Query 007417
Match_columns 604
No_of_seqs 472 out of 3842
Neff 8.9
Searched_HMMs 46136
Date Thu Mar 28 23:18:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007417.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007417hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0117 Heterogeneous nuclear 100.0 3.8E-47 8.3E-52 374.0 35.9 257 148-415 81-338 (506)
2 TIGR01648 hnRNP-R-Q heterogene 100.0 7.5E-42 1.6E-46 365.5 40.4 248 149-408 57-307 (578)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2.4E-42 5.2E-47 361.7 28.3 255 149-408 2-349 (352)
4 TIGR01628 PABP-1234 polyadenyl 100.0 1.5E-38 3.3E-43 352.4 31.0 253 150-408 88-364 (562)
5 TIGR01628 PABP-1234 polyadenyl 100.0 2.7E-37 5.9E-42 342.4 26.8 245 152-405 2-258 (562)
6 KOG0145 RNA-binding protein EL 100.0 3.5E-37 7.5E-42 283.2 21.1 254 149-407 40-357 (360)
7 KOG0127 Nucleolar protein fibr 100.0 1E-34 2.3E-39 292.2 21.9 252 149-408 4-378 (678)
8 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 6E-34 1.3E-38 307.9 27.1 239 149-407 1-350 (481)
9 TIGR01622 SF-CC1 splicing fact 100.0 8E-34 1.7E-38 307.6 27.0 247 147-405 86-445 (457)
10 KOG0144 RNA-binding protein CU 100.0 9.9E-34 2.2E-38 278.0 19.8 258 149-411 33-507 (510)
11 KOG0127 Nucleolar protein fibr 100.0 1.8E-35 3.8E-40 297.7 7.6 198 146-397 288-564 (678)
12 TIGR01642 U2AF_lg U2 snRNP aux 100.0 5.4E-33 1.2E-37 305.3 26.6 246 146-405 171-499 (509)
13 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 4.7E-33 1E-37 300.9 25.4 238 150-405 96-477 (481)
14 KOG0148 Apoptosis-promoting RN 100.0 4.6E-33 9.9E-38 258.1 20.8 224 148-408 4-238 (321)
15 TIGR01645 half-pint poly-U bin 100.0 1.2E-31 2.5E-36 287.4 29.6 164 144-314 101-281 (612)
16 TIGR01659 sex-lethal sex-letha 100.0 1E-31 2.3E-36 274.6 25.0 169 147-407 104-272 (346)
17 KOG0123 Polyadenylate-binding 100.0 6.1E-30 1.3E-34 262.7 18.3 242 153-406 79-347 (369)
18 KOG0123 Polyadenylate-binding 100.0 1.6E-28 3.6E-33 252.2 20.7 238 151-405 2-243 (369)
19 KOG0110 RNA-binding protein (R 99.9 4.8E-26 1E-30 237.6 17.1 251 146-408 381-693 (725)
20 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 5.4E-26 1.2E-30 238.1 17.0 161 151-318 90-350 (352)
21 KOG0124 Polypyrimidine tract-b 99.9 1.6E-25 3.5E-30 215.4 18.0 255 143-404 106-531 (544)
22 TIGR01645 half-pint poly-U bin 99.9 1.3E-25 2.8E-30 241.0 18.9 171 230-407 107-283 (612)
23 KOG0148 Apoptosis-promoting RN 99.9 4.6E-25 9.9E-30 205.1 13.7 154 150-316 62-237 (321)
24 KOG4212 RNA-binding protein hn 99.9 1.5E-23 3.2E-28 206.4 19.9 145 149-298 43-279 (608)
25 KOG0147 Transcriptional coacti 99.9 1.2E-24 2.6E-29 221.5 12.1 246 147-405 176-525 (549)
26 TIGR01648 hnRNP-R-Q heterogene 99.9 3.6E-23 7.9E-28 222.1 22.6 190 149-353 137-366 (578)
27 KOG0117 Heterogeneous nuclear 99.9 7.9E-22 1.7E-26 195.5 28.1 156 149-319 163-333 (506)
28 KOG0144 RNA-binding protein CU 99.9 7.2E-24 1.6E-28 208.9 13.4 169 229-406 33-202 (510)
29 TIGR01622 SF-CC1 splicing fact 99.9 4.5E-23 9.8E-28 223.6 18.2 172 227-406 86-264 (457)
30 KOG4211 Splicing factor hnRNP- 99.9 1E-21 2.3E-26 197.6 25.8 242 147-404 7-354 (510)
31 KOG0145 RNA-binding protein EL 99.9 9.6E-22 2.1E-26 181.6 12.0 167 227-405 38-204 (360)
32 KOG0131 Splicing factor 3b, su 99.9 5.7E-22 1.2E-26 174.5 9.9 164 149-318 8-178 (203)
33 KOG4205 RNA-binding protein mu 99.9 1.8E-20 4E-25 185.7 20.7 174 149-410 5-178 (311)
34 TIGR01642 U2AF_lg U2 snRNP aux 99.9 7.8E-21 1.7E-25 209.0 18.3 170 226-407 171-374 (509)
35 KOG0131 Splicing factor 3b, su 99.8 6.1E-21 1.3E-25 168.0 12.0 171 227-408 6-177 (203)
36 KOG0109 RNA-binding protein LA 99.8 3.7E-21 8.1E-26 180.9 9.9 160 151-333 3-166 (346)
37 KOG0146 RNA-binding protein ET 99.8 7.1E-21 1.5E-25 176.5 11.1 184 220-408 3-365 (371)
38 KOG0109 RNA-binding protein LA 99.8 1.5E-20 3.4E-25 176.7 11.6 149 231-409 3-151 (346)
39 KOG0110 RNA-binding protein (R 99.8 1E-19 2.2E-24 190.6 12.6 157 153-316 518-692 (725)
40 KOG0124 Polypyrimidine tract-b 99.8 5.1E-19 1.1E-23 170.8 10.2 170 231-407 114-289 (544)
41 PLN03134 glycine-rich RNA-bind 99.7 2.1E-17 4.5E-22 148.3 13.2 84 324-407 30-113 (144)
42 KOG1190 Polypyrimidine tract-b 99.7 4.3E-17 9.3E-22 160.2 15.7 247 148-415 26-380 (492)
43 KOG4211 Splicing factor hnRNP- 99.7 6.4E-16 1.4E-20 156.2 19.3 162 230-404 10-178 (510)
44 KOG0147 Transcriptional coacti 99.7 2.5E-17 5.4E-22 168.5 8.7 174 227-408 176-358 (549)
45 KOG0120 Splicing factor U2AF, 99.7 6E-16 1.3E-20 160.9 14.5 244 147-404 172-488 (500)
46 KOG1456 Heterogeneous nuclear 99.7 3.3E-15 7.2E-20 145.2 18.3 242 144-406 25-361 (494)
47 KOG0105 Alternative splicing f 99.7 2.7E-15 5.8E-20 132.4 14.9 164 228-408 4-188 (241)
48 KOG0146 RNA-binding protein ET 99.7 3.8E-16 8.2E-21 145.3 9.7 164 148-319 17-367 (371)
49 KOG0105 Alternative splicing f 99.6 1.3E-15 2.7E-20 134.5 11.9 140 148-300 4-175 (241)
50 PLN03134 glycine-rich RNA-bind 99.6 1E-15 2.2E-20 137.4 9.8 81 149-229 33-113 (144)
51 KOG4206 Spliceosomal protein s 99.6 1.1E-14 2.4E-19 134.2 14.3 206 148-403 7-217 (221)
52 KOG1190 Polypyrimidine tract-b 99.6 3.9E-14 8.4E-19 139.6 18.1 236 151-406 151-489 (492)
53 TIGR01659 sex-lethal sex-letha 99.6 5.2E-15 1.1E-19 151.8 8.6 70 151-220 194-263 (346)
54 KOG1365 RNA-binding protein Fu 99.6 2E-14 4.4E-19 140.3 11.2 251 144-403 54-357 (508)
55 KOG0149 Predicted RNA-binding 99.5 3.7E-14 8E-19 130.8 7.3 88 327-415 11-98 (247)
56 PF00076 RRM_1: RNA recognitio 99.5 5.5E-14 1.2E-18 110.3 7.3 70 153-223 1-70 (70)
57 KOG0149 Predicted RNA-binding 99.5 5.4E-14 1.2E-18 129.8 7.8 77 150-227 12-88 (247)
58 KOG1548 Transcription elongati 99.5 4.4E-13 9.6E-18 129.9 14.1 197 149-404 133-348 (382)
59 KOG4212 RNA-binding protein hn 99.5 7.6E-13 1.7E-17 131.4 14.5 170 227-405 41-291 (608)
60 PF00076 RRM_1: RNA recognitio 99.4 2.3E-13 5E-18 106.7 7.0 70 331-401 1-70 (70)
61 KOG0106 Alternative splicing f 99.4 1.3E-13 2.8E-18 128.7 5.3 149 231-402 2-165 (216)
62 KOG0113 U1 small nuclear ribon 99.4 1.1E-12 2.5E-17 124.7 11.4 91 326-416 99-189 (335)
63 KOG0122 Translation initiation 99.4 3.9E-13 8.4E-18 124.5 8.0 83 148-230 187-269 (270)
64 KOG0121 Nuclear cap-binding pr 99.4 2.9E-13 6.3E-18 112.6 6.2 81 325-405 33-113 (153)
65 KOG4207 Predicted splicing fac 99.4 3.6E-13 7.7E-18 121.3 7.1 81 327-407 12-92 (256)
66 KOG0121 Nuclear cap-binding pr 99.4 4.2E-13 9.2E-18 111.7 6.9 84 145-228 31-114 (153)
67 PF14259 RRM_6: RNA recognitio 99.4 5.7E-13 1.2E-17 104.6 7.3 69 153-222 1-69 (70)
68 KOG0107 Alternative splicing f 99.4 1E-11 2.2E-16 109.4 14.8 73 328-405 10-82 (195)
69 KOG1457 RNA binding protein (c 99.4 4.5E-12 9.7E-17 115.6 12.8 224 149-396 33-274 (284)
70 KOG0126 Predicted RNA-binding 99.4 5.2E-14 1.1E-18 124.2 -0.3 83 144-226 29-111 (219)
71 PLN03120 nucleic acid binding 99.4 1.2E-12 2.6E-17 125.5 8.8 75 150-228 4-78 (260)
72 KOG0113 U1 small nuclear ribon 99.4 1.2E-12 2.5E-17 124.6 8.0 79 148-226 99-177 (335)
73 KOG0122 Translation initiation 99.4 9.7E-13 2.1E-17 121.9 7.1 80 327-406 188-267 (270)
74 PF14259 RRM_6: RNA recognitio 99.4 1.7E-12 3.6E-17 101.9 7.5 70 331-401 1-70 (70)
75 KOG0125 Ataxin 2-binding prote 99.4 9E-13 1.9E-17 126.8 7.0 83 324-408 92-174 (376)
76 KOG4207 Predicted splicing fac 99.3 1.4E-12 3.1E-17 117.5 6.7 82 146-227 9-90 (256)
77 PLN03120 nucleic acid binding 99.3 3.7E-12 8E-17 122.2 8.6 79 328-410 4-82 (260)
78 KOG0126 Predicted RNA-binding 99.3 3.7E-13 8.1E-18 118.8 1.3 84 328-411 35-118 (219)
79 PLN03121 nucleic acid binding 99.3 5.6E-12 1.2E-16 118.8 8.9 77 149-229 4-80 (243)
80 COG0724 RNA-binding proteins ( 99.3 1.6E-11 3.4E-16 123.7 13.0 169 150-388 115-285 (306)
81 KOG0106 Alternative splicing f 99.3 2.2E-12 4.8E-17 120.5 5.5 138 151-311 2-165 (216)
82 PLN03213 repressor of silencin 99.3 7.1E-12 1.5E-16 126.3 8.5 77 149-229 9-87 (759)
83 smart00362 RRM_2 RNA recogniti 99.3 2.2E-11 4.7E-16 95.3 8.6 71 152-224 1-71 (72)
84 KOG0107 Alternative splicing f 99.3 7.9E-12 1.7E-16 110.1 6.3 75 149-228 9-83 (195)
85 KOG0130 RNA-binding protein RB 99.2 2.2E-11 4.7E-16 102.4 6.8 87 322-408 66-152 (170)
86 smart00360 RRM RNA recognition 99.2 3.8E-11 8.3E-16 93.5 8.0 70 155-224 1-70 (71)
87 KOG0114 Predicted RNA-binding 99.2 2.7E-11 5.9E-16 97.1 7.0 77 148-227 16-92 (124)
88 PLN03213 repressor of silencin 99.2 2.1E-11 4.5E-16 123.0 7.4 75 328-406 10-86 (759)
89 KOG0125 Ataxin 2-binding prote 99.2 1.8E-11 3.9E-16 118.0 6.6 78 149-228 95-172 (376)
90 KOG4307 RNA binding protein RB 99.2 1.1E-09 2.4E-14 115.0 20.1 142 146-293 307-494 (944)
91 KOG0114 Predicted RNA-binding 99.2 4E-11 8.7E-16 96.2 7.2 75 328-405 18-92 (124)
92 smart00362 RRM_2 RNA recogniti 99.2 4.6E-11 1E-15 93.4 7.5 71 330-402 1-71 (72)
93 smart00360 RRM RNA recognition 99.2 6E-11 1.3E-15 92.4 8.0 70 333-402 1-70 (71)
94 KOG0111 Cyclophilin-type pepti 99.2 7.5E-12 1.6E-16 113.7 2.6 81 327-407 9-89 (298)
95 PLN03121 nucleic acid binding 99.2 6.8E-11 1.5E-15 111.6 8.4 77 328-408 5-81 (243)
96 KOG0130 RNA-binding protein RB 99.2 2.6E-11 5.7E-16 101.9 4.6 81 146-226 68-148 (170)
97 KOG0111 Cyclophilin-type pepti 99.1 3.3E-11 7.1E-16 109.6 4.5 82 149-230 9-90 (298)
98 KOG0128 RNA-binding protein SA 99.1 1.3E-11 2.8E-16 132.7 1.7 225 149-404 570-811 (881)
99 cd00590 RRM RRM (RNA recogniti 99.1 2.6E-10 5.7E-15 89.5 8.5 73 152-225 1-73 (74)
100 KOG1456 Heterogeneous nuclear 99.1 4.3E-09 9.4E-14 103.1 17.8 231 149-398 119-475 (494)
101 smart00361 RRM_1 RNA recogniti 99.1 2.3E-10 4.9E-15 89.6 7.3 61 342-402 2-69 (70)
102 KOG0415 Predicted peptidyl pro 99.1 4.8E-11 1E-15 115.8 4.0 87 143-229 232-318 (479)
103 KOG1365 RNA-binding protein Fu 99.1 3.6E-10 7.8E-15 110.9 10.0 148 149-300 160-349 (508)
104 cd00590 RRM RRM (RNA recogniti 99.1 4.2E-10 9.1E-15 88.4 8.3 73 330-403 1-73 (74)
105 KOG0108 mRNA cleavage and poly 99.1 2.6E-10 5.6E-15 118.7 7.2 79 151-229 19-97 (435)
106 KOG0116 RasGAP SH3 binding pro 99.0 8.4E-10 1.8E-14 114.2 10.5 76 329-405 289-364 (419)
107 smart00361 RRM_1 RNA recogniti 99.0 6E-10 1.3E-14 87.2 7.0 61 164-224 2-69 (70)
108 KOG0108 mRNA cleavage and poly 99.0 3.2E-10 6.9E-15 118.1 6.6 80 329-408 19-98 (435)
109 KOG4210 Nuclear localization s 99.0 5.3E-10 1.1E-14 111.4 7.8 175 148-404 86-260 (285)
110 KOG0120 Splicing factor U2AF, 99.0 1.3E-09 2.7E-14 114.1 10.9 159 148-315 287-490 (500)
111 PF13893 RRM_5: RNA recognitio 99.0 1.4E-09 3E-14 81.1 7.4 56 345-405 1-56 (56)
112 COG0724 RNA-binding proteins ( 99.0 7.6E-10 1.6E-14 111.4 8.1 79 328-406 115-193 (306)
113 KOG4660 Protein Mei2, essentia 98.9 5.6E-09 1.2E-13 108.2 10.6 74 145-223 70-143 (549)
114 KOG4208 Nucleolar RNA-binding 98.9 2.8E-09 6E-14 97.0 6.6 78 328-405 49-127 (214)
115 KOG0415 Predicted peptidyl pro 98.9 1.8E-09 4E-14 105.0 4.8 86 325-410 236-321 (479)
116 PF13893 RRM_5: RNA recognitio 98.9 3.4E-09 7.4E-14 79.0 5.3 55 167-226 1-55 (56)
117 KOG4454 RNA binding protein (R 98.8 1.3E-09 2.8E-14 99.5 1.7 138 148-298 7-148 (267)
118 KOG0129 Predicted RNA-binding 98.8 4.4E-08 9.6E-13 100.8 12.5 145 146-294 255-432 (520)
119 KOG4307 RNA binding protein RB 98.8 1.4E-08 3.1E-13 106.8 8.9 76 329-404 868-943 (944)
120 KOG4208 Nucleolar RNA-binding 98.8 1E-08 2.2E-13 93.4 6.5 77 147-223 46-123 (214)
121 KOG0129 Predicted RNA-binding 98.8 7E-08 1.5E-12 99.3 12.7 157 230-389 259-432 (520)
122 KOG0128 RNA-binding protein SA 98.8 4.4E-10 9.6E-15 121.2 -3.5 138 148-300 665-802 (881)
123 KOG0226 RNA-binding proteins [ 98.7 9.7E-09 2.1E-13 96.1 4.6 164 230-403 96-265 (290)
124 KOG0132 RNA polymerase II C-te 98.7 1.6E-08 3.4E-13 108.0 5.3 103 144-252 415-528 (894)
125 KOG4661 Hsp27-ERE-TATA-binding 98.7 2.8E-08 6E-13 102.3 6.1 81 149-229 404-484 (940)
126 KOG0112 Large RNA-binding prot 98.7 2.1E-08 4.5E-13 108.9 5.0 163 144-318 366-532 (975)
127 KOG0132 RNA polymerase II C-te 98.6 8.6E-06 1.9E-10 87.7 23.9 108 230-351 421-529 (894)
128 KOG4205 RNA-binding protein mu 98.6 2.6E-08 5.7E-13 99.5 4.0 82 327-409 5-86 (311)
129 KOG4206 Spliceosomal protein s 98.6 1E-07 2.2E-12 88.5 6.4 79 329-410 10-92 (221)
130 KOG0153 Predicted RNA-binding 98.5 1.5E-07 3.3E-12 92.1 6.4 79 145-229 223-302 (377)
131 KOG4661 Hsp27-ERE-TATA-binding 98.5 1.4E-07 3E-12 97.3 5.9 80 327-406 404-483 (940)
132 KOG1995 Conserved Zn-finger pr 98.4 8E-06 1.7E-10 81.0 15.8 82 328-409 66-155 (351)
133 KOG4676 Splicing factor, argin 98.4 6.5E-08 1.4E-12 95.7 1.2 207 150-398 7-216 (479)
134 KOG0533 RRM motif-containing p 98.4 5.8E-07 1.3E-11 86.4 6.8 78 149-227 82-159 (243)
135 KOG0153 Predicted RNA-binding 98.4 5.5E-07 1.2E-11 88.2 6.5 74 327-406 227-301 (377)
136 KOG0226 RNA-binding proteins [ 98.4 3.2E-07 7E-12 86.1 4.6 156 150-313 96-266 (290)
137 KOG0921 Dosage compensation co 98.4 2.4E-06 5.1E-11 93.4 11.4 14 272-285 899-912 (1282)
138 KOG0112 Large RNA-binding prot 98.4 4.3E-07 9.3E-12 99.0 5.7 155 230-405 372-528 (975)
139 KOG0533 RRM motif-containing p 98.4 3.4E-06 7.3E-11 81.2 11.1 80 328-408 83-162 (243)
140 KOG4454 RNA binding protein (R 98.4 3.1E-07 6.8E-12 84.2 3.7 138 227-392 6-147 (267)
141 KOG4209 Splicing factor RNPS1, 98.3 5.1E-07 1.1E-11 87.1 5.1 81 145-226 96-176 (231)
142 KOG4849 mRNA cleavage factor I 98.3 2.1E-05 4.6E-10 76.9 15.0 76 328-403 80-157 (498)
143 KOG2193 IGF-II mRNA-binding pr 98.3 2.1E-07 4.5E-12 92.9 1.2 152 231-405 2-154 (584)
144 PF04059 RRM_2: RNA recognitio 98.3 2.8E-06 6E-11 69.9 7.5 68 151-218 2-71 (97)
145 KOG0116 RasGAP SH3 binding pro 98.3 1.1E-06 2.4E-11 91.3 6.4 75 149-224 287-361 (419)
146 KOG4209 Splicing factor RNPS1, 98.3 2.7E-06 5.8E-11 82.1 8.5 80 327-407 100-179 (231)
147 KOG1457 RNA binding protein (c 98.1 1.4E-05 3E-10 73.8 8.4 80 328-407 34-117 (284)
148 PF04059 RRM_2: RNA recognitio 98.0 1.9E-05 4.2E-10 64.9 7.7 69 329-397 2-72 (97)
149 KOG3152 TBP-binding protein, a 98.0 4.9E-06 1.1E-10 78.4 4.3 74 149-222 73-158 (278)
150 KOG0151 Predicted splicing reg 97.9 2.6E-05 5.7E-10 83.1 7.3 79 149-227 173-254 (877)
151 KOG4660 Protein Mei2, essentia 97.9 5E-06 1.1E-10 86.7 1.9 71 327-402 74-144 (549)
152 KOG1995 Conserved Zn-finger pr 97.8 2E-05 4.4E-10 78.2 4.9 82 148-229 64-153 (351)
153 KOG1548 Transcription elongati 97.8 3.3E-05 7.2E-10 75.9 6.1 78 329-407 135-220 (382)
154 PF11608 Limkain-b1: Limkain b 97.8 5.7E-05 1.2E-09 59.1 5.8 69 151-229 3-76 (90)
155 KOG2193 IGF-II mRNA-binding pr 97.7 7.2E-06 1.6E-10 82.2 0.4 138 151-301 2-145 (584)
156 KOG3973 Uncharacterized conser 97.7 0.00032 6.9E-09 68.9 11.1 6 239-244 158-163 (465)
157 KOG0151 Predicted splicing reg 97.6 8.8E-05 1.9E-09 79.3 5.9 84 327-410 173-259 (877)
158 PF08777 RRM_3: RNA binding mo 97.6 9.4E-05 2E-09 62.4 4.6 69 329-403 2-75 (105)
159 KOG4210 Nuclear localization s 97.5 7.5E-05 1.6E-09 74.7 3.2 80 149-229 183-263 (285)
160 PF08777 RRM_3: RNA binding mo 97.5 0.00022 4.7E-09 60.2 5.5 58 151-214 2-59 (105)
161 COG5175 MOT2 Transcriptional r 97.4 0.00023 5E-09 69.6 5.1 77 150-226 114-199 (480)
162 PF11608 Limkain-b1: Limkain b 97.3 0.00032 6.9E-09 55.0 4.6 67 329-405 3-74 (90)
163 PF14605 Nup35_RRM_2: Nup53/35 97.2 0.00072 1.6E-08 49.3 5.2 52 151-209 2-53 (53)
164 KOG4849 mRNA cleavage factor I 97.2 0.00031 6.8E-09 69.0 3.6 75 149-223 79-155 (498)
165 KOG2318 Uncharacterized conser 97.1 0.0047 1E-07 65.2 11.3 119 146-301 170-294 (650)
166 KOG1855 Predicted RNA-binding 97.0 0.015 3.3E-07 59.2 14.0 66 327-392 230-308 (484)
167 KOG3152 TBP-binding protein, a 96.9 0.00038 8.2E-09 66.0 1.6 72 328-399 74-157 (278)
168 KOG2314 Translation initiation 96.8 0.004 8.6E-08 65.4 8.1 71 148-219 56-132 (698)
169 KOG2416 Acinus (induces apopto 96.8 0.0013 2.8E-08 69.3 4.6 65 147-217 441-506 (718)
170 KOG0115 RNA-binding protein p5 96.7 0.0024 5.2E-08 60.8 5.2 94 287-397 6-99 (275)
171 KOG2314 Translation initiation 96.7 0.0019 4E-08 67.7 4.9 69 329-398 59-133 (698)
172 KOG0115 RNA-binding protein p5 96.7 0.0024 5.2E-08 60.7 5.1 104 204-312 6-109 (275)
173 COG5175 MOT2 Transcriptional r 96.6 0.0033 7.1E-08 61.7 5.6 79 329-407 115-202 (480)
174 KOG1855 Predicted RNA-binding 96.5 0.0031 6.6E-08 64.2 4.4 67 148-214 229-308 (484)
175 PF14605 Nup35_RRM_2: Nup53/35 96.3 0.0042 9E-08 45.3 3.4 52 329-387 2-53 (53)
176 KOG1996 mRNA splicing factor [ 96.3 0.0075 1.6E-07 58.3 5.9 63 342-404 300-363 (378)
177 KOG2202 U2 snRNP splicing fact 96.0 0.0027 5.8E-08 60.6 1.3 62 165-227 83-145 (260)
178 KOG2202 U2 snRNP splicing fact 96.0 0.0028 6.1E-08 60.4 1.4 62 343-405 83-145 (260)
179 PF05172 Nup35_RRM: Nup53/35/4 95.7 0.028 6.1E-07 46.7 5.9 72 149-222 5-83 (100)
180 PRK11634 ATP-dependent RNA hel 95.6 0.08 1.7E-06 59.6 11.0 58 339-405 498-560 (629)
181 PF05172 Nup35_RRM: Nup53/35/4 95.2 0.051 1.1E-06 45.2 5.9 71 329-401 7-84 (100)
182 PF08952 DUF1866: Domain of un 94.8 0.054 1.2E-06 47.8 5.1 56 343-407 51-106 (146)
183 PF08952 DUF1866: Domain of un 94.7 0.055 1.2E-06 47.8 4.9 70 149-227 26-104 (146)
184 KOG1996 mRNA splicing factor [ 94.6 0.082 1.8E-06 51.3 6.3 75 150-224 281-361 (378)
185 PF08675 RNA_bind: RNA binding 94.3 0.17 3.6E-06 40.0 6.3 56 149-213 8-63 (87)
186 PF10309 DUF2414: Protein of u 94.1 0.23 4.9E-06 37.2 6.4 54 150-212 5-62 (62)
187 KOG4676 Splicing factor, argin 93.8 0.052 1.1E-06 54.8 3.3 76 329-405 8-86 (479)
188 PF03467 Smg4_UPF3: Smg-4/UPF3 93.7 0.081 1.8E-06 49.2 4.3 73 149-221 6-84 (176)
189 PF10309 DUF2414: Protein of u 93.7 0.13 2.9E-06 38.4 4.5 55 328-390 5-62 (62)
190 KOG2416 Acinus (induces apopto 93.3 0.052 1.1E-06 57.7 2.4 76 324-405 440-519 (718)
191 KOG1999 RNA polymerase II tran 93.2 0.31 6.7E-06 55.2 8.4 29 190-218 208-236 (1024)
192 PF11627 HnRNPA1: Nuclear fact 92.1 0.18 3.9E-06 32.6 2.8 13 482-494 16-28 (37)
193 KOG2068 MOT2 transcription fac 91.9 0.12 2.7E-06 51.5 3.0 76 151-226 78-159 (327)
194 PF03467 Smg4_UPF3: Smg-4/UPF3 91.8 0.29 6.3E-06 45.5 5.2 72 328-399 7-84 (176)
195 KOG2591 c-Mpl binding protein, 91.6 0.31 6.8E-06 51.6 5.6 70 147-223 172-245 (684)
196 PF15023 DUF4523: Protein of u 90.5 0.75 1.6E-05 40.2 5.9 63 145-214 81-147 (166)
197 PF10446 DUF2457: Protein of u 90.4 0.18 3.9E-06 52.2 2.5 11 29-39 25-35 (458)
198 KOG2135 Proteins containing th 89.9 0.19 4E-06 52.3 2.1 76 149-231 371-447 (526)
199 PF08675 RNA_bind: RNA binding 89.6 0.91 2E-05 36.0 5.2 54 329-391 10-63 (87)
200 PF11767 SET_assoc: Histone ly 89.4 0.95 2.1E-05 34.5 5.1 53 339-400 11-63 (66)
201 PF15023 DUF4523: Protein of u 89.3 0.83 1.8E-05 39.9 5.3 69 329-405 87-159 (166)
202 PF07576 BRAP2: BRCA1-associat 89.2 2.1 4.6E-05 36.3 7.6 67 329-397 14-81 (110)
203 PF07576 BRAP2: BRCA1-associat 89.0 2.4 5.2E-05 36.0 7.8 68 149-218 12-80 (110)
204 PF10446 DUF2457: Protein of u 87.8 0.45 9.8E-06 49.4 3.2 10 150-159 121-130 (458)
205 KOG1596 Fibrillarin and relate 87.7 2.4 5.2E-05 40.7 7.7 27 572-598 128-155 (317)
206 PF04147 Nop14: Nop14-like fam 87.2 0.6 1.3E-05 54.4 4.2 22 154-175 414-439 (840)
207 KOG2591 c-Mpl binding protein, 86.9 2.4 5.2E-05 45.2 7.9 87 202-296 147-233 (684)
208 KOG4483 Uncharacterized conser 86.3 3.5 7.5E-05 42.2 8.3 66 149-222 390-456 (528)
209 PF04931 DNA_pol_phi: DNA poly 86.1 1.1 2.5E-05 52.0 5.7 7 167-173 741-747 (784)
210 KOG4285 Mitotic phosphoprotein 84.9 2.5 5.3E-05 41.7 6.3 64 150-221 197-260 (350)
211 PF04847 Calcipressin: Calcipr 84.7 1.2 2.6E-05 41.6 4.1 58 342-405 9-68 (184)
212 KOG2068 MOT2 transcription fac 84.7 0.6 1.3E-05 46.8 2.2 77 329-405 78-160 (327)
213 COG4371 Predicted membrane pro 83.7 2.4 5.1E-05 40.6 5.5 14 579-592 271-284 (334)
214 KOG1999 RNA polymerase II tran 83.5 3 6.4E-05 47.7 7.1 24 274-297 209-232 (1024)
215 PF04847 Calcipressin: Calcipr 82.6 2.8 6.1E-05 39.2 5.6 59 163-227 8-68 (184)
216 KOG2253 U1 snRNP complex, subu 82.3 0.77 1.7E-05 50.0 2.0 70 147-225 37-106 (668)
217 KOG0804 Cytoplasmic Zn-finger 82.0 1.9 4E-05 45.0 4.5 67 328-397 74-142 (493)
218 KOG2135 Proteins containing th 81.5 0.82 1.8E-05 47.7 1.8 72 329-407 373-445 (526)
219 KOG0804 Cytoplasmic Zn-finger 81.3 3.7 7.9E-05 42.9 6.3 67 150-218 74-141 (493)
220 PF04094 DUF390: Protein of un 81.0 22 0.00047 39.6 12.2 8 569-576 189-196 (828)
221 KOG2253 U1 snRNP complex, subu 80.8 0.79 1.7E-05 49.9 1.4 70 326-404 38-107 (668)
222 PF03880 DbpA: DbpA RNA bindin 77.5 7.7 0.00017 30.3 5.8 58 339-405 12-74 (74)
223 KOG1924 RhoA GTPase effector D 77.5 13 0.00028 41.7 9.2 13 200-212 207-219 (1102)
224 KOG0262 RNA polymerase I, larg 77.4 5.5 0.00012 46.8 6.7 17 157-173 1448-1464(1640)
225 PF07292 NID: Nmi/IFP 35 domai 73.4 2.6 5.6E-05 34.1 2.1 72 278-350 1-74 (88)
226 PF11767 SET_assoc: Histone ly 72.0 11 0.00025 28.6 5.2 54 161-223 11-64 (66)
227 KOG2318 Uncharacterized conser 71.4 9.4 0.0002 41.2 6.3 81 325-405 171-303 (650)
228 COG5638 Uncharacterized conser 70.7 8.9 0.00019 39.4 5.6 39 147-185 143-186 (622)
229 PF12782 Innate_immun: Inverte 69.7 86 0.0019 29.3 11.3 7 383-389 13-19 (311)
230 KOG4285 Mitotic phosphoprotein 69.6 6.6 0.00014 38.8 4.4 63 329-399 198-260 (350)
231 PF07292 NID: Nmi/IFP 35 domai 69.1 3.8 8.2E-05 33.2 2.2 57 195-251 1-73 (88)
232 COG4371 Predicted membrane pro 68.1 10 0.00022 36.5 5.1 9 558-566 258-266 (334)
233 PF10567 Nab6_mRNP_bdg: RNA-re 67.6 1.4E+02 0.003 29.9 14.8 62 149-210 14-82 (309)
234 KOG4574 RNA-binding protein (c 66.1 2.7 5.9E-05 47.1 1.1 67 152-224 300-368 (1007)
235 PF05918 API5: Apoptosis inhib 66.1 1.9 4.2E-05 47.1 0.0 16 281-296 329-344 (556)
236 PF04094 DUF390: Protein of un 65.1 1.2E+02 0.0026 34.2 13.0 12 338-349 9-20 (828)
237 PRK11634 ATP-dependent RNA hel 64.4 15 0.00032 41.7 6.6 10 379-388 500-509 (629)
238 KOG4574 RNA-binding protein (c 64.2 4.9 0.00011 45.2 2.6 73 330-408 300-374 (1007)
239 PF03880 DbpA: DbpA RNA bindin 62.9 17 0.00037 28.3 4.8 57 161-226 12-73 (74)
240 TIGR02542 B_forsyth_147 Bacter 62.0 25 0.00054 29.6 5.7 107 158-285 11-129 (145)
241 KOG0943 Predicted ubiquitin-pr 60.0 10 0.00022 44.4 4.1 14 9-22 1679-1692(3015)
242 KOG2295 C2H2 Zn-finger protein 59.1 2.5 5.5E-05 45.1 -0.6 71 147-217 228-298 (648)
243 PHA02664 hypothetical protein; 58.1 29 0.00062 34.7 6.3 16 5-20 392-407 (534)
244 KOG2141 Protein involved in hi 56.1 5.9 0.00013 43.9 1.5 12 336-347 552-563 (822)
245 COG4907 Predicted membrane pro 56.1 21 0.00045 37.6 5.2 22 342-363 488-514 (595)
246 KOG4410 5-formyltetrahydrofola 54.3 27 0.00058 34.3 5.4 56 152-212 332-394 (396)
247 KOG3262 H/ACA small nucleolar 54.1 22 0.00048 32.6 4.5 9 352-360 98-106 (215)
248 CHL00114 psbX photosystem II p 54.0 4.7 0.0001 26.8 0.2 18 578-595 1-18 (39)
249 KOG0262 RNA polymerase I, larg 53.6 20 0.00043 42.4 5.1 6 194-199 1442-1447(1640)
250 KOG0526 Nucleosome-binding fac 53.3 18 0.0004 38.7 4.4 8 157-164 534-541 (615)
251 PF07530 PRE_C2HC: Associated 52.7 18 0.00039 27.8 3.2 62 165-229 2-64 (68)
252 KOG2038 CAATT-binding transcri 52.5 6.3 0.00014 44.0 1.0 11 25-35 794-804 (988)
253 smart00596 PRE_C2HC PRE_C2HC d 51.2 22 0.00048 27.2 3.4 62 165-229 2-64 (69)
254 COG5593 Nucleic-acid-binding p 50.9 12 0.00026 40.0 2.7 22 151-172 799-820 (821)
255 KOG0943 Predicted ubiquitin-pr 48.4 15 0.00031 43.2 3.0 7 8-14 1637-1643(3015)
256 PF05285 SDA1: SDA1; InterPro 48.1 8.4 0.00018 39.6 1.1 8 162-169 190-197 (324)
257 PRK14548 50S ribosomal protein 47.7 60 0.0013 26.1 5.6 53 157-212 27-81 (84)
258 COG4547 CobT Cobalamin biosynt 47.6 12 0.00026 39.3 2.1 20 148-167 314-333 (620)
259 KOG2141 Protein involved in hi 47.5 16 0.00034 40.8 3.0 24 374-397 625-648 (822)
260 PF03344 Daxx: Daxx Family; I 46.9 6.4 0.00014 44.7 0.0 6 30-35 387-392 (713)
261 COG5406 Nucleosome binding fac 45.9 11 0.00023 41.2 1.5 7 29-35 895-901 (1001)
262 PF05285 SDA1: SDA1; InterPro 44.7 8.5 0.00018 39.6 0.5 9 242-250 231-239 (324)
263 PF09073 BUD22: BUD22; InterP 44.5 15 0.00033 39.5 2.4 21 380-400 409-429 (432)
264 PF15513 DUF4651: Domain of un 43.6 51 0.0011 24.7 4.2 18 165-182 9-26 (62)
265 PF06596 PsbX: Photosystem II 42.9 7 0.00015 26.1 -0.3 16 578-593 1-16 (39)
266 KOG3915 Transcription regulato 41.9 2.1E+02 0.0045 30.5 9.7 6 568-573 182-187 (641)
267 KOG4019 Calcineurin-mediated s 41.4 15 0.00034 33.7 1.6 70 330-405 12-87 (193)
268 PF02714 DUF221: Domain of unk 41.4 32 0.0007 35.3 4.2 57 195-253 1-57 (325)
269 PF14111 DUF4283: Domain of un 40.3 52 0.0011 29.3 5.0 98 161-266 28-139 (153)
270 TIGR03636 L23_arch archaeal ri 38.6 1.1E+02 0.0023 24.2 5.7 56 154-212 17-74 (77)
271 KOG4213 RNA-binding protein La 37.0 40 0.00086 31.0 3.4 58 150-211 111-169 (205)
272 COG4547 CobT Cobalamin biosynt 36.7 33 0.00072 36.2 3.2 8 217-224 426-433 (620)
273 PHA00370 III attachment protei 34.2 1.9E+02 0.0042 28.2 7.6 14 587-600 279-292 (297)
274 KOG4410 5-formyltetrahydrofola 34.1 51 0.0011 32.5 3.9 47 329-381 331-378 (396)
275 COG5129 MAK16 Nuclear protein 33.8 34 0.00075 32.3 2.6 8 29-36 178-185 (303)
276 COG1512 Beta-propeller domains 33.2 55 0.0012 32.6 4.1 15 237-251 119-133 (271)
277 PLN00088 predicted protein; Pr 32.6 21 0.00046 30.0 0.9 23 578-600 90-112 (127)
278 COG5193 LHP1 La protein, small 32.5 18 0.0004 37.3 0.7 62 149-210 173-244 (438)
279 PF02724 CDC45: CDC45-like pro 32.2 49 0.0011 37.4 4.0 11 245-255 337-347 (622)
280 PF03468 XS: XS domain; Inter 32.0 42 0.00091 28.8 2.7 51 152-205 10-69 (116)
281 KOG1295 Nonsense-mediated deca 29.5 60 0.0013 33.6 3.7 70 149-218 6-78 (376)
282 PF03468 XS: XS domain; Inter 29.2 48 0.001 28.4 2.6 45 340-387 29-74 (116)
283 KOG4483 Uncharacterized conser 28.6 73 0.0016 33.0 4.1 63 328-398 391-454 (528)
284 KOG2773 Apoptosis antagonizing 27.6 41 0.0009 35.5 2.2 11 395-405 444-454 (483)
285 PRK14891 50S ribosomal protein 27.4 19 0.0004 31.1 -0.3 10 28-37 46-55 (131)
286 KOG4008 rRNA processing protei 27.3 47 0.001 31.9 2.3 37 145-181 35-71 (261)
287 PF04959 ARS2: Arsenite-resist 27.2 25 0.00055 33.7 0.6 11 387-397 112-122 (214)
288 KOG2891 Surface glycoprotein [ 27.2 47 0.001 32.5 2.4 68 327-394 148-246 (445)
289 KOG2192 PolyC-binding hnRNP-K 27.1 2.7E+02 0.0058 27.3 7.3 11 387-397 188-198 (390)
290 KOG2147 Nucleolar protein invo 25.4 1.4E+02 0.0031 33.8 5.8 18 158-175 388-409 (823)
291 PRK04989 psbM photosystem II r 24.6 20 0.00044 23.3 -0.4 24 578-601 1-26 (35)
292 smart00157 PRP Major prion pro 24.2 5.9E+02 0.013 23.7 8.8 15 581-595 148-162 (217)
293 KOG4264 Nucleo-cytoplasmic pro 23.9 37 0.00081 36.3 1.1 19 194-212 211-229 (694)
294 PF05470 eIF-3c_N: Eukaryotic 23.8 33 0.00072 38.4 0.8 11 380-390 516-526 (595)
295 PRK14094 psbM photosystem II r 22.8 36 0.00078 23.6 0.5 24 578-601 1-26 (50)
296 PF10567 Nab6_mRNP_bdg: RNA-re 22.6 2.1E+02 0.0046 28.7 5.9 79 327-405 14-105 (309)
297 CHL00080 psbM photosystem II p 21.2 27 0.00059 22.4 -0.3 23 579-601 2-26 (34)
298 PTZ00415 transmission-blocking 21.1 60 0.0013 40.1 2.1 6 195-200 314-319 (2849)
299 PF02714 DUF221: Domain of unk 21.1 1.4E+02 0.0029 30.6 4.7 55 278-349 1-55 (325)
300 PHA00370 III attachment protei 21.0 3.8E+02 0.0083 26.2 7.0 12 586-597 271-282 (297)
301 KOG2295 C2H2 Zn-finger protein 20.5 25 0.00055 37.9 -0.9 69 327-395 230-298 (648)
302 TIGR03038 PS_II_psbM photosyst 20.3 26 0.00056 22.4 -0.5 24 578-601 1-26 (33)
No 1
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=3.8e-47 Score=374.04 Aligned_cols=257 Identities=31% Similarity=0.514 Sum_probs=240.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCee-eCcccccCC
Q 007417 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVI-CGKRCGTAP 226 (604)
Q Consensus 148 ~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l-~g~~i~v~~ 226 (604)
...+.|||+.||.++.|++|.-+|++.|+|-+++|++|+.+|.++|||||.|++++.|++|++.||+..| .|+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 4689999999999999999999999999999999999999999999999999999999999999999877 599999999
Q ss_pred CCCCCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCeecCCCC
Q 007417 227 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 306 (604)
Q Consensus 227 ~~~~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~g~~~ 306 (604)
+..+++|||+|||.++++++|.+.|++.++ +|++|.|...+....++||||||+|.++..|..|.++|-...+.+ .+
T Consensus 161 Svan~RLFiG~IPK~k~keeIlee~~kVte-GVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~kl--wg 237 (506)
T KOG0117|consen 161 SVANCRLFIGNIPKTKKKEEILEEMKKVTE-GVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKL--WG 237 (506)
T ss_pred eeecceeEeccCCccccHHHHHHHHHhhCC-CeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceee--cC
Confidence 999999999999999999999999999987 799999999988899999999999999999999999887766644 56
Q ss_pred cceeecccCCCCCCChhhhccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHH
Q 007417 307 RTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386 (604)
Q Consensus 307 r~l~v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A 386 (604)
..+.|.||.|........+.+.+.|||+||+.++|++.|+++|.+||.|++|+.++| ||||.|.+.++|.+|
T Consensus 238 n~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkA 309 (506)
T KOG0117|consen 238 NAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKA 309 (506)
T ss_pred CcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999866 999999999999999
Q ss_pred HHHhcCCeeCCCccEEEEeeecCCCCCCC
Q 007417 387 INAINNKEFSDGNSKVKLRARLSNPMPKT 415 (604)
Q Consensus 387 ~~~lng~~~~g~~~~v~~~~~~~~~~~~~ 415 (604)
++.|||++|.|..|.|++++..++....+
T Consensus 310 m~~~ngkeldG~~iEvtLAKP~~k~k~~r 338 (506)
T KOG0117|consen 310 MKETNGKELDGSPIEVTLAKPVDKKKKER 338 (506)
T ss_pred HHHhcCceecCceEEEEecCChhhhccch
Confidence 99999999999999999987766554443
No 2
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=7.5e-42 Score=365.49 Aligned_cols=248 Identities=31% Similarity=0.513 Sum_probs=220.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeee-CcccccCCC
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVIC-GKRCGTAPS 227 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~-g~~i~v~~~ 227 (604)
..++|||+|||+++++++|+++|++||.|.+|+|++| .+++++|||||+|.+.++|++||+.|++..|. ++.|.|..+
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 4689999999999999999999999999999999999 88999999999999999999999999998885 888899999
Q ss_pred CCCCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCeecCCCCc
Q 007417 228 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 307 (604)
Q Consensus 228 ~~~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~g~~~r 307 (604)
..+++|||+|||+++++++|.+.|.+++. .+.++.++..+...++++|||||+|.++++|.+|++.|+...+.+ .++
T Consensus 136 ~~~~rLFVgNLP~~~TeeeL~eeFskv~e-gvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l--~Gr 212 (578)
T TIGR01648 136 VDNCRLFVGGIPKNKKREEILEEFSKVTE-GVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQL--WGH 212 (578)
T ss_pred ccCceeEeecCCcchhhHHHHHHhhcccC-CceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEe--cCc
Confidence 89999999999999999999999999864 255555554444567889999999999999999999887654322 368
Q ss_pred ceeecccCCCCCCChhhhccccccccCCCCcccChhhHHhhhccc--CCEEEEEEeecCCCCCcceEEEEEeCCHHHHHH
Q 007417 308 TVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVA 385 (604)
Q Consensus 308 ~l~v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~--G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~ 385 (604)
.|.|.|+.+............++|||+||++.+++++|+++|++| |.|+.|.++ ++||||+|.+.++|.+
T Consensus 213 ~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~k 284 (578)
T TIGR01648 213 VIAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVK 284 (578)
T ss_pred eEEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHH
Confidence 999999998876666666667899999999999999999999999 999999876 4599999999999999
Q ss_pred HHHHhcCCeeCCCccEEEEeeec
Q 007417 386 CINAINNKEFSDGNSKVKLRARL 408 (604)
Q Consensus 386 A~~~lng~~~~g~~~~v~~~~~~ 408 (604)
|++.||+..|.|+.|+|.++...
T Consensus 285 Ai~~lnG~~i~Gr~I~V~~Akp~ 307 (578)
T TIGR01648 285 AMDELNGKELEGSEIEVTLAKPV 307 (578)
T ss_pred HHHHhCCCEECCEEEEEEEccCC
Confidence 99999999999999999988554
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=2.4e-42 Score=361.73 Aligned_cols=255 Identities=22% Similarity=0.386 Sum_probs=224.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCCC
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~ 228 (604)
...+|||+|||+++|+++|+++|++||+|.+|+|++++.+++++|||||+|.+.++|.+||..|++..|.|+.|.|..+.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999997654
Q ss_pred ------CCCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCeec
Q 007417 229 ------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVF 302 (604)
Q Consensus 229 ------~~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~ 302 (604)
...+|||+|||..+++++|+.+|..||. |..+.++.+. .++.++|||||+|.+.++|..|++.|++..+.
T Consensus 82 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~--i~~~~~~~~~-~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~- 157 (352)
T TIGR01661 82 PSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQ--IITSRILSDN-VTGLSKGVGFIRFDKRDEADRAIKTLNGTTPS- 157 (352)
T ss_pred ccccccccceEEECCccccCCHHHHHHHHhccCC--EEEEEEEecC-CCCCcCcEEEEEECCHHHHHHHHHHhCCCccC-
Confidence 3568999999999999999999999998 9999998874 47789999999999999999999999997652
Q ss_pred CCCCcceeecccCCCCCCCh------------------------------------------------------------
Q 007417 303 GHPERTVKVAFAEPLREPDP------------------------------------------------------------ 322 (604)
Q Consensus 303 g~~~r~l~v~~a~~~~~~~~------------------------------------------------------------ 322 (604)
+ ..+++.+.++........
T Consensus 158 g-~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (352)
T TIGR01661 158 G-CTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVA 236 (352)
T ss_pred C-CceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccc
Confidence 1 235677777643221000
Q ss_pred ---------------------------hhhccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEE
Q 007417 323 ---------------------------EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFI 375 (604)
Q Consensus 323 ---------------------------~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV 375 (604)
.......+|||+|||+.+++++|+++|++||.|..|+|+++..|+.++|||||
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV 316 (352)
T TIGR01661 237 QQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFV 316 (352)
T ss_pred cccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEE
Confidence 00001125999999999999999999999999999999999999999999999
Q ss_pred EeCCHHHHHHHHHHhcCCeeCCCccEEEEeeec
Q 007417 376 DFSTHEAAVACINAINNKEFSDGNSKVKLRARL 408 (604)
Q Consensus 376 ~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~~~ 408 (604)
+|.+.++|.+||..|||..|.|+.|+|.|....
T Consensus 317 ~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~ 349 (352)
T TIGR01661 317 SMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNK 349 (352)
T ss_pred EECCHHHHHHHHHHhCCCEECCeEEEEEEccCC
Confidence 999999999999999999999999999987554
No 4
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=1.5e-38 Score=352.41 Aligned_cols=253 Identities=20% Similarity=0.394 Sum_probs=223.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCC--
Q 007417 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS-- 227 (604)
Q Consensus 150 ~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~-- 227 (604)
..+|||+|||.++|+++|+++|++||.|.+|+|+++ .+++++|||||+|.+.++|.+|++.|++..+.++.|.|...
T Consensus 88 ~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~-~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~ 166 (562)
T TIGR01628 88 VGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATD-ENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIK 166 (562)
T ss_pred CCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeec-CCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEecccc
Confidence 357999999999999999999999999999999988 46889999999999999999999999999999998877432
Q ss_pred ---------CCCCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCC
Q 007417 228 ---------EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKP 298 (604)
Q Consensus 228 ---------~~~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~ 298 (604)
...++|||+||+.++|+++|+++|..||. |..+.++++. +++++|||||+|.+.++|.+|++.|++.
T Consensus 167 ~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~--i~~~~i~~~~--~g~~~G~afV~F~~~e~A~~Av~~l~g~ 242 (562)
T TIGR01628 167 KHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGE--ITSAAVMKDG--SGRSRGFAFVNFEKHEDAAKAVEEMNGK 242 (562)
T ss_pred ccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCC--EEEEEEEECC--CCCcccEEEEEECCHHHHHHHHHHhCCc
Confidence 23467999999999999999999999999 9999999874 7889999999999999999999999999
Q ss_pred CeecCCCCcceeecccCCCCCCChh-------------hhccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCC
Q 007417 299 DVVFGHPERTVKVAFAEPLREPDPE-------------IMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMS 365 (604)
Q Consensus 299 ~~~~g~~~r~l~v~~a~~~~~~~~~-------------~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~ 365 (604)
.+.....++.+.|.++..+...... ......+|||+||++.+|+++|+++|++||.|+.|+|+.+ .
T Consensus 243 ~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~ 321 (562)
T TIGR01628 243 KIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-E 321 (562)
T ss_pred EecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-C
Confidence 8843333688888887655433111 1223467999999999999999999999999999999999 6
Q ss_pred CCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEeeec
Q 007417 366 TAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARL 408 (604)
Q Consensus 366 ~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~~~ 408 (604)
++.++|||||+|.+.++|.+|+..||++.|.|+.|.|.++...
T Consensus 322 ~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k 364 (562)
T TIGR01628 322 KGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRK 364 (562)
T ss_pred CCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCc
Confidence 8999999999999999999999999999999999999987543
No 5
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=2.7e-37 Score=342.39 Aligned_cols=245 Identities=23% Similarity=0.437 Sum_probs=220.5
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCCC---
Q 007417 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE--- 228 (604)
Q Consensus 152 ~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~--- 228 (604)
+|||+|||+++|+++|+++|++||.|.+|+|+++..|++++|||||+|.+.++|++||..+++..|.|+.|+|.++.
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999997764
Q ss_pred -----CCCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCeecC
Q 007417 229 -----DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFG 303 (604)
Q Consensus 229 -----~~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~g 303 (604)
...+|||+||+.++++++|+++|+.||. |..|+++.+. +++++|||||+|.+.++|.+|+..+++..+
T Consensus 82 ~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~--i~~~~i~~~~--~g~skg~afV~F~~~e~A~~Ai~~lng~~~--- 154 (562)
T TIGR01628 82 SLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGN--ILSCKVATDE--NGKSRGYGFVHFEKEESAKAAIQKVNGMLL--- 154 (562)
T ss_pred cccccCCCceEEcCCCccCCHHHHHHHHHhcCC--cceeEeeecC--CCCcccEEEEEECCHHHHHHHHHHhcccEe---
Confidence 2468999999999999999999999999 9999999873 788999999999999999999999999877
Q ss_pred CCCcceeecccCCCCCCChhhhccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHH
Q 007417 304 HPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 383 (604)
Q Consensus 304 ~~~r~l~v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A 383 (604)
.++.+.|....+............++|||+|||.++|+++|+++|++||.|..+.|+.+. +++++|||||+|.++++|
T Consensus 155 -~~~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A 232 (562)
T TIGR01628 155 -NDKEVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDA 232 (562)
T ss_pred -cCceEEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHH
Confidence 467888766554433322233345789999999999999999999999999999999884 688999999999999999
Q ss_pred HHHHHHhcCCeeC----CCccEEEEe
Q 007417 384 VACINAINNKEFS----DGNSKVKLR 405 (604)
Q Consensus 384 ~~A~~~lng~~~~----g~~~~v~~~ 405 (604)
.+|++.||+..|. |+.+.|..+
T Consensus 233 ~~Av~~l~g~~i~~~~~g~~l~v~~a 258 (562)
T TIGR01628 233 AKAVEEMNGKKIGLAKEGKKLYVGRA 258 (562)
T ss_pred HHHHHHhCCcEecccccceeeEeecc
Confidence 9999999999999 888777653
No 6
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=3.5e-37 Score=283.22 Aligned_cols=254 Identities=22% Similarity=0.411 Sum_probs=226.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCCC
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~ 228 (604)
....|.|.-||..+|+++|+.+|...|+|++|++++|+.+|.+.||+||.|.++++|++|+..||+..|..+.|+|..+.
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyAR 119 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYAR 119 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEecc
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred C------CCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCeec
Q 007417 229 D------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVF 302 (604)
Q Consensus 229 ~------~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~ 302 (604)
+ ..+|||.+||..+|..+|.++|++||. |..-+|+.| +.++.++|-+||.|....+|+.|++.||+..-.
T Consensus 120 PSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGr--IItSRiL~d-qvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~- 195 (360)
T KOG0145|consen 120 PSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGR--IITSRILVD-QVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPS- 195 (360)
T ss_pred CChhhhcccceEEecCCccchHHHHHHHHHHhhh--hhhhhhhhh-cccceecceeEEEecchhHHHHHHHhccCCCCC-
Confidence 5 478999999999999999999999998 777777777 568999999999999999999999999987642
Q ss_pred CCCCcceeecccCCCCCCC----------------------------------------------------------hhh
Q 007417 303 GHPERTVKVAFAEPLREPD----------------------------------------------------------PEI 324 (604)
Q Consensus 303 g~~~r~l~v~~a~~~~~~~----------------------------------------------------------~~~ 324 (604)
+ ...+|.|+|+....... +..
T Consensus 196 g-~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~ 274 (360)
T KOG0145|consen 196 G-CTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGG 274 (360)
T ss_pred C-CCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCC
Confidence 2 34788888874321100 000
Q ss_pred hccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEE
Q 007417 325 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (604)
Q Consensus 325 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~ 404 (604)
.....+|||-||.+++++.-|.++|.+||.|+.|+|++|..|.+.+||+||.+.+.++|..||..|||..++++.+.|.+
T Consensus 275 ~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsF 354 (360)
T KOG0145|consen 275 PGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 354 (360)
T ss_pred CCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEE
Confidence 01246899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eee
Q 007417 405 RAR 407 (604)
Q Consensus 405 ~~~ 407 (604)
+..
T Consensus 355 Ktn 357 (360)
T KOG0145|consen 355 KTN 357 (360)
T ss_pred ecC
Confidence 754
No 7
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1e-34 Score=292.20 Aligned_cols=252 Identities=25% Similarity=0.388 Sum_probs=222.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCCC
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~ 228 (604)
...||||++||+.+|.++|.++|+.+|+|..|.++.++.++.++||+||.|+-.+++++|++.+++..+.|+.|.|.++.
T Consensus 4 ~g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~ 83 (678)
T KOG0127|consen 4 SGATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAK 83 (678)
T ss_pred CCceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccc
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999876542
Q ss_pred --------------------------------CCCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCccc
Q 007417 229 --------------------------------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRG 276 (604)
Q Consensus 229 --------------------------------~~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG 276 (604)
+..+|.|+|||+.+.+.+|+.+|+.||. |.+|.|.+.. .++..|
T Consensus 84 ~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~--V~Ei~IP~k~--dgklcG 159 (678)
T KOG0127|consen 84 KRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGK--VVEIVIPRKK--DGKLCG 159 (678)
T ss_pred ccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcce--EEEEEcccCC--CCCccc
Confidence 1458999999999999999999999999 9999999764 566669
Q ss_pred EEEEEecCHHHHHHHHHHhCCCCeecCCCCcceeecccCCCCCCCh----------------------------------
Q 007417 277 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDP---------------------------------- 322 (604)
Q Consensus 277 ~afV~f~~~e~A~~Al~~l~~~~~~~g~~~r~l~v~~a~~~~~~~~---------------------------------- 322 (604)
||||.|....+|..|++.+|+..| .+|+|.|.||.++.....
T Consensus 160 FaFV~fk~~~dA~~Al~~~N~~~i----~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~ 235 (678)
T KOG0127|consen 160 FAFVQFKEKKDAEKALEFFNGNKI----DGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDG 235 (678)
T ss_pred eEEEEEeeHHHHHHHHHhccCcee----cCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcc
Confidence 999999999999999999999999 689999999954421000
Q ss_pred ---------------------------------------------------hhhccccccccCCCCcccChhhHHhhhcc
Q 007417 323 ---------------------------------------------------EIMAHVKTVFLDGVPPHWKENQIRDQIKG 351 (604)
Q Consensus 323 ---------------------------------------------------~~~~~~~~l~v~nLp~~~t~~~l~~~F~~ 351 (604)
.......+|||+|||+++|++.|.++|++
T Consensus 236 e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fsk 315 (678)
T KOG0127|consen 236 EEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSK 315 (678)
T ss_pred cccccccccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHh
Confidence 00001258999999999999999999999
Q ss_pred cCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh-----cC-CeeCCCccEEEEeeec
Q 007417 352 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI-----NN-KEFSDGNSKVKLRARL 408 (604)
Q Consensus 352 ~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~l-----ng-~~~~g~~~~v~~~~~~ 408 (604)
||.|..+.|+.++.|+.++|.|||.|.+..+|..||.+. .| ..|.||.|.|.+++..
T Consensus 316 FG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~R 378 (678)
T KOG0127|consen 316 FGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTR 378 (678)
T ss_pred hccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccch
Confidence 999999999999999999999999999999999999876 23 5789999999987664
No 8
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=6e-34 Score=307.87 Aligned_cols=239 Identities=21% Similarity=0.219 Sum_probs=200.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhc--CCCeeeCcccccCC
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM--KNPVICGKRCGTAP 226 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l--~~~~l~g~~i~v~~ 226 (604)
++++|||+|||+++|+++|+++|++||.|.+|+|+++ ++||||+|.+.++|++|++.+ ++..|.|+.|.|.+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 4689999999999999999999999999999999853 689999999999999999864 67889999998865
Q ss_pred CCC------------------CCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHH
Q 007417 227 SED------------------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDA 288 (604)
Q Consensus 227 ~~~------------------~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A 288 (604)
+.. ..+|+|.||++.+|+++|+++|+.||. |..|.|+++. .+++|||+|.+.++|
T Consensus 75 s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~--V~~v~i~~~~-----~~~~afVef~~~~~A 147 (481)
T TIGR01649 75 STSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGK--VLRIVTFTKN-----NVFQALVEFESVNSA 147 (481)
T ss_pred cCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCC--EEEEEEEecC-----CceEEEEEECCHHHH
Confidence 421 126899999999999999999999999 9999998752 246899999999999
Q ss_pred HHHHHHhCCCCeecCCCCcceeecccCCCCC--------------------C-----------Ch---------------
Q 007417 289 MAAYKRLQKPDVVFGHPERTVKVAFAEPLRE--------------------P-----------DP--------------- 322 (604)
Q Consensus 289 ~~Al~~l~~~~~~~g~~~r~l~v~~a~~~~~--------------------~-----------~~--------------- 322 (604)
.+|++.||+..+..+ .+.|+|.|+.+... . .+
T Consensus 148 ~~A~~~Lng~~i~~~--~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 225 (481)
T TIGR01649 148 QHAKAALNGADIYNG--CCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGY 225 (481)
T ss_pred HHHHHHhcCCcccCC--ceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCccc
Confidence 999999999998533 24555555432110 0 00
Q ss_pred --------------------------------------------hhhccccccccCCCCc-ccChhhHHhhhcccCCEEE
Q 007417 323 --------------------------------------------EIMAHVKTVFLDGVPP-HWKENQIRDQIKGYGDVIR 357 (604)
Q Consensus 323 --------------------------------------------~~~~~~~~l~v~nLp~-~~t~~~l~~~F~~~G~v~~ 357 (604)
......++|||+|||+ .+|+++|+++|+.||.|..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~ 305 (481)
T TIGR01649 226 SSHGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVER 305 (481)
T ss_pred ccCCCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEE
Confidence 0011346899999998 6999999999999999999
Q ss_pred EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEeee
Q 007417 358 IVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407 (604)
Q Consensus 358 v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~~ 407 (604)
|+|+++ .+|||||+|.++++|..||..|||..|.|+.|.|.++..
T Consensus 306 vki~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~ 350 (481)
T TIGR01649 306 VKFMKN-----KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQ 350 (481)
T ss_pred EEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccc
Confidence 999986 379999999999999999999999999999999987643
No 9
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=8e-34 Score=307.58 Aligned_cols=247 Identities=23% Similarity=0.392 Sum_probs=211.0
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCC
Q 007417 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (604)
Q Consensus 147 ~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (604)
....++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||. |++..|.|+.|.|..
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 4467899999999999999999999999999999999999999999999999999999999997 899999999988754
Q ss_pred CC------------------CCCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHH
Q 007417 227 SE------------------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDA 288 (604)
Q Consensus 227 ~~------------------~~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A 288 (604)
+. ..++|||+|||..+|+++|+++|+.||. |..|.|+.+. .+++++|||||+|.+.++|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~--i~~v~~~~d~-~~g~~~g~afV~f~~~e~A 241 (457)
T TIGR01622 165 SQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGD--IEDVQLHRDP-ETGRSKGFGFIQFHDAEEA 241 (457)
T ss_pred cchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCC--eEEEEEEEcC-CCCccceEEEEEECCHHHH
Confidence 32 1478999999999999999999999999 9999999884 4678999999999999999
Q ss_pred HHHHHHhCCCCeecCCCCcceeecccCCCCCC------------------------------------------------
Q 007417 289 MAAYKRLQKPDVVFGHPERTVKVAFAEPLREP------------------------------------------------ 320 (604)
Q Consensus 289 ~~Al~~l~~~~~~~g~~~r~l~v~~a~~~~~~------------------------------------------------ 320 (604)
.+|+..|++..+ .++.|.|.|+......
T Consensus 242 ~~A~~~l~g~~i----~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (457)
T TIGR01622 242 KEALEVMNGFEL----AGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGS 317 (457)
T ss_pred HHHHHhcCCcEE----CCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccc
Confidence 999999999776 5788999885311000
Q ss_pred -----------------Ch------------------h--hhccccccccCCCCcccC----------hhhHHhhhcccC
Q 007417 321 -----------------DP------------------E--IMAHVKTVFLDGVPPHWK----------ENQIRDQIKGYG 353 (604)
Q Consensus 321 -----------------~~------------------~--~~~~~~~l~v~nLp~~~t----------~~~l~~~F~~~G 353 (604)
.+ . .....++|+|.||....+ .++|++.|++||
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G 397 (457)
T TIGR01622 318 KIALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYG 397 (457)
T ss_pred hhhhhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcC
Confidence 00 0 012345678888844333 368999999999
Q ss_pred CEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEe
Q 007417 354 DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (604)
Q Consensus 354 ~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~ 405 (604)
.|+.|.|... .+.|++||+|.++++|.+|+..|||+.|.|+.|.+.+.
T Consensus 398 ~v~~v~v~~~----~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~ 445 (457)
T TIGR01622 398 GVVHIYVDTK----NSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFV 445 (457)
T ss_pred CeeEEEEeCC----CCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEE
Confidence 9999998643 45799999999999999999999999999999999875
No 10
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=9.9e-34 Score=278.03 Aligned_cols=258 Identities=27% Similarity=0.483 Sum_probs=227.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCC-eeeCc--ccccC
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNP-VICGK--RCGTA 225 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~-~l~g~--~i~v~ 225 (604)
+.-+|||+-||..++|.||+++|++||.|.+|.|++|+.|+.++|||||+|.+.++|.+|+.+|++. .|-|- +|.|+
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 4568999999999999999999999999999999999999999999999999999999999999775 35443 44555
Q ss_pred CCC-------CCCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCC
Q 007417 226 PSE-------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKP 298 (604)
Q Consensus 226 ~~~-------~~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~ 298 (604)
+++ ..++|||+-|++.+|+.+++++|.+||. |++|.|++++ .+.+|||+||.|.+.+.|..||+.||+.
T Consensus 113 ~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~--Ied~~ilrd~--~~~sRGcaFV~fstke~A~~Aika~ng~ 188 (510)
T KOG0144|consen 113 YADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGH--IEDCYILRDP--DGLSRGCAFVKFSTKEMAVAAIKALNGT 188 (510)
T ss_pred ccchhhhccccchhhhhhhccccccHHHHHHHHHhhCc--cchhhheecc--cccccceeEEEEehHHHHHHHHHhhccc
Confidence 543 3678999999999999999999999999 9999999985 7899999999999999999999999999
Q ss_pred CeecCCCCcceeecccCCCCCCCh--------------------------------------------------------
Q 007417 299 DVVFGHPERTVKVAFAEPLREPDP-------------------------------------------------------- 322 (604)
Q Consensus 299 ~~~~g~~~r~l~v~~a~~~~~~~~-------------------------------------------------------- 322 (604)
..+-|+ ..+|.|+||++++....
T Consensus 189 ~tmeGc-s~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~ 267 (510)
T KOG0144|consen 189 QTMEGC-SQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLG 267 (510)
T ss_pred eeeccC-CCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCC
Confidence 998885 58999999976644000
Q ss_pred --------------------------------------------------------------------------------
Q 007417 323 -------------------------------------------------------------------------------- 322 (604)
Q Consensus 323 -------------------------------------------------------------------------------- 322 (604)
T Consensus 268 ~l~a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~ 347 (510)
T KOG0144|consen 268 PLNATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNL 347 (510)
T ss_pred CcchhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhccc
Confidence
Q ss_pred -----------------------------------------------------------------------hhhcccccc
Q 007417 323 -----------------------------------------------------------------------EIMAHVKTV 331 (604)
Q Consensus 323 -----------------------------------------------------------------------~~~~~~~~l 331 (604)
..-.....|
T Consensus 348 ~~~~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanl 427 (510)
T KOG0144|consen 348 AGGMAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANL 427 (510)
T ss_pred ccccccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccce
Confidence 000011369
Q ss_pred ccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEeeecCCC
Q 007417 332 FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNP 411 (604)
Q Consensus 332 ~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~~~~~~ 411 (604)
||.+||.+.-+.+|-..|..||.|...++..|+.|+-+++|+||.|++..+|..||..|||..|+.++++|.++...-.|
T Consensus 428 fiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~np 507 (510)
T KOG0144|consen 428 FIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRNNP 507 (510)
T ss_pred eeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998765444
No 11
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.8e-35 Score=297.71 Aligned_cols=198 Identities=24% Similarity=0.374 Sum_probs=148.6
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhc-----CC-CeeeC
Q 007417 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM-----KN-PVICG 219 (604)
Q Consensus 146 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l-----~~-~~l~g 219 (604)
......||||+||||++|+++|.++|++||+|.+++|+.++.|++++|+|||.|.+..+|+.||... .+ ..|.|
T Consensus 288 n~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~G 367 (678)
T KOG0127|consen 288 NITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDG 367 (678)
T ss_pred cccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEec
Confidence 3446799999999999999999999999999999999999999999999999999999999999976 23 57889
Q ss_pred cccccCCCCC-------------------------------------------------------------------CCc
Q 007417 220 KRCGTAPSED-------------------------------------------------------------------NDT 232 (604)
Q Consensus 220 ~~i~v~~~~~-------------------------------------------------------------------~~~ 232 (604)
|.|.|..+-. -++
T Consensus 368 R~Lkv~~Av~RkeA~dmeqkk~~Kk~~gkrNLyLa~EG~I~~gt~aAeglS~~Dm~kRer~~~~k~k~lknpnlhlSrtR 447 (678)
T KOG0127|consen 368 RLLKVTLAVTRKEAADMEQKKKRKKPKGKRNLYLAREGLIRDGTPAAEGLSATDMAKRERIAERKRKKLKNPNLHLSRTR 447 (678)
T ss_pred cEEeeeeccchHHHHHHHHHhhhhccCCccceeeeccCccccCChhhcccchhhHHHHHHHHHHHHHhhcCCceeeehhh
Confidence 9888754311 357
Q ss_pred ceecccCCCCcHHHHHHHHHhcC----CcceeEEEEeccccC--CCCcccEEEEEecCHHHHHHHHHHhCCCCeecCCCC
Q 007417 233 LFVGNICNTWTKEAIKQKLKDYG----VEGVENINLVSDIQH--EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 306 (604)
Q Consensus 233 l~v~nlp~~~te~~l~~~f~~~G----~~~v~~i~i~~~~~~--~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~g~~~ 306 (604)
|.|.|||..+....|..+....- ..-+..|+.+...+. .+.+.||+|+.|..++.|.+|++.+ +..
T Consensus 448 L~i~Nlpramn~KqL~~Ll~~Av~~~at~~kk~~R~~~~le~~~k~~s~g~aF~~f~EhEhalkalk~~-G~l------- 519 (678)
T KOG0127|consen 448 LVIRNLPRAMNPKQLNRLLRDAVTGFATKVKKCIRQIKFLEEEKKNYSEGYAFVGFTEHEHALKALKVL-GVL------- 519 (678)
T ss_pred hhhhcCccccCHHHHHHHHHHHHhhhhhhcchhhhhhhhHHhhhhcccccccccCccHHHHHHHhhhcc-ccc-------
Confidence 88899999999999998876541 111223344443322 4567899999999999999998754 110
Q ss_pred cceeecccCCCCCCChhhhccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHH
Q 007417 307 RTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386 (604)
Q Consensus 307 r~l~v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A 386 (604)
+...|.+ + +.+..-++++|++|++|..+.-|..+
T Consensus 520 kq~~Vef------------------------------------e----------v~~~k~~~sk~q~f~q~~~hK~a~~e 553 (678)
T KOG0127|consen 520 KQAKVEF------------------------------------E----------VDGVKAGRSKGQGFQQFEKHKRALME 553 (678)
T ss_pred ccceEEE------------------------------------E----------eccchhhhhhhhhHHHHHhhhhhhcc
Confidence 0001100 0 01112377899999999999888888
Q ss_pred HHHhcCCeeCC
Q 007417 387 INAINNKEFSD 397 (604)
Q Consensus 387 ~~~lng~~~~g 397 (604)
+..+|.+.+..
T Consensus 554 ~r~~~pr~~t~ 564 (678)
T KOG0127|consen 554 LRWLNPRKETA 564 (678)
T ss_pred cccCCCccchH
Confidence 87777665443
No 12
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=5.4e-33 Score=305.32 Aligned_cols=246 Identities=21% Similarity=0.361 Sum_probs=202.2
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhcc------------CCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcC
Q 007417 146 KIKKEHEIFIGGLDRDATQEDVRKVFERI------------GEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMK 213 (604)
Q Consensus 146 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~------------G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~ 213 (604)
.....++|||+|||+.+|+++|+++|.+| +.|..|.+ .+.+|||||+|.+.++|..||. |+
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~-l~ 243 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMA-LD 243 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhc-CC
Confidence 34467899999999999999999999985 23444444 4568999999999999999995 99
Q ss_pred CCeeeCcccccCCC-----------------------------------CCCCcceecccCCCCcHHHHHHHHHhcCCcc
Q 007417 214 NPVICGKRCGTAPS-----------------------------------EDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258 (604)
Q Consensus 214 ~~~l~g~~i~v~~~-----------------------------------~~~~~l~v~nlp~~~te~~l~~~f~~~G~~~ 258 (604)
+..|.|+.|.|... ...++|||+|||+.+|+++|+++|+.||.
T Consensus 244 g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~-- 321 (509)
T TIGR01642 244 SIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGD-- 321 (509)
T ss_pred CeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC--
Confidence 99999998877421 12368999999999999999999999998
Q ss_pred eeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCeecCCCCcceeecccCCCCCCC---------------hh
Q 007417 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPD---------------PE 323 (604)
Q Consensus 259 v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~g~~~r~l~v~~a~~~~~~~---------------~~ 323 (604)
|..+.|+.+. .++.++|||||+|.+.++|..|+..|++..+ .++.|.|.++....... ..
T Consensus 322 i~~~~~~~~~-~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~----~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~ 396 (509)
T TIGR01642 322 LKAFNLIKDI-ATGLSKGYAFCEYKDPSVTDVAIAALNGKDT----GDNKLHVQRACVGANQATIDTSNGMAPVTLLAKA 396 (509)
T ss_pred eeEEEEEecC-CCCCcCeEEEEEECCHHHHHHHHHHcCCCEE----CCeEEEEEECccCCCCCCcccccccccccccccc
Confidence 9999999884 5889999999999999999999999999988 46888888874322110 00
Q ss_pred --------hhccccccccCCCCcc--c--------ChhhHHhhhcccCCEEEEEEeecC---CCCCcceEEEEEeCCHHH
Q 007417 324 --------IMAHVKTVFLDGVPPH--W--------KENQIRDQIKGYGDVIRIVLARNM---STAKRKDYGFIDFSTHEA 382 (604)
Q Consensus 324 --------~~~~~~~l~v~nLp~~--~--------t~~~l~~~F~~~G~v~~v~i~~d~---~~g~~~G~afV~F~~~~~ 382 (604)
....+++|+|.||... + ..++|+++|++||.|+.|.|++.. .++...|++||+|.++++
T Consensus 397 ~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~ 476 (509)
T TIGR01642 397 LSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRS 476 (509)
T ss_pred chhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHH
Confidence 0113567899998642 1 236899999999999999998752 345678999999999999
Q ss_pred HHHHHHHhcCCeeCCCccEEEEe
Q 007417 383 AVACINAINNKEFSDGNSKVKLR 405 (604)
Q Consensus 383 A~~A~~~lng~~~~g~~~~v~~~ 405 (604)
|.+||..|||..|.|+.|.|.+.
T Consensus 477 A~~A~~~lnGr~~~gr~v~~~~~ 499 (509)
T TIGR01642 477 AEKAMEGMNGRKFNDRVVVAAFY 499 (509)
T ss_pred HHHHHHHcCCCEECCeEEEEEEe
Confidence 99999999999999999998874
No 13
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=4.7e-33 Score=300.88 Aligned_cols=238 Identities=17% Similarity=0.245 Sum_probs=196.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCc--ccccCC-
Q 007417 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGK--RCGTAP- 226 (604)
Q Consensus 150 ~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~--~i~v~~- 226 (604)
-.+|||.||++.+|+++|+++|+.||.|..|.|+++. .+++|||+|.+.++|.+|++.||+..|.+. .|+|.+
T Consensus 96 ~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~----~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~s 171 (481)
T TIGR01649 96 VLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN----NVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYA 171 (481)
T ss_pred eEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC----CceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEe
Confidence 3589999999999999999999999999999998753 247899999999999999999999988653 111100
Q ss_pred --------------------------------------------------------------------------------
Q 007417 227 -------------------------------------------------------------------------------- 226 (604)
Q Consensus 227 -------------------------------------------------------------------------------- 226 (604)
T Consensus 172 k~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (481)
T TIGR01649 172 KPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRY 251 (481)
T ss_pred cCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCC
Confidence
Q ss_pred --------------------CCCCCcceecccCC-CCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCH
Q 007417 227 --------------------SEDNDTLFVGNICN-TWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCH 285 (604)
Q Consensus 227 --------------------~~~~~~l~v~nlp~-~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~ 285 (604)
.....+|||+||++ .+|+++|+++|+.||. |..|+++++. +|+|||+|.+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~--V~~vki~~~~------~g~afV~f~~~ 323 (481)
T TIGR01649 252 RPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGN--VERVKFMKNK------KETALIEMADP 323 (481)
T ss_pred cccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCC--eEEEEEEeCC------CCEEEEEECCH
Confidence 01345899999998 6999999999999999 9999999862 69999999999
Q ss_pred HHHHHHHHHhCCCCeecCCCCcceeecccCCCCCCCh--------------------------------hhhcccccccc
Q 007417 286 VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDP--------------------------------EIMAHVKTVFL 333 (604)
Q Consensus 286 e~A~~Al~~l~~~~~~~g~~~r~l~v~~a~~~~~~~~--------------------------------~~~~~~~~l~v 333 (604)
++|..|+..|++..+ .++.|+|.++.......+ ....+..+|||
T Consensus 324 ~~A~~Ai~~lng~~l----~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v 399 (481)
T TIGR01649 324 YQAQLALTHLNGVKL----FGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHL 399 (481)
T ss_pred HHHHHHHHHhCCCEE----CCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEE
Confidence 999999999999988 578999987743211000 00123568999
Q ss_pred CCCCcccChhhHHhhhcccCC--EEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCc------cEEEEe
Q 007417 334 DGVPPHWKENQIRDQIKGYGD--VIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGN------SKVKLR 405 (604)
Q Consensus 334 ~nLp~~~t~~~l~~~F~~~G~--v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~------~~v~~~ 405 (604)
+|||..+++++|+++|+.||. |+.|+++... + .++++|||+|.+.++|..||..||++.|.++. |+|.++
T Consensus 400 ~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~-~-~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs 477 (481)
T TIGR01649 400 SNIPLSVSEEDLKELFAENGVHKVKKFKFFPKD-N-ERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFS 477 (481)
T ss_pred ecCCCCCCHHHHHHHHHhcCCccceEEEEecCC-C-CcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEec
Confidence 999999999999999999998 8888887553 2 35899999999999999999999999999985 666554
No 14
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.6e-33 Score=258.13 Aligned_cols=224 Identities=20% Similarity=0.397 Sum_probs=187.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCC
Q 007417 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (604)
Q Consensus 148 ~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (604)
...+||||+||..++||+-|..+|++.|.|..++|+.+-. ....|..- +.+-+ ...
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e~----------------~v~wa~~p-------~nQsk-~t~ 59 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDEL----------------KVNWATAP-------GNQSK-PTS 59 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccceeehhhh----------------ccccccCc-------ccCCC-Ccc
Confidence 3579999999999999999999999999999999987610 00000000 00000 001
Q ss_pred CCCCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCeecCCCCc
Q 007417 228 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 307 (604)
Q Consensus 228 ~~~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~g~~~r 307 (604)
..-..+||+-|...++-+.|++.|.+||+ |.+++|++|. .++++|||+||.|...++|+.||..|++..| ..|
T Consensus 60 ~~hfhvfvgdls~eI~~e~lr~aF~pFGe--vS~akvirD~-~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWl----G~R 132 (321)
T KOG0148|consen 60 NQHFHVFVGDLSPEIDNEKLREAFAPFGE--VSDAKVIRDM-NTGKSKGYGFVSFPNKEDAENAIQQMNGQWL----GRR 132 (321)
T ss_pred ccceeEEehhcchhcchHHHHHHhccccc--cccceEeecc-cCCcccceeEEeccchHHHHHHHHHhCCeee----ccc
Confidence 11347899999999999999999999999 9999999995 6999999999999999999999999999988 679
Q ss_pred ceeecccCCCCCCC-----------hhhhccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEE
Q 007417 308 TVKVAFAEPLREPD-----------PEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFID 376 (604)
Q Consensus 308 ~l~v~~a~~~~~~~-----------~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~ 376 (604)
.|+..|+..+.... .......++|||+||+..+|++.|++.|++||.|.+|+|+++ +||+||.
T Consensus 133 ~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVr 206 (321)
T KOG0148|consen 133 TIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVR 206 (321)
T ss_pred eeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEE
Confidence 99999998765311 112334689999999999999999999999999999999988 7899999
Q ss_pred eCCHHHHHHHHHHhcCCeeCCCccEEEEeeec
Q 007417 377 FSTHEAAVACINAINNKEFSDGNSKVKLRARL 408 (604)
Q Consensus 377 F~~~~~A~~A~~~lng~~~~g~~~~v~~~~~~ 408 (604)
|++.+.|..||..||+++|.|..++|.|....
T Consensus 207 F~tkEaAahAIv~mNntei~G~~VkCsWGKe~ 238 (321)
T KOG0148|consen 207 FETKEAAAHAIVQMNNTEIGGQLVRCSWGKEG 238 (321)
T ss_pred ecchhhHHHHHHHhcCceeCceEEEEeccccC
Confidence 99999999999999999999999999986544
No 15
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=1.2e-31 Score=287.39 Aligned_cols=164 Identities=16% Similarity=0.364 Sum_probs=147.7
Q ss_pred hhccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccc
Q 007417 144 DRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCG 223 (604)
Q Consensus 144 ~~~~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~ 223 (604)
.+.....++|||+|||+++|+++|+++|++||.|.+|+|+.++.|++++|||||+|.+.++|++|+..||+..|.|+.|+
T Consensus 101 ~~a~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~Ik 180 (612)
T TIGR01645 101 QQALAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIK 180 (612)
T ss_pred hhhhcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceee
Confidence 34445678999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCC-----------------CCCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHH
Q 007417 224 TAPSE-----------------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHV 286 (604)
Q Consensus 224 v~~~~-----------------~~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e 286 (604)
|.... ..++|||+||++.+++++|+++|+.||. |.+|+|++++ .+++++|||||+|.+.+
T Consensus 181 V~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~--I~svrl~~D~-~tgksKGfGFVeFe~~e 257 (612)
T TIGR01645 181 VGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGE--IVKCQLARAP-TGRGHKGYGFIEYNNLQ 257 (612)
T ss_pred ecccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCC--eeEEEEEecC-CCCCcCCeEEEEECCHH
Confidence 85432 2368999999999999999999999999 9999999985 47889999999999999
Q ss_pred HHHHHHHHhCCCCeecCCCCcceeeccc
Q 007417 287 DAMAAYKRLQKPDVVFGHPERTVKVAFA 314 (604)
Q Consensus 287 ~A~~Al~~l~~~~~~~g~~~r~l~v~~a 314 (604)
+|.+|+..||+..+ .++.|+|.++
T Consensus 258 ~A~kAI~amNg~el----gGr~LrV~kA 281 (612)
T TIGR01645 258 SQSEAIASMNLFDL----GGQYLRVGKC 281 (612)
T ss_pred HHHHHHHHhCCCee----CCeEEEEEec
Confidence 99999999998876 4566666554
No 16
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=1e-31 Score=274.57 Aligned_cols=169 Identities=20% Similarity=0.399 Sum_probs=146.6
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCC
Q 007417 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (604)
Q Consensus 147 ~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (604)
....++|||+|||+++|+++|+++|+.||+|++|+|++++.|++++|||||+|.++++|++||+.|++..|.+++|.|..
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 34678999999999999999999999999999999999999999999999999999999999999999888887765443
Q ss_pred CCCCCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCeecCCCC
Q 007417 227 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 306 (604)
Q Consensus 227 ~~~~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~g~~~ 306 (604)
+.+. .
T Consensus 184 a~p~------------------------------------------------------------------~--------- 188 (346)
T TIGR01659 184 ARPG------------------------------------------------------------------G--------- 188 (346)
T ss_pred cccc------------------------------------------------------------------c---------
Confidence 2110 0
Q ss_pred cceeecccCCCCCCChhhhccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHH
Q 007417 307 RTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386 (604)
Q Consensus 307 r~l~v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A 386 (604)
. ....++|||+|||+.+|+++|+++|++||.|+.|+|++++.+++++|||||+|.++++|.+|
T Consensus 189 ~-----------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~A 251 (346)
T TIGR01659 189 E-----------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEA 251 (346)
T ss_pred c-----------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHH
Confidence 0 00124799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeeCCCccEEEEeee
Q 007417 387 INAINNKEFSDGNSKVKLRAR 407 (604)
Q Consensus 387 ~~~lng~~~~g~~~~v~~~~~ 407 (604)
|+.||+..|.++...|.+..+
T Consensus 252 i~~lng~~~~g~~~~l~V~~a 272 (346)
T TIGR01659 252 ISALNNVIPEGGSQPLTVRLA 272 (346)
T ss_pred HHHhCCCccCCCceeEEEEEC
Confidence 999999999886544444433
No 17
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=6.1e-30 Score=262.74 Aligned_cols=242 Identities=21% Similarity=0.415 Sum_probs=212.7
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCC-----
Q 007417 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS----- 227 (604)
Q Consensus 153 vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~----- 227 (604)
|||.||+.+++..+|.++|+.||+|.+|++.++.. | ++|| ||+|.+++.|++|++.+|+..+.++.|.|...
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 99999999999999999999999999999999854 5 9999 99999999999999999999999998877332
Q ss_pred ---------CCCCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCC
Q 007417 228 ---------EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKP 298 (604)
Q Consensus 228 ---------~~~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~ 298 (604)
..-+.+++.+++...+...|..+|..+|. |..+.++.+. .+.+++|+||.|.+.++|..|+..|++.
T Consensus 156 r~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~--i~s~~v~~~~--~g~~~~~gfv~f~~~e~a~~av~~l~~~ 231 (369)
T KOG0123|consen 156 REAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGS--ITSVAVMRDS--IGKSKGFGFVNFENPEDAKKAVETLNGK 231 (369)
T ss_pred hcccccchhhhhhhhheeccccccchHHHHHhhcccCc--ceEEEEeecC--CCCCCCccceeecChhHHHHHHHhccCC
Confidence 22468899999999999999999999999 9999999874 6779999999999999999999999998
Q ss_pred CeecCCCCcceeecccCCCCCCC-------------hhhhccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCC
Q 007417 299 DVVFGHPERTVKVAFAEPLREPD-------------PEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMS 365 (604)
Q Consensus 299 ~~~~g~~~r~l~v~~a~~~~~~~-------------~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~ 365 (604)
.. .+..+.|..+..+.+.. +........|+|.||+..++.+.|+.+|+.||.|+.++|+.+.
T Consensus 232 ~~----~~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~- 306 (369)
T KOG0123|consen 232 IF----GDKELYVGRAQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDE- 306 (369)
T ss_pred cC----CccceeecccccchhhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhcccceeeEEEEecc-
Confidence 87 34566666655432211 1123345689999999999999999999999999999999884
Q ss_pred CCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEee
Q 007417 366 TAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 366 ~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
.++++||+||+|.+.++|..|+..+|+..+.++.+.|.+..
T Consensus 307 ~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~q 347 (369)
T KOG0123|consen 307 NGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQ 347 (369)
T ss_pred CCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHh
Confidence 68999999999999999999999999999999998887764
No 18
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.6e-28 Score=252.16 Aligned_cols=238 Identities=23% Similarity=0.439 Sum_probs=213.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCCCC-
Q 007417 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSED- 229 (604)
Q Consensus 151 ~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~~- 229 (604)
..|||+ +++|+..|.++|+.+|+|.+|++++|. | +.|||||.|.++++|.+||.+||...|.|++|+++++..
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 468999 999999999999999999999999998 6 999999999999999999999999999999999999864
Q ss_pred CCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCeecCCCCcce
Q 007417 230 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTV 309 (604)
Q Consensus 230 ~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~g~~~r~l 309 (604)
...|||.||+..++...|.++|+.||. |.+|+++.+. .| ++|| ||+|.+.+.|.+|+..+|+..+ .++.|
T Consensus 76 ~~~~~i~nl~~~~~~~~~~d~f~~~g~--ilS~kv~~~~--~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll----~~kki 145 (369)
T KOG0123|consen 76 PSLVFIKNLDESIDNKSLYDTFSEFGN--ILSCKVATDE--NG-SKGY-FVQFESEESAKKAIEKLNGMLL----NGKKI 145 (369)
T ss_pred CceeeecCCCcccCcHHHHHHHHhhcC--eeEEEEEEcC--CC-ceee-EEEeCCHHHHHHHHHHhcCccc----CCCee
Confidence 455999999999999999999999999 9999999985 44 9999 9999999999999999999888 56888
Q ss_pred eecccCCCCCCChh---hhccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHH
Q 007417 310 KVAFAEPLREPDPE---IMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386 (604)
Q Consensus 310 ~v~~a~~~~~~~~~---~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A 386 (604)
.|............ .....+.++|.+++..++...|.++|.++|.|..+.++.+. .++++||+||.|.++++|..|
T Consensus 146 ~vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~-~g~~~~~gfv~f~~~e~a~~a 224 (369)
T KOG0123|consen 146 YVGLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDS-IGKSKGFGFVNFENPEDAKKA 224 (369)
T ss_pred EEeeccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecC-CCCCCCccceeecChhHHHHH
Confidence 88777655442211 33446789999999999999999999999999999999985 466999999999999999999
Q ss_pred HHHhcCCeeCCCccEEEEe
Q 007417 387 INAINNKEFSDGNSKVKLR 405 (604)
Q Consensus 387 ~~~lng~~~~g~~~~v~~~ 405 (604)
+..||+..+.+..+.|.-+
T Consensus 225 v~~l~~~~~~~~~~~V~~a 243 (369)
T KOG0123|consen 225 VETLNGKIFGDKELYVGRA 243 (369)
T ss_pred HHhccCCcCCccceeeccc
Confidence 9999999999887776543
No 19
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.94 E-value=4.8e-26 Score=237.62 Aligned_cols=251 Identities=20% Similarity=0.288 Sum_probs=203.9
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccC
Q 007417 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (604)
Q Consensus 146 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (604)
+.+....|+|+|||..+..++|..+|..||.|..|.++.. --.|+|+|.++.+|.+|+..|....+..-++.+.
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~------G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle 454 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG------GTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLE 454 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecCcc------cceeeeeecCccchHHHHHHhchhhhccCccccc
Confidence 3445689999999999999999999999999999966422 1249999999999999999886544332222111
Q ss_pred CC--------------------------------------------------------CCCCcceecccCCCCcHHHHHH
Q 007417 226 PS--------------------------------------------------------EDNDTLFVGNICNTWTKEAIKQ 249 (604)
Q Consensus 226 ~~--------------------------------------------------------~~~~~l~v~nlp~~~te~~l~~ 249 (604)
++ ...++|||.||++..|.+.|..
T Consensus 455 ~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~ 534 (725)
T KOG0110|consen 455 WAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLED 534 (725)
T ss_pred cChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHH
Confidence 00 0023499999999999999999
Q ss_pred HHHhcCCcceeEEEEeccc--cCCCCcccEEEEEecCHHHHHHHHHHhCCCCeecCCCCcceeecccCCCCCC----Chh
Q 007417 250 KLKDYGVEGVENINLVSDI--QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREP----DPE 323 (604)
Q Consensus 250 ~f~~~G~~~v~~i~i~~~~--~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~g~~~r~l~v~~a~~~~~~----~~~ 323 (604)
+|...|. |..|.|...+ ...-.+.||+||+|.+.++|..|++.|+++.+ .++.|.|.++...... ...
T Consensus 535 ~F~k~G~--VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvl----dGH~l~lk~S~~k~~~~~gK~~~ 608 (725)
T KOG0110|consen 535 LFSKQGT--VLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVL----DGHKLELKISENKPASTVGKKKS 608 (725)
T ss_pred HHHhcCe--EEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCcee----cCceEEEEeccCccccccccccc
Confidence 9999998 8887766543 22345779999999999999999999999988 6899999988722111 111
Q ss_pred hhccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEE
Q 007417 324 IMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 403 (604)
Q Consensus 324 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~ 403 (604)
.....+.|.|+|||+.++..+++.+|..||.|..|+|+.....+.++|||||+|-++.+|.+|+.+|..++|.||++.+.
T Consensus 609 ~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLE 688 (725)
T KOG0110|consen 609 KKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLE 688 (725)
T ss_pred cccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhhee
Confidence 11235799999999999999999999999999999999886677889999999999999999999999999999999999
Q ss_pred Eeeec
Q 007417 404 LRARL 408 (604)
Q Consensus 404 ~~~~~ 408 (604)
|+...
T Consensus 689 wA~~d 693 (725)
T KOG0110|consen 689 WAKSD 693 (725)
T ss_pred hhccc
Confidence 97554
No 20
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.94 E-value=5.4e-26 Score=238.09 Aligned_cols=161 Identities=21% Similarity=0.412 Sum_probs=142.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCc--ccccCCCC
Q 007417 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGK--RCGTAPSE 228 (604)
Q Consensus 151 ~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~--~i~v~~~~ 228 (604)
++|||+|||..+++++|+++|++||.|..++++.+..++.++|||||+|.+.++|+.|++.|++..+.|. +|.+..+.
T Consensus 90 ~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~ 169 (352)
T TIGR01661 90 ANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFAN 169 (352)
T ss_pred ceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECC
Confidence 4799999999999999999999999999999999988899999999999999999999999999877663 23221110
Q ss_pred --------------------------------------------------------------------------------
Q 007417 229 -------------------------------------------------------------------------------- 228 (604)
Q Consensus 229 -------------------------------------------------------------------------------- 228 (604)
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (352)
T TIGR01661 170 NPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPAT 249 (352)
T ss_pred CCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCccc
Confidence
Q ss_pred ------------------CCCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHH
Q 007417 229 ------------------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMA 290 (604)
Q Consensus 229 ------------------~~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~ 290 (604)
...+|||+|||+.+++++|+++|++||. |.+++|++++ .++.++|||||+|.+.++|.+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~--v~~v~i~~d~-~t~~skG~aFV~F~~~~~A~~ 326 (352)
T TIGR01661 250 DGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGA--VQNVKIIRDL-TTNQCKGYGFVSMTNYDEAAM 326 (352)
T ss_pred cccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCC--eEEEEEeEcC-CCCCccceEEEEECCHHHHHH
Confidence 0115999999999999999999999999 9999999984 589999999999999999999
Q ss_pred HHHHhCCCCeecCCCCcceeecccCCCC
Q 007417 291 AYKRLQKPDVVFGHPERTVKVAFAEPLR 318 (604)
Q Consensus 291 Al~~l~~~~~~~g~~~r~l~v~~a~~~~ 318 (604)
|+..||+..+ .+|.|+|.|...+.
T Consensus 327 Ai~~lnG~~~----~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 327 AILSLNGYTL----GNRVLQVSFKTNKA 350 (352)
T ss_pred HHHHhCCCEE----CCeEEEEEEccCCC
Confidence 9999999988 68999999987653
No 21
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=1.6e-25 Score=215.39 Aligned_cols=255 Identities=16% Similarity=0.338 Sum_probs=206.9
Q ss_pred hhhccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCccc
Q 007417 143 KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRC 222 (604)
Q Consensus 143 ~~~~~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i 222 (604)
+++...--|+|||+.|++++.|+.|+..|..||+|++|.+..|+.|++++|||||+|+-+|.|+.|++.||+..|.||.|
T Consensus 106 rqqALaiMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNi 185 (544)
T KOG0124|consen 106 RQQALAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNI 185 (544)
T ss_pred HHHHHHHhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccc
Confidence 34555567999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCC-----------------CCCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCH
Q 007417 223 GTAPSE-----------------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCH 285 (604)
Q Consensus 223 ~v~~~~-----------------~~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~ 285 (604)
+|-... .-.+|||..+.+++++++|+..|+.||+ |..|.+.+.+ ..+..+||+||+|.+.
T Consensus 186 KVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~--I~~C~LAr~p-t~~~HkGyGfiEy~n~ 262 (544)
T KOG0124|consen 186 KVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGE--IVKCQLARAP-TGRGHKGYGFIEYNNL 262 (544)
T ss_pred cccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcc--eeeEEeeccC-CCCCccceeeEEeccc
Confidence 986543 2479999999999999999999999999 9999999986 4678899999999999
Q ss_pred HHHHHHHHHhCCCCeecCCCCcceeecccCCCCC----------------------------------------------
Q 007417 286 VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLRE---------------------------------------------- 319 (604)
Q Consensus 286 e~A~~Al~~l~~~~~~~g~~~r~l~v~~a~~~~~---------------------------------------------- 319 (604)
.....|+..||--++ .+..++|..+.....
T Consensus 263 qs~~eAiasMNlFDL----GGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~ 338 (544)
T KOG0124|consen 263 QSQSEAIASMNLFDL----GGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGL 338 (544)
T ss_pred cchHHHhhhcchhhc----ccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccc
Confidence 999999998885544 334444433210000
Q ss_pred ---------------------------------------------------------------------------CChh-
Q 007417 320 ---------------------------------------------------------------------------PDPE- 323 (604)
Q Consensus 320 ---------------------------------------------------------------------------~~~~- 323 (604)
..+.
T Consensus 339 vSpA~~aa~p~~~l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~ 418 (544)
T KOG0124|consen 339 VSPAPRAAQPLGTLPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEM 418 (544)
T ss_pred cCccccccCCCCCccccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHH
Confidence 0000
Q ss_pred -----------------------hhccccccccCCC--CcccCh---hhHHhhhcccCCEEEEEEeecCCCCCcc----e
Q 007417 324 -----------------------IMAHVKTVFLDGV--PPHWKE---NQIRDQIKGYGDVIRIVLARNMSTAKRK----D 371 (604)
Q Consensus 324 -----------------------~~~~~~~l~v~nL--p~~~t~---~~l~~~F~~~G~v~~v~i~~d~~~g~~~----G 371 (604)
....++.|.++|+ |.++++ .+|++.|.+||.|.+|.|...+.+..-. -
T Consensus 419 L~~QE~msI~G~sARhlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiV 498 (544)
T KOG0124|consen 419 LSEQEHMSISGSSARHLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIV 498 (544)
T ss_pred hhhhhCccccCccHHHHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhh
Confidence 0012346777887 555544 6889999999999999988776554211 1
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEE
Q 007417 372 YGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (604)
Q Consensus 372 ~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~ 404 (604)
--||+|....++.+|+.+|+|+.|+|+++..++
T Consensus 499 KIFVefS~~~e~~rak~ALdGRfFgGr~VvAE~ 531 (544)
T KOG0124|consen 499 KIFVEFSIASETHRAKQALDGRFFGGRKVVAEV 531 (544)
T ss_pred eeeeeechhhHHHHHHHhhccceecCceeehhh
Confidence 259999999999999999999999999876654
No 22
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.93 E-value=1.3e-25 Score=241.01 Aligned_cols=171 Identities=22% Similarity=0.425 Sum_probs=151.4
Q ss_pred CCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCeecCCCCcce
Q 007417 230 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTV 309 (604)
Q Consensus 230 ~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~g~~~r~l 309 (604)
.++|||+||++.+++++|+++|..||. |.+|.++.++ .+++++|||||+|.+.++|.+|+..|++..+ .++.|
T Consensus 107 ~~rLfVGnLp~~~tEe~Lr~lF~~fG~--I~sV~I~~D~-~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i----~GR~I 179 (612)
T TIGR01645 107 MCRVYVGSISFELREDTIRRAFDPFGP--IKSINMSWDP-ATGKHKGFAFVEYEVPEAAQLALEQMNGQML----GGRNI 179 (612)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCC--EEEEEEeecC-CCCCcCCeEEEEeCcHHHHHHHHHhcCCeEE----eccee
Confidence 468999999999999999999999999 9999999984 5889999999999999999999999999887 57889
Q ss_pred eecccCCCCCCCh------hhhccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHH
Q 007417 310 KVAFAEPLREPDP------EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 383 (604)
Q Consensus 310 ~v~~a~~~~~~~~------~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A 383 (604)
+|.+........+ ......++|||+|||+.+++++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|
T Consensus 180 kV~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A 259 (612)
T TIGR01645 180 KVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQ 259 (612)
T ss_pred eecccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHH
Confidence 9886543321111 1122347899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCeeCCCccEEEEeee
Q 007417 384 VACINAINNKEFSDGNSKVKLRAR 407 (604)
Q Consensus 384 ~~A~~~lng~~~~g~~~~v~~~~~ 407 (604)
.+||..||+..|+|+.|+|.+++.
T Consensus 260 ~kAI~amNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 260 SEAIASMNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred HHHHHHhCCCeeCCeEEEEEecCC
Confidence 999999999999999999886654
No 23
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=4.6e-25 Score=205.10 Aligned_cols=154 Identities=27% Similarity=0.566 Sum_probs=144.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCC--
Q 007417 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS-- 227 (604)
Q Consensus 150 ~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~-- 227 (604)
...|||+.|..+++-++|++.|.+||+|.+++|++|..|+++|||+||.|.++++|+.||..|++..|.+|.|+..++
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 568999999999999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred --------------------CCCCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHH
Q 007417 228 --------------------EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVD 287 (604)
Q Consensus 228 --------------------~~~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~ 287 (604)
.++++|||+|++.-+|++.|+++|+.||. |.+|+++++ +||+||.|.+.|+
T Consensus 142 Kp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~--I~EVRvFk~-------qGYaFVrF~tkEa 212 (321)
T KOG0148|consen 142 KPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGP--IQEVRVFKD-------QGYAFVRFETKEA 212 (321)
T ss_pred CccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCc--ceEEEEecc-------cceEEEEecchhh
Confidence 34789999999999999999999999999 999999988 7999999999999
Q ss_pred HHHHHHHhCCCCeecCCCCcceeecccCC
Q 007417 288 AMAAYKRLQKPDVVFGHPERTVKVAFAEP 316 (604)
Q Consensus 288 A~~Al~~l~~~~~~~g~~~r~l~v~~a~~ 316 (604)
|..||-.+|++++ .+..+++.|...
T Consensus 213 AahAIv~mNntei----~G~~VkCsWGKe 237 (321)
T KOG0148|consen 213 AAHAIVQMNNTEI----GGQLVRCSWGKE 237 (321)
T ss_pred HHHHHHHhcCcee----CceEEEEecccc
Confidence 9999999999999 678888888654
No 24
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.91 E-value=1.5e-23 Score=206.36 Aligned_cols=145 Identities=26% Similarity=0.447 Sum_probs=128.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhc-cCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCC
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFER-IGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~-~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (604)
..+.|||.|||+++...+|+++|.. .|+|++|.+..| .+|+++|+|.|+|+++|.+++|++.|+...+.||.|.|+..
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 4567999999999999999999976 789999999999 56999999999999999999999999999999998876432
Q ss_pred CC------------------------------------------------------------------------------
Q 007417 228 ED------------------------------------------------------------------------------ 229 (604)
Q Consensus 228 ~~------------------------------------------------------------------------------ 229 (604)
.+
T Consensus 122 ~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~ 201 (608)
T KOG4212|consen 122 HDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSA 201 (608)
T ss_pred CchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchh
Confidence 10
Q ss_pred -------------CCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhC
Q 007417 230 -------------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQ 296 (604)
Q Consensus 230 -------------~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~ 296 (604)
..++||.||.+.+....|++.|.-.|. ++.+.+-.++ .+.++|++.++|..+-.|-.||..++
T Consensus 202 ~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGk--v~~vdf~idK--eG~s~G~~vi~y~hpveavqaIsml~ 277 (608)
T KOG4212|consen 202 SFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGK--VQSVDFSIDK--EGNSRGFAVIEYDHPVEAVQAISMLD 277 (608)
T ss_pred hhhhhccCCCCCccceeeeeccccccchHHHHHHhcccee--eeeeceeecc--ccccCCeeEEEecchHHHHHHHHhhc
Confidence 247889999999999999999999998 9999888774 67999999999999999999999888
Q ss_pred CC
Q 007417 297 KP 298 (604)
Q Consensus 297 ~~ 298 (604)
..
T Consensus 278 ~~ 279 (608)
T KOG4212|consen 278 RQ 279 (608)
T ss_pred cC
Confidence 53
No 25
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.91 E-value=1.2e-24 Score=221.53 Aligned_cols=246 Identities=22% Similarity=0.363 Sum_probs=203.0
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCC
Q 007417 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (604)
Q Consensus 147 ~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (604)
++..+|||+--|+..+++-+|.+||+.+|+|.+|+||.|+.+++++|.|||+|.+.+....||. |.|..+.|.+|.|..
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQL 254 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEecc
Confidence 4467899999999999999999999999999999999999999999999999999999999995 899999999888765
Q ss_pred CCC--------------------CCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHH
Q 007417 227 SED--------------------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHV 286 (604)
Q Consensus 227 ~~~--------------------~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e 286 (604)
+.. -..|||+||.++++++.|+..|+.||. |..|.++.+. .+|+++||+||+|.+.+
T Consensus 255 sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~--Ie~v~l~~d~-~tG~skgfGfi~f~~~~ 331 (549)
T KOG0147|consen 255 SEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGK--IENVQLTKDS-ETGRSKGFGFITFVNKE 331 (549)
T ss_pred cHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCccc--ceeeeecccc-ccccccCcceEEEecHH
Confidence 421 134899999999999999999999999 9999999984 59999999999999999
Q ss_pred HHHHHHHHhCCCCeecCCCCcceeecccCCCCC-----------------------------------------------
Q 007417 287 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLRE----------------------------------------------- 319 (604)
Q Consensus 287 ~A~~Al~~l~~~~~~~g~~~r~l~v~~a~~~~~----------------------------------------------- 319 (604)
+|.+|+..||+.++ .++.|+|....-...
T Consensus 332 ~ar~a~e~lngfel----AGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~ 407 (549)
T KOG0147|consen 332 DARKALEQLNGFEL----AGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAIS 407 (549)
T ss_pred HHHHHHHHhcccee----cCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhh
Confidence 99999999999555 567776644311100
Q ss_pred --------------------CChhhh-------ccccccccCCCC--cccC--------hhhHHhhhcccCCEEEEEEee
Q 007417 320 --------------------PDPEIM-------AHVKTVFLDGVP--PHWK--------ENQIRDQIKGYGDVIRIVLAR 362 (604)
Q Consensus 320 --------------------~~~~~~-------~~~~~l~v~nLp--~~~t--------~~~l~~~F~~~G~v~~v~i~~ 362 (604)
....+. ..+.++.++|+= ...| .+++.+.+.+||.|..|.|..
T Consensus 408 ~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ 487 (549)
T KOG0147|consen 408 ALLLLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDK 487 (549)
T ss_pred HHHhccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEcc
Confidence 000001 234566667762 2222 267888999999998887754
Q ss_pred cCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEe
Q 007417 363 NMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (604)
Q Consensus 363 d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~ 405 (604)
. +-|+.||.|.+.++|..|+.+|||.+|.|+.|...+-
T Consensus 488 n-----s~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~ 525 (549)
T KOG0147|consen 488 N-----SAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYL 525 (549)
T ss_pred C-----CCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEe
Confidence 3 3499999999999999999999999999999998873
No 26
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.91 E-value=3.6e-23 Score=222.07 Aligned_cols=190 Identities=22% Similarity=0.370 Sum_probs=153.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCC-eEEEEEee-cCCCCCCcceEEEEEeehHHHHHHHHhcCC--CeeeCccccc
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFERIGE-VIEVRLHK-NFSTNRNKGYAFVKFANKEHAKRALTEMKN--PVICGKRCGT 224 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~~G~-V~~v~i~~-d~~tg~~kG~afV~F~~~e~A~~Al~~l~~--~~l~g~~i~v 224 (604)
+.++|||+|||+++|+++|.++|++++. |+++.++. ...+++++|||||+|.+.++|..|+..|+. ..|.|+.|.|
T Consensus 137 ~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~V 216 (578)
T TIGR01648 137 DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAV 216 (578)
T ss_pred cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEE
Confidence 4689999999999999999999999864 55554433 334568899999999999999999988753 3578998888
Q ss_pred CCCCC-----------CCcceecccCCCCcHHHHHHHHHhc--CCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHH
Q 007417 225 APSED-----------NDTLFVGNICNTWTKEAIKQKLKDY--GVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAA 291 (604)
Q Consensus 225 ~~~~~-----------~~~l~v~nlp~~~te~~l~~~f~~~--G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~A 291 (604)
.++.+ .++|||+||++.+++++|+++|+.| |. |..|.++ ++||||+|.+.++|.+|
T Consensus 217 dwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~--I~rV~~~---------rgfAFVeF~s~e~A~kA 285 (578)
T TIGR01648 217 DWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGK--VERVKKI---------RDYAFVHFEDREDAVKA 285 (578)
T ss_pred EeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCc--eEEEEee---------cCeEEEEeCCHHHHHHH
Confidence 65542 4679999999999999999999999 88 9988775 35999999999999999
Q ss_pred HHHhCCCCeecCCCCcceeecccCCCCCCCh-----------------------hhhccccccccCCCCcccChhhHHhh
Q 007417 292 YKRLQKPDVVFGHPERTVKVAFAEPLREPDP-----------------------EIMAHVKTVFLDGVPPHWKENQIRDQ 348 (604)
Q Consensus 292 l~~l~~~~~~~g~~~r~l~v~~a~~~~~~~~-----------------------~~~~~~~~l~v~nLp~~~t~~~l~~~ 348 (604)
++.||+..+ .++.|+|.|+.+...... .......++++.||++.++++-+.++
T Consensus 286 i~~lnG~~i----~Gr~I~V~~Akp~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~ 361 (578)
T TIGR01648 286 MDELNGKEL----EGSEIEVTLAKPVDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHF 361 (578)
T ss_pred HHHhCCCEE----CCEEEEEEEccCCCcccccccccccCCCcccccccccccCcccCccccccccccccccccccchhhc
Confidence 999999988 689999999987533200 01113467888888888777777777
Q ss_pred hcccC
Q 007417 349 IKGYG 353 (604)
Q Consensus 349 F~~~G 353 (604)
|..+|
T Consensus 362 f~~~g 366 (578)
T TIGR01648 362 PRMPG 366 (578)
T ss_pred cccCc
Confidence 77665
No 27
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=7.9e-22 Score=195.54 Aligned_cols=156 Identities=24% Similarity=0.452 Sum_probs=139.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCC-eEEEEEeecCC-CCCCcceEEEEEeehHHHHHHHHhcC--CCeeeCccccc
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFERIGE-VIEVRLHKNFS-TNRNKGYAFVKFANKEHAKRALTEMK--NPVICGKRCGT 224 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~~G~-V~~v~i~~d~~-tg~~kG~afV~F~~~e~A~~Al~~l~--~~~l~g~~i~v 224 (604)
.+++|||+|||.+.++++|.+.|++.++ |++|.|..++. +.+++|||||+|.+...|.-|..+|- ...|.|..+.|
T Consensus 163 an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tV 242 (506)
T KOG0117|consen 163 ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITV 242 (506)
T ss_pred ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCccee
Confidence 7899999999999999999999999986 88999987764 46899999999999999999998863 34688999999
Q ss_pred CCCCC-----------CCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHH
Q 007417 225 APSED-----------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYK 293 (604)
Q Consensus 225 ~~~~~-----------~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~ 293 (604)
.|+.+ -..|||+||+.++|++.|+++|+.||. |+.|+.++| ||||.|...++|.+|++
T Consensus 243 dWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~--veRVkk~rD---------YaFVHf~eR~davkAm~ 311 (506)
T KOG0117|consen 243 DWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGK--VERVKKPRD---------YAFVHFAEREDAVKAMK 311 (506)
T ss_pred eccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccc--eEEeecccc---------eeEEeecchHHHHHHHH
Confidence 98865 368999999999999999999999999 999998866 99999999999999999
Q ss_pred HhCCCCeecCCCCcceeecccCCCCC
Q 007417 294 RLQKPDVVFGHPERTVKVAFAEPLRE 319 (604)
Q Consensus 294 ~l~~~~~~~g~~~r~l~v~~a~~~~~ 319 (604)
.+|+..+ .+..|.|.+|.|...
T Consensus 312 ~~ngkel----dG~~iEvtLAKP~~k 333 (506)
T KOG0117|consen 312 ETNGKEL----DGSPIEVTLAKPVDK 333 (506)
T ss_pred HhcCcee----cCceEEEEecCChhh
Confidence 9999999 688999998887544
No 28
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=7.2e-24 Score=208.87 Aligned_cols=169 Identities=26% Similarity=0.436 Sum_probs=150.2
Q ss_pred CCCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCeecCCCCcc
Q 007417 229 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 308 (604)
Q Consensus 229 ~~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~g~~~r~ 308 (604)
+.-+|||+-||..|+|.+|+++|++||. |.+|.|++| +.++.++|||||.|.+.++|.+|+.+||+...+.+ ...+
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~--V~einl~kD-k~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG-~~~p 108 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGN--VYEINLIKD-KSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPG-MHHP 108 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCc--eeEEEeecc-cccCcccceEEEEeccHHHHHHHHHHhhcccccCC-CCcc
Confidence 4568999999999999999999999999 999999999 56899999999999999999999999999988776 4589
Q ss_pred eeecccCCCCCCChhhhccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 007417 309 VKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN 388 (604)
Q Consensus 309 l~v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~ 388 (604)
|.|++++..++... ..++|||+-|+..+|+.+++++|++||.|++|.|+++. .+.+||||||+|.+.+.|..||+
T Consensus 109 vqvk~Ad~E~er~~----~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aik 183 (510)
T KOG0144|consen 109 VQVKYADGERERIV----EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIK 183 (510)
T ss_pred eeecccchhhhccc----cchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHH
Confidence 99999987665542 34789999999999999999999999999999999995 58899999999999999999999
Q ss_pred HhcCCe-eCCCccEEEEee
Q 007417 389 AINNKE-FSDGNSKVKLRA 406 (604)
Q Consensus 389 ~lng~~-~~g~~~~v~~~~ 406 (604)
+||+.. +.|....+.++.
T Consensus 184 a~ng~~tmeGcs~PLVVkF 202 (510)
T KOG0144|consen 184 ALNGTQTMEGCSQPLVVKF 202 (510)
T ss_pred hhccceeeccCCCceEEEe
Confidence 999984 667654444433
No 29
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.90 E-value=4.5e-23 Score=223.56 Aligned_cols=172 Identities=20% Similarity=0.321 Sum_probs=150.3
Q ss_pred CCCCCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCeecCCCC
Q 007417 227 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 306 (604)
Q Consensus 227 ~~~~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~g~~~ 306 (604)
....++|||+|||..+++++|+++|+.+|. |..|.|+.+. .+++++|||||+|.+.++|.+|+. |++..+ .+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~--v~~v~i~~d~-~~~~skg~afVeF~~~e~A~~Al~-l~g~~~----~g 157 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGK--VRDVQCIKDR-NSRRSKGVAYVEFYDVESVIKALA-LTGQML----LG 157 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCC--eeEEEEeecC-CCCCcceEEEEEECCHHHHHHHHH-hCCCEE----CC
Confidence 345679999999999999999999999998 9999999984 578999999999999999999996 788777 46
Q ss_pred cceeecccCCCCCCCh-------hhhccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCC
Q 007417 307 RTVKVAFAEPLREPDP-------EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFST 379 (604)
Q Consensus 307 r~l~v~~a~~~~~~~~-------~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~ 379 (604)
++|.|.++........ ......++|||+|||..+|+++|+++|++||.|..|.|+.+..+|+++|||||+|.+
T Consensus 158 ~~i~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~ 237 (457)
T TIGR01622 158 RPIIVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHD 237 (457)
T ss_pred eeeEEeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECC
Confidence 8888877643322111 111225789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeeCCCccEEEEee
Q 007417 380 HEAAVACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 380 ~~~A~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
.++|.+|+..|||..|.|+.|.|.++.
T Consensus 238 ~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 238 AEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred HHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 999999999999999999999999876
No 30
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.90 E-value=1e-21 Score=197.63 Aligned_cols=242 Identities=20% Similarity=0.279 Sum_probs=175.6
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCC
Q 007417 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (604)
Q Consensus 147 ~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (604)
......|.+++|||.||+++|.+||+.|+ |+.+.+.+ .+|+..|-|||+|.+.+++++||++ +...+..+-|.|-.
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~ 82 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFT 82 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEc
Confidence 34567899999999999999999999995 77766654 5799999999999999999999995 54455555554432
Q ss_pred C-----------------CCCCcceecccCCCCcHHHHHHHHHhcCCcceeE-EEEeccccCCCCcccEEEEEecCHHHH
Q 007417 227 S-----------------EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVEN-INLVSDIQHEGLSRGFAFVMFSCHVDA 288 (604)
Q Consensus 227 ~-----------------~~~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~-i~i~~~~~~~g~skG~afV~f~~~e~A 288 (604)
+ .....|.|++||+.+|+++|.++|+..-. +.. |.++.+ ..+++.|.|||+|++.+.|
T Consensus 83 ~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~I--v~~gi~l~~d--~rgR~tGEAfVqF~sqe~a 158 (510)
T KOG4211|consen 83 AGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEI--VPDGILLPMD--QRGRPTGEAFVQFESQESA 158 (510)
T ss_pred cCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcc--cccceeeecc--CCCCcccceEEEecCHHHH
Confidence 2 23567899999999999999999998865 444 555555 3778999999999999999
Q ss_pred HHHHHHhCCCCeecCCCCcceeeccc-----------------------------------CCCC---------------
Q 007417 289 MAAYKRLQKPDVVFGHPERTVKVAFA-----------------------------------EPLR--------------- 318 (604)
Q Consensus 289 ~~Al~~l~~~~~~~g~~~r~l~v~~a-----------------------------------~~~~--------------- 318 (604)
++|+....... ..|.|.|-.+ ....
T Consensus 159 e~Al~rhre~i-----GhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~ 233 (510)
T KOG4211|consen 159 EIALGRHRENI-----GHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGY 233 (510)
T ss_pred HHHHHHHHHhh-----ccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCc
Confidence 99997533210 0011111000 0000
Q ss_pred ---------C-----------CC--------h----h------hhccccccccCCCCcccChhhHHhhhcccCCEEEEEE
Q 007417 319 ---------E-----------PD--------P----E------IMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVL 360 (604)
Q Consensus 319 ---------~-----------~~--------~----~------~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i 360 (604)
. .. + . .......+..++||+..+..+|..+|+..-.+ .|.|
T Consensus 234 ~g~~~~~~~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i 312 (510)
T KOG4211|consen 234 YGFSRYPSLQDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHI 312 (510)
T ss_pred cccccCccccccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEE
Confidence 0 00 0 0 00112578899999999999999999986444 4555
Q ss_pred eecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEE
Q 007417 361 ARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (604)
Q Consensus 361 ~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~ 404 (604)
-.. .+|+..|-|+|+|.|+++|..|+.+ ++..+..+.|.+-+
T Consensus 313 ~ig-~dGr~TGEAdveF~t~edav~Amsk-d~anm~hrYVElFl 354 (510)
T KOG4211|consen 313 EIG-PDGRATGEADVEFATGEDAVGAMGK-DGANMGHRYVELFL 354 (510)
T ss_pred EeC-CCCccCCcceeecccchhhHhhhcc-CCcccCcceeeecc
Confidence 544 4589999999999999999999864 66677777655543
No 31
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=9.6e-22 Score=181.60 Aligned_cols=167 Identities=22% Similarity=0.396 Sum_probs=151.7
Q ss_pred CCCCCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCeecCCCC
Q 007417 227 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 306 (604)
Q Consensus 227 ~~~~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~g~~~ 306 (604)
....++|.|.-||..+|.++|+.+|...|+ |++|++++| +-+|.+-||+||.|-+..+|++|+..||+..+ ..
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGe--iEScKLvRD-KitGqSLGYGFVNYv~p~DAe~AintlNGLrL----Q~ 110 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGE--IESCKLVRD-KITGQSLGYGFVNYVRPKDAEKAINTLNGLRL----QN 110 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccc--eeeeeeeec-cccccccccceeeecChHHHHHHHhhhcceee----cc
Confidence 345678999999999999999999999999 999999999 57999999999999999999999999999988 57
Q ss_pred cceeecccCCCCCCChhhhccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHH
Q 007417 307 RTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386 (604)
Q Consensus 307 r~l~v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A 386 (604)
++|+|.++.|....- ....|||.+||..+|..+|.++|++||.|.--+|+.|..||.+||.+||.|....+|+.|
T Consensus 111 KTIKVSyARPSs~~I-----k~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~A 185 (360)
T KOG0145|consen 111 KTIKVSYARPSSDSI-----KDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEA 185 (360)
T ss_pred ceEEEEeccCChhhh-----cccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHH
Confidence 999999999865433 346899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeeCCCccEEEEe
Q 007417 387 INAINNKEFSDGNSKVKLR 405 (604)
Q Consensus 387 ~~~lng~~~~g~~~~v~~~ 405 (604)
|..|||..-.|..-.+.++
T Consensus 186 Ik~lNG~~P~g~tepItVK 204 (360)
T KOG0145|consen 186 IKGLNGQKPSGCTEPITVK 204 (360)
T ss_pred HHhccCCCCCCCCCCeEEE
Confidence 9999999988865444443
No 32
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.87 E-value=5.7e-22 Score=174.48 Aligned_cols=164 Identities=21% Similarity=0.412 Sum_probs=147.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCCC
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~ 228 (604)
...||||+||+..++++-|.++|-+.|+|+.++|++|+.+...+|||||+|.++|+|+-|++.|+...|.|++|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 45799999999999999999999999999999999999999999999999999999999999999889999999986654
Q ss_pred -------CCCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCee
Q 007417 229 -------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVV 301 (604)
Q Consensus 229 -------~~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~ 301 (604)
...+|||+||.+.+++..|.+.|+.||. -+..-.+++++ .++.+++|+||.|.+.+.+.+|+..+++.-+
T Consensus 88 ~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~-l~~~P~i~rd~-~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l- 164 (203)
T KOG0131|consen 88 AHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGV-LISPPKIMRDP-DTGNPKGFGFINYASFEASDAAIGSMNGQYL- 164 (203)
T ss_pred cccccccccccccccccCcchhHHHHHHHHHhccc-cccCCcccccc-cCCCCCCCeEEechhHHHHHHHHHHhccchh-
Confidence 3578999999999999999999999996 13334777774 5899999999999999999999999999887
Q ss_pred cCCCCcceeecccCCCC
Q 007417 302 FGHPERTVKVAFAEPLR 318 (604)
Q Consensus 302 ~g~~~r~l~v~~a~~~~ 318 (604)
..++++|.++-.+.
T Consensus 165 ---~nr~itv~ya~k~~ 178 (203)
T KOG0131|consen 165 ---CNRPITVSYAFKKD 178 (203)
T ss_pred ---cCCceEEEEEEecC
Confidence 57889998886543
No 33
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.86 E-value=1.8e-20 Score=185.74 Aligned_cols=174 Identities=24% Similarity=0.482 Sum_probs=143.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCCC
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~ 228 (604)
+.++|||++|+|++|++.|+++|.+||+|.+|.+++++.+++++||+||+|.+++...++|.. ....|.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 689999999999999999999999999999999999999999999999999999999998874 4445666665433321
Q ss_pred CCCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCeecCCCCcc
Q 007417 229 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 308 (604)
Q Consensus 229 ~~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~g~~~r~ 308 (604)
+ +. .....
T Consensus 84 ~------------------------------------r~----------------------------~~~~~-------- 91 (311)
T KOG4205|consen 84 S------------------------------------RE----------------------------DQTKV-------- 91 (311)
T ss_pred C------------------------------------cc----------------------------ccccc--------
Confidence 1 00 00000
Q ss_pred eeecccCCCCCCChhhhccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 007417 309 VKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN 388 (604)
Q Consensus 309 l~v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~ 388 (604)
......++|||++||..+++++|+++|.+||.|..+.++.|..+.+++||+||.|.+++.+.+++.
T Consensus 92 --------------~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~ 157 (311)
T KOG4205|consen 92 --------------GRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL 157 (311)
T ss_pred --------------ccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc
Confidence 000134789999999999999999999999999999999999999999999999999999999875
Q ss_pred HhcCCeeCCCccEEEEeeecCC
Q 007417 389 AINNKEFSDGNSKVKLRARLSN 410 (604)
Q Consensus 389 ~lng~~~~g~~~~v~~~~~~~~ 410 (604)
..-+.|.++.+.|..+.....
T Consensus 158 -~~f~~~~gk~vevkrA~pk~~ 178 (311)
T KOG4205|consen 158 -QKFHDFNGKKVEVKRAIPKEV 178 (311)
T ss_pred -cceeeecCceeeEeeccchhh
Confidence 677899998877776655443
No 34
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.86 E-value=7.8e-21 Score=209.00 Aligned_cols=170 Identities=20% Similarity=0.365 Sum_probs=136.4
Q ss_pred CCCCCCcceecccCCCCcHHHHHHHHHhcCC----------cceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHh
Q 007417 226 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGV----------EGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRL 295 (604)
Q Consensus 226 ~~~~~~~l~v~nlp~~~te~~l~~~f~~~G~----------~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l 295 (604)
.....++|||+|||+.+|+++|+++|..++. ..|..+.+ .+.+|||||+|.+.++|..|| +|
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~-------~~~kg~afVeF~~~e~A~~Al-~l 242 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI-------NKEKNFAFLEFRTVEEATFAM-AL 242 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE-------CCCCCEEEEEeCCHHHHhhhh-cC
Confidence 3445789999999999999999999998621 01333333 345799999999999999999 58
Q ss_pred CCCCeecCCCCcceeecccCCCCC----------CC--------------hhhhccccccccCCCCcccChhhHHhhhcc
Q 007417 296 QKPDVVFGHPERTVKVAFAEPLRE----------PD--------------PEIMAHVKTVFLDGVPPHWKENQIRDQIKG 351 (604)
Q Consensus 296 ~~~~~~~g~~~r~l~v~~a~~~~~----------~~--------------~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~ 351 (604)
++..+ .++.|.|........ .. .......++|||+|||+.+++++|+++|+.
T Consensus 243 ~g~~~----~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~ 318 (509)
T TIGR01642 243 DSIIY----SNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLES 318 (509)
T ss_pred CCeEe----eCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 88766 357777764321110 00 001123468999999999999999999999
Q ss_pred cCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEeee
Q 007417 352 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407 (604)
Q Consensus 352 ~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~~ 407 (604)
||.|..+.|+.+..+|.++|||||+|.+.++|..||..|||..|.|+.|.|.++..
T Consensus 319 ~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~ 374 (509)
T TIGR01642 319 FGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACV 374 (509)
T ss_pred cCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECcc
Confidence 99999999999999999999999999999999999999999999999998887643
No 35
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.85 E-value=6.1e-21 Score=168.01 Aligned_cols=171 Identities=23% Similarity=0.359 Sum_probs=150.9
Q ss_pred CCCCCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCeecCCCC
Q 007417 227 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 306 (604)
Q Consensus 227 ~~~~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~g~~~ 306 (604)
.....+|||+||+..++++.|+++|-+.|+ |.++.+.++. .+...+||||++|.++++|.-|++-|+.-.+ -+
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagp--Vv~i~iPkDr-v~~~~qGygF~Ef~~eedadYAikiln~VkL----Yg 78 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGP--VVNLHIPKDR-VTQKHQGYGFAEFRTEEDADYAIKILNMVKL----YG 78 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCc--eeeeecchhh-hcccccceeEEEEechhhhHHHHHHHHHHHh----cC
Confidence 345679999999999999999999999999 9999999984 5778899999999999999999999996666 37
Q ss_pred cceeecccCCCCCCChhhhccccccccCCCCcccChhhHHhhhcccCCEEE-EEEeecCCCCCcceEEEEEeCCHHHHHH
Q 007417 307 RTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIR-IVLARNMSTAKRKDYGFIDFSTHEAAVA 385 (604)
Q Consensus 307 r~l~v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~-v~i~~d~~~g~~~G~afV~F~~~~~A~~ 385 (604)
++|+|..+.... .......+|||+||.+.+++..|.+.|+.||.+.. -.|+++..||.++||+||.|.+.+.+.+
T Consensus 79 rpIrv~kas~~~----~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ 154 (203)
T KOG0131|consen 79 RPIRVNKASAHQ----KNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDA 154 (203)
T ss_pred ceeEEEeccccc----ccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHH
Confidence 999999887222 12233478999999999999999999999998865 4789999999999999999999999999
Q ss_pred HHHHhcCCeeCCCccEEEEeeec
Q 007417 386 CINAINNKEFSDGNSKVKLRARL 408 (604)
Q Consensus 386 A~~~lng~~~~g~~~~v~~~~~~ 408 (604)
|+..|||..+..+.++|.++...
T Consensus 155 ai~s~ngq~l~nr~itv~ya~k~ 177 (203)
T KOG0131|consen 155 AIGSMNGQYLCNRPITVSYAFKK 177 (203)
T ss_pred HHHHhccchhcCCceEEEEEEec
Confidence 99999999999999999987554
No 36
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.84 E-value=3.7e-21 Score=180.87 Aligned_cols=160 Identities=29% Similarity=0.506 Sum_probs=144.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCCCC-
Q 007417 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSED- 229 (604)
Q Consensus 151 ~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~~- 229 (604)
..|||+|||..+++.+|+.+|++||+|.+|.|+++ |+||..+++..|..|+..|++..|+|..|.|+.++.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 46999999999999999999999999999999965 899999999999999999999999999999977654
Q ss_pred ---CCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCeecCCCC
Q 007417 230 ---NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 306 (604)
Q Consensus 230 ---~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~g~~~ 306 (604)
+++|+|+||.+.++.++|+..|.+||+ |.+|.|+++ |+||.|...++|..|++.|++..+ .+
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygp--viecdivkd---------y~fvh~d~~eda~~air~l~~~~~----~g 139 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGP--VIECDIVKD---------YAFVHFDRAEDAVEAIRGLDNTEF----QG 139 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCC--ceeeeeecc---------eeEEEEeeccchHHHHhccccccc----cc
Confidence 589999999999999999999999999 999999965 999999999999999999999999 68
Q ss_pred cceeecccCCCCCCChhhhcccccccc
Q 007417 307 RTVKVAFAEPLREPDPEIMAHVKTVFL 333 (604)
Q Consensus 307 r~l~v~~a~~~~~~~~~~~~~~~~l~v 333 (604)
+++.|+.+.......+.......+...
T Consensus 140 k~m~vq~stsrlrtapgmgDq~~cyrc 166 (346)
T KOG0109|consen 140 KRMHVQLSTSRLRTAPGMGDQSGCYRC 166 (346)
T ss_pred ceeeeeeeccccccCCCCCCHHHheec
Confidence 999999998877766665555444433
No 37
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.84 E-value=7.1e-21 Score=176.53 Aligned_cols=184 Identities=23% Similarity=0.428 Sum_probs=158.2
Q ss_pred cccccCCCC------CCCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHH
Q 007417 220 KRCGTAPSE------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYK 293 (604)
Q Consensus 220 ~~i~v~~~~------~~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~ 293 (604)
|.|.|+++. +.++|||+-|.+.-.+++++.+|..||. |++|.+.+.+ .+.+||++||.|.++.+|..||.
T Consensus 3 rpiqvkpadsesrg~~drklfvgml~kqq~e~dvrrlf~pfG~--~~e~tvlrg~--dg~sKGCAFVKf~s~~eAqaAI~ 78 (371)
T KOG0146|consen 3 RPIQVKPADSESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGN--IEECTVLRGP--DGNSKGCAFVKFSSHAEAQAAIN 78 (371)
T ss_pred CCccccccccccCCccchhhhhhhhcccccHHHHHHHhcccCC--cceeEEecCC--CCCCCCceEEEeccchHHHHHHH
Confidence 556666654 4689999999999999999999999999 9999999985 78999999999999999999999
Q ss_pred HhCCCCeecCCCCcceeecccCCCCC------------------------------------------------------
Q 007417 294 RLQKPDVVFGHPERTVKVAFAEPLRE------------------------------------------------------ 319 (604)
Q Consensus 294 ~l~~~~~~~g~~~r~l~v~~a~~~~~------------------------------------------------------ 319 (604)
.||+...+.+. ...+.|++++..++
T Consensus 79 aLHgSqTmpGA-SSSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~ 157 (371)
T KOG0146|consen 79 ALHGSQTMPGA-SSSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAA 157 (371)
T ss_pred HhcccccCCCC-ccceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhh
Confidence 99999988774 45677777743322
Q ss_pred -----------------------------------------------------------------------------CCh
Q 007417 320 -----------------------------------------------------------------------------PDP 322 (604)
Q Consensus 320 -----------------------------------------------------------------------------~~~ 322 (604)
+.+
T Consensus 158 ~~~~~mQ~~aA~~angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp 237 (371)
T KOG0146|consen 158 FAAAQMQQMAALNANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSP 237 (371)
T ss_pred hHHHHHHHHHHHhhcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCc
Confidence 000
Q ss_pred ------------------------------------------hhhccccccccCCCCcccChhhHHhhhcccCCEEEEEE
Q 007417 323 ------------------------------------------EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVL 360 (604)
Q Consensus 323 ------------------------------------------~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i 360 (604)
......+.|||-.||.+..+.+|..+|-+||.|+..+|
T Consensus 238 ~va~~lq~a~~g~~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKV 317 (371)
T KOG0146|consen 238 TVADPLQQAYAGVQQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKV 317 (371)
T ss_pred cccchhhhhhhhHHHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeee
Confidence 00012468999999999999999999999999999999
Q ss_pred eecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEeeec
Q 007417 361 ARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARL 408 (604)
Q Consensus 361 ~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~~~ 408 (604)
+.|+.|..+|+|+||.|+++.+|+.||.+|||..|+-++++|.++...
T Consensus 318 FvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPk 365 (371)
T KOG0146|consen 318 FVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPK 365 (371)
T ss_pred eehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCcc
Confidence 999999999999999999999999999999999999999999887443
No 38
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.83 E-value=1.5e-20 Score=176.74 Aligned_cols=149 Identities=22% Similarity=0.431 Sum_probs=135.9
Q ss_pred CcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCeecCCCCccee
Q 007417 231 DTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVK 310 (604)
Q Consensus 231 ~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~g~~~r~l~ 310 (604)
.+|||+|||.++++.+|+.+|++||. |.+|.|+++ |+||..++...+..||..|++-.+ .+..|.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygk--VlECDIvKN---------YgFVHiEdktaaedairNLhgYtL----hg~nIn 67 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGK--VLECDIVKN---------YGFVHIEDKTAAEDAIRNLHGYTL----HGVNIN 67 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCc--eEeeeeecc---------cceEEeecccccHHHHhhccccee----cceEEE
Confidence 47999999999999999999999999 999999965 999999999999999999999888 578888
Q ss_pred ecccCCCCCCChhhhccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 007417 311 VAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390 (604)
Q Consensus 311 v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~l 390 (604)
|..+..+.. .+++|+|+||.+.++.++|++.|.+||.|.+|+|+++ |+||.|.-.++|..|+..|
T Consensus 68 VeaSksKsk-------~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l 132 (346)
T KOG0109|consen 68 VEASKSKSK-------ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGL 132 (346)
T ss_pred EEeccccCC-------CccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcc
Confidence 887766522 3479999999999999999999999999999999865 9999999999999999999
Q ss_pred cCCeeCCCccEEEEeeecC
Q 007417 391 NNKEFSDGNSKVKLRARLS 409 (604)
Q Consensus 391 ng~~~~g~~~~v~~~~~~~ 409 (604)
|+++|.|++++|.+..+.-
T Consensus 133 ~~~~~~gk~m~vq~stsrl 151 (346)
T KOG0109|consen 133 DNTEFQGKRMHVQLSTSRL 151 (346)
T ss_pred cccccccceeeeeeecccc
Confidence 9999999999999876543
No 39
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.81 E-value=1e-19 Score=190.59 Aligned_cols=157 Identities=27% Similarity=0.469 Sum_probs=140.4
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCC---CCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCCC-
Q 007417 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFST---NRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE- 228 (604)
Q Consensus 153 vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~t---g~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~- 228 (604)
|||.||++++|.++|..+|...|.|.+|.|.+.+.. -.+.|||||+|.++++|++|+..|+++.|.|+.|.+..+.
T Consensus 518 lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~ 597 (725)
T KOG0110|consen 518 LFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISEN 597 (725)
T ss_pred hhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccC
Confidence 999999999999999999999999999988765432 1467999999999999999999999999999998876654
Q ss_pred --------------CCCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHH
Q 007417 229 --------------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKR 294 (604)
Q Consensus 229 --------------~~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~ 294 (604)
.-++|.|+|||+.++..+++++|..||. +..|+|... ...+..+|||||+|-+..+|..|+.+
T Consensus 598 k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGq--lksvRlPKK-~~k~a~rGF~Fv~f~t~~ea~nA~~a 674 (725)
T KOG0110|consen 598 KPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQ--LKSVRLPKK-IGKGAHRGFGFVDFLTPREAKNAFDA 674 (725)
T ss_pred ccccccccccccccccceeeeeccchHHHHHHHHHHHhcccc--eeeeccchh-hcchhhccceeeeccCcHHHHHHHHh
Confidence 1258999999999999999999999999 999999876 45677899999999999999999999
Q ss_pred hCCCCeecCCCCcceeecccCC
Q 007417 295 LQKPDVVFGHPERTVKVAFAEP 316 (604)
Q Consensus 295 l~~~~~~~g~~~r~l~v~~a~~ 316 (604)
|..++++ +|.+.+.|+..
T Consensus 675 l~STHly----GRrLVLEwA~~ 692 (725)
T KOG0110|consen 675 LGSTHLY----GRRLVLEWAKS 692 (725)
T ss_pred hccccee----chhhheehhcc
Confidence 9988884 79999999874
No 40
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.78 E-value=5.1e-19 Score=170.80 Aligned_cols=170 Identities=22% Similarity=0.431 Sum_probs=150.2
Q ss_pred CcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCeecCCCCccee
Q 007417 231 DTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVK 310 (604)
Q Consensus 231 ~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~g~~~r~l~ 310 (604)
.+|||+.|.+++.++.|+..|..||+ |.+|.+-.|+ -+++.+||+||+|.-.+.|..|++.||+..+ .+|.|+
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGP--IKSInMSWDp-~T~kHKgFAFVEYEvPEaAqLAlEqMNg~ml----GGRNiK 186 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGP--IKSINMSWDP-ATGKHKGFAFVEYEVPEAAQLALEQMNGQML----GGRNIK 186 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCC--cceeeccccc-ccccccceEEEEEeCcHHHHHHHHHhccccc----cCcccc
Confidence 47999999999999999999999999 9999999996 5999999999999999999999999999877 679998
Q ss_pred ecccCCCCCCCh------hhhccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHH
Q 007417 311 VAFAEPLREPDP------EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAV 384 (604)
Q Consensus 311 v~~a~~~~~~~~------~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~ 384 (604)
|..........+ +.....++|||..+.++++++||+..|+.||.|.+|.+.+.+.++.++||+||+|.+..+..
T Consensus 187 VgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~ 266 (544)
T KOG0124|consen 187 VGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQS 266 (544)
T ss_pred ccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchH
Confidence 886554443332 12234679999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeeCCCccEEEEeee
Q 007417 385 ACINAINNKEFSDGNSKVKLRAR 407 (604)
Q Consensus 385 ~A~~~lng~~~~g~~~~v~~~~~ 407 (604)
.||..||-..++|..++|--.+.
T Consensus 267 eAiasMNlFDLGGQyLRVGk~vT 289 (544)
T KOG0124|consen 267 EAIASMNLFDLGGQYLRVGKCVT 289 (544)
T ss_pred HHhhhcchhhcccceEecccccC
Confidence 99999999999998776654433
No 41
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.74 E-value=2.1e-17 Score=148.30 Aligned_cols=84 Identities=21% Similarity=0.444 Sum_probs=78.1
Q ss_pred hhccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEE
Q 007417 324 IMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 403 (604)
Q Consensus 324 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~ 403 (604)
.....++|||+|||+.+++++|+++|++||.|..|.|+.+..+++++|||||+|.+.++|+.||..||+..|.|+.|+|.
T Consensus 30 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~ 109 (144)
T PLN03134 30 LRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVN 109 (144)
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred Eeee
Q 007417 404 LRAR 407 (604)
Q Consensus 404 ~~~~ 407 (604)
++..
T Consensus 110 ~a~~ 113 (144)
T PLN03134 110 PAND 113 (144)
T ss_pred eCCc
Confidence 7643
No 42
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.74 E-value=4.3e-17 Score=160.21 Aligned_cols=247 Identities=19% Similarity=0.290 Sum_probs=186.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCC--CeeeCcccccC
Q 007417 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKN--PVICGKRCGTA 225 (604)
Q Consensus 148 ~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~--~~l~g~~i~v~ 225 (604)
..++.|.+||||+++||++|-.++..||+|+.+.+.+. +..|||+|.+.++|...+..... ..|.++.|.|.
T Consensus 26 ~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkG------knQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq 99 (492)
T KOG1190|consen 26 EPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKG------KNQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQ 99 (492)
T ss_pred CCcceeEeccCCccccHHHHHHhcccccceeeeeeecc------chhhhhhhcchhhhhheeecccccCccccCcceeeh
Confidence 37899999999999999999999999999999998754 33799999999999883322111 12233332221
Q ss_pred CC----------------------------------C----------C--CCcceecccCCCCcHHHHHHHHHhcCCcce
Q 007417 226 PS----------------------------------E----------D--NDTLFVGNICNTWTKEAIKQKLKDYGVEGV 259 (604)
Q Consensus 226 ~~----------------------------------~----------~--~~~l~v~nlp~~~te~~l~~~f~~~G~~~v 259 (604)
.+ . + --+++|.++-+.++-+.|.++|++||. |
T Consensus 100 ~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~--V 177 (492)
T KOG1190|consen 100 YSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGF--V 177 (492)
T ss_pred hhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcce--e
Confidence 10 0 0 124567889999999999999999998 8
Q ss_pred eEEEEeccccCCCCcccE-EEEEecCHHHHHHHHHHhCCCCeecCCCCcceeecccCC----------CCC--------C
Q 007417 260 ENINLVSDIQHEGLSRGF-AFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEP----------LRE--------P 320 (604)
Q Consensus 260 ~~i~i~~~~~~~g~skG~-afV~f~~~e~A~~Al~~l~~~~~~~g~~~r~l~v~~a~~----------~~~--------~ 320 (604)
..|.-+.. +.+| |+|+|.+.+.|..|...|++..+..++ ..++++++.- +.. .
T Consensus 178 lKIiTF~K------nn~FQALvQy~d~~sAq~AK~aLdGqnIyngc--CtLrId~Sklt~LnvKynndkSRDyTnp~LP~ 249 (492)
T KOG1190|consen 178 LKIITFTK------NNGFQALVQYTDAVSAQAAKLALDGQNIYNGC--CTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPV 249 (492)
T ss_pred EEEEEEec------ccchhhhhhccchhhHHHHHHhccCCcccCce--eEEEeehhhcccceeeccccccccccCCCCCC
Confidence 77765532 3455 999999999999999999999998765 5555555421 000 0
Q ss_pred C-----------------------h---------------hhhc--cccccccCCCCc-ccChhhHHhhhcccCCEEEEE
Q 007417 321 D-----------------------P---------------EIMA--HVKTVFLDGVPP-HWKENQIRDQIKGYGDVIRIV 359 (604)
Q Consensus 321 ~-----------------------~---------------~~~~--~~~~l~v~nLp~-~~t~~~l~~~F~~~G~v~~v~ 359 (604)
. + .... ....|.|.||.. .+|.+.|..+|.-||.|.+|+
T Consensus 250 gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVk 329 (492)
T KOG1190|consen 250 GDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVK 329 (492)
T ss_pred CccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEE
Confidence 0 0 0000 135688888866 589999999999999999999
Q ss_pred EeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEeeecCCCCCCC
Q 007417 360 LARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKT 415 (604)
Q Consensus 360 i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~~~~~~~~~~ 415 (604)
|++++. --|+|.|.+...|.-|+..|+|..+.|+.|+|.+.....-..++.
T Consensus 330 il~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~e 380 (492)
T KOG1190|consen 330 ILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPRE 380 (492)
T ss_pred eeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCCC
Confidence 998853 359999999999999999999999999999999876665555543
No 43
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.70 E-value=6.4e-16 Score=156.20 Aligned_cols=162 Identities=20% Similarity=0.262 Sum_probs=124.2
Q ss_pred CCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCeecCCCCcce
Q 007417 230 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTV 309 (604)
Q Consensus 230 ~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~g~~~r~l 309 (604)
..-|.+++|||++|+++|.++|+.++ |+++.+.+. +|+..|-|||+|.+.+++.+|+++-.. .+ ..|.|
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~---I~~~~~~r~---~Gr~sGeA~Ve~~seedv~~AlkkdR~-~m----g~RYI 78 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCG---IENLEIPRR---NGRPSGEAYVEFTSEEDVEKALKKDRE-SM----GHRYI 78 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCc---eeEEEEecc---CCCcCcceEEEeechHHHHHHHHhhHH-Hh----CCceE
Confidence 34577899999999999999999998 888777765 799999999999999999999985322 22 24666
Q ss_pred eecccCCCCC------CChhhhccccccccCCCCcccChhhHHhhhcccCCEEE-EEEeecCCCCCcceEEEEEeCCHHH
Q 007417 310 KVAFAEPLRE------PDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIR-IVLARNMSTAKRKDYGFIDFSTHEA 382 (604)
Q Consensus 310 ~v~~a~~~~~------~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~-v~i~~d~~~g~~~G~afV~F~~~~~ 382 (604)
.|-.+.+... ..+........|.+++||+.||+++|.+||+..-.|.. |.++.+ ..+++.|-|||+|++.+.
T Consensus 79 EVf~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rgR~tGEAfVqF~sqe~ 157 (510)
T KOG4211|consen 79 EVFTAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRGRPTGEAFVQFESQES 157 (510)
T ss_pred EEEccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCCCcccceEEEecCHHH
Confidence 6655533211 11111134568999999999999999999998865555 444555 457799999999999999
Q ss_pred HHHHHHHhcCCeeCCCccEEEE
Q 007417 383 AVACINAINNKEFSDGNSKVKL 404 (604)
Q Consensus 383 A~~A~~~lng~~~~g~~~~v~~ 404 (604)
|+.||.. |...|+.|.|.|--
T Consensus 158 ae~Al~r-hre~iGhRYIEvF~ 178 (510)
T KOG4211|consen 158 AEIALGR-HRENIGHRYIEVFR 178 (510)
T ss_pred HHHHHHH-HHHhhccceEEeeh
Confidence 9999975 66778888777643
No 44
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.70 E-value=2.5e-17 Score=168.51 Aligned_cols=174 Identities=18% Similarity=0.338 Sum_probs=147.8
Q ss_pred CCCCCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCeecCCCC
Q 007417 227 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 306 (604)
Q Consensus 227 ~~~~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~g~~~ 306 (604)
....+++|+--|+..++..+|.++|+.+|. |.+|+++.+ ..+++++|.+||+|.+.+....|+ .|.+..++ +
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gk--VrdVriI~D-r~s~rskgi~Yvef~D~~sVp~ai-aLsGqrll----g 247 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGK--VRDVRIIGD-RNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLL----G 247 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcC--cceeEeecc-ccchhhcceeEEEEecccchhhHh-hhcCCccc----C
Confidence 345688999999999999999999999999 999999999 468999999999999999999988 57887774 5
Q ss_pred cceeecccCCCCCCChh---------hhccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEe
Q 007417 307 RTVKVAFAEPLREPDPE---------IMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDF 377 (604)
Q Consensus 307 r~l~v~~a~~~~~~~~~---------~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F 377 (604)
.+|.|+.....+..... ...+..+|+|+||.+.+++++|+..|++||.|..|.+++|..||+++||+||+|
T Consensus 248 ~pv~vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f 327 (549)
T KOG0147|consen 248 VPVIVQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITF 327 (549)
T ss_pred ceeEecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEE
Confidence 77877765433221111 112234499999999999999999999999999999999988999999999999
Q ss_pred CCHHHHHHHHHHhcCCeeCCCccEEEEeeec
Q 007417 378 STHEAAVACINAINNKEFSDGNSKVKLRARL 408 (604)
Q Consensus 378 ~~~~~A~~A~~~lng~~~~g~~~~v~~~~~~ 408 (604)
.+.++|.+|++.|||.+|.|+.|+|.+....
T Consensus 328 ~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 328 VNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred ecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 9999999999999999999999998764433
No 45
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.67 E-value=6e-16 Score=160.87 Aligned_cols=244 Identities=18% Similarity=0.347 Sum_probs=187.2
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhcc-----------C-CeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCC
Q 007417 147 IKKEHEIFIGGLDRDATQEDVRKVFERI-----------G-EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKN 214 (604)
Q Consensus 147 ~~~~~~vfV~nLp~~~te~dL~~~F~~~-----------G-~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~ 214 (604)
....+.++|+++|+.++++.+..+|..- | .|..|.|. ..+.||||+|.+.+.|..|+. +++
T Consensus 172 t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n------~~~nfa~ie~~s~~~at~~~~-~~~ 244 (500)
T KOG0120|consen 172 TRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLN------LEKNFAFIEFRSISEATEAMA-LDG 244 (500)
T ss_pred hhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeec------ccccceeEEecCCCchhhhhc-ccc
Confidence 3456899999999999999999999774 3 36666663 557899999999999999997 566
Q ss_pred CeeeCcccccCCC-----------------------------CCCCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEe
Q 007417 215 PVICGKRCGTAPS-----------------------------EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLV 265 (604)
Q Consensus 215 ~~l~g~~i~v~~~-----------------------------~~~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~ 265 (604)
..+.|..+.+... .....+||++||..+++.+++++...+|. +....++
T Consensus 245 ~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~--lk~f~lv 322 (500)
T KOG0120|consen 245 IIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGP--LKAFRLV 322 (500)
T ss_pred hhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhccc--chhheee
Confidence 6666665443211 12468999999999999999999999999 9999999
Q ss_pred ccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCeecCCCCcceeecccCCCCCCC-------------------hhhhc
Q 007417 266 SDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPD-------------------PEIMA 326 (604)
Q Consensus 266 ~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~g~~~r~l~v~~a~~~~~~~-------------------~~~~~ 326 (604)
.+. .++.++||||.+|.+......|++.||+..+ .+..+.|+.|-+..... +....
T Consensus 323 ~d~-~~g~skg~af~ey~dpsvtd~A~agLnGm~l----gd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~ 397 (500)
T KOG0120|consen 323 KDS-ATGNSKGFAFCEYCDPSVTDQAIAGLNGMQL----GDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGI 397 (500)
T ss_pred ccc-ccccccceeeeeeeCCcchhhhhcccchhhh----cCceeEeehhhccchhccccCCccccccccchhhhcccCCC
Confidence 985 4689999999999999999999999999988 34667776664322111 01112
Q ss_pred cccccccCCC--CcccC--------hhhHHhhhcccCCEEEEEEeecCC---CCCcceEEEEEeCCHHHHHHHHHHhcCC
Q 007417 327 HVKTVFLDGV--PPHWK--------ENQIRDQIKGYGDVIRIVLARNMS---TAKRKDYGFIDFSTHEAAVACINAINNK 393 (604)
Q Consensus 327 ~~~~l~v~nL--p~~~t--------~~~l~~~F~~~G~v~~v~i~~d~~---~g~~~G~afV~F~~~~~A~~A~~~lng~ 393 (604)
.+..|++.|+ |..+. -++++..|++||.|..|.|++... -.-..|-.||+|.+.+++++|+++|+|+
T Consensus 398 ~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~Gr 477 (500)
T KOG0120|consen 398 PTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGR 477 (500)
T ss_pred cchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCc
Confidence 2344555554 11111 156777889999999999988722 2334677999999999999999999999
Q ss_pred eeCCCccEEEE
Q 007417 394 EFSDGNSKVKL 404 (604)
Q Consensus 394 ~~~g~~~~v~~ 404 (604)
.|.+|.|.+.+
T Consensus 478 KF~nRtVvtsY 488 (500)
T KOG0120|consen 478 KFANRTVVASY 488 (500)
T ss_pred eeCCcEEEEEe
Confidence 99999988776
No 46
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.67 E-value=3.3e-15 Score=145.22 Aligned_cols=242 Identities=19% Similarity=0.221 Sum_probs=192.2
Q ss_pred hhccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhc--CCCeeeCcc
Q 007417 144 DRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM--KNPVICGKR 221 (604)
Q Consensus 144 ~~~~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l--~~~~l~g~~ 221 (604)
..+...+-.|.|++|-..+++.||.+.++.||.|..|.++.. +..|.|+|.+.+.|..|+.-. +...+.|..
T Consensus 25 phk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~------~r~alvefedi~~akn~Vnfaa~n~i~i~gq~ 98 (494)
T KOG1456|consen 25 PHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH------KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQ 98 (494)
T ss_pred CCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccc------cceeeeeeccccchhhheehhccCcccccCch
Confidence 445667889999999999999999999999999999988654 557999999999999998642 333455544
Q ss_pred cccC-------------CCCCCCccee--cccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHH
Q 007417 222 CGTA-------------PSEDNDTLFV--GNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHV 286 (604)
Q Consensus 222 i~v~-------------~~~~~~~l~v--~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e 286 (604)
..+. .+..+..|.+ -|--+.+|-+.|.++...+|. |..|.|++. + ---|.|+|.+.+
T Consensus 99 Al~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~Gk--VlRIvIfkk---n---gVQAmVEFdsv~ 170 (494)
T KOG1456|consen 99 ALFNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGK--VLRIVIFKK---N---GVQAMVEFDSVE 170 (494)
T ss_pred hhcccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCc--eEEEEEEec---c---ceeeEEeechhH
Confidence 3322 2223444444 455568999999999999999 999999875 2 235999999999
Q ss_pred HHHHHHHHhCCCCeecCCCCcceeecccCCCCCC----------------------------------------------
Q 007417 287 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREP---------------------------------------------- 320 (604)
Q Consensus 287 ~A~~Al~~l~~~~~~~g~~~r~l~v~~a~~~~~~---------------------------------------------- 320 (604)
.|++|.++||+.+|..++ .+|+|.+|.|.+..
T Consensus 171 ~AqrAk~alNGADIYsGC--CTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~ 248 (494)
T KOG1456|consen 171 VAQRAKAALNGADIYSGC--CTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGG 248 (494)
T ss_pred HHHHHHhhcccccccccc--eeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCC
Confidence 999999999999999886 78888888654220
Q ss_pred -------------------------------ChhhhccccccccCCCCc-ccChhhHHhhhcccCCEEEEEEeecCCCCC
Q 007417 321 -------------------------------DPEIMAHVKTVFLDGVPP-HWKENQIRDQIKGYGDVIRIVLARNMSTAK 368 (604)
Q Consensus 321 -------------------------------~~~~~~~~~~l~v~nLp~-~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~ 368 (604)
.+........+.|-+|.. .++.+.|..+|..||.|.+|++++.+
T Consensus 249 h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk---- 324 (494)
T KOG1456|consen 249 HSGYYSGDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK---- 324 (494)
T ss_pred CCCCcccccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc----
Confidence 000112235688888876 46789999999999999999999875
Q ss_pred cceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEee
Q 007417 369 RKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 369 ~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
.|.|.|++.+..+.++|+..||+..+.|.+|.|.+..
T Consensus 325 -~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~Sk 361 (494)
T KOG1456|consen 325 -PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSK 361 (494)
T ss_pred -cceeEEEcCcHHHHHHHHHHhccCccccceEEEeecc
Confidence 5789999999999999999999999999888887653
No 47
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=2.7e-15 Score=132.43 Aligned_cols=164 Identities=21% Similarity=0.339 Sum_probs=136.0
Q ss_pred CCCCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCeecCCCCc
Q 007417 228 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 307 (604)
Q Consensus 228 ~~~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~g~~~r 307 (604)
....+|||+|||..+.+.+|.++|.+||. |..|.|... ...-.||||+|++..+|+.||..-++-++ .+.
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~--i~~ieLK~r----~g~ppfafVeFEd~RDAeDAiygRdGYdy----dg~ 73 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGR--IREIELKNR----PGPPPFAFVEFEDPRDAEDAIYGRDGYDY----DGC 73 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcc--eEEEEeccC----CCCCCeeEEEecCccchhhhhhccccccc----Ccc
Confidence 34678999999999999999999999999 999988643 24467999999999999999998888888 678
Q ss_pred ceeecccCCCCC---------------------CChhhhccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCC
Q 007417 308 TVKVAFAEPLRE---------------------PDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMST 366 (604)
Q Consensus 308 ~l~v~~a~~~~~---------------------~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~ 366 (604)
.|+|.++..-.. .-+....+..+|.|.+||.+.+|++|+++..+.|.|-...+.+|
T Consensus 74 rLRVEfprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD--- 150 (241)
T KOG0105|consen 74 RLRVEFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD--- 150 (241)
T ss_pred eEEEEeccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc---
Confidence 999998864422 11223344578999999999999999999999999998888776
Q ss_pred CCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEeeec
Q 007417 367 AKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARL 408 (604)
Q Consensus 367 g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~~~ 408 (604)
|.+.|+|...++++-||.+|..+.+.--...+-+.+..
T Consensus 151 ----g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv~~ 188 (241)
T KOG0105|consen 151 ----GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRVRG 188 (241)
T ss_pred ----cceeeeeeehhhHHHHHHhhccccccCcCcEeeEEecc
Confidence 48999999999999999999998887655555544443
No 48
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=3.8e-16 Score=145.30 Aligned_cols=164 Identities=22% Similarity=0.434 Sum_probs=138.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCe-eeCc------
Q 007417 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPV-ICGK------ 220 (604)
Q Consensus 148 ~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~-l~g~------ 220 (604)
.+.++|||+.|...-.|+|++.+|..||.|.+|.+.+.. .|.+||+|||+|.+..+|+.||..|++.. +-|-
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVV 95 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVV 95 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEE
Confidence 367899999999999999999999999999999999885 58999999999999999999999987642 1110
Q ss_pred ---------ccc--------------------------------------------------------------------
Q 007417 221 ---------RCG-------------------------------------------------------------------- 223 (604)
Q Consensus 221 ---------~i~-------------------------------------------------------------------- 223 (604)
.++
T Consensus 96 K~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~ 175 (371)
T KOG0146|consen 96 KFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLA 175 (371)
T ss_pred EeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccc
Confidence 000
Q ss_pred ---cCCC-------------------------------------------------------------------------
Q 007417 224 ---TAPS------------------------------------------------------------------------- 227 (604)
Q Consensus 224 ---v~~~------------------------------------------------------------------------- 227 (604)
|.++
T Consensus 176 A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~A 255 (371)
T KOG0146|consen 176 AAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAA 255 (371)
T ss_pred cCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhh
Confidence 0000
Q ss_pred ---------------------------CCCCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEE
Q 007417 228 ---------------------------EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFV 280 (604)
Q Consensus 228 ---------------------------~~~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV 280 (604)
.+..+|||-.||.+.++.+|.+.|..||. |.+.+++.| ..+..+|+|+||
T Consensus 256 aypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGh--ivSaKVFvD-RATNQSKCFGFV 332 (371)
T KOG0146|consen 256 AYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGH--IVSAKVFVD-RATNQSKCFGFV 332 (371)
T ss_pred hcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccc--eeeeeeeeh-hccccccceeeE
Confidence 01468999999999999999999999999 999999888 468999999999
Q ss_pred EecCHHHHHHHHHHhCCCCeecCCCCcceeecccCCCCC
Q 007417 281 MFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLRE 319 (604)
Q Consensus 281 ~f~~~e~A~~Al~~l~~~~~~~g~~~r~l~v~~a~~~~~ 319 (604)
.|.+...+..||..||+-.| .-++++|....|+..
T Consensus 333 SfDNp~SaQaAIqAMNGFQI----GMKRLKVQLKRPkda 367 (371)
T KOG0146|consen 333 SFDNPASAQAAIQAMNGFQI----GMKRLKVQLKRPKDA 367 (371)
T ss_pred ecCCchhHHHHHHHhcchhh----hhhhhhhhhcCcccc
Confidence 99999999999999999888 457888888777653
No 49
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=1.3e-15 Score=134.49 Aligned_cols=140 Identities=19% Similarity=0.313 Sum_probs=122.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCC
Q 007417 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (604)
Q Consensus 148 ~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (604)
..+++|||+|||.++.+.+|+.+|-+||.|..|.|.. .-..-.||||+|+++.+|+.||..-++..+.|..|+|+.+
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~---r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKN---RPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEecc---CCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 4679999999999999999999999999999999843 2356789999999999999999998999999999998765
Q ss_pred CC--------------------------------CCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcc
Q 007417 228 ED--------------------------------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSR 275 (604)
Q Consensus 228 ~~--------------------------------~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~sk 275 (604)
.. ..+|.|.+||.+.+|++|++++.+.|. |--..+.++
T Consensus 81 rggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGd--vCfadv~rD-------- 150 (241)
T KOG0105|consen 81 RGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGD--VCFADVQRD-------- 150 (241)
T ss_pred cCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCC--eeeeeeecc--------
Confidence 32 347899999999999999999999998 766666665
Q ss_pred cEEEEEecCHHHHHHHHHHhCCCCe
Q 007417 276 GFAFVMFSCHVDAMAAYKRLQKPDV 300 (604)
Q Consensus 276 G~afV~f~~~e~A~~Al~~l~~~~~ 300 (604)
|.+.|+|...++.+-|+.+|..+.+
T Consensus 151 g~GvV~~~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 151 GVGVVEYLRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred cceeeeeeehhhHHHHHHhhccccc
Confidence 5899999999999999999886655
No 50
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.63 E-value=1e-15 Score=137.40 Aligned_cols=81 Identities=27% Similarity=0.604 Sum_probs=77.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCCC
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~ 228 (604)
..++|||+|||+++|+++|+++|++||.|.+|+|++++.|++++|||||+|.+.++|++||+.|++..|.|+.|+|.++.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 57799999999999999999999999999999999999999999999999999999999999999999999999987765
Q ss_pred C
Q 007417 229 D 229 (604)
Q Consensus 229 ~ 229 (604)
.
T Consensus 113 ~ 113 (144)
T PLN03134 113 D 113 (144)
T ss_pred c
Confidence 4
No 51
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.61 E-value=1.1e-14 Score=134.21 Aligned_cols=206 Identities=16% Similarity=0.312 Sum_probs=143.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHH----HhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccc
Q 007417 148 KKEHEIFIGGLDRDATQEDVRK----VFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCG 223 (604)
Q Consensus 148 ~~~~~vfV~nLp~~~te~dL~~----~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~ 223 (604)
..+.||||.||+..+..++|+. +|++||.|.+|... .|.+.+|-|||.|.+.+.|..|+.+|+|..+.|+.++
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~---kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF---KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec---CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 3455999999999999999998 99999999999885 4578999999999999999999999999999999999
Q ss_pred cCCCCCCCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCeecC
Q 007417 224 TAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFG 303 (604)
Q Consensus 224 v~~~~~~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~g 303 (604)
+..+.....++..--+..+..+. + .....+...+ ......|..+. ++...+
T Consensus 84 iqyA~s~sdii~~~~~~~v~~~~------k-----~~~~~~~~~~-~~~~~ng~~~~--------------~~~~~~--- 134 (221)
T KOG4206|consen 84 IQYAKSDSDIIAQAPGTFVEKEK------K-----INGEILARIK-QPLDTNGHFYN--------------MNRMNL--- 134 (221)
T ss_pred eecccCccchhhccCceeccccC------c-----cccccccccC-Ccccccccccc--------------cccccC---
Confidence 99988766655432211111000 0 0000000000 00000000000 111111
Q ss_pred CCCcceeecccCCCCCCChhhhccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHH
Q 007417 304 HPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 383 (604)
Q Consensus 304 ~~~r~l~v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A 383 (604)
..+. . .....+...||+.|||..++.+.|..+|.+|.....|+++... .+.|||+|.+...|
T Consensus 135 ----------p~p~--~-~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a 196 (221)
T KOG4206|consen 135 ----------PPPF--L-AQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQA 196 (221)
T ss_pred ----------CCCc--c-ccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhh
Confidence 0000 0 1123345789999999999999999999999999999988653 67999999999999
Q ss_pred HHHHHHhcCCeeC-CCccEEE
Q 007417 384 VACINAINNKEFS-DGNSKVK 403 (604)
Q Consensus 384 ~~A~~~lng~~~~-g~~~~v~ 403 (604)
..|..++.+..|. ...+.|.
T Consensus 197 ~~a~~~lq~~~it~~~~m~i~ 217 (221)
T KOG4206|consen 197 SAAQQALQGFKITKKNTMQIT 217 (221)
T ss_pred HHHhhhhccceeccCceEEec
Confidence 9999999987776 4444443
No 52
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.60 E-value=3.9e-14 Score=139.61 Aligned_cols=236 Identities=17% Similarity=0.272 Sum_probs=182.1
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccc--cCCC-
Q 007417 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCG--TAPS- 227 (604)
Q Consensus 151 ~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~--v~~~- 227 (604)
-+++|.|+-+.+|-+-|..+|++||.|..|.-... .+.=.|.|+|.+.+.|+.|...|++..|..-.|. |..+
T Consensus 151 Lr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~K----nn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sk 226 (492)
T KOG1190|consen 151 LRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTK----NNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSK 226 (492)
T ss_pred EEEEeccceeeeEHHHHHHHHhhcceeEEEEEEec----ccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhh
Confidence 47899999999999999999999999987765432 2333499999999999999999988766443221 1000
Q ss_pred -----------------------C---------------------------------------------CCCcceecccC
Q 007417 228 -----------------------E---------------------------------------------DNDTLFVGNIC 239 (604)
Q Consensus 228 -----------------------~---------------------------------------------~~~~l~v~nlp 239 (604)
. .+..|.|.||.
T Consensus 227 lt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln 306 (492)
T KOG1190|consen 227 LTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLN 306 (492)
T ss_pred cccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCc
Confidence 0 02456667775
Q ss_pred C-CCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCeecCCCCcceeecccCCCC
Q 007417 240 N-TWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318 (604)
Q Consensus 240 ~-~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~g~~~r~l~v~~a~~~~ 318 (604)
. .+|.+.|-.+|.-||. |..|+|+.+. +-.|+|++.+...|.-|+..|++..+. ++.|+|.++....
T Consensus 307 ~~~VT~d~LftlFgvYGd--VqRVkil~nk------kd~ALIQmsd~~qAqLA~~hL~g~~l~----gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 307 EEAVTPDVLFTLFGVYGD--VQRVKILYNK------KDNALIQMSDGQQAQLAMEHLEGHKLY----GKKLRVTLSKHTN 374 (492)
T ss_pred hhccchhHHHHHHhhhcc--eEEEEeeecC------CcceeeeecchhHHHHHHHHhhcceec----CceEEEeeccCcc
Confidence 4 5899999999999999 9999999874 357999999999999999999999884 6888888774221
Q ss_pred CCCh------------------------------hhhccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCC
Q 007417 319 EPDP------------------------------EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAK 368 (604)
Q Consensus 319 ~~~~------------------------------~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~ 368 (604)
.+.+ ....++.+|++.|+|.++++++|+.+|...|-..+..... ++
T Consensus 375 vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff----~k 450 (492)
T KOG1190|consen 375 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF----QK 450 (492)
T ss_pred ccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeec----CC
Confidence 1000 1123456899999999999999999999988665544432 33
Q ss_pred cceEEEEEeCCHHHHHHHHHHhcCCeeCCC-ccEEEEee
Q 007417 369 RKDYGFIDFSTHEAAVACINAINNKEFSDG-NSKVKLRA 406 (604)
Q Consensus 369 ~~G~afV~F~~~~~A~~A~~~lng~~~~g~-~~~v~~~~ 406 (604)
.+-++++.+.+.++|..|+..|+++.++.. .++|.+..
T Consensus 451 d~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSk 489 (492)
T KOG1190|consen 451 DRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSK 489 (492)
T ss_pred CcceeecccCChhHhhhhccccccccCCCCceEEEEeec
Confidence 466999999999999999999999988876 77777653
No 53
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.56 E-value=5.2e-15 Score=151.82 Aligned_cols=70 Identities=23% Similarity=0.536 Sum_probs=66.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCc
Q 007417 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGK 220 (604)
Q Consensus 151 ~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~ 220 (604)
.+|||+|||+++|+++|+++|++||.|+.|+|++++.|++++|||||+|.+.++|++||+.|++..|.+.
T Consensus 194 ~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~ 263 (346)
T TIGR01659 194 TNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGG 263 (346)
T ss_pred ceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCC
Confidence 4699999999999999999999999999999999999999999999999999999999999999887663
No 54
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.55 E-value=2e-14 Score=140.27 Aligned_cols=251 Identities=18% Similarity=0.213 Sum_probs=178.2
Q ss_pred hhccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccc
Q 007417 144 DRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCG 223 (604)
Q Consensus 144 ~~~~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~ 223 (604)
.....++..|..++|||..++.+|..||+-.-.+.-.+.+.....|+..|.|.|.|.+.|.-..|++. +...+.++.|.
T Consensus 54 ~~~~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryie 132 (508)
T KOG1365|consen 54 NHSADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIE 132 (508)
T ss_pred ccccCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhccCCcee
Confidence 33445677889999999999999999998764333333333335588899999999999999999986 44455566555
Q ss_pred cCCCC----------------------CCCcceecccCCCCcHHHHHHHHHhcCC--cceeEEEEeccccCCCCcccEEE
Q 007417 224 TAPSE----------------------DNDTLFVGNICNTWTKEAIKQKLKDYGV--EGVENINLVSDIQHEGLSRGFAF 279 (604)
Q Consensus 224 v~~~~----------------------~~~~l~v~nlp~~~te~~l~~~f~~~G~--~~v~~i~i~~~~~~~g~skG~af 279 (604)
|-.+. +.-.|.+++||+++|+.++.++|...-. ..+..|..+..+ .|+..|-||
T Consensus 133 vYka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp--dgrpTGdAF 210 (508)
T KOG1365|consen 133 VYKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP--DGRPTGDAF 210 (508)
T ss_pred eeccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC--CCCcccceE
Confidence 42211 1235667999999999999999973321 125566666653 789999999
Q ss_pred EEecCHHHHHHHHHHhCCCCeecCCCCcceeeccc----------------------CCCCCCCh----hhhcccccccc
Q 007417 280 VMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFA----------------------EPLREPDP----EIMAHVKTVFL 333 (604)
Q Consensus 280 V~f~~~e~A~~Al~~l~~~~~~~g~~~r~l~v~~a----------------------~~~~~~~~----~~~~~~~~l~v 333 (604)
|.|..+++|..|+.+..+.. ..|.|.+-.+ .+.....+ .......+|.+
T Consensus 211 vlfa~ee~aq~aL~khrq~i-----GqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRL 285 (508)
T KOG1365|consen 211 VLFACEEDAQFALRKHRQNI-----GQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRL 285 (508)
T ss_pred EEecCHHHHHHHHHHHHHHH-----hHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEe
Confidence 99999999999997543221 0122221111 00000001 11122568999
Q ss_pred CCCCcccChhhHHhhhcccCC-EEE--EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEE
Q 007417 334 DGVPPHWKENQIRDQIKGYGD-VIR--IVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 403 (604)
Q Consensus 334 ~nLp~~~t~~~l~~~F~~~G~-v~~--v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~ 403 (604)
++||+.++.++|-+||..|-. |.. |.++.+ ..|++.|-|||+|.+.++|.+|..+.+++....|.|.|-
T Consensus 286 RGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvf 357 (508)
T KOG1365|consen 286 RGLPYEATVEDILDFLGDFATDIRFQGVHMVLN-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVF 357 (508)
T ss_pred cCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEe
Confidence 999999999999999998853 333 667666 458999999999999999999999999888878877664
No 55
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.50 E-value=3.7e-14 Score=130.83 Aligned_cols=88 Identities=20% Similarity=0.411 Sum_probs=79.3
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEee
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
+.++|||++|+|.+..+.|+.+|++||+|.++.|+.|+.++++|||+||+|.+.++|.+|++..| -.|+||+..|.++.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccccccccchhh
Confidence 34799999999999999999999999999999999999999999999999999999999998655 68999999999987
Q ss_pred ecCCCCCCC
Q 007417 407 RLSNPMPKT 415 (604)
Q Consensus 407 ~~~~~~~~~ 415 (604)
.-.++++..
T Consensus 90 lg~~pR~~~ 98 (247)
T KOG0149|consen 90 LGGKPRPVP 98 (247)
T ss_pred hcCccCCCC
Confidence 655555543
No 56
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.50 E-value=5.5e-14 Score=110.26 Aligned_cols=70 Identities=34% Similarity=0.743 Sum_probs=66.7
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccc
Q 007417 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCG 223 (604)
Q Consensus 153 vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~ 223 (604)
|||+|||.++|+++|+++|++||.|..+.++.+ .+++++++|||+|.+.++|.+|++.|++..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999988 6789999999999999999999999999999998774
No 57
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.49 E-value=5.4e-14 Score=129.76 Aligned_cols=77 Identities=36% Similarity=0.684 Sum_probs=70.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCC
Q 007417 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (604)
Q Consensus 150 ~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (604)
-.+|||++|+|.++.+.|+++|++||+|+++.|+.|+.|+++|||+||+|++.++|.+|++. .+.+|.||+..+..+
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLA 88 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchh
Confidence 46899999999999999999999999999999999999999999999999999999999986 456899997765443
No 58
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.48 E-value=4.4e-13 Score=129.89 Aligned_cols=197 Identities=18% Similarity=0.311 Sum_probs=137.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeE--------EEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCc
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVI--------EVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGK 220 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~~G~V~--------~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~ 220 (604)
-+..|||.|||.++|-+++.++|++||.|. .|+|.++.. |+.+|-|.+.|...+++..|+..|+...|.|+
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 456799999999999999999999999774 388888854 99999999999999999999999999999999
Q ss_pred ccccCCCCCCCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCe
Q 007417 221 RCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV 300 (604)
Q Consensus 221 ~i~v~~~~~~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~ 300 (604)
.|+|..+. |+.-|.-.+ +++.++-+ .-.+-+..++...+
T Consensus 212 ~~rVerAk----------------------fq~Kge~~~-----------~~k~k~k~--------~~~kk~~k~q~k~~ 250 (382)
T KOG1548|consen 212 KLRVERAK----------------------FQMKGEYDA-----------SKKEKGKC--------KDKKKLKKQQQKLL 250 (382)
T ss_pred EEEEehhh----------------------hhhccCcCc-----------cccccccc--------ccHHHHHHHHHhhc
Confidence 99987763 222221000 00000000 00111111111111
Q ss_pred ecCCCCcceeecccCCCCCCChhhhccccccccCCCCc----ccC-------hhhHHhhhcccCCEEEEEEeecCCCCCc
Q 007417 301 VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPP----HWK-------ENQIRDQIKGYGDVIRIVLARNMSTAKR 369 (604)
Q Consensus 301 ~~g~~~r~l~v~~a~~~~~~~~~~~~~~~~l~v~nLp~----~~t-------~~~l~~~F~~~G~v~~v~i~~d~~~g~~ 369 (604)
- .++- . ..+......++|.|+||=. ..+ .++|++-+.+||.|..|.|.-. .+
T Consensus 251 d----w~pd--------~-~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~----hP 313 (382)
T KOG1548|consen 251 D----WRPD--------R-DDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR----HP 313 (382)
T ss_pred c----cCCC--------c-cccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc----CC
Confidence 0 0110 0 1111122345777777722 122 3677888999999999988643 36
Q ss_pred ceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEE
Q 007417 370 KDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (604)
Q Consensus 370 ~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~ 404 (604)
.|.+-|.|.+.++|..||+.|+|+.|.||.|...+
T Consensus 314 dGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i 348 (382)
T KOG1548|consen 314 DGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASI 348 (382)
T ss_pred CceeEEEeCChHHHHHHHHHhcCeeecceEEEEEE
Confidence 78999999999999999999999999999988876
No 59
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.47 E-value=7.6e-13 Score=131.35 Aligned_cols=170 Identities=19% Similarity=0.283 Sum_probs=139.7
Q ss_pred CCCCCcceecccCCCCcHHHHHHHHHh-cCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCeecCCC
Q 007417 227 SEDNDTLFVGNICNTWTKEAIKQKLKD-YGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 305 (604)
Q Consensus 227 ~~~~~~l~v~nlp~~~te~~l~~~f~~-~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~g~~ 305 (604)
+...+.+||.|||+++.|++|+++|.. .|+ |+.|.++.|. +++++|+|.|+|++++.+++|++.|++..+ .
T Consensus 41 ~~r~R~vfItNIpyd~rWqdLKdLvrekvGe--v~yveLl~D~--~GK~rGcavVEFk~~E~~qKa~E~lnk~~~----~ 112 (608)
T KOG4212|consen 41 AARDRSVFITNIPYDYRWQDLKDLVREKVGE--VEYVELLFDE--SGKARGCAVVEFKDPENVQKALEKLNKYEV----N 112 (608)
T ss_pred ccccceEEEecCcchhhhHhHHHHHHHhcCc--eEeeeeeccc--CCCcCCceEEEeeCHHHHHHHHHHhhhccc----c
Confidence 344567999999999999999999965 577 9999999984 899999999999999999999999999888 5
Q ss_pred CcceeecccCCCCC---------------------------------------------C-Ch-----------------
Q 007417 306 ERTVKVAFAEPLRE---------------------------------------------P-DP----------------- 322 (604)
Q Consensus 306 ~r~l~v~~a~~~~~---------------------------------------------~-~~----------------- 322 (604)
+|+|.|+....... . .+
T Consensus 113 GR~l~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~ 192 (608)
T KOG4212|consen 113 GRELVVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSS 192 (608)
T ss_pred CceEEEeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccch
Confidence 77777764321000 0 00
Q ss_pred ----------------h-hhccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHH
Q 007417 323 ----------------E-IMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVA 385 (604)
Q Consensus 323 ----------------~-~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~ 385 (604)
. ..+...++||.||.+.+....|++.|.-.|.|+.|.+-.+++ |.++|||.++|..+-.|..
T Consensus 193 ~~~lfgl~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKe-G~s~G~~vi~y~hpveavq 271 (608)
T KOG4212|consen 193 NYNLFGLSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKE-GNSRGFAVIEYDHPVEAVQ 271 (608)
T ss_pred hhhcccchhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccc-cccCCeeEEEecchHHHHH
Confidence 0 001235789999999999999999999999999999988876 5899999999999999999
Q ss_pred HHHHhcCCeeCCCccEEEEe
Q 007417 386 CINAINNKEFSDGNSKVKLR 405 (604)
Q Consensus 386 A~~~lng~~~~g~~~~v~~~ 405 (604)
||..|++.-+..++..+.+.
T Consensus 272 aIsml~~~g~~~~~~~~Rl~ 291 (608)
T KOG4212|consen 272 AISMLDRQGLFDRRMTVRLD 291 (608)
T ss_pred HHHhhccCCCccccceeecc
Confidence 99999987777777777663
No 60
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.44 E-value=2.3e-13 Score=106.67 Aligned_cols=70 Identities=27% Similarity=0.604 Sum_probs=66.4
Q ss_pred cccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccE
Q 007417 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSK 401 (604)
Q Consensus 331 l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~ 401 (604)
|||+|||..+|+++|+++|++||.|..+.++.+ .++.++++|||+|.+.++|.+|++.|||..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 789999999999999999999999999999998 6789999999999999999999999999999998764
No 61
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=1.3e-13 Score=128.69 Aligned_cols=149 Identities=18% Similarity=0.330 Sum_probs=124.5
Q ss_pred CcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCeecCCCCccee
Q 007417 231 DTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVK 310 (604)
Q Consensus 231 ~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~g~~~r~l~ 310 (604)
..+||++||+.+.+.+|..+|..||. +.++.+. .+|+||+|.+.-+|..|+..|++..+. +..+.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~--~~d~~mk---------~gf~fv~fed~rda~Dav~~l~~~~l~----~e~~v 66 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGK--IPDADMK---------NGFGFVEFEDPRDADDAVHDLDGKELC----GERLV 66 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccc--cccceee---------cccceeccCchhhhhcccchhcCceec----ceeee
Confidence 36899999999999999999999998 7777764 468999999999999999999999884 33377
Q ss_pred ecccCCCCCC---------------ChhhhccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEE
Q 007417 311 VAFAEPLREP---------------DPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFI 375 (604)
Q Consensus 311 v~~a~~~~~~---------------~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV 375 (604)
+.++...... ...+..+.++|.|.+|+..+.|++|.+.|+++|.++...+ .++++||
T Consensus 67 ve~~r~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v 138 (216)
T KOG0106|consen 67 VEHARGKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFV 138 (216)
T ss_pred eecccccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccce
Confidence 8877642110 0112334578999999999999999999999999865554 2568999
Q ss_pred EeCCHHHHHHHHHHhcCCeeCCCccEE
Q 007417 376 DFSTHEAAVACINAINNKEFSDGNSKV 402 (604)
Q Consensus 376 ~F~~~~~A~~A~~~lng~~~~g~~~~v 402 (604)
+|.+.++|..|+..|++..+.++.|.+
T Consensus 139 ~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 139 EFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred eehhhhhhhhcchhccchhhcCceeee
Confidence 999999999999999999999999888
No 62
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=1.1e-12 Score=124.65 Aligned_cols=91 Identities=21% Similarity=0.296 Sum_probs=82.2
Q ss_pred ccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEe
Q 007417 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (604)
Q Consensus 326 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~ 405 (604)
.+.++|||.-|+..+++..|+..|+.||.|+.|.|++++.||+++|||||+|++..++.+|.+..+|..|+|+.|.|.+.
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred eecCCCCCCCC
Q 007417 406 ARLSNPMPKTQ 416 (604)
Q Consensus 406 ~~~~~~~~~~~ 416 (604)
.....+--.+.
T Consensus 179 RgRTvkgW~PR 189 (335)
T KOG0113|consen 179 RGRTVKGWLPR 189 (335)
T ss_pred ccccccccccc
Confidence 55544433333
No 63
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=3.9e-13 Score=124.46 Aligned_cols=83 Identities=23% Similarity=0.387 Sum_probs=78.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCC
Q 007417 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (604)
Q Consensus 148 ~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (604)
.++++|.|.|||.++++++|+++|.+||.|..|.|.+|+.||.++|||||.|.+.++|.+||..||+.-+..-.|+|+++
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 37889999999999999999999999999999999999999999999999999999999999999998888888888887
Q ss_pred CCC
Q 007417 228 EDN 230 (604)
Q Consensus 228 ~~~ 230 (604)
++.
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 653
No 64
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=2.9e-13 Score=112.61 Aligned_cols=81 Identities=16% Similarity=0.305 Sum_probs=76.8
Q ss_pred hccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEE
Q 007417 325 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (604)
Q Consensus 325 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~ 404 (604)
...+++|||+||++.++++.|.++|+++|.|..|.+-.|+.+-.+.|||||+|.+.++|..|+..+|++.+..+.|.+.|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred e
Q 007417 405 R 405 (604)
Q Consensus 405 ~ 405 (604)
.
T Consensus 113 D 113 (153)
T KOG0121|consen 113 D 113 (153)
T ss_pred c
Confidence 6
No 65
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.41 E-value=3.6e-13 Score=121.31 Aligned_cols=81 Identities=15% Similarity=0.336 Sum_probs=77.0
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEee
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
-.+.|.|-||.+-++.++|+.+|++||.|.+|.|++|+-|..++|||||.|....+|+.|+++|+|.++.|+.|.|+++.
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred e
Q 007417 407 R 407 (604)
Q Consensus 407 ~ 407 (604)
-
T Consensus 92 y 92 (256)
T KOG4207|consen 92 Y 92 (256)
T ss_pred c
Confidence 3
No 66
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=4.2e-13 Score=111.66 Aligned_cols=84 Identities=15% Similarity=0.341 Sum_probs=78.1
Q ss_pred hccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCccccc
Q 007417 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (604)
Q Consensus 145 ~~~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v 224 (604)
...+.++||||+||++-+||+.|.++|+++|+|..|.+=.|+.+..+-|||||+|.+.++|..||.-+++..|..+.|++
T Consensus 31 ~a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~ 110 (153)
T KOG0121|consen 31 EALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRI 110 (153)
T ss_pred HHHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceee
Confidence 34557999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCC
Q 007417 225 APSE 228 (604)
Q Consensus 225 ~~~~ 228 (604)
.+..
T Consensus 111 D~D~ 114 (153)
T KOG0121|consen 111 DWDA 114 (153)
T ss_pred eccc
Confidence 7653
No 67
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.41 E-value=5.7e-13 Score=104.60 Aligned_cols=69 Identities=41% Similarity=0.693 Sum_probs=64.1
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCccc
Q 007417 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRC 222 (604)
Q Consensus 153 vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i 222 (604)
|||+|||+.+|+++|+++|+.||.|..|++..++. +.++++|||+|.+.++|.+|+..+++..|.|+.|
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l 69 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKL 69 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEc
Confidence 79999999999999999999999999999999877 8999999999999999999999998899999876
No 68
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=1e-11 Score=109.44 Aligned_cols=73 Identities=16% Similarity=0.394 Sum_probs=68.4
Q ss_pred ccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEe
Q 007417 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (604)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~ 405 (604)
.++|||+||+..+++.+|...|..||.|..|.|.+. +-|||||+|+++.+|..|+..|+|+.|.|..|.|++.
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 478999999999999999999999999999988775 4789999999999999999999999999999999876
No 69
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.39 E-value=4.5e-12 Score=115.59 Aligned_cols=224 Identities=15% Similarity=0.166 Sum_probs=127.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEe-ecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeee---Cccccc
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLH-KNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVIC---GKRCGT 224 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~-~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~---g~~i~v 224 (604)
.-+||||.+||.++...+|..+|..|--.+.+.|. .++...-.+-+|||.|.+...|.+|+.+||+..+. +..|++
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 46899999999999999999999998766666663 23333345689999999999999999999998775 566777
Q ss_pred CCCCCCCcceecccCC---C-----Cc---HHHHHHHHHhcCCcceeEEEEeccccC---CCCcccEEEEEecCHHHHHH
Q 007417 225 APSEDNDTLFVGNICN---T-----WT---KEAIKQKLKDYGVEGVENINLVSDIQH---EGLSRGFAFVMFSCHVDAMA 290 (604)
Q Consensus 225 ~~~~~~~~l~v~nlp~---~-----~t---e~~l~~~f~~~G~~~v~~i~i~~~~~~---~g~skG~afV~f~~~e~A~~ 290 (604)
+.++.+++..-..... . ++ ....+....++ +....++.. -+...-.-=-.+...+.-.+
T Consensus 113 ElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qh-------d~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a 185 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQH-------DEGLSDPDELQEPGNADALKENDTTKSEALSA 185 (284)
T ss_pred eehhcCcccccCCCCCCCCCCccccccccChhhcccchhhc-------cccccCccccCCccccccCCCccccchhhhhh
Confidence 7666544332211111 0 00 00000000000 000000000 00000000000011110000
Q ss_pred HHHHhCCCCeecCCCCcceeecccCCCCCCChhhhccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcc
Q 007417 291 AYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRK 370 (604)
Q Consensus 291 Al~~l~~~~~~~g~~~r~l~v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~ 370 (604)
+...+-- -...++.+. +.........+|||-||...|++++|+.+|+.|-....++|... . ..
T Consensus 186 ~~~~~P~---------a~a~l~ks~----q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~--g~ 248 (284)
T KOG1457|consen 186 PDSKAPS---------ANAHLEKSS----QGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--G--GM 248 (284)
T ss_pred hhhcCCc---------ccchhhhhh----cccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--C--Cc
Confidence 0000000 000000000 00011123568999999999999999999999976666666332 1 24
Q ss_pred eEEEEEeCCHHHHHHHHHHhcCCeeC
Q 007417 371 DYGFIDFSTHEAAVACINAINNKEFS 396 (604)
Q Consensus 371 G~afV~F~~~~~A~~A~~~lng~~~~ 396 (604)
..|||+|++.+.|..|+..|.|..|.
T Consensus 249 ~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 249 PVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred ceEeecHHHHHHHHHHHHHhhcceec
Confidence 57999999999999999988887664
No 70
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.38 E-value=5.2e-14 Score=124.22 Aligned_cols=83 Identities=25% Similarity=0.498 Sum_probs=78.5
Q ss_pred hhccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccc
Q 007417 144 DRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCG 223 (604)
Q Consensus 144 ~~~~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~ 223 (604)
-++-+++.-|||+|||+++||.||-.+|++||+|++|.+++|+.||+++||||++|.+..+-..|+..||+..|.||.|+
T Consensus 29 H~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtir 108 (219)
T KOG0126|consen 29 HQEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIR 108 (219)
T ss_pred hhhcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEE
Confidence 45566889999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCC
Q 007417 224 TAP 226 (604)
Q Consensus 224 v~~ 226 (604)
|..
T Consensus 109 VDH 111 (219)
T KOG0126|consen 109 VDH 111 (219)
T ss_pred eee
Confidence 754
No 71
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.38 E-value=1.2e-12 Score=125.46 Aligned_cols=75 Identities=20% Similarity=0.374 Sum_probs=69.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCCC
Q 007417 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (604)
Q Consensus 150 ~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~ 228 (604)
.++|||+|||+.+|+++|++||+.||+|++|.|+.+. .++|||||+|.++++|..||. |++..|.|+.|.|.++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~---~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSEN---ERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC---CCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEecc
Confidence 5799999999999999999999999999999999885 357999999999999999996 99999999999998765
No 72
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=1.2e-12 Score=124.61 Aligned_cols=79 Identities=25% Similarity=0.498 Sum_probs=74.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCC
Q 007417 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (604)
Q Consensus 148 ~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (604)
.+-+||||.-|+++++|..|+..|+.||+|+.|+|++++.||+++|||||+|.++.+...|.+..++..|.|+.|.|..
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999999885543
No 73
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=9.7e-13 Score=121.87 Aligned_cols=80 Identities=20% Similarity=0.410 Sum_probs=75.4
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEee
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
...+|.|.||+.++++.+|+++|.+||.|..|.|.+|+.||.+||||||.|.+.++|.+||..|||.-+..=.|.|+|+.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999998778887764
No 74
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.36 E-value=1.7e-12 Score=101.92 Aligned_cols=70 Identities=24% Similarity=0.566 Sum_probs=64.2
Q ss_pred cccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccE
Q 007417 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSK 401 (604)
Q Consensus 331 l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~ 401 (604)
|+|+|||+.+++++|+++|+.||.|..+.+..++. +.++|+|||+|.++++|.+|+..+++..|.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 68999999999999999999999999999999977 89999999999999999999999999999998753
No 75
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.36 E-value=9e-13 Score=126.83 Aligned_cols=83 Identities=13% Similarity=0.270 Sum_probs=75.6
Q ss_pred hhccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEE
Q 007417 324 IMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 403 (604)
Q Consensus 324 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~ 403 (604)
.....++|+|.|||+..-+-||+.+|.+||.|.+|.|+.+. ..+||||||+|+++++|++|-++|||+.+.||+|.|.
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn 169 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVN 169 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEe
Confidence 34456899999999999999999999999999999999874 5589999999999999999999999999999999998
Q ss_pred Eeeec
Q 007417 404 LRARL 408 (604)
Q Consensus 404 ~~~~~ 408 (604)
.+...
T Consensus 170 ~ATar 174 (376)
T KOG0125|consen 170 NATAR 174 (376)
T ss_pred ccchh
Confidence 76554
No 76
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.35 E-value=1.4e-12 Score=117.47 Aligned_cols=82 Identities=27% Similarity=0.506 Sum_probs=77.0
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccC
Q 007417 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (604)
Q Consensus 146 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (604)
++..-.+|.|-||.+.+|.++|+.+|++||.|-+|.|+.|+.|+.++|||||.|....+|+.|+++|++.+|.|+.|.|+
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999998766
Q ss_pred CC
Q 007417 226 PS 227 (604)
Q Consensus 226 ~~ 227 (604)
.+
T Consensus 89 ~a 90 (256)
T KOG4207|consen 89 MA 90 (256)
T ss_pred hh
Confidence 54
No 77
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.32 E-value=3.7e-12 Score=122.15 Aligned_cols=79 Identities=15% Similarity=0.237 Sum_probs=71.6
Q ss_pred ccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEeee
Q 007417 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407 (604)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~~ 407 (604)
.++|||+|||+.+|+++|+++|+.||.|.+|.|+.+.. ++|||||+|.++++|..||. |||..|.|+.|.|.+...
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 36899999999999999999999999999999998853 57999999999999999995 999999999999988655
Q ss_pred cCC
Q 007417 408 LSN 410 (604)
Q Consensus 408 ~~~ 410 (604)
+..
T Consensus 80 ~~~ 82 (260)
T PLN03120 80 YQL 82 (260)
T ss_pred CCC
Confidence 543
No 78
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.32 E-value=3.7e-13 Score=118.84 Aligned_cols=84 Identities=19% Similarity=0.434 Sum_probs=78.3
Q ss_pred ccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEeee
Q 007417 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407 (604)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~~ 407 (604)
+.-|||+|||+.+|+.+|--+|++||+|+.|.+++|+.||+++||||++|++..+..-|+..|||..|.||.|+|.-...
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~~ 114 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVSN 114 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeeccc
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999987655
Q ss_pred cCCC
Q 007417 408 LSNP 411 (604)
Q Consensus 408 ~~~~ 411 (604)
+..|
T Consensus 115 Yk~p 118 (219)
T KOG0126|consen 115 YKKP 118 (219)
T ss_pred ccCC
Confidence 5444
No 79
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.31 E-value=5.6e-12 Score=118.82 Aligned_cols=77 Identities=18% Similarity=0.244 Sum_probs=70.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCCC
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~ 228 (604)
...||||+||++.+|+++|++||+.||+|.+|+|+++ +..++||||+|.++++|..|+. |++..|.++.|.|.+..
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS---GEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC---CCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 4679999999999999999999999999999999988 4556899999999999999996 99999999999987755
Q ss_pred C
Q 007417 229 D 229 (604)
Q Consensus 229 ~ 229 (604)
.
T Consensus 80 ~ 80 (243)
T PLN03121 80 Q 80 (243)
T ss_pred c
Confidence 3
No 80
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.31 E-value=1.6e-11 Score=123.69 Aligned_cols=169 Identities=24% Similarity=0.431 Sum_probs=121.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCCCC
Q 007417 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSED 229 (604)
Q Consensus 150 ~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~~ 229 (604)
.++|||+|||+++|+++|.++|.+||.|..|+++.++.+++++|||||+|.+.++|..|+..+++..|.|+.|.|.....
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 69999999999999999999999999999999999998999999999999999999999999999999999998877543
Q ss_pred --CCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCeecCCCCc
Q 007417 230 --NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 307 (604)
Q Consensus 230 --~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~g~~~r 307 (604)
........+ .. +.. .. +
T Consensus 195 ~~~~~~~~~~~---------------------------~~--------------------~~~-----~~---------~ 213 (306)
T COG0724 195 ASQPRSELSNN---------------------------LD--------------------ASF-----AK---------K 213 (306)
T ss_pred ccccccccccc---------------------------cc--------------------hhh-----hc---------c
Confidence 000000000 00 000 00 0
Q ss_pred ceeecccCCCCCCChhhhccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH
Q 007417 308 TVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387 (604)
Q Consensus 308 ~l~v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~ 387 (604)
. .............+++.+++..++...+...|..+|.+..+.+...........+.++.+.....+..++
T Consensus 214 ~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (306)
T COG0724 214 L---------SRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESN 284 (306)
T ss_pred c---------cccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhh
Confidence 0 0000011123467899999999999999999999999977777655444334444445544444444444
Q ss_pred H
Q 007417 388 N 388 (604)
Q Consensus 388 ~ 388 (604)
.
T Consensus 285 ~ 285 (306)
T COG0724 285 S 285 (306)
T ss_pred c
Confidence 3
No 81
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=2.2e-12 Score=120.50 Aligned_cols=138 Identities=26% Similarity=0.484 Sum_probs=117.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCCC--
Q 007417 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE-- 228 (604)
Q Consensus 151 ~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~-- 228 (604)
..|||++||+.+.+.+|..||..||.|..|.+. .||+||+|.+..+|.-|+..|++..|.+..+.++.+.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 469999999999999999999999999999884 4689999999999999999999999988876554433
Q ss_pred ------------------------CCCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecC
Q 007417 229 ------------------------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC 284 (604)
Q Consensus 229 ------------------------~~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~ 284 (604)
....|+|.+++..+.+++|.++|..+|. ++...+ ..+++||+|+.
T Consensus 74 ~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~--~~~~~~---------~~~~~~v~Fs~ 142 (216)
T KOG0106|consen 74 RRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGE--VTYVDA---------RRNFAFVEFSE 142 (216)
T ss_pred ccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCC--Cchhhh---------hccccceeehh
Confidence 2457888999999999999999999998 544333 25689999999
Q ss_pred HHHHHHHHHHhCCCCeecCCCCcceee
Q 007417 285 HVDAMAAYKRLQKPDVVFGHPERTVKV 311 (604)
Q Consensus 285 ~e~A~~Al~~l~~~~~~~g~~~r~l~v 311 (604)
.+++..|+..|++..+ .++.|.+
T Consensus 143 ~~da~ra~~~l~~~~~----~~~~l~~ 165 (216)
T KOG0106|consen 143 QEDAKRALEKLDGKKL----NGRRISV 165 (216)
T ss_pred hhhhhhcchhccchhh----cCceeee
Confidence 9999999999999988 3566666
No 82
>PLN03213 repressor of silencing 3; Provisional
Probab=99.29 E-value=7.1e-12 Score=126.28 Aligned_cols=77 Identities=18% Similarity=0.393 Sum_probs=71.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeeh--HHHHHHHHhcCCCeeeCcccccCC
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANK--EHAKRALTEMKNPVICGKRCGTAP 226 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~--e~A~~Al~~l~~~~l~g~~i~v~~ 226 (604)
..-+|||+||++++|+++|+.+|..||.|..|.|+ +.|| +|||||+|.+. .++.+||..|++..+.|+.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 46899999999999999999999999999999999 4567 99999999987 789999999999999999999988
Q ss_pred CCC
Q 007417 227 SED 229 (604)
Q Consensus 227 ~~~ 229 (604)
+++
T Consensus 85 AKP 87 (759)
T PLN03213 85 AKE 87 (759)
T ss_pred ccH
Confidence 764
No 83
>smart00362 RRM_2 RNA recognition motif.
Probab=99.26 E-value=2.2e-11 Score=95.26 Aligned_cols=71 Identities=30% Similarity=0.667 Sum_probs=66.3
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCccccc
Q 007417 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (604)
Q Consensus 152 ~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v 224 (604)
+|+|+|||..+++++|+++|.+||.|..+.++.++ +.++++|||+|.+.++|.+|+..+++..+.|+.|.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 58999999999999999999999999999998876 788999999999999999999999999999988765
No 84
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=7.9e-12 Score=110.15 Aligned_cols=75 Identities=27% Similarity=0.553 Sum_probs=68.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCCC
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~ 228 (604)
-.++|||+||+..+|+.+|+..|..||+|..|.|... +-|||||+|+++.+|..|+..|++..|+|..|+|+.+.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 3789999999999999999999999999999999654 58999999999999999999999999999998876654
No 85
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.22 E-value=2.2e-11 Score=102.38 Aligned_cols=87 Identities=26% Similarity=0.382 Sum_probs=80.4
Q ss_pred hhhhccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccE
Q 007417 322 PEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSK 401 (604)
Q Consensus 322 ~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~ 401 (604)
|........|||.++...+++++|.+.|..||.|+.+.+-.|+.||-.+|||+|+|++..+|++|+.+|||..|-|..|.
T Consensus 66 PqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~ 145 (170)
T KOG0130|consen 66 PQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVS 145 (170)
T ss_pred CccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCcee
Confidence 33445578999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeec
Q 007417 402 VKLRARL 408 (604)
Q Consensus 402 v~~~~~~ 408 (604)
|.|..-.
T Consensus 146 VDw~Fv~ 152 (170)
T KOG0130|consen 146 VDWCFVK 152 (170)
T ss_pred EEEEEec
Confidence 9987544
No 86
>smart00360 RRM RNA recognition motif.
Probab=99.22 E-value=3.8e-11 Score=93.47 Aligned_cols=70 Identities=33% Similarity=0.652 Sum_probs=65.8
Q ss_pred EcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCccccc
Q 007417 155 IGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (604)
Q Consensus 155 V~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v 224 (604)
|+|||..+++++|+++|++||.|..+.++.++.++.++++|||+|.+.++|.+|+..+++..+.++.|.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 6899999999999999999999999999998888999999999999999999999999999898888765
No 87
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.22 E-value=2.7e-11 Score=97.15 Aligned_cols=77 Identities=18% Similarity=0.295 Sum_probs=69.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCC
Q 007417 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (604)
Q Consensus 148 ~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (604)
+.++.|||+|||+++|.+++.++|.+||.|..|+|=.. ...+|.|||.|++..+|.+|+..|++..+.++.+.|...
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~---k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT---KETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCc---cCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 35789999999999999999999999999999999544 456999999999999999999999999999988776543
No 88
>PLN03213 repressor of silencing 3; Provisional
Probab=99.21 E-value=2.1e-11 Score=122.97 Aligned_cols=75 Identities=13% Similarity=0.275 Sum_probs=69.3
Q ss_pred ccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCH--HHHHHHHHHhcCCeeCCCccEEEEe
Q 007417 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTH--EAAVACINAINNKEFSDGNSKVKLR 405 (604)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~--~~A~~A~~~lng~~~~g~~~~v~~~ 405 (604)
..+|||+||++.+++++|+.+|..||.|..|.|++ .+| ||||||+|.+. .++.+||..|||..+.|+.|+|..+
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKA 85 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKA 85 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeec
Confidence 46899999999999999999999999999999994 466 99999999987 7899999999999999999999865
Q ss_pred e
Q 007417 406 A 406 (604)
Q Consensus 406 ~ 406 (604)
.
T Consensus 86 K 86 (759)
T PLN03213 86 K 86 (759)
T ss_pred c
Confidence 3
No 89
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.21 E-value=1.8e-11 Score=117.96 Aligned_cols=78 Identities=24% Similarity=0.465 Sum_probs=72.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCCC
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~ 228 (604)
-.++|+|.|||+...+-||+.+|.+||+|.+|.||-+- .-+|||+||+|.+.++|++|.++||+..|.||+|.|..+.
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 46899999999999999999999999999999999763 3589999999999999999999999999999999887664
No 90
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.21 E-value=1.1e-09 Score=114.99 Aligned_cols=142 Identities=20% Similarity=0.161 Sum_probs=108.4
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccC
Q 007417 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (604)
Q Consensus 146 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (604)
...+.+.+-+.++++.+...|+++||... .|..+.|..+...+...|-++|.|....++++|++. +......|.+.+.
T Consensus 307 vv~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~ 384 (944)
T KOG4307|consen 307 VVSDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTG 384 (944)
T ss_pred ccchhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-Cchhhhhcceeec
Confidence 34567888999999999999999998664 366666766655555689999999999999999985 4444444444332
Q ss_pred CC---------------------------------------------CCCCcceecccCCCCcHHHHHHHHHhcCCccee
Q 007417 226 PS---------------------------------------------EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVE 260 (604)
Q Consensus 226 ~~---------------------------------------------~~~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~ 260 (604)
+. ....+|||..||..+++..+.++|...-. |+
T Consensus 385 P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~--Ve 462 (944)
T KOG4307|consen 385 PPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAA--VE 462 (944)
T ss_pred CCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhh--hh
Confidence 21 11468999999999999999999988766 77
Q ss_pred E-EEEeccccCCCCcccEEEEEecCHHHHHHHHH
Q 007417 261 N-INLVSDIQHEGLSRGFAFVMFSCHVDAMAAYK 293 (604)
Q Consensus 261 ~-i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~ 293 (604)
+ |.|.+.+ +++.++.|||.|...+++.+|+.
T Consensus 463 d~I~lt~~P--~~~~~~~afv~F~~~~a~~~a~~ 494 (944)
T KOG4307|consen 463 DFIELTRLP--TDLLRPAAFVAFIHPTAPLTASS 494 (944)
T ss_pred heeEeccCC--cccccchhhheeccccccchhhh
Confidence 6 6665554 78889999999998777766654
No 91
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.20 E-value=4e-11 Score=96.18 Aligned_cols=75 Identities=12% Similarity=0.229 Sum_probs=69.4
Q ss_pred ccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEe
Q 007417 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (604)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~ 405 (604)
.+.|||+|||+.+|.+++.++|.+||.|..|+|-..+.| +|.|||.|++..+|.+|+..|+|..+.++.+.|-+-
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T---rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET---RGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc---CceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 468999999999999999999999999999999877665 899999999999999999999999999999888663
No 92
>smart00362 RRM_2 RNA recognition motif.
Probab=99.20 E-value=4.6e-11 Score=93.37 Aligned_cols=71 Identities=23% Similarity=0.559 Sum_probs=66.0
Q ss_pred ccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEE
Q 007417 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 402 (604)
Q Consensus 330 ~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v 402 (604)
+|+|+|||..+++++|+++|.+||.|..+.+..+. +.++|+|||+|.+.++|..|+..+++..|.|+.+.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 58999999999999999999999999999998876 678999999999999999999999999999987665
No 93
>smart00360 RRM RNA recognition motif.
Probab=99.20 E-value=6e-11 Score=92.36 Aligned_cols=70 Identities=29% Similarity=0.579 Sum_probs=66.0
Q ss_pred cCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEE
Q 007417 333 LDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 402 (604)
Q Consensus 333 v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v 402 (604)
|+|||..+++++|+++|++||.|..+.+..++.++.++|+|||+|.++++|..|+..|++..+.++.+.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 6899999999999999999999999999998878899999999999999999999999999999988765
No 94
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=7.5e-12 Score=113.73 Aligned_cols=81 Identities=22% Similarity=0.476 Sum_probs=77.5
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEee
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
..++|||++|...+++.-|...|-+||.|+.|.++.|..+++.|||+||+|.-.++|.+||..||+.++.||.|+|.++.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred e
Q 007417 407 R 407 (604)
Q Consensus 407 ~ 407 (604)
+
T Consensus 89 P 89 (298)
T KOG0111|consen 89 P 89 (298)
T ss_pred C
Confidence 4
No 95
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.17 E-value=6.8e-11 Score=111.58 Aligned_cols=77 Identities=12% Similarity=0.153 Sum_probs=69.1
Q ss_pred ccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEeee
Q 007417 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407 (604)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~~ 407 (604)
..+|||+||++.+|+++|++||+.||.|..|.|+++. ..++||||+|.++++|..|+. |||..|.++.|.|.....
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQ 80 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCcc
Confidence 4689999999999999999999999999999999984 456899999999999999994 999999999988876443
Q ss_pred c
Q 007417 408 L 408 (604)
Q Consensus 408 ~ 408 (604)
+
T Consensus 81 y 81 (243)
T PLN03121 81 Y 81 (243)
T ss_pred c
Confidence 3
No 96
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.16 E-value=2.6e-11 Score=101.89 Aligned_cols=81 Identities=25% Similarity=0.447 Sum_probs=75.9
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccC
Q 007417 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (604)
Q Consensus 146 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (604)
..-+...|||.++...+|+++|.+.|..||+|..+.+-.|+.||-.+|||+|+|.+.+.|++|+..+|+..|.|..|.|.
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VD 147 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVD 147 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEE
Confidence 34467899999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred C
Q 007417 226 P 226 (604)
Q Consensus 226 ~ 226 (604)
+
T Consensus 148 w 148 (170)
T KOG0130|consen 148 W 148 (170)
T ss_pred E
Confidence 5
No 97
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=3.3e-11 Score=109.62 Aligned_cols=82 Identities=18% Similarity=0.539 Sum_probs=78.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCCC
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~ 228 (604)
..+||||++|..++|+.-|...|=.||.|.+|.++.|-.+.+++||+||+|...|+|.+|+..||...|.||.|+|..+.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred CC
Q 007417 229 DN 230 (604)
Q Consensus 229 ~~ 230 (604)
+.
T Consensus 89 P~ 90 (298)
T KOG0111|consen 89 PE 90 (298)
T ss_pred Cc
Confidence 63
No 98
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.13 E-value=1.3e-11 Score=132.73 Aligned_cols=225 Identities=17% Similarity=0.178 Sum_probs=179.6
Q ss_pred CCCEEEEcCCCCCCCHH-HHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCC
Q 007417 149 KEHEIFIGGLDRDATQE-DVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~-dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (604)
......+.|+.+..... ..+..|..+|.|+.|++......-+...+.++.+....+++.|.. ..+..+.++.+.+..+
T Consensus 570 ~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~~av~~a 648 (881)
T KOG0128|consen 570 ERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALANRSAAVGLA 648 (881)
T ss_pred hhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccCCccccCCCC
Confidence 45667788888877665 678899999999999997633323334489999999999999987 4666777777766544
Q ss_pred CC----------------CCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHH
Q 007417 228 ED----------------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAA 291 (604)
Q Consensus 228 ~~----------------~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~A 291 (604)
+. ..++|++||++.+.+.+|...|..++. +..+++... ..+++.+|+|||.|...+.+.+|
T Consensus 649 d~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~--~e~vqi~~h-~n~~~~rG~~Y~~F~~~~~~~aa 725 (881)
T KOG0128|consen 649 DAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGT--IEVVQIVIH-KNEKRFRGKAYVEFLKPEHAGAA 725 (881)
T ss_pred CchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccch--hhhHHHHHH-hhccccccceeeEeecCCchhhh
Confidence 32 247899999999999999999999987 444444411 34789999999999999999999
Q ss_pred HHHhCCCCeecCCCCcceeecccCCCCCCChhhhccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcce
Q 007417 292 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKD 371 (604)
Q Consensus 292 l~~l~~~~~~~g~~~r~l~v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G 371 (604)
+.-.....+ ....|+|+|+|+..|.+.|+.+|+++|.++.+.++..+ .|+++|
T Consensus 726 V~f~d~~~~--------------------------gK~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg 778 (881)
T KOG0128|consen 726 VAFRDSCFF--------------------------GKISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKG 778 (881)
T ss_pred hhhhhhhhh--------------------------hhhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-cccccc
Confidence 875443332 12579999999999999999999999999999887764 589999
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEE
Q 007417 372 YGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (604)
Q Consensus 372 ~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~ 404 (604)
.+||.|.+..+|.+++..+....+.-+.+.|.+
T Consensus 779 ~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~v 811 (881)
T KOG0128|consen 779 KARVDYNTEADASRKVASVDVAGKRENNGEVQV 811 (881)
T ss_pred ceeccCCCcchhhhhcccchhhhhhhcCccccc
Confidence 999999999999999988887777776666654
No 99
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.12 E-value=2.6e-10 Score=89.55 Aligned_cols=73 Identities=34% Similarity=0.684 Sum_probs=67.1
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccC
Q 007417 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (604)
Q Consensus 152 ~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (604)
+|+|+|||+.+++++|+++|+.||.|..+.+..++.+ .++++|||+|.+.++|..|+..+++..+.++.+.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 5899999999999999999999999999999987655 779999999999999999999999998999887653
No 100
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.11 E-value=4.3e-09 Score=103.15 Aligned_cols=231 Identities=16% Similarity=0.169 Sum_probs=169.1
Q ss_pred CCCEEEE--cCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCccc--cc
Q 007417 149 KEHEIFI--GGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRC--GT 224 (604)
Q Consensus 149 ~~~~vfV--~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i--~v 224 (604)
.+..|.+ -|--+.+|-+-|..++..+|+|..|.|++. +--.|.|+|.+.+.|++|..+||+..|..-.| +|
T Consensus 119 pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-----ngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKI 193 (494)
T KOG1456|consen 119 PNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-----NGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKI 193 (494)
T ss_pred CCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-----cceeeEEeechhHHHHHHHhhcccccccccceeEEE
Confidence 3444444 454557899999999999999999998753 34469999999999999999999876542211 11
Q ss_pred CCCCC---------------------------------------------------------------------------
Q 007417 225 APSED--------------------------------------------------------------------------- 229 (604)
Q Consensus 225 ~~~~~--------------------------------------------------------------------------- 229 (604)
+.+++
T Consensus 194 eyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~ 273 (494)
T KOG1456|consen 194 EYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYR 273 (494)
T ss_pred EecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccc
Confidence 11100
Q ss_pred -------------CCcceecccCC-CCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHh
Q 007417 230 -------------NDTLFVGNICN-TWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRL 295 (604)
Q Consensus 230 -------------~~~l~v~nlp~-~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l 295 (604)
...+.|-+|.. .+.-+.|-.+|-.||. |..|++|+.. .|.|.|++.+..+.+.|+..|
T Consensus 274 ~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGN--V~rvkFmkTk------~gtamVemgd~~aver~v~hL 345 (494)
T KOG1456|consen 274 DGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGN--VERVKFMKTK------PGTAMVEMGDAYAVERAVTHL 345 (494)
T ss_pred cCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCc--eeeEEEeecc------cceeEEEcCcHHHHHHHHHHh
Confidence 12344555544 3556888999999999 9999999874 578999999999999999999
Q ss_pred CCCCeecCCCCcceeecccCCCCC--------------------------------CChhhhccccccccCCCCcccChh
Q 007417 296 QKPDVVFGHPERTVKVAFAEPLRE--------------------------------PDPEIMAHVKTVFLDGVPPHWKEN 343 (604)
Q Consensus 296 ~~~~~~~g~~~r~l~v~~a~~~~~--------------------------------~~~~~~~~~~~l~v~nLp~~~t~~ 343 (604)
|+..++ +.+|.+..+...-. ....+..+++.|..-|.|..+||+
T Consensus 346 nn~~lf----G~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe 421 (494)
T KOG1456|consen 346 NNIPLF----GGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEE 421 (494)
T ss_pred ccCccc----cceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHH
Confidence 998873 35555544421100 111223456789999999999999
Q ss_pred hHHhhhcccCC-EEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCC
Q 007417 344 QIRDQIKGYGD-VIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG 398 (604)
Q Consensus 344 ~l~~~F~~~G~-v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~ 398 (604)
.|..+|...+. .+.++|+.-+.. ..--+.++|++.++|..||..+|...|.+.
T Consensus 422 ~l~~i~nek~v~~~svkvFp~kse--rSssGllEfe~~s~Aveal~~~NH~pi~~p 475 (494)
T KOG1456|consen 422 QLIGICNEKDVPPTSVKVFPLKSE--RSSSGLLEFENKSDAVEALMKLNHYPIEGP 475 (494)
T ss_pred HHHHHhhhcCCCcceEEeeccccc--ccccceeeeehHHHHHHHHHHhccccccCC
Confidence 99999987653 466777665422 233579999999999999999999988765
No 101
>smart00361 RRM_1 RNA recognition motif.
Probab=99.10 E-value=2.3e-10 Score=89.57 Aligned_cols=61 Identities=18% Similarity=0.323 Sum_probs=54.8
Q ss_pred hhhHHhhhc----ccCCEEEEE-EeecCCC--CCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEE
Q 007417 342 ENQIRDQIK----GYGDVIRIV-LARNMST--AKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 402 (604)
Q Consensus 342 ~~~l~~~F~----~~G~v~~v~-i~~d~~~--g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v 402 (604)
+++|+++|+ +||.|..|. |+.++.+ +.++|||||+|.+.++|.+|+..|||+.|.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888888 999999995 7777666 899999999999999999999999999999998776
No 102
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=4.8e-11 Score=115.81 Aligned_cols=87 Identities=26% Similarity=0.434 Sum_probs=81.2
Q ss_pred hhhccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCccc
Q 007417 143 KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRC 222 (604)
Q Consensus 143 ~~~~~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i 222 (604)
......+.+.|||..|.+-+|++||.-+|+.||+|.+|.|++|+.||.+.-||||+|.+.+++.+|.-+|++.+|..++|
T Consensus 232 dAd~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRI 311 (479)
T KOG0415|consen 232 DADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRI 311 (479)
T ss_pred ccccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceE
Confidence 34445678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 007417 223 GTAPSED 229 (604)
Q Consensus 223 ~v~~~~~ 229 (604)
+|..+..
T Consensus 312 HVDFSQS 318 (479)
T KOG0415|consen 312 HVDFSQS 318 (479)
T ss_pred Eeehhhh
Confidence 9887654
No 103
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.10 E-value=3.6e-10 Score=110.92 Aligned_cols=148 Identities=26% Similarity=0.259 Sum_probs=112.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcc----CCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCccc--
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFERI----GEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRC-- 222 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~~----G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i-- 222 (604)
+.-.|.+++||+++|+.++.+||..- |-++.|.+++.+ .|+..|-|||.|..+++|+.||.+. ...|.-|.|
T Consensus 160 ~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~kh-rq~iGqRYIEl 237 (508)
T KOG1365|consen 160 NQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRKH-RQNIGQRYIEL 237 (508)
T ss_pred cceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHHH-HHHHhHHHHHH
Confidence 45678899999999999999999642 245667777653 5899999999999999999999862 212211111
Q ss_pred -----------------------------------ccCCCCCCCcceecccCCCCcHHHHHHHHHhcCC-cceeEEEEec
Q 007417 223 -----------------------------------GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGV-EGVENINLVS 266 (604)
Q Consensus 223 -----------------------------------~v~~~~~~~~l~v~nlp~~~te~~l~~~f~~~G~-~~v~~i~i~~ 266 (604)
.+.......+|.+++||++++.++|.++|..|-. .....+.++.
T Consensus 238 FRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~ 317 (508)
T KOG1365|consen 238 FRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVL 317 (508)
T ss_pred HHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEE
Confidence 1223344679999999999999999999998853 1122355665
Q ss_pred cccCCCCcccEEEEEecCHHHHHHHHHHhCCCCe
Q 007417 267 DIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV 300 (604)
Q Consensus 267 ~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~ 300 (604)
+ ..|+..|-|||+|.+.++|.+|....+++..
T Consensus 318 N--~qGrPSGeAFIqm~nae~a~aaaqk~hk~~m 349 (508)
T KOG1365|consen 318 N--GQGRPSGEAFIQMRNAERARAAAQKCHKKLM 349 (508)
T ss_pred c--CCCCcChhhhhhhhhhHHHHHHHHHHHHhhc
Confidence 5 4899999999999999999999988776543
No 104
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.09 E-value=4.2e-10 Score=88.37 Aligned_cols=73 Identities=29% Similarity=0.592 Sum_probs=67.5
Q ss_pred ccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEE
Q 007417 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 403 (604)
Q Consensus 330 ~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~ 403 (604)
+|+|+|||..+++++|+++|+.+|.|..+.+..+..+ .++|+|||+|.++++|..|+..+++..+.++.+.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 4789999999999999999999999999999987654 779999999999999999999999999999888775
No 105
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.05 E-value=2.6e-10 Score=118.75 Aligned_cols=79 Identities=23% Similarity=0.540 Sum_probs=76.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCCCC
Q 007417 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSED 229 (604)
Q Consensus 151 ~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~~ 229 (604)
++|||+|||+++++++|..+|+..|.|.+++++.|+.||+++||||++|.+.++|..|++.||+..+.|++|+|.++..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999987653
No 106
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.04 E-value=8.4e-10 Score=114.21 Aligned_cols=76 Identities=18% Similarity=0.359 Sum_probs=65.0
Q ss_pred cccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEe
Q 007417 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (604)
Q Consensus 329 ~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~ 405 (604)
..|||+|||.+++...|+++|..||.|+...|......++..+||||+|.+.+++..||.+ +-..|+++++.|+.+
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek 364 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEK 364 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEec
Confidence 4599999999999999999999999999988866543445459999999999999999986 467888888888765
No 107
>smart00361 RRM_1 RNA recognition motif.
Probab=99.04 E-value=6e-10 Score=87.20 Aligned_cols=61 Identities=23% Similarity=0.449 Sum_probs=55.2
Q ss_pred HHHHHHHhh----ccCCeEEEE-EeecCCC--CCCcceEEEEEeehHHHHHHHHhcCCCeeeCccccc
Q 007417 164 QEDVRKVFE----RIGEVIEVR-LHKNFST--NRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (604)
Q Consensus 164 e~dL~~~F~----~~G~V~~v~-i~~d~~t--g~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v 224 (604)
+++|+++|+ +||.|.+|. |+.++.+ ++++|||||+|.+.++|.+|+..||+..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578899998 999999996 7777766 899999999999999999999999999999998864
No 108
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.02 E-value=3.2e-10 Score=118.05 Aligned_cols=80 Identities=28% Similarity=0.472 Sum_probs=77.2
Q ss_pred cccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEeeec
Q 007417 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARL 408 (604)
Q Consensus 329 ~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~~~ 408 (604)
..|||+|||++++++.|..+|+..|.|..++++.|+.||+++||||++|.+.++|..|++.|||.++.|+.|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999987554
No 109
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.02 E-value=5.3e-10 Score=111.38 Aligned_cols=175 Identities=14% Similarity=0.224 Sum_probs=131.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCC
Q 007417 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (604)
Q Consensus 148 ~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (604)
....++|++++.+.+.+.++..++...|.+..+.+.....+..++++++|.|...+.+..||.......+.++.+.....
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 46789999999999999999999999999888888877778899999999999999999999854333333332210000
Q ss_pred CCCCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCeecCCCCc
Q 007417 228 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 307 (604)
Q Consensus 228 ~~~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~g~~~r 307 (604)
. .+..+. .+.. .
T Consensus 166 ~---------------------------------~~~~~~---------------------------~n~~--------~ 177 (285)
T KOG4210|consen 166 T---------------------------------RRGLRP---------------------------KNKL--------S 177 (285)
T ss_pred c---------------------------------cccccc---------------------------cchh--------c
Confidence 0 000000 0000 0
Q ss_pred ceeecccCCCCCCChhhhccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH
Q 007417 308 TVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387 (604)
Q Consensus 308 ~l~v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~ 387 (604)
.. ......+.++|.+|+..++.++|+.+|..+|.|..++++.++.++.++||++|.|.+...+..|+
T Consensus 178 ~~-------------~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~ 244 (285)
T KOG4210|consen 178 RL-------------SSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLAL 244 (285)
T ss_pred cc-------------ccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHh
Confidence 00 00011234559999999999999999999999999999999999999999999999999999998
Q ss_pred HHhcCCeeCCCccEEEE
Q 007417 388 NAINNKEFSDGNSKVKL 404 (604)
Q Consensus 388 ~~lng~~~~g~~~~v~~ 404 (604)
.. ....+.++.+.+..
T Consensus 245 ~~-~~~~~~~~~~~~~~ 260 (285)
T KOG4210|consen 245 ND-QTRSIGGRPLRLEE 260 (285)
T ss_pred hc-ccCcccCccccccc
Confidence 76 77888888766653
No 110
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.02 E-value=1.3e-09 Score=114.13 Aligned_cols=159 Identities=21% Similarity=0.385 Sum_probs=128.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCC
Q 007417 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (604)
Q Consensus 148 ~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (604)
...+.+||++||..+++..++++...||.+....++.+..+|.++||||.+|.+.-....|++.||+..+.++.|.|..+
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 35679999999999999999999999999999999999999999999999999999999999999999998888876543
Q ss_pred CC------------------------------CCcceecccCCCCcH-------------HHHHHHHHhcCCcceeEEEE
Q 007417 228 ED------------------------------NDTLFVGNICNTWTK-------------EAIKQKLKDYGVEGVENINL 264 (604)
Q Consensus 228 ~~------------------------------~~~l~v~nlp~~~te-------------~~l~~~f~~~G~~~v~~i~i 264 (604)
-. +..|.+.|+ +|+ ++++.-+.+||. |..|.+
T Consensus 367 ~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~---Vt~deLkdd~EyeeIlEdvr~ec~k~g~--v~~v~i 441 (500)
T KOG0120|consen 367 IVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNV---VTPDELKDDEEYEEILEDVRTECAKFGA--VRSVEI 441 (500)
T ss_pred hccchhccccCCccccccccchhhhcccCCCcchhhhhhhc---CCHHHhcchHHHHHHHHHHHHHhcccCc--eeEEec
Confidence 21 111222221 222 455667778888 999988
Q ss_pred ecc-cc-CCCCcccEEEEEecCHHHHHHHHHHhCCCCeecCCCCcceeecccC
Q 007417 265 VSD-IQ-HEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAE 315 (604)
Q Consensus 265 ~~~-~~-~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~g~~~r~l~v~~a~ 315 (604)
.+. .. ......|..||+|.+.+++++|+++|+|..+ .+|.|...|..
T Consensus 442 pr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF----~nRtVvtsYyd 490 (500)
T KOG0120|consen 442 PRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKF----ANRTVVASYYD 490 (500)
T ss_pred CCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCcee----CCcEEEEEecC
Confidence 876 21 2345567899999999999999999999998 67888777654
No 111
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.00 E-value=1.4e-09 Score=81.13 Aligned_cols=56 Identities=21% Similarity=0.492 Sum_probs=50.4
Q ss_pred HHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEe
Q 007417 345 IRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (604)
Q Consensus 345 l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~ 405 (604)
|+++|++||.|..+.+.... +++|||+|.+.++|..|+..||+..|.|+.|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999997763 589999999999999999999999999999999874
No 112
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.00 E-value=7.6e-10 Score=111.36 Aligned_cols=79 Identities=28% Similarity=0.526 Sum_probs=75.9
Q ss_pred ccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEee
Q 007417 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
..+|||+|||+.+++++|+++|.+||.|..+.+..++.+++++|||||+|.++++|..|+..|++..|.|+.+.|.+..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 4899999999999999999999999999999999998899999999999999999999999999999999999998764
No 113
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.92 E-value=5.6e-09 Score=108.18 Aligned_cols=74 Identities=28% Similarity=0.477 Sum_probs=66.8
Q ss_pred hccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccc
Q 007417 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCG 223 (604)
Q Consensus 145 ~~~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~ 223 (604)
.+...+++|+|-|||..+++++|..+|+.||+|..|+. |-..++.+||+|-+..+|++|+++|+...|.|+.|.
T Consensus 70 ~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 34557899999999999999999999999999999766 345689999999999999999999999999999887
No 114
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.89 E-value=2.8e-09 Score=97.04 Aligned_cols=78 Identities=26% Similarity=0.454 Sum_probs=73.5
Q ss_pred ccccccCCCCcccChhhHHhhhccc-CCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEe
Q 007417 328 VKTVFLDGVPPHWKENQIRDQIKGY-GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (604)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~F~~~-G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~ 405 (604)
...++|..+|..+.+..|..+|.++ |.|..+++.+++.||.++|||||+|++.+.|.-|-+.||++.|.++.|.|.+-
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 4678999999999999999999998 78888889899999999999999999999999999999999999999999875
No 115
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=1.8e-09 Score=104.96 Aligned_cols=86 Identities=16% Similarity=0.311 Sum_probs=80.7
Q ss_pred hccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEE
Q 007417 325 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (604)
Q Consensus 325 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~ 404 (604)
.++.+.|||..|.+-+++++|.-+|+.||.|..|.|++|..||.+-.||||+|++.+++.+|.-+|++..|.+++|+|.+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCC
Q 007417 405 RARLSN 410 (604)
Q Consensus 405 ~~~~~~ 410 (604)
..+.++
T Consensus 316 SQSVsk 321 (479)
T KOG0415|consen 316 SQSVSK 321 (479)
T ss_pred hhhhhh
Confidence 766655
No 116
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.87 E-value=3.4e-09 Score=78.96 Aligned_cols=55 Identities=29% Similarity=0.587 Sum_probs=49.0
Q ss_pred HHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCC
Q 007417 167 VRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (604)
Q Consensus 167 L~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (604)
|.++|++||+|..|.+.... +++|||+|.+.++|.+|+..||+..+.|++|+|..
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~ 55 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSY 55 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 68999999999999997652 69999999999999999999999999999998754
No 117
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.81 E-value=1.3e-09 Score=99.48 Aligned_cols=138 Identities=19% Similarity=0.281 Sum_probs=114.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCC
Q 007417 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (604)
Q Consensus 148 ~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (604)
+..+||||.||...++++-|.++|=+-|+|..|.|..++. +..+ ||||.|.++-++.-|+..+|+..|.++.+.+.
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~-- 82 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT-- 82 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhcc--
Confidence 3578999999999999999999999999999999987754 4556 99999999999999999999999999888654
Q ss_pred CCCCcceecc----cCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCC
Q 007417 228 EDNDTLFVGN----ICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKP 298 (604)
Q Consensus 228 ~~~~~l~v~n----lp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~ 298 (604)
++.++ |...++.+.+...|+..++ +..+++.++. .++++.++|+.+...-+.-.++......
T Consensus 83 -----~r~G~shapld~r~~~ei~~~v~s~a~p--~~~~R~~~~~--d~rnrn~~~~~~qr~~~~P~~~~~y~~l 148 (267)
T KOG4454|consen 83 -----LRCGNSHAPLDERVTEEILYEVFSQAGP--IEGVRIPTDN--DGRNRNFGFVTYQRLCAVPFALDLYQGL 148 (267)
T ss_pred -----cccCCCcchhhhhcchhhheeeecccCC--CCCccccccc--cCCccCccchhhhhhhcCcHHhhhhccc
Confidence 45555 6677889999999999998 8889988874 5888999998877665555555544443
No 118
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=4.4e-08 Score=100.76 Aligned_cols=145 Identities=23% Similarity=0.354 Sum_probs=110.7
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCC-C--CCCcc---eEEEEEeehHHHHHHHHhcC----CC
Q 007417 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFS-T--NRNKG---YAFVKFANKEHAKRALTEMK----NP 215 (604)
Q Consensus 146 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~-t--g~~kG---~afV~F~~~e~A~~Al~~l~----~~ 215 (604)
...-++.|||++||++++|+.|...|..||.|. |....... . -.++| |+|+.|+++.+++..|.+.. +.
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~ 333 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNY 333 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccce
Confidence 344678999999999999999999999999863 33332111 1 13566 99999999999988777642 22
Q ss_pred ee-------eCcccccC---------------CCCCCCcceecccCCCCcHHHHHHHHH-hcCCcceeEEEEeccccCCC
Q 007417 216 VI-------CGKRCGTA---------------PSEDNDTLFVGNICNTWTKEAIKQKLK-DYGVEGVENINLVSDIQHEG 272 (604)
Q Consensus 216 ~l-------~g~~i~v~---------------~~~~~~~l~v~nlp~~~te~~l~~~f~-~~G~~~v~~i~i~~~~~~~g 272 (604)
.| ..+.+.|. +-++.++|||++||..++.++|-.+|. -||. |.-+.|-.|+ .-+
T Consensus 334 yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGg--V~yaGIDtD~-k~K 410 (520)
T KOG0129|consen 334 YFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGG--VLYVGIDTDP-KLK 410 (520)
T ss_pred EEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCc--eEEEEeccCc-ccC
Confidence 22 12222221 224579999999999999999999998 7887 8888887774 367
Q ss_pred CcccEEEEEecCHHHHHHHHHH
Q 007417 273 LSRGFAFVMFSCHVDAMAAYKR 294 (604)
Q Consensus 273 ~skG~afV~f~~~e~A~~Al~~ 294 (604)
-.+|.|=|+|.+..+-.+||.+
T Consensus 411 YPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 411 YPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CCCCcceeeecccHHHHHHHhh
Confidence 8899999999999999999874
No 119
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.79 E-value=1.4e-08 Score=106.77 Aligned_cols=76 Identities=9% Similarity=0.142 Sum_probs=66.8
Q ss_pred cccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEE
Q 007417 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (604)
Q Consensus 329 ~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~ 404 (604)
+.|-+.|+|++++-+||-+||..|-.+..-.+++-.+.|.+.|-|.|-|++.++|.+|...|+++.|..+.|.|.+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 4789999999999999999999997665444445457799999999999999999999999999999999988764
No 120
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.79 E-value=1e-08 Score=93.42 Aligned_cols=77 Identities=27% Similarity=0.422 Sum_probs=71.2
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhcc-CCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccc
Q 007417 147 IKKEHEIFIGGLDRDATQEDVRKVFERI-GEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCG 223 (604)
Q Consensus 147 ~~~~~~vfV~nLp~~~te~dL~~~F~~~-G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~ 223 (604)
......++|..||.-+-+..|..+|.+| |.|..+++.+++.||.++|||||+|.+++.|.-|.+.||+.+|.++.|.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 3456789999999999999999999998 7899999999999999999999999999999999999999999988654
No 121
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=7e-08 Score=99.33 Aligned_cols=157 Identities=17% Similarity=0.302 Sum_probs=112.5
Q ss_pred CCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccc--cCCCCccc---EEEEEecCHHHHHHHHHHhCC--CCeec
Q 007417 230 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDI--QHEGLSRG---FAFVMFSCHVDAMAAYKRLQK--PDVVF 302 (604)
Q Consensus 230 ~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~--~~~g~skG---~afV~f~~~e~A~~Al~~l~~--~~~~~ 302 (604)
.++|||++||+.++++.|...|..||.. .+...... ...-..+| |+|+.|+++..+...+.+... ..+++
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs~---~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf 335 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGSV---KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYF 335 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccce---EeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEE
Confidence 5799999999999999999999999962 23322111 11223456 999999999998887775442 12221
Q ss_pred CCCCcceeec------c--cCCC-CCCChhhhccccccccCCCCcccChhhHHhhhc-ccCCEEEEEEeecCCCCCcceE
Q 007417 303 GHPERTVKVA------F--AEPL-REPDPEIMAHVKTVFLDGVPPHWKENQIRDQIK-GYGDVIRIVLARNMSTAKRKDY 372 (604)
Q Consensus 303 g~~~r~l~v~------~--a~~~-~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~-~~G~v~~v~i~~d~~~g~~~G~ 372 (604)
.....+++.. | ++.. .........+.++|||++||.-++.++|..+|. -||.|..+-|-.|++-.-++|-
T Consensus 336 ~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGa 415 (520)
T KOG0129|consen 336 KVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGA 415 (520)
T ss_pred EEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCc
Confidence 1011111111 0 0000 001223455678999999999999999999999 5999999999999888889999
Q ss_pred EEEEeCCHHHHHHHHHH
Q 007417 373 GFIDFSTHEAAVACINA 389 (604)
Q Consensus 373 afV~F~~~~~A~~A~~~ 389 (604)
|-|+|.+..+-.+||.+
T Consensus 416 GRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 416 GRVTFSNQQAYIKAISA 432 (520)
T ss_pred ceeeecccHHHHHHHhh
Confidence 99999999999999975
No 122
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.76 E-value=4.4e-10 Score=121.18 Aligned_cols=138 Identities=23% Similarity=0.302 Sum_probs=119.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCC
Q 007417 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (604)
Q Consensus 148 ~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (604)
+...++||+||+..+.+.+|...|..+|.+..+.+.....+++.+|+|||.|..++++.+|+.-.. ..+.|
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d-~~~~g-------- 735 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRD-SCFFG-------- 735 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhh-hhhhh--------
Confidence 456789999999999999999999999988888887667789999999999999999999998544 44444
Q ss_pred CCCCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCe
Q 007417 228 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV 300 (604)
Q Consensus 228 ~~~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~ 300 (604)
+..|+|.|.|+..|.+.++.++.++|. +++.+++.. ..|+.+|.++|.|.+..++.+++.......+
T Consensus 736 --K~~v~i~g~pf~gt~e~~k~l~~~~gn--~~~~~~vt~--r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~ 802 (881)
T KOG0128|consen 736 --KISVAISGPPFQGTKEELKSLASKTGN--VTSLRLVTV--RAGKPKGKARVDYNTEADASRKVASVDVAGK 802 (881)
T ss_pred --hhhhheeCCCCCCchHHHHhhccccCC--ccccchhhh--hccccccceeccCCCcchhhhhcccchhhhh
Confidence 347899999999999999999999998 888887776 3789999999999999999999876655444
No 123
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.73 E-value=9.7e-09 Score=96.07 Aligned_cols=164 Identities=20% Similarity=0.242 Sum_probs=119.0
Q ss_pred CCcceecccCCCCcHHH-H--HHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCeecCCCC
Q 007417 230 NDTLFVGNICNTWTKEA-I--KQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 306 (604)
Q Consensus 230 ~~~l~v~nlp~~~te~~-l--~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~g~~~ 306 (604)
--.+++.++-..+..+- | ...|..+-. +....++++. .+.-++++|+.|.......++...-+++.+ ..
T Consensus 96 vf~p~~~~~g~~v~pep~lp~~~~f~~~p~--L~ktk~v~~~--p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki----~~ 167 (290)
T KOG0226|consen 96 VFRPFQSNAGATVNPEPPLPLPVVFSEYPS--LVKTKLVRDR--PQPIRPEAFESFKASDALLKAETEKEKKKI----GK 167 (290)
T ss_pred cccccccccccccCCCCCCcchhhhccchh--hhhhhhhhcC--CCccCcccccCcchhhhhhhhccccccccc----cC
Confidence 34455555555444443 2 556665554 5555666653 566788999999877777776655555544 22
Q ss_pred cceeecccCCCCCCCh---hhhccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHH
Q 007417 307 RTVKVAFAEPLREPDP---EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 383 (604)
Q Consensus 307 r~l~v~~a~~~~~~~~---~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A 383 (604)
+.|++...+ ....+ +......+||++.|..+++++.|-..|.+|-.....+++++..|++++||+||.|.++.++
T Consensus 168 ~~VR~a~gt--swedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~ 245 (290)
T KOG0226|consen 168 PPVRLAAGT--SWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADY 245 (290)
T ss_pred cceeecccc--ccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHH
Confidence 334433222 22221 1223456899999999999999999999999888999999999999999999999999999
Q ss_pred HHHHHHhcCCeeCCCccEEE
Q 007417 384 VACINAINNKEFSDGNSKVK 403 (604)
Q Consensus 384 ~~A~~~lng~~~~g~~~~v~ 403 (604)
..|+..|||+.++.+.|++.
T Consensus 246 ~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 246 VRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred HHHHHhhcccccccchhHhh
Confidence 99999999999999988775
No 124
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.69 E-value=1.6e-08 Score=108.05 Aligned_cols=103 Identities=22% Similarity=0.350 Sum_probs=84.2
Q ss_pred hhccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccc
Q 007417 144 DRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCG 223 (604)
Q Consensus 144 ~~~~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~ 223 (604)
+.-.--++||||+.|+..+++.||+.+|+.||+|.+|.++. ++++|||++.+..+|.+||.+|++..+..+.|+
T Consensus 415 d~isV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Ik 488 (894)
T KOG0132|consen 415 DHISVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIK 488 (894)
T ss_pred cceeEeeeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeE
Confidence 34444689999999999999999999999999999999964 589999999999999999999999999999999
Q ss_pred cCCCCCC-----------CcceecccCCCCcHHHHHHHHH
Q 007417 224 TAPSEDN-----------DTLFVGNICNTWTKEAIKQKLK 252 (604)
Q Consensus 224 v~~~~~~-----------~~l~v~nlp~~~te~~l~~~f~ 252 (604)
|.|+... ..|=|.-||+..-..+|+.++.
T Consensus 489 i~Wa~g~G~kse~k~~wD~~lGVt~IP~~kLt~dl~~~~e 528 (894)
T KOG0132|consen 489 IAWAVGKGPKSEYKDYWDVELGVTYIPWEKLTDDLEAWCE 528 (894)
T ss_pred EeeeccCCcchhhhhhhhcccCeeEeehHhcCHHHHHhhh
Confidence 8887431 2334566677655555655554
No 125
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.67 E-value=2.8e-08 Score=102.26 Aligned_cols=81 Identities=15% Similarity=0.427 Sum_probs=75.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCCC
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~ 228 (604)
-.+.|||.+|+..+.-.||+.+|++||+|+-++|+++..+--.+-|+||++.+.++|.+||..|+.+.|+|+.|.|..++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 46799999999999999999999999999999999998777788899999999999999999999999999999997765
Q ss_pred C
Q 007417 229 D 229 (604)
Q Consensus 229 ~ 229 (604)
+
T Consensus 484 N 484 (940)
T KOG4661|consen 484 N 484 (940)
T ss_pred c
Confidence 3
No 126
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.65 E-value=2.1e-08 Score=108.94 Aligned_cols=163 Identities=21% Similarity=0.382 Sum_probs=135.4
Q ss_pred hhccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccc
Q 007417 144 DRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCG 223 (604)
Q Consensus 144 ~~~~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~ 223 (604)
..+...++|||++||+..+++.+|+-.|..+|.|.+|.|.+- .-+.-.-|+||.|.+...+-.|+..+.+..|..-.++
T Consensus 366 ~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP-~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r 444 (975)
T KOG0112|consen 366 LDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTP-HIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHR 444 (975)
T ss_pred ccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccC-CCCcccchhhhhhhccccCcccchhhcCCccccCccc
Confidence 344457899999999999999999999999999999999554 2355677999999999999999998888777654444
Q ss_pred cC----CCCCCCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCC
Q 007417 224 TA----PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPD 299 (604)
Q Consensus 224 v~----~~~~~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~ 299 (604)
+. .+..++.+|+++|..-+....|...|..||. |..|.+-.. ..|++|.|.+...+..|+..|.+..
T Consensus 445 ~glG~~kst~ttr~~sgglg~w~p~~~l~r~fd~fGp--ir~Idy~hg-------q~yayi~yes~~~aq~a~~~~rgap 515 (975)
T KOG0112|consen 445 IGLGQPKSTPTTRLQSGGLGPWSPVSRLNREFDRFGP--IRIIDYRHG-------QPYAYIQYESPPAAQAATHDMRGAP 515 (975)
T ss_pred ccccccccccceeeccCCCCCCChHHHHHHHhhccCc--ceeeecccC-------CcceeeecccCccchhhHHHHhcCc
Confidence 43 4456899999999999999999999999998 777766432 4599999999999999999998876
Q ss_pred eecCCCCcceeecccCCCC
Q 007417 300 VVFGHPERTVKVAFAEPLR 318 (604)
Q Consensus 300 ~~~g~~~r~l~v~~a~~~~ 318 (604)
+ +...+.++|.++.+..
T Consensus 516 ~--G~P~~r~rvdla~~~~ 532 (975)
T KOG0112|consen 516 L--GGPPRRLRVDLASPPG 532 (975)
T ss_pred C--CCCCcccccccccCCC
Confidence 5 5567889999987543
No 127
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.64 E-value=8.6e-06 Score=87.67 Aligned_cols=108 Identities=23% Similarity=0.350 Sum_probs=84.6
Q ss_pred CCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCeecCCCCcce
Q 007417 230 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTV 309 (604)
Q Consensus 230 ~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~g~~~r~l 309 (604)
++||||+.|+..+++.+|..+|+.||+ |.+|.++.. +++|||.+....+|.+|+.+|++..+ ..+.|
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGe--iqSi~li~~-------R~cAfI~M~~RqdA~kalqkl~n~kv----~~k~I 487 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGE--IQSIILIPP-------RGCAFIKMVRRQDAEKALQKLSNVKV----ADKTI 487 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhccc--ceeEeeccC-------CceeEEEEeehhHHHHHHHHHhcccc----cceee
Confidence 689999999999999999999999999 999998865 79999999999999999999997777 57899
Q ss_pred eecccCCCCCCChhhhc-cccccccCCCCcccChhhHHhhhcc
Q 007417 310 KVAFAEPLREPDPEIMA-HVKTVFLDGVPPHWKENQIRDQIKG 351 (604)
Q Consensus 310 ~v~~a~~~~~~~~~~~~-~~~~l~v~nLp~~~t~~~l~~~F~~ 351 (604)
++.|+..+-... +... -...|-|.-|||..-..+|+.++..
T Consensus 488 ki~Wa~g~G~ks-e~k~~wD~~lGVt~IP~~kLt~dl~~~~eg 529 (894)
T KOG0132|consen 488 KIAWAVGKGPKS-EYKDYWDVELGVTYIPWEKLTDDLEAWCEG 529 (894)
T ss_pred EEeeeccCCcch-hhhhhhhcccCeeEeehHhcCHHHHHhhhh
Confidence 999997654433 1100 0123456667876444447666653
No 128
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.61 E-value=2.6e-08 Score=99.51 Aligned_cols=82 Identities=23% Similarity=0.429 Sum_probs=72.2
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEee
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
..++|||++|+|.++++.|+++|.+||+|.+|.+++++.+++++||+||+|.+++...++|.. .-+.|.|+.|.+.-++
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 357999999999999999999999999999999999999999999999999999999988753 4467889887777655
Q ss_pred ecC
Q 007417 407 RLS 409 (604)
Q Consensus 407 ~~~ 409 (604)
...
T Consensus 84 ~r~ 86 (311)
T KOG4205|consen 84 SRE 86 (311)
T ss_pred Ccc
Confidence 543
No 129
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.57 E-value=1e-07 Score=88.49 Aligned_cols=79 Identities=19% Similarity=0.376 Sum_probs=71.7
Q ss_pred cccccCCCCcccChhhHHh----hhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEE
Q 007417 329 KTVFLDGVPPHWKENQIRD----QIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (604)
Q Consensus 329 ~~l~v~nLp~~~t~~~l~~----~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~ 404 (604)
.+|||.||+..+..++|+. +|++||.|..|.... +.+.||-|||.|.+.+.|..|+.+|+|..|-|+.+++.+
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 4999999999999999888 999999999988865 467899999999999999999999999999999999998
Q ss_pred eeecCC
Q 007417 405 RARLSN 410 (604)
Q Consensus 405 ~~~~~~ 410 (604)
+...+.
T Consensus 87 A~s~sd 92 (221)
T KOG4206|consen 87 AKSDSD 92 (221)
T ss_pred ccCccc
Confidence 766543
No 130
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.52 E-value=1.5e-07 Score=92.08 Aligned_cols=79 Identities=29% Similarity=0.492 Sum_probs=68.4
Q ss_pred hccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHh-cCCCeeeCcccc
Q 007417 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE-MKNPVICGKRCG 223 (604)
Q Consensus 145 ~~~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~-l~~~~l~g~~i~ 223 (604)
-+.....||||++|-..+++.+|+++|-+||+|..|++... +++|||+|.+.++|+.|..+ ++..+|.|.+|.
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~ 296 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLK 296 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEE
Confidence 34446789999999999999999999999999999999754 66999999999999999887 466678999998
Q ss_pred cCCCCC
Q 007417 224 TAPSED 229 (604)
Q Consensus 224 v~~~~~ 229 (604)
|.+...
T Consensus 297 i~Wg~~ 302 (377)
T KOG0153|consen 297 IKWGRP 302 (377)
T ss_pred EEeCCC
Confidence 887655
No 131
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.50 E-value=1.4e-07 Score=97.26 Aligned_cols=80 Identities=19% Similarity=0.410 Sum_probs=73.8
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEee
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
..+.|||.+|...+-..+|+.+|++||.|+.++|+.+..+-..++|+||++.+.++|.+||..|+.++|.|+.|.|.-+.
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 35689999999999999999999999999999999987777789999999999999999999999999999999988543
No 132
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.43 E-value=8e-06 Score=81.01 Aligned_cols=82 Identities=26% Similarity=0.303 Sum_probs=73.5
Q ss_pred ccccccCCCCcccChhhHHhhhcccCCEE--------EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCc
Q 007417 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVI--------RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGN 399 (604)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~--------~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~ 399 (604)
..+|||.+||..++.++|.++|.++|.|. .|.|-+++.|++++|-|.|.|++...|++||..++++.|.+..
T Consensus 66 ~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~ 145 (351)
T KOG1995|consen 66 NETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNT 145 (351)
T ss_pred cccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCCC
Confidence 46899999999999999999999999883 4778889999999999999999999999999999999999988
Q ss_pred cEEEEeeecC
Q 007417 400 SKVKLRARLS 409 (604)
Q Consensus 400 ~~v~~~~~~~ 409 (604)
|+|.++...+
T Consensus 146 ikvs~a~~r~ 155 (351)
T KOG1995|consen 146 IKVSLAERRT 155 (351)
T ss_pred chhhhhhhcc
Confidence 8887654443
No 133
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.42 E-value=6.5e-08 Score=95.68 Aligned_cols=207 Identities=14% Similarity=0.159 Sum_probs=125.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCC---CCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCC
Q 007417 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFS---TNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (604)
Q Consensus 150 ~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~---tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (604)
...|.|.||.+.+|.++++.+|.-.|+|.+++|+.... .......|||.|.+...+..|-. |.++++.++.|.|.+
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p 85 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRP 85 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEe
Confidence 35899999999999999999999999999999976432 23467899999999998887765 677777776654433
Q ss_pred CCCCCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCeecCCCC
Q 007417 227 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 306 (604)
Q Consensus 227 ~~~~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~g~~~ 306 (604)
... .+-+... +|..++...+.--.+..+ | |.|.+.. +. ..++..
T Consensus 86 ~~~-----------~~~p~r~--af~~l~~~navprll~pd----g-------~Lp~~~~-----lt-------~~nh~p 129 (479)
T KOG4676|consen 86 YGD-----------EVIPDRF--AFVELADQNAVPRLLPPD----G-------VLPGDRP-----LT-------KINHSP 129 (479)
T ss_pred cCC-----------CCCccHH--HHHhcCcccccccccCCC----C-------ccCCCCc-----cc-------cccCCc
Confidence 221 1111111 444443211111111111 0 1111000 00 000000
Q ss_pred cceeecccCCCCCCChhhhccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHH
Q 007417 307 RTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386 (604)
Q Consensus 307 r~l~v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A 386 (604)
..|....+.|.......+..-..+++|.+|+..+...++-+.|..+|.|....+.- +...-+|.|+|........|
T Consensus 130 ~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as----k~~s~~c~~sf~~qts~~ha 205 (479)
T KOG4676|consen 130 NAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPESGESFERKGEVSYAHTAS----KSRSSSCSHSFRKQTSSKHA 205 (479)
T ss_pred cceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc----cCCCcchhhhHhhhhhHHHH
Confidence 11111111111111111122236899999999999999999999999998777643 23345788999999999998
Q ss_pred HHHhcCCeeCCC
Q 007417 387 INAINNKEFSDG 398 (604)
Q Consensus 387 ~~~lng~~~~g~ 398 (604)
+. ++|.++.-.
T Consensus 206 lr-~~gre~k~q 216 (479)
T KOG4676|consen 206 LR-SHGRERKRQ 216 (479)
T ss_pred HH-hcchhhhhh
Confidence 87 677777643
No 134
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.39 E-value=5.8e-07 Score=86.39 Aligned_cols=78 Identities=21% Similarity=0.367 Sum_probs=71.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCC
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (604)
...+|.|.|||+.++++||+++|..||.+..+.|..++ +|++.|+|-|.|...++|.+|++.+++..|.|+.+.+...
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 45789999999999999999999999999999888875 5999999999999999999999999999999998876543
No 135
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.38 E-value=5.5e-07 Score=88.25 Aligned_cols=74 Identities=27% Similarity=0.413 Sum_probs=65.3
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh-cCCeeCCCccEEEEe
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI-NNKEFSDGNSKVKLR 405 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~l-ng~~~~g~~~~v~~~ 405 (604)
..++|||++|-..+++.+|+++|.+||.|..+.++.. +++|||+|.+.++|+.|.+++ |...|+|.+|.|.|.
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg 300 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWG 300 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeC
Confidence 4579999999999999999999999999999999876 569999999999999887654 666789999999886
Q ss_pred e
Q 007417 406 A 406 (604)
Q Consensus 406 ~ 406 (604)
.
T Consensus 301 ~ 301 (377)
T KOG0153|consen 301 R 301 (377)
T ss_pred C
Confidence 3
No 136
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.38 E-value=3.2e-07 Score=86.08 Aligned_cols=156 Identities=19% Similarity=0.299 Sum_probs=119.0
Q ss_pred CCEEEEcCCCCCCCHHH-H--HHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCccccc--
Q 007417 150 EHEIFIGGLDRDATQED-V--RKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT-- 224 (604)
Q Consensus 150 ~~~vfV~nLp~~~te~d-L--~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v-- 224 (604)
-..+|+.|+-.++..+- | ...|+-+-.+....++++. -+..++++|+.|.....-.++-..-++..+.-..|++
T Consensus 96 vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~ 174 (290)
T KOG0226|consen 96 VFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAA 174 (290)
T ss_pred cccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcceeecc
Confidence 34567777766665544 3 5666666556566666653 3677999999999888777776655555555444443
Q ss_pred ----------CCCCCCCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHH
Q 007417 225 ----------APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKR 294 (604)
Q Consensus 225 ----------~~~~~~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~ 294 (604)
.+.....+||++.|..+++.+.|...|.+|-. ....+++++ ..+++++||+||.|.+.+++..|+++
T Consensus 175 gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfps--f~~akviRd-kRTgKSkgygfVSf~~pad~~rAmre 251 (290)
T KOG0226|consen 175 GTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPS--FQKAKVIRD-KRTGKSKGYGFVSFRDPADYVRAMRE 251 (290)
T ss_pred ccccCCcccccCccccceeecccccccccHHHHHHHHHhccc--hhhcccccc-ccccccccceeeeecCHHHHHHHHHh
Confidence 34456789999999999999999999999987 788889998 57999999999999999999999999
Q ss_pred hCCCCeecCCCCcceeecc
Q 007417 295 LQKPDVVFGHPERTVKVAF 313 (604)
Q Consensus 295 l~~~~~~~g~~~r~l~v~~ 313 (604)
|+++.+ ..|.|.+..
T Consensus 252 m~gkyV----gsrpiklRk 266 (290)
T KOG0226|consen 252 MNGKYV----GSRPIKLRK 266 (290)
T ss_pred hccccc----ccchhHhhh
Confidence 999887 456665543
No 137
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.37 E-value=2.4e-06 Score=93.45 Aligned_cols=14 Identities=50% Similarity=0.517 Sum_probs=6.1
Q ss_pred CCcccEEEEEecCH
Q 007417 272 GLSRGFAFVMFSCH 285 (604)
Q Consensus 272 g~skG~afV~f~~~ 285 (604)
++.++|+--.|+++
T Consensus 899 g~q~~~~g~kfsdh 912 (1282)
T KOG0921|consen 899 GTQRKFAGNKFSDH 912 (1282)
T ss_pred cchhhccccccccc
Confidence 34444444444443
No 138
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.36 E-value=4.3e-07 Score=98.98 Aligned_cols=155 Identities=19% Similarity=0.305 Sum_probs=125.3
Q ss_pred CCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCeecCCCCcce
Q 007417 230 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTV 309 (604)
Q Consensus 230 ~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~g~~~r~l 309 (604)
+++||++||+..+++.+|+..|..+|. |.+|.|.... .++-.-|+||.|.+...+-.|...+.+..|..+ .+
T Consensus 372 trTLf~Gnl~~kl~eseiR~af~e~gk--ve~VDiKtP~--~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g----~~ 443 (975)
T KOG0112|consen 372 TRTLFLGNLDSKLTESEIRPAFDESGK--VEEVDIKTPH--IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNG----TH 443 (975)
T ss_pred hhhhhhcCcccchhhhhhhhhhhhhcc--ccccccccCC--CCcccchhhhhhhccccCcccchhhcCCccccC----cc
Confidence 789999999999999999999999998 8888887653 445566899999999999999998888877433 33
Q ss_pred eecccCCCCCCChhhhccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 007417 310 KVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389 (604)
Q Consensus 310 ~v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~ 389 (604)
++.+..++ ....++++|++|+.++....|...|..||.|..|.+-. | .-|++|.|++...|+.|+..
T Consensus 444 r~glG~~k-------st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h----g--q~yayi~yes~~~aq~a~~~ 510 (975)
T KOG0112|consen 444 RIGLGQPK-------STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH----G--QPYAYIQYESPPAAQAATHD 510 (975)
T ss_pred cccccccc-------cccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc----C--CcceeeecccCccchhhHHH
Confidence 33333321 12357899999999999999999999999999877632 2 34899999999999999999
Q ss_pred hcCCeeCCCcc--EEEEe
Q 007417 390 INNKEFSDGNS--KVKLR 405 (604)
Q Consensus 390 lng~~~~g~~~--~v~~~ 405 (604)
|.|..|++..- .|.++
T Consensus 511 ~rgap~G~P~~r~rvdla 528 (975)
T KOG0112|consen 511 MRGAPLGGPPRRLRVDLA 528 (975)
T ss_pred HhcCcCCCCCcccccccc
Confidence 99999988544 44443
No 139
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.35 E-value=3.4e-06 Score=81.19 Aligned_cols=80 Identities=10% Similarity=0.232 Sum_probs=73.4
Q ss_pred ccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEeee
Q 007417 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407 (604)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~~ 407 (604)
..+|.|.|||..+++.+|+++|..||.++.+-|.+++ .|++.|.|-|.|...++|.+|++.+|+..+.|+.+.+.+...
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 4689999999999999999999999999999888884 699999999999999999999999999999999988887544
Q ss_pred c
Q 007417 408 L 408 (604)
Q Consensus 408 ~ 408 (604)
.
T Consensus 162 ~ 162 (243)
T KOG0533|consen 162 P 162 (243)
T ss_pred c
Confidence 4
No 140
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.35 E-value=3.1e-07 Score=84.19 Aligned_cols=138 Identities=16% Similarity=0.249 Sum_probs=111.7
Q ss_pred CCCCCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCeecCCCC
Q 007417 227 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 306 (604)
Q Consensus 227 ~~~~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~g~~~ 306 (604)
+...++|||.|+...++++-|.++|-+.|+ |..+.|.... .+..+ ||||.|.++....-|+.-+++..+. +
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGP--V~kv~ip~~~--d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~----~ 76 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGP--VYKVGIPSGQ--DQEQK-FAYVFFPNENSVQLAGQLENGDDLE----E 76 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCc--eEEEeCCCCc--cCCCc-eeeeecccccchhhhhhhcccchhc----c
Confidence 345689999999999999999999999999 9999988774 45555 9999999999999999999988874 3
Q ss_pred cceeecccCCCCCCChhhhccccccccCC----CCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHH
Q 007417 307 RTVKVAFAEPLREPDPEIMAHVKTVFLDG----VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEA 382 (604)
Q Consensus 307 r~l~v~~a~~~~~~~~~~~~~~~~l~v~n----Lp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~ 382 (604)
+.+.+ +++.++ |...++++.+...|+.-+.+..+++..+.+ ++++-++|+.+.-.-+
T Consensus 77 ~e~q~------------------~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~ 137 (267)
T KOG4454|consen 77 DEEQR------------------TLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCA 137 (267)
T ss_pred chhhc------------------ccccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhc
Confidence 44433 455555 667788999999999999999999988865 8888899998766666
Q ss_pred HHHHHHHhcC
Q 007417 383 AVACINAINN 392 (604)
Q Consensus 383 A~~A~~~lng 392 (604)
.-.++....+
T Consensus 138 ~P~~~~~y~~ 147 (267)
T KOG4454|consen 138 VPFALDLYQG 147 (267)
T ss_pred CcHHhhhhcc
Confidence 5566554443
No 141
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.34 E-value=5.1e-07 Score=87.11 Aligned_cols=81 Identities=22% Similarity=0.332 Sum_probs=75.0
Q ss_pred hccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCccccc
Q 007417 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (604)
Q Consensus 145 ~~~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v 224 (604)
++..+...|||+|+.+.+|.++|..+|+.||.|..|.|.+++.++.++|||||+|.+.+.+..+|. |++..|.++.+.+
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 455578999999999999999999999999999999999999999999999999999999999999 9999999998875
Q ss_pred CC
Q 007417 225 AP 226 (604)
Q Consensus 225 ~~ 226 (604)
..
T Consensus 175 t~ 176 (231)
T KOG4209|consen 175 TL 176 (231)
T ss_pred ee
Confidence 54
No 142
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.29 E-value=2.1e-05 Score=76.92 Aligned_cols=76 Identities=9% Similarity=0.184 Sum_probs=66.8
Q ss_pred ccccccCCCCcccChhhHHhhhcccC--CEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEE
Q 007417 328 VKTVFLDGVPPHWKENQIRDQIKGYG--DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 403 (604)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~F~~~G--~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~ 403 (604)
..++||+||-|++|+++|.+.....| .+.+++++.++.+|.++|||+|...+..+.++.++-|--+.|.|..-.|.
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 35899999999999999998887766 56778889999999999999999999999999999999999998765553
No 143
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.29 E-value=2.1e-07 Score=92.89 Aligned_cols=152 Identities=18% Similarity=0.265 Sum_probs=119.3
Q ss_pred CcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCeecCCCCccee
Q 007417 231 DTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVK 310 (604)
Q Consensus 231 ~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~g~~~r~l~ 310 (604)
..||++||.+.++..+|..+|...-. ....-.++. .||+||.+.+...|.+|++.+++..-+ .+.++.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~-~~~g~fl~k--------~gyafvd~pdq~wa~kaie~~sgk~el---qGkr~e 69 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKI-PGSGQFLVK--------SGYAFVDCPDQQWANKAIETLSGKVEL---QGKRQE 69 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccC-CCCcceeee--------cceeeccCCchhhhhhhHHhhchhhhh---cCceee
Confidence 46899999999999999999987532 122223332 479999999999999999999987655 356777
Q ss_pred ecccCCCCCCChhhhccccccccCCCCcccChhhHHhhhcccCCEEEEEEe-ecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 007417 311 VAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLA-RNMSTAKRKDYGFIDFSTHEAAVACINA 389 (604)
Q Consensus 311 v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~-~d~~~g~~~G~afV~F~~~~~A~~A~~~ 389 (604)
+....+++. .++++.|+|+|+...|+.|..+..+||.|..|..+ .+.++ -..-|+|.+.+.+..||..
T Consensus 70 ~~~sv~kkq-------rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~et----avvnvty~~~~~~~~ai~k 138 (584)
T KOG2193|consen 70 VEHSVPKKQ-------RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET----AVVNVTYSAQQQHRQAIHK 138 (584)
T ss_pred ccchhhHHH-------HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH----HHHHHHHHHHHHHHHHHHh
Confidence 766665433 34679999999999999999999999999888663 23222 2234788999999999999
Q ss_pred hcCCeeCCCccEEEEe
Q 007417 390 INNKEFSDGNSKVKLR 405 (604)
Q Consensus 390 lng~~~~g~~~~v~~~ 405 (604)
|||..+....+++.+-
T Consensus 139 l~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 139 LNGPQLENQHLKVGYI 154 (584)
T ss_pred hcchHhhhhhhhcccC
Confidence 9999999988877764
No 144
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.28 E-value=2.8e-06 Score=69.89 Aligned_cols=68 Identities=24% Similarity=0.318 Sum_probs=60.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcc--CCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeee
Q 007417 151 HEIFIGGLDRDATQEDVRKVFERI--GEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVIC 218 (604)
Q Consensus 151 ~~vfV~nLp~~~te~dL~~~F~~~--G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~ 218 (604)
.||.|+|||...|.++|.+++... |...-+-++.|..++.+.|||||.|.+++.|.+..+.+++..+.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~ 71 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWP 71 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccc
Confidence 699999999999999999988763 56777888999999999999999999999999999998887653
No 145
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.28 E-value=1.1e-06 Score=91.29 Aligned_cols=75 Identities=24% Similarity=0.418 Sum_probs=61.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCccccc
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v 224 (604)
...+|||+|||+++|..+|+++|++||.|+...|..-...+++..||||+|.+.++++.||.+ +...|.+++|.|
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~V 361 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNV 361 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEE
Confidence 456799999999999999999999999999998865432345459999999999999999996 455666666543
No 146
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.27 E-value=2.7e-06 Score=82.13 Aligned_cols=80 Identities=15% Similarity=0.304 Sum_probs=74.9
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEee
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
..+.+||+|+.+.+|.+++...|+.||.|..+.|+.++.++.++||+||+|.+.+.+..|+. ||+..|.++.+.|.+..
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~r 178 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLKR 178 (231)
T ss_pred CCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeeee
Confidence 45789999999999999999999999999999999999999999999999999999999998 99999999999998764
Q ss_pred e
Q 007417 407 R 407 (604)
Q Consensus 407 ~ 407 (604)
.
T Consensus 179 ~ 179 (231)
T KOG4209|consen 179 T 179 (231)
T ss_pred e
Confidence 4
No 147
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.09 E-value=1.4e-05 Score=73.76 Aligned_cols=80 Identities=24% Similarity=0.418 Sum_probs=62.8
Q ss_pred ccccccCCCCcccChhhHHhhhcccCCEEEEEEe-ecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeC---CCccEEE
Q 007417 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLA-RNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS---DGNSKVK 403 (604)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~-~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~---g~~~~v~ 403 (604)
.++|||.+||.++...+|..+|+.|--.+.+.|- .++.....+=+|||+|.+++.|.+|+.+|||..|+ +..++|+
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 5899999999999999999999998555555442 33333334579999999999999999999999986 4566666
Q ss_pred Eeee
Q 007417 404 LRAR 407 (604)
Q Consensus 404 ~~~~ 407 (604)
++.+
T Consensus 114 lAKS 117 (284)
T KOG1457|consen 114 LAKS 117 (284)
T ss_pred ehhc
Confidence 6544
No 148
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.04 E-value=1.9e-05 Score=64.92 Aligned_cols=69 Identities=19% Similarity=0.401 Sum_probs=62.7
Q ss_pred cccccCCCCcccChhhHHhhhcc--cCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCC
Q 007417 329 KTVFLDGVPPHWKENQIRDQIKG--YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397 (604)
Q Consensus 329 ~~l~v~nLp~~~t~~~l~~~F~~--~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g 397 (604)
++|.|+|||...|.++|.+++.. .|....+.++.|..+..+.|||||-|.+++.|.+-...++|+.+..
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~ 72 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPN 72 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCcccc
Confidence 68999999999999999988876 3777889999999999999999999999999999999999998763
No 149
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.02 E-value=4.9e-06 Score=78.42 Aligned_cols=74 Identities=24% Similarity=0.334 Sum_probs=63.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCC--------CCCc----ceEEEEEeehHHHHHHHHhcCCCe
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFST--------NRNK----GYAFVKFANKEHAKRALTEMKNPV 216 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~t--------g~~k----G~afV~F~~~e~A~~Al~~l~~~~ 216 (604)
....||+.+||+.....-|+++|++||.|-.|.|.....+ |.+. .-++|+|.+...|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 6789999999999999999999999999999998766544 2222 237899999999999999999999
Q ss_pred eeCccc
Q 007417 217 ICGKRC 222 (604)
Q Consensus 217 l~g~~i 222 (604)
|.|+.-
T Consensus 153 Iggkk~ 158 (278)
T KOG3152|consen 153 IGGKKK 158 (278)
T ss_pred cCCCCC
Confidence 999853
No 150
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.88 E-value=2.6e-05 Score=83.11 Aligned_cols=79 Identities=20% Similarity=0.403 Sum_probs=69.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCC---CCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccC
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFS---TNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~---tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (604)
....|||+||++.++++.|-..|..||+|..|+|+--+. ..+.+.++||.|-+..+|++|++.|++..+.+..+++-
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~g 252 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLG 252 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeec
Confidence 356899999999999999999999999999999975432 24668899999999999999999999999988888776
Q ss_pred CC
Q 007417 226 PS 227 (604)
Q Consensus 226 ~~ 227 (604)
+.
T Consensus 253 Wg 254 (877)
T KOG0151|consen 253 WG 254 (877)
T ss_pred cc
Confidence 65
No 151
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.88 E-value=5e-06 Score=86.66 Aligned_cols=71 Identities=17% Similarity=0.309 Sum_probs=64.0
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEE
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 402 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v 402 (604)
....|+|-|||..++.++|+.+|+.||+|..|+.- -..+|.+||+|-+..+|++|+++||+++|.|+.+++
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t-----~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~ 144 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET-----PNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKR 144 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc-----cccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcC
Confidence 34689999999999999999999999999996553 345899999999999999999999999999998873
No 152
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.82 E-value=2e-05 Score=78.17 Aligned_cols=82 Identities=21% Similarity=0.329 Sum_probs=73.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeE--------EEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeC
Q 007417 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVI--------EVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICG 219 (604)
Q Consensus 148 ~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~--------~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g 219 (604)
....+|||.+||..+++++|.++|.+||.|. .|.|.+++.|++.|+-|.|.|.+...|+.|+..+++..+++
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 3578999999999999999999999999883 37788999999999999999999999999999999999999
Q ss_pred cccccCCCCC
Q 007417 220 KRCGTAPSED 229 (604)
Q Consensus 220 ~~i~v~~~~~ 229 (604)
..|.|..+..
T Consensus 144 n~ikvs~a~~ 153 (351)
T KOG1995|consen 144 NTIKVSLAER 153 (351)
T ss_pred CCchhhhhhh
Confidence 8887766544
No 153
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.81 E-value=3.3e-05 Score=75.95 Aligned_cols=78 Identities=15% Similarity=0.298 Sum_probs=70.0
Q ss_pred cccccCCCCcccChhhHHhhhcccCCEE--------EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCcc
Q 007417 329 KTVFLDGVPPHWKENQIRDQIKGYGDVI--------RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNS 400 (604)
Q Consensus 329 ~~l~v~nLp~~~t~~~l~~~F~~~G~v~--------~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~ 400 (604)
+.|||.|||.++|.+++.++|++||.|. .|+|.++.. |..+|-|++.|--.+++.-|+.-|++..|.|+.|
T Consensus 135 t~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~ 213 (382)
T KOG1548|consen 135 TSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELRGKKL 213 (382)
T ss_pred ceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccccCcEE
Confidence 5699999999999999999999999873 478888754 9999999999999999999999999999999999
Q ss_pred EEEEeee
Q 007417 401 KVKLRAR 407 (604)
Q Consensus 401 ~v~~~~~ 407 (604)
+|..+..
T Consensus 214 rVerAkf 220 (382)
T KOG1548|consen 214 RVERAKF 220 (382)
T ss_pred EEehhhh
Confidence 9886533
No 154
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.79 E-value=5.7e-05 Score=59.10 Aligned_cols=69 Identities=22% Similarity=0.445 Sum_probs=47.3
Q ss_pred CEEEEcCCCCCCCHHHHH----HHhhccC-CeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccC
Q 007417 151 HEIFIGGLDRDATQEDVR----KVFERIG-EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (604)
Q Consensus 151 ~~vfV~nLp~~~te~dL~----~~F~~~G-~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (604)
..|+|.|||-+.+...|+ .++..|| .|..| +.+.|.|.|.+++.|.+|++.|++..+.|.+|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 469999999999887766 4555676 67655 14679999999999999999999999999999887
Q ss_pred CCCC
Q 007417 226 PSED 229 (604)
Q Consensus 226 ~~~~ 229 (604)
....
T Consensus 73 ~~~~ 76 (90)
T PF11608_consen 73 FSPK 76 (90)
T ss_dssp SS--
T ss_pred EcCC
Confidence 6643
No 155
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.74 E-value=7.2e-06 Score=82.16 Aligned_cols=138 Identities=25% Similarity=0.354 Sum_probs=107.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCC-eEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCC-eeeCcccccCCCC
Q 007417 151 HEIFIGGLDRDATQEDVRKVFERIGE-VIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNP-VICGKRCGTAPSE 228 (604)
Q Consensus 151 ~~vfV~nLp~~~te~dL~~~F~~~G~-V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~-~l~g~~i~v~~~~ 228 (604)
..+|++||.+.++..+|..+|...-. +..-.+ ...|||||.+.+...|.+|++.+++. .+.|+++.+..+-
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl-------~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL-------VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCccee-------eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 46899999999999999999976410 111111 23689999999999999999999876 5899999886654
Q ss_pred ----CCCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCee
Q 007417 229 ----DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVV 301 (604)
Q Consensus 229 ----~~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~ 301 (604)
..+.+-|+|+|+...++.|..+...||. +..|..+..... .--.-|+|.+.+.+..|+.+|++..+.
T Consensus 75 ~kkqrsrk~Qirnippql~wevld~Ll~qyg~--ve~~eqvnt~~e----tavvnvty~~~~~~~~ai~kl~g~Q~e 145 (584)
T KOG2193|consen 75 PKKQRSRKIQIRNIPPQLQWEVLDSLLAQYGT--VENCEQVNTDSE----TAVVNVTYSAQQQHRQAIHKLNGPQLE 145 (584)
T ss_pred hHHHHhhhhhHhcCCHHHHHHHHHHHHhccCC--HhHhhhhccchH----HHHHHHHHHHHHHHHHHHHhhcchHhh
Confidence 3678999999999999999999999998 777765332111 111236788899999999999998773
No 156
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=97.71 E-value=0.00032 Score=68.91 Aligned_cols=6 Identities=0% Similarity=-0.125 Sum_probs=2.4
Q ss_pred CCCCcH
Q 007417 239 CNTWTK 244 (604)
Q Consensus 239 p~~~te 244 (604)
|.++++
T Consensus 158 p~Nin~ 163 (465)
T KOG3973|consen 158 PGNINE 163 (465)
T ss_pred CCCchH
Confidence 334443
No 157
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.60 E-value=8.8e-05 Score=79.25 Aligned_cols=84 Identities=11% Similarity=0.251 Sum_probs=74.1
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecC---CCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEE
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNM---STAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 403 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~---~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~ 403 (604)
.++.|||+||++.++++.|-..|..||.|..++|+.-+ +..+.+-++||-|-+..+|.+|+..|+|..+....+++-
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~g 252 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLG 252 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeec
Confidence 46889999999999999999999999999999987543 346678899999999999999999999999999999998
Q ss_pred EeeecCC
Q 007417 404 LRARLSN 410 (604)
Q Consensus 404 ~~~~~~~ 410 (604)
|..+..-
T Consensus 253 Wgk~V~i 259 (877)
T KOG0151|consen 253 WGKAVPI 259 (877)
T ss_pred ccccccc
Confidence 8755543
No 158
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.57 E-value=9.4e-05 Score=62.38 Aligned_cols=69 Identities=16% Similarity=0.359 Sum_probs=43.8
Q ss_pred cccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCC-----eeCCCccEEE
Q 007417 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK-----EFSDGNSKVK 403 (604)
Q Consensus 329 ~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~-----~~~g~~~~v~ 403 (604)
..|+|.+++..++.++|+++|++||.|.+|.+.+. .-.|+|.|.+++.|+.|+.++.-. .|.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 35788899999999999999999999999998765 236999999999999999887644 4555554444
No 159
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.47 E-value=7.5e-05 Score=74.74 Aligned_cols=80 Identities=30% Similarity=0.506 Sum_probs=72.3
Q ss_pred CCCEEE-EcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCC
Q 007417 149 KEHEIF-IGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (604)
Q Consensus 149 ~~~~vf-V~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (604)
...++| |.||++.+++++|+.+|..+|.|..+++..+..++.++|||||.|.+...+..++.. +...+.++.+.+...
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEED 261 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccC
Confidence 455666 999999999999999999999999999999999999999999999999999999987 778888888887665
Q ss_pred CC
Q 007417 228 ED 229 (604)
Q Consensus 228 ~~ 229 (604)
..
T Consensus 262 ~~ 263 (285)
T KOG4210|consen 262 EP 263 (285)
T ss_pred CC
Confidence 44
No 160
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.46 E-value=0.00022 Score=60.17 Aligned_cols=58 Identities=28% Similarity=0.534 Sum_probs=39.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCC
Q 007417 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKN 214 (604)
Q Consensus 151 ~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~ 214 (604)
+.|+|.+++..++-++|+++|++||.|..|.+.+. ...|||.|.+++.|++|+..+..
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~ 59 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKE 59 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHh
Confidence 57899999999999999999999999999999654 34799999999999999998643
No 161
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.37 E-value=0.00023 Score=69.61 Aligned_cols=77 Identities=19% Similarity=0.439 Sum_probs=59.4
Q ss_pred CCEEEEcCCCCCCCHHHH------HHHhhccCCeEEEEEeecCCC-CCCcceE--EEEEeehHHHHHHHHhcCCCeeeCc
Q 007417 150 EHEIFIGGLDRDATQEDV------RKVFERIGEVIEVRLHKNFST-NRNKGYA--FVKFANKEHAKRALTEMKNPVICGK 220 (604)
Q Consensus 150 ~~~vfV~nLp~~~te~dL------~~~F~~~G~V~~v~i~~d~~t-g~~kG~a--fV~F~~~e~A~~Al~~l~~~~l~g~ 220 (604)
..-|||-+||+.+..+++ .++|.+||.|..|.|-+...+ ....+.+ ||.|.+.++|.+|+.+.++..+.||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 346788999998877662 389999999998877543211 1222334 9999999999999999999999999
Q ss_pred ccccCC
Q 007417 221 RCGTAP 226 (604)
Q Consensus 221 ~i~v~~ 226 (604)
.|+...
T Consensus 194 ~lkatY 199 (480)
T COG5175 194 VLKATY 199 (480)
T ss_pred eEeeec
Confidence 987654
No 162
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.34 E-value=0.00032 Score=54.99 Aligned_cols=67 Identities=12% Similarity=0.298 Sum_probs=45.9
Q ss_pred cccccCCCCcccChh----hHHhhhcccC-CEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEE
Q 007417 329 KTVFLDGVPPHWKEN----QIRDQIKGYG-DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 403 (604)
Q Consensus 329 ~~l~v~nLp~~~t~~----~l~~~F~~~G-~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~ 403 (604)
+.|+|.|||...+.. .|+.++.-+| .|..| +.+.|+|.|.+++.|.+|...|+|..+.|++|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 468999999988765 4556666775 55444 13579999999999999999999999999999998
Q ss_pred Ee
Q 007417 404 LR 405 (604)
Q Consensus 404 ~~ 405 (604)
+.
T Consensus 73 ~~ 74 (90)
T PF11608_consen 73 FS 74 (90)
T ss_dssp SS
T ss_pred Ec
Confidence 75
No 163
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.23 E-value=0.00072 Score=49.26 Aligned_cols=52 Identities=23% Similarity=0.537 Sum_probs=43.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHH
Q 007417 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRAL 209 (604)
Q Consensus 151 ~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al 209 (604)
+.|-|.+.+.+..+. |..+|.+||+|..+.+. ....+.||+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVP------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcC------CCCcEEEEEECCHHHHHhhC
Confidence 578899999887764 56699999999998884 34668999999999999986
No 164
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.17 E-value=0.00031 Score=68.97 Aligned_cols=75 Identities=19% Similarity=0.376 Sum_probs=67.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccC--CeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccc
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFERIG--EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCG 223 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~~G--~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~ 223 (604)
....+||+||-|.+|++||-+.+...| .+.++++..++..|.+||||+|...+..+.++.++.|-...|+|..-.
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~ 155 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPT 155 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCe
Confidence 346899999999999999999998887 578899999999999999999999999999999999988888887543
No 165
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=0.0047 Score=65.17 Aligned_cols=119 Identities=14% Similarity=0.195 Sum_probs=73.8
Q ss_pred ccCCCCEEEEcCCCCC-CCHHHHHHHhhcc----CCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCc
Q 007417 146 KIKKEHEIFIGGLDRD-ATQEDVRKVFERI----GEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGK 220 (604)
Q Consensus 146 ~~~~~~~vfV~nLp~~-~te~dL~~~F~~~----G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~ 220 (604)
.....++|-|-||.|+ +.-.||.-+|+.| |.|.+|.|+.... | ...|..-.++|.
T Consensus 170 ~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeF-G-------------------keRM~eEeV~GP 229 (650)
T KOG2318|consen 170 LGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEF-G-------------------KERMKEEEVHGP 229 (650)
T ss_pred cccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhh-h-------------------HHHhhhhcccCC
Confidence 3557899999999995 6789999999887 5899999975421 1 223333445555
Q ss_pred ccccCCCCC-CCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCC
Q 007417 221 RCGTAPSED-NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPD 299 (604)
Q Consensus 221 ~i~v~~~~~-~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~ 299 (604)
++.+..... ... .-......++..++.+.+|+. ... .--||.|+|.+.+.|.++...+.|..
T Consensus 230 ~~el~~~~e~~~~---s~sD~ee~~~~~~~kLR~Yq~---~rL-----------kYYyAVvecDsi~tA~~vYe~CDG~E 292 (650)
T KOG2318|consen 230 PKELFKPVEEYKE---SESDDEEEEDVDREKLRQYQL---NRL-----------KYYYAVVECDSIETAKAVYEECDGIE 292 (650)
T ss_pred hhhhccccccCcc---cccchhhhhhHHHHHHHHHHh---hhh-----------eeEEEEEEecCchHHHHHHHhcCcce
Confidence 333211110 000 001112223344666666652 111 22479999999999999999999987
Q ss_pred ee
Q 007417 300 VV 301 (604)
Q Consensus 300 ~~ 301 (604)
+-
T Consensus 293 fE 294 (650)
T KOG2318|consen 293 FE 294 (650)
T ss_pred ec
Confidence 63
No 166
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.02 E-value=0.015 Score=59.22 Aligned_cols=66 Identities=14% Similarity=0.246 Sum_probs=54.8
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeec---CCC--CCc--------ceEEEEEeCCHHHHHHHHHHhcC
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARN---MST--AKR--------KDYGFIDFSTHEAAVACINAINN 392 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d---~~~--g~~--------~G~afV~F~~~~~A~~A~~~lng 392 (604)
..++|.+-|||.+-.-+.|.++|..+|.|..|+|+.- +.. +.+ +-+|||+|++.+.|.+|.+.||.
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 4678999999999888999999999999999999765 222 222 44689999999999999987754
No 167
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.92 E-value=0.00038 Score=65.99 Aligned_cols=72 Identities=21% Similarity=0.424 Sum_probs=61.9
Q ss_pred ccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCC--------CCcceE----EEEEeCCHHHHHHHHHHhcCCee
Q 007417 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMST--------AKRKDY----GFIDFSTHEAAVACINAINNKEF 395 (604)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~--------g~~~G~----afV~F~~~~~A~~A~~~lng~~~ 395 (604)
+-.||+++||+.+....|+++|++||.|-.|.+.....+ +..+.. |.|+|.+...|..+...||+..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 458999999999999999999999999999999776544 222222 67999999999999999999999
Q ss_pred CCCc
Q 007417 396 SDGN 399 (604)
Q Consensus 396 ~g~~ 399 (604)
+|+.
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9975
No 168
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.81 E-value=0.004 Score=65.36 Aligned_cols=71 Identities=23% Similarity=0.374 Sum_probs=58.7
Q ss_pred CCCCEEEEcCCCCC--CCHH----HHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeC
Q 007417 148 KKEHEIFIGGLDRD--ATQE----DVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICG 219 (604)
Q Consensus 148 ~~~~~vfV~nLp~~--~te~----dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g 219 (604)
--...|+|-|+|-- +..+ -|.++|+++|+|+.+.++.+..+| ++||.|++|.+..+|+.|++.|||..|.-
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldk 132 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDK 132 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecc
Confidence 45679999999973 2223 355889999999999999887655 99999999999999999999999876643
No 169
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.80 E-value=0.0013 Score=69.26 Aligned_cols=65 Identities=20% Similarity=0.283 Sum_probs=54.4
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhc-cCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCee
Q 007417 147 IKKEHEIFIGGLDRDATQEDVRKVFER-IGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVI 217 (604)
Q Consensus 147 ~~~~~~vfV~nLp~~~te~dL~~~F~~-~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l 217 (604)
...++.|+|.||-.-.|.-.|+.++.. +|.|++..| | +-+..|||.|.+.++|.+.+.+||+..+
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--D----kIKShCyV~yss~eEA~atr~AlhnV~W 506 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--D----KIKSHCYVSYSSVEEAAATREALHNVQW 506 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHHHH--H----HhhcceeEecccHHHHHHHHHHHhcccc
Confidence 446789999999999999999999995 667777633 3 4567899999999999999999998543
No 170
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.71 E-value=0.0024 Score=60.75 Aligned_cols=94 Identities=16% Similarity=0.236 Sum_probs=78.2
Q ss_pred HHHHHHHHhCCCCeecCCCCcceeecccCCCCCCChhhhccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCC
Q 007417 287 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMST 366 (604)
Q Consensus 287 ~A~~Al~~l~~~~~~~g~~~r~l~v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~ 366 (604)
-|..|...|.+... .++.++|.|+.. ..|+|.||+..++-+.|...|+.||.|....+..| ..
T Consensus 6 ~ae~ak~eLd~~~~----~~~~lr~rfa~~------------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r 68 (275)
T KOG0115|consen 6 LAEIAKRELDGRFP----KGRSLRVRFAMH------------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DR 68 (275)
T ss_pred HHHHHHHhcCCCCC----CCCceEEEeecc------------ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-cc
Confidence 46666677877766 578899998864 57999999999999999999999999998877777 35
Q ss_pred CCcceEEEEEeCCHHHHHHHHHHhcCCeeCC
Q 007417 367 AKRKDYGFIDFSTHEAAVACINAINNKEFSD 397 (604)
Q Consensus 367 g~~~G~afV~F~~~~~A~~A~~~lng~~~~g 397 (604)
+++.+-++|+|...-.|.+|+..++-.-|.+
T Consensus 69 ~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~ 99 (275)
T KOG0115|consen 69 GKPTREGIVEFAKKPNARKAARRCREGGFGG 99 (275)
T ss_pred ccccccchhhhhcchhHHHHHHHhccCcccc
Confidence 7888999999999999999998876555544
No 171
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.71 E-value=0.0019 Score=67.75 Aligned_cols=69 Identities=16% Similarity=0.353 Sum_probs=57.6
Q ss_pred cccccCCCCccc------ChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCC
Q 007417 329 KTVFLDGVPPHW------KENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG 398 (604)
Q Consensus 329 ~~l~v~nLp~~~------t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~ 398 (604)
+.|+|.|+|--- -..-|..+|+++|.|+...++.+..+| .+||.|++|.+..+|+.|++.|||+.|.-.
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldkn 133 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKN 133 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceeccc
Confidence 578888887521 224567899999999999999887655 999999999999999999999999988643
No 172
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.69 E-value=0.0024 Score=60.73 Aligned_cols=104 Identities=19% Similarity=0.173 Sum_probs=85.6
Q ss_pred HHHHHHHhcCCCeeeCcccccCCCCCCCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEec
Q 007417 204 HAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFS 283 (604)
Q Consensus 204 ~A~~Al~~l~~~~l~g~~i~v~~~~~~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~ 283 (604)
-|..|...|++....++.++|..+.. ..|+|.||..-+..+.+.+.|+.||+ |....++-|. .++..+-++|.|.
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~-a~l~V~nl~~~~sndll~~~f~~fg~--~e~av~~vD~--r~k~t~eg~v~~~ 80 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH-AELYVVNLMQGASNDLLEQAFRRFGP--IERAVAKVDD--RGKPTREGIVEFA 80 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc-ceEEEEecchhhhhHHHHHhhhhcCc--cchheeeecc--cccccccchhhhh
Confidence 45666677899999999999999988 99999999999999999999999998 8877766653 6778889999999
Q ss_pred CHHHHHHHHHHhCCCCeecCCCCcceeec
Q 007417 284 CHVDAMAAYKRLQKPDVVFGHPERTVKVA 312 (604)
Q Consensus 284 ~~e~A~~Al~~l~~~~~~~g~~~r~l~v~ 312 (604)
..-.+.+|+..+...-+.....++++.|.
T Consensus 81 ~k~~a~~a~rr~~~~g~~~~~~~~p~~Ve 109 (275)
T KOG0115|consen 81 KKPNARKAARRCREGGFGGTTGGRPVGVE 109 (275)
T ss_pred cchhHHHHHHHhccCccccCCCCCccCCC
Confidence 99999999998865555444444554444
No 173
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.63 E-value=0.0033 Score=61.74 Aligned_cols=79 Identities=22% Similarity=0.450 Sum_probs=60.8
Q ss_pred cccccCCCCcccChhh----H--HhhhcccCCEEEEEEeecCCCCCc-ce--EEEEEeCCHHHHHHHHHHhcCCeeCCCc
Q 007417 329 KTVFLDGVPPHWKENQ----I--RDQIKGYGDVIRIVLARNMSTAKR-KD--YGFIDFSTHEAAVACINAINNKEFSDGN 399 (604)
Q Consensus 329 ~~l~v~nLp~~~t~~~----l--~~~F~~~G~v~~v~i~~d~~~g~~-~G--~afV~F~~~~~A~~A~~~lng~~~~g~~ 399 (604)
+-+||-+||+.+-.++ | .++|.+||.|..|.|-+...+-.+ .+ -.||+|.+.++|.+||...+|..+.||.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 5688999988775554 3 479999999999887654321111 12 2499999999999999999999999999
Q ss_pred cEEEEeee
Q 007417 400 SKVKLRAR 407 (604)
Q Consensus 400 ~~v~~~~~ 407 (604)
|++.+...
T Consensus 195 lkatYGTT 202 (480)
T COG5175 195 LKATYGTT 202 (480)
T ss_pred EeeecCch
Confidence 99987533
No 174
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.46 E-value=0.0031 Score=64.15 Aligned_cols=67 Identities=22% Similarity=0.327 Sum_probs=56.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeec---CCCC--C--------CcceEEEEEeehHHHHHHHHhcCC
Q 007417 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKN---FSTN--R--------NKGYAFVKFANKEHAKRALTEMKN 214 (604)
Q Consensus 148 ~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d---~~tg--~--------~kG~afV~F~~~e~A~~Al~~l~~ 214 (604)
..++||.+-|||.+-.-+.|.++|..||.|..|+|+.- +.+. . .+-+|+|+|...+.|.+|.+.|+.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 37899999999999988999999999999999999875 3222 1 255799999999999999997653
No 175
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.34 E-value=0.0042 Score=45.25 Aligned_cols=52 Identities=13% Similarity=0.515 Sum_probs=40.8
Q ss_pred cccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH
Q 007417 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387 (604)
Q Consensus 329 ~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~ 387 (604)
+.|.|.+.+....+. +..+|..||.|..+.+... .-+.+|+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 457788888776544 5558889999999888622 448999999999999985
No 176
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.31 E-value=0.0075 Score=58.29 Aligned_cols=63 Identities=17% Similarity=0.325 Sum_probs=50.9
Q ss_pred hhhHHhhhcccCCEEEEEEeecCCCCCc-ceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEE
Q 007417 342 ENQIRDQIKGYGDVIRIVLARNMSTAKR-KDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (604)
Q Consensus 342 ~~~l~~~F~~~G~v~~v~i~~d~~~g~~-~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~ 404 (604)
++++++.+.+||.|..|.|...+..-.. ---.||+|+..++|.+|+-.|||+.|+||.+...+
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 4678899999999999998776432111 12369999999999999999999999999877655
No 177
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.02 E-value=0.0027 Score=60.60 Aligned_cols=62 Identities=31% Similarity=0.451 Sum_probs=50.6
Q ss_pred HHHHHHhh-ccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCC
Q 007417 165 EDVRKVFE-RIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (604)
Q Consensus 165 ~dL~~~F~-~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (604)
++|...|+ +||+|+++.|+.+. .-...|-+||.|...++|++|+..||+..+.|++|.....
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 34444555 89999999887664 3467899999999999999999999999999999865443
No 178
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.01 E-value=0.0028 Score=60.45 Aligned_cols=62 Identities=16% Similarity=0.370 Sum_probs=50.5
Q ss_pred hhHHhhhc-ccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEe
Q 007417 343 NQIRDQIK-GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (604)
Q Consensus 343 ~~l~~~F~-~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~ 405 (604)
++|...|+ +||+|+.++|..+. .-.-+|-++|.|...++|.+|++.||+..|.|++|.+.+.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 45555555 89999998775542 2345788999999999999999999999999999999874
No 179
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.68 E-value=0.028 Score=46.70 Aligned_cols=72 Identities=18% Similarity=0.267 Sum_probs=48.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecC-------CCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcc
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNF-------STNRNKGYAFVKFANKEHAKRALTEMKNPVICGKR 221 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~-------~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~ 221 (604)
.++.|.|=+.|...+. .|-++|++||.|.+..-+... ..-.....-.|+|.++.+|.+||.. |+..|.|..
T Consensus 5 ~~~wVtVFGfp~~~~~-~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPSASN-QVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GGGHH-HHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCE
T ss_pred CCeEEEEEccCHHHHH-HHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcE
Confidence 4567888899998544 688999999999777511000 0013466899999999999999985 888887764
Q ss_pred c
Q 007417 222 C 222 (604)
Q Consensus 222 i 222 (604)
+
T Consensus 83 m 83 (100)
T PF05172_consen 83 M 83 (100)
T ss_dssp E
T ss_pred E
Confidence 3
No 180
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=95.59 E-value=0.08 Score=59.61 Aligned_cols=58 Identities=14% Similarity=0.141 Sum_probs=40.6
Q ss_pred ccChhhHHhhhcccCC-----EEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEe
Q 007417 339 HWKENQIRDQIKGYGD-----VIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (604)
Q Consensus 339 ~~t~~~l~~~F~~~G~-----v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~ 405 (604)
.++..+|-.+...-+. |-.|.|..+ |.||+-. ...|...+..|++..+.|+.+.|+..
T Consensus 498 ~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~--------~s~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (629)
T PRK11634 498 GVEVRHIVGAIANEGDISSRYIGNIKLFAS--------HSTIELP-KGMPGEVLQHFTRTRILNKPMNMQLL 560 (629)
T ss_pred CCCHHHHHHHHHhhcCCChhhCCcEEEeCC--------ceEEEcC-hhhHHHHHHHhccccccCCceEEEEC
Confidence 4566666666655443 345666543 7889864 45578888999999999999888764
No 181
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.21 E-value=0.051 Score=45.18 Aligned_cols=71 Identities=18% Similarity=0.260 Sum_probs=47.0
Q ss_pred cccccCCCCcccChhhHHhhhcccCCEEEEEEe-ecC------CCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccE
Q 007417 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLA-RNM------STAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSK 401 (604)
Q Consensus 329 ~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~-~d~------~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~ 401 (604)
+.|.|=+.|... ...|-++|++||.|.+..-+ ++. ..-....+..|+|.++.+|.+||. -||..|.|..+.
T Consensus 7 ~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~mv 84 (100)
T PF05172_consen 7 TWVTVFGFPPSA-SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLMV 84 (100)
T ss_dssp CEEEEE---GGG-HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEEE
T ss_pred eEEEEEccCHHH-HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEEE
Confidence 457788888874 45677899999999776411 100 001124578999999999999997 699999887543
No 182
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=94.77 E-value=0.054 Score=47.82 Aligned_cols=56 Identities=14% Similarity=0.427 Sum_probs=45.2
Q ss_pred hhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEeee
Q 007417 343 NQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407 (604)
Q Consensus 343 ~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~~ 407 (604)
.+|-+.|..||.|.=++++.+ .-+|+|.+-+.|.+|+. |+|..+.|+.++|+++..
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE---
T ss_pred HHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCc
Confidence 467788999999888877654 36899999999999986 999999999999988644
No 183
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=94.67 E-value=0.055 Score=47.80 Aligned_cols=70 Identities=17% Similarity=0.293 Sum_probs=51.7
Q ss_pred CCCEEEEcCCCC-----CCCHH----HHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeC
Q 007417 149 KEHEIFIGGLDR-----DATQE----DVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICG 219 (604)
Q Consensus 149 ~~~~vfV~nLp~-----~~te~----dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g 219 (604)
...||.|.=+.. ..-.+ +|-+.|.+||+|.-||++-+ .-+|+|.+-++|.+|+. +++..+.|
T Consensus 26 pDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~g 96 (146)
T PF08952_consen 26 PDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVNG 96 (146)
T ss_dssp TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEETT
T ss_pred CCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEECC
Confidence 456777776651 12222 57788899999999998754 58999999999999998 79999999
Q ss_pred cccccCCC
Q 007417 220 KRCGTAPS 227 (604)
Q Consensus 220 ~~i~v~~~ 227 (604)
+.|.|...
T Consensus 97 ~~l~i~LK 104 (146)
T PF08952_consen 97 RTLKIRLK 104 (146)
T ss_dssp EEEEEEE-
T ss_pred EEEEEEeC
Confidence 98876543
No 184
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.59 E-value=0.082 Score=51.34 Aligned_cols=75 Identities=16% Similarity=0.282 Sum_probs=56.1
Q ss_pred CCEEEEcCCCC--CCC---HHHHHHHhhccCCeEEEEEeecCCCCC-CcceEEEEEeehHHHHHHHHhcCCCeeeCcccc
Q 007417 150 EHEIFIGGLDR--DAT---QEDVRKVFERIGEVIEVRLHKNFSTNR-NKGYAFVKFANKEHAKRALTEMKNPVICGKRCG 223 (604)
Q Consensus 150 ~~~vfV~nLp~--~~t---e~dL~~~F~~~G~V~~v~i~~d~~tg~-~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~ 223 (604)
.+.|.++|+=- .+. ++++++-+.+||.|..|.|...+.--. -.---||+|...++|.+|+-.||+..+.|+.+.
T Consensus 281 tkvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~ 360 (378)
T KOG1996|consen 281 TKVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVS 360 (378)
T ss_pred hHHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeee
Confidence 34466666522 333 456788999999999999977643221 223489999999999999999999999999775
Q ss_pred c
Q 007417 224 T 224 (604)
Q Consensus 224 v 224 (604)
.
T Consensus 361 A 361 (378)
T KOG1996|consen 361 A 361 (378)
T ss_pred h
Confidence 3
No 185
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.31 E-value=0.17 Score=40.03 Aligned_cols=56 Identities=21% Similarity=0.465 Sum_probs=42.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcC
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMK 213 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~ 213 (604)
.....+|. .|......||.++|+.||.| .|..+-+ ..|||...+.+.|..++..+.
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~d-------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWIND-------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCE-EEEEECT-------TEEEEEECCCHHHHHHHHHHT
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcC-------CcEEEEeecHHHHHHHHHHhc
Confidence 34566666 99999999999999999998 4555544 259999999999999998765
No 186
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=94.11 E-value=0.23 Score=37.22 Aligned_cols=54 Identities=24% Similarity=0.445 Sum_probs=43.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcc----CCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhc
Q 007417 150 EHEIFIGGLDRDATQEDVRKVFERI----GEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212 (604)
Q Consensus 150 ~~~vfV~nLp~~~te~dL~~~F~~~----G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l 212 (604)
...|+|+++.. ++-++|+.+|..| + ...|..+-|. .|=|.|.+.+.|.+||.+|
T Consensus 5 peavhirGvd~-lsT~dI~~y~~~y~~~~~-~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVDE-LSTDDIKAYFSEYFDEEG-PFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCCC-CCHHHHHHHHHHhcccCC-CceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 45899999965 6667899999998 4 4467777663 3999999999999999864
No 187
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=93.82 E-value=0.052 Score=54.78 Aligned_cols=76 Identities=13% Similarity=0.229 Sum_probs=62.6
Q ss_pred cccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCC---CCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEe
Q 007417 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMST---AKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (604)
Q Consensus 329 ~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~---g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~ 405 (604)
..|.|.||.+.+|.++++.+|.-.|.|..+.|+..... ....-.|||.|.+...+..|. .|.++.|-++-|.|...
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEec
Confidence 47899999999999999999999999999998764321 234558999999999999885 58889998888777643
No 188
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.71 E-value=0.081 Score=49.18 Aligned_cols=73 Identities=12% Similarity=0.157 Sum_probs=47.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhc-cCCe---EEEEEeecCCC--CCCcceEEEEEeehHHHHHHHHhcCCCeeeCcc
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFER-IGEV---IEVRLHKNFST--NRNKGYAFVKFANKEHAKRALTEMKNPVICGKR 221 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~-~G~V---~~v~i~~d~~t--g~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~ 221 (604)
....|.||+||+.+|++++.+.++. ++.. ..+.-.....+ ...-.-|||.|.+.+++......+++..+....
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 5679999999999999998886666 5554 34432222111 123456999999999999999999997766544
No 189
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=93.70 E-value=0.13 Score=38.41 Aligned_cols=55 Identities=20% Similarity=0.298 Sum_probs=43.9
Q ss_pred ccccccCCCCcccChhhHHhhhccc---CCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 007417 328 VKTVFLDGVPPHWKENQIRDQIKGY---GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390 (604)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~F~~~---G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~l 390 (604)
...|+|+++. .++.++|+.+|..| .....|..+-|. -|=|.|.+...|.+||.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 3579999984 58889999999998 234567777663 3789999999999999764
No 190
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=93.25 E-value=0.052 Score=57.70 Aligned_cols=76 Identities=14% Similarity=0.201 Sum_probs=58.5
Q ss_pred hhccccccccCCCCcccChhhHHhhhcc-cCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeC---CCc
Q 007417 324 IMAHVKTVFLDGVPPHWKENQIRDQIKG-YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS---DGN 399 (604)
Q Consensus 324 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~-~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~---g~~ 399 (604)
....++.|+|.||-..+|.-.|+.++.. +|.|+.. +.|+ -+..|||.|.+.++|.+.+.+|||..+- .+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmDk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMDK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH--HHHH----hhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 3445789999999999999999999995 5666555 3332 3557999999999999999999998763 344
Q ss_pred cEEEEe
Q 007417 400 SKVKLR 405 (604)
Q Consensus 400 ~~v~~~ 405 (604)
|.+.|.
T Consensus 514 L~adf~ 519 (718)
T KOG2416|consen 514 LIADFV 519 (718)
T ss_pred eEeeec
Confidence 555543
No 191
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=93.23 E-value=0.31 Score=55.20 Aligned_cols=29 Identities=24% Similarity=0.455 Sum_probs=24.0
Q ss_pred CCcceEEEEEeehHHHHHHHHhcCCCeee
Q 007417 190 RNKGYAFVKFANKEHAKRALTEMKNPVIC 218 (604)
Q Consensus 190 ~~kG~afV~F~~~e~A~~Al~~l~~~~l~ 218 (604)
.-+||-||+-....++..||+-+.+..+.
T Consensus 208 ~lkGyIYIEA~KqshV~~Ai~gv~niy~~ 236 (1024)
T KOG1999|consen 208 HLKGYIYIEADKQSHVKEAIEGVRNIYAN 236 (1024)
T ss_pred ccceeEEEEechhHHHHHHHhhhhhheec
Confidence 67999999999999999999987654433
No 192
>PF11627 HnRNPA1: Nuclear factor hnRNPA1; InterPro: IPR021662 This family of proteins represents hnRNPA1, a nuclear factor that binds to Pol II transcripts. The family of hnRNP proteins are involved in numerous RNA-related activities [].
Probab=92.09 E-value=0.18 Score=32.64 Aligned_cols=13 Identities=23% Similarity=0.524 Sum_probs=10.5
Q ss_pred CCCCCCCCCCCCC
Q 007417 482 RYTEFHGRQFIGR 494 (604)
Q Consensus 482 ~~g~~~g~~~gg~ 494 (604)
.++||.++++++.
T Consensus 16 nfGPmKggnfgG~ 28 (37)
T PF11627_consen 16 NFGPMKGGNFGGG 28 (37)
T ss_pred cccccccCCcCCc
Confidence 6889998888873
No 193
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=91.94 E-value=0.12 Score=51.53 Aligned_cols=76 Identities=18% Similarity=0.341 Sum_probs=57.9
Q ss_pred CEEEEcCCCCCCCHHHHH---HHhhccCCeEEEEEeecCCC-CC--CcceEEEEEeehHHHHHHHHhcCCCeeeCccccc
Q 007417 151 HEIFIGGLDRDATQEDVR---KVFERIGEVIEVRLHKNFST-NR--NKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (604)
Q Consensus 151 ~~vfV~nLp~~~te~dL~---~~F~~~G~V~~v~i~~d~~t-g~--~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v 224 (604)
+-+||-+|+..+..+.+- +.|.+||.|..|.+..++.+ .. .--.+||+|...++|..||...++..+.|+.+..
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 567888888876555443 68999999999999876531 11 1123899999999999999999999999988654
Q ss_pred CC
Q 007417 225 AP 226 (604)
Q Consensus 225 ~~ 226 (604)
..
T Consensus 158 ~~ 159 (327)
T KOG2068|consen 158 SL 159 (327)
T ss_pred hh
Confidence 43
No 194
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=91.84 E-value=0.29 Score=45.49 Aligned_cols=72 Identities=17% Similarity=0.255 Sum_probs=47.2
Q ss_pred ccccccCCCCcccChhhHHhhhcc-cCCE---EEEEEeecCC--CCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCc
Q 007417 328 VKTVFLDGVPPHWKENQIRDQIKG-YGDV---IRIVLARNMS--TAKRKDYGFIDFSTHEAAVACINAINNKEFSDGN 399 (604)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~F~~-~G~v---~~v~i~~d~~--~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~ 399 (604)
..+|.|++||+.+|++++.+.++. ++.. ..+.-..... ....-..|||.|.+.+++..-...++|..|.+..
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 358999999999999999998887 6655 2222111111 1122446999999999999999999998876654
No 195
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=91.62 E-value=0.31 Score=51.59 Aligned_cols=70 Identities=17% Similarity=0.253 Sum_probs=57.5
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhc--cCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCC--CeeeCccc
Q 007417 147 IKKEHEIFIGGLDRDATQEDVRKVFER--IGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKN--PVICGKRC 222 (604)
Q Consensus 147 ~~~~~~vfV~nLp~~~te~dL~~~F~~--~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~--~~l~g~~i 222 (604)
....|.|.|+-||..+-.++|+.+|+. |-++.+|.+-.+. -=||+|.+..+|+.|.+.|.. ..|.|+.|
T Consensus 172 ~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 172 NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 346789999999999999999999987 6788899886542 269999999999999998753 35677766
Q ss_pred c
Q 007417 223 G 223 (604)
Q Consensus 223 ~ 223 (604)
.
T Consensus 245 m 245 (684)
T KOG2591|consen 245 M 245 (684)
T ss_pred h
Confidence 4
No 196
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=90.54 E-value=0.75 Score=40.20 Aligned_cols=63 Identities=19% Similarity=0.244 Sum_probs=47.8
Q ss_pred hccCCCCEEEEcCCCCCC----CHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCC
Q 007417 145 RKIKKEHEIFIGGLDRDA----TQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKN 214 (604)
Q Consensus 145 ~~~~~~~~vfV~nLp~~~----te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~ 214 (604)
.+...-.||.|+=|..++ +...|-..++.||+|.+|.++ | +-.|.|.|.+..+|-+|+.+++.
T Consensus 81 ~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----G--rqsavVvF~d~~SAC~Av~Af~s 147 (166)
T PF15023_consen 81 TKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----G--RQSAVVVFKDITSACKAVSAFQS 147 (166)
T ss_pred CCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----C--CceEEEEehhhHHHHHHHHhhcC
Confidence 344567799998776654 333455667889999999885 2 44699999999999999998764
No 197
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=90.43 E-value=0.18 Score=52.25 Aligned_cols=11 Identities=0% Similarity=0.021 Sum_probs=5.4
Q ss_pred cchhhhccchh
Q 007417 29 PALVEVAKHND 39 (604)
Q Consensus 29 ~~avd~a~~k~ 39 (604)
+|.|+-.+.|.
T Consensus 25 KlTi~DtlkKE 35 (458)
T PF10446_consen 25 KLTINDTLKKE 35 (458)
T ss_pred cccHHHHHHHH
Confidence 55555544443
No 198
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=89.88 E-value=0.19 Score=52.30 Aligned_cols=76 Identities=14% Similarity=0.151 Sum_probs=60.8
Q ss_pred CCCEEEEcCCCCCC-CHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCC
Q 007417 149 KEHEIFIGGLDRDA-TQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (604)
Q Consensus 149 ~~~~vfV~nLp~~~-te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (604)
+.+.|-+.-.|+.. |-.+|..+|.+||+|..|-+-. +.-.|.|+|.+..+|-.|.. .++..|.++.|++.+-
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~------~~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDY------SSLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWH 443 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccC------chhhheeeeeccccccchhc-cccceecCceeEEEEe
Confidence 56777778888865 6689999999999999988832 24469999999999977776 5788999999987766
Q ss_pred CCCC
Q 007417 228 EDND 231 (604)
Q Consensus 228 ~~~~ 231 (604)
.+..
T Consensus 444 nps~ 447 (526)
T KOG2135|consen 444 NPSP 447 (526)
T ss_pred cCCc
Confidence 5543
No 199
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=89.56 E-value=0.91 Score=36.00 Aligned_cols=54 Identities=17% Similarity=0.463 Sum_probs=40.4
Q ss_pred cccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhc
Q 007417 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 391 (604)
Q Consensus 329 ~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~ln 391 (604)
...+|. +|..+-..||.++|+.||.|. |..+.|. -|||...+.+.|..|+..++
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhc
Confidence 455666 999999999999999999875 4445442 59999999999999988775
No 200
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=89.36 E-value=0.95 Score=34.46 Aligned_cols=53 Identities=13% Similarity=0.251 Sum_probs=41.4
Q ss_pred ccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCcc
Q 007417 339 HWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNS 400 (604)
Q Consensus 339 ~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~ 400 (604)
.++-++|+..+..|. +.+|..++ .|| ||.|.+..+|++|....+++.+..-.+
T Consensus 11 ~~~v~d~K~~Lr~y~---~~~I~~d~-----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m 63 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR---WDRIRDDR-----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRM 63 (66)
T ss_pred CccHHHHHHHHhcCC---cceEEecC-----CEE-EEEECChHHHHHHHHhcCCCEEEEEEE
Confidence 567789999999995 34444442 344 899999999999999999998876543
No 201
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=89.29 E-value=0.83 Score=39.93 Aligned_cols=69 Identities=9% Similarity=0.197 Sum_probs=50.7
Q ss_pred cccccCCCCccc----ChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEE
Q 007417 329 KTVFLDGVPPHW----KENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (604)
Q Consensus 329 ~~l~v~nLp~~~----t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~ 404 (604)
.+|.|+=|...+ +-..+...++.||.|..|.+. | +--|.|.|.+..+|..|+.++.. ...|..+.|.|
T Consensus 87 sTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----G--rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsW 158 (166)
T PF15023_consen 87 STIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----G--RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSW 158 (166)
T ss_pred eeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----C--CceEEEEehhhHHHHHHHHhhcC-CCCCceEEeec
Confidence 355555444433 334455667889999999874 2 33699999999999999999885 77788888887
Q ss_pred e
Q 007417 405 R 405 (604)
Q Consensus 405 ~ 405 (604)
.
T Consensus 159 q 159 (166)
T PF15023_consen 159 Q 159 (166)
T ss_pred c
Confidence 5
No 202
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=89.17 E-value=2.1 Score=36.33 Aligned_cols=67 Identities=18% Similarity=0.161 Sum_probs=49.9
Q ss_pred cccccCCCCcccChhhHHhhhccc-CCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCC
Q 007417 329 KTVFLDGVPPHWKENQIRDQIKGY-GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397 (604)
Q Consensus 329 ~~l~v~nLp~~~t~~~l~~~F~~~-G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g 397 (604)
..+.+-..|..++.++|..+.+.+ ..|..++|+++.. ..+=-++++|.+.++|..-...+||+.|.-
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 344455555566667777666665 4677889988732 345568899999999999999999998865
No 203
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=88.96 E-value=2.4 Score=35.99 Aligned_cols=68 Identities=10% Similarity=0.095 Sum_probs=51.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccC-CeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeee
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFERIG-EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVIC 218 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~~G-~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~ 218 (604)
....+-+...|+-++-++|..+.+.+- .|..++|+++. ..++-.+.++|.+.++|......+||..+.
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 344555555666677777877777664 57889998873 246778999999999999999999987653
No 204
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=87.78 E-value=0.45 Score=49.39 Aligned_cols=10 Identities=20% Similarity=0.398 Sum_probs=5.0
Q ss_pred CCEEEEcCCC
Q 007417 150 EHEIFIGGLD 159 (604)
Q Consensus 150 ~~~vfV~nLp 159 (604)
...+|.-...
T Consensus 121 d~~~WtP~~~ 130 (458)
T PF10446_consen 121 DYEFWTPGAT 130 (458)
T ss_pred cceeeccccc
Confidence 4455555443
No 205
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=87.71 E-value=2.4 Score=40.72 Aligned_cols=27 Identities=19% Similarity=0.330 Sum_probs=14.0
Q ss_pred ccccccchhhhhhHHhhhh-hcccccee
Q 007417 572 KRSFHVMASYLSNFLLSLI-YVSNTFVP 598 (604)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 598 (604)
|--|-+..||-+-....++ -|+|.++.
T Consensus 128 kvEyRVWnPfrSKLAA~I~gGvdnihik 155 (317)
T KOG1596|consen 128 KVEYRVWNPFRSKLAAGILGGVDNIHIK 155 (317)
T ss_pred cEEEEEeChHHHHHHHHhhcCccceeec
Confidence 5566666666555443332 24555543
No 206
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=87.21 E-value=0.6 Score=54.39 Aligned_cols=22 Identities=9% Similarity=0.175 Sum_probs=15.1
Q ss_pred EEcCCCCC----CCHHHHHHHhhccC
Q 007417 154 FIGGLDRD----ATQEDVRKVFERIG 175 (604)
Q Consensus 154 fV~nLp~~----~te~dL~~~F~~~G 175 (604)
--..||+. .|-++|.+++..+-
T Consensus 414 ~~~elPftf~~P~s~eel~~lL~~~~ 439 (840)
T PF04147_consen 414 AKSELPFTFPCPSSHEELLELLDGYS 439 (840)
T ss_pred cccCCCceecCCCCHHHHHHHHhcCC
Confidence 33456664 47788999998764
No 207
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=86.91 E-value=2.4 Score=45.22 Aligned_cols=87 Identities=21% Similarity=0.198 Sum_probs=68.2
Q ss_pred hHHHHHHHHhcCCCeeeCcccccCCCCCCCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEE
Q 007417 202 KEHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVM 281 (604)
Q Consensus 202 ~e~A~~Al~~l~~~~l~g~~i~v~~~~~~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~ 281 (604)
.+-...+|...-+..+..+-++|.+......|.|+-||.++-.++++.+|+.--...+++|....+. --||+
T Consensus 147 vdLI~Evlresp~VqvDekgekVrp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~--------nWyIT 218 (684)
T KOG2591|consen 147 VDLIVEVLRESPNVQVDEKGEKVRPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND--------NWYIT 218 (684)
T ss_pred hHHHHHHHhcCCCceeccCccccccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC--------ceEEE
Confidence 3444556666667778888888888888888889999999999999999986433348888876652 47999
Q ss_pred ecCHHHHHHHHHHhC
Q 007417 282 FSCHVDAMAAYKRLQ 296 (604)
Q Consensus 282 f~~~e~A~~Al~~l~ 296 (604)
|.+..||..|.+.|.
T Consensus 219 fesd~DAQqAykylr 233 (684)
T KOG2591|consen 219 FESDTDAQQAYKYLR 233 (684)
T ss_pred eecchhHHHHHHHHH
Confidence 999999999987544
No 208
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.28 E-value=3.5 Score=42.20 Aligned_cols=66 Identities=21% Similarity=0.240 Sum_probs=51.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCC-eEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCccc
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFERIGE-VIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRC 222 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~~G~-V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i 222 (604)
-.+.|-|-++|.....+||-..|..|+. =.+|+.+-+. .||-.|.+...|..||. |...+|.-|.|
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt-~kh~~lKiRpL 456 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALT-LKHDWLKIRPL 456 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhh-ccCceEEeeeh
Confidence 4578999999999999999999999974 3456666553 59999999999999998 45555544433
No 209
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=86.05 E-value=1.1 Score=51.98 Aligned_cols=7 Identities=14% Similarity=0.596 Sum_probs=3.0
Q ss_pred HHHHhhc
Q 007417 167 VRKVFER 173 (604)
Q Consensus 167 L~~~F~~ 173 (604)
|.++|..
T Consensus 741 La~~Fk~ 747 (784)
T PF04931_consen 741 LAAIFKE 747 (784)
T ss_pred HHHHHHH
Confidence 3344444
No 210
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=84.86 E-value=2.5 Score=41.73 Aligned_cols=64 Identities=22% Similarity=0.419 Sum_probs=49.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcc
Q 007417 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKR 221 (604)
Q Consensus 150 ~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~ 221 (604)
..=|-|=++|+..+. -|-.+|++||+|++... ..+-.+-+|.|.+.-+|++||.. ++.+|.|..
T Consensus 197 D~WVTVfGFppg~~s-~vL~~F~~cG~Vvkhv~------~~ngNwMhirYssr~~A~KALsk-ng~ii~g~v 260 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQVS-IVLNLFSRCGEVVKHVT------PSNGNWMHIRYSSRTHAQKALSK-NGTIIDGDV 260 (350)
T ss_pred cceEEEeccCccchh-HHHHHHHhhCeeeeeec------CCCCceEEEEecchhHHHHhhhh-cCeeeccce
Confidence 445666777776554 57789999999987655 34567999999999999999985 788777654
No 211
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=84.70 E-value=1.2 Score=41.60 Aligned_cols=58 Identities=10% Similarity=0.146 Sum_probs=44.8
Q ss_pred hhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhc--CCeeCCCccEEEEe
Q 007417 342 ENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN--NKEFSDGNSKVKLR 405 (604)
Q Consensus 342 ~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~ln--g~~~~g~~~~v~~~ 405 (604)
.+.|+++|..++.+..+.+++. =+-..|.|.+.++|.+|...|+ +..|.|..++|.+.
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~ 68 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFG 68 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE--
T ss_pred HHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEc
Confidence 4789999999998887777655 2357899999999999999999 99999999888876
No 212
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=84.68 E-value=0.6 Score=46.79 Aligned_cols=77 Identities=19% Similarity=0.351 Sum_probs=57.8
Q ss_pred cccccCCCCcccCh-hhHH--hhhcccCCEEEEEEeecCCC-CCc--ceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEE
Q 007417 329 KTVFLDGVPPHWKE-NQIR--DQIKGYGDVIRIVLARNMST-AKR--KDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 402 (604)
Q Consensus 329 ~~l~v~nLp~~~t~-~~l~--~~F~~~G~v~~v~i~~d~~~-g~~--~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v 402 (604)
+-++|-+|+..+.. ..|+ +.|.+||.|..|.+..+... ... ..-++|+|...++|..||...+|..+.|+.+++
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 46778888876544 4443 68999999999988876521 111 112799999999999999999999999988766
Q ss_pred EEe
Q 007417 403 KLR 405 (604)
Q Consensus 403 ~~~ 405 (604)
.+.
T Consensus 158 ~~g 160 (327)
T KOG2068|consen 158 SLG 160 (327)
T ss_pred hhC
Confidence 654
No 213
>COG4371 Predicted membrane protein [Function unknown]
Probab=83.71 E-value=2.4 Score=40.62 Aligned_cols=14 Identities=29% Similarity=0.344 Sum_probs=7.0
Q ss_pred hhhhhhHHhhhhhc
Q 007417 579 ASYLSNFLLSLIYV 592 (604)
Q Consensus 579 ~~~~~~~~~~~~~~ 592 (604)
..-||||-++-|.-
T Consensus 271 AatLGnl~lpaVn~ 284 (334)
T COG4371 271 AATLGNLPLPAVNT 284 (334)
T ss_pred HHHhcCCCCcccCc
Confidence 44555555554443
No 214
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=83.54 E-value=3 Score=47.66 Aligned_cols=24 Identities=8% Similarity=0.257 Sum_probs=18.7
Q ss_pred cccEEEEEecCHHHHHHHHHHhCC
Q 007417 274 SRGFAFVMFSCHVDAMAAYKRLQK 297 (604)
Q Consensus 274 skG~afV~f~~~e~A~~Al~~l~~ 297 (604)
-+||.||+-........|++.+.+
T Consensus 209 lkGyIYIEA~KqshV~~Ai~gv~n 232 (1024)
T KOG1999|consen 209 LKGYIYIEADKQSHVKEAIEGVRN 232 (1024)
T ss_pred cceeEEEEechhHHHHHHHhhhhh
Confidence 478999998888888888875543
No 215
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=82.62 E-value=2.8 Score=39.17 Aligned_cols=59 Identities=19% Similarity=0.184 Sum_probs=44.0
Q ss_pred CHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcC--CCeeeCcccccCCC
Q 007417 163 TQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMK--NPVICGKRCGTAPS 227 (604)
Q Consensus 163 te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~--~~~l~g~~i~v~~~ 227 (604)
..+.|+++|..++.+....+.+ +-+-..|.|.+.++|.+|...|+ +..+.|..|++-..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~------sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~ 68 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK------SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFG 68 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET------TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE--
T ss_pred hHHHHHHHHHhcCCceEEEEcC------CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEc
Confidence 4578999999999888777754 35569999999999999999999 88899988765443
No 216
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=82.28 E-value=0.77 Score=49.99 Aligned_cols=70 Identities=17% Similarity=0.236 Sum_probs=59.8
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccC
Q 007417 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (604)
Q Consensus 147 ~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (604)
.....+|||+||...+.++-++.++..||-|.+++... |+|..|.....+..|+..++...+.+..+.+.
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhcc
Confidence 34678999999999999999999999999998876642 89999999999999999887777777766543
No 217
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=81.99 E-value=1.9 Score=44.96 Aligned_cols=67 Identities=15% Similarity=0.236 Sum_probs=57.5
Q ss_pred ccccccCCCCcccChhhHHhhhccc-CCEEEEEEeecCCCCCcce-EEEEEeCCHHHHHHHHHHhcCCeeCC
Q 007417 328 VKTVFLDGVPPHWKENQIRDQIKGY-GDVIRIVLARNMSTAKRKD-YGFIDFSTHEAAVACINAINNKEFSD 397 (604)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~F~~~-G~v~~v~i~~d~~~g~~~G-~afV~F~~~~~A~~A~~~lng~~~~g 397 (604)
.+.|+|=.+|..++..||-.|+..+ -.|..++|++|. .+.- .++|.|.+.++|..-...+||+.|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~---~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG---MPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC---CCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 5789999999999999999999876 478899999963 3333 47899999999999999999998875
No 218
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=81.46 E-value=0.82 Score=47.70 Aligned_cols=72 Identities=11% Similarity=0.136 Sum_probs=58.0
Q ss_pred cccccCCCCccc-ChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEeee
Q 007417 329 KTVFLDGVPPHW-KENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407 (604)
Q Consensus 329 ~~l~v~nLp~~~-t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~~ 407 (604)
+.|-+.-.|..+ +-++|...|.+||.|..|.|-+. .--|.|+|.+..+|-.|.. .++-.|+++-|+|.|...
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 456666677765 55899999999999999988654 2258999999999977764 788999999999998544
No 219
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=81.27 E-value=3.7 Score=42.87 Aligned_cols=67 Identities=13% Similarity=0.194 Sum_probs=58.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccC-CeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeee
Q 007417 150 EHEIFIGGLDRDATQEDVRKVFERIG-EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVIC 218 (604)
Q Consensus 150 ~~~vfV~nLp~~~te~dL~~~F~~~G-~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~ 218 (604)
+..|+|-.+|..+|-.||-.|+..|- .|.+++|++|. --++-.+.|+|.+.++|......+||..+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 78999999999999999999998865 68999999963 245667899999999999999999987653
No 220
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=81.02 E-value=22 Score=39.62 Aligned_cols=8 Identities=50% Similarity=0.870 Sum_probs=5.1
Q ss_pred Cccccccc
Q 007417 569 HGVKRSFH 576 (604)
Q Consensus 569 ~~~~~~~~ 576 (604)
|+-.++|+
T Consensus 189 h~pr~~f~ 196 (828)
T PF04094_consen 189 HSPRRSFT 196 (828)
T ss_pred CccccCcC
Confidence 66666664
No 221
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=80.80 E-value=0.79 Score=49.90 Aligned_cols=70 Identities=14% Similarity=0.195 Sum_probs=61.4
Q ss_pred ccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEE
Q 007417 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (604)
Q Consensus 326 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~ 404 (604)
....++||+|+...+..+-++.....+|.|..++... |||..|..+..+..|+..++-..+++..+.+.+
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 3457899999999999999999999999988776543 899999999999999999998899888877765
No 222
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=77.49 E-value=7.7 Score=30.26 Aligned_cols=58 Identities=22% Similarity=0.332 Sum_probs=33.8
Q ss_pred ccChhhHHhhhcccC-----CEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEe
Q 007417 339 HWKENQIRDQIKGYG-----DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (604)
Q Consensus 339 ~~t~~~l~~~F~~~G-----~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~ 405 (604)
.++..+|..++...+ .|-.|.|..+ |+||+-.. +.|..++..|++..+.|+.+.|+.+
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 456777777776653 4567777644 78888654 4788889999999999999988753
No 223
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=77.47 E-value=13 Score=41.75 Aligned_cols=13 Identities=23% Similarity=0.294 Sum_probs=8.4
Q ss_pred eehHHHHHHHHhc
Q 007417 200 ANKEHAKRALTEM 212 (604)
Q Consensus 200 ~~~e~A~~Al~~l 212 (604)
.....+.+||+++
T Consensus 207 k~~~eiIrClka~ 219 (1102)
T KOG1924|consen 207 KNLQEIIRCLKAF 219 (1102)
T ss_pred HHHHHHHHHHHHH
Confidence 4556677777764
No 224
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=77.36 E-value=5.5 Score=46.76 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=9.4
Q ss_pred CCCCCCCHHHHHHHhhc
Q 007417 157 GLDRDATQEDVRKVFER 173 (604)
Q Consensus 157 nLp~~~te~dL~~~F~~ 173 (604)
.||-+...-+|..+-++
T Consensus 1448 ~lp~~~~k~~mssiVe~ 1464 (1640)
T KOG0262|consen 1448 KLPLDKEKLDMSSIVES 1464 (1640)
T ss_pred EecCCCcchHHHHHHHH
Confidence 46666555555555444
No 225
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=73.40 E-value=2.6 Score=34.09 Aligned_cols=72 Identities=22% Similarity=0.215 Sum_probs=42.0
Q ss_pred EEEEecCHHHHHHHHHHhCCCCeecCCCCcceeecccCCCCCCC--hhhhccccccccCCCCcccChhhHHhhhc
Q 007417 278 AFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPD--PEIMAHVKTVFLDGVPPHWKENQIRDQIK 350 (604)
Q Consensus 278 afV~f~~~e~A~~Al~~l~~~~~~~g~~~r~l~v~~a~~~~~~~--~~~~~~~~~l~v~nLp~~~t~~~l~~~F~ 350 (604)
|+|+|....-|...++. ....+.++.....+++....-..... -....+.++|.|.|||..++++.|++..+
T Consensus 1 AlITF~e~~VA~~i~~~-~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKK-KKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhC-CEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 68999999999888763 33333333222223332221111111 11223457899999999999999987553
No 226
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=71.99 E-value=11 Score=28.63 Aligned_cols=54 Identities=20% Similarity=0.325 Sum_probs=41.2
Q ss_pred CCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccc
Q 007417 161 DATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCG 223 (604)
Q Consensus 161 ~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~ 223 (604)
.++-++|+..+..|+-. +|..++ | | =||.|.+..+|++|....++..+....+.
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~-t----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~ 64 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDR-T----G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQ 64 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecC-C----E-EEEEECChHHHHHHHHhcCCCEEEEEEEE
Confidence 46788999999999632 333332 2 2 58999999999999999999888766543
No 227
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.44 E-value=9.4 Score=41.20 Aligned_cols=81 Identities=15% Similarity=0.223 Sum_probs=62.2
Q ss_pred hccccccccCCCCcc-cChhhHHhhhccc----CCEEEEEEeecCC----------CCC---------------------
Q 007417 325 MAHVKTVFLDGVPPH-WKENQIRDQIKGY----GDVIRIVLARNMS----------TAK--------------------- 368 (604)
Q Consensus 325 ~~~~~~l~v~nLp~~-~t~~~l~~~F~~~----G~v~~v~i~~d~~----------~g~--------------------- 368 (604)
...+++|-|-|+.|. +...+|.-+|..| |.|..|.|....- .|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 345689999999995 7889998888765 6888887754321 111
Q ss_pred ----------------cceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEe
Q 007417 369 ----------------RKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (604)
Q Consensus 369 ----------------~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~ 405 (604)
.-=||.|+|.+...|......++|.+|......+.++
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLR 303 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLR 303 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeee
Confidence 1126899999999999999999999998877777764
No 228
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=70.69 E-value=8.9 Score=39.40 Aligned_cols=39 Identities=18% Similarity=0.365 Sum_probs=31.8
Q ss_pred cCCCCEEEEcCCCCC-CCHHHHHHHhhcc----CCeEEEEEeec
Q 007417 147 IKKEHEIFIGGLDRD-ATQEDVRKVFERI----GEVIEVRLHKN 185 (604)
Q Consensus 147 ~~~~~~vfV~nLp~~-~te~dL~~~F~~~----G~V~~v~i~~d 185 (604)
-....+|-|=||.|+ +.-.+|...|+.| |+|..|.|+..
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyps 186 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPS 186 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechh
Confidence 456789999999995 6778999999887 57888888654
No 229
>PF12782 Innate_immun: Invertebrate innate immunity transcript family
Probab=69.69 E-value=86 Score=29.32 Aligned_cols=7 Identities=43% Similarity=0.434 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 007417 383 AVACINA 389 (604)
Q Consensus 383 A~~A~~~ 389 (604)
|..||.+
T Consensus 13 aalaisa 19 (311)
T PF12782_consen 13 AALAISA 19 (311)
T ss_pred HHHHHHH
Confidence 3344443
No 230
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=69.63 E-value=6.6 Score=38.84 Aligned_cols=63 Identities=17% Similarity=0.252 Sum_probs=47.4
Q ss_pred cccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCc
Q 007417 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGN 399 (604)
Q Consensus 329 ~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~ 399 (604)
.-|.|-++|+.. ...|-.+|++||.|.+..... .--+-.|.|.+..+|.+||. -||+.|+|..
T Consensus 198 ~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~~------ngNwMhirYssr~~A~KALs-kng~ii~g~v 260 (350)
T KOG4285|consen 198 TWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTPS------NGNWMHIRYSSRTHAQKALS-KNGTIIDGDV 260 (350)
T ss_pred ceEEEeccCccc-hhHHHHHHHhhCeeeeeecCC------CCceEEEEecchhHHHHhhh-hcCeeeccce
Confidence 456666777654 345678999999998765542 23488999999999999997 5888888753
No 231
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=69.10 E-value=3.8 Score=33.16 Aligned_cols=57 Identities=23% Similarity=0.344 Sum_probs=40.9
Q ss_pred EEEEEeehHHHHHHHHhcCCC-eeeCcccc---------------cCCCCCCCcceecccCCCCcHHHHHHHH
Q 007417 195 AFVKFANKEHAKRALTEMKNP-VICGKRCG---------------TAPSEDNDTLFVGNICNTWTKEAIKQKL 251 (604)
Q Consensus 195 afV~F~~~e~A~~Al~~l~~~-~l~g~~i~---------------v~~~~~~~~l~v~nlp~~~te~~l~~~f 251 (604)
|+|+|.+...|++.++.-... .+.+..+. +......++|.|.|||..+.++.|++..
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 689999999999999852221 23333332 2334457899999999999999987654
No 232
>COG4371 Predicted membrane protein [Function unknown]
Probab=68.11 E-value=10 Score=36.52 Aligned_cols=9 Identities=22% Similarity=-0.112 Sum_probs=4.2
Q ss_pred CCCCccccC
Q 007417 558 VDDPYFYDD 566 (604)
Q Consensus 558 ~~~~~~~~~ 566 (604)
.++||.|.-
T Consensus 258 ~~g~geyi~ 266 (334)
T COG4371 258 VAGMGEYIT 266 (334)
T ss_pred cCCCccchh
Confidence 345555543
No 233
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=67.60 E-value=1.4e+02 Score=29.89 Aligned_cols=62 Identities=11% Similarity=0.245 Sum_probs=50.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCC-------CCCCcceEEEEEeehHHHHHHHH
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFS-------TNRNKGYAFVKFANKEHAKRALT 210 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~-------tg~~kG~afV~F~~~e~A~~Al~ 210 (604)
..|.|.+.||..+++-..+...|-+||+|++|.++.+.. ..+..-...+.|-+.+.+.....
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYN 82 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYN 82 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHH
Confidence 367899999999999999999999999999999987741 12345678899999888766544
No 234
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=66.15 E-value=2.7 Score=47.10 Aligned_cols=67 Identities=16% Similarity=0.199 Sum_probs=52.2
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCee--eCccccc
Q 007417 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVI--CGKRCGT 224 (604)
Q Consensus 152 ~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l--~g~~i~v 224 (604)
+..+-|.+-..|-.-|..+|++||.|.+++..++ ...|.|+|.+.+.|..|+.++++..+ .|-+.+|
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~------~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V 368 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD------LNMALVSFSSVESAILALDALQGKEVSVTGAPSRV 368 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccc------ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeE
Confidence 3344455566778889999999999999998776 44699999999999999999988654 2444444
No 235
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=66.09 E-value=1.9 Score=47.09 Aligned_cols=16 Identities=25% Similarity=0.281 Sum_probs=7.7
Q ss_pred EecCHHHHHHHHHHhC
Q 007417 281 MFSCHVDAMAAYKRLQ 296 (604)
Q Consensus 281 ~f~~~e~A~~Al~~l~ 296 (604)
.|...|...-++..|-
T Consensus 329 ~fs~vEcLL~afh~La 344 (556)
T PF05918_consen 329 QFSYVECLLYAFHQLA 344 (556)
T ss_dssp -HHHHHHHHHHHHHHH
T ss_pred cchHhhHHHHHHHHHh
Confidence 3455555555555443
No 236
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=65.08 E-value=1.2e+02 Score=34.18 Aligned_cols=12 Identities=8% Similarity=0.338 Sum_probs=5.3
Q ss_pred cccChhhHHhhh
Q 007417 338 PHWKENQIRDQI 349 (604)
Q Consensus 338 ~~~t~~~l~~~F 349 (604)
|+|.++|.+-+.
T Consensus 9 WDW~~ED~K~Vv 20 (828)
T PF04094_consen 9 WDWGPEDFKMVV 20 (828)
T ss_pred CCCCHHHHHHHH
Confidence 444444444333
No 237
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=64.37 E-value=15 Score=41.65 Aligned_cols=10 Identities=20% Similarity=0.162 Sum_probs=5.2
Q ss_pred CHHHHHHHHH
Q 007417 379 THEAAVACIN 388 (604)
Q Consensus 379 ~~~~A~~A~~ 388 (604)
++.....||.
T Consensus 500 ~~~~~~~~i~ 509 (629)
T PRK11634 500 EVRHIVGAIA 509 (629)
T ss_pred CHHHHHHHHH
Confidence 4555555554
No 238
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=64.17 E-value=4.9 Score=45.17 Aligned_cols=73 Identities=21% Similarity=0.370 Sum_probs=58.1
Q ss_pred ccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCee--CCCccEEEEeee
Q 007417 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF--SDGNSKVKLRAR 407 (604)
Q Consensus 330 ~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~--~g~~~~v~~~~~ 407 (604)
+..+.|.+-..+-.-|..+|++||.|..+..+++- -.|.|+|.+.+.|..|+.+|+|+++ .|...+|.++..
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 45566666777888999999999999999887763 3589999999999999999999975 456666665544
Q ss_pred c
Q 007417 408 L 408 (604)
Q Consensus 408 ~ 408 (604)
.
T Consensus 374 ~ 374 (1007)
T KOG4574|consen 374 L 374 (1007)
T ss_pred c
Confidence 3
No 239
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=62.91 E-value=17 Score=28.27 Aligned_cols=57 Identities=19% Similarity=0.344 Sum_probs=34.0
Q ss_pred CCCHHHHHHHhhccC-----CeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCC
Q 007417 161 DATQEDVRKVFERIG-----EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (604)
Q Consensus 161 ~~te~dL~~~F~~~G-----~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (604)
.++..+|..++...+ .|-.|.|..+ |+||+-.. +.|..++..|++..+.|+++.++.
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~ 73 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVER 73 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-T-T-HHHHHHHHTT--SSS----EEE
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEE
Confidence 467788888887764 3566777533 78888654 478889999999999999988754
No 240
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=62.00 E-value=25 Score=29.64 Aligned_cols=107 Identities=18% Similarity=0.261 Sum_probs=61.7
Q ss_pred CCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCe--eeCcccccCCCCCCCccee
Q 007417 158 LDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPV--ICGKRCGTAPSEDNDTLFV 235 (604)
Q Consensus 158 Lp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~--l~g~~i~v~~~~~~~~l~v 235 (604)
||+-+.. |-++|+.=|+|.+|..+..-.+ ..|+-.+++.. +.|. |++-.......+++
T Consensus 11 lPPYTnK--LSDYfeSPGKI~svItvtqypd-----------------ndal~~~~G~lE~vDg~-i~IGs~q~~~sV~i 70 (145)
T TIGR02542 11 LPPYTNK--LSDYFESPGKIQSVITVTQYPD-----------------NDALLYVHGTLEQVDGN-IRIGSGQTPASVRI 70 (145)
T ss_pred cCCccch--hhHHhcCCCceEEEEEEeccCC-----------------chhhheeeeehhhccCc-EEEccCCCcccEEE
Confidence 6766554 8899999999999887654221 12233334321 3333 44444444445555
Q ss_pred ccc---------CCCCcHHHHHHHHHhcCC-cceeEEEEeccccCCCCcccEEEEEecCH
Q 007417 236 GNI---------CNTWTKEAIKQKLKDYGV-EGVENINLVSDIQHEGLSRGFAFVMFSCH 285 (604)
Q Consensus 236 ~nl---------p~~~te~~l~~~f~~~G~-~~v~~i~i~~~~~~~g~skG~afV~f~~~ 285 (604)
.+- |+.+|-.++++.|+.--. .+|+.-.+.++--..| +-..||..|...
T Consensus 71 ~gTPsgnnv~F~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~G-sYRiCFrL~~~~ 129 (145)
T TIGR02542 71 QGTPSGNNVIFPPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEG-SYRICFRLFNAT 129 (145)
T ss_pred ecCCCCCceecCceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCC-ceEEEEEEeccc
Confidence 433 567899999999975311 1255555665532233 234688877654
No 241
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=60.02 E-value=10 Score=44.38 Aligned_cols=14 Identities=14% Similarity=0.043 Sum_probs=7.5
Q ss_pred hhhcccCCccccCC
Q 007417 9 DKVSNYDNKERLGD 22 (604)
Q Consensus 9 ~~~~~~n~~~~~gr 22 (604)
+|-+-.....|.|+
T Consensus 1679 Rase~qesl~iR~d 1692 (3015)
T KOG0943|consen 1679 RASEIQESLPIRGD 1692 (3015)
T ss_pred hhhhhhhcccccCC
Confidence 34444455566666
No 242
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=59.09 E-value=2.5 Score=45.08 Aligned_cols=71 Identities=11% Similarity=0.169 Sum_probs=52.7
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCee
Q 007417 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVI 217 (604)
Q Consensus 147 ~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l 217 (604)
....++|||+|+++..+-.+|..+++.+--+..+-+.....-.+...+.+|.|+-.-....|+.+||+.-|
T Consensus 228 ~hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl 298 (648)
T KOG2295|consen 228 THKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRL 298 (648)
T ss_pred hhHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccc
Confidence 34679999999999999999999999986666665543333345677899999876666666666665444
No 243
>PHA02664 hypothetical protein; Provisional
Probab=58.10 E-value=29 Score=34.66 Aligned_cols=16 Identities=6% Similarity=-0.053 Sum_probs=10.9
Q ss_pred ccchhhhcccCCcccc
Q 007417 5 KFSEDKVSNYDNKERL 20 (604)
Q Consensus 5 ~~~~~~~~~~n~~~~~ 20 (604)
..+|+|+...||....
T Consensus 392 aaae~~~~~a~gsp~a 407 (534)
T PHA02664 392 AAAERAANGARGSPMA 407 (534)
T ss_pred hhhhhhhccccCCccc
Confidence 3567888877776554
No 244
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=56.13 E-value=5.9 Score=43.90 Aligned_cols=12 Identities=8% Similarity=0.124 Sum_probs=6.7
Q ss_pred CCcccChhhHHh
Q 007417 336 VPPHWKENQIRD 347 (604)
Q Consensus 336 Lp~~~t~~~l~~ 347 (604)
+|-.+|+++|..
T Consensus 552 ~~l~vTledll~ 563 (822)
T KOG2141|consen 552 LPLSVTLEDLLH 563 (822)
T ss_pred ccccccHHHhhC
Confidence 444566666654
No 245
>COG4907 Predicted membrane protein [Function unknown]
Probab=56.12 E-value=21 Score=37.64 Aligned_cols=22 Identities=14% Similarity=0.154 Sum_probs=13.1
Q ss_pred hhhHHhhhcccC-----CEEEEEEeec
Q 007417 342 ENQIRDQIKGYG-----DVIRIVLARN 363 (604)
Q Consensus 342 ~~~l~~~F~~~G-----~v~~v~i~~d 363 (604)
|+..+.+++.|. .++.|.+..+
T Consensus 488 W~aFKnfLsd~s~lke~~pesI~~W~~ 514 (595)
T COG4907 488 WQAFKNFLSDYSQLKEAKPESIHLWEQ 514 (595)
T ss_pred HHHHHHHHHhHHHHhhCCCcceehHhh
Confidence 566666666654 3456666544
No 246
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=54.33 E-value=27 Score=34.35 Aligned_cols=56 Identities=18% Similarity=0.378 Sum_probs=39.6
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeeh-------HHHHHHHHhc
Q 007417 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANK-------EHAKRALTEM 212 (604)
Q Consensus 152 ~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~-------e~A~~Al~~l 212 (604)
-|+|+|||.++.-.||+..+.+-+-+ -..|.- .-+.|-||+.|.+. .++.+|+..+
T Consensus 332 di~~~nl~rd~rv~dlk~~lr~~~~~-pm~isw----kg~~~k~flh~~~~~~~~~~~~~~~~~~~s~ 394 (396)
T KOG4410|consen 332 DIKLTNLSRDIRVKDLKSELRKRECT-PMSISW----KGHFGKCFLHFGNRKGVPSTQDDMDKVLKSL 394 (396)
T ss_pred ceeeccCccccchHHHHHHHHhcCCC-ceeEee----ecCCcceeEecCCccCCCCCchHHHHHhccC
Confidence 39999999999999999999887633 122221 23577899999764 4455555544
No 247
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=54.11 E-value=22 Score=32.59 Aligned_cols=9 Identities=11% Similarity=0.523 Sum_probs=4.5
Q ss_pred cCCEEEEEE
Q 007417 352 YGDVIRIVL 360 (604)
Q Consensus 352 ~G~v~~v~i 360 (604)
||.|.++.+
T Consensus 98 fG~i~d~~f 106 (215)
T KOG3262|consen 98 FGPINDVHF 106 (215)
T ss_pred cccccccEE
Confidence 455555444
No 248
>CHL00114 psbX photosystem II protein X; Reviewed
Probab=54.02 E-value=4.7 Score=26.81 Aligned_cols=18 Identities=33% Similarity=0.362 Sum_probs=14.5
Q ss_pred chhhhhhHHhhhhhcccc
Q 007417 578 MASYLSNFLLSLIYVSNT 595 (604)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~ 595 (604)
|-|-|.||+.||++-...
T Consensus 1 MTpSLsnF~~SL~~Ga~i 18 (39)
T CHL00114 1 MTPSLSAFINSLLLGAII 18 (39)
T ss_pred CChhHHHHHHHHHHHHHH
Confidence 568899999999876544
No 249
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=53.56 E-value=20 Score=42.41 Aligned_cols=6 Identities=17% Similarity=0.407 Sum_probs=2.5
Q ss_pred eEEEEE
Q 007417 194 YAFVKF 199 (604)
Q Consensus 194 ~afV~F 199 (604)
.|-|+|
T Consensus 1442 wcev~~ 1447 (1640)
T KOG0262|consen 1442 WCEVEL 1447 (1640)
T ss_pred EEEEEE
Confidence 344444
No 250
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=53.27 E-value=18 Score=38.74 Aligned_cols=8 Identities=25% Similarity=0.252 Sum_probs=3.3
Q ss_pred CCCCCCCH
Q 007417 157 GLDRDATQ 164 (604)
Q Consensus 157 nLp~~~te 164 (604)
|-|..+|-
T Consensus 534 napkra~s 541 (615)
T KOG0526|consen 534 NAPKRATS 541 (615)
T ss_pred CCCccchh
Confidence 34444433
No 251
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=52.73 E-value=18 Score=27.77 Aligned_cols=62 Identities=18% Similarity=0.335 Sum_probs=46.4
Q ss_pred HHHHHHhhccC-CeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCCCC
Q 007417 165 EDVRKVFERIG-EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSED 229 (604)
Q Consensus 165 ~dL~~~F~~~G-~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~~ 229 (604)
++|.+-|...| +|..|.-+..+.++.....-||+.....+...++. =..|++..+.|++...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~~---Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIYK---IKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccceee---hHhhCCeEEEEecCCC
Confidence 46888888888 78899888888788888999999887766444433 3456777777766544
No 252
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=52.55 E-value=6.3 Score=44.04 Aligned_cols=11 Identities=18% Similarity=0.114 Sum_probs=5.8
Q ss_pred cCCCcchhhhc
Q 007417 25 KQKEPALVEVA 35 (604)
Q Consensus 25 ~~~~~~avd~a 35 (604)
|+.+.|.+|-.
T Consensus 794 kk~eeIp~de~ 804 (988)
T KOG2038|consen 794 KKEEEIPPDEL 804 (988)
T ss_pred hhhccCChhHH
Confidence 34555665544
No 253
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=51.23 E-value=22 Score=27.19 Aligned_cols=62 Identities=15% Similarity=0.211 Sum_probs=46.2
Q ss_pred HHHHHHhhccC-CeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCCCC
Q 007417 165 EDVRKVFERIG-EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSED 229 (604)
Q Consensus 165 ~dL~~~F~~~G-~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~~ 229 (604)
++|++-|+..| +|..|+-+..+.+..+...-||+.....+-.. .++=..|++.++.|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcc
Confidence 46888899999 79999999988888888889999887654444 2334467777777766543
No 254
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=50.92 E-value=12 Score=40.03 Aligned_cols=22 Identities=14% Similarity=0.214 Sum_probs=14.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHhh
Q 007417 151 HEIFIGGLDRDATQEDVRKVFE 172 (604)
Q Consensus 151 ~~vfV~nLp~~~te~dL~~~F~ 172 (604)
++-.|+.||--++-++...++.
T Consensus 799 rk~~lk~lpvfa~ad~ya~~ld 820 (821)
T COG5593 799 RKNMLKSLPVFASADDYAQYLD 820 (821)
T ss_pred HHHHHhcCCcccchHHHHHHhc
Confidence 3346778888777777666543
No 255
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=48.36 E-value=15 Score=43.25 Aligned_cols=7 Identities=14% Similarity=0.297 Sum_probs=3.1
Q ss_pred hhhhccc
Q 007417 8 EDKVSNY 14 (604)
Q Consensus 8 ~~~~~~~ 14 (604)
|+||+-+
T Consensus 1637 eraia~~ 1643 (3015)
T KOG0943|consen 1637 ERAIAPL 1643 (3015)
T ss_pred hccccCC
Confidence 4444433
No 256
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=48.07 E-value=8.4 Score=39.63 Aligned_cols=8 Identities=50% Similarity=0.505 Sum_probs=4.1
Q ss_pred CCHHHHHH
Q 007417 162 ATQEDVRK 169 (604)
Q Consensus 162 ~te~dL~~ 169 (604)
+|++|++.
T Consensus 190 LT~eDF~k 197 (324)
T PF05285_consen 190 LTPEDFAK 197 (324)
T ss_pred CCHHHHHH
Confidence 45555443
No 257
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=47.66 E-value=60 Score=26.06 Aligned_cols=53 Identities=25% Similarity=0.348 Sum_probs=41.3
Q ss_pred CCCCCCCHHHHHHHhhc-cC-CeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhc
Q 007417 157 GLDRDATQEDVRKVFER-IG-EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212 (604)
Q Consensus 157 nLp~~~te~dL~~~F~~-~G-~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l 212 (604)
-++..++..+|++.++. || .|.+|..+.-+ ....-|||.+.....|......+
T Consensus 27 ~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~---~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 27 IVDRRATKPDIKRAVEELFDVKVEKVNTLITP---KGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCcEEEEEEeCCCCcHHHHHHhh
Confidence 35788999999999998 67 68888876553 33456999999999998876653
No 258
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=47.63 E-value=12 Score=39.31 Aligned_cols=20 Identities=15% Similarity=0.317 Sum_probs=10.7
Q ss_pred CCCCEEEEcCCCCCCCHHHH
Q 007417 148 KKEHEIFIGGLDRDATQEDV 167 (604)
Q Consensus 148 ~~~~~vfV~nLp~~~te~dL 167 (604)
....+||-+-..+.+.-++|
T Consensus 314 ~~dYkvftr~fDe~v~aeel 333 (620)
T COG4547 314 EVDYKVFTREFDEIVLAEEL 333 (620)
T ss_pred cccccccchhhhhhhhHHHh
Confidence 34566666665555444443
No 259
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=47.50 E-value=16 Score=40.76 Aligned_cols=24 Identities=8% Similarity=0.189 Sum_probs=11.7
Q ss_pred EEEeCCHHHHHHHHHHhcCCeeCC
Q 007417 374 FIDFSTHEAAVACINAINNKEFSD 397 (604)
Q Consensus 374 fV~F~~~~~A~~A~~~lng~~~~g 397 (604)
|+.--+.++-..|.+.|-...+.|
T Consensus 625 FcsImsaeDyiDAFEklLkL~LK~ 648 (822)
T KOG2141|consen 625 FCSIMSAEDYIDAFEKLLKLSLKG 648 (822)
T ss_pred eeeeecchHHHHHHHHHHhccCCC
Confidence 444445555555555444344444
No 260
>PF03344 Daxx: Daxx Family; InterPro: IPR005012 Daxx is a ubiquitously expressed protein that functions, in part, as a transcriptional co-repressor through its interaction with a growing number of nuclear, DNA-associated proteins. Human Daxx contains four structural domains commonly found in transcriptional regulatory proteins: two predicted paired amphipathic helices, an acid-rich domain and a Ser/Pro/Thr (SPT)-rich domain. The post-translational modification status of the SPT-domain of hDaxx regulates its association with transcription factors such as Pax3 and ETS-1, effectively bringing hDaxx to sites of active transcription. Through its presence at the site of active transcription, hDaxx could then be able to associate with acetylated histones present in the nucleosomes and Dek that is associated with chromatin. Through its association with the SPT-domain of hDaxx, histone deacetylases may also be brought to the site of active transcription. As a consequence, nucleosomes in the vicinity of the site of active transcription will have the histone tails deacetylated, allowing the deactylated tail to bind to DNA, thereby leading to an inactive chromatin structure and transcriptional repression []. The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis as a component of nuclear promyelocytic leukemia protein (PML) oncogenic domains (PODS). Daxx associates with PODs through a direct interaction with PML, a critical component of PODs. The interaction is a dynamic, cell cycle regulated event and is dependent on the post-translational modification of PML by the small ubiquitin-related modifier SUMO-1. ; PDB: 2KZS_A 2KZU_A.
Probab=46.95 E-value=6.4 Score=44.73 Aligned_cols=6 Identities=17% Similarity=0.196 Sum_probs=0.0
Q ss_pred chhhhc
Q 007417 30 ALVEVA 35 (604)
Q Consensus 30 ~avd~a 35 (604)
|.-.||
T Consensus 387 v~~ky~ 392 (713)
T PF03344_consen 387 VIEKYA 392 (713)
T ss_dssp ------
T ss_pred cccccc
Confidence 333333
No 261
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=45.90 E-value=11 Score=41.16 Aligned_cols=7 Identities=14% Similarity=-0.016 Sum_probs=3.2
Q ss_pred cchhhhc
Q 007417 29 PALVEVA 35 (604)
Q Consensus 29 ~~avd~a 35 (604)
++..-|+
T Consensus 895 ~~nlnW~ 901 (1001)
T COG5406 895 SANLNWN 901 (1001)
T ss_pred cccccHH
Confidence 3444554
No 262
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=44.67 E-value=8.5 Score=39.60 Aligned_cols=9 Identities=11% Similarity=-0.086 Sum_probs=3.9
Q ss_pred CcHHHHHHH
Q 007417 242 WTKEAIKQK 250 (604)
Q Consensus 242 ~te~~l~~~ 250 (604)
++..+|..+
T Consensus 231 v~~~dIe~~ 239 (324)
T PF05285_consen 231 VDPSDIEGF 239 (324)
T ss_pred CCHHHHHhH
Confidence 444444433
No 263
>PF09073 BUD22: BUD22; InterPro: IPR015158 BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal [].
Probab=44.54 E-value=15 Score=39.49 Aligned_cols=21 Identities=14% Similarity=0.061 Sum_probs=10.2
Q ss_pred HHHHHHHHHHhcCCeeCCCcc
Q 007417 380 HEAAVACINAINNKEFSDGNS 400 (604)
Q Consensus 380 ~~~A~~A~~~lng~~~~g~~~ 400 (604)
=+++.+|-+.+....|.|+.|
T Consensus 409 WeAkkk~Ke~~~~a~FqGKKI 429 (432)
T PF09073_consen 409 WEAKKKAKEKQKIAKFQGKKI 429 (432)
T ss_pred HHHHHHHHHHhccCCCCCCcc
Confidence 344445544444455555543
No 264
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=43.62 E-value=51 Score=24.68 Aligned_cols=18 Identities=22% Similarity=0.667 Sum_probs=14.0
Q ss_pred HHHHHHhhccCCeEEEEE
Q 007417 165 EDVRKVFERIGEVIEVRL 182 (604)
Q Consensus 165 ~dL~~~F~~~G~V~~v~i 182 (604)
.+|+++|+..|+|.-+-+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 479999999999854433
No 265
>PF06596 PsbX: Photosystem II reaction centre X protein (PsbX); InterPro: IPR009518 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. The low molecular weight transmembrane protein PsbX found in PSII is associated with the oxygen-evolving complex. Its expression is light-regulated. PsbX appears to be involved in the regulation of the amount of PSII [], and may be involved in the binding or turnover of quinone molecules at the Qb (PsbA) site [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0016020 membrane; PDB: 3ARC_x 3A0H_X 3A0B_X 3PRR_X 1S5L_x 4FBY_j 3PRQ_X 3KZI_X 3BZ2_X 3BZ1_X.
Probab=42.92 E-value=7 Score=26.14 Aligned_cols=16 Identities=56% Similarity=0.694 Sum_probs=12.0
Q ss_pred chhhhhhHHhhhhhcc
Q 007417 578 MASYLSNFLLSLIYVS 593 (604)
Q Consensus 578 ~~~~~~~~~~~~~~~~ 593 (604)
|-|-|.|||+||+.-.
T Consensus 1 mTpSL~nfl~Sl~aG~ 16 (39)
T PF06596_consen 1 MTPSLSNFLLSLVAGA 16 (39)
T ss_dssp --HHHHHHHHHHHHHH
T ss_pred CCHhHHHHHHHHHhhh
Confidence 5678999999998755
No 266
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=41.88 E-value=2.1e+02 Score=30.45 Aligned_cols=6 Identities=33% Similarity=0.407 Sum_probs=3.1
Q ss_pred CCcccc
Q 007417 568 AHGVKR 573 (604)
Q Consensus 568 ~~~~~~ 573 (604)
+||.|-
T Consensus 182 ~rG~kV 187 (641)
T KOG3915|consen 182 LRGAKV 187 (641)
T ss_pred ecCcee
Confidence 456553
No 267
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=41.44 E-value=15 Score=33.65 Aligned_cols=70 Identities=14% Similarity=0.130 Sum_probs=46.2
Q ss_pred ccccCCCCcccC-----hhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCC-ccEEE
Q 007417 330 TVFLDGVPPHWK-----ENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG-NSKVK 403 (604)
Q Consensus 330 ~l~v~nLp~~~t-----~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~-~~~v~ 403 (604)
.+.+.+|+..+- ......+|.+|-...-..+++ +.++..|-|.+++.|..|...++.+.|.|+ .+++.
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~y 85 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLY 85 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEE
Confidence 345555554332 233445666665544444443 245677899999999999999999999998 65555
Q ss_pred Ee
Q 007417 404 LR 405 (604)
Q Consensus 404 ~~ 405 (604)
++
T Consensus 86 fa 87 (193)
T KOG4019|consen 86 FA 87 (193)
T ss_pred Ec
Confidence 54
No 268
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=41.44 E-value=32 Score=35.28 Aligned_cols=57 Identities=18% Similarity=0.294 Sum_probs=44.1
Q ss_pred EEEEEeehHHHHHHHHhcCCCeeeCcccccCCCCCCCcceecccCCCCcHHHHHHHHHh
Q 007417 195 AFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKD 253 (604)
Q Consensus 195 afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~~~~~l~v~nlp~~~te~~l~~~f~~ 253 (604)
|||.|.+..+|..|++.+... ..+.+.+..+.+.+.|.=.||........++..+..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~--~~~~~~v~~APeP~DI~W~NL~~~~~~r~~R~~~~~ 57 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSK--RPNSWRVSPAPEPDDIIWENLSISSKQRFLRRIIVN 57 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcC--CCCCceEeeCCCcccccccccCCChHHHHHHHHHHH
Confidence 799999999999999965433 235668888888888888999777777777666544
No 269
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=40.35 E-value=52 Score=29.29 Aligned_cols=98 Identities=10% Similarity=0.065 Sum_probs=64.3
Q ss_pred CCCHHHHHHHhhc-cCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCCCCC---------
Q 007417 161 DATQEDVRKVFER-IGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDN--------- 230 (604)
Q Consensus 161 ~~te~dL~~~F~~-~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~~~--------- 230 (604)
..+-..|...+.+ .+....+.+.. ...++..+.|.+.+++.+++.. ....+.+..+.+..-.+.
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~-----l~~~~fl~~F~~~~d~~~vl~~-~p~~~~~~~~~l~~W~~~~~~~~~~~~ 101 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRD-----LGDNLFLFQFESEEDRQRVLKG-GPWNFNGHFLILQRWSPDFNPSEVKFE 101 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEE-----eCCCeEEEEEEeccceeEEEec-ccccccccchhhhhhccccccccccee
Confidence 3566667766655 23332333321 2357899999999999999984 444566666655443321
Q ss_pred ---CcceecccCCC-CcHHHHHHHHHhcCCcceeEEEEec
Q 007417 231 ---DTLFVGNICNT-WTKEAIKQKLKDYGVEGVENINLVS 266 (604)
Q Consensus 231 ---~~l~v~nlp~~-~te~~l~~~f~~~G~~~v~~i~i~~ 266 (604)
-=|.|.+||.. ++++.++.+.+..|. +..+....
T Consensus 102 ~~~vWVri~glP~~~~~~~~~~~i~~~iG~--~i~vD~~t 139 (153)
T PF14111_consen 102 HIPVWVRIYGLPLHLWSEEILKAIGSKIGE--PIEVDENT 139 (153)
T ss_pred ccchhhhhccCCHHHhhhHHHHHHHHhcCC--eEEEEcCC
Confidence 12456799987 777889999999998 77766543
No 270
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=38.63 E-value=1.1e+02 Score=24.18 Aligned_cols=56 Identities=25% Similarity=0.328 Sum_probs=41.8
Q ss_pred EEcCCCCCCCHHHHHHHhhc-cC-CeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhc
Q 007417 154 FIGGLDRDATQEDVRKVFER-IG-EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212 (604)
Q Consensus 154 fV~nLp~~~te~dL~~~F~~-~G-~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l 212 (604)
|+=.++.+++..+|++.+++ |+ +|..|..+.-+ ...--|||.+...+.|......+
T Consensus 17 y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~---~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 17 LTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP---RGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCceEEEEEECCCCcHHHHHHhh
Confidence 44446789999999999988 66 67777776543 23456999999988888766543
No 271
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=36.99 E-value=40 Score=30.96 Aligned_cols=58 Identities=21% Similarity=0.240 Sum_probs=40.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCC-CCCcceEEEEEeehHHHHHHHHh
Q 007417 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFST-NRNKGYAFVKFANKEHAKRALTE 211 (604)
Q Consensus 150 ~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~t-g~~kG~afV~F~~~e~A~~Al~~ 211 (604)
.++++.. +.+...++|..+-+ |.+..|.+-+.... ...+|..||.|.+.+.|.++++.
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 4666766 55555566666666 77877776433211 25689999999999999998886
No 272
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=36.66 E-value=33 Score=36.21 Aligned_cols=8 Identities=13% Similarity=0.273 Sum_probs=3.7
Q ss_pred eeCccccc
Q 007417 217 ICGKRCGT 224 (604)
Q Consensus 217 l~g~~i~v 224 (604)
+.||+|.|
T Consensus 426 MrGRpItv 433 (620)
T COG4547 426 MRGRPITV 433 (620)
T ss_pred cCCcceeh
Confidence 34555443
No 273
>PHA00370 III attachment protein
Probab=34.22 E-value=1.9e+02 Score=28.18 Aligned_cols=14 Identities=43% Similarity=0.755 Sum_probs=6.1
Q ss_pred hhhhhccccceeee
Q 007417 587 LSLIYVSNTFVPIL 600 (604)
Q Consensus 587 ~~~~~~~~~~~~~~ 600 (604)
+..+||-.+|.-||
T Consensus 279 lTFwyVf~S~tsiL 292 (297)
T PHA00370 279 LTFWYVFQSFTSIL 292 (297)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 274
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=34.11 E-value=51 Score=32.45 Aligned_cols=47 Identities=9% Similarity=0.210 Sum_probs=35.3
Q ss_pred cccccCCCCcccChhhHHhhhcccCCE-EEEEEeecCCCCCcceEEEEEeCCHH
Q 007417 329 KTVFLDGVPPHWKENQIRDQIKGYGDV-IRIVLARNMSTAKRKDYGFIDFSTHE 381 (604)
Q Consensus 329 ~~l~v~nLp~~~t~~~l~~~F~~~G~v-~~v~i~~d~~~g~~~G~afV~F~~~~ 381 (604)
+-|++.|||.++.-.+|+..+.+-+-+ ..+.+ ..+.|-||+.|.+..
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNRK 378 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEee------ecCCcceeEecCCcc
Confidence 469999999999999999999887633 23322 235778999997643
No 275
>COG5129 MAK16 Nuclear protein with HMG-like acidic region [General function prediction only]
Probab=33.84 E-value=34 Score=32.26 Aligned_cols=8 Identities=25% Similarity=0.102 Sum_probs=3.6
Q ss_pred cchhhhcc
Q 007417 29 PALVEVAK 36 (604)
Q Consensus 29 ~~avd~a~ 36 (604)
++.|+.-+
T Consensus 178 pLnv~e~~ 185 (303)
T COG5129 178 PLNVREHL 185 (303)
T ss_pred ccchHHHH
Confidence 44444433
No 276
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=33.15 E-value=55 Score=32.64 Aligned_cols=15 Identities=7% Similarity=0.069 Sum_probs=7.5
Q ss_pred ccCCCCcHHHHHHHH
Q 007417 237 NICNTWTKEAIKQKL 251 (604)
Q Consensus 237 nlp~~~te~~l~~~f 251 (604)
+|...+|+....++.
T Consensus 119 GLEg~ltD~~a~~iI 133 (271)
T COG1512 119 GLEGVLTDAQAGRII 133 (271)
T ss_pred CcccccChHHHHHHH
Confidence 455555555444443
No 277
>PLN00088 predicted protein; Provisional
Probab=32.60 E-value=21 Score=29.97 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=17.7
Q ss_pred chhhhhhHHhhhhhccccceeee
Q 007417 578 MASYLSNFLLSLIYVSNTFVPIL 600 (604)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~ 600 (604)
+-|-|.|||+|||+=.+..+||.
T Consensus 90 vTPSLsNFL~SLvaGgvVv~pI~ 112 (127)
T PLN00088 90 VSPSLKNLLLSVVAGGVVITVIG 112 (127)
T ss_pred CChhHHHHHHHHHhhhhhhhhhh
Confidence 45778999999998777666664
No 278
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=32.54 E-value=18 Score=37.35 Aligned_cols=62 Identities=16% Similarity=0.358 Sum_probs=52.3
Q ss_pred CCCEEEEcCCCCCCCHH--------HHHHHhhc--cCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHH
Q 007417 149 KEHEIFIGGLDRDATQE--------DVRKVFER--IGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~--------dL~~~F~~--~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~ 210 (604)
..+.+|+.+.....+.+ ++..+|.. ++.+..|+..++.....++|..|++|...+.|++.+.
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 45677888887765554 99999999 6788999998887677899999999999999999885
No 279
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=32.24 E-value=49 Score=37.42 Aligned_cols=11 Identities=18% Similarity=0.422 Sum_probs=5.5
Q ss_pred HHHHHHHHhcC
Q 007417 245 EAIKQKLKDYG 255 (604)
Q Consensus 245 ~~l~~~f~~~G 255 (604)
..|+.+|.+.|
T Consensus 337 krL~~lLAkMG 347 (622)
T PF02724_consen 337 KRLHKLLAKMG 347 (622)
T ss_pred HHHHHHHHHhC
Confidence 44455555554
No 280
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=32.04 E-value=42 Score=28.78 Aligned_cols=51 Identities=14% Similarity=0.205 Sum_probs=28.1
Q ss_pred EEEEcCCCCC---------CCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHH
Q 007417 152 EIFIGGLDRD---------ATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHA 205 (604)
Q Consensus 152 ~vfV~nLp~~---------~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A 205 (604)
++.|-|++.. .+.+.|++.|..|..+. |+.+.++ .-+.|++.|+|...-..
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~G 69 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSG 69 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHH
Confidence 5566676543 35578999999998874 5555553 35689999999865443
No 281
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=29.55 E-value=60 Score=33.57 Aligned_cols=70 Identities=14% Similarity=0.162 Sum_probs=50.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccC-CeEEEEEeecCCC--CCCcceEEEEEeehHHHHHHHHhcCCCeee
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFERIG-EVIEVRLHKNFST--NRNKGYAFVKFANKEHAKRALTEMKNPVIC 218 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~~G-~V~~v~i~~d~~t--g~~kG~afV~F~~~e~A~~Al~~l~~~~l~ 218 (604)
.-..|.|++||+..|+++|.+....|- .|....+.....+ ....+.|||.|...++...-...+++.++.
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 457899999999999999988877764 2444444421111 123678999999999988888877776543
No 282
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=29.18 E-value=48 Score=28.41 Aligned_cols=45 Identities=4% Similarity=0.226 Sum_probs=26.4
Q ss_pred cChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCH-HHHHHHH
Q 007417 340 WKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTH-EAAVACI 387 (604)
Q Consensus 340 ~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~-~~A~~A~ 387 (604)
++.+.|++.|+.|..+. ++.+.+. ..++|+++|+|.+- .-...|+
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHH
Confidence 35578999999997764 5566664 35789999999763 3334444
No 283
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.58 E-value=73 Score=33.03 Aligned_cols=63 Identities=11% Similarity=0.192 Sum_probs=46.7
Q ss_pred ccccccCCCCcccChhhHHhhhcccCCE-EEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCC
Q 007417 328 VKTVFLDGVPPHWKENQIRDQIKGYGDV-IRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG 398 (604)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v-~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~ 398 (604)
.+.|-|.++|...-.+||-..|+.|+.- -+|+++.+. .+|..|.+...|..||- |...++.-|
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt-~kh~~lKiR 454 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALT-LKHDWLKIR 454 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhh-ccCceEEee
Confidence 4688999999999889999999998632 345555442 68999999999999985 443444433
No 284
>KOG2773 consensus Apoptosis antagonizing transcription factor/protein transport protein [Transcription; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.56 E-value=41 Score=35.48 Aligned_cols=11 Identities=0% Similarity=-0.006 Sum_probs=5.6
Q ss_pred eCCCccEEEEe
Q 007417 395 FSDGNSKVKLR 405 (604)
Q Consensus 395 ~~g~~~~v~~~ 405 (604)
=.||+|+..+.
T Consensus 444 SKgRKLrY~Vh 454 (483)
T KOG2773|consen 444 SKGRKLRYHVH 454 (483)
T ss_pred ccCceeeeehh
Confidence 35555555443
No 285
>PRK14891 50S ribosomal protein L24e/unknown domain fusion protein; Provisional
Probab=27.38 E-value=19 Score=31.08 Aligned_cols=10 Identities=20% Similarity=0.106 Sum_probs=6.1
Q ss_pred Ccchhhhccc
Q 007417 28 EPALVEVAKH 37 (604)
Q Consensus 28 ~~~avd~a~~ 37 (604)
++--|.|.+-
T Consensus 46 nPRKlkWT~~ 55 (131)
T PRK14891 46 EARDLEWTEA 55 (131)
T ss_pred CCccchhHHH
Confidence 4556677654
No 286
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=27.25 E-value=47 Score=31.89 Aligned_cols=37 Identities=16% Similarity=0.334 Sum_probs=30.6
Q ss_pred hccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEE
Q 007417 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVR 181 (604)
Q Consensus 145 ~~~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~ 181 (604)
.......+||+-|||..+|++.|..+.+++|-|..+.
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 3444678999999999999999999999998655443
No 287
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=27.24 E-value=25 Score=33.65 Aligned_cols=11 Identities=18% Similarity=0.223 Sum_probs=3.6
Q ss_pred HHHhcCCeeCC
Q 007417 387 INAINNKEFSD 397 (604)
Q Consensus 387 ~~~lng~~~~g 397 (604)
+..+|+..++-
T Consensus 112 v~~fnnY~~Dp 122 (214)
T PF04959_consen 112 VEYFNNYLLDP 122 (214)
T ss_dssp HHHHHHH----
T ss_pred HHHHHHHhcCc
Confidence 34556555543
No 288
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=27.23 E-value=47 Score=32.48 Aligned_cols=68 Identities=16% Similarity=0.424 Sum_probs=42.8
Q ss_pred cccccccCCCCcc------------cChhhHHhhhcccCCEEEEEEee-----cCCCCCcce-----EE---------EE
Q 007417 327 HVKTVFLDGVPPH------------WKENQIRDQIKGYGDVIRIVLAR-----NMSTAKRKD-----YG---------FI 375 (604)
Q Consensus 327 ~~~~l~v~nLp~~------------~t~~~l~~~F~~~G~v~~v~i~~-----d~~~g~~~G-----~a---------fV 375 (604)
...+|++-+||-. -+++.|+..|..||.|..|.|+. ...+++..| |+ ||
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayv 227 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYV 227 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHH
Confidence 3457888888753 24678999999999999888742 234555543 33 34
Q ss_pred EeCCHHHHHHHHHHhcCCe
Q 007417 376 DFSTHEAAVACINAINNKE 394 (604)
Q Consensus 376 ~F~~~~~A~~A~~~lng~~ 394 (604)
.|-...-...|+.+|.|..
T Consensus 228 qfmeykgfa~amdalr~~k 246 (445)
T KOG2891|consen 228 QFMEYKGFAQAMDALRGMK 246 (445)
T ss_pred HHHHHHhHHHHHHHHhcch
Confidence 4444444455666665543
No 289
>KOG2192 consensus PolyC-binding hnRNP-K protein HRB57A/hnRNP, contains KH domain [RNA processing and modification; General function prediction only]
Probab=27.08 E-value=2.7e+02 Score=27.33 Aligned_cols=11 Identities=9% Similarity=0.317 Sum_probs=4.5
Q ss_pred HHHhcCCeeCC
Q 007417 387 INAINNKEFSD 397 (604)
Q Consensus 387 ~~~lng~~~~g 397 (604)
+..+.-..|.|
T Consensus 188 l~~i~e~pikg 198 (390)
T KOG2192|consen 188 LDLISESPIKG 198 (390)
T ss_pred HHHhhcCCcCC
Confidence 33334444443
No 290
>KOG2147 consensus Nucleolar protein involved in 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=25.43 E-value=1.4e+02 Score=33.77 Aligned_cols=18 Identities=17% Similarity=0.290 Sum_probs=13.3
Q ss_pred CCCC----CCHHHHHHHhhccC
Q 007417 158 LDRD----ATQEDVRKVFERIG 175 (604)
Q Consensus 158 Lp~~----~te~dL~~~F~~~G 175 (604)
||+. .|-++|..+++++-
T Consensus 388 lpfti~~Pk~yeef~~Ll~k~s 409 (823)
T KOG2147|consen 388 LPFTIECPKNYEEFLALLEKLS 409 (823)
T ss_pred CCeeecCCcCHHHHHHHHHccC
Confidence 6664 47788888888875
No 291
>PRK04989 psbM photosystem II reaction center protein M; Provisional
Probab=24.64 E-value=20 Score=23.25 Aligned_cols=24 Identities=38% Similarity=0.544 Sum_probs=16.2
Q ss_pred chhhhhhHHhhhhhcccc--ceeeee
Q 007417 578 MASYLSNFLLSLIYVSNT--FVPILY 601 (604)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~--~~~~~~ 601 (604)
|+--+-.|+.++.+|++| |+-|||
T Consensus 1 MevN~lgfiAt~Lfi~iPt~FLlilY 26 (35)
T PRK04989 1 MEVNDLGFVASLLFVLVPTVFLIILY 26 (35)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556788888777655 777777
No 292
>smart00157 PRP Major prion protein. The prion protein is a major component of scrapie-associated fibrils in Creutzfeldt-Jakob disease, kuru, Gerstmann-Straussler syndrome and bovine spongiform encephalopathy.
Probab=24.16 E-value=5.9e+02 Score=23.73 Aligned_cols=15 Identities=13% Similarity=0.250 Sum_probs=10.2
Q ss_pred hhhhHHhhhhhcccc
Q 007417 581 YLSNFLLSLIYVSNT 595 (604)
Q Consensus 581 ~~~~~~~~~~~~~~~ 595 (604)
--.+|+--|+-|+++
T Consensus 148 s~~~Fv~dC~N~tv~ 162 (217)
T smart00157 148 NQNNFVHDCVNITIK 162 (217)
T ss_pred chhhHHHHHHhhhee
Confidence 346788777777665
No 293
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=23.86 E-value=37 Score=36.32 Aligned_cols=19 Identities=26% Similarity=0.508 Sum_probs=11.2
Q ss_pred eEEEEEeehHHHHHHHHhc
Q 007417 194 YAFVKFANKEHAKRALTEM 212 (604)
Q Consensus 194 ~afV~F~~~e~A~~Al~~l 212 (604)
+-.=.|...+.|-+..+.|
T Consensus 211 W~HDrF~e~eQaPKSr~eL 229 (694)
T KOG4264|consen 211 WKHDRFDEKEQAPKSRKEL 229 (694)
T ss_pred cccccchhhhcCchHHHHH
Confidence 4445577777766655543
No 294
>PF05470 eIF-3c_N: Eukaryotic translation initiation factor 3 subunit 8 N-terminus; InterPro: IPR008905 The largest of the mammalian translation initiation factors, eIF3, consists of at least eight subunits ranging in mass from 35 to 170 kDa. eIF3 binds to the 40 S ribosome in an early step of translation initiation and promotes the binding of methionyl-tRNAi and mRNA [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005852 eukaryotic translation initiation factor 3 complex
Probab=23.80 E-value=33 Score=38.36 Aligned_cols=11 Identities=18% Similarity=0.522 Sum_probs=5.3
Q ss_pred HHHHHHHHHHh
Q 007417 380 HEAAVACINAI 390 (604)
Q Consensus 380 ~~~A~~A~~~l 390 (604)
..+|..||..|
T Consensus 516 I~eah~~L~el 526 (595)
T PF05470_consen 516 IKEAHQCLSEL 526 (595)
T ss_pred HHHHHHHHHHH
Confidence 44555555444
No 295
>PRK14094 psbM photosystem II reaction center protein M; Provisional
Probab=22.82 E-value=36 Score=23.65 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=16.1
Q ss_pred chhhhhhHHhhhhhcccc--ceeeee
Q 007417 578 MASYLSNFLLSLIYVSNT--FVPILY 601 (604)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~--~~~~~~ 601 (604)
|+--+-.|+.++++|.+| ||-|||
T Consensus 1 MEVN~lgfiAtaLFi~iPT~FLlilY 26 (50)
T PRK14094 1 METTNFGFVASLLFVGVPTIFLIGLF 26 (50)
T ss_pred CcchHHHHHHHHHHHHHHHHHhhhee
Confidence 344455677777776654 778887
No 296
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=22.63 E-value=2.1e+02 Score=28.65 Aligned_cols=79 Identities=9% Similarity=0.224 Sum_probs=56.6
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCC-------CCCcceEEEEEeCCHHHHHHHH----HHhc--CC
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMS-------TAKRKDYGFIDFSTHEAAVACI----NAIN--NK 393 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~-------~g~~~G~afV~F~~~~~A~~A~----~~ln--g~ 393 (604)
.++.|.+.|+..+++-..+-..|.+||.|+.|.++.+.. ..+...-..+.|-+.+.+..-. +.|+ .+
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 457899999999998889999999999999999998751 1223456788998888775432 2222 13
Q ss_pred eeCCCccEEEEe
Q 007417 394 EFSDGNSKVKLR 405 (604)
Q Consensus 394 ~~~g~~~~v~~~ 405 (604)
.+.-..+.+.+.
T Consensus 94 ~L~S~~L~lsFV 105 (309)
T PF10567_consen 94 KLKSESLTLSFV 105 (309)
T ss_pred hcCCcceeEEEE
Confidence 456666666653
No 297
>CHL00080 psbM photosystem II protein M
Probab=21.25 E-value=27 Score=22.44 Aligned_cols=23 Identities=17% Similarity=0.505 Sum_probs=15.4
Q ss_pred hhhhhhHHhhhhhcccc--ceeeee
Q 007417 579 ASYLSNFLLSLIYVSNT--FVPILY 601 (604)
Q Consensus 579 ~~~~~~~~~~~~~~~~~--~~~~~~ 601 (604)
+--+-.|+.++.+|++| |+-|||
T Consensus 2 EvN~lgfiAt~LFi~iPt~FLlily 26 (34)
T CHL00080 2 EVNILAFIATALFILVPTAFLLIIY 26 (34)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455677777777665 677776
No 298
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=21.07 E-value=60 Score=40.13 Aligned_cols=6 Identities=17% Similarity=0.639 Sum_probs=2.5
Q ss_pred EEEEEe
Q 007417 195 AFVKFA 200 (604)
Q Consensus 195 afV~F~ 200 (604)
-||...
T Consensus 314 pyv~l~ 319 (2849)
T PTZ00415 314 PYVTLT 319 (2849)
T ss_pred ceEEEE
Confidence 344443
No 299
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=21.06 E-value=1.4e+02 Score=30.61 Aligned_cols=55 Identities=22% Similarity=0.241 Sum_probs=35.0
Q ss_pred EEEEecCHHHHHHHHHHhCCCCeecCCCCcceeecccCCCCCCChhhhccccccccCCCCcccChhhHHhhh
Q 007417 278 AFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQI 349 (604)
Q Consensus 278 afV~f~~~e~A~~Al~~l~~~~~~~g~~~r~l~v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F 349 (604)
|||+|++..+|..|++.+..... +.+.+..|.. .+-|.-.||........+|..+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~------~~~~v~~APe-----------P~DI~W~NL~~~~~~r~~R~~~ 55 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP------NSWRVSPAPE-----------PDDIIWENLSISSKQRFLRRII 55 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC------CCceEeeCCC-----------cccccccccCCChHHHHHHHHH
Confidence 79999999999999986554432 3344444432 2456667775555555555444
No 300
>PHA00370 III attachment protein
Probab=20.96 E-value=3.8e+02 Score=26.21 Aligned_cols=12 Identities=17% Similarity=0.359 Sum_probs=5.3
Q ss_pred Hhhhhhccccce
Q 007417 586 LLSLIYVSNTFV 597 (604)
Q Consensus 586 ~~~~~~~~~~~~ 597 (604)
+++.|....||+
T Consensus 271 v~s~vly~lTFw 282 (297)
T PHA00370 271 VFAFVLYCLTFW 282 (297)
T ss_pred HHHHHHHHHHHH
Confidence 344444444554
No 301
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=20.48 E-value=25 Score=37.87 Aligned_cols=69 Identities=13% Similarity=0.187 Sum_probs=48.2
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCee
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 395 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~ 395 (604)
..+.||++|+++.++-.+|..+|+.+--+..+-+........-.-++.|+|.---....|+.+||+..+
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl 298 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRL 298 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccc
Confidence 357899999999999999999999986555554433222222344678888776666666667776543
No 302
>TIGR03038 PS_II_psbM photosystem II reaction center protein PsbM. Members of this protein family are the photosystem II reaction center M protein, product of the psbM gene, in Cyanobacteria and their derived organelles in plants. This model resembles Pfam model pfam05151 but has cutoffs set to avoid false-positive matches to similar (not necessarily homologous) sequences in species that are not photosynthetic.
Probab=20.28 E-value=26 Score=22.44 Aligned_cols=24 Identities=29% Similarity=0.642 Sum_probs=15.8
Q ss_pred chhhhhhHHhhhhhcccc--ceeeee
Q 007417 578 MASYLSNFLLSLIYVSNT--FVPILY 601 (604)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~--~~~~~~ 601 (604)
|+--+..|+.++.+|..| |+-|||
T Consensus 1 MEvn~l~fiAt~Lfi~iPt~FLiilY 26 (33)
T TIGR03038 1 MEVNILGFIATLLFILVPTVFLLILY 26 (33)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566788887776654 666776
Done!