Query 007412
Match_columns 604
No_of_seqs 295 out of 1075
Neff 4.4
Searched_HMMs 13730
Date Tue Mar 26 01:10:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007412.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007412hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ga8a_ c.68.1.4 (A:) Galactos 100.0 3.6E-29 2.6E-33 246.1 13.4 180 372-596 1-184 (282)
2 d1ll2a_ c.68.1.14 (A:) Glycoge 99.6 1.7E-16 1.2E-20 153.6 8.8 80 482-589 77-156 (263)
3 d1lzia_ c.68.1.9 (A:) Glycosyl 60.2 3.1 0.00023 40.3 4.1 40 494-537 135-174 (283)
4 d1o7qa_ c.68.1.9 (A:) alpha-1, 50.4 6.3 0.00046 38.1 4.5 49 483-535 113-167 (287)
5 d1fo8a_ c.68.1.10 (A:) N-acety 29.3 47 0.0034 32.4 7.0 41 483-523 80-122 (343)
6 d1z0jb1 a.2.19.1 (B:734-784) F 21.3 54 0.0039 23.4 4.1 42 227-268 5-46 (51)
7 d1yzma1 a.2.19.1 (A:456-501) F 21.1 58 0.0042 23.2 4.3 39 228-266 4-42 (46)
8 d2gyqa1 a.25.1.4 (A:1-160) Hyp 14.3 2.3E+02 0.017 24.1 7.8 59 282-350 30-89 (160)
9 d1q08a_ a.6.1.3 (A:) Transcrip 11.9 3E+02 0.022 21.0 7.3 63 282-344 19-85 (94)
10 d1xrda1 f.3.1.1 (A:1-52) Light 10.3 62 0.0045 23.6 2.0 23 21-43 12-34 (52)
No 1
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]}
Probab=99.96 E-value=3.6e-29 Score=246.15 Aligned_cols=180 Identities=19% Similarity=0.255 Sum_probs=133.2
Q ss_pred eeEEEEeC-Cccc-cccceehhhhccCCCCceEEEEEeCCCchhhhhhhhhcCCCCCcceeeecccchhhcccccchhhh
Q 007412 372 YHYALFSD-NVLA-ASVVVNSTIMNAKDSSKHVFHLVTDKLNFGAMNMWFLLNPPGKAAIHVENVDEFKWLNSSYCPVLR 449 (604)
Q Consensus 372 iHIal~SD-NvLa-asVvInSil~Nsk~P~~ivFHIVTD~in~~amk~WF~~N~~~~A~VeV~nie~f~wL~~sy~Pvlk 449 (604)
||||+++| ||+. ++|+|+|++.|+++ .+++|||++++++....+..... + .
T Consensus 1 mnIv~~~D~nY~~~~~~~i~SL~~~~~~-~~~~~~il~~~~~~~~~~~l~~~------------------~-~------- 53 (282)
T d1ga8a_ 1 MDIVFAADDNYAAYLCVAAKSVEAAHPD-TEIRFHVLDAGISEANRAAVAAN------------------L-R------- 53 (282)
T ss_dssp CEEEEEECGGGHHHHHHHHHHHHHHCTT-SCCEEEEEESSCCHHHHHHHHHT------------------S-G-------
T ss_pred CEEEEECCHHHHHHHHHHHHHHHHHCcC-CCEEEEEEcCCCCHHHHHHHHHH------------------H-H-------
Confidence 69999999 7865 45999999998886 57999999999885321111100 0 0
Q ss_pred hhccCCcEEEEecCCCCCccccCcccccCCCCCCcchhhhHHhhhhhhcCCCCeEEEEecceeEecCcHHHHhcCCCCCe
Q 007412 450 QLESASMKEYYFKADHPTTLSSGASNLKYRNPKYLSMLNHLRFYLPQVYPKLNKILFLDDDIVVQKDLTRLWSVDLQGKV 529 (604)
Q Consensus 450 qles~~~~~y~F~~~~~~~l~~~~~~~~~rnp~yiS~~~y~Rf~LPeLLP~ldKVLYLD~DVIVqgDLseLw~iDL~gkv 529 (604)
.....+..+.++... ........+++|.++|+||++|++||+++||||||+|+||.+||++||++|+++++
T Consensus 54 -~~~~~i~~~~~~~~~--------~~~~~~~~~~~s~~~y~Rl~l~~~lp~~~kiiyLD~D~iv~~dl~~L~~~~~~~~~ 124 (282)
T d1ga8a_ 54 -GGGGNIRFIDVNPED--------FAGFPLNIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNW 124 (282)
T ss_dssp -GGTTTEEEEECCGGG--------GTTSCCCCTTCCGGGGGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCCCTTCS
T ss_pred -HcCCeEEEEECCchH--------hccccccccccCHHHHHHHHHhhhCCccceEEEecCCEEEecchHHHHhcccccce
Confidence 001223333332111 11011134688999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCchh-hhhccccccCCccccccCCCCCCccccceeeeehHHHHhhChHHHHHHHHHHc-Ccc
Q 007412 530 NGAVETCGESF-HRFDKYLNFTNPHIARSFDPNACGWAYGMNMFDLKEWKKKDITGIYHKWQNMV-GRI 596 (604)
Q Consensus 530 iAAVeDc~~~f-~r~~~yLnfS~P~I~~~fd~~~cYFNSGVLLiDL~kWRe~nIt~k~~~wle~n-dr~ 596 (604)
+|||.|+.... ..+...+ ++.+..+||||||||||+++||+.++++++++|++.+ ...
T Consensus 125 ~aa~~d~~~~~~~~~~~~~---------~~~~~~~yfNsGVml~n~~~~r~~~~~~~~~~~~~~~~~~~ 184 (282)
T d1ga8a_ 125 LGASIDLFVERQEGYKQKI---------GMADGEYYFNAGVLLINLKKWRRHDIFKMSSEWVEQYKDVM 184 (282)
T ss_dssp EEEEECHHHHTSTTHHHHT---------TCCTTSCCEEEEEEEECHHHHTTSCHHHHHHHHHHHHTTTC
T ss_pred eeeehhhhhhhhhhhHHHh---------CCCCCCceeecceeeechhhhhhhhHHHHHHHHHHhcccCc
Confidence 99999985321 1111111 4556689999999999999999999999999999988 543
No 2
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=99.63 E-value=1.7e-16 Score=153.62 Aligned_cols=80 Identities=11% Similarity=0.099 Sum_probs=68.2
Q ss_pred CCcchhhhHHhhhhhhcCCCCeEEEEecceeEecCcHHHHhcCCCCCeEEEEeccCchhhhhccccccCCccccccCCCC
Q 007412 482 KYLSMLNHLRFYLPQVYPKLNKILFLDDDIVVQKDLTRLWSVDLQGKVNGAVETCGESFHRFDKYLNFTNPHIARSFDPN 561 (604)
Q Consensus 482 ~yiS~~~y~Rf~LPeLLP~ldKVLYLD~DVIVqgDLseLw~iDL~gkviAAVeDc~~~f~r~~~yLnfS~P~I~~~fd~~ 561 (604)
..++.++|+||++++ +++++||||||+|+||.+||++||+.|. ++||.++..
T Consensus 77 ~~~~~~ty~Kl~i~~-l~~ydkvlYLDaD~lv~~~id~Lf~~~~----~~a~~~~~~----------------------- 128 (263)
T d1ll2a_ 77 RPELGVTLTKLHCWS-LTQYSKCVFMDADTLVLANIDDLFEREE----LSAAPDPGW----------------------- 128 (263)
T ss_dssp CGGGHHHHHHGGGGG-CTTCSEEEEECTTEEECSCCGGGGGSCS----SEEEECSSS-----------------------
T ss_pred cccchhhhHHHHHhh-hcccceEEEeCCCEEEecCHHHHhcCCc----cceeccCCC-----------------------
Confidence 356789999999999 5689999999999999999999999874 577776531
Q ss_pred CCccccceeeeehHHHHhhChHHHHHHH
Q 007412 562 ACGWAYGMNMFDLKEWKKKDITGIYHKW 589 (604)
Q Consensus 562 ~cYFNSGVLLiDL~kWRe~nIt~k~~~w 589 (604)
..|||+||||+|+++||.+++.+.+.+.
T Consensus 129 ~~~~nsGv~l~~p~~~~~~~i~~~~~~~ 156 (263)
T d1ll2a_ 129 PDCFNSGVFVYQPSVETYNQLLHVASEQ 156 (263)
T ss_dssp TTSEEEEEEEECCCHHHHHHHHHHHHHT
T ss_pred cccccCCcEEECccHHHHHHHHHHHHhh
Confidence 3589999999999999999998877654
No 3
>d1lzia_ c.68.1.9 (A:) Glycosyltransferase A catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=60.16 E-value=3.1 Score=40.33 Aligned_cols=40 Identities=10% Similarity=0.102 Sum_probs=29.7
Q ss_pred hhhhcCCCCeEEEEecceeEecCcHHHHhcCCCCCeEEEEeccC
Q 007412 494 LPQVYPKLNKILFLDDDIVVQKDLTRLWSVDLQGKVNGAVETCG 537 (604)
Q Consensus 494 LPeLLP~ldKVLYLD~DVIVqgDLseLw~iDL~gkviAAVeDc~ 537 (604)
.-+++-+.|-++|+|+|+++++.+.+= .| |..+|...-|.
T Consensus 135 ~~~~~~e~DyLf~~DaDm~f~~~vg~E---~L-~~lvgv~HP~~ 174 (283)
T d1lzia_ 135 ERRFLSEVDYLVCVDVDMEFRDHVGVE---IL-TPLFGTLHPGF 174 (283)
T ss_dssp HHHHHHHCSEEEEECSSEEECSCBCGG---GC-SSEEEEBCTTT
T ss_pred HHHhhhcCCEEEEeecceEEecccccE---Ee-cCeeeEecccc
Confidence 445566799999999999999998762 23 56677666553
No 4
>d1o7qa_ c.68.1.9 (A:) alpha-1,3-galactosyltransferase catalytic domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=50.39 E-value=6.3 Score=38.11 Aligned_cols=49 Identities=14% Similarity=0.276 Sum_probs=33.6
Q ss_pred CcchhhhHHhh------hhhhcCCCCeEEEEecceeEecCcHHHHhcCCCCCeEEEEec
Q 007412 483 YLSMLNHLRFY------LPQVYPKLNKILFLDDDIVVQKDLTRLWSVDLQGKVNGAVET 535 (604)
Q Consensus 483 yiS~~~y~Rf~------LPeLLP~ldKVLYLD~DVIVqgDLseLw~iDL~gkviAAVeD 535 (604)
.|...++.||- .-+++.+.|-++|+|+|+++++.+.. + .| |..+|...-
T Consensus 113 ~Wp~iTL~Rm~~i~~~i~~~~~~e~Dylf~~DaDm~f~~~vg~--E-~L-~~lv~~lHp 167 (287)
T d1o7qa_ 113 RWQDISMMRMKTIGEHIVAHIQHEVDFLFCMDVDQVFQDKFGV--E-TL-GESVAQLQA 167 (287)
T ss_dssp SHHHHHHHHHHHHHHHHHHTHHHHCSEEEEECSSEEECSCBCG--G-GC-SSEEEEECT
T ss_pred CCchhHHHHHHHHHHHHHHhhhccCCeEEEEeCCceEeccccc--c-cc-CCccceecc
Confidence 35666666663 45566689999999999999998875 1 23 345555443
No 5
>d1fo8a_ c.68.1.10 (A:) N-acetylglucosaminyltransferase I {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=29.29 E-value=47 Score=32.38 Aligned_cols=41 Identities=22% Similarity=0.493 Sum_probs=34.3
Q ss_pred CcchhhhHHhhhhhhcCC--CCeEEEEecceeEecCcHHHHhc
Q 007412 483 YLSMLNHLRFYLPQVYPK--LNKILFLDDDIVVQKDLTRLWSV 523 (604)
Q Consensus 483 yiS~~~y~Rf~LPeLLP~--ldKVLYLD~DVIVqgDLseLw~i 523 (604)
+..+..+++.-|-.+|.. ++++|.|.+|+++--|.-+.++.
T Consensus 80 n~giarhy~~AL~~~F~~~~~~~~IiLEDDl~~spdFf~y~~~ 122 (343)
T d1fo8a_ 80 YYKIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQA 122 (343)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSEEEEEETTEEECTTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcccCCceEEEEecCceeeHHHHHHHHH
Confidence 455677888999999985 58999999999999998876654
No 6
>d1z0jb1 a.2.19.1 (B:734-784) FYVE finger-containing Rab5 effector protein rabenosyn-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.33 E-value=54 Score=23.36 Aligned_cols=42 Identities=24% Similarity=0.271 Sum_probs=36.4
Q ss_pred HHHhhHHHHHhhhhhhccCCCchHHHHHHHHHHHHHHHhccc
Q 007412 227 LMRDQMIMARVYLSIAKMKNKPDLQQELQSRLKESQRALGDT 268 (604)
Q Consensus 227 ~l~dQl~~AkaY~~iak~~~~~~l~~eL~~~i~e~~r~l~~a 268 (604)
.|-.||---|||.-=||..|...=+.-|..+++|+++.|.+-
T Consensus 5 lllqqidnikayifdak~~gr~deve~ltenl~elk~tl~kq 46 (51)
T d1z0jb1 5 LLLQQIDNIKAYIFDAKQCGRLDEVEVLTENLRELKHTLAKQ 46 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHhcCchhHHHHHHHHHHHHHHHHHHh
Confidence 455677778999999999999999999999999999988653
No 7
>d1yzma1 a.2.19.1 (A:456-501) FYVE finger-containing Rab5 effector protein rabenosyn-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.13 E-value=58 Score=23.23 Aligned_cols=39 Identities=21% Similarity=0.250 Sum_probs=35.2
Q ss_pred HHhhHHHHHhhhhhhccCCCchHHHHHHHHHHHHHHHhc
Q 007412 228 MRDQMIMARVYLSIAKMKNKPDLQQELQSRLKESQRALG 266 (604)
Q Consensus 228 l~dQl~~AkaY~~iak~~~~~~l~~eL~~~i~e~~r~l~ 266 (604)
|-+||-.-|+|.-=||..+...=+.-|..+++|+++.+.
T Consensus 4 llqQi~~ik~yI~QAk~a~R~dEV~~Le~NLreLq~e~~ 42 (46)
T d1yzma1 4 LLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYD 42 (46)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999988664
No 8
>d2gyqa1 a.25.1.4 (A:1-160) Hypothetical ptotein RPA3308 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=14.30 E-value=2.3e+02 Score=24.13 Aligned_cols=59 Identities=20% Similarity=0.446 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhccCCCCcccchhhH-hhHHH
Q 007412 282 IKLMGQVLSKAREQLYDCKLVTGKLRAMLQTADEQVRSLKKQSTFLSQLAAKTIPNGIHCMSMR-LTIEY 350 (604)
Q Consensus 282 ~~~m~~~i~~ak~~~~d~~~~~~kLra~l~~~ee~~~~~~~q~~~~~~laa~~~Pk~lHCL~mr-Lt~ey 350 (604)
.+.|..+..+|. + ..+-..|.+.+..+++|+....+ .+..+.. =|.+.+|.+|+ |..|-
T Consensus 30 ~~al~~m~~~a~----~-peLk~~l~~H~~eT~~qi~rLe~---i~~~lg~--~p~~~~c~am~gli~e~ 89 (160)
T d2gyqa1 30 TKALPKMIEQAT----N-RDLSQGLTSHLEETQKQIERLDQ---VFKKLGQ--KPSGVNCPAIDGLIKEA 89 (160)
T ss_dssp HHHHHHHHHHCC----S-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHTC--CSCSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC----C-HHHHHHHHHHHHHHHHHHHHHHH---HHHHcCC--CCCCCccHHHHHHHHHH
Confidence 445555555543 3 77888999999999999866554 3455543 38999999998 76665
No 9
>d1q08a_ a.6.1.3 (A:) Transcriptional regulator ZntR {Escherichia coli [TaxId: 562]}
Probab=11.91 E-value=3e+02 Score=20.97 Aligned_cols=63 Identities=16% Similarity=0.316 Sum_probs=44.2
Q ss_pred HHHHHHHHHHh-hccccChHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhccC--CCC-cccchhh
Q 007412 282 IKLMGQVLSKA-REQLYDCKLVTGKLRAMLQTADEQVRSLKKQSTFLSQLAAKT--IPN-GIHCMSM 344 (604)
Q Consensus 282 ~~~m~~~i~~a-k~~~~d~~~~~~kLra~l~~~ee~~~~~~~q~~~~~~laa~~--~Pk-~lHCL~m 344 (604)
+..+..++.-. .....+|..+..-+..-+..+|+++.....-...|.+++..- -|. ..+|..+
T Consensus 19 L~EI~~ll~l~~~~~~~~c~~v~~l~~~kl~~i~~kI~~L~~l~~~L~~l~~~c~~~~~~~~~C~ii 85 (94)
T d1q08a_ 19 LESIRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAELQSMQRSLQRLNDACCGTAHSSVYCSIL 85 (94)
T ss_dssp HHHHHHHHHHHHCGGGCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSBGGGCHHH
T ss_pred HHHHHHHHHhccCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCcch
Confidence 44455555432 223467998888889999999999999999888888887752 233 3468654
No 10
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=10.31 E-value=62 Score=23.58 Aligned_cols=23 Identities=35% Similarity=0.389 Sum_probs=18.5
Q ss_pred ccchhhHHHHHHhhhhhhhhccc
Q 007412 21 RLPIVLVIFFSVLAPLIFFVGRG 43 (604)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~ 43 (604)
|.-+++.+|+.+||-+|+|+-=+
T Consensus 12 r~lva~~~fL~~LAl~IHfiLLS 34 (52)
T d1xrda1 12 QALVGLATFLFVLALLIHFILLS 34 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 44578889999999999997533
Done!