Query 007412
Match_columns 604
No_of_seqs 295 out of 1075
Neff 4.4
Searched_HMMs 29240
Date Tue Mar 26 01:10:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007412.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007412hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tzt_A Glycosyl transferase fa 100.0 3E-30 1E-34 260.1 12.5 177 371-596 5-189 (276)
2 1g9r_A Glycosyl transferase; a 100.0 3.4E-29 1.2E-33 254.9 12.3 178 372-596 1-184 (311)
3 1ll2_A Glycogenin-1; protein-s 99.6 7.9E-15 2.7E-19 151.9 10.3 151 370-592 3-155 (333)
4 3u2u_A Glycogenin-1, GN-1, GN1 99.4 9.3E-13 3.2E-17 133.0 9.0 76 486-593 82-157 (263)
5 3v1a_A Computational design, M 57.8 12 0.00043 28.9 4.3 39 227-265 5-43 (48)
6 1yzm_A FYVE-finger-containing 52.8 15 0.00052 28.7 4.1 39 227-265 6-44 (51)
7 1z0k_B FYVE-finger-containing 47.8 20 0.0007 29.6 4.3 41 226-266 23-63 (69)
8 1z0j_B FYVE-finger-containing 45.3 25 0.00085 28.3 4.3 40 227-266 13-52 (59)
9 2lk9_A Bone marrow stromal ant 33.2 21 0.00071 25.9 1.9 19 25-43 13-31 (35)
10 4e61_A Protein BIM1; EB1-like 25.3 82 0.0028 28.0 4.7 60 253-315 22-101 (106)
11 1o7q_A N-acetyllactosaminide a 21.9 33 0.0011 35.3 1.8 75 490-570 128-205 (289)
No 1
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=99.96 E-value=3e-30 Score=260.07 Aligned_cols=177 Identities=15% Similarity=0.136 Sum_probs=120.1
Q ss_pred ceeEEEEeC-Ccccc-ccceehhhhccCCCCceEEEEEeCCCchhhh---hhhhhcCCCCCcceeeecccchhhcccccc
Q 007412 371 LYHYALFSD-NVLAA-SVVVNSTIMNAKDSSKHVFHLVTDKLNFGAM---NMWFLLNPPGKAAIHVENVDEFKWLNSSYC 445 (604)
Q Consensus 371 liHIal~SD-NvLaa-sVvInSil~Nsk~P~~ivFHIVTD~in~~am---k~WF~~N~~~~A~VeV~nie~f~wL~~sy~ 445 (604)
.+|||+++| ||+.+ +|+|+|++.|+++ .+++|||++++++.... +.++.
T Consensus 5 ~i~I~~~~d~~Y~~~~~v~i~Sl~~~~~~-~~~~~~il~~~is~~~~~~L~~~~~------------------------- 58 (276)
T 3tzt_A 5 ADALLLTLDENYIPQMKVLMTSIYINNPG-RIFDVYLIHSRISEDKLKDLGEDLK------------------------- 58 (276)
T ss_dssp CEEEEEECCGGGHHHHHHHHHHHHHHSTT-CCEEEEEEESCCCHHHHHHHHHHHH-------------------------
T ss_pred eEEEEEEeCHhHHHHHHHHHHHHHHhCCC-CceEEEEEeCCCCHHHHHHHHHHHH-------------------------
Confidence 499999999 78664 5999999999986 57999999999875311 11110
Q ss_pred hhhhhhccCCcEEEEecCCCCCccccCcccccCCCCCCcchhhhHHhhhhhhcC-CCCeEEEEecceeEecCcHHHHhcC
Q 007412 446 PVLRQLESASMKEYYFKADHPTTLSSGASNLKYRNPKYLSMLNHLRFYLPQVYP-KLNKILFLDDDIVVQKDLTRLWSVD 524 (604)
Q Consensus 446 Pvlkqles~~~~~y~F~~~~~~~l~~~~~~~~~rnp~yiS~~~y~Rf~LPeLLP-~ldKVLYLD~DVIVqgDLseLw~iD 524 (604)
. .+..+..+.++.+... .++...++|..+|+||++|++|| +++||||||+|+||++||++||++|
T Consensus 59 ----~-~~~~i~~~~~~~~~~~---------~~~~~~~~s~~~~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~d 124 (276)
T 3tzt_A 59 ----K-FSYTLYPIRATDDLFS---------FAKVTDRYPKEMYYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLRTD 124 (276)
T ss_dssp ----T-TTCEEEEEECC----------------------CHHHHHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTCC
T ss_pred ----H-cCCEEEEEEeCHHHHh---------cCccccccCHHHHHHHHHHHHcccccCeEEEEeCCeeecCCHHHHhhcC
Confidence 0 0112233333321111 12234578999999999999999 5999999999999999999999999
Q ss_pred CCCCeEEEEeccCch-hhhhccccccCCccccccCCCCCCccccceeeeehHHHHhhChHHHHHHHHHHc-Ccc
Q 007412 525 LQGKVNGAVETCGES-FHRFDKYLNFTNPHIARSFDPNACGWAYGMNMFDLKEWKKKDITGIYHKWQNMV-GRI 596 (604)
Q Consensus 525 L~gkviAAVeDc~~~-f~r~~~yLnfS~P~I~~~fd~~~cYFNSGVLLiDL~kWRe~nIt~k~~~wle~n-dr~ 596 (604)
++|+++|||+||... +.++... .+++...||||||||||||++||+.++++++++|++.+ .+.
T Consensus 125 l~~~~~aav~d~~~~~~~~~~~~---------~~l~~~~~yfNsGV~linl~~~R~~~~~~~~~~~~~~~~~~~ 189 (276)
T 3tzt_A 125 ISDYILAAASHTGKTDMANNVNR---------IRLGTDTDYYNSGLLLINLKRAREEIDPDEIFSFVEDNHMNL 189 (276)
T ss_dssp CTTSSEEEEEC-----------------------------CEEEEEEEEEHHHHHHHCCHHHHHHHHHHC----
T ss_pred CCCCeEEEEEecccchHHHHHHH---------hcCCCCCCeEEeeEEEEEHHHHHhhhHHHHHHHHHHhccccc
Confidence 999999999999753 1111111 13444469999999999999999999999999999988 554
No 2
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=99.96 E-value=3.4e-29 Score=254.88 Aligned_cols=178 Identities=17% Similarity=0.269 Sum_probs=130.7
Q ss_pred eeEEEEeC-Cccc-cccceehh-hhccCCCCceEEEEEeCCCchhhhhhhhhcCCCCCcceeeecccchhhcccccchhh
Q 007412 372 YHYALFSD-NVLA-ASVVVNST-IMNAKDSSKHVFHLVTDKLNFGAMNMWFLLNPPGKAAIHVENVDEFKWLNSSYCPVL 448 (604)
Q Consensus 372 iHIal~SD-NvLa-asVvInSi-l~Nsk~P~~ivFHIVTD~in~~amk~WF~~N~~~~A~VeV~nie~f~wL~~sy~Pvl 448 (604)
||||+++| ||+. +.|+|+|+ +.|++ .+++|||++++++....+. ++.+...+
T Consensus 1 m~I~~~~d~~Y~~~~~vli~Sl~l~~~~--~~~~f~il~~~ls~~~~~~-------------------L~~~~~~~---- 55 (311)
T 1g9r_A 1 MDIVFAADDNYAAYLCVAAKSVEAAHPD--TEIRFHVLDAGISEANRAA-------------------VAANLRGG---- 55 (311)
T ss_dssp CEEEEEECGGGHHHHHHHHHHHHHTCTT--SCCEEEEEESSCCHHHHHH-------------------HHHHSGGG----
T ss_pred CeEEEECCHhHHHHHHHHHHHHHHHcCC--CCceEEEEECCCCHHHHHH-------------------HHHHHHHc----
Confidence 69999999 7865 56999999 99875 4799999999987532111 11000000
Q ss_pred hhhccCCcEEEEecCCCCCccccCcccccCCC-CCCcchhhhHHhhhhhhcCCCCeEEEEecceeEecCcHHHHhcCCCC
Q 007412 449 RQLESASMKEYYFKADHPTTLSSGASNLKYRN-PKYLSMLNHLRFYLPQVYPKLNKILFLDDDIVVQKDLTRLWSVDLQG 527 (604)
Q Consensus 449 kqles~~~~~y~F~~~~~~~l~~~~~~~~~rn-p~yiS~~~y~Rf~LPeLLP~ldKVLYLD~DVIVqgDLseLw~iDL~g 527 (604)
...+..+.++.+. + ..++. ..++|..+|+||++|++||+++||||||+|+||++||++||++||+|
T Consensus 56 ----~~~i~~~~~~~~~--------~-~~~~~~~~~~s~~~y~Rl~l~~ll~~~~kvlyLD~D~iv~~di~eL~~~~l~~ 122 (311)
T 1g9r_A 56 ----GGNIRFIDVNPED--------F-AGFPLNIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGD 122 (311)
T ss_dssp ----TTTEEEEECCGGG--------G-TTSCCCCTTCCGGGGGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCCCTT
T ss_pred ----CCEEEEEEcCHHH--------H-hcCccccccCCHHHHHHHHHHHHhhhcCEEEEEcCCeEeccCHHHHhccCCCC
Confidence 1122223222111 0 01222 46889999999999999999999999999999999999999999999
Q ss_pred CeEEEEeccCchh-hhhccccccCCccccccCCCCCCccccceeeeehHHHHhhChHHHHHHHHHHc-Ccc
Q 007412 528 KVNGAVETCGESF-HRFDKYLNFTNPHIARSFDPNACGWAYGMNMFDLKEWKKKDITGIYHKWQNMV-GRI 596 (604)
Q Consensus 528 kviAAVeDc~~~f-~r~~~yLnfS~P~I~~~fd~~~cYFNSGVLLiDL~kWRe~nIt~k~~~wle~n-dr~ 596 (604)
+++|||+||.... ..+...+ ++++..|||||||||||+++||+.++++++++|++.+ .+.
T Consensus 123 ~~~aav~d~~~~~~~~~~~~~---------~~~~~~~yfNsGv~linl~~~r~~~~~~~~~~~~~~~~~~~ 184 (311)
T 1g9r_A 123 NWLGASIDLFVERQEGYKQKI---------GMADGEYYFNAGVLLINLKKWRRHDIFKMSSEWVEQYKDVM 184 (311)
T ss_dssp CSEEEEECHHHHTSTTHHHHT---------TCCTTSCCEEEEEEEECHHHHTTSCHHHHHHHHHHHHTTTC
T ss_pred cEEEEEeccchhhhHHHHHhc---------CCCCCCceEeeeeeeeeHHHHHhcchHHHHHHHHHhccCcC
Confidence 9999999986421 1111111 4445678999999999999999999999999999987 553
No 3
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=99.55 E-value=7.9e-15 Score=151.93 Aligned_cols=151 Identities=11% Similarity=0.073 Sum_probs=94.9
Q ss_pred CceeEEEEeC-Ccccc-ccceehhhhccCCCCceEEEEEeCCCchhhhhhhhhcCCCCCcceeeecccchhhcccccchh
Q 007412 370 NLYHYALFSD-NVLAA-SVVVNSTIMNAKDSSKHVFHLVTDKLNFGAMNMWFLLNPPGKAAIHVENVDEFKWLNSSYCPV 447 (604)
Q Consensus 370 ~liHIal~SD-NvLaa-sVvInSil~Nsk~P~~ivFHIVTD~in~~amk~WF~~N~~~~A~VeV~nie~f~wL~~sy~Pv 447 (604)
...+|++++| +|+.+ .|++.|+..|+++ ..++| +++++++....+..-..
T Consensus 3 ~~a~vt~~~d~~Yl~~a~vl~~SL~~~~s~-~~l~v-lv~~~is~~~~~~L~~~-------------------------- 54 (333)
T 1ll2_A 3 DQAFVTLTTNDAYAKGALVLGSSLKQHRTS-RRLAV-LTTPQVSDTMRKALEIV-------------------------- 54 (333)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHHHTTCC-SEEEE-EECTTSCHHHHHHHHHH--------------------------
T ss_pred ceEEEEEEeCHHHHHHHHHHHHHHHHhCCC-CCEEE-EEcCCCCHHHHHHHHHh--------------------------
Confidence 4578899988 78765 5899999999875 35666 67777764321111100
Q ss_pred hhhhccCCcEEEEecCCCCCccccCcccccCCCCCCcchhhhHHhhhhhhcCCCCeEEEEecceeEecCcHHHHhcCCCC
Q 007412 448 LRQLESASMKEYYFKADHPTTLSSGASNLKYRNPKYLSMLNHLRFYLPQVYPKLNKILFLDDDIVVQKDLTRLWSVDLQG 527 (604)
Q Consensus 448 lkqles~~~~~y~F~~~~~~~l~~~~~~~~~rnp~yiS~~~y~Rf~LPeLLP~ldKVLYLD~DVIVqgDLseLw~iDL~g 527 (604)
...++.++.-... ...... .+.++ ....+|+||++|++ ++++||||||+|+||.+||++||+++
T Consensus 55 -------~~~v~~v~~l~~~--~~~~~~-~~~~~--~~~~t~~Kl~i~~l-~~ydrvlYLDaD~lv~~di~eLf~~~--- 118 (333)
T 1ll2_A 55 -------FDEVITVDILDSG--DSAHLT-LMKRP--ELGVTLTKLHCWSL-TQYSKCVFMDADTLVLANIDDLFERE--- 118 (333)
T ss_dssp -------CSEEEECCTTSTT--STTHHH-HHHCG--GGHHHHHHGGGGGC-TTCSEEEEECTTEEECSCCGGGGGSC---
T ss_pred -------CCEEEEEeecCCc--chhhcc-ccccc--chHHHHHHHHHhHh-cCCCeEEEEeCCEEeccCHHHHhCCC---
Confidence 0011111100000 000000 00011 24689999999995 78999999999999999999999997
Q ss_pred CeEEEEeccCchhhhhccccccCCccccccCCCCCCccccceeeeehHHHHhhChHHHHHHHHHH
Q 007412 528 KVNGAVETCGESFHRFDKYLNFTNPHIARSFDPNACGWAYGMNMFDLKEWKKKDITGIYHKWQNM 592 (604)
Q Consensus 528 kviAAVeDc~~~f~r~~~yLnfS~P~I~~~fd~~~cYFNSGVLLiDL~kWRe~nIt~k~~~wle~ 592 (604)
.+|||+|++ + .+||||||||||+.. ++.++++++++.
T Consensus 119 -~~aAv~d~~--------------------~---~~~fNsGvmlin~~~----~~~~~l~~~~~~ 155 (333)
T 1ll2_A 119 -ELSAAPDPG--------------------W---PDCFNSGVFVYQPSV----ETYNQLLHVASE 155 (333)
T ss_dssp -SSEEEECSS--------------------S---TTSEEEEEEEECCCH----HHHHHHHHHHHH
T ss_pred -ceeEEecCC--------------------C---CcceeeeEEEEeCCH----HHHHHHHHHHHh
Confidence 478888752 1 259999999997753 233455555543
No 4
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Probab=99.36 E-value=9.3e-13 Score=132.98 Aligned_cols=76 Identities=12% Similarity=0.163 Sum_probs=62.2
Q ss_pred hhhhHHhhhhhhcCCCCeEEEEecceeEecCcHHHHhcCCCCCeEEEEeccCchhhhhccccccCCccccccCCCCCCcc
Q 007412 486 MLNHLRFYLPQVYPKLNKILFLDDDIVVQKDLTRLWSVDLQGKVNGAVETCGESFHRFDKYLNFTNPHIARSFDPNACGW 565 (604)
Q Consensus 486 ~~~y~Rf~LPeLLP~ldKVLYLD~DVIVqgDLseLw~iDL~gkviAAVeDc~~~f~r~~~yLnfS~P~I~~~fd~~~cYF 565 (604)
..+|.|++++.+. +++||||||+|++|.+||++||++| .+|||+|.+ + .+||
T Consensus 82 ~~~~~kl~~~~l~-~~~~vlylD~D~~v~~~~~~Lf~~~----~~aA~~d~~--------------------~---~~~f 133 (263)
T 3u2u_A 82 GVTLTKLHCWSLT-QYSKCVFMDADTLVLANIDDLFDRE----ELSAAPDPG--------------------W---PDCF 133 (263)
T ss_dssp GGGGGGGGGGGCT-TCSEEEEECTTEEECSCCGGGGGSC----SSEEEECTT--------------------S---TTSE
T ss_pred hHHhHHHHhcccc-CcceEEEEcCCEeeccCHHHHhCCC----cceEeccCC--------------------C---Cccc
Confidence 4789999999976 5999999999999999999999997 478888752 1 2599
Q ss_pred ccceeeeehHHHHhhChHHHHHHHHHHc
Q 007412 566 AYGMNMFDLKEWKKKDITGIYHKWQNMV 593 (604)
Q Consensus 566 NSGVLLiDL~kWRe~nIt~k~~~wle~n 593 (604)
||||||||++. ++.++++++++.+
T Consensus 134 NsGv~li~p~~----~~~~~l~~~~~~~ 157 (263)
T 3u2u_A 134 NSGVFVYQPSV----ETYNQLLHLASEQ 157 (263)
T ss_dssp EEEEEEECCCH----HHHHHHHHHHHHH
T ss_pred cCeEEEEcccH----HHHHHHHHHHHhc
Confidence 99999999863 5566777766644
No 5
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=57.81 E-value=12 Score=28.89 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=35.4
Q ss_pred HHHhhHHHHHhhhhhhccCCCchHHHHHHHHHHHHHHHh
Q 007412 227 LMRDQMIMARVYLSIAKMKNKPDLQQELQSRLKESQRAL 265 (604)
Q Consensus 227 ~l~dQl~~AkaY~~iak~~~~~~l~~eL~~~i~e~~r~l 265 (604)
=|..|+++-+.|+.-|+..+...=+.-|..+++|+++-+
T Consensus 5 PL~EQ~~~I~~~I~qAk~~rRfdEV~~L~~NL~EL~~E~ 43 (48)
T 3v1a_A 5 PLAQQIKNIHSFIHQAKAAGRMDEVRTLQENLHQLMHEY 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999999999999999997654
No 6
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=52.85 E-value=15 Score=28.73 Aligned_cols=39 Identities=21% Similarity=0.230 Sum_probs=35.2
Q ss_pred HHHhhHHHHHhhhhhhccCCCchHHHHHHHHHHHHHHHh
Q 007412 227 LMRDQMIMARVYLSIAKMKNKPDLQQELQSRLKESQRAL 265 (604)
Q Consensus 227 ~l~dQl~~AkaY~~iak~~~~~~l~~eL~~~i~e~~r~l 265 (604)
=|..|+++-+.|+.-|+..+..+=+.-|..+++|+++-+
T Consensus 6 PL~EQ~~~I~~~I~qAk~~~r~DEV~~Le~NLrEL~~ei 44 (51)
T 1yzm_A 6 PLLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEY 44 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999987654
No 7
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=47.75 E-value=20 Score=29.62 Aligned_cols=41 Identities=20% Similarity=0.217 Sum_probs=36.9
Q ss_pred HHHHhhHHHHHhhhhhhccCCCchHHHHHHHHHHHHHHHhc
Q 007412 226 RLMRDQMIMARVYLSIAKMKNKPDLQQELQSRLKESQRALG 266 (604)
Q Consensus 226 r~l~dQl~~AkaY~~iak~~~~~~l~~eL~~~i~e~~r~l~ 266 (604)
.=|.+|+++-+.|+--|+..+..+=+.-|..+++|+++-+.
T Consensus 23 dPL~EQ~~~I~~yI~qAk~~~r~DEV~tLe~NLrEL~~ei~ 63 (69)
T 1z0k_B 23 DPLLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYD 63 (69)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999987543
No 8
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=45.27 E-value=25 Score=28.33 Aligned_cols=40 Identities=25% Similarity=0.280 Sum_probs=36.0
Q ss_pred HHHhhHHHHHhhhhhhccCCCchHHHHHHHHHHHHHHHhc
Q 007412 227 LMRDQMIMARVYLSIAKMKNKPDLQQELQSRLKESQRALG 266 (604)
Q Consensus 227 ~l~dQl~~AkaY~~iak~~~~~~l~~eL~~~i~e~~r~l~ 266 (604)
-|..|+++-+.|+--|+..+..+=+.-|..+++|++.-+.
T Consensus 13 pL~EQi~~I~~yI~qAk~~~R~DEV~~Le~NLrEL~~ei~ 52 (59)
T 1z0j_B 13 LLLQQIDNIKAYIFDAKQCGRLDEVEVLTENLRELKHTLA 52 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999999999999999999876553
No 9
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=33.20 E-value=21 Score=25.86 Aligned_cols=19 Identities=37% Similarity=0.539 Sum_probs=12.5
Q ss_pred hhHHHHHHhhhhhhhhccc
Q 007412 25 VLVIFFSVLAPLIFFVGRG 43 (604)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~ 43 (604)
++++.+.+..|||+|+-|.
T Consensus 13 ~LLviV~LgV~LI~f~~kA 31 (35)
T 2lk9_A 13 VLLIIVILGVPLIIFTIKK 31 (35)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHhcchheEEeeec
Confidence 4555667889999998775
No 10
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=25.29 E-value=82 Score=28.01 Aligned_cols=60 Identities=8% Similarity=0.113 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhcccccCcCCCCCHHHHHHHHHHHHHHhhcc--------------------ccChHHHHHHHHHHHHH
Q 007412 253 ELQSRLKESQRALGDTAADADLHHSVPEKIKLMGQVLSKAREQ--------------------LYDCKLVTGKLRAMLQT 312 (604)
Q Consensus 253 eL~~~i~e~~r~l~~a~~d~~l~~~~~~~~~~m~~~i~~ak~~--------------------~~d~~~~~~kLra~l~~ 312 (604)
+|.+++.++.-.+.......| +-..|++..|.++-.+.+. .-+-..+.+|+.++|++
T Consensus 22 ~L~~ei~eLk~~ve~lEkERD---FYF~KLRdIEiLcQe~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~kIq~ILYa 98 (106)
T 4e61_A 22 SLNEEIEQYKGTVSTLEIERE---FYFNKLRDIEILVHTTQDLINEGVYKFNDETITGHGNGNGGALLRFVKKVESILYA 98 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTTCCC--------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhccccccchhhcccccccchhHHHHHHHHHHHHhc
Confidence 455555555444444332222 3456788888888777552 11234678999999999
Q ss_pred HHH
Q 007412 313 ADE 315 (604)
Q Consensus 313 ~ee 315 (604)
|||
T Consensus 99 Tee 101 (106)
T 4e61_A 99 TAE 101 (106)
T ss_dssp HHH
T ss_pred ccc
Confidence 997
No 11
>1o7q_A N-acetyllactosaminide alpha-1,3- galactosyltransferase; 3-galactosyltransferase-UDP complex, glycosyltransferase, glycoprotein, transmembrane; HET: GAL NAG UDP; 1.3A {Bos taurus} SCOP: c.68.1.9 PDB: 1gwv_A* 1gx0_A* 1gww_A* 1k4v_A* 1gx4_A* 2jco_A 1g8o_A* 1fg5_N* 1g93_A* 2wgz_A* 1o7o_A* 2vs4_A* 2jck_A* 2jcl_A 2vfz_A* 2vs3_A* 1vzu_A* 1vzx_A* 1vzt_A* 2jcj_A* ...
Probab=21.93 E-value=33 Score=35.30 Aligned_cols=75 Identities=12% Similarity=0.084 Sum_probs=42.3
Q ss_pred HHhhhhhhcCCCCeEEEEecceeEecCcHHHHhcCCCCCeEEEEeccCchhh-hhccccccCCccccc--cCCCCCCccc
Q 007412 490 LRFYLPQVYPKLNKILFLDDDIVVQKDLTRLWSVDLQGKVNGAVETCGESFH-RFDKYLNFTNPHIAR--SFDPNACGWA 566 (604)
Q Consensus 490 ~Rf~LPeLLP~ldKVLYLD~DVIVqgDLseLw~iDL~gkviAAVeDc~~~f~-r~~~yLnfS~P~I~~--~fd~~~cYFN 566 (604)
.++-...++-++|-+.++|+|+++++++..= .| |..+|...--.-... ....|- .+|.-.. .++.+..|+.
T Consensus 128 ~~~~~~~~~~evDYLf~~dvd~~F~~~vG~E---~L-g~lv~~lHp~~y~~~~~~fpYE--Rrp~S~AyIp~~eGdfYY~ 201 (289)
T 1o7q_A 128 GEHIVAHIQHEVDFLFCMDVDQVFQDKFGVE---TL-GESVAQLQAWWYKADPNDFTYE--RRKESAAYIPFGEGDFYYH 201 (289)
T ss_dssp HHHHHHTHHHHCSEEEEECSSEEECSCBCGG---GC-SSEEEEECTTTTTSCGGGSCCC--CCTTSTTCCCTTCCSCCEE
T ss_pred HHHHHHHHhhcCCEEEEeeCCcEeeccCCHH---HH-HHHHHccCHHHhCCCCCCCCCC--CCcCceeeecCCCCCEEEE
Confidence 3333455676899999999999999988541 13 456666543211000 000110 1121111 4456678999
Q ss_pred ccee
Q 007412 567 YGMN 570 (604)
Q Consensus 567 SGVL 570 (604)
.|++
T Consensus 202 Ga~f 205 (289)
T 1o7q_A 202 AAIF 205 (289)
T ss_dssp EEEE
T ss_pred ceee
Confidence 9887
Done!