BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007413
(604 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q00004|SRP68_CANFA Signal recognition particle 68 kDa protein OS=Canis familiaris
GN=SRP68 PE=1 SV=1
Length = 622
Score = 311 bits (798), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 204/602 (33%), Positives = 323/602 (53%), Gaps = 53/602 (8%)
Query: 22 QIGPKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLYKSLKFTHG-RGKYTRKA 80
+ G S+ +LQ++K +Q QHGLRHGD+ RYR YC+ R RRL K+L F G R K+T K
Sbjct: 50 EFGDSLSLEILQIIKESQQQHGLRHGDFQRYRGYCSRRQRRLRKTLNFKMGNRHKFTGKK 109
Query: 81 ITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQRIYLIGRLRKAVKWATLFSN 140
+TE +T+ R+L LVL AERAWS+AM+ +Q + R+R +L+ RLRKAVK A
Sbjct: 110 VTEDLLTDNRYLLLVLMDAERAWSYAMQLKQEANT-EPRKRFHLLSRLRKAVKHAEELER 168
Query: 141 LC-AIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELGKYGDVENQ 199
LC + + D +T LEA+AY +Y+ G L FE Q W+ A++ F + +YE+L E
Sbjct: 169 LCESNRVDAKTKLEAQAYTAYLSGMLRFEH-QEWKAAIEAFNKCKTIYEKLASAFTEEQA 227
Query: 200 VLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALDLFKSKLEAVMAEARSQQ 259
VL +RVEE+ P+IRYC + IG+ + +EL+Q+ G L KLEA++ + R++Q
Sbjct: 228 VLYNQRVEEISPNIRYCAYNIGDQSA-INELMQMRLRSGGTEGLLAEKLEALITQTRAKQ 286
Query: 260 AASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSLPAEKKLVIFDKIFTAYH 319
AA+++E W G P+ K R+ +L + E + A + E K +F+ + +
Sbjct: 287 AATMSEVEWRGRTVPVKIDKVRIFLLGLADNEAAI----AQAESEETKERLFESMLSECR 342
Query: 320 EARGCIRSDL------------ASAGNAENVKDDLFGLDKAVSAVLGQRTIERNQLLVSI 367
+A +R +L +G N++ L ++ + I RN+ +
Sbjct: 343 DAIQAVREELKPDQKQRDYTLDGESGKVSNLQ----YLHSYLTYIKLSTAIRRNENMAKG 398
Query: 368 VKGKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELK 427
++ L +Q +D++ + +P++L+RLYD++LQN +L L G E E+ F +E LK
Sbjct: 399 LQKALQQQPEDESKRSPRPQDLIRLYDIILQNLVELLQL--PGLE---EDRAFQKEIGLK 453
Query: 428 SLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQMMIEELKTL 487
+L F+A RCF++A+SY L K +EA LY R +A D NS + + +++ L
Sbjct: 454 TLVFKAYRCFFIAQSYVLVKKWSEALVLYDRVLKYANEVNSDAGAFRNSLKDL-PDVQEL 512
Query: 488 CKECRSNSCIEHAKGIMVEEKASENLSNKISTVSISGTGKKSFQV--DKFLLEKLDVYES 545
+ RS C A I+ S S + S QV +K L+E+ + +
Sbjct: 513 ITQVRSEKCSLQAAAIL--------------DASDSHQPETSSQVKDNKPLVERFETF-- 556
Query: 546 AVGDSNVKGAARIEAFPPAFQSIARNPIVLDLAYNFIDFPSLENRMKKDRK----GFISR 601
+ S V A + FPP FQ I P+ DLA N + FP LE+++++ K G+I
Sbjct: 557 CLDPSLVTKQANLVHFPPGFQPIPCKPLFFDLALNHVAFPPLEDKLEQKTKSGLTGYIKG 616
Query: 602 LW 603
++
Sbjct: 617 IF 618
>sp|Q9UHB9|SRP68_HUMAN Signal recognition particle 68 kDa protein OS=Homo sapiens GN=SRP68
PE=1 SV=2
Length = 627
Score = 308 bits (790), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 202/601 (33%), Positives = 322/601 (53%), Gaps = 49/601 (8%)
Query: 22 QIGPKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLYKSLKFTHG-RGKYTRKA 80
+ G S+ +LQ++K +Q QHGLRHGD+ RYR YC+ R RRL K+L F G R K+T K
Sbjct: 53 EFGDSLSLEILQIIKESQQQHGLRHGDFQRYRGYCSRRQRRLRKTLNFKMGNRHKFTGKK 112
Query: 81 ITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQRIYLIGRLRKAVKWATLFSN 140
+TE +T+ R+L LVL AERAWS+AM+ +Q + R+R +L+ RLRKAVK A
Sbjct: 113 VTEELLTDNRYLLLVLMDAERAWSYAMQLKQEANT-EPRKRFHLLSRLRKAVKHAEELER 171
Query: 141 LC-AIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELGKYGDVENQ 199
LC + + D +T LEA+AY +Y+ G L FE Q W+ A++ F + +YE+L E
Sbjct: 172 LCESNRVDAKTKLEAQAYTAYLSGMLRFEH-QEWKAAIEAFNKCKTIYEKLASAFTEEQA 230
Query: 200 VLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALDLFKSKLEAVMAEARSQQ 259
VL +RVEE+ P+IRYC + IG+ + +EL+Q+ G L KLEA++ + R++Q
Sbjct: 231 VLYNQRVEEISPNIRYCAYNIGDQSA-INELMQMRLRSGGTEGLLAEKLEALITQTRAKQ 289
Query: 260 AASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSLPAEKKLVIFDKIFTAYH 319
AA+++E W G P+ K R+ +L + E + V+A E K +F+ + +
Sbjct: 290 AATMSEVEWRGRTVPVKIDKVRIFLLGLADNEAAI-VQAESE---ETKERLFESMLSECR 345
Query: 320 EARGCIRSDL------------ASAGNAENVKDDLFGLDKAVSAVLGQRTIERNQLLV-S 366
+A +R +L G N++ L ++ + I+RN+ +
Sbjct: 346 DAIQVVREELKPDQKQRDYILEGEPGKVSNLQ----YLHSYLTYIKLSTAIKRNENMAKG 401
Query: 367 IVKGKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECEL 426
+ + L +Q +D + + +P++L+RLYD++LQN +L L G E E+ F +E L
Sbjct: 402 LQRALLQQQPEDDSKRSPRPQDLIRLYDIILQNLVELLQL--PGLE---EDKAFQKEIGL 456
Query: 427 KSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQMMIEELKT 486
K+L F+A RCF++A+SY L K +EA LY R +A D NS + + +++
Sbjct: 457 KTLVFKAYRCFFIAQSYVLVKKWSEALVLYDRVLKYANEVNSDAGAFKNSLKDL-PDVQE 515
Query: 487 LCKECRSNSCIEHAKGIMVEEKASENLSNKISTVSISGTGKKSFQVDKFLLEKLDVYESA 546
L + RS C A I+ A + + T + +K L+E+ + +
Sbjct: 516 LITQVRSEKCSLQAAAILDANDAHQ-----------TETSSSQVKDNKPLVERFETF--C 562
Query: 547 VGDSNVKGAARIEAFPPAFQSIARNPIVLDLAYNFIDFPSLENRMKKDRK----GFISRL 602
+ S V A + FPP FQ I P+ DLA N + FP LE+++++ K G+I +
Sbjct: 563 LDPSLVTKQANLVHFPPGFQPIPCKPLFFDLALNHVAFPPLEDKLEQKTKSGLTGYIKGI 622
Query: 603 W 603
+
Sbjct: 623 F 623
>sp|Q8BMA6|SRP68_MOUSE Signal recognition particle 68 kDa protein OS=Mus musculus GN=Srp68
PE=2 SV=2
Length = 625
Score = 306 bits (783), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 206/607 (33%), Positives = 328/607 (54%), Gaps = 62/607 (10%)
Query: 22 QIGPKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLYKSLKFTHG-RGKYTRKA 80
+ G S+ +LQ++K +Q QHGLRHGD+ RYR YC+ R RRL K+L F G R K+T K
Sbjct: 52 EFGDSLSLEILQIIKESQQQHGLRHGDFQRYRGYCSRRQRRLRKTLNFKMGNRHKFTGKK 111
Query: 81 ITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQRIYLIGRLRKAVKWATLFSN 140
+TE +T+ R+L LVL AERAWS+AM+ +Q + R+R +L+ RLRKAVK A
Sbjct: 112 VTEELLTDNRYLLLVLMDAERAWSYAMQLKQEANT-EPRKRFHLLSRLRKAVKHAEELER 170
Query: 141 LC-AIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELGKYGDVENQ 199
LC + + D +T LEA+AY +Y+ G L FE Q W++A++ F + +YE+L E
Sbjct: 171 LCESNRVDAKTKLEAQAYTAYLSGMLRFEH-QEWKSAIEAFNKCKTIYEKLASAFTEEQA 229
Query: 200 VLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALDLFKSKLEAVMAEARSQQ 259
VL +RVEE+ P+IRYC + IG+ + +EL+Q+ G L KLEA++ + R++Q
Sbjct: 230 VLYNQRVEEISPNIRYCAYNIGDQSA-INELMQMRLRSGGTEGLLAEKLEALITQTRAKQ 288
Query: 260 AASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSLPAEKKLVIFDKIFTAYH 319
AA+++E W G P+ K R+ +L + E + V+A E K +F+ + +
Sbjct: 289 AATMSEVEWRGRTVPVKIDKVRIFLLGLADNEAAI-VQAESE---ETKERLFESMLSECR 344
Query: 320 EARGCIRSDLAS-------AGNAENVK-DDLFGLDKAVSAVLGQRTIERNQLLV-SIVKG 370
+A +R +L A + E+ K +L L ++ + I RN+ + + +
Sbjct: 345 DALQAVREELKPDQKQRDYALDGESGKVSNLQYLHSYLTYIKLSTAIRRNENMAKGLHRA 404
Query: 371 KLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLA 430
L +Q +D + + +P++L+RLYD++LQN +L L G E E+ F +E LK+L
Sbjct: 405 LLQQQPEDDSKRSPRPQDLIRLYDIILQNLVELLQL--PGLE---EDRTFQKEISLKTLV 459
Query: 431 FRAERCFYLARSYSLAGKRTEAYALYCRARSHA----------ENALKDFQRMANSDQMM 480
F+A RCF++A+SY L K +EA LY R +A +N+LKD
Sbjct: 460 FKAYRCFFIAQSYVLVKKWSEALVLYDRVLKYANEVSSHGGASKNSLKD----------- 508
Query: 481 IEELKTLCKECRSNSCIEHAKGIMVEEKASENLSNKISTVSISGTGKKSFQVDKFLLEKL 540
+ +++ L + RS C A I+ N S++ T S + + L+E+
Sbjct: 509 LPDVQELITQVRSEKCSLQAAAIL-----DANDSHQTDTSS-------QVKDNTPLVERF 556
Query: 541 DVYESAVGDSNVKGAARIEAFPPAFQSIARNPIVLDLAYNFIDFPSLENRMKKDRK---- 596
+ + + S V A + FPP FQ I P+ DLA N + FP LE+++++ K
Sbjct: 557 ESF--CLDPSLVTKQANLVHFPPGFQPIPCKPLFFDLALNHVAFPPLEDKLEQKTKSGLT 614
Query: 597 GFISRLW 603
G+I ++
Sbjct: 615 GYIKGIF 621
>sp|Q9VSS2|SRP68_DROME Signal recognition particle 68 kDa protein OS=Drosophila
melanogaster GN=Srp68 PE=2 SV=1
Length = 604
Score = 257 bits (657), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 190/601 (31%), Positives = 309/601 (51%), Gaps = 65/601 (10%)
Query: 27 FSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLYKSLKFTHG-RGKYTRKAITEST 85
F++ +L ++K AQ QHGLRHGD+ RYR YC+ R+RRL K+LK+ G + + R+ +T
Sbjct: 29 FTVEILHMIKDAQQQHGLRHGDFQRYRGYCSRRIRRLRKALKYPQGDKRHFKRRDVTIGQ 88
Query: 86 VT----EVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQRIYLIGRLRKAVKWATLFSNL 141
+T + RF+H+ L AERAW++AM+ +Q R+R +L+ +LR+A +A L
Sbjct: 89 LTGKKADERFIHIPLICAERAWAYAMQLKQ-ESNTEPRKRFHLVNKLRRACFYALQLQEL 147
Query: 142 CAIKA-DPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELGKYGDVENQV 200
C +A D RT LE EAY ++M G L FE Q W+TA ++ K A+ VYE LGK + Q
Sbjct: 148 CNTEAFDARTKLECEAYVAWMHGTLHFEL-QLWKTAGEHLKRAQVVYENLGKALPEDEQE 206
Query: 201 LCRERVEELEPSIRYCLHKI--GESNVKTSELLQI---GEMEGPALDLFKSKLEAVMAEA 255
L R +V E P++RYC + I G S K E+L++ G +E L+ ++++
Sbjct: 207 LYRAKVNEFTPNLRYCAYNISGGASGGKIDEILELRAQGVLEN---------LDVLVSQT 257
Query: 256 RSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSLPAEKKLVIFDKIF 315
+++ + L W G + + K R+ +L AQEL+K L A + + K+ + ++I
Sbjct: 258 KTESSEGLQTIDWRGRKVTVRPEKVRLFLLSAQELDKSL----AKTTKQDAKIELIERIL 313
Query: 316 TAYHEARGCIRSD------LASAGNAENVKDDLFGLDKAVSAVLGQRTIERNQLLVSIVK 369
+A +R + L S + V + L +S + RT++RN LV K
Sbjct: 314 MDCKDAIQAVRDEIKQDPKLRSLTTGQTVSGVQYLL-AYLSYIRHSRTLQRNLCLVEQAK 372
Query: 370 -----GKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEEC 424
L Q++ GK +P++L RLY+++LQN ++ + +G E ++ + E
Sbjct: 373 LNFYDPNLQSQQNVGDGKRVRPQDLARLYEIILQNVTEMQQI--NGLE---DDATYQSEV 427
Query: 425 ELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQMMIEEL 484
E ++ F+A RC+Y+A + K EA ALY RA ++A ALK ++ + + EEL
Sbjct: 428 ENLAITFKAFRCYYIALTLIDIKKWKEAVALYERASNYATEALKG---KSSPEFQLQEEL 484
Query: 485 KTLCKECRSNSCIEHAKGIMVEEKASENLSNKISTVSISGTGKKSFQVDKFLLEKLDVYE 544
K + HA ++ ++ + E SGT KS + K L E+L +Y+
Sbjct: 485 KKVVSAIDGCKFSAHAYSVLEDDNSEE-----------SGTTTKSQKTTKPLYERLSLYK 533
Query: 545 SAVGDSNVKGAARIEAFPPAFQSIARNPIVLDLAYNFIDFPSLENRMKKDRK------GF 598
S A + P + I PI DLA +++ PSLE +++ K GF
Sbjct: 534 E--DQSLHTKAPNVFKLTPDMEPIPCKPIFFDLAMTYVELPSLEGKLESPGKKGASITGF 591
Query: 599 I 599
+
Sbjct: 592 V 592
>sp|Q20822|SRP68_CAEEL Probable signal recognition particle 68 kDa protein
OS=Caenorhabditis elegans GN=F55C5.8 PE=3 SV=2
Length = 622
Score = 200 bits (508), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 166/597 (27%), Positives = 304/597 (50%), Gaps = 53/597 (8%)
Query: 20 SDQIGPKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLYKSLKFTHGRG----- 74
++++ P ++++LQ++K AQ QHGLRHGDY RYR+YC A+L R+ K+LKFT+
Sbjct: 11 TEELPPFPTVHILQVVKDAQQQHGLRHGDYARYRKYCAAKLERMRKALKFTNSHNCQKKR 70
Query: 75 --KYTRKAITESTVTEVRFLHLVLYTAERAWSHAM-EKRQLPDGP-NARQRIYLIGRLRK 130
K+ +K ++ +V V+FL+ ++ +ER ++ AM +K L D P +R++ +I LRK
Sbjct: 71 KAKFVKKWLSVESVQNVQFLNFGIFESERRYAEAMIDKITLEDNPEKSRKKFSMINSLRK 130
Query: 131 AVKWATLFSNLC--AIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYE 188
AV AT + + + D T LEA+AYA++M+G FE +NW+ A ++ K A+ VYE
Sbjct: 131 AVLHATNLEKIVQESERFDAPTKLEAQAYAAWMRGMCSFE-SRNWQKASESLKLAKTVYE 189
Query: 189 ELGK-YGDVENQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALDLFKSK 247
+L + + + + R E++P +R C I ES + ++ E+ + S
Sbjct: 190 KLAEATNNTTLSSIFKGRCREIQPQLRLCEFNIAESPGAVGTMTELMELRMQMGEGGDSS 249
Query: 248 LEAVMAEAR-SQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSLPAEK 306
++ +++E R S +A + W G + + + K + + + ++ E V+ A ++
Sbjct: 250 VDKLISEMRASATSAEVVTIEWGGAKSTVDDEKAKQVVQEWKQTE----VELAQCQTPKE 305
Query: 307 KLVIFDKIFTAYHEARGCIRSDLASAGNAENVKDDLFGLDKAVSAVLGQRTIERNQLLVS 366
K+ +F+K +A I SD+ ++EN + KA L L +
Sbjct: 306 KMALFEKATADTRDAIDRI-SDIIRRKSSENADTTVLQSIKAYLEFLKMNGTASRYLAII 364
Query: 367 IVKGKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECEL 426
+ K+ K +KP++L+RLYD +++ +++++ + ++ + E+
Sbjct: 365 ---------DNTKSEKKSKPQDLLRLYDSVIEIYKEVAEIPGADHDK-----NLIQAFEV 410
Query: 427 KSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQMMIEELKT 486
K +RA RCFY+A SYS K +EA AL+ R S ++A +++ +S + E ++
Sbjct: 411 KVEYYRAFRCFYMASSYSALHKYSEAAALFDRTVSRVQDAEGKLKKLKSS-SFITNETQS 469
Query: 487 LCKECRSNSCIEHAKGIMVEEKASENLSNKISTVSISGTGKKSFQVDKF-----LLEKLD 541
E RS +E AK V +A+ S +G K ++ K LLE ++
Sbjct: 470 SLNELRSE--VESAK---VTVRAAR-------LASAAGDVKTDSELAKIIDKRPLLETVN 517
Query: 542 VYESAVGDSNVKGAARIE--AFPPAFQSIARNPIVLDLAYNFIDFPSLENRMKKDRK 596
+ +++K I + PPAF + PI DLA + P++++R++K +K
Sbjct: 518 EWRQWDVRNSLKDKKTIPVASLPPAFIPMPNKPIFFDLANFHLTMPNVDDRLEKLQK 574
>sp|Q1ZXE8|SRP68_DICDI Signal recognition particle subunit SRP68 OS=Dictyostelium
discoideum GN=srp68 PE=3 SV=1
Length = 614
Score = 173 bits (439), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 161/640 (25%), Positives = 299/640 (46%), Gaps = 74/640 (11%)
Query: 1 MAKNSETSAMEIDDKKSINSDQIGPKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARL 60
MA N TS E D KF +++L +++Q+Q GLR DY +YR+YC+ R+
Sbjct: 1 MATNISTSPKE---------DVPKEKFHLDILNFSQTSQIQFGLRLQDYKKYRQYCSKRI 51
Query: 61 RRLYKSLKFTHGRGKYTRKAI-----TESTVTEVRFLHLVLYTAERAWSHAME-KRQLPD 114
+RL L+ +G+ Y K + TE + +VR+L + L ERAWS+AM+ K Q
Sbjct: 52 QRLRSQLRKQYGKKNYVNKIVLNGGETEKQINDVRYLQISLLKTERAWSYAMDLKAQFEK 111
Query: 115 GPNARQRIYLIGRLRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWE 174
++R ++ R KA + +T LC + AD T +EA AY+S+M +L + Q+++
Sbjct: 112 DNDSRIGFHMNRRFGKASRNSTQLYELCKLVADQYTIIEAHAYSSWMASSLSLTK-QDFK 170
Query: 175 TALKNFKSARAVYEELGKYGDVENQVLCRERVEELEPSIRYCLHKI----GESNVKTSEL 230
AL+ ++ +YE+L + GD + L ++R+EE EP IR+CL+ + SN +
Sbjct: 171 KALEEINISKTIYEKLSEQGDHSQKELYQKRIEETEPIIRFCLYNLKNEKNTSNKVSQNT 230
Query: 231 LQIGEMEGPALDLFKSKLEAVMAEARSQQAASLTEF--------HWLGHRFPISNAKTRV 282
L I E L ++K ++ + + A + E+ L + I N +
Sbjct: 231 LTIIEQSLEELKNQENKKKSSTSSTTTTTATTTIEWKSKSIKVDEKLDEKLKIFNEFKKE 290
Query: 283 AILKAQELEKDLHVKAADSLPAEKKLVIFDKIFTAYHEARGCIRSDLASAGNAENVKDDL 342
+L K+++ + I+DK+ +++DL++ N+K+
Sbjct: 291 ---NENKLPKNINASIDTTSNISPIFNIYDKLVYNLINCETIVKNDLSTLVRV-NLKN-- 344
Query: 343 FGLDKAVSAVLGQRTI----------------ERNQLLVSIVKGKLTKQRDDKTGKVTKP 386
K+V + + +++ ERN +L+++++ L ++ D++ + K
Sbjct: 345 ----KSVKSEIEEQSTRILLAYIMYHKMKYLYERNSILITMMQRVLDGEKVDESA-IKKK 399
Query: 387 EELVRLYDLLLQNTADLSDLVSSGRERKPEEVK-FAEECELKSLAFRAERCFYLARSYSL 445
+ V DL+ +T + R + K A + + + + ++ R +Y+A +
Sbjct: 400 VKKVTWNDLVRLSTHQVKVYTIMSESRDTDSNKEIARDQDAQLILLKSIRLYYIAVCLAK 459
Query: 446 AGKRTEAYALYCRARSHAENALKDFQRMANSDQMMI----EELKTLCKECRSNSCIEHAK 501
+ K +E A+ R ++ +N R N+ I EL++ K+ RS HA
Sbjct: 460 SLKFSETMAVLDRVLTNIQNV-----RKTNTKNQQILNDTNELESNIKKQRSQI---HAN 511
Query: 502 GIMVEEKASENLSNKISTVSISGTGKKSFQVDKFLLEKLDVYESAVGDSNVKGAARIEAF 561
+ + +++L N++S++SI G S + + L+ LD + D++ ++
Sbjct: 512 SFIQQLSENQDLKNQMSSLSIGGITTASGKSND-LISGLDSF-----DTSFLTEKKLVQL 565
Query: 562 PPAFQSIARNPIVLDLAYNFIDFPSLENRMKKDRKGFISR 601
PP Q + PI DLA+N + FPSL+ R K G S+
Sbjct: 566 PPQLQPVQAKPIFFDLAFNSVTFPSLDQRKKGSSTGTPSK 605
>sp|O74436|SRP68_SCHPO Signal recognition particle subunit srp68 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=srp68 PE=3 SV=1
Length = 597
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 101/214 (47%), Gaps = 28/214 (13%)
Query: 31 VLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLYKSLKFTHGRGKYTRKAITESTVTEVR 90
+ LL A+ H +Y +Y + R+ L KSL T GK +S+V + R
Sbjct: 61 IFPLLLEARSDHFYEGNEYIKY---LSHRIHGLRKSLHITQRGGK------PKSSVDK-R 110
Query: 91 FLHLVLYTAERAWSHAMEKRQLPDGPNARQRIYLIGRLRKAVKWA---TLFSNLCAIKAD 147
+ ++L+ A+RA+ + R + QR + + RL++A ++ F+N D
Sbjct: 111 YAEILLFNADRAFQQFVFLR-------SSQRRHALRRLKRADQFGKELVSFTNAFDCN-D 162
Query: 148 PRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELGKYGDV----ENQVLCR 203
LEA A+A Y++G L +E+ ++WE +L F +R + L D E VL
Sbjct: 163 HIFYLEAIAFAKYIEGTLNYEK-RDWEGSLSAFSISRLSFLVLQNKIDTLAEHEKSVLG- 220
Query: 204 ERVEELEPSIRYCLHKIGESN-VKTSELLQIGEM 236
E +++ ++RY + G N K+ ++L + +
Sbjct: 221 ELQNQIDSNLRYVAQRTGLQNQTKSLDILMLSSI 254
>sp|Q6BMV4|SRP68_DEBHA Signal recognition particle subunit SRP68 OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=SRP68 PE=3 SV=1
Length = 587
Score = 41.6 bits (96), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 110/523 (21%), Positives = 210/523 (40%), Gaps = 71/523 (13%)
Query: 94 LVLYTAERAWSHAMEKRQLPDGPNARQRIY---LIGRLRKAVKWATLFSNLCAIKADPRT 150
L+L TAER ++ E + L + N Y +I R++K++ + + + D
Sbjct: 62 LLLLTAERDSLYSSEIKSLLEISNDNASSYRNLMISRIKKSLSSSKKLLEITVNEKDEYK 121
Query: 151 SLEAEAYASYMKGNLLFEQDQNWETALKNFKSARA----VYEELGKYGDVENQ------- 199
+E YA+ ++GNL + Q W AL F A+ +Y + D+E +
Sbjct: 122 RIEYYTYAALIQGNLSVNKKQ-WSKALNAFSIAKCALDFLYSQEDSKMDIEEEQEESTQF 180
Query: 200 --VLCRERVEEL-EPSIRYCLHKIGESNVKTSELLQIGEME--GPALDLFKSKLEAVM-- 252
L E E L +PS+ + + + T++L + L + +E +
Sbjct: 181 KKTLISEITETLVDPSLALAISQDDTAYSTTTDLKTVSRQHCRDNKLSYLQPVIEIIARI 240
Query: 253 -AEARSQQAAS---LTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSLPAEKKL 308
EA S+ ++S + W H + N + I+K L D + A +
Sbjct: 241 DPEAVSEVSSSTELIKSVQWRDHEATLYNDELAYKIMK---LTNDNETNWKNFNDANQ-- 295
Query: 309 VIFDKIFTAYHEARGCIRSDL---ASAGNAENVKDDLFGLDKAVSAVLGQRTIERNQLLV 365
FD + + + E +D+ + E V+D L +L R ++R+ L++
Sbjct: 296 --FDVLLSGWSELLEIHTNDMDKNKDEDDLEKVQDRAIVLTYINFNLLFTR-LKRDLLII 352
Query: 366 SIVKGKLTKQRDDKTG--KVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEE 423
+L+ Q D+ K+ ++++RLY ++ T ++ DL + E
Sbjct: 353 ----DQLSSQGDNVFALKKLEFNKDIIRLYGTIITTTQEIKDLPGVYNDEDLHE------ 402
Query: 424 CELKSLA--FRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQMMI 481
L +L F A++ LARS++L K EA ++ H +N L ++SD
Sbjct: 403 -SLDNLEKFFVAKKSAVLARSFALNNKFPEALKIF----DHVDNTL------SSSDNKFY 451
Query: 482 EELKTLCKECRSNSCIEHAKGIMVEEKASENLSNKISTVSISGTGKKSFQVDKFLLEKLD 541
++ SN E K +E S+ L +I S K+ F++E ++
Sbjct: 452 -KIDEFPYNVSSNVEFEKFK----KELPSQVLQAQI-LAQFSVDLSKNLNQSNFVIENMN 505
Query: 542 VYESAVGDSNVKGAARIEAFPPAFQSIARNPIVLDLAYNFIDF 584
Y V + + A + + P++ D+ +N+I++
Sbjct: 506 KY--PVSNETLDNIANFNK-NLSIAPVLSKPVLFDIGFNYINY 545
>sp|P38687|SRP68_YEAST Signal recognition particle subunit SRP68 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SRP68 PE=1
SV=1
Length = 599
Score = 37.4 bits (85), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 63/269 (23%), Positives = 109/269 (40%), Gaps = 53/269 (19%)
Query: 340 DDLFGLDKAVSAVLGQRTIERNQLLVSIVK-----GKLTKQRDDKT-------------- 380
DD +D+ V + + E NQ++++ +K ++++RD T
Sbjct: 314 DDQDDIDEMV-----ENSSENNQIILAYIKYNILLTSISRERDLFTHLWNQWLKLNTSLP 368
Query: 381 GKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAFRAERCFYLA 440
K+TK +E+ R+ L + +D+ +L G E + + C+L F C L+
Sbjct: 369 SKLTKYKEMERIVKNLTKYLSDIMEL--PGVYSDDELLSQLDLCKLYFQLFLNTGC--LS 424
Query: 441 RSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQMMIEELKTLCKECRSNSCIEHA 500
Y G+ EA ALY A EN L + + + D++++ RS
Sbjct: 425 VLYQSKGRYMEALALYVDAYRRLENKLSEIESL---DEILLPANLLSLNSVRS------- 474
Query: 501 KGIMVEEKASENLSNKISTVS---ISGTGKKSFQVDKFLLEKLDVYESAVGDSNVKGAAR 557
+K EN N + T++ G + D ++EKLD + D +K
Sbjct: 475 -----LQKRIENGGNSVITLAEYEKRNHGGSLGKYDLTVIEKLDSKKILPTDIQLKNL-- 527
Query: 558 IEAFP--PAFQSIARNPIVLDLAYNFIDF 584
FP P I P + DLA+N+I +
Sbjct: 528 ---FPLKPKMLPIPSKPTLFDLAFNYITY 553
>sp|A9VJL6|RNH3_BACWK Ribonuclease HIII OS=Bacillus weihenstephanensis (strain KBAB4)
GN=rnhC PE=3 SV=1
Length = 312
Score = 36.2 bits (82), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 8/87 (9%)
Query: 15 KKSINSDQIGPKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLYKSLKFTHGRG 74
KKS+NS Q P SI + +L S ++ G G T Y A+ L K L G
Sbjct: 78 KKSVNSHQYAPPSSIGTMSILGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKEL------G 131
Query: 75 KYTRKAITESTVTEV--RFLHLVLYTA 99
K + ++ + E+ + LH+V Y++
Sbjct: 132 VKDSKNLNDAQIAEIAKQLLHVVPYSS 158
>sp|Q6RI85|PGK2_PIG Phosphoglycerate kinase 2 OS=Sus scrofa GN=PGK2 PE=2 SV=3
Length = 417
Score = 33.5 bits (75), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 198 NQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALDLFKSKLEAVMAEARS 257
NQV +R++ PSIRYCL S V S L G +G A+ K LE V AE +S
Sbjct: 32 NQVTNNQRIKASLPSIRYCLDNGARSVVLMSHL---GRPDGVAMP-DKYSLEPVAAELKS 87
>sp|Q0V9E9|SETD8_XENTR N-lysine methyltransferase SETD8 OS=Xenopus tropicalis GN=setd8
PE=2 SV=1
Length = 336
Score = 33.1 bits (74), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 12/83 (14%)
Query: 202 CRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALDLFKSKLEAVMAEARSQQAA 261
CR+ ELE E + EL+Q G+ EG +D+ K V+A Q+
Sbjct: 175 CRKSKTELE----------SEEKKRIDELIQTGKEEGMKMDMITGKGRGVIATRDFQRGE 224
Query: 262 SLTEFHWLGHRFPISNAKTRVAI 284
+ E+H G I++AK R A
Sbjct: 225 FVVEYH--GDLIEITDAKRREAT 245
>sp|Q08534|R1AB_BYVU Replicase polyprotein 1ab OS=Beet yellows virus (isolate Ukraine)
GN=1a-1b PE=1 SV=2
Length = 3094
Score = 33.1 bits (74), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 184 RAVYEELGKYGDVENQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQI 233
R V EL G VEN L RE++ E + + C H +G NVK+ L+ +
Sbjct: 733 RRVSRELQARGLVEN--LSREQLVEAQARVSVCPHTLGNCNVKSDVLIMV 780
>sp|Q498E6|SET8B_XENLA N-lysine methyltransferase SETD8-B OS=Xenopus laevis GN=setd8-b
PE=1 SV=1
Length = 336
Score = 32.7 bits (73), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 12/82 (14%)
Query: 202 CRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALDLFKSKLEAVMAEARSQQAA 261
CR+ ELE E ++ EL+Q G+ +G +D+ K V+A Q+
Sbjct: 175 CRKSKTELE----------SEEKMRIDELIQTGKEDGMKMDMIIGKGRGVIATRDFQRGE 224
Query: 262 SLTEFHWLGHRFPISNAKTRVA 283
+ E+H G I++AK R A
Sbjct: 225 FVVEYH--GDLIEITDAKRREA 244
>sp|O95573|ACSL3_HUMAN Long-chain-fatty-acid--CoA ligase 3 OS=Homo sapiens GN=ACSL3 PE=1
SV=3
Length = 720
Score = 32.7 bits (73), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 11/77 (14%)
Query: 125 IGRLRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSAR 184
+G++ A+K L N+CA A +Y SY+ G ++ Q + E A K K +
Sbjct: 594 LGKVEAALKNLPLVDNICAY---------ANSYHSYVIGFVVPNQKELTELARK--KGLK 642
Query: 185 AVYEELGKYGDVENQVL 201
+EEL ++EN+VL
Sbjct: 643 GTWEELCNSCEMENEVL 659
>sp|Q5R668|ACSL3_PONAB Long-chain-fatty-acid--CoA ligase 3 OS=Pongo abelii GN=ACSL3 PE=2
SV=2
Length = 720
Score = 32.7 bits (73), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 11/77 (14%)
Query: 125 IGRLRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSAR 184
+G++ A+K L N+CA A +Y SY+ G ++ Q + E A K K +
Sbjct: 594 LGKVEAALKNLPLVDNICAY---------ANSYHSYVIGFVVPNQKELTELARK--KGLK 642
Query: 185 AVYEELGKYGDVENQVL 201
+EEL ++EN+VL
Sbjct: 643 GTWEELCNSCEMENEVL 659
>sp|Q9CZW4|ACSL3_MOUSE Long-chain-fatty-acid--CoA ligase 3 OS=Mus musculus GN=Acsl3 PE=2
SV=2
Length = 720
Score = 32.7 bits (73), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 11/77 (14%)
Query: 125 IGRLRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSAR 184
+G++ A+K L N+CA A +Y SY+ G ++ Q + T L K +
Sbjct: 594 LGKVEAALKNLPLIDNICAY---------ANSYHSYVIGFVVPNQKE--LTELARTKGFK 642
Query: 185 AVYEELGKYGDVENQVL 201
+EEL ++EN+VL
Sbjct: 643 GTWEELCNSSEMENEVL 659
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.131 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 204,120,841
Number of Sequences: 539616
Number of extensions: 8091776
Number of successful extensions: 22626
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 22567
Number of HSP's gapped (non-prelim): 69
length of query: 604
length of database: 191,569,459
effective HSP length: 123
effective length of query: 481
effective length of database: 125,196,691
effective search space: 60219608371
effective search space used: 60219608371
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)