Query 007415
Match_columns 604
No_of_seqs 329 out of 1494
Neff 7.1
Searched_HMMs 46136
Date Thu Mar 28 23:17:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007415.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007415hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2476 Uncharacterized conser 100.0 2E-124 4E-129 967.5 45.0 516 1-604 1-528 (528)
2 KOG2477 Uncharacterized conser 100.0 1.5E-47 3.2E-52 398.6 15.1 217 387-604 405-625 (628)
3 cd00844 MPP_Dbr1_N Dbr1 RNA la 100.0 4.9E-44 1.1E-48 363.6 23.9 219 6-235 1-257 (262)
4 cd07380 MPP_CWF19_N Schizosacc 100.0 3.3E-40 7.1E-45 308.1 14.4 145 7-233 1-150 (150)
5 KOG2863 RNA lariat debranching 100.0 1.2E-38 2.6E-43 321.4 12.7 216 4-235 1-254 (456)
6 PF04677 CwfJ_C_1: Protein sim 100.0 1.9E-35 4E-40 266.0 13.9 116 384-499 6-121 (121)
7 PF04676 CwfJ_C_2: Protein sim 99.9 4.1E-28 8.8E-33 211.1 9.2 96 508-603 1-98 (98)
8 COG2129 Predicted phosphoester 99.9 1.4E-21 3E-26 190.0 21.0 199 1-234 1-205 (226)
9 cd07388 MPP_Tt1561 Thermus the 99.9 2.4E-21 5.2E-26 192.9 20.4 195 3-235 4-208 (224)
10 cd07392 MPP_PAE1087 Pyrobaculu 99.8 2.6E-19 5.7E-24 172.8 20.8 187 6-231 1-188 (188)
11 PRK10687 purine nucleoside pho 99.7 3E-17 6.4E-22 148.0 9.8 100 389-488 3-109 (119)
12 COG0537 Hit Diadenosine tetrap 99.7 2.8E-16 6E-21 145.4 10.2 99 390-488 2-106 (138)
13 PF14582 Metallophos_3: Metall 99.6 3.4E-14 7.3E-19 138.1 18.8 200 4-235 6-237 (255)
14 cd01275 FHIT FHIT (fragile his 99.6 4.1E-15 8.8E-20 135.7 10.9 99 391-489 1-106 (126)
15 cd01277 HINT_subgroup HINT (hi 99.6 7.7E-15 1.7E-19 128.6 10.9 97 390-486 1-103 (103)
16 cd01276 PKCI_related Protein K 99.5 3.8E-14 8.3E-19 124.6 10.2 96 390-485 1-103 (104)
17 PF01230 HIT: HIT domain; Int 99.5 3E-13 6.5E-18 117.8 9.8 86 402-487 5-96 (98)
18 cd07397 MPP_DevT Myxococcus xa 99.4 1E-11 2.2E-16 124.5 18.8 202 4-233 1-234 (238)
19 cd01278 aprataxin_related apra 99.4 1.3E-12 2.8E-17 114.9 10.5 95 390-484 1-103 (104)
20 KOG3275 Zinc-binding protein o 99.4 1.1E-12 2.4E-17 113.6 8.9 98 388-485 15-118 (127)
21 cd07379 MPP_239FB Homo sapiens 99.4 1.1E-11 2.5E-16 114.1 13.8 133 5-231 1-135 (135)
22 cd00468 HIT_like HIT family: H 99.3 3.6E-12 7.8E-17 107.7 8.6 80 406-485 1-86 (86)
23 TIGR03729 acc_ester putative p 99.3 9.7E-11 2.1E-15 118.5 15.0 200 5-231 1-236 (239)
24 cd07402 MPP_GpdQ Enterobacter 99.2 7.7E-10 1.7E-14 111.4 18.5 197 5-235 1-212 (240)
25 PF00149 Metallophos: Calcineu 99.2 1.2E-10 2.6E-15 107.4 9.8 193 4-210 1-200 (200)
26 TIGR00209 galT_1 galactose-1-p 99.1 2E-10 4.3E-15 121.9 8.7 98 389-486 194-302 (347)
27 PRK11720 galactose-1-phosphate 99.1 2.4E-10 5.3E-15 121.2 9.0 98 389-486 194-302 (346)
28 cd07393 MPP_DR1119 Deinococcus 99.0 7.9E-09 1.7E-13 104.2 16.7 178 6-218 1-213 (232)
29 TIGR00040 yfcE phosphoesterase 99.0 9.6E-09 2.1E-13 97.1 14.7 63 4-76 1-63 (158)
30 PF12850 Metallophos_2: Calcin 99.0 3.8E-09 8.2E-14 98.6 11.5 141 4-237 1-141 (156)
31 KOG3379 Diadenosine polyphosph 99.0 3.6E-09 7.9E-14 94.5 10.3 87 400-486 14-106 (150)
32 cd07403 MPP_TTHA0053 Thermus t 99.0 4.3E-09 9.4E-14 96.4 11.1 68 155-233 57-124 (129)
33 cd07404 MPP_MS158 Microscilla 99.0 3.7E-09 8E-14 100.7 10.7 150 6-211 1-150 (166)
34 PLN02643 ADP-glucose phosphory 98.9 3.8E-09 8.3E-14 111.8 9.6 95 389-486 198-302 (336)
35 cd00608 GalT Galactose-1-phosp 98.9 3E-09 6.6E-14 112.7 8.3 100 389-488 184-296 (329)
36 PRK11148 cyclic 3',5'-adenosin 98.9 1.1E-07 2.4E-12 98.2 19.3 179 2-210 13-207 (275)
37 cd00841 MPP_YfcE Escherichia c 98.8 6.5E-08 1.4E-12 90.9 14.6 133 5-236 1-133 (155)
38 cd00838 MPP_superfamily metall 98.8 3.8E-08 8.1E-13 87.7 11.7 131 7-231 1-131 (131)
39 PF11969 DcpS_C: Scavenger mRN 98.8 4.9E-09 1.1E-13 94.3 5.3 99 390-489 1-107 (116)
40 PRK09453 phosphodiesterase; Pr 98.8 1.7E-07 3.6E-12 90.9 14.5 68 4-76 1-75 (182)
41 cd07385 MPP_YkuE_C Bacillus su 98.7 2.2E-07 4.7E-12 92.4 15.4 162 3-215 1-171 (223)
42 cd07396 MPP_Nbla03831 Homo sap 98.7 5.4E-07 1.2E-11 92.7 17.6 195 5-235 2-246 (267)
43 cd07400 MPP_YydB Bacillus subt 98.6 8.7E-07 1.9E-11 82.1 13.8 116 6-211 1-126 (144)
44 PRK05340 UDP-2,3-diacylglucosa 98.6 1E-06 2.2E-11 89.3 14.5 201 4-235 1-221 (241)
45 cd07394 MPP_Vps29 Homo sapiens 98.5 3E-06 6.5E-11 82.0 15.5 134 5-235 1-136 (178)
46 COG0622 Predicted phosphoester 98.5 3.3E-06 7.2E-11 81.0 15.6 141 3-237 1-141 (172)
47 cd00839 MPP_PAPs purple acid p 98.5 1.2E-06 2.6E-11 91.1 13.0 215 3-235 4-239 (294)
48 cd07395 MPP_CSTP1 Homo sapiens 98.5 8.6E-06 1.9E-10 83.4 18.5 185 3-210 4-218 (262)
49 KOG3947 Phosphoesterases [Gene 98.4 1.8E-06 3.8E-11 86.6 12.0 203 4-233 62-281 (305)
50 cd07378 MPP_ACP5 Homo sapiens 98.4 6.3E-06 1.4E-10 84.9 15.6 206 4-235 1-233 (277)
51 TIGR01854 lipid_A_lpxH UDP-2,3 98.4 1.2E-05 2.5E-10 81.1 15.9 103 6-127 1-115 (231)
52 cd00840 MPP_Mre11_N Mre11 nucl 98.4 1.5E-06 3.4E-11 86.0 9.4 175 5-211 1-202 (223)
53 PHA03008 hypothetical protein; 98.3 1.7E-06 3.7E-11 82.2 8.4 90 102-210 99-204 (234)
54 TIGR00583 mre11 DNA repair pro 98.3 3.1E-06 6.6E-11 91.9 10.8 75 3-78 3-124 (405)
55 cd08163 MPP_Cdc1 Saccharomyces 98.3 3.2E-05 7E-10 79.2 17.7 161 32-212 45-230 (257)
56 PRK11340 phosphodiesterase Yae 98.3 1.7E-05 3.8E-10 81.8 15.7 71 3-76 49-124 (271)
57 PHA02239 putative protein phos 98.2 2.8E-06 6E-11 85.9 7.6 78 4-84 1-78 (235)
58 PHA02546 47 endonuclease subun 98.2 2.7E-05 5.8E-10 83.1 14.5 139 4-162 1-155 (340)
59 PRK00166 apaH diadenosine tetr 98.1 5E-06 1.1E-10 85.9 7.1 68 4-76 1-68 (275)
60 KOG4359 Protein kinase C inhib 98.1 5.2E-06 1.1E-10 74.6 6.1 102 388-491 30-141 (166)
61 PLN02533 probable purple acid 98.1 0.00011 2.4E-09 80.7 18.0 208 3-236 139-361 (427)
62 cd07383 MPP_Dcr2 Saccharomyces 98.1 2.9E-05 6.3E-10 76.2 12.2 72 3-75 2-87 (199)
63 cd07399 MPP_YvnB Bacillus subt 98.1 3.3E-05 7.2E-10 76.9 12.3 149 5-210 2-161 (214)
64 cd07401 MPP_TMEM62_N Homo sapi 98.1 0.0002 4.4E-09 73.3 18.3 189 6-219 2-219 (256)
65 PRK04036 DNA polymerase II sma 98.0 6.8E-05 1.5E-09 84.0 14.5 117 3-127 243-388 (504)
66 TIGR00619 sbcd exonuclease Sbc 97.9 2.6E-05 5.7E-10 79.7 7.9 74 4-78 1-89 (253)
67 cd07410 MPP_CpdB_N Escherichia 97.9 0.0011 2.4E-08 68.6 19.8 205 4-248 1-257 (277)
68 cd07424 MPP_PrpA_PrpB PrpA and 97.9 3.1E-05 6.7E-10 76.6 7.2 66 4-76 1-66 (207)
69 cd07423 MPP_PrpE Bacillus subt 97.9 2.5E-05 5.4E-10 78.9 6.4 77 4-84 1-85 (234)
70 PRK10966 exonuclease subunit S 97.7 8.4E-05 1.8E-09 81.1 8.5 75 4-79 1-89 (407)
71 PRK11439 pphA serine/threonine 97.7 4.8E-05 1E-09 76.0 6.1 72 4-84 17-88 (218)
72 TIGR00668 apaH bis(5'-nucleosy 97.7 6.5E-05 1.4E-09 77.3 6.5 68 4-76 1-68 (279)
73 COG0420 SbcD DNA repair exonuc 97.7 0.00011 2.4E-09 79.8 8.4 74 4-78 1-89 (390)
74 PRK13625 bis(5'-nucleosyl)-tet 97.6 9.7E-05 2.1E-09 75.2 6.2 77 4-84 1-84 (245)
75 cd07421 MPP_Rhilphs Rhilph pho 97.6 0.0002 4.3E-09 74.1 8.0 71 5-76 3-79 (304)
76 cd07422 MPP_ApaH Escherichia c 97.6 0.00013 2.9E-09 74.6 6.5 66 6-76 1-66 (257)
77 PRK09968 serine/threonine-spec 97.5 0.00016 3.4E-09 72.4 6.4 71 5-84 16-86 (218)
78 cd07412 MPP_YhcR_N Bacillus su 97.5 0.0047 1E-07 64.4 17.4 219 4-249 1-271 (288)
79 COG1409 Icc Predicted phosphoh 97.5 0.0027 5.8E-08 65.2 15.0 73 4-79 1-80 (301)
80 cd07413 MPP_PA3087 Pseudomonas 97.5 0.00022 4.8E-09 71.5 6.7 68 7-76 2-75 (222)
81 cd00144 MPP_PPP_family phospho 97.5 0.00022 4.7E-09 71.0 6.5 67 7-76 1-67 (225)
82 cd07425 MPP_Shelphs Shewanella 97.5 0.00023 5E-09 70.6 6.5 69 7-76 1-79 (208)
83 cd00845 MPP_UshA_N_like Escher 97.4 0.0035 7.6E-08 63.6 14.0 112 4-128 1-137 (252)
84 cd08166 MPP_Cdc1_like_1 unchar 97.3 0.0026 5.7E-08 62.2 11.6 35 157-209 112-146 (195)
85 cd07386 MPP_DNA_pol_II_small_a 97.3 0.0014 2.9E-08 66.6 9.8 108 7-127 2-139 (243)
86 cd07411 MPP_SoxB_N Thermus the 97.3 0.022 4.7E-07 58.6 18.7 199 4-249 1-249 (264)
87 cd07408 MPP_SA0022_N Staphyloc 97.2 0.0051 1.1E-07 63.0 13.3 110 4-127 1-135 (257)
88 cd07406 MPP_CG11883_N Drosophi 97.1 0.041 8.8E-07 56.4 18.9 112 4-128 1-138 (257)
89 PRK09419 bifunctional 2',3'-cy 97.1 0.015 3.4E-07 71.8 17.9 204 3-235 660-900 (1163)
90 cd07409 MPP_CD73_N CD73 ecto-5 97.1 0.039 8.4E-07 57.3 18.2 111 4-127 1-149 (281)
91 TIGR01530 nadN NAD pyrophospha 97.0 0.0093 2E-07 67.8 14.3 110 4-126 1-147 (550)
92 cd07405 MPP_UshA_N Escherichia 96.9 0.056 1.2E-06 56.3 18.2 114 4-128 1-139 (285)
93 PTZ00422 glideosome-associated 96.9 0.049 1.1E-06 58.9 17.8 213 3-233 26-276 (394)
94 COG1768 Predicted phosphohydro 96.8 0.028 6.1E-07 53.6 13.3 147 28-209 39-198 (230)
95 smart00156 PP2Ac Protein phosp 96.8 0.0031 6.7E-08 65.2 7.0 204 4-234 28-245 (271)
96 cd07420 MPP_RdgC Drosophila me 96.7 0.0029 6.2E-08 66.8 6.4 73 4-77 51-123 (321)
97 TIGR00024 SbcD_rel_arch putati 96.6 0.0035 7.6E-08 63.0 6.2 68 5-76 16-101 (225)
98 cd07407 MPP_YHR202W_N Saccharo 96.5 0.029 6.4E-07 58.3 12.4 119 2-128 4-157 (282)
99 cd07416 MPP_PP2B PP2B, metallo 96.5 0.0057 1.2E-07 64.3 7.0 72 4-77 43-114 (305)
100 COG1085 GalT Galactose-1-phosp 96.5 0.0067 1.5E-07 63.8 7.2 96 389-485 185-291 (338)
101 cd07414 MPP_PP1_PPKL PP1, PPKL 96.4 0.0059 1.3E-07 63.8 6.4 203 4-234 50-267 (293)
102 PRK09558 ushA bifunctional UDP 96.4 0.084 1.8E-06 60.2 16.1 114 3-127 34-173 (551)
103 cd07390 MPP_AQ1575 Aquifex aeo 96.4 0.009 2E-07 57.1 6.9 65 7-76 2-81 (168)
104 cd07415 MPP_PP2A_PP4_PP6 PP2A, 96.4 0.0064 1.4E-07 63.3 6.3 205 4-234 42-259 (285)
105 PTZ00239 serine/threonine prot 96.3 0.0073 1.6E-07 63.4 6.5 206 5-233 44-260 (303)
106 cd07417 MPP_PP5_C PP5, C-termi 96.2 0.0082 1.8E-07 63.4 6.4 211 4-234 60-278 (316)
107 PTZ00244 serine/threonine-prot 96.2 0.007 1.5E-07 63.2 5.7 205 5-234 53-269 (294)
108 PTZ00480 serine/threonine-prot 96.2 0.0096 2.1E-07 62.8 6.6 208 4-235 59-277 (320)
109 cd00842 MPP_ASMase acid sphing 96.1 0.14 3E-06 53.4 15.1 169 21-210 57-261 (296)
110 cd07418 MPP_PP7 PP7, metalloph 96.1 0.011 2.4E-07 63.5 6.7 73 4-77 66-138 (377)
111 COG0737 UshA 5'-nucleotidase/2 96.1 0.093 2E-06 59.3 14.2 213 3-249 26-279 (517)
112 PF02744 GalP_UDP_tr_C: Galact 96.0 0.0085 1.8E-07 57.4 4.8 72 389-460 13-86 (166)
113 TIGR03767 P_acnes_RR metalloph 95.9 0.52 1.1E-05 52.2 18.1 131 115-251 299-448 (496)
114 cd07391 MPP_PF1019 Pyrococcus 95.8 0.019 4.1E-07 55.0 6.3 58 18-76 28-87 (172)
115 KOG3325 Membrane coat complex 95.8 0.082 1.8E-06 48.9 9.9 111 4-160 1-113 (183)
116 cd07419 MPP_Bsu1_C Arabidopsis 95.8 0.021 4.7E-07 60.2 7.1 72 5-76 49-126 (311)
117 TIGR00282 metallophosphoestera 95.7 0.06 1.3E-06 55.5 9.6 70 4-78 1-72 (266)
118 cd08162 MPP_PhoA_N Synechococc 95.6 0.23 4.9E-06 52.5 14.1 120 4-128 1-166 (313)
119 cd07382 MPP_DR1281 Deinococcus 95.5 0.26 5.7E-06 50.5 13.6 109 5-126 1-115 (255)
120 KOG2679 Purple (tartrate-resis 95.5 0.048 1E-06 55.3 7.7 208 3-232 43-272 (336)
121 cd07398 MPP_YbbF-LpxH Escheric 95.5 0.06 1.3E-06 53.0 8.6 42 185-233 176-217 (217)
122 cd07384 MPP_Cdc1_like Saccharo 95.3 0.022 4.7E-07 54.7 4.6 57 19-76 33-99 (171)
123 cd08165 MPP_MPPE1 human MPPE1 94.9 0.04 8.6E-07 52.1 5.0 45 32-76 38-88 (156)
124 KOG2310 DNA repair exonuclease 94.8 0.064 1.4E-06 59.0 7.0 75 3-79 13-135 (646)
125 KOG0371 Serine/threonine prote 94.6 0.065 1.4E-06 53.9 5.7 69 6-76 62-130 (319)
126 COG2908 Uncharacterized protei 94.4 0.16 3.4E-06 51.0 8.0 79 33-126 30-114 (237)
127 KOG1378 Purple acid phosphatas 93.2 1.4 3.1E-05 48.3 13.3 186 3-213 147-346 (452)
128 PRK09419 bifunctional 2',3'-cy 93.2 3.8 8.2E-05 51.1 18.8 205 4-235 42-312 (1163)
129 KOG0373 Serine/threonine speci 92.8 0.23 5.1E-06 48.9 6.0 68 5-76 47-116 (306)
130 cd07387 MPP_PolD2_C PolD2 (DNA 92.7 1.2 2.6E-05 45.7 11.4 183 33-248 43-248 (257)
131 COG1408 Predicted phosphohydro 92.7 0.27 5.9E-06 51.2 6.8 71 4-77 45-118 (284)
132 cd00608 GalT Galactose-1-phosp 92.2 1.1 2.3E-05 47.8 10.8 62 426-487 96-163 (329)
133 COG4186 Predicted phosphoester 92.2 0.58 1.3E-05 43.9 7.5 70 1-76 1-85 (186)
134 KOG0372 Serine/threonine speci 92.0 0.33 7.1E-06 48.7 5.9 67 6-76 45-113 (303)
135 cd08164 MPP_Ted1 Saccharomyces 91.6 0.26 5.7E-06 48.3 4.8 46 31-76 43-110 (193)
136 COG1407 Predicted ICC-like pho 91.5 0.51 1.1E-05 47.5 6.8 67 4-76 20-109 (235)
137 TIGR03768 RPA4764 metallophosp 91.3 0.41 8.9E-06 52.6 6.4 60 16-76 84-169 (492)
138 COG4360 APA2 ATP adenylyltrans 90.8 0.37 8E-06 48.0 4.9 75 406-488 87-165 (298)
139 KOG0374 Serine/threonine speci 89.5 0.38 8.3E-06 51.1 4.2 206 5-235 60-279 (331)
140 KOG3662 Cell division control 88.9 0.86 1.9E-05 49.4 6.3 74 3-76 48-143 (410)
141 TIGR01390 CycNucDiestase 2',3' 88.9 2.9 6.3E-05 48.5 11.2 113 3-127 2-160 (626)
142 PRK09418 bifunctional 2',3'-cy 88.2 3.2 7E-05 49.2 11.0 42 3-45 39-96 (780)
143 KOG2958 Galactose-1-phosphate 88.1 0.98 2.1E-05 46.3 5.8 61 400-460 212-272 (354)
144 PRK09420 cpdB bifunctional 2', 87.9 2.1 4.6E-05 49.8 9.2 110 3-126 25-182 (649)
145 PRK11907 bifunctional 2',3'-cy 87.6 2.1 4.5E-05 50.9 9.0 112 3-126 115-273 (814)
146 PLN03103 GDP-L-galactose-hexos 87.2 1.1 2.3E-05 48.7 5.8 69 410-487 169-243 (403)
147 cd07381 MPP_CapA CapA and rela 86.2 39 0.00085 33.8 17.9 105 14-129 22-142 (239)
148 KOG1432 Predicted DNA repair e 85.2 2 4.4E-05 45.3 6.4 75 3-78 53-148 (379)
149 KOG1595 CCCH-type Zn-finger pr 84.7 1.9 4.1E-05 47.9 6.2 102 231-370 187-292 (528)
150 smart00854 PGA_cap Bacterial c 84.1 49 0.0011 33.2 18.6 106 5-128 1-137 (239)
151 PLN02643 ADP-glucose phosphory 83.9 9.2 0.0002 40.9 11.0 75 426-500 110-196 (336)
152 COG1085 GalT Galactose-1-phosp 83.3 6.2 0.00014 41.9 9.1 65 424-488 93-165 (338)
153 PF04042 DNA_pol_E_B: DNA poly 80.7 4 8.6E-05 40.0 6.4 114 6-126 1-137 (209)
154 COG1692 Calcineurin-like phosp 80.6 11 0.00025 38.1 9.3 102 4-124 1-114 (266)
155 TIGR00209 galT_1 galactose-1-p 76.3 17 0.00038 39.0 10.0 94 389-487 50-173 (347)
156 PRK11720 galactose-1-phosphate 76.3 17 0.00036 39.1 9.8 61 426-487 108-173 (346)
157 KOG0562 Predicted hydrolase (H 76.2 2.5 5.3E-05 40.0 3.1 75 410-485 23-104 (184)
158 COG1311 HYS2 Archaeal DNA poly 74.6 20 0.00043 39.8 9.9 207 4-250 226-463 (481)
159 PF09587 PGA_cap: Bacterial ca 73.8 1.1E+02 0.0023 31.0 17.0 105 5-129 1-140 (250)
160 KOG2720 Predicted hydrolase (H 72.6 2.6 5.7E-05 44.3 2.5 71 413-489 169-242 (431)
161 KOG0375 Serine-threonine phosp 70.9 5.5 0.00012 42.2 4.4 65 5-76 89-158 (517)
162 PF05011 DBR1: Lariat debranch 69.8 4.4 9.5E-05 37.9 3.2 30 221-252 6-35 (145)
163 KOG0377 Protein serine/threoni 65.4 1.3 2.9E-05 47.8 -1.4 69 5-77 166-237 (631)
164 PF00642 zf-CCCH: Zinc finger 61.1 2.7 5.9E-05 27.4 -0.0 23 315-337 5-27 (27)
165 PF13483 Lactamase_B_3: Beta-l 59.1 33 0.00071 32.0 7.0 62 114-206 102-163 (163)
166 PF10686 DUF2493: Protein of u 54.1 33 0.00073 27.9 5.3 38 3-42 3-41 (71)
167 PRK05471 CDP-diacylglycerol py 51.9 49 0.0011 33.8 7.1 91 419-513 69-169 (252)
168 TIGR00672 cdh CDP-diacylglycer 50.8 50 0.0011 33.7 7.0 90 420-513 69-168 (250)
169 smart00356 ZnF_C3H1 zinc finge 49.4 12 0.00026 23.7 1.6 21 315-336 6-26 (27)
170 PF13277 YmdB: YmdB-like prote 47.5 40 0.00088 34.4 5.8 70 7-85 1-77 (253)
171 KOG3770 Acid sphingomyelinase 38.4 93 0.002 35.5 7.3 62 16-78 194-264 (577)
172 PF02611 CDH: CDP-diacylglycer 36.9 61 0.0013 32.6 5.1 92 419-514 40-141 (222)
173 PTZ00235 DNA polymerase epsilo 32.7 1.5E+02 0.0032 31.1 7.2 42 4-45 28-76 (291)
174 KOG3969 Uncharacterized conser 31.8 81 0.0018 32.6 5.0 88 400-489 157-259 (310)
175 PF12239 DUF3605: Protein of u 30.9 1.3E+02 0.0027 28.7 6.0 65 416-481 78-155 (158)
176 KOG3818 DNA polymerase epsilon 30.1 1.9E+02 0.0042 32.0 7.7 42 4-45 283-326 (525)
177 KOG4138 Unchracterized conserv 29.9 17 0.00037 30.7 -0.0 21 572-599 56-76 (96)
178 cd07386 MPP_DNA_pol_II_small_a 25.1 91 0.002 31.3 4.3 34 196-236 189-222 (243)
179 COG1911 RPL30 Ribosomal protei 23.6 1.1E+02 0.0024 26.6 3.7 41 29-75 32-72 (100)
180 PF01076 Mob_Pre: Plasmid reco 23.4 2.6E+02 0.0057 27.2 7.0 53 446-498 98-153 (196)
181 TIGR00854 pts-sorbose PTS syst 21.8 4.4E+02 0.0096 24.7 7.8 22 136-159 120-141 (151)
182 cd07398 MPP_YbbF-LpxH Escheric 21.8 1.4E+02 0.0031 28.9 4.8 79 32-127 30-117 (217)
183 PRK11425 PTS system N-acetylga 21.7 3.9E+02 0.0084 25.2 7.5 22 136-159 121-142 (157)
184 KOG0780 Signal recognition par 20.9 1.4E+02 0.003 32.7 4.6 69 6-81 104-172 (483)
185 KOG3243 6,7-dimethyl-8-ribityl 20.3 1.7E+02 0.0037 26.9 4.4 54 29-82 73-131 (158)
No 1
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.9e-124 Score=967.50 Aligned_cols=516 Identities=44% Similarity=0.780 Sum_probs=442.8
Q ss_pred CCC--CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChH
Q 007415 1 MSP--PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAA 78 (604)
Q Consensus 1 m~~--~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~ 78 (604)
|+. .|||||||+.|+|+.+|++|+++++|+||||++||+|+||+. +..+.+|.+|.+|..++|+||||.++|...+.
T Consensus 1 Ma~~~~kILv~Gd~~Gr~~eli~rI~~v~Kk~GpFd~liCvGnfF~~-~~~~~e~~~ykng~~~vPiptY~~g~~~~~~~ 79 (528)
T KOG2476|consen 1 MAQADAKILVCGDVEGRFDELIKRIQKVNKKSGPFDLLICVGNFFGH-DTQNAEVEKYKNGTKKVPIPTYFLGDNANETE 79 (528)
T ss_pred CCCCCceEEEEcCccccHHHHHHHHHHHhhcCCCceEEEEecccCCC-ccchhHHHHHhcCCccCceeEEEecCCCCccc
Confidence 775 499999999999999999999999999999999999999996 34467899999999999999999999986555
Q ss_pred HHHHHHhccccccCcccCCceecCCEEEcCCCCeEEE-cCcEEEEEecccCCCCCCCCCCCHHHHHHHHH---hhcCCCC
Q 007415 79 KVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTL-HGLSVAYLSGRQSSEGQQFGTYSQDDVDALRA---LAEEPGI 154 (604)
Q Consensus 79 ~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~-~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~---l~~~~~~ 154 (604)
.++.. .+|.|||+||+|||++|++++ +|++||||||.++..... ..|+..|+++|+. ..+...+
T Consensus 80 ky~~n-----------~~g~Ei~~Nlt~Lg~~G~~~l~sGl~IaYLsG~e~~~~~~-~~fs~~dv~~l~~~~~~~~~~~g 147 (528)
T KOG2476|consen 80 KYFEN-----------SDGKEIAENLTYLGRKGTYKLASGLTIAYLSGPESSEKGE-SKFSQADVDELRHRLDTQKEFKG 147 (528)
T ss_pred eeccc-----------CCCcccccceeeecccceEeecCCcEEEEeeccccccccc-cccCHHHHHHHhcccccccccCC
Confidence 55442 358899999999999999986 599999999998865542 3789999999883 3345789
Q ss_pred ccEEEeCCCCcccccc-ccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcccccccccC-----CCcceeEEE
Q 007415 155 VDLFLTNEWPSGVTNK-AAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNV-----DAVHVTRFL 228 (604)
Q Consensus 155 vDILLTh~wP~gi~~~-~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fyEr~Py~~~-----~~~~~TRFI 228 (604)
||||||++||.+|+.. +.. .+. ....||..|++|+.++||||||+|..++||||+||+|+ ...++||||
T Consensus 148 vDILlTseWP~~v~e~~ss~--~~~---~~~~gs~lvs~La~~lkPRYHFa~~~~v~YErePyrn~~~~~~~~~h~TRFI 222 (528)
T KOG2476|consen 148 VDILLTSEWPADVQERNSSL--PES---KRLCGSELVSELAAELKPRYHFAGSDGVFYEREPYRNHAALNEEAGHVTRFI 222 (528)
T ss_pred ccEEEecCCcchhhhccccC--ccc---cCCcchHHHHHHHHhcCcceEeccCCCceeecccccchhhhcccccceeeee
Confidence 9999999999999874 221 111 24689999999999999999999999999999999995 378999999
Q ss_pred EcCCCCCcccceeEEEeccCCCCCCchhcccCCCCCCcCCCCccccCCCCcccccCCCCCCCCCCcccccccccccccCC
Q 007415 229 GLAPVGNKEKQKFIHALSPTPAATMSAADISMKTPNTTLSPYTFLDQGSHSKEAAKRPSDSVSDSQYWRYDVSQKRQKHG 308 (604)
Q Consensus 229 ~L~~~gn~~K~Kw~yAf~i~p~~~~~~~~l~~~p~~~t~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (604)
+||++||++|+||+|||++.|+.+|...+|++.|+|+|+|||.... ......+|..++ ++.+++||+++++.+
T Consensus 223 ~LA~vGN~ek~K~lYAfs~~P~~~~~~~el~a~Ppn~~~~Py~~~d---~~~qs~kr~~~s--~~~q~ffd~~~~~~~-- 295 (528)
T KOG2476|consen 223 ALAKVGNPEKQKWLYAFSLKPMGTMELAELTAKPPNLIPNPYNLED---VAIQSNKRPNSS--ESTQYFFDMDKQQLS-- 295 (528)
T ss_pred ehhhcCCccccceeeeecccccccchhhhcccCCCccCCCCcchhh---hhhhhccCCCCC--ccceeeeccCccccc--
Confidence 9999999999999999999999999999999999999999996211 111234555433 244455998633222
Q ss_pred CCCCCCcceeeeccCCCCCCCcccccCCchhhhhhccccchhhhhcccCCCCCCccccCCcCCCccccccCCcccccCCC
Q 007415 309 GGDGDKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCEKGPECSYKHSLQNDDSQRTHRSENASANRS 388 (604)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (604)
+.+||+.-.++. .+++|. +.+.+
T Consensus 296 ------------------------------------------------~~~gr~~h~~~~-----~kgpR~----p~~~p 318 (528)
T KOG2476|consen 296 ------------------------------------------------KMNGRESHSDKS-----EKGPRK----PKIPP 318 (528)
T ss_pred ------------------------------------------------cCCccccccccc-----ccCCCC----CCCCC
Confidence 112222221210 011111 23567
Q ss_pred CCCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCceEE
Q 007415 389 KECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVF 468 (604)
Q Consensus 389 ~~C~FC~~~~~~~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~~g~~~v~ 468 (604)
+.||||++||++++||||+||+++|++||||||+.||+|||||.|++++..+++++++||.+|+.+|++||+++|..+|+
T Consensus 319 g~CwFCLSnP~vEkHLIVsIG~~~YlAlaKGpLs~~HvlIipi~H~p~~~~ls~ev~~Ei~kykaal~~myk~~g~~~vv 398 (528)
T KOG2476|consen 319 GSCWFCLSNPNVEKHLIVSIGNHFYLALAKGPLSSDHVLIIPIEHIPSLVPLSAEVTQEINKYKAALRKMYKKQGKDAVV 398 (528)
T ss_pred CceEEEecCCChhhheEEEecceeEEeecCCCCCCCeEEEEEcccccccccCCHHHHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccCCCCeeEEEEEecCcchHHHHHHHHHHHHHHcCCceeeccCCCCcchhhhHhhhcCCCCCeEEEEecCCcEEEEE
Q 007415 469 FEWLSKRGTHANLQAVPIPTSKAAAVQDIFNLAAEKLGFKFLATKSSKSSDGRRSLRAQFDRNCSFFYVELPEGTVLSHL 548 (604)
Q Consensus 469 ~E~~~~~~~H~HihvvPvp~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~Yf~v~~~~~~~~~~~ 548 (604)
||+.+.++.|+|+|+||||+.....++..|..++++++++|++.+... .+.+..+.+.+||+||+|+|+.|+|+
T Consensus 399 fE~~~~rs~Hlq~Qvipvpks~s~~ik~~F~~~A~eag~ef~t~~~~~------s~~~~~n~~l~yF~vELPdg~~L~hr 472 (528)
T KOG2476|consen 399 FERQSYRSVHLQLQVIPVPKSSSRQIKSSFETAAEEAGLEFETYDSHS------SIKNQSNNGLPYFVVELPDGSILIHR 472 (528)
T ss_pred EEeecccceeeEEEEEeccchhhhhhhHHHHHHHHHcCceEEecCcch------hhhhhhccCCceEEEECCCCCeehhh
Confidence 996688999999999999999999999999999999999999877543 36666777889999999999999999
Q ss_pred eccCCccCCccHHHHHHHhcCCCccccccccCCChHHHHHHHHHHHhcCccCCCCC
Q 007415 549 IEENERFPAQFGREVLAGLLNIADKADWRNCMLGKEEETKMVEDFKKRFEAFDPNQ 604 (604)
Q Consensus 549 i~~~~~f~~qFgR~Vla~lL~lp~r~~Wr~c~~~~~ee~~~~~~F~~~f~~fD~~~ 604 (604)
+..+++||+||||||||+|||||+|+|||+|.+++|||++.+++||++|++||||+
T Consensus 473 ~~k~e~FplqFGReVlAslLn~pdrvdWr~C~~tkeeE~~~ae~Fkk~F~pyDft~ 528 (528)
T KOG2476|consen 473 LMKNETFPLQFGREVLASLLNLPDRVDWRTCLQTKEEEVALAEKFKKAFKPYDFTL 528 (528)
T ss_pred hhccCccchhhhHHHHHHHcCCcccccHHHhhhhhHHHHHHHHHHHHhccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999996
No 2
>KOG2477 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.5e-47 Score=398.63 Aligned_cols=217 Identities=24% Similarity=0.483 Sum_probs=197.4
Q ss_pred CCCCCcccCCCCCCCcceEEEECCEEEEEecCC-CCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCc
Q 007415 387 RSKECWFCLSSPSVESHLIVSVGEYYYCALPKG-PLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKE 465 (604)
Q Consensus 387 ~~~~C~FC~~~~~~~~~lIvs~g~~~yl~l~kg-pl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~~g~~ 465 (604)
..++|.||+.++..++|+|||+|..+||+||.. +|..|||+|||.+|.++..+||+++|+||++|+++|+.||++.+.+
T Consensus 405 ~lD~C~rCfds~klpkhlviSlg~~tYLsLp~~~gL~~gHciIvptqH~~~t~slDEdvWDEIrnfrKcL~~Mfas~n~d 484 (628)
T KOG2477|consen 405 VLDTCPRCFDSEKLPKHLVISLGHRTYLSLPTQPGLAKGHCIIVPTQHRINTLSLDEDVWDEIRNFRKCLALMFASMNLD 484 (628)
T ss_pred HhhhchhhhcccccccceeEEeccceeEeccccCccccCceEEecccccccccccchHHHHHHHHHHHHHHHHHHhcCCC
Confidence 468999999999999999999999999999975 6999999999999999999999999999999999999999999999
Q ss_pred eEEEeecc--CCCCeeEEEEEecCcchHHHHHHHHHHHHHHcCCceeeccC-CCCcchhhhHhhhcCCCCCeEEEEecCC
Q 007415 466 AVFFEWLS--KRGTHANLQAVPIPTSKAAAVQDIFNLAAEKLGFKFLATKS-SKSSDGRRSLRAQFDRNCSFFYVELPEG 542 (604)
Q Consensus 466 ~v~~E~~~--~~~~H~HihvvPvp~~~~~~~~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~i~~~~~Yf~v~~~~~ 542 (604)
|||+|.+. ++.+|+-|||||||.+.+..++.||++|+.+++.||+++.. ...+....+||+.||+++|||+|||+..
T Consensus 485 viFyE~a~~l~rrpH~~IeCIPvpqeig~map~YFKkAI~esE~Ews~~~nkkliets~k~lR~~IpKglpYfhV~Fgld 564 (628)
T KOG2477|consen 485 VIFYENAPSLQRRPHTAIECIPVPQEIGSMAPAYFKKAISESEEEWSHRKNKKLIETSKKALRKMIPKGLPYFHVWFGLD 564 (628)
T ss_pred eEEEeccCccccCCceeEEEeechHHhhhhhhHHHHHHHhhhHHHHHhhhHHHHHHhhHHHHHHhcccCCCeEEEEEecc
Confidence 99999332 34689999999999999999999999999999999975443 1122235789999999999999999999
Q ss_pred cEEEEEeccCCccCCccHHHHHHHhcCCCccccccccCCChHHHHHHHHHHHhcCccCCCCC
Q 007415 543 TVLSHLIEENERFPAQFGREVLAGLLNIADKADWRNCMLGKEEETKMVEDFKKRFEAFDPNQ 604 (604)
Q Consensus 543 ~~~~~~i~~~~~f~~qFgR~Vla~lL~lp~r~~Wr~c~~~~~ee~~~~~~F~~~f~~fD~~~ 604 (604)
+||+|||+++..||.||||+|||+||+||+. .||.-..........++.|++.|++|||||
T Consensus 565 ~GfaHVIEded~fpsnfa~eViagMLeLpp~-~wRrr~~~~~kqk~rv~~Fa~~wekfDwTK 625 (628)
T KOG2477|consen 565 GGFAHVIEDEDGFPSNFAREVIAGMLELPPE-VWRRRGSWTGKQKPRVDMFASRWEKFDWTK 625 (628)
T ss_pred CceeeeecccccCcchHHHHHHHHHhhCCHH-HHhhcchhhcCcchHHHHHHHhcccccccc
Confidence 9999999999999999999999999999986 598776666677889999999999999997
No 3
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=100.00 E-value=4.9e-44 Score=363.64 Aligned_cols=219 Identities=26% Similarity=0.450 Sum_probs=176.9
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHhhcC-CCcEEEEecCCCCCCh-------------hhHHHHHHHhcccCCCCCcEEEEc
Q 007415 6 ILLCGDVLGRLNQLFKRVQSVNKSAG-PFDAVLCVGQFFPDSS-------------ELLDEFMNYVEGRSEIPIPTYFIG 71 (604)
Q Consensus 6 ILv~GDvhG~~~~l~~kv~~l~~k~G-pfD~vi~~GDff~~~~-------------~~~~~~~~~l~g~~~~p~ptyfv~ 71 (604)
|.|+||+||+|+.++++++.++++++ ++|+|||||||+.... ..+.+|.+|++|..++|+|||||+
T Consensus 1 i~v~Gd~HG~~~~~~~~~~~~~~~~~~~~D~lI~~GDf~~~~~~~d~~~~~~p~k~~~~~~f~~~~~g~~~~p~~t~fi~ 80 (262)
T cd00844 1 IAVEGCCHGELDKIYETLEKIEKKEGTKVDLLICCGDFQAVRNEADLKCMAVPPKYRKMGDFYKYYSGEKKAPILTIFIG 80 (262)
T ss_pred CEEEecCCccHHHHHHHHHHHHHhcCCCCcEEEEcCCCCCcCCcchhhhhccchhhhhhhhHHHHhcCCccCCeeEEEEC
Confidence 68999999999999999999998876 8999999999976521 134578899999999999999999
Q ss_pred CCCCChHHHHHHHhccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCC-----CCCCCCHHHHHHHH
Q 007415 72 DYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQ-----QFGTYSQDDVDALR 146 (604)
Q Consensus 72 GNh~~~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~-----~~~~~te~d~~~L~ 146 (604)
||||+ .+++..+. .|+|+++||+||++++|++++|+|||||||++..... ...+|+++++.++.
T Consensus 81 GNHE~-~~~l~~l~----------~gg~v~~Ni~~Lg~~~v~~~~GlrIaGLsG~~~~~~~~~~~~~~~~~t~~~~rs~y 149 (262)
T cd00844 81 GNHEA-SNYLWELP----------YGGWVAPNIYYLGYAGVVNFGGLRIAGLSGIYKSHDYRKGHFERPPYSEDTKRSAY 149 (262)
T ss_pred CCCCC-HHHHHhhc----------CCCeecCcEEEecCCCEEEECCeEEEEecccccccccccccccCCCCCHHHHHHhh
Confidence 99997 45666654 3679999999999999999999999999999764321 13478888876543
Q ss_pred H--------hhcCCCCccEEEeCCCCccccccccccc-------cccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcc
Q 007415 147 A--------LAEEPGIVDLFLTNEWPSGVTNKAAASD-------MLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFY 211 (604)
Q Consensus 147 ~--------l~~~~~~vDILLTh~wP~gi~~~~~~~~-------~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fy 211 (604)
. +.....+|||||||+||.||.+.++.+. +...+...+.||+.+++|++++|||||||||.|.+|
T Consensus 150 ~~r~~~~~kl~~~~~~vDIlLSHdWP~gI~~~~~~~~l~~~~~~~~~~~~~~~~Gs~~~~~ll~~lkPryhf~gH~H~~f 229 (262)
T cd00844 150 HVRNIEVFKLKQLKQPIDIFLSHDWPRGIYKHGDKKQLLRKKPFFRQDIESGTLGSPAAEELLKHLKPRYWFSAHLHVKF 229 (262)
T ss_pred hhhHHHHHHHHhcCCCCcEEEeCCCCcchhhccchHHhhhcCccchhcccccCCCCHHHHHHHHHhCCCEEEEecCCccc
Confidence 1 2222358999999999999988766321 111222237899999999999999999999999988
Q ss_pred c-ccccccC---CCcceeEEEEcCCCCC
Q 007415 212 A-REPYSNV---DAVHVTRFLGLAPVGN 235 (604)
Q Consensus 212 E-r~Py~~~---~~~~~TRFI~L~~~gn 235 (604)
| +.||.|. +..++|||||||++-+
T Consensus 230 ~~~~~~~~~~~~~~~~~TRFiaL~k~~~ 257 (262)
T cd00844 230 AALVPHENKSPGNTNKETKFLALDKCLP 257 (262)
T ss_pred ceecCCcccccCCCCcceEEEEcccccC
Confidence 8 5699983 3578999999999976
No 4
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=100.00 E-value=3.3e-40 Score=308.13 Aligned_cols=145 Identities=50% Similarity=0.933 Sum_probs=127.4
Q ss_pred EEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChHHHHHHHhc
Q 007415 7 LLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLAASK 86 (604)
Q Consensus 7 Lv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~~l~~l~~ 86 (604)
||+||+||+++.+|++++++++|+||||++|||||||+...+ .++|.+|++|..++|+||||++|||+
T Consensus 1 LV~G~~~G~l~~~~~kv~~~~~k~gpFd~~ic~Gdff~~~~~-~~~~~~y~~g~~~~pipTyf~ggn~~----------- 68 (150)
T cd07380 1 LVCGDVNGRLKALFEKVNTINKKKGPFDALLCVGDFFGDDED-DEELEAYKDGSKKVPIPTYFLGGNNP----------- 68 (150)
T ss_pred CeeecCCccHHHHHHHHHHHhcccCCeeEEEEecCccCCccc-hhhHHHHhcCCccCCCCEEEECCCCC-----------
Confidence 799999999999999999999999999999999999998654 36899999999999999999999741
Q ss_pred cccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcCCCCccEEEeCCCCcc
Q 007415 87 NSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNEWPSG 166 (604)
Q Consensus 87 ~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l~~~~~~vDILLTh~wP~g 166 (604)
++||||||+||+|
T Consensus 69 -------------------------------------------------------------------~~DILlTh~wP~g 81 (150)
T cd07380 69 -------------------------------------------------------------------GVDILLTSEWPKG 81 (150)
T ss_pred -------------------------------------------------------------------CCCEEECCCCchh
Confidence 3899999999999
Q ss_pred ccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcccccccccCC-----CcceeEEEEcCCC
Q 007415 167 VTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVD-----AVHVTRFLGLAPV 233 (604)
Q Consensus 167 i~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fyEr~Py~~~~-----~~~~TRFI~L~~~ 233 (604)
|.+.++... .....+.||+.|++|++++|||||||||.+.||||+||+|+. ..++||||+||++
T Consensus 82 i~~~~~~~~---~~~~~~~GS~~i~~l~~~lkPrYhf~gh~~~fyer~Pf~~~~~~~~~~~~~TRFi~La~~ 150 (150)
T cd07380 82 ISKLSKVPF---EETLLICGSDLIAELAKKLKPRYHFAGLEGVFYEREPYRNDSVLEEKAEHVTRFIGLAPV 150 (150)
T ss_pred hhhhCCCcc---cccccCCCCHHHHHHHHHcCCCeEeecCCCceEeecCccCCCccccccCcceeEEeccCC
Confidence 976554311 111247899999999999999999999999999999999985 3789999999985
No 5
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=100.00 E-value=1.2e-38 Score=321.43 Aligned_cols=216 Identities=25% Similarity=0.452 Sum_probs=178.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhhc-CCCcEEEEecCCCCC-------------ChhhHHHHHHHhcccCCCCCcEEE
Q 007415 4 PRILLCGDVLGRLNQLFKRVQSVNKSA-GPFDAVLCVGQFFPD-------------SSELLDEFMNYVEGRSEIPIPTYF 69 (604)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~-GpfD~vi~~GDff~~-------------~~~~~~~~~~~l~g~~~~p~ptyf 69 (604)
|||.|-|++||.++.+++.+..++++. +|+|++||||||++. .+..+++|..|++|+.++|+||+|
T Consensus 1 MrIaVqGCcHG~Ld~iYkti~~~ek~~~tkVDLLlccGDFQavRn~~D~~siavPpKy~~m~~F~~YYsge~~APVlTIF 80 (456)
T KOG2863|consen 1 MRIAVQGCCHGELDNIYKTISLIEKRGNTKVDLLLCCGDFQAVRNEQDLKSIAVPPKYRRMGDFYKYYSGEIKAPVLTIF 80 (456)
T ss_pred CceeeecccchhHHHHHHHHHHHHHcCCCCccEEEEccchHhhcchhhcccccCCHHHHHHHHHHHHhCCcccCceeEEE
Confidence 799999999999999999999998884 599999999999764 235688899999999999999999
Q ss_pred EcCCCCChHHHHHHHhccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCC-----CCCCCCC------
Q 007415 70 IGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEG-----QQFGTYS------ 138 (604)
Q Consensus 70 v~GNh~~~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~-----~~~~~~t------ 138 (604)
|+|||+. ++++.+|+ -|+|+++||+|||..||+.++|+||||+||++..-. ..+..|+
T Consensus 81 IGGNHEA-snyL~eLp----------yGGwVApNIyYlG~agVv~~~gvRIggiSGI~k~~dy~kgh~E~ppyn~stiRs 149 (456)
T KOG2863|consen 81 IGGNHEA-SNYLQELP----------YGGWVAPNIYYLGYAGVVNFGGVRIGGISGIYKEHDYRKGHFEWPPYNNSTIRS 149 (456)
T ss_pred ecCchHH-HHHHHhcc----------cCceeccceEEeeecceEEECCEEEeeccchhhhhhcccCCCCCCCccchhhhh
Confidence 9999995 78888886 378999999999999999999999999999986411 1133333
Q ss_pred -----HHHHHHHHHhhcCCCCccEEEeCCCCccccccccccc-------cccCcCCCCCCcHHHHHHHHHhCCCEEEEcc
Q 007415 139 -----QDDVDALRALAEEPGIVDLFLTNEWPSGVTNKAAASD-------MLVGISDSSNTDSTVSELVAEIKPRYHIAGS 206 (604)
Q Consensus 139 -----e~d~~~L~~l~~~~~~vDILLTh~wP~gi~~~~~~~~-------~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh 206 (604)
..|+..|..+ ..++||+|||+||.||...++... +.+.++....||+++.+|+++|||+|||++|
T Consensus 150 iYHvR~~dV~~Lkql---k~piDIfLSHDWP~GI~~yGd~~~LLr~KPFFrqeie~~~LGSp~~~eLL~~LkP~yWfsAH 226 (456)
T KOG2863|consen 150 IYHVRISDVAKLKQL---KHPIDIFLSHDWPRGIYYYGDKKQLLRLKPFFRQEIEEGKLGSPALEELLEDLKPQYWFSAH 226 (456)
T ss_pred hhhhhhhhhHHHHhh---cCcceEEeecCCCcchhhcCCHHHHHhcCcHHHHHHhcCCcCChHHHHHHHHhCcchhhhhh
Confidence 4455566665 578999999999999988876532 3344455679999999999999999999999
Q ss_pred CCCccc-ccccccCCCcceeEEEEcCCCCC
Q 007415 207 KGVFYA-REPYSNVDAVHVTRFLGLAPVGN 235 (604)
Q Consensus 207 ~~~fyE-r~Py~~~~~~~~TRFI~L~~~gn 235 (604)
.|+-|. ..+. + ...++|.|++|.++-.
T Consensus 227 LH~KFaA~v~H-~-~~~~~tkflaldKclp 254 (456)
T KOG2863|consen 227 LHVKFAALVQH-N-KRSHVTKFLALDKCLP 254 (456)
T ss_pred HhhHHhhhhcc-c-CcCCCcccccccccCC
Confidence 887554 4433 3 3688999999999975
No 6
>PF04677 CwfJ_C_1: Protein similar to CwfJ C-terminus 1; InterPro: IPR006768 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues. Cwf19 is part of the Cdc5p complex involved in mRNA splicing []. This domain is found in association with IPR006767 from INTERPRO, which is generally C-terminal and adjacent to this domain.
Probab=100.00 E-value=1.9e-35 Score=265.96 Aligned_cols=116 Identities=43% Similarity=0.850 Sum_probs=110.5
Q ss_pred ccCCCCCCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHhcC
Q 007415 384 SANRSKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQG 463 (604)
Q Consensus 384 ~~~~~~~C~FC~~~~~~~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~~g 463 (604)
..+.+++||||++|+++++|||||+|+++||++|+|||.+||+||||++|++|+.++|+++|+||++|+++|++||++.|
T Consensus 6 ~~~~~~~C~fCl~n~~~~khliisiG~~~YLalpkg~L~~gH~lIvPi~H~~s~~~~de~~~~Ei~~f~~~L~~mf~~~~ 85 (121)
T PF04677_consen 6 QNKAPDNCWFCLSNPNVEKHLIISIGDEVYLALPKGPLVPGHCLIVPIQHVPSLTELDEEVWEEIRNFQKSLRKMFASQG 85 (121)
T ss_pred cCCCCCCCCCccCCCCccceEEEEEcCcEEEEeCCCCccCCEEEEEecceecccccCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEeeccCCCCeeEEEEEecCcchHHHHHHHHH
Q 007415 464 KEAVFFEWLSKRGTHANLQAVPIPTSKAAAVQDIFN 499 (604)
Q Consensus 464 ~~~v~~E~~~~~~~H~HihvvPvp~~~~~~~~~~f~ 499 (604)
+++||||.+..+..|+||||||||++++++++.|||
T Consensus 86 ~~vvf~E~~~~~~~H~~iq~vPvp~~~~~~~~~yFk 121 (121)
T PF04677_consen 86 KDVVFFERVRKRNPHTHIQCVPVPKELGEKAPSYFK 121 (121)
T ss_pred CCEEEEEEeCCCCcEEEEEEEEcCHHHHHhhhhhcC
Confidence 999999955666899999999999999999999996
No 7
>PF04676 CwfJ_C_2: Protein similar to CwfJ C-terminus 2; InterPro: IPR006767 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues. Cwf19 is part of the Cdc5p complex involved in mRNA splicing []. This domain is found in association with IPR006768 from INTERPRO, which is generally N-terminal and adjacent to this domain.
Probab=99.95 E-value=4.1e-28 Score=211.11 Aligned_cols=96 Identities=46% Similarity=0.831 Sum_probs=86.6
Q ss_pred ceeec--cCCCCcchhhhHhhhcCCCCCeEEEEecCCcEEEEEeccCCccCCccHHHHHHHhcCCCccccccccCCChHH
Q 007415 508 KFLAT--KSSKSSDGRRSLRAQFDRNCSFFYVELPEGTVLSHLIEENERFPAQFGREVLAGLLNIADKADWRNCMLGKEE 585 (604)
Q Consensus 508 ~~~~~--~~~~~~~~~~~l~~~i~~~~~Yf~v~~~~~~~~~~~i~~~~~f~~qFgR~Vla~lL~lp~r~~Wr~c~~~~~e 585 (604)
||++| ++.....++.++++++++++|||+|+++.+++|+|+|+++++||+||||+|||+||+||+|++||+|.+++++
T Consensus 1 ews~n~~kk~~~~~~~~~~~~~~~~~~~Yf~V~~~~~~~~~~vie~~~~f~~qFgReVla~lL~lp~r~~Wr~c~~~~~e 80 (98)
T PF04676_consen 1 EWSQNEKKKLIDTSKKKGLRRSIPKGFPYFHVEFPDGKGYAHVIEDEERFPLQFGREVLAGLLNLPERADWRKCQQSKEE 80 (98)
T ss_pred CccccccCCcccccChHHHHHhcCCCCCEEEEEEeCCCEEEEECCcCCccCcchHHHHHHHHhCCCchHHHHhcccCHHH
Confidence 57777 3322222256889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCccCCCC
Q 007415 586 ETKMVEDFKKRFEAFDPN 603 (604)
Q Consensus 586 e~~~~~~F~~~f~~fD~~ 603 (604)
|+++|++||++|++||||
T Consensus 81 e~~~~~~Fk~~f~~fD~T 98 (98)
T PF04676_consen 81 ETQDAEAFKKAFKPFDWT 98 (98)
T ss_pred HHHHHHHHHHHccCcCCC
Confidence 999999999999999998
No 8
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=99.89 E-value=1.4e-21 Score=189.95 Aligned_cols=199 Identities=18% Similarity=0.224 Sum_probs=144.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCC----CCChhhHHHHHHHhcccCCCCCcEEEEcCCCCC
Q 007415 1 MSPPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFF----PDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVG 76 (604)
Q Consensus 1 m~~~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff----~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~ 76 (604)
|.+||||++.|+||+...+-+.+.....+ .+|+++++||+- ++.....+.+ .+..+....+|+|+++||+|
T Consensus 1 ~~~mkil~vtDlHg~~~~~~k~~~~~~~~--~~D~lviaGDlt~~~~~~~~~~~~~~--~~e~l~~~~~~v~avpGNcD- 75 (226)
T COG2129 1 IKKMKILAVTDLHGSEDSLKKLLNAAADI--RADLLVIAGDLTYFHFGPKEVAEELN--KLEALKELGIPVLAVPGNCD- 75 (226)
T ss_pred CCcceEEEEeccccchHHHHHHHHHHhhc--cCCEEEEecceehhhcCchHHHHhhh--HHHHHHhcCCeEEEEcCCCC-
Confidence 67899999999999987555444443322 589999999984 3332222221 02223557799999999976
Q ss_pred hHHHHHHHhccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHH-HHHhhc-CCCC
Q 007415 77 AAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDA-LRALAE-EPGI 154 (604)
Q Consensus 77 ~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~-L~~l~~-~~~~ 154 (604)
+..+...+... ..|++ ..+.+++|+.|.++||+.++++++.++|+|+++.. |+.+.+ ..+.
T Consensus 76 ~~~v~~~l~~~-------------~~~v~----~~v~~i~~~~~~G~Ggsn~tp~nt~~e~~E~~I~s~l~~~v~~~~~~ 138 (226)
T COG2129 76 PPEVIDVLKNA-------------GVNVH----GRVVEIGGYGFVGFGGSNPTPFNTPREFSEDEIYSKLKSLVKKADNP 138 (226)
T ss_pred hHHHHHHHHhc-------------ccccc----cceEEecCcEEEEecccCCCCCCCccccCHHHHHHHHHHHHhcccCc
Confidence 56666666420 23444 36889999999999999999999999999999886 444332 1222
Q ss_pred ccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcccccccccCCCcceeEEEEcCCCC
Q 007415 155 VDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVG 234 (604)
Q Consensus 155 vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~~~g 234 (604)
+-||+||.||++..+. .|.+ -.|+||.+|+++++++||+.++|||.|.. +..+..+.|.|||+|+.+
T Consensus 139 ~~Il~~HaPP~gt~~d-----~~~g--~~hvGS~~vr~~ieefqP~l~i~GHIHEs------~G~d~iG~TivVNPG~~~ 205 (226)
T COG2129 139 VNILLTHAPPYGTLLD-----TPSG--YVHVGSKAVRKLIEEFQPLLGLHGHIHES------RGIDKIGNTIVVNPGPLG 205 (226)
T ss_pred ceEEEecCCCCCcccc-----CCCC--ccccchHHHHHHHHHhCCceEEEeeeccc------ccccccCCeEEECCCCcc
Confidence 2299999999999653 1333 15899999999999999999999997642 222367789999999965
No 9
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=99.88 E-value=2.4e-21 Score=192.94 Aligned_cols=195 Identities=17% Similarity=0.214 Sum_probs=134.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChHHHHH
Q 007415 3 PPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLL 82 (604)
Q Consensus 3 ~~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~~l~ 82 (604)
.+|||+++|+||++..+-..++ ..++. .+|+||++||+...... .+++.+++.-...+++|+|+|+||||.+ +..
T Consensus 4 ~~kIl~iSDiHgn~~~le~l~~-~~~~~-~~D~vv~~GDl~~~g~~-~~~~~~~l~~l~~l~~pv~~V~GNhD~~--v~~ 78 (224)
T cd07388 4 VRYVLATSNPKGDLEALEKLVG-LAPET-GADAIVLIGNLLPKAAK-SEDYAAFFRILGEAHLPTFYVPGPQDAP--LWE 78 (224)
T ss_pred eeEEEEEEecCCCHHHHHHHHH-HHhhc-CCCEEEECCCCCCCCCC-HHHHHHHHHHHHhcCCceEEEcCCCChH--HHH
Confidence 5899999999999876644443 33333 48999999999654311 1223344433356778999999999963 334
Q ss_pred HHhccccccCcccCCceecCCEEEcCCCCeEEEcC-cEEEEEecccCCCCCCCCCCCHHHH--------HH-HHHhhcCC
Q 007415 83 AASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHG-LSVAYLSGRQSSEGQQFGTYSQDDV--------DA-LRALAEEP 152 (604)
Q Consensus 83 ~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~G-lrIa~lgG~~~~~~~~~~~~te~d~--------~~-L~~l~~~~ 152 (604)
.+... .+...+-|+...|+. +++++.| ++|+|+||+..++ .+++|+++ +. |..+....
T Consensus 79 ~l~~~-------~~~~~~~p~~~~lh~-~~~~~~g~~~~~GlGGs~~~~----~e~sE~e~~~~~~~~~~~~l~~~~~~~ 146 (224)
T cd07388 79 YLREA-------YNAELVHPEIRNVHE-TFAFWRGPYLVAGVGGEIADE----GEPEEHEALRYPAWVAEYRLKALWELK 146 (224)
T ss_pred HHHHH-------hcccccCccceecCC-CeEEecCCeEEEEecCCcCCC----CCcCHHHHhhhhhhHHHHHHHHHHhCC
Confidence 33310 001122345556664 5677765 8999999998764 45678873 22 22232224
Q ss_pred CCccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcccccccccCCCcceeEEEEcCC
Q 007415 153 GIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAP 232 (604)
Q Consensus 153 ~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~~ 232 (604)
...||||||.||.|+.. .++||+++++++++.+|++++|||.|.-+| ..+-|.+||+|+
T Consensus 147 ~~~~VLv~H~PP~g~g~-------------~h~GS~alr~~I~~~~P~l~i~GHih~~~~--------~~g~t~vvNpg~ 205 (224)
T cd07388 147 DYRKVFLFHTPPYHKGL-------------NEQGSHEVAHLIKTHNPLVVLVGGKGQKHE--------LLGASWVVVPGD 205 (224)
T ss_pred CCCeEEEECCCCCCCCC-------------CccCHHHHHHHHHHhCCCEEEEcCCceeEE--------EeCCEEEECCCc
Confidence 56999999999999821 379999999999999999999999774333 456799999999
Q ss_pred CCC
Q 007415 233 VGN 235 (604)
Q Consensus 233 ~gn 235 (604)
+..
T Consensus 206 ~~~ 208 (224)
T cd07388 206 LSE 208 (224)
T ss_pred ccC
Confidence 754
No 10
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=99.84 E-value=2.6e-19 Score=172.83 Aligned_cols=187 Identities=16% Similarity=0.131 Sum_probs=128.6
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChHHHHHHHh
Q 007415 6 ILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLAAS 85 (604)
Q Consensus 6 ILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~~l~~l~ 85 (604)
||++||+||++..+.. ..+ +..++|+||++||+............+.+ ...++|+|+|+||||.. .....+
T Consensus 1 i~~~sD~H~~~~~~~~--~~~--~~~~~D~vv~~GDl~~~~~~~~~~~~~~l---~~~~~p~~~v~GNHD~~-~~~~~~- 71 (188)
T cd07392 1 ILAISDIHGDVEKLEA--IIL--KAEEADAVIVAGDITNFGGKEAAVEINLL---LAIGVPVLAVPGNCDTP-EILGLL- 71 (188)
T ss_pred CEEEEecCCCHHHHHH--HHh--hccCCCEEEECCCccCcCCHHHHHHHHHH---HhcCCCEEEEcCCCCCH-HHHHhh-
Confidence 7999999999987654 223 23368999999999765432111122444 45789999999999963 222221
Q ss_pred ccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcCCCCccEEEeCCCCc
Q 007415 86 KNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNEWPS 165 (604)
Q Consensus 86 ~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l~~~~~~vDILLTh~wP~ 165 (604)
.++...+. ..++.++|++|++++|...........+++++++.+..+.......+||+||.||.
T Consensus 72 ---------------~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~ilv~H~pp~ 135 (188)
T cd07392 72 ---------------TSAGLNLH-GKVVEVGGYTFVGIGGSNPTPFNTPIELSEEEIVSDGRLNNLLAKNLILVTHAPPY 135 (188)
T ss_pred ---------------hcCcEecC-CCEEEECCEEEEEeCCCCCCCCCCccccCHHHHHHhhhhhccCCCCeEEEECCCCc
Confidence 12344555 36777899999999998654444445778888887632333345789999999998
Q ss_pred cc-cccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcccccccccCCCcceeEEEEcC
Q 007415 166 GV-TNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLA 231 (604)
Q Consensus 166 gi-~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~ 231 (604)
+. .+... . ..+.|+..+.++++..+|+++||||.|..+.. .....|.+||.|
T Consensus 136 ~~~~d~~~-----~---~~~~g~~~l~~li~~~~~~~~l~GH~H~~~~~------~~~~~~~~~n~G 188 (188)
T cd07392 136 GTAVDRVS-----G---GFHVGSKAIRKFIEERQPLLCICGHIHESRGV------DKIGNTLVVNPG 188 (188)
T ss_pred CCcccccC-----C---CCccCCHHHHHHHHHhCCcEEEEeccccccce------eeeCCeEEecCC
Confidence 84 32111 1 12579999999999999999999998865431 134568999876
No 11
>PRK10687 purine nucleoside phosphoramidase; Provisional
Probab=99.71 E-value=3e-17 Score=147.97 Aligned_cols=100 Identities=19% Similarity=0.171 Sum_probs=82.1
Q ss_pred CCCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHH-----hcC
Q 007415 389 KECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYK-----NQG 463 (604)
Q Consensus 389 ~~C~FC~~~~~~~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~-----~~g 463 (604)
++|+||.+..+.....+|++++.++++++..|+++||+||||++|++++.+++++++.++..+.+.++++.+ ..|
T Consensus 3 ~~CiFC~I~~g~~p~~~v~edd~~~aflD~~P~~~GH~LViPK~H~~~l~dl~~~~~~~l~~l~~~~~~~~~~~~~~~~g 82 (119)
T PRK10687 3 EETIFSKIIRREIPSDIVYQDELVTAFRDISPQAPTHILIIPNILIPTVNDVSAEHEQALGRMITVAAKIAEQEGIAEDG 82 (119)
T ss_pred CCCchhhhhcCCCCCCEEEECCCEEEEEcCCCCCCccEEEEehhHhCChhHCChHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 479999987554445578999999999999999999999999999999999999999999988877776654 245
Q ss_pred CceEEEe--eccCCCCeeEEEEEecCc
Q 007415 464 KEAVFFE--WLSKRGTHANLQAVPIPT 488 (604)
Q Consensus 464 ~~~v~~E--~~~~~~~H~HihvvPvp~ 488 (604)
++++++. .+++.+.|+|+|+||...
T Consensus 83 ~~l~~n~G~~agQ~V~HlHiHvI~g~~ 109 (119)
T PRK10687 83 YRLIMNTNRHGGQEVYHIHMHLLGGRP 109 (119)
T ss_pred eEEEEeCCCcCCcccCEEEEEECCCcc
Confidence 6666665 334447899999999744
No 12
>COG0537 Hit Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]
Probab=99.66 E-value=2.8e-16 Score=145.38 Aligned_cols=99 Identities=21% Similarity=0.205 Sum_probs=81.5
Q ss_pred CCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHH----HHhcCCc
Q 007415 390 ECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMY----YKNQGKE 465 (604)
Q Consensus 390 ~C~FC~~~~~~~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~----~~~~g~~ 465 (604)
.|.||.+-.......+|+++++++++++..|.++||+||||++|+.++.+++++++.+|....+.+.+. +.+.|++
T Consensus 2 ~ciFc~ii~~e~~~~~Vye~~~~~afld~~P~~~gH~LviPk~h~~~l~~l~~~~~~~l~~~~~~ia~al~~~~~~~g~n 81 (138)
T COG0537 2 MCIFCKIIRGEIPANKVYEDEHVLAFLDIYPAAPGHTLVIPKRHVSDLEDLDPEELAELFLLAQKIAKALKEAFGADGYN 81 (138)
T ss_pred CceeeeeecCCCCceEEEeCCCEEEEecCCCCCCCeEEEEeccchhhhhhCCHHHHHHHHHHHHHHHHHHHHHhCCCceE
Confidence 699998764444556899999999999999999999999999999999999999999998776555544 5567888
Q ss_pred eEEEe--eccCCCCeeEEEEEecCc
Q 007415 466 AVFFE--WLSKRGTHANLQAVPIPT 488 (604)
Q Consensus 466 ~v~~E--~~~~~~~H~HihvvPvp~ 488 (604)
++.+. .+++-+.|+|+|+||+-.
T Consensus 82 i~~N~g~~agq~V~HlH~HvIPr~~ 106 (138)
T COG0537 82 IGINNGKAAGQEVFHLHIHIIPRYK 106 (138)
T ss_pred EEEecCcccCcCcceEEEEEcCCcC
Confidence 87775 334347899999999754
No 13
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=99.61 E-value=3.4e-14 Score=138.07 Aligned_cols=200 Identities=18% Similarity=0.243 Sum_probs=119.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHH--------------------------HHh
Q 007415 4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFM--------------------------NYV 57 (604)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~--------------------------~~l 57 (604)
-|||+++|.+|+++.+-+.+..+..+. .|+|+++||+...... .++|. .++
T Consensus 6 ~kilA~s~~~g~~e~l~~l~~~~~e~~--~D~~v~~G~~~~~~a~-~~e~~~a~~~~r~p~k~~i~~e~~~~~e~~~~ff 82 (255)
T PF14582_consen 6 RKILAISNFRGDFELLERLVEVIPEKG--PDAVVFVGDLLKAEAR-SDEYERAQEEQREPDKSEINEEECYDSEALDKFF 82 (255)
T ss_dssp -EEEEEE--TT-HHHHHHHHHHHHHHT---SEEEEES-SS-TCHH-HHHHHHHHHTT----THHHHHHHHHHHHHHHHHH
T ss_pred hhheeecCcchHHHHHHHHHhhccccC--CCEEEEeccccccchh-hhHHHHHhhhccCcchhhhhhhhhhhHHHHHHHH
Confidence 389999999999998877777777763 7999999999665221 11222 455
Q ss_pred cccCCCCCcEEEEcCCCCChHH-HHHHHhccccccCcccCCceecCCEEEcCCCCeEEEcC-cEEEEEecccCCCCCC--
Q 007415 58 EGRSEIPIPTYFIGDYGVGAAK-VLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHG-LSVAYLSGRQSSEGQQ-- 133 (604)
Q Consensus 58 ~g~~~~p~ptyfv~GNh~~~~~-~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~G-lrIa~lgG~~~~~~~~-- 133 (604)
.-...+++||++||||+|.|.+ ++..+.. ..-+.+|++.++ .+++.+.| +-|+|+||........
T Consensus 83 ~~L~~~~~p~~~vPG~~Dap~~~~lr~a~~----------~e~v~p~~~~vH-~sf~~~~g~y~v~G~GGeI~~~~~~~~ 151 (255)
T PF14582_consen 83 RILGELGVPVFVVPGNMDAPERFFLREAYN----------AEIVTPHIHNVH-ESFFFWKGEYLVAGMGGEITDDQREEE 151 (255)
T ss_dssp HHHHCC-SEEEEE--TTS-SHHHHHHHHHH----------CCCC-TTEEE-C-TCEEEETTTEEEEEE-SEEESSS-BCS
T ss_pred HHHHhcCCcEEEecCCCCchHHHHHHHHhc----------cceeccceeeee-eeecccCCcEEEEecCccccCCCcccc
Confidence 5557899999999999998755 3444431 223679999999 47888887 9999999986433221
Q ss_pred -CCCC-CHHHHHHHHHhhcCCCCccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcc
Q 007415 134 -FGTY-SQDDVDALRALAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFY 211 (604)
Q Consensus 134 -~~~~-te~d~~~L~~l~~~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fy 211 (604)
.-.| .-+..-.|+-+-.....--|||+|.+|. +. .+ ..+.||..+++|+++.+|+..+|||.|.--
T Consensus 152 ~~LrYP~weaey~lk~l~elk~~r~IlLfhtpPd-~~---------kg--~~h~GS~~V~dlIk~~~P~ivl~Ghihe~~ 219 (255)
T PF14582_consen 152 FKLRYPAWEAEYSLKFLRELKDYRKILLFHTPPD-LH---------KG--LIHVGSAAVRDLIKTYNPDIVLCGHIHESH 219 (255)
T ss_dssp SS-EEEHHHHHHHHGGGGGCTSSEEEEEESS-BT-BC---------TC--TBTTSBHHHHHHHHHH--SEEEE-SSS-EE
T ss_pred ccccchHHHHHHHHHHHHhcccccEEEEEecCCc-cC---------CC--cccccHHHHHHHHHhcCCcEEEecccccch
Confidence 1111 1121223433322234467999999992 11 11 147999999999999999999999976543
Q ss_pred cccccccCCCcceeEEEEcCCCCC
Q 007415 212 AREPYSNVDAVHVTRFLGLAPVGN 235 (604)
Q Consensus 212 Er~Py~~~~~~~~TRFI~L~~~gn 235 (604)
..+ ...-|-.||+|.+.-
T Consensus 220 ~~e------~lG~TlVVNPGsL~~ 237 (255)
T PF14582_consen 220 GKE------SLGKTLVVNPGSLAE 237 (255)
T ss_dssp --E------EETTEEEEE--BGGG
T ss_pred hhH------HhCCEEEecCccccc
Confidence 222 456799999999854
No 14
>cd01275 FHIT FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Fhit plays a very important role in the development of tumours. Infact, Fhit deletions are among the earliest and most frequent genetic alterations in the development of tumours.
Probab=99.60 E-value=4.1e-15 Score=135.65 Aligned_cols=99 Identities=23% Similarity=0.271 Sum_probs=79.7
Q ss_pred CcccCCCCC-CCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHH----hcCCc
Q 007415 391 CWFCLSSPS-VESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYK----NQGKE 465 (604)
Q Consensus 391 C~FC~~~~~-~~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~----~~g~~ 465 (604)
|+||.+... .+...||++++.++++++..|..+||+||||++|++++.+|+++++.++..+.+.+.+.++ ..+++
T Consensus 1 C~fC~i~~~e~~~~~iv~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~~~~~v~~~l~~~~~~~~~n 80 (126)
T cd01275 1 CVFCDIPIKPDEDNLVFYRTKHSFAVVNLYPYNPGHVLVVPYRHVPRLEDLTPEEIADLFKLVQLAMKALKVVYKPDGFN 80 (126)
T ss_pred CccccCccCCCccccEEEeCCCEEEEEcCCCCCCCcEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCceE
Confidence 999998654 2225789999999999999999999999999999999999999999999988776665554 34666
Q ss_pred eEEEe--eccCCCCeeEEEEEecCcc
Q 007415 466 AVFFE--WLSKRGTHANLQAVPIPTS 489 (604)
Q Consensus 466 ~v~~E--~~~~~~~H~HihvvPvp~~ 489 (604)
+++.. ..++...|+|+|+||+...
T Consensus 81 ~~~~~g~~~gq~v~H~HiHiiPR~~~ 106 (126)
T cd01275 81 IGINDGKAGGGIVPHVHIHIVPRWNG 106 (126)
T ss_pred EEEeCCcccCCCcCEEEEEEeCCcCC
Confidence 66554 2233468999999997543
No 15
>cd01277 HINT_subgroup HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides. This subgroup includes members from all three forms of cellular life. Although the biochemical function has not been characterised for many of the members of this subgroup, the proteins from Yeast have been shown to be involved in secretion, peroxisome formation and gene expression.
Probab=99.59 E-value=7.7e-15 Score=128.63 Aligned_cols=97 Identities=22% Similarity=0.256 Sum_probs=78.0
Q ss_pred CCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHH----hcCCc
Q 007415 390 ECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYK----NQGKE 465 (604)
Q Consensus 390 ~C~FC~~~~~~~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~----~~g~~ 465 (604)
+|.||.+..+.....||++++++++++|..|..+||+||+|++|+.++.+++++++.++....+.+.+.+. ..+++
T Consensus 1 ~C~~c~ii~~e~~~~iv~e~~~~~a~~~~~~~~pg~~lI~Pk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~n 80 (103)
T cd01277 1 DCIFCKIIAGEIPSYKVYEDDHVLAFLDINPASKGHTLVIPKKHYENLLDLDPEELAELILAAKKVARALKKALKADGLN 80 (103)
T ss_pred CCccccccCCCCCCCEEEeCCCEEEEECCCCCCCeeEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCceE
Confidence 59999986543334489999999999999999999999999999999999999999998877665555444 45777
Q ss_pred eEEEe--eccCCCCeeEEEEEec
Q 007415 466 AVFFE--WLSKRGTHANLQAVPI 486 (604)
Q Consensus 466 ~v~~E--~~~~~~~H~HihvvPv 486 (604)
+++++ ..++...|+|+|++|+
T Consensus 81 ~~~~~~~~~g~~~~H~HiHiiPR 103 (103)
T cd01277 81 ILQNNGRAAGQVVFHVHVHVIPR 103 (103)
T ss_pred EEEeCCcccCcccCEEEEEEccC
Confidence 77665 2233468999999995
No 16
>cd01276 PKCI_related Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.
Probab=99.53 E-value=3.8e-14 Score=124.65 Aligned_cols=96 Identities=21% Similarity=0.215 Sum_probs=73.9
Q ss_pred CCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHH-----hcCC
Q 007415 390 ECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYK-----NQGK 464 (604)
Q Consensus 390 ~C~FC~~~~~~~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~-----~~g~ 464 (604)
+|+||.+..+.....||++++.+++++|..|.++||+||||++|++++.+|+++++.++..+.+.++++.+ ..|+
T Consensus 1 ~C~fc~i~~~e~~~~iv~e~~~~~a~~~~~p~~~gh~lIiPk~H~~~~~dl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 80 (104)
T cd01276 1 DCIFCKIIRGEIPAKKVYEDDEVLAFHDINPQAPVHILVIPKKHIASLSDATEEDEELLGHLLSAAAKVAKDLGIAEDGY 80 (104)
T ss_pred CCcceecccCCCccCEEEECCCEEEEECCCCCCCCEEEEEecceeCChHHcccccHHHHHHHHHHHHHHHHHhCCCCCCE
Confidence 49999986543335689999999999999999999999999999999999988777777766555544433 3455
Q ss_pred ceEEEe--eccCCCCeeEEEEEe
Q 007415 465 EAVFFE--WLSKRGTHANLQAVP 485 (604)
Q Consensus 465 ~~v~~E--~~~~~~~H~HihvvP 485 (604)
++++.. .+++...|+|+|+|+
T Consensus 81 n~~~~~g~~~g~~v~H~HiHii~ 103 (104)
T cd01276 81 RLVINCGKDGGQEVFHLHLHLLG 103 (104)
T ss_pred EEEEeCCCCCCCceeEEEEEEeC
Confidence 665554 223335899999997
No 17
>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms []. Crystal structure of rabbit Hint, purified as an adenosine and AMP-binding protein, showed that proteins in the HIT superfamily are conserved as nucleotide-binding proteins and that Hint homologues, which are found in all forms of life, are structurally related to Fhit homologues and GalT-related enzymes, which have more restricted phylogenetic profiles []. Hint homologues including rabbit Hint and yeast Hnt1 hydrolyse adenosine 5' monophosphoramide substrates such as AMP-NH2 and AMP-lysine to AMP plus the amine product and function as positive regulators of Cdk7/Kin28 in vivo []. Fhit homologues are diadenosine polyphosphate hydrolases [] and function as tumour suppressors in human and mouse [] though the tumour suppressing function of Fhit does not depend on ApppA hydrolysis []. The third branch of the HIT superfamily, which includes GalT homologues, contains a related His-X-His-X-Gln motif and transfers nucleoside monophosphate moieties to phosphorylated second substrates rather than hydrolysing them [].; PDB: 3LB5_B 1EMS_A 1Y23_A 3ANO_B 1KPE_B 1KPC_A 4EQE_B 1KPA_A 1KPB_B 4EQG_B ....
Probab=99.46 E-value=3e-13 Score=117.78 Aligned_cols=86 Identities=21% Similarity=0.284 Sum_probs=69.8
Q ss_pred cceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHh----cCCceEEEe--eccCC
Q 007415 402 SHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN----QGKEAVFFE--WLSKR 475 (604)
Q Consensus 402 ~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~----~g~~~v~~E--~~~~~ 475 (604)
...||++++.++++++..|.++||+||||++|+.++.+++++++.+|+...+.+.+.++. .|++++.+. .+++.
T Consensus 5 ~~~vv~e~~~~~~~~~~~p~~~gh~LVipk~H~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~~g~~~gq~ 84 (98)
T PF01230_consen 5 PARVVYEDDHFVAFLDIFPISPGHLLVIPKRHVESLSDLPPEERAELMQLVQKVAKALKEAFGPDGYNVIINNGPAAGQS 84 (98)
T ss_dssp HCEEEEE-SSEEEEEESSTSSTTEEEEEESSTGSSGGGSHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESGGGTSS
T ss_pred CeeEEEECCCEEEEEcCCCCCCeEEEEEecccccchhcCCHHHHHHHHHHHHHHHHHHhcccccceeeccccchhhhcCc
Confidence 345889999999999999999999999999999999999999999999887777766553 466666655 33444
Q ss_pred CCeeEEEEEecC
Q 007415 476 GTHANLQAVPIP 487 (604)
Q Consensus 476 ~~H~HihvvPvp 487 (604)
+.|+|+||||+-
T Consensus 85 v~HlH~HviPR~ 96 (98)
T PF01230_consen 85 VPHLHFHVIPRY 96 (98)
T ss_dssp SSS-EEEEEEES
T ss_pred cCEEEEEEeccc
Confidence 789999999974
No 18
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=99.42 E-value=1e-11 Score=124.51 Aligned_cols=202 Identities=21% Similarity=0.271 Sum_probs=113.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChHHH---
Q 007415 4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKV--- 80 (604)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~~--- 80 (604)
.||+++||+||++... .++.+++ . .+|+||++||+.... .++.+.+ ..++.|+|+|.||||.-...
T Consensus 1 ~rIa~isDiHg~~~~~--~~~~l~~-~-~pD~Vl~~GDi~~~~----~~~~~~l---~~l~~p~~~V~GNHD~~~~~~~~ 69 (238)
T cd07397 1 LRIAIVGDVHGQWDLE--DIKALHL-L-QPDLVLFVGDFGNES----VQLVRAI---SSLPLPKAVILGNHDAWYDATFR 69 (238)
T ss_pred CEEEEEecCCCCchHH--HHHHHhc-c-CCCEEEECCCCCcCh----HHHHHHH---HhCCCCeEEEcCCCccccccccc
Confidence 4899999999997652 2334433 3 479999999997542 1233444 44678999999999853210
Q ss_pred --HHHHhccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEeccc-CCCCCCC-------CCC---CHHH-HHHHH
Q 007415 81 --LLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQ-SSEGQQF-------GTY---SQDD-VDALR 146 (604)
Q Consensus 81 --l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~-~~~~~~~-------~~~---te~d-~~~L~ 146 (604)
.+.+.. .-+...+. ++. .+.+++..+.++.+|+.- +.+...+ ..| +-+| ++.+.
T Consensus 70 ~k~~~l~~----------~L~~lg~~-~l~-~~~~~~~~~~~~vvG~R~~~~~g~~~~~~~~vr~~fgi~s~~eA~~~iv 137 (238)
T cd07397 70 KKGDRVQE----------QLELLGDL-HCG-WGRLDFPPLPLSVVGGRPFSAGGGFWLSKKAVKAVYGVISLEESAQRII 137 (238)
T ss_pred chHHHHHH----------HHHHhCCc-EEe-ecccccCCCCeEEEeeCCccCCCccccCHHHHHHHhCCCCHHHHHHHHH
Confidence 111110 00011111 222 133345555566666541 1111110 111 2222 22322
Q ss_pred Hhh--cCCCCccEEEeCCCCccccccccc----cccccCcCCCCCCcHHHHHHHHHhC----CCEEEEccCCCc--cc--
Q 007415 147 ALA--EEPGIVDLFLTNEWPSGVTNKAAA----SDMLVGISDSSNTDSTVSELVAEIK----PRYHIAGSKGVF--YA-- 212 (604)
Q Consensus 147 ~l~--~~~~~vDILLTh~wP~gi~~~~~~----~~~~~~~~~~~~Gs~~i~~l~~~lk----PrYhf~Gh~~~f--yE-- 212 (604)
+.. ......+|||||..|.|..+.... .+.+.+ ...|.+-+++.+..++ |+||++||.|.- |.
T Consensus 138 e~~~~~~~~~~~VliaH~~~~G~g~~~~~~cg~d~~~~~---~~~G~~~l~~ai~~~~~~~~~~l~~fGH~H~~l~~~~~ 214 (238)
T cd07397 138 AAAKKAPPDLPLILLAHNGPSGLGSDAEDPCGRDWKPPG---GDWGDPDLALAISQIQQGRQVPLVVFGHMHHRLRRGKG 214 (238)
T ss_pred HHhhhcCCCCCeEEEeCcCCcCCCcccccccccccCCcC---CCCCCHHHHHHHHHHhccCCCCEEEeCCccCccccccc
Confidence 221 124567999999999999653321 011222 4689999998888888 899999997643 22
Q ss_pred -ccccccCCCcceeEEEEcCCC
Q 007415 213 -REPYSNVDAVHVTRFLGLAPV 233 (604)
Q Consensus 213 -r~Py~~~~~~~~TRFI~L~~~ 233 (604)
|..+.. ....|-|||-|.+
T Consensus 215 ~r~~~~~--~~~gt~y~N~a~~ 234 (238)
T cd07397 215 LRNMIAV--DREGTVYLNAASV 234 (238)
T ss_pred ccceeee--cCCCeEEEecccc
Confidence 222222 2357999998876
No 19
>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome. All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin.
Probab=99.41 E-value=1.3e-12 Score=114.95 Aligned_cols=95 Identities=18% Similarity=0.116 Sum_probs=73.6
Q ss_pred CCcccCCCCC-C-CcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHh------
Q 007415 390 ECWFCLSSPS-V-ESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN------ 461 (604)
Q Consensus 390 ~C~FC~~~~~-~-~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~------ 461 (604)
.|+||.+..+ . ....||+.++.+++++|..|.++||+||||++|+.++.+++++++.++..+.+.+.+.+..
T Consensus 1 ~c~fc~i~~~e~~~~~~iv~~~~~~~a~~~~~p~~~~h~lIiPk~h~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~ 80 (104)
T cd01278 1 LCHFCDIAKRRDPDPEDQVYEDDRVVVFKDIYPKARHHYLVIPKEHIASLKALTKEDVPLLEHMETVGREKLLRSDNTDP 80 (104)
T ss_pred CCccccCccCCCCCCccEEEeCCCEEEEECCCCCCCceEEEEecCCCCChHHCCHhHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 4999998643 2 2466899999999999999999999999999999999999999999999987766664432
Q ss_pred cCCceEEEeeccCCCCeeEEEEE
Q 007415 462 QGKEAVFFEWLSKRGTHANLQAV 484 (604)
Q Consensus 462 ~g~~~v~~E~~~~~~~H~Hihvv 484 (604)
.|+++++.....+...|+|+|+|
T Consensus 81 ~~~n~g~h~~p~~~v~H~H~Hvi 103 (104)
T cd01278 81 SEFRFGFHAPPFTSVSHLHLHVI 103 (104)
T ss_pred cCeEEEeCCCCCcCeeeEEEEee
Confidence 23443333211223579999997
No 20
>KOG3275 consensus Zinc-binding protein of the histidine triad (HIT) family [Signal transduction mechanisms]
Probab=99.40 E-value=1.1e-12 Score=113.63 Aligned_cols=98 Identities=16% Similarity=0.132 Sum_probs=81.7
Q ss_pred CCCCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccc---cCCCCCCCHHHHHHHHHHHHHHHHHHH-hcC
Q 007415 388 SKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEH---VPNTISTSPECEKELGRFQNSLMMYYK-NQG 463 (604)
Q Consensus 388 ~~~C~FC~~~~~~~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H---~~s~~~l~~~~~~Ei~~~~~~L~~~~~-~~g 463 (604)
...|+||.+-.+.-...||++++.|+++.+..|..|||.||||+.| .+...+.+++....++-..+.+.+.+. ..|
T Consensus 15 ~~~tIF~kIi~keIPa~ii~Edd~~lAF~Di~Pqap~HfLvIPK~hi~~~s~aed~~~e~Lg~ll~~~k~vak~~Gl~~g 94 (127)
T KOG3275|consen 15 AAPTIFCKIIRKEIPAKIIFEDDRCLAFHDIAPQAPGHFLVIPKKHITQLSKAEDRDDELLGHLLPVAKKVAKALGLEDG 94 (127)
T ss_pred CCCcEeeeeecccCCcceEeeccceEEEEecCCCCCceEEEeecccccchhhcccCCHHHHHHHHHHHHHHHHHhCcccc
Confidence 5689999987543334588999999999999999999999999999 556667899999999999888888877 467
Q ss_pred CceEEEe-ec-cCCCCeeEEEEEe
Q 007415 464 KEAVFFE-WL-SKRGTHANLQAVP 485 (604)
Q Consensus 464 ~~~v~~E-~~-~~~~~H~HihvvP 485 (604)
|.++.++ .. .+.+.|+|+||+|
T Consensus 95 Yrvv~NnG~~g~QsV~HvH~Hvlg 118 (127)
T KOG3275|consen 95 YRVVQNNGKDGHQSVYHVHLHVLG 118 (127)
T ss_pred eeEEEcCCcccceEEEEEEEEEeC
Confidence 9999887 32 3346899999999
No 21
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=99.36 E-value=1.1e-11 Score=114.06 Aligned_cols=133 Identities=20% Similarity=0.310 Sum_probs=92.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCCh-hhHHHHHHHhcccCCCCCc-EEEEcCCCCChHHHHH
Q 007415 5 RILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS-ELLDEFMNYVEGRSEIPIP-TYFIGDYGVGAAKVLL 82 (604)
Q Consensus 5 KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~-~~~~~~~~~l~g~~~~p~p-tyfv~GNh~~~~~~l~ 82 (604)
||++++|+||++. .+ ...+.|+||++||++.... ...+.+.+++. +.+.+ +++|.||||..
T Consensus 1 ~i~~isD~H~~~~-------~~--~~~~~D~vi~~GD~~~~~~~~~~~~~~~~l~---~~~~~~~~~v~GNHD~~----- 63 (135)
T cd07379 1 RFVCISDTHSRHR-------TI--SIPDGDVLIHAGDLTERGTLEELQKFLDWLK---SLPHPHKIVIAGNHDLT----- 63 (135)
T ss_pred CEEEEeCCCCCCC-------cC--cCCCCCEEEECCCCCCCCCHHHHHHHHHHHH---hCCCCeEEEEECCCCCc-----
Confidence 6999999999976 11 1235899999999975432 22233555553 34444 58899999731
Q ss_pred HHhccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcCCCCccEEEeCC
Q 007415 83 AASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNE 162 (604)
Q Consensus 83 ~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l~~~~~~vDILLTh~ 162 (604)
. . ..+.+|||||.
T Consensus 64 ------------~-~------------------------------------------------------~~~~~ilv~H~ 76 (135)
T cd07379 64 ------------L-D------------------------------------------------------PEDTDILVTHG 76 (135)
T ss_pred ------------C-C------------------------------------------------------CCCCEEEEECC
Confidence 0 0 03579999999
Q ss_pred CCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcccccccccCCCcceeEEEEcC
Q 007415 163 WPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLA 231 (604)
Q Consensus 163 wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~ 231 (604)
+|.++.+.... ....|+..+.++++..+|+|+|+||.|..+... .+ .+....|.+||.|
T Consensus 77 ~p~~~~~~~~~--------~~~~g~~~~~~~~~~~~~~~~i~GH~H~~~~~~-~~-~~~~~~t~~in~~ 135 (135)
T cd07379 77 PPYGHLDLVSS--------GQRVGCEELLNRVQRVRPKLHVFGHIHEGYGAE-RV-LDTDGETLFVNAS 135 (135)
T ss_pred CCCcCcccccc--------CcccCCHHHHHHHHHHCCcEEEEcCcCCcCcee-Ee-cccCCCEEEEeCC
Confidence 99987543221 136899999999999999999999988765322 22 2245689999875
No 22
>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups.
Probab=99.34 E-value=3.6e-12 Score=107.73 Aligned_cols=80 Identities=18% Similarity=0.177 Sum_probs=65.2
Q ss_pred EEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHh----cCCceEEEe-e-ccCCCCee
Q 007415 406 VSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN----QGKEAVFFE-W-LSKRGTHA 479 (604)
Q Consensus 406 vs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~----~g~~~v~~E-~-~~~~~~H~ 479 (604)
|++++++++++|..|..+||+||||++|+.++.+++++++.++....+.+.+.+++ .+++++++. . +++...|+
T Consensus 1 ~~e~~~~~a~~~~~p~~~gh~lIipk~H~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~n~g~~~g~~v~H~ 80 (86)
T cd00468 1 VPDDEHSFAFVNLKPAAPGHVLVCPKRHVETLPDLDEALLADLVITAQRVAAELEKHGNVPSLTVFVNDGAAAGQSVPHV 80 (86)
T ss_pred CeecCcEEEEECCCCCCCCcEEEeCchhhCChhHCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCccCCCcCCEE
Confidence 46899999999999999999999999999999999999999999888777766643 344444443 2 23346899
Q ss_pred EEEEEe
Q 007415 480 NLQAVP 485 (604)
Q Consensus 480 HihvvP 485 (604)
|+|+||
T Consensus 81 H~hiiP 86 (86)
T cd00468 81 HLHVLP 86 (86)
T ss_pred EEEeCC
Confidence 999998
No 23
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=99.25 E-value=9.7e-11 Score=118.46 Aligned_cols=200 Identities=13% Similarity=0.044 Sum_probs=110.5
Q ss_pred EEEEEcCCCCCHHH-----HHHH-HHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChH
Q 007415 5 RILLCGDVLGRLNQ-----LFKR-VQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAA 78 (604)
Q Consensus 5 KILv~GDvhG~~~~-----l~~k-v~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~ 78 (604)
||++++|+|.++.. .+++ ++.+++ . ++|+||++||++....... .+.+.+.. ..++|+|+|+||||...
T Consensus 1 ki~~iSDlH~~~~~~~~~~~l~~~~~~~~~-~-~~d~vv~~GDl~~~~~~~~-~~~~~l~~--~~~~pv~~v~GNHD~~~ 75 (239)
T TIGR03729 1 KIAFSSDLHIDLNHFDTEEMLETLAQYLKK-Q-KIDHLHIAGDISNDFQRSL-PFIEKLQE--LKGIKVTFNAGNHDMLK 75 (239)
T ss_pred CEEEEEeecCCCCCCCHHHHHHHHHHHHHh-c-CCCEEEECCccccchhhHH-HHHHHHHH--hcCCcEEEECCCCCCCC
Confidence 69999999975321 1222 233332 3 4899999999986432211 22222211 14589999999998521
Q ss_pred H-HHHHHhccccccCcccCCceecCCEEEcCCCCeE-EEcCcEEEEEecccCCCC--------------------CCCCC
Q 007415 79 K-VLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNF-TLHGLSVAYLSGRQSSEG--------------------QQFGT 136 (604)
Q Consensus 79 ~-~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~-~~~GlrIa~lgG~~~~~~--------------------~~~~~ 136 (604)
. ....+.. . .+..+|.+..+. ..++++|.|+.|-...+. .....
T Consensus 76 ~~~~~~~~~----------~----~~~~~l~~~~~~~~~~~~~~ig~~gw~d~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 141 (239)
T TIGR03729 76 DLTYEEIES----------N----DSPLYLHNRFIDIPNTQWRIIGNNGWYDYSFSNDKTSKEILRWKKSFWFDRRIKRP 141 (239)
T ss_pred CCCHHHHHh----------c----cchhhhcccccccCCCceEEEeeccceecccccccCHHHHHHhhhcEEeecccCCC
Confidence 1 1121210 0 034455543332 237889999997433210 00111
Q ss_pred -----CCHHHHHHHHH-hhcCCCCccEEEeCCCCcccccc--ccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCC
Q 007415 137 -----YSQDDVDALRA-LAEEPGIVDLFLTNEWPSGVTNK--AAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKG 208 (604)
Q Consensus 137 -----~te~d~~~L~~-l~~~~~~vDILLTh~wP~gi~~~--~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~ 208 (604)
+.+++++.|.+ +++...+--||+||-+|...... .+.. .-... ....||..+.+++++.+|++|||||.|
T Consensus 142 ~~~~~~~~~~l~~l~~~l~~~~~~~~ivvtH~pP~~~~~~~~~~~~-~~~~~-~~~~~s~~l~~li~~~~v~~~i~GH~H 219 (239)
T TIGR03729 142 MSDPERTAIVLKQLKKQLNQLDNKQVIFVTHFVPHRDFIYVPMDHR-RFDMF-NAFLGSQHFGQLLVKYEIKDVIFGHLH 219 (239)
T ss_pred CChHHHHHHHHHHHHHHHHhcCCCCEEEEEcccchHHHhcCCCCCc-chhhh-hhccChHHHHHHHHHhCCCEEEECCcc
Confidence 12333344443 22233456899999999653210 0000 00000 125789999999999999999999987
Q ss_pred CcccccccccCCCcceeEEEEcC
Q 007415 209 VFYAREPYSNVDAVHVTRFLGLA 231 (604)
Q Consensus 209 ~fyEr~Py~~~~~~~~TRFI~L~ 231 (604)
..+... ..+.||+++-.
T Consensus 220 ~~~~~~------~i~~~~~~~~~ 236 (239)
T TIGR03729 220 RRFGPL------TIGGTTYHNRP 236 (239)
T ss_pred CCCCCE------EECCEEEEecC
Confidence 654311 23579998743
No 24
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=99.20 E-value=7.7e-10 Score=111.37 Aligned_cols=197 Identities=16% Similarity=0.116 Sum_probs=119.9
Q ss_pred EEEEEcCCCCC------------HHHHHHHHHHHHhhcCCCcEEEEecCCCCCCh-hhHHHHHHHhcccCCCCCcEEEEc
Q 007415 5 RILLCGDVLGR------------LNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS-ELLDEFMNYVEGRSEIPIPTYFIG 71 (604)
Q Consensus 5 KILv~GDvhG~------------~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~-~~~~~~~~~l~g~~~~p~ptyfv~ 71 (604)
||++++|+|=. ...+-+.++.+++...++|+||++||+..... ..-+.+.+.+ .+.++|+|+|+
T Consensus 1 r~~~iSDlH~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l---~~~~~p~~~v~ 77 (240)
T cd07402 1 LLAQISDLHLRADGEGALLGVDTAASLEAVLAHINALHPRPDLVLVTGDLTDDGSPESYERLRELL---AALPIPVYLLP 77 (240)
T ss_pred CEEEEeCCccCCCCcceecCcCHHHHHHHHHHHHHhcCCCCCEEEECccCCCCCCHHHHHHHHHHH---hhcCCCEEEeC
Confidence 68999999943 12233334444444346899999999976532 2222344444 44589999999
Q ss_pred CCCCChHHHHHHHhccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHhh-c
Q 007415 72 DYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALA-E 150 (604)
Q Consensus 72 GNh~~~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l~-~ 150 (604)
||||....+...+.. ... .+ .+. .-.+.++|++|.+|....... ....++++.+.-|.+.. .
T Consensus 78 GNHD~~~~~~~~~~~---------~~~---~~-~~~--~~~~~~~~~~~i~lds~~~~~--~~~~~~~~ql~wL~~~L~~ 140 (240)
T cd07402 78 GNHDDRAAMRAVFPE---------LPP---AP-GFV--QYVVDLGGWRLILLDSSVPGQ--HGGELCAAQLDWLEAALAE 140 (240)
T ss_pred CCCCCHHHHHHhhcc---------ccc---cc-ccc--ceeEecCCEEEEEEeCCCCCC--cCCEECHHHHHHHHHHHHh
Confidence 999974333332220 000 00 001 124567899999997654321 22345677776666532 2
Q ss_pred CCCCccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHh-CCCEEEEccCCCcccccccccCCCcceeEEEE
Q 007415 151 EPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEI-KPRYHIAGSKGVFYAREPYSNVDAVHVTRFLG 229 (604)
Q Consensus 151 ~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~l-kPrYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~ 229 (604)
.....-|+++|.+|........ .. .....+..+.+++.+. +++++|+||.|..+.+ ....+++++
T Consensus 141 ~~~~~~il~~H~pp~~~~~~~~-----~~--~~~~~~~~~~~~l~~~~~v~~v~~GH~H~~~~~-------~~~g~~~~~ 206 (240)
T cd07402 141 APDKPTLVFLHHPPFPVGIAWM-----DA--IGLRNAEALAAVLARHPNVRAILCGHVHRPIDG-------SWGGIPLLT 206 (240)
T ss_pred CCCCCEEEEECCCCccCCchhh-----hh--hhCCCHHHHHHHHhcCCCeeEEEECCcCchHHe-------EECCEEEEE
Confidence 2345679999999987632100 00 0234678888999998 8999999998875322 123578888
Q ss_pred cCCCCC
Q 007415 230 LAPVGN 235 (604)
Q Consensus 230 L~~~gn 235 (604)
.|..+.
T Consensus 207 ~gs~~~ 212 (240)
T cd07402 207 APSTCH 212 (240)
T ss_pred cCccee
Confidence 887764
No 25
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=99.17 E-value=1.2e-10 Score=107.41 Aligned_cols=193 Identities=12% Similarity=0.090 Sum_probs=98.2
Q ss_pred CEEEEEcCCCCCHHHH---HHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHH--hcccCCCCCcEEEEcCCCCChH
Q 007415 4 PRILLCGDVLGRLNQL---FKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNY--VEGRSEIPIPTYFIGDYGVGAA 78 (604)
Q Consensus 4 ~KILv~GDvhG~~~~l---~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~--l~g~~~~p~ptyfv~GNh~~~~ 78 (604)
|||+++||+|+..... ...+.....+. +.|+||++||++............. .......++|+|++.||||...
T Consensus 1 ~ri~~isD~H~~~~~~~~~~~~~~~~~~~~-~~d~ii~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD~~~ 79 (200)
T PF00149_consen 1 MRILVISDLHGGYDDDSDAFRKLDEIAAEN-KPDFIIFLGDLVDGGNPSEEWRAQFWFFIRLLNPKIPVYFILGNHDYYS 79 (200)
T ss_dssp EEEEEEEBBTTTHHHHCHHHHHHHHHHHHT-TTSEEEEESTSSSSSSHHHHHHHHHHHHHHHHHTTTTEEEEE-TTSSHH
T ss_pred CeEEEEcCCCCCCcchhHHHHHHHHHhccC-CCCEEEeeccccccccccccchhhhccchhhhhccccccccccccccce
Confidence 6999999999998877 45555544444 5899999999977644322222111 1222457799999999999764
Q ss_pred HHHHHHhccccccCcccCCceecCCEEEcCCCC-eEEEcCcEEEEEecccCCCCCCCCCCCHHHHHH-HHHhhcCCCCcc
Q 007415 79 KVLLAASKNSANQGFKMDGFKVTDNLFWLKGSG-NFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDA-LRALAEEPGIVD 156 (604)
Q Consensus 79 ~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~g-v~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~-L~~l~~~~~~vD 156 (604)
........... ........+..+....+ ..................... .......... ...+........
T Consensus 80 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 152 (200)
T PF00149_consen 80 GNSFYGFYDYQ-----FEDYYGNYNYYYSYFNNKVIFDNDNFWFNSGNNEYPDYG--MEAQQEWWLWLLLLLEAKNDDPV 152 (200)
T ss_dssp HHHHHHHHHHH-----HSSEEECSSEEECTESSEEEEEETTEEEEEHCCHTHHSE--HHHHHHHHHHHHHHHHEEEESEE
T ss_pred ecccccccccc-----ccccccccccccccCcceeeecccccccccccccccccc--cccchhcccccccccccccccce
Confidence 32221110000 00000111111111001 000111111111110000000 0000011111 111222335688
Q ss_pred EEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCc
Q 007415 157 LFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVF 210 (604)
Q Consensus 157 ILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~f 210 (604)
|+++|.+|......... . .....+...+..+.+..++.++|+||.|.|
T Consensus 153 iv~~H~p~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~v~~~~~GH~H~~ 200 (200)
T PF00149_consen 153 IVFTHHPPYSSSSDSSS---Y---GNESKGREALEELLKKYNVDLVLSGHTHRY 200 (200)
T ss_dssp EEEESSSSSTTSSSTHH---H---SSEEEHHHHHHHHHHHTTCSEEEEESSSSE
T ss_pred eEEEecCCCCccccccc---c---chhhccHHHHHHHHhhCCCCEEEeCceecC
Confidence 99999999987542210 0 001357788999999999999999998864
No 26
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=99.09 E-value=2e-10 Score=121.93 Aligned_cols=98 Identities=13% Similarity=0.080 Sum_probs=78.3
Q ss_pred CCCcccCCCCC-C-CcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHh-c---
Q 007415 389 KECWFCLSSPS-V-ESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN-Q--- 462 (604)
Q Consensus 389 ~~C~FC~~~~~-~-~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~-~--- 462 (604)
..|.||.+... . ....||++++++++++|..|..+||+||||++|+.++.+++++++.+|....+.+.+.+.+ .
T Consensus 194 g~clfcdIi~~E~~~~~riV~End~fvAf~p~~p~~Pgh~lIiPKrH~~~~~dl~d~e~~~La~~lk~v~~~l~~~~~~~ 273 (347)
T TIGR00209 194 KSPMLVDYVKRELADKSRTVVETEHWIAVVPYWAIWPFETLLLPKAHVLRITDLTDAQRSDLALILKKLTSKYDNLFETS 273 (347)
T ss_pred CCccHHHHHHhHhhcCCeEEEECCCEEEEeccCCCCCCeEEEeeccCCCChhhCCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 47999987643 2 2456899999999999999999999999999999999999999999999887777766543 2
Q ss_pred -CCceEEEe-eccCC---CCeeEEEEEec
Q 007415 463 -GKEAVFFE-WLSKR---GTHANLQAVPI 486 (604)
Q Consensus 463 -g~~~v~~E-~~~~~---~~H~HihvvPv 486 (604)
+++.++.. ..+.. ..|+|+|++|+
T Consensus 274 ~pYn~~~h~~p~~~~~~~~~H~HihiiPr 302 (347)
T TIGR00209 274 FPYSMGWHGAPFNGEENQHWQLHAHFYPP 302 (347)
T ss_pred CCcceeEEecccCCCCCcEEEEEEEEeCC
Confidence 46666665 22222 25799999997
No 27
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Probab=99.09 E-value=2.4e-10 Score=121.20 Aligned_cols=98 Identities=13% Similarity=0.053 Sum_probs=77.9
Q ss_pred CCCcccCCCCC-CC-cceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHh-----
Q 007415 389 KECWFCLSSPS-VE-SHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN----- 461 (604)
Q Consensus 389 ~~C~FC~~~~~-~~-~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~----- 461 (604)
..|.||.+... .+ ...||+.++++++++|..|..+||+||||++|+.++.+++++++.+|....+.+.+.+..
T Consensus 194 g~Clfcdii~~E~~~~~RiV~End~fvAf~p~~p~~P~h~lIiPKrH~~~~~dl~dee~~~La~~lk~v~~~l~~~~~~~ 273 (346)
T PRK11720 194 GSPLLVDYVQRELADGERIVVETEHWLAVVPYWAAWPFETLLLPKAHVLRLTDLTDAQRDDLALALKKLTSRYDNLFQCS 273 (346)
T ss_pred CCeEHHHHHHhhhhcCCeEEEECCCEEEEeccccCCCCeEEEecccCCCChhhCCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 47999987643 22 246899999999999999999999999999999999999999999999877766665543
Q ss_pred cCCceEEEe-eccC---CCCeeEEEEEec
Q 007415 462 QGKEAVFFE-WLSK---RGTHANLQAVPI 486 (604)
Q Consensus 462 ~g~~~v~~E-~~~~---~~~H~HihvvPv 486 (604)
.++++++.. -.+. ...|+|+|++|+
T Consensus 274 ~pyn~~~h~~p~~~~~~~~~H~HihiiPr 302 (346)
T PRK11720 274 FPYSMGWHGAPFNGEENDHWQLHAHFYPP 302 (346)
T ss_pred CCCceeEEecccCCCCCeeEEEEEEEeCC
Confidence 246666665 1122 247999999997
No 28
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=99.03 E-value=7.9e-09 Score=104.18 Aligned_cols=178 Identities=12% Similarity=0.092 Sum_probs=101.5
Q ss_pred EEEEcCCCCC---------HH----HHHHHHHHHHhh-cCCCcEEEEecCCCCCCh-hhHHHHHHHhcccCCCCCcEEEE
Q 007415 6 ILLCGDVLGR---------LN----QLFKRVQSVNKS-AGPFDAVLCVGQFFPDSS-ELLDEFMNYVEGRSEIPIPTYFI 70 (604)
Q Consensus 6 ILv~GDvhG~---------~~----~l~~kv~~l~~k-~GpfD~vi~~GDff~~~~-~~~~~~~~~l~g~~~~p~ptyfv 70 (604)
|.+++|.|-. +. .+.+++.+.-.+ ..+.|+||++||+..... .......++| ...+.|+|+|
T Consensus 1 ~~~~sDlHl~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~D~viiaGDl~~~~~~~~~~~~l~~l---~~l~~~v~~V 77 (232)
T cd07393 1 IFAIADLHLNLDPTKPMDVFGPEWKNHTEKIKENWDNVVAPEDIVLIPGDISWAMKLEEAKLDLAWI---DALPGTKVLL 77 (232)
T ss_pred CeEEEeeccCCCCCCCCcccCccHHHHHHHHHHHHHhcCCCCCEEEEcCCCccCCChHHHHHHHHHH---HhCCCCeEEE
Confidence 5789999955 22 333344333222 235899999999974322 1111223344 3456789999
Q ss_pred cCCCCCh----HHHHHHHhccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecc-cCCCCC-----C-----CC
Q 007415 71 GDYGVGA----AKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGR-QSSEGQ-----Q-----FG 135 (604)
Q Consensus 71 ~GNh~~~----~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~-~~~~~~-----~-----~~ 135 (604)
+||||-. ..+.+.+. ++.+++.....+.+++++|+|+.+. .+.... + ..
T Consensus 78 ~GNHD~~~~~~~~~~~~l~----------------~~~~~~~~n~~~~~~~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~ 141 (232)
T cd07393 78 KGNHDYWWGSASKLRKALE----------------ESRLALLFNNAYIDDDVAICGTRGWDNPGNPWPPINETLKVEEDE 141 (232)
T ss_pred eCCccccCCCHHHHHHHHH----------------hcCeEEeccCcEEECCEEEEEEEeeCCCCCccccccccccchhHH
Confidence 9999941 22222232 1222222245667889999988652 221110 0 00
Q ss_pred CCCHHHHHHHHH----hhcC-CCCccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCc
Q 007415 136 TYSQDDVDALRA----LAEE-PGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVF 210 (604)
Q Consensus 136 ~~te~d~~~L~~----l~~~-~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~f 210 (604)
.+..++...|.. .... ..+.-|+++|.+|.... .++..+.+++++..+.+.|+||.|.+
T Consensus 142 ~~~~~~l~~l~~~L~~~~~~~~~~~~i~~~H~p~~~~~----------------~~~~~~~~~~~~~~v~~vl~GH~H~~ 205 (232)
T cd07393 142 KIFERELERLELSLKAAKKREKEKIKIVMLHYPPANEN----------------GDDSPISKLIEEYGVDICVYGHLHGV 205 (232)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCcCCC----------------CCHHHHHHHHHHcCCCEEEECCCCCC
Confidence 112233333332 1111 12367999999986541 24456778888889999999999988
Q ss_pred cccccccc
Q 007415 211 YAREPYSN 218 (604)
Q Consensus 211 yEr~Py~~ 218 (604)
....||..
T Consensus 206 ~~~~~~~~ 213 (232)
T cd07393 206 GRDRAING 213 (232)
T ss_pred cccccccc
Confidence 77777743
No 29
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=98.99 E-value=9.6e-09 Score=97.13 Aligned_cols=63 Identities=14% Similarity=0.149 Sum_probs=43.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCC
Q 007415 4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVG 76 (604)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~ 76 (604)
|||++++|+||+...+- .+.++.+.....|.||++||+.+. ++.+++ .+...|+++|.||||.
T Consensus 1 m~i~viSD~H~~~~~~~-~~~~~~~~~~~~d~ii~~GD~~~~------~~~~~l---~~~~~~~~~V~GN~D~ 63 (158)
T TIGR00040 1 MKILVISDTHGPLRATE-LPVELFNLESNVDLVIHAGDLTSP------FVLKEF---EDLAAKVIAVRGNNDG 63 (158)
T ss_pred CEEEEEecccCCcchhH-hHHHHHhhccCCCEEEEcCCCCCH------HHHHHH---HHhCCceEEEccCCCc
Confidence 79999999999986433 333333333258999999999832 133444 2345689999999985
No 30
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=98.98 E-value=3.8e-09 Score=98.64 Aligned_cols=141 Identities=16% Similarity=0.235 Sum_probs=87.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChHHHHHH
Q 007415 4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLA 83 (604)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~~l~~ 83 (604)
|||+++||+|++.+.+-+.++.+ + ..|+||++||++.. .++.+.+.. + |+|+|.||||... +..
T Consensus 1 Mki~~~sD~H~~~~~~~~~~~~~---~-~~d~vi~~GDi~~~-----~~~~~~~~~---~--~~~~v~GNHD~~~--~~~ 64 (156)
T PF12850_consen 1 MKIAVISDLHGNLDALEAVLEYI---N-EPDFVIILGDIFDP-----EEVLELLRD---I--PVYVVRGNHDNWA--FPN 64 (156)
T ss_dssp EEEEEEE--TTTHHHHHHHHHHH---T-TESEEEEES-SCSH-----HHHHHHHHH---H--EEEEE--CCHSTH--HHS
T ss_pred CEEEEEeCCCCChhHHHHHHHHh---c-CCCEEEECCCchhH-----HHHHHHHhc---C--CEEEEeCCccccc--chh
Confidence 89999999999998755555554 2 38999999999873 335555532 2 8999999998532 111
Q ss_pred HhccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcCCCCccEEEeCCC
Q 007415 84 ASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNEW 163 (604)
Q Consensus 84 l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l~~~~~~vDILLTh~w 163 (604)
.. ..+. +...-..++ .+..|+++|--
T Consensus 65 ~~-----------~~~~------~~~~~~~~~-------------------------------------~~~~i~~~H~~ 90 (156)
T PF12850_consen 65 EN-----------DEEY------LLDALRLTI-------------------------------------DGFKILLSHGH 90 (156)
T ss_dssp EE-----------CTCS------SHSEEEEEE-------------------------------------TTEEEEEESST
T ss_pred hh-----------hccc------cccceeeee-------------------------------------cCCeEEEECCC
Confidence 00 0000 000001111 24678888887
Q ss_pred CccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcccccccccCCCcceeEEEEcCCCCCcc
Q 007415 164 PSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKE 237 (604)
Q Consensus 164 P~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~~~gn~~ 237 (604)
|..+. .+...+.+++...+++++|+||.|..+... ...+.++++|.++...
T Consensus 91 ~~~~~----------------~~~~~~~~~~~~~~~~~~~~GH~H~~~~~~-------~~~~~~~~~Gs~~~~~ 141 (156)
T PF12850_consen 91 PYDVQ----------------WDPAELREILSRENVDLVLHGHTHRPQVFK-------IGGIHVINPGSIGGPR 141 (156)
T ss_dssp SSSST----------------TTHHHHHHHHHHTTSSEEEESSSSSEEEEE-------ETTEEEEEE-GSSS-S
T ss_pred Ccccc----------------cChhhhhhhhcccCCCEEEcCCcccceEEE-------ECCEEEEECCcCCCCC
Confidence 66542 345567788889999999999988765532 3359999999998643
No 31
>KOG3379 consensus Diadenosine polyphosphate hydrolase and related proteins of the histidine triad (HIT) family [Nucleotide transport and metabolism; General function prediction only]
Probab=98.97 E-value=3.6e-09 Score=94.47 Aligned_cols=87 Identities=14% Similarity=0.190 Sum_probs=70.4
Q ss_pred CCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHhcC-C-c-eEEEe---ecc
Q 007415 400 VESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQG-K-E-AVFFE---WLS 473 (604)
Q Consensus 400 ~~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~~g-~-~-~v~~E---~~~ 473 (604)
+...-|.+...++|++.+..|+.|||+||+|++-++.+.+|+.++.++|..-.+.+.++++..- . . .|.+. .++
T Consensus 14 i~~~~VFykT~~sfafvNlkPvvpgHVLv~P~R~vpRl~dLt~~E~aDlF~t~~~v~~~lek~~~~ts~ti~iQDG~~AG 93 (150)
T KOG3379|consen 14 IPPDHVFYKTKHSFAFVNLKPVVPGHVLVSPLRVVPRLTDLTAAETADLFTTVQKVQRVLEKHYNATSLTIAIQDGPEAG 93 (150)
T ss_pred CCcceEEEeccceEEEEeccccccceEEEeccccccccccCCcHHHHHHHHHHHHHHHHHHHHhcccceEEEeccccccC
Confidence 3444588999999999999999999999999999999999999999999988877777777532 1 1 22232 355
Q ss_pred CCCCeeEEEEEec
Q 007415 474 KRGTHANLQAVPI 486 (604)
Q Consensus 474 ~~~~H~HihvvPv 486 (604)
+.++|+|+|++|+
T Consensus 94 QTVpHvHvHIlPR 106 (150)
T KOG3379|consen 94 QTVPHVHVHILPR 106 (150)
T ss_pred cccceeEEEEccc
Confidence 5579999999996
No 32
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.97 E-value=4.3e-09 Score=96.39 Aligned_cols=68 Identities=18% Similarity=0.273 Sum_probs=49.4
Q ss_pred ccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcccccccccCCCcceeEEEEcCCC
Q 007415 155 VDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPV 233 (604)
Q Consensus 155 vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~~~ 233 (604)
++||++|.||.++....+ ....|+..+.+++...+|+++++||.|..+... =++ .....|++||.+-+
T Consensus 57 ~~Ilv~H~pp~~~~~~~~---------~~~~g~~~l~~~l~~~~~~~vl~GH~H~~~~~~-~~~-~~~~~t~~~n~~~~ 124 (129)
T cd07403 57 VDILLTHAPPAGIGDGED---------FAHRGFEAFLDFIDRFRPKLFIHGHTHLNYGYQ-LRI-RRVGDTTVINAYGY 124 (129)
T ss_pred cCEEEECCCCCcCcCccc---------ccccCHHHHHHHHHHHCCcEEEEcCcCCCcCcc-ccc-cccCCEEEEeCCcE
Confidence 489999999987753211 135799999999999999999999988654321 000 13668999998754
No 33
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=98.96 E-value=3.7e-09 Score=100.66 Aligned_cols=150 Identities=9% Similarity=0.030 Sum_probs=85.6
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChHHHHHHHh
Q 007415 6 ILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLAAS 85 (604)
Q Consensus 6 ILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~~l~~l~ 85 (604)
|++++|+|+++......+.+.. ...++|+|+++||++...... .+..++ .....+.|+|+|+||||.
T Consensus 1 ~~~iSDlH~~~~~~~~~~~~~~-~~~~~d~li~~GDi~~~~~~~--~~~~~~-~~~~~~~~v~~v~GNHD~--------- 67 (166)
T cd07404 1 IQYLSDLHLEFEDNLADLLNFP-IAPDADILVLAGDIGYLTDAP--RFAPLL-LALKGFEPVIYVPGNHEF--------- 67 (166)
T ss_pred CceEccccccCccccccccccC-CCCCCCEEEECCCCCCCcchH--HHHHHH-HhhcCCccEEEeCCCcce---------
Confidence 5789999999765433221111 223589999999998653221 111111 224467899999999972
Q ss_pred ccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcCCCCccEEEeCCCCc
Q 007415 86 KNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNEWPS 165 (604)
Q Consensus 86 ~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l~~~~~~vDILLTh~wP~ 165 (604)
+ ++++|.++-.. ...++++.+ ....+...+-.|++||-+|.
T Consensus 68 --------------------~-----------~~~~G~~~w~~-----~~~~~~~~~---~~~~~d~~~~~vv~~HhpP~ 108 (166)
T cd07404 68 --------------------Y-----------VRIIGTTLWSD-----ISLFGEAAA---RMRMNDFRGKTVVVTHHAPS 108 (166)
T ss_pred --------------------E-----------EEEEeeecccc-----cCccchHHH---HhCCCCCCCCEEEEeCCCCC
Confidence 1 23333332111 112233322 22222334678999999998
Q ss_pred cccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcc
Q 007415 166 GVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFY 211 (604)
Q Consensus 166 gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fy 211 (604)
........ ..... ...++..+.++++..+++++||||.|..+
T Consensus 109 ~~~~~~~~---~~~~~-~~~~~~~l~~~~~~~~v~~~i~GH~H~~~ 150 (166)
T cd07404 109 PLSLAPQY---GDSLV-NAAFAVDLDDLILADPIDLWIHGHTHFNF 150 (166)
T ss_pred ccccCccc---cCCCc-chhhhhccHhHHhhcCCCEEEECCccccc
Confidence 75321100 00100 11455567888888999999999987653
No 34
>PLN02643 ADP-glucose phosphorylase
Probab=98.91 E-value=3.8e-09 Score=111.83 Aligned_cols=95 Identities=17% Similarity=0.206 Sum_probs=74.9
Q ss_pred CCCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHH----hcCC
Q 007415 389 KECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYK----NQGK 464 (604)
Q Consensus 389 ~~C~FC~~~~~~~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~----~~g~ 464 (604)
..|.||.+.... . ||+.++++.+++|..|..+||+||||++|+.++.+++++++.+|....+.+.+.+. ..++
T Consensus 198 g~Clfcdii~~E-~--iV~en~~f~Af~p~ap~~P~evlIiPKrH~~~~~dl~~~e~~~La~ilk~v~~~l~~~~~~~py 274 (336)
T PLN02643 198 GKCSLCEVVKKD-L--LIDESSHFVSIAPFAATFPFEIWIIPRDHSSNFHEIDDDKAVDLGGLLKLMLQKISKQLNDPPY 274 (336)
T ss_pred CCCcHHHHHhCc-c--EEEeCCCEEEEeccccCCCCEEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 379999976432 2 89999999999999999999999999999999999999999999988776665543 2367
Q ss_pred ceEEEe-ec---cCCC--CeeEEEEEec
Q 007415 465 EAVFFE-WL---SKRG--THANLQAVPI 486 (604)
Q Consensus 465 ~~v~~E-~~---~~~~--~H~HihvvPv 486 (604)
++++.. -. .+.. .|+|+|++|+
T Consensus 275 N~~~~~~P~~~~~~~~~~~H~hihi~PR 302 (336)
T PLN02643 275 NYMIQTSPLGVEESNLPYTHWFLQIVPQ 302 (336)
T ss_pred eeeeecCCCccccCcccceEEEEEEecC
Confidence 777766 12 1122 4667799996
No 35
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
Probab=98.90 E-value=3e-09 Score=112.65 Aligned_cols=100 Identities=17% Similarity=0.187 Sum_probs=77.0
Q ss_pred CCCcccCCCCC-C-CcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHh-----
Q 007415 389 KECWFCLSSPS-V-ESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN----- 461 (604)
Q Consensus 389 ~~C~FC~~~~~-~-~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~----- 461 (604)
..|.||.+... . ....||+.++++.+++|-.|..|+|+||||++|+.++.+++++++.+|....+.+.+.+.+
T Consensus 184 g~clfcdii~~E~~~~~riV~end~~va~~p~~~~~P~e~lIiPKrH~~~~~dl~~~e~~~La~~l~~v~~~l~~~~~~~ 263 (329)
T cd00608 184 GRCLLCDYLKLELESKERIVVENEHFVAVVPFWARWPFEVHILPKRHVSRFTDLTDEEREDLAEILKRLLARYDNLFNCS 263 (329)
T ss_pred CCccHHHHHHhhhhcCCeEEEeCCCEEEEEecCCCCCcEEEEecCCCcCChhHCCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 47999987532 2 2356899999999999999999999999999999999999999999999887777655442
Q ss_pred cCCceEEEe-eccC-----CCCeeEEEEEecCc
Q 007415 462 QGKEAVFFE-WLSK-----RGTHANLQAVPIPT 488 (604)
Q Consensus 462 ~g~~~v~~E-~~~~-----~~~H~HihvvPvp~ 488 (604)
.++++++.. ..+. ...|+|+|++|+-.
T Consensus 264 ~pyn~~~h~~P~~~~~~~~~~~H~Hihi~Pr~~ 296 (329)
T cd00608 264 FPYSMGWHQAPTGGKELENWYYHWHFEIPPRRS 296 (329)
T ss_pred CCeEEEEeccCCCCCcCCcceEEEEEEeCCCcC
Confidence 345666654 1221 24699999988643
No 36
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=98.89 E-value=1.1e-07 Score=98.21 Aligned_cols=179 Identities=16% Similarity=0.215 Sum_probs=98.2
Q ss_pred CCCEEEEEcCCC-CC-----------HHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEE
Q 007415 2 SPPRILLCGDVL-GR-----------LNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYF 69 (604)
Q Consensus 2 ~~~KILv~GDvh-G~-----------~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyf 69 (604)
.+|||+.++|+| .. .+.+-+.++.+++...+.|+||++||+....+. +++..++....++++|+|+
T Consensus 13 ~~~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~~D~vvitGDl~~~~~~--~~~~~~~~~l~~l~~Pv~~ 90 (275)
T PRK11148 13 ARVRILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAQQHEFDLIVATGDLAQDHSS--EAYQHFAEGIAPLRKPCVW 90 (275)
T ss_pred CCEEEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHhhCCCCCEEEECCCCCCCCCH--HHHHHHHHHHhhcCCcEEE
Confidence 358999999999 11 122333344454443358999999999765321 2233333333567899999
Q ss_pred EcCCCCChHHHHHHHhccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHhh
Q 007415 70 IGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALA 149 (604)
Q Consensus 70 v~GNh~~~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l~ 149 (604)
++||||....+.+.+... + +.++ ..++..++.++..|..... ......+.+++++-|.+..
T Consensus 91 v~GNHD~~~~~~~~~~~~---------~--~~~~------~~~~~~~~~~~i~Lds~~~--g~~~G~l~~~ql~wL~~~L 151 (275)
T PRK11148 91 LPGNHDFQPAMYSALQDA---------G--ISPA------KHVLIGEHWQILLLDSQVF--GVPHGELSEYQLEWLERKL 151 (275)
T ss_pred eCCCCCChHHHHHHHhhc---------C--CCcc------ceEEecCCEEEEEecCCCC--CCcCCEeCHHHHHHHHHHH
Confidence 999999744444433210 0 1111 0111223456666654321 1112456777777666532
Q ss_pred -cCCCCccEEEeCCCC--ccccccccccccccCcCCCCCCcHHHHHHHHHh-CCCEEEEccCCCc
Q 007415 150 -EEPGIVDLFLTNEWP--SGVTNKAAASDMLVGISDSSNTDSTVSELVAEI-KPRYHIAGSKGVF 210 (604)
Q Consensus 150 -~~~~~vDILLTh~wP--~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~l-kPrYhf~Gh~~~f 210 (604)
......-|++.|..| .+..- .+ . .....+..+.+++++. +.+.+||||.|..
T Consensus 152 ~~~~~~~~vv~~hH~P~~~~~~~-~d------~--~~l~n~~~l~~ll~~~~~v~~vl~GH~H~~ 207 (275)
T PRK11148 152 ADAPERHTLVLLHHHPLPAGCAW-LD------Q--HSLRNAHELAEVLAKFPNVKAILCGHIHQE 207 (275)
T ss_pred hhCCCCCeEEEEcCCCCCCCcch-hh------c--cCCCCHHHHHHHHhcCCCceEEEecccChH
Confidence 222222344454444 33211 01 0 0134667888999887 7899999998864
No 37
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=98.85 E-value=6.5e-08 Score=90.85 Aligned_cols=133 Identities=17% Similarity=0.156 Sum_probs=82.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChHHHHHHH
Q 007415 5 RILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLAA 84 (604)
Q Consensus 5 KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~~l~~l 84 (604)
||++++|+||+.+.+...++.+. ..|.||++||+....... . .....|+++|.||||... .
T Consensus 1 ~i~~isD~H~~~~~~~~~~~~~~----~~d~ii~~GD~~~~~~~~-----~-----~~~~~~~~~V~GNhD~~~-~---- 61 (155)
T cd00841 1 KIGVISDTHGSLELLEKALELFG----DVDLIIHAGDVLYPGPLN-----E-----LELKAPVIAVRGNCDGEV-D---- 61 (155)
T ss_pred CEEEEecCCCCHHHHHHHHHHhc----CCCEEEECCccccccccc-----h-----hhcCCcEEEEeCCCCCcC-C----
Confidence 69999999999865544444332 279999999986643211 0 234578999999998420 0
Q ss_pred hccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcCCCCccEEEeCCCC
Q 007415 85 SKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNEWP 164 (604)
Q Consensus 85 ~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l~~~~~~vDILLTh~wP 164 (604)
+..+....+++++| .-|+++|-++
T Consensus 62 -------------------~~~~p~~~~~~~~g-------------------------------------~~i~v~Hg~~ 85 (155)
T cd00841 62 -------------------FPILPEEAVLEIGG-------------------------------------KRIFLTHGHL 85 (155)
T ss_pred -------------------cccCCceEEEEECC-------------------------------------EEEEEECCcc
Confidence 00011011222333 4567777776
Q ss_pred ccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcccccccccCCCcceeEEEEcCCCCCc
Q 007415 165 SGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNK 236 (604)
Q Consensus 165 ~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~~~gn~ 236 (604)
...... ... .+++......|+++||.|..+.+. ...+++||.|.++.+
T Consensus 86 ~~~~~~----------------~~~-~~~~~~~~~d~vi~GHtH~~~~~~-------~~~~~~inpGs~~~~ 133 (155)
T cd00841 86 YGVKNG----------------LDR-LYLAKEGGADVVLYGHTHIPVIEK-------IGGVLLLNPGSLSLP 133 (155)
T ss_pred cccccc----------------hhh-hhhhhhcCCCEEEECcccCCccEE-------ECCEEEEeCCCccCc
Confidence 554210 011 455667788999999988764421 235899999999865
No 38
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=98.83 E-value=3.8e-08 Score=87.68 Aligned_cols=131 Identities=19% Similarity=0.242 Sum_probs=87.5
Q ss_pred EEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChHHHHHHHhc
Q 007415 7 LLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLAASK 86 (604)
Q Consensus 7 Lv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~~l~~l~~ 86 (604)
+++||+|+..............+..+.|+||++||++.............+........|++++.||||
T Consensus 1 ~~~gD~h~~~~~~~~~~~~~~~~~~~~~~vi~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD----------- 69 (131)
T cd00838 1 AVISDIHGNLEALEAVLEAALAAAEKPDFVLVLGDLVGDGPDPEEVLAAALALLLLLGIPVYVVPGNHD----------- 69 (131)
T ss_pred CeeecccCCccchHHHHHHHHhcccCCCEEEECCcccCCCCCchHHHHHHHHHhhcCCCCEEEeCCCce-----------
Confidence 579999999887766542223333467999999999776432211111112233567899999999973
Q ss_pred cccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcCCCCccEEEeCCCCcc
Q 007415 87 NSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNEWPSG 166 (604)
Q Consensus 87 ~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l~~~~~~vDILLTh~wP~g 166 (604)
|+++|.+|..
T Consensus 70 ----------------------------------------------------------------------i~~~H~~~~~ 79 (131)
T cd00838 70 ----------------------------------------------------------------------ILLTHGPPYD 79 (131)
T ss_pred ----------------------------------------------------------------------EEEeccCCCC
Confidence 8899999987
Q ss_pred ccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcccccccccCCCcceeEEEEcC
Q 007415 167 VTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLA 231 (604)
Q Consensus 167 i~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~ 231 (604)
....... ........+..++...+|.++|+||.|.++...+ ....+++|++|
T Consensus 80 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~GH~H~~~~~~~-----~~~~~~~v~~g 131 (131)
T cd00838 80 PLDELSP--------DEDPGSEALLELLEKYGVDLVLSGHTHVYERREP-----DGGGTLYINPG 131 (131)
T ss_pred Cchhhcc--------cchhhHHHHHHHHHHhCCCEEEeCCeeccccccC-----CCCceEEecCC
Confidence 6542221 0122578899999999999999999988766543 12245566543
No 39
>PF11969 DcpS_C: Scavenger mRNA decapping enzyme C-term binding; PDB: 1VLR_B 1XMM_D 1XML_B 1ST0_A 3BLA_B 3BL9_B 3BL7_B 1ST4_B 1XQU_B.
Probab=98.81 E-value=4.9e-09 Score=94.25 Aligned_cols=99 Identities=19% Similarity=0.269 Sum_probs=68.9
Q ss_pred CCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEecc-ccCCCCCCCHHHHHHHHHHHHHHHHHHHhcCC----
Q 007415 390 ECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVE-HVPNTISTSPECEKELGRFQNSLMMYYKNQGK---- 464 (604)
Q Consensus 390 ~C~FC~~~~~~~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~-H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~~g~---- 464 (604)
+|.||.+....+...|++.++.+.++-+..|.++-|+||||++ |+.|+.+|+.+-..-+.+++....++++..+.
T Consensus 1 ~cif~~i~~~~~~~~vly~d~~~v~~~D~~P~a~~H~LviPk~~~i~sl~~L~~~~~~lL~~m~~~~~~~~~~~~~~~~~ 80 (116)
T PF11969_consen 1 NCIFCIIIRGEEPERVLYEDDDFVVFKDIYPKAPVHLLVIPKDPHIRSLRDLTPEHLPLLERMREVARELLKEEYPGDLD 80 (116)
T ss_dssp HHHHHHHTTSSSGGGESEEETSEEEEE-TT-SCCEEEEEEESSSS-SSGGG--GGGHHHHHHHHHHHHHHHHHHH-TT-E
T ss_pred CccceEeEcCCCCCcEEEEeCCEEEeeCCCCCcCcEEEEEeecCCCCChHHcCHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 4999998866556668899999999999999999999999999 99999999887766666666666666554321
Q ss_pred --c-eEEEeeccCCCCeeEEEEEecCcc
Q 007415 465 --E-AVFFEWLSKRGTHANLQAVPIPTS 489 (604)
Q Consensus 465 --~-~v~~E~~~~~~~H~HihvvPvp~~ 489 (604)
. .+.|- ......|+|+|||..+..
T Consensus 81 ~~~~~~gfH-~~PS~~HLHlHvi~~~~~ 107 (116)
T PF11969_consen 81 SDDIRLGFH-YPPSVYHLHLHVISPDFD 107 (116)
T ss_dssp GGGEEEEEE-SS-SSSS-EEEEEETTS-
T ss_pred hhhhccccc-CCCCcceEEEEEccCCCc
Confidence 1 23333 333467999999997654
No 40
>PRK09453 phosphodiesterase; Provisional
Probab=98.76 E-value=1.7e-07 Score=90.87 Aligned_cols=68 Identities=7% Similarity=0.082 Sum_probs=46.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCCh-------hhHHHHHHHhcccCCCCCcEEEEcCCCCC
Q 007415 4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS-------ELLDEFMNYVEGRSEIPIPTYFIGDYGVG 76 (604)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~-------~~~~~~~~~l~g~~~~p~ptyfv~GNh~~ 76 (604)
|||++++|+||++.. ++++.+..++. +.|.||++||++.... ....++.+.+ .+.+.++++|.||||.
T Consensus 1 mri~viSD~Hg~~~~-~~~~l~~~~~~-~~d~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l---~~~~~~v~~V~GNhD~ 75 (182)
T PRK09453 1 MKLMFASDTHGSLPA-TEKALELFAQS-GADWLVHLGDVLYHGPRNPLPEGYAPKKVAELL---NAYADKIIAVRGNCDS 75 (182)
T ss_pred CeEEEEEeccCCHHH-HHHHHHHHHhc-CCCEEEEcccccccCcCCCCccccCHHHHHHHH---HhcCCceEEEccCCcc
Confidence 799999999999865 44444443334 4799999999975311 0123344554 3445689999999984
No 41
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=98.75 E-value=2.2e-07 Score=92.45 Aligned_cols=162 Identities=16% Similarity=0.165 Sum_probs=90.9
Q ss_pred CCEEEEEcCCCCCHH----HHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChH
Q 007415 3 PPRILLCGDVLGRLN----QLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAA 78 (604)
Q Consensus 3 ~~KILv~GDvhG~~~----~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~ 78 (604)
.|||++++|+|.... .+-+.++.+. +. ..|+||++||++.........+.+++.. ...+.|+|++.||||...
T Consensus 1 ~~~i~~~sDlH~~~~~~~~~~~~~~~~~~-~~-~~d~vl~~GD~~~~~~~~~~~~~~~l~~-l~~~~~v~~v~GNHD~~~ 77 (223)
T cd07385 1 GLRIAHLSDLHLGPFVSRERLERLVEKIN-AL-KPDLVVLTGDLVDGSVDVLELLLELLKK-LKAPLGVYAVLGNHDYYS 77 (223)
T ss_pred CCEEEEEeecCCCccCCHHHHHHHHHHHh-cc-CCCEEEEcCcccCCcchhhHHHHHHHhc-cCCCCCEEEECCCccccc
Confidence 389999999998643 2222233333 23 4799999999987543322345566643 235689999999999642
Q ss_pred HH----HHHHhccccccCcccCCceecCCEEEcCCCCeE-EEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcCCC
Q 007415 79 KV----LLAASKNSANQGFKMDGFKVTDNLFWLKGSGNF-TLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPG 153 (604)
Q Consensus 79 ~~----l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~-~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l~~~~~ 153 (604)
.. .+.+. ..++.+|....+. +..|.+|.-+|-...... .+.....+... ...
T Consensus 78 ~~~~~~~~~l~---------------~~~v~~L~~~~~~~~~~~~~i~i~G~~~~~~~------~~~~~~~~~~~--~~~ 134 (223)
T cd07385 78 GDEENWIEALE---------------SAGITVLRNESVEISVGGATIGIAGVDDGLGR------RPDLEKALKGL--DED 134 (223)
T ss_pred CchHHHHHHHH---------------HcCCEEeecCcEEeccCCeEEEEEeccCcccc------CCCHHHHHhCC--CCC
Confidence 21 12221 1356666654432 456777766662211100 01111122221 235
Q ss_pred CccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcccccc
Q 007415 154 IVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREP 215 (604)
Q Consensus 154 ~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fyEr~P 215 (604)
.+.|+|+|. |..+.. +.....-|.++||.|.+==+.|
T Consensus 135 ~~~I~l~H~-P~~~~~------------------------~~~~~~dl~l~GHtHggqi~~~ 171 (223)
T cd07385 135 DPNILLAHQ-PDTAEE------------------------AAAWGVDLQLSGHTHGGQIRLP 171 (223)
T ss_pred CCEEEEecC-CChhHH------------------------hcccCccEEEeccCCCCEEecc
Confidence 689999997 332211 0344677999999886533443
No 42
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.71 E-value=5.4e-07 Score=92.75 Aligned_cols=195 Identities=17% Similarity=0.124 Sum_probs=103.4
Q ss_pred EEEEEcCCC--CC-----------HHHHHHHHHHHHhhcCCCcEEEEecCCCCCCh----hhHHHHHHHhcccCCCCCcE
Q 007415 5 RILLCGDVL--GR-----------LNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS----ELLDEFMNYVEGRSEIPIPT 67 (604)
Q Consensus 5 KILv~GDvh--G~-----------~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~----~~~~~~~~~l~g~~~~p~pt 67 (604)
||++++|+| .+ .+.+-+.++.+++. ++|+||++||+..... ...+.+.+.+ ..+++|+
T Consensus 2 r~~~iSD~H~~~~~~~~~~~~~~~~~~l~~~i~~i~~~--~~d~vv~~GDlv~~~~~~~~~~~~~~~~~l---~~l~~p~ 76 (267)
T cd07396 2 RFGIIADIQYADEDDTRPRYYRNSLEKLEEAVEEWNRE--SLDFVVQLGDIIDGDNARAEEALDAVLAIL---DRLKGPV 76 (267)
T ss_pred eEEEEeccccccCCCcccchHHHhHHHHHHHHHHHHcC--CCCEEEECCCeecCCCchHHHHHHHHHHHH---HhcCCCE
Confidence 799999999 21 23333445555543 3899999999965432 2222334444 4567999
Q ss_pred EEEcCCCCChHHHHHHHhccccccCcccCCceecCCEEEcCC-CCeEEEcCcEEEEEecccCCCC----C----------
Q 007415 68 YFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKG-SGNFTLHGLSVAYLSGRQSSEG----Q---------- 132 (604)
Q Consensus 68 yfv~GNh~~~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~-~gv~~~~GlrIa~lgG~~~~~~----~---------- 132 (604)
|+++||||........... . .....+. .-.++.+|.++.+|-+...... .
T Consensus 77 ~~v~GNHD~~~~~~~~~~~--------------~-~~~~~~~~yysf~~~~~~~i~lds~~~~~~~~~~~~~~~~~~~~~ 141 (267)
T cd07396 77 HHVLGNHDLYNPSREYLLL--------------Y-TLLGLGAPYYSFSPGGIRFIVLDGYDISALGRPEDTPKAENADDN 141 (267)
T ss_pred EEecCccccccccHhhhhc--------------c-cccCCCCceEEEecCCcEEEEEeCCccccccCCCCChhhhhHHHh
Confidence 9999999853211111100 0 0000110 0122346778888876421100 0
Q ss_pred --------------CCCCCCHHHHHHHHHh-hcC--CCCccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHH
Q 007415 133 --------------QFGTYSQDDVDALRAL-AEE--PGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVA 195 (604)
Q Consensus 133 --------------~~~~~te~d~~~L~~l-~~~--~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~ 195 (604)
....++++++.-|.+. +.. ....=|+++|.+|..... .. .. .......+.++++
T Consensus 142 ~~~~~~~~~~~~~~~~G~l~~~Ql~WL~~~L~~~~~~~~~viV~~Hhp~~~~~~-~~-----~~---~~~~~~~~~~ll~ 212 (267)
T cd07396 142 SNLGLYLSEPRFVDWNGGIGEEQLQWLRNELQEADANGEKVIIFSHFPLHPEST-SP-----HG---LLWNHEEVLSILR 212 (267)
T ss_pred chhhhhccCccceeccCcCCHHHHHHHHHHHHHHHhcCCeEEEEEeccCCCCCC-Cc-----cc---cccCHHHHHHHHH
Confidence 0124456666655542 211 112238999998754321 11 00 1223466778887
Q ss_pred Hh-CCCEEEEccCCCcccccccccCCCcceeEEEEcCCCCC
Q 007415 196 EI-KPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGN 235 (604)
Q Consensus 196 ~l-kPrYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~~~gn 235 (604)
.. +.+++|+||.|...... ...+.++..+....
T Consensus 213 ~~~~V~~v~~GH~H~~~~~~-------~~gi~~~~~~a~~~ 246 (267)
T cd07396 213 AYGCVKACISGHDHEGGYAQ-------RHGIHFLTLEGMVE 246 (267)
T ss_pred hCCCEEEEEcCCcCCCCccc-------cCCeeEEEechhhc
Confidence 74 67899999988764322 22355555555443
No 43
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=98.60 E-value=8.7e-07 Score=82.06 Aligned_cols=116 Identities=16% Similarity=0.097 Sum_probs=76.3
Q ss_pred EEEEcCCCCCHH--HH-H------HHHHHHHhhcCCCcEEEEecCCCCCChh-hHHHHHHHhcccCCCCCcEEEEcCCCC
Q 007415 6 ILLCGDVLGRLN--QL-F------KRVQSVNKSAGPFDAVLCVGQFFPDSSE-LLDEFMNYVEGRSEIPIPTYFIGDYGV 75 (604)
Q Consensus 6 ILv~GDvhG~~~--~l-~------~kv~~l~~k~GpfD~vi~~GDff~~~~~-~~~~~~~~l~g~~~~p~ptyfv~GNh~ 75 (604)
||.++|+|=... .. . +++..... ..++|+||++||++..... ....+.+++.......+|+++++||||
T Consensus 1 il~isD~Hl~~~~~~~~~~~~~~l~~~~~~~~-~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~GNHD 79 (144)
T cd07400 1 ILHLSDLHFGPERKPELLALLSLLDRLLAEIK-ALDPDLVVITGDLTQRGLPEEFEEAREFLDALPAPLEPVLVVPGNHD 79 (144)
T ss_pred CeEeCccCCCCCcchhHHHHHHHHHHHHHHHh-ccCCCEEEECCCCCCCCCHHHHHHHHHHHHHccccCCcEEEeCCCCe
Confidence 688999994211 11 1 11222222 2358999999999876432 223345566543433369999999985
Q ss_pred ChHHHHHHHhccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcCCCCc
Q 007415 76 GAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIV 155 (604)
Q Consensus 76 ~~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l~~~~~~v 155 (604)
.
T Consensus 80 ------------------------~------------------------------------------------------- 80 (144)
T cd07400 80 ------------------------V------------------------------------------------------- 80 (144)
T ss_pred ------------------------E-------------------------------------------------------
Confidence 1
Q ss_pred cEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcc
Q 007415 156 DLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFY 211 (604)
Q Consensus 156 DILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fy 211 (604)
|+++|.+|......... ...+...+.++++..++++++|||.|..+
T Consensus 81 -iv~~Hhp~~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~~l~GH~H~~~ 126 (144)
T cd07400 81 -IVVLHHPLVPPPGSGRE---------RLLDAGDALKLLAEAGVDLVLHGHKHVPY 126 (144)
T ss_pred -EEEecCCCCCCCccccc---------cCCCHHHHHHHHHHcCCCEEEECCCCCcC
Confidence 89999999887432111 12377889999999999999999988653
No 44
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=98.57 E-value=1e-06 Score=89.29 Aligned_cols=201 Identities=15% Similarity=0.111 Sum_probs=102.6
Q ss_pred CEEEEEcCCCCCHH------HHHHHHHHHHhhcCCCcEEEEecCCCCC----C--hhhHHHHHHHhcccCCCCCcEEEEc
Q 007415 4 PRILLCGDVLGRLN------QLFKRVQSVNKSAGPFDAVLCVGQFFPD----S--SELLDEFMNYVEGRSEIPIPTYFIG 71 (604)
Q Consensus 4 ~KILv~GDvhG~~~------~l~~kv~~l~~k~GpfD~vi~~GDff~~----~--~~~~~~~~~~l~g~~~~p~ptyfv~ 71 (604)
|||++++|+|.... .+.+.+. ......|+|+++||+|.. . .....++.+.+......++|+|++.
T Consensus 1 M~i~~iSDlHl~~~~~~~~~~~~~~l~---~~~~~~d~l~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~~~g~~v~~v~ 77 (241)
T PRK05340 1 MPTLFISDLHLSPERPAITAAFLRFLR---GEARQADALYILGDLFEAWIGDDDPSPFAREIAAALKALSDSGVPCYFMH 77 (241)
T ss_pred CcEEEEeecCCCCCChhHHHHHHHHHH---hhhccCCEEEEccceeccccccCcCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 78999999995421 2223232 222357999999999842 1 1112334445444445668999999
Q ss_pred CCCCChHHHHHHHhccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcC
Q 007415 72 DYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEE 151 (604)
Q Consensus 72 GNh~~~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l~~~ 151 (604)
||||... -..+.. ..++..|....+++++|.+|....|-.... .+.....++++..
T Consensus 78 GNHD~~~--~~~~~~--------------~~g~~~l~~~~~~~~~g~~i~l~HGd~~~~-------~d~~y~~~r~~~r- 133 (241)
T PRK05340 78 GNRDFLL--GKRFAK--------------AAGMTLLPDPSVIDLYGQRVLLLHGDTLCT-------DDKAYQRFRRKVR- 133 (241)
T ss_pred CCCchhh--hHHHHH--------------hCCCEEeCCcEEEEECCEEEEEECCccccc-------CCHHHHHHHHHHh-
Confidence 9998421 111110 123455555556678999999888864311 1111112222210
Q ss_pred CCCccEEEeCCCCccccc----c----ccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcccccccccCCCcc
Q 007415 152 PGIVDLFLTNEWPSGVTN----K----AAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVH 223 (604)
Q Consensus 152 ~~~vDILLTh~wP~gi~~----~----~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fyEr~Py~~~~~~~ 223 (604)
++.=+.+-+..|..... . +..........-.......+.++++...+.+.++||.|.--. ..+.. ...
T Consensus 134 -~~~~~~~~~~~p~~~~~~ia~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~GH~H~~~~-~~~~~--~~~ 209 (241)
T PRK05340 134 -NPWLQWLFLALPLSIRLRIAAKMRAKSKAANQSKSLEIMDVNPEAVAALMEKHGVDTLIHGHTHRPAI-HQLQA--GGQ 209 (241)
T ss_pred -CHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCcccccCCCHHHHHHHHHHhCCCEEEECcccCcce-eeccC--CCc
Confidence 11111112223322100 0 000000000001234456788999999999999999875311 11111 111
Q ss_pred eeEEEEcCCCCC
Q 007415 224 VTRFLGLAPVGN 235 (604)
Q Consensus 224 ~TRFI~L~~~gn 235 (604)
.-+.|+||.+..
T Consensus 210 ~~~~~~lgdw~~ 221 (241)
T PRK05340 210 PATRIVLGDWHE 221 (241)
T ss_pred ceEEEEeCCCCC
Confidence 236899999964
No 45
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=98.52 E-value=3e-06 Score=82.01 Aligned_cols=134 Identities=15% Similarity=0.166 Sum_probs=81.6
Q ss_pred EEEEEcCCC-CCHH-HHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChHHHHH
Q 007415 5 RILLCGDVL-GRLN-QLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLL 82 (604)
Q Consensus 5 KILv~GDvh-G~~~-~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~~l~ 82 (604)
.|+|++|.| |.-. .+-+.+.++.+. +.+|.||+|||+... +..+++. .+..|+++|.||||...
T Consensus 1 ~i~viSDtHl~~~~~~~~~~~~~~~~~-~~~d~iih~GDi~~~------~~~~~l~---~~~~~~~~V~GN~D~~~---- 66 (178)
T cd07394 1 LVLVIGDLHIPHRASDLPAKFKKLLVP-GKIQHVLCTGNLCSK------ETYDYLK---TIAPDVHIVRGDFDENL---- 66 (178)
T ss_pred CEEEEEecCCCCCchhhHHHHHHHhcc-CCCCEEEECCCCCCH------HHHHHHH---hhCCceEEEECCCCccc----
Confidence 389999999 5422 122233333333 458999999999752 1333432 22347899999997410
Q ss_pred HHhccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcCCCCccEEEeCC
Q 007415 83 AASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNE 162 (604)
Q Consensus 83 ~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l~~~~~~vDILLTh~ 162 (604)
. |....+++++|++| ++||-
T Consensus 67 ~-----------------------lp~~~~~~~~g~~i-------------------------------------~l~HG 86 (178)
T cd07394 67 N-----------------------YPETKVITVGQFKI-------------------------------------GLIHG 86 (178)
T ss_pred c-----------------------CCCcEEEEECCEEE-------------------------------------EEEEC
Confidence 0 11112344555444 46776
Q ss_pred CCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcccccccccCCCcceeEEEEcCCCCC
Q 007415 163 WPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGN 235 (604)
Q Consensus 163 wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~~~gn 235 (604)
++.+. ......+..+++...+.+.++||.|..+.+ ....+++||+|.++.
T Consensus 87 ~~~~~----------------~~~~~~~~~~~~~~~~dvii~GHTH~p~~~-------~~~g~~viNPGSv~~ 136 (178)
T cd07394 87 HQVVP----------------WGDPDSLAALQRQLDVDILISGHTHKFEAF-------EHEGKFFINPGSATG 136 (178)
T ss_pred CcCCC----------------CCCHHHHHHHHHhcCCCEEEECCCCcceEE-------EECCEEEEECCCCCC
Confidence 55322 112345667777788899999999864322 123599999999984
No 46
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=98.52 E-value=3.3e-06 Score=81.04 Aligned_cols=141 Identities=17% Similarity=0.119 Sum_probs=89.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChHHHHH
Q 007415 3 PPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLL 82 (604)
Q Consensus 3 ~~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~~l~ 82 (604)
.|||||++|.|+.... ..+..++.... ++|+||.+||+-.+... ..+.+. +..++|+|-||+|.... .
T Consensus 1 ~m~ilviSDtH~~~~~-~~~~~~~~~~~-~~d~vih~GD~~~~~~~------~~l~~~--~~~~i~~V~GN~D~~~~-~- 68 (172)
T COG0622 1 MMKILVISDTHGPLRA-IEKALKIFNLE-KVDAVIHAGDSTSPFTL------DALEGG--LAAKLIAVRGNCDGEVD-Q- 68 (172)
T ss_pred CcEEEEEeccCCChhh-hhHHHHHhhhc-CCCEEEECCCcCCccch------HHhhcc--cccceEEEEccCCCccc-c-
Confidence 4899999999999863 34444444444 58999999999766321 122110 45789999999985310 0
Q ss_pred HHhccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcCCCCccEEEeCC
Q 007415 83 AASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNE 162 (604)
Q Consensus 83 ~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l~~~~~~vDILLTh~ 162 (604)
.-+....+++++|+||+.+=|-
T Consensus 69 ----------------------~~~p~~~~~~~~g~ki~l~HGh------------------------------------ 90 (172)
T COG0622 69 ----------------------EELPEELVLEVGGVKIFLTHGH------------------------------------ 90 (172)
T ss_pred ----------------------ccCChhHeEEECCEEEEEECCC------------------------------------
Confidence 1122245778888888755442
Q ss_pred CCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcccccccccCCCcceeEEEEcCCCCCcc
Q 007415 163 WPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKE 237 (604)
Q Consensus 163 wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~~~gn~~ 237 (604)
=..+ ...-..+..++++...-..++||.|.... . ....+.+||+|....+.
T Consensus 91 -~~~~----------------~~~~~~l~~la~~~~~Dvli~GHTH~p~~-----~--~~~~i~~vNPGS~s~pr 141 (172)
T COG0622 91 -LYFV----------------KTDLSLLEYLAKELGADVLIFGHTHKPVA-----E--KVGGILLVNPGSVSGPR 141 (172)
T ss_pred -cccc----------------ccCHHHHHHHHHhcCCCEEEECCCCcccE-----E--EECCEEEEcCCCcCCCC
Confidence 2211 01222455666666777888999886422 2 23358999999986543
No 47
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=98.50 E-value=1.2e-06 Score=91.07 Aligned_cols=215 Identities=16% Similarity=0.122 Sum_probs=112.4
Q ss_pred CCEEEEEcCCCC---CHHHHHHHHHHHHhhcCCCcEEEEecCCCCCC-h---hhHHHHHHHhcccCCCCCcEEEEcCCCC
Q 007415 3 PPRILLCGDVLG---RLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDS-S---ELLDEFMNYVEGRSEIPIPTYFIGDYGV 75 (604)
Q Consensus 3 ~~KILv~GDvhG---~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~-~---~~~~~~~~~l~g~~~~p~ptyfv~GNh~ 75 (604)
+.+++|+||.+. ....+++++ .+...++|+||.+||+.-.. . ..-+.+.+.+... ...+|+++++||||
T Consensus 4 ~~~f~v~gD~~~~~~~~~~~~~~l---~~~~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~~~~-~~~~P~~~~~GNHD 79 (294)
T cd00839 4 PFKFAVFGDMGQNTNNSTNTLDHL---EKELGNYDAILHVGDLAYADGYNNGSRWDTFMRQIEPL-ASYVPYMVTPGNHE 79 (294)
T ss_pred cEEEEEEEECCCCCCCcHHHHHHH---HhccCCccEEEEcCchhhhcCCccchhHHHHHHHHHHH-HhcCCcEEcCcccc
Confidence 468999999995 334444444 33233689999999995321 1 1112233333221 23589999999999
Q ss_pred ChHHHHHHHhccccc-cCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHH-hhcC--
Q 007415 76 GAAKVLLAASKNSAN-QGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRA-LAEE-- 151 (604)
Q Consensus 76 ~~~~~l~~l~~~~~~-~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~-l~~~-- 151 (604)
............... ............+.+| .+.+++++|.+|....... ......++++-|.+ |+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y-----sf~~g~v~fi~Lds~~~~~---~~~~~~~q~~WL~~~L~~~~~ 151 (294)
T cd00839 80 ADYNFSFYKIKAFFPRFRFPHSPSGSTSNLWY-----SFDVGPVHFVSLSTEVDFY---GDGPGSPQYDWLEADLAKVDR 151 (294)
T ss_pred cccCCCCcccccccccccccCCCCCCCCCceE-----EEeeCCEEEEEEecccccc---cCCCCcHHHHHHHHHHHHhcc
Confidence 632110000000000 0000000000011111 2346788999886543211 11233445544443 2211
Q ss_pred -CCCccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcccccccccC---------CC
Q 007415 152 -PGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNV---------DA 221 (604)
Q Consensus 152 -~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fyEr~Py~~~---------~~ 221 (604)
..+.-|+++|.|+......... .. ........+.+|+++.+....|+||.|.|--..|.... ..
T Consensus 152 ~~~~~~iv~~H~P~~~~~~~~~~----~~--~~~~~~~~l~~ll~~~~v~~vl~GH~H~y~r~~p~~~~~~~~~~~~~~~ 225 (294)
T cd00839 152 SKTPWIIVMGHRPMYCSNTDHDD----CI--EGEKMRAALEDLFYKYGVDLVLSGHVHAYERTCPVYNGTVVGDCNPYSN 225 (294)
T ss_pred cCCCeEEEEeccCcEecCccccc----cc--hhHHHHHHHHHHHHHhCCCEEEEccceeeEeechhhCCEeccccccccC
Confidence 1245689999998754321110 00 01245567888999999999999999876445564331 12
Q ss_pred cceeEEEEcCCCCC
Q 007415 222 VHVTRFLGLAPVGN 235 (604)
Q Consensus 222 ~~~TRFI~L~~~gn 235 (604)
...|.+|--|.-|.
T Consensus 226 ~~g~~yiv~G~~G~ 239 (294)
T cd00839 226 PKGPVHIVIGAGGN 239 (294)
T ss_pred CCccEEEEECCCcc
Confidence 34677777777775
No 48
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=98.48 E-value=8.6e-06 Score=83.38 Aligned_cols=185 Identities=10% Similarity=-0.023 Sum_probs=98.7
Q ss_pred CCEEEEEcCCCCCHH---------------HHHH-HHHHHHhhcCCCcEEEEecCCCCCChhh------HHHHHHHhccc
Q 007415 3 PPRILLCGDVLGRLN---------------QLFK-RVQSVNKSAGPFDAVLCVGQFFPDSSEL------LDEFMNYVEGR 60 (604)
Q Consensus 3 ~~KILv~GDvhG~~~---------------~l~~-kv~~l~~k~GpfD~vi~~GDff~~~~~~------~~~~~~~l~g~ 60 (604)
+.++++++|+|-... .+++ .++.+++.....|+||++||+....... ...+.+.+..
T Consensus 4 ~~~f~~~sD~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~pd~ii~~GDl~~~~~~~~~~~~~~~~~~~~~~~- 82 (262)
T cd07395 4 PFYFIQGADPQLGLIKKNLEGGGDEWDEEIKLTEQAVQAINKLNPKPKFVVVCGDLVNAMPGDELRERQVSDLKDVLSL- 82 (262)
T ss_pred CEEEEEecCCccchhhccccCchhhhhhHHHHHHHHHHHHHhcCCCCCEEEEeCCcCCCCcchhhHHHHHHHHHHHHhh-
Confidence 468999999998742 1122 2333333333589999999997653211 1233444432
Q ss_pred CCCCCcEEEEcCCCCCh----HHHHHHHhccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCC
Q 007415 61 SEIPIPTYFIGDYGVGA----AKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGT 136 (604)
Q Consensus 61 ~~~p~ptyfv~GNh~~~----~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~ 136 (604)
...++|+|+++||||.. ...+..+.. ...+. .-.+..+|+++..|.............
T Consensus 83 ~~~~vp~~~i~GNHD~~~~~~~~~~~~f~~------------~~g~~------~y~~~~~~~~~i~lds~~~~~~~~~~~ 144 (262)
T cd07395 83 LDPDIPLVCVCGNHDVGNTPTEESIKDYRD------------VFGDD------YFSFWVGGVFFIVLNSQLFFDPSEVPE 144 (262)
T ss_pred ccCCCcEEEeCCCCCCCCCCChhHHHHHHH------------HhCCc------ceEEEECCEEEEEeccccccCcccccc
Confidence 23478999999999852 111111110 00011 012346788888875542211111123
Q ss_pred CCHHHHHHHHHh-hcC---CCCccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCc
Q 007415 137 YSQDDVDALRAL-AEE---PGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVF 210 (604)
Q Consensus 137 ~te~d~~~L~~l-~~~---~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~f 210 (604)
...++++-|.+. ... ....-|+++|.||......... ............+.+++++......||||.|..
T Consensus 145 ~~~~ql~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~----~~~~~~~~~~~~l~~ll~~~~V~~v~~GH~H~~ 218 (262)
T cd07395 145 LAQAQDVWLEEQLEIAKESDCKHVIVFQHIPWFLEDPDEED----SYFNIPKSVRKPLLDKFKKAGVKAVFSGHYHRN 218 (262)
T ss_pred chHHHHHHHHHHHHHHHhccCCcEEEEECcCCccCCCCCCc----ccCCcCHHHHHHHHHHHHhcCceEEEECccccC
Confidence 445556555542 211 2346799999999643211000 000000112346777888889999999998864
No 49
>KOG3947 consensus Phosphoesterases [General function prediction only]
Probab=98.45 E-value=1.8e-06 Score=86.63 Aligned_cols=203 Identities=17% Similarity=0.190 Sum_probs=112.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCC-ChhhHHHHHHHhcccCCCCCc-EEEEcCCCCChHH--
Q 007415 4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPD-SSELLDEFMNYVEGRSEIPIP-TYFIGDYGVGAAK-- 79 (604)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~-~~~~~~~~~~~l~g~~~~p~p-tyfv~GNh~~~~~-- 79 (604)
.++.+++|.|+....+ + +.-+=|.+|.+|||-.- ..++...+.+++ | ++|.- =+.|.|||++..+
T Consensus 62 ~r~VcisdtH~~~~~i-------~-~~p~gDvlihagdfT~~g~~~ev~~fn~~~-g--slph~yKIVIaGNHELtFd~e 130 (305)
T KOG3947|consen 62 ARFVCISDTHELTFDI-------N-DIPDGDVLIHAGDFTNLGLPEEVIKFNEWL-G--SLPHEYKIVIAGNHELTFDHE 130 (305)
T ss_pred eEEEEecCcccccCcc-------c-cCCCCceEEeccCCccccCHHHHHhhhHHh-c--cCcceeeEEEeeccceeeccc
Confidence 5789999999975433 2 22123999999999542 223333344444 2 22221 3578899997543
Q ss_pred HHHHHhc---cccc------cCcc-cCC-ceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHH-
Q 007415 80 VLLAASK---NSAN------QGFK-MDG-FKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRA- 147 (604)
Q Consensus 80 ~l~~l~~---~~~~------~~~~-~~g-~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~- 147 (604)
+...+-+ +... .+.+ .++ ..+--|.+||.... +++.|++|.+. ....-...|..+..- -..+..
T Consensus 131 f~~~~~k~~~~~~~~p~~s~l~P~a~egv~~lLTN~iYLqD~~-vtv~G~~Iygs--pw~p~~~g~~f~l~r-g~~~ld~ 206 (305)
T KOG3947|consen 131 FMADLIKDEQDAYYFPGVSKLKPEAYEGVQSLLTNCIYLQDSE-VTVRGVRIYGS--PWTPLLPGWAFNLPR-GQSLLDK 206 (305)
T ss_pred ccchhhccccceecCccccccCccccccccchhceeEEEecCc-EEEEEEEEecC--CCCcccCchhhhhhh-hHhhhHH
Confidence 1110100 0000 0000 111 23567889999766 57788877643 222111112222111 111111
Q ss_pred hhcCCCCccEEEeCCCCccccccccccccccCcCCCCCCcHH-HHHHHHHhCCCEEEEccCCCcccccccccCCCcceeE
Q 007415 148 LAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDST-VSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTR 226 (604)
Q Consensus 148 l~~~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~-i~~l~~~lkPrYhf~Gh~~~fyEr~Py~~~~~~~~TR 226 (604)
-.....++|||+||.+|.|..+.... -++ .+.|+.. +..+...+||+||+.||.|..|--. +.+.|+
T Consensus 207 W~~ip~~iDvL~tHtPPlG~gd~~~~---~~g---qr~GC~ell~tVe~rvqpk~hVfGhvhe~~Gvt------a~G~t~ 274 (305)
T KOG3947|consen 207 WNQIPGGIDVLITHTPPLGHGDLVPV---FSG---QRNGCVELLNTVERRVQPKYHVFGHVHEGHGVT------ADGYTT 274 (305)
T ss_pred HhcCccccceeccCCCCCCcchhccc---ccC---cccCHHHHHHhHhhccccceEEeeeeecCceee------ecCccc
Confidence 11235789999999999997654220 122 4677765 4555556999999999976653322 567899
Q ss_pred EEEcCCC
Q 007415 227 FLGLAPV 233 (604)
Q Consensus 227 FI~L~~~ 233 (604)
|||-.-+
T Consensus 275 fina~~C 281 (305)
T KOG3947|consen 275 FINAELC 281 (305)
T ss_pred cccHHHh
Confidence 9976554
No 50
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=98.41 E-value=6.3e-06 Score=84.91 Aligned_cols=206 Identities=13% Similarity=0.102 Sum_probs=109.3
Q ss_pred CEEEEEcCCCCCH----HHHHHHHHHHHhhcCCCcEEEEecCCCCCCh-------hhHHHHHHHhcccCCCCCcEEEEcC
Q 007415 4 PRILLCGDVLGRL----NQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS-------ELLDEFMNYVEGRSEIPIPTYFIGD 72 (604)
Q Consensus 4 ~KILv~GDvhG~~----~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~-------~~~~~~~~~l~g~~~~p~ptyfv~G 72 (604)
++++++||.-..- ..+.+.+.++.++. +.|+||.+||++.... ...+.+.+.+.. ....+|+|.++|
T Consensus 1 ~~f~~~gD~g~~~~~~~~~~~~~~~~~~~~~-~~dfvv~~GD~~y~~g~~~~~~~~~~~~~~~~~~~-~~~~~P~~~v~G 78 (277)
T cd07378 1 LRFLALGDWGGGGTAGQKAVAKAMAKVAAEL-GPDFILSLGDNFYDDGVGSVDDPRFETTFEDVYSA-PSLQVPWYLVLG 78 (277)
T ss_pred CeEEEEeecCCCCCHHHHHHHHHHHHHHHhc-CCCEEEeCCCccccCCCCCCcchHHHHHHHHHccc-hhhcCCeEEecC
Confidence 4689999987741 34445555555544 5899999999853211 111234444432 225789999999
Q ss_pred CCCChHHHHHHHhccccccCcccCCceecCCEEEcCCCCeEEEc------CcEEEEEecccCCC-C--------CCCCCC
Q 007415 73 YGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLH------GLSVAYLSGRQSSE-G--------QQFGTY 137 (604)
Q Consensus 73 Nh~~~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~------GlrIa~lgG~~~~~-~--------~~~~~~ 137 (604)
|||.....-..+.-... .....+..++.+| .+... +++|.+|--..... . ......
T Consensus 79 NHD~~~~~~~~~~~~~~----~~~~~~~~~~~~y-----~~~~~~~~~~~~~~~i~LDt~~~~~~~~~~~~~~~~~~~~~ 149 (277)
T cd07378 79 NHDYSGNVSAQIDYTKR----PNSPRWTMPAYYY-----RVSFPFPSSDTTVEFIMIDTVPLCGNSDDIASPYGPPNGKL 149 (277)
T ss_pred CcccCCCchheeehhcc----CCCCCccCcchhe-----EEEeecCCCCCEEEEEEEeChhHcCccccccccccCcchhh
Confidence 99864221111000000 0000111122111 12233 57777775442211 1 011223
Q ss_pred CHHHHHHHHH-hhcCCCCccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCccccccc
Q 007415 138 SQDDVDALRA-LAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPY 216 (604)
Q Consensus 138 te~d~~~L~~-l~~~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fyEr~Py 216 (604)
.+++++-|.+ |.......=|+++|.+|........ .......+.+++++.+..++|+||.|.+....
T Consensus 150 ~~~Q~~wL~~~L~~~~~~~~iv~~H~P~~~~~~~~~----------~~~~~~~l~~l~~~~~v~~vl~GH~H~~~~~~-- 217 (277)
T cd07378 150 AEEQLAWLEKTLAASTADWKIVVGHHPIYSSGEHGP----------TSCLVDRLLPLLKKYKVDAYLSGHDHNLQHIK-- 217 (277)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEeCccceeCCCCCC----------cHHHHHHHHHHHHHcCCCEEEeCCcccceeee--
Confidence 4455555554 2222334569999999875432111 01224567788888899999999988753321
Q ss_pred ccCCCcceeEEEEcCCCCC
Q 007415 217 SNVDAVHVTRFLGLAPVGN 235 (604)
Q Consensus 217 ~~~~~~~~TRFI~L~~~gn 235 (604)
. ....|++|..|.-+.
T Consensus 218 -~--~~~~~~~i~~G~~~~ 233 (277)
T cd07378 218 -D--DGSGTSFVVSGAGSK 233 (277)
T ss_pred -c--CCCCcEEEEeCCCcc
Confidence 1 124688888875543
No 51
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=98.36 E-value=1.2e-05 Score=81.12 Aligned_cols=103 Identities=17% Similarity=0.202 Sum_probs=62.4
Q ss_pred EEEEcCCCCCH------HHHHHHHHHHHhhcCCCcEEEEecCCCCC------ChhhHHHHHHHhcccCCCCCcEEEEcCC
Q 007415 6 ILLCGDVLGRL------NQLFKRVQSVNKSAGPFDAVLCVGQFFPD------SSELLDEFMNYVEGRSEIPIPTYFIGDY 73 (604)
Q Consensus 6 ILv~GDvhG~~------~~l~~kv~~l~~k~GpfD~vi~~GDff~~------~~~~~~~~~~~l~g~~~~p~ptyfv~GN 73 (604)
+++++|+|... +.+++.+..+. ...|+||++||+|.. .....+.+.+.+....+.++|+|+|.||
T Consensus 1 ~~~iSDlHl~~~~~~~~~~~l~~l~~~~---~~~d~lii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~~~~~~v~~v~GN 77 (231)
T TIGR01854 1 TLFISDLHLSPERPDITALFLDFLREEA---RKADALYILGDLFEAWIGDDDPSTLARSVAQAIRQVSDQGVPCYFMHGN 77 (231)
T ss_pred CeEEEecCCCCCChhHHHHHHHHHHhhh---ccCCEEEEcCceeccccCCCCCCHHHHHHHHHHHHHHHCCCeEEEEcCC
Confidence 47899999542 23444443322 258999999999852 1111223444444434557899999999
Q ss_pred CCChHHHHHHHhccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEeccc
Q 007415 74 GVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQ 127 (604)
Q Consensus 74 h~~~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~ 127 (604)
||.... ..+.. ..++..+....+++++|.+|..+=|-.
T Consensus 78 HD~~~~--~~~~~--------------~~gi~~l~~~~~~~~~g~~ill~HGd~ 115 (231)
T TIGR01854 78 RDFLIG--KRFAR--------------EAGMTLLPDPSVIDLYGQKVLLMHGDT 115 (231)
T ss_pred Cchhhh--HHHHH--------------HCCCEEECCCEEEEECCEEEEEEcCcc
Confidence 984211 11110 125566666566778999998887763
No 52
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=98.36 E-value=1.5e-06 Score=85.98 Aligned_cols=175 Identities=16% Similarity=0.181 Sum_probs=89.1
Q ss_pred EEEEEcCCC-CCH----------H---HHHHHHHHHHhhcCCCcEEEEecCCCCCCh---hhHHHHHHHhcccCCCCCcE
Q 007415 5 RILLCGDVL-GRL----------N---QLFKRVQSVNKSAGPFDAVLCVGQFFPDSS---ELLDEFMNYVEGRSEIPIPT 67 (604)
Q Consensus 5 KILv~GDvh-G~~----------~---~l~~kv~~l~~k~GpfD~vi~~GDff~~~~---~~~~~~~~~l~g~~~~p~pt 67 (604)
||+.++|+| |.. . .+++++.....+. .+|+||++||+|.... .....+.+++.......+|+
T Consensus 1 ~i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~i~~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 79 (223)
T cd00840 1 RFLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAIEE-KVDFVLIAGDLFDSNNPSPEALELLIEALRRLKEAGIPV 79 (223)
T ss_pred CeEEeccccCCccccCcCcccchHHHHHHHHHHHHHHHhc-CCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHCCCCE
Confidence 699999999 321 1 1233333332333 4899999999987532 22334555554322247899
Q ss_pred EEEcCCCCChHHHHHHHhccccccCcccCCceecCCEEEcC---C-CCeE--E--EcCcEEEEEecccCCCCCCCCCCCH
Q 007415 68 YFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLK---G-SGNF--T--LHGLSVAYLSGRQSSEGQQFGTYSQ 139 (604)
Q Consensus 68 yfv~GNh~~~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg---~-~gv~--~--~~GlrIa~lgG~~~~~~~~~~~~te 139 (604)
|++.||||.......... .....++..++ . .... . ..++.|.+++-.... ...
T Consensus 80 ~~~~GNHD~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~g~~~~~~~-------~~~ 140 (223)
T cd00840 80 FIIAGNHDSPSRLGALSP------------LLALSGLHLVGVEEDVLTPLLLPKGGTGVAIYGLPYLRRS-------RLR 140 (223)
T ss_pred EEecCCCCCccccccccc------------hHhhCcEEEEcccCcceeEEEeccCCeEEEEEECCCCCHH-------HHH
Confidence 999999996432111000 00112333331 0 1111 1 234555655432110 001
Q ss_pred HHHHHHHH--hhcCCCCccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcc
Q 007415 140 DDVDALRA--LAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFY 211 (604)
Q Consensus 140 ~d~~~L~~--l~~~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fy 211 (604)
+..+.+.. ........-||++|....+...... ...+.....+...+..|+++||.|...
T Consensus 141 ~~~~~~~~~~~~~~~~~~~Il~~H~~~~~~~~~~~------------~~~~~~~~~~~~~~~d~v~~GH~H~~~ 202 (223)
T cd00840 141 DLLADAELRPRPLDPDDFNILLLHGGVAGAGPSDS------------ERAPFVPEALLPAGFDYVALGHIHRPQ 202 (223)
T ss_pred HHHHHHHHHhhccCCCCcEEEEEeeeeecCCCCcc------------cccccCcHhhcCcCCCEEECCCcccCe
Confidence 11110111 1122456789999999887642110 112233344456788999999988763
No 53
>PHA03008 hypothetical protein; Provisional
Probab=98.34 E-value=1.7e-06 Score=82.22 Aligned_cols=90 Identities=18% Similarity=0.153 Sum_probs=58.2
Q ss_pred CCEEEcCCCCeEEE----cCcEEEEEecccCCC--CCC--------CCCCCH--HHHHHHHHhhcCCCCccEEEeCCCCc
Q 007415 102 DNLFWLKGSGNFTL----HGLSVAYLSGRQSSE--GQQ--------FGTYSQ--DDVDALRALAEEPGIVDLFLTNEWPS 165 (604)
Q Consensus 102 ~Nl~~Lg~~gv~~~----~GlrIa~lgG~~~~~--~~~--------~~~~te--~d~~~L~~l~~~~~~vDILLTh~wP~ 165 (604)
.|++||..+++ ++ .|++|-|-.-+ .. ++. .+.|.. ++...-.++ .. .+||||||.||.
T Consensus 99 gnIIYLeDs~V-tI~f~~rgIKIYGSP~s--P~~~F~~sai~k~~~~wAf~~~~d~~i~wwn~--IP-~tDILITHgPP~ 172 (234)
T PHA03008 99 LDIIILRDDLI-EFDFFDDIIKIYGQSHI--EDKKFKNSHIHKALEGIAHIKKNDDEINYRNH--IP-KCDILITASPPF 172 (234)
T ss_pred CCEEEEeCCcE-EEEecCCceEEECCCCC--cchhcccccccccccccccccCccccchhhcc--CC-CCCEEEeCCCCc
Confidence 58999997776 44 57777653222 22 111 123321 111111222 23 499999999999
Q ss_pred cccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCc
Q 007415 166 GVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVF 210 (604)
Q Consensus 166 gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~f 210 (604)
|+.|. .+|++.+.+-+.++|||||++||.-.|
T Consensus 173 GhLD~-------------~vGC~~Ll~~I~rVKPKyHVFGh~~~~ 204 (234)
T PHA03008 173 AILDD-------------DLACGDLFSKVIKIKPKFHIFNGLTQF 204 (234)
T ss_pred ccccc-------------ccCcHHHHHHHHHhCCcEEEeCCcccc
Confidence 99652 479999998889999999999995433
No 54
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=98.31 E-value=3.1e-06 Score=91.86 Aligned_cols=75 Identities=21% Similarity=0.305 Sum_probs=48.0
Q ss_pred CCEEEEEcCCCCCH-----------HHHHHHHHHHHhhcCCCcEEEEecCCCCCCh---hhH----HHHHHH--------
Q 007415 3 PPRILLCGDVLGRL-----------NQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS---ELL----DEFMNY-------- 56 (604)
Q Consensus 3 ~~KILv~GDvhG~~-----------~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~---~~~----~~~~~~-------- 56 (604)
.||||+++|+|-.. ...|+.+-.+..+. .+|+||++||+|.... .+. +.+.+|
T Consensus 3 ~mKIlh~SD~HlG~~~~~~~r~~D~~~~f~eil~~a~~~-~vD~VLiaGDLFd~~~Ps~~~~~~~~~~lr~~~~g~~p~~ 81 (405)
T TIGR00583 3 TIRILVSTDNHVGYGENDPVRGDDSWNTFEEVLQIAKEQ-DVDMILLGGDLFHENKPSRKSLYQVLRSLRLYCLGDKPCE 81 (405)
T ss_pred ceEEEEEcCCCCCCccCCchhhhhHHHHHHHHHHHHHHc-CCCEEEECCccCCCCCCCHHHHHHHHHHHHHhhccCCccc
Confidence 48999999999431 22445544444444 5899999999987632 111 222221
Q ss_pred ---hc------------------ccCCCCCcEEEEcCCCCChH
Q 007415 57 ---VE------------------GRSEIPIPTYFIGDYGVGAA 78 (604)
Q Consensus 57 ---l~------------------g~~~~p~ptyfv~GNh~~~~ 78 (604)
|+ ....+.+|+|.|.||||++.
T Consensus 82 ~~~Lsd~~~~~~~~~~~~~ny~d~~~~~~iPVf~I~GNHD~p~ 124 (405)
T TIGR00583 82 LEFLSDASVVFNQSAFGNVNYEDPNINVAIPVFSIHGNHDDPS 124 (405)
T ss_pred hhhccchhhhcccccccccccccccccCCCCEEEEcCCCCCcc
Confidence 11 11136899999999999875
No 55
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=98.30 E-value=3.2e-05 Score=79.24 Aligned_cols=161 Identities=11% Similarity=0.029 Sum_probs=86.5
Q ss_pred CCcEEEEecCCCCCChh-hHHHH----HHHhcccCCC--CCcEEEEcCCCCChH------HHHHHHhccccccCcccCCc
Q 007415 32 PFDAVLCVGQFFPDSSE-LLDEF----MNYVEGRSEI--PIPTYFIGDYGVGAA------KVLLAASKNSANQGFKMDGF 98 (604)
Q Consensus 32 pfD~vi~~GDff~~~~~-~~~~~----~~~l~g~~~~--p~ptyfv~GNh~~~~------~~l~~l~~~~~~~~~~~~g~ 98 (604)
+.|+||++||++..+.. ..++| ..+..-.... .+|+|.|+||||... ..+..+.
T Consensus 45 ~PD~vv~lGDL~d~G~~~~~~~~~~~~~rf~~i~~~~~~~~pv~~VpGNHDig~~~~~~~~~~~rf~------------- 111 (257)
T cd08163 45 KPDSTIFLGDLFDGGRDWADEYWKKEYNRFMRIFDPSPGRKMVESLPGNHDIGFGNGVVLPVRQRFE------------- 111 (257)
T ss_pred CCCEEEEecccccCCeeCcHHHHHHHHHHHHHHhcCCCccceEEEeCCCcccCCCCCCCHHHHHHHH-------------
Confidence 58999999999875432 11222 2222221222 379999999999521 0111111
Q ss_pred eecCCEEEcCC-CCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHh-hc-CCCCccEEEeCCCCccccccccc--
Q 007415 99 KVTDNLFWLKG-SGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRAL-AE-EPGIVDLFLTNEWPSGVTNKAAA-- 173 (604)
Q Consensus 99 ei~~Nl~~Lg~-~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l-~~-~~~~vDILLTh~wP~gi~~~~~~-- 173 (604)
.++|. ..++.++|.+|.+|-+....... ......+..+-|... .. .....=|||||.|.....+....
T Consensus 112 ------~~Fg~~~~~~~~~~~~fV~Lds~~l~~~~-~~~~~~~~~~~l~~~l~~~~~~~p~ILl~H~Plyr~~~~~cg~~ 184 (257)
T cd08163 112 ------KYFGPTSRVIDVGNHTFVILDTISLSNKD-DPDVYQPPREFLHSFSAMKVKSKPRILLTHVPLYRPPNTSCGPL 184 (257)
T ss_pred ------HHhCCCceEEEECCEEEEEEccccccCCc-ccccchhHHHHHHhhhhccCCCCcEEEEeccccccCCCCCCCCc
Confidence 01222 13456778888888776332111 122323333333332 21 12344599999997755431110
Q ss_pred --cc--ccc--CcCCC-CCCcHHHHHHHHHhCCCEEEEccCCCccc
Q 007415 174 --SD--MLV--GISDS-SNTDSTVSELVAEIKPRYHIAGSKGVFYA 212 (604)
Q Consensus 174 --~~--~~~--~~~~~-~~Gs~~i~~l~~~lkPrYhf~Gh~~~fyE 212 (604)
.. .+. +.... ....+.-.+|++++||+..|+||.|.|.+
T Consensus 185 re~~~~~~~~~g~~yq~~l~~~~s~~il~~~~P~~vfsGhdH~~C~ 230 (257)
T cd08163 185 RESKTPLPYGYGYQYQNLLEPSLSEVILKAVQPVIAFSGDDHDYCE 230 (257)
T ss_pred cccCCCCCCCCCccceeecCHHHHHHHHHhhCCcEEEecCCCccce
Confidence 00 111 11111 23445666999999999999999888877
No 56
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=98.30 E-value=1.7e-05 Score=81.84 Aligned_cols=71 Identities=17% Similarity=0.112 Sum_probs=45.1
Q ss_pred CCEEEEEcCCCCC----HHHHHHHHHHHHhhcCCCcEEEEecCCCCC-ChhhHHHHHHHhcccCCCCCcEEEEcCCCCC
Q 007415 3 PPRILLCGDVLGR----LNQLFKRVQSVNKSAGPFDAVLCVGQFFPD-SSELLDEFMNYVEGRSEIPIPTYFIGDYGVG 76 (604)
Q Consensus 3 ~~KILv~GDvhG~----~~~l~~kv~~l~~k~GpfD~vi~~GDff~~-~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~ 76 (604)
.+||++++|+|.. ...+-+.++.+++ . ++|+|+++||++.. .....+.+.+.+..... +.|+|+|.||||-
T Consensus 49 ~~rI~~lSDlH~~~~~~~~~l~~~v~~i~~-~-~pDlVli~GD~~d~~~~~~~~~~~~~L~~L~~-~~pv~~V~GNHD~ 124 (271)
T PRK11340 49 PFKILFLADLHYSRFVPLSLISDAIALGIE-Q-KPDLILLGGDYVLFDMPLNFSAFSDVLSPLAE-CAPTFACFGNHDR 124 (271)
T ss_pred CcEEEEEcccCCCCcCCHHHHHHHHHHHHh-c-CCCEEEEccCcCCCCccccHHHHHHHHHHHhh-cCCEEEecCCCCc
Confidence 4899999999976 3223333333332 2 57999999999752 11112334445543332 4799999999995
No 57
>PHA02239 putative protein phosphatase
Probab=98.22 E-value=2.8e-06 Score=85.85 Aligned_cols=78 Identities=10% Similarity=0.115 Sum_probs=54.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChHHHHHH
Q 007415 4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLA 83 (604)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~~l~~ 83 (604)
|||+++||+||+++.+.+.++.+....++.|.||++||+..-.+...+.+..++. ....+.+++++.||||. .+++-
T Consensus 1 m~~~~IsDIHG~~~~l~~ll~~i~~~~~~~d~li~lGD~iDrG~~s~~v~~~l~~-~~~~~~~~~~l~GNHE~--~~l~~ 77 (235)
T PHA02239 1 MAIYVVPDIHGEYQKLLTIMDKINNERKPEETIVFLGDYVDRGKRSKDVVNYIFD-LMSNDDNVVTLLGNHDD--EFYNI 77 (235)
T ss_pred CeEEEEECCCCCHHHHHHHHHHHhhcCCCCCEEEEecCcCCCCCChHHHHHHHHH-HhhcCCCeEEEECCcHH--HHHHH
Confidence 6899999999999988777777765444579999999996643332222333322 12335689999999983 45554
Q ss_pred H
Q 007415 84 A 84 (604)
Q Consensus 84 l 84 (604)
+
T Consensus 78 ~ 78 (235)
T PHA02239 78 M 78 (235)
T ss_pred H
Confidence 4
No 58
>PHA02546 47 endonuclease subunit; Provisional
Probab=98.18 E-value=2.7e-05 Score=83.10 Aligned_cols=139 Identities=13% Similarity=0.122 Sum_probs=75.2
Q ss_pred CEEEEEcCCC-CC----------HHHHHHHHHHHHhhcCCCcEEEEecCCCCCCh----hhHHHHHH-HhcccCCCCCcE
Q 007415 4 PRILLCGDVL-GR----------LNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS----ELLDEFMN-YVEGRSEIPIPT 67 (604)
Q Consensus 4 ~KILv~GDvh-G~----------~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~----~~~~~~~~-~l~g~~~~p~pt 67 (604)
||||.++|+| |. +..+++++-.+..++ .+|+||++||+|.... .....+.+ ++....+.++|+
T Consensus 1 MKilhiSD~HLG~~~~~~~~~~~~~~~l~~ii~~a~~~-~vD~VliaGDlfD~~~~~~~~~~~~~~~~l~~~L~~~gi~v 79 (340)
T PHA02546 1 MKILLIGDQHLGVRKDDPWFQNYQLKFIKQAIEYSKAH-GITTWIQLGDTFDVRKAITQNTMNFVREKIFDLLKEAGITL 79 (340)
T ss_pred CeEEEEeeecCCCcCCChhhHHHHHHHHHHHHHHHHHc-CCCEEEECCcccCCCCCCCHHHHHHHHHHHHHHHHHCCCeE
Confidence 7999999999 31 334555554444455 4899999999986521 11112222 222234568999
Q ss_pred EEEcCCCCChHHHHHHHhccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHH
Q 007415 68 YFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRA 147 (604)
Q Consensus 68 yfv~GNh~~~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~ 147 (604)
|+|.||||.... ........ ..-....+|++..+....++++|++|..+. +...++...+..
T Consensus 80 ~~I~GNHD~~~~--~~~~~~~~-----~~ll~~~~~v~v~~~~~~v~i~g~~i~~lP-----------~~~~~~~~~~~~ 141 (340)
T PHA02546 80 HVLVGNHDMYYK--NTIRPNAP-----TELLGQYDNITVIDEPTTVDFDGCSIDLIP-----------WICKENTEEILE 141 (340)
T ss_pred EEEccCCCcccc--cccccCch-----HHHHhhCCCEEEeCCceEEEECCEEEEECC-----------CCCHHHHHHHHH
Confidence 999999985210 00000000 000011357766665455566776665431 223344443332
Q ss_pred hhcCCCCccEEEeCC
Q 007415 148 LAEEPGIVDLFLTNE 162 (604)
Q Consensus 148 l~~~~~~vDILLTh~ 162 (604)
..+ .....|||.|.
T Consensus 142 ~l~-~~~~~ill~H~ 155 (340)
T PHA02546 142 FIK-NSKSEYCVGHW 155 (340)
T ss_pred Hhc-cCCCcEEEEee
Confidence 211 24568999995
No 59
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=98.12 E-value=5e-06 Score=85.87 Aligned_cols=68 Identities=15% Similarity=0.213 Sum_probs=49.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCC
Q 007415 4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVG 76 (604)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~ 76 (604)
|+|+|+|||||+++.+.+.+.++.-.. ..|.++++||+..-++... ++.+++. +.+.++++|.||||.
T Consensus 1 M~~~vIGDIHG~~~~l~~ll~~~~~~~-~~D~li~lGDlVdrGp~s~-~vl~~l~---~l~~~~~~VlGNHD~ 68 (275)
T PRK00166 1 MATYAIGDIQGCYDELQRLLEKIDFDP-AKDTLWLVGDLVNRGPDSL-EVLRFVK---SLGDSAVTVLGNHDL 68 (275)
T ss_pred CcEEEEEccCCCHHHHHHHHHhcCCCC-CCCEEEEeCCccCCCcCHH-HHHHHHH---hcCCCeEEEecChhH
Confidence 579999999999998877676653222 4699999999976543322 3445553 334578999999984
No 60
>KOG4359 consensus Protein kinase C inhibitor-like protein [General function prediction only]
Probab=98.12 E-value=5.2e-06 Score=74.60 Aligned_cols=102 Identities=14% Similarity=0.164 Sum_probs=62.6
Q ss_pred CCCCcccCCCCC-C-CcceEEEECCEEEE-EecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHhcCC
Q 007415 388 SKECWFCLSSPS-V-ESHLIVSVGEYYYC-ALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGK 464 (604)
Q Consensus 388 ~~~C~FC~~~~~-~-~~~lIvs~g~~~yl-~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~~g~ 464 (604)
.+.|.||.+... . .+.+. -..++.|+ +=++.|-..-|-|+||++|+.+..+|..+...=++++.+.=+..+.....
T Consensus 30 ~~~C~FCDia~r~~~~~ell-~~En~~~V~fkDikPaA~~HYLvipK~Hi~~~~~L~k~~V~Lve~m~~~G~~~l~r~~~ 108 (166)
T KOG4359|consen 30 KSTCVFCDIAGRQDPGTELL-HCENEDLVCFKDIKPAATHHYLVVPKKHIGNCRTLRKDQVELVENMVTVGKTILERNNF 108 (166)
T ss_pred CCceEEEEeecccCCCCcee-EecCCcEEEEecCCccccceEEEechHHcCChhhcchhhHHHHHHHHHHHHHHHHHhcc
Confidence 458999998742 2 33433 34555555 55689999999999999999999999766443333333322233332111
Q ss_pred ceEEEe-eccCC------CCeeEEEEEecCcchH
Q 007415 465 EAVFFE-WLSKR------GTHANLQAVPIPTSKA 491 (604)
Q Consensus 465 ~~v~~E-~~~~~------~~H~HihvvPvp~~~~ 491 (604)
+.+-| +++.. +.|+|+|+|--|.+++
T Consensus 109 -td~~~~r~GFHLPPf~SV~HLHlH~I~P~~DMg 141 (166)
T KOG4359|consen 109 -TDFTNVRMGFHLPPFCSVSHLHLHVIAPVDDMG 141 (166)
T ss_pred -CCchheeEeccCCCcceeeeeeEeeecchHHhc
Confidence 22222 22322 4699999996556554
No 61
>PLN02533 probable purple acid phosphatase
Probab=98.11 E-value=0.00011 Score=80.66 Aligned_cols=208 Identities=14% Similarity=0.133 Sum_probs=108.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhh--HHHHHHHhcccCCCCCcEEEEcCCCCChHH-
Q 007415 3 PPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSEL--LDEFMNYVEGRSEIPIPTYFIGDYGVGAAK- 79 (604)
Q Consensus 3 ~~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~--~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~- 79 (604)
+.+++++||.+-. ...-+.++.+++ . .+|+||++||+.-.+... -+.+.+++... ...+|.+.++||||....
T Consensus 139 ~~~f~v~GDlG~~-~~~~~tl~~i~~-~-~pD~vl~~GDl~y~~~~~~~wd~f~~~i~~l-~s~~P~m~~~GNHE~~~~~ 214 (427)
T PLN02533 139 PIKFAVSGDLGTS-EWTKSTLEHVSK-W-DYDVFILPGDLSYANFYQPLWDTFGRLVQPL-ASQRPWMVTHGNHELEKIP 214 (427)
T ss_pred CeEEEEEEeCCCC-cccHHHHHHHHh-c-CCCEEEEcCccccccchHHHHHHHHHHhhhH-hhcCceEEeCccccccccc
Confidence 4689999998532 111123344433 2 589999999996442211 12233444322 235899999999995310
Q ss_pred -----HHHHHhccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHH-hhc---
Q 007415 80 -----VLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRA-LAE--- 150 (604)
Q Consensus 80 -----~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~-l~~--- 150 (604)
....+. ..+.--+...+ ...|.+| .+.++|..|..|+..... ....++.+-|++ |++
T Consensus 215 ~~~~~~f~~y~-~rf~mP~~~~g--~~~~~yY-----Sfd~g~vhfI~Lds~~~~------~~~~~Q~~WLe~dL~~~~r 280 (427)
T PLN02533 215 ILHPEKFTAYN-ARWRMPFEESG--STSNLYY-----SFNVYGVHIIMLGSYTDF------EPGSEQYQWLENNLKKIDR 280 (427)
T ss_pred cccCcCccchh-hcccCCccccC--CCCCceE-----EEEECCEEEEEEeCCccc------cCchHHHHHHHHHHHhhcc
Confidence 000000 00000000000 0122322 245678899888764221 112333333332 221
Q ss_pred CCCCccEEEeCCCCccccccccccccccCcCCCCCC-cHHHHHHHHHhCCCEEEEccCCCcccc-cccccCC-CcceeEE
Q 007415 151 EPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNT-DSTVSELVAEIKPRYHIAGSKGVFYAR-EPYSNVD-AVHVTRF 227 (604)
Q Consensus 151 ~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~G-s~~i~~l~~~lkPrYhf~Gh~~~fyEr-~Py~~~~-~~~~TRF 227 (604)
...+.-|++.|.||......... .. ...+ -..+..|+.+.++.+.|+||.|. ||| .|-.+.. ....|..
T Consensus 281 ~~~pwiIv~~H~P~y~s~~~~~~----~~---~~~~~r~~le~Ll~~~~VdlvlsGH~H~-YeR~~p~~~~~~~~~gpvy 352 (427)
T PLN02533 281 KTTPWVVAVVHAPWYNSNEAHQG----EK---ESVGMKESMETLLYKARVDLVFAGHVHA-YERFDRVYQGKTDKCGPVY 352 (427)
T ss_pred cCCCEEEEEeCCCeeecccccCC----cc---hhHHHHHHHHHHHHHhCCcEEEecceec-ccccccccCCccCCCCCEE
Confidence 12356789999999865321000 00 0112 24688899999999999999985 565 3433221 2345778
Q ss_pred EEcCCCCCc
Q 007415 228 LGLAPVGNK 236 (604)
Q Consensus 228 I~L~~~gn~ 236 (604)
|-.|.-|+.
T Consensus 353 iv~G~gG~~ 361 (427)
T PLN02533 353 ITIGDGGNR 361 (427)
T ss_pred EEeCCCccc
Confidence 878887774
No 62
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=98.11 E-value=2.9e-05 Score=76.22 Aligned_cols=72 Identities=14% Similarity=0.018 Sum_probs=47.9
Q ss_pred CCEEEEEcCCCCCHH-----------HHHHHHHHHHhhcCCCcEEEEecCCCCCChh---hHHHHHHHhcccCCCCCcEE
Q 007415 3 PPRILLCGDVLGRLN-----------QLFKRVQSVNKSAGPFDAVLCVGQFFPDSSE---LLDEFMNYVEGRSEIPIPTY 68 (604)
Q Consensus 3 ~~KILv~GDvhG~~~-----------~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~---~~~~~~~~l~g~~~~p~pty 68 (604)
.+|||+++|+|-... ...+.+.++.++. .+|+||++||++..... ....+.+++.......+|+|
T Consensus 2 ~~ki~~isDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~vv~~GDl~~~~~~~~~~~~~~~~~~~~l~~~~~p~~ 80 (199)
T cd07383 2 KFKILQFADLHFGEGEGTCEGCEADLKTVAFIERVLDAE-KPDLVVLTGDLITGENTNDNSTSALDKAVSPMIDRKIPWA 80 (199)
T ss_pred ceEEEEEeeecccCCCCCCCcchhhHHHHHHHHHHHhhc-CCCEEEECCccccCCCCchHHHHHHHHHHHHHHHcCCCEE
Confidence 579999999996322 2344455444444 58999999999654221 23345555544344579999
Q ss_pred EEcCCCC
Q 007415 69 FIGDYGV 75 (604)
Q Consensus 69 fv~GNh~ 75 (604)
+++||||
T Consensus 81 ~~~GNHD 87 (199)
T cd07383 81 ATFGNHD 87 (199)
T ss_pred EECccCC
Confidence 9999997
No 63
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=98.09 E-value=3.3e-05 Score=76.90 Aligned_cols=149 Identities=11% Similarity=0.047 Sum_probs=82.2
Q ss_pred EEEEEcCCCCCHH-------HHHHHHHHHHhhcCCCcEEEEecCCCCCCh--hhHHHHHHHhcccCCCCCcEEEEcCCCC
Q 007415 5 RILLCGDVLGRLN-------QLFKRVQSVNKSAGPFDAVLCVGQFFPDSS--ELLDEFMNYVEGRSEIPIPTYFIGDYGV 75 (604)
Q Consensus 5 KILv~GDvhG~~~-------~l~~kv~~l~~k~GpfD~vi~~GDff~~~~--~~~~~~~~~l~g~~~~p~ptyfv~GNh~ 75 (604)
+|++++|+|-..+ ...+.+.+...+. ++|+||++||+..... ..-..+.+.+....+.++|+++++||||
T Consensus 2 ~~~~~~D~q~~~~~~~~~~~~~~~~i~~~~~~~-~~d~iv~~GDl~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~GNHD 80 (214)
T cd07399 2 TLAVLPDTQYYTESYPEVFDAQTDWIVDNAEAL-NIAFVLHLGDIVDDGDNDAEWEAADKAFARLDKAGIPYSVLAGNHD 80 (214)
T ss_pred EEEEecCCCcCCcCCHHHHHHHHHHHHHHHHHc-CCCEEEECCCccCCCCCHHHHHHHHHHHHHHHHcCCcEEEECCCCc
Confidence 7999999995222 3333333333233 5899999999976533 2223334444333335799999999997
Q ss_pred ChHHHHHHHhccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHH-hhcCCCC
Q 007415 76 GAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRA-LAEEPGI 154 (604)
Q Consensus 76 ~~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~-l~~~~~~ 154 (604)
.- + +|. .. .++++++-|.+ |+.....
T Consensus 81 ~~------~---------------------~ld-~~-------------------------~~~~ql~WL~~~L~~~~~~ 107 (214)
T cd07399 81 LV------L---------------------ALE-FG-------------------------PRDEVLQWANEVLKKHPDR 107 (214)
T ss_pred ch------h---------------------hCC-CC-------------------------CCHHHHHHHHHHHHHCCCC
Confidence 20 0 011 00 01333443333 2222222
Q ss_pred ccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHh-CCCEEEEccCCCc
Q 007415 155 VDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEI-KPRYHIAGSKGVF 210 (604)
Q Consensus 155 vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~l-kPrYhf~Gh~~~f 210 (604)
-=|+++|.+|..-....+.. ... .....+...+.+|+++. +.+..|+||.|..
T Consensus 108 ~~iv~~H~p~~~~~~~~~~~-~~~--~~~~~~~~~~~~ll~~~~~V~~v~~GH~H~~ 161 (214)
T cd07399 108 PAILTTHAYLNCDDSRPDSI-DYD--SDVNDGQQIWDKLVKKNDNVFMVLSGHVHGA 161 (214)
T ss_pred CEEEEecccccCCCCcCccc-ccc--cccccHHHHHHHHHhCCCCEEEEEccccCCC
Confidence 34899999987432111100 000 00124566788888887 6889999998765
No 64
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.09 E-value=0.0002 Score=73.28 Aligned_cols=189 Identities=13% Similarity=0.097 Sum_probs=100.3
Q ss_pred EEEEcCCCCCHH---HH--H-H-HHHHHHhhcCCCcEEEEecCCCCCCh-------hhHHHHHHHhc---ccCCC-CCcE
Q 007415 6 ILLCGDVLGRLN---QL--F-K-RVQSVNKSAGPFDAVLCVGQFFPDSS-------ELLDEFMNYVE---GRSEI-PIPT 67 (604)
Q Consensus 6 ILv~GDvhG~~~---~l--~-~-kv~~l~~k~GpfD~vi~~GDff~~~~-------~~~~~~~~~l~---g~~~~-p~pt 67 (604)
|+.++|+|-... .. . + .++.+++ . +.|+||++||+..... ....++.+|++ ..... +.|+
T Consensus 2 ~~~iSDlH~g~~~~~~~~~~~~~~~~~i~~-~-~pd~i~~~GD~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 79 (256)
T cd07401 2 FVHISDIHVSSFHPPNRAQDETFCSNFIDV-I-KPALVLATGDLTDNKTGNKLPSYQYQEEWQKYYNILKESSVINKEKW 79 (256)
T ss_pred EEEecccccCCcCchhhhhHHHHHHHHHHh-h-CCCEEEEccccccccccCCCcccccHHHHHHHHHHHHHhCCCCcceE
Confidence 678899996321 11 1 1 1223322 2 5799999999864311 11222323332 22222 5899
Q ss_pred EEEcCCCCChHHHHHHHhccccccCcccCCceecCCEEEcCCCC--eEE--EcCcEEEEEecccCCCCC----CCCCCCH
Q 007415 68 YFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSG--NFT--LHGLSVAYLSGRQSSEGQ----QFGTYSQ 139 (604)
Q Consensus 68 yfv~GNh~~~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~g--v~~--~~GlrIa~lgG~~~~~~~----~~~~~te 139 (604)
|.++||||.. .... ... ... .+.. .+.. .+.... .++ .++++|.+|......+.. ....+++
T Consensus 80 ~~v~GNHD~~-~~~~-~~~-~~~-~~~~---y~~~---~~~~~~~~~~~~~~~~~~~I~Ldt~~~~~~~~~~~~~g~l~~ 149 (256)
T cd07401 80 FDIRGNHDLF-NIPS-LDS-ENN-YYRK---YSAT---GRDGSFSFSHTTRFGNYSFIGVDPTLFPGPKRPFNFFGSLDK 149 (256)
T ss_pred EEeCCCCCcC-CCCC-ccc-hhh-HHHH---hhee---cCCCccceEEEecCCCEEEEEEcCccCCCCCCCCceeccCCH
Confidence 9999999852 1000 000 000 0000 0000 011111 112 368899988876532111 1245678
Q ss_pred HHHHHHHH-hhcC-CCCccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcccc-ccc
Q 007415 140 DDVDALRA-LAEE-PGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAR-EPY 216 (604)
Q Consensus 140 ~d~~~L~~-l~~~-~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fyEr-~Py 216 (604)
++++.|.+ +... ..+.-|+++|.|+....... ...+.. +.+++++.++.+.||||.|.. ++ .|.
T Consensus 150 ~ql~wL~~~L~~~~~~~~~IV~~HhP~~~~~~~~-----------~~~~~~-~~~ll~~~~v~~vl~GH~H~~-~~~~p~ 216 (256)
T cd07401 150 KLLDRLEKELEKSTNSNYTIWFGHYPTSTIISPS-----------AKSSSK-FKDLLKKYNVTAYLCGHLHPL-GGLEPV 216 (256)
T ss_pred HHHHHHHHHHHhcccCCeEEEEEcccchhccCCC-----------cchhHH-HHHHHHhcCCcEEEeCCccCC-Ccceee
Confidence 88887765 3222 23567999999985432110 112223 888899999999999998864 55 777
Q ss_pred ccC
Q 007415 217 SNV 219 (604)
Q Consensus 217 ~~~ 219 (604)
-+.
T Consensus 217 h~~ 219 (256)
T cd07401 217 HYA 219 (256)
T ss_pred eec
Confidence 664
No 65
>PRK04036 DNA polymerase II small subunit; Validated
Probab=98.03 E-value=6.8e-05 Score=84.05 Aligned_cols=117 Identities=16% Similarity=0.222 Sum_probs=66.7
Q ss_pred CCEEEEEcCCC-CCH---HHHHHHH-HHHHhh-------cCCCcEEEEecCCCCCCh---------------hhHHHHHH
Q 007415 3 PPRILLCGDVL-GRL---NQLFKRV-QSVNKS-------AGPFDAVLCVGQFFPDSS---------------ELLDEFMN 55 (604)
Q Consensus 3 ~~KILv~GDvh-G~~---~~l~~kv-~~l~~k-------~GpfD~vi~~GDff~~~~---------------~~~~~~~~ 55 (604)
.++|++++|+| |.- ...+.++ ..++.. ....|.||++||++.... .....+.+
T Consensus 243 ~~~i~~ISDlHlgs~~~~~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~~~~~p~~~~~~~~~~~~~~~~~l~~ 322 (504)
T PRK04036 243 KVYAVFISDVHVGSKEFLEDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDGIGIYPGQEEELEIVDIYEQYEAAAE 322 (504)
T ss_pred ccEEEEEcccCCCCcchhHHHHHHHHHHHhCCCccchhhhhcCCEEEEeCcccccccCCccchhhccchhhHHHHHHHHH
Confidence 46899999999 542 1122222 222311 224799999999975310 01123555
Q ss_pred HhcccCCCCCcEEEEcCCCCChHHHHHHHhccccccCcccCC-ceec-CCEEEcCCCCeEEEcCcEEEEEeccc
Q 007415 56 YVEGRSEIPIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDG-FKVT-DNLFWLKGSGNFTLHGLSVAYLSGRQ 127 (604)
Q Consensus 56 ~l~g~~~~p~ptyfv~GNh~~~~~~l~~l~~~~~~~~~~~~g-~ei~-~Nl~~Lg~~gv~~~~GlrIa~lgG~~ 127 (604)
+|... ...+|+++++||||.... .++.. .+...- ..+. .|+.+|..-..++++|.+|.+..|..
T Consensus 323 ~L~~L-~~~i~V~~ipGNHD~~~~---~lPQ~----~l~~~l~~~l~~~~v~~lsNP~~i~l~G~~iLl~HG~~ 388 (504)
T PRK04036 323 YLKQI-PEDIKIIISPGNHDAVRQ---AEPQP----AFPEEIRSLFPEHNVTFVSNPALVNLHGVDVLIYHGRS 388 (504)
T ss_pred HHHhh-hcCCeEEEecCCCcchhh---ccCCC----CccHHHHHhcCcCCeEEecCCeEEEECCEEEEEECCCC
Confidence 66432 235899999999984211 01100 000000 0011 47888887556788999999999975
No 66
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.92 E-value=2.6e-05 Score=79.69 Aligned_cols=74 Identities=23% Similarity=0.307 Sum_probs=48.5
Q ss_pred CEEEEEcCCCC-C----------HHHHHHHHHHHHhhcCCCcEEEEecCCCCCCh---hhHHHHHHHhcccCCCC-CcEE
Q 007415 4 PRILLCGDVLG-R----------LNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS---ELLDEFMNYVEGRSEIP-IPTY 68 (604)
Q Consensus 4 ~KILv~GDvhG-~----------~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~---~~~~~~~~~l~g~~~~p-~pty 68 (604)
||||.++|+|- . ....++++..+..+. .+|+||++||+|.... .+...+.+++....... +|+|
T Consensus 1 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~l~~~~~~~-~~D~lli~GDi~d~~~p~~~~~~~~~~~l~~l~~~~~i~v~ 79 (253)
T TIGR00619 1 MRILHTSDWHLGKTLEGVSRLAEQKAFLDDLLEFAKAE-QIDALLVAGDVFDTANPPAEAQELFNAFFRNLSDANPIPIV 79 (253)
T ss_pred CEEEEEhhhcCCCccCCCChHHHHHHHHHHHHHHHHHc-CCCEEEECCccCCCCCCCHHHHHHHHHHHHHHHhcCCceEE
Confidence 79999999993 2 122344444443344 4899999999987532 22223445554434444 9999
Q ss_pred EEcCCCCChH
Q 007415 69 FIGDYGVGAA 78 (604)
Q Consensus 69 fv~GNh~~~~ 78 (604)
+|.||||...
T Consensus 80 ~i~GNHD~~~ 89 (253)
T TIGR00619 80 VISGNHDSAQ 89 (253)
T ss_pred EEccCCCChh
Confidence 9999999753
No 67
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=97.90 E-value=0.0011 Score=68.58 Aligned_cols=205 Identities=12% Similarity=0.044 Sum_probs=109.8
Q ss_pred CEEEEEcCCCCCHH----------------HHHHHHHHHHhhcCCCcEEEE-ecCCCCCChh--hH--------HHHHHH
Q 007415 4 PRILLCGDVLGRLN----------------QLFKRVQSVNKSAGPFDAVLC-VGQFFPDSSE--LL--------DEFMNY 56 (604)
Q Consensus 4 ~KILv~GDvhG~~~----------------~l~~kv~~l~~k~GpfD~vi~-~GDff~~~~~--~~--------~~~~~~ 56 (604)
.+||.++|+||.+. .+...++.+.+++ .|+|++ +||++..... .. ....+.
T Consensus 1 l~il~t~D~Hg~~~~~~~~~~~~~~~gg~~~l~~~i~~~r~~~--~~~l~ld~GD~~~gs~~~~~~~~~~~~~~~~~~~~ 78 (277)
T cd07410 1 LRILATSDLHGNLLPYDYYTDKPDASGGLARVATLIKKARAEN--PNTLLIDNGDTIQGSPLADYYAKIEDGDPHPMIAA 78 (277)
T ss_pred CeEEEEeccccceeCccccCCCcCCccCHHHHHHHHHHHHhcC--CCeEEEeCCccCCccHHHHHhhhcccCCCChHHHH
Confidence 47999999999873 3444455554443 477776 9999764321 00 112223
Q ss_pred hcccCCCCCcEEEEcCCCCChH--HHH-HHHhccccccCcccCCceecCCEEEcC-------CCCeEEEc-CcEEEEEec
Q 007415 57 VEGRSEIPIPTYFIGDYGVGAA--KVL-LAASKNSANQGFKMDGFKVTDNLFWLK-------GSGNFTLH-GLSVAYLSG 125 (604)
Q Consensus 57 l~g~~~~p~ptyfv~GNh~~~~--~~l-~~l~~~~~~~~~~~~g~ei~~Nl~~Lg-------~~gv~~~~-GlrIa~lgG 125 (604)
+ ..+.. .+++.||||... +.+ +.+.. .+...++.|+.+.. ..-|++++ |+||+.+|-
T Consensus 79 l---n~~g~-d~~~lGNHe~d~g~~~l~~~~~~--------~~~~~l~aNv~~~~~~~~~~~~~~i~~~~~g~kVgviG~ 146 (277)
T cd07410 79 M---NALGY-DAGTLGNHEFNYGLDYLDKVIKQ--------ANFPVLSANVIDADTGEPFLKPYVILERDVGVKVGIIGL 146 (277)
T ss_pred H---HhcCC-CEEeecccCcccCHHHHHHHHHh--------CCCCEEEEEEEeCCCCCcccCCEEEEEecCCCEEEEEec
Confidence 3 34444 477789999652 222 22221 22356788888764 12355789 999999997
Q ss_pred ccCCCCC-----C--CCCCCHHHHHHHH----HhhcCCCCcc--EEEeCCCCccccccccccccccCcCCCCCCcHHHHH
Q 007415 126 RQSSEGQ-----Q--FGTYSQDDVDALR----ALAEEPGIVD--LFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSE 192 (604)
Q Consensus 126 ~~~~~~~-----~--~~~~te~d~~~L~----~l~~~~~~vD--ILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~ 192 (604)
....... . ...+++. ++++. .+.. .++| |+|+|.--..-.. + .........+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~v~~lr~--~~~D~IIvl~H~g~~~~~~-------~-----~~~~~~~~~~ 211 (277)
T cd07410 147 TTPQIPNWEKPNLIGGLKFTDP-VETAKKYVPKLRA--EGADVVVVLAHGGFERDLE-------E-----SLTGENAAYE 211 (277)
T ss_pred CCcccccccCcccCCCcEEcCH-HHHHHHHHHHHHH--cCCCEEEEEecCCcCCCcc-------c-----ccCCccHHHH
Confidence 6432110 0 0122211 12222 2211 3466 4677763322100 0 0122233456
Q ss_pred HHHH-hCCCEEEEccCCCcccccccccCCCcceeEEEEcCCCCCcccceeEEEeccC
Q 007415 193 LVAE-IKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKEKQKFIHALSPT 248 (604)
Q Consensus 193 l~~~-lkPrYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~~~gn~~K~Kw~yAf~i~ 248 (604)
|+++ -..-..|+||.|..+..+ ....|.++.-|..|. ++--++|+
T Consensus 212 la~~~~~vD~IlgGHsH~~~~~~------~~~~~~v~q~g~~g~-----~vg~l~l~ 257 (277)
T cd07410 212 LAEEVPGIDAILTGHQHRRFPGP------TVNGVPVVQPGNWGS-----HLGVIDLT 257 (277)
T ss_pred HHhcCCCCcEEEeCCCccccccC------CcCCEEEEcCChhhC-----EEEEEEEE
Confidence 6665 356678899988764321 234578887777664 56555554
No 68
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=97.86 E-value=3.1e-05 Score=76.64 Aligned_cols=66 Identities=17% Similarity=0.152 Sum_probs=46.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCC
Q 007415 4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVG 76 (604)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~ 76 (604)
.||+|+||+||++..+.+.++.+... ...|.+|++||+..-.+.. .+..+++.. .++++|.||||.
T Consensus 1 ~ri~~isDiHg~~~~l~~~l~~~~~~-~~~d~~~~~GD~v~~g~~~-~~~~~~l~~-----~~~~~v~GNhe~ 66 (207)
T cd07424 1 GRDFVVGDIHGHYSLLQKALDAVGFD-PARDRLISVGDLIDRGPES-LACLELLLE-----PWFHAVRGNHEQ 66 (207)
T ss_pred CCEEEEECCCCCHHHHHHHHHHcCCC-CCCCEEEEeCCcccCCCCH-HHHHHHHhc-----CCEEEeECCChH
Confidence 37999999999998776666655322 2479999999996643322 234455532 368999999984
No 69
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=97.85 E-value=2.5e-05 Score=78.90 Aligned_cols=77 Identities=13% Similarity=0.110 Sum_probs=51.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhh-------cC-CCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCC
Q 007415 4 PRILLCGDVLGRLNQLFKRVQSVNKS-------AG-PFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGV 75 (604)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k-------~G-pfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~ 75 (604)
|||.|+||+||+++.|-+.++++.-. .+ +.|.+|++||+..-+.. ..+..+++.... ..-.+++|-||||
T Consensus 1 ~~i~vigDIHG~~~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDrG~~-s~evl~~l~~l~-~~~~~~~v~GNHE 78 (234)
T cd07423 1 GPFDIIGDVHGCYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPD-SPEVLRLVMSMV-AAGAALCVPGNHD 78 (234)
T ss_pred CCeEEEEECCCCHHHHHHHHHHcCCccccCccccCCCCCEEEEECCccCCCCC-HHHHHHHHHHHh-hCCcEEEEECCcH
Confidence 68999999999999888877776321 11 36899999999765433 223445543211 1235889999998
Q ss_pred ChHHHHHHH
Q 007415 76 GAAKVLLAA 84 (604)
Q Consensus 76 ~~~~~l~~l 84 (604)
. .++..+
T Consensus 79 ~--~l~~~~ 85 (234)
T cd07423 79 N--KLYRKL 85 (234)
T ss_pred H--HHHHHh
Confidence 4 344433
No 70
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=97.73 E-value=8.4e-05 Score=81.12 Aligned_cols=75 Identities=15% Similarity=0.152 Sum_probs=47.6
Q ss_pred CEEEEEcCCCC-C----------HHHHHHHHHHHHhhcCCCcEEEEecCCCCCCh---hhHHHHHHHhcccCCCCCcEEE
Q 007415 4 PRILLCGDVLG-R----------LNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS---ELLDEFMNYVEGRSEIPIPTYF 69 (604)
Q Consensus 4 ~KILv~GDvhG-~----------~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~---~~~~~~~~~l~g~~~~p~ptyf 69 (604)
||||.++|+|- . ...+++++..+..+. .+|+||++||+|.... .+...+.+++......++|+|+
T Consensus 1 mkilh~SDlHlG~~~~~~~~~~~~~~~l~~l~~~i~~~-~~D~viIaGDifD~~~p~~~a~~~~~~~l~~L~~~~~~v~~ 79 (407)
T PRK10966 1 MRILHTSDWHLGQNFYSKSRAAEHQAFLDWLLEQVQEH-QVDAIIVAGDIFDTGSPPSYARELYNRFVVNLQQTGCQLVV 79 (407)
T ss_pred CEEEEEcccCCCCcccCcccHHHHHHHHHHHHHHHHhc-CCCEEEECCccccCCCCcHHHHHHHHHHHHHHHhcCCcEEE
Confidence 79999999993 2 112233443333334 4899999999986421 1112234444443456789999
Q ss_pred EcCCCCChHH
Q 007415 70 IGDYGVGAAK 79 (604)
Q Consensus 70 v~GNh~~~~~ 79 (604)
|.||||....
T Consensus 80 I~GNHD~~~~ 89 (407)
T PRK10966 80 LAGNHDSVAT 89 (407)
T ss_pred EcCCCCChhh
Confidence 9999997543
No 71
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=97.73 E-value=4.8e-05 Score=76.02 Aligned_cols=72 Identities=18% Similarity=0.203 Sum_probs=51.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChHHHHHH
Q 007415 4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLA 83 (604)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~~l~~ 83 (604)
.||+|+||+||+++.|.+.++.+..+. ..|.+|++||+..-++. ..+..+++.. ..+++|.||||. .+++.
T Consensus 17 ~ri~vigDIHG~~~~L~~lL~~i~~~~-~~D~li~lGDlvDrGp~-s~~vl~~l~~-----~~~~~v~GNHE~--~~l~~ 87 (218)
T PRK11439 17 RHIWLVGDIHGCFEQLMRKLRHCRFDP-WRDLLISVGDLIDRGPQ-SLRCLQLLEE-----HWVRAVRGNHEQ--MALDA 87 (218)
T ss_pred CeEEEEEcccCCHHHHHHHHHhcCCCc-ccCEEEEcCcccCCCcC-HHHHHHHHHc-----CCceEeeCchHH--HHHHH
Confidence 489999999999999988888774332 36999999999764433 2335566532 236799999983 44554
Q ss_pred H
Q 007415 84 A 84 (604)
Q Consensus 84 l 84 (604)
+
T Consensus 88 ~ 88 (218)
T PRK11439 88 L 88 (218)
T ss_pred H
Confidence 4
No 72
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=97.69 E-value=6.5e-05 Score=77.29 Aligned_cols=68 Identities=18% Similarity=0.202 Sum_probs=48.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCC
Q 007415 4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVG 76 (604)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~ 76 (604)
|.++|+|||||+++++...++++.-.. .-|.++++||+..-++... +..+++. ..+-.+++|.||||.
T Consensus 1 m~~YvIGDIHGc~daL~~LL~~i~f~~-~~D~l~~lGDlVdRGP~sl-evL~~l~---~l~~~~~~VlGNHD~ 68 (279)
T TIGR00668 1 MATYLIGDLHGCYDELQALLERVEFDP-GQDTLWLTGDLVARGPGSL-EVLRYVK---SLGDAVRLVLGNHDL 68 (279)
T ss_pred CcEEEEEcccCCHHHHHHHHHHhCcCC-CCCEEEEeCCccCCCCCHH-HHHHHHH---hcCCCeEEEEChhHH
Confidence 459999999999998888887764222 3699999999976544322 2445553 233346799999984
No 73
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=97.67 E-value=0.00011 Score=79.83 Aligned_cols=74 Identities=22% Similarity=0.296 Sum_probs=50.8
Q ss_pred CEEEEEcCCCCC---------HHHH---HHHHHHHHhhcCCCcEEEEecCCCCCC---hhhHHHHHHHhcccCCCCCcEE
Q 007415 4 PRILLCGDVLGR---------LNQL---FKRVQSVNKSAGPFDAVLCVGQFFPDS---SELLDEFMNYVEGRSEIPIPTY 68 (604)
Q Consensus 4 ~KILv~GDvhG~---------~~~l---~~kv~~l~~k~GpfD~vi~~GDff~~~---~~~~~~~~~~l~g~~~~p~pty 68 (604)
||||.++|+|=. ++.. |..+-.+.++. ..|+||++||+|... ..+...+.+.+.......+|+|
T Consensus 1 mkilHtSD~HLG~~~~~~~~r~~d~~~~f~~~l~~a~~~-~vD~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~ 79 (390)
T COG0420 1 MKILHTSDWHLGSKQLNLPSRLEDQKKAFDELLEIAKEE-KVDFVLIAGDLFDTNNPSPRALKLFLEALRRLKDAGIPVV 79 (390)
T ss_pred CeeEEecccccchhhccCccchHHHHHHHHHHHHHHHHc-cCCEEEEccccccCCCCCHHHHHHHHHHHHHhccCCCcEE
Confidence 799999999954 2222 22222222333 479999999999752 3445556666655566889999
Q ss_pred EEcCCCCChH
Q 007415 69 FIGDYGVGAA 78 (604)
Q Consensus 69 fv~GNh~~~~ 78 (604)
.|.||||.+.
T Consensus 80 ~I~GNHD~~~ 89 (390)
T COG0420 80 VIAGNHDSPS 89 (390)
T ss_pred EecCCCCchh
Confidence 9999999764
No 74
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=97.60 E-value=9.7e-05 Score=75.18 Aligned_cols=77 Identities=12% Similarity=0.111 Sum_probs=50.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhhc-------CCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCC
Q 007415 4 PRILLCGDVLGRLNQLFKRVQSVNKSA-------GPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVG 76 (604)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~-------GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~ 76 (604)
||+.|+||+||.++.+.+.++++.-.. ..-|.+|++||+..-++... +..+++.... ..-.++++-||||.
T Consensus 1 ~~~~vIGDIHG~~~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDRGp~S~-~vl~~~~~~~-~~~~~~~l~GNHE~ 78 (245)
T PRK13625 1 MKYDIIGDIHGCYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSL-RMIEIVWELV-EKKAAYYVPGNHCN 78 (245)
T ss_pred CceEEEEECccCHHHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCCCcChH-HHHHHHHHHh-hCCCEEEEeCccHH
Confidence 689999999999998887777654321 12379999999976433322 2344432221 23368999999973
Q ss_pred hHHHHHHH
Q 007415 77 AAKVLLAA 84 (604)
Q Consensus 77 ~~~~l~~l 84 (604)
.++..+
T Consensus 79 --~~l~~~ 84 (245)
T PRK13625 79 --KLYRFF 84 (245)
T ss_pred --HHHHHH
Confidence 445544
No 75
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=97.58 E-value=0.0002 Score=74.06 Aligned_cols=71 Identities=14% Similarity=0.261 Sum_probs=47.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhcC----CCcEEEEecCCCCCChhhHHHHHHHhcccC-CCC-CcEEEEcCCCCC
Q 007415 5 RILLCGDVLGRLNQLFKRVQSVNKSAG----PFDAVLCVGQFFPDSSELLDEFMNYVEGRS-EIP-IPTYFIGDYGVG 76 (604)
Q Consensus 5 KILv~GDvhG~~~~l~~kv~~l~~k~G----pfD~vi~~GDff~~~~~~~~~~~~~l~g~~-~~p-~ptyfv~GNh~~ 76 (604)
+|+++||+||+++.|-..++.+....+ ..+.+|++||+..-.++. .++.++|.... .-+ ..++|+.||||.
T Consensus 3 ~iyaIGDIHG~~d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGPdS-~eVld~L~~l~~~~~~~~vv~LrGNHE~ 79 (304)
T cd07421 3 VVICVGDIHGYISKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPET-RKVIDFLISLPEKHPKQRHVFLCGNHDF 79 (304)
T ss_pred eEEEEEeccCCHHHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCCCH-HHHHHHHHHhhhcccccceEEEecCChH
Confidence 699999999999988877777765421 357899999996543322 23444443322 121 257899999984
No 76
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=97.56 E-value=0.00013 Score=74.62 Aligned_cols=66 Identities=17% Similarity=0.220 Sum_probs=47.0
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCC
Q 007415 6 ILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVG 76 (604)
Q Consensus 6 ILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~ 76 (604)
++|+||+||+++.+-+.++++.... ..|.++++||+..-++... +..+++. +..-.+++|.||||.
T Consensus 1 ~yvIGDIHG~~~~L~~LL~~i~~~~-~~D~Li~lGDlVdRGp~s~-evl~~l~---~l~~~v~~VlGNHD~ 66 (257)
T cd07422 1 TYAIGDIQGCYDELQRLLEKINFDP-AKDRLWLVGDLVNRGPDSL-ETLRFVK---SLGDSAKTVLGNHDL 66 (257)
T ss_pred CEEEECCCCCHHHHHHHHHhcCCCC-CCCEEEEecCcCCCCcCHH-HHHHHHH---hcCCCeEEEcCCchH
Confidence 5899999999998877777664322 3699999999976544333 3445553 233468899999985
No 77
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=97.53 E-value=0.00016 Score=72.37 Aligned_cols=71 Identities=18% Similarity=0.213 Sum_probs=48.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChHHHHHHH
Q 007415 5 RILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLAA 84 (604)
Q Consensus 5 KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~~l~~l 84 (604)
||+|+||+||+++.+.+.++.+.-+. ..|.+||+||+..-++... +..+++. + -.+++|.||||. .++..+
T Consensus 16 ri~visDiHg~~~~l~~~l~~~~~~~-~~d~l~~lGD~vdrG~~~~-~~l~~l~---~--~~~~~v~GNHE~--~~~~~~ 86 (218)
T PRK09968 16 HIWVVGDIHGEYQLLQSRLHQLSFCP-ETDLLISVGDNIDRGPESL-NVLRLLN---Q--PWFISVKGNHEA--MALDAF 86 (218)
T ss_pred eEEEEEeccCCHHHHHHHHHhcCCCC-CCCEEEECCCCcCCCcCHH-HHHHHHh---h--CCcEEEECchHH--HHHHHH
Confidence 89999999999998877666653222 4799999999976433322 3445553 1 246899999984 344433
No 78
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=97.51 E-value=0.0047 Score=64.41 Aligned_cols=219 Identities=16% Similarity=0.137 Sum_probs=113.3
Q ss_pred CEEEEEcCCCCCHHH--------------HHHHHHHHHhhcCCCcEEEEecCCCCCChh--hH---HHHHHHhcccCCCC
Q 007415 4 PRILLCGDVLGRLNQ--------------LFKRVQSVNKSAGPFDAVLCVGQFFPDSSE--LL---DEFMNYVEGRSEIP 64 (604)
Q Consensus 4 ~KILv~GDvhG~~~~--------------l~~kv~~l~~k~GpfD~vi~~GDff~~~~~--~~---~~~~~~l~g~~~~p 64 (604)
++||.++|+||++.. +...++.+.+++ +-.++|-+||+|..... .. ....+.+ ..++
T Consensus 1 i~il~tnD~Hg~~~~~~~~~~~~~gG~arl~~~i~~~r~~~-~~~l~ld~GD~~~gs~~~s~~~~g~~~~~~~---n~~g 76 (288)
T cd07412 1 VQILAINDFHGRLEPPGKVVTVPAGGAAYLAAYLDEARAQN-PNSLFVSAGDLIGASPFESALLQDEPTIEAL---NAMG 76 (288)
T ss_pred CeEEEEeccccCccCCCCccccccccHHHHHHHHHHHHhcC-CCeEEEeCCcccccccchhhcccCCcHHHHH---HhhC
Confidence 479999999998543 444455544443 45699999998753211 00 0122333 3444
Q ss_pred CcEEEEcCCCCCh---HHHHHHHhcccc-------ccCcc-cCCceecCCEEEcC-------CCCeEEEcCcEEEEEecc
Q 007415 65 IPTYFIGDYGVGA---AKVLLAASKNSA-------NQGFK-MDGFKVTDNLFWLK-------GSGNFTLHGLSVAYLSGR 126 (604)
Q Consensus 65 ~ptyfv~GNh~~~---~~~l~~l~~~~~-------~~~~~-~~g~ei~~Nl~~Lg-------~~gv~~~~GlrIa~lgG~ 126 (604)
+. +++.||||-. ..+.+.+..... -+.|. ..-..++.|+.+-. ..-+++++|+||+.+|=.
T Consensus 77 ~D-a~t~GNHefd~G~~~l~~~~~~~~~~~~~~~~~~~~~~a~fp~l~aNv~~~~~~~~~~~py~i~~~~G~kIgviGl~ 155 (288)
T cd07412 77 VD-ASAVGNHEFDEGYAELLRRINGGCHPTTGCQAGYPFPGANFPYLAANVYDKGTGTPALPPYTIKDVGGVKVGFIGAV 155 (288)
T ss_pred Ce-eeeecccccccCHHHHHHHHhccCCccccccccccCcCCCCCEEEEeEEecCCCCcccCCEEEEEECCEEEEEEeec
Confidence 44 4777999954 223333321000 00000 11246788887643 234457899999999976
Q ss_pred cCCCCC-------CCCCCCHHHHHHHHH----hhcCCCCccE--EEeCCCCccccccccccccccCcCCCCCCcHHHHHH
Q 007415 127 QSSEGQ-------QFGTYSQDDVDALRA----LAEEPGIVDL--FLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSEL 193 (604)
Q Consensus 127 ~~~~~~-------~~~~~te~d~~~L~~----l~~~~~~vDI--LLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l 193 (604)
...... ....|+. .++++++ +.+ .++|+ +|+|.--..-.. . .. . ........++
T Consensus 156 ~~~~~~~~~~~~~~g~~f~d-~~e~~~~~v~~lr~--~~~D~IIvL~H~G~~~~~~--~-----~~--~-~~~~~~~~~l 222 (288)
T cd07412 156 TKDTPNLVSPDGVAGLEFTD-EVEAINAVAPELKA--GGVDAIVVLAHEGGSTKGG--D-----DT--C-SAASGPIADI 222 (288)
T ss_pred CCCccceeccccccCceEcC-HHHHHHHHHHHHHH--CCCCEEEEEeCCCCCCCCC--C-----cc--c-cccChhHHHH
Confidence 432110 0112221 1222322 221 35665 668844321110 0 00 0 0111234566
Q ss_pred HHHhC--CCEEEEccCCCcccccccccCCCcceeEEEEcCCCCCcccceeEEEeccCC
Q 007415 194 VAEIK--PRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKEKQKFIHALSPTP 249 (604)
Q Consensus 194 ~~~lk--PrYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~~~gn~~K~Kw~yAf~i~p 249 (604)
+.++. .-..+.||.|..+.. |.. ....|.++.-|..|+ ++--..|..
T Consensus 223 ~~~~~~~iD~IlgGHsH~~~~~-~~~---~~~~~~v~q~g~~g~-----~vg~i~l~~ 271 (288)
T cd07412 223 VNRLDPDVDVVFAGHTHQAYNC-TVP---AGNPRLVTQAGSYGK-----AVADVDLTI 271 (288)
T ss_pred HhhcCCCCCEEEeCccCccccc-ccc---CcCCEEEEecChhhc-----eeEEEEEEE
Confidence 66654 478899999877652 211 234688888888775 666666553
No 79
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=97.47 E-value=0.0027 Score=65.23 Aligned_cols=73 Identities=16% Similarity=0.204 Sum_probs=47.3
Q ss_pred CEEEEEcCCCCC--H---HHHHHH-HHHHHhhcCCCcEEEEecCCCCCCh-hhHHHHHHHhcccCCCCCcEEEEcCCCCC
Q 007415 4 PRILLCGDVLGR--L---NQLFKR-VQSVNKSAGPFDAVLCVGQFFPDSS-ELLDEFMNYVEGRSEIPIPTYFIGDYGVG 76 (604)
Q Consensus 4 ~KILv~GDvhG~--~---~~l~~k-v~~l~~k~GpfD~vi~~GDff~~~~-~~~~~~~~~l~g~~~~p~ptyfv~GNh~~ 76 (604)
|||+.++|+|-. . ..++.. ++.++ ..++|+||+.||+-.... .+-..+.++|. ....+.|+++++||||.
T Consensus 1 ~~i~~isD~H~~~~~~~~~~~~~~~~~~i~--~~~~D~~v~tGDl~~~~~~~~~~~~~~~l~-~~~~~~~~~~vpGNHD~ 77 (301)
T COG1409 1 MRIAHISDLHLGALGVDSEELLEALLAAIE--QLKPDLLVVTGDLTNDGEPEEYRRLKELLA-RLELPAPVIVVPGNHDA 77 (301)
T ss_pred CeEEEEecCcccccccchHHHHHHHHHHHh--cCCCCEEEEccCcCCCCCHHHHHHHHHHHh-hccCCCceEeeCCCCcC
Confidence 689999999976 1 222222 23332 235799999999955422 22233556664 34678999999999996
Q ss_pred hHH
Q 007415 77 AAK 79 (604)
Q Consensus 77 ~~~ 79 (604)
...
T Consensus 78 ~~~ 80 (301)
T COG1409 78 RVV 80 (301)
T ss_pred Cch
Confidence 533
No 80
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=97.47 E-value=0.00022 Score=71.45 Aligned_cols=68 Identities=15% Similarity=0.209 Sum_probs=46.3
Q ss_pred EEEcCCCCCHHHHHHHHHHHHhhc------CCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCC
Q 007415 7 LLCGDVLGRLNQLFKRVQSVNKSA------GPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVG 76 (604)
Q Consensus 7 Lv~GDvhG~~~~l~~kv~~l~~k~------GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~ 76 (604)
.|+|||||+++.|.+.++++.... .+.|.+|++||+..-++. ..+..+++..... +-.+++|-||||.
T Consensus 2 ~vIGDIHG~~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDRGp~-S~~vl~~l~~l~~-~~~~~~l~GNHE~ 75 (222)
T cd07413 2 DFIGDIHGHAEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRGPE-IRELLEIVKSMVD-AGHALAVMGNHEF 75 (222)
T ss_pred EEEEeccCCHHHHHHHHHHcCCCccccccCCCCCEEEEeCcccCCCCC-HHHHHHHHHHhhc-CCCEEEEEccCcH
Confidence 589999999998888887774431 146899999999654332 2234444433222 2368999999984
No 81
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=97.46 E-value=0.00022 Score=71.01 Aligned_cols=67 Identities=15% Similarity=0.350 Sum_probs=45.3
Q ss_pred EEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCC
Q 007415 7 LLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVG 76 (604)
Q Consensus 7 Lv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~ 76 (604)
+|+||+||+++.+...++.+.. .+.|.+|++||++....... +..+++......+.+++++.||||.
T Consensus 1 ~~igDiHg~~~~l~~~l~~~~~--~~~d~li~lGD~vdrg~~~~-~~l~~l~~~~~~~~~~~~l~GNHe~ 67 (225)
T cd00144 1 YVIGDIHGCLDDLLRLLEKIGF--PPNDKLIFLGDYVDRGPDSV-EVIDLLLALKILPDNVILLRGNHED 67 (225)
T ss_pred CEEeCCCCCHHHHHHHHHHhCC--CCCCEEEEECCEeCCCCCcH-HHHHHHHHhcCCCCcEEEEccCchh
Confidence 4899999999887766665543 24699999999976433322 2333332212126789999999985
No 82
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=97.45 E-value=0.00023 Score=70.61 Aligned_cols=69 Identities=13% Similarity=0.184 Sum_probs=46.3
Q ss_pred EEEcCCCCCHHHHHHHHHHHHhh------cCCCcEEEEecCCCCCChhhHHHHHHHhcc----cCCCCCcEEEEcCCCCC
Q 007415 7 LLCGDVLGRLNQLFKRVQSVNKS------AGPFDAVLCVGQFFPDSSELLDEFMNYVEG----RSEIPIPTYFIGDYGVG 76 (604)
Q Consensus 7 Lv~GDvhG~~~~l~~kv~~l~~k------~GpfD~vi~~GDff~~~~~~~~~~~~~l~g----~~~~p~ptyfv~GNh~~ 76 (604)
+|+||+||+++.+.+.++.+.-- ..+.|.++++||++.-.+... ++.+++.. ..+.+.+++++.||||.
T Consensus 1 ~vi~DIHG~~~~l~~ll~~~~~~~~~~~~~~~~d~lv~lGD~vdrG~~~~-~vl~~l~~l~~~~~~~~~~v~~l~GNHE~ 79 (208)
T cd07425 1 VAIGDLHGDLDAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRGPDVI-EILWLLYKLEQEAAKAGGKVHFLLGNHEL 79 (208)
T ss_pred CEEeCccCCHHHHHHHHHHCCCCCccccccCCCcEEEEECCCcCCCcCHH-HHHHHHHHHHHHHHhcCCeEEEeeCCCcH
Confidence 48999999999887777654310 135799999999976543322 23333322 12346789999999984
No 83
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=97.36 E-value=0.0035 Score=63.61 Aligned_cols=112 Identities=11% Similarity=0.033 Sum_probs=67.1
Q ss_pred CEEEEEcCCCCCH---------HHHHHHHHHHHhhcCCCcEEEEecCCCCCChhh----HHHHHHHhcccCCCCCcEEEE
Q 007415 4 PRILLCGDVLGRL---------NQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSEL----LDEFMNYVEGRSEIPIPTYFI 70 (604)
Q Consensus 4 ~KILv~GDvhG~~---------~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~----~~~~~~~l~g~~~~p~ptyfv 70 (604)
++||.++|+||.+ ..+...++++++.+ +-.+++..||++...... -..+.+.+ ..++ ..+++
T Consensus 1 l~i~~~sD~hg~~~~~~~~~g~~~l~~~v~~~~~~~-~~~l~v~~GD~~~~~~~~~~~~~~~~~~~l---~~~g-~d~~~ 75 (252)
T cd00845 1 LTILHTNDLHGHFEPAGGVGGAARLATLIKEERAEN-ENTLLLDAGDNFDGSPPSTATKGEANIELM---NALG-YDAVT 75 (252)
T ss_pred CEEEEecccccCccccCCcCCHHHHHHHHHHHHhcC-CCeEEEeCCccCCCccchhccCCcHHHHHH---HhcC-CCEEe
Confidence 4899999999876 45555566655543 434889999997642211 01123333 2333 46788
Q ss_pred cCCCCChH--H-HHHHHhccccccCcccCCceecCCEEEcC---------CCCeEEEcCcEEEEEecccC
Q 007415 71 GDYGVGAA--K-VLLAASKNSANQGFKMDGFKVTDNLFWLK---------GSGNFTLHGLSVAYLSGRQS 128 (604)
Q Consensus 71 ~GNh~~~~--~-~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg---------~~gv~~~~GlrIa~lgG~~~ 128 (604)
.|||+... + +.+.+.. .+...++.|+.+-+ ...+++++|++|+.+|-...
T Consensus 76 ~GNHe~d~g~~~l~~~~~~--------~~~~~l~aNv~~~~~~~~~~~~~~~~i~~~~g~kIgiiG~~~~ 137 (252)
T cd00845 76 IGNHEFDYGLDALAELYKD--------ANFPVLSANLYDKDTGTGPPWAKPYKIIEVDGVKIGVIGLTTP 137 (252)
T ss_pred eccccccccHHHHHHHHHh--------CCCCEEEEeeeccCCCCCCCCcCCeEEEEECCEEEEEEEeccc
Confidence 89999642 1 2233321 12345677876543 12356789999999997644
No 84
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=97.29 E-value=0.0026 Score=62.24 Aligned_cols=35 Identities=9% Similarity=0.187 Sum_probs=28.9
Q ss_pred EEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCC
Q 007415 157 LFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGV 209 (604)
Q Consensus 157 ILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~ 209 (604)
|+|||.++... +.+.+.+++.+++|...|+||.|.
T Consensus 112 i~lsH~P~~~~------------------~~~~~~~~~~~~~p~~Ifs~H~H~ 146 (195)
T cd08166 112 IMLSHVPLLAE------------------GGQALKHVVTDLDPDLIFSAHRHK 146 (195)
T ss_pred eeeeccccccc------------------ccHHHHHHHHhcCceEEEEcCccc
Confidence 99999987642 333788999999999999999765
No 85
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=97.28 E-value=0.0014 Score=66.58 Aligned_cols=108 Identities=15% Similarity=0.223 Sum_probs=61.8
Q ss_pred EEEcCCC--CCH--HHHHHHHHH-HHhhcC---CCcEEEEecCCCCCCh---------------hhHHHHHHHhcccCCC
Q 007415 7 LLCGDVL--GRL--NQLFKRVQS-VNKSAG---PFDAVLCVGQFFPDSS---------------ELLDEFMNYVEGRSEI 63 (604)
Q Consensus 7 Lv~GDvh--G~~--~~l~~kv~~-l~~k~G---pfD~vi~~GDff~~~~---------------~~~~~~~~~l~g~~~~ 63 (604)
++++|+| +.. ...++.+.+ ++.... .+|+||++||++.... .....+.+++.... .
T Consensus 2 ~~iSDlHl~~~~~~~~~~~~l~~~l~~~~~~~~~~d~lvi~GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~ 80 (243)
T cd07386 2 VFISDVHVGSKTFLEDAFEKFVRWLNGEDDSASRVKYLIIAGDLVDGIGVYPGQEEELEILDIYEQYEEAAEYLSDVP-S 80 (243)
T ss_pred EEecccCCCchhhhHHHHHHHHHHHcCCcccccCccEEEEeCCcccccccCCcchhhhhhhhHHHHHHHHHHHHHhcc-c
Confidence 6889999 321 122222222 222111 4799999999986410 11233555654332 3
Q ss_pred CCcEEEEcCCCCChHHHH------HHHhccccccCcccCCcee-cCCEEEcCCCCeEEEcCcEEEEEeccc
Q 007415 64 PIPTYFIGDYGVGAAKVL------LAASKNSANQGFKMDGFKV-TDNLFWLKGSGNFTLHGLSVAYLSGRQ 127 (604)
Q Consensus 64 p~ptyfv~GNh~~~~~~l------~~l~~~~~~~~~~~~g~ei-~~Nl~~Lg~~gv~~~~GlrIa~lgG~~ 127 (604)
.+|+|+++||||-....+ ..+. ..+ ..|+.++.....++++|.+|.+..|..
T Consensus 81 ~~~v~~ipGNHD~~~~~~pq~~l~~~l~------------~~~~~~~v~~l~Np~~~~~~g~~i~~~~G~~ 139 (243)
T cd07386 81 HIKIIIIPGNHDAVRQAEPQPALPEEIR------------KLFLPGNVEFVSNPALVKIHGVDVLIYHGRS 139 (243)
T ss_pred CCeEEEeCCCCCcccccCCCCCccHHHH------------hhcCCCceEEeCCCCEEEECCEEEEEECCCC
Confidence 589999999998521110 1110 001 257777766556788999999888864
No 86
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=97.26 E-value=0.022 Score=58.58 Aligned_cols=199 Identities=13% Similarity=0.073 Sum_probs=102.1
Q ss_pred CEEEEEcCCCCCHHH----------------------HHHHHHHHHhhcCCCcEEE-EecCCCCCChhh-H---HHHHHH
Q 007415 4 PRILLCGDVLGRLNQ----------------------LFKRVQSVNKSAGPFDAVL-CVGQFFPDSSEL-L---DEFMNY 56 (604)
Q Consensus 4 ~KILv~GDvhG~~~~----------------------l~~kv~~l~~k~GpfD~vi-~~GDff~~~~~~-~---~~~~~~ 56 (604)
..||.++|+||.+.. +...++++.+.. ..|+|+ -+||++...... . ..+.+.
T Consensus 1 l~il~t~D~Hg~~~~~~~~~~~~~~~~~~~~~gG~~r~~~~v~~~~~~~-~~~~l~l~~GD~~~gs~~~~~~~g~~~~~~ 79 (264)
T cd07411 1 LTLLHINDLHGQLIPHYELEPSNLLARVFGMAGGFAHIATLIKRIRAER-NPNTLLLDGGDTWQGSGEALYTRGQAMVDA 79 (264)
T ss_pred CEEEEEcccccCccccccccccccccccccccCcHHHHHHHHHHHHHhc-CCCeEEEeCCCccCCChHHhhcCChhHHHH
Confidence 369999999997543 223333333331 357775 599998653211 0 112233
Q ss_pred hcccCCCCCcEEEEcCCCCChH--H-HHHHHhccccccCcccCCceecCCEEEcCC-------CCeEEEcCcEEEEEecc
Q 007415 57 VEGRSEIPIPTYFIGDYGVGAA--K-VLLAASKNSANQGFKMDGFKVTDNLFWLKG-------SGNFTLHGLSVAYLSGR 126 (604)
Q Consensus 57 l~g~~~~p~ptyfv~GNh~~~~--~-~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~-------~gv~~~~GlrIa~lgG~ 126 (604)
+ .. +..+++.||||-.. . +...+.. .+-..++.|+.+-.. .-+++.+|+||+.+|=+
T Consensus 80 l---~~--~g~da~~GNHefd~g~~~l~~~~~~--------~~~~~l~aN~~~~~~~~~~~~~~~i~~~~g~kVgviG~~ 146 (264)
T cd07411 80 L---NA--LGVDAMVGHWEFTYGPERVRELFGR--------LNWPFLAANVYDDEAGERVFPPYRIKEVGGVKIGVIGQT 146 (264)
T ss_pred H---Hh--hCCeEEecccccccCHHHHHHHHhh--------CCCCEEEEEEEeCCCCCcccCCEEEEEECCEEEEEEEec
Confidence 3 33 34444449999652 2 2222221 123467888876431 23446799999999987
Q ss_pred cCCCCCC-------CCCCCH--HHHHHH-HHhhcCCCCccE--EEeCCCCccccccccccccccCcCCCCCCcHHHHHHH
Q 007415 127 QSSEGQQ-------FGTYSQ--DDVDAL-RALAEEPGIVDL--FLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELV 194 (604)
Q Consensus 127 ~~~~~~~-------~~~~te--~d~~~L-~~l~~~~~~vDI--LLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~ 194 (604)
....... ...++. +.+.++ ..+. ...++|+ +|+|..... -.+++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~iI~l~H~g~~~-----------------------~~~la 202 (264)
T cd07411 147 FPYVPIANPPRFTPGLTFGIREEELQEVVVKLR-REEGVDVVVLLSHNGLPV-----------------------DVELA 202 (264)
T ss_pred cCCcccccCcCCCCCcEECCHHHHHHHHHHHHH-HhCCCCEEEEEecCCchh-----------------------hHHHH
Confidence 5421110 012221 222222 2221 1234564 666653210 01233
Q ss_pred HHh-CCCEEEEccCCCcccccccccCCCcceeEEEEcCCCCCcccceeEEEeccCC
Q 007415 195 AEI-KPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKEKQKFIHALSPTP 249 (604)
Q Consensus 195 ~~l-kPrYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~~~gn~~K~Kw~yAf~i~p 249 (604)
+++ ..-..+.||.|..+. .|+. ....|.++.-|..+. ++--++|+.
T Consensus 203 ~~~~~iDlilgGH~H~~~~-~~~~---~~~~t~v~~~g~~~~-----~vg~i~l~~ 249 (264)
T cd07411 203 ERVPGIDVILSGHTHERTP-KPII---AGGGTLVVEAGSHGK-----FLGRLDLDV 249 (264)
T ss_pred hcCCCCcEEEeCccccccc-Cccc---ccCCEEEEEcCcccc-----EEEEEEEEE
Confidence 332 234688999886543 2321 233578888877664 777777664
No 87
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=97.21 E-value=0.0051 Score=62.98 Aligned_cols=110 Identities=15% Similarity=0.077 Sum_probs=65.7
Q ss_pred CEEEEEcCCCCCHH----------HHHHHHHHHHhhcCCCcEEEEecCCCCCChhh----HHHHHHHhcccCCCCCcEEE
Q 007415 4 PRILLCGDVLGRLN----------QLFKRVQSVNKSAGPFDAVLCVGQFFPDSSEL----LDEFMNYVEGRSEIPIPTYF 69 (604)
Q Consensus 4 ~KILv~GDvhG~~~----------~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~----~~~~~~~l~g~~~~p~ptyf 69 (604)
++||.++|+||.+. .+-..++++.++ +-+++|-+||++...... ...+.+.+ ..+++.. +
T Consensus 1 i~il~~~D~H~~~~~~~~~~~g~~~l~~~i~~~~~~--~~~l~l~~GD~~~gs~~~~~~~g~~~~~~l---n~~g~d~-~ 74 (257)
T cd07408 1 ITILHTNDIHGRIDEDDNNGIGYAKLATYKKEMNKL--DNDLLVDAGDAIQGLPISDLDKGETIIKIM---NAVGYDA-V 74 (257)
T ss_pred CEEEEeccCcccccCCCCccccHHHHHHHHHHHHhc--CCEEEEeCCCcCCCchhhhhcCCcHHHHHH---HhcCCcE-E
Confidence 47999999999753 344444444433 568999999997652210 01122333 3344444 6
Q ss_pred EcCCCCChH--HHHH-HHhccccccCcccCCceecCCEEEcC-------CCCeEEEc-CcEEEEEeccc
Q 007415 70 IGDYGVGAA--KVLL-AASKNSANQGFKMDGFKVTDNLFWLK-------GSGNFTLH-GLSVAYLSGRQ 127 (604)
Q Consensus 70 v~GNh~~~~--~~l~-~l~~~~~~~~~~~~g~ei~~Nl~~Lg-------~~gv~~~~-GlrIa~lgG~~ 127 (604)
+.||||... +.+. .+.. .+...++.|+.... ..-+++.+ |+||+.+|-..
T Consensus 75 ~~GNHefd~G~~~l~~~~~~--------~~~~~l~aNv~~~~~~~~~~~py~i~~~~~G~kIgviG~~~ 135 (257)
T cd07408 75 TPGNHEFDYGLDRLKELSKE--------ADFPFLSANVYDNDTGKRVFKPYKIKELGNGVKVGVIGLTT 135 (257)
T ss_pred ccccccccCCHHHHHHHHhh--------CCCCEEEEEEEEcCCCCcccCCEEEEEcCCCCEEEEEeecC
Confidence 779999642 2222 2221 22346888887653 12344677 99999999764
No 88
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=97.12 E-value=0.041 Score=56.37 Aligned_cols=112 Identities=15% Similarity=0.072 Sum_probs=67.5
Q ss_pred CEEEEEcCCCC----------CHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChh----hHHHHHHHhcccCCCCCcEEE
Q 007415 4 PRILLCGDVLG----------RLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSE----LLDEFMNYVEGRSEIPIPTYF 69 (604)
Q Consensus 4 ~KILv~GDvhG----------~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~----~~~~~~~~l~g~~~~p~ptyf 69 (604)
.+||.+.|+|+ .+..+...++++.+.+ |-.++|.+||++..... .-..+.+.+ ..++. .++
T Consensus 1 ~~il~~nd~~~~~~~~~~~~gG~~rl~~~i~~~r~~~-~~~l~l~~GD~~~g~~~~~~~~g~~~~~~l---~~l~~-d~~ 75 (257)
T cd07406 1 FTILHFNDVYEIAPLDGGPVGGAARFATLRKQLRKEN-PNTLVLFSGDVLSPSLLSTATKGKQMVPVL---NALGV-DLA 75 (257)
T ss_pred CeEEEEccceeecccCCCCcCCHHHHHHHHHHHHhcC-CCEEEEECCCccCCccchhhcCCccHHHHH---HhcCC-cEE
Confidence 36899999993 3566666666665543 43499999999764211 001123333 23333 477
Q ss_pred EcCCCCChH--HHHHH-HhccccccCcccCCceecCCEEEcCC---------CCeEEEcCcEEEEEecccC
Q 007415 70 IGDYGVGAA--KVLLA-ASKNSANQGFKMDGFKVTDNLFWLKG---------SGNFTLHGLSVAYLSGRQS 128 (604)
Q Consensus 70 v~GNh~~~~--~~l~~-l~~~~~~~~~~~~g~ei~~Nl~~Lg~---------~gv~~~~GlrIa~lgG~~~ 128 (604)
+.||||... +.+.. +.. .+...++.|+.+-.. ..+++.+|+||+.+|=..+
T Consensus 76 ~~GNHefd~g~~~l~~~~~~--------~~~~~L~aNi~~~~~~~~~~~~~~~~i~~~~g~kIgviG~~~~ 138 (257)
T cd07406 76 CFGNHEFDFGEDQLQKRLGE--------SKFPWLSSNVFDATGGGPLPNGKESAIIERAGVKIGLLGLVEE 138 (257)
T ss_pred eecccccccCHHHHHHHHhh--------CCCCEEEEEEEECCCCcccCCCCCeEEEEECCeEEEEEEEecc
Confidence 899999642 22322 321 223567888876442 2455679999999997654
No 89
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.07 E-value=0.015 Score=71.77 Aligned_cols=204 Identities=15% Similarity=0.091 Sum_probs=104.4
Q ss_pred CCEEEEEcCCCCCH---HHHHHHHHHHHhhcCCCcEEEE-ecCCCCCChhh----HHHHHHHhcccCCCCCcEEEEcCCC
Q 007415 3 PPRILLCGDVLGRL---NQLFKRVQSVNKSAGPFDAVLC-VGQFFPDSSEL----LDEFMNYVEGRSEIPIPTYFIGDYG 74 (604)
Q Consensus 3 ~~KILv~GDvhG~~---~~l~~kv~~l~~k~GpfD~vi~-~GDff~~~~~~----~~~~~~~l~g~~~~p~ptyfv~GNh 74 (604)
.++||.++|+||.+ ..+...++++.+++ .|+|++ +||+|...... -....+.+ ..+++ -+++.|||
T Consensus 660 ~l~Il~~nD~Hg~l~g~~r~~~~i~~~r~~~--~~~l~ld~GD~~~gs~~~~~~~g~~~~~~l---n~lg~-d~~~~GNH 733 (1163)
T PRK09419 660 ELTILHTNDFHGHLDGAAKRVTKIKEVKEEN--PNTILVDAGDVYQGSLYSNLLKGLPVLKMM---KEMGY-DASTFGNH 733 (1163)
T ss_pred EEEEEEEeecccCCCCHHHHHHHHHHHHhhC--CCeEEEecCCCCCCcchhhhcCChHHHHHH---hCcCC-CEEEeccc
Confidence 37899999999874 45555555554443 477766 99987653210 01122333 23333 36699999
Q ss_pred CCh---HHHHHHHhccc---cccCcc-cCCceecCCEEEcC---------CCCeEEEcCcEEEEEecccCC-CCC-----
Q 007415 75 VGA---AKVLLAASKNS---ANQGFK-MDGFKVTDNLFWLK---------GSGNFTLHGLSVAYLSGRQSS-EGQ----- 132 (604)
Q Consensus 75 ~~~---~~~l~~l~~~~---~~~~~~-~~g~ei~~Nl~~Lg---------~~gv~~~~GlrIa~lgG~~~~-~~~----- 132 (604)
|.. ..+...+.... ....|. .+-..++.|+++-. ..-|++++|+||+.+|=.... ...
T Consensus 734 Efd~g~~~l~~~l~~~~~~~~~~~~~~~~fp~l~aNv~~~~~~~~~~~~~py~I~e~~G~kIgiiGltt~~~~~~~~p~~ 813 (1163)
T PRK09419 734 EFDWGPDVLPDWLKGGGDPKNRHQFEKPDFPFVASNIYVKKTGKLVSWAKPYILVEVNGKKVGFIGLTTPETAYKTSPGN 813 (1163)
T ss_pred ccccChHHHHHHHHhcccccccccccCCCCCEEEEEEEeCCCCccccccCCEEEEEECCEEEEEEEecccccccccCCCC
Confidence 943 22333333110 000000 01246888887532 234456799999999976431 110
Q ss_pred -CCCCCCHHHHHHHHHh---hcCCCCcc--EEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHh-CCCEEEEc
Q 007415 133 -QFGTYSQDDVDALRAL---AEEPGIVD--LFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEI-KPRYHIAG 205 (604)
Q Consensus 133 -~~~~~te~d~~~L~~l---~~~~~~vD--ILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~l-kPrYhf~G 205 (604)
....|++. ++++.+. .+...++| |+|||.--.. +. ..+.-.+.+|++++ .--..+.|
T Consensus 814 ~~~l~f~d~-~e~~~~~v~~Lr~~~~~D~VV~LsH~G~~~-----d~----------~~~~~~~~~lA~~v~gIDvIigG 877 (1163)
T PRK09419 814 VKNLEFKDP-AEAAKKWVKELKEKEKVDAIIALTHLGSNQ-----DR----------TTGEITGLELAKKVKGVDAIISA 877 (1163)
T ss_pred cCCcEEcCH-HHHHHHHHHHHHhhcCCCEEEEEecCCccc-----cc----------cccccHHHHHHHhCCCCCEEEeC
Confidence 01233322 2222221 11124566 5888874321 10 01112345666655 34578899
Q ss_pred cCCCcccccccccCCCcceeEEEEcCCCCC
Q 007415 206 SKGVFYAREPYSNVDAVHVTRFLGLAPVGN 235 (604)
Q Consensus 206 h~~~fyEr~Py~~~~~~~~TRFI~L~~~gn 235 (604)
|.|..+... ...|-.+.-|.+|.
T Consensus 878 HsH~~~~~~-------v~~~~ivqag~~g~ 900 (1163)
T PRK09419 878 HTHTLVDKV-------VNGTPVVQAYKYGR 900 (1163)
T ss_pred CCCcccccc-------CCCEEEEeCChhHc
Confidence 988765421 12355666555553
No 90
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=97.05 E-value=0.039 Score=57.31 Aligned_cols=111 Identities=13% Similarity=0.028 Sum_probs=63.2
Q ss_pred CEEEEEcCCCCCH---------------------HHHHHHHHHHHhhcCCCcEEEEecCCCCCChh----hHHHHHHHhc
Q 007415 4 PRILLCGDVLGRL---------------------NQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSE----LLDEFMNYVE 58 (604)
Q Consensus 4 ~KILv~GDvhG~~---------------------~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~----~~~~~~~~l~ 58 (604)
++||.++|+||++ ..+...++++.++. +--+++-+||++..... .-....+.+
T Consensus 1 l~il~tnD~Hg~l~~~~~~~~~~~~~~~~~~gG~ar~~~~v~~~r~~~-~~~l~ld~GD~~~gs~~~~~~~g~~~~~~l- 78 (281)
T cd07409 1 LTILHTNDHHSRFEETNPSGGVKDAATEKCYGGFARVATLVKELRAEN-PNVLFLNAGDAFQGTLWYTLYKGNADAEFM- 78 (281)
T ss_pred CEEEEeccccccccccCccccccccccccccCCHHHHHHHHHHHHhcC-CCEEEEeCCCCCCCcchhhhcCChHHHHHH-
Confidence 4799999999875 44445555554443 33355669998754211 001122333
Q ss_pred ccCCCCCcEEEEcCCCCChH--HHH-HHHhccccccCcccCCceecCCEEEcCC----------CCeEEEcCcEEEEEec
Q 007415 59 GRSEIPIPTYFIGDYGVGAA--KVL-LAASKNSANQGFKMDGFKVTDNLFWLKG----------SGNFTLHGLSVAYLSG 125 (604)
Q Consensus 59 g~~~~p~ptyfv~GNh~~~~--~~l-~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~----------~gv~~~~GlrIa~lgG 125 (604)
..+++.. ++.||||... +.+ +.+.. .....++.|+..-.. ..+++.+|+||+.+|=
T Consensus 79 --n~~g~D~-~~lGNHefd~G~~~l~~~~~~--------~~~p~l~aNv~~~~~~~~~~~~~~p~~i~~~~G~kIgviG~ 147 (281)
T cd07409 79 --NLLGYDA-MTLGNHEFDDGVEGLAPFLNN--------LKFPVLSANIDTSNEPPLLDGLLKPSTILTVGGEKIGIIGY 147 (281)
T ss_pred --HhcCCCE-EEeccccccCCHHHHHHHHHh--------CCCCEEEEeeecCCCccccccccCCeEEEEECCEEEEEEEE
Confidence 3455654 4558999652 122 22221 123457778765331 2455789999999996
Q ss_pred cc
Q 007415 126 RQ 127 (604)
Q Consensus 126 ~~ 127 (604)
..
T Consensus 148 ~~ 149 (281)
T cd07409 148 TT 149 (281)
T ss_pred ec
Confidence 64
No 91
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=97.02 E-value=0.0093 Score=67.82 Aligned_cols=110 Identities=15% Similarity=0.053 Sum_probs=63.4
Q ss_pred CEEEEEcCCCCCHHH---------------------HHHHHHHHHhhcCCCcEEEEecCCCCCChhh---H-HHHHHHhc
Q 007415 4 PRILLCGDVLGRLNQ---------------------LFKRVQSVNKSAGPFDAVLCVGQFFPDSSEL---L-DEFMNYVE 58 (604)
Q Consensus 4 ~KILv~GDvhG~~~~---------------------l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~---~-~~~~~~l~ 58 (604)
+.||.+.|+||++.. +...++++.+++ +--++|-+||+|...... . ....+.++
T Consensus 1 ltILhtND~Hg~l~~~~~~~~~~~~~~~~~~gG~a~l~~~i~~~r~~~-~n~l~ldaGD~~~gs~~~~~~~g~~~i~~~N 79 (550)
T TIGR01530 1 LSIIHINDHHSHLEPEELEIALAGEQLKAAIGGFAALNAEINKLRAES-KNALVLHAGDAIIGTLYFTLFGGRADAALMN 79 (550)
T ss_pred CEEEEEccccccccCcccccccCCCccccccCCHHHHHHHHHHHHhhC-CCeEEEECCCCCCCccchhhcCCHHHHHHHh
Confidence 369999999998643 223344443333 557899999987652210 0 00122321
Q ss_pred ccCCCCCcEEEEcCCCCChH--HHHHH-HhccccccCcccCCceecCCEEEc---------CCCCeEEEcCcEEEEEecc
Q 007415 59 GRSEIPIPTYFIGDYGVGAA--KVLLA-ASKNSANQGFKMDGFKVTDNLFWL---------KGSGNFTLHGLSVAYLSGR 126 (604)
Q Consensus 59 g~~~~p~ptyfv~GNh~~~~--~~l~~-l~~~~~~~~~~~~g~ei~~Nl~~L---------g~~gv~~~~GlrIa~lgG~ 126 (604)
.+++ -+.+.||||-.. +.+.. +.. ..-.+++.|+.+- ...-|++++|++|+.+|=.
T Consensus 80 ---~~g~-Da~~lGNHEFd~G~~~l~~~~~~--------~~fp~l~aNv~~~~~~~~~~~~~p~~i~~~~g~kIgiiGl~ 147 (550)
T TIGR01530 80 ---AAGF-DFFTLGNHEFDAGNEGLKEFLEP--------LEIPVLSANVIPDAASILHGKWKPSAIFERAGEKIAIIGLD 147 (550)
T ss_pred ---ccCC-CEEEeccccccCCHHHHHHHHHh--------CCCCEEEEeeecCCCcccccCcCceEEEEECCeEEEEEEee
Confidence 2222 378899999652 22332 221 1234688888643 2234556899999999975
No 92
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=96.94 E-value=0.056 Score=56.30 Aligned_cols=114 Identities=18% Similarity=0.106 Sum_probs=63.6
Q ss_pred CEEEEEcCCCCCHHH----------HHHHHHHHHhh---cCCCcEEEEecCCCCCChhh-H---HHHHHHhcccCCCCCc
Q 007415 4 PRILLCGDVLGRLNQ----------LFKRVQSVNKS---AGPFDAVLCVGQFFPDSSEL-L---DEFMNYVEGRSEIPIP 66 (604)
Q Consensus 4 ~KILv~GDvhG~~~~----------l~~kv~~l~~k---~GpfD~vi~~GDff~~~~~~-~---~~~~~~l~g~~~~p~p 66 (604)
+.||.++|+||++.. +-..++.+.++ .++--++|-+||++...... . .-..+.+ ..+++-
T Consensus 1 ltIl~tnD~Hg~l~~~~~~~gG~ar~a~~i~~~r~~~~~~~~~~l~ld~GD~~~Gs~~~~~~~g~~~~~~~---n~~g~D 77 (285)
T cd07405 1 ITILHTNDHHGHFWPNGTGEYGLAAQKTLVDGVRREVAAQGGYVLLLSGGDINTGVPESDLQDAEPDFRGM---NLVGYD 77 (285)
T ss_pred CEEEEEcccccccccCCCCCccHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCchhHHhcCcchHHHHH---HhhCCc
Confidence 469999999998533 23333333322 25567899999987532110 0 0011222 234444
Q ss_pred EEEEcCCCCChH--HHHHHHhccccccCcccCCceecCCEEEcC------CCCeEEEcCcEEEEEecccC
Q 007415 67 TYFIGDYGVGAA--KVLLAASKNSANQGFKMDGFKVTDNLFWLK------GSGNFTLHGLSVAYLSGRQS 128 (604)
Q Consensus 67 tyfv~GNh~~~~--~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg------~~gv~~~~GlrIa~lgG~~~ 128 (604)
.. +.||||... +.+..+... ..-..++.|+++-. ..-+++++|+|||.+|=...
T Consensus 78 a~-~~GNHEfD~G~~~L~~~~~~-------~~fp~l~aNv~~~~g~~~~~p~~i~~~~G~kIgviG~t~~ 139 (285)
T cd07405 78 AM-AVGNHEFDNPLEVLRQQMKW-------ANFPLLSANIYQESGERLFKPYALFDLGGLKIAVIGLTTD 139 (285)
T ss_pred EE-eecccccccCHHHHHHHHhh-------CCCCEEEEEEEecCCCCccCCeEEEEECCEEEEEEEeccc
Confidence 44 559999652 233322111 12246888987642 12344679999999987643
No 93
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=96.91 E-value=0.049 Score=58.91 Aligned_cols=213 Identities=11% Similarity=0.041 Sum_probs=107.0
Q ss_pred CCEEEEEcCCCCCHH---HHHHHHHHHHhhcCCCcEEEEecCCCCCC------hhhHHHHHHHhcccC-CCCCcEEEEcC
Q 007415 3 PPRILLCGDVLGRLN---QLFKRVQSVNKSAGPFDAVLCVGQFFPDS------SELLDEFMNYVEGRS-EIPIPTYFIGD 72 (604)
Q Consensus 3 ~~KILv~GDvhG~~~---~l~~kv~~l~~k~GpfD~vi~~GDff~~~------~~~~~~~~~~l~g~~-~~p~ptyfv~G 72 (604)
+++++++||.-+.-. .+-+.+.++.++. ++|+||-+||-|..+ +.-...|++.++... .+.+|-|.|.|
T Consensus 26 ~l~F~~vGDwG~g~~~Q~~VA~~M~~~~~~~-~~~FVls~GDNF~~Gv~sv~Dp~f~~~FE~vY~~~s~~L~~Pwy~vLG 104 (394)
T PTZ00422 26 QLRFASLGNWGTGSKQQKLVASYLKQYAKNE-RVTFLVSPGSNFPGGVDGLNDPKWKHCFENVYSEESGDMQIPFFTVLG 104 (394)
T ss_pred eEEEEEEecCCCCchhHHHHHHHHHHHHHhC-CCCEEEECCccccCCCCCccchhHHhhHhhhccCcchhhCCCeEEeCC
Confidence 468999999654221 2223344444444 699999999977321 112223555554432 26789999999
Q ss_pred CCCChHHHHHHHhcccc-------------ccCcccCCceecCCEEEcCCCCeEE--------E--cCc--EEEEEeccc
Q 007415 73 YGVGAAKVLLAASKNSA-------------NQGFKMDGFKVTDNLFWLKGSGNFT--------L--HGL--SVAYLSGRQ 127 (604)
Q Consensus 73 Nh~~~~~~l~~l~~~~~-------------~~~~~~~g~ei~~Nl~~Lg~~gv~~--------~--~Gl--rIa~lgG~~ 127 (604)
|||-.-+...++..... ...-.....|.+||-+|--...... . .+. .+.++--..
T Consensus 105 NHDy~Gn~~AQi~r~~~~y~~~~~~~~~~y~~~~~~~~RW~mP~~yY~~~~~f~~~~~~~~~~~~~~~~~v~fifiDT~~ 184 (394)
T PTZ00422 105 QADWDGNYNAELLKGQNVYLNGHGQTDIEYDSNNDIYPKWIMPNYWYHYFTHFTDTSGPSLLKSGHKDMSVAFIFIDTWI 184 (394)
T ss_pred cccccCCchhhhccccccccccccccccccccccccCCCccCCchhheeeeeeecccccccccccCCCCEEEEEEEECch
Confidence 99843223333310000 0000012467788866532100000 0 111 222221110
Q ss_pred CCCCCCCCCCCHHHHHHHHH-h--hcCCCCccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEE
Q 007415 128 SSEGQQFGTYSQDDVDALRA-L--AEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIA 204 (604)
Q Consensus 128 ~~~~~~~~~~te~d~~~L~~-l--~~~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~ 204 (604)
..........++.+.+-|.+ | +.....-=|++-|-|-.......+. ..-...+..|+++.+-.+.|+
T Consensus 185 l~~~~~~~~~~~~~w~~L~~~L~~a~k~a~WkIVvGHhPIySsG~hg~~----------~~L~~~L~PLL~ky~VdlYis 254 (394)
T PTZ00422 185 LSSSFPYKKVSERAWQDLKATLEYAPKIADYIIVVGDKPIYSSGSSKGD----------SYLSYYLLPLLKDAQVDLYIS 254 (394)
T ss_pred hcccCCccccCHHHHHHHHHHHHhhccCCCeEEEEecCceeecCCCCCC----------HHHHHHHHHHHHHcCcCEEEE
Confidence 00000001123444443332 2 2112334578889888876432110 112236778999999999999
Q ss_pred ccCCCcccccccccCCCcceeEEEEcCCC
Q 007415 205 GSKGVFYAREPYSNVDAVHVTRFLGLAPV 233 (604)
Q Consensus 205 Gh~~~fyEr~Py~~~~~~~~TRFI~L~~~ 233 (604)
||.|.+ |+.. ...|.||.-|.-
T Consensus 255 GHDH~l-q~i~------~~gt~yIvSGaG 276 (394)
T PTZ00422 255 GYDRNM-EVLT------DEGTAHINCGSG 276 (394)
T ss_pred ccccce-EEec------CCCceEEEeCcc
Confidence 998754 5431 224778876663
No 94
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=96.84 E-value=0.028 Score=53.62 Aligned_cols=147 Identities=19% Similarity=0.233 Sum_probs=87.8
Q ss_pred hhcCCCcEEEEecCC-CCC-ChhhHHHHHHHhcccCCCCCcEEEEcCCCCChHHHHHHHhccccccCcccCCceecCCEE
Q 007415 28 KSAGPFDAVLCVGQF-FPD-SSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLF 105 (604)
Q Consensus 28 ~k~GpfD~vi~~GDf-f~~-~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~ 105 (604)
.+-.|-|.|++.||+ ..- -+++.++| .++ ..+|-.-|.+-|||+--..-..+|.+ -+.+-++
T Consensus 39 ~~v~~eDiVllpGDiSWaM~l~ea~~Dl-~~i---~~LPG~K~m~rGNHDYWw~s~skl~n------------~lp~~l~ 102 (230)
T COG1768 39 SKVSPEDIVLLPGDISWAMRLEEAEEDL-RFI---GDLPGTKYMIRGNHDYWWSSISKLNN------------ALPPILF 102 (230)
T ss_pred hcCChhhEEEecccchhheechhhhhhh-hhh---hcCCCcEEEEecCCccccchHHHHHh------------hcCchHh
Confidence 344477999999998 222 12222233 344 45677789999999843222333321 1345678
Q ss_pred EcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHH-------HH--hhcCCCCcc--EEEeCCCCcccccccccc
Q 007415 106 WLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDAL-------RA--LAEEPGIVD--LFLTNEWPSGVTNKAAAS 174 (604)
Q Consensus 106 ~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L-------~~--l~~~~~~vD--ILLTh~wP~gi~~~~~~~ 174 (604)
||+. + +.+..+-|+|.-|-.+.+.. +..+|++|-+.+ +- .+....+++ |+.||-+|..=.
T Consensus 103 ~~n~-~-f~l~n~aI~G~RgW~s~~~~-~e~~te~Deki~~RE~~RLrlsa~a~l~k~~~~fivM~HYPP~s~~------ 173 (230)
T COG1768 103 YLNN-G-FELLNYAIVGVRGWDSPSFD-SEPLTEQDEKIFLREIGRLRLSADAALPKGVSKFIVMTHYPPFSDD------ 173 (230)
T ss_pred hhcc-c-eeEeeEEEEEeecccCCCCC-cCccchhHHHHHHHHHHHHHHHHHHhcccCcCeEEEEEecCCCCCC------
Confidence 8874 3 34545777777676554432 345888775532 21 112233444 688999997421
Q ss_pred ccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCC
Q 007415 175 DMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGV 209 (604)
Q Consensus 175 ~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~ 209 (604)
..++ .+.+++++.|+...+.||.|.
T Consensus 174 ---------~t~~-~~sevlee~rv~~~lyGHlHg 198 (230)
T COG1768 174 ---------GTPG-PFSEVLEEGRVSKCLYGHLHG 198 (230)
T ss_pred ---------CCCc-chHHHHhhcceeeEEeeeccC
Confidence 1122 578899999999999999653
No 95
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=96.76 E-value=0.0031 Score=65.22 Aligned_cols=204 Identities=16% Similarity=0.205 Sum_probs=101.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChHHHHHH
Q 007415 4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLA 83 (604)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~~l~~ 83 (604)
++|.|+||+||++..+...+..+. ..+.+-++++||+..-++...+-+.-++.-....|-.++.+-||||... +..
T Consensus 28 ~~i~vvGDiHG~~~~l~~ll~~~~--~~~~~~~vfLGD~VDrG~~s~e~l~~l~~lk~~~p~~v~llrGNHE~~~--~~~ 103 (271)
T smart00156 28 APVTVCGDIHGQFDDLLRLFDLNG--PPPDTNYVFLGDYVDRGPFSIEVILLLFALKILYPNRVVLLRGNHESRS--MNE 103 (271)
T ss_pred CCEEEEEeCcCCHHHHHHHHHHcC--CCCCceEEEeCCccCCCCChHHHHHHHHHHHhcCCCCEEEEeccccHHH--HHH
Confidence 589999999999998876665432 1246899999999765443333232222212345667899999999632 221
Q ss_pred HhccccccCccc-----CCce----ecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHhhc---C
Q 007415 84 ASKNSANQGFKM-----DGFK----VTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAE---E 151 (604)
Q Consensus 84 l~~~~~~~~~~~-----~g~e----i~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l~~---~ 151 (604)
.. ||.. -+.+ +...+.+|.- ...+++..+..=||..+ .. -+-++++.+..... .
T Consensus 104 ~~------gf~~e~~~~~~~~l~~~~~~~f~~LPl--~aii~~~~~~vHgGi~~-~~-----~~l~~i~~i~r~~~~~~~ 169 (271)
T smart00156 104 IY------GFYDECKRKYGEEIYEKFQEAFSWLPL--AALIDNKILCMHGGLSP-DL-----TTLDDIRKLKRPQEPPDE 169 (271)
T ss_pred hc------cchhhhhhhcCHHHHHHHHHHHhhChh--heEEcCeEEEEecCCCC-cc-----CCHHHHhcccCCCCCCch
Confidence 10 0000 0000 1111122221 01233434444445422 11 13444444432110 0
Q ss_pred CCCccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCC--cccccccccCCCcceeEEEE
Q 007415 152 PGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGV--FYAREPYSNVDAVHVTRFLG 229 (604)
Q Consensus 152 ~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~--fyEr~Py~~~~~~~~TRFI~ 229 (604)
..-.|+|-+- |-........+ +.+. ....|.+++.+++++..=++.+-||+-. .|+.. . +..-+|-|=+
T Consensus 170 ~~~~dllWsD-P~~~~~~~~~~---~Rg~-g~~fg~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~---~-~~~~~TvfSa 240 (271)
T smart00156 170 GLLIDLLWSD-PDQPVDGFQPS---IRGA-SYYFGPDAVDEFLKKNNLKLIIRAHQVVDDGYEFF---H-DRKLVTIFSA 240 (271)
T ss_pred hhhhheeecC-CCcccCCCccC---CCCC-ccccCHHHHHHHHHHCCCeEEEecCcccCCcEEEe---c-CCcEEEEECC
Confidence 1113433322 21111111110 1111 1246899999999999999999999532 44421 2 2455777776
Q ss_pred cCCCC
Q 007415 230 LAPVG 234 (604)
Q Consensus 230 L~~~g 234 (604)
..-++
T Consensus 241 ~~y~~ 245 (271)
T smart00156 241 PNYCG 245 (271)
T ss_pred ccccc
Confidence 55544
No 96
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=96.71 E-value=0.0029 Score=66.80 Aligned_cols=73 Identities=15% Similarity=0.230 Sum_probs=47.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCCh
Q 007415 4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGA 77 (604)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~ 77 (604)
.++.|+||+||++..|...++...... +-+.+|.+||+..-+....+-+.-++.-....|--+|.+-||||..
T Consensus 51 ~~~~vvGDiHG~~~dL~~il~~~g~~~-~~~~~lFLGDyVDRG~~s~Evl~ll~~lk~~~p~~v~llRGNHE~~ 123 (321)
T cd07420 51 KQVTICGDLHGKLDDLFLIFYKNGLPS-PENPYVFNGDFVDRGKRSIEILIILFAFFLVYPNEVHLNRGNHEDH 123 (321)
T ss_pred CCeEEEEeCCCCHHHHHHHHHHcCCCC-ccceEEEeccccCCCCCcHHHHHHHHHHhhcCCCcEEEecCchhhh
Confidence 379999999999998876665321110 1267999999976544433333333322233455688999999964
No 97
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=96.63 E-value=0.0035 Score=63.01 Aligned_cols=68 Identities=12% Similarity=0.111 Sum_probs=45.5
Q ss_pred EEEEEcCCC-CC---------------HHHHHHHHHHHHhhcCCCcEEEEecCCCCCCh--hhHHHHHHHhcccCCCCCc
Q 007415 5 RILLCGDVL-GR---------------LNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS--ELLDEFMNYVEGRSEIPIP 66 (604)
Q Consensus 5 KILv~GDvh-G~---------------~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~--~~~~~~~~~l~g~~~~p~p 66 (604)
+.|+++|+| |. +.++++++.++-++. ++|.||++||++-... ....++.+++. .+..+
T Consensus 16 ~~LvisDlHLG~~~~~~~~Gi~~P~~~~~~~l~rl~~li~~~-~~d~vIi~GDl~h~~~~~~~~~~~~~~l~---~~~~~ 91 (225)
T TIGR00024 16 DKAVIADLHLGFERHLDEQGVMVPGFQFREIIERALSIADKY-GIEALIINGDLKHEFKKGLEWRFIREFIE---VTFRD 91 (225)
T ss_pred CeEEEEeccCCCHHHHHhcCCcCChhHHHHHHHHHHHHHhhc-CCCEEEEcCccccccCChHHHHHHHHHHH---hcCCc
Confidence 689999999 42 123455555554555 4899999999974311 22334556663 34469
Q ss_pred EEEEcCCCCC
Q 007415 67 TYFIGDYGVG 76 (604)
Q Consensus 67 tyfv~GNh~~ 76 (604)
+++|.||||.
T Consensus 92 v~~V~GNHD~ 101 (225)
T TIGR00024 92 LILIRGNHDA 101 (225)
T ss_pred EEEECCCCCC
Confidence 9999999984
No 98
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=96.52 E-value=0.029 Score=58.32 Aligned_cols=119 Identities=12% Similarity=-0.012 Sum_probs=63.8
Q ss_pred CCCEEEEEcCCCCCHH----------------HHHHHHHHHHhhcCCCcEEEEecCCCCCCh--hh----HHHHHHHhcc
Q 007415 2 SPPRILLCGDVLGRLN----------------QLFKRVQSVNKSAGPFDAVLCVGQFFPDSS--EL----LDEFMNYVEG 59 (604)
Q Consensus 2 ~~~KILv~GDvhG~~~----------------~l~~kv~~l~~k~GpfD~vi~~GDff~~~~--~~----~~~~~~~l~g 59 (604)
-+++||.++|+||++. .+.+.+.+..++.++--++|=+||++.... .. -.-..+++
T Consensus 4 ~~ltILhtnD~Hg~l~~~~~~~~~~~~~gg~a~~i~~~~~~~~~~~~~~Llld~GD~~qGs~~~~~~~~~g~~~~~~m-- 81 (282)
T cd07407 4 GDINFLHTTDTHGWLGGHLNDPNYSADWGDFASFVEHMREKADQKGVDLLLVDTGDLHDGNGLSDASPPPGSYSNPIF-- 81 (282)
T ss_pred ceEEEEEEcccccCCcCcCCcccccCCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCccCCeeceeeecCCChHHHHHH--
Confidence 3578999999999864 233444333233344346667999865311 00 01122333
Q ss_pred cCCCCCcEEEEcCCCCCh--HHHHHHHhccccccCcccCCceecCCEEEcCC----------CCeEEEc-CcEEEEEecc
Q 007415 60 RSEIPIPTYFIGDYGVGA--AKVLLAASKNSANQGFKMDGFKVTDNLFWLKG----------SGNFTLH-GLSVAYLSGR 126 (604)
Q Consensus 60 ~~~~p~ptyfv~GNh~~~--~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~----------~gv~~~~-GlrIa~lgG~ 126 (604)
..+++- +++.||||-. ...++.+...... ..-.+++.|+++-.. ..|++.+ |+||+.+|=.
T Consensus 82 -N~mgyD-a~tlGNHEFd~g~~~l~~l~~~~~~----~~fp~l~aNi~~~~~~~~~~~~~~~y~i~~~~~G~kIgiiGlt 155 (282)
T cd07407 82 -RMMPYD-LLTIGNHELYNYEVADDEYEGFVPS----WGDRYLTSNVDITDDSGLLVPIGSRYRKFTTKHGLRVLAFGFL 155 (282)
T ss_pred -HhcCCc-EEeecccccCccccHHHHHHHHHhh----cCCCEEEEEEEEeCCCCcccccccceEEEEcCCCcEEEEEEEe
Confidence 223332 6889999974 1122322110000 123478899876431 2234555 9999999876
Q ss_pred cC
Q 007415 127 QS 128 (604)
Q Consensus 127 ~~ 128 (604)
.+
T Consensus 156 t~ 157 (282)
T cd07407 156 FD 157 (282)
T ss_pred cc
Confidence 43
No 99
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=96.51 E-value=0.0057 Score=64.32 Aligned_cols=72 Identities=13% Similarity=0.211 Sum_probs=47.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCCh
Q 007415 4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGA 77 (604)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~ 77 (604)
.+|.|+||+||++..+...+..... .+-|.+|++||+..-+....+-+.-++.-....|--++.+-||||..
T Consensus 43 ~~i~ViGDIHG~~~dL~~l~~~~g~--~~~~~ylFLGDyVDRG~~s~Evi~lL~~lki~~p~~v~lLRGNHE~~ 114 (305)
T cd07416 43 APVTVCGDIHGQFYDLLKLFEVGGS--PANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECR 114 (305)
T ss_pred CCEEEEEeCCCCHHHHHHHHHhcCC--CCCceEEEECCccCCCCChHHHHHHHHHHHhhcCCCEEEEeCCCcHH
Confidence 4799999999999987765543211 13589999999966544333333333322234556689999999963
No 100
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=96.47 E-value=0.0067 Score=63.78 Aligned_cols=96 Identities=22% Similarity=0.254 Sum_probs=72.1
Q ss_pred CCCcccCCCCC--CCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHhc----
Q 007415 389 KECWFCLSSPS--VESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQ---- 462 (604)
Q Consensus 389 ~~C~FC~~~~~--~~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~~---- 462 (604)
..|.||..... .....||..+++.-++.|-.+.-|-+++|+|++|+..+.++++++..+|-...+.+...|...
T Consensus 185 ~~~~~~~~ve~E~~~~~R~v~e~~~~~a~~Pf~a~~pfEv~i~pk~hv~~l~~~sdee~~~lA~ilk~~~~~y~~~~~~~ 264 (338)
T COG1085 185 GSCMYCDLVEREKGDGERIVVENDHFLAFVPFWARWPFEVLIYPKEHVSFLTDLSDEELKDLAEILKKLLARYDNLFGNS 264 (338)
T ss_pred CCchHHHHHHHHhccCceEEecCceeEEeccccccCceEEEeccHHHhhhhhhCCHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 47999987632 234577777777777777777889999999999999999999999999998888777776642
Q ss_pred -CCceEEEeeccCC----CCeeEEEEEe
Q 007415 463 -GKEAVFFEWLSKR----GTHANLQAVP 485 (604)
Q Consensus 463 -g~~~v~~E~~~~~----~~H~HihvvP 485 (604)
.+...|.. +... -.|+|+|++|
T Consensus 265 fpY~m~~h~-ap~~~~~~~~~~h~~~~p 291 (338)
T COG1085 265 FPYSMGFHQ-APFNEVNEHYHLHAEIYP 291 (338)
T ss_pred Cceeeeeec-CCCCcccccceEEEEEcc
Confidence 24455544 2222 3589999998
No 101
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=96.40 E-value=0.0059 Score=63.81 Aligned_cols=203 Identities=14% Similarity=0.152 Sum_probs=100.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChHHHHHH
Q 007415 4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLA 83 (604)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~~l~~ 83 (604)
.++.|+||+||++..+...+..... -+-+-+|++||+..-+....+-+.-++.-....|--++.+-||||.. .+..
T Consensus 50 ~~i~viGDIHG~~~~L~~l~~~~~~--~~~~~~lfLGDyVDRG~~s~e~i~ll~~lk~~~p~~i~llrGNHE~~--~~~~ 125 (293)
T cd07414 50 APLKICGDIHGQYYDLLRLFEYGGF--PPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECA--SINR 125 (293)
T ss_pred CceEEEEecCCCHHHHHHHHHhcCC--CCcceEEEEeeEecCCCCcHHHHHHHHHhhhhCCCcEEEEecccchh--hHhh
Confidence 4699999999999988766654321 14578999999976543333333323222234555689999999963 1211
Q ss_pred HhccccccCccc-----CCce----ecCCEEEcCCCCeE-EEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcC-C
Q 007415 84 ASKNSANQGFKM-----DGFK----VTDNLFWLKGSGNF-TLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEE-P 152 (604)
Q Consensus 84 l~~~~~~~~~~~-----~g~e----i~~Nl~~Lg~~gv~-~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l~~~-~ 152 (604)
.. ||.. -+.+ +.....+|. +. .+++..+..=||..+. . -+.++++.+...... .
T Consensus 126 ~~------gf~~e~~~~y~~~l~~~~~~~f~~lP---laa~i~~~i~cvHgGi~p~-~-----~~l~~i~~i~r~~~~~~ 190 (293)
T cd07414 126 IY------GFYDECKRRYNIKLWKTFTDCFNCLP---VAAIIDEKIFCMHGGLSPD-L-----QSMEQIRRIMRPTDVPD 190 (293)
T ss_pred hc------chhhHHHHhhhHHHHHHHHHHHHHhH---HHHhhCCcEEEEccCCCcc-c-----CcHHHHhcccCCCCCCc
Confidence 10 0000 0000 001111111 11 2344444444555321 1 124444443321100 0
Q ss_pred C--CccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCC--CcccccccccCCCcceeEEE
Q 007415 153 G--IVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKG--VFYAREPYSNVDAVHVTRFL 228 (604)
Q Consensus 153 ~--~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~--~fyEr~Py~~~~~~~~TRFI 228 (604)
. -.|+|-+ +|-..+...... +.+. ....|..++.+++++..=++.+=||+- ..|+. + . +..-+|-|=
T Consensus 191 ~~~~~dllWs-DP~~~~~~~~~~---~Rg~-g~~fg~~~~~~Fl~~n~l~~iiR~He~~~~G~~~--~-~-~~~~iTvfS 261 (293)
T cd07414 191 QGLLCDLLWS-DPDKDVQGWGEN---DRGV-SFTFGKDVVAKFLNKHDLDLICRAHQVVEDGYEF--F-A-KRQLVTLFS 261 (293)
T ss_pred hhhHhhhhcc-CcccccCCCccC---CCCc-ceecCHHHHHHHHHHcCCeEEEECCccccCeEEE--e-C-CCcEEEEec
Confidence 0 1233332 211111111100 1111 124699999999999999999999953 35552 1 2 245578887
Q ss_pred EcCCCC
Q 007415 229 GLAPVG 234 (604)
Q Consensus 229 ~L~~~g 234 (604)
+..-+|
T Consensus 262 a~~Y~~ 267 (293)
T cd07414 262 APNYCG 267 (293)
T ss_pred CCcccC
Confidence 666554
No 102
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=96.38 E-value=0.084 Score=60.17 Aligned_cols=114 Identities=18% Similarity=0.070 Sum_probs=63.7
Q ss_pred CCEEEEEcCCCCCHHH----------HHHHHHHHHh---hcCCCcEEEEecCCCCCChhh-H---HHHHHHhcccCCCCC
Q 007415 3 PPRILLCGDVLGRLNQ----------LFKRVQSVNK---SAGPFDAVLCVGQFFPDSSEL-L---DEFMNYVEGRSEIPI 65 (604)
Q Consensus 3 ~~KILv~GDvhG~~~~----------l~~kv~~l~~---k~GpfD~vi~~GDff~~~~~~-~---~~~~~~l~g~~~~p~ 65 (604)
++.||.+.|+||.+.. +-..++++.+ +.++--++|-+||+|...... . .-..+.+ ..+++
T Consensus 34 ~ltil~tnD~Hg~~~~~~~~~~G~a~~a~~i~~~r~~~~~~~~~~l~ldaGD~~~Gs~~s~~~~g~~~i~~m---N~~g~ 110 (551)
T PRK09558 34 KITILHTNDHHGHFWRNEYGEYGLAAQKTLVDQIRKEVAAEGGSVLLLSGGDINTGVPESDLQDAEPDFRGM---NLIGY 110 (551)
T ss_pred EEEEEEecccCCCccccccCCccHHHHHHHHHHHHHHhhccCCCEEEEcCCccccceEhhhhcCCchhHHHH---hcCCC
Confidence 3679999999998742 1222333322 124556889999997642110 0 0011222 23344
Q ss_pred cEEEEcCCCCChHH--HHHHHhccccccCcccCCceecCCEEEcC-------CCCeEEEcCcEEEEEeccc
Q 007415 66 PTYFIGDYGVGAAK--VLLAASKNSANQGFKMDGFKVTDNLFWLK-------GSGNFTLHGLSVAYLSGRQ 127 (604)
Q Consensus 66 ptyfv~GNh~~~~~--~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg-------~~gv~~~~GlrIa~lgG~~ 127 (604)
- +++.||||-... .+..+-.. ..-.++|.|+++-. ..-+++++|+||+.+|=..
T Consensus 111 D-a~tlGNHEFD~G~~~L~~~~~~-------a~fp~l~aNv~~~~~g~~~~~py~i~~~~G~kIgiiG~~t 173 (551)
T PRK09558 111 D-AMAVGNHEFDNPLSVLRKQEKW-------AKFPFLSANIYQKSTGERLFKPYAIFDRQGLKIAVIGLTT 173 (551)
T ss_pred C-EEcccccccCcCHHHHHHhhcc-------CCCCEEEEEEEECCCCCcccCCeEEEEECCEEEEEEEEec
Confidence 4 456699996532 33332111 12357888987642 1234467899999999763
No 103
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=96.36 E-value=0.009 Score=57.07 Aligned_cols=65 Identities=15% Similarity=0.171 Sum_probs=42.1
Q ss_pred EEEcCCCCCHHHHHH---------------HHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEc
Q 007415 7 LLCGDVLGRLNQLFK---------------RVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIG 71 (604)
Q Consensus 7 Lv~GDvhG~~~~l~~---------------kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~ 71 (604)
++++|+|=.....+. .++.+++.-.+.|.||++||++...... ...+++ .+.+.|+++|.
T Consensus 2 ~~isD~Hlg~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~d~vi~~GDl~~~~~~~--~~~~~l---~~~~~~~~~v~ 76 (168)
T cd07390 2 YFTSDTHFGHANILRFCNRPFDDVEEMDEALIRNWNETVGPDDTVYHLGDFSFGGKAG--TELELL---SRLNGRKHLIK 76 (168)
T ss_pred eEecccccCCHHHHccCCCCCCCHHHHHHHHHHHHhhhcCCCCEEEEeCCCCCCCChH--HHHHHH---HhCCCCeEEEe
Confidence 678888865543322 2445555445689999999997653321 113344 34567899999
Q ss_pred CCCCC
Q 007415 72 DYGVG 76 (604)
Q Consensus 72 GNh~~ 76 (604)
||||.
T Consensus 77 GNHD~ 81 (168)
T cd07390 77 GNHDS 81 (168)
T ss_pred CCCCc
Confidence 99985
No 104
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=96.35 E-value=0.0064 Score=63.28 Aligned_cols=205 Identities=14% Similarity=0.081 Sum_probs=101.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChHH----
Q 007415 4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAK---- 79 (604)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~---- 79 (604)
.+|.|+||+||++..+...+..... .+-+.+|++||+..-+....+-+.-++.-....|-.++.+-||||...-
T Consensus 42 ~~i~vvGDIHG~~~dL~~ll~~~~~--~~~~~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~y 119 (285)
T cd07415 42 SPVTVCGDIHGQFYDLLELFRVGGD--PPDTNYLFLGDYVDRGYYSVETFLLLLALKVRYPDRITLLRGNHESRQITQVY 119 (285)
T ss_pred CCEEEEEeCCCCHHHHHHHHHHcCC--CCCCeEEEEeEECCCCcCHHHHHHHHHHHhhcCCCcEEEEecccchHhhhhhc
Confidence 3689999999999988765543321 1457899999997654433332322222123456679999999996310
Q ss_pred -HHHHHhccccccCcccCC--ceecCCEEEcCCCCeE-EEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHhhc---CC
Q 007415 80 -VLLAASKNSANQGFKMDG--FKVTDNLFWLKGSGNF-TLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAE---EP 152 (604)
Q Consensus 80 -~l~~l~~~~~~~~~~~~g--~ei~~Nl~~Lg~~gv~-~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l~~---~~ 152 (604)
+..+... .+ .... ..+.....+|. +. .+++..++.=||. +.... +.++++.|..... ..
T Consensus 120 gf~~e~~~-~y----~~~~l~~~~~~~f~~lP---laaii~~~i~cvHgGi-~p~~~-----~~~~i~~i~r~~~~~~~~ 185 (285)
T cd07415 120 GFYDECLR-KY----GNANVWKYCTDLFDYLP---LAALIDNQIFCVHGGL-SPSID-----TLDQIRAIDRFQEVPHEG 185 (285)
T ss_pred chhHHHHH-hc----CchHHHHHHHHHHHHhH---HHhEeCCeEEEEcCCC-CCCcc-----cHHHhhcccCCCCCCCCC
Confidence 1111100 00 0000 00001111111 11 2344334433444 22111 2444444433211 01
Q ss_pred CCccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCC--CcccccccccCCCcceeEEEEc
Q 007415 153 GIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKG--VFYAREPYSNVDAVHVTRFLGL 230 (604)
Q Consensus 153 ~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~--~fyEr~Py~~~~~~~~TRFI~L 230 (604)
--.|+|-+ +|-.. ..... -+.+. ....|.+++.+++++..=++.+=||+- ..|+.. . +..-+|-|=+.
T Consensus 186 ~~~dllWs-DP~~~-~~~~~---~~Rg~-g~~fg~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~---~-~~~~~TvfSa~ 255 (285)
T cd07415 186 PMCDLLWS-DPDDI-EGWGI---SPRGA-GYLFGQDVVEEFNHNNGLTLICRAHQLVMEGYQWM---F-DDKLVTVWSAP 255 (285)
T ss_pred CccceEec-CCCcc-CCCCc---CCCCC-ccccCHHHHHHHHHHCCCeEEEEcCccccceEEEe---c-CCcEEEEecCC
Confidence 12455544 22111 11111 01121 134699999999999999999999953 345532 1 13457888766
Q ss_pred CCCC
Q 007415 231 APVG 234 (604)
Q Consensus 231 ~~~g 234 (604)
.-++
T Consensus 256 ~y~~ 259 (285)
T cd07415 256 NYCY 259 (285)
T ss_pred cccC
Confidence 5443
No 105
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=96.31 E-value=0.0073 Score=63.35 Aligned_cols=206 Identities=13% Similarity=0.077 Sum_probs=101.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChHH-----
Q 007415 5 RILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAK----- 79 (604)
Q Consensus 5 KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~----- 79 (604)
.|.|+||+||++..+...+..+... +-+-+|++||+..-+....+-+.-++.-....|--++.+-||||...-
T Consensus 44 ~i~vvGDIHG~~~~L~~l~~~~~~~--~~~~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~g 121 (303)
T PTZ00239 44 PVNVCGDIHGQFYDLQALFKEGGDI--PNANYIFIGDFVDRGYNSVETMEYLLCLKVKYPGNITLLRGNHESRQCTQVYG 121 (303)
T ss_pred CEEEEEeCCCCHHHHHHHHHhcCCC--CCceEEEeeeEcCCCCCHHHHHHHHHHhhhcCCCcEEEEecccchHHHhhhcC
Confidence 5899999999999887666543211 457899999996544332332332322223445568999999996310
Q ss_pred HHHHHhccccccCcccCCc-eecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHhhc---CCCCc
Q 007415 80 VLLAASKNSANQGFKMDGF-KVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAE---EPGIV 155 (604)
Q Consensus 80 ~l~~l~~~~~~~~~~~~g~-ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l~~---~~~~v 155 (604)
+.++... .+ |. .... .+.....+|.=. ..+++..++.=||.-+. . -+.+++..+..... ...-.
T Consensus 122 f~~e~~~-ky--~~-~~~~~~~~~~f~~LPla--aii~~~i~cvHgGi~p~-~-----~~l~~i~~i~r~~~~~~~~~~~ 189 (303)
T PTZ00239 122 FYEEILR-KY--GN-SNPWRLFMDVFDCLPLA--ALIEGQILCVHGGLSPD-M-----RTIDQIRTIDRKIEIPHEGPFC 189 (303)
T ss_pred hHHHHHH-Hh--cC-hhHHHHHHHHHHhCchh--eEEcCeEEEEcCccCcc-c-----ccHhhhccccCCCCCCCCCCce
Confidence 1111110 00 00 0000 001111122210 13456555555665321 1 12334444332111 01124
Q ss_pred cEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCC--CcccccccccCCCcceeEEEEcCCC
Q 007415 156 DLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKG--VFYAREPYSNVDAVHVTRFLGLAPV 233 (604)
Q Consensus 156 DILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~--~fyEr~Py~~~~~~~~TRFI~L~~~ 233 (604)
|||-+- |. ....... -+.+. ....|.+++.+++++.+=++.+=||+- ..|+.. | .+..-+|-|=+..-+
T Consensus 190 dllWsD-P~-~~~~~~~---~~Rg~-g~~fg~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~-~--~~~~~iTvfSa~~Y~ 260 (303)
T PTZ00239 190 DLMWSD-PE-EVEYWAV---NSRGA-GYLFGAKVTKEFCRLNDLTLICRAHQLVMEGYKYW-F--PDQNLVTVWSAPNYC 260 (303)
T ss_pred eeEecC-cc-ccCCCcc---CCCCC-ccccCHHHHHHHHHHCCCcEEEEcChhhccceEEE-e--CCCeEEEEECCCccc
Confidence 554432 21 1111111 01121 125799999999999999999999953 245431 1 112357888765444
No 106
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=96.24 E-value=0.0082 Score=63.35 Aligned_cols=211 Identities=13% Similarity=0.152 Sum_probs=102.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChHHHHHH
Q 007415 4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLA 83 (604)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~~l~~ 83 (604)
.++.|+||+||++..+...+....-. .+-|-+|.+||+..-++...+-+.-++.-....|--++.+-||||.. .+..
T Consensus 60 ~~~~VvGDIHG~~~dL~~ll~~~g~~-~~~~~ylFLGDyVDRG~~S~Evl~ll~~lki~~p~~v~lLRGNHE~~--~~~~ 136 (316)
T cd07417 60 EKITVCGDTHGQFYDLLNIFELNGLP-SETNPYLFNGDFVDRGSFSVEVILTLFAFKLLYPNHFHLNRGNHETD--NMNK 136 (316)
T ss_pred ceeEEeecccCCHHHHHHHHHhcCCC-CccCeEEEEeeEecCCCChHHHHHHHHHhhhccCCceEEEeeccchH--HHHH
Confidence 46999999999999887655432110 01257999999975443333333333221233455688999999963 2221
Q ss_pred Hhc--cccccCcccCC-ceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcC---CCCccE
Q 007415 84 ASK--NSANQGFKMDG-FKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEE---PGIVDL 157 (604)
Q Consensus 84 l~~--~~~~~~~~~~g-~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l~~~---~~~vDI 157 (604)
... .+....+...- ..+...+.+|.-.- .+++..+..=||..+.. ..+-++++.+...... .--.|+
T Consensus 137 ~~gf~~e~~~k~~~~l~~~~~~~f~~LPlaa--ii~~~~~~vHgGi~~~~-----~~~l~~i~~i~r~~~~~~~~~~~dl 209 (316)
T cd07417 137 MYGFEGEVKAKYNEQMFDLFSEVFNWLPLAH--LINGKVLVVHGGLFSDD-----GVTLDDIRKIDRFRQPPDSGLMCEL 209 (316)
T ss_pred HhhhcchhhhcccHHHHHHHHHHHHhchHhh--eeCCeEEEEccccccCC-----CccHHHhhcccCCCCCCccccceee
Confidence 110 00000000000 00111112221111 23454455555553321 1234444444332111 011344
Q ss_pred EEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCC--CcccccccccCCCcceeEEEEcCCCC
Q 007415 158 FLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKG--VFYAREPYSNVDAVHVTRFLGLAPVG 234 (604)
Q Consensus 158 LLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~--~fyEr~Py~~~~~~~~TRFI~L~~~g 234 (604)
|-+ +|-. ...... .+.+.. ...|.+++.+++++..=++.+-||+- ..|+.. . +..-+|-|=+..-+|
T Consensus 210 lWs-DP~~-~~~~~~---s~Rg~g-~~fg~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~---~-~~~~~TvfSa~~Y~~ 278 (316)
T cd07417 210 LWS-DPQP-QPGRSP---SKRGVG-CQFGPDVTKRFLEENNLEYIIRSHEVKDEGYEVE---H-DGKCITVFSAPNYCD 278 (316)
T ss_pred eec-CCCC-CCCCCc---cCCCCc-eEeCHHHHHHHHHHcCCcEEEECCcccceeEEEe---c-CCeEEEEeCCccccC
Confidence 433 2111 111011 011211 24689999999999999999999963 355532 1 245678887665443
No 107
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=96.22 E-value=0.007 Score=63.23 Aligned_cols=205 Identities=12% Similarity=0.121 Sum_probs=101.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChHH-----
Q 007415 5 RILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAK----- 79 (604)
Q Consensus 5 KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~----- 79 (604)
.+.|+||+||++..+..-++.+.. .+.+-+|++||+..-++...+-+.-++.-....|-.++.+-||||...-
T Consensus 53 p~~ViGDIHG~~~~L~~l~~~~~~--~~~~~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~g 130 (294)
T PTZ00244 53 PVRVCGDTHGQYYDLLRIFEKCGF--PPYSNYLFLGDYVDRGKHSVETITLQFCYKIVYPENFFLLRGNHECASINKMYG 130 (294)
T ss_pred CceeeccCCCCHHHHHHHHHHcCC--CCcccEEEeeeEecCCCCHHHHHHHHHHHhhccCCeEEEEecccchHhHhhccC
Confidence 488999999999988766654422 2467888999996654433333322222123346678999999995310
Q ss_pred HHHHHhccccccCcccCC-ceecCCEEEcCCCCeE-EEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcC-CC--C
Q 007415 80 VLLAASKNSANQGFKMDG-FKVTDNLFWLKGSGNF-TLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEE-PG--I 154 (604)
Q Consensus 80 ~l~~l~~~~~~~~~~~~g-~ei~~Nl~~Lg~~gv~-~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l~~~-~~--~ 154 (604)
+.+++.. .+ ...- ..+.....+|. +. .+++..+..=||..+. . -+-++++.+..-... .. -
T Consensus 131 f~~e~~~-~y----~~~l~~~~~~~f~~lP---laaii~~~il~vHgGi~p~-~-----~~l~~i~~i~rp~~~~~~~~~ 196 (294)
T PTZ00244 131 FFDDVKR-RY----NIKLFKAFTDVFNTMP---VCCVISEKIICMHGGLSPD-L-----TSLASVNEIERPCDVPDRGIL 196 (294)
T ss_pred hHHHHHH-Hh----hHHHHHHHHHHHHhCc---hheEecCeeEEEcCCCCch-h-----hHHHHhhhhccccCCCccchh
Confidence 1111110 00 0000 00111111121 11 2344444444554321 0 023333333321100 01 1
Q ss_pred ccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCC--CcccccccccCCCcceeEEEEcCC
Q 007415 155 VDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKG--VFYAREPYSNVDAVHVTRFLGLAP 232 (604)
Q Consensus 155 vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~--~fyEr~Py~~~~~~~~TRFI~L~~ 232 (604)
.|+|-+- |-..+..... .+.+. ....|.+++.+++++..=++.+=||+- ..|+. .. +..-+|-|=+..-
T Consensus 197 ~dllWsD-P~~~~~~~~~---~~Rg~-g~~fg~~~~~~Fl~~n~l~~iiR~Hq~~~~G~~~---~~-~~~~iTvfSa~~Y 267 (294)
T PTZ00244 197 CDLLWAD-PEDEVRGFLE---SDRGV-SYLFGEDIVNDFLDMVDMDLIVRAHQVMERGYGF---FA-SRQLVTVFSAPNY 267 (294)
T ss_pred heeeecC-cccccCCCCc---CCCCC-ccccCHHHHHHHHHHcCCcEEEEcCccccCceEE---cC-CCeEEEEeCCccc
Confidence 3444332 2111111111 01121 135799999999999999999999953 34552 12 2456788876654
Q ss_pred CC
Q 007415 233 VG 234 (604)
Q Consensus 233 ~g 234 (604)
+|
T Consensus 268 ~~ 269 (294)
T PTZ00244 268 CG 269 (294)
T ss_pred cC
Confidence 44
No 108
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=96.20 E-value=0.0096 Score=62.83 Aligned_cols=208 Identities=13% Similarity=0.125 Sum_probs=103.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChH-----
Q 007415 4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAA----- 78 (604)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~----- 78 (604)
.+|.|+||+||++..+...+..... . +-+-.|++||+..-+....+-+.-++.-....|-.++.+-||||...
T Consensus 59 ~~i~vvGDIHG~~~dL~~l~~~~g~-~-~~~~ylfLGDyVDRG~~s~evl~ll~~lki~~p~~v~llRGNHE~~~~~~~y 136 (320)
T PTZ00480 59 APLKICGDVHGQYFDLLRLFEYGGY-P-PESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIY 136 (320)
T ss_pred CCeEEEeecccCHHHHHHHHHhcCC-C-CcceEEEeceecCCCCCcHHHHHHHHHhcccCCCceEEEecccchhhhhhhc
Confidence 3699999999999988765543211 1 35778899999764433233333333222445667899999999631
Q ss_pred HHHHHHhccccccCcccCCc-eecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcC---CCC
Q 007415 79 KVLLAASKNSANQGFKMDGF-KVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEE---PGI 154 (604)
Q Consensus 79 ~~l~~l~~~~~~~~~~~~g~-ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l~~~---~~~ 154 (604)
.+..+... .+ ...-. .+.....+|.-.- .+++..+..=||+-+. - -+-++++.+..-... .--
T Consensus 137 gF~~e~~~-~y----~~~l~~~~~~~F~~LPlaA--iI~~~i~cvHGGI~p~-~-----~~l~~i~~i~rp~~~~~~~~~ 203 (320)
T PTZ00480 137 GFYDECKR-RY----TIKLWKTFTDCFNCLPVAA--LIDEKILCMHGGLSPE-L-----SNLEQIRRIMRPTDVPDTGLL 203 (320)
T ss_pred chHHHHHh-hc----CHHHHHHHHHHHHhccHhh--eecCcEEEEcCCcCcc-c-----CCHHHHhcccCCCCCCccchh
Confidence 01111100 00 00000 0001111111100 2445444555555321 1 123334333321100 011
Q ss_pred ccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCC--CcccccccccCCCcceeEEEEcCC
Q 007415 155 VDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKG--VFYAREPYSNVDAVHVTRFLGLAP 232 (604)
Q Consensus 155 vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~--~fyEr~Py~~~~~~~~TRFI~L~~ 232 (604)
.|+|-+ +|-..+...... +.+. ....|.+++.+++++..=.+.+=||+- ..|+.. . +..-+|-|=+..-
T Consensus 204 ~dllWS-DP~~~~~~~~~s---~RG~-g~~FG~~~~~~Fl~~n~l~~IiR~Hq~v~~G~~~~---~-~~~~iTvFSa~~Y 274 (320)
T PTZ00480 204 CDLLWS-DPDKDVQGWADN---ERGV-SYVFSQEIVQVFLKKHELDLICRAHQVVEDGYEFF---S-KRQLVTLFSAPNY 274 (320)
T ss_pred hheeec-CcccccCCCccC---CCCC-ccccCHHHHHHHHHhCCCcEEEEcCccccCceEEe---C-CCcEEEEeCCccc
Confidence 344433 222112111110 1121 124799999999999999999999953 345531 2 2456888887665
Q ss_pred CCC
Q 007415 233 VGN 235 (604)
Q Consensus 233 ~gn 235 (604)
+|.
T Consensus 275 ~~~ 277 (320)
T PTZ00480 275 CGE 277 (320)
T ss_pred CCC
Confidence 553
No 109
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=96.15 E-value=0.14 Score=53.37 Aligned_cols=169 Identities=12% Similarity=0.075 Sum_probs=85.3
Q ss_pred HHHHHHHhhcCCCcEEEEecCCCCCChhh----------HHHHHHHhcccCCCCCcEEEEcCCCCChHH-----------
Q 007415 21 KRVQSVNKSAGPFDAVLCVGQFFPDSSEL----------LDEFMNYVEGRSEIPIPTYFIGDYGVGAAK----------- 79 (604)
Q Consensus 21 ~kv~~l~~k~GpfD~vi~~GDff~~~~~~----------~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~----------- 79 (604)
+.++.+.+...++|+||+.||+....... ...+.+.+.. .-..+|+|++.||||..+.
T Consensus 57 s~l~~i~~~~~~~dfii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~pv~~~~GNHD~~p~~~~~~~~~~~~ 135 (296)
T cd00842 57 SALEAIKKNHPKPDFILWTGDLVRHDVDEQTPETLVLISISNLTSLLKK-AFPDTPVYPALGNHDSYPVNQFPPNNSPSW 135 (296)
T ss_pred HHHHHHHHhCCCCCEEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHH-hCCCCCEEEcCCCCCCCcccccCCcccccH
Confidence 33444444445799999999997642210 1112222221 1246899999999986421
Q ss_pred HHHHHhccccccCcccCCceec-C-CEEEcCCCCeE--E-EcCcEEEEEecccCCCCCCC-----CCCCHHHHHHHHH-h
Q 007415 80 VLLAASKNSANQGFKMDGFKVT-D-NLFWLKGSGNF--T-LHGLSVAYLSGRQSSEGQQF-----GTYSQDDVDALRA-L 148 (604)
Q Consensus 80 ~l~~l~~~~~~~~~~~~g~ei~-~-Nl~~Lg~~gv~--~-~~GlrIa~lgG~~~~~~~~~-----~~~te~d~~~L~~-l 148 (604)
.++.+.. .|. .++. . .-.+. ++|-+ . ..|++|.+|.-..-.....+ .....++++-|.+ |
T Consensus 136 ~~~~~~~-~w~-------~~l~~~~~~~~~-~ggYY~~~~~~~l~vI~Lnt~~~~~~~~~~~~~~~~~~~~Ql~WL~~~L 206 (296)
T cd00842 136 LYDALAE-LWK-------SWLPEEAEETFK-KGGYYSVPVKPGLRVISLNTNLYYKKNFWLLGSNETDPAGQLQWLEDEL 206 (296)
T ss_pred HHHHHHH-HHH-------hhcCHHHHHHhh-cceEEEEEcCCCeEEEEEeCccccccChhhhccCCCCHHHHHHHHHHHH
Confidence 1222210 010 0000 0 00111 13333 3 46889988875532211100 1112334443332 1
Q ss_pred h--cCCCCccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhC--CCEEEEccCCCc
Q 007415 149 A--EEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIK--PRYHIAGSKGVF 210 (604)
Q Consensus 149 ~--~~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lk--PrYhf~Gh~~~f 210 (604)
. +..+.-=|++.|.+|...... . .......+.+|+++.+ ....|+||.|..
T Consensus 207 ~~a~~~~~~v~I~~HiPp~~~~~~-~----------~~~~~~~~~~ii~~y~~~i~~~~~GH~H~d 261 (296)
T cd00842 207 QEAEQAGEKVWIIGHIPPGVNSYD-T----------LENWSERYLQIINRYSDTIAGQFFGHTHRD 261 (296)
T ss_pred HHHHHCCCeEEEEeccCCCCcccc-c----------chHHHHHHHHHHHHHHHhhheeeecccccc
Confidence 1 111222368899988643210 0 0135677888999887 788999998864
No 110
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=96.12 E-value=0.011 Score=63.54 Aligned_cols=73 Identities=14% Similarity=0.231 Sum_probs=45.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCCh
Q 007415 4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGA 77 (604)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~ 77 (604)
.+|+|+||+||++..+...+..... ..+-+.+|++||+..-++...+-+.-++.-....|--+|.+-||||..
T Consensus 66 ~~i~VvGDIHG~~~dL~~ll~~~g~-~~~~~~ylFLGDyVDRGp~SlEvl~lL~~lki~~p~~v~lLRGNHE~~ 138 (377)
T cd07418 66 CEVVVVGDVHGQLHDVLFLLEDAGF-PDQNRFYVFNGDYVDRGAWGLETFLLLLSWKVLLPDRVYLLRGNHESK 138 (377)
T ss_pred CCEEEEEecCCCHHHHHHHHHHhCC-CCCCceEEEeccccCCCCChHHHHHHHHHHhhccCCeEEEEeeecccc
Confidence 3689999999999988766653211 101246899999965433323323222221234566689999999963
No 111
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=96.06 E-value=0.093 Score=59.30 Aligned_cols=213 Identities=13% Similarity=0.077 Sum_probs=116.1
Q ss_pred CCEEEEEcCCCCCHH---------------HHHHHHHHHHhhcCCCcEEEEecCCCCCCh--hh---HHHHHHHhcccCC
Q 007415 3 PPRILLCGDVLGRLN---------------QLFKRVQSVNKSAGPFDAVLCVGQFFPDSS--EL---LDEFMNYVEGRSE 62 (604)
Q Consensus 3 ~~KILv~GDvhG~~~---------------~l~~kv~~l~~k~GpfD~vi~~GDff~~~~--~~---~~~~~~~l~g~~~ 62 (604)
++.||.+.|+||++. .+...++.+.++. +-.++|=+||++.... .. -.-..+++ ..
T Consensus 26 ~l~ilhtnD~H~~l~~~~~~~~~~~~~g~~~~~~~v~~~ra~~-~~~llld~GD~~~G~~l~~~~~~g~~~~~~m---N~ 101 (517)
T COG0737 26 KLTILHTNDLHGHLEPYDYDDDGDTDGGLARIATLVKQLRAEN-KNVLLLDAGDLIQGSPLSDYLTKGEPTVDLL---NA 101 (517)
T ss_pred eEEEEEeccccccceeccccccCcccccHHHHHHHHHHHHhhc-CCeEEEeCCcccCCccccccccCCChHHHHH---hh
Confidence 578999999999998 6666666665555 4578999999865411 00 00122333 23
Q ss_pred CCCcEEEEcCCCCChHH--HHHHHhccccccCcccCCceecCCEEEcC--------CCCeEEEcCcEEEEEecccCC--C
Q 007415 63 IPIPTYFIGDYGVGAAK--VLLAASKNSANQGFKMDGFKVTDNLFWLK--------GSGNFTLHGLSVAYLSGRQSS--E 130 (604)
Q Consensus 63 ~p~ptyfv~GNh~~~~~--~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg--------~~gv~~~~GlrIa~lgG~~~~--~ 130 (604)
++.- +.+.||||.... .+..+... ..-.+++.|++.-. ..-|++++|++||.+|=.-+. .
T Consensus 102 m~yD-a~tiGNHEFd~g~~~l~~~~~~-------~~fp~l~aNv~~~~~~~~~~~~Py~I~~~~g~KIgiIG~~~~~~~~ 173 (517)
T COG0737 102 LGYD-AMTLGNHEFDYGLEALARLLDE-------AKFPVLSANVYDKNSTGPPFFKPYAIKEVGGVKIGIIGLTTPTIPT 173 (517)
T ss_pred cCCc-EEeecccccccCHHHHHHHHhc-------cCCceEEeeeEecCCCCccCcCCeEEEecCCeEEEEEEecCCcccc
Confidence 3333 566779996532 24333211 11236888987661 223456789999999965321 1
Q ss_pred CC--C---CCCCCHHHHHHHHHhhc--CCCCcc--EEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCE
Q 007415 131 GQ--Q---FGTYSQDDVDALRALAE--EPGIVD--LFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRY 201 (604)
Q Consensus 131 ~~--~---~~~~te~d~~~L~~l~~--~~~~vD--ILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrY 201 (604)
.. . -..|. +.++++.+... ...++| |+|||..-..-...... .+.. +.... .....
T Consensus 174 ~~~~~~~~~~~f~-d~~e~~~~~i~elk~~~vD~iI~LsH~G~~~d~~~~~~--~~~~----------~~~~~--~~iD~ 238 (517)
T COG0737 174 WEKPNAIEGVTFR-DPIEAAKKYIPELKGEGVDVIIALSHLGIEDDLELASE--VPGD----------VDVAV--PGIDL 238 (517)
T ss_pred cccccccCCcEEc-CHHHHHHHHHHHHHhcCCCEEEEEeccCcCcccccccc--cccc----------ccccc--cCcce
Confidence 00 0 12333 23333332210 012266 58899765533221110 0101 00000 33889
Q ss_pred EEEccCCCcccccccccCCCcceeEEEEcCCCCCcccceeEEEeccCC
Q 007415 202 HIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKEKQKFIHALSPTP 249 (604)
Q Consensus 202 hf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~~~gn~~K~Kw~yAf~i~p 249 (604)
.|.||.|..++..-+.. ....|-.+.-|.+|. ++.=+.|+-
T Consensus 239 i~~GH~H~~~~~~~~~~--~~~~t~ivqag~~gk-----~vG~~di~~ 279 (517)
T COG0737 239 IIGGHSHTVFPGGDKPG--TVNGTPIVQAGEYGK-----YVGVLDITF 279 (517)
T ss_pred EeccCCcccccCCcccC--ccCCEEEEccChhhC-----ceeEEEEEE
Confidence 99999887666543111 344688888888875 666666654
No 112
>PF02744 GalP_UDP_tr_C: Galactose-1-phosphate uridyl transferase, C-terminal domain; InterPro: IPR005850 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism. The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C.
Probab=96.03 E-value=0.0085 Score=57.37 Aligned_cols=72 Identities=22% Similarity=0.358 Sum_probs=45.6
Q ss_pred CCCcccCCCC--CCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 007415 389 KECWFCLSSP--SVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYK 460 (604)
Q Consensus 389 ~~C~FC~~~~--~~~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~ 460 (604)
+.|.||-.-. ..+...||+.+++.-++.|-..--|--++|+|.+|..++.++++++..++....+-+...+.
T Consensus 13 Gs~L~~D~~~~E~~~~~Riv~en~~f~a~vP~~a~wP~ev~ilpkrh~~~l~~l~~~E~~dlA~~l~~i~~r~d 86 (166)
T PF02744_consen 13 GSCLFCDHLQMELAEGERIVYENEHFVAFVPFAARWPFEVWILPKRHVPSLADLTDEERDDLAAILKPILRRYD 86 (166)
T ss_dssp SS-HHHHHHHHHHHH-TTEEEE-SSEEEE--TT--STT-EEEEESS--SSGGG--HHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHhhcCCCEEEEECCceEEEEECcccCCcEEEEecCCChhhHHHhhhHHHhhHHHHHHHHHHHhc
Confidence 4799997642 23345688889887777776677788999999999999999999988888776666555554
No 113
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=95.85 E-value=0.52 Score=52.24 Aligned_cols=131 Identities=15% Similarity=0.114 Sum_probs=69.3
Q ss_pred EcCcEEEEEecccCCCCCCCCCCCHHHHHHHHH-hhcCCCCccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHH
Q 007415 115 LHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRA-LAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSEL 193 (604)
Q Consensus 115 ~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~-l~~~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l 193 (604)
.+|++|.+|--.... ......+.+++++-|.+ |+.....-=|+++|.+|-.+.........+ + ........+.++
T Consensus 299 ~ggvrfIvLDSt~~~-G~~~G~L~eeQL~WLeqeLa~a~~k~VVVf~HHPp~s~g~~~~Dp~~p-g--~~~~n~~eLldL 374 (496)
T TIGR03767 299 AGGVRGISMDTTNRA-GGDEGSLGQTQFKWIKDTLRASSDTLFVLFSHHTSWSMVNELTDPVDP-G--EKRHLGTELVSL 374 (496)
T ss_pred ECCEEEEEEeCCCcC-CCcCCccCHHHHHHHHHHHhcCCCCCEEEEECCCCccccccccccccc-c--ccccCHHHHHHH
Confidence 457788888554321 12234567787776665 333333456888998886542211000001 0 012234567777
Q ss_pred HHHh-CCCEEEEccCCCccc---cc--c-----cccC-------CCcceeEEEEcCCCCCcccceeEEEeccCCCC
Q 007415 194 VAEI-KPRYHIAGSKGVFYA---RE--P-----YSNV-------DAVHVTRFLGLAPVGNKEKQKFIHALSPTPAA 251 (604)
Q Consensus 194 ~~~l-kPrYhf~Gh~~~fyE---r~--P-----y~~~-------~~~~~TRFI~L~~~gn~~K~Kw~yAf~i~p~~ 251 (604)
++.. +-+.+|+||.|.... +. | -.|+ +-.+.=|.|-+.. |.+..-++.+-+|+-.+
T Consensus 375 L~~ypnV~aVfsGHvH~n~i~~~~~~~~~~p~~gfweI~TaSlvdfPq~~Ri~Ei~~--n~dgt~si~tt~vd~~~ 448 (496)
T TIGR03767 375 LLEHPNVLAWVNGHTHSNKITAHRRVEGVGKDKGFWEINTASHIDFPQQGRIIELAD--NQDGTVSIFTTLIESAA 448 (496)
T ss_pred HhcCCCceEEEECCcCCCccccccCCCCCCCcCCeEEEeccccccCCCCceEEEEEe--CCCCcEEEEEEecccCC
Confidence 7776 678899999764321 10 0 1121 1234556666653 33355678887776444
No 114
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=95.82 E-value=0.019 Score=55.01 Aligned_cols=58 Identities=12% Similarity=0.121 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhhcCCCcEEEEecCCCCCChhh-HHHHHHH-hcccCCCCCcEEEEcCCCCC
Q 007415 18 QLFKRVQSVNKSAGPFDAVLCVGQFFPDSSEL-LDEFMNY-VEGRSEIPIPTYFIGDYGVG 76 (604)
Q Consensus 18 ~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~-~~~~~~~-l~g~~~~p~ptyfv~GNh~~ 76 (604)
..++++.++..+. +.|.||++||++...... ...+... +.......+++|+|.||||.
T Consensus 28 ~~~~~l~~~~~~~-~~d~lii~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~GNHD~ 87 (172)
T cd07391 28 DTLERLDRLIEEY-GPERLIILGDLKHSFGGLSRQEFEEVAFLRLLAKDVDVILIRGNHDG 87 (172)
T ss_pred HHHHHHHHHHHhc-CCCEEEEeCcccccccccCHHHHHHHHHHHhccCCCeEEEEcccCcc
Confidence 4556666665555 479999999998431110 1111111 11224567899999999985
No 115
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.81 E-value=0.082 Score=48.94 Aligned_cols=111 Identities=20% Similarity=0.276 Sum_probs=68.8
Q ss_pred CEEEEEcCCCC--CHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChHHHH
Q 007415 4 PRILLCGDVLG--RLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVL 81 (604)
Q Consensus 4 ~KILv~GDvhG--~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~~l 81 (604)
|-+||+||.|= +-..|-.|.+++. --|++.-|+|+|++.+. +..+|| +.+.-.+-+|-|.-+
T Consensus 1 mLvL~lgD~HiP~Ra~~Lp~KFkklL-vPgki~hilctGNlcs~------e~~dyl---k~l~~dvhiVrGeFD------ 64 (183)
T KOG3325|consen 1 MLVLVLGDLHIPHRANDLPAKFKKLL-VPGKIQHILCTGNLCSK------ESYDYL---KTLSSDVHIVRGEFD------ 64 (183)
T ss_pred CEEEEeccccCCccccccCHHHHhcc-CCCceeEEEEeCCcchH------HHHHHH---HhhCCCcEEEecccC------
Confidence 45899999985 2233333444333 24789999999997653 356777 334344556666332
Q ss_pred HHHhccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcCCCCccEEEe
Q 007415 82 LAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLT 160 (604)
Q Consensus 82 ~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l~~~~~~vDILLT 160 (604)
+|+.|-. .+++|++-++|+...|-.-.+.. +.+.+..|.. .-.||||||
T Consensus 65 --------------------~~~~yP~-~kvvtvGqfkIG~chGhqViP~g-----d~~sL~~LaR----qldvDILl~ 113 (183)
T KOG3325|consen 65 --------------------ENLKYPE-NKVVTVGQFKIGLCHGHQVIPWG-----DPESLALLAR----QLDVDILLT 113 (183)
T ss_pred --------------------ccccCCc-cceEEeccEEEEeecCcEeecCC-----CHHHHHHHHH----hcCCcEEEe
Confidence 2333333 47889999999999998654333 2333333332 247999997
No 116
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=95.80 E-value=0.021 Score=60.17 Aligned_cols=72 Identities=18% Similarity=0.307 Sum_probs=44.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhh----cCC--CcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCC
Q 007415 5 RILLCGDVLGRLNQLFKRVQSVNKS----AGP--FDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVG 76 (604)
Q Consensus 5 KILv~GDvhG~~~~l~~kv~~l~~k----~Gp--fD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~ 76 (604)
.+.|+||+||++..+...++.+.-. .|. ..-+|++||+..-++...+-+.-++.-....|--+|.+-||||.
T Consensus 49 ~~~viGDIHG~~~~L~~ll~~~g~~~~~~~~~~~~~~~vfLGDyVDRGp~s~evl~ll~~lk~~~p~~v~lLRGNHE~ 126 (311)
T cd07419 49 PIKIFGDIHGQFGDLMRLFDEYGSPVTEAAGDIEYIDYLFLGDYVDRGSNSLETICLLLALKVKYPNQIHLIRGNHED 126 (311)
T ss_pred CEEEEEeccCCHHHHHHHHHHcCCCcccccCCCcCceEEEECCccCCCCChHHHHHHHHHhhhcCCCcEEEeccccch
Confidence 5899999999999887666544211 011 12477999986543332332322221123456678999999996
No 117
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=95.68 E-value=0.06 Score=55.46 Aligned_cols=70 Identities=13% Similarity=0.169 Sum_probs=44.5
Q ss_pred CEEEEEcCCCCC--HHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChH
Q 007415 4 PRILLCGDVLGR--LNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAA 78 (604)
Q Consensus 4 ~KILv~GDvhG~--~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~ 78 (604)
||||++||+-|+ -..+-+.+..+.+++ +.|++|+-||.....-.......+.| .+.++.++-+ |||.-+.
T Consensus 1 m~ilfiGDi~G~~Gr~~l~~~L~~lk~~~-~~D~vIaNgEn~~gG~Gi~~~~~~~L---~~~GvDviT~-GNH~~Dk 72 (266)
T TIGR00282 1 IKFLFIGDVYGKAGRKIVKNNLPQLKSKY-QADLVIANGENTTHGKGLTLKIYEFL---KQSGVNYITM-GNHTWFQ 72 (266)
T ss_pred CeEEEEEecCCHHHHHHHHHHHHHHHHhC-CCCEEEEcCcccCCCCCCCHHHHHHH---HhcCCCEEEc-cchhccC
Confidence 799999999999 455556667666655 58999999997543211111222333 3455554444 7998653
No 118
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=95.65 E-value=0.23 Score=52.52 Aligned_cols=120 Identities=13% Similarity=0.001 Sum_probs=63.2
Q ss_pred CEEEEEcCCCCCHH------HHHHHHHHHHhh---cCCCcEEEEecCCCCCChhh------------HHHHHHHhcccCC
Q 007415 4 PRILLCGDVLGRLN------QLFKRVQSVNKS---AGPFDAVLCVGQFFPDSSEL------------LDEFMNYVEGRSE 62 (604)
Q Consensus 4 ~KILv~GDvhG~~~------~l~~kv~~l~~k---~GpfD~vi~~GDff~~~~~~------------~~~~~~~l~g~~~ 62 (604)
+.||.+.|+||++. .+-..++++.++ .++--++|-+||+|....-. -.-..++++ .
T Consensus 1 l~IlhtnD~Hg~~~~~gg~ar~a~~i~~~r~~~~~~~~~~l~ldaGD~~qGs~~~~~~~~~~~~~~~G~~~i~~mN---~ 77 (313)
T cd08162 1 LQLLHTSDGESGLLAEDDAPNFSALVNALKDEAAAEYDNTLTLSSGDNFIPGPFFNASLDPLIYGDPGRADILILN---A 77 (313)
T ss_pred CeEEEecccccCccccCCHHHHHHHHHHHHHhhhccCCCeEEEecCccccCchhhhhhccccccccCChHHHHHHh---c
Confidence 36999999999853 333334444332 14556999999987532100 001123332 2
Q ss_pred CCCcEEEEcCCCCChH--HHHHHHhccccccCcccCCceecCCEEEcC-----------------------CCCeEEEcC
Q 007415 63 IPIPTYFIGDYGVGAA--KVLLAASKNSANQGFKMDGFKVTDNLFWLK-----------------------GSGNFTLHG 117 (604)
Q Consensus 63 ~p~ptyfv~GNh~~~~--~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg-----------------------~~gv~~~~G 117 (604)
+++. +.+.||||-.. +.+..+-......+ ...-.+++.|+.+-+ ..-|++++|
T Consensus 78 ~g~D-a~tlGNHEFD~G~~~L~~~~~~~~~~~-~a~fp~l~aNv~~~~~~~~~~~~~~~~~~~~~~~~~~~py~I~e~~G 155 (313)
T cd08162 78 LGVQ-AIALGNHEFDLGTDELADLIRPSAAGG-GAAFPYLSANLDFSGDANLAGLATADGQQAAAIAGKIAKSTVVEVGG 155 (313)
T ss_pred cCCc-EEeccccccccCHHHHHHHHHhhcccc-cCCCCEEEecccccCCcccccccccccccccccccccCCeEEEEECC
Confidence 2232 57899999642 23332211100000 000236778876432 123446799
Q ss_pred cEEEEEecccC
Q 007415 118 LSVAYLSGRQS 128 (604)
Q Consensus 118 lrIa~lgG~~~ 128 (604)
+||+.+|-...
T Consensus 156 ~kIGviGltt~ 166 (313)
T cd08162 156 EKIGVVGATTP 166 (313)
T ss_pred EEEEEEEeccc
Confidence 99999997643
No 119
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=95.53 E-value=0.26 Score=50.50 Aligned_cols=109 Identities=14% Similarity=0.142 Sum_probs=61.7
Q ss_pred EEEEEcCCCCC--HHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChHH-HH
Q 007415 5 RILLCGDVLGR--LNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAK-VL 81 (604)
Q Consensus 5 KILv~GDvhG~--~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~-~l 81 (604)
|||++||+-|+ ...+.+.+.++-++. +.|++|.-||-............+.| ..+++- +++.|||+-+.. ++
T Consensus 1 ~ilfigdi~g~~G~~~~~~~l~~lk~~~-~~D~vi~NgEn~~gg~gl~~~~~~~L---~~~G~D-~iTlGNH~fD~gel~ 75 (255)
T cd07382 1 KILFIGDIVGKPGRKAVKEHLPKLKKEY-KIDFVIANGENAAGGKGITPKIAKEL---LSAGVD-VITMGNHTWDKKEIL 75 (255)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHHC-CCCEEEECCccccCCCCCCHHHHHHH---HhcCCC-EEEecccccCcchHH
Confidence 69999999997 445566677776555 58999999997433211112233333 345555 445589986543 33
Q ss_pred HHHhccccccCcccCCceecCCEEE--cCC-CCeEEEcCcEEEEEecc
Q 007415 82 LAASKNSANQGFKMDGFKVTDNLFW--LKG-SGNFTLHGLSVAYLSGR 126 (604)
Q Consensus 82 ~~l~~~~~~~~~~~~g~ei~~Nl~~--Lg~-~gv~~~~GlrIa~lgG~ 126 (604)
..+.... -....-|+.. .++ ..+++.+|++|+.+|=.
T Consensus 76 ~~l~~~~--------~~l~~aN~~~~~pg~~~~i~~~~G~kIaVigl~ 115 (255)
T cd07382 76 DFIDEEP--------RLLRPANYPPGTPGRGYGVVEVNGKKIAVINLM 115 (255)
T ss_pred HHHhcCc--------CceEeeecCCCCCCCCeEEEEECCEEEEEEEEe
Confidence 4343110 0111223221 122 23456789999998754
No 120
>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=0.048 Score=55.32 Aligned_cols=208 Identities=14% Similarity=0.133 Sum_probs=113.2
Q ss_pred CCEEEEEcCC--CCCHHHHHHH--HHHHHhhcCCCcEEEEecCCCCC-------ChhhHHHHHHHhcccCCCCCcEEEEc
Q 007415 3 PPRILLCGDV--LGRLNQLFKR--VQSVNKSAGPFDAVLCVGQFFPD-------SSELLDEFMNYVEGRSEIPIPTYFIG 71 (604)
Q Consensus 3 ~~KILv~GDv--hG~~~~l~~k--v~~l~~k~GpfD~vi~~GDff~~-------~~~~~~~~~~~l~g~~~~p~ptyfv~ 71 (604)
..++||+||. +|.|.+-..+ +.+|.+|. .+|+||-+||=|-. ++.-.+.|+.+++. ..+-.|-|-|.
T Consensus 43 slsflvvGDwGr~g~~nqs~va~qmg~ige~l-~idfvlS~GDNfYd~G~~~~~Dp~Fq~sF~nIYT~-pSLQkpWy~vl 120 (336)
T KOG2679|consen 43 SLSFLVVGDWGRRGSFNQSQVALQMGEIGEKL-DIDFVLSTGDNFYDTGLTSENDPRFQDSFENIYTA-PSLQKPWYSVL 120 (336)
T ss_pred ceEEEEEcccccCCchhHHHHHHHHHhHHHhc-cceEEEecCCcccccCCCCCCChhHHhhhhhcccC-cccccchhhhc
Confidence 3689999997 4555543322 33444455 59999999994322 22333456666653 33557999999
Q ss_pred CCCCChHHHHHHHhccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEe--ccc-CCC-CCCCC------CCCHHH
Q 007415 72 DYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLS--GRQ-SSE-GQQFG------TYSQDD 141 (604)
Q Consensus 72 GNh~~~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lg--G~~-~~~-~~~~~------~~te~d 141 (604)
||||---++-++|+.--. ..+..|+|+..+|... -++++-+.-+.-+. -.. .++ ..+|. .|....
T Consensus 121 GNHDyrGnV~AQls~~l~----~~d~RW~c~rsf~~~a-e~ve~f~v~~~~f~~d~~~~~~~~~ydw~~v~PR~~~~~~~ 195 (336)
T KOG2679|consen 121 GNHDYRGNVEAQLSPVLR----KIDKRWICPRSFYVDA-EIVEMFFVDTTPFMDDTFTLCTDDVYDWRGVLPRVKYLRAL 195 (336)
T ss_pred cCccccCchhhhhhHHHH----hhccceecccHHhhcc-eeeeeeccccccchhhheecccccccccccCChHHHHHHHH
Confidence 999844344444430000 1345799999988873 44443322222221 110 110 11111 111111
Q ss_pred HHHHH-HhhcCCCCccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcccccccccCC
Q 007415 142 VDALR-ALAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVD 220 (604)
Q Consensus 142 ~~~L~-~l~~~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fyEr~Py~~~~ 220 (604)
..-|. ++.+....--|++-|-+-..+..+++. ..--+.+.-|+++.+--..++||.|.- | +.- +
T Consensus 196 l~~le~~L~~S~a~wkiVvGHh~i~S~~~HG~T----------~eL~~~LlPiL~~n~VdlY~nGHDHcL-Q---his-~ 260 (336)
T KOG2679|consen 196 LSWLEVALKASRAKWKIVVGHHPIKSAGHHGPT----------KELEKQLLPILEANGVDLYINGHDHCL-Q---HIS-S 260 (336)
T ss_pred HHHHHHHHHHhhcceEEEecccceehhhccCCh----------HHHHHHHHHHHHhcCCcEEEecchhhh-h---hcc-C
Confidence 11111 122234556788888887777655442 223456778899999999999996641 1 111 1
Q ss_pred CcceeEEEEcCC
Q 007415 221 AVHVTRFLGLAP 232 (604)
Q Consensus 221 ~~~~TRFI~L~~ 232 (604)
....+-|+-=|.
T Consensus 261 ~e~~iqf~tSGa 272 (336)
T KOG2679|consen 261 PESGIQFVTSGA 272 (336)
T ss_pred CCCCeeEEeeCC
Confidence 245677775553
No 121
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=95.46 E-value=0.06 Score=53.02 Aligned_cols=42 Identities=14% Similarity=0.062 Sum_probs=30.1
Q ss_pred CCcHHHHHHHHHhCCCEEEEccCCCcccccccccCCCcceeEEEEcCCC
Q 007415 185 NTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPV 233 (604)
Q Consensus 185 ~Gs~~i~~l~~~lkPrYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~~~ 233 (604)
.....+.+++....+.+.++||.|..+... ...+.++|+|.+
T Consensus 176 ~~~~~~~~~~~~~~~~~~i~GH~H~~~~~~-------~~~~~~~n~G~W 217 (217)
T cd07398 176 VFEEAVARLARRKGVDGVICGHTHRPALHE-------LDGKLYINLGDW 217 (217)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCCeEE-------ECCEEEEECCCC
Confidence 455567788889999999999988653322 124688888863
No 122
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=95.28 E-value=0.022 Score=54.75 Aligned_cols=57 Identities=18% Similarity=0.209 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhcCCCcEEEEecCCCCCChhh-HHHHH-------HHhcccCC--CCCcEEEEcCCCCC
Q 007415 19 LFKRVQSVNKSAGPFDAVLCVGQFFPDSSEL-LDEFM-------NYVEGRSE--IPIPTYFIGDYGVG 76 (604)
Q Consensus 19 l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~-~~~~~-------~~l~g~~~--~p~ptyfv~GNh~~ 76 (604)
+.+++..+..+. +.|+||++||+|...... ..++. .++..... ..+|+|+|+||||.
T Consensus 33 ~~~~~~~~i~~~-~pd~vi~lGDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~ 99 (171)
T cd07384 33 MRRAFKTALQRL-KPDVVLFLGDLFDGGRIADSEEWEEYVKRFKKIFFLPSNGLEDIPVYYVPGNHDI 99 (171)
T ss_pred HHHHHHHHHHhc-CCCEEEEeccccCCcEeCCHHHHHHHHHHHHHHhcccccccCCceEEEECCcccc
Confidence 445555555544 589999999998653211 11122 22221110 26899999999984
No 123
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=94.89 E-value=0.04 Score=52.10 Aligned_cols=45 Identities=13% Similarity=0.127 Sum_probs=27.5
Q ss_pred CCcEEEEecCCCCCChh-hHHHH----HHHhcccC-CCCCcEEEEcCCCCC
Q 007415 32 PFDAVLCVGQFFPDSSE-LLDEF----MNYVEGRS-EIPIPTYFIGDYGVG 76 (604)
Q Consensus 32 pfD~vi~~GDff~~~~~-~~~~~----~~~l~g~~-~~p~ptyfv~GNh~~ 76 (604)
++|+||++||++..... ...++ ..+..-.. ..++|+|+|.||||.
T Consensus 38 ~pd~vv~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~GNHD~ 88 (156)
T cd08165 38 QPDVVFVLGDLFDEGKWSTDEEWEDYVERFKKMFGHPPDLPLHVVVGNHDI 88 (156)
T ss_pred CCCEEEECCCCCCCCccCCHHHHHHHHHHHHHHhccCCCCeEEEEcCCCCc
Confidence 58999999999865321 11112 22221111 136899999999973
No 124
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=94.83 E-value=0.064 Score=59.04 Aligned_cols=75 Identities=21% Similarity=0.331 Sum_probs=52.1
Q ss_pred CCEEEEEcCCCC------------CHHHHHHHHHHHHhhcCCCcEEEEecCCCCCCh-------hhHH------------
Q 007415 3 PPRILLCGDVLG------------RLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS-------ELLD------------ 51 (604)
Q Consensus 3 ~~KILv~GDvhG------------~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~-------~~~~------------ 51 (604)
.+||||..|+|- .|. .|+-|-.|...+ .+|+|+.-||+|-++. ...+
T Consensus 13 tirILVaTD~HlGY~EkD~vrg~DSf~-tFeEIl~iA~e~-~VDmiLlGGDLFHeNkPSr~~L~~~i~lLRryClgdkP~ 90 (646)
T KOG2310|consen 13 TIRILVATDNHLGYGEKDAVRGDDSFV-TFEEILEIAQEN-DVDMILLGGDLFHENKPSRKTLHRCLELLRRYCLGDKPV 90 (646)
T ss_pred ceEEEEeecCccccccCCcccccchHH-HHHHHHHHHHhc-CCcEEEecCcccccCCccHHHHHHHHHHHHHHccCCCce
Confidence 379999999995 233 334444454444 6999999999997621 0000
Q ss_pred -----------------HHHHHhcccCCCCCcEEEEcCCCCChHH
Q 007415 52 -----------------EFMNYVEGRSEIPIPTYFIGDYGVGAAK 79 (604)
Q Consensus 52 -----------------~~~~~l~g~~~~p~ptyfv~GNh~~~~~ 79 (604)
....|.++...+.+|++=|.|||++|..
T Consensus 91 ~le~lSD~s~~f~~~~f~~VNY~DpNlNIsIPVFsIHGNHDDpSG 135 (646)
T KOG2310|consen 91 QLEILSDQSVNFGNSVFGNVNYEDPNLNISIPVFSIHGNHDDPSG 135 (646)
T ss_pred eeEEecccceeccccccceecccCCCcceeeeeEEeecCCCCCcc
Confidence 1234667778899999999999999853
No 125
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=94.57 E-value=0.065 Score=53.94 Aligned_cols=69 Identities=16% Similarity=0.282 Sum_probs=46.3
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCC
Q 007415 6 ILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVG 76 (604)
Q Consensus 6 ILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~ 76 (604)
+-||||+||+|..+.+.+ ++-. .+|----|..||+..-++...+.+.-+++-+.+.|--+-++.||||.
T Consensus 62 vtvcGDvHGqf~dl~ELf-kiGG-~~pdtnylfmGDyvdrGy~SvetVS~lva~Kvry~~rvtilrGNHEs 130 (319)
T KOG0371|consen 62 VTVCGDVHGQFHDLIELF-KIGG-LAPDTNYLFMGDYVDRGYYSVETVSLLVALKVRYPDRVTILRGNHES 130 (319)
T ss_pred eEEecCcchhHHHHHHHH-HccC-CCCCcceeeeeeecccccchHHHHHHHHHhhccccceeEEecCchHH
Confidence 789999999999998877 3322 22545567899996654443333333343344556668999999984
No 126
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.38 E-value=0.16 Score=51.03 Aligned_cols=79 Identities=15% Similarity=0.141 Sum_probs=48.9
Q ss_pred CcEEEEecCCCCC----C--hhhHHHHHHHhcccCCCCCcEEEEcCCCCChHHHHHHHhccccccCcccCCceecCCEEE
Q 007415 33 FDAVLCVGQFFPD----S--SELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFW 106 (604)
Q Consensus 33 fD~vi~~GDff~~----~--~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~~l~~l~~~~~~~~~~~~g~ei~~Nl~~ 106 (604)
-|.|+++||+|.. + +....++..-|.-...-+.++||++||||. ++.+... .-+.++..
T Consensus 30 ad~lyilGDifd~w~g~~~~~~~~~~V~~~l~~~a~~G~~v~~i~GN~Df---ll~~~f~------------~~~g~~~l 94 (237)
T COG2908 30 ADALYILGDIFDGWIGDDEPPQLHRQVAQKLLRLARKGTRVYYIHGNHDF---LLGKRFA------------QEAGGMTL 94 (237)
T ss_pred CcEEEEechhhhhhhcCCcccHHHHHHHHHHHHHHhcCCeEEEecCchHH---HHHHHHH------------hhcCceEE
Confidence 5999999999753 1 111222222222234567999999999972 3333221 01234566
Q ss_pred cCCCCeEEEcCcEEEEEecc
Q 007415 107 LKGSGNFTLHGLSVAYLSGR 126 (604)
Q Consensus 107 Lg~~gv~~~~GlrIa~lgG~ 126 (604)
+....+++..|.++..+=|-
T Consensus 95 ~~~~~~~~l~g~~~Ll~HGD 114 (237)
T COG2908 95 LPDPIVLDLYGKRILLAHGD 114 (237)
T ss_pred cCcceeeeecCcEEEEEeCC
Confidence 77666778899999988885
No 127
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=93.22 E-value=1.4 Score=48.30 Aligned_cols=186 Identities=18% Similarity=0.099 Sum_probs=91.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCC-Chh--hHHHHHHHhcccCCCCCcEEEEcCCCCChHH
Q 007415 3 PPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPD-SSE--LLDEFMNYVEGRSEIPIPTYFIGDYGVGAAK 79 (604)
Q Consensus 3 ~~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~-~~~--~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~ 79 (604)
+.++.++||.--.... .....+...+.++|+||.+|||--. ... .=++|...+.. ...-+|..++.||||....
T Consensus 147 ~~~~~i~GDlG~~~~~--~s~~~~~~~~~k~d~vlhiGDlsYa~~~~n~~wD~f~r~vEp-~As~vPymv~~GNHE~d~~ 223 (452)
T KOG1378|consen 147 PTRAAIFGDMGCTEPY--TSTLRNQEENLKPDAVLHIGDLSYAMGYSNWQWDEFGRQVEP-IASYVPYMVCSGNHEIDWP 223 (452)
T ss_pred ceeEEEEccccccccc--cchHhHHhcccCCcEEEEecchhhcCCCCccchHHHHhhhhh-hhccCceEEecccccccCC
Confidence 3578899996543221 0122333444469999999999322 111 11234444433 3355899999999996422
Q ss_pred H---HHHHhccccccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHH-HhhcCC---
Q 007415 80 V---LLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALR-ALAEEP--- 152 (604)
Q Consensus 80 ~---l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~-~l~~~~--- 152 (604)
- ...+. ... +.+....+--.||+|- +.+++..|.+||--... ....++++. +=|+ .|++.+
T Consensus 224 ~~~~F~~y~-~Rf--~mP~~~s~s~~~l~YS-----fd~G~vhfv~lsse~~~---~~~~~~~QY-~WL~~dL~~v~r~~ 291 (452)
T KOG1378|consen 224 PQPCFVPYS-ARF--NMPGNSSESDSNLYYS-----FDVGGVHFVVLSTETYY---NFLKGTAQY-QWLERDLASVDRKK 291 (452)
T ss_pred Ccccccccc-eee--ccCCCcCCCCCceeEE-----EeeccEEEEEEeccccc---cccccchHH-HHHHHHHHHhcccC
Confidence 0 00000 000 0000000111245542 34667788877643221 111222221 1111 122111
Q ss_pred CCccEEEeCCCCccccc--cccccccccCcCCCCCCc--HHHHHHHHHhCCCEEEEccCCCcccc
Q 007415 153 GIVDLFLTNEWPSGVTN--KAAASDMLVGISDSSNTD--STVSELVAEIKPRYHIAGSKGVFYAR 213 (604)
Q Consensus 153 ~~vDILLTh~wP~gi~~--~~~~~~~~~~~~~~~~Gs--~~i~~l~~~lkPrYhf~Gh~~~fyEr 213 (604)
.+==|++-|.|=..-.. ... ++ ...+ ..+.+|.-+.+-...|+||.|. |||
T Consensus 292 tPWlIv~~HrP~Y~S~~~~~~r-----eG----~~~~~~~~LE~l~~~~~VDvvf~GHvH~-YER 346 (452)
T KOG1378|consen 292 TPWLIVQGHRPMYCSSNDAHYR-----EG----EFESMREGLEPLFVKYKVDVVFWGHVHR-YER 346 (452)
T ss_pred CCeEEEEecccceecCCchhhc-----cC----cchhhHHHHHHHHHHhceeEEEecccee-hhc
Confidence 35556666654443222 111 11 1112 3799999999999999999885 577
No 128
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=93.18 E-value=3.8 Score=51.07 Aligned_cols=205 Identities=13% Similarity=0.060 Sum_probs=100.9
Q ss_pred CEEEEEcCCCCCHH----------------HHHHHHHHHHhhcCCCcEEEEecCCCCCChhhH-------------HHHH
Q 007415 4 PRILLCGDVLGRLN----------------QLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELL-------------DEFM 54 (604)
Q Consensus 4 ~KILv~GDvhG~~~----------------~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~-------------~~~~ 54 (604)
++||.++|+||++. .+...++++.+++ +--++|=.||++....-.. .-..
T Consensus 42 l~il~tnD~Hg~l~~~~y~~~~~~~~~Glar~at~i~~~r~~~-~n~llld~GD~~qGs~l~~~~~~~~~~~~~~~~~~i 120 (1163)
T PRK09419 42 IQILATTDLHGNFMDYDYASDKETTGFGLAQTATLIKKARKEN-PNTLLVDNGDLIQGNPLGEYAVKDNILFKNKTHPMI 120 (1163)
T ss_pred EEEEEEecccccccccccccCCCCCCcCHHHHHHHHHHHHHhC-CCeEEEeCCCccCCChhhhHHhhhccccCCCcCHHH
Confidence 68999999999863 3334444443333 4345555999875422000 0011
Q ss_pred HHhcccCCCCCcEEEEcCCCCChH--HHHHHHhccccccCcccCCceecCCEEEcC------CCCeEEE---------cC
Q 007415 55 NYVEGRSEIPIPTYFIGDYGVGAA--KVLLAASKNSANQGFKMDGFKVTDNLFWLK------GSGNFTL---------HG 117 (604)
Q Consensus 55 ~~l~g~~~~p~ptyfv~GNh~~~~--~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg------~~gv~~~---------~G 117 (604)
+.+ ..+.+- +++.||||-.. +.+..+-.. ..-..+|.|++.-. ..-|++. +|
T Consensus 121 ~~m---N~lgyD-a~~lGNHEFd~G~~~L~~~~~~-------a~fp~l~aNv~~~~~~~~~~py~I~~~~~~~~~g~~~g 189 (1163)
T PRK09419 121 KAM---NALGYD-AGTLGNHEFNYGLDFLDGTIKG-------ANFPVLNANVKYKNGKNVYTPYKIKEKTVTDENGKKQG 189 (1163)
T ss_pred HHH---hhcCcc-EEeecccccccCHHHHHHHHhc-------CCCCEEEeeeecCCCCcccCCEEEEEEEeeccCCCCCC
Confidence 111 122222 57799999642 233322111 12346888985432 2234456 89
Q ss_pred cEEEEEecccCCCCC----C-C--CCCCHHHHHHHHHhhc--CCCCcc--EEEeCCCCccccccccccccccCcCCCCCC
Q 007415 118 LSVAYLSGRQSSEGQ----Q-F--GTYSQDDVDALRALAE--EPGIVD--LFLTNEWPSGVTNKAAASDMLVGISDSSNT 186 (604)
Q Consensus 118 lrIa~lgG~~~~~~~----~-~--~~~te~d~~~L~~l~~--~~~~vD--ILLTh~wP~gi~~~~~~~~~~~~~~~~~~G 186 (604)
+|||.+|=.-+.-.. . . ..++ +.++++++... ...++| |+|+|.--..- . ...|
T Consensus 190 vkIgiiG~~~p~~~~~~~~~~~g~~~~~-d~v~~~~~~v~~lk~~gaDvII~l~H~G~~~~----~----------~~~~ 254 (1163)
T PRK09419 190 VKVGYIGFVPPQIMTWDKKNLKGKVEVK-NIVEEANKTIPEMKKGGADVIVALAHSGIESE----Y----------QSSG 254 (1163)
T ss_pred eEEEEEecCCcchhhcchhhccCcEEEC-CHHHHHHHHHHHHHhcCCCEEEEEeccCcCCC----C----------CCCC
Confidence 999999976432110 0 0 1121 12222222110 023566 47788643211 0 0112
Q ss_pred -cHHHHHHHHHh-CCCEEEEccCCCcccccccccC-------CCcceeEEEEcCCCCC
Q 007415 187 -DSTVSELVAEI-KPRYHIAGSKGVFYAREPYSNV-------DAVHVTRFLGLAPVGN 235 (604)
Q Consensus 187 -s~~i~~l~~~l-kPrYhf~Gh~~~fyEr~Py~~~-------~~~~~TRFI~L~~~gn 235 (604)
...+.+|++++ .--..+.||.|..+.-..|... .....|-.+-.|.+|+
T Consensus 255 ~en~~~~la~~~~gID~Il~GHsH~~~~~~~~~~~~~~~~~~~~i~g~~ivqag~~g~ 312 (1163)
T PRK09419 255 AEDSVYDLAEKTKGIDAIVAGHQHGLFPGADYKGVPQFDNAKGTINGIPVVMPKSWGK 312 (1163)
T ss_pred cchHHHHHHHhCCCCcEEEeCCCcccccCcccccccccccccceECCEEEEccChhhc
Confidence 22445666554 4568899999887653333211 0123455666666654
No 129
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=92.83 E-value=0.23 Score=48.87 Aligned_cols=68 Identities=18% Similarity=0.371 Sum_probs=49.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhcC--CCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCC
Q 007415 5 RILLCGDVLGRLNQLFKRVQSVNKSAG--PFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVG 76 (604)
Q Consensus 5 KILv~GDvhG~~~~l~~kv~~l~~k~G--pfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~ 76 (604)
-|-||||+||.|-.|.+..+. .| |----|..|||..-+...++.+.-++.-..+-|..+-.+-|||+.
T Consensus 47 PVTvCGDIHGQFyDL~eLFrt----gG~vP~tnYiFmGDfVDRGyySLEtfT~l~~LkaryP~~ITLlRGNHEs 116 (306)
T KOG0373|consen 47 PVTVCGDIHGQFYDLLELFRT----GGQVPDTNYIFMGDFVDRGYYSLETFTLLLLLKARYPAKITLLRGNHES 116 (306)
T ss_pred CeeEeeccchhHHHHHHHHHh----cCCCCCcceEEeccccccccccHHHHHHHHHHhhcCCceeEEeeccchh
Confidence 378999999999888765542 33 444567899998766555666666555456678888999999985
No 130
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=92.74 E-value=1.2 Score=45.75 Aligned_cols=183 Identities=13% Similarity=0.111 Sum_probs=89.1
Q ss_pred CcEEEEecCCCCCC---------------------hhhHHHHHHHhcccCCCCCcEEEEcCCCCChHHHHHH--Hhcccc
Q 007415 33 FDAVLCVGQFFPDS---------------------SELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLA--ASKNSA 89 (604)
Q Consensus 33 fD~vi~~GDff~~~---------------------~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~~l~~--l~~~~~ 89 (604)
+.-||++||..... .....++..||+... -.+|+-.+|||||-....+-+ +...-
T Consensus 43 I~rlIIaGn~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~l~~l~-~~i~V~imPG~~Dp~~~~lPQqplh~~l- 120 (257)
T cd07387 43 IVRLIIAGNSLSKSTQGKDSQTKARYLTKKSSAASVEAVKELDNFLSQLA-SSVPVDLMPGEFDPANHSLPQQPLHRCL- 120 (257)
T ss_pred eEEEEEECCcccccccccchhhhhhccccccchhhHHHHHHHHHHHHhhh-cCCeEEECCCCCCcccccCCCCCCCHHH-
Confidence 44699999985531 112334556665433 468999999999832211111 00000
Q ss_pred ccCcccCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcCCCCccEEEeCCCCccccc
Q 007415 90 NQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNEWPSGVTN 169 (604)
Q Consensus 90 ~~~~~~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l~~~~~~vDILLTh~wP~gi~~ 169 (604)
|+. +. --.|+..+..-..++++|++|.+.+|..-.+-.....+ ++.++.|+.+.+ + =|-.|..= +
T Consensus 121 ---fp~-s~-~~~~~~~vtNP~~~~i~g~~vLgtsGqni~Di~ky~~~-~~~l~~me~~L~--w------rHlaPTaP-D 185 (257)
T cd07387 121 ---FPK-SS-NYSTLNLVTNPYEFSIDGVRVLGTSGQNVDDILKYSSL-ESRLDILERTLK--W------RHIAPTAP-D 185 (257)
T ss_pred ---hhc-cc-ccCCcEEeCCCeEEEECCEEEEEECCCCHHHHHHhCCC-CCHHHHHHHHHH--h------cccCCCCC-C
Confidence 000 00 01355555544466899999999999753211000011 122333333211 0 12233210 0
Q ss_pred cccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcccccccccCCCcceeEEEEcCCCCCcccceeEEEeccC
Q 007415 170 KAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKEKQKFIHALSPT 248 (604)
Q Consensus 170 ~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~~~gn~~K~Kw~yAf~i~ 248 (604)
... ..| ...-+-++-.--|-..|+||.+.|--+. |.+. ....+|.|++..|-. -.-+--+++.
T Consensus 186 TL~--~yP---------~~~~Dpfvi~~~PhVyf~Gnq~~f~t~~-~~~~-~~~~v~lv~vP~Fs~---t~~~vlvdl~ 248 (257)
T cd07387 186 TLW--CYP---------FTDRDPFILEECPHVYFAGNQPKFGTKL-VEGE-EGQRVLLVCVPSFSK---TGTAVLVNLR 248 (257)
T ss_pred ccc--ccc---------CCCCCceeecCCCCEEEeCCCcceeeeE-EEcC-CCCeEEEEEeCCcCc---CCEEEEEECC
Confidence 000 000 0001122223459999999987663332 4443 356799999999953 2334444443
No 131
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=92.68 E-value=0.27 Score=51.20 Aligned_cols=71 Identities=8% Similarity=0.144 Sum_probs=47.0
Q ss_pred CEEEEEcCCCCCHHH--HHHHHHHHHhhcCCCcEEEEecCCCCC-ChhhHHHHHHHhcccCCCCCcEEEEcCCCCCh
Q 007415 4 PRILLCGDVLGRLNQ--LFKRVQSVNKSAGPFDAVLCVGQFFPD-SSELLDEFMNYVEGRSEIPIPTYFIGDYGVGA 77 (604)
Q Consensus 4 ~KILv~GDvhG~~~~--l~~kv~~l~~k~GpfD~vi~~GDff~~-~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~ 77 (604)
.||+.++|+|-..-. ..+.+.++-... | |+|++.||++.- .......+...|.. .+.+.++|++.||||-.
T Consensus 45 ~~iv~lSDlH~~~~~~~~~~~~~~i~~~~-~-DlivltGD~~~~~~~~~~~~~~~~L~~-L~~~~gv~av~GNHd~~ 118 (284)
T COG1408 45 LKIVQLSDLHSLPFREEKLALLIAIANEL-P-DLIVLTGDYVDGDRPPGVAALALFLAK-LKAPLGVFAVLGNHDYG 118 (284)
T ss_pred eEEEEeehhhhchhhHHHHHHHHHHHhcC-C-CEEEEEeeeecCCCCCCHHHHHHHHHh-hhccCCEEEEecccccc
Confidence 589999999986433 222233332233 4 999999999773 33334445566643 45789999999999743
No 132
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
Probab=92.23 E-value=1.1 Score=47.78 Aligned_cols=62 Identities=18% Similarity=0.075 Sum_probs=40.0
Q ss_pred EEEEeccccCCCCCCCHHHHHHHHH-HHHHHHHHHHhcCC-ceEEEe---eccCC-CCeeEEEEEecC
Q 007415 426 VLVIPVEHVPNTISTSPECEKELGR-FQNSLMMYYKNQGK-EAVFFE---WLSKR-GTHANLQAVPIP 487 (604)
Q Consensus 426 ~LIiP~~H~~s~~~l~~~~~~Ei~~-~~~~L~~~~~~~g~-~~v~~E---~~~~~-~~H~HihvvPvp 487 (604)
++|-.-.|..++.+++.+.+..+.. +++.+.++.+..+. -+.+|+ ..++. ..|-|.|++-.|
T Consensus 96 Vii~sp~H~~~l~~~~~~~i~~v~~~~~~r~~~l~~~~~~~yv~if~N~G~~aGaSl~HpH~Qi~a~~ 163 (329)
T cd00608 96 VICFSPDHNLTLAEMSVAEIREVVEAWAERTRELGKNPRIKYVQIFENKGAEMGASLPHPHGQIWALP 163 (329)
T ss_pred EEEECCcccCChhhCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeecCcccccCCCCCCeeeeeCC
Confidence 5577889999999999887777664 45555555543333 245566 22222 479999987543
No 133
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=92.21 E-value=0.58 Score=43.94 Aligned_cols=70 Identities=13% Similarity=0.151 Sum_probs=45.7
Q ss_pred CCCCEEEEEcCCCC------------CHHHHHH-HHHHHHhhcCCCcEEEEecCCCCCC--hhhHHHHHHHhcccCCCCC
Q 007415 1 MSPPRILLCGDVLG------------RLNQLFK-RVQSVNKSAGPFDAVLCVGQFFPDS--SELLDEFMNYVEGRSEIPI 65 (604)
Q Consensus 1 m~~~KILv~GDvhG------------~~~~l~~-kv~~l~~k~GpfD~vi~~GDff~~~--~~~~~~~~~~l~g~~~~p~ 65 (604)
|+..+|+++||.|= +++..-+ .+..+++--+|=|.|-.+|||-... ..+...+.+.|.|.
T Consensus 1 ~sm~mmyfisDtHfgh~nvi~~~pfsn~~ehd~vil~N~nntv~p~D~lwhLGDl~~~~n~~~~a~~IlerLnGr----- 75 (186)
T COG4186 1 ASMTMMYFISDTHFGHKNVISMRPFSNPDEHDEVILSNWNNTVGPDDVLWHLGDLSSGANRERAAGLILERLNGR----- 75 (186)
T ss_pred CceeEEEEecccccCCcceeecCCCCCHHHHhHHHHHhHHhcCCccceEEEecccccccchhhHHHHHHHHcCCc-----
Confidence 56668999999984 2222211 2455566567999999999995432 23334455555553
Q ss_pred cEEEEcCCCCC
Q 007415 66 PTYFIGDYGVG 76 (604)
Q Consensus 66 ptyfv~GNh~~ 76 (604)
..+|+|||+-
T Consensus 76 -khlv~GNhDk 85 (186)
T COG4186 76 -KHLVPGNHDK 85 (186)
T ss_pred -EEEeeCCCCC
Confidence 4789999973
No 134
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=91.96 E-value=0.33 Score=48.71 Aligned_cols=67 Identities=18% Similarity=0.364 Sum_probs=46.3
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHhhcC--CCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCC
Q 007415 6 ILLCGDVLGRLNQLFKRVQSVNKSAG--PFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVG 76 (604)
Q Consensus 6 ILv~GDvhG~~~~l~~kv~~l~~k~G--pfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~ 76 (604)
|-||||+||.|..+.+..+ ..| |--=-|.+||+..-+....+.+.-++.=+..-|--+-.+-||||.
T Consensus 45 vtvcGDIHGQf~Dllelf~----igG~~~~t~YLFLGDyVDRG~~SvEt~lLLl~lK~rYP~ritLiRGNHEs 113 (303)
T KOG0372|consen 45 VTVCGDIHGQFYDLLELFR----IGGDVPETNYLFLGDYVDRGYYSVETFLLLLALKVRYPDRITLIRGNHES 113 (303)
T ss_pred cEEeecccchHHHHHHHHH----hCCCCCCCceEeecchhccccchHHHHHHHHHHhhcCcceeEEeeccchh
Confidence 7899999999998876553 334 334567899997654433444444444345567778899999995
No 135
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=91.58 E-value=0.26 Score=48.28 Aligned_cols=46 Identities=22% Similarity=0.115 Sum_probs=28.6
Q ss_pred CCCcEEEEecCCCCCChhhHHHHHHHhcc-------c-CC--------------CCCcEEEEcCCCCC
Q 007415 31 GPFDAVLCVGQFFPDSSELLDEFMNYVEG-------R-SE--------------IPIPTYFIGDYGVG 76 (604)
Q Consensus 31 GpfD~vi~~GDff~~~~~~~~~~~~~l~g-------~-~~--------------~p~ptyfv~GNh~~ 76 (604)
...|.|+++||+|+..-...++|.+++.. . .. -.+|++.|+||||.
T Consensus 43 l~Pd~V~fLGDLfd~~w~~D~ef~~~~~RF~~if~~~~~~~~~~~~~~~~~~~~~~i~~i~V~GNHDI 110 (193)
T cd08164 43 LKPDAVVVLGDLFSSQWIDDEEFAKRADRYRRRFFGRNDWQVGNISLAARTFEDGKTPLINIAGNHDV 110 (193)
T ss_pred cCCCEEEEeccccCCCcccHHHHHHHHHHHHHHhcCCcccccccccccccccccCCceEEEECCcccC
Confidence 35799999999997632222333332221 0 10 14889999999984
No 136
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=91.49 E-value=0.51 Score=47.50 Aligned_cols=67 Identities=19% Similarity=0.293 Sum_probs=43.4
Q ss_pred CEEEEEcCCCCCHHHHH----------------HHHHHHHhhcCCCcEEEEecCCCCC---Ch----hhHHHHHHHhccc
Q 007415 4 PRILLCGDVLGRLNQLF----------------KRVQSVNKSAGPFDAVLCVGQFFPD---SS----ELLDEFMNYVEGR 60 (604)
Q Consensus 4 ~KILv~GDvhG~~~~l~----------------~kv~~l~~k~GpfD~vi~~GDff~~---~~----~~~~~~~~~l~g~ 60 (604)
-+.||++|+|=.++..+ +++.++-.+.+ .+.||++||++-+ .. .....|.+++.+.
T Consensus 20 ~~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~~~-p~~lIilGD~KH~~~~~~~~e~~~~~~f~~~~~~~ 98 (235)
T COG1407 20 GRTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIERYG-PKRLIILGDLKHEFGKSLRQEKEEVREFLELLDER 98 (235)
T ss_pred CcEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHhcC-CCEEEEcCccccccCccccccHHHHHHHHHHhccC
Confidence 36899999996555444 55555555664 6999999998543 11 1222344444321
Q ss_pred CCCCCcEEEEcCCCCC
Q 007415 61 SEIPIPTYFIGDYGVG 76 (604)
Q Consensus 61 ~~~p~ptyfv~GNh~~ 76 (604)
-+.+|.||||.
T Consensus 99 -----evi~i~GNHD~ 109 (235)
T COG1407 99 -----EVIIIRGNHDN 109 (235)
T ss_pred -----cEEEEeccCCC
Confidence 48999999985
No 137
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=91.29 E-value=0.41 Score=52.61 Aligned_cols=60 Identities=18% Similarity=0.313 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhhcCCCcEEEEecCCCCCCh-hhHHHHHHHhccc-------------------------CCCCCcEEE
Q 007415 16 LNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS-ELLDEFMNYVEGR-------------------------SEIPIPTYF 69 (604)
Q Consensus 16 ~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~-~~~~~~~~~l~g~-------------------------~~~p~ptyf 69 (604)
++.++..|++|+++. |||++|.+||...... .++.-+.+.|+|. ....+|-|.
T Consensus 84 ~~AaVqtvNal~~~~-p~df~is~GD~~nn~~~nElrWyidvldG~~I~p~SG~~~~~e~v~~~~p~~a~GL~~~iPWY~ 162 (492)
T TIGR03768 84 LDAAVQTVNDLHKRD-RFDFGISLGDACNSTQYNELRWYIDVLDGKPITPSSGAHAGADTIDYQKPFQAAGLDKSIPWYQ 162 (492)
T ss_pred HHHHHHHHHHhhcCC-CceEEEeccccccchhHHHHHHHHHHhcCCeeccCCCCCCCccCCCCCCcccccccCCCCceEE
Confidence 566777788776544 9999999999876532 2344455666653 112389999
Q ss_pred EcCCCCC
Q 007415 70 IGDYGVG 76 (604)
Q Consensus 70 v~GNh~~ 76 (604)
+.||||.
T Consensus 163 v~GNHD~ 169 (492)
T TIGR03768 163 VLGNHDH 169 (492)
T ss_pred eecCCcc
Confidence 9999985
No 138
>COG4360 APA2 ATP adenylyltransferase (5',5'''-P-1,P-4-tetraphosphate phosphorylase II) [Nucleotide transport and metabolism]
Probab=90.75 E-value=0.37 Score=48.00 Aligned_cols=75 Identities=21% Similarity=0.197 Sum_probs=42.7
Q ss_pred EEECCEEEE-EecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCceEEEe--eccCC-CCeeEE
Q 007415 406 VSVGEYYYC-ALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFFE--WLSKR-GTHANL 481 (604)
Q Consensus 406 vs~g~~~yl-~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~~g~~~v~~E--~~~~~-~~H~Hi 481 (604)
+.-.+..|+ .++|.|+.+-|+|||-.+--.--..|+...+.-+.+.. ..-+ +.+|+. -.++. -.|-|+
T Consensus 87 vg~~s~th~~llNKF~VVdeHlLiVTrefedQ~s~LTl~Df~ta~~vL------~~ld--glvFYNsGp~aGaSq~HkHL 158 (298)
T COG4360 87 VGDISDTHKLLLNKFPVVDEHLLIVTREFEDQESALTLADFTTAYAVL------CGLD--GLVFYNSGPIAGASQDHKHL 158 (298)
T ss_pred ccCCchhHhhhhhcCCcccceeEEeehhhhhccccCCHHHHHHHHHHH------hccc--ceEEecCCCCcCcCCCccce
Confidence 333444564 57899999999999986432222222222111111111 1112 378887 23333 479999
Q ss_pred EEEecCc
Q 007415 482 QAVPIPT 488 (604)
Q Consensus 482 hvvPvp~ 488 (604)
|+||.|-
T Consensus 159 Qi~pmPf 165 (298)
T COG4360 159 QIVPMPF 165 (298)
T ss_pred eEeeccc
Confidence 9999994
No 139
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=89.54 E-value=0.38 Score=51.09 Aligned_cols=206 Identities=13% Similarity=0.173 Sum_probs=103.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChHH-----
Q 007415 5 RILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAK----- 79 (604)
Q Consensus 5 KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~----- 79 (604)
=|.||||+||++..|...+......- |-.-.+.+||...-+....+-+.-+++-.+..|--++.+-||||...-
T Consensus 60 PV~i~GDiHGq~~DLlrlf~~~g~~p-p~~~ylFLGDYVDRG~~slE~i~LL~a~Ki~yp~~~~lLRGNHE~~~in~~yG 138 (331)
T KOG0374|consen 60 PVKIVGDIHGQFGDLLRLFDLLGSFP-PDQNYVFLGDYVDRGKQSLETICLLFALKIKYPENVFLLRGNHECASINRIYG 138 (331)
T ss_pred CEEEEccCcCCHHHHHHHHHhcCCCC-CcccEEEecccccCCccceEEeehhhhhhhhCCceEEEeccccccccccceee
Confidence 38999999999998886665432111 456778999985433322222223333345677778999999996421
Q ss_pred HHHHHhccccccCcccCCceec-CCEE-EcCCCCeEEEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHhhc-CCC--C
Q 007415 80 VLLAASKNSANQGFKMDGFKVT-DNLF-WLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAE-EPG--I 154 (604)
Q Consensus 80 ~l~~l~~~~~~~~~~~~g~ei~-~Nl~-~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l~~-~~~--~ 154 (604)
++++... .+ .....|-+ .+.+ +|.-.. .+++..+-.=||..+. - -+.+++.++..-.. ... -
T Consensus 139 FydE~~r-r~----~~~~~w~~F~~~f~~mp~~a--~i~~kI~CmhGGlsp~-l-----~~~~~i~~i~rp~~~~~~gll 205 (331)
T KOG0374|consen 139 FYDECKR-RY----GEIKLWKAFNDAFNCLPLAA--LIDGKILCMHGGLSPH-L-----KSLDQIRAIPRPTDSPDKGLL 205 (331)
T ss_pred eHHHHHH-hc----chHHHHHHHHHHHhhCchhh--eecceEEEecCCCChh-h-----cChHHHhhccCCcCCCcccee
Confidence 2222210 00 00000000 0011 111001 1334333333443221 1 12344444432110 111 2
Q ss_pred ccEEEeCCCC--ccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccC--CCcccccccccCCCcceeEEEEc
Q 007415 155 VDLFLTNEWP--SGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSK--GVFYAREPYSNVDAVHVTRFLGL 230 (604)
Q Consensus 155 vDILLTh~wP--~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~--~~fyEr~Py~~~~~~~~TRFI~L 230 (604)
.|+|-++.=. .|..... .++. ...|...++++++++.=...+=||. ...|| |... ..-+|-|-++
T Consensus 206 ~DLlWsdp~~~~~g~~~n~------Rg~s-~~fg~~~v~~f~~~~~ldlivRaHqvv~dGye---ffa~-r~lvTIFSAP 274 (331)
T KOG0374|consen 206 CDLLWSDPDDDVPGWEEND------RGVS-FTFGPAVVEDFCKKLDLDLIVRAHQVVEDGYE---FFAG-RKLVTIFSAP 274 (331)
T ss_pred eeeeecCCCCCCCCcccCC------Ccee-eEecHHHHHHHHHHhCcceEEEcCccccccce---EecC-ceEEEEecCc
Confidence 4555333111 1111110 1111 2478999999999999999999993 23454 2232 4669999988
Q ss_pred CCCCC
Q 007415 231 APVGN 235 (604)
Q Consensus 231 ~~~gn 235 (604)
.=.|.
T Consensus 275 ~Ycg~ 279 (331)
T KOG0374|consen 275 NYCGE 279 (331)
T ss_pred hhccc
Confidence 77776
No 140
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=88.90 E-value=0.86 Score=49.45 Aligned_cols=74 Identities=22% Similarity=0.255 Sum_probs=45.1
Q ss_pred CCEEEEEcCCC--C---------CHHHH-----HHHHHHHHhhcCCCcEEEEecCCCCCCh-hhHHHHHHHhccc-----
Q 007415 3 PPRILLCGDVL--G---------RLNQL-----FKRVQSVNKSAGPFDAVLCVGQFFPDSS-ELLDEFMNYVEGR----- 60 (604)
Q Consensus 3 ~~KILv~GDvh--G---------~~~~l-----~~kv~~l~~k~GpfD~vi~~GDff~~~~-~~~~~~~~~l~g~----- 60 (604)
..||++++|.| | .++.+ ..+.-.....-...|+++++||+|.++. ...++|.+++...
T Consensus 48 ~~ki~~vaDPQilg~~~~~~~~~~Ldk~~~D~~lrr~f~~~~~~lkPdvvffLGDLfDeG~~~~~eEf~~~~~RfkkIf~ 127 (410)
T KOG3662|consen 48 STKILLVADPQILGNWPKKFLVSWLDKYGNDWYLRRSFDMSQWRLKPDVVFFLGDLFDEGQWAGDEEFKKRYERFKKIFG 127 (410)
T ss_pred ceEEEEecCchhcCCCCCccccchHHhhhhHHHHHHHHHHHHhccCCCEEEEeccccccCccCChHHHHHHHHHHHHhhC
Confidence 46899999976 3 12221 1122222223356899999999998532 1234455544321
Q ss_pred CCCCCcEEEEcCCCCC
Q 007415 61 SEIPIPTYFIGDYGVG 76 (604)
Q Consensus 61 ~~~p~ptyfv~GNh~~ 76 (604)
.+-.+++..++||||.
T Consensus 128 ~k~~~~~~~i~GNhDI 143 (410)
T KOG3662|consen 128 RKGNIKVIYIAGNHDI 143 (410)
T ss_pred CCCCCeeEEeCCcccc
Confidence 2357899999999985
No 141
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=88.88 E-value=2.9 Score=48.50 Aligned_cols=113 Identities=12% Similarity=-0.098 Sum_probs=61.6
Q ss_pred CCEEEEEcCCCCCHHH----------------HHHHHHHHHhhcCCCcEEEEecCCCCCChhhH------------HHHH
Q 007415 3 PPRILLCGDVLGRLNQ----------------LFKRVQSVNKSAGPFDAVLCVGQFFPDSSELL------------DEFM 54 (604)
Q Consensus 3 ~~KILv~GDvhG~~~~----------------l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~------------~~~~ 54 (604)
.++||.+.|+||++.. +...++++.+++ +--++|-.||++....-.. .-..
T Consensus 2 ~l~Il~TnDlH~~l~~~dy~~~~~~~~~Glar~atli~~~R~e~-~n~lllD~GD~~qGsp~~~~~~~~~~~~~~~~p~~ 80 (626)
T TIGR01390 2 DLRIVETTDLHTNLMDYDYYKDKPTDKFGLTRTATLIKQARAEV-KNSVLVDNGDLIQGSPLGDYMAAQGLKAGQMHPVY 80 (626)
T ss_pred eEEEEEEcCCccCccCCcccCCCCCCCcCHHHHHHHHHHHHhhC-CCeEEEECCCcCCCccchhhhhhccccCCCcChHH
Confidence 4689999999999743 333344443333 4568999999865421100 0011
Q ss_pred HHhcccCCCCCcEEEEcCCCCChH--HHHHHHhccccccCcccCCceecCCEEEcC-------CCCeEEE-----c----
Q 007415 55 NYVEGRSEIPIPTYFIGDYGVGAA--KVLLAASKNSANQGFKMDGFKVTDNLFWLK-------GSGNFTL-----H---- 116 (604)
Q Consensus 55 ~~l~g~~~~p~ptyfv~GNh~~~~--~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg-------~~gv~~~-----~---- 116 (604)
+.+ ..+++- ..+.||||-.. +.+..+-.. ..-..+|.|++... ...|++. +
T Consensus 81 ~~m---N~lgyD-a~tlGNHEFd~G~~~L~~~~~~-------a~fP~l~aNv~~~~~~~~~~~py~I~~~~~~~~~G~~~ 149 (626)
T TIGR01390 81 KAM---NLLKYD-VGNLGNHEFNYGLPFLKQAIAA-------AKFPIVNANVVDAGTGQPAFTPYLIQERSVVDTDGKPH 149 (626)
T ss_pred HHH---hhcCcc-EEecccccccccHHHHHHHHHh-------CCCCEEEEEEEeCCCCCcccCCeEEEEEEeeccCCCcc
Confidence 112 122222 47889999542 233322111 12346888886532 1223333 2
Q ss_pred CcEEEEEeccc
Q 007415 117 GLSVAYLSGRQ 127 (604)
Q Consensus 117 GlrIa~lgG~~ 127 (604)
|+||+.+|=.-
T Consensus 150 ~~kIGiIG~~~ 160 (626)
T TIGR01390 150 TLKVGYIGFVP 160 (626)
T ss_pred ceEEEEEEecC
Confidence 69999999764
No 142
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=88.21 E-value=3.2 Score=49.19 Aligned_cols=42 Identities=19% Similarity=0.132 Sum_probs=27.8
Q ss_pred CCEEEEEcCCCCCHHH----------------HHHHHHHHHhhcCCCcEEEEecCCCCC
Q 007415 3 PPRILLCGDVLGRLNQ----------------LFKRVQSVNKSAGPFDAVLCVGQFFPD 45 (604)
Q Consensus 3 ~~KILv~GDvhG~~~~----------------l~~kv~~l~~k~GpfD~vi~~GDff~~ 45 (604)
.++||.+.|+||++.. +-..|+++.+++ +--++|-.||++..
T Consensus 39 ~L~IL~TnDiHg~l~~~dy~~~~~~~~~Glar~AtlI~~~R~e~-~ntlllD~GD~iqG 96 (780)
T PRK09418 39 NLRILETSDIHVNLMNYDYYQTKTDNKVGLVQTATLVNKAREEA-KNSVLFDDGDALQG 96 (780)
T ss_pred EEEEEEEeecCCCCcCcCccccCCcCCCCHHHHHHHHHHHHHhC-CCeEEEECCCCCCC
Confidence 3689999999998632 223333333333 45799999998643
No 143
>KOG2958 consensus Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=88.15 E-value=0.98 Score=46.35 Aligned_cols=61 Identities=20% Similarity=0.245 Sum_probs=50.0
Q ss_pred CCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 007415 400 VESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYK 460 (604)
Q Consensus 400 ~~~~lIvs~g~~~yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~ 460 (604)
.+++.||-++++..+..|=-.+-|--+||||++|+.++.++++-+..++....+.|..-|.
T Consensus 212 l~Kervv~enehfivvvPywA~wPfEtllipk~h~~~~~~l~~~~k~dLasiLK~ll~Kyd 272 (354)
T KOG2958|consen 212 LEKERVVVENEHFIVVVPYWATWPFETLLIPKRHVSRFHELDEVEKVDLASILKLLLIKYD 272 (354)
T ss_pred hhhceEEeecCceEEEeehhhcCcceeeeechhhhhhhcccchHHHhhHHHHHHHHHHHHH
Confidence 4678899888888888876667788899999999999999999888888777666665544
No 144
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=87.85 E-value=2.1 Score=49.78 Aligned_cols=110 Identities=11% Similarity=-0.014 Sum_probs=61.5
Q ss_pred CCEEEEEcCCCCCHH----------------HHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHH-------------
Q 007415 3 PPRILLCGDVLGRLN----------------QLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEF------------- 53 (604)
Q Consensus 3 ~~KILv~GDvhG~~~----------------~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~------------- 53 (604)
.++||.+.|+||++. .+-..++++.+++ +--++|-.||++....- .++
T Consensus 25 ~L~IL~TnDlHg~l~~~dy~~~~~~~~~Glar~atli~~~R~e~-~n~llvD~GD~~qGsp~--~~~~~~~~~~~g~~~p 101 (649)
T PRK09420 25 DLRIMETTDLHSNMMDFDYYKDKPTEKFGLVRTASLIKAARAEA-KNSVLVDNGDLIQGSPL--GDYMAAKGLKAGDVHP 101 (649)
T ss_pred eEEEEEEcccccCccCCccccCCcccccCHHHHHHHHHHHHHhC-CCEEEEECCCcCCCchh--hhhhhhccccCCCcch
Confidence 578999999999863 2333344443333 45689999998654221 111
Q ss_pred -HHHhcccCCCCCcEEEEcCCCCChH--HHHHHHhccccccCcccCCceecCCEEEcCC-------CCeEEE-----c--
Q 007415 54 -MNYVEGRSEIPIPTYFIGDYGVGAA--KVLLAASKNSANQGFKMDGFKVTDNLFWLKG-------SGNFTL-----H-- 116 (604)
Q Consensus 54 -~~~l~g~~~~p~ptyfv~GNh~~~~--~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~-------~gv~~~-----~-- 116 (604)
.+.+ ..+++ -..+.||||-.. +.+..+-.. ..-..||.|++.... .-|++. +
T Consensus 102 ~i~am---N~lgy-Da~tlGNHEFd~G~~~L~~~~~~-------a~fP~l~ANv~~~~~~~~~~~py~I~e~~v~~~~G~ 170 (649)
T PRK09420 102 VYKAM---NTLDY-DVGNLGNHEFNYGLDYLKKALAG-------AKFPYVNANVIDAKTGKPLFTPYLIKEKEVKDKDGK 170 (649)
T ss_pred HHHHH---HhcCC-cEEeccchhhhcCHHHHHHHHhc-------CCCCEEEEEEEecCCCCcccCCeEEEEEEeeccCCC
Confidence 1111 11222 267889999542 233332111 123468889874321 223333 3
Q ss_pred --CcEEEEEecc
Q 007415 117 --GLSVAYLSGR 126 (604)
Q Consensus 117 --GlrIa~lgG~ 126 (604)
|+||+.+|=.
T Consensus 171 ~~~vkIGiIGl~ 182 (649)
T PRK09420 171 EHTIKIGYIGFV 182 (649)
T ss_pred ccceEEEEEEec
Confidence 5899999965
No 145
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=87.59 E-value=2.1 Score=50.93 Aligned_cols=112 Identities=13% Similarity=-0.027 Sum_probs=62.0
Q ss_pred CCEEEEEcCCCCCHH----------------HHHHHHHHHHhhcCCCcEEEEecCCCCCChhh----------HHH---H
Q 007415 3 PPRILLCGDVLGRLN----------------QLFKRVQSVNKSAGPFDAVLCVGQFFPDSSEL----------LDE---F 53 (604)
Q Consensus 3 ~~KILv~GDvhG~~~----------------~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~----------~~~---~ 53 (604)
.++||.+.|+||++. .+-..|+++.+++ +--++|-.||++....-. .++ .
T Consensus 115 ~LtIL~TnDiHg~l~~~dy~~~~~~~~~GlaRlAtlI~~~Rae~-~NtLllD~GD~iQGSpl~~~~a~~~~~~~g~~~P~ 193 (814)
T PRK11907 115 DVRILSTTDLHTNLVNYDYYQDKPSQTLGLAKTAVLIEEAKKEN-PNVVLVDNGDTIQGTPLGTYKAIVDPVEEGEQHPM 193 (814)
T ss_pred EEEEEEEEeecCCcccccccccCccccccHHHHHHHHHHHHHhC-CCEEEEecCCCCCCCcccchhhhccccccCcchHH
Confidence 468999999999864 2333344443333 456899999986532100 000 1
Q ss_pred HHHhcccCCCCCcEEEEcCCCCChH--HHHHHHhccccccCcccCCceecCCEEEcCC-------CCeEEE-----cC--
Q 007415 54 MNYVEGRSEIPIPTYFIGDYGVGAA--KVLLAASKNSANQGFKMDGFKVTDNLFWLKG-------SGNFTL-----HG-- 117 (604)
Q Consensus 54 ~~~l~g~~~~p~ptyfv~GNh~~~~--~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg~-------~gv~~~-----~G-- 117 (604)
.+.+ ..+++- ..+.||||-.. +.+..+-.. ..--.||.||+.... .-|++. +|
T Consensus 194 i~am---N~LGyD-A~tLGNHEFDyG~d~L~~~l~~-------a~fPvl~ANV~~~~~~~~~~~PY~I~e~~~~d~~G~~ 262 (814)
T PRK11907 194 YAAL---EALGFD-AGTLGNHEFNYGLDYLEKVIAT-------ANMPIVNANVLDPTTGDFLYTPYTIVTKTFTDTEGKK 262 (814)
T ss_pred HHHH---hccCCC-EEEechhhcccCHHHHHHHHHh-------CCCCEEEeeeeecCCCCccCCCeEEEEEEEecCCCcc
Confidence 2222 222232 57889999642 233332111 123468889875432 223333 55
Q ss_pred --cEEEEEecc
Q 007415 118 --LSVAYLSGR 126 (604)
Q Consensus 118 --lrIa~lgG~ 126 (604)
+||+.+|=.
T Consensus 263 ~~vKIGiIGlv 273 (814)
T PRK11907 263 VTLNIGITGIV 273 (814)
T ss_pred cceEEEEEEeC
Confidence 899999965
No 146
>PLN03103 GDP-L-galactose-hexose-1-phosphate guanyltransferase; Provisional
Probab=87.24 E-value=1.1 Score=48.65 Aligned_cols=69 Identities=23% Similarity=0.259 Sum_probs=39.3
Q ss_pred CEEEEEecCCCCCCCeEEEEec--cccCCCCCCCHHHHHHHHHHHHHHHHHHHh--cCCceEEEeec-cC-CCCeeEEEE
Q 007415 410 EYYYCALPKGPLVEDHVLVIPV--EHVPNTISTSPECEKELGRFQNSLMMYYKN--QGKEAVFFEWL-SK-RGTHANLQA 483 (604)
Q Consensus 410 ~~~yl~l~kgpl~~GH~LIiP~--~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~--~g~~~v~~E~~-~~-~~~H~Hihv 483 (604)
+...++++..|+.+||+||||- .|.+-..+ .+.. .-++.-+... .++ -++|... +. ..-|+|+|.
T Consensus 169 s~~~VlINvsPI~~gH~LlvP~~~~~lPQ~i~--~~~l------~la~~~a~~~~~p~f-rvgYNSlGA~ASvNHLHFQa 239 (403)
T PLN03103 169 SPNVVAINVSPIEYGHVLLVPRVLDCLPQRID--PDSF------LLALYMAAEANNPYF-RVGYNSLGAFATINHLHFQA 239 (403)
T ss_pred CccEEEEeCCCCccCeEEEcCCcccCCCeEec--HHHH------HHHHHHHHhcCCCcE-EEEecCCccccCcceeeeee
Confidence 3336678999999999999964 57765443 2222 1122222222 223 3555511 22 246999999
Q ss_pred EecC
Q 007415 484 VPIP 487 (604)
Q Consensus 484 vPvp 487 (604)
.-.+
T Consensus 240 ~yl~ 243 (403)
T PLN03103 240 YYLA 243 (403)
T ss_pred cccC
Confidence 8653
No 147
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=86.18 E-value=39 Score=33.84 Aligned_cols=105 Identities=10% Similarity=0.075 Sum_probs=51.5
Q ss_pred CCHHHHHHHHHHHHhhcCCCcEEEEecCC------C-CC-Ch---hhHHHHHHHhcccCCCCCcEEEEcCCCCChHH---
Q 007415 14 GRLNQLFKRVQSVNKSAGPFDAVLCVGQF------F-PD-SS---ELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAK--- 79 (604)
Q Consensus 14 G~~~~l~~kv~~l~~k~GpfD~vi~~GDf------f-~~-~~---~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~--- 79 (604)
.+++.+|+.+..+-+. .|++++=-.. . .. .. ....+..+.| ..+++..+-+.+||+.+..
T Consensus 22 ~~~~~~~~~v~~~~~~---~D~~~~NlE~~~~~~~~~~~~~~~~f~~~~~~~~~L---~~~G~d~~tlaNNH~fD~G~~g 95 (239)
T cd07381 22 YDFDPLFEDVKPLLRA---ADLAIGNLETPLTDKGSPAPSKYPHFRAPPEVADAL---KAAGFDVVSLANNHTLDYGEEG 95 (239)
T ss_pred CCchhHHHHHHHHHhc---CCEEEEEeecCccCCCCcCCCCceEecCCHHHHHHH---HHhCCCEEEcccccccccchHH
Confidence 3567888888877654 4777543221 0 00 00 0112233444 4467777778889986532
Q ss_pred HHHHHhccccccCcccCCceecCCEEE--cCCCCeEEEcCcEEEEEecccCC
Q 007415 80 VLLAASKNSANQGFKMDGFKVTDNLFW--LKGSGNFTLHGLSVAYLSGRQSS 129 (604)
Q Consensus 80 ~l~~l~~~~~~~~~~~~g~ei~~Nl~~--Lg~~gv~~~~GlrIa~lgG~~~~ 129 (604)
+.+.+..-. ..|+ ..+..|... ..+.-+++++|++|+.+|-....
T Consensus 96 l~~t~~~l~-~~~i----~~~g~~~~~~~~~~~~i~~~~g~kVg~ig~t~~~ 142 (239)
T cd07381 96 LLDTLDALD-EAGI----AHAGAGRNLEEARRPAILEVNGIKVAFLAYTYGT 142 (239)
T ss_pred HHHHHHHHH-HcCC----ceeECCCCHHHhcCcEEEEECCEEEEEEEEECCC
Confidence 222221000 0000 111122111 01223457899999999987653
No 148
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=85.16 E-value=2 Score=45.29 Aligned_cols=75 Identities=20% Similarity=0.116 Sum_probs=49.3
Q ss_pred CCEEEEEcCCCCCHH-------------------HHHHHHHHHHhhcCCCcEEEEecCC-CCCC-hhhHHHHHHHhcccC
Q 007415 3 PPRILLCGDVLGRLN-------------------QLFKRVQSVNKSAGPFDAVLCVGQF-FPDS-SELLDEFMNYVEGRS 61 (604)
Q Consensus 3 ~~KILv~GDvhG~~~-------------------~l~~kv~~l~~k~GpfD~vi~~GDf-f~~~-~~~~~~~~~~l~g~~ 61 (604)
+.|||.+.|.|=.+. .-..-+.++.+.. +.|+|+..||. ++.. .++...+.+-++..+
T Consensus 53 ~fKIlqvaDlH~g~g~~~~c~d~~p~~~~~csD~nTt~F~~rvL~sE-~PDlVVfTGD~i~g~~t~Da~~sl~kAvaP~I 131 (379)
T KOG1432|consen 53 TFKILQVADLHFGFGRETRCRDVLPSEEACCSDLNTTNFVSRVLASE-KPDLVVFTGDNIFGHSTQDAATSLMKAVAPAI 131 (379)
T ss_pred ceEEEEeeccccccCCCccccccCcchhhhhcCccHHHHHHHHHhcc-CCCEEEEeCCcccccccHhHHHHHHHHhhhHh
Confidence 468999999985444 0112233333333 47999999996 5432 233344556666667
Q ss_pred CCCCcEEEEcCCCCChH
Q 007415 62 EIPIPTYFIGDYGVGAA 78 (604)
Q Consensus 62 ~~p~ptyfv~GNh~~~~ 78 (604)
.-.+|--.+.||||+..
T Consensus 132 ~~~IPwA~~lGNHDdes 148 (379)
T KOG1432|consen 132 DRKIPWAAVLGNHDDES 148 (379)
T ss_pred hcCCCeEEEeccccccc
Confidence 77899999999999753
No 149
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=84.71 E-value=1.9 Score=47.87 Aligned_cols=102 Identities=23% Similarity=0.449 Sum_probs=60.8
Q ss_pred CCCCCcccceeEEEeccCCCCCCchhcccCCCCCCcCCCCccccCCCCcccccCCCCCCCCCCcccccccccccccCCCC
Q 007415 231 APVGNKEKQKFIHALSPTPAATMSAADISMKTPNTTLSPYTFLDQGSHSKEAAKRPSDSVSDSQYWRYDVSQKRQKHGGG 310 (604)
Q Consensus 231 ~~~gn~~K~Kw~yAf~i~p~~~~~~~~l~~~p~~~t~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (604)
|.|+.++- -||+|.|.|=+.- .=-+=|+|||..+. +..++|.+ ..|. |.
T Consensus 187 ~~ys~DeF--rMy~fKir~C~R~-------~shDwteCPf~Hpg-----EkARRRDP-----Rkyh-Ys----------- 235 (528)
T KOG1595|consen 187 GIYSSDEF--RMYSFKIRRCSRP-------RSHDWTECPFAHPG-----EKARRRDP-----RKYH-YS----------- 235 (528)
T ss_pred ccccccce--EEEeeeecccCCc-------cCCCcccCCccCCC-----cccccCCc-----cccc-cc-----------
Confidence 78877554 6999999987642 33578999997522 11122211 1111 10
Q ss_pred CCCCcceeeeccCCCCCCCcccccCCc----hhhhhhccccchhhhhcccCCCCCCccccCCcC
Q 007415 311 DGDKMCFKFIYSGSCPRGEKCNFRHDT----DAREQCLRGVCLDFIIKGKCEKGPECSYKHSLQ 370 (604)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 370 (604)
.-+|=.|+. |.|.+|+.|+|||-- .+.+.|-.+.|-|- |.|.+ +=|.+.|..+
T Consensus 236 --~tpCPefrk-G~C~rGD~CEyaHgvfEcwLHPa~YRT~~CkDg---~~C~R-rvCfFAH~~e 292 (528)
T KOG1595|consen 236 --STPCPEFRK-GSCERGDSCEYAHGVFECWLHPARYRTRKCKDG---GYCPR-RVCFFAHSPE 292 (528)
T ss_pred --CccCccccc-CCCCCCCccccccceehhhcCHHHhccccccCC---CCCcc-ceEeeecChH
Confidence 014545554 789999999999974 45577777777332 44444 4455555543
No 150
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=84.07 E-value=49 Score=33.20 Aligned_cols=106 Identities=11% Similarity=0.095 Sum_probs=57.3
Q ss_pred EEEEEcCCC-------CCHHHHHHHHHHHHhhcCCCcEEEEe------cCC--CCCC-h---hhHHHHHHHhcccCCCCC
Q 007415 5 RILLCGDVL-------GRLNQLFKRVQSVNKSAGPFDAVLCV------GQF--FPDS-S---ELLDEFMNYVEGRSEIPI 65 (604)
Q Consensus 5 KILv~GDvh-------G~~~~l~~kv~~l~~k~GpfD~vi~~------GDf--f~~~-~---~~~~~~~~~l~g~~~~p~ 65 (604)
+|+++||+- .+++.+|+.+..+-++ .|++++= ++- .... . ....+..+.| ..+++
T Consensus 1 ~i~~~GDi~~~~~~~~~~~~~~~~~v~~~~~~---aD~~~~NlE~~~~~~~~~~~~~~~~~f~~~~~~~~~l---~~~G~ 74 (239)
T smart00854 1 TLSFVGDVMLGRGVYKADFSPPFAGVKPLLRA---ADLAIGNLETPITGSGSPASGKKYPNFRAPPENAAAL---KAAGF 74 (239)
T ss_pred CEEEEeeecccCcccccCcchHHHHHHHHHhc---CCEeEEEeeccccCCCCCCCCCCceEecCCHHHHHHH---HHhCC
Confidence 478889972 3468888888877553 4666542 111 1100 0 0112233444 45677
Q ss_pred cEEEEcCCCCChHH---HHHHHhccccccCcccCCceecCCEEEcC---------CCCeEEEcCcEEEEEecccC
Q 007415 66 PTYFIGDYGVGAAK---VLLAASKNSANQGFKMDGFKVTDNLFWLK---------GSGNFTLHGLSVAYLSGRQS 128 (604)
Q Consensus 66 ptyfv~GNh~~~~~---~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg---------~~gv~~~~GlrIa~lgG~~~ 128 (604)
-+.-+++||+.+.. +.+.+..-. ..|+.++| +.-+++++|++||.+|-+..
T Consensus 75 d~~~laNNH~fD~G~~gl~~t~~~l~------------~a~i~~~g~~~~~~~~~~~~i~~~~g~kIg~ig~t~~ 137 (239)
T smart00854 75 DVVSLANNHSLDYGEEGLLDTLAALD------------AAGIAHVGAGRNLAEARKPAIVEVKGIKIALLAYTYG 137 (239)
T ss_pred CEEEeccCcccccchHHHHHHHHHHH------------HCCCCEeeCCCChHHhhCcEEEEECCEEEEEEEEEcC
Confidence 77778889997532 222222100 11233332 12345689999999998754
No 151
>PLN02643 ADP-glucose phosphorylase
Probab=83.89 E-value=9.2 Score=40.87 Aligned_cols=75 Identities=13% Similarity=0.162 Sum_probs=44.6
Q ss_pred EEEEeccccCCCCCCCHHHHHHHHH-HHHHHHHHHHhcCC-ceEEEeec---cCC-CCeeEEEEEecC---cchHH---H
Q 007415 426 VLVIPVEHVPNTISTSPECEKELGR-FQNSLMMYYKNQGK-EAVFFEWL---SKR-GTHANLQAVPIP---TSKAA---A 493 (604)
Q Consensus 426 ~LIiP~~H~~s~~~l~~~~~~Ei~~-~~~~L~~~~~~~g~-~~v~~E~~---~~~-~~H~HihvvPvp---~~~~~---~ 493 (604)
++|-.-+|..++.+++.+.+..+.. +++.+..+.+..+. -+.+||+. ++. ..|-|.|++-.| ..... .
T Consensus 110 Vii~sp~H~~~l~~~~~~~i~~v~~~~~~r~~~l~~~~~i~yv~iF~N~G~~aGaSl~HPH~Qi~a~~~vP~~~~~el~~ 189 (336)
T PLN02643 110 VVIETPVHSVQLSDLPARHIGEVLKAYKKRINQLQSDSRFKYVQVFKNHGASAGASMSHSHSQIIALPVVPPSVSARLDG 189 (336)
T ss_pred EEEeCCccCCChHHCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEeecCccCCcCCCCCceeeEecCcCChHHHHHHHH
Confidence 3445568999999999887777664 45555544333333 35556622 222 479999987544 44433 3
Q ss_pred HHHHHHH
Q 007415 494 VQDIFNL 500 (604)
Q Consensus 494 ~~~~f~~ 500 (604)
+..||++
T Consensus 190 ~~~y~~~ 196 (336)
T PLN02643 190 SKEYFEK 196 (336)
T ss_pred HHHHHHH
Confidence 4555554
No 152
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=83.27 E-value=6.2 Score=41.92 Aligned_cols=65 Identities=20% Similarity=0.191 Sum_probs=43.7
Q ss_pred CeEEEE--eccccCCCCCCCHHHHHHHHHH-HHHHHHHHHhcCC-ceEEEee---ccCC-CCeeEEEEEecCc
Q 007415 424 DHVLVI--PVEHVPNTISTSPECEKELGRF-QNSLMMYYKNQGK-EAVFFEW---LSKR-GTHANLQAVPIPT 488 (604)
Q Consensus 424 GH~LIi--P~~H~~s~~~l~~~~~~Ei~~~-~~~L~~~~~~~g~-~~v~~E~---~~~~-~~H~HihvvPvp~ 488 (604)
|++.|| --.|..++.+++.+...++.++ +..++++.+...+ =|.+|++ .++. ..|-|.|++-.|.
T Consensus 93 g~~~VIvesp~H~~~l~~~~~~~~~~vv~~~~e~~~~L~~~~~~~yV~iF~N~Gk~~G~S~~HPH~Qi~a~~~ 165 (338)
T COG1085 93 GKSRVIVESPDHSKTLPELPVEEIEEVVKLWQERVRELYEREKYKYVQIFENKGKAAGASLPHPHGQIVALPV 165 (338)
T ss_pred cceEEEEECCcccCccccCCHHHHHHHHHHHHHHHHHHhhccCcceEEeeeccCcccCccCCCCCcceeeccc
Confidence 655544 5589999999999988888865 5566666665333 3555662 2222 4799999987654
No 153
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=80.70 E-value=4 Score=40.05 Aligned_cols=114 Identities=12% Similarity=0.190 Sum_probs=52.9
Q ss_pred EEEEcCCCCC-HHHHHHHHHHHHhh---cCCCcEEEEecCCCCCCh------------hh----HHHHHHHhcccCCCCC
Q 007415 6 ILLCGDVLGR-LNQLFKRVQSVNKS---AGPFDAVLCVGQFFPDSS------------EL----LDEFMNYVEGRSEIPI 65 (604)
Q Consensus 6 ILv~GDvhG~-~~~l~~kv~~l~~k---~GpfD~vi~~GDff~~~~------------~~----~~~~~~~l~g~~~~p~ 65 (604)
|++++|+|-. =...++.+..+-.. ..+.+++|++|+|..... .. ...+..++.. ....+
T Consensus 1 Iv~~Sg~~~~~~~~~~~~L~~~l~~~~~~~~p~~lIl~G~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~ 79 (209)
T PF04042_consen 1 IVFASGPFLDSDNLSLEPLRDLLSGVEDASKPDVLILMGPFIDSPHPYISSGSVPDSYSFEEDFLKELDSFLES-ILPST 79 (209)
T ss_dssp EEEEES--CTTT-HHHHHHHHHHHCCCHCTTECEEEEES-SCBTTSHHHHHT---HHCCHHHHHHHHCHHHHCC-CHCCS
T ss_pred CEEEecCccCCCHhHHHHHHHHHHhccccCCCcEEEEeCCCcCccccccccccccccccccHHHHHHHHHHHhh-ccccc
Confidence 5677777654 22234444444432 236899999999976411 01 1112223321 22358
Q ss_pred cEEEEcCCCCChHHHHHHHhccccccCcccC-CceecC--CEEEcCCCCeEEEcCcEEEEEecc
Q 007415 66 PTYFIGDYGVGAAKVLLAASKNSANQGFKMD-GFKVTD--NLFWLKGSGNFTLHGLSVAYLSGR 126 (604)
Q Consensus 66 ptyfv~GNh~~~~~~l~~l~~~~~~~~~~~~-g~ei~~--Nl~~Lg~~gv~~~~GlrIa~lgG~ 126 (604)
.+++|+|++|-... .-++...- ... -..+.. ++.++..=-.+.++|++|+..+|-
T Consensus 80 ~vvlvPg~~D~~~~--~~lPq~pl----~~~~~~~~~~~~~~~~~sNP~~~~i~~~~i~~~s~d 137 (209)
T PF04042_consen 80 QVVLVPGPNDPTSS--PVLPQPPL----HSKLFPKLKKYSNIHFVSNPCRISINGQEIGVTSGD 137 (209)
T ss_dssp EEEEE--TTCTT-S---SCSB--------TTTTCHHCTTTTEEE--CSEEEEETTEEEEE-SSH
T ss_pred EEEEeCCCcccccc--CCCCCCCC----CHHHHhhhhhcCceEEeCCCeEEEEeCCcEEEECCc
Confidence 89999998874332 11111000 000 001111 266666556678999999998875
No 154
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=80.60 E-value=11 Score=38.10 Aligned_cols=102 Identities=16% Similarity=0.174 Sum_probs=59.6
Q ss_pred CEEEEEcCCCCC--HHHHHHHHHHHHhhcCCCcEEEEecCC----CCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCCh
Q 007415 4 PRILLCGDVLGR--LNQLFKRVQSVNKSAGPFDAVLCVGQF----FPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGA 77 (604)
Q Consensus 4 ~KILv~GDvhG~--~~~l~~kv~~l~~k~GpfD~vi~~GDf----f~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~ 77 (604)
||||++||+-|+ .+.+.+.+..+-+|- ..|+||+=|.. |+.... -..+++ +.++. +++.|||-=+
T Consensus 1 mriLfiGDvvGk~Gr~~v~~~Lp~lk~ky-k~dfvI~N~ENaa~G~Git~k---~y~~l~----~~G~d-viT~GNH~wd 71 (266)
T COG1692 1 MRILFIGDVVGKPGRKAVKEHLPQLKSKY-KIDFVIVNGENAAGGFGITEK---IYKELL----EAGAD-VITLGNHTWD 71 (266)
T ss_pred CeEEEEecccCcchHHHHHHHhHHHHHhh-cCcEEEEcCccccCCcCCCHH---HHHHHH----HhCCC-EEeccccccc
Confidence 799999999997 456677777776665 58999999886 333322 233343 23333 5678888533
Q ss_pred -HHHHHHHhccccccCcccCCceec----CCEEEcCCC-CeEEEcCcEEEEEe
Q 007415 78 -AKVLLAASKNSANQGFKMDGFKVT----DNLFWLKGS-GNFTLHGLSVAYLS 124 (604)
Q Consensus 78 -~~~l~~l~~~~~~~~~~~~g~ei~----~Nl~~Lg~~-gv~~~~GlrIa~lg 124 (604)
.++++-+.+.. .-+. |+. ..|++ ++++++|.+|+.+.
T Consensus 72 ~~ei~~~i~~~~---------~ilRP~N~p~~-~~G~G~~~f~~ng~ki~V~N 114 (266)
T COG1692 72 QKEILDFIDNAD---------RILRPANYPDG-TPGKGSRIFKINGKKLAVIN 114 (266)
T ss_pred chHHHHHhhccc---------ceeccCCCCCC-CCcceEEEEEeCCcEEEEEE
Confidence 33444443110 0011 222 34443 45577887777654
No 155
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=76.27 E-value=17 Score=38.97 Aligned_cols=94 Identities=14% Similarity=0.117 Sum_probs=55.9
Q ss_pred CCCcccCCCCCCCcceEEEECC--EEEEEecCCCCCC--------------------C-e-EEEEeccccCCCCCCCHHH
Q 007415 389 KECWFCLSSPSVESHLIVSVGE--YYYCALPKGPLVE--------------------D-H-VLVIPVEHVPNTISTSPEC 444 (604)
Q Consensus 389 ~~C~FC~~~~~~~~~lIvs~g~--~~yl~l~kgpl~~--------------------G-H-~LIiP~~H~~s~~~l~~~~ 444 (604)
+.|+||-.|...... | ..+ .++++-+++|... | | ++|---+|..++.+|+.+.
T Consensus 50 ~~CPfcpgne~~~~~-~--~~~w~~~rV~~N~fPal~~~~~~~~~~~~~l~~~~~~~G~~eVii~sp~H~~~l~~m~~~~ 126 (347)
T TIGR00209 50 PDCYLCPGNKRVTGD-L--NPDYTGTYVFTNDFAALMSDTPDAPESHDPLMRCQSARGTSRVICFSPDHSKTLPELSVAA 126 (347)
T ss_pred CCCCCCCCCCCCCCC-c--CCCCceEEEEeCCCcccccCCCCCCcCCCcccccCCCCeeEEEEEeCCCccCChhHCCHHH
Confidence 469999988543222 2 222 3455555666321 2 2 3444668999999999887
Q ss_pred HHHHHH-HHHHHHHHHHhcCC-ceEEEeec---cCC-CCeeEEEEEecC
Q 007415 445 EKELGR-FQNSLMMYYKNQGK-EAVFFEWL---SKR-GTHANLQAVPIP 487 (604)
Q Consensus 445 ~~Ei~~-~~~~L~~~~~~~g~-~~v~~E~~---~~~-~~H~HihvvPvp 487 (604)
+..+.. +++.+..+. + +. -|.+||+. .+. ..|-|-|++-.|
T Consensus 127 i~~v~~~~~~r~~~l~-~-~i~yv~iF~N~G~~~GaSl~HPH~Qi~a~p 173 (347)
T TIGR00209 127 LTEIVKTWQEQTAELG-K-TYPWVQIFENKGAAMGCSNPHPHGQIWANS 173 (347)
T ss_pred HHHHHHHHHHHHHHHH-h-CCcEEEEEeecCcccCcCCCCCceeeeeCC
Confidence 777664 455555544 2 33 35667722 222 479999988544
No 156
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Probab=76.26 E-value=17 Score=39.10 Aligned_cols=61 Identities=16% Similarity=0.036 Sum_probs=38.1
Q ss_pred EEEEeccccCCCCCCCHHHHHHHHH-HHHHHHHHHHhcCCceEEEeec---cCC-CCeeEEEEEecC
Q 007415 426 VLVIPVEHVPNTISTSPECEKELGR-FQNSLMMYYKNQGKEAVFFEWL---SKR-GTHANLQAVPIP 487 (604)
Q Consensus 426 ~LIiP~~H~~s~~~l~~~~~~Ei~~-~~~~L~~~~~~~g~~~v~~E~~---~~~-~~H~HihvvPvp 487 (604)
++|---+|..++.+++.+.+..+.. +++.+..+.+... =+.+||+. .+. ..|-|.|++-.|
T Consensus 108 Viv~sp~H~~~l~~~~~~~i~~v~~~~~~r~~~l~~~i~-yv~iF~N~G~~~GaSl~HPH~Qi~a~p 173 (346)
T PRK11720 108 VICFSPDHSKTLPELSVAALREVVDTWQEQTAELGKTYP-WVQVFENKGAAMGCSNPHPHGQIWANS 173 (346)
T ss_pred EEEECCCcCCChhHCCHHHHHHHHHHHHHHHHHHHhCCc-EEEEEeecCcccCcCCCCCceeeeeCC
Confidence 4555778999999999887776664 4555554443322 24556622 222 369999987544
No 157
>KOG0562 consensus Predicted hydrolase (HIT family) [General function prediction only]
Probab=76.23 E-value=2.5 Score=39.99 Aligned_cols=75 Identities=16% Similarity=0.155 Sum_probs=40.6
Q ss_pred CEEEEEecCCCCCCCeEEEEec-cccCCCCCC---CHHHHHHHHHHHHHHHHHHHhcCCceEEEe--eccCC-CCeeEEE
Q 007415 410 EYYYCALPKGPLVEDHVLVIPV-EHVPNTIST---SPECEKELGRFQNSLMMYYKNQGKEAVFFE--WLSKR-GTHANLQ 482 (604)
Q Consensus 410 ~~~yl~l~kgpl~~GH~LIiP~-~H~~s~~~l---~~~~~~Ei~~~~~~L~~~~~~~g~~~v~~E--~~~~~-~~H~Hih 482 (604)
+.+.++-+++|=+.-|.||.|. .=+.++... .-+...||...-.++...+...+. ..+|. +-+.. ..|+|+|
T Consensus 23 d~vvvIrD~fPKa~~H~LvLpr~s~i~~l~~~~qe~l~ll~~~h~~~~~~v~~~~~~~~-~~~f~vG~HavPSM~~LHLH 101 (184)
T KOG0562|consen 23 DDVVVIRDKFPKARMHLLVLPRRSSIDSLFSVVQEHLSLLKEDHAVGPCWVDQLTNEAL-CNYFRVGFHAVPSMNNLHLH 101 (184)
T ss_pred ccEEEEcccCccceeEEEEecccchhHHHHHHHHHHhhHhHHHhhcCchHHHHhcchhh-hhheeeeeccCcchhheeEE
Confidence 4777788899999999999995 222222222 112344444433344444443211 11222 11222 3599999
Q ss_pred EEe
Q 007415 483 AVP 485 (604)
Q Consensus 483 vvP 485 (604)
||-
T Consensus 102 VIS 104 (184)
T KOG0562|consen 102 VIS 104 (184)
T ss_pred Eee
Confidence 996
No 158
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=74.60 E-value=20 Score=39.79 Aligned_cols=207 Identities=16% Similarity=0.203 Sum_probs=105.8
Q ss_pred CEEEEEcCCCCCHHHHHH-HHHHHHhh-cCCC------cEEEEecCCCC---CC------------hhhHHHHHHHhccc
Q 007415 4 PRILLCGDVLGRLNQLFK-RVQSVNKS-AGPF------DAVLCVGQFFP---DS------------SELLDEFMNYVEGR 60 (604)
Q Consensus 4 ~KILv~GDvhG~~~~l~~-kv~~l~~k-~Gpf------D~vi~~GDff~---~~------------~~~~~~~~~~l~g~ 60 (604)
.++++++|+|=--..+.+ ...+..+. +|+. ..++|+||... .. .+.-+++.+||.-
T Consensus 226 v~v~~isDih~GSk~F~~~~f~~fi~wl~g~~~~a~~vkyliiagd~VDGigiYpgq~~eL~i~di~~qy~~~A~~L~~- 304 (481)
T COG1311 226 VYVALISDIHRGSKEFLEDEFEKFIDWLNGPGDLASRVKYLIIAGDVVDGIGIYPGQEEELVIADIYEQYEELAEFLDQ- 304 (481)
T ss_pred eEEEEEeeeecccHHHHHHHHHHHHHHhcCCcccccceEEEEEecccccccccccCcccccccccchHHHHHHHHHHhh-
Confidence 578999999973222222 12222221 5665 89999999743 10 0122345667642
Q ss_pred CCCCCcEEEEcCCCCChHHHHHHHhccccccCcc--cCCceecCCEEEcCCCCeEEEcCcEEEEEecccCCCC--CCC-C
Q 007415 61 SEIPIPTYFIGDYGVGAAKVLLAASKNSANQGFK--MDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEG--QQF-G 135 (604)
Q Consensus 61 ~~~p~ptyfv~GNh~~~~~~l~~l~~~~~~~~~~--~~g~ei~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~--~~~-~ 135 (604)
.-..+.++.+||||+..... ++.. .+. ...-....|+.++..--.+.++|..+-...|..-.+- ..+ .
T Consensus 305 vp~~I~v~i~PGnhDa~r~a---~PQp----~~~~~~kslf~~~n~~~v~NP~~~~l~G~~vL~~hG~sidDii~~vP~~ 377 (481)
T COG1311 305 VPEHIKVFIMPGNHDAVRQA---LPQP----HFPELIKSLFSLNNLLFVSNPALVSLHGVDVLIYHGRSIDDIIKLVPGA 377 (481)
T ss_pred CCCCceEEEecCCCCccccc---cCCC----CcchhhcccccccceEecCCCcEEEECCEEEEEecCCCHHHHHhhCCCC
Confidence 22346789999999853211 1110 000 0011123567777766777899999998888742100 000 0
Q ss_pred CCC--HHHHHHHHHhhcCCCCccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHHHHHhCCCEEEEccCCCcccc
Q 007415 136 TYS--QDDVDALRALAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAR 213 (604)
Q Consensus 136 ~~t--e~d~~~L~~l~~~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPrYhf~Gh~~~fyEr 213 (604)
.|. ..-++.|.+. =|-.|.-= +.. | ..-. .-+-|+-.--|-+..+||.|.|.-.
T Consensus 378 ~~~~~~~ame~lLk~-----------rHlaPtyg---g~~---p------~aP~-~kD~lVIeevPDv~~~Ghvh~~g~~ 433 (481)
T COG1311 378 DYDSPLKAMEELLKR-----------RHLAPTYG---GTL---P------IAPE-TKDYLVIEEVPDVFHTGHVHKFGTG 433 (481)
T ss_pred CccchHHHHHHHHHh-----------cccCCCCC---Ccc---c------cccC-CcCceeeccCCcEEEEcccccccee
Confidence 010 1112222221 12222210 010 0 0011 1345666678999999999887432
Q ss_pred cccccCCCcceeEEEEcCCCCCc-ccceeEEEeccCCC
Q 007415 214 EPYSNVDAVHVTRFLGLAPVGNK-EKQKFIHALSPTPA 250 (604)
Q Consensus 214 ~Py~~~~~~~~TRFI~L~~~gn~-~K~Kw~yAf~i~p~ 250 (604)
. -..-+.||++.+-.- +.|| +.-++.+|.
T Consensus 434 ~-------y~gv~~vns~T~q~qTefqk-~vni~p~~~ 463 (481)
T COG1311 434 V-------YEGVNLVNSGTWQEQTEFQK-MVNINPTPG 463 (481)
T ss_pred E-------EeccceEEeeeecchhccce-EEEecCccc
Confidence 2 223688999998763 3444 555554444
No 159
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=73.76 E-value=1.1e+02 Score=31.03 Aligned_cols=105 Identities=14% Similarity=0.246 Sum_probs=58.7
Q ss_pred EEEEEcCCC--C---------CHHHHHHHHHHHHhhcCCCcEEEEecCCCCC---------C-h--hhHHHHHHHhcccC
Q 007415 5 RILLCGDVL--G---------RLNQLFKRVQSVNKSAGPFDAVLCVGQFFPD---------S-S--ELLDEFMNYVEGRS 61 (604)
Q Consensus 5 KILv~GDvh--G---------~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~---------~-~--~~~~~~~~~l~g~~ 61 (604)
+|+++||+- . .++.+|+.+..+-++. |++ ++++-.+ . . ....+..+.| .
T Consensus 1 ti~~~GDi~~~~~~~~~~~~~~~~~~~~~v~~~l~~a---D~~--~~NlE~~v~~~~~~~~~~~~f~~~~~~~~~L---~ 72 (250)
T PF09587_consen 1 TIAFVGDIMLGRGVYQRAEKGGFDYIFEDVKPLLQSA---DLV--VANLETPVTDSGQPASGYPHFNAPPEILDAL---K 72 (250)
T ss_pred CEEEEeccccCcchhhhcccCChHHHHHHHHHHHhhC---CEE--EEEeeecCcCCCCcCCCcceecCCHHHHHHH---H
Confidence 477888863 2 4567888887766543 654 4444221 0 0 1112233444 4
Q ss_pred CCCCcEEEEcCCCCChH---HHHHHHhccccccCcccCCceecCCEEEcC---------CCCeEEEcCcEEEEEecccCC
Q 007415 62 EIPIPTYFIGDYGVGAA---KVLLAASKNSANQGFKMDGFKVTDNLFWLK---------GSGNFTLHGLSVAYLSGRQSS 129 (604)
Q Consensus 62 ~~p~ptyfv~GNh~~~~---~~l~~l~~~~~~~~~~~~g~ei~~Nl~~Lg---------~~gv~~~~GlrIa~lgG~~~~ 129 (604)
.+++-++-+..||..+. .+.+.+..-. ..++.+.| +--+++++|.+||.+|-....
T Consensus 73 ~~G~d~vslANNH~~D~G~~gl~~Tl~~L~------------~~gi~~~Gag~~~~~a~~p~i~~~~g~kia~l~~t~~~ 140 (250)
T PF09587_consen 73 DAGFDVVSLANNHIFDYGEEGLLDTLEALD------------KAGIPYVGAGRNLEEARRPAIIEVNGVKIAFLGYTDGE 140 (250)
T ss_pred HcCCCEEEecCCCCccccHHHHHHHHHHHH------------HCCCcEeECcCChHHhcCeEEEEECCEEEEEEEEEcCC
Confidence 56777888888997652 2333332100 12444555 123457899999999988654
No 160
>KOG2720 consensus Predicted hydrolase (HIT family) [General function prediction only]
Probab=72.62 E-value=2.6 Score=44.26 Aligned_cols=71 Identities=17% Similarity=0.185 Sum_probs=37.9
Q ss_pred EEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHhcC--CceEEEeeccCC-CCeeEEEEEecCcc
Q 007415 413 YCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQG--KEAVFFEWLSKR-GTHANLQAVPIPTS 489 (604)
Q Consensus 413 yl~l~kgpl~~GH~LIiP~~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~~g--~~~v~~E~~~~~-~~H~HihvvPvp~~ 489 (604)
.|++++.|+..||+||||-- .++.+.. -.....+-++.-|....+ +.+.++--.+.. +-|+|+|..=.|.+
T Consensus 169 vvaIN~sPie~~H~LiiP~V-----~kc~pQr-it~~al~lav~~m~~~dd~~frlgyNSlga~AsVNHLHfha~y~p~d 242 (431)
T KOG2720|consen 169 VVAINVSPIEYGHVLIIPRV-----LKCLPQR-ITHKALLLAVTMMAEADDPYFRLGYNSLGAFASVNHLHFHAYYLPMD 242 (431)
T ss_pred eEEEecCccccCcEEEecch-----hccCcce-eeHHHHHHHHHHHHhcCCchhheecccchhhhhhhhhhhhhhhcccc
Confidence 34677789999999999963 3322221 112233345555554432 233333211222 45999998644443
No 161
>KOG0375 consensus Serine-threonine phosphatase 2B, catalytic subunit [General function prediction only]
Probab=70.93 E-value=5.5 Score=42.23 Aligned_cols=65 Identities=20% Similarity=0.351 Sum_probs=37.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhcC-CC-cEEEEecCCCCCChh---hHHHHHHHhcccCCCCCcEEEEcCCCCC
Q 007415 5 RILLCGDVLGRLNQLFKRVQSVNKSAG-PF-DAVLCVGQFFPDSSE---LLDEFMNYVEGRSEIPIPTYFIGDYGVG 76 (604)
Q Consensus 5 KILv~GDvhG~~~~l~~kv~~l~~k~G-pf-D~vi~~GDff~~~~~---~~~~~~~~l~g~~~~p~ptyfv~GNh~~ 76 (604)
-|-||||+||.|=.|.+..+ + .| |. ---+.+||...-++- ..--++.+. +..|-..+.+-|||+.
T Consensus 89 PiTVCGDIHGQf~DLmKLFE-V---GG~PA~t~YLFLGDYVDRGyFSiECvlYLwsLK---i~yp~tl~lLRGNHEC 158 (517)
T KOG0375|consen 89 PITVCGDIHGQFFDLMKLFE-V---GGSPANTRYLFLGDYVDRGYFSIECVLYLWSLK---INYPKTLFLLRGNHEC 158 (517)
T ss_pred CeeEecccchHHHHHHHHHH-c---cCCcccceeEeeccccccceeeeehHHHHHHHh---cCCCCeEEEecCCcch
Confidence 37899999998766664332 2 23 21 234678997543321 111223321 3345556778899984
No 162
>PF05011 DBR1: Lariat debranching enzyme, C-terminal domain; InterPro: IPR007708 This presumed domain is found at the C terminus of lariat debranching enzyme. This domain is always found in association with a metallo-phosphoesterase domain IPR004843 from INTERPRO. RNA lariat debranching enzyme is capable of digesting a variety of branched nucleic acid substrates and multicopy single-stranded DNAs. The enzyme degrades intron lariat structures during splicing. ; GO: 0016788 hydrolase activity, acting on ester bonds, 0006397 mRNA processing
Probab=69.78 E-value=4.4 Score=37.91 Aligned_cols=30 Identities=20% Similarity=0.442 Sum_probs=25.9
Q ss_pred CcceeEEEEcCCCCCcccceeEEEeccCCCCC
Q 007415 221 AVHVTRFLGLAPVGNKEKQKFIHALSPTPAAT 252 (604)
Q Consensus 221 ~~~~TRFI~L~~~gn~~K~Kw~yAf~i~p~~~ 252 (604)
....|||++|++++. +++||.-+.|.+...
T Consensus 6 ~~~~TkFLALDKClP--~R~FLqviei~~~~~ 35 (145)
T PF05011_consen 6 TNKTTKFLALDKCLP--RRDFLQVIEIPPDSS 35 (145)
T ss_pred CCCccEEEeccccCC--CCcceEEEEecCCCC
Confidence 467899999999998 788999999987654
No 163
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=65.38 E-value=1.3 Score=47.80 Aligned_cols=69 Identities=16% Similarity=0.247 Sum_probs=43.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhcC---CCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCCh
Q 007415 5 RILLCGDVLGRLNQLFKRVQSVNKSAG---PFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGA 77 (604)
Q Consensus 5 KILv~GDvhG~~~~l~~kv~~l~~k~G---pfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~ 77 (604)
-|-||||.||.++.|+-- --|+| +=.--+.-|||..-+....+-+.-++.-..-.|-.++.--|||+++
T Consensus 166 qVTiCGDLHGklDDL~~I----~yKNGlPS~~npYvFNGDFVDRGk~siEvLmiL~a~~lv~P~~~~LNRGNHED~ 237 (631)
T KOG0377|consen 166 QVTICGDLHGKLDDLLVI----LYKNGLPSSSNPYVFNGDFVDRGKRSIEVLMILFALYLVYPNAVHLNRGNHEDH 237 (631)
T ss_pred ceEEeccccccccceEEE----EecCCCCCCCCCeeecCchhhccccchhhHHHHHHHHhcCchhhhccCCchHHH
Confidence 588999999999977532 23565 1223467899966543333333332222244667788889999986
No 164
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=61.05 E-value=2.7 Score=27.45 Aligned_cols=23 Identities=43% Similarity=1.125 Sum_probs=16.7
Q ss_pred cceeeeccCCCCCCCcccccCCc
Q 007415 315 MCFKFIYSGSCPRGEKCNFRHDT 337 (604)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~ 337 (604)
+|..|...|.|+.|+.|+|.|.+
T Consensus 5 ~C~~f~~~g~C~~G~~C~f~H~~ 27 (27)
T PF00642_consen 5 LCRFFMRTGTCPFGDKCRFAHGE 27 (27)
T ss_dssp B-HHHHHTS--TTGGGSSSBSSG
T ss_pred cChhhccCCccCCCCCcCccCCC
Confidence 57778888999999999998863
No 165
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=59.12 E-value=33 Score=32.05 Aligned_cols=62 Identities=19% Similarity=0.250 Sum_probs=32.7
Q ss_pred EEcCcEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcCCCCccEEEeCCCCccccccccccccccCcCCCCCCcHHHHHH
Q 007415 114 TLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSEL 193 (604)
Q Consensus 114 ~~~GlrIa~lgG~~~~~~~~~~~~te~d~~~L~~l~~~~~~vDILLTh~wP~gi~~~~~~~~~~~~~~~~~~Gs~~i~~l 193 (604)
+.+|++|...|-... ..+.+.+..+ .++|||+.-.-- . ...+.+...++
T Consensus 102 ~~~g~~i~~~Gd~~~----------~~~~~~~~~~----~~vDvl~~p~~g-------~----------~~~~~~~a~~~ 150 (163)
T PF13483_consen 102 EVGGVTIYHAGDTGF----------PPDDEQLKQL----GKVDVLFLPVGG-------P----------FTMGPEEAAEL 150 (163)
T ss_dssp EETTEEEEE-TT--S-------------HHHHHHH-----S-SEEEEE--T-------T----------TS--HHHHHHH
T ss_pred EeCCCEEEEECCCcc----------CCCHHHHhcc----cCCCEEEecCCC-------C----------cccCHHHHHHH
Confidence 446666666665432 1223344444 479999864322 0 24577788999
Q ss_pred HHHhCCCEEEEcc
Q 007415 194 VAEIKPRYHIAGS 206 (604)
Q Consensus 194 ~~~lkPrYhf~Gh 206 (604)
++.++||+.+--|
T Consensus 151 ~~~l~pk~viP~H 163 (163)
T PF13483_consen 151 AERLKPKLVIPMH 163 (163)
T ss_dssp HHHCT-SEEEEES
T ss_pred HHHcCCCEEEeCC
Confidence 9999999988654
No 166
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=54.14 E-value=33 Score=27.94 Aligned_cols=38 Identities=21% Similarity=0.214 Sum_probs=30.8
Q ss_pred CCEEEEEcCCCC-CHHHHHHHHHHHHhhcCCCcEEEEecCC
Q 007415 3 PPRILLCGDVLG-RLNQLFKRVQSVNKSAGPFDAVLCVGQF 42 (604)
Q Consensus 3 ~~KILv~GDvhG-~~~~l~~kv~~l~~k~GpfD~vi~~GDf 42 (604)
.|||||+|.-.= +...++..+.++.++. .+++|+.|.-
T Consensus 3 g~rVli~GgR~~~D~~~i~~~Ld~~~~~~--~~~~lvhGga 41 (71)
T PF10686_consen 3 GMRVLITGGRDWTDHELIWAALDKVHARH--PDMVLVHGGA 41 (71)
T ss_pred CCEEEEEECCccccHHHHHHHHHHHHHhC--CCEEEEECCC
Confidence 489999998554 6788889999988887 3788999876
No 167
>PRK05471 CDP-diacylglycerol pyrophosphatase; Provisional
Probab=51.94 E-value=49 Score=33.76 Aligned_cols=91 Identities=11% Similarity=0.082 Sum_probs=60.1
Q ss_pred CCCCCCeEEEEeccccCCCCC------CCHHHHHHHHHHHHHHHHHHHhc-CCceEEEe--eccCCC-CeeEEEEEecCc
Q 007415 419 GPLVEDHVLVIPVEHVPNTIS------TSPECEKELGRFQNSLMMYYKNQ-GKEAVFFE--WLSKRG-THANLQAVPIPT 488 (604)
Q Consensus 419 gpl~~GH~LIiP~~H~~s~~~------l~~~~~~Ei~~~~~~L~~~~~~~-g~~~v~~E--~~~~~~-~H~HihvvPvp~ 488 (604)
-+.-+-|.|+||...+.-+.+ -++.-|.+-+..+..+.+.+.+- .-+.+... ...+|+ .|+|||+--+
T Consensus 69 D~~Gp~qyLLiPt~rIsGIEsP~Ll~~~tpnyf~~AW~aR~~v~~~~g~pipd~~lsLaINS~~gRSQnQLHIHIsCl-- 146 (252)
T PRK05471 69 DRNGPLQYLLMPTYRISGIESPLLLEPSTPNYFALAWQARDFMSKKYGKPIPDSAVSLAINSRYGRTQDQLHIHISCL-- 146 (252)
T ss_pred cCCCCcceEEeecccccCccCccccCCCCccHHHHHHHHhHHHHHhhCCCCChhheEEEecCCCCccccceeeehhhC--
Confidence 444566999999999988776 24567888888777777766631 22233333 123344 4788887653
Q ss_pred chHHHHHHHHHHHHHHcCCceeecc
Q 007415 489 SKAAAVQDIFNLAAEKLGFKFLATK 513 (604)
Q Consensus 489 ~~~~~~~~~f~~~~~~~~~~~~~~~ 513 (604)
..++...+...+...+..|..++
T Consensus 147 --rp~v~~~L~~~~~~i~~~W~~lp 169 (252)
T PRK05471 147 --RPDVRAQLDNNLAAISSRWLPLP 169 (252)
T ss_pred --CHHHHHHHHHhcccCCCCceeCC
Confidence 35667777777777888898655
No 168
>TIGR00672 cdh CDP-diacylglycerol pyrophosphatase, bacterial type. Alternate names for this enzyme include CDP-diglyceride hydrolase and CDP-diacylglycerol hydrolase.
Probab=50.84 E-value=50 Score=33.68 Aligned_cols=90 Identities=16% Similarity=0.131 Sum_probs=59.2
Q ss_pred CCCCCeEEEEeccccCCCCC------CCHHHHHHHHHHHHHHHHHHHhc-CCceEEEe--eccCCC-CeeEEEEEecCcc
Q 007415 420 PLVEDHVLVIPVEHVPNTIS------TSPECEKELGRFQNSLMMYYKNQ-GKEAVFFE--WLSKRG-THANLQAVPIPTS 489 (604)
Q Consensus 420 pl~~GH~LIiP~~H~~s~~~------l~~~~~~Ei~~~~~~L~~~~~~~-g~~~v~~E--~~~~~~-~H~HihvvPvp~~ 489 (604)
+--+-|.|+||...+.-+.+ -++.-|.+-++.+..+.+.+.+- .-..+... ...+|+ .|+|||+=-+
T Consensus 69 ~~Gp~qyLLmPt~rIsGIEsP~Ll~~~tpnyf~~AW~aR~~v~~~~g~pipd~~lsLaINS~~gRSQnQLHIHIsCl--- 145 (250)
T TIGR00672 69 LNGPLQYLLMPTYRINGTESPLLLDPSTPNFFWLAWQARDFMSKKYGQPIPDRAVSLAINSRTGRSQNHFHIHISCI--- 145 (250)
T ss_pred CCCCceeEEeeccccCCccChhhcCCCCccHHHHHHHHhHHHHHhcCCCCChhheeEEecCCCCcccccceeeHhhC---
Confidence 34466999999999998875 25567888887777777766531 11223333 123334 4788887553
Q ss_pred hHHHHHHHHHHHHHHcCCceeecc
Q 007415 490 KAAAVQDIFNLAAEKLGFKFLATK 513 (604)
Q Consensus 490 ~~~~~~~~f~~~~~~~~~~~~~~~ 513 (604)
..++.......+...+..|..++
T Consensus 146 -rpdv~~~L~~~~~~i~~~W~~lp 168 (250)
T TIGR00672 146 -RPDVRKQLDNNLKKISSRWLPLP 168 (250)
T ss_pred -CHHHHHHHHHhcccccCCceeCC
Confidence 35667777777777888898665
No 169
>smart00356 ZnF_C3H1 zinc finger.
Probab=49.39 E-value=12 Score=23.71 Aligned_cols=21 Identities=43% Similarity=1.116 Sum_probs=17.2
Q ss_pred cceeeeccCCCCCCCcccccCC
Q 007415 315 MCFKFIYSGSCPRGEKCNFRHD 336 (604)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~ 336 (604)
+|..| ..|.|+.|..|+|.|.
T Consensus 6 ~C~~~-~~g~C~~g~~C~~~H~ 26 (27)
T smart00356 6 LCKFF-KRGYCPYGDRCKFAHP 26 (27)
T ss_pred cCcCc-cCCCCCCCCCcCCCCc
Confidence 57667 7788999999998875
No 170
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=47.53 E-value=40 Score=34.45 Aligned_cols=70 Identities=11% Similarity=0.194 Sum_probs=37.7
Q ss_pred EEEcCCCCC--HHHHHHHHHHHHhhcCCCcEEEEecCC----CCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCCh-HH
Q 007415 7 LLCGDVLGR--LNQLFKRVQSVNKSAGPFDAVLCVGQF----FPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGA-AK 79 (604)
Q Consensus 7 Lv~GDvhG~--~~~l~~kv~~l~~k~GpfD~vi~~GDf----f~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~-~~ 79 (604)
|++||+-|+ .+.+.+.+..|.++. .+|+||+=|.= ++..... ..+++. .++. .++.|||-=. .+
T Consensus 1 LfiGDIvG~~Gr~~v~~~Lp~L~~~~-~~DfVIaNgENaa~G~Git~~~---~~~L~~----~GvD-viT~GNH~wdkke 71 (253)
T PF13277_consen 1 LFIGDIVGKPGRRAVKEHLPELKEEY-GIDFVIANGENAAGGFGITPKI---AEELFK----AGVD-VITMGNHIWDKKE 71 (253)
T ss_dssp EEE-EBBCHHHHHHHHHHHHHHGG---G-SEEEEE-TTTTTTSS--HHH---HHHHHH----HT-S-EEE--TTTTSSTT
T ss_pred CeEEecCCHHHHHHHHHHHHHHHhhc-CCCEEEECCcccCCCCCCCHHH---HHHHHh----cCCC-EEecCcccccCcH
Confidence 789999996 456667788877766 48999999985 3333222 333332 2222 5789999644 33
Q ss_pred HHHHHh
Q 007415 80 VLLAAS 85 (604)
Q Consensus 80 ~l~~l~ 85 (604)
+++.+.
T Consensus 72 i~~~i~ 77 (253)
T PF13277_consen 72 IFDFID 77 (253)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555553
No 171
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=38.36 E-value=93 Score=35.53 Aligned_cols=62 Identities=10% Similarity=0.108 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhhcCCCcEEEEecCCCCCCh------h---hHHHHHHHhcccCCCCCcEEEEcCCCCChH
Q 007415 16 LNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS------E---LLDEFMNYVEGRSEIPIPTYFIGDYGVGAA 78 (604)
Q Consensus 16 ~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~------~---~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~ 78 (604)
...+-+.+..+.+-...+|+|+..||....+. . .+..+.+.+.. ---++|+|...|||+..+
T Consensus 194 ~~lies~L~~ike~~~~iD~I~wTGD~~~H~~w~~t~~~~l~~~~~l~~~~~e-~FpdvpvypalGNhe~~P 264 (577)
T KOG3770|consen 194 KRLIESALDHIKENHKDIDYIIWTGDNVAHDVWAQTEEENLSMLSRLTSLLSE-YFPDVPVYPALGNHEIHP 264 (577)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEeCCCCcccchhhhHHHHHHHHHHHHHHHHH-hCCCCceeeecccCCCCc
Confidence 33444445544333334999999999966421 1 11122222221 113799999999999653
No 172
>PF02611 CDH: CDP-diacylglycerol pyrophosphatase; InterPro: IPR003763 The CDP-diacylglycerol pyrophosphatases 3.6.1.26 from EC play a role in the regulation of phospholipid metabolism by inositol, as well as regulating the cellular levels of phosphatidylinositol [].; GO: 0008715 CDP-diacylglycerol diphosphatase activity, 0008654 phospholipid biosynthetic process, 0016020 membrane; PDB: 2POF_A.
Probab=36.89 E-value=61 Score=32.57 Aligned_cols=92 Identities=9% Similarity=0.092 Sum_probs=45.3
Q ss_pred CCCCCCeEEEEeccccCCCCC------CCHHHHHHHHHHHHHHHHHHHhc-CCceEEEe--eccCCC-CeeEEEEEecCc
Q 007415 419 GPLVEDHVLVIPVEHVPNTIS------TSPECEKELGRFQNSLMMYYKNQ-GKEAVFFE--WLSKRG-THANLQAVPIPT 488 (604)
Q Consensus 419 gpl~~GH~LIiP~~H~~s~~~------l~~~~~~Ei~~~~~~L~~~~~~~-g~~~v~~E--~~~~~~-~H~HihvvPvp~ 488 (604)
.+--+-|.|+||..-+.-+.+ -++.-|..-++-+..+.+.+.+- .-..+... ...+|+ .|+|||+--+
T Consensus 40 d~~G~~qyLL~Pt~rIsGIEsP~Ll~~~~pNyf~~AW~aR~~v~~~~g~~lpd~~lsLaINS~~gRsQdQLHIHisCl-- 117 (222)
T PF02611_consen 40 DRNGPLQYLLMPTDRISGIESPALLEPRTPNYFADAWQARGFVSQKLGKPLPDDDLSLAINSQYGRSQDQLHIHISCL-- 117 (222)
T ss_dssp -SSSSS-EEEEESS---STT-GGGGSTTS--HHHHHHHTTHHHHHHHTS---GGGEEEEEB-GGG-S--S--EEEEEB--
T ss_pred CCCCCccEEEeeccccCCccChhhcCCCCccHHHHHHHhhHHHHHhcCCCCCccceEEEecCccCccccceEeEhhhc--
Confidence 344467999999999988776 25667877777666666665531 11223333 233444 4777777654
Q ss_pred chHHHHHHHHHHHHHHcCCceeeccC
Q 007415 489 SKAAAVQDIFNLAAEKLGFKFLATKS 514 (604)
Q Consensus 489 ~~~~~~~~~f~~~~~~~~~~~~~~~~ 514 (604)
-.++...+...+...+..|...+.
T Consensus 118 --rp~v~~~L~~~~~~i~~~W~~lp~ 141 (222)
T PF02611_consen 118 --RPDVRAQLDAHAPQIGSQWQPLPL 141 (222)
T ss_dssp ---HHHHHHHHCCCCC--SS-EE-TT
T ss_pred --CHHHHHHHHhhcCCCCCCCeECCc
Confidence 345666666666666777886554
No 173
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=32.68 E-value=1.5e+02 Score=31.14 Aligned_cols=42 Identities=12% Similarity=0.074 Sum_probs=31.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhhc-C------CCcEEEEecCCCCC
Q 007415 4 PRILLCGDVLGRLNQLFKRVQSVNKSA-G------PFDAVLCVGQFFPD 45 (604)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~-G------pfD~vi~~GDff~~ 45 (604)
.||.++||+|=+-..++++++++-.+- . ..-++|.+|+|...
T Consensus 28 ~~~VilSDV~LD~p~tl~~L~kvf~~y~~~~~~~~~P~~fVL~GnF~S~ 76 (291)
T PTZ00235 28 HNWIIMHDVYLDSPYTFEVLDKMLSLYVNTYPENELPVGFIFMGDFISL 76 (291)
T ss_pred eEEEEEEeeccCCHHHHHHHHHHHHHhhccCcccCCCeEEEEecCccCC
Confidence 689999999988777777777765543 1 25688999999543
No 174
>KOG3969 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.78 E-value=81 Score=32.60 Aligned_cols=88 Identities=20% Similarity=0.204 Sum_probs=53.5
Q ss_pred CCcceEEEECCE---EEEEec--C-CC--CCCCeEEEEec-cccCCCCCCCHHHHHHHHHHHHHHHHHHHh-cCCce---
Q 007415 400 VESHLIVSVGEY---YYCALP--K-GP--LVEDHVLVIPV-EHVPNTISTSPECEKELGRFQNSLMMYYKN-QGKEA--- 466 (604)
Q Consensus 400 ~~~~lIvs~g~~---~yl~l~--k-gp--l~~GH~LIiP~-~H~~s~~~l~~~~~~Ei~~~~~~L~~~~~~-~g~~~--- 466 (604)
.+...||+...+ -|+.+| | .+ +..=|+|.|=. +-+.|+.+|..+-+.=+.+..+..+..+.. +|.+.
T Consensus 157 aE~driV~ed~d~~nGFillPDlKWdgqtld~LyllaIvhr~dikSiRDL~~~h~~lL~n~r~k~~~~i~~~y~v~~dql 236 (310)
T KOG3969|consen 157 AEDDRIVYEDPDPENGFILLPDLKWDGQTLDSLYLLAIVHRRDIKSIRDLRPSHLQLLRNIRNKSREAIPQRYGVDPDQL 236 (310)
T ss_pred ccccceEEecCCCcCCeEEccccccCcccccceeEEEEEecCCcchhhhCCHHHHHHHHHHHHHHHHHHHHHhCCCchhE
Confidence 345556655433 467777 3 34 33456554433 335668889988888888888777776553 34321
Q ss_pred -EEEeeccCCC-CeeEEEEEecCcc
Q 007415 467 -VFFEWLSKRG-THANLQAVPIPTS 489 (604)
Q Consensus 467 -v~~E~~~~~~-~H~HihvvPvp~~ 489 (604)
+||- =+.+ .|+|+|++++-.+
T Consensus 237 rmf~H--YqPSyYHlHVHi~nik~~ 259 (310)
T KOG3969|consen 237 RMFFH--YQPSYYHLHVHIVNIKHD 259 (310)
T ss_pred EEEEE--ecCceEEEEEEEEeccCC
Confidence 2222 1223 5999999998655
No 175
>PF12239 DUF3605: Protein of unknown function (DUF3605); InterPro: IPR022036 This family of proteins is found in eukaryotes and viruses. Proteins in this family are typically between 161 and 256 amino acids in length.
Probab=30.89 E-value=1.3e+02 Score=28.68 Aligned_cols=65 Identities=20% Similarity=0.363 Sum_probs=41.6
Q ss_pred ecCCCC--CCC--eEEE---EeccccCCCCCCCHHHHHHHHHHHHHHH-HHHHhcCCceEEEe-eccCCC----CeeEE
Q 007415 416 LPKGPL--VED--HVLV---IPVEHVPNTISTSPECEKELGRFQNSLM-MYYKNQGKEAVFFE-WLSKRG----THANL 481 (604)
Q Consensus 416 l~kgpl--~~G--H~LI---iP~~H~~s~~~l~~~~~~Ei~~~~~~L~-~~~~~~g~~~v~~E-~~~~~~----~H~Hi 481 (604)
.+..|+ .+| |++| +|+.+-+...+++++..++|.+|.+..- .-+ ..+-+++.|. ..+.++ .|+|+
T Consensus 78 ~NDwPY~~e~~I~HlVVWsK~~L~~d~~~gd~t~~~r~~I~~fv~~~f~~~~-~~~~~v~WF~N~~~LqSV~~v~H~HV 155 (158)
T PF12239_consen 78 RNDWPYGFEPGIVHLVVWSKFPLPVDPETGDLTPESRELIEDFVQRTFVDRL-IPEDNVLWFKNWPSLQSVRAVEHIHV 155 (158)
T ss_pred ecCCCcCCCCCceEEEEEecCccccccccccccHHHHHHHHHHHHHHHHhhc-CCCccEEEEeCchhcCCcCcceEEEE
Confidence 445664 455 8877 5777777788999999999999865332 222 2234677776 445554 36554
No 176
>KOG3818 consensus DNA polymerase epsilon, subunit B [Replication, recombination and repair]
Probab=30.06 E-value=1.9e+02 Score=31.99 Aligned_cols=42 Identities=14% Similarity=0.303 Sum_probs=35.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhhc--CCCcEEEEecCCCCC
Q 007415 4 PRILLCGDVLGRLNQLFKRVQSVNKSA--GPFDAVLCVGQFFPD 45 (604)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~--GpfD~vi~~GDff~~ 45 (604)
.++.+++|++=+-..++++++++-.+- -|.-++|.||.|-+.
T Consensus 283 ~~fVfLSdV~LD~~~vm~aL~kifqgy~~~pP~~iIlcG~FtS~ 326 (525)
T KOG3818|consen 283 TSFVFLSDVFLDDKKVMEALRKIFQGYKDAPPTAIILCGSFTSS 326 (525)
T ss_pred ceEEEEehhccccHHHHHHHHHHHhhccCCCCeEEEEecccccc
Confidence 468888999999999999999987763 378899999999654
No 177
>KOG4138 consensus Unchracterized conserved protein (estrogen up-regulated protein E2IG2 in human) [General function prediction only]
Probab=29.92 E-value=17 Score=30.66 Aligned_cols=21 Identities=33% Similarity=0.865 Sum_probs=15.6
Q ss_pred ccccccccCCChHHHHHHHHHHHhcCcc
Q 007415 572 DKADWRNCMLGKEEETKMVEDFKKRFEA 599 (604)
Q Consensus 572 ~r~~Wr~c~~~~~ee~~~~~~F~~~f~~ 599 (604)
+--|||+|+ ..+++||+-|++
T Consensus 56 ~t~DWRqC~-------~qm~~FrkCwek 76 (96)
T KOG4138|consen 56 QTQDWRQCQ-------PQMQAFRKCWEK 76 (96)
T ss_pred hhccHHHHH-------HHHHHHHHHHHH
Confidence 346899996 347789988865
No 178
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=25.15 E-value=91 Score=31.28 Aligned_cols=34 Identities=9% Similarity=0.021 Sum_probs=26.1
Q ss_pred HhCCCEEEEccCCCcccccccccCCCcceeEEEEcCCCCCc
Q 007415 196 EIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNK 236 (604)
Q Consensus 196 ~lkPrYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~~~gn~ 236 (604)
.-.|.+.|+||.|.++.+. .+.+++||+|.+-++
T Consensus 189 ~~~p~vii~Gh~h~~~~~~-------~~~~~~vn~Gsf~~~ 222 (243)
T cd07386 189 DEVPDILHTGHVHVYGVGV-------YRGVLLVNSGTWQSQ 222 (243)
T ss_pred cCCCCEEEECCCCchHhEE-------ECCEEEEECCCCcCC
Confidence 4589999999988765542 235999999999764
No 179
>COG1911 RPL30 Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]
Probab=23.63 E-value=1.1e+02 Score=26.56 Aligned_cols=41 Identities=20% Similarity=0.255 Sum_probs=29.1
Q ss_pred hcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCC
Q 007415 29 SAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGV 75 (604)
Q Consensus 29 k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~ 75 (604)
++|..-+||+++++-.+. .+-.+|++-.. .+|+|+..||..
T Consensus 32 k~gkaKliiiAsN~P~~~----k~~ieyYAkLs--~ipV~~y~Gt~~ 72 (100)
T COG1911 32 KLGKAKLIIIASNCPKEL----KEDIEYYAKLS--DIPVYVYEGTSV 72 (100)
T ss_pred HcCCCcEEEEecCCCHHH----HHHHHHHHHHc--CCcEEEecCCce
Confidence 567789999999997652 22345554323 689999999865
No 180
>PF01076 Mob_Pre: Plasmid recombination enzyme; InterPro: IPR001668 With some plasmids, recombination can occur in a site specific manner that is independent of RecA. In such cases, the recombination event requires another protein called Pre. Pre is a plasmid recombination enzyme. This protein is also known as Mob (conjugative mobilisation) [].; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005727 extrachromosomal circular DNA
Probab=23.41 E-value=2.6e+02 Score=27.23 Aligned_cols=53 Identities=17% Similarity=0.324 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHH-hcCC-ceEEEe-eccCCCCeeEEEEEecCcchHHHHHHHH
Q 007415 446 KELGRFQNSLMMYYK-NQGK-EAVFFE-WLSKRGTHANLQAVPIPTSKAAAVQDIF 498 (604)
Q Consensus 446 ~Ei~~~~~~L~~~~~-~~g~-~~v~~E-~~~~~~~H~HihvvPvp~~~~~~~~~~f 498 (604)
+++.+|.+...+.|. ..|. +++..- -.--..+|+|+-+||+-.+.......+|
T Consensus 98 e~~~~~~~~~~~~~~~r~g~~ni~~a~vH~DE~tPH~H~~~vP~~~~~rl~~k~~~ 153 (196)
T PF01076_consen 98 EQQKRWFEDSLEWLQERYGNENIVSAVVHLDETTPHMHFDVVPIDEDGRLSAKRLF 153 (196)
T ss_pred HHHHHHHHHHHHHHHHHCCchhEEEEEEECCCCCcceEEEEeecccccccchhhhh
Confidence 445566555555554 4563 444333 1222379999999999766322333333
No 181
>TIGR00854 pts-sorbose PTS system, mannose/fructose/sorbose family, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families.It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIB components of this family of PTS transporters.
Probab=21.80 E-value=4.4e+02 Score=24.69 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=16.6
Q ss_pred CCCHHHHHHHHHhhcCCCCccEEE
Q 007415 136 TYSQDDVDALRALAEEPGIVDLFL 159 (604)
Q Consensus 136 ~~te~d~~~L~~l~~~~~~vDILL 159 (604)
..+++|+++|+.+.. .+++|-+
T Consensus 120 ~l~~~e~~~l~~l~~--~Gv~v~~ 141 (151)
T TIGR00854 120 SVDDQDITAFRFLKQ--RGVKLFL 141 (151)
T ss_pred eeCHHHHHHHHHHHH--cCCEEEE
Confidence 568999999998853 4677655
No 182
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=21.80 E-value=1.4e+02 Score=28.86 Aligned_cols=79 Identities=15% Similarity=0.129 Sum_probs=43.1
Q ss_pred CCcEEEEecCCCCC----Ch---hhHHH-HHHHhcccCCCCCcEEEEcCCCCChHHHHHHHhccccccCcccCCceecCC
Q 007415 32 PFDAVLCVGQFFPD----SS---ELLDE-FMNYVEGRSEIPIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDN 103 (604)
Q Consensus 32 pfD~vi~~GDff~~----~~---~~~~~-~~~~l~g~~~~p~ptyfv~GNh~~~~~~l~~l~~~~~~~~~~~~g~ei~~N 103 (604)
..|.||++||+|.. .. ..... +..++ .......++|+|.||||.. +...... ...
T Consensus 30 ~~~~lvl~GDi~d~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~v~~v~GNHD~~--~~~~~~~--------------~~~ 92 (217)
T cd07398 30 EADALYLLGDIFDLWFGDDEVVPPAAHEVLAALL-RLADRGTRVYYVPGNHDFL--LGDFFAE--------------ELG 92 (217)
T ss_pred CCCEEEEeccEEEEEecCCCCCChHHHHHHHHHH-HHHHCCCeEEEECCCchHH--HHhHHHH--------------HcC
Confidence 57999999999742 10 00111 12222 1234568999999999843 1111110 012
Q ss_pred EEEcCCCC-eEEEcCcEEEEEeccc
Q 007415 104 LFWLKGSG-NFTLHGLSVAYLSGRQ 127 (604)
Q Consensus 104 l~~Lg~~g-v~~~~GlrIa~lgG~~ 127 (604)
+..+.... .++++|.+|...=|-.
T Consensus 93 ~~~~~~~~~~~~~~g~~~~~~HG~~ 117 (217)
T cd07398 93 LILLPDPLVHLELDGKRILLEHGDQ 117 (217)
T ss_pred CEEeccceEEEeeCCeEEEEECCCc
Confidence 23333333 5577888888776653
No 183
>PRK11425 PTS system N-acetylgalactosamine-specific transporter subunit IIB; Provisional
Probab=21.69 E-value=3.9e+02 Score=25.25 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=16.6
Q ss_pred CCCHHHHHHHHHhhcCCCCccEEE
Q 007415 136 TYSQDDVDALRALAEEPGIVDLFL 159 (604)
Q Consensus 136 ~~te~d~~~L~~l~~~~~~vDILL 159 (604)
..+++|++.|+.+.. .+++|.+
T Consensus 121 ~l~~~e~~~lk~l~~--~Gv~v~~ 142 (157)
T PRK11425 121 SVDAGDIAAFNDLKA--AGVECFV 142 (157)
T ss_pred eeCHHHHHHHHHHHH--cCCEEEE
Confidence 568999999999863 4677655
No 184
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.95 E-value=1.4e+02 Score=32.68 Aligned_cols=69 Identities=14% Similarity=0.220 Sum_probs=43.1
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCCcEEEEcCCCCChHHHH
Q 007415 6 ILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVL 81 (604)
Q Consensus 6 ILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~~l 81 (604)
|+++|=--+-=.....|+..+.+|.| +...++|||-|-... .+++... ..++.+|.|-- +..-+|..+.
T Consensus 104 imfVGLqG~GKTTtc~KlA~y~kkkG-~K~~LvcaDTFRagA--fDQLkqn---A~k~~iP~ygs-yte~dpv~ia 172 (483)
T KOG0780|consen 104 IMFVGLQGSGKTTTCTKLAYYYKKKG-YKVALVCADTFRAGA--FDQLKQN---ATKARVPFYGS-YTEADPVKIA 172 (483)
T ss_pred EEEEeccCCCcceeHHHHHHHHHhcC-CceeEEeecccccch--HHHHHHH---hHhhCCeeEec-ccccchHHHH
Confidence 56666544444455667777777877 899999999987642 2333333 35677887763 3334454444
No 185
>KOG3243 consensus 6,7-dimethyl-8-ribityllumazine synthase [Coenzyme transport and metabolism]
Probab=20.34 E-value=1.7e+02 Score=26.86 Aligned_cols=54 Identities=20% Similarity=0.249 Sum_probs=34.5
Q ss_pred hcCCCcEEEEecCCCCCCh-----hhHHHHHHHhcccCCCCCcEEEEcCCCCChHHHHH
Q 007415 29 SAGPFDAVLCVGQFFPDSS-----ELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLL 82 (604)
Q Consensus 29 k~GpfD~vi~~GDff~~~~-----~~~~~~~~~l~g~~~~p~ptyfv~GNh~~~~~~l~ 82 (604)
+.|.||+|||.|-+..... -.+.....+++-..+..+|++|-.=.+++...-+.
T Consensus 73 ~r~~~daVi~IGvlIkGsTmHfeyis~s~~hglm~~~~~sgvPvIfGlLTc~~eeQAL~ 131 (158)
T KOG3243|consen 73 KRGKFDAVICIGVLIKGSTMHFEYISNSAAHGLMSASINSGVPVIFGLLTCEDEEQALN 131 (158)
T ss_pred hccCceEEEEEEEEEecCchhHHHHHHHHHHHHhhhcccCCCCEEEEEeeeccHHHHHH
Confidence 3458999999999843211 11122344555567789999997777776554444
Done!