ ..|.+||+.+.+-...... +.
T Consensus 163 ~yd~~~~~W~~-l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~ 240 (341)
T PLN02153 163 AYNIADGKWVQ-LPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPS 240 (341)
T ss_pred EEECCCCeEee-CCCCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCC
Confidence 88988764332 1111 11 1112222 245566655432 4588899877654332111 11
Q ss_pred CCcccEEEEcCCCCEEEEEEcC--------------CeEEEEEcCCc
Q 007411 486 MHSMPSISLHPNTNWLAAQSLD--------------NQILIYSTRER 518 (604)
Q Consensus 486 ~~~v~~l~~sp~g~~l~s~s~D--------------g~I~iwd~~~~ 518 (604)
.....++ ...++++++.|+.. +.|..||+.+.
T Consensus 241 ~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~ 286 (341)
T PLN02153 241 ARSVFAH-AVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETL 286 (341)
T ss_pred Ccceeee-EEECCEEEEECcccCCccccccccccccccEEEEEcCcc
Confidence 1111222 22356777777742 25777887654
No 444
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=91.33 E-value=2 Score=45.67 Aligned_cols=90 Identities=9% Similarity=0.098 Sum_probs=62.9
Q ss_pred EEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCC-----------------CC
Q 007411 351 RTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDD-----------------KQ 413 (604)
Q Consensus 351 ~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~-----------------~~ 413 (604)
..+......+.+|+.+|++++.++...=|.|.|+|+.++..++.++.-....|.-+..... ..
T Consensus 301 ~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l 380 (415)
T PF14655_consen 301 FGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFAL 380 (415)
T ss_pred EeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceE
Confidence 3445556678999999999988888778999999999999888876654443322211111 11
Q ss_pred cEEEEEEcCCeEEEEeCCCCceEEEEc
Q 007411 414 NILLAGMSDKKIVQWDMNTKEITQEYD 440 (604)
Q Consensus 414 ~~lvsg~~dg~I~iwD~~s~~~~~~~~ 440 (604)
.+++-+-.-|.|-+|.+++|..+..+.
T Consensus 381 ~LvIyaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 381 FLVIYAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred EEEEEeccCCeEEEEecCCCCEEEEEE
Confidence 234556678999999999887766553
No 445
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=90.97 E-value=22 Score=36.96 Aligned_cols=51 Identities=6% Similarity=0.055 Sum_probs=25.6
Q ss_pred cEEEEEEcC-----------CeEEEEeCCCCceEEEEcCcCCceeE--EEEeCCCCEEEEEeCC
Q 007411 414 NILLAGMSD-----------KKIVQWDMNTKEITQEYDQHLGAVNT--ITFVDSNRRFVTSSDD 464 (604)
Q Consensus 414 ~~lvsg~~d-----------g~I~iwD~~s~~~~~~~~~h~~~V~~--i~~sp~~~~l~sgs~D 464 (604)
.+.++|+.+ ..+..||+.+.+-...-........+ ....-++++++.|+.+
T Consensus 65 ~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 65 KLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred EEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 567777653 24778888776533221111111111 1112467777777754
No 446
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=90.44 E-value=4.9 Score=42.96 Aligned_cols=140 Identities=16% Similarity=0.206 Sum_probs=85.8
Q ss_pred cEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCC--------CEEEEEeCCCcEEEEECCCCe-EEEEe--e
Q 007411 414 NILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSN--------RRFVTSSDDKSLRVWEFGIPV-VIKYI--S 482 (604)
Q Consensus 414 ~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~--------~~l~sgs~Dg~I~iwdl~~~~-~~~~~--~ 482 (604)
-++..|.....++-.|+..|+.+.....|..- -+.+.|.. +.|+ |-.+..|.-.|.+... .+... .
T Consensus 481 li~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v~esK 557 (776)
T COG5167 481 LIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKVVESK 557 (776)
T ss_pred eEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCceeeeeeh
Confidence 44556677788999999999999998877665 46676643 2344 4445556556655332 11111 1
Q ss_pred c-CCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEe
Q 007411 483 E-PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 561 (604)
Q Consensus 483 ~-~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd 561 (604)
. .......+..-. ...++++++..|.|++||--...- ...+++. ...|..+..+.+|.+|++.+.. .|.+-|
T Consensus 558 dY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rA---KtalP~l--G~aIk~idvta~Gk~ilaTCk~-yllL~d 630 (776)
T COG5167 558 DYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRA---KTALPGL--GDAIKHIDVTANGKHILATCKN-YLLLTD 630 (776)
T ss_pred hccccccccccccc-cCceEEEecCCCceeeehhhcchh---hhcCccc--ccceeeeEeecCCcEEEEeecc-eEEEEe
Confidence 1 112223333322 456899999999999998643221 1222222 4456678899999998877644 677776
Q ss_pred CC
Q 007411 562 WK 563 (604)
Q Consensus 562 ~~ 563 (604)
++
T Consensus 631 ~~ 632 (776)
T COG5167 631 VP 632 (776)
T ss_pred cc
Confidence 53
No 447
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=90.43 E-value=26 Score=36.90 Aligned_cols=144 Identities=13% Similarity=0.200 Sum_probs=76.5
Q ss_pred CCeEEEEEcCCCCCEEEEEE-----------CCC-cEEEEecCC-CCee--eEEecCCCCceeeEEEccCCCEEEEEECC
Q 007411 314 KGVSAIRFFPKYGHLILSAG-----------MDT-KVKIWDVVN-SGKC--MRTYMGHSKAVRDISFCNDGTKFLTASYD 378 (604)
Q Consensus 314 ~~V~~l~fsp~~g~~L~sgs-----------~Dg-~I~IWd~~~-~~~~--~~~~~~h~~~V~~l~fspdg~~L~s~s~D 378 (604)
.....|+|.++ |+++++-. ..+ .|.+++-.+ +++. ...+.......+.|++.++| +++ ++..
T Consensus 14 ~~P~~ia~d~~-G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDER-GRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECCC-CCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCC
Confidence 34677899998 77776643 223 677765422 2332 23444344456889999888 444 4444
Q ss_pred CcEEEEECCCC-----c--EE-EEeeC-----CCcceEEEEccCCCCCcEEEEEEc-------------------CCeEE
Q 007411 379 KNIKYWDTETG-----Q--VI-RTFST-----GKIPYVVKLNPDDDKQNILLAGMS-------------------DKKIV 426 (604)
Q Consensus 379 g~I~vWD~~t~-----~--~i-~~~~~-----~~~~~~~~~~~~~~~~~~lvsg~~-------------------dg~I~ 426 (604)
..+++.|.... + .+ ..+.. .+....+.+.+++ .+.++-+. .|.|.
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG---~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~ 167 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG---WLYFNHGNTLASKVTRPGTSDESRQGLGGGLF 167 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCC---CEEEecccCCCceeccCCCccCcccccCceEE
Confidence 43334455321 1 11 22322 2334455665543 33333221 14566
Q ss_pred EEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCC
Q 007411 427 QWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDD 464 (604)
Q Consensus 427 iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~D 464 (604)
.++...++.. .+.........++|+++++++++-..+
T Consensus 168 r~~pdg~~~e-~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 168 RYNPDGGKLR-VVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred EEecCCCeEE-EEecCcCCCccceECCCCCEEEEccCC
Confidence 6776655433 232223445789999999887765433
No 448
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=90.36 E-value=21 Score=35.80 Aligned_cols=273 Identities=10% Similarity=0.071 Sum_probs=144.1
Q ss_pred CCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEec-CCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCc-
Q 007411 313 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYM-GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ- 390 (604)
Q Consensus 313 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~-~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~- 390 (604)
.+-+..++++ ++++..+..+.-++|.|+.....+...-. ...+--+++. -.|++...+..|.-+.+.|+.+.+
T Consensus 86 ~~l~~Dv~vs---e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~--vsGn~aYVadlddgfLivdvsdpss 160 (370)
T COG5276 86 RDLFADVRVS---EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVY--VSGNYAYVADLDDGFLIVDVSDPSS 160 (370)
T ss_pred hhhhheeEec---ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEE--ecCCEEEEeeccCcEEEEECCCCCC
Confidence 3446677776 55788888888899999965443332211 1113233333 468898888877777788886543
Q ss_pred --EEEEeeCCCcc-eEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCc---eEEEEcCcCCceeEEEEeCCCCEEEEEeCC
Q 007411 391 --VIRTFSTGKIP-YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE---ITQEYDQHLGAVNTITFVDSNRRFVTSSDD 464 (604)
Q Consensus 391 --~i~~~~~~~~~-~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~---~~~~~~~h~~~V~~i~~sp~~~~l~sgs~D 464 (604)
...+....... .-+.++ +++...+..|+-+.+.|+.... .+..+. ....+.++..+++.-+++.. +
T Consensus 161 P~lagrya~~~~d~~~v~IS-----Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr~y~vvy--~ 232 (370)
T COG5276 161 PQLAGRYALPGGDTHDVAIS-----GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNRAYLVVY--D 232 (370)
T ss_pred ceeeeeeccCCCCceeEEEe-----cCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCeeEEEEc--c
Confidence 22222222111 222222 2567778889999999987642 333332 23367777777665444443 3
Q ss_pred CcEEEEECCCCeEEEEeecCCCCcccEE-EEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcC
Q 007411 465 KSLRVWEFGIPVVIKYISEPHMHSMPSI-SLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP 543 (604)
Q Consensus 465 g~I~iwdl~~~~~~~~~~~~~~~~v~~l-~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp 543 (604)
--+.+-|...+.....+..-....+.++ .+.-.+++......+.-+.+.|+.+.........+... ......+..
T Consensus 233 egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~--g~~a~gi~a-- 308 (370)
T COG5276 233 EGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTA--GYQAAGIRA-- 308 (370)
T ss_pred cceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCC--CccccceEE--
Confidence 3467777776654333322222222222 23334667777777777777777654322111111100 001112222
Q ss_pred CCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007411 544 DGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 544 dg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
-|.++..+..+ ...+-+....+......+....+.++..+- ..+.+.+..++|-+.||+
T Consensus 309 y~~y~yiadkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~-~~q~~y~~d~~~gl~i~~ 367 (370)
T COG5276 309 YGNYNYIADKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSV-DTQIIYSTDYNGGLSIIE 367 (370)
T ss_pred ecCeeEeccCC-ceEEEeCCChhhcccccCcceEeeecceEE-EeeEEEEeecCCCEEEEE
Confidence 34555555554 444555444333222222222233343333 334788888999998886
No 449
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.22 E-value=8.2 Score=43.31 Aligned_cols=178 Identities=10% Similarity=0.138 Sum_probs=92.3
Q ss_pred CCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEe----cCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCC
Q 007411 314 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTY----MGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG 389 (604)
Q Consensus 314 ~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~----~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~ 389 (604)
+.+..+.|+.+ +-|+.-..+|++++|++ .+..+..+ ......|..+.|..+|-.+++. +|.+.+-.-...
T Consensus 84 ~~lI~mgWs~~--eeLI~v~k~g~v~Vy~~--~ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt~--~g~v~~i~~~~~ 157 (829)
T KOG2280|consen 84 GELIGMGWSDD--EELICVQKDGTVHVYGL--LGEFIESNSVGFESQMSDIVECRFFHNGVAVLTV--SGQVILINGVEE 157 (829)
T ss_pred CCeeeecccCC--ceEEEEeccceEEEeec--chhhhcccccccccccCceeEEEEecCceEEEec--CCcEEEEcCCCc
Confidence 37889999977 66777889999999998 34433332 1223345555555566444443 345544332222
Q ss_pred cEEEEeeC---CCcc-eEEEEccCCCCCcEEEEEE-cCCeEEEEeCCCC-ceEEEEcCcCCceeEEEEeCCCCEEEEEeC
Q 007411 390 QVIRTFST---GKIP-YVVKLNPDDDKQNILLAGM-SDKKIVQWDMNTK-EITQEYDQHLGAVNTITFVDSNRRFVTSSD 463 (604)
Q Consensus 390 ~~i~~~~~---~~~~-~~~~~~~~~~~~~~lvsg~-~dg~I~iwD~~s~-~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~ 463 (604)
..++.+.. .... .|..+...+....+++-.. ..+ ..++..... .....+....+.+.-+.++|+.++|+.-..
T Consensus 158 ~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~ 236 (829)
T KOG2280|consen 158 PKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTE 236 (829)
T ss_pred chhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEec
Confidence 22222221 1111 2333333222112222111 111 011111111 112222223466788999999999999999
Q ss_pred CCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCC
Q 007411 464 DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNT 498 (604)
Q Consensus 464 Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g 498 (604)
.|.|.+-+....+....+..+...+...++|..+.
T Consensus 237 ~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 237 TGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred CCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence 99999988877666655543333334456665433
No 450
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=90.15 E-value=17 Score=37.60 Aligned_cols=149 Identities=13% Similarity=0.195 Sum_probs=86.1
Q ss_pred cCCceeEEEEeCCCCEEEEEeCCCc------EEEEECCCC----eEEE-----EeecCCCC-------cccEEEEcCCCC
Q 007411 442 HLGAVNTITFVDSNRRFVTSSDDKS------LRVWEFGIP----VVIK-----YISEPHMH-------SMPSISLHPNTN 499 (604)
Q Consensus 442 h~~~V~~i~~sp~~~~l~sgs~Dg~------I~iwdl~~~----~~~~-----~~~~~~~~-------~v~~l~~sp~g~ 499 (604)
.-+.++.|.+.+++..+++.|++|. +..+++... ..+. .+..+... ..-+|++.+++.
T Consensus 18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 4467888999977778888888888 666665431 1111 11111111 334788877888
Q ss_pred EEEEEEcC------CeEEEEEcCCceeeccc---ccc-------cCcccccceEEEEEcCCCCEEEEEcC-----CC---
Q 007411 500 WLAAQSLD------NQILIYSTRERFQLNKK---KRF-------AGHIVAGYACQVNFSPDGRFVMSGDG-----EG--- 555 (604)
Q Consensus 500 ~l~s~s~D------g~I~iwd~~~~~~~~~~---~~~-------~~~~~~~~v~~l~~spdg~~L~sgs~-----dG--- 555 (604)
++++.-.+ ..|+.++.. +.....+ ..+ .+.......-.++++|+|+.|+++.. |+
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 77777667 788888866 3222222 111 22233455678999999996665432 22
Q ss_pred --------cEEEEeCCC-CeeEEEE--ec-------CCCcEEEEEEecCCCCEEE
Q 007411 556 --------KCWFWDWKS-CKVFRTL--KC-------HEGVCIGCEWHPLEQSKVA 592 (604)
Q Consensus 556 --------~I~iwd~~t-~~~~~~l--~~-------h~~~V~~v~~sp~~~~~l~ 592 (604)
+|..||..+ +.....+ .. ....|..+.+.+ ++.+|+
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~-d~~lLv 230 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALP-DGRLLV 230 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEEC-CCcEEE
Confidence 234455554 3222222 21 245688899988 555554
No 451
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=90.14 E-value=33 Score=37.61 Aligned_cols=199 Identities=13% Similarity=0.104 Sum_probs=97.9
Q ss_pred CceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCC--CcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCce
Q 007411 358 KAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG--KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI 435 (604)
Q Consensus 358 ~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~--~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~ 435 (604)
..|.++....+|. |.+++.+|.+++-+-+ ......+... .....+...+.... .-+-...+-|.+.+-+-.++..
T Consensus 290 S~vnsL~~D~dGs-LWv~t~~giv~~~~a~-w~~ma~in~~dG~v~~~~~~a~~ll~-~~v~~~ns~g~L~van~stG~~ 366 (671)
T COG3292 290 STVNSLWLDTDGS-LWVGTYGGIVRYLTAD-WKRMAVINDSDGGVSQYEAVAPALLS-WGVRQLNSIGELMVANGSTGEL 366 (671)
T ss_pred ccccceeeccCCC-EeeeccCceEEEecch-hhheeeeecCCCchhhhhccCchhcc-cceeeccccceEEEecCCCCcE
Confidence 3466666666775 6666776666554332 1111111111 11111111111000 1122222334445555556655
Q ss_pred EEEEcC-cCCceeEEEEeCCCCEEEEEeCCCcEEEEECCC-CeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEE
Q 007411 436 TQEYDQ-HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGI-PVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIY 513 (604)
Q Consensus 436 ~~~~~~-h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~-~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iw 513 (604)
+..... ....|+.+++.. ...+..++...-+..|+..+ ..............|..|.-.|+++ |..|+.+|.++.=
T Consensus 367 v~sv~q~Rg~nit~~~~d~-~g~lWlgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~~ 444 (671)
T COG3292 367 VRSVHQLRGMNITTTLEDS-RGRLWLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKRD 444 (671)
T ss_pred EEEeeeccccccchhhhcc-CCcEEEEecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEecC
Confidence 554322 224466666666 44566666664466677666 3333344444566788888888888 8888888866542
Q ss_pred EcCCceeecccccccCc-ccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCC
Q 007411 514 STRERFQLNKKKRFAGH-IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC 565 (604)
Q Consensus 514 d~~~~~~~~~~~~~~~~-~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~ 565 (604)
..... ......+..+ .....+..+.+.|+|++-+..+ +| |..|+.+..
T Consensus 445 -pe~~~-v~n~ln~~~~~l~~s~~~~lg~~~~g~Lw~a~g-~g-va~~~sq~~ 493 (671)
T COG3292 445 -PESGR-VLNLLNPGSHGLDGSRVEQLGLGPDGRLWLAAG-SG-VAAWESQRR 493 (671)
T ss_pred -ccccc-hhcccccccCcCCcchhhhhccCCCCceEEEec-ce-eeeeccccc
Confidence 22211 1111111111 1134566788899987644332 32 577775443
No 452
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.69 E-value=7.7 Score=41.68 Aligned_cols=96 Identities=11% Similarity=0.153 Sum_probs=53.1
Q ss_pred ceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEE
Q 007411 359 AVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQE 438 (604)
Q Consensus 359 ~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~ 438 (604)
.|..+..++.|..++-++.+|.+..+=.+....-..+..++....+...+.+. .|++.+
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~---~~ftss------------------ 163 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAE---RFFTSS------------------ 163 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccc---eeeccC------------------
Confidence 36677788889988888888865554322222222333333222222222111 111111
Q ss_pred EcCcCCceeEEEEeCCC---CEEEEEeCCCcEEEEECCCCeEE
Q 007411 439 YDQHLGAVNTITFVDSN---RRFVTSSDDKSLRVWEFGIPVVI 478 (604)
Q Consensus 439 ~~~h~~~V~~i~~sp~~---~~l~sgs~Dg~I~iwdl~~~~~~ 478 (604)
..-.+..+.|+|+. ..|+.-+.|..||+||+.....+
T Consensus 164 ---~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 164 ---TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred ---CceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchh
Confidence 11234556777764 56777788899999998776655
No 453
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=89.51 E-value=27 Score=35.84 Aligned_cols=106 Identities=8% Similarity=0.013 Sum_probs=53.9
Q ss_pred CCCEEEEEECC-----CcEEEEECCCCcEE---EEeeC---CCcceEEEEccCCCCCcEEEEEEc-----CCeEEEEeCC
Q 007411 368 DGTKFLTASYD-----KNIKYWDTETGQVI---RTFST---GKIPYVVKLNPDDDKQNILLAGMS-----DKKIVQWDMN 431 (604)
Q Consensus 368 dg~~L~s~s~D-----g~I~vWD~~t~~~i---~~~~~---~~~~~~~~~~~~~~~~~~lvsg~~-----dg~I~iwD~~ 431 (604)
++.+++.|+.+ ..+..+|+.+.+.. ..+.. .......... ++.+++.|+. ...+..||+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~----~~~iYv~GG~~~~~~~~~v~~yd~~ 147 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK----DGTLYVGGGNRNGKPSNKSYLFNLE 147 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE----CCEEEEEeCcCCCccCceEEEEcCC
Confidence 55667777764 35666777766531 11111 1111122221 2256666664 2468889988
Q ss_pred CCceEEEEcCc-CCceeEEEEeCCCCEEEEEeCCC----cEEEEECCCCeE
Q 007411 432 TKEITQEYDQH-LGAVNTITFVDSNRRFVTSSDDK----SLRVWEFGIPVV 477 (604)
Q Consensus 432 s~~~~~~~~~h-~~~V~~i~~sp~~~~l~sgs~Dg----~I~iwdl~~~~~ 477 (604)
+.+-...-.-. ..........-++++++.|+.++ .+.+||..+..-
T Consensus 148 ~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 148 TQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred CCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 76533221111 11122222334667788887654 356788876553
No 454
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=89.39 E-value=24 Score=35.01 Aligned_cols=150 Identities=11% Similarity=0.121 Sum_probs=82.5
Q ss_pred ceEEEEccCCCCCcEEEEEE--cCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEE-CCCCeE
Q 007411 401 PYVVKLNPDDDKQNILLAGM--SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWE-FGIPVV 477 (604)
Q Consensus 401 ~~~~~~~~~~~~~~~lvsg~--~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwd-l~~~~~ 477 (604)
.....+++++. .+.++.. ....|+++.. +....... ....+..-.|.+++...+....+...+++. ...+..
T Consensus 26 ~~s~AvS~dg~--~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 26 VTSPAVSPDGS--RVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred ccceEECCCCC--eEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence 44555665542 3333332 3344555443 32222221 233778889999987777766666667763 222222
Q ss_pred E-EEeecCCCC-cccEEEEcCCCCEEEEEE---cCCeEEEEEcCCce-----eecccccccCcccccceEEEEEcCCCCE
Q 007411 478 I-KYISEPHMH-SMPSISLHPNTNWLAAQS---LDNQILIYSTRERF-----QLNKKKRFAGHIVAGYACQVNFSPDGRF 547 (604)
Q Consensus 478 ~-~~~~~~~~~-~v~~l~~sp~g~~l~s~s---~Dg~I~iwd~~~~~-----~~~~~~~~~~~~~~~~v~~l~~spdg~~ 547 (604)
. ..+...... .|..+.++|+|..++... .++.|.+--+.... .+...... .......+..+.|.+++.+
T Consensus 101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~-~~~~~~~v~~v~W~~~~~L 179 (253)
T PF10647_consen 101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRV-APPLLSDVTDVAWSDDSTL 179 (253)
T ss_pred eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEe-cccccCcceeeeecCCCEE
Confidence 1 222222222 899999999999888776 34777776543111 11000111 1111346788999999998
Q ss_pred EEEEcCCCc
Q 007411 548 VMSGDGEGK 556 (604)
Q Consensus 548 L~sgs~dG~ 556 (604)
++.+...+.
T Consensus 180 ~V~~~~~~~ 188 (253)
T PF10647_consen 180 VVLGRSAGG 188 (253)
T ss_pred EEEeCCCCC
Confidence 887765543
No 455
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=88.95 E-value=29 Score=35.41 Aligned_cols=142 Identities=9% Similarity=0.093 Sum_probs=69.2
Q ss_pred CcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEEC-CCCeEEEE-eec--CCCCc
Q 007411 413 QNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEF-GIPVVIKY-ISE--PHMHS 488 (604)
Q Consensus 413 ~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl-~~~~~~~~-~~~--~~~~~ 488 (604)
+.+++++.....+.-||.-...-...-..-...|..|.|.|++.+.+.+ ..|.|++=+. ........ +.. .....
T Consensus 156 G~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~ 234 (302)
T PF14870_consen 156 GRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYG 234 (302)
T ss_dssp S-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-
T ss_pred CcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCcee
Confidence 3566666555555677765432233333356789999999998766654 7888888772 22222211 111 12334
Q ss_pred ccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEE
Q 007411 489 MPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFW 560 (604)
Q Consensus 489 v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iw 560 (604)
+..+++.+++...++|+ .|.+ +.+...+..-.+...... .......+.|.++.+-++.| .+|.|.-|
T Consensus 235 ~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~--~~~n~~~i~f~~~~~gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 235 ILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGEN--VPSNLYRIVFVNPDKGFVLG-QDGVLLRY 301 (302)
T ss_dssp EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTT--SSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred eEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccC--CCCceEEEEEcCCCceEEEC-CCcEEEEe
Confidence 78889998877777655 4433 344555544333222111 13445667887665555554 67776654
No 456
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=88.94 E-value=42 Score=40.34 Aligned_cols=80 Identities=18% Similarity=0.157 Sum_probs=40.8
Q ss_pred cCCCCCeEEEEEcCC--CCCE----EEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEc---cC-CCEEEEEECCC
Q 007411 310 SGHTKGVSAIRFFPK--YGHL----ILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFC---ND-GTKFLTASYDK 379 (604)
Q Consensus 310 ~gH~~~V~~l~fsp~--~g~~----L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fs---pd-g~~L~s~s~Dg 379 (604)
.||...|-|..+.-. +.++ .+..+-||.+.|=|. ..++.+.......+-+.+. +. .-+++..--||
T Consensus 344 dG~qR~veC~~C~G~a~~~~L~aPvala~a~DGSl~VGDf----NyIRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdg 419 (1899)
T KOG4659|consen 344 DGHQRDVECPKCEGKADSISLFAPVALAYAPDGSLIVGDF----NYIRRISQDGQVSTILTLGLTDTSHSYYIAVSPVDG 419 (1899)
T ss_pred CcccccccCCCCCCccccceeeceeeEEEcCCCcEEEccc----hheeeecCCCceEEEEEecCCCccceeEEEecCcCc
Confidence 468888877765421 1122 234567888888665 2333333222222222222 11 22455555677
Q ss_pred cEEEEECCCCcEEE
Q 007411 380 NIKYWDTETGQVIR 393 (604)
Q Consensus 380 ~I~vWD~~t~~~i~ 393 (604)
++.|=|..+.+..+
T Consensus 420 tlyvSdp~s~qv~r 433 (1899)
T KOG4659|consen 420 TLYVSDPLSKQVWR 433 (1899)
T ss_pred eEEecCCCcceEEE
Confidence 77777766655544
No 457
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=88.79 E-value=9.4 Score=37.58 Aligned_cols=147 Identities=17% Similarity=0.171 Sum_probs=80.2
Q ss_pred EEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCC---CcEEEEECCC---CeEEEEee--cCCCCcccEEEEcC
Q 007411 425 IVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDD---KSLRVWEFGI---PVVIKYIS--EPHMHSMPSISLHP 496 (604)
Q Consensus 425 I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~D---g~I~iwdl~~---~~~~~~~~--~~~~~~v~~l~~sp 496 (604)
-.+||+.+++....--....-+.+-.+.++|++|++|+.. ..+++++... ........ .....--.++..-|
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 4578988876543322233334445677899999988752 3578887543 11111100 11222345566778
Q ss_pred CCCEEEEEEcCCe-EEEEEcCCc-eeecc---cccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEE
Q 007411 497 NTNWLAAQSLDNQ-ILIYSTRER-FQLNK---KKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTL 571 (604)
Q Consensus 497 ~g~~l~s~s~Dg~-I~iwd~~~~-~~~~~---~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l 571 (604)
||+.|++|+.... ..+|..... ..... ............--.+...|+|++++.+..+ -.|||..+.+.++.+
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~~l 205 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVRTL 205 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEeeC
Confidence 9999999987743 334433211 00100 1101001111112236778999999988765 456688888776666
Q ss_pred ec
Q 007411 572 KC 573 (604)
Q Consensus 572 ~~ 573 (604)
..
T Consensus 206 P~ 207 (243)
T PF07250_consen 206 PD 207 (243)
T ss_pred CC
Confidence 53
No 458
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.57 E-value=11 Score=39.86 Aligned_cols=141 Identities=13% Similarity=0.056 Sum_probs=82.2
Q ss_pred eEEEEeCCCCEEEEEeCCCcEEEEECCCCe--EEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeccc
Q 007411 447 NTITFVDSNRRFVTSSDDKSLRVWEFGIPV--VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKK 524 (604)
Q Consensus 447 ~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~--~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~ 524 (604)
+.+-|...++.|++.. .|.+.-|-...+. ....+.....++|.++.|++|.+.||+.-.++.|.+++........ .
T Consensus 26 ngvFfDDaNkqlfavr-SggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l-~ 103 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAVR-SGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL-E 103 (657)
T ss_pred cceeeccCcceEEEEe-cCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh-H
Confidence 4455555454444433 4556666554321 1222223456799999999999999999999999999874322211 1
Q ss_pred ccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC-CeeEEEEecCCCcEEEEEEecCCCCEEE
Q 007411 525 KRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS-CKVFRTLKCHEGVCIGCEWHPLEQSKVA 592 (604)
Q Consensus 525 ~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t-~~~~~~l~~h~~~V~~v~~sp~~~~~l~ 592 (604)
...........|...+|+.. .-+|.....| +-+|-... .+.++..+.|.-.|.-..|.+ +...+.
T Consensus 104 ~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~-et~v~L 169 (657)
T KOG2377|consen 104 YTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCP-ETAVIL 169 (657)
T ss_pred HHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEcc-ccceEe
Confidence 11111222344677888776 4455544444 55565433 233455566777788888888 454433
No 459
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=88.45 E-value=17 Score=32.08 Aligned_cols=115 Identities=11% Similarity=0.083 Sum_probs=72.7
Q ss_pred eEEEccCCCEEEEEECCCcEEEEECCC--------CcEEEEeeCCCcceEEEEccCC--CCCcEEEEEEcCCeEEEEeCC
Q 007411 362 DISFCNDGTKFLTASYDKNIKYWDTET--------GQVIRTFSTGKIPYVVKLNPDD--DKQNILLAGMSDKKIVQWDMN 431 (604)
Q Consensus 362 ~l~fspdg~~L~s~s~Dg~I~vWD~~t--------~~~i~~~~~~~~~~~~~~~~~~--~~~~~lvsg~~dg~I~iwD~~ 431 (604)
.-.|......|++++.-|.|.|++... ...+..+.....+.+++.-+.. .....|+.|+ ...|..||+.
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~ 81 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE 81 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence 345655566788888889999998763 3456677777777777655542 3335566665 5679999998
Q ss_pred CCceEEEEcCcCCceeEEEEeC---CCCEEEEEeCCCcEEEEECCCCeEE
Q 007411 432 TKEITQEYDQHLGAVNTITFVD---SNRRFVTSSDDKSLRVWEFGIPVVI 478 (604)
Q Consensus 432 s~~~~~~~~~h~~~V~~i~~sp---~~~~l~sgs~Dg~I~iwdl~~~~~~ 478 (604)
...-+..- .-...|+++.+-. ...-++..+.+.+|.-||..-.+..
T Consensus 82 ~N~d~Fyk-e~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 82 NNSDLFYK-EVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIF 130 (136)
T ss_pred cCchhhhh-hCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEE
Confidence 76544332 3446778777642 1223444444677777776554443
No 460
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=88.05 E-value=38 Score=35.66 Aligned_cols=196 Identities=12% Similarity=0.182 Sum_probs=106.0
Q ss_pred EEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeC----CCCE--EEEEe-CC---CcEEEEEC
Q 007411 403 VVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVD----SNRR--FVTSS-DD---KSLRVWEF 472 (604)
Q Consensus 403 ~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp----~~~~--l~sgs-~D---g~I~iwdl 472 (604)
.+-++|......+++....++-+.+||+.- +.++.+. .+.++.+.+.. .++. |+.++ .+ .+|++|.+
T Consensus 58 AIWvnp~dp~kSlIigTdK~~GL~VYdL~G-k~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~i 134 (381)
T PF02333_consen 58 AIWVNPADPAKSLIIGTDKKGGLYVYDLDG-KELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRI 134 (381)
T ss_dssp EEE--SS-GGG-EEEEEETTTEEEEEETTS--EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEE
T ss_pred cEecCCCCcccceEEEEeCCCCEEEEcCCC-cEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEe
Confidence 455666666667888889999999999974 4556653 34555555432 2332 34443 22 46999987
Q ss_pred CC-CeEEEEeecC------CCCcccEEEEc--C-CCC-EEEEEEcCCeEEEEEcCC---ce-eecccccccCcccccceE
Q 007411 473 GI-PVVIKYISEP------HMHSMPSISLH--P-NTN-WLAAQSLDNQILIYSTRE---RF-QLNKKKRFAGHIVAGYAC 537 (604)
Q Consensus 473 ~~-~~~~~~~~~~------~~~~v~~l~~s--p-~g~-~l~s~s~Dg~I~iwd~~~---~~-~~~~~~~~~~~~~~~~v~ 537 (604)
.. ...+..+..+ ....+..+|+. | +|. ++++...+|.+..|.+.. +. .....+.|.. .+.+-
T Consensus 135 d~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~---~sQ~E 211 (381)
T PF02333_consen 135 DPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV---GSQPE 211 (381)
T ss_dssp ETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE----SS-EE
T ss_pred cCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC---CCcce
Confidence 53 2233333221 12235667763 3 344 566677889888887742 11 1112222322 23556
Q ss_pred EEEEcCCCCEEEEEcCCCcEEEEeCCC-----CeeEEEEec--CCCcEEEEEEec--CCCCEEE-EEeCCCcEEEeC
Q 007411 538 QVNFSPDGRFVMSGDGEGKCWFWDWKS-----CKVFRTLKC--HEGVCIGCEWHP--LEQSKVA-TCGWDGLIKYWD 604 (604)
Q Consensus 538 ~l~~spdg~~L~sgs~dG~I~iwd~~t-----~~~~~~l~~--h~~~V~~v~~sp--~~~~~l~-tgg~DG~I~vWD 604 (604)
.|.......+|+.|-.+--|+-|+... +..+....+ ....|-.+++-. ++..+|+ |.-.+++..|||
T Consensus 212 GCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~ 288 (381)
T PF02333_consen 212 GCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYD 288 (381)
T ss_dssp EEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEE
T ss_pred EEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEe
Confidence 677888888999999998888888752 233333222 234677777653 2334444 444466777774
No 461
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=88.04 E-value=1.4 Score=30.44 Aligned_cols=31 Identities=23% Similarity=0.192 Sum_probs=25.8
Q ss_pred CceeeEEEccCC---CEEEEEECCCcEEEEECCC
Q 007411 358 KAVRDISFCNDG---TKFLTASYDKNIKYWDTET 388 (604)
Q Consensus 358 ~~V~~l~fspdg---~~L~s~s~Dg~I~vWD~~t 388 (604)
++|+++.|+|.+ .+|+.+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999843 5788887789999999985
No 462
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=87.89 E-value=48 Score=36.58 Aligned_cols=251 Identities=13% Similarity=0.096 Sum_probs=115.8
Q ss_pred CCCCEEEEEECCCcEEEEecCCCCe-eeEEecCC-CCceeeEEEccCC-CEEEEEEC--CCcEEEEECCCCcEEEEeeCC
Q 007411 324 KYGHLILSAGMDTKVKIWDVVNSGK-CMRTYMGH-SKAVRDISFCNDG-TKFLTASY--DKNIKYWDTETGQVIRTFSTG 398 (604)
Q Consensus 324 ~~g~~L~sgs~Dg~I~IWd~~~~~~-~~~~~~~h-~~~V~~l~fspdg-~~L~s~s~--Dg~I~vWD~~t~~~i~~~~~~ 398 (604)
..+..++.+..+|.+..-.+...+. ......+. .....++++..+| .+|+.||. |+.+.-|....-+.+..+..-
T Consensus 220 ~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~N~ 299 (504)
T PF10433_consen 220 KDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLPNW 299 (504)
T ss_dssp TTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE---
T ss_pred CCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEeccCc
Confidence 3378899999999999888744332 22223333 5566777777655 36666766 455666665555667777776
Q ss_pred CcceEEEEccCC-CCCc------EEEEEE---cCCeEEEEeCCCCceEE----EEcCcCCceeEEEEeCC----CCEEEE
Q 007411 399 KIPYVVKLNPDD-DKQN------ILLAGM---SDKKIVQWDMNTKEITQ----EYDQHLGAVNTITFVDS----NRRFVT 460 (604)
Q Consensus 399 ~~~~~~~~~~~~-~~~~------~lvsg~---~dg~I~iwD~~s~~~~~----~~~~h~~~V~~i~~sp~----~~~l~s 460 (604)
.+..-+++.... .... .+++++ .+|.|++.. .|-... ......+ +..+-..+. +.+|+.
T Consensus 300 ~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr--~Gi~~~~~~~~~~~l~~-v~~iW~l~~~~~~~~~lv~ 376 (504)
T PF10433_consen 300 GPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR--NGIGIEGLELASSELPG-VTGIWTLKLSSSDHSYLVL 376 (504)
T ss_dssp -SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE--ESBEEE--EEEEEEEST-EEEEEEE-SSSSSBSEEEE
T ss_pred CCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe--ccCCceeeeeeccCCCC-ceEEEEeeecCCCceEEEE
Confidence 666666665332 1221 455544 467888773 222222 1111222 444333322 456666
Q ss_pred EeCCCcEEEEECC---CCeEEEEeec-CCCCcccEEEEcCC-CCEEEEEEcCCeEEEEEcCCceeecccccccCcccccc
Q 007411 461 SSDDKSLRVWEFG---IPVVIKYISE-PHMHSMPSISLHPN-TNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGY 535 (604)
Q Consensus 461 gs~Dg~I~iwdl~---~~~~~~~~~~-~~~~~v~~l~~sp~-g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 535 (604)
+..+. -+++.+. ....+..+.. +.......+....- +..++=. ....|++.+.............. ...
T Consensus 377 S~~~~-T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~~~~ivQV-t~~~i~l~~~~~~~~~~~w~~~~----~~~ 450 (504)
T PF10433_consen 377 SFPNE-TRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVGDGRIVQV-TPKGIRLIDLEDGKLTQEWKPPA----GSI 450 (504)
T ss_dssp EESSE-EEEEEES----SSEEEEE---TS-SSS-EEEEEEETTTEEEEE-ESSEEEEEESSSTSEEEEEE-TT----S--
T ss_pred EcCCc-eEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcCCCeEEEE-ecCeEEEEECCCCeEEEEEeCCC----CCe
Confidence 65544 4455553 2333322211 11111111111111 2222222 24457777765443332211111 223
Q ss_pred eEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEe-c----CCCcEEEEEEec
Q 007411 536 ACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK-C----HEGVCIGCEWHP 585 (604)
Q Consensus 536 v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~-~----h~~~V~~v~~sp 585 (604)
|...+. ++.+++.+..++.+..+.+.......... . ....|.++...|
T Consensus 451 I~~a~~--~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 451 IVAASI--NDPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp -SEEEE--SSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred EEEEEE--CCCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 333333 44577777778889999887776643333 1 356788887766
No 463
>PLN02193 nitrile-specifier protein
Probab=87.52 E-value=48 Score=36.22 Aligned_cols=147 Identities=10% Similarity=0.053 Sum_probs=73.6
Q ss_pred CCCEEEEEECC-----CcEEEEECCCCcEEEEeeCC---CcceEEEEccCCCCCcEEEEEEcC-----CeEEEEeCCCCc
Q 007411 368 DGTKFLTASYD-----KNIKYWDTETGQVIRTFSTG---KIPYVVKLNPDDDKQNILLAGMSD-----KKIVQWDMNTKE 434 (604)
Q Consensus 368 dg~~L~s~s~D-----g~I~vWD~~t~~~i~~~~~~---~~~~~~~~~~~~~~~~~lvsg~~d-----g~I~iwD~~s~~ 434 (604)
++.+++.|+.+ ..+.++|+.+.+........ ........... +..+++.|+.+ ..+..||+.+.+
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~--~~~iYv~GG~~~~~~~~~~~~yd~~t~~ 305 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAAD--EENVYVFGGVSATARLKTLDSYNIVDKK 305 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEE--CCEEEEECCCCCCCCcceEEEEECCCCE
Confidence 55666777765 35788898876554322211 11111111111 23567777654 346788887765
Q ss_pred eEEEEc---CcC-CceeEEEEeCCCCEEEEEeCC----CcEEEEECCCCeEEEEeec---CCCCcccEEEEcCCCCEEEE
Q 007411 435 ITQEYD---QHL-GAVNTITFVDSNRRFVTSSDD----KSLRVWEFGIPVVIKYISE---PHMHSMPSISLHPNTNWLAA 503 (604)
Q Consensus 435 ~~~~~~---~h~-~~V~~i~~sp~~~~l~sgs~D----g~I~iwdl~~~~~~~~~~~---~~~~~v~~l~~sp~g~~l~s 503 (604)
-...-. ... ..-.+++.. +++.++.++.+ ..|.+||+.+..-...... +......+++ .-++++++.
T Consensus 306 W~~~~~~~~~~~~R~~~~~~~~-~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~-~~~~~iyv~ 383 (470)
T PLN02193 306 WFHCSTPGDSFSIRGGAGLEVV-QGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASA-AVGKHIVIF 383 (470)
T ss_pred EEeCCCCCCCCCCCCCcEEEEE-CCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEE-EECCEEEEE
Confidence 332110 000 001122222 56677777655 4588999887654332211 1111112222 235667777
Q ss_pred EEcC--------------CeEEEEEcCCc
Q 007411 504 QSLD--------------NQILIYSTRER 518 (604)
Q Consensus 504 ~s~D--------------g~I~iwd~~~~ 518 (604)
|+.. +.+.+||+.+.
T Consensus 384 GG~~~~~~~~~~~~~~~~ndv~~~D~~t~ 412 (470)
T PLN02193 384 GGEIAMDPLAHVGPGQLTDGTFALDTETL 412 (470)
T ss_pred CCccCCccccccCccceeccEEEEEcCcC
Confidence 7643 24778887654
No 464
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=87.27 E-value=43 Score=35.36 Aligned_cols=51 Identities=8% Similarity=0.171 Sum_probs=25.2
Q ss_pred cEEEEEEcC-----------CeEEEEeCCCCceEEEEcCcCCce--eEEEEeCCCCEEEEEeCC
Q 007411 414 NILLAGMSD-----------KKIVQWDMNTKEITQEYDQHLGAV--NTITFVDSNRRFVTSSDD 464 (604)
Q Consensus 414 ~~lvsg~~d-----------g~I~iwD~~s~~~~~~~~~h~~~V--~~i~~sp~~~~l~sgs~D 464 (604)
.+++.|+.. ..+..||+.+.+-...-....... .+....-++.+++.|+.+
T Consensus 86 ~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 86 KLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred EEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 566666643 247788887764333211111111 112221467777777754
No 465
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=86.42 E-value=31 Score=32.92 Aligned_cols=171 Identities=14% Similarity=0.174 Sum_probs=92.6
Q ss_pred CCEEEEEEC--CCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEE-EEECCCcEEEEECCCCcEEEEeeCCCcce
Q 007411 326 GHLILSAGM--DTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFL-TASYDKNIKYWDTETGQVIRTFSTGKIPY 402 (604)
Q Consensus 326 g~~L~sgs~--Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~-s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~ 402 (604)
++++.+.+. ...|++||+ ..++.+..-.-....+..=-...-|..+. -.-.+|.-.++|..+-+++..+.-....+
T Consensus 56 g~i~esTG~yg~S~ir~~~L-~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGW 134 (262)
T COG3823 56 GHILESTGLYGFSKIRVSDL-TTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGW 134 (262)
T ss_pred CEEEEeccccccceeEEEec-cCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcce
Confidence 678877765 346999999 56665544322111111111111123332 22346888889999999888887666665
Q ss_pred EEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEE----cC-cCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeE
Q 007411 403 VVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY----DQ-HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVV 477 (604)
Q Consensus 403 ~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~----~~-h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~ 477 (604)
.++..- .-++.+.....++.-|..+-....++ .+ .-..++-+.|. +|...+-.-.+..|...+..+++.
T Consensus 135 gLt~d~-----~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV 208 (262)
T COG3823 135 GLTSDD-----KNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRV 208 (262)
T ss_pred eeecCC-----cceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcE
Confidence 554322 22666666677777777654332222 21 11233444554 344444444444455555555555
Q ss_pred EEEee-----------cCCCCcccEEEEcCCCCEEEE
Q 007411 478 IKYIS-----------EPHMHSMPSISLHPNTNWLAA 503 (604)
Q Consensus 478 ~~~~~-----------~~~~~~v~~l~~sp~g~~l~s 503 (604)
...+. ..+..-.+.|++.|++..|..
T Consensus 209 ~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~i 245 (262)
T COG3823 209 VAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLI 245 (262)
T ss_pred EEEEEccCCchhcCccccccccccceeecCcCCeEEE
Confidence 54442 123445778888888744444
No 466
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=86.20 E-value=21 Score=38.57 Aligned_cols=115 Identities=15% Similarity=0.176 Sum_probs=63.3
Q ss_pred EcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeE--EEEee----cCCCCcccEEEEcCCC------CEEEEEE-
Q 007411 439 YDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVV--IKYIS----EPHMHSMPSISLHPNT------NWLAAQS- 505 (604)
Q Consensus 439 ~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~--~~~~~----~~~~~~v~~l~~sp~g------~~l~s~s- 505 (604)
+.........|+|.|++++|++--..|.|++++-..... +..+. .........|+++|+- .+|.+..
T Consensus 25 va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt 104 (454)
T TIGR03606 25 LLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYT 104 (454)
T ss_pred EECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEe
Confidence 334456678999999998777766579999998654432 21111 1135668899999874 3444432
Q ss_pred ---------cCCeEEEEEcCCc-eeec-ccccccCc--ccccceEEEEEcCCCCEEEEEcC
Q 007411 506 ---------LDNQILIYSTRER-FQLN-KKKRFAGH--IVAGYACQVNFSPDGRFVMSGDG 553 (604)
Q Consensus 506 ---------~Dg~I~iwd~~~~-~~~~-~~~~~~~~--~~~~~v~~l~~spdg~~L~sgs~ 553 (604)
....|.-|.+... ..+. ....+.+. .....-..|.|.|||.+.++.+.
T Consensus 105 ~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD 165 (454)
T TIGR03606 105 YKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGE 165 (454)
T ss_pred ccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECC
Confidence 1234555554321 0010 01111110 00122446889999987665443
No 467
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=86.01 E-value=4.3 Score=39.44 Aligned_cols=63 Identities=13% Similarity=0.256 Sum_probs=47.3
Q ss_pred EEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEE-------e-------cCCCcEEEEEEecCCCCEEEEEeCCCcEEEeC
Q 007411 540 NFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTL-------K-------CHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 540 ~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l-------~-------~h~~~V~~v~~sp~~~~~l~tgg~DG~I~vWD 604 (604)
.+..++.+|++-+.+|.+++||+.+++.+..- . .....|..+.++. ++.-|++-+ +|....||
T Consensus 17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~-~G~PiV~ls-ng~~y~y~ 93 (219)
T PF07569_consen 17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTS-NGVPIVTLS-NGDSYSYS 93 (219)
T ss_pred EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcC-CCCEEEEEe-CCCEEEec
Confidence 35567899999999999999999998764332 1 2445788888886 666677665 57888875
No 468
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=85.76 E-value=5.2 Score=42.11 Aligned_cols=169 Identities=11% Similarity=0.098 Sum_probs=100.4
Q ss_pred CeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEE-eeCCCcceE---EE-EccCCCCCcEEEEEEc
Q 007411 347 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRT-FSTGKIPYV---VK-LNPDDDKQNILLAGMS 421 (604)
Q Consensus 347 ~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~-~~~~~~~~~---~~-~~~~~~~~~~lvsg~~ 421 (604)
++.++.+......|..+-..|||+.|..-+. ..+.|+++.+...... +-......+ +. -..--.++.-++++..
T Consensus 210 ~e~i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~ 288 (733)
T COG4590 210 QEIIRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHE 288 (733)
T ss_pred hhhhhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcC
Confidence 3445556666778889999999998887665 6888888875433211 111111100 00 0000113356888999
Q ss_pred CCeEEEE-eCCCCc-----eEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEc
Q 007411 422 DKKIVQW-DMNTKE-----ITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLH 495 (604)
Q Consensus 422 dg~I~iw-D~~s~~-----~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~s 495 (604)
||.|..| |.+.+. .++.++-...++..+.-..+.+-|++-+..|++.++.......+... ..-..+..++++
T Consensus 289 dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~--~~~~~~~~~~~S 366 (733)
T COG4590 289 DGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFE--RAYQAPQLVAMS 366 (733)
T ss_pred CCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehh--hhhcCcceeeeC
Confidence 9999998 554332 12222222233433333334456888888899888765444333222 233367788999
Q ss_pred CCCCEEEEEEcCCeEEEEEcCCce
Q 007411 496 PNTNWLAAQSLDNQILIYSTRERF 519 (604)
Q Consensus 496 p~g~~l~s~s~Dg~I~iwd~~~~~ 519 (604)
|++.++++-. .|.|+++.+.+..
T Consensus 367 p~~~~Ll~e~-~gki~~~~l~Nr~ 389 (733)
T COG4590 367 PNQAYLLSED-QGKIRLAQLENRN 389 (733)
T ss_pred cccchheeec-CCceEEEEecCCC
Confidence 9999988743 5779999887654
No 469
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=85.65 E-value=37 Score=33.04 Aligned_cols=136 Identities=12% Similarity=0.121 Sum_probs=82.2
Q ss_pred CCceeeEEEccCCCEEEEEECC---------CcEEEEECCCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEE
Q 007411 357 SKAVRDISFCNDGTKFLTASYD---------KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQ 427 (604)
Q Consensus 357 ~~~V~~l~fspdg~~L~s~s~D---------g~I~vWD~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~i 427 (604)
....++-..+|+|++++-.-.| |.++.|-.. ++....+..-.....+.|. .+...+.++-+.+-.|.-
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~-h~v~~i~~~v~IsNgl~Wd--~d~K~fY~iDsln~~V~a 184 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG-HQVELIWNCVGISNGLAWD--SDAKKFYYIDSLNYEVDA 184 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccC-CCceeeehhccCCcccccc--ccCcEEEEEccCceEEee
Confidence 3456667788999985433222 334444322 2222222222222333443 444466677777888877
Q ss_pred Ee--CCCCce-----EEEEcC----cCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcC
Q 007411 428 WD--MNTKEI-----TQEYDQ----HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHP 496 (604)
Q Consensus 428 wD--~~s~~~-----~~~~~~----h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp 496 (604)
|| ..+|.+ +..++. ..-..-.+++..+|++++++-..++|...|..+++.+..+..+ ...++++||--
T Consensus 185 ~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP-t~qitsccFgG 263 (310)
T KOG4499|consen 185 YDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP-TPQITSCCFGG 263 (310)
T ss_pred eecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC-CCceEEEEecC
Confidence 77 555532 222221 1111234555668899999999999999999999999998875 66789988853
No 470
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=85.61 E-value=9.5 Score=42.98 Aligned_cols=279 Identities=11% Similarity=0.123 Sum_probs=0.0
Q ss_pred EEEcCCCCCEEEEEECC----CcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCc-----EEEEE---C
Q 007411 319 IRFFPKYGHLILSAGMD----TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKN-----IKYWD---T 386 (604)
Q Consensus 319 l~fsp~~g~~L~sgs~D----g~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~-----I~vWD---~ 386 (604)
|.|--+ ..+.+.+... ..+++|.- .|..-..-....+.-..++|-|+|..+++-+.||. |+.+. +
T Consensus 207 i~wrgD-~~y~~v~r~Ee~prra~rvysr--eg~lds~sep~~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGL 283 (1243)
T COG5290 207 IFWRGD-TEYNLVGRSEERPRRAFRVYSR--EGQLDSASEPVTGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGL 283 (1243)
T ss_pred EEEccC-cceeeecchhcccccceeeecc--ccccccccCCcccchhccccccCCceeeeeccCCCCCcceEEEEccCCc
Q ss_pred CCCcEEEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcCCceeEEEEeC--CCCEEEEEe--
Q 007411 387 ETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVD--SNRRFVTSS-- 462 (604)
Q Consensus 387 ~t~~~i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp--~~~~l~sgs-- 462 (604)
+-|..-............+|+.... +.+....+.|.+|-..+-..-......-..+.-+.|+| .+..+++++
T Consensus 284 rHGef~lr~~~dEk~~~~~wn~~s~----vlav~~~n~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe~~nTl~f~d~~~ 359 (1243)
T COG5290 284 RHGEFDLRVGCDEKAFLENWNLLST----VLAVAEGNLLKLWTTKNYHWYLKVERQIPGISYVKWHPEEKNTLLFRDGER 359 (1243)
T ss_pred ccCCccccCCchhhhhhhhhhHHHH----HHHHhhcceEEEEEccceEEEEEEeecCCCcceeeeccccCcEEEEecCCe
Q ss_pred -------------------CCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEE----------cCCeEEEE
Q 007411 463 -------------------DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS----------LDNQILIY 513 (604)
Q Consensus 463 -------------------~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s----------~Dg~I~iw 513 (604)
+.|++.+.|-...............++....+.-+++.+-+.. .+..+..+
T Consensus 360 I~~V~f~~k~~~~~s~~p~d~g~~~ViDGs~~l~Tplsl~n~PPPm~~~~~~~d~NV~dv~~s~~~~~~aa~~~drli~f 439 (1243)
T COG5290 360 ILRVFFSEKKTHHGSEYPFDNGTSYVIDGSYMLYTPLSLKNLPPPMFSVRVGFDTNVVDVFPSFAEKKGAALLRDRLIMF 439 (1243)
T ss_pred EEEEEeehhhhcCCcccCccCCceEEEcCceEEecchhhhcCCCCeEEEEecCCCceeeeccchhhhhHhhhccceeEEE
Q ss_pred EcCCceeecccccccCcccccceE--EEEEcCCCCEEEEEcCCC--cEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCC
Q 007411 514 STRERFQLNKKKRFAGHIVAGYAC--QVNFSPDGRFVMSGDGEG--KCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQS 589 (604)
Q Consensus 514 d~~~~~~~~~~~~~~~~~~~~~v~--~l~~spdg~~L~sgs~dG--~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~ 589 (604)
...+...+.....+........+. ++.+-.+|..++..+.++ .+.+.+...-..-..+..-...=.++.-+.....
T Consensus 440 ~~~s~e~i~k~~ef~~sef~s~v~f~~~l~l~~~~v~ll~dtnn~s~~~i~~~~d~~e~~k~~~ve~~~~~~l~~~~c~~ 519 (1243)
T COG5290 440 RWDSEEFINKRTEFLESEFDSIVLFDGFLVLKSGHVFLLKDTNNESDTYITRNGDVDERKKRGTVETRRTSTLVHQLCQT 519 (1243)
T ss_pred ecCcHHHHHHhccccHHhhhhhccccceEEecCceEEEEeccCCCcceEEeecCcccchhhccceeeeeeehhhHHHHHH
Q ss_pred EEEEEeCCCcEEEeC
Q 007411 590 KVATCGWDGLIKYWD 604 (604)
Q Consensus 590 ~l~tgg~DG~I~vWD 604 (604)
++.-+..+|.|+-||
T Consensus 520 ~l~y~t~~G~v~~yn 534 (1243)
T COG5290 520 LLRYGTCVGVVKHYN 534 (1243)
T ss_pred HHhhcccceeEEEec
No 471
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=85.55 E-value=61 Score=35.50 Aligned_cols=151 Identities=16% Similarity=0.111 Sum_probs=74.4
Q ss_pred cCCeEEEEeCCCCceEEEEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCC--CcccEEEEcCCC
Q 007411 421 SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHM--HSMPSISLHPNT 498 (604)
Q Consensus 421 ~dg~I~iwD~~s~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~--~~v~~l~~sp~g 498 (604)
..+.+.++|.. |.+...+.........+...++|.+++..+ ..++.+|+- ++.+.....+.. ..=..+...|+|
T Consensus 126 ~~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nG 201 (477)
T PF05935_consen 126 SSSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNG 201 (477)
T ss_dssp BEEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS
T ss_pred CCceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCC
Confidence 45667777754 445555543333332367778887776555 778888885 444433332221 113456778899
Q ss_pred CEEEEEEc-------------CCeEE----------EEEcCCceeeccc-----------ccccCcccccceEEEEEcC-
Q 007411 499 NWLAAQSL-------------DNQIL----------IYSTRERFQLNKK-----------KRFAGHIVAGYACQVNFSP- 543 (604)
Q Consensus 499 ~~l~s~s~-------------Dg~I~----------iwd~~~~~~~~~~-----------~~~~~~~~~~~v~~l~~sp- 543 (604)
++|+.+.. ...|. .|++..-...... ........-..+.++.+.+
T Consensus 202 n~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~ 281 (477)
T PF05935_consen 202 NLLILASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPS 281 (477)
T ss_dssp -EEEEEEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETT
T ss_pred CEEEEEeecccccCCCCccEecCEEEEECCCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCC
Confidence 98888772 12233 3443322111110 0000011113467899988
Q ss_pred CCCEEEEEcCCCcEEEEeCCCCeeEEEEecCC
Q 007411 544 DGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHE 575 (604)
Q Consensus 544 dg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~ 575 (604)
++.+|+++-....|...|..+++....+-.|.
T Consensus 282 dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~ 313 (477)
T PF05935_consen 282 DDSIIVSSRHQSAVIKIDYRTGKIKWILGPPG 313 (477)
T ss_dssp TTEEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred CCeEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence 66677777667799999999999988887654
No 472
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=85.46 E-value=46 Score=33.99 Aligned_cols=234 Identities=11% Similarity=0.026 Sum_probs=113.4
Q ss_pred CEEEEEECCCcEEEEecCCC-CeeeEEecCCCCceeeEEEccCCCEEEEEE-CCCcEEEEECCCCcE-------------
Q 007411 327 HLILSAGMDTKVKIWDVVNS-GKCMRTYMGHSKAVRDISFCNDGTKFLTAS-YDKNIKYWDTETGQV------------- 391 (604)
Q Consensus 327 ~~L~sgs~Dg~I~IWd~~~~-~~~~~~~~~h~~~V~~l~fspdg~~L~s~s-~Dg~I~vWD~~t~~~------------- 391 (604)
.+|+.|..+|...+. +... ....+.+ +...|+++...+.-+.|++-+ ....|+++++..-..
T Consensus 14 ~~lL~GTe~Gly~~~-~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~ 90 (302)
T smart00036 14 KWLLVGTEEGLYVLN-ISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIR 90 (302)
T ss_pred cEEEEEeCCceEEEE-cccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccccc
Confidence 589999999866554 5222 3333333 567899999998777666555 334599999843221
Q ss_pred -EEEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCC----ceEEEE---c-CcCCceeEEEEeCC--CCEEEE
Q 007411 392 -IRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK----EITQEY---D-QHLGAVNTITFVDS--NRRFVT 460 (604)
Q Consensus 392 -i~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~----~~~~~~---~-~h~~~V~~i~~sp~--~~~l~s 460 (604)
.......+...+..+.........++++....+|.++..... .....+ . .-..++..+..+++ ...++.
T Consensus 91 ~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcv 170 (302)
T smart00036 91 KNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICI 170 (302)
T ss_pred ccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEE
Confidence 001122222223333322222345556666677777644322 111110 0 01123333333333 456777
Q ss_pred EeCCCcEEEEECCCC--eEEE----EeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcCC-ceeecccccccCcccc
Q 007411 461 SSDDKSLRVWEFGIP--VVIK----YISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE-RFQLNKKKRFAGHIVA 533 (604)
Q Consensus 461 gs~Dg~I~iwdl~~~--~~~~----~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~-~~~~~~~~~~~~~~~~ 533 (604)
|+..+-..++++... .... ...........++..-+++.+|++ - |....+.|... .......-.+ .
T Consensus 171 G~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l~~~e~Llc-~-~~~~v~Vn~~G~~~~r~~~l~w-----~ 243 (302)
T smart00036 171 GSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQVPRDEFLLC-Y-DEFGVFVNLYGKRRSRNPILHW-----E 243 (302)
T ss_pred EEcCCCCeEEEEeecccccccccccccccccccCceEEEEECCCeEEEE-E-CcEEEEEeCCCCccccceEEEc-----C
Confidence 766433445555321 0000 000001102233333334444433 3 34444555543 1111111111 2
Q ss_pred cceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEec
Q 007411 534 GYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC 573 (604)
Q Consensus 534 ~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~ 573 (604)
....++++. ..||++-..+ .|.++++.+++.++++..
T Consensus 244 ~~p~~~~~~--~pyll~~~~~-~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 244 FMPESFAYH--SPYLLAFHDN-GIEIRSIKTGELLQELAD 280 (302)
T ss_pred CcccEEEEE--CCEEEEEcCC-cEEEEECCCCceEEEEec
Confidence 233456665 3577766544 599999999999888874
No 473
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=85.46 E-value=4.5 Score=39.25 Aligned_cols=72 Identities=8% Similarity=0.119 Sum_probs=50.4
Q ss_pred EEcCCCCEEEEEEcCCeEEEEEcCCceeeccccc----ccC-----cccccceEEEEEcCCCCEEEEEcCCCcEEEEeCC
Q 007411 493 SLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKR----FAG-----HIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 563 (604)
Q Consensus 493 ~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~----~~~-----~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~ 563 (604)
.+..++.+|++.+.+|.+++||+.+...+..... +.. ......|..+.++.+|.-|++- .+|..+.|+..
T Consensus 17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng~~y~y~~~ 95 (219)
T PF07569_consen 17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNGDSYSYSPD 95 (219)
T ss_pred EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCCCEEEeccc
Confidence 3555789999999999999999988765433311 110 0234567788888888877665 46889999865
Q ss_pred CC
Q 007411 564 SC 565 (604)
Q Consensus 564 t~ 565 (604)
-+
T Consensus 96 L~ 97 (219)
T PF07569_consen 96 LG 97 (219)
T ss_pred cc
Confidence 43
No 474
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=85.38 E-value=0.18 Score=53.16 Aligned_cols=148 Identities=10% Similarity=0.119 Sum_probs=100.1
Q ss_pred CCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEE-EEEcCCeEEEEEcCCceee
Q 007411 443 LGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLA-AQSLDNQILIYSTRERFQL 521 (604)
Q Consensus 443 ~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~-s~s~Dg~I~iwd~~~~~~~ 521 (604)
....-...|-+.+..++.++.+..+..||-... .+..+ ........++|.-++..++ .+-..+.+.+||+.+....
T Consensus 34 lv~pi~~~w~~e~~nlavaca~tiv~~YD~agq-~~le~--n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq 110 (615)
T KOG2247|consen 34 LVGPIIHRWRPEGHNLAVACANTIVIYYDKAGQ-VILEL--NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ 110 (615)
T ss_pred ccccceeeEecCCCceehhhhhhHHHhhhhhcc-eeccc--CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH
Confidence 333445567777777888888888999985433 22222 2344566778887776544 4556788999999764322
Q ss_pred cccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCcEEEEEEecCCCCEEEEEeCCCcE
Q 007411 522 NKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLI 600 (604)
Q Consensus 522 ~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~tgg~DG~I 600 (604)
.. .+.+..... -+.|++.+..++.|...|.+.|++..+.+.+...-.|...+++++|.+ + .+++.|+.|..+
T Consensus 111 qL--E~gg~~s~s---ll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~l-E-d~vil~dcd~~L 182 (615)
T KOG2247|consen 111 QL--ESGGTSSKS---LLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTL-E-DYVILCDCDNTL 182 (615)
T ss_pred HH--hccCcchHH---HHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecc-c-ceeeecCcHHHH
Confidence 11 112211111 178999999999999999999999888777766655888999999998 4 367777766543
No 475
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=85.34 E-value=45 Score=33.80 Aligned_cols=160 Identities=16% Similarity=0.284 Sum_probs=87.4
Q ss_pred CeEEEEeCCCCceEEEEcC------cCCceeEEEEeCCC-----CE-EEEEeCCCcEEEEECCCCeEEEEeecC------
Q 007411 423 KKIVQWDMNTKEITQEYDQ------HLGAVNTITFVDSN-----RR-FVTSSDDKSLRVWEFGIPVVIKYISEP------ 484 (604)
Q Consensus 423 g~I~iwD~~s~~~~~~~~~------h~~~V~~i~~sp~~-----~~-l~sgs~Dg~I~iwdl~~~~~~~~~~~~------ 484 (604)
-+|.+||+.++++++++.- ..+.++.+.+.... .+ +++=+..+-|.|+|+.+++..+.....
T Consensus 34 pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~ 113 (287)
T PF03022_consen 34 PKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPD 113 (287)
T ss_dssp -EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-S
T ss_pred cEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceecc
Confidence 3788899999998887743 24567788887632 23 344445568999999988776554320
Q ss_pred ------------CCCcccEEEEcC---CCCEEEEEEcCCeEEEEEcCCce-----eecc------cccccCcccccceEE
Q 007411 485 ------------HMHSMPSISLHP---NTNWLAAQSLDNQILIYSTRERF-----QLNK------KKRFAGHIVAGYACQ 538 (604)
Q Consensus 485 ------------~~~~v~~l~~sp---~g~~l~s~s~Dg~I~iwd~~~~~-----~~~~------~~~~~~~~~~~~v~~ 538 (604)
....+..++.+| ++++|.-+...+. .+|.+.+.. .... ...+ +.. .+....
T Consensus 114 ~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k-~~~s~g 190 (287)
T PF03022_consen 114 AGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDL-GDK-GSQSDG 190 (287)
T ss_dssp SEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEE-EE----SECE
T ss_pred ccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceec-ccc-CCCCce
Confidence 011244555544 5556665554432 233332211 0000 0111 110 123446
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEeCCCC---eeEEEE-ecCC--CcEEEEEEec
Q 007411 539 VNFSPDGRFVMSGDGEGKCWFWDWKSC---KVFRTL-KCHE--GVCIGCEWHP 585 (604)
Q Consensus 539 l~~spdg~~L~sgs~dG~I~iwd~~t~---~~~~~l-~~h~--~~V~~v~~sp 585 (604)
++++++|.+.++--..+.|..|+..+. +.+..+ +... ..+.++.+.+
T Consensus 191 ~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~ 243 (287)
T PF03022_consen 191 MAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDP 243 (287)
T ss_dssp EEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T
T ss_pred EEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeecc
Confidence 888999998888889999999998751 112222 2222 3567777776
No 476
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=85.32 E-value=57 Score=38.40 Aligned_cols=108 Identities=17% Similarity=0.176 Sum_probs=65.6
Q ss_pred CEEEEEECCCcEEEEecCCCCeeeEEe--cCCCCceeeEEEccCC------CEEEEEECCCcEEEEECCCCcEEEEeeCC
Q 007411 327 HLILSAGMDTKVKIWDVVNSGKCMRTY--MGHSKAVRDISFCNDG------TKFLTASYDKNIKYWDTETGQVIRTFSTG 398 (604)
Q Consensus 327 ~~L~sgs~Dg~I~IWd~~~~~~~~~~~--~~h~~~V~~l~fspdg------~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~ 398 (604)
..++.+-.+|.+.-+....++++.... ..-...|.|+++.+++ ++++.++.|+.+++..+....++..+...
T Consensus 550 ~qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q 629 (1205)
T KOG1898|consen 550 RQIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQ 629 (1205)
T ss_pred eEEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEcccc
Confidence 345555556666555553344443332 2235678899988754 57999999999999999877777776542
Q ss_pred ---CcceEEEEccCCCC------CcEEEEEEcCCeEEEE--eCCCCc
Q 007411 399 ---KIPYVVKLNPDDDK------QNILLAGMSDKKIVQW--DMNTKE 434 (604)
Q Consensus 399 ---~~~~~~~~~~~~~~------~~~lvsg~~dg~I~iw--D~~s~~ 434 (604)
..+..+++...... +-++.+|-.+|.+.-+ |.-+|.
T Consensus 630 ~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~NGvllR~~id~v~G~ 676 (1205)
T KOG1898|consen 630 GLSSPPESLCIVEMEATGGTDVAQLYLLIGLRNGVLLRFVIDTVTGQ 676 (1205)
T ss_pred ccCCCccceEEEEecccCCccceeEEEEecccccEEEEEEecccccc
Confidence 23333333332221 3467778778776554 444453
No 477
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=84.63 E-value=39 Score=32.45 Aligned_cols=102 Identities=17% Similarity=0.323 Sum_probs=61.8
Q ss_pred CEEEEEECCCcEEEEecCC-CCeeeEEecCCCCceeeEEEccCCCEEEEEECC---C---cEEEE-ECCC----CcEEE-
Q 007411 327 HLILSAGMDTKVKIWDVVN-SGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD---K---NIKYW-DTET----GQVIR- 393 (604)
Q Consensus 327 ~~L~sgs~Dg~I~IWd~~~-~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~D---g---~I~vW-D~~t----~~~i~- 393 (604)
+.|+.+...+.|.+|++.. ....+.++. .-+.|..+.++..|++|+|-=.+ . .+|+| +++. .+.++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 4555556678899999952 334555554 44789999999999999987432 2 56665 2221 11221
Q ss_pred ----------------------EeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCC
Q 007411 394 ----------------------TFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK 433 (604)
Q Consensus 394 ----------------------~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~ 433 (604)
.+.....+.+++.++... + |++|+ ++++.+|.+...
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG--~-LlVg~-~~~l~lf~l~~~ 165 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTG--N-LLVGC-GNKLVLFTLKYQ 165 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCC--C-EEEEc-CCEEEEEEEEEE
Confidence 122334556667666543 3 44444 567888877543
No 478
>PRK13684 Ycf48-like protein; Provisional
Probab=84.13 E-value=56 Score=33.89 Aligned_cols=141 Identities=8% Similarity=-0.063 Sum_probs=73.0
Q ss_pred EEEEEEcCCeEEEEeCCCCceEEEE-cCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecC---CCCccc
Q 007411 415 ILLAGMSDKKIVQWDMNTKEITQEY-DQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEP---HMHSMP 490 (604)
Q Consensus 415 ~lvsg~~dg~I~iwD~~s~~~~~~~-~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~~v~ 490 (604)
.+++.+..|.+..-.-..++..... ..-...++++.+.++++.++++ ..|.+++=....+........+ ....+.
T Consensus 185 ~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~ 263 (334)
T PRK13684 185 KYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYL 263 (334)
T ss_pred eEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCcccccccee
Confidence 3555555665554211222222222 2334678899999988876665 4576653223333333322222 224577
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEe
Q 007411 491 SISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 561 (604)
Q Consensus 491 ~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd 561 (604)
.+.+.+++..+++ +.+|.|. .....+............ ......+.|..+++.+++ +..|.|.-|+
T Consensus 264 ~v~~~~~~~~~~~-G~~G~v~-~S~d~G~tW~~~~~~~~~--~~~~~~~~~~~~~~~~~~-G~~G~il~~~ 329 (334)
T PRK13684 264 DLAYRTPGEIWAG-GGNGTLL-VSKDGGKTWEKDPVGEEV--PSNFYKIVFLDPEKGFVL-GQRGVLLRYV 329 (334)
T ss_pred eEEEcCCCCEEEE-cCCCeEE-EeCCCCCCCeECCcCCCC--CcceEEEEEeCCCceEEE-CCCceEEEec
Confidence 8889987775554 5567554 334433332222111111 224556777766666554 4678887765
No 479
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.13 E-value=20 Score=38.00 Aligned_cols=139 Identities=11% Similarity=0.057 Sum_probs=80.2
Q ss_pred CCCcEEEEecCC--CCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeC---CCcceEEEEcc
Q 007411 334 MDTKVKIWDVVN--SGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST---GKIPYVVKLNP 408 (604)
Q Consensus 334 ~Dg~I~IWd~~~--~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~---~~~~~~~~~~~ 408 (604)
..|.+.=|-+.. ..-++..-....++|.++.||+|.+.|++--.+.+|.+++....+....... .+...+..|.+
T Consensus 41 rSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W 120 (657)
T KOG2377|consen 41 RSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCW 120 (657)
T ss_pred ecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEE
Confidence 345555665522 2233333345567999999999999999999999999998844333222211 12223455555
Q ss_pred CCCCCcEEEEEEcCCeEEEEeCCC-CceEEEEcCcCCceeEEEEeCCCCEEEEEe--CCCcEEEEECCCC
Q 007411 409 DDDKQNILLAGMSDKKIVQWDMNT-KEITQEYDQHLGAVNTITFVDSNRRFVTSS--DDKSLRVWEFGIP 475 (604)
Q Consensus 409 ~~~~~~~lvsg~~dg~I~iwD~~s-~~~~~~~~~h~~~V~~i~~sp~~~~l~sgs--~Dg~I~iwdl~~~ 475 (604)
.+. .-++.....| +-+|-+.. ...++..+.|.-.|+-..|.++.+.++.++ ..+++.=+-++++
T Consensus 121 ~~s--~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 121 TSS--TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred ecC--eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 443 2344433333 44443322 233445567888899999999887654443 3444444444443
No 480
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=83.89 E-value=61 Score=34.15 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=16.7
Q ss_pred CCCEEEEEECCC-----------cEEEEECCCCcEEE
Q 007411 368 DGTKFLTASYDK-----------NIKYWDTETGQVIR 393 (604)
Q Consensus 368 dg~~L~s~s~Dg-----------~I~vWD~~t~~~i~ 393 (604)
++.+++.|+... .+..||..+.+...
T Consensus 84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~ 120 (376)
T PRK14131 84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQK 120 (376)
T ss_pred CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEe
Confidence 566777777542 46678887765443
No 481
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=83.65 E-value=5.8 Score=26.68 Aligned_cols=40 Identities=33% Similarity=0.493 Sum_probs=30.2
Q ss_pred cCCCEEEEEE-CCCcEEEEECCCCcEEEEeeCCCcceEEEE
Q 007411 367 NDGTKFLTAS-YDKNIKYWDTETGQVIRTFSTGKIPYVVKL 406 (604)
Q Consensus 367 pdg~~L~s~s-~Dg~I~vWD~~t~~~i~~~~~~~~~~~~~~ 406 (604)
|++++|+++. .++.|.++|..+++.+..+..+..+..+.+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 4666666554 578999999999999998887766655544
No 482
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=83.35 E-value=76 Score=34.79 Aligned_cols=138 Identities=18% Similarity=0.203 Sum_probs=68.3
Q ss_pred CcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcc----eEEEEccCCC
Q 007411 336 TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP----YVVKLNPDDD 411 (604)
Q Consensus 336 g~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~----~~~~~~~~~~ 411 (604)
+.+.+.|. .|.....+.........+.+.++|.+++..+ ..+..+|+. |+.+..+...... .-+...++
T Consensus 128 ~~~~~iD~--~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~n-- 200 (477)
T PF05935_consen 128 SYTYLIDN--NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPN-- 200 (477)
T ss_dssp EEEEEEET--TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TT--
T ss_pred ceEEEECC--CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCC--
Confidence 34444443 4444444332222222266778888776555 789999985 6676666554422 23333333
Q ss_pred CCcEEEEEEc-------------CCeEEEEeCCCCceEEEEcC--cC-------------------------CceeEEEE
Q 007411 412 KQNILLAGMS-------------DKKIVQWDMNTKEITQEYDQ--HL-------------------------GAVNTITF 451 (604)
Q Consensus 412 ~~~~lvsg~~-------------dg~I~iwD~~s~~~~~~~~~--h~-------------------------~~V~~i~~ 451 (604)
+++|+.+.. .-.|..+| .+|+.+..+.. |. --++++.+
T Consensus 201 -Gn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~y 278 (477)
T PF05935_consen 201 -GNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDY 278 (477)
T ss_dssp -S-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEE
T ss_pred -CCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEE
Confidence 366666651 23467777 78887776531 11 12788999
Q ss_pred eCCCCE-EEEEeCCCcEEEEECCCCeEEEEee
Q 007411 452 VDSNRR-FVTSSDDKSLRVWEFGIPVVIKYIS 482 (604)
Q Consensus 452 sp~~~~-l~sgs~Dg~I~iwdl~~~~~~~~~~ 482 (604)
.+.... ++++-.-..|...|.++++..-.+.
T Consensus 279 d~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg 310 (477)
T PF05935_consen 279 DPSDDSIIVSSRHQSAVIKIDYRTGKIKWILG 310 (477)
T ss_dssp ETTTTEEEEEETTT-EEEEEE-TTS-EEEEES
T ss_pred eCCCCeEEEEcCcceEEEEEECCCCcEEEEeC
Confidence 984444 4554445588888987777665554
No 483
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=83.27 E-value=64 Score=38.00 Aligned_cols=174 Identities=15% Similarity=0.192 Sum_probs=93.2
Q ss_pred cEEEEECCCCcEEEEeeCCCc-----ceEEEEccCCCCCcEEEEEE-----------cCCeEEEEeCC-CCceEEEEcC-
Q 007411 380 NIKYWDTETGQVIRTFSTGKI-----PYVVKLNPDDDKQNILLAGM-----------SDKKIVQWDMN-TKEITQEYDQ- 441 (604)
Q Consensus 380 ~I~vWD~~t~~~i~~~~~~~~-----~~~~~~~~~~~~~~~lvsg~-----------~dg~I~iwD~~-s~~~~~~~~~- 441 (604)
.|++.|..+++.+..+..+.. ...+.|+..+ ...++++|. .+|.++.|++- .++.+.-+..
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~-~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T 932 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSE-YQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKT 932 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCC-CceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeecc
Confidence 478888888877776654332 1222232222 223444443 24556777653 3442222211
Q ss_pred -cCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCC-CCcccEEEEcCCCCEEEEEEcCCeEEEEEcCCce
Q 007411 442 -HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPH-MHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF 519 (604)
Q Consensus 442 -h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~-~~~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~~~ 519 (604)
-.+.| .++.|-..++++| -...+++||+...+.++...... ...|+.+.+ .+..+++|...-.+.++..+...
T Consensus 933 ~~~~~v--~Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~ 1007 (1205)
T KOG1898|consen 933 EIPGPV--GAICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRRED 1007 (1205)
T ss_pred CCCccc--eEEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCC
Confidence 12333 3455555555554 45789999998877665544333 334555555 46677777766666655443211
Q ss_pred eecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeC
Q 007411 520 QLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 562 (604)
Q Consensus 520 ~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~ 562 (604)
+.+..+.......+++.+.+ -|...++.++.-|.+++-.+
T Consensus 1008 --n~l~~fadD~~pR~Vt~~~~-lD~~tvagaDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen 1008 --NQLIVFADDPVPRHVTALEL-LDYDTVAGADRFGNIAVVRI 1047 (1205)
T ss_pred --CeEEEEeCCCccceeeEEEE-ecCCceeeccccCcEEEEEC
Confidence 11223333333455554444 34556778888888877754
No 484
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=83.13 E-value=61 Score=33.57 Aligned_cols=26 Identities=12% Similarity=0.325 Sum_probs=16.9
Q ss_pred CCCEEEEEECC-----------CcEEEEECCCCcEEE
Q 007411 368 DGTKFLTASYD-----------KNIKYWDTETGQVIR 393 (604)
Q Consensus 368 dg~~L~s~s~D-----------g~I~vWD~~t~~~i~ 393 (604)
++.+.+.|+.+ ..+..||..+.+-..
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~ 99 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQK 99 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEec
Confidence 67777777753 246678887765443
No 485
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=82.99 E-value=1e+02 Score=36.04 Aligned_cols=157 Identities=13% Similarity=0.200 Sum_probs=95.0
Q ss_pred CCCCceeeEEEc---c----CCCEEEEEECCCcEEEEECCCC---------------cEEEEee----CCCcceEEEEcc
Q 007411 355 GHSKAVRDISFC---N----DGTKFLTASYDKNIKYWDTETG---------------QVIRTFS----TGKIPYVVKLNP 408 (604)
Q Consensus 355 ~h~~~V~~l~fs---p----dg~~L~s~s~Dg~I~vWD~~t~---------------~~i~~~~----~~~~~~~~~~~~ 408 (604)
.-..+|..|+|. . ..++|+ .-....+.|+...-. .++..+. .+....-++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~-Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLA-VRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEE-EEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 466789999998 2 123444 444566777762211 2333333 334445677877
Q ss_pred CCCCCcEEEEEEcCCeEEEEeCCCC-----ceEEEEcCcCCce----------eEEEEeCCCCEEEEEeCCCcEEEEECC
Q 007411 409 DDDKQNILLAGMSDKKIVQWDMNTK-----EITQEYDQHLGAV----------NTITFVDSNRRFVTSSDDKSLRVWEFG 473 (604)
Q Consensus 409 ~~~~~~~lvsg~~dg~I~iwD~~s~-----~~~~~~~~h~~~V----------~~i~~sp~~~~l~sgs~Dg~I~iwdl~ 473 (604)
... ..|++....|...||++..+ ........+.+.| ..|.|.++.+.|++++. ..+.++|+.
T Consensus 156 ~~~--~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~ 232 (765)
T PF10214_consen 156 WDQ--RQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFE 232 (765)
T ss_pred Ccc--ceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECC
Confidence 655 47999999999999999211 1111111222222 36888888788888775 568999998
Q ss_pred CCeEEE-EeecCCCCcccEEEEcCC--CCEEEEEEcCCeEEEEEcCC
Q 007411 474 IPVVIK-YISEPHMHSMPSISLHPN--TNWLAAQSLDNQILIYSTRE 517 (604)
Q Consensus 474 ~~~~~~-~~~~~~~~~v~~l~~sp~--g~~l~s~s~Dg~I~iwd~~~ 517 (604)
...... .+.......|..+.-+|. +..|+. ....|.++++..
T Consensus 233 ~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL--Ts~eiiw~~~~~ 277 (765)
T PF10214_consen 233 SNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL--TSKEIIWLDVKS 277 (765)
T ss_pred CCCccchhccCCChhheeeEEecCCccceEEEE--ecCeEEEEEccC
Confidence 876644 222234456888888876 333333 236677777765
No 486
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.56 E-value=9.4 Score=45.48 Aligned_cols=169 Identities=16% Similarity=0.289 Sum_probs=97.3
Q ss_pred ccCcceeEEecCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEE--------ccCCCE
Q 007411 300 YIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISF--------CNDGTK 371 (604)
Q Consensus 300 ~~p~~~i~tl~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~f--------spdg~~ 371 (604)
-+|..++..+. |...-+.+-++|.=+..-+ +.|..+.+|+. +++.....+.+-...|..|.. .|.=++
T Consensus 66 ~IP~el~eq~~-~~~~~~~mGiFpeI~RaWi--TiDn~L~lWny-~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~Iqh 141 (1311)
T KOG1900|consen 66 NIPDELLEQFS-NIECKTDMGIFPEIGRAWI--TIDNNLFLWNY-ESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQH 141 (1311)
T ss_pred cCCHHHHHHhc-CcceeeeeccchhhcceEE--EeCCeEEEEEc-CCCCccccccchhhhheeeeeecCCCCcchhhhhe
Confidence 35667777765 6666667777776444444 34788999999 455666667776677766653 333344
Q ss_pred EEEEECCCcEEEEECCC----CcE---EEEeeCCC-cceEEEEccCCCCCcEEEEEEcCCeEEEE--eCCCC---c-e--
Q 007411 372 FLTASYDKNIKYWDTET----GQV---IRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQW--DMNTK---E-I-- 435 (604)
Q Consensus 372 L~s~s~Dg~I~vWD~~t----~~~---i~~~~~~~-~~~~~~~~~~~~~~~~lvsg~~dg~I~iw--D~~s~---~-~-- 435 (604)
++..+.--.|.|+-+.- +.. ...+.... ...+.++. ...++.+|++| .||.|+-. ....+ + +
T Consensus 142 lLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~-~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~K 219 (1311)
T KOG1900|consen 142 LLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCIT-YTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRK 219 (1311)
T ss_pred eEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEE-eccCCcEEEee-cCCCEEEEEEeccCchhhccccc
Confidence 55444445666664421 111 11122222 22222332 22344555554 55544432 21111 0 0
Q ss_pred --------------EEEEc-CcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 007411 436 --------------TQEYD-QHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGI 474 (604)
Q Consensus 436 --------------~~~~~-~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~ 474 (604)
+..+. .+..+|..|.+......+.+-+..|+|.+||+..
T Consensus 220 iclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 220 ICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 11122 4577999999998888999999999999999975
No 487
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=81.95 E-value=73 Score=33.61 Aligned_cols=201 Identities=11% Similarity=0.165 Sum_probs=108.4
Q ss_pred CCCEEEEEECCCcEEEEECCCCcEEEEeeCCCcceE-E--EEccCCCCCcEEEEEEcC---CeEEEEeCC--CCceEEEE
Q 007411 368 DGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV-V--KLNPDDDKQNILLAGMSD---KKIVQWDMN--TKEITQEY 439 (604)
Q Consensus 368 dg~~L~s~s~Dg~I~vWD~~t~~~i~~~~~~~~~~~-~--~~~~~~~~~~~lvsg~~d---g~I~iwD~~--s~~~~~~~ 439 (604)
...+++.....+-+.+||+. |+.+..+..+....+ + .|...+..-.++++...+ ..|++|-+. ++. +..+
T Consensus 67 ~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L~~v 144 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLD-GKELQSLPVGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-LTDV 144 (381)
T ss_dssp GG-EEEEEETTTEEEEEETT-S-EEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-EEE-
T ss_pred ccceEEEEeCCCCEEEEcCC-CcEEEeecCCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-ceEc
Confidence 45688888888999999987 566676655443221 1 122222211133444433 478888664 443 3333
Q ss_pred cC-------cCCceeEEEEe--C-CCC-EEEEEeCCCcEEEEECC---CC----eEEEEeecCCCCcccEEEEcCCCCEE
Q 007411 440 DQ-------HLGAVNTITFV--D-SNR-RFVTSSDDKSLRVWEFG---IP----VVIKYISEPHMHSMPSISLHPNTNWL 501 (604)
Q Consensus 440 ~~-------h~~~V~~i~~s--p-~~~-~l~sgs~Dg~I~iwdl~---~~----~~~~~~~~~~~~~v~~l~~sp~g~~l 501 (604)
.. ....+..+|+- + ++. +.+....+|.+..|.+. .+ ..++.+.. ...+-.|.......+|
T Consensus 145 ~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~--~sQ~EGCVVDDe~g~L 222 (381)
T PF02333_consen 145 TDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV--GSQPEGCVVDDETGRL 222 (381)
T ss_dssp CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE---SS-EEEEEEETTTTEE
T ss_pred CCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC--CCcceEEEEecccCCE
Confidence 21 12346677764 3 344 56677888988888774 22 34555543 3468888898888899
Q ss_pred EEEEcCCeEEEEEcCCceee--cccccccCcccccceEEEEE--cCCC-CEE-EEEcCCCcEEEEeCCC-CeeEEEEe
Q 007411 502 AAQSLDNQILIYSTRERFQL--NKKKRFAGHIVAGYACQVNF--SPDG-RFV-MSGDGEGKCWFWDWKS-CKVFRTLK 572 (604)
Q Consensus 502 ~s~s~Dg~I~iwd~~~~~~~--~~~~~~~~~~~~~~v~~l~~--spdg-~~L-~sgs~dG~I~iwd~~t-~~~~~~l~ 572 (604)
..+-.+--|.-|+....... ..+....+.....-+-.|++ ..+| .|| +|.-.++...||+... ...+..|.
T Consensus 223 YvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f~ 300 (381)
T PF02333_consen 223 YVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGSFR 300 (381)
T ss_dssp EEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEEEE
T ss_pred EEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccceEE
Confidence 99999988988887632211 11111222222233444554 3343 244 4555688999999865 34444443
No 488
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=81.51 E-value=45 Score=35.79 Aligned_cols=30 Identities=23% Similarity=0.441 Sum_probs=24.9
Q ss_pred ceEEEEEcCCCCEEEEEcCCCcEEEEeCCC
Q 007411 535 YACQVNFSPDGRFVMSGDGEGKCWFWDWKS 564 (604)
Q Consensus 535 ~v~~l~~spdg~~L~sgs~dG~I~iwd~~t 564 (604)
.+.++...+..+.|++.+.+|.|.+|++..
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 378899999889999999999999999974
No 489
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=81.12 E-value=7.4 Score=43.45 Aligned_cols=72 Identities=19% Similarity=0.285 Sum_probs=44.3
Q ss_pred CCEEEEEECCCcEEEEecCC---CCeeeEE-ecC---------------------CCCceeeEEEcc----CCCEEEEEE
Q 007411 326 GHLILSAGMDTKVKIWDVVN---SGKCMRT-YMG---------------------HSKAVRDISFCN----DGTKFLTAS 376 (604)
Q Consensus 326 g~~L~sgs~Dg~I~IWd~~~---~~~~~~~-~~~---------------------h~~~V~~l~fsp----dg~~L~s~s 376 (604)
...|+.+..||.+....... .+..... ... -...+..++++. +..+|++.+
T Consensus 158 ~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~ 237 (547)
T PF11715_consen 158 EANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLS 237 (547)
T ss_dssp SSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEE
T ss_pred CCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEe
Confidence 56777777888887777632 1211111 110 123455566665 678999999
Q ss_pred CCCcEEEEECCCCcEEEEeeC
Q 007411 377 YDKNIKYWDTETGQVIRTFST 397 (604)
Q Consensus 377 ~Dg~I~vWD~~t~~~i~~~~~ 397 (604)
.|++||+||+.+++++.....
T Consensus 238 ~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 238 RDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp TTSEEEEEETTTTCEEEEEET
T ss_pred CCCeEEEEECCCCeEEEEecc
Confidence 999999999999999776643
No 490
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=80.54 E-value=97 Score=34.13 Aligned_cols=228 Identities=15% Similarity=0.206 Sum_probs=109.3
Q ss_pred ccCCCEEEEEECCCcEEEEECCCCc---EEEEeeC-CCcceEEEEccCCCCCcEEEEEEc--CCeEEEEeCCCCceEEEE
Q 007411 366 CNDGTKFLTASYDKNIKYWDTETGQ---VIRTFST-GKIPYVVKLNPDDDKQNILLAGMS--DKKIVQWDMNTKEITQEY 439 (604)
Q Consensus 366 spdg~~L~s~s~Dg~I~vWD~~t~~---~i~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~--dg~I~iwD~~s~~~~~~~ 439 (604)
..++..++.+..+|.+....+.... .+..+.. .....++.+...+ ..++++|+. |+.+..|....-+.+..+
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g--~d~lf~gs~~gds~l~~~~~~~l~~~~~~ 296 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNG--GDYLFVGSEFGDSQLLQISLSNLEVLDSL 296 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT----EEEEEESSS-EEEEEEESESEEEEEEE
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCC--CEEEEEEEecCCcEEEEEeCCCcEEEEec
Confidence 3467789999999999988776544 2333322 3334444444433 347888876 455666665555666666
Q ss_pred cCcCCceeEEEEeCC----CC------EEEEEe---CCCcEEEEECCCCeE--E-EEeecCCCCcccEEEEcC-CCCEEE
Q 007411 440 DQHLGAVNTITFVDS----NR------RFVTSS---DDKSLRVWEFGIPVV--I-KYISEPHMHSMPSISLHP-NTNWLA 502 (604)
Q Consensus 440 ~~h~~~V~~i~~sp~----~~------~l~sgs---~Dg~I~iwdl~~~~~--~-~~~~~~~~~~v~~l~~sp-~g~~l~ 502 (604)
. .-++|..+++.+. .. .|++++ .+|+|++..-.-+.. . .....+.-..++.+.... ++.+|+
T Consensus 297 ~-N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv 375 (504)
T PF10433_consen 297 P-NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLV 375 (504)
T ss_dssp -----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEE
T ss_pred c-CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEE
Confidence 4 5688999988642 21 556554 467888875432222 1 111111223344444332 245666
Q ss_pred EEEcCCeEEEEEcC---CceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCC-cE
Q 007411 503 AQSLDNQILIYSTR---ERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEG-VC 578 (604)
Q Consensus 503 s~s~Dg~I~iwd~~---~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~-~V 578 (604)
.+..+ .-+++.+. ....+..... .+-.....-..+..-. +..++=.... .|++.+...++....+....+ .|
T Consensus 376 ~S~~~-~T~vl~~~~~d~~e~~~e~~~-~~f~~~~~Tl~~~~~~-~~~ivQVt~~-~i~l~~~~~~~~~~~w~~~~~~~I 451 (504)
T PF10433_consen 376 LSFPN-ETRVLQISEGDDGEEVEEVEE-DGFDTDEPTLAAGNVG-DGRIVQVTPK-GIRLIDLEDGKLTQEWKPPAGSII 451 (504)
T ss_dssp EEESS-EEEEEEES----SSEEEEE----TS-SSS-EEEEEEET-TTEEEEEESS-EEEEEESSSTSEEEEEE-TTS---
T ss_pred EEcCC-ceEEEEEecccCCcchhhhhh-ccCCCCCCCeEEEEcC-CCeEEEEecC-eEEEEECCCCeEEEEEeCCCCCeE
Confidence 65544 45555553 1222211110 0111111111222222 4455555444 488888878777777654433 45
Q ss_pred EEEEEecCCCCEEEEEeCCCcEEEe
Q 007411 579 IGCEWHPLEQSKVATCGWDGLIKYW 603 (604)
Q Consensus 579 ~~v~~sp~~~~~l~tgg~DG~I~vW 603 (604)
.+.+... .+++.+-.+|.+.++
T Consensus 452 ~~a~~~~---~~v~v~~~~~~~~~~ 473 (504)
T PF10433_consen 452 VAASIND---PQVLVALSGGELVYF 473 (504)
T ss_dssp SEEEESS---SEEEEEE-TTEEEEE
T ss_pred EEEEECC---CEEEEEEeCCcEEEE
Confidence 5555543 345544446666543
No 491
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.43 E-value=12 Score=44.68 Aligned_cols=137 Identities=12% Similarity=0.193 Sum_probs=80.4
Q ss_pred CCCcEEEEECCCCeEEEEeecCCCCcccEEEE--------cCCCCEEEEEEcCCeEEEEEcCCceeecccccccC----c
Q 007411 463 DDKSLRVWEFGIPVVIKYISEPHMHSMPSISL--------HPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAG----H 530 (604)
Q Consensus 463 ~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~--------sp~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~----~ 530 (604)
-|+.+.+|++.+......+. ...+.|..+.+ -|.=+++++.+.--.|.++-+.-.........+.. .
T Consensus 97 iDn~L~lWny~~~~e~~~~d-~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNELAEYD-GLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred eCCeEEEEEcCCCCcccccc-chhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 47889999999866655553 24444544433 22334555555555666665432211111111111 1
Q ss_pred ccccceEEEEEcCCCCEEEEEcCCCcEEEEeCC----C----Cee----------------EEEEe-cCCCcEEEEEEec
Q 007411 531 IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK----S----CKV----------------FRTLK-CHEGVCIGCEWHP 585 (604)
Q Consensus 531 ~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~----t----~~~----------------~~~l~-~h~~~V~~v~~sp 585 (604)
.....|.++....+|+.+++|- || .+|.+. . .++ +-.+. .+..+|..+....
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~ 252 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN 252 (1311)
T ss_pred cCCceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence 2345678888888998887775 45 444321 1 100 11222 4567899999877
Q ss_pred CCCCEEEEEeCCCcEEEeC
Q 007411 586 LEQSKVATCGWDGLIKYWD 604 (604)
Q Consensus 586 ~~~~~l~tgg~DG~I~vWD 604 (604)
...++.+-+..|+|.+||
T Consensus 253 -SR~IlY~lsek~~v~~Y~ 270 (1311)
T KOG1900|consen 253 -SRNILYVLSEKGTVSAYD 270 (1311)
T ss_pred -ccceeeeeccCceEEEEE
Confidence 667899999999999996
No 492
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=80.12 E-value=15 Score=41.15 Aligned_cols=67 Identities=21% Similarity=0.405 Sum_probs=44.2
Q ss_pred CCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCCCceeeEEEccCCCEEEEEECCCcEEEEE
Q 007411 314 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWD 385 (604)
Q Consensus 314 ~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~L~s~s~Dg~I~vWD 385 (604)
..+++|.-+|. +.-+++++.||.|++|+.. .+.... +-....+-..+.|...| |+++..|+.+.-|.
T Consensus 15 e~~~aiqshp~-~~s~v~~~~d~si~lfn~~-~r~qsk-i~~~~~p~~nlv~tnhg--l~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 15 EFTTAIQSHPG-GQSFVLAHQDGSIILFNFI-PRRQSK-ICEEAKPKENLVFTNHG--LVTATSDRRALAWK 81 (1636)
T ss_pred ceeeeeeecCC-CceEEEEecCCcEEEEeec-ccchhh-hhhhcCCccceeeeccc--eEEEeccchhheee
Confidence 34677888888 8999999999999999983 222211 11122334456665544 66677777777775
No 493
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=79.52 E-value=8.1 Score=43.12 Aligned_cols=77 Identities=12% Similarity=0.169 Sum_probs=45.8
Q ss_pred CCCCEEEEEEcCCeEEEEEcCC----ceeecc-----------ccccc------CcccccceEEEEEcC----CCCEEEE
Q 007411 496 PNTNWLAAQSLDNQILIYSTRE----RFQLNK-----------KKRFA------GHIVAGYACQVNFSP----DGRFVMS 550 (604)
Q Consensus 496 p~g~~l~s~s~Dg~I~iwd~~~----~~~~~~-----------~~~~~------~~~~~~~v~~l~~sp----dg~~L~s 550 (604)
++...|+++..||.+....... +..... ...+. .......+..+++++ +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4667788888888888877654 110000 00000 011123445566666 7789999
Q ss_pred EcCCCcEEEEeCCCCeeEEEEe
Q 007411 551 GDGEGKCWFWDWKSCKVFRTLK 572 (604)
Q Consensus 551 gs~dG~I~iwd~~t~~~~~~l~ 572 (604)
.+.|+.|++||+.+++++.+..
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEec
Confidence 9999999999999999977654
No 494
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=79.00 E-value=9.5 Score=25.59 Aligned_cols=40 Identities=23% Similarity=0.229 Sum_probs=29.0
Q ss_pred CCCCEEEEEc-CCCcEEEEeCCCCeeEEEEecCCCcEEEEEE
Q 007411 543 PDGRFVMSGD-GEGKCWFWDWKSCKVFRTLKCHEGVCIGCEW 583 (604)
Q Consensus 543 pdg~~L~sgs-~dG~I~iwd~~t~~~~~~l~~h~~~V~~v~~ 583 (604)
|++++|+++. .++.|.++|..+++.+..+..... ...++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~-P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGY-PFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCC-CceEEe
Confidence 5677776655 578999999999999888886433 344544
No 495
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=78.15 E-value=12 Score=40.33 Aligned_cols=30 Identities=13% Similarity=0.314 Sum_probs=24.9
Q ss_pred cccEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 007411 488 SMPSISLHPNTNWLAAQSLDNQILIYSTRE 517 (604)
Q Consensus 488 ~v~~l~~sp~g~~l~s~s~Dg~I~iwd~~~ 517 (604)
.|..+++.+..+.|++.+.++.|.+|++..
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 488889998889999999999999999964
No 496
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=78.00 E-value=1.5e+02 Score=34.76 Aligned_cols=115 Identities=15% Similarity=0.186 Sum_probs=68.4
Q ss_pred CceeEEEEeCC-CCEEEEEeCCCcEEEEECCCC----eEEEEeecCC----------CCcccEEEEcCCCCEEEEEEcCC
Q 007411 444 GAVNTITFVDS-NRRFVTSSDDKSLRVWEFGIP----VVIKYISEPH----------MHSMPSISLHPNTNWLAAQSLDN 508 (604)
Q Consensus 444 ~~V~~i~~sp~-~~~l~sgs~Dg~I~iwdl~~~----~~~~~~~~~~----------~~~v~~l~~sp~g~~l~s~s~Dg 508 (604)
.+...++|+|. ...|++....|...||++... .......... ......+.|.++...|++++ ..
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-r~ 224 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-RS 224 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-CC
Confidence 46778999985 458999999999999999211 1111111111 12234788988878888766 45
Q ss_pred eEEEEEcCCceeecccccccCcccccceEEEEEcCC--CCEEEEEcCCCcEEEEeCCC
Q 007411 509 QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPD--GRFVMSGDGEGKCWFWDWKS 564 (604)
Q Consensus 509 ~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spd--g~~L~sgs~dG~I~iwd~~t 564 (604)
.+.++|+.+...... +........|..+.-+|. +..++. ....|...++..
T Consensus 225 ~l~~~d~~~~~~~~~---l~~~~~~~~IlDv~~~~~~~~~~FiL--Ts~eiiw~~~~~ 277 (765)
T PF10214_consen 225 KLMLIDFESNWQTEY---LVTAKTWSWILDVKRSPDNPSHVFIL--TSKEIIWLDVKS 277 (765)
T ss_pred ceEEEECCCCCccch---hccCCChhheeeEEecCCccceEEEE--ecCeEEEEEccC
Confidence 588889887644322 111222456777777776 333322 224566666554
No 497
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=77.64 E-value=78 Score=36.93 Aligned_cols=67 Identities=13% Similarity=0.064 Sum_probs=47.0
Q ss_pred cceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEE----ec---------------CCCcEEEEEEecCCCCEEEEE
Q 007411 534 GYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTL----KC---------------HEGVCIGCEWHPLEQSKVATC 594 (604)
Q Consensus 534 ~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t~~~~~~l----~~---------------h~~~V~~v~~sp~~~~~l~tg 594 (604)
..|.+++...-+.+|+....||+|.++|..+.+.+... .. +-..+..++||| ....++..
T Consensus 260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSP-t~c~~v~~ 338 (753)
T PF11635_consen 260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSP-TMCSLVQI 338 (753)
T ss_pred CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECc-ccceEEEE
Confidence 45667777777889999999999999998876554433 10 011334588999 66677888
Q ss_pred eCCCcEE
Q 007411 595 GWDGLIK 601 (604)
Q Consensus 595 g~DG~I~ 601 (604)
..+|.+.
T Consensus 339 ~~~~~~~ 345 (753)
T PF11635_consen 339 DEDGKTK 345 (753)
T ss_pred ecCCCce
Confidence 8888754
No 498
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=77.40 E-value=1.2e+02 Score=33.45 Aligned_cols=272 Identities=13% Similarity=0.024 Sum_probs=126.2
Q ss_pred CCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCeeeEEecCCC-CceeeEEEccCCCEEEEEECCCcEEEEECCCCcEE
Q 007411 314 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHS-KAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVI 392 (604)
Q Consensus 314 ~~V~~l~fsp~~g~~L~sgs~Dg~I~IWd~~~~~~~~~~~~~h~-~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i 392 (604)
..|..+.+.-. + .|..|+.||-. .||. ..++.+..-.... .+|..+..+-.|+ |..|+.+| |.+.+.+..+..
T Consensus 165 ~~V~aLv~D~~-g-~lWvgT~dGL~-~fd~-~~gkalql~s~~~dk~I~al~~d~qg~-LWVGTdqG-v~~~e~~G~~~s 238 (671)
T COG3292 165 TPVVALVFDAN-G-RLWVGTPDGLS-YFDA-GRGKALQLASPPLDKAINALIADVQGR-LWVGTDQG-VYLQEAEGWRAS 238 (671)
T ss_pred ccceeeeeecc-C-cEEEecCCcce-EEcc-ccceEEEcCCCcchhhHHHHHHHhcCc-EEEEeccc-eEEEchhhcccc
Confidence 45777777766 3 67778878744 4555 3455544433333 6677776666664 66676655 777776652222
Q ss_pred EEeeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceEEEEcCcC--CceeEEEEeCCCCEEEEEeCCCcEEEE
Q 007411 393 RTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHL--GAVNTITFVDSNRRFVTSSDDKSLRVW 470 (604)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~~~~~~h~--~~V~~i~~sp~~~~l~sgs~Dg~I~iw 470 (604)
.-...-....+.....+. +..+-.|+.+|..+.--.+.+-.....+.|. +.|+++....+| .+.+++.++.+++-
T Consensus 239 n~~~~lp~~~I~ll~qD~--qG~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dG-sLWv~t~~giv~~~ 315 (671)
T COG3292 239 NWGPMLPSGNILLLVQDA--QGELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDG-SLWVGTYGGIVRYL 315 (671)
T ss_pred ccCCCCcchheeeeeccc--CCCEEEeecccceeEecCCCCccccccccCCccccccceeeccCC-CEeeeccCceEEEe
Confidence 111111112223333322 3457777777655443333332222222232 355666666565 45566666665554
Q ss_pred ECCCCeEEEEeecCCCCcccEEEEcC--CCCEEEEEEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcCCCCEE
Q 007411 471 EFGIPVVIKYISEPHMHSMPSISLHP--NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFV 548 (604)
Q Consensus 471 dl~~~~~~~~~~~~~~~~v~~l~~sp--~g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L 548 (604)
+-. -.....+.......+..++..| .+..+-....-|.+.+-+-.++..+.......+ ..|+.+++..+| .+
T Consensus 316 ~a~-w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg----~nit~~~~d~~g-~l 389 (671)
T COG3292 316 TAD-WKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRG----MNITTTLEDSRG-RL 389 (671)
T ss_pred cch-hhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccc----cccchhhhccCC-cE
Confidence 321 1111112111111111222222 111111111122223333233333322222222 223345555544 45
Q ss_pred EEEcCCCcEEEEeCCC-CeeEEEEec-CCCcEEEEEEecCCCCEEEEEeCCCcEEE
Q 007411 549 MSGDGEGKCWFWDWKS-CKVFRTLKC-HEGVCIGCEWHPLEQSKVATCGWDGLIKY 602 (604)
Q Consensus 549 ~sgs~dG~I~iwd~~t-~~~~~~l~~-h~~~V~~v~~sp~~~~~l~tgg~DG~I~v 602 (604)
..|+...-+..|+-++ +..+....+ ..+.|..+.=.| +++ |..|+.+|.++.
T Consensus 390 Wlgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~-dns-LWIGTs~Glvk~ 443 (671)
T COG3292 390 WLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDP-DNS-LWIGTSGGLVKR 443 (671)
T ss_pred EEEecccchhhhccCCcccccccccCCcccceeeeeecC-CCC-EEEeccCCeEec
Confidence 5566554455666555 333333332 345677776667 343 777888887653
No 499
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=77.27 E-value=88 Score=31.81 Aligned_cols=221 Identities=10% Similarity=0.102 Sum_probs=119.3
Q ss_pred eeeEEEccCCCEEEEEECCCcEEEEECC------CC-cEEEEeeC------CCcceEEEEccCCC---------CCcEEE
Q 007411 360 VRDISFCNDGTKFLTASYDKNIKYWDTE------TG-QVIRTFST------GKIPYVVKLNPDDD---------KQNILL 417 (604)
Q Consensus 360 V~~l~fspdg~~L~s~s~Dg~I~vWD~~------t~-~~i~~~~~------~~~~~~~~~~~~~~---------~~~~lv 417 (604)
-+.|+|+|.+.+-++....+...+||.. .. ..+-.+.. ...+.-+.++.... ....++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4678999988877777778899999986 12 22233321 12333333332211 123478
Q ss_pred EEEcCCeEEEEeCCCCce-----EEEEcC-cCCce-eEEEEeC--CCCEEEEE-eCCCcEEEEECCCCeEEE--EeecC-
Q 007411 418 AGMSDKKIVQWDMNTKEI-----TQEYDQ-HLGAV-NTITFVD--SNRRFVTS-SDDKSLRVWEFGIPVVIK--YISEP- 484 (604)
Q Consensus 418 sg~~dg~I~iwD~~s~~~-----~~~~~~-h~~~V-~~i~~sp--~~~~l~sg-s~Dg~I~iwdl~~~~~~~--~~~~~- 484 (604)
.++.||+|.-|...-+.. ...+.. ..+.| ..+++.. .+.+|..+ -..++|.|||-.-..... .+..+
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~ 184 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA 184 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence 889999999998643221 122221 12333 3445443 24444443 467889999854322110 01111
Q ss_pred --CCCcccEEEEcCCCCEEEE-------------EEcCCeEEEEEcCCceeecccccccCcccccceEEEEEcC------
Q 007411 485 --HMHSMPSISLHPNTNWLAA-------------QSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP------ 543 (604)
Q Consensus 485 --~~~~v~~l~~sp~g~~l~s-------------~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp------ 543 (604)
.......|.-. .++++++ +..-|.|-+||+...... ++ ...+..+..+ .|+..|
T Consensus 185 iPagyAPFnIqni-g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~-r~-as~g~LNaPW--G~a~APa~FG~~ 259 (336)
T TIGR03118 185 LPAGYAPFNVQNL-GGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLR-RV-ASSGRLNAPW--GLAIAPESFGSL 259 (336)
T ss_pred CCCCCCCcceEEE-CCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEE-Ee-ccCCcccCCc--eeeeChhhhCCC
Confidence 00001111100 1222222 223368899998654322 22 2223332322 345444
Q ss_pred CCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCC------cEEEEEEec
Q 007411 544 DGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEG------VCIGCEWHP 585 (604)
Q Consensus 544 dg~~L~sgs~dG~I~iwd~~t~~~~~~l~~h~~------~V~~v~~sp 585 (604)
.|.+|+.--.||+|..||..+++.+..+....+ .++.++|..
T Consensus 260 sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 260 SGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 577787777899999999999998888876543 356777765
No 500
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=76.45 E-value=87 Score=31.33 Aligned_cols=198 Identities=19% Similarity=0.139 Sum_probs=119.1
Q ss_pred CceeeEEEccCCCEEEEEECCCcEEEEECCCCcEEEE-eeCCCcceEEEEccCCCCCcEEEEEEcCCeEEEEeCCCCceE
Q 007411 358 KAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRT-FSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEIT 436 (604)
Q Consensus 358 ~~V~~l~fspdg~~L~s~s~Dg~I~vWD~~t~~~i~~-~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~iwD~~s~~~~ 436 (604)
..-..++-.+||..-+++...+.|--.|..+|+.... +..+..+..+.+-+++. .-++-+.. -|.-+|-++.+..
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~---~Witd~~~-aI~R~dpkt~evt 137 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGS---AWITDTGL-AIGRLDPKTLEVT 137 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCC---eeEecCcc-eeEEecCcccceE
Confidence 3456778888998888888888888889999887654 44455666666666543 22222222 5555666555432
Q ss_pred E---EEcCcCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEE
Q 007411 437 Q---EYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIY 513 (604)
Q Consensus 437 ~---~~~~h~~~V~~i~~sp~~~~l~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~s~Dg~I~iw 513 (604)
. ..+.-........|.+.|++-+++.. |.---.|- ....++.+..+.......||..|+|..-++.-.++.|-..
T Consensus 138 ~f~lp~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdP-a~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiari 215 (353)
T COG4257 138 RFPLPLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDP-ARNVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARI 215 (353)
T ss_pred EeecccccCCCcccceeeCCCccEEEeecc-ccceecCc-ccCceeeeccCCCCCCcceEECCCCcEEEEeccccceEEc
Confidence 2 12233456788899999988887752 21111111 1122333334556667889999999988887788888888
Q ss_pred EcCCceeecccccccCcccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC
Q 007411 514 STRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS 564 (604)
Q Consensus 514 d~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~L~sgs~dG~I~iwd~~t 564 (604)
|....... .+..-... ......+--+|.|+.-++-...+.+..+|-.+
T Consensus 216 dp~~~~ae-v~p~P~~~--~~gsRriwsdpig~~wittwg~g~l~rfdPs~ 263 (353)
T COG4257 216 DPFAGHAE-VVPQPNAL--KAGSRRIWSDPIGRAWITTWGTGSLHRFDPSV 263 (353)
T ss_pred ccccCCcc-eecCCCcc--cccccccccCccCcEEEeccCCceeeEeCccc
Confidence 76654211 11111110 12223455567787777777777787777543
Done!