Query 007413
Match_columns 604
No_of_seqs 127 out of 230
Neff 7.0
Searched_HMMs 29240
Date Tue Mar 26 01:11:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007413.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007413hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rau_A Tyrosine-protein phosph 79.9 11 0.00039 39.1 11.6 77 388-470 211-289 (363)
2 3r9m_A BRO1 domain-containing 74.2 11 0.00037 39.5 9.4 75 388-471 217-291 (376)
3 3c3r_A Programmed cell death 6 72.6 13 0.00044 38.9 9.6 73 388-470 240-312 (380)
4 3n71_A Histone lysine methyltr 71.2 98 0.0033 33.2 16.5 63 384-467 365-427 (490)
5 1zb1_A BRO1 protein; AIP1, BRO 70.0 12 0.00042 39.2 8.7 77 388-469 217-293 (392)
6 2rpa_A Katanin P60 ATPase-cont 65.9 19 0.00066 28.9 7.0 33 437-469 16-48 (78)
7 3qwp_A SET and MYND domain-con 62.9 40 0.0014 35.5 11.2 35 433-467 371-405 (429)
8 2xs1_A Programmed cell death 6 60.3 30 0.001 39.2 10.1 73 388-470 225-297 (704)
9 2w2u_A Hypothetical P60 katani 60.1 23 0.0008 28.6 6.7 37 433-469 19-55 (83)
10 3ma5_A Tetratricopeptide repea 59.6 28 0.00095 27.8 7.3 28 437-464 45-72 (100)
11 3qww_A SET and MYND domain-con 59.3 1.2E+02 0.0041 32.0 14.1 63 384-467 354-416 (433)
12 3ro3_A PINS homolog, G-protein 50.0 56 0.0019 26.9 8.0 60 126-190 23-82 (164)
13 2v6y_A AAA family ATPase, P60 48.0 35 0.0012 27.5 5.9 38 432-469 10-47 (83)
14 2v5f_A Prolyl 4-hydroxylase su 45.3 24 0.00082 28.8 4.7 31 434-464 6-36 (104)
15 3ro3_A PINS homolog, G-protein 44.1 59 0.002 26.7 7.2 58 126-188 103-160 (164)
16 3gw4_A Uncharacterized protein 44.0 73 0.0025 27.9 8.2 62 125-191 120-181 (203)
17 1wfd_A Hypothetical protein 15 43.7 42 0.0014 27.6 5.8 37 432-468 14-50 (93)
18 4ga2_A E3 SUMO-protein ligase 43.1 23 0.00078 30.8 4.4 31 433-463 31-61 (150)
19 3gyz_A Chaperone protein IPGC; 42.9 1.1E+02 0.0039 26.7 9.1 23 439-461 110-132 (151)
20 3ma5_A Tetratricopeptide repea 41.9 25 0.00084 28.1 4.1 27 437-463 11-37 (100)
21 1na3_A Designed protein CTPR2; 41.5 28 0.00097 26.2 4.3 27 436-462 12-38 (91)
22 4a5x_A MITD1, MIT domain-conta 40.5 1.3E+02 0.0045 24.2 8.3 30 439-468 22-51 (86)
23 3n71_A Histone lysine methyltr 40.5 1.4E+02 0.0047 32.0 10.9 29 439-467 357-385 (490)
24 3qww_A SET and MYND domain-con 40.0 74 0.0025 33.6 8.6 62 384-467 312-374 (433)
25 2kc7_A BFR218_protein; tetratr 38.9 29 0.001 26.9 4.1 26 437-462 39-64 (99)
26 4g1t_A Interferon-induced prot 37.8 3.3E+02 0.011 27.4 23.1 62 124-186 106-167 (472)
27 2xcb_A PCRH, regulatory protei 37.1 1.6E+02 0.0056 24.4 9.1 25 438-462 91-115 (142)
28 3edt_B KLC 2, kinesin light ch 36.8 1.7E+02 0.0058 26.6 9.9 66 125-193 56-121 (283)
29 3k9i_A BH0479 protein; putativ 35.7 34 0.0012 27.8 4.1 26 437-462 31-56 (117)
30 4gcn_A Protein STI-1; structur 35.3 51 0.0017 27.6 5.3 27 435-461 84-111 (127)
31 3vtx_A MAMA; tetratricopeptide 34.8 32 0.0011 30.1 4.1 25 438-462 10-34 (184)
32 2l6j_A TPR repeat-containing p 34.6 48 0.0016 25.9 4.8 27 436-462 7-33 (111)
33 1na3_A Designed protein CTPR2; 33.5 45 0.0016 24.9 4.3 26 437-462 47-72 (91)
34 3k9i_A BH0479 protein; putativ 32.8 40 0.0014 27.4 4.1 26 437-462 65-90 (117)
35 3gw4_A Uncharacterized protein 32.2 1.4E+02 0.0047 26.0 8.0 59 126-189 40-98 (203)
36 2kat_A Uncharacterized protein 32.1 46 0.0016 26.7 4.3 26 437-462 23-48 (115)
37 3upv_A Heat shock protein STI1 31.9 1.1E+02 0.0038 24.6 6.9 27 437-463 76-102 (126)
38 2hr2_A Hypothetical protein; a 31.8 92 0.0032 28.2 6.6 64 383-464 70-133 (159)
39 1qqe_A Vesicular transport pro 31.4 1.6E+02 0.0055 28.2 9.0 31 434-464 77-108 (292)
40 2kat_A Uncharacterized protein 31.0 54 0.0018 26.3 4.6 28 437-464 57-84 (115)
41 2l6j_A TPR repeat-containing p 30.5 38 0.0013 26.5 3.5 25 437-461 42-66 (111)
42 2kck_A TPR repeat; tetratricop 30.5 49 0.0017 25.5 4.1 26 437-462 44-69 (112)
43 3edt_B KLC 2, kinesin light ch 30.1 1.8E+02 0.006 26.5 8.7 63 126-191 99-161 (283)
44 3rkv_A Putative peptidylprolyl 30.1 86 0.0029 26.8 6.1 68 384-462 25-92 (162)
45 3qky_A Outer membrane assembly 29.8 2.1E+02 0.0072 26.4 9.3 27 436-462 151-177 (261)
46 2v6x_A Vacuolar protein sortin 29.8 2.1E+02 0.0071 22.7 8.5 30 439-468 19-48 (85)
47 1hxi_A PEX5, peroxisome target 29.8 48 0.0016 27.5 4.1 26 437-462 55-80 (121)
48 2fbn_A 70 kDa peptidylprolyl i 29.6 84 0.0029 27.9 6.1 26 437-462 92-117 (198)
49 4gcn_A Protein STI-1; structur 29.5 1.6E+02 0.0055 24.3 7.6 55 125-184 55-110 (127)
50 3upv_A Heat shock protein STI1 29.5 66 0.0022 26.1 4.9 23 439-461 44-66 (126)
51 2xev_A YBGF; tetratricopeptide 29.3 50 0.0017 26.7 4.1 26 437-462 43-68 (129)
52 2dl1_A Spartin; SPG20, MIT, st 29.1 1.9E+02 0.0065 24.9 7.7 43 426-468 15-57 (116)
53 2dba_A Smooth muscle cell asso 28.8 1.7E+02 0.0058 23.7 7.6 26 437-462 69-94 (148)
54 3qwp_A SET and MYND domain-con 28.4 1.5E+02 0.005 31.1 8.5 29 439-467 335-363 (429)
55 2rkl_A Vacuolar protein sortin 28.4 69 0.0024 23.7 4.1 39 147-188 13-51 (53)
56 2xcb_A PCRH, regulatory protei 28.2 52 0.0018 27.8 4.1 26 437-462 56-81 (142)
57 2cpt_A SKD1 protein, vacuolar 28.0 1E+02 0.0034 26.5 5.8 30 439-468 24-53 (117)
58 3gyz_A Chaperone protein IPGC; 28.0 51 0.0017 29.0 4.1 26 438-463 75-100 (151)
59 3vtx_A MAMA; tetratricopeptide 27.8 48 0.0016 28.9 4.0 26 437-462 145-170 (184)
60 3u3w_A Transcriptional activat 27.6 1E+02 0.0034 29.6 6.6 30 436-465 157-187 (293)
61 2vgx_A Chaperone SYCD; alterna 27.6 53 0.0018 28.3 4.1 27 437-463 93-119 (148)
62 2vgx_A Chaperone SYCD; alterna 27.4 54 0.0018 28.3 4.1 26 437-462 59-84 (148)
63 4gco_A Protein STI-1; structur 27.3 56 0.0019 27.3 4.1 26 437-462 85-110 (126)
64 2v5f_A Prolyl 4-hydroxylase su 27.3 1.2E+02 0.0041 24.4 6.1 26 437-462 50-75 (104)
65 1elr_A TPR2A-domain of HOP; HO 25.9 84 0.0029 24.8 4.9 25 439-463 44-68 (131)
66 1na0_A Designed protein CTPR3; 25.8 69 0.0024 25.0 4.3 26 437-462 13-38 (125)
67 2crb_A Nuclear receptor bindin 25.6 79 0.0027 26.2 4.3 31 439-469 21-51 (97)
68 2qfc_A PLCR protein; TPR, HTH, 25.2 1.2E+02 0.004 29.1 6.6 27 438-464 201-227 (293)
69 1elr_A TPR2A-domain of HOP; HO 25.0 85 0.0029 24.8 4.8 25 437-461 8-32 (131)
70 2xze_A STAM-binding protein; h 23.8 1.7E+02 0.0057 26.1 6.7 45 428-472 34-79 (146)
71 2lni_A Stress-induced-phosphop 23.6 79 0.0027 25.2 4.3 26 437-462 88-113 (133)
72 4gco_A Protein STI-1; structur 23.6 72 0.0025 26.6 4.1 25 438-462 52-76 (126)
73 3u3w_A Transcriptional activat 23.4 1.5E+02 0.0051 28.3 7.0 29 437-465 200-228 (293)
74 3rkv_A Putative peptidylprolyl 23.4 70 0.0024 27.4 4.1 25 438-462 102-126 (162)
75 2vyi_A SGTA protein; chaperone 23.2 82 0.0028 24.8 4.3 26 437-462 84-109 (131)
76 2kc7_A BFR218_protein; tetratr 23.0 80 0.0027 24.2 4.1 26 437-462 4-29 (99)
77 3sz7_A HSC70 cochaperone (SGT) 22.9 77 0.0026 27.2 4.3 26 438-463 50-75 (164)
78 1elw_A TPR1-domain of HOP; HOP 22.7 1.1E+02 0.0037 23.5 4.9 23 439-461 10-32 (118)
79 1elw_A TPR1-domain of HOP; HOP 22.6 86 0.003 24.1 4.3 26 437-462 42-67 (118)
80 3sz7_A HSC70 cochaperone (SGT) 22.6 96 0.0033 26.5 4.9 28 436-463 14-41 (164)
81 1na0_A Designed protein CTPR3; 22.6 87 0.003 24.4 4.3 26 437-462 47-72 (125)
82 2xev_A YBGF; tetratricopeptide 22.5 80 0.0027 25.4 4.1 26 437-462 80-105 (129)
83 2ifu_A Gamma-SNAP; membrane fu 22.4 3.2E+02 0.011 26.2 9.3 76 382-465 68-147 (307)
84 2hr2_A Hypothetical protein; a 22.2 1.6E+02 0.0054 26.6 6.3 34 154-188 9-42 (159)
85 2kck_A TPR repeat; tetratricop 22.0 56 0.0019 25.1 2.9 26 437-462 10-35 (112)
86 3q15_A PSP28, response regulat 21.7 2.2E+02 0.0075 28.1 8.1 30 437-466 340-369 (378)
87 2fo7_A Synthetic consensus TPR 21.7 90 0.0031 24.5 4.3 25 437-461 5-29 (136)
88 3q49_B STIP1 homology and U bo 21.1 1.1E+02 0.0037 24.8 4.8 23 439-461 15-37 (137)
89 2vyi_A SGTA protein; chaperone 20.8 98 0.0034 24.3 4.3 26 437-462 50-75 (131)
90 1pc2_A Mitochondria fission pr 20.6 93 0.0032 28.1 4.3 25 437-461 75-99 (152)
91 3q49_B STIP1 homology and U bo 20.5 1.1E+02 0.0037 24.8 4.6 28 437-464 81-108 (137)
92 2lni_A Stress-induced-phosphop 20.3 79 0.0027 25.2 3.6 26 437-462 54-79 (133)
93 2dba_A Smooth muscle cell asso 20.3 97 0.0033 25.3 4.3 26 437-462 103-128 (148)
94 4ga2_A E3 SUMO-protein ligase 20.2 90 0.0031 26.8 4.1 25 438-462 70-94 (150)
No 1
>3rau_A Tyrosine-protein phosphatase non-receptor type 23; BRO1 domain, hydrolase; 1.95A {Homo sapiens}
Probab=79.88 E-value=11 Score=39.08 Aligned_cols=77 Identities=16% Similarity=0.146 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHHHHHHh--cccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 007413 388 ELVRLYDLLLQNTADLS--DLVSSGRERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAEN 465 (604)
Q Consensus 388 e~vrLyd~ilq~l~ei~--eLpgv~~~~~~~d~~l~~~l~a~~~~~~A~rc~~lA~sy~~~~K~~EAlaL~~ra~~~~~~ 465 (604)
++..+|+.....+.... .+.| .-+.++..-+..+..+|+|.=||+.|......+|+-||+|-+..|...+.+
T Consensus 211 q~~~~Y~~a~~~l~~~~~~~~~~------~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e~~k~GeaIa~L~~A~~~l~~ 284 (363)
T 3rau_A 211 QVVDYYKEACRALENPDTASLLG------RIQKDWKKLVQMKIYYFAAVAHLHMGKQAEEQQKFGERVAYFQSALDKLNE 284 (363)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHT------THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCccccccc------cccHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHHHH
Confidence 35566666666554321 1112 124588888999999999999999999999999999999999999999998
Q ss_pred HHHHH
Q 007413 466 ALKDF 470 (604)
Q Consensus 466 a~~~~ 470 (604)
+.+..
T Consensus 285 a~~~~ 289 (363)
T 3rau_A 285 AIKLA 289 (363)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 88753
No 2
>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A
Probab=74.17 E-value=11 Score=39.47 Aligned_cols=75 Identities=17% Similarity=0.087 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHH
Q 007413 388 ELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENAL 467 (604)
Q Consensus 388 e~vrLyd~ilq~l~ei~eLpgv~~~~~~~d~~l~~~l~a~~~~~~A~rc~~lA~sy~~~~K~~EAlaL~~ra~~~~~~a~ 467 (604)
++..+|+.....+..+ +. .-+..+..-+..+..+|+|.=||+.|......+||-||++-+..|.+.+.++.
T Consensus 217 q~~~~Y~~a~~~l~~~---~~------~i~~~W~~~v~~K~~~~~A~A~y~~a~~~~~~~k~GeaIa~L~~A~~~l~~a~ 287 (376)
T 3r9m_A 217 ETANFYQKADHTLSSL---EP------AYSAKWRKYLHLKMCFYTAYAYCYHGETLLASDKCGEAIRSLQEAEKLYAKAE 287 (376)
T ss_dssp HHHHHHHHHHHHHTTS---CH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc---cc------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHH
Confidence 3555666666555432 11 12446788899999999999999999999999999999999999999999888
Q ss_pred HHHh
Q 007413 468 KDFQ 471 (604)
Q Consensus 468 ~~~~ 471 (604)
+..+
T Consensus 288 ~~~~ 291 (376)
T 3r9m_A 288 ALCK 291 (376)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7544
No 3
>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C amphipathic-helix, apoptosis, HOST-virus interaction, protein transport, transport; 2.02A {Homo sapiens} PDB: 2oew_A 3c3o_A 3c3q_A
Probab=72.64 E-value=13 Score=38.90 Aligned_cols=73 Identities=8% Similarity=-0.023 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHH
Q 007413 388 ELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENAL 467 (604)
Q Consensus 388 e~vrLyd~ilq~l~ei~eLpgv~~~~~~~d~~l~~~l~a~~~~~~A~rc~~lA~sy~~~~K~~EAlaL~~ra~~~~~~a~ 467 (604)
++..+|+.....+. +.+. -+..+..-+..+..+|+|.=+|+.|...-..+|+-||+|.+..|.+.+.++.
T Consensus 240 ~~~~~Y~~A~~~l~----~~~~------~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e~~k~GeaIa~L~~A~~~l~~a~ 309 (380)
T 3c3r_A 240 QAADYFGDAFKQCQ----YKDT------LPKEVFPVLAAKHCIMQANAEYHQSILAKQQKKFGEEIARLQHAAELIKTVA 309 (380)
T ss_dssp HHHHHHHHHHHHHT----TCCC------SCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc----cccc------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH
Confidence 45667777766665 2221 1237788889999999999999999999999999999999999999999887
Q ss_pred HHH
Q 007413 468 KDF 470 (604)
Q Consensus 468 ~~~ 470 (604)
+..
T Consensus 310 ~~~ 312 (380)
T 3c3r_A 310 SRY 312 (380)
T ss_dssp HHC
T ss_pred HHh
Confidence 653
No 4
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=71.17 E-value=98 Score=33.23 Aligned_cols=63 Identities=11% Similarity=0.055 Sum_probs=46.4
Q ss_pred CChhhHHHHHHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHH
Q 007413 384 TKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHA 463 (604)
Q Consensus 384 ~k~~e~vrLyd~ilq~l~ei~eLpgv~~~~~~~d~~l~~~l~a~~~~~~A~rc~~lA~sy~~~~K~~EAlaL~~ra~~~~ 463 (604)
.++.+-..+|.-.|...+.+. | .+..+.... ...||..|...|+|.||..+|.+|+...
T Consensus 365 g~~~eA~~~~~~aL~i~~~~l---G------~~Hp~~a~~------------l~nLa~~~~~~G~~~eA~~~~~~Al~i~ 423 (490)
T 3n71_A 365 QAYEEASHYARRMVDGYMKLY---H------HNNAQLGMA------------VMRAGLTNWHAGHIEVGHGMICKAYAIL 423 (490)
T ss_dssp TCHHHHHHHHHHHHHHHHHHS---C------TTCHHHHHH------------HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHc---C------CCCHHHHHH------------HHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 467788888888888777652 3 223333222 2348999999999999999999999988
Q ss_pred HHHH
Q 007413 464 ENAL 467 (604)
Q Consensus 464 ~~a~ 467 (604)
..+.
T Consensus 424 ~~~l 427 (490)
T 3n71_A 424 LVTH 427 (490)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 7665
No 5
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae}
Probab=69.97 E-value=12 Score=39.20 Aligned_cols=77 Identities=13% Similarity=0.099 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHH
Q 007413 388 ELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENAL 467 (604)
Q Consensus 388 e~vrLyd~ilq~l~ei~eLpgv~~~~~~~d~~l~~~l~a~~~~~~A~rc~~lA~sy~~~~K~~EAlaL~~ra~~~~~~a~ 467 (604)
++..+|+.....+..... ++. ..-+..+..-+..+..+|+|.=+|+.|...-..+|+-||+|.+..|.+.+.++.
T Consensus 217 ~~~~~Y~~a~~~l~~~~~--~~~---~~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e~~k~GeaIa~L~~A~~~l~~a~ 291 (392)
T 1zb1_A 217 ATCNLFQKCHDFMKEIDD--DVA---IYGEPKWKTTVTCKLHFYKSLSAYYHGLHLEEENRVGEAIAFLDFSMQQLISSL 291 (392)
T ss_dssp HHHHHHHHHHHHHHSCCC--TTT---SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHhhccc--ccc---ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHH
Confidence 466777777776664320 010 011458888899999999999999999999999999999999999999999887
Q ss_pred HH
Q 007413 468 KD 469 (604)
Q Consensus 468 ~~ 469 (604)
+.
T Consensus 292 ~~ 293 (392)
T 1zb1_A 292 PF 293 (392)
T ss_dssp GG
T ss_pred Hh
Confidence 64
No 6
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=65.89 E-value=19 Score=28.92 Aligned_cols=33 Identities=27% Similarity=0.348 Sum_probs=28.8
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHH
Q 007413 437 FYLARSYSLAGKRTEAYALYCRARSHAENALKD 469 (604)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~~~~a~~~ 469 (604)
..+|+-|+..|+|..|+..|+-+.+.+..-...
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l~~ 48 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLDQMNKYLYS 48 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHh
Confidence 348999999999999999999999999866543
No 7
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=62.85 E-value=40 Score=35.53 Aligned_cols=35 Identities=9% Similarity=-0.107 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHH
Q 007413 433 AERCFYLARSYSLAGKRTEAYALYCRARSHAENAL 467 (604)
Q Consensus 433 A~rc~~lA~sy~~~~K~~EAlaL~~ra~~~~~~a~ 467 (604)
|.-.+.||..|...|+|.||+.+|.+|+.....+.
T Consensus 371 a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~l 405 (429)
T 3qwp_A 371 GVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTH 405 (429)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Confidence 33345599999999999999999999999888765
No 8
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=60.34 E-value=30 Score=39.16 Aligned_cols=73 Identities=8% Similarity=-0.033 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHH
Q 007413 388 ELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENAL 467 (604)
Q Consensus 388 e~vrLyd~ilq~l~ei~eLpgv~~~~~~~d~~l~~~l~a~~~~~~A~rc~~lA~sy~~~~K~~EAlaL~~ra~~~~~~a~ 467 (604)
++..+|+.....+. +.+ . -+..+..-+..+..+|+|.=|||.|......+||-||+|.+..|...+..+.
T Consensus 225 ~~~~~Y~~A~~~l~-~~~--~-------~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e~~k~GeaIa~L~~A~~~l~~a~ 294 (704)
T 2xs1_A 225 QAADYFGDAFKQCQ-YKD--T-------LPKEVFPVLAAKHCIMQANAEYHQSILAKQQYYFGEEIARLQHAAELIKTVA 294 (704)
T ss_dssp HHHHHHHHHHHHHH-TCC--C-------SCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-ccc--c-------ccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 45667777776665 211 1 1237888889999999999999999999999999999999999999999888
Q ss_pred HHH
Q 007413 468 KDF 470 (604)
Q Consensus 468 ~~~ 470 (604)
+..
T Consensus 295 ~~~ 297 (704)
T 2xs1_A 295 SRY 297 (704)
T ss_dssp HHS
T ss_pred HHh
Confidence 654
No 9
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=60.14 E-value=23 Score=28.64 Aligned_cols=37 Identities=19% Similarity=0.069 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHH
Q 007413 433 AERCFYLARSYSLAGKRTEAYALYCRARSHAENALKD 469 (604)
Q Consensus 433 A~rc~~lA~sy~~~~K~~EAlaL~~ra~~~~~~a~~~ 469 (604)
|...+.-|--.-..|+|.||+.+|..|.+.+..+...
T Consensus 19 Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~alk~ 55 (83)
T 2w2u_A 19 ARKYAINAVKADKEGNAEEAITNYKKAIEVLAQLVSL 55 (83)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445666688999999999999999999988764
No 10
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=59.64 E-value=28 Score=27.80 Aligned_cols=28 Identities=18% Similarity=0.322 Sum_probs=24.2
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHHHH
Q 007413 437 FYLARSYSLAGKRTEAYALYCRARSHAE 464 (604)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~~~ 464 (604)
+.+|.+|...|+|.+|+..|.++.....
T Consensus 45 ~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 45 YHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 3489999999999999999999987654
No 11
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=59.34 E-value=1.2e+02 Score=31.95 Aligned_cols=63 Identities=13% Similarity=0.025 Sum_probs=47.4
Q ss_pred CChhhHHHHHHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHH
Q 007413 384 TKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHA 463 (604)
Q Consensus 384 ~k~~e~vrLyd~ilq~l~ei~eLpgv~~~~~~~d~~l~~~l~a~~~~~~A~rc~~lA~sy~~~~K~~EAlaL~~ra~~~~ 463 (604)
.++.+-..+|.-.+...+.+. | .+..+.... -..||..|...|+|.||..+|.+|+...
T Consensus 354 g~~~eA~~~~~~aL~i~~~~l---G------~~Hp~~a~~------------l~nLa~~~~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 354 QDWEGALKYGQKIIKPYSKHY---P------VYSLNVASM------------WLKLGRLYMGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp TCHHHHHHHHHHHHHHHHHHS---C------SSCHHHHHH------------HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHc---C------CCChHHHHH------------HHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 477888889988888888763 3 123333222 2359999999999999999999999988
Q ss_pred HHHH
Q 007413 464 ENAL 467 (604)
Q Consensus 464 ~~a~ 467 (604)
..+.
T Consensus 413 ~~~l 416 (433)
T 3qww_A 413 EVAH 416 (433)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 7664
No 12
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=50.03 E-value=56 Score=26.89 Aligned_cols=60 Identities=23% Similarity=0.159 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHH
Q 007413 126 GRLRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEEL 190 (604)
Q Consensus 126 ~RLkKA~~~A~~L~~l~~~~~d~~t~lEa~aY~a~i~G~~~~E~~~~w~~al~~~s~ar~iy~~L 190 (604)
.++.+|..+..+.+.++....+... .+...+..|.+++..+ +|++|+..|..|..++...
T Consensus 23 ~~~~~A~~~~~~al~~~~~~~~~~~----~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~~~ 82 (164)
T 3ro3_A 23 GNFRDAVIAHEQRLLIAKEFGDKAA----ERIAYSNLGNAYIFLG-EFETASEYYKKTLLLARQL 82 (164)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHH----HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHHHHhCCchH----HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHh
Confidence 4566888888888888766555433 3455566788889887 9999999999988776654
No 13
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=48.00 E-value=35 Score=27.46 Aligned_cols=38 Identities=21% Similarity=0.139 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHH
Q 007413 432 RAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKD 469 (604)
Q Consensus 432 ~A~rc~~lA~sy~~~~K~~EAlaL~~ra~~~~~~a~~~ 469 (604)
+|.....-|--.-..|+|.||+.||..|.+.+..+.+.
T Consensus 10 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~~lk~ 47 (83)
T 2v6y_A 10 MARKYAILAVKADKEGKVEDAITYYKKAIEVLSQIIVL 47 (83)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556677788999999999999999999988763
No 14
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=45.32 E-value=24 Score=28.80 Aligned_cols=31 Identities=16% Similarity=0.159 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHHHHH
Q 007413 434 ERCFYLARSYSLAGKRTEAYALYCRARSHAE 464 (604)
Q Consensus 434 ~rc~~lA~sy~~~~K~~EAlaL~~ra~~~~~ 464 (604)
.=||.||..+...|.|..|..-|..|+.+..
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~ 36 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLD 36 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhh
Confidence 3499999999999999999999999988764
No 15
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=44.07 E-value=59 Score=26.73 Aligned_cols=58 Identities=16% Similarity=0.122 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Q 007413 126 GRLRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYE 188 (604)
Q Consensus 126 ~RLkKA~~~A~~L~~l~~~~~d~~t~lEa~aY~a~i~G~~~~E~~~~w~~al~~~s~ar~iy~ 188 (604)
.++.+|..+....+.++....+... .+......|.+++..+ ++++|...|..|..+..
T Consensus 103 ~~~~~A~~~~~~a~~~~~~~~~~~~----~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 103 QDYEKAIDYHLKHLAIAQELKDRIG----EGRACWSLGNAYTALG-NHDQAMHFAEKHLEISR 160 (164)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHccchHh----HHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHH
Confidence 3456677777776666654443322 2344455677777776 88888888877766654
No 16
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=44.03 E-value=73 Score=27.89 Aligned_cols=62 Identities=23% Similarity=0.151 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHh
Q 007413 125 IGRLRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELG 191 (604)
Q Consensus 125 ~~RLkKA~~~A~~L~~l~~~~~d~~t~lEa~aY~a~i~G~~~~E~~~~w~~al~~~s~ar~iy~~L~ 191 (604)
..++.+|..+..+...++....+... .++.....|.+++..+ +|++|...|..|..++..+.
T Consensus 120 ~g~~~~A~~~~~~al~~~~~~~~~~~----~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~ 181 (203)
T 3gw4_A 120 FGDLAGARQEYEKSLVYAQQADDQVA----IACAFRGLGDLAQQEK-NLLEAQQHWLRARDIFAELE 181 (203)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTT
T ss_pred hCCHHHHHHHHHHHHHHHHhccchHH----HHHHHHHHHHHHHHCc-CHHHHHHHHHHHHHHHHHcC
Confidence 45677888888888877765555443 2444566788888887 99999999999988877664
No 17
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=43.67 E-value=42 Score=27.64 Aligned_cols=37 Identities=16% Similarity=0.074 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q 007413 432 RAERCFYLARSYSLAGKRTEAYALYCRARSHAENALK 468 (604)
Q Consensus 432 ~A~rc~~lA~sy~~~~K~~EAlaL~~ra~~~~~~a~~ 468 (604)
+|...+.-|--.-..|+|.||+.+|..|.+++-.+..
T Consensus 14 ~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~alk 50 (93)
T 1wfd_A 14 AAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLK 50 (93)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 3444444556667889999999999999999988875
No 18
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=43.13 E-value=23 Score=30.78 Aligned_cols=31 Identities=23% Similarity=0.265 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhhCChHHHHHHHHHHHHHH
Q 007413 433 AERCFYLARSYSLAGKRTEAYALYCRARSHA 463 (604)
Q Consensus 433 A~rc~~lA~sy~~~~K~~EAlaL~~ra~~~~ 463 (604)
+...|.||.+|...|+|.+|+..|.++++.-
T Consensus 31 ~~~~~~la~~y~~~~~~~~A~~~~~~al~~~ 61 (150)
T 4ga2_A 31 SIKGFYFAKLYYEAKEYDLAKKYICTYINVQ 61 (150)
T ss_dssp HTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3456789999999999999999999998753
No 19
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=42.87 E-value=1.1e+02 Score=26.67 Aligned_cols=23 Identities=4% Similarity=-0.175 Sum_probs=13.5
Q ss_pred HHHHHHhhCChHHHHHHHHHHHH
Q 007413 439 LARSYSLAGKRTEAYALYCRARS 461 (604)
Q Consensus 439 lA~sy~~~~K~~EAlaL~~ra~~ 461 (604)
+|.+|...|++.+|+..|.+|..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555566666666665555544
No 20
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=41.91 E-value=25 Score=28.12 Aligned_cols=27 Identities=19% Similarity=0.171 Sum_probs=23.9
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHHH
Q 007413 437 FYLARSYSLAGKRTEAYALYCRARSHA 463 (604)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~~ 463 (604)
+.+|.+|...|+|.+|+..|.++...-
T Consensus 11 ~~lg~~~~~~g~~~~A~~~~~~al~~~ 37 (100)
T 3ma5_A 11 YALAQEHLKHDNASRALALFEELVETD 37 (100)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 458999999999999999999998753
No 21
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=41.52 E-value=28 Score=26.17 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=23.5
Q ss_pred HHHHHHHHHhhCChHHHHHHHHHHHHH
Q 007413 436 CFYLARSYSLAGKRTEAYALYCRARSH 462 (604)
Q Consensus 436 c~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (604)
++.+|.+|...|+|.+|+..|.++...
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~ 38 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALEL 38 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 455899999999999999999999864
No 22
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=40.52 E-value=1.3e+02 Score=24.24 Aligned_cols=30 Identities=17% Similarity=0.084 Sum_probs=25.4
Q ss_pred HHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q 007413 439 LARSYSLAGKRTEAYALYCRARSHAENALK 468 (604)
Q Consensus 439 lA~sy~~~~K~~EAlaL~~ra~~~~~~a~~ 468 (604)
-|--.-..|+|.||+.+|..|.+.+-.+..
T Consensus 22 ~Ave~D~~g~y~eAl~lY~~Aie~ll~alk 51 (86)
T 4a5x_A 22 RAVELDSESRYPQALVCYQEGIDLLLQVLK 51 (86)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence 444457899999999999999999988775
No 23
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=40.45 E-value=1.4e+02 Score=32.04 Aligned_cols=29 Identities=14% Similarity=-0.085 Sum_probs=25.9
Q ss_pred HHHHHHhhCChHHHHHHHHHHHHHHHHHH
Q 007413 439 LARSYSLAGKRTEAYALYCRARSHAENAL 467 (604)
Q Consensus 439 lA~sy~~~~K~~EAlaL~~ra~~~~~~a~ 467 (604)
||.+|...|+|.||..+|.+|+.......
T Consensus 357 La~~y~~~g~~~eA~~~~~~aL~i~~~~l 385 (490)
T 3n71_A 357 ASEVLSYLQAYEEASHYARRMVDGYMKLY 385 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHc
Confidence 89999999999999999999998776554
No 24
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=40.02 E-value=74 Score=33.61 Aligned_cols=62 Identities=10% Similarity=0.053 Sum_probs=43.2
Q ss_pred CChhhHHHHHHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhCChHHHHHHHHHHHHH
Q 007413 384 TKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAFRAERCF-YLARSYSLAGKRTEAYALYCRARSH 462 (604)
Q Consensus 384 ~k~~e~vrLyd~ilq~l~ei~eLpgv~~~~~~~d~~l~~~l~a~~~~~~A~rc~-~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (604)
.++.|-+.+|.-.+...+.+. | ++..... +++ .||.+|...|+|.||+.+|.+++..
T Consensus 312 g~~~eA~~~~~~~L~i~~~~l---g------~~Hp~~a-------------~~~~nLa~~y~~~g~~~eA~~~~~~aL~i 369 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVF---E------DSNVYML-------------HMMYQAMGVCLYMQDWEGALKYGQKIIKP 369 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTB---C------TTSHHHH-------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCcc---C------hhchHHH-------------HHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Confidence 467777788777666655432 3 2232322 233 3899999999999999999999987
Q ss_pred HHHHH
Q 007413 463 AENAL 467 (604)
Q Consensus 463 ~~~a~ 467 (604)
.....
T Consensus 370 ~~~~l 374 (433)
T 3qww_A 370 YSKHY 374 (433)
T ss_dssp HHHHS
T ss_pred HHHHc
Confidence 76554
No 25
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=38.87 E-value=29 Score=26.94 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=22.8
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHH
Q 007413 437 FYLARSYSLAGKRTEAYALYCRARSH 462 (604)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (604)
+.+|.+|...|+|.+|+..|.++...
T Consensus 39 ~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 39 YLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 44899999999999999999999764
No 26
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=37.83 E-value=3.3e+02 Score=27.38 Aligned_cols=62 Identities=18% Similarity=0.124 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Q 007413 124 LIGRLRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAV 186 (604)
Q Consensus 124 ~~~RLkKA~~~A~~L~~l~~~~~d~~t~lEa~aY~a~i~G~~~~E~~~~w~~al~~~s~ar~i 186 (604)
.+.++.+|..+-++..+++....+.....-+.+|...-.+.+.+.++ +|++|++.|..|-.+
T Consensus 106 ~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~y~~A~~~~~kal~~ 167 (472)
T 4g1t_A 106 HMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGN-QNERAKVCFEKALEK 167 (472)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccc-cHHHHHHHHHHHHHh
Confidence 35677899999888888887544332211234454443445566666 999999999877543
No 27
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=37.10 E-value=1.6e+02 Score=24.41 Aligned_cols=25 Identities=20% Similarity=0.050 Sum_probs=16.1
Q ss_pred HHHHHHHhhCChHHHHHHHHHHHHH
Q 007413 438 YLARSYSLAGKRTEAYALYCRARSH 462 (604)
Q Consensus 438 ~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (604)
.+|.+|...|+|.+|+..|.++...
T Consensus 91 ~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 91 HAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3666666666666666666666554
No 28
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=36.79 E-value=1.7e+02 Score=26.57 Aligned_cols=66 Identities=11% Similarity=-0.040 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhcC
Q 007413 125 IGRLRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELGKY 193 (604)
Q Consensus 125 ~~RLkKA~~~A~~L~~l~~~~~d~~t~lEa~aY~a~i~G~~~~E~~~~w~~al~~~s~ar~iy~~L~~~ 193 (604)
..++.+|..+....+.++...........+. .....|.+++..+ +|++|+..|..|..++..+...
T Consensus 56 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 56 QNKYKEAAHLLNDALAIREKTLGKDHPAVAA--TLNNLAVLYGKRG-KYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH--HHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHHCT
T ss_pred cccHHHHHHHHHHHHHHHHHHcCCcchHHHH--HHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHcCC
Confidence 3456788888888887775542222222233 3445678888887 9999999999998888776544
No 29
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=35.68 E-value=34 Score=27.84 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=23.1
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHH
Q 007413 437 FYLARSYSLAGKRTEAYALYCRARSH 462 (604)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (604)
+.+|.+|...|+|.+|+..|.++.+.
T Consensus 31 ~~lg~~~~~~~~~~~A~~~~~~al~~ 56 (117)
T 3k9i_A 31 LGLGSTFRTLGEYRKAEAVLANGVKQ 56 (117)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34899999999999999999999765
No 30
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=35.34 E-value=51 Score=27.56 Aligned_cols=27 Identities=11% Similarity=0.175 Sum_probs=23.1
Q ss_pred HHHH-HHHHHHhhCChHHHHHHHHHHHH
Q 007413 435 RCFY-LARSYSLAGKRTEAYALYCRARS 461 (604)
Q Consensus 435 rc~~-lA~sy~~~~K~~EAlaL~~ra~~ 461 (604)
++++ +|.+|...|+|.+|+..|.+|+.
T Consensus 84 ~~~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 84 KAMSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444 99999999999999999999865
No 31
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=34.85 E-value=32 Score=30.12 Aligned_cols=25 Identities=12% Similarity=0.058 Sum_probs=22.2
Q ss_pred HHHHHHHhhCChHHHHHHHHHHHHH
Q 007413 438 YLARSYSLAGKRTEAYALYCRARSH 462 (604)
Q Consensus 438 ~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (604)
.||.+|...|+|.+|+..|.+|++.
T Consensus 10 ~lG~~~~~~g~~~~A~~~~~~al~~ 34 (184)
T 3vtx_A 10 DIGDKKRTKGDFDGAIRAYKKVLKA 34 (184)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4899999999999999999999874
No 32
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=34.61 E-value=48 Score=25.87 Aligned_cols=27 Identities=19% Similarity=-0.044 Sum_probs=22.0
Q ss_pred HHHHHHHHHhhCChHHHHHHHHHHHHH
Q 007413 436 CFYLARSYSLAGKRTEAYALYCRARSH 462 (604)
Q Consensus 436 c~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (604)
.+.+|..|...|+|.+|+..|.++...
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~ 33 (111)
T 2l6j_A 7 QKEQGNSLFKQGLYREAVHCYDQLITA 33 (111)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 345888888899999999999888764
No 33
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=33.50 E-value=45 Score=24.93 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=22.9
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHH
Q 007413 437 FYLARSYSLAGKRTEAYALYCRARSH 462 (604)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (604)
+.+|.+|...|++.+|+..|.++...
T Consensus 47 ~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 47 YNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45899999999999999999999764
No 34
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=32.80 E-value=40 Score=27.40 Aligned_cols=26 Identities=12% Similarity=0.140 Sum_probs=22.9
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHH
Q 007413 437 FYLARSYSLAGKRTEAYALYCRARSH 462 (604)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (604)
+.+|.+|...|+|.+|+..|.+++..
T Consensus 65 ~~l~~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 65 VFYAMVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34899999999999999999999764
No 35
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=32.23 E-value=1.4e+02 Score=25.95 Aligned_cols=59 Identities=19% Similarity=0.192 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHH
Q 007413 126 GRLRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEE 189 (604)
Q Consensus 126 ~RLkKA~~~A~~L~~l~~~~~d~~t~lEa~aY~a~i~G~~~~E~~~~w~~al~~~s~ar~iy~~ 189 (604)
.++.+|..+..+.+.++....+... .+...+..|.+++..+ +|++|+..|..|..++..
T Consensus 40 g~~~~A~~~~~~al~~~~~~~~~~~----~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~ 98 (203)
T 3gw4_A 40 DRFDEARASFQALQQQAQKSGDHTA----EHRALHQVGMVERMAG-NWDAARRCFLEERELLAS 98 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHTTCCHHH----HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHcCCcHH----HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHH
Confidence 4566888888888888876555433 3444566788888887 999999999998887764
No 36
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=32.10 E-value=46 Score=26.75 Aligned_cols=26 Identities=19% Similarity=0.197 Sum_probs=22.3
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHH
Q 007413 437 FYLARSYSLAGKRTEAYALYCRARSH 462 (604)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (604)
+.+|.+|...|+|.+|+..|.++...
T Consensus 23 ~~lg~~~~~~g~~~~A~~~~~~al~~ 48 (115)
T 2kat_A 23 FTLGKTYAEHEQFDAALPHLRAALDF 48 (115)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 44889999999999999999998764
No 37
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=31.87 E-value=1.1e+02 Score=24.62 Aligned_cols=27 Identities=15% Similarity=0.016 Sum_probs=24.0
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHHH
Q 007413 437 FYLARSYSLAGKRTEAYALYCRARSHA 463 (604)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~~ 463 (604)
+.+|.+|...|+|.+|+..|.++....
T Consensus 76 ~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 76 IRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 348999999999999999999998865
No 38
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=31.78 E-value=92 Score=28.21 Aligned_cols=64 Identities=19% Similarity=0.134 Sum_probs=46.0
Q ss_pred CCChhhHHHHHHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHH
Q 007413 383 VTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSH 462 (604)
Q Consensus 383 ~~k~~e~vrLyd~ilq~l~ei~eLpgv~~~~~~~d~~l~~~l~a~~~~~~A~rc~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (604)
+.+++|-+.-|+-.|..+..--++.. ++. ..+++++ |..|.+|...|+|.||+.-|++|++.
T Consensus 70 Lgr~~eAl~~~~kAL~l~n~~~e~~p-------d~~---------~A~~~~~--~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 70 LRSFDEALHSADKALHYFNRRGELNQ-------DEG---------KLWISAV--YSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHCCTTS-------THH---------HHHHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhhccccCCC-------chH---------HHHHHHH--HhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 56899999999999987666655533 111 1121211 34899999999999999999999887
Q ss_pred HH
Q 007413 463 AE 464 (604)
Q Consensus 463 ~~ 464 (604)
..
T Consensus 132 ~p 133 (159)
T 2hr2_A 132 IE 133 (159)
T ss_dssp HH
T ss_pred CC
Confidence 53
No 39
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=31.43 E-value=1.6e+02 Score=28.20 Aligned_cols=31 Identities=10% Similarity=0.066 Sum_probs=26.4
Q ss_pred HHHHH-HHHHHHhhCChHHHHHHHHHHHHHHH
Q 007413 434 ERCFY-LARSYSLAGKRTEAYALYCRARSHAE 464 (604)
Q Consensus 434 ~rc~~-lA~sy~~~~K~~EAlaL~~ra~~~~~ 464 (604)
..++. +|.+|...|+|.+|+..|.+|.....
T Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~ 108 (292)
T 1qqe_A 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFT 108 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 34444 99999999999999999999998764
No 40
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=31.05 E-value=54 Score=26.28 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=24.7
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHHHH
Q 007413 437 FYLARSYSLAGKRTEAYALYCRARSHAE 464 (604)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~~~ 464 (604)
+.+|.+|...|++.+|...|.++.....
T Consensus 57 ~~la~~~~~~g~~~~A~~~~~~al~~~~ 84 (115)
T 2kat_A 57 KWLGKTLQGQGDRAGARQAWESGLAAAQ 84 (115)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 4589999999999999999999987653
No 41
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=30.52 E-value=38 Score=26.52 Aligned_cols=25 Identities=16% Similarity=0.024 Sum_probs=22.2
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHH
Q 007413 437 FYLARSYSLAGKRTEAYALYCRARS 461 (604)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~ 461 (604)
+.+|.+|...|+|.+|+..|.++..
T Consensus 42 ~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 42 SNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3589999999999999999999865
No 42
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=30.46 E-value=49 Score=25.46 Aligned_cols=26 Identities=12% Similarity=0.025 Sum_probs=22.8
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHH
Q 007413 437 FYLARSYSLAGKRTEAYALYCRARSH 462 (604)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (604)
+.+|.+|...|+|.+|+..|.++...
T Consensus 44 ~~~a~~~~~~~~~~~A~~~~~~a~~~ 69 (112)
T 2kck_A 44 LMKGKALYNLERYEEAVDCYNYVINV 69 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 45899999999999999999998754
No 43
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=30.14 E-value=1.8e+02 Score=26.47 Aligned_cols=63 Identities=13% Similarity=-0.033 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHh
Q 007413 126 GRLRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELG 191 (604)
Q Consensus 126 ~RLkKA~~~A~~L~~l~~~~~d~~t~lEa~aY~a~i~G~~~~E~~~~w~~al~~~s~ar~iy~~L~ 191 (604)
.++.+|..+-.+.+.++....+...... +......|.+++..+ +|++|+..|..+..++....
T Consensus 99 g~~~~A~~~~~~al~~~~~~~~~~~~~~--~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~ 161 (283)
T 3edt_B 99 GKYKEAEPLCKRALEIREKVLGKFHPDV--AKQLNNLALLCQNQG-KAEEVEYYYRRALEIYATRL 161 (283)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCCChHH--HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhc
Confidence 3456777777777777654322221222 334455688888887 99999999999887766553
No 44
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=30.09 E-value=86 Score=26.81 Aligned_cols=68 Identities=16% Similarity=0.083 Sum_probs=44.8
Q ss_pred CChhhHHHHHHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHH
Q 007413 384 TKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSH 462 (604)
Q Consensus 384 ~k~~e~vrLyd~ilq~l~ei~eLpgv~~~~~~~d~~l~~~l~a~~~~~~A~rc~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (604)
.++.+-+..|...+..+........ ..|++. ..++- ..+.-.+.+|.+|...|+|.+|+..|.+|+..
T Consensus 25 ~~~~~A~~~y~~al~~~~~~~~~~~------~~~~~~-~~~~~----~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 25 KDYKEAIDAYRDALTRLDTLILREK------PGEPEW-VELDR----KNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTSC------TTSHHH-HHHHH----THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCC------CCHHHH-HHHHH----HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 4789999999999998877653211 122222 11111 11111234899999999999999999999875
No 45
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=29.83 E-value=2.1e+02 Score=26.39 Aligned_cols=27 Identities=19% Similarity=0.052 Sum_probs=24.6
Q ss_pred HHHHHHHHHhhCChHHHHHHHHHHHHH
Q 007413 436 CFYLARSYSLAGKRTEAYALYCRARSH 462 (604)
Q Consensus 436 c~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (604)
.+.+|.+|...|+|.+|+..|.++...
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~ 177 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDA 177 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 577999999999999999999999764
No 46
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=29.79 E-value=2.1e+02 Score=22.66 Aligned_cols=30 Identities=30% Similarity=0.216 Sum_probs=25.3
Q ss_pred HHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q 007413 439 LARSYSLAGKRTEAYALYCRARSHAENALK 468 (604)
Q Consensus 439 lA~sy~~~~K~~EAlaL~~ra~~~~~~a~~ 468 (604)
-|--.-..|+|.||+.+|..|.+++-.+..
T Consensus 19 ~Av~~D~~g~y~eAl~~Y~~aie~l~~a~k 48 (85)
T 2v6x_A 19 KAIDLDTATQYEEAYTAYYNGLDYLMLALK 48 (85)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 444557789999999999999999988875
No 47
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=29.77 E-value=48 Score=27.48 Aligned_cols=26 Identities=19% Similarity=-0.055 Sum_probs=22.8
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHH
Q 007413 437 FYLARSYSLAGKRTEAYALYCRARSH 462 (604)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (604)
+.+|.+|...|++.+|+..|.+|...
T Consensus 55 ~~lg~~~~~~g~~~~A~~~~~~al~l 80 (121)
T 1hxi_A 55 RSLGLTQAENEKDGLAIIALNHARML 80 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34899999999999999999998764
No 48
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=29.62 E-value=84 Score=27.94 Aligned_cols=26 Identities=15% Similarity=0.105 Sum_probs=23.1
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHH
Q 007413 437 FYLARSYSLAGKRTEAYALYCRARSH 462 (604)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (604)
+.+|.+|...|+|.+|+..|.++...
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34999999999999999999999875
No 49
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=29.53 E-value=1.6e+02 Score=24.27 Aligned_cols=55 Identities=16% Similarity=0.150 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC-ChhhHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Q 007413 125 IGRLRKAVKWATLFSNLCAIKA-DPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSAR 184 (604)
Q Consensus 125 ~~RLkKA~~~A~~L~~l~~~~~-d~~t~lEa~aY~a~i~G~~~~E~~~~w~~al~~~s~ar 184 (604)
+.++.+|+.+..+.+++..+.. +.... +.+-+..|..+...+ +|++|++.|..|-
T Consensus 55 ~~~~~~A~~~~~~al~~~~~~~~~~~~~----a~~~~~lg~~~~~~~-~~~~A~~~~~kal 110 (127)
T 4gcn_A 55 EKKFAECVQFCEKAVEVGRETRADYKLI----AKAMSRAGNAFQKQN-DLSLAVQWFHRSL 110 (127)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCHHHH----HHHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcccchhhHHH----HHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Confidence 4567789998888888875443 33322 333355788888887 9999999988764
No 50
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=29.47 E-value=66 Score=26.11 Aligned_cols=23 Identities=22% Similarity=-0.051 Sum_probs=12.5
Q ss_pred HHHHHHhhCChHHHHHHHHHHHH
Q 007413 439 LARSYSLAGKRTEAYALYCRARS 461 (604)
Q Consensus 439 lA~sy~~~~K~~EAlaL~~ra~~ 461 (604)
+|.+|...|+|.+|+..|.++..
T Consensus 44 ~a~~~~~~~~~~~A~~~~~~al~ 66 (126)
T 3upv_A 44 RAAALAKLMSFPEAIADCNKAIE 66 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHH
Confidence 55555555555555555555544
No 51
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=29.31 E-value=50 Score=26.66 Aligned_cols=26 Identities=23% Similarity=0.234 Sum_probs=22.9
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHH
Q 007413 437 FYLARSYSLAGKRTEAYALYCRARSH 462 (604)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (604)
+.+|.+|...|+|.+|+..|.++...
T Consensus 43 ~~lg~~~~~~~~~~~A~~~~~~~~~~ 68 (129)
T 2xev_A 43 YWLGESYYATRNFQLAEAQFRDLVSR 68 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 44899999999999999999998764
No 52
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.13 E-value=1.9e+02 Score=24.88 Aligned_cols=43 Identities=14% Similarity=0.100 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q 007413 426 LKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALK 468 (604)
Q Consensus 426 a~~~~~~A~rc~~lA~sy~~~~K~~EAlaL~~ra~~~~~~a~~ 468 (604)
.+..|=+||+|..-|...-..|+-.+|+.||.+..+++..++.
T Consensus 15 ik~~h~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~eLe~Gl~ 57 (116)
T 2dl1_A 15 IREAYKKAFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGIS 57 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHhcc
Confidence 4567788999888999998899999999999999999998886
No 53
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.81 E-value=1.7e+02 Score=23.65 Aligned_cols=26 Identities=12% Similarity=-0.183 Sum_probs=21.0
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHH
Q 007413 437 FYLARSYSLAGKRTEAYALYCRARSH 462 (604)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (604)
+.+|.+|...|+|.+|+..|.++...
T Consensus 69 ~~~a~~~~~~~~~~~A~~~~~~~~~~ 94 (148)
T 2dba_A 69 RNRAACHLKLEDYDKAETEASKAIEK 94 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHhh
Confidence 44788888889999888888888764
No 54
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=28.44 E-value=1.5e+02 Score=31.12 Aligned_cols=29 Identities=14% Similarity=-0.094 Sum_probs=25.9
Q ss_pred HHHHHHhhCChHHHHHHHHHHHHHHHHHH
Q 007413 439 LARSYSLAGKRTEAYALYCRARSHAENAL 467 (604)
Q Consensus 439 lA~sy~~~~K~~EAlaL~~ra~~~~~~a~ 467 (604)
||.+|...|+|.||+.+|.+++.......
T Consensus 335 L~~~y~~~g~~~eA~~~~~~~L~i~~~~l 363 (429)
T 3qwp_A 335 AMDACINLGLLEEALFYGTRTMEPYRIFF 363 (429)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhHHHHc
Confidence 88999999999999999999998776554
No 55
>2rkl_A Vacuolar protein sorting-associated protein VTA1; dimerization motif, cytoplasm, endosome, lipid transport, membrane, protein transport; 1.50A {Saccharomyces cerevisiae} PDB: 3mhv_A
Probab=28.39 E-value=69 Score=23.74 Aligned_cols=39 Identities=18% Similarity=0.214 Sum_probs=33.0
Q ss_pred ChhhHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Q 007413 147 DPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYE 188 (604)
Q Consensus 147 d~~t~lEa~aY~a~i~G~~~~E~~~~w~~al~~~s~ar~iy~ 188 (604)
+.....+++-|+.|.-+.+.|| +|..|.+.+..|-.++.
T Consensus 13 ~~~~i~~AqK~aK~AiSAL~fe---Dv~tA~~~L~~AL~lL~ 51 (53)
T 2rkl_A 13 RASKIEQIQKLAKYAISALNYE---DLPTAKDELTKALDLLN 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcccc---cHHHHHHHHHHHHHHHh
Confidence 4456788999999999999993 88999999998877664
No 56
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=28.22 E-value=52 Score=27.78 Aligned_cols=26 Identities=15% Similarity=0.055 Sum_probs=23.2
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHH
Q 007413 437 FYLARSYSLAGKRTEAYALYCRARSH 462 (604)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (604)
+.+|.+|...|+|.+|+..|.++...
T Consensus 56 ~~lg~~~~~~g~~~~A~~~~~~al~~ 81 (142)
T 2xcb_A 56 LGLGACRQSLGLYEQALQSYSYGALM 81 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34899999999999999999999774
No 57
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=28.05 E-value=1e+02 Score=26.54 Aligned_cols=30 Identities=30% Similarity=0.212 Sum_probs=25.2
Q ss_pred HHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q 007413 439 LARSYSLAGKRTEAYALYCRARSHAENALK 468 (604)
Q Consensus 439 lA~sy~~~~K~~EAlaL~~ra~~~~~~a~~ 468 (604)
-|--.-..|+|.||+.||..|.+++-.+..
T Consensus 24 ~Ave~D~ag~y~eAl~lY~~Aie~l~~alk 53 (117)
T 2cpt_A 24 KAAQEDKAGNYEEALQLYQHAVQYFLHVVK 53 (117)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHHHH
Confidence 444556789999999999999999988875
No 58
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=27.99 E-value=51 Score=29.03 Aligned_cols=26 Identities=27% Similarity=0.241 Sum_probs=23.2
Q ss_pred HHHHHHHhhCChHHHHHHHHHHHHHH
Q 007413 438 YLARSYSLAGKRTEAYALYCRARSHA 463 (604)
Q Consensus 438 ~lA~sy~~~~K~~EAlaL~~ra~~~~ 463 (604)
.+|.+|...|+|.+|+..|.+|...-
T Consensus 75 ~lg~~~~~~g~~~~Ai~~~~~al~l~ 100 (151)
T 3gyz_A 75 GLAAIYQIKEQFQQAADLYAVAFALG 100 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHccHHHHHHHHHHHHhhC
Confidence 48999999999999999999997743
No 59
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=27.84 E-value=48 Score=28.95 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=23.2
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHH
Q 007413 437 FYLARSYSLAGKRTEAYALYCRARSH 462 (604)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (604)
+.+|.+|...|++.+|+..|.+|++.
T Consensus 145 ~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 145 QSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 34899999999999999999999764
No 60
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=27.60 E-value=1e+02 Score=29.58 Aligned_cols=30 Identities=17% Similarity=0.160 Sum_probs=26.0
Q ss_pred HHH-HHHHHHhhCChHHHHHHHHHHHHHHHH
Q 007413 436 CFY-LARSYSLAGKRTEAYALYCRARSHAEN 465 (604)
Q Consensus 436 c~~-lA~sy~~~~K~~EAlaL~~ra~~~~~~ 465 (604)
++. ||.+|...|+|.+|+..|.+|++....
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 187 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEA 187 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 444 999999999999999999999986653
No 61
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=27.56 E-value=53 Score=28.33 Aligned_cols=27 Identities=22% Similarity=0.086 Sum_probs=24.0
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHHH
Q 007413 437 FYLARSYSLAGKRTEAYALYCRARSHA 463 (604)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~~ 463 (604)
+.+|.+|...|++.+|+..|.++....
T Consensus 93 ~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 93 FHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 558999999999999999999997654
No 62
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=27.37 E-value=54 Score=28.29 Aligned_cols=26 Identities=15% Similarity=0.060 Sum_probs=23.2
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHH
Q 007413 437 FYLARSYSLAGKRTEAYALYCRARSH 462 (604)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (604)
+.+|.+|...|+|.+|+..|.++...
T Consensus 59 ~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 59 LGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 35899999999999999999999774
No 63
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=27.34 E-value=56 Score=27.34 Aligned_cols=26 Identities=15% Similarity=-0.008 Sum_probs=22.9
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHH
Q 007413 437 FYLARSYSLAGKRTEAYALYCRARSH 462 (604)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (604)
+.+|.+|...|+|.+|+..|.++++.
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34899999999999999999999763
No 64
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=27.31 E-value=1.2e+02 Score=24.36 Aligned_cols=26 Identities=19% Similarity=0.093 Sum_probs=22.9
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHH
Q 007413 437 FYLARSYSLAGKRTEAYALYCRARSH 462 (604)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (604)
.++|.+|...|++.+|+.++.+++..
T Consensus 50 ~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 50 DYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 46899999999999999999999763
No 65
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=25.92 E-value=84 Score=24.77 Aligned_cols=25 Identities=20% Similarity=0.117 Sum_probs=14.5
Q ss_pred HHHHHHhhCChHHHHHHHHHHHHHH
Q 007413 439 LARSYSLAGKRTEAYALYCRARSHA 463 (604)
Q Consensus 439 lA~sy~~~~K~~EAlaL~~ra~~~~ 463 (604)
+|.+|...|+|.+|+..|.++....
T Consensus 44 la~~~~~~~~~~~A~~~~~~~~~~~ 68 (131)
T 1elr_A 44 QAAVYFEKGDYNKCRELCEKAIEVG 68 (131)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhc
Confidence 5556666666666666665555443
No 66
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=25.81 E-value=69 Score=24.99 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=21.5
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHH
Q 007413 437 FYLARSYSLAGKRTEAYALYCRARSH 462 (604)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (604)
+.+|..|...|+|.+|+.+|.++...
T Consensus 13 ~~~~~~~~~~~~~~~A~~~~~~~~~~ 38 (125)
T 1na0_A 13 YNLGNAYYKQGDYDEAIEYYQKALEL 38 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45888888899999999999888764
No 67
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=25.60 E-value=79 Score=26.24 Aligned_cols=31 Identities=29% Similarity=0.171 Sum_probs=28.2
Q ss_pred HHHHHHhhCChHHHHHHHHHHHHHHHHHHHH
Q 007413 439 LARSYSLAGKRTEAYALYCRARSHAENALKD 469 (604)
Q Consensus 439 lA~sy~~~~K~~EAlaL~~ra~~~~~~a~~~ 469 (604)
-|..+...|||.||+..+..|..++.+|.+.
T Consensus 21 rAe~ll~~gkydeAIech~kAa~yL~eAmkl 51 (97)
T 2crb_A 21 RADRLLAAGKYEEAISCHRKATTYLSEAMKL 51 (97)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 5788888999999999999999999999864
No 68
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=25.22 E-value=1.2e+02 Score=29.06 Aligned_cols=27 Identities=15% Similarity=0.036 Sum_probs=24.9
Q ss_pred HHHHHHHhhCChHHHHHHHHHHHHHHH
Q 007413 438 YLARSYSLAGKRTEAYALYCRARSHAE 464 (604)
Q Consensus 438 ~lA~sy~~~~K~~EAlaL~~ra~~~~~ 464 (604)
.+|.+|...|+|.+|+..|++|.....
T Consensus 201 nlg~~y~~~~~y~~Al~~~~kal~~~~ 227 (293)
T 2qfc_A 201 NHAKALYLDSRYEESLYQVNKAIEISC 227 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 499999999999999999999998764
No 69
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=24.96 E-value=85 Score=24.75 Aligned_cols=25 Identities=16% Similarity=0.022 Sum_probs=16.3
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHH
Q 007413 437 FYLARSYSLAGKRTEAYALYCRARS 461 (604)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~ 461 (604)
+.+|..|...|+|.+|+.+|.++..
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~ 32 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKE 32 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 3366666666777777776666655
No 70
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=23.78 E-value=1.7e+02 Score=26.08 Aligned_cols=45 Identities=22% Similarity=0.248 Sum_probs=37.5
Q ss_pred HHHHHHHHHHH-HHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhh
Q 007413 428 SLAFRAERCFY-LARSYSLAGKRTEAYALYCRARSHAENALKDFQR 472 (604)
Q Consensus 428 ~~~~~A~rc~~-lA~sy~~~~K~~EAlaL~~ra~~~~~~a~~~~~~ 472 (604)
..||++..... .|..|...|....|+.||-|..+.+-+.++.-++
T Consensus 34 ~~ylrta~~llr~A~~y~~egd~e~AYily~R~~~L~~e~IpkHpd 79 (146)
T 2xze_A 34 RRYFRSGVEIIRMASIYSEEGNIEHAFILYNKYITLFIEKLPKHRD 79 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTGGGSTT
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHcccCcc
Confidence 36777777666 9999999999999999999999999877764333
No 71
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=23.60 E-value=79 Score=25.20 Aligned_cols=26 Identities=19% Similarity=0.092 Sum_probs=22.7
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHH
Q 007413 437 FYLARSYSLAGKRTEAYALYCRARSH 462 (604)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (604)
+.+|.+|...|+|.+|+..|.++...
T Consensus 88 ~~la~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 88 TRKAAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 44899999999999999999998764
No 72
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=23.56 E-value=72 Score=26.60 Aligned_cols=25 Identities=8% Similarity=-0.242 Sum_probs=22.3
Q ss_pred HHHHHHHhhCChHHHHHHHHHHHHH
Q 007413 438 YLARSYSLAGKRTEAYALYCRARSH 462 (604)
Q Consensus 438 ~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (604)
.+|.+|...|+|.+|+..|.+|.+.
T Consensus 52 ~~~~~~~~~~~~~~A~~~~~~al~~ 76 (126)
T 4gco_A 52 NRAACLTKLMEFQRALDDCDTCIRL 76 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhHHHhhccHHHHHHHHHHHHHh
Confidence 4899999999999999999998764
No 73
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=23.44 E-value=1.5e+02 Score=28.28 Aligned_cols=29 Identities=14% Similarity=0.095 Sum_probs=25.7
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 007413 437 FYLARSYSLAGKRTEAYALYCRARSHAEN 465 (604)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~~~~ 465 (604)
+.+|.+|...|+|.+|+..|.+|++....
T Consensus 200 ~nlg~~y~~~~~y~~A~~~~~~al~~~~~ 228 (293)
T 3u3w_A 200 YNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 45999999999999999999999987653
No 74
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=23.43 E-value=70 Score=27.44 Aligned_cols=25 Identities=20% Similarity=-0.148 Sum_probs=22.6
Q ss_pred HHHHHHHhhCChHHHHHHHHHHHHH
Q 007413 438 YLARSYSLAGKRTEAYALYCRARSH 462 (604)
Q Consensus 438 ~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (604)
.+|.+|...|+|.+|+..|.+++..
T Consensus 102 ~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 102 RRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 3899999999999999999999775
No 75
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=23.16 E-value=82 Score=24.77 Aligned_cols=26 Identities=27% Similarity=0.153 Sum_probs=22.9
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHH
Q 007413 437 FYLARSYSLAGKRTEAYALYCRARSH 462 (604)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (604)
+.+|.+|...|+|.+|+..|.++...
T Consensus 84 ~~~~~~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 84 GRMGLALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 45899999999999999999998764
No 76
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=23.00 E-value=80 Score=24.22 Aligned_cols=26 Identities=8% Similarity=-0.061 Sum_probs=22.7
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHH
Q 007413 437 FYLARSYSLAGKRTEAYALYCRARSH 462 (604)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (604)
+..|..|...|+|.+|+.+|.++.+.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~ 29 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQT 29 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45788999999999999999998764
No 77
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=22.85 E-value=77 Score=27.22 Aligned_cols=26 Identities=23% Similarity=0.088 Sum_probs=21.0
Q ss_pred HHHHHHHhhCChHHHHHHHHHHHHHH
Q 007413 438 YLARSYSLAGKRTEAYALYCRARSHA 463 (604)
Q Consensus 438 ~lA~sy~~~~K~~EAlaL~~ra~~~~ 463 (604)
.+|.+|...|+|.+|+..|.++...-
T Consensus 50 ~l~~~~~~~g~~~~A~~~~~~al~~~ 75 (164)
T 3sz7_A 50 NRAAAYSASGQHEKAAEDAELATVVD 75 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 47888888888888888888887653
No 78
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=22.72 E-value=1.1e+02 Score=23.49 Aligned_cols=23 Identities=17% Similarity=0.137 Sum_probs=13.5
Q ss_pred HHHHHHhhCChHHHHHHHHHHHH
Q 007413 439 LARSYSLAGKRTEAYALYCRARS 461 (604)
Q Consensus 439 lA~sy~~~~K~~EAlaL~~ra~~ 461 (604)
+|..|...|+|.+|+.+|.++..
T Consensus 10 ~~~~~~~~~~~~~A~~~~~~~~~ 32 (118)
T 1elw_A 10 KGNKALSVGNIDDALQCYSEAIK 32 (118)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHH
Confidence 55555556666666666665544
No 79
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=22.63 E-value=86 Score=24.14 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=22.4
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHH
Q 007413 437 FYLARSYSLAGKRTEAYALYCRARSH 462 (604)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (604)
+.+|.+|...|+|.+|+..|.++...
T Consensus 42 ~~~a~~~~~~~~~~~A~~~~~~~~~~ 67 (118)
T 1elw_A 42 SNRSAAYAKKGDYQKAYEDGCKTVDL 67 (118)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 34788999999999999999998764
No 80
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=22.62 E-value=96 Score=26.55 Aligned_cols=28 Identities=21% Similarity=0.059 Sum_probs=24.3
Q ss_pred HHHHHHHHHhhCChHHHHHHHHHHHHHH
Q 007413 436 CFYLARSYSLAGKRTEAYALYCRARSHA 463 (604)
Q Consensus 436 c~~lA~sy~~~~K~~EAlaL~~ra~~~~ 463 (604)
.+.+|..|...|+|.+|+..|.++....
T Consensus 14 ~~~~g~~~~~~g~~~~A~~~~~~al~~~ 41 (164)
T 3sz7_A 14 LKSEGNAAMARKEYSKAIDLYTQALSIA 41 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4558999999999999999999998754
No 81
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=22.60 E-value=87 Score=24.37 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=22.5
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHH
Q 007413 437 FYLARSYSLAGKRTEAYALYCRARSH 462 (604)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (604)
+.+|.+|...|+|.+|+.+|.++...
T Consensus 47 ~~la~~~~~~~~~~~A~~~~~~~~~~ 72 (125)
T 1na0_A 47 YNLGNAYYKQGDYDEAIEYYQKALEL 72 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 45899999999999999999998753
No 82
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=22.50 E-value=80 Score=25.35 Aligned_cols=26 Identities=27% Similarity=0.170 Sum_probs=22.5
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHH
Q 007413 437 FYLARSYSLAGKRTEAYALYCRARSH 462 (604)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (604)
+.+|.+|...|++.+|...|.++...
T Consensus 80 ~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 80 LKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45899999999999999999988663
No 83
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=22.36 E-value=3.2e+02 Score=26.16 Aligned_cols=76 Identities=12% Similarity=-0.006 Sum_probs=0.0
Q ss_pred CCCChhhHHHHHHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHH---HHHHHHHHH-HHHHHHhhCChHHHHHHHH
Q 007413 382 KVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSL---AFRAERCFY-LARSYSLAGKRTEAYALYC 457 (604)
Q Consensus 382 k~~k~~e~vrLyd~ilq~l~ei~eLpgv~~~~~~~d~~l~~~l~a~~~---~~~A~rc~~-lA~sy~~~~K~~EAlaL~~ 457 (604)
+...+.+....|.++-..+..+.+... .-..|...++.... ...+..++. +|.+|.. |+|.+|+..|.
T Consensus 68 ~~~~~~~~a~~~~~lg~~~~~~g~~~~-------A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 68 NNRSLFHAAKAFEQAGMMLKDLQRMPE-------AVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ 139 (307)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCGGG-------GHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhCCCHHH-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Q ss_pred HHHHHHHH
Q 007413 458 RARSHAEN 465 (604)
Q Consensus 458 ra~~~~~~ 465 (604)
+|+.....
T Consensus 140 ~Al~~~~~ 147 (307)
T 2ifu_A 140 QAAAVFEN 147 (307)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
No 84
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=22.21 E-value=1.6e+02 Score=26.63 Aligned_cols=34 Identities=15% Similarity=0.219 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Q 007413 154 AEAYASYMKGNLLFEQDQNWETALKNFKSARAVYE 188 (604)
Q Consensus 154 a~aY~a~i~G~~~~E~~~~w~~al~~~s~ar~iy~ 188 (604)
++||...-.|..+|..+ +|++|+..|..|-.+-.
T Consensus 9 ~~a~~~~~~G~~l~~~g-~~eeAi~~Y~kAL~l~p 42 (159)
T 2hr2_A 9 VGAYLALSDAQRQLVAG-EYDEAAANCRRAMEISH 42 (159)
T ss_dssp HHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhhCC
Confidence 47899999999999997 99999999988766543
No 85
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=22.02 E-value=56 Score=25.12 Aligned_cols=26 Identities=23% Similarity=0.161 Sum_probs=22.9
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHH
Q 007413 437 FYLARSYSLAGKRTEAYALYCRARSH 462 (604)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (604)
+.+|.+|...|+|.+|+..|.++...
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~~ 35 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQL 35 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 34899999999999999999999864
No 86
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=21.70 E-value=2.2e+02 Score=28.14 Aligned_cols=30 Identities=17% Similarity=0.121 Sum_probs=25.9
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 007413 437 FYLARSYSLAGKRTEAYALYCRARSHAENA 466 (604)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~~~~a 466 (604)
..+|..|...|+|.+|+..|.++.+.-.+.
T Consensus 340 ~~la~~y~~~g~~~~A~~~~~~al~~~~~~ 369 (378)
T 3q15_A 340 RSAAAVFESSCHFEQAAAFYRKVLKAQEDI 369 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999999998866544
No 87
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=21.65 E-value=90 Score=24.48 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=18.9
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHH
Q 007413 437 FYLARSYSLAGKRTEAYALYCRARS 461 (604)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~ 461 (604)
+.+|..|...|++.+|+.+|.++..
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~ 29 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALE 29 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 4477777788888888888887765
No 88
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=21.09 E-value=1.1e+02 Score=24.80 Aligned_cols=23 Identities=30% Similarity=0.229 Sum_probs=11.8
Q ss_pred HHHHHHhhCChHHHHHHHHHHHH
Q 007413 439 LARSYSLAGKRTEAYALYCRARS 461 (604)
Q Consensus 439 lA~sy~~~~K~~EAlaL~~ra~~ 461 (604)
+|..|...|+|.+|+..|.++..
T Consensus 15 ~g~~~~~~~~~~~A~~~~~~al~ 37 (137)
T 3q49_B 15 QGNRLFVGRKYPEAAACYGRAIT 37 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHh
Confidence 45555555555555555555444
No 89
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=20.79 E-value=98 Score=24.27 Aligned_cols=26 Identities=27% Similarity=0.089 Sum_probs=22.9
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHH
Q 007413 437 FYLARSYSLAGKRTEAYALYCRARSH 462 (604)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (604)
+.+|.+|...|+|.+|+..|.++...
T Consensus 50 ~~~a~~~~~~~~~~~A~~~~~~~~~~ 75 (131)
T 2vyi_A 50 CNRAAAYSKLGNYAGAVQDCERAICI 75 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhc
Confidence 45899999999999999999999764
No 90
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=20.59 E-value=93 Score=28.05 Aligned_cols=25 Identities=20% Similarity=0.093 Sum_probs=22.5
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHH
Q 007413 437 FYLARSYSLAGKRTEAYALYCRARS 461 (604)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~ 461 (604)
|+||-.|...|.|.+|+..++++++
T Consensus 75 Y~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 75 FYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHh
Confidence 5699999999999999999998866
No 91
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=20.46 E-value=1.1e+02 Score=24.78 Aligned_cols=28 Identities=32% Similarity=0.239 Sum_probs=24.6
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHHHH
Q 007413 437 FYLARSYSLAGKRTEAYALYCRARSHAE 464 (604)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~~~ 464 (604)
+.+|.+|...|+|.+|+..|.++.....
T Consensus 81 ~~l~~~~~~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 81 FFLGQCQLEMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHCh
Confidence 3489999999999999999999988664
No 92
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=20.28 E-value=79 Score=25.18 Aligned_cols=26 Identities=12% Similarity=-0.207 Sum_probs=22.9
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHH
Q 007413 437 FYLARSYSLAGKRTEAYALYCRARSH 462 (604)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (604)
+.+|.+|...|+|.+|+..|.++...
T Consensus 54 ~~la~~~~~~~~~~~A~~~~~~a~~~ 79 (133)
T 2lni_A 54 SNRAACYTKLLEFQLALKDCEECIQL 79 (133)
T ss_dssp HHHHHHHTTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34899999999999999999999874
No 93
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.25 E-value=97 Score=25.27 Aligned_cols=26 Identities=15% Similarity=0.101 Sum_probs=22.5
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHH
Q 007413 437 FYLARSYSLAGKRTEAYALYCRARSH 462 (604)
Q Consensus 437 ~~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (604)
+.+|.+|...|+|.+|+..|.++...
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 35889999999999999999988764
No 94
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=20.19 E-value=90 Score=26.75 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=22.5
Q ss_pred HHHHHHHhhCChHHHHHHHHHHHHH
Q 007413 438 YLARSYSLAGKRTEAYALYCRARSH 462 (604)
Q Consensus 438 ~lA~sy~~~~K~~EAlaL~~ra~~~ 462 (604)
.+|.+|...|+|.+|+..|.++.+.
T Consensus 70 ~lg~~~~~~~~~~~A~~~~~~al~~ 94 (150)
T 4ga2_A 70 FLGLLYELEENTDKAVECYRRSVEL 94 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHh
Confidence 4899999999999999999999764
Done!