Query 007412
Match_columns 604
No_of_seqs 295 out of 1075
Neff 4.4
Searched_HMMs 46136
Date Thu Mar 28 23:14:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007412.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007412hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02910 polygalacturonate 4-a 100.0 2E-147 4E-152 1201.5 39.1 538 62-601 24-576 (657)
2 PLN02829 Probable galacturonos 100.0 5E-117 1E-121 963.8 33.7 381 217-601 177-558 (639)
3 PLN02769 Probable galacturonos 100.0 2E-116 5E-121 963.0 37.4 393 193-600 152-548 (629)
4 PLN02742 Probable galacturonos 100.0 5E-110 1E-114 900.0 31.1 383 215-601 66-454 (534)
5 PLN02718 Probable galacturonos 100.0 2E-101 3E-106 843.0 34.2 358 218-600 160-521 (603)
6 PLN02870 Probable galacturonos 100.0 6E-92 1.3E-96 758.7 26.4 341 250-599 91-449 (533)
7 PLN02867 Probable galacturonos 100.0 1.1E-91 2.4E-96 758.9 26.5 335 258-599 95-451 (535)
8 PLN02659 Probable galacturonos 100.0 1.6E-89 3.4E-94 740.1 26.0 327 267-600 107-449 (534)
9 PLN02523 galacturonosyltransfe 100.0 8.1E-88 1.8E-92 728.8 28.1 327 273-601 149-478 (559)
10 cd06429 GT8_like_1 GT8_like_1 100.0 1.3E-40 2.8E-45 336.8 14.4 184 372-599 1-187 (257)
11 PRK15171 lipopolysaccharide 1, 100.0 6.8E-30 1.5E-34 266.9 12.2 180 369-593 23-207 (334)
12 cd00505 Glyco_transf_8 Members 99.9 1.6E-27 3.5E-32 236.5 11.7 177 372-593 1-181 (246)
13 cd04194 GT8_A4GalT_like A4GalT 99.9 3.8E-27 8.2E-32 232.8 13.5 174 372-593 1-180 (248)
14 COG1442 RfaJ Lipopolysaccharid 99.9 2.5E-26 5.5E-31 239.9 12.2 181 371-597 2-188 (325)
15 cd06431 GT8_LARGE_C LARGE cata 99.9 3.5E-26 7.7E-31 234.2 12.8 175 374-593 5-186 (280)
16 cd06432 GT8_HUGT1_C_like The C 99.9 1.6E-25 3.5E-30 225.3 11.1 181 372-592 1-185 (248)
17 PF01501 Glyco_transf_8: Glyco 99.9 1.3E-24 2.9E-29 208.9 13.7 184 373-593 1-186 (250)
18 cd06430 GT8_like_2 GT8_like_2 99.9 1.5E-23 3.3E-28 217.3 11.8 183 372-598 1-202 (304)
19 cd02537 GT8_Glycogenin Glycoge 99.4 5.8E-13 1.3E-17 133.1 10.3 81 482-593 72-152 (240)
20 PLN00176 galactinol synthase 99.3 6.1E-12 1.3E-16 132.8 11.6 92 487-585 100-204 (333)
21 cd06914 GT8_GNT1 GNT1 is a fun 99.0 2.5E-10 5.5E-15 118.0 5.7 81 482-591 75-155 (278)
22 KOG1879 UDP-glucose:glycoprote 98.8 7.7E-09 1.7E-13 121.7 6.2 182 367-588 1177-1362(1470)
23 COG5597 Alpha-N-acetylglucosam 95.6 0.0054 1.2E-07 65.0 1.7 37 487-524 155-191 (368)
24 PF03407 Nucleotid_trans: Nucl 70.8 6.7 0.00015 38.3 4.8 73 484-574 48-121 (212)
25 PF10819 DUF2564: Protein of u 66.9 14 0.0003 32.5 5.3 69 252-321 6-78 (79)
26 PF11051 Mannosyl_trans3: Mann 63.9 4.6 9.9E-05 41.9 2.2 37 488-524 78-114 (271)
27 KOG1928 Alpha-1,4-N-acetylgluc 59.4 4.7 0.0001 44.6 1.4 33 486-522 227-259 (409)
28 TIGR02977 phageshock_pspA phag 40.7 56 0.0012 33.0 5.6 106 219-324 27-136 (219)
29 COG4575 ElaB Uncharacterized c 39.9 96 0.0021 28.8 6.4 74 248-323 11-85 (104)
30 PF04488 Gly_transf_sug: Glyco 37.3 17 0.00037 32.0 1.2 36 482-521 61-97 (103)
31 PF04012 PspA_IM30: PspA/IM30 33.0 88 0.0019 31.2 5.6 104 220-323 27-134 (221)
32 PF05637 Glyco_transf_34: gala 31.5 33 0.00072 35.2 2.3 38 484-522 61-98 (239)
33 PRK10132 hypothetical protein; 27.2 2.1E+02 0.0046 26.4 6.5 75 248-324 15-89 (108)
34 PF11464 Rbsn: Rabenosyn Rab b 27.2 1.2E+02 0.0026 23.8 4.2 38 228-265 1-38 (42)
35 PLN03181 glycosyltransferase; 25.6 72 0.0016 36.1 3.7 36 480-516 179-214 (453)
36 PRK10698 phage shock protein P 24.8 1.5E+02 0.0032 30.4 5.6 103 220-322 28-134 (222)
37 PF03314 DUF273: Protein of un 22.3 61 0.0013 33.6 2.2 25 492-516 33-57 (222)
38 PF09738 DUF2051: Double stran 21.9 1E+03 0.023 25.8 13.1 105 163-267 7-130 (302)
39 PRK15384 type III secretion sy 21.5 41 0.00089 35.6 0.9 69 241-310 66-137 (336)
40 COG1842 PspA Phage shock prote 21.2 8.5E+02 0.018 25.2 10.2 86 238-333 74-159 (225)
41 PRK15383 type III secretion sy 21.1 44 0.00095 35.4 1.0 67 243-310 69-138 (335)
42 PRK15382 non-LEE encoded effec 21.0 44 0.00096 35.4 1.0 70 241-311 61-133 (326)
No 1
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase
Probab=100.00 E-value=1.6e-147 Score=1201.51 Aligned_cols=538 Identities=55% Similarity=0.934 Sum_probs=508.3
Q ss_pred cchhhHHHHHHh--hhhhccchhhHHHhhcccCCCccccccccccCCCCcccEEeccccccccccccCCCc---------
Q 007412 62 QNVHWRERLALR--YIKSLLSKDVIDVIAASTVDLGPLSLDSLRKSNMSASWKFVGAETSVENNATSEPNQ--------- 130 (604)
Q Consensus 62 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 130 (604)
++.+..|..+.+ |++++.++++||+++|||+..|.++|..|++.+||+||++++|..++++++......
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (657)
T PLN02910 24 QDNNLDEVYASSAAGVGNDPDEKDINIVATYSDTSGNIRLGRVKMKDLSASWVLENPADKVHDQPKGSQRLEDSSSFQNG 103 (657)
T ss_pred ccccccccccccCcccCCCccccchhhheeeecccccEEEEeeeeccccchhhhcCccccccCcccccccccchhhhccC
Confidence 333444555655 888999999999999999999999999999999999999999999999988443222
Q ss_pred --hhhhhhhcCCCCCCCCCccCCCC-cccCChHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHhhhccccccccc
Q 007412 131 --KAVRIEKEAPKGKGDNILADGHS-QLVDTPAKQFRRQLRERRREKRAADLVQQDDEAIVKLENAAIERSKSVDSAVLG 207 (604)
Q Consensus 131 --~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 207 (604)
..+.+.++ ++.+.+++|.++| ..+++|+||+||++|++||+.|++||+|||+|++.++|++|||||||||++++|
T Consensus 104 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sk~~d~~~~g 181 (657)
T PLN02910 104 TGEEDNVSHS--TTNQTDESGIQFPNKLPASPVKLQRQILRQERRDLRTAELIQQDKEADSQTQAAAIERSKSLDTSVKG 181 (657)
T ss_pred cccccchhhh--hhhccccccccCcccCCCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHhhhHHHhhhhhccCccccc
Confidence 12333333 5788899999999 899999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCchhHHHHHHhhHHHHHhhhhhhccCCCchHHHHHHHHHHHHHHHhcccccCcCCCCCHHHHHHHHHH
Q 007412 208 KYSIWRKENENDNSDSTVRLMRDQMIMARVYLSIAKMKNKPDLQQELQSRLKESQRALGDTAADADLHHSVPEKIKLMGQ 287 (604)
Q Consensus 208 ~y~~w~~~~~~~~~d~~~r~l~dQl~~AkaY~~iak~~~~~~l~~eL~~~i~e~~r~l~~a~~d~~l~~~~~~~~~~m~~ 287 (604)
||||||+||++.|+|++||+|||||||||||++|||++||++|+|||+++|||+||+||+|++|+|||+++.++|++|++
T Consensus 182 ~y~~w~~e~~~~~~d~~vk~lkDQl~~AkaY~~iak~~~~~~l~~eL~~~i~e~~r~ls~a~~d~dlp~~~~~k~~~M~~ 261 (657)
T PLN02910 182 KYSIWRRDYESPNSDSILKLMRDQIIMAKAYANIAKSNNVTNLYVSLMKQFRENKRAIGEATSDAELHSSALDQAKAMGH 261 (657)
T ss_pred ceeeecccccccCcHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHhhcccccccCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccccChHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhccCCCCcccchhhHhhHHHhcCCcccCCCCCCCCCC
Q 007412 288 VLSKAREQLYDCKLVTGKLRAMLQTADEQVRSLKKQSTFLSQLAAKTIPNGIHCMSMRLTIEYYLLPPEKRKFPGSENLE 367 (604)
Q Consensus 288 ~i~~ak~~~~d~~~~~~kLra~l~~~ee~~~~~~~q~~~~~~laa~~~Pk~lHCL~mrLt~ey~~~~~~~~~~p~~~~l~ 367 (604)
+|++||+++|||+++++|||+||+++||++++||+|++||+||||+|+|||||||+||||+|||++++.++++|++++|+
T Consensus 262 ~l~~ak~~~~d~~~~~~KLraml~~~Ee~~~~~k~qs~~l~qlaa~t~PK~lHCL~mRLt~Ey~~~~~~~~~~p~~~~l~ 341 (657)
T PLN02910 262 VLSIAKDQLYDCHTMARKLRAMLQSTERKVDALKKKSAFLIQLAAKTVPKPLHCLPLQLAADYFLLGFQNKDYVNKKKLE 341 (657)
T ss_pred HHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccchhhHHHHHhCchhhccCCChhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEEEeCCccccccceehhhhccCCCCceEEEEEeCCCchhhhhhhhhcCCCCCcceeeecccchhhcccccchh
Q 007412 368 NPNLYHYALFSDNVLAASVVVNSTIMNAKDSSKHVFHLVTDKLNFGAMNMWFLLNPPGKAAIHVENVDEFKWLNSSYCPV 447 (604)
Q Consensus 368 dp~liHIal~SDNvLaasVvInSil~Nsk~P~~ivFHIVTD~in~~amk~WF~~N~~~~A~VeV~nie~f~wL~~sy~Pv 447 (604)
||+++|||+||||+||+||||||++.|+++|+++|||||||++||+||++||.+||+++|+|||+|+|+|+|++.+|+|+
T Consensus 342 dp~l~Hy~ifSDNVLAaSVVVnSTv~na~~P~k~VFHiVTD~~ny~aM~~WF~~n~~~~A~V~V~nie~f~wln~~~~pv 421 (657)
T PLN02910 342 DPSLYHYAIFSDNVLATSVVVNSTVLHAKEPQKHVFHIVTDKLNFAAMKMWFIINPPAKATIQVENIDDFKWLNSSYCSV 421 (657)
T ss_pred CCcceeEEEEecceeeEEeehhhhhhcccCccceEEEEecCccccHHHHHHHhhCCCccceEEEeehhhcccccccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCcEEEEecCCCCCccccCcccccCCCCCCcchhhhHHhhhhhhcCCCCeEEEEecceeEecCcHHHHhcCCCC
Q 007412 448 LRQLESASMKEYYFKADHPTTLSSGASNLKYRNPKYLSMLNHLRFYLPQVYPKLNKILFLDDDIVVQKDLTRLWSVDLQG 527 (604)
Q Consensus 448 lkqles~~~~~y~F~~~~~~~l~~~~~~~~~rnp~yiS~~~y~Rf~LPeLLP~ldKVLYLD~DVIVqgDLseLw~iDL~g 527 (604)
++|+++..+..|||..++......+..+.++++|+|+|+++|+|||||++||+++||||||+||||++||++||++||+|
T Consensus 422 l~qles~~~~~~yf~~~~~~~~~~~~~~~k~r~p~ylS~lnY~Rf~LPelLp~l~KVLYLD~DVVV~gDLseLw~iDL~g 501 (657)
T PLN02910 422 LRQLESARIKEYYFKANHPSSLSAGADNLKYRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSIDMQG 501 (657)
T ss_pred HHHHhhhhhhhhhhhccccccccccccccccCCcchhhHHHHHHHHHHHHhhhcCeEEEEeCCEEecCchHHHHhCCcCC
Confidence 99999999999999876654443445678899999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeccCchhhhhccccccCCccccccCCCCCCccccceeeeehHHHHhhChHHHHHHHHHHc-CcceEEec
Q 007412 528 KVNGAVETCGESFHRFDKYLNFTNPHIARSFDPNACGWAYGMNMFDLKEWKKKDITGIYHKWQNMV-GRILYLFR 601 (604)
Q Consensus 528 kviAAVeDc~~~f~r~~~yLnfS~P~I~~~fd~~~cYFNSGVLLiDL~kWRe~nIt~k~~~wle~n-dr~Lw~~~ 601 (604)
+++|||+||...|+++..+++|++|.+.+.|+++.||||+|||||||++||+++||+.++.|++.| +..||+.+
T Consensus 502 ~v~AAVedc~~~f~r~~~ylnfs~P~i~~yFNs~aCyfNsGVmVIDL~~WRe~nITe~ye~w~eln~~~~L~dqg 576 (657)
T PLN02910 502 MVNGAVETCKESFHRFDKYLNFSNPKISENFDPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDLNEDRTLWKLG 576 (657)
T ss_pred ceEEEecccchhhhhhhhhhccCChhhhhccCCCCceeecccEEEeHHHHHHhhHHHHHHHHHHhcccccccccC
Confidence 999999999988899999999999999889999999999999999999999999999999999999 99999863
No 2
>PLN02829 Probable galacturonosyltransferase
Probab=100.00 E-value=5e-117 Score=963.79 Aligned_cols=381 Identities=62% Similarity=1.098 Sum_probs=369.2
Q ss_pred CCCCchhHHHHHHhhHHHHHhhhhhhccCCCchHHHHHHHHHHHHHHHhcccccCcCCCCCHHHHHHHHHHHHHHhhccc
Q 007412 217 ENDNSDSTVRLMRDQMIMARVYLSIAKMKNKPDLQQELQSRLKESQRALGDTAADADLHHSVPEKIKLMGQVLSKAREQL 296 (604)
Q Consensus 217 ~~~~~d~~~r~l~dQl~~AkaY~~iak~~~~~~l~~eL~~~i~e~~r~l~~a~~d~~l~~~~~~~~~~m~~~i~~ak~~~ 296 (604)
++.|+|++||+|||||||||||++|||++||++|+||||++|||+||+||+|++|+|||+++.++|++|+++|++||+++
T Consensus 177 ~~~~~d~~v~~lkDql~~AkaY~~iak~~~~~~l~~el~~~i~e~~r~l~~a~~d~~lp~~~~~~~~~m~~~i~~ak~~~ 256 (639)
T PLN02829 177 QTVMPDARVRQLRDQLIKAKVYLSLPATKANPHFTRELRLRIKEVQRVLGDASKDSDLPKNANEKLKAMEQTLAKGKQMQ 256 (639)
T ss_pred cccCchHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHHHhcc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhccCCCCcccchhhHhhHHHhcCCcccCCCCCCCCCCCCCceeEEE
Q 007412 297 YDCKLVTGKLRAMLQTADEQVRSLKKQSTFLSQLAAKTIPNGIHCMSMRLTIEYYLLPPEKRKFPGSENLENPNLYHYAL 376 (604)
Q Consensus 297 ~d~~~~~~kLra~l~~~ee~~~~~~~q~~~~~~laa~~~Pk~lHCL~mrLt~ey~~~~~~~~~~p~~~~l~dp~liHIal 376 (604)
|||+++++|||+|++++||++++||+|++||+||||+|+|||||||+||||+|||++++.++++|++++|+||+++|||+
T Consensus 257 ~d~~~~~~KLr~~l~~~Ee~~~~~~~q~~~l~~laa~t~PK~lHCL~mrLt~Ey~~~~~~~~~~p~~~~l~dp~l~Hy~i 336 (639)
T PLN02829 257 DDCSIVVKKLRAMLHSAEEQLRVHKKQTMFLTQLTAKTLPKGLHCLPLRLTTEYYNLNSSEQQFPNQEKLEDPQLYHYAL 336 (639)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCccccchhhHHHHHhCChhhccCCChhhccCCccceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCccccccceehhhhccCCCCceEEEEEeCCCchhhhhhhhhcCCCCCcceeeecccchhhcccccchhhhhhccCCc
Q 007412 377 FSDNVLAASVVVNSTIMNAKDSSKHVFHLVTDKLNFGAMNMWFLLNPPGKAAIHVENVDEFKWLNSSYCPVLRQLESASM 456 (604)
Q Consensus 377 ~SDNvLaasVvInSil~Nsk~P~~ivFHIVTD~in~~amk~WF~~N~~~~A~VeV~nie~f~wL~~sy~Pvlkqles~~~ 456 (604)
||||+||+||||||++.|+++|+++|||||||++||+||++||.+||+++|+|||+|+|+|+|++.+|+|+++|+++..+
T Consensus 337 fSdNVLAasVVVnStv~na~~p~k~VFHivTD~~ny~aM~~WF~~n~~~~A~v~V~nie~f~wln~~~~pvl~ql~~~~~ 416 (639)
T PLN02829 337 FSDNVLAAAVVVNSTVTNAKHPSKHVFHIVTDRLNYAAMRMWFLVNPPGKATIQVQNIEEFTWLNSSYSPVLKQLGSQSM 416 (639)
T ss_pred EecceeEEEeeeehhhhcccCccceEEEEecCccchHHHHHHHhhCCCccceEEEEehhhcccccccccHHHHHhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCccccCcccccCCCCCCcchhhhHHhhhhhhcCCCCeEEEEecceeEecCcHHHHhcCCCCCeEEEEecc
Q 007412 457 KEYYFKADHPTTLSSGASNLKYRNPKYLSMLNHLRFYLPQVYPKLNKILFLDDDIVVQKDLTRLWSVDLQGKVNGAVETC 536 (604)
Q Consensus 457 ~~y~F~~~~~~~l~~~~~~~~~rnp~yiS~~~y~Rf~LPeLLP~ldKVLYLD~DVIVqgDLseLw~iDL~gkviAAVeDc 536 (604)
+.|+|.....+ ...+.++++|+|+|+++|+|||||++||+++||||||+||||++||++||++||+|+++|||+||
T Consensus 417 ~~~yf~~~~~~----~~~~~k~r~p~ylS~lnY~RfyLPeLLP~LdKVLYLD~DVVVqgDLseLw~iDL~gkviAAVedc 492 (639)
T PLN02829 417 IDYYFRAHRAN----SDSNLKYRNPKYLSILNHLRFYLPEIFPKLNKVLFLDDDIVVQKDLTGLWSIDLKGNVNGAVETC 492 (639)
T ss_pred hhhhhhccccC----cccccccCCcchhhHHHHHHHHHHHHhcccCeEEEEeCCEEeCCChHHHHhCCCCCceEEEeccc
Confidence 99999874432 34567899999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhhccccccCCccccccCCCCCCccccceeeeehHHHHhhChHHHHHHHHHHc-CcceEEec
Q 007412 537 GESFHRFDKYLNFTNPHIARSFDPNACGWAYGMNMFDLKEWKKKDITGIYHKWQNMV-GRILYLFR 601 (604)
Q Consensus 537 ~~~f~r~~~yLnfS~P~I~~~fd~~~cYFNSGVLLiDL~kWRe~nIt~k~~~wle~n-dr~Lw~~~ 601 (604)
...|++|..+++|++|.+..+|++..||||+|||||||++||+++||++|++|+++| ++.+|+.+
T Consensus 493 ~~~f~r~~~~l~fs~p~i~~~Fn~~~CyFNSGVmVINL~~WRe~nITe~y~~wm~~n~~r~L~dlg 558 (639)
T PLN02829 493 GESFHRFDRYLNFSNPLISKNFDPHACGWAYGMNVFDLDEWKRQNITEVYHSWQKLNHDRQLWKLG 558 (639)
T ss_pred hhhhhhhhhhhhccchHhhhccCCcccceecceEEEeHHHHHHhChHHHHHHHHHHccCCcccccc
Confidence 988899999999999999889999999999999999999999999999999999999 99998754
No 3
>PLN02769 Probable galacturonosyltransferase
Probab=100.00 E-value=2.2e-116 Score=963.02 Aligned_cols=393 Identities=37% Similarity=0.636 Sum_probs=364.5
Q ss_pred HHHhhhccccccccccccccccccCCCCchhHHHHHHhhHHHHHhh-hhhhccCCCchHHHHHHHHHHHHHHHhcccccC
Q 007412 193 AAIERSKSVDSAVLGKYSIWRKENENDNSDSTVRLMRDQMIMARVY-LSIAKMKNKPDLQQELQSRLKESQRALGDTAAD 271 (604)
Q Consensus 193 ~~~~~~~~~~~~~~g~y~~w~~~~~~~~~d~~~r~l~dQl~~AkaY-~~iak~~~~~~l~~eL~~~i~e~~r~l~~a~~d 271 (604)
-+.|.+|+|+. +|||||+||+||++.|+|++||+||||||||||| ++|||++||++|+|||+++|||+||+||||++|
T Consensus 152 ~~~e~~~~c~~-~~g~y~~w~~e~~~~~~d~~~~~l~Dql~~Ak~y~~~iak~~~~~~l~~el~~~i~e~~~~l~~~~~d 230 (629)
T PLN02769 152 DEDENEKSCEL-EFGSYCLWSEEHKEVMKDSIVKRLKDQLFVARAYYPSIAKLPGQEKLTRELKQNIQEHERVLSESITD 230 (629)
T ss_pred cccccccccee-eccceeeecccccccCcHHHHHHHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHHhhcccc
Confidence 34577899996 9999999999999999999999999999999998 799999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhccCCCCcccchhhHhhHHHh
Q 007412 272 ADLHHSVPEKIKLMGQVLSKAREQLYDCKLVTGKLRAMLQTADEQVRSLKKQSTFLSQLAAKTIPNGIHCMSMRLTIEYY 351 (604)
Q Consensus 272 ~~l~~~~~~~~~~m~~~i~~ak~~~~d~~~~~~kLra~l~~~ee~~~~~~~q~~~~~~laa~~~Pk~lHCL~mrLt~ey~ 351 (604)
+|||+++.++|++|+++|++||+++|||.++++||||||++|||++++|++|++||+||||+|+|||||||+||||+|||
T Consensus 231 ~dlp~~~~~~~~~m~~~~~~ak~~~~dc~~~~~klr~~l~~~E~~~~~~~kq~~~l~~laa~t~PK~lHCL~mrLt~ey~ 310 (629)
T PLN02769 231 ADLPPFIQKKLEKMEQTIARAKSCPVDCNNVDRKLRQILDMTEDEAHFHMKQSAFLYQLGVQTMPKSHHCLSMRLTVEYF 310 (629)
T ss_pred ccCChhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccchhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccCCCCCCCCCCCCCceeEEEEeCCccccccceehhhhccCCCCceEEEEEeCCCchhhhhhhhhcCCCCCcceee
Q 007412 352 LLPPEKRKFPGSENLENPNLYHYALFSDNVLAASVVVNSTIMNAKDSSKHVFHLVTDKLNFGAMNMWFLLNPPGKAAIHV 431 (604)
Q Consensus 352 ~~~~~~~~~p~~~~l~dp~liHIal~SDNvLaasVvInSil~Nsk~P~~ivFHIVTD~in~~amk~WF~~N~~~~A~VeV 431 (604)
++++.++++|++++|+||+++|||+||||+||++||||||+.|+++|+++|||||||++|++||++||.+|++++|+|||
T Consensus 311 ~~~~~~~~~~~~~~l~d~~l~Hy~ifSdNvlAasvvvNStv~na~~p~~~VFHiVTD~~n~~am~~WF~~n~~~~a~v~v 390 (629)
T PLN02769 311 KSSSLDMEDSNSEKFSDPSLRHYVIFSKNVLAASVVINSTVVHSRESGNIVFHVLTDAQNYYAMKHWFDRNSYKEAAVQV 390 (629)
T ss_pred hCchhhccCCchhhccCCccceEEEEeccceeeeeehhhhhhhccCccceEEEEecChhhHHHHHHHHhcCCCccceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccchhhcccccchhhhhhccCCcEEEEecCCCCCccccCcccccCCCCCCcchhhhHHhhhhhhcCCCCeEEEEecce
Q 007412 432 ENVDEFKWLNSSYCPVLRQLESASMKEYYFKADHPTTLSSGASNLKYRNPKYLSMLNHLRFYLPQVYPKLNKILFLDDDI 511 (604)
Q Consensus 432 ~nie~f~wL~~sy~Pvlkqles~~~~~y~F~~~~~~~l~~~~~~~~~rnp~yiS~~~y~Rf~LPeLLP~ldKVLYLD~DV 511 (604)
+|+|+|+|.+. ..|+++|++......++|..... ...++++|+|+|+++|+|||||++||+++||||||+||
T Consensus 391 ~n~e~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~-------~~~~~~~~eyiS~~nh~RfyIPELLP~LdKVLYLD~DV 462 (629)
T PLN02769 391 LNIEDLILKDL-DKFALKQLSLPEEFRVSFRSVDN-------PSSKQMRTEYLSVFSHSHFLLPEIFKKLKKVVVLDDDV 462 (629)
T ss_pred eeeeeeeeccc-chHHHHhhccchhhhhhhccCCC-------CchhccCcccccHHHHHHHHHHHHhhhcCeEEEEeCCE
Confidence 99999999765 58999999887765555543321 11355689999999999999999999999999999999
Q ss_pred eEecCcHHHHhcCCCCCeEEEEeccCchhhhhccccccCCccccccCCCCCCccccceeeeehHHHHhhChHHHHHHHHH
Q 007412 512 VVQKDLTRLWSVDLQGKVNGAVETCGESFHRFDKYLNFTNPHIARSFDPNACGWAYGMNMFDLKEWKKKDITGIYHKWQN 591 (604)
Q Consensus 512 IVqgDLseLw~iDL~gkviAAVeDc~~~f~r~~~yLnfS~P~I~~~fd~~~cYFNSGVLLiDL~kWRe~nIt~k~~~wle 591 (604)
||++||++||++||+|+++|||+||...+.++..|++ ..+|+++.||||+|||||||++||+++||+++++|++
T Consensus 463 VVqgDLseLw~iDL~gkviAAVedc~~rl~~~~~yl~------~~~F~~~~CyFNSGVLLINL~~WRk~nITe~~~~~~~ 536 (629)
T PLN02769 463 VVQRDLSFLWNLDMGGKVNGAVQFCGVRLGQLKNYLG------DTNFDTNSCAWMSGLNVIDLDKWRELDVTETYLKLLQ 536 (629)
T ss_pred EecCcHHHHhcCCCCCCeEEEehhhhhhhhhhhhhhc------ccCCCccccccccCeeEeeHHHHHHhCHHHHHHHHHH
Confidence 9999999999999999999999999866666555543 2378889999999999999999999999999999998
Q ss_pred Hc-C--cceEEe
Q 007412 592 MV-G--RILYLF 600 (604)
Q Consensus 592 ~n-d--r~Lw~~ 600 (604)
.+ . ..+|+.
T Consensus 537 ~~~~~~~~~~~~ 548 (629)
T PLN02769 537 KFSKDGEESLRA 548 (629)
T ss_pred Hhhhcccccccc
Confidence 86 4 456654
No 4
>PLN02742 Probable galacturonosyltransferase
Probab=100.00 E-value=5.4e-110 Score=899.99 Aligned_cols=383 Identities=45% Similarity=0.818 Sum_probs=365.8
Q ss_pred ccCCCCchhHHHHHHhhHHHHHhhhhhhccCCCchHHHHHHHHHHHHHHHhcccccCcCC--CCCHHHHHHHHHHHHHHh
Q 007412 215 ENENDNSDSTVRLMRDQMIMARVYLSIAKMKNKPDLQQELQSRLKESQRALGDTAADADL--HHSVPEKIKLMGQVLSKA 292 (604)
Q Consensus 215 ~~~~~~~d~~~r~l~dQl~~AkaY~~iak~~~~~~l~~eL~~~i~e~~r~l~~a~~d~~l--~~~~~~~~~~m~~~i~~a 292 (604)
-+|..++|++||+|||||||||||++|||++||++|+|||+++|||+||+||+|++|+++ |+++.++|++|+++|++|
T Consensus 66 ~~~~~~~~~~~~~l~dql~~Ak~y~~ia~~~~~~~l~~el~~~i~e~~~~l~~a~~d~~~~~~~~~~~~~~~m~~~i~~a 145 (534)
T PLN02742 66 TEEMLSATSFSRQLADQITLAKAYVVIAKEHNNLQLAWELSAQIRNCQLLLSKAATRGEPITVEEAEPIIRDLAALIYQA 145 (534)
T ss_pred hhhhcChHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHH
Confidence 346789999999999999999999999999999999999999999999999999999986 489999999999999999
Q ss_pred hccccChHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhccCCCCcccchhhHhhHHHhcCCccc---CCCCCCCCCCCC
Q 007412 293 REQLYDCKLVTGKLRAMLQTADEQVRSLKKQSTFLSQLAAKTIPNGIHCMSMRLTIEYYLLPPEK---RKFPGSENLENP 369 (604)
Q Consensus 293 k~~~~d~~~~~~kLra~l~~~ee~~~~~~~q~~~~~~laa~~~Pk~lHCL~mrLt~ey~~~~~~~---~~~p~~~~l~dp 369 (604)
|+++|||+++++|||+|++++||++++|++|++||+||||+|+|||||||+||||+|||++++++ .++|+.++|+||
T Consensus 146 k~~~~d~~~~~~klr~~l~~~e~~~~~~~~q~~~~~~laa~t~PK~lHCL~mrLt~ey~~~~~~~~~~~~~~~~~~l~d~ 225 (534)
T PLN02742 146 QDLHYDSATTIMTLKAHIQALEERANAATVQSTKFGQLAAEALPKSLYCLGVRLTTEWFKNPKLQRKAEEKRNSPRLVDN 225 (534)
T ss_pred HhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccchHhHHHHHhCchhhhccccccccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999885 446778899999
Q ss_pred CceeEEEEeCCccccccceehhhhccCCCCceEEEEEeCCCchhhhhhhhhcCCCCCcceeeecccchhhcccccchhhh
Q 007412 370 NLYHYALFSDNVLAASVVVNSTIMNAKDSSKHVFHLVTDKLNFGAMNMWFLLNPPGKAAIHVENVDEFKWLNSSYCPVLR 449 (604)
Q Consensus 370 ~liHIal~SDNvLaasVvInSil~Nsk~P~~ivFHIVTD~in~~amk~WF~~N~~~~A~VeV~nie~f~wL~~sy~Pvlk 449 (604)
+++|||+||||++|++||||||+.|+++|+++|||||||+++++||++||..|++++++|+|.++++|+|++.+|+||++
T Consensus 226 ~l~Hy~ifSdNvlAasvvvnStv~nsk~P~~~VFHiVTD~~n~~aM~~WF~~n~~~~a~v~V~n~e~f~wl~~~~~pvl~ 305 (534)
T PLN02742 226 NLYHFCVFSDNILATSVVVNSTVSNAKHPDQLVFHLVTDEVNYGAMQAWFAMNDFKGVTVEVQKIEEFSWLNASYVPVLK 305 (534)
T ss_pred CcceEEEEeccchhhhhhhhhhHhhhcCCCcEEEEEeechhhHHHHHHHHhhCCCCccEEEEEEeccccccccccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCcEEEEecCCCCCccccCcccccCCCCCCcchhhhHHhhhhhhcCCCCeEEEEecceeEecCcHHHHhcCCCCCe
Q 007412 450 QLESASMKEYYFKADHPTTLSSGASNLKYRNPKYLSMLNHLRFYLPQVYPKLNKILFLDDDIVVQKDLTRLWSVDLQGKV 529 (604)
Q Consensus 450 qles~~~~~y~F~~~~~~~l~~~~~~~~~rnp~yiS~~~y~Rf~LPeLLP~ldKVLYLD~DVIVqgDLseLw~iDL~gkv 529 (604)
|+++..++.|+|..+.. ++....++++|+|+|+++|+|||||++||+++||||||+|+||++||++||++||+|++
T Consensus 306 ql~~~~~~~~yf~~~~~----~~~~~~k~r~p~y~s~~~y~R~~lP~llp~l~KvlYLD~DvVV~~DL~eL~~~DL~~~v 381 (534)
T PLN02742 306 QLQDSDTQSYYFSGSQD----DGKTEIKFRNPKYLSMLNHLRFYIPEIYPALEKVVFLDDDVVVQKDLTPLFSIDLHGNV 381 (534)
T ss_pred Hhhhhhhhhhhcccccc----cccccccccCcccccHHHHHHHHHHHHhhccCeEEEEeCCEEecCChHHHhcCCCCCCE
Confidence 99999999999987542 22344578899999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCchhhhhccccccCCccccccCCCCCCccccceeeeehHHHHhhChHHHHHHHHHHc-CcceEEec
Q 007412 530 NGAVETCGESFHRFDKYLNFTNPHIARSFDPNACGWAYGMNMFDLKEWKKKDITGIYHKWQNMV-GRILYLFR 601 (604)
Q Consensus 530 iAAVeDc~~~f~r~~~yLnfS~P~I~~~fd~~~cYFNSGVLLiDL~kWRe~nIt~k~~~wle~n-dr~Lw~~~ 601 (604)
+|||+||+.+|++|..|+||++|.++.+|+++.||||+|||||||++||+++||+.++.|++.| +..+|+.+
T Consensus 382 iaAVedC~~~f~ry~~yLnfS~p~i~~~f~~~aC~fNsGV~ViDL~~WRe~nITe~~~~w~e~n~~~~l~d~g 454 (534)
T PLN02742 382 NGAVETCLETFHRYHKYLNFSHPLISSHFDPDACGWAFGMNVFDLVAWRKANVTAIYHYWQEQNVDRTLWKLG 454 (534)
T ss_pred EEEeCchhhhhhhhhhhhcccchhhhccCCCCccccccCcEEEeHHHHHhhcHHHHHHHHHHhcccccccccc
Confidence 9999999989999999999999999999999999999999999999999999999999999999 99999843
No 5
>PLN02718 Probable galacturonosyltransferase
Probab=100.00 E-value=1.6e-101 Score=843.04 Aligned_cols=358 Identities=50% Similarity=0.908 Sum_probs=342.1
Q ss_pred CCCchhHHHHHHhhHHHHHhhhhhhccCCCchHHHHHHHHHHHHHHHhcccccCcCCCCCHHHHHHHHHHHHHHhhcccc
Q 007412 218 NDNSDSTVRLMRDQMIMARVYLSIAKMKNKPDLQQELQSRLKESQRALGDTAADADLHHSVPEKIKLMGQVLSKAREQLY 297 (604)
Q Consensus 218 ~~~~d~~~r~l~dQl~~AkaY~~iak~~~~~~l~~eL~~~i~e~~r~l~~a~~d~~l~~~~~~~~~~m~~~i~~ak~~~~ 297 (604)
..|+|++||+|||||||||||++|||++||++|+|||+++|||+||+||+|+.|+|||+++.++|++|+++|++||+++|
T Consensus 160 ~~~~d~~v~~~~dql~~ak~y~~~a~~~~~~~~~~el~~~i~e~~~~l~~~~~d~~lp~~~~~~~~~m~~~~~~a~~~~~ 239 (603)
T PLN02718 160 RRATDEKVKEIRDKIIQAKAYLNLAPPGSNSQLVKELRLRTKELERAVGDATKDKDLSKSALQRMKSMEVTLYKASRVFP 239 (603)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHHHHHHHhccc
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhccCCCCcccchhhHhhHHHhcCCcccCCCCCCCCCCCCCceeEEEE
Q 007412 298 DCKLVTGKLRAMLQTADEQVRSLKKQSTFLSQLAAKTIPNGIHCMSMRLTIEYYLLPPEKRKFPGSENLENPNLYHYALF 377 (604)
Q Consensus 298 d~~~~~~kLra~l~~~ee~~~~~~~q~~~~~~laa~~~Pk~lHCL~mrLt~ey~~~~~~~~~~p~~~~l~dp~liHIal~ 377 (604)
||+++++|||||++++||++++||+|++||+||||+|+|||+|||+||||+|||+++++++++|++++|+||+++|||+|
T Consensus 240 d~~~~~~klr~~~~~~e~~~~~~~~q~~~~~~laa~~~PK~lhCL~~rLt~ey~~~~~~~~~~~~~~~l~d~~~~Hia~~ 319 (603)
T PLN02718 240 NCPAIATKLRAMTYNTEEQVRAQKNQAAYLMQLAARTTPKGLHCLSMRLTAEYFALDPEKRQLPNQQRYNDPDLYHYVVF 319 (603)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccchhhHHHHhhCChhhccCCChhhccCCcceeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCccccccceehhhhccCCCCceEEEEEeCCCchhhhhhhhhcCCCCCcceeeecccchhhcccccchhhhhhccCCcE
Q 007412 378 SDNVLAASVVVNSTIMNAKDSSKHVFHLVTDKLNFGAMNMWFLLNPPGKAAIHVENVDEFKWLNSSYCPVLRQLESASMK 457 (604)
Q Consensus 378 SDNvLaasVvInSil~Nsk~P~~ivFHIVTD~in~~amk~WF~~N~~~~A~VeV~nie~f~wL~~sy~Pvlkqles~~~~ 457 (604)
+|||++++|+|+|++.|+++|++++||||||++++++|+.||..+++.+++|+|.++++|.|++.+|.++++++++
T Consensus 320 sDNvlaasVvInSil~Ns~np~~ivFHVvTD~is~~~mk~wf~l~~~~~a~I~V~~Iddf~~lp~~~~~~lk~l~s---- 395 (603)
T PLN02718 320 SDNVLACSVVVNSTISSSKEPEKIVFHVVTDSLNYPAISMWFLLNPPGKATIQILNIDDMNVLPADYNSLLMKQNS---- 395 (603)
T ss_pred cCCceeEEEEhhhhhhccCCCCcEEEEEEeCCCCHHHHHHHHHhCCCCCcEEEEEecchhccccccchhhhhhccc----
Confidence 9999999999999999999989999999999999999999999999889999999999999999988887765532
Q ss_pred EEEecCCCCCccccCcccccCCCCCCcchhhhHHhhhhhhcCCCCeEEEEecceeEecCcHHHHhcCCCCCeEEEEeccC
Q 007412 458 EYYFKADHPTTLSSGASNLKYRNPKYLSMLNHLRFYLPQVYPKLNKILFLDDDIVVQKDLTRLWSVDLQGKVNGAVETCG 537 (604)
Q Consensus 458 ~y~F~~~~~~~l~~~~~~~~~rnp~yiS~~~y~Rf~LPeLLP~ldKVLYLD~DVIVqgDLseLw~iDL~gkviAAVeDc~ 537 (604)
.+++|+|+++|+|||||++||+++||||||+|+||++||++||++||+|+++|||+||.
T Consensus 396 ---------------------~~~~~~S~~~y~Rl~ipellp~l~KvLYLD~DvVV~~DL~eL~~iDl~~~v~aaVedC~ 454 (603)
T PLN02718 396 ---------------------HDPRYISALNHARFYLPDIFPGLNKIVLFDHDVVVQRDLSRLWSLDMKGKVVGAVETCL 454 (603)
T ss_pred ---------------------cccccccHHHHHHHHHHHHhcccCEEEEEECCEEecCCHHHHhcCCCCCcEEEEecccc
Confidence 24679999999999999999999999999999999999999999999999999999997
Q ss_pred c---hhhhhccccccCCccccccCCCCCCccccceeeeehHHHHhhChHHHHHHHHHHc-CcceEEe
Q 007412 538 E---SFHRFDKYLNFTNPHIARSFDPNACGWAYGMNMFDLKEWKKKDITGIYHKWQNMV-GRILYLF 600 (604)
Q Consensus 538 ~---~f~r~~~yLnfS~P~I~~~fd~~~cYFNSGVLLiDL~kWRe~nIt~k~~~wle~n-dr~Lw~~ 600 (604)
. .++++..+++|++|++.++|+++.||||+|||||||++||++++|+++++|+++| ++.+|+-
T Consensus 455 ~~~~~~~~~~~~lnfs~p~i~~~fn~~~CyfNsGVlLIDLk~WReenITe~~~~~l~~n~~~~l~dq 521 (603)
T PLN02718 455 EGEPSFRSMDTFINFSDPWVAKKFDPKACTWAFGMNLFDLEEWRRQKLTSVYHKYLQLGVKRPLWKA 521 (603)
T ss_pred ccccchhhhhhhhhccchhhhcccCCCccccccceEEEeHHHHHhcChHHHHHHHHHhccCccccCc
Confidence 6 3566777899999998889999999999999999999999999999999999999 8888764
No 6
>PLN02870 Probable galacturonosyltransferase
Probab=100.00 E-value=6e-92 Score=758.71 Aligned_cols=341 Identities=40% Similarity=0.745 Sum_probs=306.9
Q ss_pred HHHHHHHHHHHHHHHhcccccCcCCCCCHHHHHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHHhhhhHhhh
Q 007412 250 LQQELQSRLKESQRALGDTAADADLHHSVPEKIKLMGQVLSKAREQLYDCKLVTGKLRAMLQTADEQVRSLKKQSTFLSQ 329 (604)
Q Consensus 250 l~~eL~~~i~e~~r~l~~a~~d~~l~~~~~~~~~~m~~~i~~ak~~~~d~~~~~~kLra~l~~~ee~~~~~~~q~~~~~~ 329 (604)
+.+|+.+-+.| -.-+|++.|++||+++.+.|+ +||+.+|||+++++|||+|++++||+++++|+|++|++|
T Consensus 91 ~~~~~~~~l~~--~~~~~~~~d~~lp~s~~~~~~-------~~~~~~~d~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~~ 161 (533)
T PLN02870 91 LVRDFYKILNE--VNTEEIPDGLKLPDSFSQLVS-------DMKNNHYDAKTFAFVLRAMMEKFERELRESKFAELMNKH 161 (533)
T ss_pred hHHHHHHHHHH--hccccccccccCChhHHHHHH-------HHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444443 234689999999999877776 678899999999999999999999999999999999999
Q ss_pred hhccCCCCcccchhhHhhHHHhcCCcccCCCCCCC---CCCCCCceeEEEEeCCccccccceehhhhccCCCCceEEEEE
Q 007412 330 LAAKTIPNGIHCMSMRLTIEYYLLPPEKRKFPGSE---NLENPNLYHYALFSDNVLAASVVVNSTIMNAKDSSKHVFHLV 406 (604)
Q Consensus 330 laa~~~Pk~lHCL~mrLt~ey~~~~~~~~~~p~~~---~l~dp~liHIal~SDNvLaasVvInSil~Nsk~P~~ivFHIV 406 (604)
|||+|+|||||||+||||+|||+++++++++|++| +|+||+++|||+||||+||+||||||++.|+++|+++|||||
T Consensus 162 laa~t~PK~lHCL~mrLt~ey~~~~~~~~~~~~~e~~~~l~dp~~~Hy~ifSdNvLAasVvvnStv~~a~~p~~~VFHvv 241 (533)
T PLN02870 162 FAASSIPKGIHCLSLRLTDEYSSNAHARKQLPSPELLPVLSDNSYHHFVLSTDNILAASVVVSSTVQSSLKPEKIVFHVI 241 (533)
T ss_pred HHHhhcCCCccccchhhHHHHHhCchhhhcCCcccccccccCCcceeEEEEecceeEEEeeeehhhhcccCccceEEEEe
Confidence 99999999999999999999999999999999877 999999999999999999999999999999999999999999
Q ss_pred eCCCchhhhhhhhhcCCCCCcceeeecccchhhcccccchhhhhhccCCcE-EEEecCCCCCccccC------cccccCC
Q 007412 407 TDKLNFGAMNMWFLLNPPGKAAIHVENVDEFKWLNSSYCPVLRQLESASMK-EYYFKADHPTTLSSG------ASNLKYR 479 (604)
Q Consensus 407 TD~in~~amk~WF~~N~~~~A~VeV~nie~f~wL~~sy~Pvlkqles~~~~-~y~F~~~~~~~l~~~------~~~~~~r 479 (604)
||++||+||++||.+||+++|+|||+|+|+|+||+.+|+|+++|+|+.++. .|+|....+.....+ ..+++++
T Consensus 242 TD~~n~~aM~~WF~~n~~~~a~v~V~~~e~f~wl~~~~~pvl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 321 (533)
T PLN02870 242 TDKKTYAGMHSWFALNSVSPAIVEVKGVHQFDWLTRENVPVLEAVESHNGIRNYYHGNHIAGANLSETTPRTFASKLQAR 321 (533)
T ss_pred cCccccHHHHHHHhhCCCccceEEEEehhhccccccccchHHHHHhhhHHHHHHhhcccccccccccccchhhhcccccC
Confidence 999999999999999999999999999999999999999999999998874 455554443221111 2357889
Q ss_pred CCCCcchhhhHHhhhhhhcCCCCeEEEEecceeEecCcHHHHhcCCCCCeEEEEeccCch-----hhhhccccccCCccc
Q 007412 480 NPKYLSMLNHLRFYLPQVYPKLNKILFLDDDIVVQKDLTRLWSVDLQGKVNGAVETCGES-----FHRFDKYLNFTNPHI 554 (604)
Q Consensus 480 np~yiS~~~y~Rf~LPeLLP~ldKVLYLD~DVIVqgDLseLw~iDL~gkviAAVeDc~~~-----f~r~~~yLnfS~P~I 554 (604)
+|+|+|+++|+|||||++||+++||||||+||||++||++||++||+|+++|||+||... ++++..|+||++|.+
T Consensus 322 ~p~ylS~lny~Rl~LPelLP~LdKVLYLD~DVVVqgDLseLw~iDL~gkviaAVeDc~~~~~~~~~~~~~~YfNfs~p~i 401 (533)
T PLN02870 322 SPKYISLLNHLRIYLPELFPNLDKVVFLDDDVVIQRDLSPLWDIDLGGKVNGAVETCRGEDEWVMSKRFRNYFNFSHPLI 401 (533)
T ss_pred CccccCHHHHHHHHHHHHhhhcCeEEEEeCCEEecCcHHHHhhCCCCCceEEEEccccccchhhhhhhhhhhcccccchh
Confidence 999999999999999999999999999999999999999999999999999999999642 357778999999999
Q ss_pred cccCCCCCCccccceeeeehHHHHhhChHHHHHHHHHHc-Cc--ceEE
Q 007412 555 ARSFDPNACGWAYGMNMFDLKEWKKKDITGIYHKWQNMV-GR--ILYL 599 (604)
Q Consensus 555 ~~~fd~~~cYFNSGVLLiDL~kWRe~nIt~k~~~wle~n-dr--~Lw~ 599 (604)
..+|++++||||||||||||++||++++|+++++|+++| .+ .+|+
T Consensus 402 ~~~fd~~~cyfNSGVlLINL~~WRe~nITek~~~~l~~n~~~~l~l~D 449 (533)
T PLN02870 402 AKNLDPEECAWAYGMNIFDLRAWRKTNIRETYHSWLKENLKSNLTMWK 449 (533)
T ss_pred hcccCcccceeeccchhccHHHHHHcChHHHHHHHHHhhhhcCceecc
Confidence 999999999999999999999999999999999999998 55 4443
No 7
>PLN02867 Probable galacturonosyltransferase
Probab=100.00 E-value=1.1e-91 Score=758.87 Aligned_cols=335 Identities=36% Similarity=0.680 Sum_probs=310.3
Q ss_pred HHHHHHHhcccccCcCCCCCHHHHHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhccCCCC
Q 007412 258 LKESQRALGDTAADADLHHSVPEKIKLMGQVLSKAREQLYDCKLVTGKLRAMLQTADEQVRSLKKQSTFLSQLAAKTIPN 337 (604)
Q Consensus 258 i~e~~r~l~~a~~d~~l~~~~~~~~~~m~~~i~~ak~~~~d~~~~~~kLra~l~~~ee~~~~~~~q~~~~~~laa~~~Pk 337 (604)
.+|++|+|+||+.|.++|+.+.++.+.|++++.++++.+|||++++.|||||++++||+++++|+|++|++||||+|+||
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~kl~am~~~~e~~~~~~~~~~~~~~~laa~t~PK 174 (535)
T PLN02867 95 REELTRALVEAKEQDDGGRGTKGSTESFNDLVKEMTSNRQDIKAFAFRTKAMLLKMERKVQSARQRESIYWHLASHGIPK 174 (535)
T ss_pred HHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 45669999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhHhhHHHhcCCcccCCCCCCC---CCCCCCceeEEEEeCCccccccceehhhhccCCCCceEEEEEeCCCchhh
Q 007412 338 GIHCMSMRLTIEYYLLPPEKRKFPGSE---NLENPNLYHYALFSDNVLAASVVVNSTIMNAKDSSKHVFHLVTDKLNFGA 414 (604)
Q Consensus 338 ~lHCL~mrLt~ey~~~~~~~~~~p~~~---~l~dp~liHIal~SDNvLaasVvInSil~Nsk~P~~ivFHIVTD~in~~a 414 (604)
|||||+||||+|||+++++++++|+++ +|+||+++|||+||||+||+||||||++.|+++|+++|||||||++||+|
T Consensus 175 ~lHCL~mrLt~ey~~~~~~~~~~~~~~~~~~l~d~~~~Hy~ifSdNvLAasVvvnStv~~a~~p~~~VfHvvTD~~ny~a 254 (535)
T PLN02867 175 SLHCLCLKLAEEYAVNAMARSRLPPPESVSRLTDPSFHHVVLLTDNVLAASVVISSTVQNAANPEKLVFHIVTDKKTYTP 254 (535)
T ss_pred CccccchhhHHHHHhCchhhccCCChhhhhhccCCCcceEEEEecceeEEEeeeehhhhcccCccceEEEEecCccccHH
Confidence 999999999999999999999999877 89999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCCCCcceeeecccchhhcccccchhhhhhccCCcEE-----------EEecCCCCCccccCcccccCCCCCC
Q 007412 415 MNMWFLLNPPGKAAIHVENVDEFKWLNSSYCPVLRQLESASMKE-----------YYFKADHPTTLSSGASNLKYRNPKY 483 (604)
Q Consensus 415 mk~WF~~N~~~~A~VeV~nie~f~wL~~sy~Pvlkqles~~~~~-----------y~F~~~~~~~l~~~~~~~~~rnp~y 483 (604)
|++||.+||+++|+|||+++|+|+|++.+|+|+++|+|+.++.. |+|+.+ ....+++++|+|
T Consensus 255 M~~WF~~n~~~~a~v~V~~~~~f~wl~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~pky 327 (535)
T PLN02867 255 MHAWFAINSIKSAVVEVKGLHQYDWSQEVNVGVKEMLEIHRLIWSHYYQNLKESDFQFEGT-------HKRSLEALSPSC 327 (535)
T ss_pred HHHHHhhCCCccceEEEEeehhccccccccccHHHHHHHhhhhhhhhhccccccccccccc-------cccchhhcChhh
Confidence 99999999999999999999999999999999999999876542 122221 123467899999
Q ss_pred cchhhhHHhhhhhhcCCCCeEEEEecceeEecCcHHHHhcCCCCCeEEEEecc--Cch---hhhhccccccCCccccccC
Q 007412 484 LSMLNHLRFYLPQVYPKLNKILFLDDDIVVQKDLTRLWSVDLQGKVNGAVETC--GES---FHRFDKYLNFTNPHIARSF 558 (604)
Q Consensus 484 iS~~~y~Rf~LPeLLP~ldKVLYLD~DVIVqgDLseLw~iDL~gkviAAVeDc--~~~---f~r~~~yLnfS~P~I~~~f 558 (604)
+|+++|+|||||++||+++||||||+||||++||++||++||+|+++|||.|+ ... .+++..|+||++|.+..+|
T Consensus 328 lS~lnYlRflIPeLLP~LdKVLYLD~DVVVqgDLseLwdiDL~gkviaAV~D~~c~~~~~~~~~~~~YlNfsnp~i~~~~ 407 (535)
T PLN02867 328 LSLLNHLRIYIPELFPDLNKIVFLDDDVVVQHDLSSLWELDLNGKVVGAVVDSWCGDNCCPGRKYKDYLNFSHPLISSNL 407 (535)
T ss_pred hhHHHHHHHHHHHHhhccCeEEEecCCEEEcCchHHHHhCcCCCCeEEEEeccccccccccchhhhhhccccchhhhccC
Confidence 99999999999999999999999999999999999999999999999999874 322 2457789999999988899
Q ss_pred CCCCCccccceeeeehHHHHhhChHHHHHHHHHHc-Cc--ceEE
Q 007412 559 DPNACGWAYGMNMFDLKEWKKKDITGIYHKWQNMV-GR--ILYL 599 (604)
Q Consensus 559 d~~~cYFNSGVLLiDL~kWRe~nIt~k~~~wle~n-dr--~Lw~ 599 (604)
+++.||||||||||||++||++++|+++++|+++| ++ .+|+
T Consensus 408 ~p~~cYFNSGVmLINL~~WRe~nITek~~~~Le~n~~~~~~l~d 451 (535)
T PLN02867 408 DQERCAWLYGMNVFDLKAWRRTNITEAYHKWLKLSLNSGLQLWQ 451 (535)
T ss_pred CCCCcceecceeeeeHHHHHHhcHHHHHHHHHHhchhccccccc
Confidence 99999999999999999999999999999999998 53 4554
No 8
>PLN02659 Probable galacturonosyltransferase
Probab=100.00 E-value=1.6e-89 Score=740.09 Aligned_cols=327 Identities=38% Similarity=0.735 Sum_probs=297.7
Q ss_pred ccccCcCCCCCHHHHHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhccCCCCcccchhhHh
Q 007412 267 DTAADADLHHSVPEKIKLMGQVLSKAREQLYDCKLVTGKLRAMLQTADEQVRSLKKQSTFLSQLAAKTIPNGIHCMSMRL 346 (604)
Q Consensus 267 ~a~~d~~l~~~~~~~~~~m~~~i~~ak~~~~d~~~~~~kLra~l~~~ee~~~~~~~q~~~~~~laa~~~Pk~lHCL~mrL 346 (604)
|...|.++|.+ +++++.+++..+|||.++++|||||++++||+++++|+|+.++.||||+|+|||+|||+|||
T Consensus 107 e~~~~~~~~~~-------~~~~~~~~~~~~~d~~~~~~klr~~l~~~E~~~~~~k~~~~~~~~laa~t~PK~lHCL~mrL 179 (534)
T PLN02659 107 ELKGRSDIPQT-------LEEFMDEVKNSRSDARAFALKLREMVTLLEQRTRTAKIQEYLYRHVASSSIPKQLHCLALRL 179 (534)
T ss_pred ccCCccccchH-------HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCccccchhh
Confidence 55566678875 56677778889999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhcCCcccCCCCCCC---CCCCCCceeEEEEeCCccccccceehhhhccCCCCceEEEEEeCCCchhhhhhhhhcCC
Q 007412 347 TIEYYLLPPEKRKFPGSE---NLENPNLYHYALFSDNVLAASVVVNSTIMNAKDSSKHVFHLVTDKLNFGAMNMWFLLNP 423 (604)
Q Consensus 347 t~ey~~~~~~~~~~p~~~---~l~dp~liHIal~SDNvLaasVvInSil~Nsk~P~~ivFHIVTD~in~~amk~WF~~N~ 423 (604)
|+|||+++++++++|++| +|+||+++|||+||||+||+||||||++.|+++|+++|||||||++||+||++||.+|+
T Consensus 180 t~ey~~~~~~~~~~~~~~~~~~l~d~~l~Hy~ifSdNvLAasVVvnStv~~a~~p~~~VFHivTD~~ny~aM~~WF~~n~ 259 (534)
T PLN02659 180 ANEHSTNAAARLQLPLAELVPALVDNSYFHFVLASDNILAASVVANSLVQNALRPHKFVLHIITDRKTYSPMQAWFSLHP 259 (534)
T ss_pred HHHHHhCchhhhccCCcccccccCCCCcceEEEEecceeEEEeeeehhhhcccCccceEEEEecCccccHHHHHHHhhCC
Confidence 999999999999999877 79999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeeecccchhhcccccchhhhhhccCCcEEEEecCCCCCcccc-------CcccccCCCCCCcchhhhHHhhhhh
Q 007412 424 PGKAAIHVENVDEFKWLNSSYCPVLRQLESASMKEYYFKADHPTTLSS-------GASNLKYRNPKYLSMLNHLRFYLPQ 496 (604)
Q Consensus 424 ~~~A~VeV~nie~f~wL~~sy~Pvlkqles~~~~~y~F~~~~~~~l~~-------~~~~~~~rnp~yiS~~~y~Rf~LPe 496 (604)
+++|+|||+|+|+|+||+++|+||++|+++..+..++|..+....... ...++++++|+|+|+++|+|||||+
T Consensus 260 ~~~a~v~V~~~e~f~wl~~~~~pvl~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~ylS~~nY~RL~IPe 339 (534)
T PLN02659 260 LSPAIIEVKALHHFDWFAKGKVPVLEAMEKDQRVRSQFRGGSSAIVANNTEKPHVIAAKLQALSPKYNSVMNHIRIHLPE 339 (534)
T ss_pred CccceEEEEeehhcccccccccHHHHHHhhhhhhhhhhcccccccccccccCccccccccccCCccceeHHHHHHHHHHH
Confidence 999999999999999999999999999999888878887544211111 1245677999999999999999999
Q ss_pred hcCCCCeEEEEecceeEecCcHHHHhcCCCCCeEEEEeccCch--h---hhhccccccCCccccccCCCCCCccccceee
Q 007412 497 VYPKLNKILFLDDDIVVQKDLTRLWSVDLQGKVNGAVETCGES--F---HRFDKYLNFTNPHIARSFDPNACGWAYGMNM 571 (604)
Q Consensus 497 LLP~ldKVLYLD~DVIVqgDLseLw~iDL~gkviAAVeDc~~~--f---~r~~~yLnfS~P~I~~~fd~~~cYFNSGVLL 571 (604)
+||+++||||||+||||++||++||++||+|+++|||+||... + +++..|++|++|.+.+.|+++.||||+||||
T Consensus 340 LLP~LdKVLYLD~DVVVqgDLseLw~iDL~gkv~AAVeDc~~~d~~~~~~~~~~yL~~s~p~i~~yFn~~~cYfNsGVlL 419 (534)
T PLN02659 340 LFPSLNKVVFLDDDIVVQTDLSPLWDIDMNGKVNGAVETCRGEDKFVMSKKLKSYLNFSHPLIAKNFDPNECAWAYGMNI 419 (534)
T ss_pred HhhhcCeEEEeeCCEEEcCchHHHHhCCCCCcEEEEeeccccccchhhhHHHHHhhcccchhhhhccCccccceecceeE
Confidence 9999999999999999999999999999999999999999632 2 6778889999999988999999999999999
Q ss_pred eehHHHHhhChHHHHHHHHHHc-CcceEEe
Q 007412 572 FDLKEWKKKDITGIYHKWQNMV-GRILYLF 600 (604)
Q Consensus 572 iDL~kWRe~nIt~k~~~wle~n-dr~Lw~~ 600 (604)
|||++||++++|+++++|+++| +..+..|
T Consensus 420 INLk~WRe~nITek~l~~l~~n~~~~l~l~ 449 (534)
T PLN02659 420 FDLEAWRKTNISSTYHHWLEENLKSDLSLW 449 (534)
T ss_pred eeHHHHHhcChHHHHHHHHHhccccccccc
Confidence 9999999999999999999998 5444433
No 9
>PLN02523 galacturonosyltransferase
Probab=100.00 E-value=8.1e-88 Score=728.78 Aligned_cols=327 Identities=51% Similarity=0.925 Sum_probs=308.3
Q ss_pred CCCCCHHHHHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhccCCCCcccchhhHhhHHHhc
Q 007412 273 DLHHSVPEKIKLMGQVLSKAREQLYDCKLVTGKLRAMLQTADEQVRSLKKQSTFLSQLAAKTIPNGIHCMSMRLTIEYYL 352 (604)
Q Consensus 273 ~l~~~~~~~~~~m~~~i~~ak~~~~d~~~~~~kLra~l~~~ee~~~~~~~q~~~~~~laa~~~Pk~lHCL~mrLt~ey~~ 352 (604)
+||+++.++||.|+++|++||+ .|||+++++|||+|++++||+++++|+|++|++||||+|+|||||||+||||+|||+
T Consensus 149 ~~~~~~~~~~k~~~~~~~~a~~-~~d~~~~~~kl~~~~~~~e~~~~~~~~q~~~~~~laa~t~PK~lHCL~mrLt~ey~~ 227 (559)
T PLN02523 149 QFEKEVKERVKVARQMIAESKE-SFDNQLKIQKLKDTIFAVNEQLTKAKKNGAFASLIAAKSIPKSLHCLAMRLMEERIA 227 (559)
T ss_pred hcchhHHHHHHHHHHHHHHHHh-hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCccchhhHhHHHHHh
Confidence 5899999999999999999997 999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCC--CCCCCCCCCCCceeEEEEeCCccccccceehhhhccCCCCceEEEEEeCCCchhhhhhhhhcCCCCCccee
Q 007412 353 LPPEKRK--FPGSENLENPNLYHYALFSDNVLAASVVVNSTIMNAKDSSKHVFHLVTDKLNFGAMNMWFLLNPPGKAAIH 430 (604)
Q Consensus 353 ~~~~~~~--~p~~~~l~dp~liHIal~SDNvLaasVvInSil~Nsk~P~~ivFHIVTD~in~~amk~WF~~N~~~~A~Ve 430 (604)
+++.+.+ .|++++++||+++|||+||||+++++|+|+||+.|+++|++++||||||++|+++|++||.+|++++++|+
T Consensus 228 ~~~~~~~~~~~~~~~l~dp~l~Hy~ifSdNvlAAsVvInStv~Ns~~p~~~VFHIVTD~ln~~amk~Wf~~n~~~~a~I~ 307 (559)
T PLN02523 228 HPEKYKDEGKPPPPELEDPSLYHYAIFSDNVIAASVVVNSAVKNAKEPWKHVFHVVTDRMNLAAMKVMFKMRDLNGAHVE 307 (559)
T ss_pred ChHhhhccCCCcchhccCCCcceEEEecCcchhhhhhHHHHHHccCCCcceEEEEEeCCCCHHHHHHHHhhCCCCCcEEE
Confidence 9887544 55668999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccchhhcccccchhhhhhccCCcEEEEecCCCCCccccCcccccCCCCCCcchhhhHHhhhhhhcCCCCeEEEEecc
Q 007412 431 VENVDEFKWLNSSYCPVLRQLESASMKEYYFKADHPTTLSSGASNLKYRNPKYLSMLNHLRFYLPQVYPKLNKILFLDDD 510 (604)
Q Consensus 431 V~nie~f~wL~~sy~Pvlkqles~~~~~y~F~~~~~~~l~~~~~~~~~rnp~yiS~~~y~Rf~LPeLLP~ldKVLYLD~D 510 (604)
|.++|+|+|++.+|+|+++|+++.+++.|+|..+..+.. ....+.++++|+|+|+++|+|||||++||+++||||||+|
T Consensus 308 V~~Iedf~~ln~~~~pvlk~l~s~~~~~~~f~~~~~~~~-~~~~~~k~~~p~ylS~~ny~Rf~IPeLLP~ldKVLYLD~D 386 (559)
T PLN02523 308 VKAVEDYKFLNSSYVPVLRQLESANLQKFYFENKLENAT-KDSSNMKFRNPKYLSMLNHLRFYLPEMYPKLHRILFLDDD 386 (559)
T ss_pred EEEeehhhhcccccchHHHhhhhhhhhhhhccccccccc-cccccccccCcchhhHHHHHHHHHHHHhcccCeEEEEeCC
Confidence 999999999999999999999999999999987543321 2345678899999999999999999999999999999999
Q ss_pred eeEecCcHHHHhcCCCCCeEEEEeccCchhhhhccccccCCccccccCCCCCCccccceeeeehHHHHhhChHHHHHHHH
Q 007412 511 IVVQKDLTRLWSVDLQGKVNGAVETCGESFHRFDKYLNFTNPHIARSFDPNACGWAYGMNMFDLKEWKKKDITGIYHKWQ 590 (604)
Q Consensus 511 VIVqgDLseLw~iDL~gkviAAVeDc~~~f~r~~~yLnfS~P~I~~~fd~~~cYFNSGVLLiDL~kWRe~nIt~k~~~wl 590 (604)
|||++||++||++||+|+++|||+||...+++|..+++|++|.++..|++++||||+|||||||++||+++||++++.|+
T Consensus 387 VVVq~DLseLw~iDL~gkv~aAVeDc~~~~~r~~~~ln~s~p~i~~yFNs~aC~wnsGVmlINL~~WRe~nITek~~~w~ 466 (559)
T PLN02523 387 VVVQKDLTGLWKIDMDGKVNGAVETCFGSFHRYAQYLNFSHPLIKEKFNPKACAWAYGMNIFDLDAWRREKCTEQYHYWQ 466 (559)
T ss_pred EEecCCHHHHHhCcCCCceEEEehhhhhHHHHHHHhhcccchhhhhCcCCCcccccCCcEEEeHHHHHHhchHHHHHHHH
Confidence 99999999999999999999999999877889999999999999889999999999999999999999999999999999
Q ss_pred HHc-CcceEEec
Q 007412 591 NMV-GRILYLFR 601 (604)
Q Consensus 591 e~n-dr~Lw~~~ 601 (604)
+.| +..+|+-+
T Consensus 467 ~ln~~~~l~Dqd 478 (559)
T PLN02523 467 NLNENRTLWKLG 478 (559)
T ss_pred Hhcccccccccc
Confidence 999 88888754
No 10
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=100.00 E-value=1.3e-40 Score=336.78 Aligned_cols=184 Identities=52% Similarity=0.901 Sum_probs=167.1
Q ss_pred eeEEEEeCCccccccceehhhhccCCCCceEEEEEeCCCchhhhhhhhhcCCCCCcceeeecccchhhcccccchhhhhh
Q 007412 372 YHYALFSDNVLAASVVVNSTIMNAKDSSKHVFHLVTDKLNFGAMNMWFLLNPPGKAAIHVENVDEFKWLNSSYCPVLRQL 451 (604)
Q Consensus 372 iHIal~SDNvLaasVvInSil~Nsk~P~~ivFHIVTD~in~~amk~WF~~N~~~~A~VeV~nie~f~wL~~sy~Pvlkql 451 (604)
+|||+++||+++++|+++|++.||++|.+++|||+||++++.+|+.||..++..++.|++.+++++.|......++++|+
T Consensus 1 ~hiv~~~Dn~l~~~v~i~S~l~nn~~~~~~~fhvvtd~~s~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~ 80 (257)
T cd06429 1 IHVVIFSDNRLAAAVVINSSISNNKDPSNLVFHIVTDNQNYGAMRSWFDLNPLKIATVKVLNFDDFKLLGKVKVDSLMQL 80 (257)
T ss_pred CCEEEEecchhHHHHHHHHHHHhCCCCCceEEEEecCccCHHHHHHHHHhcCCCCceEEEEEeCcHHhhcccccchhhhh
Confidence 69999999999999999999999999999999999999999999999999988899999999999988877777788888
Q ss_pred ccCCcEEEEecCCCCCccccCcccccCCCCCCcchhhhHHhhhhhhcCCCCeEEEEecceeEecCcHHHHhcCCCCCeEE
Q 007412 452 ESASMKEYYFKADHPTTLSSGASNLKYRNPKYLSMLNHLRFYLPQVYPKLNKILFLDDDIVVQKDLTRLWSVDLQGKVNG 531 (604)
Q Consensus 452 es~~~~~y~F~~~~~~~l~~~~~~~~~rnp~yiS~~~y~Rf~LPeLLP~ldKVLYLD~DVIVqgDLseLw~iDL~gkviA 531 (604)
++.. . ...+++++++++|.++|+||+||++||+++||||||+|+||++||++||++||+|+++|
T Consensus 81 ~~~~------~----------~~~~~~~~~~~~s~~~y~Rl~ip~llp~~~kvlYLD~Dviv~~dl~eL~~~dl~~~~~a 144 (257)
T cd06429 81 ESEA------D----------TSNLKQRKPEYISLLNFARFYLPELFPKLEKVIYLDDDVVVQKDLTELWNTDLGGGVAG 144 (257)
T ss_pred hccc------c----------ccccccCCccccCHHHHHHHHHHHHhhhhCeEEEEeCCEEEeCCHHHHhhCCCCCCEEE
Confidence 7644 1 12345678899999999999999999999999999999999999999999999999999
Q ss_pred EEeccCchhhhhccccccCCccccccCCCCCCccccceeeeehHHHHhhChHHHHHHHHHHc-Cc--ceEE
Q 007412 532 AVETCGESFHRFDKYLNFTNPHIARSFDPNACGWAYGMNMFDLKEWKKKDITGIYHKWQNMV-GR--ILYL 599 (604)
Q Consensus 532 AVeDc~~~f~r~~~yLnfS~P~I~~~fd~~~cYFNSGVLLiDL~kWRe~nIt~k~~~wle~n-dr--~Lw~ 599 (604)
||+| |||||||||||++||++++++++++|++.+ ++ .+|.
T Consensus 145 av~d----------------------------yfNsGV~linl~~wr~~~i~~~~~~~~~~~~~~~~~~~~ 187 (257)
T cd06429 145 AVET----------------------------SWNPGVNVVNLTEWRRQNVTETYEKWMELNQEEEVTLWK 187 (257)
T ss_pred EEhh----------------------------hcccceEEEeHHHHHhccHHHHHHHHHHHhhhcccchhh
Confidence 9988 699999999999999999999999999988 54 3444
No 11
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional
Probab=99.96 E-value=6.8e-30 Score=266.93 Aligned_cols=180 Identities=21% Similarity=0.314 Sum_probs=128.9
Q ss_pred CCceeEEEEeC-Cccc-cccceehhhhccCCCCceEEEEEeCCCchhhhhhhhhcCCCCCcceeeecccchhhcccccch
Q 007412 369 PNLYHYALFSD-NVLA-ASVVVNSTIMNAKDSSKHVFHLVTDKLNFGAMNMWFLLNPPGKAAIHVENVDEFKWLNSSYCP 446 (604)
Q Consensus 369 p~liHIal~SD-NvLa-asVvInSil~Nsk~P~~ivFHIVTD~in~~amk~WF~~N~~~~A~VeV~nie~f~wL~~sy~P 446 (604)
+..+|||+++| ||+. ++|+|.|++.|+++ ..+.|||++++++.. |+ +.+.-+..
T Consensus 23 ~~~i~Iv~~~D~ny~~~~~vsi~Sil~nn~~-~~~~f~Il~~~is~e----~~---------------~~l~~l~~---- 78 (334)
T PRK15171 23 KNSLDIAYGIDKNFLFGCGVSIASVLLNNPD-KSLVFHVFTDYISDA----DK---------------QRFSALAK---- 78 (334)
T ss_pred CCceeEEEECcHhhHHHHHHHHHHHHHhCCC-CCEEEEEEeCCCCHH----HH---------------HHHHHHHH----
Confidence 47899999999 7865 56999999999876 479999999998853 21 11110000
Q ss_pred hhhhhccCCcEEEEecCCCCCccccCcccccCCCCCCcchhhhHHhhhhhhcC-CCCeEEEEecceeEecCcHHHHhcCC
Q 007412 447 VLRQLESASMKEYYFKADHPTTLSSGASNLKYRNPKYLSMLNHLRFYLPQVYP-KLNKILFLDDDIVVQKDLTRLWSVDL 525 (604)
Q Consensus 447 vlkqles~~~~~y~F~~~~~~~l~~~~~~~~~rnp~yiS~~~y~Rf~LPeLLP-~ldKVLYLD~DVIVqgDLseLw~iDL 525 (604)
+ .+.++.++.++.+.. ..++...++|.++|+||+||++|| +++||||||+|+||++||++||++||
T Consensus 79 ---~-~~~~i~~~~id~~~~---------~~~~~~~~~s~atY~Rl~ip~llp~~~dkvLYLD~Diiv~~dl~~L~~~dl 145 (334)
T PRK15171 79 ---Q-YNTRINIYLINCERL---------KSLPSTKNWTYATYFRFIIADYFIDKTDKVLYLDADIACKGSIKELIDLDF 145 (334)
T ss_pred ---h-cCCeEEEEEeCHHHH---------hCCcccCcCCHHHHHHHHHHHhhhhhcCEEEEeeCCEEecCCHHHHHhccC
Confidence 0 122344554432211 123345689999999999999999 59999999999999999999999999
Q ss_pred CCCeEEEE-eccCch-hhhhccccccCCccccccCCCCCCccccceeeeehHHHHhhChHHHHHHHHHHc
Q 007412 526 QGKVNGAV-ETCGES-FHRFDKYLNFTNPHIARSFDPNACGWAYGMNMFDLKEWKKKDITGIYHKWQNMV 593 (604)
Q Consensus 526 ~gkviAAV-eDc~~~-f~r~~~yLnfS~P~I~~~fd~~~cYFNSGVLLiDL~kWRe~nIt~k~~~wle~n 593 (604)
+|..+||| .|+... +......+. .| ++ ..+|||||||||||++||++++++++++++..+
T Consensus 146 ~~~~~aav~~d~~~~~~~~~~~~l~--~~----~~--~~~YFNsGVlliNl~~wRe~~i~~k~~~~l~~~ 207 (334)
T PRK15171 146 AENEIAAVVAEGDAEWWSKRAQSLQ--TP----GL--ASGYFNSGFLLINIPAWAQENISAKAIEMLADP 207 (334)
T ss_pred CCCeEEEEEeccchhHHHHHHHhcC--Cc----cc--cccceecceEEEcHHHHHHhhHHHHHHHHHhcc
Confidence 96656655 455322 111111121 11 11 246999999999999999999999999999864
No 12
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=99.95 E-value=1.6e-27 Score=236.52 Aligned_cols=177 Identities=19% Similarity=0.264 Sum_probs=124.2
Q ss_pred eeEEEEe-C-Cccc-cccceehhhhccCCCCceEEEEEeCCCchhhhhhhhhcCCCCCcceeeecccchhhcccccchhh
Q 007412 372 YHYALFS-D-NVLA-ASVVVNSTIMNAKDSSKHVFHLVTDKLNFGAMNMWFLLNPPGKAAIHVENVDEFKWLNSSYCPVL 448 (604)
Q Consensus 372 iHIal~S-D-NvLa-asVvInSil~Nsk~P~~ivFHIVTD~in~~amk~WF~~N~~~~A~VeV~nie~f~wL~~sy~Pvl 448 (604)
|||++++ | ||+. ++|+|.|++.|+++ .++|||++++++....+.+-. +
T Consensus 1 ~~i~~~a~d~~y~~~~~v~i~Sl~~~~~~--~~~~~il~~~is~~~~~~L~~---------------------------~ 51 (246)
T cd00505 1 IAIVIVATGDEYLRGAIVLMKSVLRHRTK--PLRFHVLTNPLSDTFKAALDN---------------------------L 51 (246)
T ss_pred CeEEEEecCcchhHHHHHHHHHHHHhCCC--CeEEEEEEccccHHHHHHHHH---------------------------H
Confidence 5776554 4 6765 56999999999986 699999999987532111110 0
Q ss_pred hhhccCCcEEEEecCCCCCccccCcccccCCC-CCCcchhhhHHhhhhhhcCCCCeEEEEecceeEecCcHHHHhcCCCC
Q 007412 449 RQLESASMKEYYFKADHPTTLSSGASNLKYRN-PKYLSMLNHLRFYLPQVYPKLNKILFLDDDIVVQKDLTRLWSVDLQG 527 (604)
Q Consensus 449 kqles~~~~~y~F~~~~~~~l~~~~~~~~~rn-p~yiS~~~y~Rf~LPeLLP~ldKVLYLD~DVIVqgDLseLw~iDL~g 527 (604)
.+.....+.++.++.... ..+.. .++++..+|+||+||++||+++||||||+|+||++||++||++|++|
T Consensus 52 ~~~~~~~i~~~~~~~~~~---------~~~~~~~~~~~~~~y~RL~i~~llp~~~kvlYLD~D~iv~~di~~L~~~~l~~ 122 (246)
T cd00505 52 RKLYNFNYELIPVDILDS---------VDSEHLKRPIKIVTLTKLHLPNLVPDYDKILYVDADILVLTDIDELWDTPLGG 122 (246)
T ss_pred HhccCceEEEEeccccCc---------chhhhhcCccccceeHHHHHHHHhhccCeEEEEcCCeeeccCHHHHhhccCCC
Confidence 001112223333321110 01111 36889999999999999999999999999999999999999999999
Q ss_pred CeEEEEeccCchhhhhccccccCCccccccCCCCCCccccceeeeehHHHHhhChHHHHHHHHHHc
Q 007412 528 KVNGAVETCGESFHRFDKYLNFTNPHIARSFDPNACGWAYGMNMFDLKEWKKKDITGIYHKWQNMV 593 (604)
Q Consensus 528 kviAAVeDc~~~f~r~~~yLnfS~P~I~~~fd~~~cYFNSGVLLiDL~kWRe~nIt~k~~~wle~n 593 (604)
+++|||+||..... ..+... ..++....+||||||||||+++||++++.+++.++..++
T Consensus 123 ~~~aav~d~~~~~~--~~~~~~-----~~~~~~~~~yfNsGVmlinl~~~r~~~~~~~~~~~~~~~ 181 (246)
T cd00505 123 QELAAAPDPGDRRE--GKYYRQ-----KRSHLAGPDYFNSGVFVVNLSKERRNQLLKVALEKWLQS 181 (246)
T ss_pred CeEEEccCchhhhc--cchhhc-----ccCCCCCCCceeeeeEEEechHHHHHHHHHHHHHHHHhh
Confidence 99999999974211 000000 113344568999999999999999888888888866554
No 13
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=99.94 E-value=3.8e-27 Score=232.82 Aligned_cols=174 Identities=20% Similarity=0.272 Sum_probs=130.9
Q ss_pred eeEEEEeC-Cccc-cccceehhhhccCCCCceEEEEEeCCCchhhhh---hhhhcCCCCCcceeeecccchhhcccccch
Q 007412 372 YHYALFSD-NVLA-ASVVVNSTIMNAKDSSKHVFHLVTDKLNFGAMN---MWFLLNPPGKAAIHVENVDEFKWLNSSYCP 446 (604)
Q Consensus 372 iHIal~SD-NvLa-asVvInSil~Nsk~P~~ivFHIVTD~in~~amk---~WF~~N~~~~A~VeV~nie~f~wL~~sy~P 446 (604)
+|||+++| +|+. ++|+++|++.|+++ ..++|||++++++....+ .++..
T Consensus 1 ~~I~~~~d~~y~~~~~~~l~Sl~~~~~~-~~~~~~il~~~is~~~~~~L~~~~~~------------------------- 54 (248)
T cd04194 1 MNIVFAIDDNYAPYLAVTIKSILANNSK-RDYDFYILNDDISEENKKKLKELLKK------------------------- 54 (248)
T ss_pred CCEEEEecHhhHHHHHHHHHHHHhcCCC-CceEEEEEeCCCCHHHHHHHHHHHHh-------------------------
Confidence 69999999 7865 56999999999996 479999999987743211 11110
Q ss_pred hhhhhccCCcEEEEecCCCCCccccCcccccCC-CCCCcchhhhHHhhhhhhcCCCCeEEEEecceeEecCcHHHHhcCC
Q 007412 447 VLRQLESASMKEYYFKADHPTTLSSGASNLKYR-NPKYLSMLNHLRFYLPQVYPKLNKILFLDDDIVVQKDLTRLWSVDL 525 (604)
Q Consensus 447 vlkqles~~~~~y~F~~~~~~~l~~~~~~~~~r-np~yiS~~~y~Rf~LPeLLP~ldKVLYLD~DVIVqgDLseLw~iDL 525 (604)
....+..+.++.... .... ...+++..+|+||++|+++|+++||||||+|+||++||++||++|+
T Consensus 55 -----~~~~i~~~~i~~~~~---------~~~~~~~~~~~~~~y~rl~l~~ll~~~~rvlylD~D~lv~~di~~L~~~~~ 120 (248)
T cd04194 55 -----YNSSIEFIKIDNDDF---------KFFPATTDHISYATYYRLLIPDLLPDYDKVLYLDADIIVLGDLSELFDIDL 120 (248)
T ss_pred -----cCCeEEEEEcCHHHH---------hcCCcccccccHHHHHHHHHHHHhcccCEEEEEeCCEEecCCHHHHhcCCc
Confidence 011223333321110 0111 3568899999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeccCchhhhhccccccCCccccccCCCCCCccccceeeeehHHHHhhChHHHHHHHHHHc
Q 007412 526 QGKVNGAVETCGESFHRFDKYLNFTNPHIARSFDPNACGWAYGMNMFDLKEWKKKDITGIYHKWQNMV 593 (604)
Q Consensus 526 ~gkviAAVeDc~~~f~r~~~yLnfS~P~I~~~fd~~~cYFNSGVLLiDL~kWRe~nIt~k~~~wle~n 593 (604)
+|+++|||+||......... ...+.....+||||||||+|+++||+.++++++++|++.+
T Consensus 121 ~~~~~aa~~d~~~~~~~~~~--------~~~~~~~~~~yfNsGv~l~nl~~~r~~~~~~~~~~~~~~~ 180 (248)
T cd04194 121 GDNLLAAVRDPFIEQEKKRK--------RRLGGYDDGSYFNSGVLLINLKKWREENITEKLLELIKEY 180 (248)
T ss_pred CCCEEEEEecccHHHHHHHH--------hhcCCCcccceeeecchheeHHHHHHhhhHHHHHHHHHhC
Confidence 99999999999754321111 0113344578999999999999999999999999999988
No 14
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.93 E-value=2.5e-26 Score=239.87 Aligned_cols=181 Identities=23% Similarity=0.302 Sum_probs=133.7
Q ss_pred ceeEEEEeC-Ccc-ccccceehhhhccCCCCceEEEEEeCCCchhhhhhhhh-cCCCCCcceeeecccchhhcccccchh
Q 007412 371 LYHYALFSD-NVL-AASVVVNSTIMNAKDSSKHVFHLVTDKLNFGAMNMWFL-LNPPGKAAIHVENVDEFKWLNSSYCPV 447 (604)
Q Consensus 371 liHIal~SD-NvL-aasVvInSil~Nsk~P~~ivFHIVTD~in~~amk~WF~-~N~~~~A~VeV~nie~f~wL~~sy~Pv 447 (604)
.++||+++| ||+ +++|+|.|++.|++. -.+.|||++|+++. +|+. +|.. ++.|
T Consensus 2 ~~~Iv~a~D~nY~~~~gvsI~SiL~~n~~-~~~~fhil~~~i~~----e~~~~l~~~---------~~~f---------- 57 (325)
T COG1442 2 TIPIAFAFDKNYLIPAGVSIYSLLEHNRK-IFYKFHILVDGLNE----EDKKKLNET---------AEPF---------- 57 (325)
T ss_pred cccEEEEcccccchhHHHHHHHHHHhCcc-ccEEEEEEecCCCH----HHHHHHHHH---------HHhh----------
Confidence 478999999 785 567999999999996 37999999999985 4553 1100 0111
Q ss_pred hhhhccCCcEEEEecCCCCCccccCcccccCC-CCCCcchhhhHHhhhhhhcCCCCeEEEEecceeEecCcHHHHhcCCC
Q 007412 448 LRQLESASMKEYYFKADHPTTLSSGASNLKYR-NPKYLSMLNHLRFYLPQVYPKLNKILFLDDDIVVQKDLTRLWSVDLQ 526 (604)
Q Consensus 448 lkqles~~~~~y~F~~~~~~~l~~~~~~~~~r-np~yiS~~~y~Rf~LPeLLP~ldKVLYLD~DVIVqgDLseLw~iDL~ 526 (604)
+..+..+..+.+.. ..++ .++++|.++|+||+||++||+++|+||||+|+||.|||++||.+|++
T Consensus 58 -----~~~i~~~~id~~~~---------~~~~~~~~~~s~~v~~R~fiadlf~~~dK~lylD~Dvi~~g~l~~lf~~~~~ 123 (325)
T COG1442 58 -----KSFIVLEVIDIEPF---------LDYPPFTKRFSKMVLVRYFLADLFPQYDKMLYLDVDVIFCGDLSELFFIDLE 123 (325)
T ss_pred -----ccceeeEEEechhh---------hcccccccchHHHHHHHHHHHHhccccCeEEEEecCEEEcCcHHHHHhcCCC
Confidence 11222222222211 1223 45789999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeccCchhhhhccccccCCccccc-cCCCCCCccccceeeeehHHHHhhChHHHHHHHHHHc-Ccce
Q 007412 527 GKVNGAVETCGESFHRFDKYLNFTNPHIAR-SFDPNACGWAYGMNMFDLKEWKKKDITGIYHKWQNMV-GRIL 597 (604)
Q Consensus 527 gkviAAVeDc~~~f~r~~~yLnfS~P~I~~-~fd~~~cYFNSGVLLiDL~kWRe~nIt~k~~~wle~n-dr~L 597 (604)
|+++|||.|+......- .. .++ .......|||+|||++|++.||+++++++++++++.. +...
T Consensus 124 ~~~~aaV~D~~~~~~~~--~~------~~~~~~~~~~~yFNaG~llinl~~W~~~~i~~k~i~~~~~~~~~~~ 188 (325)
T COG1442 124 EYYLAAVRDVFSHYMKE--GA------LRLEKGDLEGSYFNAGVLLINLKLWREENIFEKLIELLKDKENDLL 188 (325)
T ss_pred cceEEEEeehhhhhhhh--hh------hHhhhcccccccCccceeeehHHHHHHhhhHHHHHHHHhccccccC
Confidence 99999999986421110 00 011 1123467999999999999999999999999998766 5443
No 15
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=99.93 E-value=3.5e-26 Score=234.16 Aligned_cols=175 Identities=21% Similarity=0.322 Sum_probs=115.5
Q ss_pred EEEEeCCc-cccccceehhhhccCCCCceEEEEEeCCCchhhhhhhhhcCCCCCcceeeecccchhhcccccchhhhhhc
Q 007412 374 YALFSDNV-LAASVVVNSTIMNAKDSSKHVFHLVTDKLNFGAMNMWFLLNPPGKAAIHVENVDEFKWLNSSYCPVLRQLE 452 (604)
Q Consensus 374 Ial~SDNv-LaasVvInSil~Nsk~P~~ivFHIVTD~in~~amk~WF~~N~~~~A~VeV~nie~f~wL~~sy~Pvlkqle 452 (604)
||++.+|| ..++|+|+|++.|+. ..++|||++|+++....+.+...-.. .
T Consensus 5 iv~~~~~y~~~~~~~i~Sil~n~~--~~~~fhii~d~~s~~~~~~l~~~~~~---------------------------~ 55 (280)
T cd06431 5 IVCAGYNASRDVVTLVKSVLFYRR--NPLHFHLITDEIARRILATLFQTWMV---------------------------P 55 (280)
T ss_pred EEEccCCcHHHHHHHHHHHHHcCC--CCEEEEEEECCcCHHHHHHHHHhccc---------------------------c
Confidence 67777887 556799999999985 35999999999886443333211000 0
Q ss_pred cCCcEEEEecCCCCCccccCcccccCCCCCCcchh-hhHHhhhhhhcC-CCCeEEEEecceeEecCcHHHHhc--CCCC-
Q 007412 453 SASMKEYYFKADHPTTLSSGASNLKYRNPKYLSML-NHLRFYLPQVYP-KLNKILFLDDDIVVQKDLTRLWSV--DLQG- 527 (604)
Q Consensus 453 s~~~~~y~F~~~~~~~l~~~~~~~~~rnp~yiS~~-~y~Rf~LPeLLP-~ldKVLYLD~DVIVqgDLseLw~i--DL~g- 527 (604)
+.++.+|..+ ... ..+. ..++ .++|.. +|+||+||++|| +++||||||+|+||++||++||++ |+.|
T Consensus 56 ~~~i~f~~i~--~~~----~~~~-~~~~-~~~s~~y~y~RL~ip~llp~~~dkvLYLD~Diiv~~di~eL~~~~~~~~~~ 127 (280)
T cd06431 56 AVEVSFYNAE--ELK----SRVS-WIPN-KHYSGIYGLMKLVLTEALPSDLEKVIVLDTDITFATDIAELWKIFHKFTGQ 127 (280)
T ss_pred CcEEEEEEhH--Hhh----hhhc-cCcc-cchhhHHHHHHHHHHHhchhhcCEEEEEcCCEEEcCCHHHHHHHhhhcCCC
Confidence 1112222221 000 0000 1122 355544 889999999999 599999999999999999999998 7866
Q ss_pred CeEEEEeccCchhhhhcccc-ccCCccccccCCCCCCccccceeeeehHHHHhhChHHHHHHHHHHc
Q 007412 528 KVNGAVETCGESFHRFDKYL-NFTNPHIARSFDPNACGWAYGMNMFDLKEWKKKDITGIYHKWQNMV 593 (604)
Q Consensus 528 kviAAVeDc~~~f~r~~~yL-nfS~P~I~~~fd~~~cYFNSGVLLiDL~kWRe~nIt~k~~~wle~n 593 (604)
+++|||+|...-+ .... ....| +.....|||||||||||++||++++++++..+.+++
T Consensus 128 ~~~a~v~~~~~~~---~~~~~~~~~~-----~~~~~~yFNsGVmlinL~~wR~~~~~~~~~~~~~~~ 186 (280)
T cd06431 128 QVLGLVENQSDWY---LGNLWKNHRP-----WPALGRGFNTGVILLDLDKLRKMKWESMWRLTAERE 186 (280)
T ss_pred cEEEEeccchhhh---hhhhhhccCC-----CcccccceeeeeeeeeHHHHHhhCHHHHHHHHHHHH
Confidence 5778887753211 1110 00011 112235999999999999999999999987666543
No 16
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=99.92 E-value=1.6e-25 Score=225.35 Aligned_cols=181 Identities=17% Similarity=0.209 Sum_probs=116.1
Q ss_pred eeEEEE-eC-Cc-cccccceehhhhccCCCCceEEEEEeCCCchhhhhhhhhcCCCCCcceeeecccchhhcccccchhh
Q 007412 372 YHYALF-SD-NV-LAASVVVNSTIMNAKDSSKHVFHLVTDKLNFGAMNMWFLLNPPGKAAIHVENVDEFKWLNSSYCPVL 448 (604)
Q Consensus 372 iHIal~-SD-Nv-LaasVvInSil~Nsk~P~~ivFHIVTD~in~~amk~WF~~N~~~~A~VeV~nie~f~wL~~sy~Pvl 448 (604)
+||... +| +| ..++|++.|++.|+. ..++|||++++++.. .+..+ +.+ ..
T Consensus 1 ini~~~~~~~~y~~~~~v~l~Sll~nn~--~~~~fyil~~~is~e-~~~~l---------------~~~---~~------ 53 (248)
T cd06432 1 INIFSVASGHLYERFLRIMMLSVMKNTK--SPVKFWFIKNFLSPQ-FKEFL---------------PEM---AK------ 53 (248)
T ss_pred CeEEEEcCcHHHHHHHHHHHHHHHHcCC--CCEEEEEEeCCCCHH-HHHHH---------------HHH---HH------
Confidence 355443 44 46 446799999999985 479999999998852 11111 111 00
Q ss_pred hhhccCCcEEEEecCCCCCccccCcccccCCCCCCcchhhhHHhhhhhhcC-CCCeEEEEecceeEecCcHHHHhcCCCC
Q 007412 449 RQLESASMKEYYFKADHPTTLSSGASNLKYRNPKYLSMLNHLRFYLPQVYP-KLNKILFLDDDIVVQKDLTRLWSVDLQG 527 (604)
Q Consensus 449 kqles~~~~~y~F~~~~~~~l~~~~~~~~~rnp~yiS~~~y~Rf~LPeLLP-~ldKVLYLD~DVIVqgDLseLw~iDL~g 527 (604)
-.+..+..+.++. +. ....++... ....+|.|++++++|| +++||||||+|+||.+||++||++||+|
T Consensus 54 --~~~~~i~~i~i~~--~~------~~~~~~~~~-~~~~~y~rL~~~~lLP~~vdkvLYLD~Dilv~~dL~eL~~~dl~~ 122 (248)
T cd06432 54 --EYGFEYELVTYKW--PR------WLHKQTEKQ-RIIWGYKILFLDVLFPLNVDKVIFVDADQIVRTDLKELMDMDLKG 122 (248)
T ss_pred --HhCCceEEEEecC--hh------hhhcccccc-hhHHHHHHHHHHHhhhhccCEEEEEcCCceecccHHHHHhcCcCC
Confidence 0112333333321 00 000111111 1356789999999999 5999999999999999999999999999
Q ss_pred CeEEEEeccCchhhhhccccccCCccccccCCCCCCccccceeeeehHHHHhhChHHHHHHHHHH
Q 007412 528 KVNGAVETCGESFHRFDKYLNFTNPHIARSFDPNACGWAYGMNMFDLKEWKKKDITGIYHKWQNM 592 (604)
Q Consensus 528 kviAAVeDc~~~f~r~~~yLnfS~P~I~~~fd~~~cYFNSGVLLiDL~kWRe~nIt~k~~~wle~ 592 (604)
+++|||+||..... ......+.......++ ....|||||||||||++||++++++++.++++.
T Consensus 123 ~~~Aav~d~~~~~~-~~~~~~~~~~~~~~~l-~~~~YfNSGVmliNL~~wR~~~i~~~~~~~~~~ 185 (248)
T cd06432 123 APYGYTPFCDSRKE-MDGFRFWKQGYWKSHL-RGRPYHISALYVVDLKRFRRIAAGDRLRGQYQQ 185 (248)
T ss_pred CeEEEeeccccchh-cccchhhhhhhhhhhc-CCCCccceeeEEEeHHHHHHHhHHHHHHHHHHH
Confidence 99999999864211 0000000000001122 235699999999999999999999977776653
No 17
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=99.92 E-value=1.3e-24 Score=208.90 Aligned_cols=184 Identities=26% Similarity=0.387 Sum_probs=120.5
Q ss_pred eEEEEeC-Cccc-cccceehhhhccCCCCceEEEEEeCCCchhhhhhhhhcCCCCCcceeeecccchhhcccccchhhhh
Q 007412 373 HYALFSD-NVLA-ASVVVNSTIMNAKDSSKHVFHLVTDKLNFGAMNMWFLLNPPGKAAIHVENVDEFKWLNSSYCPVLRQ 450 (604)
Q Consensus 373 HIal~SD-NvLa-asVvInSil~Nsk~P~~ivFHIVTD~in~~amk~WF~~N~~~~A~VeV~nie~f~wL~~sy~Pvlkq 450 (604)
||++++| +|+. ++|+|+|++.|++++..++|||++++.+....+..-... ..+.
T Consensus 1 ~i~~~~d~~y~~~~~v~i~Sl~~~~~~~~~~~i~i~~~~~~~~~~~~l~~~~-------------------~~~~----- 56 (250)
T PF01501_consen 1 HIVLACDDNYLEGAAVLIKSLLKNNPDPSNLHIYIITDDISEEDFEKLRALA-------------------AEVI----- 56 (250)
T ss_dssp -EEEECSGGGHHHHHHHHHHHHHTTTT-SSEEEEEEESSS-HHHHHHHHHHS-------------------CCCC-----
T ss_pred CEEEEeCHHHHHHHHHHHHHHHHhccccccceEEEecCCCCHHHHHHHhhhc-------------------cccc-----
Confidence 8999999 7865 569999999999987789999999998864333321111 0000
Q ss_pred hccCCcEEEEecCCCCCccccCcccccCCCCCCcchhhhHHhhhhhhcCCCCeEEEEecceeEecCcHHHHhcCCCCCeE
Q 007412 451 LESASMKEYYFKADHPTTLSSGASNLKYRNPKYLSMLNHLRFYLPQVYPKLNKILFLDDDIVVQKDLTRLWSVDLQGKVN 530 (604)
Q Consensus 451 les~~~~~y~F~~~~~~~l~~~~~~~~~rnp~yiS~~~y~Rf~LPeLLP~ldKVLYLD~DVIVqgDLseLw~iDL~gkvi 530 (604)
......+..... + ...........+++..+|+||++|++||+++||||||+|+||.+||++||+++++|+.+
T Consensus 57 ----~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~rl~i~~ll~~~drilyLD~D~lv~~dl~~lf~~~~~~~~~ 128 (250)
T PF01501_consen 57 ----EIEPIEFPDISM--L--EEFQFNSPSKRHFSPATFARLFIPDLLPDYDRILYLDADTLVLGDLDELFDLDLQGKYL 128 (250)
T ss_dssp ----TTECEEETSGGH--H--H--TTS-HCCTCGGGGGGGGGGHHHHSTTSSEEEEE-TTEEESS-SHHHHC---TTSSE
T ss_pred ----ceeeeccchHHh--h--hhhhhcccccccccHHHHHHhhhHHHHhhcCeEEEEcCCeeeecChhhhhcccchhhhc
Confidence 001111110000 0 00000112357899999999999999999999999999999999999999999999999
Q ss_pred EEEeccCchhhhhccccccCCccccccCCCCCCccccceeeeehHHHHhhChHHHHHHHHHHc
Q 007412 531 GAVETCGESFHRFDKYLNFTNPHIARSFDPNACGWAYGMNMFDLKEWKKKDITGIYHKWQNMV 593 (604)
Q Consensus 531 AAVeDc~~~f~r~~~yLnfS~P~I~~~fd~~~cYFNSGVLLiDL~kWRe~nIt~k~~~wle~n 593 (604)
|||+|+... .. .+...+..........+|||+||||+|+++||++++.++++.|++.+
T Consensus 129 ~a~~~~~~~--~~---~~~~~~~~~~~~~~~~~~fNsGv~l~~~~~~~~~~~~~~~~~~~~~~ 186 (250)
T PF01501_consen 129 AAVEDESFD--NF---PNKRFPFSERKQPGNKPYFNSGVMLFNPSKWRKENILQKLIEWLEQN 186 (250)
T ss_dssp EEEE----H--HH---HTSTTSSEEECESTTTTSEEEEEEEEEHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccchhh--hh---hhcccchhhcccCcccccccCcEEEEeechhhhhhhhhhhhhhhhhc
Confidence 999994321 11 11111111112334579999999999999999999999999998877
No 18
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=99.90 E-value=1.5e-23 Score=217.26 Aligned_cols=183 Identities=16% Similarity=0.360 Sum_probs=116.3
Q ss_pred eeEEEEeC-Cccc-cccceehhhhccCCCCceEEEEEeCCCchhhhhhhhhcCCCCCcceeeecccch-hhcccccchhh
Q 007412 372 YHYALFSD-NVLA-ASVVVNSTIMNAKDSSKHVFHLVTDKLNFGAMNMWFLLNPPGKAAIHVENVDEF-KWLNSSYCPVL 448 (604)
Q Consensus 372 iHIal~SD-NvLa-asVvInSil~Nsk~P~~ivFHIVTD~in~~amk~WF~~N~~~~A~VeV~nie~f-~wL~~sy~Pvl 448 (604)
+|+|+.+- +.+. .-|+|+|++.|+. ..++|||++|... +.||. +.+ +| ...+.
T Consensus 1 ~~~~vv~~g~~~~~~~~~lkSil~~n~--~~l~Fhi~~d~~~----~~~~~--------------~~l~~~-~~~~~--- 56 (304)
T cd06430 1 MHLAVVACGERLEETLTMLKSAIVFSQ--KPLRFHIFAEDQL----KQSFK--------------EKLDDW-PELID--- 56 (304)
T ss_pred CEEEEEEcCCcHHHHHHHHHHHHHhCC--CCEEEEEEECCcc----CHHHH--------------HHHHHH-HHhcc---
Confidence 46665444 3344 4589999999985 4699999999843 23332 111 12 00000
Q ss_pred hhhccCCcEEEEecCCCCCccccCcccccCCCCCCcchhhhHHhhhhhhcCCCCeEEEEecceeEecCcHHHHhc--CCC
Q 007412 449 RQLESASMKEYYFKADHPTTLSSGASNLKYRNPKYLSMLNHLRFYLPQVYPKLNKILFLDDDIVVQKDLTRLWSV--DLQ 526 (604)
Q Consensus 449 kqles~~~~~y~F~~~~~~~l~~~~~~~~~rnp~yiS~~~y~Rf~LPeLLP~ldKVLYLD~DVIVqgDLseLw~i--DL~ 526 (604)
.......|... .+. ... ..+ +..+++.+|+||++|++||+++||||||+|+||.+||++||++ |++
T Consensus 57 ---~~i~~~i~~I~--~P~----~~~-~~w--s~l~~~~~y~RL~ip~lLp~~dkvLYLD~Dii~~~dI~eL~~~~~df~ 124 (304)
T cd06430 57 ---RKFNYTLHPIT--FPS----GNA-AEW--KKLFKPCAAQRLFLPSLLPDVDSLLYVDTDILFLRPVEEIWSFLKKFN 124 (304)
T ss_pred ---ceeeeEEEEEe--cCc----cch-hhh--hhcccHHHHHHHHHHHHhhhhceEEEeccceeecCCHHHHHHHHhhcC
Confidence 00011222211 110 000 011 2456679999999999999999999999999999999999999 999
Q ss_pred CC-eEEEEeccCc-hhhhhccccccCCccccccCCCCCCccccceeeeehHHHHh-----------hChHHHHHHHHHHc
Q 007412 527 GK-VNGAVETCGE-SFHRFDKYLNFTNPHIARSFDPNACGWAYGMNMFDLKEWKK-----------KDITGIYHKWQNMV 593 (604)
Q Consensus 527 gk-viAAVeDc~~-~f~r~~~yLnfS~P~I~~~fd~~~cYFNSGVLLiDL~kWRe-----------~nIt~k~~~wle~n 593 (604)
|+ ++|++++-.. ....|.... .+| + ....|||||||+|||++||+ .+++++++++++.+
T Consensus 125 ~~~~aA~v~e~~~~~~~~~~~~~--~~~-----~-~~~~gFNSGVmLmNL~~wR~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (304)
T cd06430 125 STQLAAMAPEHEEPNIGWYNRFA--RHP-----Y-YGKTGVNSGVMLMNLTRMRRKYFKNDMTPVGLRWEEILMPLYKKY 196 (304)
T ss_pred CCeEEEEEecccccchhhhhhhc--ccC-----c-ccccccccceeeeeHHHHHhhhcccccchhhhhHHHHHHHHHHhc
Confidence 86 5666665422 111121100 111 1 12347999999999999999 78899999999987
Q ss_pred -CcceE
Q 007412 594 -GRILY 598 (604)
Q Consensus 594 -dr~Lw 598 (604)
.+..|
T Consensus 197 ~~~l~~ 202 (304)
T cd06430 197 KLKITW 202 (304)
T ss_pred ccCCCC
Confidence 55443
No 19
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=99.42 E-value=5.8e-13 Score=133.07 Aligned_cols=81 Identities=16% Similarity=0.176 Sum_probs=65.9
Q ss_pred CCcchhhhHHhhhhhhcCCCCeEEEEecceeEecCcHHHHhcCCCCCeEEEEeccCchhhhhccccccCCccccccCCCC
Q 007412 482 KYLSMLNHLRFYLPQVYPKLNKILFLDDDIVVQKDLTRLWSVDLQGKVNGAVETCGESFHRFDKYLNFTNPHIARSFDPN 561 (604)
Q Consensus 482 ~yiS~~~y~Rf~LPeLLP~ldKVLYLD~DVIVqgDLseLw~iDL~gkviAAVeDc~~~f~r~~~yLnfS~P~I~~~fd~~ 561 (604)
.+++..+|.||+++++. +++||||||+|+||.+||++||++ ++.++||.|+..
T Consensus 72 ~~~~~~~~~kl~~~~l~-~~drvlylD~D~~v~~~i~~Lf~~---~~~~~a~~d~~~----------------------- 124 (240)
T cd02537 72 RPRFKDTYTKLRLWNLT-EYDKVVFLDADTLVLRNIDELFDL---PGEFAAAPDCGW----------------------- 124 (240)
T ss_pred chHHHHHhHHHHhcccc-ccceEEEEeCCeeEccCHHHHhCC---CCceeeecccCc-----------------------
Confidence 35677899999999975 699999999999999999999987 677888887631
Q ss_pred CCccccceeeeehHHHHhhChHHHHHHHHHHc
Q 007412 562 ACGWAYGMNMFDLKEWKKKDITGIYHKWQNMV 593 (604)
Q Consensus 562 ~cYFNSGVLLiDL~kWRe~nIt~k~~~wle~n 593 (604)
..|||||||+||+.. ++.+.+++++..+
T Consensus 125 ~~~fNsGv~l~~~~~----~~~~~~~~~~~~~ 152 (240)
T cd02537 125 PDLFNSGVFVLKPSE----ETFNDLLDALQDT 152 (240)
T ss_pred cccccceEEEEcCCH----HHHHHHHHHHhcc
Confidence 248999999999964 4556666666654
No 20
>PLN00176 galactinol synthase
Probab=99.33 E-value=6.1e-12 Score=132.76 Aligned_cols=92 Identities=18% Similarity=0.239 Sum_probs=65.9
Q ss_pred hhhHHhhhhhhcCCCCeEEEEecceeEecCcHHHHhcCCCCCeEEEEeccCchhh--hhcc-----------ccccCCcc
Q 007412 487 LNHLRFYLPQVYPKLNKILFLDDDIVVQKDLTRLWSVDLQGKVNGAVETCGESFH--RFDK-----------YLNFTNPH 553 (604)
Q Consensus 487 ~~y~Rf~LPeLLP~ldKVLYLD~DVIVqgDLseLw~iDL~gkviAAVeDc~~~f~--r~~~-----------yLnfS~P~ 553 (604)
.+|.||.++++. +++||||||+|+||.++|++||+++ +..+|||.||..+.. .+.. .+.| |.
T Consensus 100 i~~tKl~iw~l~-~ydkvlyLDaD~lv~~nid~Lf~~~--~~~~aAV~dc~~~~~~~~~p~~~~~~c~~~~~~~~w--p~ 174 (333)
T PLN00176 100 INYSKLRIWEFV-EYSKMIYLDGDIQVFENIDHLFDLP--DGYFYAVMDCFCEKTWSHTPQYKIGYCQQCPDKVTW--PA 174 (333)
T ss_pred hhhhhhhhcccc-ccceEEEecCCEEeecChHHHhcCC--CcceEEEecccccccccccccccccccccchhhccc--hh
Confidence 467799999976 7999999999999999999999884 335899999964311 1000 0111 11
Q ss_pred ccccCCCCCCccccceeeeehHHHHhhChHHH
Q 007412 554 IARSFDPNACGWAYGMNMFDLKEWKKKDITGI 585 (604)
Q Consensus 554 I~~~fd~~~cYFNSGVLLiDL~kWRe~nIt~k 585 (604)
. .+. +...||||||||||+..|+.+++.+.
T Consensus 175 ~-~g~-~~~~yFNSGVlvinps~~~~~~ll~~ 204 (333)
T PLN00176 175 E-LGP-PPPLYFNAGMFVFEPSLSTYEDLLET 204 (333)
T ss_pred h-ccC-CCCCeEEeEEEEEEcCHHHHHHHHHH
Confidence 0 011 23579999999999999998776643
No 21
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family. N-acetylglucosaminyltransferase is a fungal enzyme that catalyzes the addition of N-acetyl-D-glucosamine to mannotetraose side chains by an alpha 1-2 linkage during the synthesis of mannan. The N-acetyl-D-glucosamine moiety in mannan plays a role in the attachment of mannan to asparagine residues in proteins. The mannotetraose and its N-acetyl-D-glucosamine derivative side chains of mannan are the principle immunochemical determinants on the cell surface. N-acetylglucosaminyltransferase is a member of glycosyltransferase family 8, which are, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed, retaining glycosyltransferases.
Probab=99.02 E-value=2.5e-10 Score=117.99 Aligned_cols=81 Identities=11% Similarity=0.097 Sum_probs=66.8
Q ss_pred CCcchhhhHHhhhhhhcCCCCeEEEEecceeEecCcHHHHhcCCCCCeEEEEeccCchhhhhccccccCCccccccCCCC
Q 007412 482 KYLSMLNHLRFYLPQVYPKLNKILFLDDDIVVQKDLTRLWSVDLQGKVNGAVETCGESFHRFDKYLNFTNPHIARSFDPN 561 (604)
Q Consensus 482 ~yiS~~~y~Rf~LPeLLP~ldKVLYLD~DVIVqgDLseLw~iDL~gkviAAVeDc~~~f~r~~~yLnfS~P~I~~~fd~~ 561 (604)
..++. +|.||.++++ ++++||||||+|+||.++|.+||+++.... +||+. ..
T Consensus 75 ~~~~~-~~tKl~~~~l-~~y~kvlyLDaD~l~~~~ideLf~~~~~~~-~Aap~-~~------------------------ 126 (278)
T cd06914 75 AYWAK-SLTKLRAFNQ-TEYDRIIYFDSDSIIRHPMDELFFLPNYIK-FAAPR-AY------------------------ 126 (278)
T ss_pred ccHHH-HHHHHHhccc-cceeeEEEecCChhhhcChHHHhcCCcccc-eeeec-Cc------------------------
Confidence 35555 4999999998 689999999999999999999999984333 45543 10
Q ss_pred CCccccceeeeehHHHHhhChHHHHHHHHH
Q 007412 562 ACGWAYGMNMFDLKEWKKKDITGIYHKWQN 591 (604)
Q Consensus 562 ~cYFNSGVLLiDL~kWRe~nIt~k~~~wle 591 (604)
-||||||||||+..|+.+++++++.+...
T Consensus 127 -~~FNSGvmvi~ps~~~~~~l~~~~~~~~~ 155 (278)
T cd06914 127 -WKFASHLMVIKPSKEAFKELMTEILPAYL 155 (278)
T ss_pred -ceecceeEEEeCCHHHHHHHHHHHHHhcc
Confidence 18999999999999999999999988654
No 22
>KOG1879 consensus UDP-glucose:glycoprotein glucosyltransferase [Carbohydrate transport and metabolism]
Probab=98.76 E-value=7.7e-09 Score=121.68 Aligned_cols=182 Identities=16% Similarity=0.272 Sum_probs=122.3
Q ss_pred CCCCceeEEEEeC-C-ccccc-cceehhhhccCCCCceEEEEEeCCCchhhhhhhhhcCCCCCcceeeecccchhhcccc
Q 007412 367 ENPNLYHYALFSD-N-VLAAS-VVVNSTIMNAKDSSKHVFHLVTDKLNFGAMNMWFLLNPPGKAAIHVENVDEFKWLNSS 443 (604)
Q Consensus 367 ~dp~liHIal~SD-N-vLaas-VvInSil~Nsk~P~~ivFHIVTD~in~~amk~WF~~N~~~~A~VeV~nie~f~wL~~s 443 (604)
.|.+.|||.-..- . |-+-. ++|.|++.|++.| +.|.++-..++. .|+ .
T Consensus 1177 ~~~~vINIFSvASGHLYERflrIMm~SvlknTktp--VKFWfLkNyLSP-----------------------tFK----e 1227 (1470)
T KOG1879|consen 1177 KDKEVINIFSVASGHLYERFLRIMMLSVLKNTKTP--VKFWFLKNYLSP-----------------------TFK----E 1227 (1470)
T ss_pred CccceEEEEeeccccHHHHHHHHHHHHHHhCCCCc--eeEEeehhhcCh-----------------------HHH----H
Confidence 3444788764333 2 33444 7889999999976 666555554432 110 1
Q ss_pred cchhhhhhccCCcEEEEecCCCCCccccCcccccCCCCCCcchhhhHHhhhhhhcC-CCCeEEEEecceeEecCcHHHHh
Q 007412 444 YCPVLRQLESASMKEYYFKADHPTTLSSGASNLKYRNPKYLSMLNHLRFYLPQVYP-KLNKILFLDDDIVVQKDLTRLWS 522 (604)
Q Consensus 444 y~Pvlkqles~~~~~y~F~~~~~~~l~~~~~~~~~rnp~yiS~~~y~Rf~LPeLLP-~ldKVLYLD~DVIVqgDLseLw~ 522 (604)
.+|.+-+ .+++......-.-|.+|.....++. .+..|--+||.-+|| +++||||.|+|-||..||.||.+
T Consensus 1228 ~iP~mA~--eYnFeyElv~YkWPrWLhqQ~EKQR-------iiWgyKILFLDVLFPL~v~KvIfVDADQIVR~DL~EL~d 1298 (1470)
T KOG1879|consen 1228 SIPHMAK--EYNFEYELVQYKWPRWLHQQTEKQR-------IIWGYKILFLDVLFPLNVDKVIFVDADQIVRADLKELMD 1298 (1470)
T ss_pred HHHHHHH--HhCceEEEEEecCchhhhhhhhhhh-------hhhhhhhhhhhhccccccceEEEEcchHhhhhhhHHHHh
Confidence 1233321 1122111111112334432222221 456788899999999 69999999999999999999999
Q ss_pred cCCCCCeEEEEeccCchhhhhccccccCCccccccCCCCCCccccceeeeehHHHHhhChHHHHHH
Q 007412 523 VDLQGKVNGAVETCGESFHRFDKYLNFTNPHIARSFDPNACGWAYGMNMFDLKEWKKKDITGIYHK 588 (604)
Q Consensus 523 iDL~gkviAAVeDc~~~f~r~~~yLnfS~P~I~~~fd~~~cYFNSGVLLiDL~kWRe~nIt~k~~~ 588 (604)
+||+|.+.|-++.|..+ ..+..|-+|+...+++.+. +..|.-|...|+||++.|+-.-..++.-
T Consensus 1299 fdl~GaPygYtPfCdsR-~EMDGyRFWK~GYW~~hL~-grkYHISALYVVDLkrFReiaAGDrLR~ 1362 (1470)
T KOG1879|consen 1299 FDLGGAPYGYTPFCDSR-REMDGYRFWKQGYWKKHLR-GRKYHISALYVVDLKRFREIAAGDRLRG 1362 (1470)
T ss_pred cccCCCccccCcccccc-ccccchhHHhhhHHHHHhc-cCccccceeeeeeHHHHHhcccchHHHH
Confidence 99999999999999753 3455666777666666553 4789999999999999999988877765
No 23
>COG5597 Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=95.63 E-value=0.0054 Score=65.05 Aligned_cols=37 Identities=19% Similarity=0.414 Sum_probs=31.5
Q ss_pred hhhHHhhhhhhcCCCCeEEEEecceeEecCcHHHHhcC
Q 007412 487 LNHLRFYLPQVYPKLNKILFLDDDIVVQKDLTRLWSVD 524 (604)
Q Consensus 487 ~~y~Rf~LPeLLP~ldKVLYLD~DVIVqgDLseLw~iD 524 (604)
.++.++-+-+.- ++|||+|||+|.||.+++.+||+..
T Consensus 155 ~mftKLrVfeqt-EyDRvifLDsDaivlknmDklFd~P 191 (368)
T COG5597 155 DMFTKLRVFEQT-EYDRVIFLDSDAIVLKNMDKLFDYP 191 (368)
T ss_pred HHhHHHHhhhhh-hhceEEEeccchHHhhhhHHHhcch
Confidence 566677766655 7999999999999999999999865
No 24
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [].
Probab=70.81 E-value=6.7 Score=38.26 Aligned_cols=73 Identities=18% Similarity=0.088 Sum_probs=42.4
Q ss_pred cchhhhHHhh-hhhhcCCCCeEEEEecceeEecCcHHHHhcCCCCCeEEEEeccCchhhhhccccccCCccccccCCCCC
Q 007412 484 LSMLNHLRFY-LPQVYPKLNKILFLDDDIVVQKDLTRLWSVDLQGKVNGAVETCGESFHRFDKYLNFTNPHIARSFDPNA 562 (604)
Q Consensus 484 iS~~~y~Rf~-LPeLLP~ldKVLYLD~DVIVqgDLseLw~iDL~gkviAAVeDc~~~f~r~~~yLnfS~P~I~~~fd~~~ 562 (604)
+......|.- +-+++..---|+|+|+|+|..+|..+++ +-.+.-+.+-.|+.... ......
T Consensus 48 ~~~~~~~K~~~~~~~L~~G~~vl~~D~Dvv~~~dp~~~~--~~~~~Di~~~~d~~~~~----------------~~~~~~ 109 (212)
T PF03407_consen 48 FQKLTWLKPKVLLDLLELGYDVLFSDADVVWLRDPLPYF--ENPDADILFSSDGWDGT----------------NSDRNG 109 (212)
T ss_pred HHHHHHHHHHHHHHHHHcCCceEEecCCEEEecCcHHhh--ccCCCceEEecCCCccc----------------chhhcC
Confidence 3334444443 3345543346999999999999999999 22333344444654210 001122
Q ss_pred Cccccceeeeeh
Q 007412 563 CGWAYGMNMFDL 574 (604)
Q Consensus 563 cYFNSGVLLiDL 574 (604)
..+|+|++.+--
T Consensus 110 ~~~n~G~~~~r~ 121 (212)
T PF03407_consen 110 NLVNTGFYYFRP 121 (212)
T ss_pred CccccceEEEec
Confidence 346999999864
No 25
>PF10819 DUF2564: Protein of unknown function (DUF2564) ; InterPro: IPR020314 This entry contains proteins with no known function.
Probab=66.86 E-value=14 Score=32.53 Aligned_cols=69 Identities=16% Similarity=0.279 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHhcccc--cCcCCCCCHHHHHHHHHHHHHHhhccc--cChHHHHHHHHHHHHHHHHHHHHHH
Q 007412 252 QELQSRLKESQRALGDTA--ADADLHHSVPEKIKLMGQVLSKAREQL--YDCKLVTGKLRAMLQTADEQVRSLK 321 (604)
Q Consensus 252 ~eL~~~i~e~~r~l~~a~--~d~~l~~~~~~~~~~m~~~i~~ak~~~--~d~~~~~~kLra~l~~~ee~~~~~~ 321 (604)
+++.-.|+--|+++|-|| +|+++-..|...++....-+..|++.. .|- .+...=...|+..|-|+..++
T Consensus 6 kQve~aVetAqkmvG~AT~smdp~~Le~A~qAve~Ar~ql~~a~~~at~lD~-~Fl~~~~~~L~~~eHQL~Eak 78 (79)
T PF10819_consen 6 KQVEMAVETAQKMVGQATMSMDPDQLEHATQAVEDAREQLSQAKSHATGLDE-PFLQQSEQLLDDCEHQLDEAK 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHHHHHHHhc
Confidence 567778999999999999 566788888899999998888888655 444 677778888888888887665
No 26
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose. It is implicated in late Golgi modifications [][][]. The proteins matching this entry are conserved in fungi and also found in some phototrophic organisms.; GO: 0006486 protein glycosylation
Probab=63.91 E-value=4.6 Score=41.92 Aligned_cols=37 Identities=22% Similarity=0.417 Sum_probs=30.2
Q ss_pred hhHHhhhhhhcCCCCeEEEEecceeEecCcHHHHhcC
Q 007412 488 NHLRFYLPQVYPKLNKILFLDDDIVVQKDLTRLWSVD 524 (604)
Q Consensus 488 ~y~Rf~LPeLLP~ldKVLYLD~DVIVqgDLseLw~iD 524 (604)
.|..=.+.-++...+.|||||+|.|...|++.||+.+
T Consensus 78 ~~~~K~lA~l~ssFeevllLDaD~vpl~~p~~lF~~~ 114 (271)
T PF11051_consen 78 GFQNKWLALLFSSFEEVLLLDADNVPLVDPEKLFESE 114 (271)
T ss_pred CchhhhhhhhhCCcceEEEEcCCcccccCHHHHhcCc
Confidence 3444445567878999999999999999999999753
No 27
>KOG1928 consensus Alpha-1,4-N-acetylglucosaminyltransferase [Carbohydrate transport and metabolism]
Probab=59.43 E-value=4.7 Score=44.59 Aligned_cols=33 Identities=33% Similarity=0.578 Sum_probs=24.9
Q ss_pred hhhhHHhhhhhhcCCCCeEEEEecceeEecCcHHHHh
Q 007412 486 MLNHLRFYLPQVYPKLNKILFLDDDIVVQKDLTRLWS 522 (604)
Q Consensus 486 ~~~y~Rf~LPeLLP~ldKVLYLD~DVIVqgDLseLw~ 522 (604)
..+..|+.+ ++ .+. =||||.|+||.+++++|=+
T Consensus 227 lSdl~RLA~--Ly-KYG-GvYLDTDvIvLksl~~l~N 259 (409)
T KOG1928|consen 227 LSDLSRLAL--LY-KYG-GVYLDTDVIVLKSLSNLRN 259 (409)
T ss_pred HHHHHHHHH--HH-HhC-CEEeeccEEEecccccccc
Confidence 456678766 33 222 2799999999999999986
No 28
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=40.72 E-value=56 Score=33.01 Aligned_cols=106 Identities=12% Similarity=0.126 Sum_probs=63.7
Q ss_pred CCchhHHHHHHhhHHHHHhh--hhhhccCCCchHHHHHHHHHHHHHHHhcccccCc--CCCCCHHHHHHHHHHHHHHhhc
Q 007412 219 DNSDSTVRLMRDQMIMARVY--LSIAKMKNKPDLQQELQSRLKESQRALGDTAADA--DLHHSVPEKIKLMGQVLSKARE 294 (604)
Q Consensus 219 ~~~d~~~r~l~dQl~~AkaY--~~iak~~~~~~l~~eL~~~i~e~~r~l~~a~~d~--~l~~~~~~~~~~m~~~i~~ak~ 294 (604)
.+-+-.++.|+++|.=||.= -.+|..+.-.+=..++..++.+++.--..|...+ ||-+++......-+..+..-+.
T Consensus 27 ~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~ 106 (219)
T TIGR02977 27 KMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALER 106 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777888877766642 3334333334444566666666655444444333 5777776665555555555555
Q ss_pred cccChHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007412 295 QLYDCKLVTGKLRAMLQTADEQVRSLKKQS 324 (604)
Q Consensus 295 ~~~d~~~~~~kLra~l~~~ee~~~~~~~q~ 324 (604)
..-.-...+.+|+.-+..++.++...+.+.
T Consensus 107 ~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~ 136 (219)
T TIGR02977 107 ELAAVEETLAKLQEDIAKLQAKLAEARARQ 136 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566677788888888887777665543
No 29
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=39.88 E-value=96 Score=28.75 Aligned_cols=74 Identities=26% Similarity=0.246 Sum_probs=54.6
Q ss_pred chHHHHHHHHHHHHHHHhcccccCcCCCCCHHHHHHHHHHHHHHhhccccCh-HHHHHHHHHHHHHHHHHHHHHHhh
Q 007412 248 PDLQQELQSRLKESQRALGDTAADADLHHSVPEKIKLMGQVLSKAREQLYDC-KLVTGKLRAMLQTADEQVRSLKKQ 323 (604)
Q Consensus 248 ~~l~~eL~~~i~e~~r~l~~a~~d~~l~~~~~~~~~~m~~~i~~ak~~~~d~-~~~~~kLra~l~~~ee~~~~~~~q 323 (604)
.++.-||+.=+.++|.+|......++ .++.+.=.+.+.+|.++++..-+. ..+..+-|+++..+|+-|+.+-=|
T Consensus 11 ~~l~~el~~L~d~lEevL~ssg~~a~--~e~~~lR~r~~~~Lk~~r~rl~~~~d~v~~~sk~a~~~tD~yV~e~PWq 85 (104)
T COG4575 11 DQLLAELQELLDTLEEVLKSSGSLAG--DEAEELRSKAESALKEARDRLGDTGDAVVQRSKAAADATDDYVRENPWQ 85 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchh--hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCch
Confidence 67888888888999999988875552 223333344566777777665565 789999999999999999876544
No 30
>PF04488 Gly_transf_sug: Glycosyltransferase sugar-binding region containing DXD motif ; InterPro: IPR007577 This entry represents those sugar-binding regions of glycosyltransferases that contain a DXD motif. The DXD motif is a short conserved motif found in many families of glycosyltransferases, which add a range of different sugars to other sugars, phosphates and proteins. DXD-containing glycosyltransferases all use nucleoside diphosphate sugars as donors and require divalent cations, usually manganese. The DXD motif is expected to play a carbohydrate binding role in sugar-nucleoside diphosphate and manganese dependent glycosyltransferases [].
Probab=37.32 E-value=17 Score=31.97 Aligned_cols=36 Identities=22% Similarity=0.414 Sum_probs=27.8
Q ss_pred CCcchhhhHHhhhhhhcCCCCeEEEEecceeEecCc-HHHH
Q 007412 482 KYLSMLNHLRFYLPQVYPKLNKILFLDDDIVVQKDL-TRLW 521 (604)
Q Consensus 482 ~yiS~~~y~Rf~LPeLLP~ldKVLYLD~DVIVqgDL-seLw 521 (604)
.+...+.++|+.+--..-. +|+|.|++|.+++ ..+-
T Consensus 61 ~~~~~sD~~R~~~L~~~GG----iY~D~D~~~~rpl~~~~~ 97 (103)
T PF04488_consen 61 NYAHKSDLLRYLVLYKYGG----IYLDLDVICLRPLDDPWL 97 (103)
T ss_pred chHHHHHHHHHHHHHHcCc----EEEeCccccCcchhhhhh
Confidence 4556788999998555533 8999999999999 5543
No 31
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=33.01 E-value=88 Score=31.17 Aligned_cols=104 Identities=17% Similarity=0.195 Sum_probs=52.6
Q ss_pred CchhHHHHHHhhHHHHHh-h-hhhhccCCCchHHHHHHHHHHHHHHHhccccc--CcCCCCCHHHHHHHHHHHHHHhhcc
Q 007412 220 NSDSTVRLMRDQMIMARV-Y-LSIAKMKNKPDLQQELQSRLKESQRALGDTAA--DADLHHSVPEKIKLMGQVLSKAREQ 295 (604)
Q Consensus 220 ~~d~~~r~l~dQl~~Aka-Y-~~iak~~~~~~l~~eL~~~i~e~~r~l~~a~~--d~~l~~~~~~~~~~m~~~i~~ak~~ 295 (604)
+-+-.+|.|.++|.-|+. . -.+|....-.+=..++...+.+++.-...|.. +-||-..+..+....+..+...+..
T Consensus 27 ~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~ 106 (221)
T PF04012_consen 27 MLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQ 106 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666665543 2 22222222233333444444444443333332 2245555555555555555555554
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHhh
Q 007412 296 LYDCKLVTGKLRAMLQTADEQVRSLKKQ 323 (604)
Q Consensus 296 ~~d~~~~~~kLra~l~~~ee~~~~~~~q 323 (604)
.-.....+.+|+.-+..++.++...+.+
T Consensus 107 ~~~~~~~~~~l~~~l~~l~~kl~e~k~k 134 (221)
T PF04012_consen 107 LDQAEAQVEKLKEQLEELEAKLEELKSK 134 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566666666666666666555444
No 32
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of Caenorhabditis elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane; PDB: 2P72_B 2P73_A 2P6W_A.
Probab=31.49 E-value=33 Score=35.19 Aligned_cols=38 Identities=21% Similarity=0.320 Sum_probs=17.4
Q ss_pred cchhhhHHhhhhhhcCCCCeEEEEecceeEecCcHHHHh
Q 007412 484 LSMLNHLRFYLPQVYPKLNKILFLDDDIVVQKDLTRLWS 522 (604)
Q Consensus 484 iS~~~y~Rf~LPeLLP~ldKVLYLD~DVIVqgDLseLw~ 522 (604)
|+..-..|=.+ .-+|+.+=|+|||+|.+|...=-+|-+
T Consensus 61 W~K~~~lr~~m-~~~P~~~wv~~lD~Dali~n~~~~L~~ 98 (239)
T PF05637_consen 61 WAKIPALRAAM-KKYPEAEWVWWLDSDALIMNPDFSLEE 98 (239)
T ss_dssp HTHHHHHHHHH-HH-TT-SEEEEE-TTEEE---------
T ss_pred hHHHHHHHHHH-HhCCCCCEEEEEcCCeEEEeccccccc
Confidence 44443344333 234889999999999999885555433
No 33
>PRK10132 hypothetical protein; Provisional
Probab=27.23 E-value=2.1e+02 Score=26.43 Aligned_cols=75 Identities=19% Similarity=0.169 Sum_probs=53.6
Q ss_pred chHHHHHHHHHHHHHHHhcccccCcCCCCCHHHHHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007412 248 PDLQQELQSRLKESQRALGDTAADADLHHSVPEKIKLMGQVLSKAREQLYDCKLVTGKLRAMLQTADEQVRSLKKQS 324 (604)
Q Consensus 248 ~~l~~eL~~~i~e~~r~l~~a~~d~~l~~~~~~~~~~m~~~i~~ak~~~~d~~~~~~kLra~l~~~ee~~~~~~~q~ 324 (604)
.+|..||+.=+.++|.+|.++..++. .++.+-=.+.+..+..|++..-|......+.|.....+++-++.+--++
T Consensus 15 e~L~~Dl~~L~~~le~ll~~~~~~~~--~~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~~a~~~~~~~V~~~Pw~s 89 (108)
T PRK10132 15 QDIQNDVNQLADSLESVLKSWGSDAK--GEAEAARRKAQALLKETRARMHGRTRVQQAARDAVGCADTFVRERPWCS 89 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence 68889999999999999877664441 1222223345557777776666666777788999999999998766554
No 34
>PF11464 Rbsn: Rabenosyn Rab binding domain; InterPro: IPR021565 Rabenosyn-5 (Rbsn) is a multivalent effector with interacts with the Rab family.Rsbn contains distinct Rab4 and Rab5 binding sites within residues 264-500 and 627-784 respectively []. Rab proteins are GTPases involved in the regulation of all stages of membrane trafficking []. ; PDB: 1Z0K_B 1YZM_A 1Z0J_B.
Probab=27.21 E-value=1.2e+02 Score=23.84 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=33.2
Q ss_pred HHhhHHHHHhhhhhhccCCCchHHHHHHHHHHHHHHHh
Q 007412 228 MRDQMIMARVYLSIAKMKNKPDLQQELQSRLKESQRAL 265 (604)
Q Consensus 228 l~dQl~~AkaY~~iak~~~~~~l~~eL~~~i~e~~r~l 265 (604)
|-.||..-+.|+.-||..+...=+.-|..+++|+++-+
T Consensus 1 LleQi~~I~~~I~qAk~~~r~dEV~~L~~NL~EL~~e~ 38 (42)
T PF11464_consen 1 LLEQINIIESYIKQAKAARRFDEVATLEENLRELQDEI 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 34799999999999999999999999999999998754
No 35
>PLN03181 glycosyltransferase; Provisional
Probab=25.60 E-value=72 Score=36.11 Aligned_cols=36 Identities=22% Similarity=0.271 Sum_probs=28.2
Q ss_pred CCCCcchhhhHHhhhhhhcCCCCeEEEEecceeEecC
Q 007412 480 NPKYLSMLNHLRFYLPQVYPKLNKILFLDDDIVVQKD 516 (604)
Q Consensus 480 np~yiS~~~y~Rf~LPeLLP~ldKVLYLD~DVIVqgD 516 (604)
.+..|+..-..|=.+- -+|+.+-|.|||.|+||...
T Consensus 179 ~p~~WaKipalRaAM~-a~PeAEWfWWLDsDALIMNp 214 (453)
T PLN03181 179 MNSYWAKLPVVRAAML-AHPEAEWIWWVDSDAVFTDM 214 (453)
T ss_pred CchhhhHHHHHHHHHH-HCCCceEEEEecCCceeecC
Confidence 3667877777774442 38999999999999999865
No 36
>PRK10698 phage shock protein PspA; Provisional
Probab=24.82 E-value=1.5e+02 Score=30.39 Aligned_cols=103 Identities=9% Similarity=0.102 Sum_probs=49.7
Q ss_pred CchhHHHHHHhhHHHHHhh--hhhhccCCCchHHHHHHHHHHHHHHHhccccc--CcCCCCCHHHHHHHHHHHHHHhhcc
Q 007412 220 NSDSTVRLMRDQMIMARVY--LSIAKMKNKPDLQQELQSRLKESQRALGDTAA--DADLHHSVPEKIKLMGQVLSKAREQ 295 (604)
Q Consensus 220 ~~d~~~r~l~dQl~~AkaY--~~iak~~~~~~l~~eL~~~i~e~~r~l~~a~~--d~~l~~~~~~~~~~m~~~i~~ak~~ 295 (604)
+-+-+++.|+|++.=+|.= -.+|..+.-.+=..++..++.++++--.-|.. +-||-+.+...-+.....+..-+..
T Consensus 28 ~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~ 107 (222)
T PRK10698 28 LVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHE 107 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666555431 22333333333334444444444433333322 2245555444444444444444444
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHh
Q 007412 296 LYDCKLVTGKLRAMLQTADEQVRSLKK 322 (604)
Q Consensus 296 ~~d~~~~~~kLra~l~~~ee~~~~~~~ 322 (604)
.-.....+.+|+.-+..++.++..++.
T Consensus 108 ~~~~~~~~~~L~~~l~~L~~ki~eak~ 134 (222)
T PRK10698 108 VTLVDETLARMKKEIGELENKLSETRA 134 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666777777777766665543
No 37
>PF03314 DUF273: Protein of unknown function, DUF273; InterPro: IPR004988 This is a family of proteins of unknown function.
Probab=22.27 E-value=61 Score=33.59 Aligned_cols=25 Identities=32% Similarity=0.563 Sum_probs=21.7
Q ss_pred hhhhhhcCCCCeEEEEecceeEecC
Q 007412 492 FYLPQVYPKLNKILFLDDDIVVQKD 516 (604)
Q Consensus 492 f~LPeLLP~ldKVLYLD~DVIVqgD 516 (604)
..+..+||+.+=||+||+||-|...
T Consensus 33 Cvva~~L~~~~~vlflDaDigVvNp 57 (222)
T PF03314_consen 33 CVVAKILPEYDWVLFLDADIGVVNP 57 (222)
T ss_pred HHHHHHhccCCEEEEEcCCceeecC
Confidence 4567889999999999999999875
No 38
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=21.90 E-value=1e+03 Score=25.77 Aligned_cols=105 Identities=22% Similarity=0.278 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHhhhccc-------cccccccccccccccC---CCCchhHHHHHHhhH
Q 007412 163 FRRQLRERRREKRAADLVQQDDEAIVKLENAAIERSKSV-------DSAVLGKYSIWRKENE---NDNSDSTVRLMRDQM 232 (604)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~y~~w~~~~~---~~~~d~~~r~l~dQl 232 (604)
++|+.|.+-|+.|-.||=+|-+|....-+..-..++-+. +....|..+-=|--.. ...+++.++-|||+|
T Consensus 7 akR~araEAR~iRmreLErqqkE~ee~~Dr~~~~~~Sr~~s~ls~~t~~S~~~sSSRRsS~DtSsS~dse~s~r~lk~~l 86 (302)
T PF09738_consen 7 AKRAARAEAREIRMRELERQQKEQEENSDRRYDSSSSRRHSDLSQWTLNSLRGSSSRRSSGDTSSSVDSEASLRDLKDSL 86 (302)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCccCCccchhhhcCCCCCCCCCCCCcccccccccccHHHHHHHH
Confidence 578899999999999998887774443333322222111 0112333332222222 234455778888887
Q ss_pred HHH-----HhhhhhhccCCC-chHH---HHHHHHHHHHHHHhcc
Q 007412 233 IMA-----RVYLSIAKMKNK-PDLQ---QELQSRLKESQRALGD 267 (604)
Q Consensus 233 ~~A-----kaY~~iak~~~~-~~l~---~eL~~~i~e~~r~l~~ 267 (604)
.=- ||-++-|.+.|- ..|. .-|+..+-|+|..+..
T Consensus 87 ~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~ 130 (302)
T PF09738_consen 87 AEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQ 130 (302)
T ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544 555777776654 2222 2345555555544443
No 39
>PRK15384 type III secretion system protein; Provisional
Probab=21.47 E-value=41 Score=35.62 Aligned_cols=69 Identities=16% Similarity=0.237 Sum_probs=39.5
Q ss_pred hhccCCCchHHHHHHHHHHHHHHHhcccccCcCCCCCHHHHHHHHHHHHHHhh---ccccChHHHHHHHHHHH
Q 007412 241 IAKMKNKPDLQQELQSRLKESQRALGDTAADADLHHSVPEKIKLMGQVLSKAR---EQLYDCKLVTGKLRAML 310 (604)
Q Consensus 241 iak~~~~~~l~~eL~~~i~e~~r~l~~a~~d~~l~~~~~~~~~~m~~~i~~ak---~~~~d~~~~~~kLra~l 310 (604)
|--.+.++-|-.-+.+-+=|.||++|-. +|+|...+-.+...++|+--.-.| +..+|-+--.+||.++-
T Consensus 66 IiNTk~~PYL~NiinaA~IE~eR~IGv~-VDGdFs~~Qk~af~kLE~~yeNIkiIYr~dvdfSMYDkKLsdIY 137 (336)
T PRK15384 66 IINTEKNPYLNNIIKAATIEKERLIGIF-VDGDFFPGQKDAFSKLEYDYENIKVIYRNDIDFSMYDKKLSEIY 137 (336)
T ss_pred eeecCcCchHHHhHhHhhhccccEEEEE-EcCCcChhHHHHHHHHHHhhhcEEEEEeccCChhhhhhHHhHHH
Confidence 3344555666666666666667776644 677766655555555554433322 23566666677776654
No 40
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=21.16 E-value=8.5e+02 Score=25.24 Aligned_cols=86 Identities=15% Similarity=0.125 Sum_probs=51.6
Q ss_pred hhhhhccCCCchHHHHHHHHHHHHHHHhcccccCcCCCCCHHHHHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHH
Q 007412 238 YLSIAKMKNKPDLQQELQSRLKESQRALGDTAADADLHHSVPEKIKLMGQVLSKAREQLYDCKLVTGKLRAMLQTADEQV 317 (604)
Q Consensus 238 Y~~iak~~~~~~l~~eL~~~i~e~~r~l~~a~~d~~l~~~~~~~~~~m~~~i~~ak~~~~d~~~~~~kLra~l~~~ee~~ 317 (604)
+.-.|...|++.|+++.-.+++.++..+..-- ..+...+....+.+...-.....+..+++-...+.-+-
T Consensus 74 ~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~----------~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~ 143 (225)
T COG1842 74 KAELALQAGNEDLAREALEEKQSLEDLAKALE----------AELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARK 143 (225)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999999998876554321 12333333333333333333445555566666665566
Q ss_pred HHHHhhhhHhhhhhcc
Q 007412 318 RSLKKQSTFLSQLAAK 333 (604)
Q Consensus 318 ~~~~~q~~~~~~laa~ 333 (604)
..++-+......++.-
T Consensus 144 ~~akA~~~v~~~~~~~ 159 (225)
T COG1842 144 AAAKAQEKVNRSLGGG 159 (225)
T ss_pred HHHHHHHHHHHHhcCC
Confidence 6666666665555543
No 41
>PRK15383 type III secretion system protein; Provisional
Probab=21.13 E-value=44 Score=35.41 Aligned_cols=67 Identities=15% Similarity=0.268 Sum_probs=37.0
Q ss_pred ccCCCchHHHHHHHHHHHHHHHhcccccCcCCCCCHHHHHHHHHHHHHHhh---ccccChHHHHHHHHHHH
Q 007412 243 KMKNKPDLQQELQSRLKESQRALGDTAADADLHHSVPEKIKLMGQVLSKAR---EQLYDCKLVTGKLRAML 310 (604)
Q Consensus 243 k~~~~~~l~~eL~~~i~e~~r~l~~a~~d~~l~~~~~~~~~~m~~~i~~ak---~~~~d~~~~~~kLra~l 310 (604)
-.+.++-|-.-+.+-+=|.||++|-. +|+|...+-.+...++|+--.-.| +..+|-+--.+||.++-
T Consensus 69 NTk~~PYL~NiinaA~IE~eR~IGv~-VDGdFs~~Qk~af~kLE~~yeNIkiIYr~dvdfSMYDkKLsdIY 138 (335)
T PRK15383 69 NTQKNPYLNNIINAAIIEKERIIGIF-VDGDFSKGQRKALGKLEQNYRNIKVIYNSDLNYSMYDKKLTTIY 138 (335)
T ss_pred ecCcCchHHHhhhHhhhccccEEEEE-EcCCcChhHHHHHHHHHHhhhcEEEEEeccCChhhhhhhHhHHH
Confidence 33445555555555566666666543 666665555555555554333222 23566666677776654
No 42
>PRK15382 non-LEE encoded effector protein NleB; Provisional
Probab=21.02 E-value=44 Score=35.37 Aligned_cols=70 Identities=17% Similarity=0.247 Sum_probs=42.2
Q ss_pred hhccCCCchHHHHHHHHHHHHHHHhcccccCcCCCCCHHHHHHHHHHHHHHhh---ccccChHHHHHHHHHHHH
Q 007412 241 IAKMKNKPDLQQELQSRLKESQRALGDTAADADLHHSVPEKIKLMGQVLSKAR---EQLYDCKLVTGKLRAMLQ 311 (604)
Q Consensus 241 iak~~~~~~l~~eL~~~i~e~~r~l~~a~~d~~l~~~~~~~~~~m~~~i~~ak---~~~~d~~~~~~kLra~l~ 311 (604)
|--.+.++-|-.-+.+-+=|.||++|-. +|+|...+-.+...++|+--.-.| +..+|-+--.+||.++-.
T Consensus 61 IiNTk~~PYL~NiinaA~IE~eR~IGv~-VDGdFs~~Qk~af~kLE~~~eNIkiIYr~dvdfSMYDkKLsdIY~ 133 (326)
T PRK15382 61 ILNTKEHPYLSNIINAAKIENERIIGVL-VDGDFTYEQKKEFLSLENEFQNIKIIYREDVDFSMYDKKLSDIYL 133 (326)
T ss_pred eeecCcCchHHHhhhHhhhccccEEEEE-EcCCcChhHHHHHHHHHHhhhcEEEEEeccCChhhhhhhHhHHHH
Confidence 3344555666666666666777777654 677766665555555555443332 345677777777777643
Done!