BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007414
(604 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 78/197 (39%), Gaps = 13/197 (6%)
Query: 373 EHA------FAGALAGVFVSLCLHPVDTVKTVIQS-----CHTEQKSIVYIGRSIVSERG 421
EHA AG+ G P D VK Q+ +S V ++I E G
Sbjct: 100 EHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEG 159
Query: 422 LTGLYRGXXXXXXXXXXXXXVYAFTYESVKGALLPHLPKEFHSLAHCTAGGCASVATSFI 481
+ GL++G TY+ +K LL H T+ A T+ I
Sbjct: 160 IRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVI 219
Query: 482 FTPSERIKQQMQVGS--RYHNCWNALVGIIKNGGLHSLYAGWGAVLCRNVPHSIVKFYTY 539
+P + +K + + +YH+ + + +++ G + Y G+ R ++V F TY
Sbjct: 220 ASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTY 279
Query: 540 ESLKQMMLPSLKPGAQP 556
E LK+ ++ + + P
Sbjct: 280 EQLKRALMAAYQSREAP 296
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 496 SRYHNCWNALVGIIKNGGLHSLYAGWGAVLCRNVPHSIVKFYTYESLKQM 545
++Y ++ +++ G SLY G A L R + + V+ Y+S+KQ
Sbjct: 45 AQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQF 94
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 75/188 (39%), Gaps = 26/188 (13%)
Query: 377 AGALAGVFVSLC-LHPVDTVKTVIQS---CHTEQKSIVYIGR---SIVSERGLTGLYRGX 429
+G AG SLC ++P+D +T + + Q+ +G I GL GLY+G
Sbjct: 118 SGGAAGA-TSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGF 176
Query: 430 XXXXXXXXXXXXVYAFTYESVKGALLPHLPKEFHSLAHCTAGGCASVATSFIFTPSERIK 489
Y Y++ KG +LP PK H + + + P + ++
Sbjct: 177 NVSVQGIIIYRAAYFGVYDTAKG-MLPD-PKNVHIIVSWMIAQTVTAVAGLVSYPFDTVR 234
Query: 490 QQMQVGSRYH----------NCWNALVGIIKNGGLHSLYAG-WGAVLCRNVPHSIVKFYT 538
++M + S +CW I K+ G + + G W VL R + + V
Sbjct: 235 RRMMMQSGRKGADIMYTGTVDCWRK---IAKDEGPKAFFKGAWSNVL-RGMGGAFV-LVL 289
Query: 539 YESLKQMM 546
Y+ +K+ +
Sbjct: 290 YDEIKKFV 297
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 9/95 (9%)
Query: 465 LAHCTAGGCASVATSFIFTPSERIKQQMQVG---------SRYHNCWNALVGIIKNGGLH 515
L AGG A+ + P ER+K +QV +Y + +V I K G
Sbjct: 8 LKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFL 67
Query: 516 SLYAGWGAVLCRNVPHSIVKFYTYESLKQMMLPSL 550
S + G A + R P + F + KQ+ L +
Sbjct: 68 SFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGV 102
>pdb|1PFF|A Chain A, Crystal Structure Of Homocysteine Alpha-, Gamma-Lyase At
1.8 Angstroms
pdb|1PFF|B Chain B, Crystal Structure Of Homocysteine Alpha-, Gamma-Lyase At
1.8 Angstroms
Length = 331
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 161 STFWTFLRSGASLSNDTCVWGLASAGIPYQL 191
++ WTFL++G L +D C++G A +QL
Sbjct: 28 ASVWTFLKAGDHLISDDCLYGCTHALFEHQL 58
>pdb|1WXR|A Chain A, Crystal Structure Of Heme Binding Protein, An
Autotransporter Hemoglobine Protease From Pathogenic
Escherichia Coli
Length = 1048
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 338 ENKRNQSDKNVVEDENKMEFHSPKTEKPHLSLAKQEHAFAGALAGVFVSLCLHPV 392
EN+ N D+N + ++FH+P+ +K +A GA+AG ++ +PV
Sbjct: 86 ENRYNIVDRN---NAPSLDFHAPRLDKLVTEVAPTAVTAQGAVAGAYLDKERYPV 137
>pdb|3AK5|A Chain A, Hemoglobin Protease (Hbp) Passenger Missing Domain-2
pdb|3AK5|B Chain B, Hemoglobin Protease (Hbp) Passenger Missing Domain-2
pdb|3AK5|C Chain C, Hemoglobin Protease (Hbp) Passenger Missing Domain-2
pdb|3AK5|D Chain D, Hemoglobin Protease (Hbp) Passenger Missing Domain-2
Length = 975
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 338 ENKRNQSDKNVVEDENKMEFHSPKTEKPHLSLAKQEHAFAGALAGVFVSLCLHPV 392
EN+ N D+N + ++FH+P+ +K +A GA+AG ++ +PV
Sbjct: 86 ENRYNIVDRN---NAPSLDFHAPRLDKLVTEVAPTAVTAQGAVAGAYLDKERYPV 137
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.130 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,772,215
Number of Sequences: 62578
Number of extensions: 650192
Number of successful extensions: 1461
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1453
Number of HSP's gapped (non-prelim): 10
length of query: 604
length of database: 14,973,337
effective HSP length: 104
effective length of query: 500
effective length of database: 8,465,225
effective search space: 4232612500
effective search space used: 4232612500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)