Query 007414
Match_columns 604
No_of_seqs 407 out of 2876
Neff 6.7
Searched_HMMs 29240
Date Tue Mar 26 01:13:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007414.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007414hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 2.4E-46 8.2E-51 389.0 13.4 259 257-549 23-289 (303)
2 1okc_A ADP, ATP carrier protei 100.0 5.2E-45 1.8E-49 377.4 14.5 265 237-546 20-297 (297)
3 1okc_A ADP, ATP carrier protei 100.0 6E-38 2.1E-42 324.5 19.8 216 369-589 5-240 (297)
4 2lck_A Mitochondrial uncouplin 100.0 9.6E-38 3.3E-42 324.2 16.5 213 374-590 4-234 (303)
5 3vjj_A P9-1; 3.00A {Rice black 8.3 2E+02 0.0068 28.7 2.9 36 476-514 273-308 (368)
6 1tlq_A Hypothetical protein YP 8.1 2.9E+02 0.0099 25.9 3.8 44 346-390 117-161 (189)
7 3tgu_G UQCRQ, mitochondrial ub 7.5 3E+02 0.01 22.2 3.2 37 513-549 33-69 (81)
8 3k7b_A Protein A33; C-type lec 7.1 1.7E+02 0.0058 24.5 1.5 32 91-124 61-93 (96)
9 1b5e_A Protein (deoxycytidylat 6.6 3E+02 0.01 26.8 3.3 37 158-199 57-100 (246)
10 1y9i_A Low temperature require 5.7 2.9E+02 0.0098 25.7 2.4 42 439-480 112-158 (178)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=2.4e-46 Score=388.98 Aligned_cols=259 Identities=20% Similarity=0.270 Sum_probs=220.9
Q ss_pred cceEeecccCccccee-eecccCCCCchHHHHHHHHhhcCCcccccccchhhhhhhhhccccccchhhhHHHhhhhhhhh
Q 007414 257 DLSKSKGQSSCFNAKL-MMSTRTTKSLLSDYFLKDVSDMKEDCDVTRQPCSSLCADYCINSVASSNGTCEKCRHLMDDDA 335 (604)
Q Consensus 257 DlvktrlQ~pLDtiKv-rmQ~~~~y~g~~~~~~~i~r~EG~l~gLYRGl~~~L~~~~~~~~~~iyf~tYe~~r~~l~~~~ 335 (604)
|++|+|+|.+-..... .......|+++++++++++++||+ +|||||+.+++++... ..++||++||.+|+.+.+.
T Consensus 23 d~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~-~glyrG~~~~l~~~~~--~~~i~f~~ye~~k~~~~~~- 98 (303)
T 2lck_A 23 DTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGP-RSLYNGLVAGLQRQMS--FASVRIGLYDSVKQFYTKG- 98 (303)
T ss_dssp HHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCH-HHHHSSHHHHHHHHHH--HHHHTTTHHHHHHHHHSCC-
T ss_pred HHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCH-HHHHcCCHHHHHHHHH--HHHHHHHHHHHHHHHHhcC-
Confidence 7777666654221000 000013689999999999999997 9999999999999744 6688888888888765211
Q ss_pred hhhhhhccccchhhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHcCCC-----CCCchh
Q 007414 336 LLENKRNQSDKNVVEDENKMEFHSPKTEKPHLSLAKQEHAFAGALAGVFVSLCLHPVDTVKTVIQSCHT-----EQKSIV 410 (604)
Q Consensus 336 l~~~~~~~ai~F~~yd~~k~~l~~~~~~~~~~~l~~~~~~laG~lAG~vs~~i~~PlDvIKtRlQ~~~~-----~~~g~~ 410 (604)
.+ ..+.+..+++|++||+++.++++|+|+||+|||++.. .|++++
T Consensus 99 -------------------------~~-----~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~ 148 (303)
T 2lck_A 99 -------------------------SE-----HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTV 148 (303)
T ss_dssp -------------------------CS-----SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHH
T ss_pred -------------------------Cc-----CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHH
Confidence 00 1256789999999999999999999999999999753 689999
Q ss_pred HHHHHHhhhcCccccccccccccccccccchhHHHHHHHHhhhhcCCCCccccchhhhhhhHHHHHHHHHhhccHHHHHH
Q 007414 411 YIGRSIVSERGLTGLYRGIASNIASSAPISAVYAFTYESVKGALLPHLPKEFHSLAHCTAGGCASVATSFIFTPSERIKQ 490 (604)
Q Consensus 411 ~~~k~I~k~eGl~gLYrGl~~~ll~~~~~~ai~f~~Ye~lK~~l~~~~~~~~~~~~~~~aG~lAg~va~~it~PlDvVKt 490 (604)
+++++|+++||++|||||+.+++++.+|+.+++|.+||.+|+.+........+....+++|++||++++++++|+|+||+
T Consensus 149 ~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvkt 228 (303)
T 2lck_A 149 EAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKT 228 (303)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 99999999999999999999999999999999999999999998765444455677899999999999999999999999
Q ss_pred hhhCCC--CCcCHHHHHHHHHHhhcccccccCHHHHHhhHHhhHhHHHHHHHHHHHHHccC
Q 007414 491 QMQVGS--RYHNCWNALVGIIKNGGLHSLYAGWGAVLCRNVPHSIVKFYTYESLKQMMLPS 549 (604)
Q Consensus 491 RmQ~~~--~y~s~~~~~~~I~r~eGl~gLyrG~~p~llr~~p~~~i~f~~YE~lk~~l~~~ 549 (604)
|||++. .|.++++|+++|+++||++|||||+.|+++|.+|.++++|.+||.+|+.+.+.
T Consensus 229 rlq~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~~ 289 (303)
T 2lck_A 229 RYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAA 289 (303)
T ss_dssp HHTTCCSSSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHhccccccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 999975 59999999999999999999999999999999999999999999999988654
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=5.2e-45 Score=377.44 Aligned_cols=265 Identities=16% Similarity=0.193 Sum_probs=215.2
Q ss_pred ccCCCCCCCCCcccccCCcccceEeecccCcccceeeecccCCCCchHHHHHHHHhhcCCcccccccchhhhhhhhhccc
Q 007414 237 ISGDTLSPASKPATEDHNKSDLSKSKGQSSCFNAKLMMSTRTTKSLLSDYFLKDVSDMKEDCDVTRQPCSSLCADYCINS 316 (604)
Q Consensus 237 i~~~~~~p~~~lAs~s~~~~DlvktrlQ~pLDtiKvrmQ~~~~y~g~~~~~~~i~r~EG~l~gLYRGl~~~L~~~~~~~~ 316 (604)
++..+++|+ |++|+|+|.+-.... ......|+++++++++++++||+ +|||||+.+++++... .
T Consensus 20 ~~~~~~~Pl-----------d~vKtrlQ~~~~~~~--~~~~~~~~~~~~~~~~i~~~eG~-~glyrG~~~~l~~~~~--~ 83 (297)
T 1okc_A 20 ISKTAVAPI-----------ERVKLLLQVQHASKQ--ISAEKQYKGIIDCVVRIPKEQGF-LSFWRGNLANVIRYFP--T 83 (297)
T ss_dssp HHHHHTHHH-----------HHHHHHHHHGGGCSS--CCGGGSCCSHHHHHHHHHHHHCG-GGGGTTTHHHHHHHHH--H
T ss_pred HHHHhcCcH-----------HHHHHHHHhcccccc--cccccccccHHHHHHHHHhccch-hheecccHHHHHHHHH--H
Confidence 455456666 777777775421100 00114689999999999999997 9999999999999744 6
Q ss_pred cccchhhhHHHhhhhhhhhhhhhhhccccchhhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHchHHHHH
Q 007414 317 VASSNGTCEKCRHLMDDDALLENKRNQSDKNVVEDENKMEFHSPKTEKPHLSLAKQEHAFAGALAGVFVSLCLHPVDTVK 396 (604)
Q Consensus 317 ~~iyf~tYe~~r~~l~~~~l~~~~~~~ai~F~~yd~~k~~l~~~~~~~~~~~l~~~~~~laG~lAG~vs~~i~~PlDvIK 396 (604)
.++||++||.+|+.+... . +............+++|++||+++.++++|+|+||
T Consensus 84 ~~~~f~~ye~~k~~~~~~-----~---------------------~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vk 137 (297)
T 1okc_A 84 QALNFAFKDKYKQIFLGG-----V---------------------DRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFAR 137 (297)
T ss_dssp HHHHHHHHHHHHHHHHTT-----C---------------------CTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccc-----c---------------------CcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHH
Confidence 788999999888743111 0 00011112456789999999999999999999999
Q ss_pred HHHHcCC------CCCCchhHHHHHHhhhcCccccccccccccccccccchhHHHHHHHHhhhhcCCCCccccchhhhhh
Q 007414 397 TVIQSCH------TEQKSIVYIGRSIVSERGLTGLYRGIASNIASSAPISAVYAFTYESVKGALLPHLPKEFHSLAHCTA 470 (604)
Q Consensus 397 tRlQ~~~------~~~~g~~~~~k~I~k~eGl~gLYrGl~~~ll~~~~~~ai~f~~Ye~lK~~l~~~~~~~~~~~~~~~a 470 (604)
+|||++. ..|+++++++++|+++||++|||||+.+++++.+|+++++|.+||.+|+.+.+. ...+.+..+++
T Consensus 138 trlq~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~--~~~~~~~~~~~ 215 (297)
T 1okc_A 138 TRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP--KNVHIIVSWMI 215 (297)
T ss_dssp HHHHHCCCSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG--GCSCHHHHHHH
T ss_pred HHHhccccCCCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC--CCccHHHHHHH
Confidence 9999974 257899999999999999999999999999999999999999999999977532 23455678899
Q ss_pred hHHHHHHHHHhhccHHHHHHhhhCCC-------CCcCHHHHHHHHHHhhcccccccCHHHHHhhHHhhHhHHHHHHHHHH
Q 007414 471 GGCASVATSFIFTPSERIKQQMQVGS-------RYHNCWNALVGIIKNGGLHSLYAGWGAVLCRNVPHSIVKFYTYESLK 543 (604)
Q Consensus 471 G~lAg~va~~it~PlDvVKtRmQ~~~-------~y~s~~~~~~~I~r~eGl~gLyrG~~p~llr~~p~~~i~f~~YE~lk 543 (604)
|++||++++++++|+||||+|||++. .|.++++|+++|+++||++|||||+.|+++|. +.++++|.+||.+|
T Consensus 216 g~~ag~~a~~~t~P~dvvktr~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k 294 (297)
T 1okc_A 216 AQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIK 294 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHH
Confidence 99999999999999999999999864 58999999999999999999999999999996 56899999999998
Q ss_pred HHH
Q 007414 544 QMM 546 (604)
Q Consensus 544 ~~l 546 (604)
+++
T Consensus 295 ~~l 297 (297)
T 1okc_A 295 KFV 297 (297)
T ss_dssp ---
T ss_pred hhC
Confidence 764
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=6e-38 Score=324.47 Aligned_cols=216 Identities=18% Similarity=0.272 Sum_probs=184.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHchHHHHHHHHHcCCC--------CCCchhHHHHHHhhhcCccccccccccccccccccc
Q 007414 369 LAKQEHAFAGALAGVFVSLCLHPVDTVKTVIQSCHT--------EQKSIVYIGRSIVSERGLTGLYRGIASNIASSAPIS 440 (604)
Q Consensus 369 l~~~~~~laG~lAG~vs~~i~~PlDvIKtRlQ~~~~--------~~~g~~~~~k~I~k~eGl~gLYrGl~~~ll~~~~~~ 440 (604)
++.+..+++|++||+++.++++|+|+||+|||++.. .|+++++++++|+++||++|||||+.+++++.+|+.
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~ 84 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQ 84 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHH
Confidence 467789999999999999999999999999999742 588999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhhhhcCCCCcc----ccchhhhhhhHHHHHHHHHhhccHHHHHHhhhCCC-------CCcCHHHHHHHHH
Q 007414 441 AVYAFTYESVKGALLPHLPKE----FHSLAHCTAGGCASVATSFIFTPSERIKQQMQVGS-------RYHNCWNALVGII 509 (604)
Q Consensus 441 ai~f~~Ye~lK~~l~~~~~~~----~~~~~~~~aG~lAg~va~~it~PlDvVKtRmQ~~~-------~y~s~~~~~~~I~ 509 (604)
+++|.+||.+|+.+....... ...+..+++|++||++++++++|+|+||+|||++. .|.++++++++|+
T Consensus 85 ~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~ 164 (297)
T 1okc_A 85 ALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIF 164 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHH
Confidence 999999999999543322211 12356889999999999999999999999999863 5889999999999
Q ss_pred HhhcccccccCHHHHHhhHHhhHhHHHHHHHHHHHHHccCCCCCCCcchHHH-HHHHHHHHHHHhccchhHHHHHhhccc
Q 007414 510 KNGGLHSLYAGWGAVLCRNVPHSIVKFYTYESLKQMMLPSLKPGAQPNTIET-VCPSSQCVIILLKPAVPLASANINLFQ 588 (604)
Q Consensus 510 r~eGl~gLyrG~~p~llr~~p~~~i~f~~YE~lk~~l~~~~~~~~~~~~~~~-~~gglagai~~s~p~dpi~tvktr~~~ 588 (604)
++||++|||||+.|+++|.+|.++++|.+||.+|+.+.+.. ....+.. ++|++++++ .+..+.|+|++|+|+|.
T Consensus 165 ~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~----~~~~~~~~~~g~~ag~~-a~~~t~P~dvvktr~q~ 239 (297)
T 1okc_A 165 KSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPK----NVHIIVSWMIAQTVTAV-AGLVSYPFDTVRRRMMM 239 (297)
T ss_dssp HHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGG----CSCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHT
T ss_pred HhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCC----CccHHHHHHHHHHHHHH-HHHhcChHHHHHHHHhh
Confidence 99999999999999999999999999999999999875432 2233444 566666655 36677888888888875
Q ss_pred h
Q 007414 589 H 589 (604)
Q Consensus 589 ~ 589 (604)
+
T Consensus 240 ~ 240 (297)
T 1okc_A 240 Q 240 (297)
T ss_dssp T
T ss_pred c
Confidence 4
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=9.6e-38 Score=324.22 Aligned_cols=213 Identities=17% Similarity=0.226 Sum_probs=186.0
Q ss_pred HHHHHHHHHHHHHHHHchHHHHHHHHHcCCC-----------CCCchhHHHHHHhhhcCccccccccccccccccccchh
Q 007414 374 HAFAGALAGVFVSLCLHPVDTVKTVIQSCHT-----------EQKSIVYIGRSIVSERGLTGLYRGIASNIASSAPISAV 442 (604)
Q Consensus 374 ~~laG~lAG~vs~~i~~PlDvIKtRlQ~~~~-----------~~~g~~~~~k~I~k~eGl~gLYrGl~~~ll~~~~~~ai 442 (604)
++++|++||+++.++++|+|+||+|+|++.. .|+++++++++|+++||++|||||+.+++++.+|+.++
T Consensus 4 ~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i 83 (303)
T 2lck_A 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASV 83 (303)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHH
Confidence 6899999999999999999999999999753 58899999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcCCCCccccchhhhhhhHHHHHHHHHhhccHHHHHHhhhCCC------CCcCHHHHHHHHHHhhcccc
Q 007414 443 YAFTYESVKGALLPHLPKEFHSLAHCTAGGCASVATSFIFTPSERIKQQMQVGS------RYHNCWNALVGIIKNGGLHS 516 (604)
Q Consensus 443 ~f~~Ye~lK~~l~~~~~~~~~~~~~~~aG~lAg~va~~it~PlDvVKtRmQ~~~------~y~s~~~~~~~I~r~eGl~g 516 (604)
+|.+||.+|+.+.+... ..+.+..+++|++||++++++++|+|+||+|||++. .|.++++++++|+++||++|
T Consensus 84 ~f~~ye~~k~~~~~~~~-~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~g 162 (303)
T 2lck_A 84 RIGLYDSVKQFYTKGSE-HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRG 162 (303)
T ss_dssp TTTHHHHHHHHHSCCCS-SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHhcCCc-CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhh
Confidence 99999999999875422 355677899999999999999999999999999875 58999999999999999999
Q ss_pred cccCHHHHHhhHHhhHhHHHHHHHHHHHHHccCCCCCCCcchHHH-HHHHHHHHHHHhccchhHHHHHhhccchh
Q 007414 517 LYAGWGAVLCRNVPHSIVKFYTYESLKQMMLPSLKPGAQPNTIET-VCPSSQCVIILLKPAVPLASANINLFQHS 590 (604)
Q Consensus 517 LyrG~~p~llr~~p~~~i~f~~YE~lk~~l~~~~~~~~~~~~~~~-~~gglagai~~s~p~dpi~tvktr~~~~~ 590 (604)
||||+.|+++|.+|.++++|.+||.+|+.+.+... ........ ++|++++++ .+..+.|+|++|+|+|...
T Consensus 163 lyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~--~~~~~~~~~~~g~~ag~~-~~~~~~P~dvvktrlq~~~ 234 (303)
T 2lck_A 163 LWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANL--MTDDLPCHFTSAFGAGFC-TTVIASPVDVVKTRYMNSA 234 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTS--CCSCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTTCC
T ss_pred hhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccC--CCCchHHHHHHHHHHHHH-HHHHcCHHHHHHHHHHhcc
Confidence 99999999999999999999999999999876532 12233333 555555555 4777788999999988653
No 5
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=8.30 E-value=2e+02 Score=28.72 Aligned_cols=36 Identities=17% Similarity=0.094 Sum_probs=26.8
Q ss_pred HHHHHhhccHHHHHHhhhCCCCCcCHHHHHHHHHHhhcc
Q 007414 476 VATSFIFTPSERIKQQMQVGSRYHNCWNALVGIIKNGGL 514 (604)
Q Consensus 476 ~va~~it~PlDvVKtRmQ~~~~y~s~~~~~~~I~r~eGl 514 (604)
.++++--||||.+|-.++.. -++...+++.+.++|+
T Consensus 273 qLaTFdnypfdllRfqL~Sl---istp~~I~e~i~K~GL 308 (368)
T 3vjj_A 273 QLATFDNYPFDLLRFQLSSL---ISTPALIREKIAKEGL 308 (368)
T ss_dssp HHHHCTTCBHHHHHHHCSSC---CCCCHHHHHHHHHSCS
T ss_pred eeecCCCCCHHHHHHHhhhh---ccChHHHHHHHHhcCc
Confidence 45667789999999888764 3455678888888864
No 6
>1tlq_A Hypothetical protein YPJQ; structural genomics, NYSGXRC, T1519 protein structure initiative, NEW YORK SGX research center structural genomics; 2.40A {Bacillus subtilis} SCOP: a.195.1.1
Probab=8.15 E-value=2.9e+02 Score=25.87 Aligned_cols=44 Identities=9% Similarity=-0.034 Sum_probs=29.0
Q ss_pred chhhhhhhhhhc-cCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHc
Q 007414 346 KNVVEDENKMEF-HSPKTEKPHLSLAKQEHAFAGALAGVFVSLCLH 390 (604)
Q Consensus 346 ~F~~yd~~k~~l-~~~~~~~~~~~l~~~~~~laG~lAG~vs~~i~~ 390 (604)
+|+.+|..|.=+ ......... -..++..+++|.+|++.+.+...
T Consensus 117 NfGylDk~KpGIi~~Ld~k~~~-v~tFLDDiVgaiaAaaaSRlah~ 161 (189)
T 1tlq_A 117 NFGYLDKEKIGIIKELDESPDG-IHTFLDDIVAALAAAAASRIAHT 161 (189)
T ss_dssp HHHHHHHSCCTHHHHTSSSCSC-CCTTHHHHHHHHHHHHHHHHHTH
T ss_pred ecccccccCcceeccccCCCCC-ccccHHHHHHHHHHHHHHHHHhh
Confidence 788888877322 222222222 34788999999999998887753
No 7
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=7.49 E-value=3e+02 Score=22.19 Aligned_cols=37 Identities=11% Similarity=0.158 Sum_probs=29.5
Q ss_pred cccccccCHHHHHhhHHhhHhHHHHHHHHHHHHHccC
Q 007414 513 GLHSLYAGWGAVLCRNVPHSIVKFYTYESLKQMMLPS 549 (604)
Q Consensus 513 Gl~gLyrG~~p~llr~~p~~~i~f~~YE~lk~~l~~~ 549 (604)
|+...+|-+...+++.+|-.++.+.+|++.++.....
T Consensus 33 ~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l 69 (81)
T 3tgu_G 33 ALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERL 69 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4555566667778889999999999999999887654
No 8
>3k7b_A Protein A33; C-type lectin-like domain, homodimer, poxvirus, EEV, EV, VIR protein; 2.10A {Vaccinia virus WR}
Probab=7.09 E-value=1.7e+02 Score=24.51 Aligned_cols=32 Identities=25% Similarity=0.473 Sum_probs=14.5
Q ss_pred CCcchhhhhhhcccccccCcccccCCC-Cceeeec
Q 007414 91 DSHSECKKEVLRNLDKEENAWVPLSTD-SKYFCVD 124 (604)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 124 (604)
++-|.-++.|+...++-+..-| |.- .|||||.
T Consensus 61 gTWg~~~~~~~~~~~~~~~~~~--~~e~rkyFCV~ 93 (96)
T 3k7b_A 61 DTWGSDGNPITKTTSDYQDSDV--SQEVRKYFCVK 93 (96)
T ss_dssp TSBCTTSSBBCSSCCC---CCC--TTCCEEEEEEE
T ss_pred ccccccCCccccCCCCeeeccc--chhhheeEEEE
Confidence 3334445555554432222111 333 5799995
No 9
>1b5e_A Protein (deoxycytidylate hydroxymethylase); DNTP synthesizing complex, transferase; HET: DCM; 1.60A {Enterobacteria phage T4} SCOP: d.117.1.1 PDB: 1b49_A* 1b5d_A*
Probab=6.63 E-value=3e+02 Score=26.83 Aligned_cols=37 Identities=8% Similarity=0.152 Sum_probs=22.2
Q ss_pred hhhHHHHHHHhcCCCC------Ccccc-ccCcccCCccccccccccccc
Q 007414 158 FAHSTFWTFLRSGASL------SNDTC-VWGLASAGIPYQLGNVHRWMT 199 (604)
Q Consensus 158 ~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~wm~ 199 (604)
.+++|+| ||+++++. ...-| ++.- .+ =+++.+|+|=.
T Consensus 57 ~i~EllW-fl~G~tn~~~l~~~~~~iwd~~~~-~~---g~lg~~YGwR~ 100 (246)
T 1b5e_A 57 IQRELEW-YKSKSLFVKDIPGETPKIWQQVAS-SK---GEINSNYGWAI 100 (246)
T ss_dssp HHHHHHH-HHHTCSBGGGSSSSCCHHHHHHSC-TT---SBCSCCHHHHH
T ss_pred HHHHHHH-HhhCCCcHHHHHhhcchhhhhhcc-cC---CCCCCCCCeeE
Confidence 6889999 98887732 12355 4321 12 24677888644
No 10
>1y9i_A Low temperature requirement C protein; structural genomics, protein structure initiative, PSI; 1.80A {Listeria monocytogenes} SCOP: a.195.1.1
Probab=5.75 E-value=2.9e+02 Score=25.74 Aligned_cols=42 Identities=19% Similarity=0.123 Sum_probs=26.1
Q ss_pred cchhHHHHHHHHhhhhcCCCCc-----cccchhhhhhhHHHHHHHHH
Q 007414 439 ISAVYAFTYESVKGALLPHLPK-----EFHSLAHCTAGGCASVATSF 480 (604)
Q Consensus 439 ~~ai~f~~Ye~lK~~l~~~~~~-----~~~~~~~~~aG~lAg~va~~ 480 (604)
...+.|..||..|.......+. -...+..++||..|++++.+
T Consensus 112 ~gf~~Fr~fDi~KPgpI~~ld~~~~gg~gimlDDivAgi~A~~~~~l 158 (178)
T 1y9i_A 112 IGFTNYGYIDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAASRL 158 (178)
T ss_dssp GGHHHHHHHHHHCCTHHHHTTCCCSSCCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccchhHHhhhcccCCCCcchHHHHHHHHHHHHHHHH
Confidence 4567788899999765432221 12345677788777776543
Done!