Query 007417
Match_columns 604
No_of_seqs 472 out of 3842
Neff 8.9
Searched_HMMs 29240
Date Tue Mar 26 01:18:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007417.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007417hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ghp_A U4/U6 snRNA-associated 100.0 3.4E-42 1.2E-46 349.7 21.8 251 144-407 35-290 (292)
2 3smz_A Protein raver-1, ribonu 100.0 2.4E-41 8.1E-46 342.2 26.0 244 147-407 19-263 (284)
3 4f02_A Polyadenylate-binding p 100.0 1.2E-30 4.2E-35 251.8 15.5 180 149-337 14-201 (213)
4 1b7f_A Protein (SXL-lethal pro 100.0 2.5E-29 8.5E-34 233.0 17.9 165 149-405 2-168 (168)
5 1l3k_A Heterogeneous nuclear r 100.0 1.5E-29 5.1E-34 240.8 16.7 175 146-408 9-183 (196)
6 4f02_A Polyadenylate-binding p 100.0 2.7E-28 9.3E-33 235.4 18.3 169 227-407 12-180 (213)
7 2qfj_A FBP-interacting repress 100.0 2.6E-28 8.7E-33 235.9 17.5 165 149-320 27-208 (216)
8 2qfj_A FBP-interacting repress 100.0 6.3E-28 2.2E-32 233.2 19.5 175 230-411 28-208 (216)
9 3md3_A Nuclear and cytoplasmic 100.0 5.8E-28 2E-32 223.1 18.4 165 231-406 1-165 (166)
10 3nmr_A Cugbp ELAV-like family 100.0 5.1E-28 1.7E-32 225.6 17.1 162 149-315 2-175 (175)
11 1fxl_A Paraneoplastic encephal 100.0 1E-27 3.5E-32 221.7 19.0 158 150-314 2-167 (167)
12 2cjk_A Nuclear polyadenylated 100.0 4.1E-28 1.4E-32 224.6 16.0 159 149-317 2-166 (167)
13 1fxl_A Paraneoplastic encephal 100.0 2E-27 6.7E-32 219.7 19.0 163 230-404 2-164 (167)
14 3md3_A Nuclear and cytoplasmic 100.0 9.8E-28 3.4E-32 221.5 16.4 158 151-316 1-166 (166)
15 3smz_A Protein raver-1, ribonu 99.9 1.3E-27 4.5E-32 241.2 14.7 161 151-319 96-266 (284)
16 3nmr_A Cugbp ELAV-like family 99.9 1.1E-26 3.7E-31 216.6 18.9 168 229-405 2-174 (175)
17 3tyt_A Heterogeneous nuclear r 99.9 2.3E-26 8E-31 219.7 16.9 156 149-314 3-204 (205)
18 2cjk_A Nuclear polyadenylated 99.9 6.3E-27 2.1E-31 216.6 12.3 163 229-406 2-164 (167)
19 3pgw_A U1-A; protein-RNA compl 99.9 5.7E-26 2E-30 228.9 20.4 250 146-406 5-281 (282)
20 2g4b_A Splicing factor U2AF 65 99.9 3.3E-26 1.1E-30 212.8 16.0 153 148-314 2-171 (172)
21 2ghp_A U4/U6 snRNA-associated 99.9 9.3E-27 3.2E-31 236.0 13.3 160 150-317 117-291 (292)
22 2g4b_A Splicing factor U2AF 65 99.9 4.2E-26 1.4E-30 212.1 16.5 160 229-405 3-171 (172)
23 3sde_A Paraspeckle component 1 99.9 3.6E-26 1.2E-30 227.6 15.8 162 147-318 19-180 (261)
24 2yh0_A Splicing factor U2AF 65 99.9 1.3E-25 4.3E-30 213.9 16.4 157 149-319 3-196 (198)
25 1fje_B Nucleolin RBD12, protei 99.9 1.2E-26 4E-31 216.6 7.6 158 146-317 9-174 (175)
26 2yh0_A Splicing factor U2AF 65 99.9 2.3E-25 7.8E-30 212.1 15.7 167 229-407 3-193 (198)
27 3tyt_A Heterogeneous nuclear r 99.9 1.9E-25 6.6E-30 213.3 14.6 157 229-399 3-194 (205)
28 1fje_B Nucleolin RBD12, protei 99.9 1E-25 3.5E-30 210.2 11.8 166 224-406 7-172 (175)
29 2adc_A Polypyrimidine tract-bi 99.9 1.1E-24 3.9E-29 212.4 18.5 155 147-317 31-228 (229)
30 1qm9_A Polypyrimidine tract-bi 99.9 1.1E-24 3.7E-29 207.6 13.8 153 149-317 2-197 (198)
31 2adc_A Polypyrimidine tract-bi 99.9 4.4E-24 1.5E-28 208.2 18.0 165 225-406 29-226 (229)
32 3sde_A Paraspeckle component 1 99.9 3.8E-24 1.3E-28 212.9 16.5 156 228-408 20-179 (261)
33 1qm9_A Polypyrimidine tract-bi 99.9 4.2E-24 1.4E-28 203.5 14.5 160 230-406 3-195 (198)
34 2kn4_A Immunoglobulin G-bindin 99.8 6.6E-20 2.3E-24 167.8 13.7 145 261-408 2-150 (158)
35 4f25_A Polyadenylate-binding p 99.8 1.9E-19 6.4E-24 155.3 8.2 96 149-246 4-113 (115)
36 4fxv_A ELAV-like protein 1; RN 99.8 9.6E-19 3.3E-23 146.3 9.2 82 148-229 17-98 (99)
37 4fxv_A ELAV-like protein 1; RN 99.7 4.7E-18 1.6E-22 142.1 9.0 79 327-405 18-96 (99)
38 2i2y_A Fusion protein consists 99.7 6.1E-18 2.1E-22 153.2 10.3 126 271-406 9-146 (150)
39 1h2v_Z 20 kDa nuclear CAP bind 99.7 9.7E-18 3.3E-22 152.9 10.4 81 327-407 38-118 (156)
40 3pgw_S U1-70K; protein-RNA com 99.7 3.9E-18 1.3E-22 180.7 7.9 81 327-407 101-181 (437)
41 3s8s_A Histone-lysine N-methyl 99.7 1.5E-17 5.3E-22 141.7 9.5 82 148-229 4-85 (110)
42 2lxi_A RNA-binding protein 10; 99.7 2.8E-18 9.7E-23 141.2 4.7 82 150-231 1-84 (91)
43 3q2s_C Cleavage and polyadenyl 99.7 2.1E-18 7.3E-23 167.1 4.6 82 327-408 67-150 (229)
44 2kn4_A Immunoglobulin G-bindin 99.7 1.7E-17 6E-22 151.6 9.9 133 179-320 2-153 (158)
45 2lkz_A RNA-binding protein 5; 99.7 7.3E-18 2.5E-22 139.4 5.4 82 148-229 7-94 (95)
46 3s8s_A Histone-lysine N-methyl 99.7 4.2E-17 1.4E-21 139.0 9.1 78 328-405 6-83 (110)
47 2x1f_A MRNA 3'-END-processing 99.7 5.6E-17 1.9E-21 135.0 8.5 88 149-236 1-88 (96)
48 3lqv_A PRE-mRNA branch site pr 99.7 4.1E-17 1.4E-21 140.7 7.9 104 148-256 6-109 (115)
49 4f25_A Polyadenylate-binding p 99.7 7.7E-17 2.6E-21 138.9 9.3 106 230-344 5-113 (115)
50 3p5t_L Cleavage and polyadenyl 99.7 2.6E-17 8.9E-22 135.2 5.6 79 151-229 2-82 (90)
51 3md1_A Nuclear and cytoplasmic 99.7 1.2E-16 4.1E-21 129.0 9.3 81 150-230 1-81 (83)
52 2lea_A Serine/arginine-rich sp 99.7 2.9E-17 9.8E-22 145.7 5.9 122 277-408 6-127 (135)
53 2dnz_A Probable RNA-binding pr 99.7 1.5E-16 5.2E-21 132.0 9.9 82 148-229 3-84 (95)
54 3mdf_A Peptidyl-prolyl CIS-tra 99.7 9.2E-17 3.1E-21 130.3 8.3 80 148-227 5-84 (85)
55 3ex7_B RNA-binding protein 8A; 99.7 8.5E-17 2.9E-21 141.1 8.7 82 327-408 21-102 (126)
56 3bs9_A Nucleolysin TIA-1 isofo 99.7 9.9E-17 3.4E-21 130.8 8.3 81 149-229 5-85 (87)
57 2lkz_A RNA-binding protein 5; 99.7 2E-17 6.9E-22 136.7 4.2 80 327-406 8-93 (95)
58 2cqd_A RNA-binding region cont 99.7 1.6E-16 5.3E-21 137.2 9.9 81 327-408 16-96 (116)
59 2cq0_A Eukaryotic translation 99.7 9.5E-17 3.2E-21 135.4 8.1 85 146-230 11-95 (103)
60 1whw_A Hypothetical protein ri 99.7 1.2E-16 4.3E-21 133.6 8.7 85 147-231 5-89 (99)
61 2dnm_A SRP46 splicing factor; 99.7 1E-16 3.5E-21 135.2 8.1 84 146-229 9-92 (103)
62 1x5u_A Splicing factor 3B subu 99.7 1.5E-16 5.1E-21 134.7 9.1 85 146-230 11-95 (105)
63 2lxi_A RNA-binding protein 10; 99.7 1.2E-17 4.3E-22 137.3 2.2 78 329-406 2-81 (91)
64 3p5t_L Cleavage and polyadenyl 99.7 4.1E-17 1.4E-21 134.0 5.3 80 329-408 2-83 (90)
65 2dgs_A DAZ-associated protein 99.7 2.2E-16 7.6E-21 132.1 9.6 83 147-230 7-89 (99)
66 2dnz_A Probable RNA-binding pr 99.7 3.1E-16 1E-20 130.1 10.3 79 327-405 4-82 (95)
67 2dgo_A Cytotoxic granule-assoc 99.7 2.1E-16 7.1E-21 136.2 9.6 84 146-229 11-94 (115)
68 2cqc_A Arginine/serine-rich sp 99.7 1.4E-16 4.6E-21 132.3 7.9 83 147-229 12-94 (95)
69 3ns6_A Eukaryotic translation 99.7 4.6E-17 1.6E-21 136.5 5.0 80 149-228 5-91 (100)
70 1s79_A Lupus LA protein; RRM, 99.7 1.3E-16 4.4E-21 134.2 7.6 79 147-227 8-86 (103)
71 2e5h_A Zinc finger CCHC-type a 99.7 1.8E-16 6E-21 131.3 8.3 81 147-227 13-93 (94)
72 2dgo_A Cytotoxic granule-assoc 99.7 6.9E-16 2.4E-20 132.9 12.4 82 327-408 14-95 (115)
73 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.8E-16 6.1E-21 145.9 9.2 127 280-408 11-152 (165)
74 3ucg_A Polyadenylate-binding p 99.7 2.7E-16 9.1E-21 128.8 9.2 80 149-229 5-84 (89)
75 3md1_A Nuclear and cytoplasmic 99.7 3.1E-16 1.1E-20 126.6 9.4 79 329-407 2-80 (83)
76 3bs9_A Nucleolysin TIA-1 isofo 99.7 2.8E-16 9.7E-21 128.0 9.3 81 327-407 5-85 (87)
77 2cpz_A CUG triplet repeat RNA- 99.7 1.7E-16 5.9E-21 136.7 8.3 83 148-230 23-105 (115)
78 1whw_A Hypothetical protein ri 99.7 2.7E-16 9.4E-21 131.5 9.3 82 327-408 7-88 (99)
79 3q2s_C Cleavage and polyadenyl 99.7 1.1E-16 3.9E-21 154.9 8.0 80 149-228 67-148 (229)
80 2cq0_A Eukaryotic translation 99.7 3.1E-16 1.1E-20 132.2 9.6 81 327-407 14-94 (103)
81 2cpf_A RNA binding motif prote 99.7 1.9E-16 6.6E-21 132.2 8.2 83 148-230 3-88 (98)
82 3s7r_A Heterogeneous nuclear r 99.7 2.4E-16 8.4E-21 128.5 8.6 80 146-226 7-86 (87)
83 1x4e_A RNA binding motif, sing 99.6 1.4E-16 4.9E-21 129.2 7.1 81 148-228 3-83 (85)
84 2dhg_A TRNA selenocysteine ass 99.6 3.6E-16 1.2E-20 132.1 9.8 83 146-229 5-89 (104)
85 2dgs_A DAZ-associated protein 99.6 4.9E-16 1.7E-20 130.0 10.5 80 327-407 9-88 (99)
86 1x5t_A Splicing factor 3B subu 99.6 1.6E-16 5.5E-21 132.1 7.5 82 148-229 3-85 (96)
87 2fy1_A RNA-binding motif prote 99.6 4.3E-16 1.5E-20 134.3 10.3 79 328-407 7-85 (116)
88 2jrs_A RNA-binding protein 39; 99.6 2.4E-16 8.2E-21 134.0 8.6 84 147-230 23-106 (108)
89 2do4_A Squamous cell carcinoma 99.6 2.4E-16 8.2E-21 132.2 8.4 83 147-230 14-96 (100)
90 1x4h_A RNA-binding protein 28; 99.6 2.7E-16 9.3E-21 134.5 8.8 83 147-229 12-100 (111)
91 2khc_A Testis-specific RNP-typ 99.6 2.9E-16 1E-20 135.9 9.0 81 147-227 37-117 (118)
92 2div_A TRNA selenocysteine ass 99.6 3.2E-16 1.1E-20 131.1 8.9 82 148-229 7-93 (99)
93 3ns6_A Eukaryotic translation 99.6 1.6E-16 5.5E-21 133.2 7.0 80 328-407 6-92 (100)
94 1x5s_A Cold-inducible RNA-bind 99.6 3.2E-16 1.1E-20 131.9 8.8 82 327-408 11-92 (102)
95 1x5s_A Cold-inducible RNA-bind 99.6 1.5E-16 5.2E-21 133.9 6.8 83 147-229 9-91 (102)
96 2cph_A RNA binding motif prote 99.6 3.2E-16 1.1E-20 133.1 8.8 86 146-231 11-98 (107)
97 2dgp_A Bruno-like 4, RNA bindi 99.6 2.2E-16 7.7E-21 133.9 7.8 85 146-230 9-96 (106)
98 1p27_B RNA-binding protein 8A; 99.6 5.9E-16 2E-20 131.3 10.4 82 327-408 22-103 (106)
99 2ywk_A Putative RNA-binding pr 99.6 3.7E-16 1.3E-20 129.6 9.0 81 147-228 13-93 (95)
100 2cpz_A CUG triplet repeat RNA- 99.6 3.9E-16 1.3E-20 134.5 9.3 82 327-408 24-105 (115)
101 2cqb_A Peptidyl-prolyl CIS-tra 99.6 1.4E-16 4.8E-21 134.1 6.3 83 147-229 9-91 (102)
102 2dnm_A SRP46 splicing factor; 99.6 2.4E-16 8.2E-21 132.9 7.7 81 327-407 12-92 (103)
103 1p27_B RNA-binding protein 8A; 99.6 2.9E-16 9.8E-21 133.2 8.2 83 146-228 19-101 (106)
104 2kxn_B Transformer-2 protein h 99.6 3.4E-16 1.2E-20 137.5 8.9 85 146-230 42-126 (129)
105 2d9p_A Polyadenylate-binding p 99.6 9.2E-16 3.2E-20 129.3 11.2 80 327-408 14-93 (103)
106 2cqd_A RNA-binding region cont 99.6 4.3E-16 1.5E-20 134.4 9.2 83 146-229 13-95 (116)
107 1rk8_A CG8781-PA, CG8781-PA pr 99.6 3.1E-16 1.1E-20 144.2 8.7 84 145-228 67-150 (165)
108 3mdf_A Peptidyl-prolyl CIS-tra 99.6 3.4E-16 1.1E-20 127.0 7.8 79 327-405 6-84 (85)
109 2la6_A RNA-binding protein FUS 99.6 3.6E-16 1.2E-20 130.8 8.1 81 147-227 10-98 (99)
110 2wbr_A GW182, gawky, LD47780P; 99.6 4.4E-16 1.5E-20 123.9 8.1 73 149-227 6-78 (89)
111 1sjq_A Polypyrimidine tract-bi 99.6 8E-16 2.7E-20 128.5 10.1 77 147-229 13-91 (105)
112 2cpf_A RNA binding motif prote 99.6 3.5E-16 1.2E-20 130.6 8.0 81 328-408 5-88 (98)
113 2dh8_A DAZ-associated protein 99.6 5E-16 1.7E-20 131.4 9.1 83 147-230 13-95 (105)
114 2la6_A RNA-binding protein FUS 99.6 5.7E-16 1.9E-20 129.6 9.2 80 326-405 11-98 (99)
115 2cpe_A RNA-binding protein EWS 99.6 3.2E-16 1.1E-20 134.5 7.8 85 146-230 11-103 (113)
116 2fy1_A RNA-binding motif prote 99.6 5E-16 1.7E-20 133.9 9.0 81 148-229 5-85 (116)
117 3n9u_C Cleavage and polyadenyl 99.6 4.4E-16 1.5E-20 141.4 9.0 80 149-228 54-135 (156)
118 2dnh_A Bruno-like 5, RNA bindi 99.6 6E-16 2.1E-20 130.9 9.2 81 148-229 13-96 (105)
119 1x5u_A Splicing factor 3B subu 99.6 6E-16 2.1E-20 131.0 9.1 80 327-406 14-93 (105)
120 2dng_A Eukaryotic translation 99.6 5.2E-16 1.8E-20 130.9 8.7 81 147-229 12-92 (103)
121 1u6f_A Tcubp1, RNA-binding pro 99.6 8.7E-16 3E-20 137.0 10.6 80 327-406 41-120 (139)
122 1h2v_Z 20 kDa nuclear CAP bind 99.6 5.9E-16 2E-20 141.1 9.6 85 145-229 34-118 (156)
123 2cph_A RNA binding motif prote 99.6 1.1E-15 3.8E-20 129.7 10.6 81 327-407 14-96 (107)
124 2cqb_A Peptidyl-prolyl CIS-tra 99.6 3.1E-16 1E-20 132.0 6.9 81 327-407 11-91 (102)
125 2cqc_A Arginine/serine-rich sp 99.6 7.4E-16 2.5E-20 127.8 9.1 79 327-405 14-92 (95)
126 2mss_A Protein (musashi1); RNA 99.6 2.2E-16 7.7E-21 124.8 5.6 75 152-227 1-75 (75)
127 1oo0_B CG8781-PA, drosophila Y 99.6 4.8E-16 1.6E-20 132.8 8.0 83 146-228 22-104 (110)
128 1x4h_A RNA-binding protein 28; 99.6 7.9E-16 2.7E-20 131.6 9.3 81 327-407 14-100 (111)
129 2d9p_A Polyadenylate-binding p 99.6 5E-16 1.7E-20 131.0 7.8 81 147-229 12-92 (103)
130 1x5t_A Splicing factor 3B subu 99.6 3.3E-16 1.1E-20 130.2 6.6 80 328-407 5-85 (96)
131 1wi8_A EIF-4B, eukaryotic tran 99.6 5.8E-16 2E-20 130.8 8.2 80 148-229 13-93 (104)
132 3ulh_A THO complex subunit 4; 99.6 6.6E-16 2.2E-20 131.2 8.5 81 146-227 25-105 (107)
133 2jrs_A RNA-binding protein 39; 99.6 9.3E-16 3.2E-20 130.4 9.4 82 326-407 24-105 (108)
134 2krb_A Eukaryotic translation 99.6 5.8E-16 2E-20 124.4 7.7 73 150-224 1-80 (81)
135 2dng_A Eukaryotic translation 99.6 1.2E-15 4E-20 128.6 10.0 79 327-407 14-92 (103)
136 2i2y_A Fusion protein consists 99.6 5.4E-16 1.8E-20 140.3 8.4 117 189-318 10-149 (150)
137 2dhg_A TRNA selenocysteine ass 99.6 7.3E-16 2.5E-20 130.2 8.7 79 327-406 8-88 (104)
138 4a8x_A RNA-binding protein wit 99.6 4.5E-16 1.5E-20 127.1 6.9 81 149-229 3-84 (88)
139 2ek1_A RNA-binding protein 12; 99.6 2.7E-16 9.3E-21 130.5 5.7 80 149-228 14-93 (95)
140 1uaw_A Mouse-musashi-1; RNP-ty 99.6 2.3E-16 7.7E-21 125.4 5.0 76 151-227 1-76 (77)
141 2m2b_A RNA-binding protein 10; 99.6 2.9E-16 1E-20 138.6 6.1 81 149-230 22-108 (131)
142 2do4_A Squamous cell carcinoma 99.6 1.5E-15 5.2E-20 127.2 10.2 79 327-406 16-94 (100)
143 1s79_A Lupus LA protein; RRM, 99.6 6.6E-16 2.3E-20 129.8 7.9 78 328-407 11-88 (103)
144 2x1f_A MRNA 3'-END-processing 99.6 7.4E-16 2.5E-20 128.1 8.1 81 328-408 2-82 (96)
145 2e5h_A Zinc finger CCHC-type a 99.6 6.1E-16 2.1E-20 128.1 7.5 79 327-405 15-93 (94)
146 2dgv_A HnRNP M, heterogeneous 99.6 1.4E-15 4.8E-20 125.3 9.7 81 148-230 6-86 (92)
147 2dnh_A Bruno-like 5, RNA bindi 99.6 1.9E-15 6.4E-20 127.9 10.7 81 327-408 14-97 (105)
148 2hvz_A Splicing factor, argini 99.6 3.5E-16 1.2E-20 131.4 6.0 84 151-239 1-100 (101)
149 1b7f_A Protein (SXL-lethal pro 99.6 3.7E-16 1.3E-20 143.9 6.6 78 149-226 88-167 (168)
150 2do0_A HnRNP M, heterogeneous 99.6 2.9E-15 1E-19 128.7 11.8 79 327-406 14-92 (114)
151 2j76_E EIF-4B, EIF4B, eukaryot 99.6 6.3E-16 2.2E-20 129.6 7.2 82 147-230 16-98 (100)
152 1oo0_B CG8781-PA, drosophila Y 99.6 1.2E-15 4.2E-20 130.2 9.0 83 326-408 24-106 (110)
153 2cqp_A RNA-binding protein 12; 99.6 4E-16 1.4E-20 130.2 5.8 82 148-229 13-94 (98)
154 2cq3_A RNA-binding protein 9; 99.6 2E-15 6.9E-20 127.2 10.1 82 146-229 11-92 (103)
155 2rs2_A Musashi-1, RNA-binding 99.6 9.5E-16 3.3E-20 130.6 8.1 82 147-229 22-103 (109)
156 1p1t_A Cleavage stimulation fa 99.6 5.3E-16 1.8E-20 131.0 6.4 81 149-229 7-87 (104)
157 1u6f_A Tcubp1, RNA-binding pro 99.6 8.8E-16 3E-20 137.0 8.0 82 148-229 40-121 (139)
158 2dgp_A Bruno-like 4, RNA bindi 99.6 1.1E-15 3.7E-20 129.6 8.2 81 327-407 12-95 (106)
159 2do0_A HnRNP M, heterogeneous 99.6 1.5E-15 5.3E-20 130.5 9.2 81 147-228 12-92 (114)
160 3ex7_B RNA-binding protein 8A; 99.6 9.2E-16 3.2E-20 134.4 7.9 83 146-228 18-100 (126)
161 2cqi_A Nucleolysin TIAR; RNA r 99.6 1.7E-15 5.7E-20 127.7 9.1 81 147-229 12-92 (103)
162 1wg5_A Heterogeneous nuclear r 99.6 1E-15 3.5E-20 129.3 7.8 80 148-229 13-93 (104)
163 2dgx_A KIAA0430 protein; RRM d 99.6 1.1E-15 3.8E-20 127.0 7.9 80 148-230 7-90 (96)
164 1wez_A HnRNP H', FTP-3, hetero 99.6 4.4E-16 1.5E-20 130.8 5.5 78 148-228 13-90 (102)
165 2cq4_A RNA binding motif prote 99.6 7.7E-16 2.6E-20 132.4 7.0 77 150-227 25-101 (114)
166 2div_A TRNA selenocysteine ass 99.6 1.1E-15 3.6E-20 127.9 7.6 79 327-405 8-91 (99)
167 2ki2_A SS-DNA binding protein 99.6 3.3E-16 1.1E-20 128.6 4.4 79 151-230 2-80 (90)
168 3ulh_A THO complex subunit 4; 99.6 1.7E-15 5.9E-20 128.6 8.9 80 326-406 27-106 (107)
169 2cq3_A RNA-binding protein 9; 99.6 3.7E-15 1.3E-19 125.6 10.8 81 326-408 13-93 (103)
170 1p1t_A Cleavage stimulation fa 99.6 7.8E-16 2.7E-20 130.0 6.6 82 326-407 6-87 (104)
171 1x4d_A Matrin 3; structural ge 99.6 4.6E-16 1.6E-20 129.9 5.1 82 147-234 12-96 (102)
172 1wez_A HnRNP H', FTP-3, hetero 99.6 1.7E-15 5.7E-20 127.3 8.6 75 328-405 15-89 (102)
173 2cqg_A TDP-43, TAR DNA-binding 99.6 2.2E-15 7.6E-20 126.9 9.3 83 146-230 11-93 (103)
174 1x4a_A Splicing factor, argini 99.6 2.7E-15 9.4E-20 127.8 10.0 81 147-230 19-99 (109)
175 1wi8_A EIF-4B, eukaryotic tran 99.6 2E-15 6.9E-20 127.4 9.0 78 327-406 14-92 (104)
176 2ywk_A Putative RNA-binding pr 99.6 1.6E-15 5.3E-20 125.8 8.1 78 327-405 15-92 (95)
177 2dgv_A HnRNP M, heterogeneous 99.6 2.2E-15 7.6E-20 124.1 8.7 79 327-407 7-85 (92)
178 2cpe_A RNA-binding protein EWS 99.6 1.1E-15 3.9E-20 131.1 7.1 79 327-405 14-100 (113)
179 2nlw_A Eukaryotic translation 99.6 1.6E-15 5.4E-20 128.3 7.9 81 148-230 13-100 (105)
180 2dgx_A KIAA0430 protein; RRM d 99.6 1.3E-15 4.4E-20 126.6 7.2 79 327-408 8-90 (96)
181 2kt5_A RNA and export factor-b 99.6 1.8E-15 6.2E-20 132.1 8.4 82 148-230 33-114 (124)
182 3r27_A HnRNP L, heterogeneous 99.6 1.8E-15 6.1E-20 125.0 7.8 78 146-229 17-96 (100)
183 3n9u_C Cleavage and polyadenyl 99.6 1.7E-15 5.7E-20 137.5 8.4 80 328-407 55-136 (156)
184 2dh8_A DAZ-associated protein 99.6 1.3E-15 4.3E-20 128.9 7.1 79 327-406 15-93 (105)
185 2mss_A Protein (musashi1); RNA 99.6 6.4E-16 2.2E-20 122.1 4.8 74 330-404 1-74 (75)
186 2dis_A Unnamed protein product 99.6 1.9E-15 6.6E-20 128.7 8.1 83 148-230 6-92 (109)
187 4a8x_A RNA-binding protein wit 99.6 1.6E-15 5.5E-20 123.8 7.3 79 328-406 4-83 (88)
188 2cpy_A RNA-binding protein 12; 99.6 6.5E-16 2.2E-20 132.8 5.1 79 148-228 13-92 (114)
189 3s7r_A Heterogeneous nuclear r 99.6 1.9E-15 6.7E-20 123.1 7.7 78 327-405 10-87 (87)
190 3ucg_A Polyadenylate-binding p 99.6 1.7E-15 5.9E-20 123.9 7.3 78 327-405 5-82 (89)
191 2jwn_A Embryonic polyadenylate 99.6 9.1E-16 3.1E-20 134.0 6.1 80 326-406 34-113 (124)
192 2jwn_A Embryonic polyadenylate 99.6 1.8E-15 6.3E-20 132.1 8.0 79 150-229 36-114 (124)
193 2kxn_B Transformer-2 protein h 99.6 2.4E-15 8.2E-20 132.0 8.7 80 327-406 45-124 (129)
194 1x4b_A Heterogeneous nuclear r 99.6 1.9E-15 6.3E-20 130.4 7.8 80 150-230 27-106 (116)
195 2cpi_A CCR4-NOT transcription 99.6 1.3E-15 4.5E-20 130.2 6.8 87 146-232 11-103 (111)
196 2khc_A Testis-specific RNP-typ 99.6 1.7E-15 5.8E-20 131.1 7.5 79 327-405 39-117 (118)
197 2j76_E EIF-4B, EIF4B, eukaryot 99.6 1.4E-15 4.7E-20 127.5 6.6 81 325-407 16-97 (100)
198 2ek1_A RNA-binding protein 12; 99.6 7.4E-16 2.5E-20 127.8 4.9 78 328-405 15-92 (95)
199 2m2b_A RNA-binding protein 10; 99.6 1.2E-15 4.1E-20 134.6 6.5 81 326-407 21-107 (131)
200 2cpj_A Non-POU domain-containi 99.6 2E-15 6.8E-20 126.3 7.5 86 146-237 11-96 (99)
201 2dgw_A Probable RNA-binding pr 99.6 1.9E-15 6.5E-20 124.3 7.2 80 147-229 7-86 (91)
202 1iqt_A AUF1, heterogeneous nuc 99.6 7.2E-16 2.5E-20 121.8 4.5 74 152-226 1-74 (75)
203 2dnn_A RNA-binding protein 12; 99.6 1.4E-15 4.9E-20 128.9 6.6 76 150-228 16-91 (109)
204 2cqp_A RNA-binding protein 12; 99.6 8.2E-16 2.8E-20 128.4 5.0 80 327-406 14-93 (98)
205 2wbr_A GW182, gawky, LD47780P; 99.6 1.3E-15 4.5E-20 121.2 5.8 72 328-405 7-78 (89)
206 1x4b_A Heterogeneous nuclear r 99.6 2.3E-15 7.8E-20 129.8 7.9 80 325-405 24-103 (116)
207 2hgl_A HNRPF protein, heteroge 99.6 7.6E-16 2.6E-20 135.9 5.0 80 147-228 41-123 (136)
208 2dis_A Unnamed protein product 99.6 2.7E-15 9.1E-20 127.9 8.2 83 328-410 8-94 (109)
209 2dgu_A Heterogeneous nuclear r 99.6 4.1E-15 1.4E-19 125.3 9.2 74 327-408 10-83 (103)
210 1x4e_A RNA binding motif, sing 99.6 5.9E-16 2E-20 125.6 3.8 77 327-403 4-80 (85)
211 1x5o_A RNA binding motif, sing 99.6 3E-15 1E-19 128.7 8.3 75 148-223 23-97 (114)
212 2db1_A Heterogeneous nuclear r 99.6 9.7E-16 3.3E-20 132.5 5.2 79 147-227 14-95 (118)
213 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 2.9E-15 9.9E-20 133.8 8.5 78 149-226 62-139 (140)
214 2lea_A Serine/arginine-rich sp 99.6 8.9E-16 3E-20 136.0 5.0 82 148-229 45-126 (135)
215 2hgn_A Heterogeneous nuclear r 99.6 5.5E-16 1.9E-20 137.3 3.6 76 327-405 45-120 (139)
216 2cqi_A Nucleolysin TIAR; RNA r 99.6 5.2E-15 1.8E-19 124.7 9.5 79 327-407 14-92 (103)
217 2ki2_A SS-DNA binding protein 99.6 6.8E-16 2.3E-20 126.7 3.7 81 329-410 2-82 (90)
218 1x4d_A Matrin 3; structural ge 99.6 2.6E-15 8.8E-20 125.3 7.2 76 327-408 14-92 (102)
219 1uaw_A Mouse-musashi-1; RNP-ty 99.6 1.2E-15 4E-20 121.3 4.9 76 329-405 1-76 (77)
220 2kt5_A RNA and export factor-b 99.6 4.2E-15 1.4E-19 129.8 8.8 87 326-413 33-119 (124)
221 2lmi_A GRSF-1, G-rich sequence 99.6 1.2E-15 4E-20 129.6 4.9 80 147-228 8-90 (107)
222 2cq4_A RNA binding motif prote 99.6 2.4E-15 8.4E-20 129.2 6.8 81 326-407 23-103 (114)
223 1l3k_A Heterogeneous nuclear r 99.6 2.7E-15 9.3E-20 141.9 7.8 80 149-229 103-182 (196)
224 1sjq_A Polypyrimidine tract-bi 99.6 2.3E-15 7.7E-20 125.7 6.3 74 328-407 16-91 (105)
225 2cq1_A PTB-like protein L; RRM 99.6 5.2E-15 1.8E-19 123.6 8.5 77 147-229 12-90 (101)
226 1wg5_A Heterogeneous nuclear r 99.6 4.5E-15 1.5E-19 125.2 8.2 78 327-406 14-92 (104)
227 2cqg_A TDP-43, TAR DNA-binding 99.6 8.3E-15 2.8E-19 123.4 9.8 79 327-407 14-92 (103)
228 2err_A Ataxin-2-binding protei 99.6 3.5E-15 1.2E-19 127.0 7.5 83 145-229 24-106 (109)
229 1x4a_A Splicing factor, argini 99.6 7.2E-15 2.5E-19 125.2 9.4 76 327-405 21-96 (109)
230 2cpi_A CCR4-NOT transcription 99.6 4.5E-15 1.5E-19 126.9 7.9 79 328-406 15-99 (111)
231 1wel_A RNA-binding protein 12; 99.6 7.8E-16 2.7E-20 134.4 3.0 80 148-228 23-102 (124)
232 2ad9_A Polypyrimidine tract-bi 99.6 3.9E-15 1.3E-19 127.5 7.3 78 146-229 27-106 (119)
233 2hgm_A HNRPF protein, heteroge 99.6 4.3E-15 1.5E-19 129.0 7.6 79 146-227 38-118 (126)
234 1wex_A Hypothetical protein (r 99.6 1E-14 3.4E-19 122.6 9.6 76 327-408 14-91 (104)
235 2dha_A FLJ20171 protein; RRM d 99.6 2.3E-15 7.8E-20 130.4 5.7 79 147-227 20-102 (123)
236 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 7.2E-15 2.5E-19 131.2 9.0 80 326-405 61-140 (140)
237 2hgn_A Heterogeneous nuclear r 99.6 1.7E-15 5.8E-20 134.1 4.7 79 148-229 44-122 (139)
238 1x4f_A Matrin 3; structural ge 99.6 2.3E-15 7.8E-20 127.5 5.3 84 147-236 22-108 (112)
239 2rs2_A Musashi-1, RNA-binding 99.6 4.2E-15 1.4E-19 126.5 7.0 81 326-407 23-103 (109)
240 2a3j_A U1 small nuclear ribonu 99.6 7.8E-15 2.7E-19 127.9 8.7 81 147-230 26-110 (127)
241 3r27_A HnRNP L, heterogeneous 99.6 4.3E-15 1.5E-19 122.7 6.6 75 327-407 20-96 (100)
242 2jvr_A Nucleolar protein 3; RN 99.5 3.8E-15 1.3E-19 126.6 6.3 79 147-229 25-104 (111)
243 2cpy_A RNA-binding protein 12; 99.5 8.7E-16 3E-20 132.0 2.3 80 327-408 14-94 (114)
244 2krb_A Eukaryotic translation 99.5 2.4E-15 8.3E-20 120.7 4.8 72 329-402 2-80 (81)
245 1x4c_A Splicing factor, argini 99.5 1.1E-14 3.8E-19 123.8 9.2 75 148-229 13-92 (108)
246 1x4c_A Splicing factor, argini 99.5 9.2E-15 3.2E-19 124.3 8.7 73 327-406 14-91 (108)
247 2la4_A Nuclear and cytoplasmic 99.5 1.8E-14 6E-19 120.9 10.3 77 147-229 24-100 (101)
248 2cq1_A PTB-like protein L; RRM 99.5 1.7E-14 5.7E-19 120.5 10.0 75 327-407 14-90 (101)
249 2dnq_A RNA-binding protein 4B; 99.5 1.4E-14 4.8E-19 118.7 9.4 76 147-230 5-80 (90)
250 1wex_A Hypothetical protein (r 99.5 6.9E-15 2.4E-19 123.6 7.6 77 147-229 12-90 (104)
251 2dnn_A RNA-binding protein 12; 99.5 5.8E-15 2E-19 125.2 7.2 76 327-405 15-90 (109)
252 2dgw_A Probable RNA-binding pr 99.5 6.6E-15 2.3E-19 121.0 7.4 78 327-407 9-86 (91)
253 2lcw_A RNA-binding protein FUS 99.3 4.2E-16 1.4E-20 134.5 0.0 83 147-229 4-94 (116)
254 1x4g_A Nucleolysin TIAR; struc 99.5 1.7E-14 6E-19 122.8 9.9 80 146-231 21-100 (109)
255 1x5o_A RNA binding motif, sing 99.5 2.1E-14 7.2E-19 123.3 10.5 78 327-405 24-109 (114)
256 2nlw_A Eukaryotic translation 99.5 4E-15 1.4E-19 125.8 5.7 78 328-407 15-99 (105)
257 2fc8_A NCL protein; structure 99.5 2.2E-14 7.6E-19 120.5 10.1 77 327-406 14-90 (102)
258 1wg1_A KIAA1579 protein, homol 99.5 5.5E-15 1.9E-19 120.6 6.0 84 148-238 3-86 (88)
259 1why_A Hypothetical protein ri 99.5 1.5E-14 5E-19 120.4 8.7 78 147-230 14-93 (97)
260 2ytc_A PRE-mRNA-splicing facto 99.5 1.5E-14 5.2E-19 117.1 8.5 75 147-227 9-84 (85)
261 2f3j_A RNA and export factor b 99.5 8.3E-15 2.8E-19 135.9 7.8 82 148-230 86-167 (177)
262 2fc9_A NCL protein; structure 99.5 6.9E-15 2.3E-19 123.4 6.6 80 147-230 12-91 (101)
263 3beg_B Splicing factor, argini 99.5 1.4E-14 4.9E-19 124.5 8.8 68 327-401 15-82 (115)
264 1fj7_A Nucleolin RBD1, protein 99.5 1.2E-15 4.2E-20 128.1 2.0 80 148-229 15-94 (101)
265 2fc9_A NCL protein; structure 99.5 1E-14 3.5E-19 122.3 7.7 77 327-407 14-90 (101)
266 1x4f_A Matrin 3; structural ge 99.5 8.5E-15 2.9E-19 124.0 7.0 77 327-409 24-103 (112)
267 1wel_A RNA-binding protein 12; 99.5 3.3E-15 1.1E-19 130.5 4.6 80 327-407 24-103 (124)
268 2dnq_A RNA-binding protein 4B; 99.5 1.9E-14 6.6E-19 117.9 8.8 73 327-407 7-79 (90)
269 2hgl_A HNRPF protein, heteroge 99.5 4E-15 1.4E-19 131.3 5.0 78 327-406 43-123 (136)
270 1wf1_A RNA-binding protein RAL 99.5 1.9E-14 6.6E-19 122.7 8.8 92 305-406 6-98 (110)
271 2e5g_A U6 snRNA-specific termi 99.5 4.1E-14 1.4E-18 116.9 10.5 77 147-229 5-81 (94)
272 2fc8_A NCL protein; structure 99.5 1.1E-14 3.7E-19 122.4 7.0 82 146-230 11-92 (102)
273 2db1_A Heterogeneous nuclear r 99.5 5.7E-15 1.9E-19 127.6 5.3 79 327-407 16-97 (118)
274 2dnl_A Cytoplasmic polyadenyla 99.5 9.6E-15 3.3E-19 125.4 6.7 75 148-225 6-83 (114)
275 2cpx_A Hypothetical protein FL 99.5 2.8E-15 9.6E-20 129.0 3.2 82 148-229 23-104 (115)
276 2ad9_A Polypyrimidine tract-bi 99.5 1.6E-14 5.6E-19 123.7 7.8 75 327-407 30-106 (119)
277 2err_A Ataxin-2-binding protei 99.5 8.5E-15 2.9E-19 124.7 6.0 80 326-407 27-106 (109)
278 2lcw_A RNA-binding protein FUS 99.3 9.5E-16 3.3E-20 132.2 0.0 80 327-406 6-93 (116)
279 2cpx_A Hypothetical protein FL 99.5 4.5E-15 1.5E-19 127.8 4.2 81 327-407 24-104 (115)
280 1iqt_A AUF1, heterogeneous nuc 99.5 3.3E-15 1.1E-19 118.0 3.1 75 330-405 1-75 (75)
281 2e5j_A Methenyltetrahydrofolat 99.5 1.4E-14 4.7E-19 120.6 7.0 78 148-230 17-94 (97)
282 2a3j_A U1 small nuclear ribonu 99.5 1.3E-14 4.4E-19 126.6 7.1 78 327-407 28-109 (127)
283 2j8a_A Histone-lysine N-methyl 99.5 9E-15 3.1E-19 124.2 5.9 79 151-229 3-95 (136)
284 2xnq_A Nuclear polyadenylated 99.5 3.6E-14 1.2E-18 118.0 9.5 79 144-230 16-95 (97)
285 2jvo_A Nucleolar protein 3; nu 99.5 2.7E-14 9.1E-19 121.3 8.6 79 144-230 25-103 (108)
286 1nu4_A U1A RNA binding domain; 99.5 1.2E-14 4.1E-19 120.9 6.3 82 147-231 5-90 (97)
287 3pgw_A U1-A; protein-RNA compl 99.5 1.5E-14 5.2E-19 145.1 8.2 76 148-228 205-281 (282)
288 2kvi_A Nuclear polyadenylated 99.5 2.2E-14 7.6E-19 119.1 7.8 74 327-408 9-83 (96)
289 2xs2_A Deleted in azoospermia- 99.5 8.8E-15 3E-19 123.0 5.3 76 149-227 8-83 (102)
290 2kvi_A Nuclear polyadenylated 99.5 1.9E-14 6.5E-19 119.5 7.3 76 146-229 6-82 (96)
291 2dnp_A RNA-binding protein 14; 99.5 2.5E-14 8.5E-19 117.2 7.8 77 146-230 5-81 (90)
292 1x4g_A Nucleolysin TIAR; struc 99.5 2.4E-14 8.1E-19 121.9 7.9 76 327-408 24-99 (109)
293 3egn_A RNA-binding protein 40; 99.5 3.5E-15 1.2E-19 133.8 2.7 84 146-229 41-129 (143)
294 1whx_A Hypothetical protein ri 99.5 1.3E-14 4.5E-19 123.9 5.8 75 149-229 9-83 (111)
295 2cpd_A Apobec-1 stimulating pr 99.5 4.5E-14 1.5E-18 117.9 9.0 74 325-406 12-87 (99)
296 2hvz_A Splicing factor, argini 99.5 2.3E-14 8E-19 120.2 7.3 74 329-407 1-74 (101)
297 2dgt_A RNA-binding protein 30; 99.5 2.7E-14 9.1E-19 117.6 7.4 77 146-230 6-82 (92)
298 2j8a_A Histone-lysine N-methyl 99.5 8.4E-15 2.9E-19 124.4 4.3 77 329-405 3-93 (136)
299 2jvr_A Nucleolar protein 3; RN 99.5 8.1E-15 2.8E-19 124.5 4.3 75 328-406 28-103 (111)
300 2lmi_A GRSF-1, G-rich sequence 99.5 7.1E-15 2.4E-19 124.7 3.7 79 327-407 10-91 (107)
301 1whx_A Hypothetical protein ri 99.5 4E-14 1.4E-18 120.8 8.4 76 327-408 9-84 (111)
302 2xs2_A Deleted in azoospermia- 99.5 1.7E-14 5.8E-19 121.2 5.9 80 327-409 8-87 (102)
303 1why_A Hypothetical protein ri 99.5 4.6E-14 1.6E-18 117.4 8.2 74 328-407 17-92 (97)
304 2dgu_A Heterogeneous nuclear r 99.5 3.5E-14 1.2E-18 119.5 7.5 74 148-229 9-82 (103)
305 2cpj_A Non-POU domain-containi 99.5 4E-14 1.4E-18 118.3 7.8 75 327-407 14-88 (99)
306 2diu_A KIAA0430 protein; struc 99.5 8.2E-14 2.8E-18 111.8 8.8 79 148-236 6-90 (96)
307 1fjc_A Nucleolin RBD2, protein 99.5 1.1E-14 3.6E-19 121.0 3.9 78 147-229 13-90 (96)
308 2dha_A FLJ20171 protein; RRM d 99.5 1.2E-14 4.1E-19 125.9 4.4 77 328-406 23-103 (123)
309 2cpd_A Apobec-1 stimulating pr 99.5 7E-14 2.4E-18 116.8 8.9 75 148-230 13-89 (99)
310 2ytc_A PRE-mRNA-splicing facto 99.5 4.3E-14 1.5E-18 114.4 7.3 73 327-405 11-84 (85)
311 2cq2_A Hypothetical protein LO 99.5 3E-14 1E-18 120.7 6.3 77 328-410 25-108 (114)
312 2dgt_A RNA-binding protein 30; 99.5 5.4E-14 1.8E-18 115.7 7.7 72 327-406 9-80 (92)
313 3pgw_S U1-70K; protein-RNA com 99.5 5E-14 1.7E-18 149.2 9.4 81 149-229 101-181 (437)
314 3lqv_A PRE-mRNA branch site pr 99.5 4.6E-14 1.6E-18 121.4 7.5 106 226-354 4-109 (115)
315 2e5g_A U6 snRNA-specific termi 99.5 5.4E-14 1.9E-18 116.2 7.4 72 328-405 8-79 (94)
316 3beg_B Splicing factor, argini 99.5 3.4E-14 1.2E-18 122.1 6.1 69 149-224 15-83 (115)
317 1fj7_A Nucleolin RBD1, protein 99.5 5.4E-15 1.9E-19 124.1 1.1 78 327-406 16-93 (101)
318 2hgm_A HNRPF protein, heteroge 99.5 2.9E-14 1E-18 123.7 5.6 77 327-406 41-119 (126)
319 2f3j_A RNA and export factor b 99.5 4.2E-14 1.4E-18 131.1 6.8 83 326-409 86-168 (177)
320 2xnq_A Nuclear polyadenylated 99.5 9.7E-14 3.3E-18 115.4 8.2 72 327-406 21-93 (97)
321 1wf1_A RNA-binding protein RAL 99.5 7.7E-14 2.6E-18 119.0 7.7 73 149-229 26-99 (110)
322 2e5j_A Methenyltetrahydrofolat 99.5 6.9E-14 2.4E-18 116.3 7.3 76 327-407 18-93 (97)
323 2e44_A Insulin-like growth fac 99.5 5E-14 1.7E-18 116.9 6.4 78 149-230 14-92 (96)
324 2dnp_A RNA-binding protein 14; 99.5 8.5E-14 2.9E-18 114.0 7.6 73 327-407 8-80 (90)
325 1nu4_A U1A RNA binding domain; 99.5 4.2E-14 1.4E-18 117.6 5.3 78 327-407 7-88 (97)
326 2hzc_A Splicing factor U2AF 65 99.5 9.5E-14 3.3E-18 112.9 7.2 71 149-226 5-86 (87)
327 1fjc_A Nucleolin RBD2, protein 99.4 5.4E-14 1.8E-18 116.7 5.6 75 327-406 15-89 (96)
328 2cqh_A IGF-II mRNA-binding pro 99.4 4.6E-14 1.6E-18 116.4 5.0 75 148-229 6-82 (93)
329 2jvo_A Nucleolar protein 3; nu 99.4 8.3E-14 2.8E-18 118.2 6.5 73 326-406 29-101 (108)
330 1x5p_A Negative elongation fac 99.4 2.1E-13 7.3E-18 113.3 8.8 76 147-230 12-87 (97)
331 2cqh_A IGF-II mRNA-binding pro 99.4 6E-14 2.1E-18 115.7 5.4 73 327-406 7-81 (93)
332 2pe8_A Splicing factor 45; RRM 99.4 2.8E-13 9.6E-18 114.0 9.4 80 327-406 7-92 (105)
333 2pe8_A Splicing factor 45; RRM 99.4 2.9E-13 1E-17 113.8 9.4 81 148-228 6-92 (105)
334 2la4_A Nuclear and cytoplasmic 99.4 5.4E-14 1.8E-18 117.9 4.8 72 328-405 27-98 (101)
335 2cq2_A Hypothetical protein LO 99.4 1E-13 3.5E-18 117.4 6.3 73 147-225 22-101 (114)
336 1wg1_A KIAA1579 protein, homol 99.4 1.5E-13 5E-18 112.1 6.8 73 328-407 5-77 (88)
337 3zzy_A Polypyrimidine tract-bi 99.4 3E-13 1E-17 117.2 9.1 76 150-230 28-106 (130)
338 2e44_A Insulin-like growth fac 99.4 1.6E-13 5.4E-18 113.9 6.8 77 328-408 15-92 (96)
339 3d2w_A TAR DNA-binding protein 99.4 2.2E-13 7.6E-18 111.2 7.4 74 147-229 8-83 (89)
340 1sjr_A Polypyrimidine tract-bi 99.4 2.8E-13 9.5E-18 122.0 8.6 78 149-230 45-124 (164)
341 2voo_A Lupus LA protein; RNA-b 99.4 8.2E-13 2.8E-17 124.3 11.7 123 284-408 63-187 (193)
342 1sjr_A Polypyrimidine tract-bi 99.4 5.8E-13 2E-17 119.9 9.7 76 328-407 46-123 (164)
343 3egn_A RNA-binding protein 40; 99.4 4E-14 1.4E-18 126.9 1.8 81 327-407 44-129 (143)
344 3zzy_A Polypyrimidine tract-bi 99.4 6.5E-13 2.2E-17 115.1 9.3 74 328-406 28-104 (130)
345 2voo_A Lupus LA protein; RNA-b 99.4 4E-13 1.4E-17 126.4 8.6 79 149-229 108-186 (193)
346 2e5i_A Heterogeneous nuclear r 99.4 1.2E-12 4.1E-17 113.0 10.2 73 328-406 25-100 (124)
347 2dnl_A Cytoplasmic polyadenyla 99.4 2.6E-13 9E-18 116.4 6.0 73 328-403 8-83 (114)
348 1x5p_A Negative elongation fac 99.4 6.7E-13 2.3E-17 110.3 8.3 72 327-406 14-85 (97)
349 2diu_A KIAA0430 protein; struc 99.4 6.1E-13 2.1E-17 106.8 7.2 72 329-410 10-86 (96)
350 2e5i_A Heterogeneous nuclear r 99.4 1.1E-12 3.9E-17 113.1 9.4 74 152-231 27-103 (124)
351 1wf0_A TDP-43, TAR DNA-binding 99.4 1.8E-13 6.1E-18 111.6 4.1 75 148-229 3-77 (88)
352 2hzc_A Splicing factor U2AF 65 99.4 4.7E-13 1.6E-17 108.7 6.2 70 327-403 5-85 (87)
353 3d2w_A TAR DNA-binding protein 99.4 6.5E-13 2.2E-17 108.4 7.0 70 327-405 10-81 (89)
354 2bz2_A Negative elongation fac 99.4 9.7E-13 3.3E-17 113.9 7.4 77 146-230 35-111 (121)
355 3v4m_A Splicing factor U2AF 65 99.3 1.9E-12 6.3E-17 109.0 7.6 78 328-405 5-94 (105)
356 3ue2_A Poly(U)-binding-splicin 99.3 2.8E-12 9.7E-17 110.0 8.1 79 327-405 19-106 (118)
357 3u1l_A PRE-mRNA-splicing facto 99.3 1.9E-12 6.4E-17 124.6 7.6 81 327-413 133-234 (240)
358 2bz2_A Negative elongation fac 99.3 1.9E-12 6.5E-17 112.1 6.8 74 327-408 38-111 (121)
359 3u1l_A PRE-mRNA-splicing facto 99.3 2E-12 6.7E-17 124.5 7.3 78 147-230 131-229 (240)
360 1jmt_A Splicing factor U2AF 35 99.3 1.6E-12 5.5E-17 109.2 5.1 72 333-405 20-103 (104)
361 2dit_A HIV TAT specific factor 99.3 6.1E-12 2.1E-16 107.4 8.5 84 146-233 11-105 (112)
362 3v4m_A Splicing factor U2AF 65 99.3 5E-12 1.7E-16 106.3 7.3 79 149-227 4-94 (105)
363 1wf0_A TDP-43, TAR DNA-binding 99.3 3.2E-12 1.1E-16 104.1 6.0 67 328-403 5-73 (88)
364 1jmt_A Splicing factor U2AF 35 99.2 2.5E-12 8.5E-17 108.0 3.1 72 155-227 20-103 (104)
365 2dit_A HIV TAT specific factor 99.2 1.6E-11 5.6E-16 104.7 7.8 77 327-407 14-101 (112)
366 3ue2_A Poly(U)-binding-splicin 99.2 1.3E-11 4.6E-16 105.7 7.2 79 149-227 19-106 (118)
367 2d9o_A DNAJ (HSP40) homolog, s 99.1 3E-10 1E-14 94.2 9.5 74 149-229 9-89 (100)
368 2d9o_A DNAJ (HSP40) homolog, s 99.1 1.9E-10 6.4E-15 95.4 7.9 62 337-405 26-87 (100)
369 3tht_A Alkylated DNA repair pr 99.0 2.5E-10 8.5E-15 115.8 7.8 66 147-218 15-82 (345)
370 3s6e_A RNA-binding protein 39; 99.0 3.4E-10 1.2E-14 96.2 5.9 60 342-405 31-90 (114)
371 3tht_A Alkylated DNA repair pr 99.0 4.9E-10 1.7E-14 113.7 6.9 72 327-404 17-95 (345)
372 3s6e_A RNA-binding protein 39; 98.9 1.4E-09 4.8E-14 92.4 7.3 75 149-227 6-90 (114)
373 1owx_A Lupus LA protein, SS-B, 98.8 4.4E-09 1.5E-13 89.4 6.3 72 327-404 17-92 (121)
374 1owx_A Lupus LA protein, SS-B, 98.8 5.1E-09 1.7E-13 89.1 6.0 71 147-223 15-89 (121)
375 2dnr_A Synaptojanin-1; RRM dom 98.7 2.2E-08 7.6E-13 79.6 6.0 72 149-229 6-85 (91)
376 2dnr_A Synaptojanin-1; RRM dom 98.6 2.5E-08 8.4E-13 79.3 4.9 55 343-406 30-84 (91)
377 3dxb_A Thioredoxin N-terminall 98.6 6.7E-08 2.3E-12 92.9 8.5 66 340-405 141-210 (222)
378 1ufw_A Synaptojanin 2; RNP dom 98.5 1.1E-07 3.9E-12 75.8 4.7 71 148-227 13-92 (95)
379 1ufw_A Synaptojanin 2; RNP dom 98.4 7E-08 2.4E-12 77.1 2.4 68 329-405 16-92 (95)
380 3dxb_A Thioredoxin N-terminall 98.4 2.6E-07 8.8E-12 88.7 6.6 81 148-228 122-211 (222)
381 2l9w_A U4/U6 snRNA-associated- 98.2 2E-06 6.7E-11 70.0 5.1 70 328-403 21-95 (117)
382 2l9w_A U4/U6 snRNA-associated- 98.1 7.8E-06 2.7E-10 66.5 7.8 77 143-225 14-95 (117)
383 2dhx_A Poly (ADP-ribose) polym 97.9 8.3E-05 2.8E-09 60.1 9.9 86 149-243 7-99 (104)
384 1uw4_A UPF3X; nonsense mediate 97.0 0.0031 1E-07 50.3 8.5 70 151-220 2-73 (91)
385 2dhx_A Poly (ADP-ribose) polym 96.8 0.0093 3.2E-07 48.2 9.4 90 229-341 7-99 (104)
386 1wey_A Calcipressin 1; structu 96.7 0.0022 7.5E-08 52.1 5.6 72 150-227 5-81 (104)
387 1wey_A Calcipressin 1; structu 96.7 0.0013 4.3E-08 53.5 3.8 73 328-406 5-82 (104)
388 1uw4_A UPF3X; nonsense mediate 96.6 0.005 1.7E-07 49.1 6.8 71 329-399 2-74 (91)
389 1whv_A Poly(A)-specific ribonu 96.6 0.0035 1.2E-07 49.9 5.6 57 147-212 13-69 (100)
390 3ctr_A Poly(A)-specific ribonu 96.0 0.014 4.9E-07 46.6 6.2 54 151-213 7-60 (101)
391 3ctr_A Poly(A)-specific ribonu 95.8 0.0084 2.9E-07 48.0 4.4 63 327-398 5-68 (101)
392 1whv_A Poly(A)-specific ribonu 95.7 0.0094 3.2E-07 47.5 4.2 55 328-391 16-70 (100)
393 2l08_A Regulator of nonsense t 95.7 0.014 4.8E-07 46.8 5.1 72 149-220 8-81 (97)
394 1wwh_A Nucleoporin 35, nucleop 95.4 0.041 1.4E-06 45.9 7.3 63 149-219 23-85 (119)
395 1wwh_A Nucleoporin 35, nucleop 95.3 0.041 1.4E-06 45.9 6.8 64 327-398 23-86 (119)
396 2l08_A Regulator of nonsense t 95.2 0.017 5.8E-07 46.3 4.2 72 328-399 9-82 (97)
397 3pq1_A Poly(A) RNA polymerase; 95.1 0.0055 1.9E-07 64.1 1.2 62 144-211 47-108 (464)
398 3p3d_A Nucleoporin 53; structu 92.2 0.058 2E-06 45.6 2.1 76 149-226 6-95 (132)
399 3p3d_A Nucleoporin 53; structu 91.8 0.086 2.9E-06 44.6 2.6 74 329-404 8-95 (132)
400 3pq1_A Poly(A) RNA polymerase; 88.5 0.15 5.2E-06 53.3 1.9 55 328-388 53-107 (464)
401 3d45_A Poly(A)-specific ribonu 70.7 5.1 0.00018 42.5 6.0 55 150-213 440-494 (507)
402 3d45_A Poly(A)-specific ribonu 64.4 7.8 0.00027 41.1 5.8 55 328-391 440-494 (507)
403 3arc_X Photosystem II PSBX pro 46.0 8 0.00027 24.9 1.2 16 578-593 2-17 (39)
404 2pk2_A Cyclin-T1, protein TAT; 42.6 5.2 0.00018 40.4 0.0 10 340-349 229-238 (358)
405 4eyt_A Telomerase associated p 32.0 1.7E+02 0.0059 22.4 7.7 58 147-212 9-66 (129)
406 3bz1_X Photosystem II PSBX pro 27.5 23 0.00079 24.1 1.2 18 576-593 10-27 (50)
407 4eyt_A Telomerase associated p 22.0 1.8E+02 0.0061 22.3 5.4 55 329-391 13-67 (129)
No 1
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=3.4e-42 Score=349.73 Aligned_cols=251 Identities=20% Similarity=0.308 Sum_probs=214.0
Q ss_pred hhccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccc
Q 007417 144 DRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCG 223 (604)
Q Consensus 144 ~~~~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~ 223 (604)
.......++|||+|||+++|+++|+++|++||+|..|+|++++.+ ++|||||+|.+.++|.+|++ +++..|.|+.|.
T Consensus 35 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~ 111 (292)
T 2ghp_A 35 LTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAIT-KTHKVVGQNEII 111 (292)
T ss_dssp -------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHT-TTTCEETTEECE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEE
Confidence 344557899999999999999999999999999999999998643 58999999999999999995 899999999999
Q ss_pred cCCCCCCCcceecccCCCCcHHHHHHHHHhcC-CcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCeec
Q 007417 224 TAPSEDNDTLFVGNICNTWTKEAIKQKLKDYG-VEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVF 302 (604)
Q Consensus 224 v~~~~~~~~l~v~nlp~~~te~~l~~~f~~~G-~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~ 302 (604)
|.++ ..++|||+|||+.+++++|+++|..|| . |..|.++.+. .+.++|||||+|.+.++|.+|+..|++..+
T Consensus 112 v~~~-~~~~l~v~nlp~~~t~~~l~~~f~~~G~~--i~~v~i~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~-- 184 (292)
T 2ghp_A 112 VSHL-TECTLWMTNFPPSYTQRNIRDLLQDINVV--ALSIRLPSLR--FNTSRRFAYIDVTSKEDARYCVEKLNGLKI-- 184 (292)
T ss_dssp EEEC-CSCEEEEECCCTTCCHHHHHHHHHHTTCC--CCEEECC---------CCEEEEECSSHHHHHHHHHHHTTCEE--
T ss_pred EEEC-CCCEEEEECCCCCCCHHHHHHHHHHhCCC--eEEEEEEeCC--CCCcceEEEEEECCHHHHHHHHHHhCCCEe--
Confidence 9876 478999999999999999999999999 8 9999999875 478899999999999999999999999888
Q ss_pred CCCCcceeecccCCCCCCChh--hhccccccccCCCCcc-cChhhHHhhhcccCCEEEEEEeecCC-CCCcceEEEEEeC
Q 007417 303 GHPERTVKVAFAEPLREPDPE--IMAHVKTVFLDGVPPH-WKENQIRDQIKGYGDVIRIVLARNMS-TAKRKDYGFIDFS 378 (604)
Q Consensus 303 g~~~r~l~v~~a~~~~~~~~~--~~~~~~~l~v~nLp~~-~t~~~l~~~F~~~G~v~~v~i~~d~~-~g~~~G~afV~F~ 378 (604)
.++.|.|.++.+....... .....++|||+|||+. +++++|+++|++||.|..|.|+++.. |+.++|||||+|.
T Consensus 185 --~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~ 262 (292)
T 2ghp_A 185 --EGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFE 262 (292)
T ss_dssp --TTEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEES
T ss_pred --CCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeC
Confidence 5799999999876554322 3345689999999999 99999999999999999999999876 6999999999999
Q ss_pred CHHHHHHHHHHhcCCeeCCCccEEEEeee
Q 007417 379 THEAAVACINAINNKEFSDGNSKVKLRAR 407 (604)
Q Consensus 379 ~~~~A~~A~~~lng~~~~g~~~~v~~~~~ 407 (604)
++++|.+|+ .|||..|.|+.|.|.++..
T Consensus 263 ~~~~A~~A~-~l~g~~~~g~~i~V~~a~~ 290 (292)
T 2ghp_A 263 NKDSAERAL-QMNRSLLGNREISVSLADK 290 (292)
T ss_dssp SHHHHHHHG-GGTTEEETTEEEEEEECCC
T ss_pred CHHHHHHHH-HhcCCEECCcEEEEEEecC
Confidence 999999999 9999999999999988643
No 2
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=2.4e-41 Score=342.15 Aligned_cols=244 Identities=19% Similarity=0.305 Sum_probs=224.4
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCC
Q 007417 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (604)
Q Consensus 147 ~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (604)
...+++|||+|||+++|+++|+++|++|| |..|++ ++++|||||+|.+.++|.+|+..|++..|.|+.|.|..
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~ 91 (284)
T 3smz_A 19 FRNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQL 91 (284)
T ss_dssp HHCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEe
Confidence 34679999999999999999999999999 999988 56789999999999999999999999999999999999
Q ss_pred CCCCCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCeecCCCC
Q 007417 227 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 306 (604)
Q Consensus 227 ~~~~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~g~~~ 306 (604)
+...++|||+|||+.+|+++|+++|+.||. |..+.++.+. .++.++|||||+|.+.++|.+|+..|++..+ .+
T Consensus 92 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~--i~~~~i~~~~-~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~----~g 164 (284)
T 3smz_A 92 QPTDALLCVANLPPSLTQQQFEELVRPFGS--LERCFLVYSE-RTGQSKGYGFAEYMKKDSAARAKSDLLGKPL----GP 164 (284)
T ss_dssp CCCSCEEEEESCCTTCCHHHHHHHHGGGSC--EEEEEEEECT-TTCCEEEEEEEEESSHHHHHHHHHHHTTCEE----TT
T ss_pred cCCCCEEEEcCCCCcCCHHHHHHHHHhcCC--eeEEEEEeeC-CCCccceEEEEEECCHHHHHHHHHHhCCCEe----CC
Confidence 999999999999999999999999999999 9999999874 5789999999999999999999999999877 57
Q ss_pred cceeecccCCCCCCChhhhccccccccCCCCccc-ChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHH
Q 007417 307 RTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHW-KENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVA 385 (604)
Q Consensus 307 r~l~v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~-t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~ 385 (604)
+.|.|.++.+...... ....++|||+|||+.+ ++++|+++|++||.|..|.|+++. +|.++|||||+|.++++|.+
T Consensus 165 ~~i~v~~a~~~~~~~~--~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~ 241 (284)
T 3smz_A 165 RTLYVHWTDAGQLTPA--LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEE 241 (284)
T ss_dssp EECEEEECCGGGCCTT--TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHH
T ss_pred cEEEEEECCCCCCCcc--cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHH
Confidence 9999999987543322 2346789999999995 999999999999999999999986 78999999999999999999
Q ss_pred HHHHhcCCeeCCCccEEEEeee
Q 007417 386 CINAINNKEFSDGNSKVKLRAR 407 (604)
Q Consensus 386 A~~~lng~~~~g~~~~v~~~~~ 407 (604)
|+..|||..|.|+.|.|.++..
T Consensus 242 A~~~l~g~~~~g~~l~v~~a~~ 263 (284)
T 3smz_A 242 AQQQADGLSLGGSHLRVSFCAP 263 (284)
T ss_dssp HHHHHTTCEETTEECEEEECCS
T ss_pred HHHHhCCCccCCeEEEEEEecC
Confidence 9999999999999999988744
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.97 E-value=1.2e-30 Score=251.81 Aligned_cols=180 Identities=26% Similarity=0.427 Sum_probs=152.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCCC
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~ 228 (604)
+.+||||+|||+++|+++|+++|++||+|.+|+|++++.|++++|||||+|.+.++|.+||..+++..+.|+.|++..+.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999887664
Q ss_pred C--------CCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCe
Q 007417 229 D--------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV 300 (604)
Q Consensus 229 ~--------~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~ 300 (604)
. ..+|||+|||+.+|+++|+++|+.||. |..|+|+++ .+.++|||||+|.+.++|.+|++.||+..+
T Consensus 94 ~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~--i~~~~i~~d---~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~ 168 (213)
T 4f02_A 94 RDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN--ILSCKVVCD---ENGSKGYGFVHFETQEAAERAIEKMNGMLL 168 (213)
T ss_dssp CCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSC--EEEEEEEEE---TTEEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred ccccccccccccceECCcccccHHHHHHHHHhhcCC--eEEEEeecc---CCCCceEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 3 468999999999999999999999999 999999987 356899999999999999999999999988
Q ss_pred ecCCCCcceeecccCCCCCCChhhhccccccccCCCC
Q 007417 301 VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 337 (604)
Q Consensus 301 ~~g~~~r~l~v~~a~~~~~~~~~~~~~~~~l~v~nLp 337 (604)
.++.|.|.++.++.............++..++|
T Consensus 169 ----~g~~i~V~~a~~~~~~~~~~~~~~~~~~p~~~P 201 (213)
T 4f02_A 169 ----NDRKVFVGRFKSRKEREAELGARAKEFYPYDVP 201 (213)
T ss_dssp ----TTEECEEEECCCHHHHHHHHC------------
T ss_pred ----CCEEEEEEEcCCCcccchhhhcccCCCCCCCCC
Confidence 689999999987544333333333444444444
No 4
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.96 E-value=2.5e-29 Score=232.98 Aligned_cols=165 Identities=21% Similarity=0.402 Sum_probs=147.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCCC
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~ 228 (604)
.+++|||+|||+++|+++|+++|++||.|.+|++++++.+++++|||||+|.+.++|.+|++.|++..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999988877654432
Q ss_pred CCCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCeecCCCCcc
Q 007417 229 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 308 (604)
Q Consensus 229 ~~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~g~~~r~ 308 (604)
+..
T Consensus 82 ~~~----------------------------------------------------------------------------- 84 (168)
T 1b7f_A 82 PGG----------------------------------------------------------------------------- 84 (168)
T ss_dssp CCS-----------------------------------------------------------------------------
T ss_pred CCc-----------------------------------------------------------------------------
Confidence 100
Q ss_pred eeecccCCCCCCChhhhccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 007417 309 VKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN 388 (604)
Q Consensus 309 l~v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~ 388 (604)
. ....++|+|+|||..+++++|+++|++||.|..+.++++..++.++|||||+|.+.++|.+|+.
T Consensus 85 ----------~-----~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 149 (168)
T 1b7f_A 85 ----------E-----SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAIS 149 (168)
T ss_dssp ----------S-----TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred ----------c-----cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHH
Confidence 0 0123689999999999999999999999999999999998899999999999999999999999
Q ss_pred HhcCCeeCC--CccEEEEe
Q 007417 389 AINNKEFSD--GNSKVKLR 405 (604)
Q Consensus 389 ~lng~~~~g--~~~~v~~~ 405 (604)
.|||..|.| +.|.|.++
T Consensus 150 ~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 150 ALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHTTCCCTTCSSCCEEEEC
T ss_pred HhcCCEecCCCeEEEEEeC
Confidence 999999988 88877763
No 5
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.96 E-value=1.5e-29 Score=240.76 Aligned_cols=175 Identities=22% Similarity=0.448 Sum_probs=147.9
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccC
Q 007417 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (604)
Q Consensus 146 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (604)
.....++|||+|||+++|+++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|.+||.. ++..|.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 344678999999999999999999999999999999999999999999999999999999999986 8888888877654
Q ss_pred CCCCCCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCeecCCC
Q 007417 226 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 305 (604)
Q Consensus 226 ~~~~~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~g~~ 305 (604)
.+..... ..
T Consensus 88 ~~~~~~~--------------------------------------~~--------------------------------- 96 (196)
T 1l3k_A 88 RAVSRED--------------------------------------SQ--------------------------------- 96 (196)
T ss_dssp ECCC----------------------------------------------------------------------------
T ss_pred cccCccc--------------------------------------cc---------------------------------
Confidence 4321000 00
Q ss_pred CcceeecccCCCCCCChhhhccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHH
Q 007417 306 ERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVA 385 (604)
Q Consensus 306 ~r~l~v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~ 385 (604)
+ +......++|||+|||+.+|+++|+++|++||.|..|.|+.+..++.++|||||+|.++++|.+
T Consensus 97 -~--------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~ 161 (196)
T 1l3k_A 97 -R--------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 161 (196)
T ss_dssp ---------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred -c--------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHH
Confidence 0 0001123689999999999999999999999999999999999899999999999999999999
Q ss_pred HHHHhcCCeeCCCccEEEEeeec
Q 007417 386 CINAINNKEFSDGNSKVKLRARL 408 (604)
Q Consensus 386 A~~~lng~~~~g~~~~v~~~~~~ 408 (604)
|+.. ++..|.|+.|.|.++...
T Consensus 162 A~~~-~~~~~~G~~i~v~~a~~k 183 (196)
T 1l3k_A 162 IVIQ-KYHTVNGHNCEVRKALSK 183 (196)
T ss_dssp HHHC-SCCEETTEECEEEECC--
T ss_pred HHHh-CCcEECCEEEEEEecCCh
Confidence 9985 899999999999886443
No 6
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.96 E-value=2.7e-28 Score=235.36 Aligned_cols=169 Identities=21% Similarity=0.326 Sum_probs=149.5
Q ss_pred CCCCCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCeecCCCC
Q 007417 227 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 306 (604)
Q Consensus 227 ~~~~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~g~~~ 306 (604)
+.+.++|||+|||+.+|+++|+++|++||. |.+|+|+++. .+++++|||||+|.+.++|.+|+..+++..+ .+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~--I~~v~i~~d~-~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~----~g 84 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGP--ILSIRVCRDM-ITRRSLGYAYVNFQQPADAERALDTMNFDVI----KG 84 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSC--EEEEEEEECT-TTCCEEEEEEEEESSHHHHHHHHHHHTTCEE----TT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCC--EEEEEEeccc-CCCCccccccceeCCHHHHHHHHHHhhhhhc----CC
Confidence 445789999999999999999999999999 9999999984 5889999999999999999999999999887 57
Q ss_pred cceeecccCCCCCCChhhhccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHH
Q 007417 307 RTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386 (604)
Q Consensus 307 r~l~v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A 386 (604)
+.+++.++..... ......++|||+|||+.+|+++|+++|++||.|..|+|+++. +.++|||||+|.+.++|.+|
T Consensus 85 ~~i~~~~~~~~~~---~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~A 159 (213)
T 4f02_A 85 KPVRIMWSQRDPS---LRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERA 159 (213)
T ss_dssp EECEEEECCCCTH---HHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHH
T ss_pred ccccccccccccc---ccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHH
Confidence 8899888765432 223345789999999999999999999999999999999985 45899999999999999999
Q ss_pred HHHhcCCeeCCCccEEEEeee
Q 007417 387 INAINNKEFSDGNSKVKLRAR 407 (604)
Q Consensus 387 ~~~lng~~~~g~~~~v~~~~~ 407 (604)
|+.|||..|.|+.|.|.++..
T Consensus 160 i~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 160 IEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp HHHHTTCEETTEECEEEECCC
T ss_pred HHHhCCCEECCEEEEEEEcCC
Confidence 999999999999999988643
No 7
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.96 E-value=2.6e-28 Score=235.94 Aligned_cols=165 Identities=18% Similarity=0.387 Sum_probs=150.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCCC
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~ 228 (604)
..++|||+|||+++|+++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|.+|++.|++..|.|+.|.|..+.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 57899999999999999999999999999999999999899999999999999999999999999999999999996654
Q ss_pred C-----------------CCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHH
Q 007417 229 D-----------------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAA 291 (604)
Q Consensus 229 ~-----------------~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~A 291 (604)
. .++|||+|||..+|+++|+++|+.||. |..|.++.+. .+++++|||||+|.+.++|.+|
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~--v~~v~i~~~~-~~g~~~g~afV~F~~~~~A~~A 183 (216)
T 2qfj_A 107 NIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGK--IKSATLARDP-TTGKHKGYGFIEYEKAQSSQDA 183 (216)
T ss_dssp CCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSC--EEEEEEEECT-TTCCEEEEEEEEESSHHHHHHH
T ss_pred CccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCC--eeEEEEEecC-CCCCcCceEEEEecCHHHHHHH
Confidence 3 479999999999999999999999999 9999999884 4789999999999999999999
Q ss_pred HHHhCCCCeecCCCCcceeecccCCCCCC
Q 007417 292 YKRLQKPDVVFGHPERTVKVAFAEPLREP 320 (604)
Q Consensus 292 l~~l~~~~~~~g~~~r~l~v~~a~~~~~~ 320 (604)
+..|++..+ .++.|.|.++.+....
T Consensus 184 ~~~l~g~~~----~g~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 184 VSSMNLFDL----GGQYLRVGKAVTPPMP 208 (216)
T ss_dssp HHHHTTCBC----SSSBCEEEECSSCSST
T ss_pred HHHccCCEe----CCcEEEEEEecCCCCC
Confidence 999999987 6899999999876543
No 8
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.96 E-value=6.3e-28 Score=233.17 Aligned_cols=175 Identities=20% Similarity=0.388 Sum_probs=154.0
Q ss_pred CCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCeecCCCCcce
Q 007417 230 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTV 309 (604)
Q Consensus 230 ~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~g~~~r~l 309 (604)
.++|||+|||+.+|+++|+++|+.||. |..|.++++. .+++++|||||+|.+.++|.+|++.|++..+ .++.|
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~--i~~v~i~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~----~g~~l 100 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGP--IKSIDMSWDS-VTMKHKGFAFVEYEVPEAAQLALEQMNSVML----GGRNI 100 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSC--EEEEEECCC--CC-CCCSEEEEEESSHHHHHHHHHHHSSCCC----C-CCC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCC--EEEEEEeecC-CCCccCceEEEEeCCHHHHHHHHHHccCCee----CCeeE
Confidence 468999999999999999999999999 9999999884 4788999999999999999999999999887 57899
Q ss_pred eecccCCCCCCChh------hhccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHH
Q 007417 310 KVAFAEPLREPDPE------IMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 383 (604)
Q Consensus 310 ~v~~a~~~~~~~~~------~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A 383 (604)
.|.++.......+. .....++|||+|||..+++++|+++|++||.|..|.|++++.+++++|||||+|.+.++|
T Consensus 101 ~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A 180 (216)
T 2qfj_A 101 KVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSS 180 (216)
T ss_dssp EEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred EEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHH
Confidence 99887765433221 223457999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCeeCCCccEEEEeeecCCC
Q 007417 384 VACINAINNKEFSDGNSKVKLRARLSNP 411 (604)
Q Consensus 384 ~~A~~~lng~~~~g~~~~v~~~~~~~~~ 411 (604)
.+|+..||+..|.|+.|.|.++.....+
T Consensus 181 ~~A~~~l~g~~~~g~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 181 QDAVSSMNLFDLGGQYLRVGKAVTPPMP 208 (216)
T ss_dssp HHHHHHHTTCBCSSSBCEEEECSSCSST
T ss_pred HHHHHHccCCEeCCcEEEEEEecCCCCC
Confidence 9999999999999999999987655433
No 9
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.8e-28 Score=223.07 Aligned_cols=165 Identities=19% Similarity=0.382 Sum_probs=151.2
Q ss_pred CcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCeecCCCCccee
Q 007417 231 DTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVK 310 (604)
Q Consensus 231 ~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~g~~~r~l~ 310 (604)
++|||+|||+.+|+++|+++|+.||. |.+|.++.++ .++++|||||+|.+.++|.+|+..|++..+ .++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~--i~~v~i~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~----~g~~i~ 72 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGP--IANIKIMIDK--NNKNVNYAFVEYHQSHDANIALQTLNGKQI----ENNIVK 72 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSC--EEEEEEECCC--C-CCEEEEEEEESSHHHHHHHHHHHTTCEE----TTEECE
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCC--eEEEEEEECC--CCCCCCEEEEEeCCHHHHHHHHHHcCCCcc----CCCeeE
Confidence 57999999999999999999999999 9999999885 578999999999999999999999999988 579999
Q ss_pred ecccCCCCCCChhhhccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 007417 311 VAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390 (604)
Q Consensus 311 v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~l 390 (604)
+.++.+..... ....++|||+|||..+++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|.+|+..|
T Consensus 73 v~~~~~~~~~~---~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 149 (166)
T 3md3_A 73 INWAFQSQQSS---SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSM 149 (166)
T ss_dssp EEECCCCCCCC---CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHH
T ss_pred EEEcCCCCCCC---CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh
Confidence 99987665432 234578999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeeCCCccEEEEee
Q 007417 391 NNKEFSDGNSKVKLRA 406 (604)
Q Consensus 391 ng~~~~g~~~~v~~~~ 406 (604)
||..|.|+.|.|.++.
T Consensus 150 ~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 150 QGQDLNGRPLRINWAA 165 (166)
T ss_dssp TTCEETTEECEEEESC
T ss_pred CCCccCCcEEEEEecC
Confidence 9999999999998863
No 10
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.95 E-value=5.1e-28 Score=225.61 Aligned_cols=162 Identities=28% Similarity=0.511 Sum_probs=144.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCC--CCcceEEEEEeehHHHHHHHHhcCCCeee---Ccccc
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTN--RNKGYAFVKFANKEHAKRALTEMKNPVIC---GKRCG 223 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg--~~kG~afV~F~~~e~A~~Al~~l~~~~l~---g~~i~ 223 (604)
+.++|||+|||+++|+++|+++|++||+|.+|+|++++.++ +++|||||+|.+.++|.+|++.|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 57899999999999999999999999999999999998887 89999999999999999999999997766 44555
Q ss_pred cCCCC-------CCCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhC
Q 007417 224 TAPSE-------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQ 296 (604)
Q Consensus 224 v~~~~-------~~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~ 296 (604)
+.++. ..++|||+|||+.+|+++|+++|+.||. |..+.++++. ++.++|||||+|.+.++|.+|+..|+
T Consensus 82 ~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~--i~~v~~~~~~--~g~~~g~afV~f~~~~~A~~A~~~l~ 157 (175)
T 3nmr_A 82 MKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQ--IEECRILRGP--DGLSRGCAFVTFTTRAMAQTAIKAMH 157 (175)
T ss_dssp EEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSC--EEEEEEEECT--TSCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred EccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCC--EEEEEEEECC--CCCEEEEEEEEECCHHHHHHHHHHhc
Confidence 44332 4679999999999999999999999999 9999999884 68899999999999999999999999
Q ss_pred CCCeecCCCCcceeecccC
Q 007417 297 KPDVVFGHPERTVKVAFAE 315 (604)
Q Consensus 297 ~~~~~~g~~~r~l~v~~a~ 315 (604)
+..+..+ .+++|.|.||+
T Consensus 158 g~~~~~g-~~~~l~V~~ad 175 (175)
T 3nmr_A 158 QAQTMEG-CSSPMVVKFAD 175 (175)
T ss_dssp TSCCCTT-CSSCCEEEECC
T ss_pred CCcccCC-CCCCeEEEecC
Confidence 9887643 25899998874
No 11
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.95 E-value=1e-27 Score=221.65 Aligned_cols=158 Identities=25% Similarity=0.448 Sum_probs=145.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCCCC
Q 007417 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSED 229 (604)
Q Consensus 150 ~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~~ 229 (604)
.++|||+|||+++|+++|+++|++||.|.+|++++++.+++++|||||+|.+.++|.+|++.|++..+.|+.|.|..+.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 68999999999999999999999999999999999998999999999999999999999999999999999999876653
Q ss_pred ------CCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCeecC
Q 007417 230 ------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFG 303 (604)
Q Consensus 230 ------~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~g 303 (604)
..+|||+|||..+++++|+++|+.||. |..+.++.+. .++.++|||||+|.+.++|.+|++.|++..+
T Consensus 82 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~--i~~~~i~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--- 155 (167)
T 1fxl_A 82 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGR--IITSRILVDQ-VTGVSRGVGFIRFDKRIEAEEAIKGLNGQKP--- 155 (167)
T ss_dssp CCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSC--EEEEEEEECT-TTCCEEEEEEEEESSHHHHHHHHHHHTTCCC---
T ss_pred CcccCCCCcEEECCCCCcCCHHHHHHHHHhcCC--EeEEEEEecC-CCCCccceEEEEeCCHHHHHHHHHHhcCCcc---
Confidence 578999999999999999999999999 9999999874 4788999999999999999999999999977
Q ss_pred CCCc--ceeeccc
Q 007417 304 HPER--TVKVAFA 314 (604)
Q Consensus 304 ~~~r--~l~v~~a 314 (604)
.++ +|.|.||
T Consensus 156 -~g~~~~i~v~~A 167 (167)
T 1fxl_A 156 -SGATEPITVKFA 167 (167)
T ss_dssp -TTCSSCCEEEEC
T ss_pred -CCCccceEEEeC
Confidence 343 4777664
No 12
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.95 E-value=4.1e-28 Score=224.55 Aligned_cols=159 Identities=24% Similarity=0.479 Sum_probs=146.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCCC
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~ 228 (604)
++++|||+|||+++|+++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|.+|+.. ...|.|+.|.+..+.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 578999999999999999999999999999999999999999999999999999999999995 568999999987765
Q ss_pred C------CCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCeec
Q 007417 229 D------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVF 302 (604)
Q Consensus 229 ~------~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~ 302 (604)
. .++|||+|||+.+|+++|+++|+.||. |..+.++.+. .++.++|||||+|.+.++|.+|++ +++..+
T Consensus 80 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~--i~~~~i~~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~-- 153 (167)
T 2cjk_A 80 PRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGT--IIDAQLMLDK-DTGQSRGFGFVTYDSADAVDRVCQ-NKFIDF-- 153 (167)
T ss_dssp CHHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSC--CSEEECCCSS-SSSTTSEEEEEEESSHHHHHHHHH-CSEECS--
T ss_pred chhhccCCCeEEECCCCCCCCHHHHHHHHHhCcc--EEEEEEEEcC-CCCccceEEEEEECCHHHHHHHHh-CCCEEe--
Confidence 4 579999999999999999999999999 9999999884 478999999999999999999998 777666
Q ss_pred CCCCcceeecccCCC
Q 007417 303 GHPERTVKVAFAEPL 317 (604)
Q Consensus 303 g~~~r~l~v~~a~~~ 317 (604)
.++.|.|.++.|+
T Consensus 154 --~g~~i~V~~a~pk 166 (167)
T 2cjk_A 154 --KDRKIEIKRAEPR 166 (167)
T ss_dssp --SSSCEEEEECCCC
T ss_pred --CCeEEEEeecCCC
Confidence 5799999999875
No 13
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.95 E-value=2e-27 Score=219.72 Aligned_cols=163 Identities=23% Similarity=0.390 Sum_probs=148.5
Q ss_pred CCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCeecCCCCcce
Q 007417 230 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTV 309 (604)
Q Consensus 230 ~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~g~~~r~l 309 (604)
+++|||+|||+.+++++|+++|+.||. |..+.+++++ .+++++|||||+|.+.++|.+|+..|++..+ .++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~--i~~v~~~~~~-~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~----~g~~l 74 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGE--IESCKLVRDK-ITGQSLGYGFVNYIDPKDAEKAINTLNGLRL----QTKTI 74 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSC--EEEEEEEECT-TTCCEEEEEEEEESSHHHHHHHHHHHTTCEE----TTEEC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCC--eEEEEEEeCC-CCCcceeEEEEEECCHHHHHHHHHHcCCCcc----CCceE
Confidence 578999999999999999999999999 9999999884 4789999999999999999999999999887 57999
Q ss_pred eecccCCCCCCChhhhccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 007417 310 KVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389 (604)
Q Consensus 310 ~v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~ 389 (604)
.|.++.+.... ...++|||+|||..+++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|.+|+..
T Consensus 75 ~v~~~~~~~~~-----~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 149 (167)
T 1fxl_A 75 KVSYARPSSAS-----IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 149 (167)
T ss_dssp EEEECCCCCGG-----GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEecCCCccc-----CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHH
Confidence 99998865432 2357899999999999999999999999999999999988999999999999999999999999
Q ss_pred hcCCeeCCCccEEEE
Q 007417 390 INNKEFSDGNSKVKL 404 (604)
Q Consensus 390 lng~~~~g~~~~v~~ 404 (604)
|||..|.|+.+.|.+
T Consensus 150 l~g~~~~g~~~~i~v 164 (167)
T 1fxl_A 150 LNGQKPSGATEPITV 164 (167)
T ss_dssp HTTCCCTTCSSCCEE
T ss_pred hcCCccCCCccceEE
Confidence 999999998744443
No 14
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.95 E-value=9.8e-28 Score=221.52 Aligned_cols=158 Identities=25% Similarity=0.439 Sum_probs=145.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCCC--
Q 007417 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE-- 228 (604)
Q Consensus 151 ~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~-- 228 (604)
++|||+|||+++|+++|+++|++||.|.+|+|++++. ++++|||||+|.+.++|.+|+..|++..+.|+.|.|..+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 6899999999999999999999999999999999864 7899999999999999999999999999999999886543
Q ss_pred ------CCCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCeec
Q 007417 229 ------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVF 302 (604)
Q Consensus 229 ------~~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~ 302 (604)
...+|||+|||..+|+++|+++|+.||. |..+.++.+. .++.++|+|||+|.+.++|.+|+..|++..+
T Consensus 80 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~--i~~~~i~~~~-~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-- 154 (166)
T 3md3_A 80 QQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPS--YLSGHVMWDM-QTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL-- 154 (166)
T ss_dssp CCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTT--EEEEEEEECT-TTCCEEEEEEEEESCHHHHHHHHHHHTTCEE--
T ss_pred CCCCCCCCceEEECCCCCCCCHHHHHHHHhccCC--eeEEEEEecC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCcc--
Confidence 3568999999999999999999999999 9999999884 5789999999999999999999999999987
Q ss_pred CCCCcceeecccCC
Q 007417 303 GHPERTVKVAFAEP 316 (604)
Q Consensus 303 g~~~r~l~v~~a~~ 316 (604)
.++.|.|.|+.+
T Consensus 155 --~g~~i~v~~a~~ 166 (166)
T 3md3_A 155 --NGRPLRINWAAK 166 (166)
T ss_dssp --TTEECEEEESCC
T ss_pred --CCcEEEEEecCC
Confidence 579999999853
No 15
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.95 E-value=1.3e-27 Score=241.22 Aligned_cols=161 Identities=17% Similarity=0.240 Sum_probs=150.8
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCCC--
Q 007417 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE-- 228 (604)
Q Consensus 151 ~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~-- 228 (604)
++|||+|||+++|+++|+++|++||.|..|+++.++.+++++|||||+|.+.++|.+|+..|++..|.|+.|.|..+.
T Consensus 96 ~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~ 175 (284)
T 3smz_A 96 ALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAG 175 (284)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGG
T ss_pred CEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 699999999999999999999999999999999999999999999999999999999999999999999999986654
Q ss_pred -------CCCcceecccCCCC-cHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCe
Q 007417 229 -------DNDTLFVGNICNTW-TKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV 300 (604)
Q Consensus 229 -------~~~~l~v~nlp~~~-te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~ 300 (604)
..++|||+|||+.+ |+++|+++|+.||. |..+.|+.+. +++++|+|||+|.+.++|.+|+..|++..+
T Consensus 176 ~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~--i~~v~i~~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 251 (284)
T 3smz_A 176 QLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHS--PTFCQLACGQ--DGQLKGFAVLEYETAEMAEEAQQQADGLSL 251 (284)
T ss_dssp GCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSC--CSEEEEEECS--SCCEEEEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCC--eEEEEEEECC--CCCcccEEEEEeCCHHHHHHHHHHhCCCcc
Confidence 35789999999995 99999999999999 9999999874 789999999999999999999999999988
Q ss_pred ecCCCCcceeecccCCCCC
Q 007417 301 VFGHPERTVKVAFAEPLRE 319 (604)
Q Consensus 301 ~~g~~~r~l~v~~a~~~~~ 319 (604)
.++.|.|.++.+...
T Consensus 252 ----~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 252 ----GGSHLRVSFCAPGPP 266 (284)
T ss_dssp ----TTEECEEEECCSSSC
T ss_pred ----CCeEEEEEEecCCCc
Confidence 679999999987654
No 16
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.95 E-value=1.1e-26 Score=216.58 Aligned_cols=168 Identities=23% Similarity=0.418 Sum_probs=147.3
Q ss_pred CCCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCC--CcccEEEEEecCHHHHHHHHHHhCCCCeecCCCC
Q 007417 229 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEG--LSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 306 (604)
Q Consensus 229 ~~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g--~skG~afV~f~~~e~A~~Al~~l~~~~~~~g~~~ 306 (604)
+.++|||+|||+.+|+++|+++|++||. |.+|.++++. .++ +++|||||+|.+.++|.+|++.|++..+..+ ..
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~--i~~v~i~~~~-~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~-~~ 77 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGA--VYEINVLRDR-SQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPG-MH 77 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSC--EEEEEEEEEC-SSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTT-CS
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCC--EEEEEEEecC-CCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccC-Cc
Confidence 4578999999999999999999999999 9999999885 344 8999999999999999999999999887533 35
Q ss_pred cceeecccCCCCCCChhhhccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHH
Q 007417 307 RTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386 (604)
Q Consensus 307 r~l~v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A 386 (604)
+.+.+.++.+..... ...++|||+|||+.+|+++|+++|++||.|..|.|+++. ++.++|||||+|.+.++|.+|
T Consensus 78 ~~~~~~~~~~~~~~~----~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A 152 (175)
T 3nmr_A 78 HPIQMKPADSEKNNA----VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTA 152 (175)
T ss_dssp SCCEEEECGGGCCSC----GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHH
T ss_pred cceEEcccccccccc----CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHH
Confidence 777887776544332 245789999999999999999999999999999999985 589999999999999999999
Q ss_pred HHHhcCCeeCC---CccEEEEe
Q 007417 387 INAINNKEFSD---GNSKVKLR 405 (604)
Q Consensus 387 ~~~lng~~~~g---~~~~v~~~ 405 (604)
+..|||..+.+ +.|.|.++
T Consensus 153 ~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 153 IKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp HHHHTTSCCCTTCSSCCEEEEC
T ss_pred HHHhcCCcccCCCCCCeEEEec
Confidence 99999988774 88888875
No 17
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.94 E-value=2.3e-26 Score=219.71 Aligned_cols=156 Identities=19% Similarity=0.244 Sum_probs=136.0
Q ss_pred CCCEEEEcCCC-CCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCC
Q 007417 149 KEHEIFIGGLD-RDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (604)
Q Consensus 149 ~~~~vfV~nLp-~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (604)
.+++|||+||| +.+|+++|+++|++||.|.+|+|+++ ++|||||+|.+.++|++|++.||+..|.|+.|.|..+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 57899999999 89999999999999999999999865 3799999999999999999999999999999988643
Q ss_pred C-------------------------------------------CCCcceecccCCCCcHHHHHHHHHhcCCcce--eEE
Q 007417 228 E-------------------------------------------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGV--ENI 262 (604)
Q Consensus 228 ~-------------------------------------------~~~~l~v~nlp~~~te~~l~~~f~~~G~~~v--~~i 262 (604)
. +.++|||+|||+++|+++|+++|++||. | ..+
T Consensus 78 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~--v~~~~v 155 (205)
T 3tyt_A 78 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGV--KRPTSV 155 (205)
T ss_dssp SCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTC--CCCSEE
T ss_pred cCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCC--cceEEE
Confidence 2 1236999999999999999999999998 7 899
Q ss_pred EEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCeecCCCCcceeeccc
Q 007417 263 NLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFA 314 (604)
Q Consensus 263 ~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~g~~~r~l~v~~a 314 (604)
+++.+. +.++|+|||+|.+.++|.+|+..||+..+.......++.|+++
T Consensus 156 ~~~~~~---~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 156 KVFSGK---SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp EECSCC---SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EEEcCC---CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 988762 5567999999999999999999999998854444456666553
No 18
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.94 E-value=6.3e-27 Score=216.58 Aligned_cols=163 Identities=18% Similarity=0.379 Sum_probs=145.1
Q ss_pred CCCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCeecCCCCcc
Q 007417 229 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 308 (604)
Q Consensus 229 ~~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~g~~~r~ 308 (604)
+.++|||+|||+.+|+++|+++|+.||. |.+|.+++++ .+++++|||||+|.+.++|.+|+.. ...+ .++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~--i~~v~i~~~~-~~g~~~g~afV~f~~~~~a~~A~~~--~~~~----~g~~ 72 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGT--VTDLKIMKDP-ATGRSRGFGFLSFEKPSSVDEVVKT--QHIL----DGKV 72 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCC--EEEEECCCCT-TTSSCCSCEEEEESSTHHHHHHHHS--CCEE----TTEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCC--EEEEEEEECC-CCCCccceEEEEEccHHHHHHHHhc--cccc----CCeE
Confidence 4679999999999999999999999999 9999999884 5789999999999999999999984 2223 4688
Q ss_pred eeecccCCCCCCChhhhccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 007417 309 VKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN 388 (604)
Q Consensus 309 l~v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~ 388 (604)
+.+.++.+.. .....++|||+|||..+++++|+++|++||.|..+.|+.++.++.++|||||+|.+.++|.+|++
T Consensus 73 i~v~~~~~~~-----~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 147 (167)
T 2cjk_A 73 IDPKRAIPRD-----EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ 147 (167)
T ss_dssp CCCEECCCHH-----HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH
T ss_pred cccccccchh-----hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh
Confidence 8888776532 23345789999999999999999999999999999999998899999999999999999999998
Q ss_pred HhcCCeeCCCccEEEEee
Q 007417 389 AINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 389 ~lng~~~~g~~~~v~~~~ 406 (604)
+|+..|.|+.|.|.++.
T Consensus 148 -~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 148 -NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp -CSEECSSSSCEEEEECC
T ss_pred -CCCEEeCCeEEEEeecC
Confidence 89999999999998764
No 19
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.94 E-value=5.7e-26 Score=228.93 Aligned_cols=250 Identities=15% Similarity=0.218 Sum_probs=150.1
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHH----HHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcc
Q 007417 146 KIKKEHEIFIGGLDRDATQEDVR----KVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKR 221 (604)
Q Consensus 146 ~~~~~~~vfV~nLp~~~te~dL~----~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~ 221 (604)
+...+++|||+|||+++|+++|+ ++|++||.|.+|+|++ +++++|||||+|.+.++|.+|++.|++..|.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 34578999999999999999977 8999999999999975 6889999999999999999999999999999999
Q ss_pred cccCCCCCCCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEe----cCHH-HHHHHHHHhC
Q 007417 222 CGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF----SCHV-DAMAAYKRLQ 296 (604)
Q Consensus 222 i~v~~~~~~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f----~~~e-~A~~Al~~l~ 296 (604)
|.|..+............ ...+......-..... ...................+.+.= .... .+...+..+.
T Consensus 82 l~v~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (282)
T 3pgw_A 82 MRIQYAKTDSDIIAKMKG-TFVERDRKREKRKPKS--QETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMP 158 (282)
T ss_pred EEEEEeccCcchhhhhcC-Ccccchhhhhhhhccc--cchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCC
Confidence 999887554332211111 0000000000000000 000000000000000000000000 0000 0000000000
Q ss_pred CCCeecCCCCcc-----eeecccC---------CC---CCCChhhhccccccccCCCCcccChhhHHhhhcccCCEEEEE
Q 007417 297 KPDVVFGHPERT-----VKVAFAE---------PL---REPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIV 359 (604)
Q Consensus 297 ~~~~~~g~~~r~-----l~v~~a~---------~~---~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~ 359 (604)
+..-........ ....... +. ...........++|||+|||..+++++|+++|++||.|..|+
T Consensus 159 g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~ 238 (282)
T 3pgw_A 159 GQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVR 238 (282)
T ss_pred CCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEE
Confidence 000000000000 0000000 00 000001222457899999999999999999999999999999
Q ss_pred EeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeC-CCccEEEEee
Q 007417 360 LARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS-DGNSKVKLRA 406 (604)
Q Consensus 360 i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~-g~~~~v~~~~ 406 (604)
|+.++ +|||||+|.+.++|.+|+..|||..|. |+.|+|.|+.
T Consensus 239 ~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 239 LVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred EecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 98653 689999999999999999999999999 9999998863
No 20
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.94 E-value=3.3e-26 Score=212.83 Aligned_cols=153 Identities=23% Similarity=0.439 Sum_probs=140.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcc----C-------CeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCe
Q 007417 148 KKEHEIFIGGLDRDATQEDVRKVFERI----G-------EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPV 216 (604)
Q Consensus 148 ~~~~~vfV~nLp~~~te~dL~~~F~~~----G-------~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~ 216 (604)
++.++|||+|||+++|+++|+++|++| | .|.++.+. +++|||||+|.+.++|.+|+ .|++..
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~ 74 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGII 74 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcE
Confidence 357899999999999999999999999 6 77777774 45899999999999999999 799999
Q ss_pred eeCcccccCCCCC------CCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHH
Q 007417 217 ICGKRCGTAPSED------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMA 290 (604)
Q Consensus 217 l~g~~i~v~~~~~------~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~ 290 (604)
|.|+.|.|..+.. .++|||+|||+.+|+++|+++|++||. |..+.++.++ .++.++|||||+|.+.++|.+
T Consensus 75 ~~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~--v~~v~i~~~~-~~g~~~g~afV~f~~~~~A~~ 151 (172)
T 2g4b_A 75 FQGQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGP--LKAFNLVKDS-ATGLSKGYAFCEYVDINVTDQ 151 (172)
T ss_dssp ETTEECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSC--EEEEEEEECT-TTCSEEEEEEEEESSTTHHHH
T ss_pred ecCceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCC--ceEEEEEecC-CCCCcceEEEEEeCCHHHHHH
Confidence 9999999977654 489999999999999999999999999 9999999884 488999999999999999999
Q ss_pred HHHHhCCCCeecCCCCcceeeccc
Q 007417 291 AYKRLQKPDVVFGHPERTVKVAFA 314 (604)
Q Consensus 291 Al~~l~~~~~~~g~~~r~l~v~~a 314 (604)
|+..|++..+ .++.|.|.+|
T Consensus 152 A~~~l~g~~~----~g~~l~V~~A 171 (172)
T 2g4b_A 152 AIAGLNGMQL----GDKKLLVQRA 171 (172)
T ss_dssp HHHHHTTCEE----TTEECEEEEC
T ss_pred HHHHcCCCEE----CCeEEEEEeC
Confidence 9999999888 5799999886
No 21
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.94 E-value=9.3e-27 Score=235.96 Aligned_cols=160 Identities=18% Similarity=0.369 Sum_probs=140.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccC-CeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCCC
Q 007417 150 EHEIFIGGLDRDATQEDVRKVFERIG-EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (604)
Q Consensus 150 ~~~vfV~nLp~~~te~dL~~~F~~~G-~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~ 228 (604)
.++|||+|||+++|+++|+++|++|| .|..|+|++++. +.++|||||+|.+.++|.+|+..|++..|.|+.|.|..+.
T Consensus 117 ~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 117 ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 68999999999999999999999999 999999998865 7899999999999999999999999999999999987543
Q ss_pred -------------CCCcceecccCCC-CcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHH
Q 007417 229 -------------DNDTLFVGNICNT-WTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKR 294 (604)
Q Consensus 229 -------------~~~~l~v~nlp~~-~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~ 294 (604)
..++|||+|||+. +|+++|+++|+.||. |..|.++.+...++.++|||||+|.+.++|.+|+ .
T Consensus 196 ~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~--v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~ 272 (292)
T 2ghp_A 196 PLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGS--IEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-Q 272 (292)
T ss_dssp CC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSC--EEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-G
T ss_pred CCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCC--eeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-H
Confidence 2478999999999 999999999999999 9999999875334899999999999999999999 9
Q ss_pred hCCCCeecCCCCcceeecccCCC
Q 007417 295 LQKPDVVFGHPERTVKVAFAEPL 317 (604)
Q Consensus 295 l~~~~~~~g~~~r~l~v~~a~~~ 317 (604)
|++..+ .++.|.|.|+.++
T Consensus 273 l~g~~~----~g~~i~V~~a~~k 291 (292)
T 2ghp_A 273 MNRSLL----GNREISVSLADKK 291 (292)
T ss_dssp GTTEEE----TTEEEEEEECCCC
T ss_pred hcCCEE----CCcEEEEEEecCC
Confidence 999887 5799999999875
No 22
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.94 E-value=4.2e-26 Score=212.08 Aligned_cols=160 Identities=19% Similarity=0.334 Sum_probs=141.6
Q ss_pred CCCcceecccCCCCcHHHHHHHHHhc----CCc-----ceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCC
Q 007417 229 DNDTLFVGNICNTWTKEAIKQKLKDY----GVE-----GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPD 299 (604)
Q Consensus 229 ~~~~l~v~nlp~~~te~~l~~~f~~~----G~~-----~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~ 299 (604)
+.++|||+|||+.+|+++|+++|+.| |.. .|.++.+. +++|||||+|.+.++|.+|+ .+++..
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~-------~~~g~afV~f~~~~~A~~A~-~~~~~~ 74 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-------QDKNFAFLEFRSVDETTQAM-AFDGII 74 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE-------TTTTEEEEEESSHHHHHHHG-GGTTCE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec-------CCCCEEEEEeCCHHHHHHHH-HhCCcE
Confidence 45799999999999999999999999 510 16666654 34899999999999999999 899988
Q ss_pred eecCCCCcceeecccCCCCCCChhhhccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCC
Q 007417 300 VVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFST 379 (604)
Q Consensus 300 ~~~g~~~r~l~v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~ 379 (604)
+ .++.+.|.++.+..... ..++|||+|||+.+++++|+++|++||.|..|.+++++.++.++|||||+|.+
T Consensus 75 ~----~g~~i~v~~~~~~~~~~-----~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~ 145 (172)
T 2g4b_A 75 F----QGQSLKIRRPHDYQPLP-----GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVD 145 (172)
T ss_dssp E----TTEECEEECCSSCCCCT-----TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESS
T ss_pred e----cCceeeecCCcccCCCC-----CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCC
Confidence 7 57999999876644322 25799999999999999999999999999999999998899999999999999
Q ss_pred HHHHHHHHHHhcCCeeCCCccEEEEe
Q 007417 380 HEAAVACINAINNKEFSDGNSKVKLR 405 (604)
Q Consensus 380 ~~~A~~A~~~lng~~~~g~~~~v~~~ 405 (604)
.++|.+|+..|||..|.|+.|.|.++
T Consensus 146 ~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 146 INVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred HHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 99999999999999999999999875
No 23
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.94 E-value=3.6e-26 Score=227.61 Aligned_cols=162 Identities=25% Similarity=0.421 Sum_probs=150.8
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCC
Q 007417 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (604)
Q Consensus 147 ~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (604)
....++|||+|||+++|+++|+++|++||.|..|+|.+ ++|||||+|.+.++|.+|+..|++..|.|+.|.|..
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 34678999999999999999999999999999999954 489999999999999999999999999999999999
Q ss_pred CCCCCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCeecCCCC
Q 007417 227 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 306 (604)
Q Consensus 227 ~~~~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~g~~~ 306 (604)
+.+..+|||+|||+.+|+++|+++|..||. |..|.++.+. +++++|||||+|.+.++|.+|+..|++..++....+
T Consensus 93 a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~--i~~v~i~~~~--~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~ 168 (261)
T 3sde_A 93 ATHGAALTVKNLSPVVSNELLEQAFSQFGP--VEKAVVVVDD--RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTP 168 (261)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSC--EEEEEEEEET--TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSC
T ss_pred cccCCcccccCCCCCCCHHHHHHHHHhcCC--eEEEEeeeCC--CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCC
Confidence 999999999999999999999999999999 9999999883 889999999999999999999999988777776678
Q ss_pred cceeecccCCCC
Q 007417 307 RTVKVAFAEPLR 318 (604)
Q Consensus 307 r~l~v~~a~~~~ 318 (604)
++|.|.++.+..
T Consensus 169 r~i~v~~~~~~~ 180 (261)
T 3sde_A 169 RPVIVEPMEQFD 180 (261)
T ss_dssp CBCEEEECCCEE
T ss_pred ceEEEeeccccC
Confidence 999999987653
No 24
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.93 E-value=1.3e-25 Score=213.87 Aligned_cols=157 Identities=22% Similarity=0.412 Sum_probs=140.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcc----C-------CeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCee
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFERI----G-------EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVI 217 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~~----G-------~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l 217 (604)
..++|||+|||+++|+++|+++|++| | .|.++.+ ++++|||||+|.+.++|.+|+ .|++..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 57999999999999999999999999 5 5666665 466999999999999999999 7999999
Q ss_pred eCcccccCCCC--------------------------CCCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCC
Q 007417 218 CGKRCGTAPSE--------------------------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE 271 (604)
Q Consensus 218 ~g~~i~v~~~~--------------------------~~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~ 271 (604)
.|+.|.|..+. ..++|||+|||+.+++++|+++|+.||. |..|.++.+. .+
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~--v~~~~~~~~~-~~ 152 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGP--LKAFNLVKDS-AT 152 (198)
T ss_dssp TTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSC--EEEEEEEECT-TT
T ss_pred cCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCC--ccEEEEeecC-CC
Confidence 99999886643 3489999999999999999999999999 9999999884 47
Q ss_pred CCcccEEEEEecCHHHHHHHHHHhCCCCeecCCCCcceeecccCCCCC
Q 007417 272 GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLRE 319 (604)
Q Consensus 272 g~skG~afV~f~~~e~A~~Al~~l~~~~~~~g~~~r~l~v~~a~~~~~ 319 (604)
+.++|||||+|.+.++|.+|+..|++..+ .++.|.|.++.+...
T Consensus 153 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~----~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 153 GLSKGYAFCEYVDINVTDQAIAGLNGMQL----GDKKLLVQRASVGAK 196 (198)
T ss_dssp CSEEEEEEEEESSSSHHHHHHHHHTTCEE----TTEECEEEESCCCCC
T ss_pred CCcceEEEEEECCHHHHHHHHHHcCCCEE----CCEEEEEEECCCCCC
Confidence 89999999999999999999999999888 689999999987543
No 25
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.93 E-value=1.2e-26 Score=216.65 Aligned_cols=158 Identities=18% Similarity=0.338 Sum_probs=140.0
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccC
Q 007417 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (604)
Q Consensus 146 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (604)
.....++|||+|||+++|+++|+++|++||.|.. .++++..+++++|||||+|.+.++|.+|++ |++..|.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 3457899999999999999999999999998766 345555778999999999999999999995 99999999999997
Q ss_pred CCCC--------CCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCC
Q 007417 226 PSED--------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQK 297 (604)
Q Consensus 226 ~~~~--------~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~ 297 (604)
.+.. .++|||+|||..+|+++|+++|+.+|. |..+ ..++.++|||||+|.+.++|.+|+..|++
T Consensus 87 ~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~--v~~~------~~~~~~~g~afV~f~~~~~A~~A~~~l~g 158 (175)
T 1fje_B 87 KPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALE--IRLV------SQDGKSKGIAYIEFKSEADAEKNLEEKQG 158 (175)
T ss_dssp CCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSE--EEEE------CSSSSCCSEEEEECSSHHHHHHHHHHHTE
T ss_pred cCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCe--EEEe------cCCCCCceEEEEEECCHHHHHHHHHHhCC
Confidence 7653 579999999999999999999999987 6554 23788999999999999999999999999
Q ss_pred CCeecCCCCcceeecccCCC
Q 007417 298 PDVVFGHPERTVKVAFAEPL 317 (604)
Q Consensus 298 ~~~~~g~~~r~l~v~~a~~~ 317 (604)
..+ .++.|.|.|+.++
T Consensus 159 ~~~----~g~~i~v~~a~~k 174 (175)
T 1fje_B 159 AEI----DGRSVSLYYTGEK 174 (175)
T ss_dssp EEE----TTEEEEEEECSSC
T ss_pred CEE----CCeEEEEEecCCC
Confidence 877 5799999999875
No 26
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.93 E-value=2.3e-25 Score=212.11 Aligned_cols=167 Identities=17% Similarity=0.285 Sum_probs=142.1
Q ss_pred CCCcceecccCCCCcHHHHHHHHHhcCC----c-----ceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCC
Q 007417 229 DNDTLFVGNICNTWTKEAIKQKLKDYGV----E-----GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPD 299 (604)
Q Consensus 229 ~~~~l~v~nlp~~~te~~l~~~f~~~G~----~-----~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~ 299 (604)
..++|||+|||+.+|+++|+++|+.||. . .|..+.+ ++++|||||+|.+.++|.+|+ .|++..
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~-------~~~~g~afV~F~~~~~A~~Al-~l~g~~ 74 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-------NQDKNFAFLEFRSVDETTQAM-AFDGII 74 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE-------ETTTTEEEEEESCSHHHHHHG-GGTTEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe-------cCCCCEEEEEeCCHHHHHHHH-HhcCCE
Confidence 3579999999999999999999999953 0 1444444 345899999999999999999 899887
Q ss_pred eecCCCCcceeecccCCCCCCCh---------------hhhccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecC
Q 007417 300 VVFGHPERTVKVAFAEPLREPDP---------------EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNM 364 (604)
Q Consensus 300 ~~~g~~~r~l~v~~a~~~~~~~~---------------~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~ 364 (604)
+ .++.|.|.++.+...... ......++|||+|||+.+++++|+++|++||.|..|.|++++
T Consensus 75 ~----~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~ 150 (198)
T 2yh0_A 75 F----QGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDS 150 (198)
T ss_dssp E----TTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECT
T ss_pred E----cCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecC
Confidence 7 579999998865422110 111345899999999999999999999999999999999998
Q ss_pred CCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEeee
Q 007417 365 STAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407 (604)
Q Consensus 365 ~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~~ 407 (604)
.++.++|||||+|.++++|.+|+..|||..|.|+.|.|.++..
T Consensus 151 ~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 193 (198)
T 2yh0_A 151 ATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASV 193 (198)
T ss_dssp TTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 8999999999999999999999999999999999999988643
No 27
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.93 E-value=1.9e-25 Score=213.35 Aligned_cols=157 Identities=15% Similarity=0.201 Sum_probs=135.3
Q ss_pred CCCcceecccC-CCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCeecCCCCc
Q 007417 229 DNDTLFVGNIC-NTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 307 (604)
Q Consensus 229 ~~~~l~v~nlp-~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~g~~~r 307 (604)
++++|||+||+ ..+|+++|+++|+.||. |.+|+++++ ++|||||+|.+.++|.+|++.|++..+ .++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~--v~~v~i~~~------~~g~afV~f~~~~~A~~Ai~~lng~~~----~g~ 70 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGN--VEKVKFMKS------KPGAAMVEMADGYAVDRAITHLNNNFM----FGQ 70 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSC--EEEEEECTT------STTCEEEEESSHHHHHHHHHHHTTCEE----TTE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCC--eEEEEEecC------CCCEEEEEECCHHHHHHHHHHhCCCEE----CCc
Confidence 46789999999 89999999999999999 999999875 379999999999999999999999988 579
Q ss_pred ceeecccCCCCCCC--------------------------h------hhhccccccccCCCCcccChhhHHhhhcccCCE
Q 007417 308 TVKVAFAEPLREPD--------------------------P------EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDV 355 (604)
Q Consensus 308 ~l~v~~a~~~~~~~--------------------------~------~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v 355 (604)
.|.|.++....... + ....+.++|||+|||+.+|+++|+++|++||.|
T Consensus 71 ~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v 150 (205)
T 3tyt_A 71 KMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVK 150 (205)
T ss_dssp ECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCC
T ss_pred eEEEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCc
Confidence 99999885322100 0 001224579999999999999999999999999
Q ss_pred --EEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCc
Q 007417 356 --IRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGN 399 (604)
Q Consensus 356 --~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~ 399 (604)
..++++.+. +.++|||||+|.+.++|.+||..|||..|.|+.
T Consensus 151 ~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~ 194 (205)
T 3tyt_A 151 RPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPN 194 (205)
T ss_dssp CCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSS
T ss_pred ceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCC
Confidence 899998774 556799999999999999999999999999884
No 28
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.93 E-value=1e-25 Score=210.24 Aligned_cols=166 Identities=16% Similarity=0.239 Sum_probs=142.3
Q ss_pred cCCCCCCCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCeecC
Q 007417 224 TAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFG 303 (604)
Q Consensus 224 v~~~~~~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~g 303 (604)
+......++|||+|||+.+|+++|+++|..+|. +..+. +.+ ..++.++|||||+|.+.++|.+|+ +|++..+
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~--~~~~~-~~~-~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~--- 78 (175)
T 1fje_B 7 GSESTTPFNLFIGNLNPNKSVAELKVAISELFA--KNDLA-VVD-VRTGTNRKFGYVDFESAEDLEKAL-ELTGLKV--- 78 (175)
T ss_dssp SSSCSSSEEEEEECCCTTSCHHHHHHHHHHHHH--HHTCC-CCE-EEEETTTTEEEEEESSHHHHHHHH-HGGGEEE---
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCC--cceEE-EEE-CCCCccccEEEEEECCHHHHHHHH-hcCCCEe---
Confidence 345567899999999999999999999999997 55532 333 236789999999999999999999 5999887
Q ss_pred CCCcceeecccCCCCCCChhhhccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHH
Q 007417 304 HPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 383 (604)
Q Consensus 304 ~~~r~l~v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A 383 (604)
.++.|.|.++.+..... ....++|||+|||..+++++|+++|++||.|..+ ..++.++|||||+|.+.++|
T Consensus 79 -~g~~l~v~~~~~~~~~~---~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A 149 (175)
T 1fje_B 79 -FGNEIKLEKPKGRDSKK---VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADA 149 (175)
T ss_dssp -TTEEEEEECCCCSSCST---TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHH
T ss_pred -CCeEEEEecCCCccccc---cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHH
Confidence 57999999998754432 2346799999999999999999999999988765 46789999999999999999
Q ss_pred HHHHHHhcCCeeCCCccEEEEee
Q 007417 384 VACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 384 ~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
.+|+..|||..|.|+.|.|.++.
T Consensus 150 ~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 150 EKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp HHHHHHHTEEEETTEEEEEEECS
T ss_pred HHHHHHhCCCEECCeEEEEEecC
Confidence 99999999999999998888763
No 29
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.92 E-value=1.1e-24 Score=212.36 Aligned_cols=155 Identities=21% Similarity=0.324 Sum_probs=139.7
Q ss_pred cCCCCEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccC
Q 007417 147 IKKEHEIFIGGLDR-DATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (604)
Q Consensus 147 ~~~~~~vfV~nLp~-~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (604)
...+++|||+|||+ ++|+++|+++|++||.|.+|+|++++ +|||||+|.+.++|.+|++.|++..|.|+.|.|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 45789999999999 99999999999999999999998774 7899999999999999999999999999999886
Q ss_pred CCCC-----------------------------------------CCcceecccCCCCcHHHHHHHHHhcC-CcceeEEE
Q 007417 226 PSED-----------------------------------------NDTLFVGNICNTWTKEAIKQKLKDYG-VEGVENIN 263 (604)
Q Consensus 226 ~~~~-----------------------------------------~~~l~v~nlp~~~te~~l~~~f~~~G-~~~v~~i~ 263 (604)
.+.. .++|||+|||..+++++|+++|..|| . |..|.
T Consensus 106 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~--i~~v~ 183 (229)
T 2adc_A 106 LSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGV--VKGFK 183 (229)
T ss_dssp CCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCC--EEEEE
T ss_pred EecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCC--eeEEE
Confidence 5431 46799999999999999999999999 8 99999
Q ss_pred EeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCeecCCCCcceeecccCCC
Q 007417 264 LVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPL 317 (604)
Q Consensus 264 i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~g~~~r~l~v~~a~~~ 317 (604)
++.+ .+|+|||+|.+.++|.+|+..|++..+. .++.|.|.|+.+.
T Consensus 184 i~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~---~g~~l~v~~a~~~ 228 (229)
T 2adc_A 184 FFQK------DRKMALIQMGSVEEAVQALIDLHNHDLG---ENHHLRVSFSKST 228 (229)
T ss_dssp ECSS------STTCEEEEESSHHHHHHHHHHHTTCBSS---SSCBCEEEECSSC
T ss_pred EEEC------CCcEEEEEECCHHHHHHHHHHHCCCccC---CCCeEEEEEecCC
Confidence 9763 3789999999999999999999998882 2799999998763
No 30
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.92 E-value=1.1e-24 Score=207.59 Aligned_cols=153 Identities=22% Similarity=0.336 Sum_probs=137.8
Q ss_pred CCCEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCC
Q 007417 149 KEHEIFIGGLDR-DATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (604)
Q Consensus 149 ~~~~vfV~nLp~-~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (604)
.+++|||+|||+ ++|+++|+++|++||.|.+|+|++++ +|||||+|.+.++|.+|+..|++..|.|+.|.|..+
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 468999999999 99999999999999999999998764 789999999999999999999999999999988543
Q ss_pred C-----------------------------------------CCCcceecccCCCCcHHHHHHHHHhcC-CcceeEEEEe
Q 007417 228 E-----------------------------------------DNDTLFVGNICNTWTKEAIKQKLKDYG-VEGVENINLV 265 (604)
Q Consensus 228 ~-----------------------------------------~~~~l~v~nlp~~~te~~l~~~f~~~G-~~~v~~i~i~ 265 (604)
. +.++|||+|||..+++++|+++|+.|| . |..+.++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~--v~~v~i~ 154 (198)
T 1qm9_A 77 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGV--VKGFKFF 154 (198)
T ss_dssp CCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSC--CCEEEES
T ss_pred cCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCC--ceEEEEE
Confidence 2 256799999999999999999999999 8 9999997
Q ss_pred ccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCeecCCCCcceeecccCCC
Q 007417 266 SDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPL 317 (604)
Q Consensus 266 ~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~g~~~r~l~v~~a~~~ 317 (604)
.+ .+|+|||+|.+.++|.+|+..|++..+. .++.|.|.|+.+.
T Consensus 155 ~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~---~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 155 QK------DRKMALIQMGSVEEAVQALIDLHNHDLG---ENHHLRVSFSKST 197 (198)
T ss_dssp ST------TSSCEEEECSSHHHHHHHHHHHTSSCCS---SCCSCCEEEECCC
T ss_pred eC------CCcEEEEEeCCHHHHHHHHHHhcCCccC---CCCeEEEEeeccc
Confidence 64 2789999999999999999999998882 2799999998763
No 31
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.91 E-value=4.4e-24 Score=208.20 Aligned_cols=165 Identities=17% Similarity=0.290 Sum_probs=143.2
Q ss_pred CCCCCCCcceecccCC-CCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCeecC
Q 007417 225 APSEDNDTLFVGNICN-TWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFG 303 (604)
Q Consensus 225 ~~~~~~~~l~v~nlp~-~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~g 303 (604)
....+.++|||+|||+ .+++++|+++|+.||. |.+|.++++. +|||||+|.+.++|.+|+..|++..+
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~--i~~v~i~~~~------~g~afV~F~~~~~A~~Ai~~l~g~~~--- 97 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGD--VQRVKILFNK------KENALVQMADGNQAQLAMSHLNGHKL--- 97 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTC--EEEEEECCTT------SCCEEEEESCHHHHHHHHHHHTTCBC---
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCC--eEEEEEEECC------CCEEEEEECCHHHHHHHHHHhCCCeE---
Confidence 3445678999999999 9999999999999999 9999999873 78999999999999999999999888
Q ss_pred CCCcceeecccCCCCCCCh------------------------------hhhccccccccCCCCcccChhhHHhhhcccC
Q 007417 304 HPERTVKVAFAEPLREPDP------------------------------EIMAHVKTVFLDGVPPHWKENQIRDQIKGYG 353 (604)
Q Consensus 304 ~~~r~l~v~~a~~~~~~~~------------------------------~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G 353 (604)
.++.|.|.++.+.....+ ......++|||+|||..+++++|+++|++||
T Consensus 98 -~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G 176 (229)
T 2adc_A 98 -HGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNG 176 (229)
T ss_dssp -SSSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTS
T ss_pred -CCeEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcC
Confidence 579999998875421110 0112357899999999999999999999999
Q ss_pred -CEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeC-CCccEEEEee
Q 007417 354 -DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS-DGNSKVKLRA 406 (604)
Q Consensus 354 -~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~-g~~~~v~~~~ 406 (604)
.|..|.|+.+ .+|||||+|.+.++|.+|+..|||..|. |+.|.|.++.
T Consensus 177 ~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~ 226 (229)
T 2adc_A 177 GVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 226 (229)
T ss_dssp CCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECS
T ss_pred CCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEec
Confidence 9999999753 3789999999999999999999999999 9999998864
No 32
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.91 E-value=3.8e-24 Score=212.93 Aligned_cols=156 Identities=19% Similarity=0.332 Sum_probs=140.8
Q ss_pred CCCCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCeecCCCCc
Q 007417 228 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 307 (604)
Q Consensus 228 ~~~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~g~~~r 307 (604)
...++|||+|||+.+|+++|+++|+.||. |..|.+.++ +|||||+|.+.++|.+|+..|++..+ .++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~--i~~v~i~~~-------kg~afV~f~~~~~A~~A~~~l~g~~i----~g~ 86 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGE--PSEVFINRD-------RGFGFIRLESRTLAEIAKAELDGTIL----KSR 86 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCC--CSEEEEETT-------TTEEEEECSSHHHHHHHHHHHTTCEE----TTE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCC--EEEEEEeCC-------CcEEEEEECCHHHHHHHHHHcCCcEE----CCc
Confidence 34578999999999999999999999999 999998654 79999999999999999999999988 579
Q ss_pred ceeecccCCCCCCChhhhccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH
Q 007417 308 TVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387 (604)
Q Consensus 308 ~l~v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~ 387 (604)
.|.|.++.+ .++|||+|||..+|+++|+++|++||.|..|.|+.+ .+|+++|||||+|.+.++|.+|+
T Consensus 87 ~l~v~~a~~-----------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~ 154 (261)
T 3sde_A 87 PLRIRFATH-----------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKAL 154 (261)
T ss_dssp ECEEEECCC-----------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHH
T ss_pred eeEeeeccc-----------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHH
Confidence 999999875 368999999999999999999999999999999999 58999999999999999999999
Q ss_pred HHhcCC-eeC---CCccEEEEeeec
Q 007417 388 NAINNK-EFS---DGNSKVKLRARL 408 (604)
Q Consensus 388 ~~lng~-~~~---g~~~~v~~~~~~ 408 (604)
..||+. .+. ++.|.|.+....
T Consensus 155 ~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 155 ERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp HHHHHSCEESSSSCCBCEEEECCCE
T ss_pred HHhcCCeEEecCCCceEEEeecccc
Confidence 999554 444 899988886544
No 33
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.91 E-value=4.2e-24 Score=203.49 Aligned_cols=160 Identities=18% Similarity=0.299 Sum_probs=140.5
Q ss_pred CCcceecccCC-CCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCeecCCCCcc
Q 007417 230 NDTLFVGNICN-TWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 308 (604)
Q Consensus 230 ~~~l~v~nlp~-~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~g~~~r~ 308 (604)
+++|||+|||+ .+++++|+++|+.||. |..|.++.+. +|||||+|.+.++|.+|+..|++..+ .++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~--i~~v~i~~~~------~g~afV~f~~~~~a~~A~~~l~~~~~----~g~~ 70 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGD--VQRVKILFNK------KENALVQMADGNQAQLAMSHLNGHKL----HGKP 70 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCC--CSEEECSTTC------SSCCEEECTTTHHHHHHHHHHTTCCC----SSCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCC--EEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCee----cCeE
Confidence 57899999999 9999999999999999 9999998873 78999999999999999999999888 5799
Q ss_pred eeecccCCCCCCCh------------------------------hhhccccccccCCCCcccChhhHHhhhcccC-CEEE
Q 007417 309 VKVAFAEPLREPDP------------------------------EIMAHVKTVFLDGVPPHWKENQIRDQIKGYG-DVIR 357 (604)
Q Consensus 309 l~v~~a~~~~~~~~------------------------------~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G-~v~~ 357 (604)
|.|.++.+.....+ ......++|||+|||..+++++|+++|++|| .|..
T Consensus 71 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~ 150 (198)
T 1qm9_A 71 IRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKG 150 (198)
T ss_dssp CEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCE
T ss_pred EEEEEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceE
Confidence 99998865421110 0112367899999999999999999999999 9999
Q ss_pred EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeC-CCccEEEEee
Q 007417 358 IVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS-DGNSKVKLRA 406 (604)
Q Consensus 358 v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~-g~~~~v~~~~ 406 (604)
|.|+.+ .+|+|||+|.+.++|.+|+..|||..|. |+.|.|.++.
T Consensus 151 v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 195 (198)
T 1qm9_A 151 FKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 195 (198)
T ss_dssp EEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEEC
T ss_pred EEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeec
Confidence 999764 3789999999999999999999999999 9999999874
No 34
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.82 E-value=6.6e-20 Score=167.79 Aligned_cols=145 Identities=14% Similarity=0.205 Sum_probs=110.4
Q ss_pred EEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCeecCC---CCcceeecccC-CCCCCChhhhccccccccCCC
Q 007417 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGH---PERTVKVAFAE-PLREPDPEIMAHVKTVFLDGV 336 (604)
Q Consensus 261 ~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~g~---~~r~l~v~~a~-~~~~~~~~~~~~~~~l~v~nL 336 (604)
.++|+.+ ..+++||+||+|.+.++|++|++.+++.....+. ........... .............++|||+||
T Consensus 2 ~~kl~ln---~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl 78 (158)
T 2kn4_A 2 QYKLILN---GKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNL 78 (158)
T ss_dssp EEEEEEE---CSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESC
T ss_pred cEEEEec---CccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCC
Confidence 3566666 3368999999999999999999887643211000 01111111111 111111222344689999999
Q ss_pred CcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEeeec
Q 007417 337 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARL 408 (604)
Q Consensus 337 p~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~~~ 408 (604)
|+.+++++|+++|++||.|..|.|++++.+++++|||||+|.+.++|.+||..|||..|.|+.|.|.++...
T Consensus 79 ~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 150 (158)
T 2kn4_A 79 TYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 150 (158)
T ss_dssp CTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCS
T ss_pred CCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999987543
No 35
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.78 E-value=1.9e-19 Score=155.30 Aligned_cols=96 Identities=23% Similarity=0.420 Sum_probs=71.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCCC
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~ 228 (604)
...+|||+|||+++|+++|+++|++||.|.+|+|++++ +.++|||||+|.+.++|++||+.|++..|.|+.|.|..+.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 46789999999999999999999999999999999985 4589999999999999999999999999999999986543
Q ss_pred C--------------CCcceecccCCCCcHHH
Q 007417 229 D--------------NDTLFVGNICNTWTKEA 246 (604)
Q Consensus 229 ~--------------~~~l~v~nlp~~~te~~ 246 (604)
. .++|||+|||+.+|++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 82 SRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCCC----------------------------
T ss_pred CccccccccccccCCCCceEeCCCCCCccccc
Confidence 2 35799999999999864
No 36
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.76 E-value=9.6e-19 Score=146.33 Aligned_cols=82 Identities=22% Similarity=0.413 Sum_probs=78.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCC
Q 007417 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (604)
Q Consensus 148 ~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (604)
-..++|||+|||+++|+++|+++|++||+|.+|+|++++.|++++|||||+|.+.++|.+|++.|++..|.|+.|.|.++
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CC
Q 007417 228 ED 229 (604)
Q Consensus 228 ~~ 229 (604)
++
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 64
No 37
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.74 E-value=4.7e-18 Score=142.10 Aligned_cols=79 Identities=20% Similarity=0.389 Sum_probs=76.0
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEe
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~ 405 (604)
..++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.++++|.+|++.|||..|.|+.|.|.++
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 3578999999999999999999999999999999999999999999999999999999999999999999999999886
No 38
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.73 E-value=6.1e-18 Score=153.23 Aligned_cols=126 Identities=13% Similarity=0.172 Sum_probs=107.4
Q ss_pred CCCcccEEEEEecCHHHHHHHHHHh-CCCCeecCCCCcceeecccCCCC-----------CCChhhhccccccccCCCCc
Q 007417 271 EGLSRGFAFVMFSCHVDAMAAYKRL-QKPDVVFGHPERTVKVAFAEPLR-----------EPDPEIMAHVKTVFLDGVPP 338 (604)
Q Consensus 271 ~g~skG~afV~f~~~e~A~~Al~~l-~~~~~~~g~~~r~l~v~~a~~~~-----------~~~~~~~~~~~~l~v~nLp~ 338 (604)
....+|+++|+|.+.++|++|++.+ ++..+ .+ .+.+.++.... ..........++|||+|||+
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~----~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~ 83 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGV----DG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGN 83 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTC----CC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCS
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCC----CC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCC
Confidence 3467899999999999999999999 88777 45 78887776421 11122334568999999999
Q ss_pred ccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEee
Q 007417 339 HWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 339 ~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
.+|+++|+++|++||.|..|.|+++ ++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 84 ~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 146 (150)
T 2i2y_A 84 NGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSN 146 (150)
T ss_dssp CCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECC
T ss_pred CCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcC
Confidence 9999999999999999999999876 58999999999999999999999999999999998863
No 39
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.73 E-value=9.7e-18 Score=152.94 Aligned_cols=81 Identities=16% Similarity=0.270 Sum_probs=77.4
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEee
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
..++|||+|||+.+|+++|+++|++||.|..|.|+.++.++.++|||||+|.++++|.+||..||+..|.|+.|.|.++.
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 117 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDA 117 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999884
Q ss_pred e
Q 007417 407 R 407 (604)
Q Consensus 407 ~ 407 (604)
.
T Consensus 118 ~ 118 (156)
T 1h2v_Z 118 G 118 (156)
T ss_dssp C
T ss_pred C
Confidence 3
No 40
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.72 E-value=3.9e-18 Score=180.71 Aligned_cols=81 Identities=20% Similarity=0.362 Sum_probs=77.0
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEee
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
..++|||+|||+.+|+++|+++|++||.|+.|.|+.+..++.++|||||+|.+.++|.+||..|||..|.|+.|.|.++.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred e
Q 007417 407 R 407 (604)
Q Consensus 407 ~ 407 (604)
.
T Consensus 181 ~ 181 (437)
T 3pgw_S 181 G 181 (437)
T ss_pred C
Confidence 3
No 41
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.72 E-value=1.5e-17 Score=141.72 Aligned_cols=82 Identities=18% Similarity=0.233 Sum_probs=77.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCC
Q 007417 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (604)
Q Consensus 148 ~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (604)
.+.++|||+|||+++|+++|+++|++||.|.+|+|++++.|++++|||||+|.+.++|++|++.||+..|.|+.|.|..+
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred CC
Q 007417 228 ED 229 (604)
Q Consensus 228 ~~ 229 (604)
..
T Consensus 84 ~~ 85 (110)
T 3s8s_A 84 IK 85 (110)
T ss_dssp ST
T ss_pred CC
Confidence 53
No 42
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.72 E-value=2.8e-18 Score=141.17 Aligned_cols=82 Identities=27% Similarity=0.448 Sum_probs=75.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccC-CeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcC-CCeeeCcccccCCC
Q 007417 150 EHEIFIGGLDRDATQEDVRKVFERIG-EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMK-NPVICGKRCGTAPS 227 (604)
Q Consensus 150 ~~~vfV~nLp~~~te~dL~~~F~~~G-~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~-~~~l~g~~i~v~~~ 227 (604)
+++|||+|||+++|+++|+++|++|| +|.+|+|++++.|++++|||||+|.+.++|.+|++.++ +..|.|++|.|..+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 47999999999999999999999999 89999999999999999999999999999999999875 45799999999887
Q ss_pred CCCC
Q 007417 228 EDND 231 (604)
Q Consensus 228 ~~~~ 231 (604)
.+..
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 6543
No 43
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.71 E-value=2.1e-18 Score=167.12 Aligned_cols=82 Identities=10% Similarity=0.287 Sum_probs=76.6
Q ss_pred cccccccCCCCcccChhhHHhhhcccC--CEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEE
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYG--DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G--~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~ 404 (604)
..++|||+|||+.+|+++|+++|++|| .|..|+|++++.+++++|||||+|.+.++|.+||..||+..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 346899999999999999999999999 999999999999999999999999999999999999999999999999998
Q ss_pred eeec
Q 007417 405 RARL 408 (604)
Q Consensus 405 ~~~~ 408 (604)
+...
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 7543
No 44
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.71 E-value=1.7e-17 Score=151.60 Aligned_cols=133 Identities=23% Similarity=0.266 Sum_probs=108.5
Q ss_pred EEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCC-------eeeCcccc------------cCCCCCCCcceecccC
Q 007417 179 EVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNP-------VICGKRCG------------TAPSEDNDTLFVGNIC 239 (604)
Q Consensus 179 ~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~-------~l~g~~i~------------v~~~~~~~~l~v~nlp 239 (604)
.++|+.+.. +++|||||+|.+.++|++|+..+++. .+.+.... ........+|||+|||
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 466777643 68999999999999999999876531 12222111 1122346899999999
Q ss_pred CCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCeecCCCCcceeecccCCCCC
Q 007417 240 NTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLRE 319 (604)
Q Consensus 240 ~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~g~~~r~l~v~~a~~~~~ 319 (604)
+.+|+++|+++|+.||. |..|.|+.++ .+++++|||||+|.+.++|.+|+..|++..+ .++.|.|.++.+...
T Consensus 80 ~~~~~~~l~~~F~~~G~--v~~~~i~~~~-~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~----~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYGR--VGDVYIPRDR-YTKESRGFAFVRFHDKRDAEDAMDAMDGAVL----DGRELRVQMARYGRP 152 (158)
T ss_dssp TTCCHHHHHHHHHHHSC--EEEEECCCCS-SCTTSCCEEEEEESBHHHHHHHHHHSTTEES----SSSEEEEEEECCSSC
T ss_pred CCCCHHHHHHHHHhcCC--eEEEEEeecC-CCCccceEEEEEECCHHHHHHHHHHhCCCEE----CCeEEEEEECCCCCC
Confidence 99999999999999999 9999999884 5899999999999999999999999999877 579999999987654
Q ss_pred C
Q 007417 320 P 320 (604)
Q Consensus 320 ~ 320 (604)
.
T Consensus 153 ~ 153 (158)
T 2kn4_A 153 P 153 (158)
T ss_dssp C
T ss_pred C
Confidence 3
No 45
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.70 E-value=7.3e-18 Score=139.39 Aligned_cols=82 Identities=21% Similarity=0.353 Sum_probs=75.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCC--eEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCC----eeeCcc
Q 007417 148 KKEHEIFIGGLDRDATQEDVRKVFERIGE--VIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNP----VICGKR 221 (604)
Q Consensus 148 ~~~~~vfV~nLp~~~te~dL~~~F~~~G~--V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~----~l~g~~ 221 (604)
..-.||||+|||+++|+++|+++|++||. |.+|+|++|+.|++++|||||+|.+.++|.+|++.|++. .|.|++
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 45689999999999999999999999995 679999999999999999999999999999999999886 589999
Q ss_pred cccCCCCC
Q 007417 222 CGTAPSED 229 (604)
Q Consensus 222 i~v~~~~~ 229 (604)
|.|..+++
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99887764
No 46
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.69 E-value=4.2e-17 Score=139.03 Aligned_cols=78 Identities=15% Similarity=0.229 Sum_probs=75.8
Q ss_pred ccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEe
Q 007417 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (604)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~ 405 (604)
.++|||+|||+.+++++|+++|++||.|..|.|++++.|++++|||||+|.+.++|.+||+.|||..|.|+.|.|.++
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 478999999999999999999999999999999999999999999999999999999999999999999999999886
No 47
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.68 E-value=5.6e-17 Score=134.96 Aligned_cols=88 Identities=23% Similarity=0.407 Sum_probs=81.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCCC
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~ 228 (604)
++++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+|++.|++..|.|+.|.|..+.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCCcceec
Q 007417 229 DNDTLFVG 236 (604)
Q Consensus 229 ~~~~l~v~ 236 (604)
+.......
T Consensus 81 ~~~~~~~~ 88 (96)
T 2x1f_A 81 NSDISGVS 88 (96)
T ss_dssp CSSGGGHH
T ss_pred CCCCCCcc
Confidence 76655443
No 48
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.68 E-value=4.1e-17 Score=140.66 Aligned_cols=104 Identities=17% Similarity=0.308 Sum_probs=94.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCC
Q 007417 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (604)
Q Consensus 148 ~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (604)
...++|||+|||+++|+++|+++|++||.|..|+|+++ +.++|||||+|.+.++|.+|+..|++..|.|+.|.|..+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 36789999999999999999999999999999999876 566999999999999999999999999999999999888
Q ss_pred CCCCcceecccCCCCcHHHHHHHHHhcCC
Q 007417 228 EDNDTLFVGNICNTWTKEAIKQKLKDYGV 256 (604)
Q Consensus 228 ~~~~~l~v~nlp~~~te~~l~~~f~~~G~ 256 (604)
.+.... .+++...++++|.++|++||.
T Consensus 83 ~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 83 NANRAF--QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CHHHHT--TTSCHHHHHHHHHHHHHHHCC
T ss_pred cCChhh--hhhhHhHhHHHHHHHHHHhCC
Confidence 754332 678888899999999999984
No 49
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.68 E-value=7.7e-17 Score=138.85 Aligned_cols=106 Identities=20% Similarity=0.341 Sum_probs=74.3
Q ss_pred CCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCeecCCCCcce
Q 007417 230 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTV 309 (604)
Q Consensus 230 ~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~g~~~r~l 309 (604)
.++|||+|||+.+|+++|+++|+.||. |.+|+|+++ .+.++|||||+|.+.++|.+|++.|++..+ .++.|
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~--v~~v~i~~d---~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~----~g~~i 75 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGN--ILSCKVVCD---ENGSKGYGFVHFETQEAAERAIEKMNGMLL----NDRKV 75 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSC--EEEEEEEEE---TTEEEEEEEEEESCHHHHHHHHHHHTTCEE----TTEEC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCC--EEEEEEeec---CCCCCceEEEEECCHHHHHHHHHHcCCCEE----CCEEE
Confidence 568999999999999999999999999 999999987 356899999999999999999999999988 67999
Q ss_pred eecccCCCCCCChh---hhccccccccCCCCcccChhh
Q 007417 310 KVAFAEPLREPDPE---IMAHVKTVFLDGVPPHWKENQ 344 (604)
Q Consensus 310 ~v~~a~~~~~~~~~---~~~~~~~l~v~nLp~~~t~~~ 344 (604)
.|.++.+....... .....++|||+|||+.+|++.
T Consensus 76 ~V~~a~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 76 FVGRFKSRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp EEEESSCCCC----------------------------
T ss_pred EEEECCCccccccccccccCCCCceEeCCCCCCccccc
Confidence 99999876543322 222346799999999998763
No 50
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.68 E-value=2.6e-17 Score=135.21 Aligned_cols=79 Identities=22% Similarity=0.466 Sum_probs=72.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccC--CeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCCC
Q 007417 151 HEIFIGGLDRDATQEDVRKVFERIG--EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (604)
Q Consensus 151 ~~vfV~nLp~~~te~dL~~~F~~~G--~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~ 228 (604)
.+|||+|||+++|+++|+++|++|| .|.+|+|+.++.+|+++|||||+|.+.++|.+|++.|++..|.|+.|.|..+.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5899999999999999999999999 99999999999999999999999999999999999999999999999998876
Q ss_pred C
Q 007417 229 D 229 (604)
Q Consensus 229 ~ 229 (604)
+
T Consensus 82 ~ 82 (90)
T 3p5t_L 82 K 82 (90)
T ss_dssp -
T ss_pred C
Confidence 5
No 51
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.67 E-value=1.2e-16 Score=129.03 Aligned_cols=81 Identities=20% Similarity=0.427 Sum_probs=76.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCCCC
Q 007417 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSED 229 (604)
Q Consensus 150 ~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~~ 229 (604)
..+|||+|||+++|+++|+++|++||.|..|++++++.+++++|||||+|.+.++|.+|+..|++..|.|+.|.|..+.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999987765
Q ss_pred C
Q 007417 230 N 230 (604)
Q Consensus 230 ~ 230 (604)
.
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 3
No 52
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.67 E-value=2.9e-17 Score=145.67 Aligned_cols=122 Identities=13% Similarity=0.215 Sum_probs=80.5
Q ss_pred EEEEEecCHHHHHHHHHHhCCCCeecCCCCcceeecccCCCCCCChhhhccccccccCCCCcccChhhHHhhhcccCCEE
Q 007417 277 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVI 356 (604)
Q Consensus 277 ~afV~f~~~e~A~~Al~~l~~~~~~~g~~~r~l~v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~ 356 (604)
+.|++|.+...+..|+..+++.... ++ ....+..+. ......++|||+|||+.+|+++|+++|++||.|.
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~----g~-~~~~~~~~~-----~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~ 75 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQM----GR-GSMSYGRPP-----PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVG 75 (135)
T ss_dssp ----------------------------------CCSCCSC-----SSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCS
T ss_pred cccccccCCCchhhhhhhccCCCCC----CC-CCCCcCCCC-----CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE
Confidence 5788888888889999888876542 11 122222221 2223467999999999999999999999999999
Q ss_pred EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEeeec
Q 007417 357 RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARL 408 (604)
Q Consensus 357 ~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~~~ 408 (604)
.|.|+.++.+++++|||||+|.+.++|.+||..||+..|.|+.|.|.++...
T Consensus 76 ~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~ 127 (135)
T 2lea_A 76 DVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 127 (135)
T ss_dssp EEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCC
T ss_pred EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 9999999989999999999999999999999999999999999999987543
No 53
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1.5e-16 Score=131.98 Aligned_cols=82 Identities=27% Similarity=0.542 Sum_probs=78.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCC
Q 007417 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (604)
Q Consensus 148 ~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (604)
...++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|+..|++..|.|+.|.|..+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred CC
Q 007417 228 ED 229 (604)
Q Consensus 228 ~~ 229 (604)
..
T Consensus 83 ~~ 84 (95)
T 2dnz_A 83 TE 84 (95)
T ss_dssp SC
T ss_pred cc
Confidence 54
No 54
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.67 E-value=9.2e-17 Score=130.35 Aligned_cols=80 Identities=20% Similarity=0.525 Sum_probs=76.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCC
Q 007417 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (604)
Q Consensus 148 ~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (604)
.+.++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|++.|++..|.|+.|+|..+
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999988765
No 55
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.67 E-value=8.5e-17 Score=141.06 Aligned_cols=82 Identities=22% Similarity=0.330 Sum_probs=77.8
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEee
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
..++|||+|||+.+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++.
T Consensus 21 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 100 (126)
T 3ex7_B 21 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCF 100 (126)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEec
Confidence 45799999999999999999999999999999999999899999999999999999999999999999999999999875
Q ss_pred ec
Q 007417 407 RL 408 (604)
Q Consensus 407 ~~ 408 (604)
..
T Consensus 101 ~~ 102 (126)
T 3ex7_B 101 VR 102 (126)
T ss_dssp ES
T ss_pred CC
Confidence 54
No 56
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.67 E-value=9.9e-17 Score=130.77 Aligned_cols=81 Identities=27% Similarity=0.508 Sum_probs=76.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCCC
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~ 228 (604)
+.++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|+..|++..|.|+.|.|..+.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999987764
Q ss_pred C
Q 007417 229 D 229 (604)
Q Consensus 229 ~ 229 (604)
.
T Consensus 85 ~ 85 (87)
T 3bs9_A 85 R 85 (87)
T ss_dssp -
T ss_pred C
Confidence 3
No 57
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.67 E-value=2e-17 Score=136.72 Aligned_cols=80 Identities=19% Similarity=0.368 Sum_probs=74.2
Q ss_pred cccccccCCCCcccChhhHHhhhcccCC--EEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCC----eeCCCcc
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGD--VIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK----EFSDGNS 400 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~--v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~----~~~g~~~ 400 (604)
..++|||+|||+.+|+++|+++|++||. |..|+|++|+.+++++|||||+|.++++|.+|++.||+. .|.|+.|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 3578999999999999999999999995 678999999999999999999999999999999999997 4899999
Q ss_pred EEEEee
Q 007417 401 KVKLRA 406 (604)
Q Consensus 401 ~v~~~~ 406 (604)
.|.++.
T Consensus 88 ~V~~Ak 93 (95)
T 2lkz_A 88 GVDFAK 93 (95)
T ss_dssp EEEECC
T ss_pred EEEEcc
Confidence 998864
No 58
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.6e-16 Score=137.21 Aligned_cols=81 Identities=23% Similarity=0.433 Sum_probs=76.1
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEee
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
..++|||+|||+.+++++|+++|++||.|..|.|++++.+++++|||||+|.+.++|.+||..||+ .|.|+.|.|.++.
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~ 94 (116)
T 2cqd_A 16 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLAY 94 (116)
T ss_dssp SSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEEST
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEcc
Confidence 457999999999999999999999999999999999999999999999999999999999999998 8999999998875
Q ss_pred ec
Q 007417 407 RL 408 (604)
Q Consensus 407 ~~ 408 (604)
..
T Consensus 95 ~~ 96 (116)
T 2cqd_A 95 LG 96 (116)
T ss_dssp TT
T ss_pred cC
Confidence 44
No 59
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=9.5e-17 Score=135.42 Aligned_cols=85 Identities=21% Similarity=0.362 Sum_probs=79.4
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccC
Q 007417 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (604)
Q Consensus 146 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (604)
.....++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|+..|++..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34468999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCC
Q 007417 226 PSEDN 230 (604)
Q Consensus 226 ~~~~~ 230 (604)
.+...
T Consensus 91 ~a~~~ 95 (103)
T 2cq0_A 91 WAKPS 95 (103)
T ss_dssp ESSCC
T ss_pred ECCCC
Confidence 77553
No 60
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.2e-16 Score=133.64 Aligned_cols=85 Identities=28% Similarity=0.446 Sum_probs=79.5
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCC
Q 007417 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (604)
Q Consensus 147 ~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (604)
..+.++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|+..|++..|.|+.|.|..
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34679999999999999999999999999999999999998999999999999999999999999999999999999987
Q ss_pred CCCCC
Q 007417 227 SEDND 231 (604)
Q Consensus 227 ~~~~~ 231 (604)
+....
T Consensus 85 a~~~~ 89 (99)
T 1whw_A 85 STIKK 89 (99)
T ss_dssp CCCCS
T ss_pred cCCCc
Confidence 76543
No 61
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=1e-16 Score=135.23 Aligned_cols=84 Identities=21% Similarity=0.398 Sum_probs=79.0
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccC
Q 007417 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (604)
Q Consensus 146 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (604)
.....++|||+|||+++|+++|+++|++||.|..|.|+.++.|++++|||||+|.+.++|.+|+..|++..|.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34468999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCC
Q 007417 226 PSED 229 (604)
Q Consensus 226 ~~~~ 229 (604)
.+..
T Consensus 89 ~a~~ 92 (103)
T 2dnm_A 89 VARY 92 (103)
T ss_dssp ECSS
T ss_pred ECCc
Confidence 7764
No 62
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.5e-16 Score=134.71 Aligned_cols=85 Identities=24% Similarity=0.467 Sum_probs=79.7
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccC
Q 007417 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (604)
Q Consensus 146 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (604)
.....++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|+..|++..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34567999999999999999999999999999999999999899999999999999999999999999999999999998
Q ss_pred CCCCC
Q 007417 226 PSEDN 230 (604)
Q Consensus 226 ~~~~~ 230 (604)
.+...
T Consensus 91 ~a~~~ 95 (105)
T 1x5u_A 91 KASAH 95 (105)
T ss_dssp ETTTT
T ss_pred ECCCC
Confidence 87654
No 63
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.66 E-value=1.2e-17 Score=137.30 Aligned_cols=78 Identities=22% Similarity=0.373 Sum_probs=72.3
Q ss_pred cccccCCCCcccChhhHHhhhcccC-CEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhc-CCeeCCCccEEEEee
Q 007417 329 KTVFLDGVPPHWKENQIRDQIKGYG-DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN-NKEFSDGNSKVKLRA 406 (604)
Q Consensus 329 ~~l~v~nLp~~~t~~~l~~~F~~~G-~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~ln-g~~~~g~~~~v~~~~ 406 (604)
++|||+|||+.+|+++|+++|++|| .|..|+|++++.++.++|||||+|.++++|.+||+.|+ +..|.|+.|.|.++.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 6899999999999999999999999 89999999999999999999999999999999999874 567999998887754
No 64
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.66 E-value=4.1e-17 Score=134.04 Aligned_cols=80 Identities=11% Similarity=0.331 Sum_probs=72.1
Q ss_pred cccccCCCCcccChhhHHhhhcccC--CEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEee
Q 007417 329 KTVFLDGVPPHWKENQIRDQIKGYG--DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 329 ~~l~v~nLp~~~t~~~l~~~F~~~G--~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
.+|||+|||+.+|+++|+++|++|| .|..|.|+.++.+|+++|||||+|.+.++|.+|++.|||..|.|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999999999999999999988765
Q ss_pred ec
Q 007417 407 RL 408 (604)
Q Consensus 407 ~~ 408 (604)
..
T Consensus 82 ~~ 83 (90)
T 3p5t_L 82 KL 83 (90)
T ss_dssp --
T ss_pred CC
Confidence 44
No 65
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=2.2e-16 Score=132.09 Aligned_cols=83 Identities=25% Similarity=0.526 Sum_probs=77.7
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCC
Q 007417 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (604)
Q Consensus 147 ~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (604)
....++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|++ |++..|.|+.|.|..
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 3467999999999999999999999999999999999999999999999999999999999998 999999999999887
Q ss_pred CCCC
Q 007417 227 SEDN 230 (604)
Q Consensus 227 ~~~~ 230 (604)
+...
T Consensus 86 a~~~ 89 (99)
T 2dgs_A 86 AEPR 89 (99)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 66
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=3.1e-16 Score=130.15 Aligned_cols=79 Identities=24% Similarity=0.420 Sum_probs=76.0
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEe
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~ 405 (604)
..++|||+|||..+++++|+++|++||.|..|.|++++.+++++|||||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 3579999999999999999999999999999999999999999999999999999999999999999999999999886
No 67
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.66 E-value=2.1e-16 Score=136.21 Aligned_cols=84 Identities=29% Similarity=0.540 Sum_probs=79.0
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccC
Q 007417 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (604)
Q Consensus 146 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (604)
.....++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|++||..|++..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34568999999999999999999999999999999999999899999999999999999999999999999999999998
Q ss_pred CCCC
Q 007417 226 PSED 229 (604)
Q Consensus 226 ~~~~ 229 (604)
++..
T Consensus 91 ~a~~ 94 (115)
T 2dgo_A 91 WATR 94 (115)
T ss_dssp ESSC
T ss_pred EccC
Confidence 7754
No 68
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.4e-16 Score=132.29 Aligned_cols=83 Identities=25% Similarity=0.395 Sum_probs=78.2
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCC
Q 007417 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (604)
Q Consensus 147 ~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (604)
....++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|+..|++..|.|+.|.|..
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCC
Q 007417 227 SED 229 (604)
Q Consensus 227 ~~~ 229 (604)
+..
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 653
No 69
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.66 E-value=4.6e-17 Score=136.48 Aligned_cols=80 Identities=16% Similarity=0.305 Sum_probs=75.9
Q ss_pred CCCEEEEcCCCC------CCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeC-cc
Q 007417 149 KEHEIFIGGLDR------DATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICG-KR 221 (604)
Q Consensus 149 ~~~~vfV~nLp~------~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g-~~ 221 (604)
.+++|||+|||+ ++++++|+++|++||.|.+|+|++++.|++++|||||+|.+.++|.+|++.|++..|.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 468999999999 99999999999999999999999999999999999999999999999999999999999 99
Q ss_pred cccCCCC
Q 007417 222 CGTAPSE 228 (604)
Q Consensus 222 i~v~~~~ 228 (604)
|.|..+.
T Consensus 85 l~V~~a~ 91 (100)
T 3ns6_A 85 LFLYTMK 91 (100)
T ss_dssp CEEEESH
T ss_pred EEEEECc
Confidence 9887654
No 70
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.3e-16 Score=134.19 Aligned_cols=79 Identities=23% Similarity=0.341 Sum_probs=73.2
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCC
Q 007417 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (604)
Q Consensus 147 ~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (604)
....++|||+|||+++|+++|+++|++||+|.+|+|++++. ++++|||||+|.+.++|.+||. +++..|.|+.|.|.+
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999987 9999999999999999999999 899999999988765
Q ss_pred C
Q 007417 227 S 227 (604)
Q Consensus 227 ~ 227 (604)
+
T Consensus 86 ~ 86 (103)
T 1s79_A 86 K 86 (103)
T ss_dssp H
T ss_pred c
Confidence 3
No 71
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=1.8e-16 Score=131.35 Aligned_cols=81 Identities=22% Similarity=0.463 Sum_probs=76.7
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCC
Q 007417 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (604)
Q Consensus 147 ~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (604)
....++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|++.|++..|.|+.|.|..
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred C
Q 007417 227 S 227 (604)
Q Consensus 227 ~ 227 (604)
+
T Consensus 93 a 93 (94)
T 2e5h_A 93 A 93 (94)
T ss_dssp C
T ss_pred c
Confidence 5
No 72
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.65 E-value=6.9e-16 Score=132.92 Aligned_cols=82 Identities=20% Similarity=0.374 Sum_probs=77.6
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEee
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
..++|||+|||+.+++++|+++|++||.|..|.|++++.++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (115)
T 2dgo_A 14 NHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 93 (115)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 45799999999999999999999999999999999998899999999999999999999999999999999999998875
Q ss_pred ec
Q 007417 407 RL 408 (604)
Q Consensus 407 ~~ 408 (604)
..
T Consensus 94 ~~ 95 (115)
T 2dgo_A 94 RK 95 (115)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 73
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.65 E-value=1.8e-16 Score=145.87 Aligned_cols=127 Identities=20% Similarity=0.265 Sum_probs=78.7
Q ss_pred EEecCHHHHHHHHHHhCCCCeecCCCCcceeecccCCC---------------CCCChhhhccccccccCCCCcccChhh
Q 007417 280 VMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPL---------------REPDPEIMAHVKTVFLDGVPPHWKENQ 344 (604)
Q Consensus 280 V~f~~~e~A~~Al~~l~~~~~~~g~~~r~l~v~~a~~~---------------~~~~~~~~~~~~~l~v~nLp~~~t~~~ 344 (604)
.+|.+.++|..++..|+.....- .++.+...+.... ....+......++|||+|||+.+++++
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~--kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~ 88 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHR--KGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDE 88 (165)
T ss_dssp ---------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHH
T ss_pred hhhhccccccccchhhccccccc--cCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHH
Confidence 67888888888888777655421 1233333321110 111122233457899999999999999
Q ss_pred HHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEeeec
Q 007417 345 IRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARL 408 (604)
Q Consensus 345 l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~~~ 408 (604)
|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++...
T Consensus 89 L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 152 (165)
T 1rk8_A 89 IQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVK 152 (165)
T ss_dssp HHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEEC
T ss_pred HHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence 9999999999999999999999999999999999999999999999999999999999987554
No 74
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.65 E-value=2.7e-16 Score=128.80 Aligned_cols=80 Identities=24% Similarity=0.503 Sum_probs=76.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCCC
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~ 228 (604)
+.++|||+|||+++|+++|+++|++||.|..|+++.++.+++++|||||+|.+.++|.+|+ .|++..|.|+.|.|.++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3589999999999999999999999999999999999999999999999999999999999 899999999999998876
Q ss_pred C
Q 007417 229 D 229 (604)
Q Consensus 229 ~ 229 (604)
.
T Consensus 84 ~ 84 (89)
T 3ucg_A 84 T 84 (89)
T ss_dssp T
T ss_pred C
Confidence 5
No 75
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.65 E-value=3.1e-16 Score=126.56 Aligned_cols=79 Identities=14% Similarity=0.411 Sum_probs=75.6
Q ss_pred cccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEeee
Q 007417 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407 (604)
Q Consensus 329 ~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~~ 407 (604)
.+|||+|||..+++++|+++|++||.|..+.|++++.+++++|||||+|.+.++|.+|+..|||..|.|+.|.|.++..
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999988743
No 76
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.65 E-value=2.8e-16 Score=128.02 Aligned_cols=81 Identities=20% Similarity=0.359 Sum_probs=76.1
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEee
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
..++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.++.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 45799999999999999999999999999999999998899999999999999999999999999999999999998874
Q ss_pred e
Q 007417 407 R 407 (604)
Q Consensus 407 ~ 407 (604)
.
T Consensus 85 ~ 85 (87)
T 3bs9_A 85 R 85 (87)
T ss_dssp -
T ss_pred C
Confidence 3
No 77
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.65 E-value=1.7e-16 Score=136.71 Aligned_cols=83 Identities=23% Similarity=0.336 Sum_probs=78.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCC
Q 007417 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (604)
Q Consensus 148 ~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (604)
...++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||..|++..|.|+.|.|..+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 46789999999999999999999999999999999999989999999999999999999999999999999999999887
Q ss_pred CCC
Q 007417 228 EDN 230 (604)
Q Consensus 228 ~~~ 230 (604)
...
T Consensus 103 ~~~ 105 (115)
T 2cpz_A 103 RSK 105 (115)
T ss_dssp CCS
T ss_pred CCC
Confidence 653
No 78
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=2.7e-16 Score=131.53 Aligned_cols=82 Identities=17% Similarity=0.243 Sum_probs=77.0
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEee
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
..++|||+|||+.+++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|.+|+..||+..|.|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 86 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPST 86 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 35799999999999999999999999999999999998899999999999999999999999999999999999998864
Q ss_pred ec
Q 007417 407 RL 408 (604)
Q Consensus 407 ~~ 408 (604)
..
T Consensus 87 ~~ 88 (99)
T 1whw_A 87 IK 88 (99)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 79
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.65 E-value=1.1e-16 Score=154.93 Aligned_cols=80 Identities=21% Similarity=0.460 Sum_probs=74.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccC--CeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCC
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFERIG--EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~~G--~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (604)
..++|||+|||+++|+++|+++|++|| .|++|+|++++.|++++|||||+|.+.++|.+||+.|++..|.|+.|.|..
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 578999999999999999999999999 999999999999999999999999999999999999999999999887665
Q ss_pred CC
Q 007417 227 SE 228 (604)
Q Consensus 227 ~~ 228 (604)
+.
T Consensus 147 a~ 148 (229)
T 3q2s_C 147 VN 148 (229)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 80
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.1e-16 Score=132.21 Aligned_cols=81 Identities=20% Similarity=0.373 Sum_probs=76.8
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEee
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
..++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 93 (103)
T 2cq0_A 14 DNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAK 93 (103)
T ss_dssp SSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECC
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999998864
Q ss_pred e
Q 007417 407 R 407 (604)
Q Consensus 407 ~ 407 (604)
.
T Consensus 94 ~ 94 (103)
T 2cq0_A 94 P 94 (103)
T ss_dssp C
T ss_pred C
Confidence 3
No 81
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=1.9e-16 Score=132.19 Aligned_cols=83 Identities=23% Similarity=0.445 Sum_probs=77.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCC---CCCCcceEEEEEeehHHHHHHHHhcCCCeeeCccccc
Q 007417 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFS---TNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (604)
Q Consensus 148 ~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~---tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v 224 (604)
.+.++|||+|||+++|+++|+++|++||.|..|+|++++. |++++|||||+|.+.++|.+|+..|++..|.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3678999999999999999999999999999999999877 6799999999999999999999999999999999999
Q ss_pred CCCCCC
Q 007417 225 APSEDN 230 (604)
Q Consensus 225 ~~~~~~ 230 (604)
..+...
T Consensus 83 ~~a~~~ 88 (98)
T 2cpf_A 83 RISERA 88 (98)
T ss_dssp ECSSCS
T ss_pred EEccCC
Confidence 887653
No 82
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.65 E-value=2.4e-16 Score=128.45 Aligned_cols=80 Identities=23% Similarity=0.543 Sum_probs=74.0
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccC
Q 007417 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (604)
Q Consensus 146 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (604)
.....++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|++ +++..|.|+.|.|.
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 44578999999999999999999999999999999999999999999999999999999999997 47788999998875
Q ss_pred C
Q 007417 226 P 226 (604)
Q Consensus 226 ~ 226 (604)
.
T Consensus 86 ~ 86 (87)
T 3s7r_A 86 K 86 (87)
T ss_dssp E
T ss_pred e
Confidence 4
No 83
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.4e-16 Score=129.24 Aligned_cols=81 Identities=23% Similarity=0.434 Sum_probs=76.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCC
Q 007417 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (604)
Q Consensus 148 ~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (604)
...++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+|+..|++..|.|+.|++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred C
Q 007417 228 E 228 (604)
Q Consensus 228 ~ 228 (604)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 84
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=3.6e-16 Score=132.06 Aligned_cols=83 Identities=27% Similarity=0.357 Sum_probs=78.1
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhc-cCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCe-eeCcccc
Q 007417 146 KIKKEHEIFIGGLDRDATQEDVRKVFER-IGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPV-ICGKRCG 223 (604)
Q Consensus 146 ~~~~~~~vfV~nLp~~~te~dL~~~F~~-~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~-l~g~~i~ 223 (604)
.....++|||+|||+++|+++|+++|++ ||.|..|+|++++ +++++|||||+|.+.++|.+|+..|++.. |.|+.|.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 3456799999999999999999999999 9999999999998 99999999999999999999999999999 9999999
Q ss_pred cCCCCC
Q 007417 224 TAPSED 229 (604)
Q Consensus 224 v~~~~~ 229 (604)
|..+..
T Consensus 84 v~~a~~ 89 (104)
T 2dhg_A 84 LSVAIP 89 (104)
T ss_dssp CCBCCC
T ss_pred EEEccC
Confidence 988754
No 85
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=4.9e-16 Score=129.98 Aligned_cols=80 Identities=20% Similarity=0.476 Sum_probs=75.7
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEee
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
..++|||+|||+.+++++|+++|++||.|..|.|++++.+++++|||||+|.+.++|.+||+ ||+..|.|+.|.|.++.
T Consensus 9 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~ 87 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAE 87 (99)
T ss_dssp SCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEECC
Confidence 35799999999999999999999999999999999999999999999999999999999998 99999999999998864
Q ss_pred e
Q 007417 407 R 407 (604)
Q Consensus 407 ~ 407 (604)
.
T Consensus 88 ~ 88 (99)
T 2dgs_A 88 P 88 (99)
T ss_dssp C
T ss_pred C
Confidence 3
No 86
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.6e-16 Score=132.11 Aligned_cols=82 Identities=23% Similarity=0.485 Sum_probs=77.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEE-EEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCC
Q 007417 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEV-RLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (604)
Q Consensus 148 ~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v-~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (604)
...++|||+|||+++|+++|+++|++||.|..| +|++++.+++++|||||+|.+.++|.+|+..|++..|.|+.|.|..
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 367999999999999999999999999999999 9999999999999999999999999999999999999999999887
Q ss_pred CCC
Q 007417 227 SED 229 (604)
Q Consensus 227 ~~~ 229 (604)
+..
T Consensus 83 a~~ 85 (96)
T 1x5t_A 83 AFK 85 (96)
T ss_dssp SCC
T ss_pred ecc
Confidence 654
No 87
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.65 E-value=4.3e-16 Score=134.29 Aligned_cols=79 Identities=19% Similarity=0.362 Sum_probs=75.2
Q ss_pred ccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEeee
Q 007417 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407 (604)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~~ 407 (604)
.++|||+|||+.+++++|+++|++||.|..|.|+.+. +++++|||||+|.+.++|.+|+..||+..|.|+.|.|.++..
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 85 (116)
T 2fy1_A 7 PGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKK 85 (116)
T ss_dssp CCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 4799999999999999999999999999999999997 899999999999999999999999999999999999988743
No 88
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.65 E-value=2.4e-16 Score=134.03 Aligned_cols=84 Identities=25% Similarity=0.506 Sum_probs=79.1
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCC
Q 007417 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (604)
Q Consensus 147 ~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (604)
....++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|++.|++..|.|+.|.|..
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 44679999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCC
Q 007417 227 SEDN 230 (604)
Q Consensus 227 ~~~~ 230 (604)
+.+.
T Consensus 103 a~~k 106 (108)
T 2jrs_A 103 VTER 106 (108)
T ss_dssp SCSS
T ss_pred cccC
Confidence 7653
No 89
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=2.4e-16 Score=132.17 Aligned_cols=83 Identities=28% Similarity=0.442 Sum_probs=77.6
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCC
Q 007417 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (604)
Q Consensus 147 ~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (604)
....++|||+|||+++|+++|+++|++||.|..|+|+.++ +++++|||||+|.+.++|.+|+..|++..|.|+.|.|..
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4467999999999999999999999999999999999997 899999999999999999999999999999999999887
Q ss_pred CCCC
Q 007417 227 SEDN 230 (604)
Q Consensus 227 ~~~~ 230 (604)
+.+.
T Consensus 93 a~~~ 96 (100)
T 2do4_A 93 SNSG 96 (100)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 90
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=2.7e-16 Score=134.52 Aligned_cols=83 Identities=23% Similarity=0.400 Sum_probs=78.6
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcC------CCeeeCc
Q 007417 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMK------NPVICGK 220 (604)
Q Consensus 147 ~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~------~~~l~g~ 220 (604)
....++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|+..|+ +..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 4468899999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred ccccCCCCC
Q 007417 221 RCGTAPSED 229 (604)
Q Consensus 221 ~i~v~~~~~ 229 (604)
.|.|..+.+
T Consensus 92 ~l~v~~a~~ 100 (111)
T 1x4h_A 92 QLKVDLAVT 100 (111)
T ss_dssp EEEEECCCC
T ss_pred EEEEEECCC
Confidence 999987765
No 91
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.65 E-value=2.9e-16 Score=135.92 Aligned_cols=81 Identities=25% Similarity=0.334 Sum_probs=76.7
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCC
Q 007417 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (604)
Q Consensus 147 ~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (604)
....++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|++.|++..|.|+.|+|..
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred C
Q 007417 227 S 227 (604)
Q Consensus 227 ~ 227 (604)
+
T Consensus 117 a 117 (118)
T 2khc_A 117 K 117 (118)
T ss_dssp C
T ss_pred c
Confidence 4
No 92
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=3.2e-16 Score=131.11 Aligned_cols=82 Identities=21% Similarity=0.385 Sum_probs=77.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeE-EEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcc----c
Q 007417 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVI-EVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKR----C 222 (604)
Q Consensus 148 ~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~-~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~----i 222 (604)
...++|||+|||+++|+++|+++|++||.|. .|+|++++.+++++|||||+|.+.++|++|+..|++..|.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4679999999999999999999999999999 9999999999999999999999999999999999999999999 8
Q ss_pred ccCCCCC
Q 007417 223 GTAPSED 229 (604)
Q Consensus 223 ~v~~~~~ 229 (604)
+|.++..
T Consensus 87 ~v~~a~~ 93 (99)
T 2div_A 87 KLNYATY 93 (99)
T ss_dssp CEEETTC
T ss_pred EEeecCC
Confidence 8877654
No 93
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.65 E-value=1.6e-16 Score=133.18 Aligned_cols=80 Identities=14% Similarity=0.210 Sum_probs=76.2
Q ss_pred ccccccCCCCc------ccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCC-Ccc
Q 007417 328 VKTVFLDGVPP------HWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNS 400 (604)
Q Consensus 328 ~~~l~v~nLp~------~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g-~~~ 400 (604)
.++|||+|||+ .+++++|+++|++||.|..|.|++++.|++++|||||+|.++++|.+||..|||..|.| +.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 47899999999 99999999999999999999999999999999999999999999999999999999999 999
Q ss_pred EEEEeee
Q 007417 401 KVKLRAR 407 (604)
Q Consensus 401 ~v~~~~~ 407 (604)
.|.++..
T Consensus 86 ~V~~a~~ 92 (100)
T 3ns6_A 86 FLYTMKD 92 (100)
T ss_dssp EEEESHH
T ss_pred EEEECch
Confidence 9988643
No 94
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.2e-16 Score=131.91 Aligned_cols=82 Identities=18% Similarity=0.415 Sum_probs=77.7
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEee
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
..++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.++++|.+|++.||+..|.|+.|.|.++.
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 90 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAG 90 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred ec
Q 007417 407 RL 408 (604)
Q Consensus 407 ~~ 408 (604)
..
T Consensus 91 ~~ 92 (102)
T 1x5s_A 91 KS 92 (102)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 95
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.5e-16 Score=133.91 Aligned_cols=83 Identities=29% Similarity=0.571 Sum_probs=77.8
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCC
Q 007417 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (604)
Q Consensus 147 ~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (604)
..+.++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|++.|++..|.|+.|.|..
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred CCC
Q 007417 227 SED 229 (604)
Q Consensus 227 ~~~ 229 (604)
+..
T Consensus 89 a~~ 91 (102)
T 1x5s_A 89 AGK 91 (102)
T ss_dssp EEC
T ss_pred CCC
Confidence 543
No 96
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=3.2e-16 Score=133.13 Aligned_cols=86 Identities=27% Similarity=0.492 Sum_probs=79.7
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeec-CCCCCCcceEEEEEeehHHHHHHHHhc-CCCeeeCcccc
Q 007417 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKN-FSTNRNKGYAFVKFANKEHAKRALTEM-KNPVICGKRCG 223 (604)
Q Consensus 146 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d-~~tg~~kG~afV~F~~~e~A~~Al~~l-~~~~l~g~~i~ 223 (604)
.....++|||+|||+.+|+++|+++|++||.|..|+|+++ +.+++++|||||+|.+.++|.+|+..| ++..|.|+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 3446899999999999999999999999999999999999 789999999999999999999999999 99999999999
Q ss_pred cCCCCCCC
Q 007417 224 TAPSEDND 231 (604)
Q Consensus 224 v~~~~~~~ 231 (604)
|..+....
T Consensus 91 v~~a~~~~ 98 (107)
T 2cph_A 91 LEWADSEV 98 (107)
T ss_dssp EEECCCCC
T ss_pred EEeCCCCC
Confidence 98876543
No 97
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.64 E-value=2.2e-16 Score=133.85 Aligned_cols=85 Identities=24% Similarity=0.475 Sum_probs=78.6
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCee---eCccc
Q 007417 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVI---CGKRC 222 (604)
Q Consensus 146 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l---~g~~i 222 (604)
.....++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+|+..|++..+ .|+.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 345689999999999999999999999999999999999999999999999999999999999999999887 88999
Q ss_pred ccCCCCCC
Q 007417 223 GTAPSEDN 230 (604)
Q Consensus 223 ~v~~~~~~ 230 (604)
.|..+...
T Consensus 89 ~v~~a~~~ 96 (106)
T 2dgp_A 89 QVKPADSE 96 (106)
T ss_dssp EEEECCCC
T ss_pred EEEECCcc
Confidence 98877653
No 98
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=5.9e-16 Score=131.26 Aligned_cols=82 Identities=22% Similarity=0.330 Sum_probs=77.9
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEee
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
..++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.++.
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 101 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCF 101 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeec
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred ec
Q 007417 407 RL 408 (604)
Q Consensus 407 ~~ 408 (604)
..
T Consensus 102 ~~ 103 (106)
T 1p27_B 102 VR 103 (106)
T ss_dssp ES
T ss_pred CC
Confidence 53
No 99
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.64 E-value=3.7e-16 Score=129.62 Aligned_cols=81 Identities=19% Similarity=0.383 Sum_probs=76.1
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCC
Q 007417 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (604)
Q Consensus 147 ~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (604)
....++|||+|||+.+|+++|+++|++||+|..|+|++++. ++++|||||+|.+.++|.+|+..|++..|.|+.|.|..
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 34678999999999999999999999999999999999975 89999999999999999999999999999999999887
Q ss_pred CC
Q 007417 227 SE 228 (604)
Q Consensus 227 ~~ 228 (604)
+.
T Consensus 92 a~ 93 (95)
T 2ywk_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cC
Confidence 65
No 100
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.64 E-value=3.9e-16 Score=134.47 Aligned_cols=82 Identities=18% Similarity=0.342 Sum_probs=77.0
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEee
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
..++|||+|||+.+++++|+++|++||.|..|.|++++.+++++|||||+|.+.++|.+||..||+..|.|+.|.|.++.
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 103 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKR 103 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcC
Confidence 35799999999999999999999999999999999999899999999999999999999999999999999999998764
Q ss_pred ec
Q 007417 407 RL 408 (604)
Q Consensus 407 ~~ 408 (604)
..
T Consensus 104 ~~ 105 (115)
T 2cpz_A 104 SK 105 (115)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 101
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.4e-16 Score=134.12 Aligned_cols=83 Identities=19% Similarity=0.505 Sum_probs=78.4
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCC
Q 007417 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (604)
Q Consensus 147 ~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (604)
....++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|++.|++..|.|+.|.|..
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCC
Q 007417 227 SED 229 (604)
Q Consensus 227 ~~~ 229 (604)
+.+
T Consensus 89 a~~ 91 (102)
T 2cqb_A 89 AKP 91 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 102
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=2.4e-16 Score=132.93 Aligned_cols=81 Identities=17% Similarity=0.304 Sum_probs=77.0
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEee
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
..++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++.
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVAR 91 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECS
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECC
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred e
Q 007417 407 R 407 (604)
Q Consensus 407 ~ 407 (604)
.
T Consensus 92 ~ 92 (103)
T 2dnm_A 92 Y 92 (103)
T ss_dssp S
T ss_pred c
Confidence 3
No 103
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.9e-16 Score=133.19 Aligned_cols=83 Identities=22% Similarity=0.392 Sum_probs=77.9
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccC
Q 007417 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (604)
Q Consensus 146 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (604)
...+.++|||+|||+++|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|.+|+..|++..|.|+.|.|.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 34467899999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCC
Q 007417 226 PSE 228 (604)
Q Consensus 226 ~~~ 228 (604)
.+.
T Consensus 99 ~a~ 101 (106)
T 1p27_B 99 WCF 101 (106)
T ss_dssp ESE
T ss_pred eec
Confidence 764
No 104
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.64 E-value=3.4e-16 Score=137.49 Aligned_cols=85 Identities=26% Similarity=0.372 Sum_probs=79.9
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccC
Q 007417 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (604)
Q Consensus 146 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (604)
.....++|||+|||+++|+++|+++|++||+|..|+|++++.+++++|||||+|.+.++|++||..|++..|.|+.|.|.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCC
Q 007417 226 PSEDN 230 (604)
Q Consensus 226 ~~~~~ 230 (604)
.+...
T Consensus 122 ~a~~~ 126 (129)
T 2kxn_B 122 FSITK 126 (129)
T ss_dssp CCSSS
T ss_pred EecCC
Confidence 87653
No 105
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=9.2e-16 Score=129.31 Aligned_cols=80 Identities=18% Similarity=0.370 Sum_probs=75.3
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEee
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
..++|||+|||+.+++++|+++|++||.|..|.|+.+ ++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 14 QVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp SCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 4589999999999999999999999999999999998 78999999999999999999999999999999999999874
Q ss_pred ec
Q 007417 407 RL 408 (604)
Q Consensus 407 ~~ 408 (604)
..
T Consensus 92 ~~ 93 (103)
T 2d9p_A 92 RK 93 (103)
T ss_dssp SC
T ss_pred cc
Confidence 43
No 106
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=4.3e-16 Score=134.44 Aligned_cols=83 Identities=29% Similarity=0.485 Sum_probs=77.4
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccC
Q 007417 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (604)
Q Consensus 146 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (604)
.....++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|++||..+++ .|.|+.|.|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 345689999999999999999999999999999999999999999999999999999999999999998 8999999987
Q ss_pred CCCC
Q 007417 226 PSED 229 (604)
Q Consensus 226 ~~~~ 229 (604)
.+..
T Consensus 92 ~a~~ 95 (116)
T 2cqd_A 92 LAYL 95 (116)
T ss_dssp ESTT
T ss_pred Eccc
Confidence 7643
No 107
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.64 E-value=3.1e-16 Score=144.24 Aligned_cols=84 Identities=19% Similarity=0.352 Sum_probs=77.6
Q ss_pred hccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCccccc
Q 007417 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (604)
Q Consensus 145 ~~~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v 224 (604)
......++|||+|||+.+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..|++..|.|+.|.|
T Consensus 67 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 146 (165)
T 1rk8_A 67 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 146 (165)
T ss_dssp CCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCC
Q 007417 225 APSE 228 (604)
Q Consensus 225 ~~~~ 228 (604)
.++.
T Consensus 147 ~~a~ 150 (165)
T 1rk8_A 147 DWCF 150 (165)
T ss_dssp EESE
T ss_pred EEec
Confidence 7664
No 108
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.64 E-value=3.4e-16 Score=126.99 Aligned_cols=79 Identities=20% Similarity=0.456 Sum_probs=75.7
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEe
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~ 405 (604)
..++|||+|||+.+++++|+++|++||.|..|.|++++.+++++|||||+|.+.++|.+|++.||+..|.|+.|.|.++
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 3579999999999999999999999999999999999999999999999999999999999999999999999999875
No 109
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.64 E-value=3.6e-16 Score=130.83 Aligned_cols=81 Identities=26% Similarity=0.361 Sum_probs=76.7
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEE--------EEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeee
Q 007417 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIE--------VRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVIC 218 (604)
Q Consensus 147 ~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~--------v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~ 218 (604)
....++|||+|||+++|+++|+++|++||.|.. |+|++++.+++++|||||+|.+.++|.+|++.|++..|.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 446799999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred CcccccCCC
Q 007417 219 GKRCGTAPS 227 (604)
Q Consensus 219 g~~i~v~~~ 227 (604)
|+.|+|..+
T Consensus 90 g~~l~V~~A 98 (99)
T 2la6_A 90 GNPIKVSFA 98 (99)
T ss_dssp SSBCEEEEC
T ss_pred CcEEEEEec
Confidence 999988664
No 110
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.63 E-value=4.4e-16 Score=123.87 Aligned_cols=73 Identities=16% Similarity=0.266 Sum_probs=68.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCC
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (604)
.+..|||+||++.+|+++|+++|.+||+|.+++++. ++|||||+|.+.++|.+|++.||+..|.|+.|+|..+
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 467899999999999999999999999999999964 6999999999999999999999999999999988765
No 111
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=8e-16 Score=128.46 Aligned_cols=77 Identities=23% Similarity=0.247 Sum_probs=70.4
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcC--CCeeeCccccc
Q 007417 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMK--NPVICGKRCGT 224 (604)
Q Consensus 147 ~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~--~~~l~g~~i~v 224 (604)
....++|||+|||+++|+++|+++|++||.|.+|+|+++ +|||||+|.+.++|.+|++.|+ +..|.|+.|.|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 346899999999999999999999999999999999864 7999999999999999999876 47899999999
Q ss_pred CCCCC
Q 007417 225 APSED 229 (604)
Q Consensus 225 ~~~~~ 229 (604)
..+..
T Consensus 87 ~~A~~ 91 (105)
T 1sjq_A 87 QFSNH 91 (105)
T ss_dssp CCCSS
T ss_pred EEcCC
Confidence 88765
No 112
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=3.5e-16 Score=130.61 Aligned_cols=81 Identities=11% Similarity=0.297 Sum_probs=75.1
Q ss_pred ccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCC---CCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEE
Q 007417 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMS---TAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (604)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~---~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~ 404 (604)
.++|||+|||+.+++++|+++|++||.|..|.|+.++. ++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.+
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (98)
T 2cpf_A 5 SSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRI 84 (98)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 47999999999999999999999999999999999876 668999999999999999999999999999999998887
Q ss_pred eeec
Q 007417 405 RARL 408 (604)
Q Consensus 405 ~~~~ 408 (604)
+...
T Consensus 85 a~~~ 88 (98)
T 2cpf_A 85 SERA 88 (98)
T ss_dssp SSCS
T ss_pred ccCC
Confidence 6443
No 113
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=5e-16 Score=131.43 Aligned_cols=83 Identities=29% Similarity=0.569 Sum_probs=78.1
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCC
Q 007417 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (604)
Q Consensus 147 ~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (604)
....++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||.. ++..|.|+.|.|..
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 44679999999999999999999999999999999999999999999999999999999999998 99999999999988
Q ss_pred CCCC
Q 007417 227 SEDN 230 (604)
Q Consensus 227 ~~~~ 230 (604)
+.+.
T Consensus 92 a~~~ 95 (105)
T 2dh8_A 92 CTPR 95 (105)
T ss_dssp SCCS
T ss_pred ccCC
Confidence 7653
No 114
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.63 E-value=5.7e-16 Score=129.59 Aligned_cols=80 Identities=26% Similarity=0.333 Sum_probs=76.2
Q ss_pred ccccccccCCCCcccChhhHHhhhcccCCEEE--------EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCC
Q 007417 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIR--------IVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397 (604)
Q Consensus 326 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~--------v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g 397 (604)
...++|||+|||+.+++++|+++|++||.|.. |.|+.++.+++++|||||+|.+.++|.+|++.|||..|.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 34689999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred CccEEEEe
Q 007417 398 GNSKVKLR 405 (604)
Q Consensus 398 ~~~~v~~~ 405 (604)
+.|.|.++
T Consensus 91 ~~l~V~~A 98 (99)
T 2la6_A 91 NPIKVSFA 98 (99)
T ss_dssp SBCEEEEC
T ss_pred cEEEEEec
Confidence 99999875
No 115
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3.2e-16 Score=134.53 Aligned_cols=85 Identities=20% Similarity=0.312 Sum_probs=79.2
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeE--------EEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCee
Q 007417 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVI--------EVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVI 217 (604)
Q Consensus 146 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~--------~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l 217 (604)
+....++|||+|||+++|+++|+++|++||.|. .|+|+.++.+++++|||||+|.+.++|.+||+.|++..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345789999999999999999999999999999 699999999999999999999999999999999999999
Q ss_pred eCcccccCCCCCC
Q 007417 218 CGKRCGTAPSEDN 230 (604)
Q Consensus 218 ~g~~i~v~~~~~~ 230 (604)
.|+.|.|..+...
T Consensus 91 ~g~~l~V~~a~~~ 103 (113)
T 2cpe_A 91 QGSKLKVSLARKK 103 (113)
T ss_dssp TTEECEEECSSCC
T ss_pred CCCEEEEEECCCC
Confidence 9999999887653
No 116
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.63 E-value=5e-16 Score=133.87 Aligned_cols=81 Identities=31% Similarity=0.585 Sum_probs=76.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCC
Q 007417 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (604)
Q Consensus 148 ~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (604)
...++|||+|||+++|+++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|++|++.|++..|.|+.|.|..+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 467899999999999999999999999999999999997 8999999999999999999999999999999999998776
Q ss_pred CC
Q 007417 228 ED 229 (604)
Q Consensus 228 ~~ 229 (604)
..
T Consensus 84 ~~ 85 (116)
T 2fy1_A 84 KK 85 (116)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 117
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.63 E-value=4.4e-16 Score=141.37 Aligned_cols=80 Identities=23% Similarity=0.481 Sum_probs=75.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccC--CeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCC
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFERIG--EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~~G--~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (604)
..++|||+|||+++|+++|+++|++|| .|.+|+|++++.||+++|||||+|.+.++|.+||..|++..|.|+.|.|..
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 999999999999999999999999999999999999999999999999887
Q ss_pred CC
Q 007417 227 SE 228 (604)
Q Consensus 227 ~~ 228 (604)
+.
T Consensus 134 a~ 135 (156)
T 3n9u_C 134 AT 135 (156)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 118
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.63 E-value=6e-16 Score=130.94 Aligned_cols=81 Identities=22% Similarity=0.425 Sum_probs=75.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeC---ccccc
Q 007417 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICG---KRCGT 224 (604)
Q Consensus 148 ~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g---~~i~v 224 (604)
...++|||+|||+++|+++|+++|++||.|..|+|++++ +++++|||||+|.+.++|.+|+..|++..|.+ +.|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 468999999999999999999999999999999999997 79999999999999999999999999999998 99988
Q ss_pred CCCCC
Q 007417 225 APSED 229 (604)
Q Consensus 225 ~~~~~ 229 (604)
..+..
T Consensus 92 ~~a~~ 96 (105)
T 2dnh_A 92 KFADT 96 (105)
T ss_dssp EESCS
T ss_pred EECcc
Confidence 77654
No 119
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=6e-16 Score=130.95 Aligned_cols=80 Identities=19% Similarity=0.334 Sum_probs=76.3
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEee
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
..++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 93 (105)
T 1x5u_A 14 QDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKAS 93 (105)
T ss_dssp TTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 45799999999999999999999999999999999999899999999999999999999999999999999999998763
No 120
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.63 E-value=5.2e-16 Score=130.86 Aligned_cols=81 Identities=21% Similarity=0.425 Sum_probs=76.0
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCC
Q 007417 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (604)
Q Consensus 147 ~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (604)
....++|||+|||+++|+++|+++|++|| |..|+|++++.+++++|||||+|.+.++|.+|| .|++..|.|+.|.|..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 34678999999999999999999999997 999999999999999999999999999999999 8999999999999887
Q ss_pred CCC
Q 007417 227 SED 229 (604)
Q Consensus 227 ~~~ 229 (604)
+..
T Consensus 90 a~~ 92 (103)
T 2dng_A 90 AEG 92 (103)
T ss_dssp CCC
T ss_pred ecC
Confidence 754
No 121
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.63 E-value=8.7e-16 Score=137.04 Aligned_cols=80 Identities=23% Similarity=0.432 Sum_probs=76.3
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEee
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
..++|||+|||+.+++++|+++|++||.|..|.|++++.+++++|||||+|.+.++|.+||..||+..|.|+.|.|.++.
T Consensus 41 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 120 (139)
T 1u6f_A 41 VLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAA 120 (139)
T ss_dssp TTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999888763
No 122
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.63 E-value=5.9e-16 Score=141.06 Aligned_cols=85 Identities=16% Similarity=0.346 Sum_probs=79.6
Q ss_pred hccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCccccc
Q 007417 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (604)
Q Consensus 145 ~~~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v 224 (604)
......++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+||..|++..|.|+.|.|
T Consensus 34 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 34 KLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34457899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCC
Q 007417 225 APSED 229 (604)
Q Consensus 225 ~~~~~ 229 (604)
.++..
T Consensus 114 ~~a~~ 118 (156)
T 1h2v_Z 114 DWDAG 118 (156)
T ss_dssp EEESC
T ss_pred EECCC
Confidence 87754
No 123
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1.1e-15 Score=129.74 Aligned_cols=81 Identities=17% Similarity=0.416 Sum_probs=76.7
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeec-CCCCCcceEEEEEeCCHHHHHHHHHHh-cCCeeCCCccEEEE
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARN-MSTAKRKDYGFIDFSTHEAAVACINAI-NNKEFSDGNSKVKL 404 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d-~~~g~~~G~afV~F~~~~~A~~A~~~l-ng~~~~g~~~~v~~ 404 (604)
..++|||+|||+.+++++|+++|++||.|..|.|+++ +.++.++|||||+|.+.++|.+||..| |+..|.|+.|.|.+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~ 93 (107)
T 2cph_A 14 TTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEW 93 (107)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEe
Confidence 4589999999999999999999999999999999999 789999999999999999999999999 99999999999988
Q ss_pred eee
Q 007417 405 RAR 407 (604)
Q Consensus 405 ~~~ 407 (604)
+..
T Consensus 94 a~~ 96 (107)
T 2cph_A 94 ADS 96 (107)
T ss_dssp CCC
T ss_pred CCC
Confidence 744
No 124
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3.1e-16 Score=132.02 Aligned_cols=81 Identities=20% Similarity=0.439 Sum_probs=76.6
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEee
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
..++|||+|||+.+++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|.+|+..||+..|.|+.|.|.++.
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 90 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCC
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999998864
Q ss_pred e
Q 007417 407 R 407 (604)
Q Consensus 407 ~ 407 (604)
.
T Consensus 91 ~ 91 (102)
T 2cqb_A 91 P 91 (102)
T ss_dssp C
T ss_pred C
Confidence 3
No 125
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=7.4e-16 Score=127.79 Aligned_cols=79 Identities=14% Similarity=0.235 Sum_probs=75.7
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEe
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~ 405 (604)
..++|||+|||+.+++++|+++|++||.|..|.|++++.+++++|||||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 14 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp GGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 4589999999999999999999999999999999999999999999999999999999999999999999999988875
No 126
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.63 E-value=2.2e-16 Score=124.77 Aligned_cols=75 Identities=31% Similarity=0.533 Sum_probs=71.1
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCC
Q 007417 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (604)
Q Consensus 152 ~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (604)
+|||+|||+++|+++|+++|++||.|..|++++++.+++++|||||+|.+.++|++|++ |++..|.|+.|.|..+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999999899999999999999999999998 8999999999987653
No 127
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.63 E-value=4.8e-16 Score=132.79 Aligned_cols=83 Identities=19% Similarity=0.350 Sum_probs=78.0
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccC
Q 007417 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (604)
Q Consensus 146 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (604)
.....++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+|+..|++..|.|+.|.|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCC
Q 007417 226 PSE 228 (604)
Q Consensus 226 ~~~ 228 (604)
.+.
T Consensus 102 ~a~ 104 (110)
T 1oo0_B 102 WCF 104 (110)
T ss_dssp ESE
T ss_pred Ecc
Confidence 764
No 128
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=7.9e-16 Score=131.63 Aligned_cols=81 Identities=25% Similarity=0.386 Sum_probs=76.4
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhc------CCeeCCCcc
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN------NKEFSDGNS 400 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~ln------g~~~~g~~~ 400 (604)
..++|||+|||+.+++++|+++|++||.|..|.|++++.++.++|||||+|.+.++|.+||..|| +..|.|+.|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l 93 (111)
T 1x4h_A 14 EGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQL 93 (111)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEE
Confidence 45799999999999999999999999999999999999999999999999999999999999999 999999998
Q ss_pred EEEEeee
Q 007417 401 KVKLRAR 407 (604)
Q Consensus 401 ~v~~~~~ 407 (604)
.|.++..
T Consensus 94 ~v~~a~~ 100 (111)
T 1x4h_A 94 KVDLAVT 100 (111)
T ss_dssp EEECCCC
T ss_pred EEEECCC
Confidence 8887643
No 129
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=5e-16 Score=130.98 Aligned_cols=81 Identities=26% Similarity=0.457 Sum_probs=76.1
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCC
Q 007417 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (604)
Q Consensus 147 ~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (604)
....++|||+|||+++|+++|+++|++||.|..|+|+.+ +++++|||||+|.+.++|.+|+..|++..|.|+.|.|..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 346899999999999999999999999999999999988 799999999999999999999999999999999999887
Q ss_pred CCC
Q 007417 227 SED 229 (604)
Q Consensus 227 ~~~ 229 (604)
+..
T Consensus 90 a~~ 92 (103)
T 2d9p_A 90 AQR 92 (103)
T ss_dssp CSS
T ss_pred ecc
Confidence 654
No 130
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=3.3e-16 Score=130.23 Aligned_cols=80 Identities=23% Similarity=0.464 Sum_probs=75.9
Q ss_pred ccccccCCCCcccChhhHHhhhcccCCEEEE-EEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEee
Q 007417 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRI-VLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v-~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
.++|||+|||+.+++++|+++|++||.|..| .|++++.++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.++.
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (96)
T 1x5t_A 5 SSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAF 84 (96)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEec
Confidence 5799999999999999999999999999999 999998899999999999999999999999999999999999998863
Q ss_pred e
Q 007417 407 R 407 (604)
Q Consensus 407 ~ 407 (604)
.
T Consensus 85 ~ 85 (96)
T 1x5t_A 85 K 85 (96)
T ss_dssp C
T ss_pred c
Confidence 3
No 131
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=5.8e-16 Score=130.79 Aligned_cols=80 Identities=24% Similarity=0.453 Sum_probs=75.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCC-CCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCC
Q 007417 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFST-NRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (604)
Q Consensus 148 ~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~t-g~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (604)
...++|||+|||+++|+++|+++|++|| |..|+|++++.+ ++++|||||+|.+.++|.+|| .|++..|.|+.|.|..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4579999999999999999999999999 999999999988 999999999999999999999 8999999999999887
Q ss_pred CCC
Q 007417 227 SED 229 (604)
Q Consensus 227 ~~~ 229 (604)
+..
T Consensus 91 a~~ 93 (104)
T 1wi8_A 91 ADQ 93 (104)
T ss_dssp CCC
T ss_pred ccC
Confidence 654
No 132
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.62 E-value=6.6e-16 Score=131.20 Aligned_cols=81 Identities=19% Similarity=0.352 Sum_probs=76.2
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccC
Q 007417 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (604)
Q Consensus 146 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (604)
.....++|||+|||+.+|+++|+++|++||.|..|+|+.++ +++++|||||+|.+.++|.+|+..|++..|.|+.|.|.
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34568999999999999999999999999999999999998 89999999999999999999999999999999999886
Q ss_pred CC
Q 007417 226 PS 227 (604)
Q Consensus 226 ~~ 227 (604)
.+
T Consensus 104 ~a 105 (107)
T 3ulh_A 104 LV 105 (107)
T ss_dssp EE
T ss_pred Ee
Confidence 54
No 133
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.62 E-value=9.3e-16 Score=130.38 Aligned_cols=82 Identities=24% Similarity=0.377 Sum_probs=77.1
Q ss_pred ccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEe
Q 007417 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (604)
Q Consensus 326 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~ 405 (604)
...++|||+|||..+++++|+++|++||.|..|.|++++.+++++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 103 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 103 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred ee
Q 007417 406 AR 407 (604)
Q Consensus 406 ~~ 407 (604)
..
T Consensus 104 ~~ 105 (108)
T 2jrs_A 104 TE 105 (108)
T ss_dssp CS
T ss_pred cc
Confidence 43
No 134
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.62 E-value=5.8e-16 Score=124.38 Aligned_cols=73 Identities=16% Similarity=0.326 Sum_probs=68.4
Q ss_pred CCEEEEcCCCCCC------CHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCc-cc
Q 007417 150 EHEIFIGGLDRDA------TQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGK-RC 222 (604)
Q Consensus 150 ~~~vfV~nLp~~~------te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~-~i 222 (604)
+++|||+|||+.+ |+++|+++|++||.|.+|+|+ +.+++++|||||+|.+.++|.+|+..|++..|.|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4799999999999 789999999999999999987 46899999999999999999999999999999999 88
Q ss_pred cc
Q 007417 223 GT 224 (604)
Q Consensus 223 ~v 224 (604)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 135
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.62 E-value=1.2e-15 Score=128.65 Aligned_cols=79 Identities=15% Similarity=0.291 Sum_probs=74.4
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEee
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
..++|||+|||+.+++++|+++|++|| |..|.|++++.+++++|||||+|.+.++|.+|| .||+..|.|+.|.|.++.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dng_A 14 PPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAE 91 (103)
T ss_dssp SCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECC
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEec
Confidence 457999999999999999999999997 999999999999999999999999999999999 899999999999998864
Q ss_pred e
Q 007417 407 R 407 (604)
Q Consensus 407 ~ 407 (604)
.
T Consensus 92 ~ 92 (103)
T 2dng_A 92 G 92 (103)
T ss_dssp C
T ss_pred C
Confidence 3
No 136
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.62 E-value=5.4e-16 Score=140.34 Aligned_cols=117 Identities=20% Similarity=0.297 Sum_probs=103.8
Q ss_pred CCCcceEEEEEeehHHHHHHHHhc-CCCeeeCcccccCCCC----------------------CCCcceecccCCCCcHH
Q 007417 189 NRNKGYAFVKFANKEHAKRALTEM-KNPVICGKRCGTAPSE----------------------DNDTLFVGNICNTWTKE 245 (604)
Q Consensus 189 g~~kG~afV~F~~~e~A~~Al~~l-~~~~l~g~~i~v~~~~----------------------~~~~l~v~nlp~~~te~ 245 (604)
...+|+++|+|.+.++|++|++.+ ++..|.| .+.+..+. ..++|||+|||+.+|++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~ 88 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKT 88 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCH
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHH
Confidence 467999999999999999999999 8888888 66654432 35799999999999999
Q ss_pred HHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCeecCCCCcceeecccCCCC
Q 007417 246 AIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318 (604)
Q Consensus 246 ~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~g~~~r~l~v~~a~~~~ 318 (604)
+|+++|+.||. |..|.++++ ++|||||+|.+.++|.+|+..|++..+ .++.|.|.++.+.+
T Consensus 89 ~l~~~F~~~G~--i~~v~i~~~------~~g~afV~f~~~~~a~~A~~~l~g~~~----~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 89 ELERAFGYYGP--LRSVWVARN------PPGFAFVEFEDPRDAADAVRELDGRTL----CGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHHHHSC--EEEEEECSS------SCSEEEEEESSHHHHHHHHHHHSSSCS----SSSCCEEEECCCCC
T ss_pred HHHHHHHhhCC--EEEEEEeeC------CCcEEEEEECCHHHHHHHHHHcCCCEE----CCeEEEEEEcCCCC
Confidence 99999999999 999999876 589999999999999999999999887 57999999998753
No 137
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=7.3e-16 Score=130.18 Aligned_cols=79 Identities=11% Similarity=0.229 Sum_probs=74.6
Q ss_pred cccccccCCCCcccChhhHHhhhcc-cCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCe-eCCCccEEEE
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKG-YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE-FSDGNSKVKL 404 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~-~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~-~~g~~~~v~~ 404 (604)
..++|||+|||+.+|+++|+++|++ ||.|..|.|+.+. +++++|||||+|.+.++|.+|+..||+.. |.|+.|.|.+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 3579999999999999999999999 9999999999998 89999999999999999999999999999 9999988877
Q ss_pred ee
Q 007417 405 RA 406 (604)
Q Consensus 405 ~~ 406 (604)
+.
T Consensus 87 a~ 88 (104)
T 2dhg_A 87 AI 88 (104)
T ss_dssp CC
T ss_pred cc
Confidence 63
No 138
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.62 E-value=4.5e-16 Score=127.13 Aligned_cols=81 Identities=26% Similarity=0.475 Sum_probs=75.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCC-CcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCC
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNR-NKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~-~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (604)
..++|||+|||+++|+++|+++|++||.|..|.|+.++.++. ++|||||+|.+.++|.+|+..|++..|.|+.|.|..+
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468999999999999999999999999999999999987766 9999999999999999999999999999999998765
Q ss_pred CC
Q 007417 228 ED 229 (604)
Q Consensus 228 ~~ 229 (604)
.+
T Consensus 83 ~~ 84 (88)
T 4a8x_A 83 LA 84 (88)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 139
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.62 E-value=2.7e-16 Score=130.47 Aligned_cols=80 Identities=13% Similarity=0.153 Sum_probs=75.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCCC
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~ 228 (604)
..++|||+|||+++|+++|+++|++||.|..++++.++.+++++|||||+|.+.++|++|++.|++..|.|+.|.|..+.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999987764
No 140
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=2.3e-16 Score=125.41 Aligned_cols=76 Identities=29% Similarity=0.525 Sum_probs=72.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCC
Q 007417 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (604)
Q Consensus 151 ~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (604)
++|||+|||+++|+++|+++|++||+|..|++++++.+++++|||||+|.+.++|.+|+..++ ..|.|+.|.|..+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 589999999999999999999999999999999999999999999999999999999999998 8999999887654
No 141
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.62 E-value=2.9e-16 Score=138.58 Aligned_cols=81 Identities=20% Similarity=0.323 Sum_probs=76.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEE--EEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCC----eeeCccc
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNP----VICGKRC 222 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~--v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~----~l~g~~i 222 (604)
..++|||+|||+++|+++|+++|++||.|.. |+|++++.|++++|||||+|.+. +|.+|+..|++. .|.|+.|
T Consensus 22 ~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l 100 (131)
T 2m2b_A 22 ANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTI 100 (131)
T ss_dssp CCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEE
Confidence 5789999999999999999999999999977 99999999999999999999999 999999999999 9999999
Q ss_pred ccCCCCCC
Q 007417 223 GTAPSEDN 230 (604)
Q Consensus 223 ~v~~~~~~ 230 (604)
.|..+...
T Consensus 101 ~V~~a~~~ 108 (131)
T 2m2b_A 101 NVEFAKGS 108 (131)
T ss_dssp CCEECCCS
T ss_pred EEEECCCC
Confidence 99877654
No 142
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.5e-15 Score=127.20 Aligned_cols=79 Identities=16% Similarity=0.353 Sum_probs=74.9
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEee
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
..++|||+|||+.+++++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|.+|+..||+..|.|+.|.|.++.
T Consensus 16 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 16 EKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 45799999999999999999999999999999999997 89999999999999999999999999999999999998763
No 143
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=6.6e-16 Score=129.82 Aligned_cols=78 Identities=17% Similarity=0.374 Sum_probs=74.2
Q ss_pred ccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEeee
Q 007417 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407 (604)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~~ 407 (604)
.++|||+|||+.+|+++|+++|++||.|..|.|++++. ++++|||||+|.+.++|.+||. +|+..|.|+.|.|.++..
T Consensus 11 ~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 11 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKDD 88 (103)
T ss_dssp GGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEchH
Confidence 47999999999999999999999999999999999987 9999999999999999999998 999999999999998655
No 144
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.62 E-value=7.4e-16 Score=128.10 Aligned_cols=81 Identities=23% Similarity=0.392 Sum_probs=76.7
Q ss_pred ccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEeee
Q 007417 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407 (604)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~~ 407 (604)
.++|||+|||..+++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|.+|+..|||..|.|+.|.|.++..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999988744
Q ss_pred c
Q 007417 408 L 408 (604)
Q Consensus 408 ~ 408 (604)
.
T Consensus 82 ~ 82 (96)
T 2x1f_A 82 S 82 (96)
T ss_dssp S
T ss_pred C
Confidence 3
No 145
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=6.1e-16 Score=128.06 Aligned_cols=79 Identities=27% Similarity=0.460 Sum_probs=75.7
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEe
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~ 405 (604)
..++|||+|||+.+++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|.+|++.||+..|.|+.|.|.++
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 4579999999999999999999999999999999999999999999999999999999999999999999999999875
No 146
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.62 E-value=1.4e-15 Score=125.29 Aligned_cols=81 Identities=23% Similarity=0.358 Sum_probs=75.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCC
Q 007417 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (604)
Q Consensus 148 ~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (604)
...++|||+|||+++|+++|+++|++||.|..|+|+++ +++++|||||+|.+.++|.+|+..|++..|.|+.|.|..+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 46799999999999999999999999999999999874 7899999999999999999999999999999999999877
Q ss_pred CCC
Q 007417 228 EDN 230 (604)
Q Consensus 228 ~~~ 230 (604)
...
T Consensus 84 ~~~ 86 (92)
T 2dgv_A 84 RNA 86 (92)
T ss_dssp SCC
T ss_pred CCC
Confidence 653
No 147
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.62 E-value=1.9e-15 Score=127.87 Aligned_cols=81 Identities=19% Similarity=0.281 Sum_probs=75.3
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCC---CccEEE
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD---GNSKVK 403 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g---~~~~v~ 403 (604)
..++|||+|||+.+++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|.+||..||+..|.+ +.|.|.
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 35799999999999999999999999999999999997 79999999999999999999999999999998 999998
Q ss_pred Eeeec
Q 007417 404 LRARL 408 (604)
Q Consensus 404 ~~~~~ 408 (604)
++...
T Consensus 93 ~a~~~ 97 (105)
T 2dnh_A 93 FADTD 97 (105)
T ss_dssp ESCSS
T ss_pred ECccC
Confidence 76443
No 148
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.62 E-value=3.5e-16 Score=131.44 Aligned_cols=84 Identities=27% Similarity=0.551 Sum_probs=76.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCCCC-
Q 007417 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSED- 229 (604)
Q Consensus 151 ~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~~- 229 (604)
++|||+|||+++|+++|+++|++||.|..|+|+.+ ++|||||+|.+.++|.+|+..|++..|.|+.|.|..+..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999876 789999999999999999999999999999999865532
Q ss_pred ---------------CCcceecccC
Q 007417 230 ---------------NDTLFVGNIC 239 (604)
Q Consensus 230 ---------------~~~l~v~nlp 239 (604)
..+|||+||+
T Consensus 76 ~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 76 PRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CCcccCCCCCccccCCCceecCCCC
Confidence 4688999886
No 149
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.61 E-value=3.7e-16 Score=143.91 Aligned_cols=78 Identities=22% Similarity=0.503 Sum_probs=72.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeC--cccccCC
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICG--KRCGTAP 226 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g--~~i~v~~ 226 (604)
..++|||+|||..+|+++|+++|++||.|..|++++++.+++++|||||+|.+.++|.+|+..|++..|.| ++|.|..
T Consensus 88 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~ 167 (168)
T 1b7f_A 88 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRL 167 (168)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEe
Confidence 35799999999999999999999999999999999998899999999999999999999999999999987 7777653
No 150
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=2.9e-15 Score=128.73 Aligned_cols=79 Identities=20% Similarity=0.257 Sum_probs=74.6
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEee
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
..++|||+|||+.+++++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|.+||..||+..|.|+.|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 14 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 35799999999999999999999999999999999997 59999999999999999999999999999999999998864
No 151
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.61 E-value=6.3e-16 Score=129.56 Aligned_cols=82 Identities=21% Similarity=0.423 Sum_probs=74.0
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecC-CCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccC
Q 007417 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNF-STNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (604)
Q Consensus 147 ~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~-~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (604)
....++|||+|||+++|+++|+++|++|| |.+|+|++++ .+++++|||||+|.+.++|.+|+ .|++..|.|+.|.|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 44679999999999999999999999999 9999999998 68999999999999999999999 899999999999998
Q ss_pred CCCCC
Q 007417 226 PSEDN 230 (604)
Q Consensus 226 ~~~~~ 230 (604)
.+...
T Consensus 94 ~a~~~ 98 (100)
T 2j76_E 94 VADQA 98 (100)
T ss_dssp ECCCS
T ss_pred eccCC
Confidence 77653
No 152
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.61 E-value=1.2e-15 Score=130.21 Aligned_cols=83 Identities=22% Similarity=0.352 Sum_probs=78.0
Q ss_pred ccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEe
Q 007417 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (604)
Q Consensus 326 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~ 405 (604)
...++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred eec
Q 007417 406 ARL 408 (604)
Q Consensus 406 ~~~ 408 (604)
...
T Consensus 104 ~~~ 106 (110)
T 1oo0_B 104 FVK 106 (110)
T ss_dssp EES
T ss_pred ccC
Confidence 543
No 153
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=4e-16 Score=130.24 Aligned_cols=82 Identities=12% Similarity=0.137 Sum_probs=76.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCC
Q 007417 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (604)
Q Consensus 148 ~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (604)
...++|||+|||+++|+++|+++|++||.|..++++.++.+++++|||||+|.+.++|++|++.|++..|.|+.|.|..+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred CC
Q 007417 228 ED 229 (604)
Q Consensus 228 ~~ 229 (604)
..
T Consensus 93 ~~ 94 (98)
T 2cqp_A 93 SG 94 (98)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 154
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2e-15 Score=127.22 Aligned_cols=82 Identities=21% Similarity=0.428 Sum_probs=75.3
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccC
Q 007417 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (604)
Q Consensus 146 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (604)
.....++|||+|||+++|+++|+++|++||.|..|+|+.++. .++|||||+|.+.++|.+|+..|++..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 344679999999999999999999999999999999998864 489999999999999999999999999999999988
Q ss_pred CCCC
Q 007417 226 PSED 229 (604)
Q Consensus 226 ~~~~ 229 (604)
.+..
T Consensus 89 ~a~~ 92 (103)
T 2cq3_A 89 NATA 92 (103)
T ss_dssp ECCS
T ss_pred Eccc
Confidence 7765
No 155
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.61 E-value=9.5e-16 Score=130.57 Aligned_cols=82 Identities=27% Similarity=0.438 Sum_probs=73.5
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCC
Q 007417 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (604)
Q Consensus 147 ~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (604)
....++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|+..+ +..|.|+.|.|..
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 346799999999999999999999999999999999999999999999999999999999999976 4889999998877
Q ss_pred CCC
Q 007417 227 SED 229 (604)
Q Consensus 227 ~~~ 229 (604)
+..
T Consensus 101 a~~ 103 (109)
T 2rs2_A 101 AFP 103 (109)
T ss_dssp CCC
T ss_pred ccC
Confidence 654
No 156
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=5.3e-16 Score=131.02 Aligned_cols=81 Identities=23% Similarity=0.518 Sum_probs=77.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCCC
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~ 228 (604)
..++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|++.|++..|.|+.|.|..+.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred C
Q 007417 229 D 229 (604)
Q Consensus 229 ~ 229 (604)
.
T Consensus 87 ~ 87 (104)
T 1p1t_A 87 S 87 (104)
T ss_dssp C
T ss_pred C
Confidence 4
No 157
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.61 E-value=8.8e-16 Score=137.03 Aligned_cols=82 Identities=23% Similarity=0.407 Sum_probs=77.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCC
Q 007417 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (604)
Q Consensus 148 ~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (604)
...++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|++.|++..|.|+.|.|..+
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred CC
Q 007417 228 ED 229 (604)
Q Consensus 228 ~~ 229 (604)
..
T Consensus 120 ~~ 121 (139)
T 1u6f_A 120 AS 121 (139)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 158
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.61 E-value=1.1e-15 Score=129.58 Aligned_cols=81 Identities=15% Similarity=0.361 Sum_probs=76.0
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCee---CCCccEEE
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF---SDGNSKVK 403 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~---~g~~~~v~ 403 (604)
..++|||+|||..+++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|.+|+..||+..+ .++.|.|.
T Consensus 12 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 91 (106)
T 2dgp_A 12 DAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVK 91 (106)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEE
Confidence 457999999999999999999999999999999999999999999999999999999999999999998 88999998
Q ss_pred Eeee
Q 007417 404 LRAR 407 (604)
Q Consensus 404 ~~~~ 407 (604)
++..
T Consensus 92 ~a~~ 95 (106)
T 2dgp_A 92 PADS 95 (106)
T ss_dssp ECCC
T ss_pred ECCc
Confidence 7643
No 159
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.5e-15 Score=130.46 Aligned_cols=81 Identities=16% Similarity=0.309 Sum_probs=75.9
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCC
Q 007417 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (604)
Q Consensus 147 ~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (604)
....++|||+|||+++|+++|+++|++||.|..|+|+.++ +++++|||||+|.+.++|.+|+..|++..|.|+.|.|..
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 3467899999999999999999999999999999999997 599999999999999999999999999999999999876
Q ss_pred CC
Q 007417 227 SE 228 (604)
Q Consensus 227 ~~ 228 (604)
+.
T Consensus 91 a~ 92 (114)
T 2do0_A 91 DE 92 (114)
T ss_dssp CS
T ss_pred cc
Confidence 64
No 160
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.60 E-value=9.2e-16 Score=134.42 Aligned_cols=83 Identities=22% Similarity=0.392 Sum_probs=77.5
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccC
Q 007417 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (604)
Q Consensus 146 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (604)
...+.++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|++.|++..|.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34467899999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCC
Q 007417 226 PSE 228 (604)
Q Consensus 226 ~~~ 228 (604)
.+.
T Consensus 98 ~a~ 100 (126)
T 3ex7_B 98 WCF 100 (126)
T ss_dssp ESE
T ss_pred Eec
Confidence 654
No 161
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.7e-15 Score=127.71 Aligned_cols=81 Identities=25% Similarity=0.420 Sum_probs=74.7
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCC
Q 007417 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (604)
Q Consensus 147 ~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (604)
....++|||+|||+++|+++|+++|++||.|..|+|++++. .++|||||+|.+.++|.+|+..|++..|.|+.|.|..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 44689999999999999999999999999999999998854 3689999999999999999999999999999999887
Q ss_pred CCC
Q 007417 227 SED 229 (604)
Q Consensus 227 ~~~ 229 (604)
+..
T Consensus 90 a~~ 92 (103)
T 2cqi_A 90 ATT 92 (103)
T ss_dssp CCC
T ss_pred CCC
Confidence 765
No 162
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1e-15 Score=129.27 Aligned_cols=80 Identities=24% Similarity=0.321 Sum_probs=73.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEE-EEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCC
Q 007417 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIE-VRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (604)
Q Consensus 148 ~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~-v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (604)
...++|||+|||+++|+++|+++|++||.|.. |+|+.+ .+++++|||||+|.+.++|.+||.. ++..|.|+.|.|..
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 46789999999999999999999999999987 888888 7899999999999999999999997 99999999998866
Q ss_pred CCC
Q 007417 227 SED 229 (604)
Q Consensus 227 ~~~ 229 (604)
+..
T Consensus 91 ~~~ 93 (104)
T 1wg5_A 91 SSR 93 (104)
T ss_dssp ECT
T ss_pred CCH
Confidence 543
No 163
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.1e-15 Score=127.03 Aligned_cols=80 Identities=18% Similarity=0.242 Sum_probs=74.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHH----HHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccc
Q 007417 148 KKEHEIFIGGLDRDATQEDVR----KVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCG 223 (604)
Q Consensus 148 ~~~~~vfV~nLp~~~te~dL~----~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~ 223 (604)
.+.++|||+|||+++|+++|+ ++|++||.|.+|+|++++.+ +|||||+|.+.++|.+|++.||+..|.|+.|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 357899999999999999999 99999999999999998765 89999999999999999999999999999999
Q ss_pred cCCCCCC
Q 007417 224 TAPSEDN 230 (604)
Q Consensus 224 v~~~~~~ 230 (604)
|..+.+.
T Consensus 84 V~~a~~~ 90 (96)
T 2dgx_A 84 VSLATGA 90 (96)
T ss_dssp EEECCCS
T ss_pred EEEcCCC
Confidence 9887653
No 164
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=4.4e-16 Score=130.82 Aligned_cols=78 Identities=22% Similarity=0.273 Sum_probs=71.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCC
Q 007417 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (604)
Q Consensus 148 ~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (604)
...++|||+|||+++|+++|+++|++||.| .|+|++++ +++++|||||+|.+.++|++||+ +++..|.++.|.|..+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLN 89 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 467899999999999999999999999955 99999997 89999999999999999999995 7999999999887654
Q ss_pred C
Q 007417 228 E 228 (604)
Q Consensus 228 ~ 228 (604)
.
T Consensus 90 ~ 90 (102)
T 1wez_A 90 S 90 (102)
T ss_dssp C
T ss_pred C
Confidence 4
No 165
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=7.7e-16 Score=132.39 Aligned_cols=77 Identities=22% Similarity=0.372 Sum_probs=73.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCC
Q 007417 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (604)
Q Consensus 150 ~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (604)
.++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+|| .|++..|.|+.|.|..+
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 589999999999999999999999999999999999999999999999999999999999 89999999999988654
No 166
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.1e-15 Score=127.93 Aligned_cols=79 Identities=22% Similarity=0.420 Sum_probs=74.4
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEE-EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCc----cE
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVI-RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGN----SK 401 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~-~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~----~~ 401 (604)
..++|||+|||+.+++++|+++|++||.|. .|.|++++.+++++|||||+|.+.++|.+|+..||+..|.|+. |+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~ 87 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFK 87 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEE
Confidence 357999999999999999999999999999 9999999999999999999999999999999999999999999 66
Q ss_pred EEEe
Q 007417 402 VKLR 405 (604)
Q Consensus 402 v~~~ 405 (604)
|.++
T Consensus 88 v~~a 91 (99)
T 2div_A 88 LNYA 91 (99)
T ss_dssp EEET
T ss_pred Eeec
Confidence 6654
No 167
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.60 E-value=3.3e-16 Score=128.55 Aligned_cols=79 Identities=25% Similarity=0.524 Sum_probs=73.8
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCCCCC
Q 007417 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDN 230 (604)
Q Consensus 151 ~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~~~ 230 (604)
++|||+|||+++|+++|+++|++||.|..|++++++.+++++|||||+|.+.+ |.+|+..|++..|.|+.|.|..+...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999999999999999999999 99999999999999999999887653
No 168
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.60 E-value=1.7e-15 Score=128.56 Aligned_cols=80 Identities=8% Similarity=0.175 Sum_probs=75.8
Q ss_pred ccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEe
Q 007417 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (604)
Q Consensus 326 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~ 405 (604)
...++|||+|||+.+++++|+++|++||.|..|.|+.+. +++++|||||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 346899999999999999999999999999999999998 8999999999999999999999999999999999999886
Q ss_pred e
Q 007417 406 A 406 (604)
Q Consensus 406 ~ 406 (604)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 3
No 169
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3.7e-15 Score=125.57 Aligned_cols=81 Identities=14% Similarity=0.321 Sum_probs=74.1
Q ss_pred ccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEe
Q 007417 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (604)
Q Consensus 326 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~ 405 (604)
...++|||+|||+.+++++|+++|++||.|..|.|+.+.. .++|||||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 3458999999999999999999999999999999998864 38999999999999999999999999999999999886
Q ss_pred eec
Q 007417 406 ARL 408 (604)
Q Consensus 406 ~~~ 408 (604)
...
T Consensus 91 ~~~ 93 (103)
T 2cq3_A 91 TAR 93 (103)
T ss_dssp CSS
T ss_pred ccC
Confidence 443
No 170
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=7.8e-16 Score=129.99 Aligned_cols=82 Identities=28% Similarity=0.514 Sum_probs=77.3
Q ss_pred ccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEe
Q 007417 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (604)
Q Consensus 326 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~ 405 (604)
...++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 34689999999999999999999999999999999999989999999999999999999999999999999999999886
Q ss_pred ee
Q 007417 406 AR 407 (604)
Q Consensus 406 ~~ 407 (604)
..
T Consensus 86 ~~ 87 (104)
T 1p1t_A 86 AS 87 (104)
T ss_dssp TC
T ss_pred CC
Confidence 43
No 171
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=4.6e-16 Score=129.92 Aligned_cols=82 Identities=16% Similarity=0.247 Sum_probs=72.6
Q ss_pred cCCCCEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCC--CeeeCcccc
Q 007417 147 IKKEHEIFIGGLDR-DATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKN--PVICGKRCG 223 (604)
Q Consensus 147 ~~~~~~vfV~nLp~-~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~--~~l~g~~i~ 223 (604)
..++++|||+|||+ ++|+++|+++|++||.|.+|+|+++ ++||||+|.+.++|.+|++.|++ ..|.|++|.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 44789999999999 9999999999999999999999765 58999999999999999998875 469999999
Q ss_pred cCCCCCCCcce
Q 007417 224 TAPSEDNDTLF 234 (604)
Q Consensus 224 v~~~~~~~~l~ 234 (604)
|..+.....|.
T Consensus 86 V~~a~~~~~~~ 96 (102)
T 1x4d_A 86 VHLSQKYKRIK 96 (102)
T ss_dssp EEEECCCTTSS
T ss_pred EEECCCCCCCC
Confidence 98887655543
No 172
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.7e-15 Score=127.26 Aligned_cols=75 Identities=20% Similarity=0.282 Sum_probs=70.1
Q ss_pred ccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEe
Q 007417 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (604)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~ 405 (604)
.++|||+|||+.+|+++|+++|++||.| .|.|++++ +++++|||||+|.+.++|.+||. +|+..|.++.|.|.++
T Consensus 15 ~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 15 GHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLN 89 (102)
T ss_dssp SCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 4789999999999999999999999955 99999997 89999999999999999999995 8999999999998765
No 173
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.2e-15 Score=126.94 Aligned_cols=83 Identities=25% Similarity=0.579 Sum_probs=76.0
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccC
Q 007417 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (604)
Q Consensus 146 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (604)
.....++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+||.. +..|.|+.|.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~l~v~ 88 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEETTEEEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CCeeCCeEEEEE
Confidence 345679999999999999999999999999999999999999999999999999999999999994 668999999988
Q ss_pred CCCCC
Q 007417 226 PSEDN 230 (604)
Q Consensus 226 ~~~~~ 230 (604)
.+...
T Consensus 89 ~a~~~ 93 (103)
T 2cqg_A 89 LPNSK 93 (103)
T ss_dssp CCCTT
T ss_pred ecCCC
Confidence 77653
No 174
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.7e-15 Score=127.80 Aligned_cols=81 Identities=21% Similarity=0.359 Sum_probs=74.1
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCC
Q 007417 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (604)
Q Consensus 147 ~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (604)
....++|||+|||+++|+++|+++|++||.|..|+|+.+ ++++|||||+|.+.++|++|++.|++..|.|+.|.|..
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 346789999999999999999999999999999999654 56899999999999999999999999999999999988
Q ss_pred CCCC
Q 007417 227 SEDN 230 (604)
Q Consensus 227 ~~~~ 230 (604)
+...
T Consensus 96 a~~~ 99 (109)
T 1x4a_A 96 PRSG 99 (109)
T ss_dssp CCCC
T ss_pred cccC
Confidence 7653
No 175
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2e-15 Score=127.45 Aligned_cols=78 Identities=19% Similarity=0.444 Sum_probs=73.9
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCC-CCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEe
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMST-AKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~-g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~ 405 (604)
..++|||+|||+.+++++|+++|++|| |..|.|++++.+ ++++|||||+|.+.++|.+|| .||+..|.|+.|.|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 91 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVA 91 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEc
Confidence 458999999999999999999999999 999999999887 999999999999999999999 89999999999999886
Q ss_pred e
Q 007417 406 A 406 (604)
Q Consensus 406 ~ 406 (604)
.
T Consensus 92 ~ 92 (104)
T 1wi8_A 92 D 92 (104)
T ss_dssp C
T ss_pred c
Confidence 3
No 176
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.60 E-value=1.6e-15 Score=125.84 Aligned_cols=78 Identities=18% Similarity=0.312 Sum_probs=74.1
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEe
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~ 405 (604)
..++|||+|||+.+++++|+++|++||.|..|.|++++. ++++|||||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 15 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 15 ADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp GGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 457999999999999999999999999999999999975 899999999999999999999999999999999999875
No 177
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.59 E-value=2.2e-15 Score=124.10 Aligned_cols=79 Identities=18% Similarity=0.337 Sum_probs=73.8
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEee
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
..++|||+|||+.+++++|+++|++||.|..|.|+++ +++++|||||+|.+.++|.+|+..||+..|.|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 4579999999999999999999999999999999984 78999999999999999999999999999999999998864
Q ss_pred e
Q 007417 407 R 407 (604)
Q Consensus 407 ~ 407 (604)
.
T Consensus 85 ~ 85 (92)
T 2dgv_A 85 N 85 (92)
T ss_dssp C
T ss_pred C
Confidence 4
No 178
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.1e-15 Score=131.09 Aligned_cols=79 Identities=20% Similarity=0.288 Sum_probs=75.0
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEE--------EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCC
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVI--------RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG 398 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~--------~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~ 398 (604)
..++|||+|||+.+++++|+++|++||.|. .|.|+.++.+++++|||||+|.+.++|.+||..||+..|.|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 93 (113)
T 2cpe_A 14 DNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGS 93 (113)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCC
Confidence 457999999999999999999999999999 699999989999999999999999999999999999999999
Q ss_pred ccEEEEe
Q 007417 399 NSKVKLR 405 (604)
Q Consensus 399 ~~~v~~~ 405 (604)
.|.|.++
T Consensus 94 ~l~V~~a 100 (113)
T 2cpe_A 94 KLKVSLA 100 (113)
T ss_dssp ECEEECS
T ss_pred EEEEEEC
Confidence 9988875
No 179
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.59 E-value=1.6e-15 Score=128.33 Aligned_cols=81 Identities=16% Similarity=0.265 Sum_probs=74.5
Q ss_pred CCCCEEEEcCCCCCC------CHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCc-
Q 007417 148 KKEHEIFIGGLDRDA------TQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGK- 220 (604)
Q Consensus 148 ~~~~~vfV~nLp~~~------te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~- 220 (604)
...++|||+|||+.+ |+++|+++|++||.|..|+|+ +.+|+++|||||+|.+.++|.+|+..|++..|.|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 357899999999999 889999999999999999998 46899999999999999999999999999999999
Q ss_pred ccccCCCCCC
Q 007417 221 RCGTAPSEDN 230 (604)
Q Consensus 221 ~i~v~~~~~~ 230 (604)
.|.|..+.+.
T Consensus 91 ~l~V~~a~~~ 100 (105)
T 2nlw_A 91 TFRVNLFTDF 100 (105)
T ss_dssp EEEEECSCCC
T ss_pred eEEEEEcchH
Confidence 9998887653
No 180
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.3e-15 Score=126.60 Aligned_cols=79 Identities=10% Similarity=0.183 Sum_probs=73.0
Q ss_pred cccccccCCCCcccChhhHH----hhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEE
Q 007417 327 HVKTVFLDGVPPHWKENQIR----DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 402 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~----~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v 402 (604)
..++|||+|||+.+++++|+ ++|++||.|..|.|+.++.+ +|||||+|.+.++|.+|+..|||..|.|+.|+|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 35789999999999999999 99999999999999998765 899999999999999999999999999999999
Q ss_pred EEeeec
Q 007417 403 KLRARL 408 (604)
Q Consensus 403 ~~~~~~ 408 (604)
.++...
T Consensus 85 ~~a~~~ 90 (96)
T 2dgx_A 85 SLATGA 90 (96)
T ss_dssp EECCCS
T ss_pred EEcCCC
Confidence 887443
No 181
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.59 E-value=1.8e-15 Score=132.15 Aligned_cols=82 Identities=17% Similarity=0.330 Sum_probs=77.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCC
Q 007417 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (604)
Q Consensus 148 ~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (604)
...++|||+|||+++|+++|+++|++||.|..|+|+.++ +++++|||||+|.+.++|.+|+..|++..|.|+.|.|..+
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 467899999999999999999999999999999999998 8999999999999999999999999999999999999877
Q ss_pred CCC
Q 007417 228 EDN 230 (604)
Q Consensus 228 ~~~ 230 (604)
...
T Consensus 112 ~~~ 114 (124)
T 2kt5_A 112 ASQ 114 (124)
T ss_dssp CCT
T ss_pred CCC
Confidence 653
No 182
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.59 E-value=1.8e-15 Score=125.04 Aligned_cols=78 Identities=21% Similarity=0.214 Sum_probs=70.3
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCe--eeCcccc
Q 007417 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPV--ICGKRCG 223 (604)
Q Consensus 146 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~--l~g~~i~ 223 (604)
...++++|||+|||+++|+++|+++|++||.|.+|++++ .||||||+|.+.++|.+|++.|++.. |.|++|.
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 345789999999999999999999999999999999974 47999999999999999999998765 7799999
Q ss_pred cCCCCC
Q 007417 224 TAPSED 229 (604)
Q Consensus 224 v~~~~~ 229 (604)
|..+..
T Consensus 91 V~~S~~ 96 (100)
T 3r27_A 91 VNYSTS 96 (100)
T ss_dssp EEECSC
T ss_pred EEeccc
Confidence 887764
No 183
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.59 E-value=1.7e-15 Score=137.51 Aligned_cols=80 Identities=16% Similarity=0.287 Sum_probs=76.1
Q ss_pred ccccccCCCCcccChhhHHhhhcccC--CEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEe
Q 007417 328 VKTVFLDGVPPHWKENQIRDQIKGYG--DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (604)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~F~~~G--~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~ 405 (604)
.++|||+|||+.+|+++|+++|++|| .|..|+|+.++.+|+++|||||+|.+.++|.+||..|||..|.|+.|.|.++
T Consensus 55 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a 134 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPA 134 (156)
T ss_dssp -CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEc
Confidence 47999999999999999999999999 9999999999999999999999999999999999999999999999999986
Q ss_pred ee
Q 007417 406 AR 407 (604)
Q Consensus 406 ~~ 407 (604)
..
T Consensus 135 ~~ 136 (156)
T 3n9u_C 135 TR 136 (156)
T ss_dssp CH
T ss_pred CC
Confidence 43
No 184
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=1.3e-15 Score=128.94 Aligned_cols=79 Identities=16% Similarity=0.392 Sum_probs=73.9
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEee
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
..++|||+|||+.+++++|+++|++||.|..|.|++++.+++++|||||+|.+.++|.+||.. |+..|.|+.|.|.++.
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a~ 93 (105)
T 2dh8_A 15 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPCT 93 (105)
T ss_dssp SSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEcc
Confidence 457999999999999999999999999999999999999999999999999999999999998 9999999987776653
No 185
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.59 E-value=6.4e-16 Score=122.14 Aligned_cols=74 Identities=16% Similarity=0.381 Sum_probs=71.0
Q ss_pred ccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEE
Q 007417 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (604)
Q Consensus 330 ~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~ 404 (604)
+|||+|||+.+++++|+++|++||.|..|.++.++.+++++|||||+|.+.++|.+|++ ||+..|.|+.|.|.+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 74 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKK 74 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEEC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEe
Confidence 58999999999999999999999999999999999899999999999999999999998 999999999998875
No 186
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.9e-15 Score=128.75 Aligned_cols=83 Identities=20% Similarity=0.402 Sum_probs=76.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCC-eEEEEEe-ecCCCCCCcceEEEEEeehHHHHHHHHhcC--CCeeeCcccc
Q 007417 148 KKEHEIFIGGLDRDATQEDVRKVFERIGE-VIEVRLH-KNFSTNRNKGYAFVKFANKEHAKRALTEMK--NPVICGKRCG 223 (604)
Q Consensus 148 ~~~~~vfV~nLp~~~te~dL~~~F~~~G~-V~~v~i~-~d~~tg~~kG~afV~F~~~e~A~~Al~~l~--~~~l~g~~i~ 223 (604)
.+.++|||+|||+++|+++|+++|++||. |..|.|+ .++.+++++|||||+|.+.++|.+|+..|+ +..|.|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 46789999999999999999999999998 9999998 888889999999999999999999999996 5899999999
Q ss_pred cCCCCCC
Q 007417 224 TAPSEDN 230 (604)
Q Consensus 224 v~~~~~~ 230 (604)
|.++.+.
T Consensus 86 V~~a~~~ 92 (109)
T 2dis_A 86 VDWAEPE 92 (109)
T ss_dssp EEESCSS
T ss_pred EEEcCCC
Confidence 9877653
No 187
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.59 E-value=1.6e-15 Score=123.78 Aligned_cols=79 Identities=11% Similarity=0.264 Sum_probs=74.5
Q ss_pred ccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCC-cceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEee
Q 007417 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAK-RKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~-~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
.++|||+|||..+++++|+++|++||.|..|.|+.+..++. ++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL 83 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence 47899999999999999999999999999999999987766 89999999999999999999999999999999999873
No 188
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=6.5e-16 Score=132.81 Aligned_cols=79 Identities=18% Similarity=0.174 Sum_probs=73.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCe-EEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCC
Q 007417 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEV-IEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (604)
Q Consensus 148 ~~~~~vfV~nLp~~~te~dL~~~F~~~G~V-~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (604)
...++|||+|||+++|+++|+++|++||.| ..|+|++++ +++++|||||+|.+.++|.+||.. ++..|.|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 467999999999999999999999999999 899999998 899999999999999999999997 99999999998766
Q ss_pred CC
Q 007417 227 SE 228 (604)
Q Consensus 227 ~~ 228 (604)
+.
T Consensus 91 a~ 92 (114)
T 2cpy_A 91 VT 92 (114)
T ss_dssp EC
T ss_pred CC
Confidence 54
No 189
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.59 E-value=1.9e-15 Score=123.05 Aligned_cols=78 Identities=14% Similarity=0.334 Sum_probs=72.8
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEe
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~ 405 (604)
..++|||+|||+.+++++|+++|++||.|..|.|++++.+++++|||||+|.+.++|.+|++ +++..|.|+.|.|.++
T Consensus 10 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 10 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp CTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 45799999999999999999999999999999999999999999999999999999999996 6888999999888753
No 190
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.59 E-value=1.7e-15 Score=123.92 Aligned_cols=78 Identities=18% Similarity=0.390 Sum_probs=74.5
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEe
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~ 405 (604)
..++|||+|||+.+++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|.+|+ .||+..|.|+.|.|.++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a 82 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPK 82 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEET
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEc
Confidence 3579999999999999999999999999999999999989999999999999999999999 89999999999999875
No 191
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.59 E-value=9.1e-16 Score=134.04 Aligned_cols=80 Identities=18% Similarity=0.343 Sum_probs=75.6
Q ss_pred ccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEe
Q 007417 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (604)
Q Consensus 326 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~ 405 (604)
...++|||+|||+.+++++|+++|++||.|..|.|++++.++.++|||||+|.+.++|.+|+ .||+..|.|+.|.|.++
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 34689999999999999999999999999999999999989999999999999999999999 79999999999999876
Q ss_pred e
Q 007417 406 A 406 (604)
Q Consensus 406 ~ 406 (604)
.
T Consensus 113 ~ 113 (124)
T 2jwn_A 113 R 113 (124)
T ss_dssp S
T ss_pred C
Confidence 3
No 192
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.59 E-value=1.8e-15 Score=132.10 Aligned_cols=79 Identities=22% Similarity=0.490 Sum_probs=75.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCCCC
Q 007417 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSED 229 (604)
Q Consensus 150 ~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~~ 229 (604)
.++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|+ .|++..|.|+.|.|.++..
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 589999999999999999999999999999999999999999999999999999999999 7999999999999987754
No 193
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.59 E-value=2.4e-15 Score=132.04 Aligned_cols=80 Identities=14% Similarity=0.260 Sum_probs=76.1
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEee
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
..++|||+|||+.+++++|+++|++||.|..|.|++++.+++++|||||+|.+.++|.+||..||+..|.|+.|.|.++.
T Consensus 45 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~ 124 (129)
T 2kxn_B 45 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSI 124 (129)
T ss_dssp CSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999988764
No 194
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.9e-15 Score=130.42 Aligned_cols=80 Identities=23% Similarity=0.488 Sum_probs=75.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCCCC
Q 007417 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSED 229 (604)
Q Consensus 150 ~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~~ 229 (604)
.++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+||.. ++..|.|+.|.|..+..
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 48999999999999999999999999999999999999999999999999999999999997 99999999999988765
Q ss_pred C
Q 007417 230 N 230 (604)
Q Consensus 230 ~ 230 (604)
.
T Consensus 106 ~ 106 (116)
T 1x4b_A 106 R 106 (116)
T ss_dssp C
T ss_pred C
Confidence 3
No 195
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=1.3e-15 Score=130.18 Aligned_cols=87 Identities=20% Similarity=0.350 Sum_probs=78.6
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHH---HHhhccCCeEEEEEeecCCCC---CCcceEEEEEeehHHHHHHHHhcCCCeeeC
Q 007417 146 KIKKEHEIFIGGLDRDATQEDVR---KVFERIGEVIEVRLHKNFSTN---RNKGYAFVKFANKEHAKRALTEMKNPVICG 219 (604)
Q Consensus 146 ~~~~~~~vfV~nLp~~~te~dL~---~~F~~~G~V~~v~i~~d~~tg---~~kG~afV~F~~~e~A~~Al~~l~~~~l~g 219 (604)
.....++|||+|||+++|+++|+ ++|++||+|..|+|++++.++ +++|||||+|.+.++|++|++.|++..|.|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 34467899999999999999999 999999999999999987754 566999999999999999999999999999
Q ss_pred cccccCCCCCCCc
Q 007417 220 KRCGTAPSEDNDT 232 (604)
Q Consensus 220 ~~i~v~~~~~~~~ 232 (604)
+.|.|..+....+
T Consensus 91 r~l~V~~a~~k~~ 103 (111)
T 2cpi_A 91 RTLKASLGTTKYC 103 (111)
T ss_dssp EEEEEESCCCCSC
T ss_pred EEEEEEecccccc
Confidence 9999998876554
No 196
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.58 E-value=1.7e-15 Score=131.08 Aligned_cols=79 Identities=22% Similarity=0.410 Sum_probs=75.9
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEe
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~ 405 (604)
..++|||+|||+.+++++|+++|++||.|..|.|++++.+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.++
T Consensus 39 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 39 EGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp CSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 4589999999999999999999999999999999999999999999999999999999999999999999999999875
No 197
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.58 E-value=1.4e-15 Score=127.50 Aligned_cols=81 Identities=17% Similarity=0.426 Sum_probs=73.1
Q ss_pred hccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecC-CCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEE
Q 007417 325 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNM-STAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 403 (604)
Q Consensus 325 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~-~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~ 403 (604)
....++|||+|||+.+++++|+++|++|| |..|.|++++ .+++++|||||+|.+.++|.+|+ .||+..|.|+.|.|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 34568999999999999999999999999 9999999998 68999999999999999999999 899999999999998
Q ss_pred Eeee
Q 007417 404 LRAR 407 (604)
Q Consensus 404 ~~~~ 407 (604)
++..
T Consensus 94 ~a~~ 97 (100)
T 2j76_E 94 VADQ 97 (100)
T ss_dssp ECCC
T ss_pred eccC
Confidence 7643
No 198
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.58 E-value=7.4e-16 Score=127.80 Aligned_cols=78 Identities=14% Similarity=0.196 Sum_probs=74.5
Q ss_pred ccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEe
Q 007417 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (604)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~ 405 (604)
.++|||+|||+.+++++|+++|++||.|..+.++.++.+++++|||||+|.++++|.+|++.||+..|.|+.|.|.++
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 479999999999999999999999999999999999899999999999999999999999999999999999999865
No 199
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.58 E-value=1.2e-15 Score=134.59 Aligned_cols=81 Identities=16% Similarity=0.279 Sum_probs=75.8
Q ss_pred ccccccccCCCCcccChhhHHhhhcccCCEEE--EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCC----eeCCCc
Q 007417 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIR--IVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK----EFSDGN 399 (604)
Q Consensus 326 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~--v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~----~~~g~~ 399 (604)
...++|||+|||+.+|+++|+++|++||.|.. |+|++++.+++++|||||+|.+. +|.+|+..||+. .|.|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 34579999999999999999999999999977 99999999999999999999999 999999999999 999999
Q ss_pred cEEEEeee
Q 007417 400 SKVKLRAR 407 (604)
Q Consensus 400 ~~v~~~~~ 407 (604)
|.|.++..
T Consensus 100 l~V~~a~~ 107 (131)
T 2m2b_A 100 INVEFAKG 107 (131)
T ss_dssp CCCEECCC
T ss_pred EEEEECCC
Confidence 99988744
No 200
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=2e-15 Score=126.27 Aligned_cols=86 Identities=30% Similarity=0.531 Sum_probs=78.8
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccC
Q 007417 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (604)
Q Consensus 146 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (604)
...+.++|||+|||+++|+++|+++|++||.|..|+|+++ +|||||+|.+.++|.+|++.|++..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 3456789999999999999999999999999999999743 7999999999999999999999999999999999
Q ss_pred CCCCCCcceecc
Q 007417 226 PSEDNDTLFVGN 237 (604)
Q Consensus 226 ~~~~~~~l~v~n 237 (604)
.+.+...+.+++
T Consensus 85 ~a~~~~~~~~g~ 96 (99)
T 2cpj_A 85 FACHSASLTSGP 96 (99)
T ss_dssp ESSCCSCCCCCC
T ss_pred EcCCCCCCCCCC
Confidence 998888877764
No 201
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=1.9e-15 Score=124.27 Aligned_cols=80 Identities=21% Similarity=0.396 Sum_probs=74.6
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCC
Q 007417 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (604)
Q Consensus 147 ~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (604)
....++|||+|||+++|+++|+++|++| .|..|+|+++ .+++++|||||+|.+.++|.+|+. |++..|.|+.|.|..
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 3467999999999999999999999999 9999999999 789999999999999999999999 999999999998876
Q ss_pred CCC
Q 007417 227 SED 229 (604)
Q Consensus 227 ~~~ 229 (604)
+..
T Consensus 84 a~~ 86 (91)
T 2dgw_A 84 EKS 86 (91)
T ss_dssp ESS
T ss_pred CCc
Confidence 654
No 202
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.58 E-value=7.2e-16 Score=121.80 Aligned_cols=74 Identities=30% Similarity=0.601 Sum_probs=69.8
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCC
Q 007417 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (604)
Q Consensus 152 ~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (604)
+|||+|||+++|+++|+++|++||+|..|.+++++.+++++|||||+|.+.++|.+|+.. ++..|.|+.|.|..
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~ 74 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKV 74 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 699999999999999999999999999999999999999999999999999999999995 88889999988754
No 203
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=1.4e-15 Score=128.89 Aligned_cols=76 Identities=25% Similarity=0.396 Sum_probs=70.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCCC
Q 007417 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (604)
Q Consensus 150 ~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~ 228 (604)
.++|||+|||+++|+++|+++|++| .|..|+|++++. |+++|||||+|.+.++|.+|| .+++..|.|+.|.|..+.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4699999999999999999999999 899999999975 999999999999999999999 589999999998876653
No 204
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=8.2e-16 Score=128.36 Aligned_cols=80 Identities=15% Similarity=0.215 Sum_probs=75.5
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEee
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
..++|||+|||+.+++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|.+|++.||+..|.|+.|.|.++.
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 93 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGS 93 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcC
Confidence 35789999999999999999999999999988899998999999999999999999999999999999999999998863
No 205
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.58 E-value=1.3e-15 Score=121.17 Aligned_cols=72 Identities=13% Similarity=0.124 Sum_probs=68.1
Q ss_pred ccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEe
Q 007417 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (604)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~ 405 (604)
+..|+|+||++.+|+++|+++|.+||+|..+++.. ++|||||+|.+.++|.+|++.||+..+.|+.|+|.++
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 46899999999999999999999999999999965 5999999999999999999999999999999999876
No 206
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.3e-15 Score=129.85 Aligned_cols=80 Identities=18% Similarity=0.374 Sum_probs=75.0
Q ss_pred hccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEE
Q 007417 325 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (604)
Q Consensus 325 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~ 404 (604)
....++|||+|||+.+++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|.+||.. |+..|.|+.|.|.+
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 44568999999999999999999999999999999999999999999999999999999999987 99999999988876
Q ss_pred e
Q 007417 405 R 405 (604)
Q Consensus 405 ~ 405 (604)
+
T Consensus 103 a 103 (116)
T 1x4b_A 103 A 103 (116)
T ss_dssp C
T ss_pred C
Confidence 5
No 207
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.58 E-value=7.6e-16 Score=135.92 Aligned_cols=80 Identities=19% Similarity=0.201 Sum_probs=74.3
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCC---eEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccc
Q 007417 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGE---VIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCG 223 (604)
Q Consensus 147 ~~~~~~vfV~nLp~~~te~dL~~~F~~~G~---V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~ 223 (604)
....++|||+|||+++|+++|+++|++||. |..|+|++++. ++++|||||+|.+.++|++||+ +++..|.|+.|.
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 346789999999999999999999999999 89999999987 9999999999999999999999 999999999998
Q ss_pred cCCCC
Q 007417 224 TAPSE 228 (604)
Q Consensus 224 v~~~~ 228 (604)
|..+.
T Consensus 119 V~~a~ 123 (136)
T 2hgl_A 119 VFKSH 123 (136)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 77653
No 208
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.7e-15 Score=127.86 Aligned_cols=83 Identities=16% Similarity=0.323 Sum_probs=76.2
Q ss_pred ccccccCCCCcccChhhHHhhhcccCC-EEEEEEe-ecCCCCCcceEEEEEeCCHHHHHHHHHHhc--CCeeCCCccEEE
Q 007417 328 VKTVFLDGVPPHWKENQIRDQIKGYGD-VIRIVLA-RNMSTAKRKDYGFIDFSTHEAAVACINAIN--NKEFSDGNSKVK 403 (604)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~F~~~G~-v~~v~i~-~d~~~g~~~G~afV~F~~~~~A~~A~~~ln--g~~~~g~~~~v~ 403 (604)
.++|||+|||+.+++++|+++|++||. |..|.|+ .++.+++++|||||+|.++++|.+|+..|| +..|.|+.|.|.
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~ 87 (109)
T 2dis_A 8 NCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVD 87 (109)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEE
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEE
Confidence 478999999999999999999999998 9999998 788889999999999999999999999996 589999999999
Q ss_pred EeeecCC
Q 007417 404 LRARLSN 410 (604)
Q Consensus 404 ~~~~~~~ 410 (604)
++.....
T Consensus 88 ~a~~~~~ 94 (109)
T 2dis_A 88 WAEPEID 94 (109)
T ss_dssp ESCSSCS
T ss_pred EcCCCCC
Confidence 8765443
No 209
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.58 E-value=4.1e-15 Score=125.30 Aligned_cols=74 Identities=23% Similarity=0.457 Sum_probs=68.0
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEee
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
..++|||+|||+.+|+++|+++|++||.|..|.|+ +|||||+|.+.++|.+||..||+..|.|+.|.|.++.
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 81 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 81 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcC
Confidence 45799999999999999999999999999999986 4599999999999999999999999999999988864
Q ss_pred ec
Q 007417 407 RL 408 (604)
Q Consensus 407 ~~ 408 (604)
..
T Consensus 82 ~~ 83 (103)
T 2dgu_A 82 PP 83 (103)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 210
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=5.9e-16 Score=125.56 Aligned_cols=77 Identities=21% Similarity=0.400 Sum_probs=72.8
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEE
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 403 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~ 403 (604)
..++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|||..|.|+.+++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 80 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQS 80 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeec
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999887664
No 211
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=3e-15 Score=128.66 Aligned_cols=75 Identities=13% Similarity=0.357 Sum_probs=69.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccc
Q 007417 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCG 223 (604)
Q Consensus 148 ~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~ 223 (604)
...++|||+|||+++|+++|+++|++||.|..|+|++++ +++++|||||+|.+.++|.+|+..|++..|.++.+.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~ 97 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGV 97 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccc
Confidence 467899999999999999999999999999999999998 899999999999999999999999999999665544
No 212
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.58 E-value=9.7e-16 Score=132.48 Aligned_cols=79 Identities=20% Similarity=0.201 Sum_probs=73.4
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCC---eEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccc
Q 007417 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGE---VIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCG 223 (604)
Q Consensus 147 ~~~~~~vfV~nLp~~~te~dL~~~F~~~G~---V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~ 223 (604)
....++|||+|||+++|+++|+++|++||. |..|+|++++. ++++|||||+|.+.++|++||+ +++..|.|+.|.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 346789999999999999999999999999 89999999977 9999999999999999999999 999999999988
Q ss_pred cCCC
Q 007417 224 TAPS 227 (604)
Q Consensus 224 v~~~ 227 (604)
|..+
T Consensus 92 V~~a 95 (118)
T 2db1_A 92 VFKS 95 (118)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 7654
No 213
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.58 E-value=2.9e-15 Score=133.77 Aligned_cols=78 Identities=21% Similarity=0.534 Sum_probs=75.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCC
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (604)
..++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|++.|++..|.|+.|+|..
T Consensus 62 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 62 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 579999999999999999999999999999999999999999999999999999999999999999999999998765
No 214
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.58 E-value=8.9e-16 Score=136.01 Aligned_cols=82 Identities=24% Similarity=0.455 Sum_probs=77.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCC
Q 007417 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (604)
Q Consensus 148 ~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (604)
...++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|++|+..|++..|.|+.|.|..+
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CC
Q 007417 228 ED 229 (604)
Q Consensus 228 ~~ 229 (604)
..
T Consensus 125 ~~ 126 (135)
T 2lea_A 125 RY 126 (135)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 215
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.58 E-value=5.5e-16 Score=137.30 Aligned_cols=76 Identities=20% Similarity=0.283 Sum_probs=70.6
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEe
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~ 405 (604)
..++|||+|||+.+|+++|+++|++|| |+.|.|++++. ++++|||||+|.+.++|.+|| .+|+..|.++.|.|.++
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 457999999999999999999999999 66999999976 999999999999999999999 79999999999888765
No 216
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=5.2e-15 Score=124.67 Aligned_cols=79 Identities=18% Similarity=0.312 Sum_probs=72.8
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEee
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
..++|||+|||+.+++++|+++|++||.|..|.|+++..+ ++|||||+|.+.++|.+|+..||+..|.|+.|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 14 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 4579999999999999999999999999999999998543 68999999999999999999999999999999988864
Q ss_pred e
Q 007417 407 R 407 (604)
Q Consensus 407 ~ 407 (604)
.
T Consensus 92 ~ 92 (103)
T 2cqi_A 92 T 92 (103)
T ss_dssp C
T ss_pred C
Confidence 4
No 217
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.57 E-value=6.8e-16 Score=126.67 Aligned_cols=81 Identities=16% Similarity=0.376 Sum_probs=73.8
Q ss_pred cccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEeeec
Q 007417 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARL 408 (604)
Q Consensus 329 ~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~~~ 408 (604)
++|||+|||..+++++|+++|++||.|..|.|++++.+++++|||||+|.+.+ |.+|+..||+..|.|+.|.|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999999999999999999999 99999999999999999999987554
Q ss_pred CC
Q 007417 409 SN 410 (604)
Q Consensus 409 ~~ 410 (604)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 33
No 218
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=2.6e-15 Score=125.35 Aligned_cols=76 Identities=14% Similarity=0.205 Sum_probs=68.8
Q ss_pred cccccccCCCCc-ccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCC--eeCCCccEEE
Q 007417 327 HVKTVFLDGVPP-HWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK--EFSDGNSKVK 403 (604)
Q Consensus 327 ~~~~l~v~nLp~-~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~--~~~g~~~~v~ 403 (604)
..++|||+|||+ .+|+++|+++|++||.|..|.|+++ +|||||+|.+.++|.+||..||+. .|.|+.|.|.
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 87 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVH 87 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEE
Confidence 357899999999 9999999999999999999999865 589999999999999999999864 5999999999
Q ss_pred Eeeec
Q 007417 404 LRARL 408 (604)
Q Consensus 404 ~~~~~ 408 (604)
++...
T Consensus 88 ~a~~~ 92 (102)
T 1x4d_A 88 LSQKY 92 (102)
T ss_dssp EECCC
T ss_pred ECCCC
Confidence 87543
No 219
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=1.2e-15 Score=121.26 Aligned_cols=76 Identities=16% Similarity=0.360 Sum_probs=72.7
Q ss_pred cccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEe
Q 007417 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (604)
Q Consensus 329 ~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~ 405 (604)
++|||+|||+.+++++|+++|++||.|..|.+++++.+++++|||||+|.+.++|.+|+..++ ..|.|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999999899999999999999999999999999 9999999999875
No 220
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.57 E-value=4.2e-15 Score=129.79 Aligned_cols=87 Identities=7% Similarity=0.134 Sum_probs=79.7
Q ss_pred ccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEe
Q 007417 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (604)
Q Consensus 326 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~ 405 (604)
...++|||+|||+.+++++|+++|++||.|..|.|+.+. +++++|||||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 346899999999999999999999999999999999998 8999999999999999999999999999999999999998
Q ss_pred eecCCCCC
Q 007417 406 ARLSNPMP 413 (604)
Q Consensus 406 ~~~~~~~~ 413 (604)
.....+.+
T Consensus 112 ~~~~~~~~ 119 (124)
T 2kt5_A 112 ASQIDLEH 119 (124)
T ss_dssp CCTTCCCC
T ss_pred CCCCCCCC
Confidence 66544433
No 221
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.57 E-value=1.2e-15 Score=129.61 Aligned_cols=80 Identities=16% Similarity=0.193 Sum_probs=74.1
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCC---eEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccc
Q 007417 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGE---VIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCG 223 (604)
Q Consensus 147 ~~~~~~vfV~nLp~~~te~dL~~~F~~~G~---V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~ 223 (604)
....++|||+|||+++|+++|+++|+.||. |..|+|++++. |+++|||||+|.+.++|.+||. +++..|.|+.|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 346789999999999999999999999998 89999999987 9999999999999999999999 999999999998
Q ss_pred cCCCC
Q 007417 224 TAPSE 228 (604)
Q Consensus 224 v~~~~ 228 (604)
|..+.
T Consensus 86 V~~a~ 90 (107)
T 2lmi_A 86 VYEIN 90 (107)
T ss_dssp CEECC
T ss_pred EEECC
Confidence 87654
No 222
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.4e-15 Score=129.22 Aligned_cols=81 Identities=12% Similarity=0.248 Sum_probs=76.2
Q ss_pred ccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEe
Q 007417 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (604)
Q Consensus 326 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~ 405 (604)
...++|||+|||+.+++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|.+|| .||+..|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 34679999999999999999999999999999999999999999999999999999999999 99999999999999886
Q ss_pred ee
Q 007417 406 AR 407 (604)
Q Consensus 406 ~~ 407 (604)
..
T Consensus 102 ~~ 103 (114)
T 2cq4_A 102 QA 103 (114)
T ss_dssp HH
T ss_pred CC
Confidence 44
No 223
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.57 E-value=2.7e-15 Score=141.85 Aligned_cols=80 Identities=21% Similarity=0.562 Sum_probs=74.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCCC
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~ 228 (604)
..++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||.. ++..|.|+.|.|..+.
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKAL 181 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecC
Confidence 348999999999999999999999999999999999998999999999999999999999986 7899999999987765
Q ss_pred C
Q 007417 229 D 229 (604)
Q Consensus 229 ~ 229 (604)
+
T Consensus 182 ~ 182 (196)
T 1l3k_A 182 S 182 (196)
T ss_dssp -
T ss_pred C
Confidence 4
No 224
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.3e-15 Score=125.73 Aligned_cols=74 Identities=16% Similarity=0.305 Sum_probs=67.6
Q ss_pred ccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcC--CeeCCCccEEEEe
Q 007417 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINN--KEFSDGNSKVKLR 405 (604)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng--~~~~g~~~~v~~~ 405 (604)
.++|||+|||+.+|+++|+++|++||.|..|.|+++ ||||||+|.+.++|.+|++.|++ ..|.|+.|.|.++
T Consensus 16 ~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A 89 (105)
T 1sjq_A 16 SRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 89 (105)
T ss_dssp CCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 579999999999999999999999999999999875 79999999999999999998864 7899999888876
Q ss_pred ee
Q 007417 406 AR 407 (604)
Q Consensus 406 ~~ 407 (604)
..
T Consensus 90 ~~ 91 (105)
T 1sjq_A 90 NH 91 (105)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 225
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=5.2e-15 Score=123.61 Aligned_cols=77 Identities=19% Similarity=0.191 Sum_probs=69.5
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhc--CCCeeeCccccc
Q 007417 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM--KNPVICGKRCGT 224 (604)
Q Consensus 147 ~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l--~~~~l~g~~i~v 224 (604)
..+.++|||+|||+++|+++|+++|++||.|..|+|+++ +|||||+|.+.++|.+|++.| ++..|.|+.|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 346799999999999999999999999999999999754 899999999999999999976 467899999998
Q ss_pred CCCCC
Q 007417 225 APSED 229 (604)
Q Consensus 225 ~~~~~ 229 (604)
..+..
T Consensus 86 ~~a~~ 90 (101)
T 2cq1_A 86 QYSNH 90 (101)
T ss_dssp EECSC
T ss_pred EEcCc
Confidence 87754
No 226
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=4.5e-15 Score=125.25 Aligned_cols=78 Identities=15% Similarity=0.223 Sum_probs=72.2
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEE-EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEe
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIR-IVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~-v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~ 405 (604)
..++|||+|||+.+|+++|+++|++||.|.. |.|+.+ .+++++|||||+|.++++|.+||.. |+..|.|+.|.|.++
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 3579999999999999999999999999987 888888 7899999999999999999999997 999999999998775
Q ss_pred e
Q 007417 406 A 406 (604)
Q Consensus 406 ~ 406 (604)
.
T Consensus 92 ~ 92 (104)
T 1wg5_A 92 S 92 (104)
T ss_dssp C
T ss_pred C
Confidence 3
No 227
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=8.3e-15 Score=123.42 Aligned_cols=79 Identities=18% Similarity=0.418 Sum_probs=72.9
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEee
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
..++|||+|||+.+++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|.+||. ++..|.|+.|.|.++.
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a~ 91 (103)
T 2cqg_A 14 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLPN 91 (103)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECCC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEecC
Confidence 45789999999999999999999999999999999999999999999999999999999998 4779999998888764
Q ss_pred e
Q 007417 407 R 407 (604)
Q Consensus 407 ~ 407 (604)
.
T Consensus 92 ~ 92 (103)
T 2cqg_A 92 S 92 (103)
T ss_dssp T
T ss_pred C
Confidence 3
No 228
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=3.5e-15 Score=127.04 Aligned_cols=83 Identities=20% Similarity=0.435 Sum_probs=75.9
Q ss_pred hccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCccccc
Q 007417 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (604)
Q Consensus 145 ~~~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v 224 (604)
......++|||+|||+++|+++|+++|++||.|..|+|++++ +.++|||||+|.+.++|.+|+..|++..|.|+.|.|
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 101 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 101 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 344578999999999999999999999999999999999885 458999999999999999999999999999999999
Q ss_pred CCCCC
Q 007417 225 APSED 229 (604)
Q Consensus 225 ~~~~~ 229 (604)
..+..
T Consensus 102 ~~a~~ 106 (109)
T 2err_A 102 NNATA 106 (109)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 87764
No 229
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=7.2e-15 Score=125.16 Aligned_cols=76 Identities=16% Similarity=0.368 Sum_probs=70.6
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEe
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~ 405 (604)
..++|||+|||+.+++++|+++|++||.|..|.|..+ +.++|||||+|.+.++|.+||+.||+..|.|+.|.|.++
T Consensus 21 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 21 NDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 4579999999999999999999999999999999654 568999999999999999999999999999999988875
No 230
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=4.5e-15 Score=126.85 Aligned_cols=79 Identities=18% Similarity=0.338 Sum_probs=72.6
Q ss_pred ccccccCCCCcccChhhHH---hhhcccCCEEEEEEeecCCCC---CcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccE
Q 007417 328 VKTVFLDGVPPHWKENQIR---DQIKGYGDVIRIVLARNMSTA---KRKDYGFIDFSTHEAAVACINAINNKEFSDGNSK 401 (604)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~---~~F~~~G~v~~v~i~~d~~~g---~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~ 401 (604)
.++|||+|||+.+++++|+ ++|++||.|..|.|+++..++ +++|||||+|.+.++|.+||..||+..|.|+.|.
T Consensus 15 ~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~ 94 (111)
T 2cpi_A 15 KNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLK 94 (111)
T ss_dssp SSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEE
Confidence 4789999999999999999 999999999999999987654 5669999999999999999999999999999988
Q ss_pred EEEee
Q 007417 402 VKLRA 406 (604)
Q Consensus 402 v~~~~ 406 (604)
|.++.
T Consensus 95 V~~a~ 99 (111)
T 2cpi_A 95 ASLGT 99 (111)
T ss_dssp EESCC
T ss_pred EEecc
Confidence 87753
No 231
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=7.8e-16 Score=134.44 Aligned_cols=80 Identities=19% Similarity=0.267 Sum_probs=73.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCC
Q 007417 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (604)
Q Consensus 148 ~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (604)
...++|||+|||+++|+++|+++|++||.|..+.++.+..+++++|||||+|.+.++|.+||. |++..|.|+.|.|..+
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 357899999999999999999999999999987777777899999999999999999999999 9999999999987765
Q ss_pred C
Q 007417 228 E 228 (604)
Q Consensus 228 ~ 228 (604)
.
T Consensus 102 ~ 102 (124)
T 1wel_A 102 T 102 (124)
T ss_dssp C
T ss_pred C
Confidence 3
No 232
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=3.9e-15 Score=127.52 Aligned_cols=78 Identities=23% Similarity=0.242 Sum_probs=70.4
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcC--CCeeeCcccc
Q 007417 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMK--NPVICGKRCG 223 (604)
Q Consensus 146 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~--~~~l~g~~i~ 223 (604)
...++++|||+|||+++|+++|+++|++||.|.+|+|+++ +|||||+|.+.++|.+|++.|+ +..|.|+.|.
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 3456899999999999999999999999999999999865 7999999999999999999887 4689999999
Q ss_pred cCCCCC
Q 007417 224 TAPSED 229 (604)
Q Consensus 224 v~~~~~ 229 (604)
|..+..
T Consensus 101 V~~a~~ 106 (119)
T 2ad9_A 101 IQFSNH 106 (119)
T ss_dssp EEECSS
T ss_pred EEEccC
Confidence 987754
No 233
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.56 E-value=4.3e-15 Score=128.95 Aligned_cols=79 Identities=24% Similarity=0.347 Sum_probs=71.2
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeE--EEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccc
Q 007417 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVI--EVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCG 223 (604)
Q Consensus 146 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~--~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~ 223 (604)
.....++|||+|||+++|+++|+++|++| .|+ .|+|++++. |+++|||||+|.+.++|++||+. ++..|.|+.|.
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~ 114 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIE 114 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEE
Confidence 34467899999999999999999999999 676 999999987 99999999999999999999985 77899999998
Q ss_pred cCCC
Q 007417 224 TAPS 227 (604)
Q Consensus 224 v~~~ 227 (604)
|..+
T Consensus 115 V~~a 118 (126)
T 2hgm_A 115 VFKS 118 (126)
T ss_dssp CEEE
T ss_pred EEEC
Confidence 7654
No 234
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=1e-14 Score=122.63 Aligned_cols=76 Identities=11% Similarity=0.240 Sum_probs=68.3
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCC--eeCCCccEEEE
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK--EFSDGNSKVKL 404 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~--~~~g~~~~v~~ 404 (604)
..++|||+|||+.+++++|+++|++||.|..|.|+++ ||||||+|.+.++|.+|+..||+. .|.|+.|.|.+
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~ 87 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNY 87 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 3579999999999999999999999999999998764 799999999999999999998765 59999999998
Q ss_pred eeec
Q 007417 405 RARL 408 (604)
Q Consensus 405 ~~~~ 408 (604)
+...
T Consensus 88 a~~~ 91 (104)
T 1wex_A 88 STSK 91 (104)
T ss_dssp CSSS
T ss_pred ccCc
Confidence 7543
No 235
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=2.3e-15 Score=130.44 Aligned_cols=79 Identities=24% Similarity=0.251 Sum_probs=71.1
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCe----EEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCccc
Q 007417 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEV----IEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRC 222 (604)
Q Consensus 147 ~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V----~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i 222 (604)
..+.++|||+|||+++|+++|+++|++||.| ..|+|+++ .+|+++|||||+|.+.++|++||+. ++..|.++.|
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i 97 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYI 97 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEE
Confidence 3467999999999999999999999999975 68999998 5899999999999999999999996 8889999988
Q ss_pred ccCCC
Q 007417 223 GTAPS 227 (604)
Q Consensus 223 ~v~~~ 227 (604)
.|..+
T Consensus 98 ~V~~a 102 (123)
T 2dha_A 98 ELFRS 102 (123)
T ss_dssp CCEEE
T ss_pred EEEEC
Confidence 76553
No 236
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.55 E-value=7.2e-15 Score=131.17 Aligned_cols=80 Identities=20% Similarity=0.453 Sum_probs=75.3
Q ss_pred ccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEe
Q 007417 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (604)
Q Consensus 326 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~ 405 (604)
...++|||+|||..+++++|+++|++||.|..|.|++++.+++++|||||+|.++++|.+|++.||+..|.|+.|.|.++
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999888753
No 237
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.55 E-value=1.7e-15 Score=134.14 Aligned_cols=79 Identities=22% Similarity=0.268 Sum_probs=72.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCC
Q 007417 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (604)
Q Consensus 148 ~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (604)
...++|||+|||+++|+++|+++|++|| |+.|+|++++. ++++|||||+|.+.++|++|| .+++..|.++.|.|..+
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 4578999999999999999999999999 67999999976 999999999999999999999 68999999999988766
Q ss_pred CC
Q 007417 228 ED 229 (604)
Q Consensus 228 ~~ 229 (604)
..
T Consensus 121 ~~ 122 (139)
T 2hgn_A 121 ST 122 (139)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 238
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=2.3e-15 Score=127.52 Aligned_cols=84 Identities=20% Similarity=0.231 Sum_probs=73.8
Q ss_pred cCCCCEEEEcCCCCC-CCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcC--CCeeeCcccc
Q 007417 147 IKKEHEIFIGGLDRD-ATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMK--NPVICGKRCG 223 (604)
Q Consensus 147 ~~~~~~vfV~nLp~~-~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~--~~~l~g~~i~ 223 (604)
...+++|||+|||++ +|+++|+++|++||.|.+|+|++ ++|||||+|.+.++|.+|++.|+ +..|.|+.|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 446899999999998 99999999999999999999963 48999999999999999999875 4569999999
Q ss_pred cCCCCCCCcceec
Q 007417 224 TAPSEDNDTLFVG 236 (604)
Q Consensus 224 v~~~~~~~~l~v~ 236 (604)
|..+.....+.++
T Consensus 96 V~~a~~~~~~~~~ 108 (112)
T 1x4f_A 96 VDLSEKYKKLVSG 108 (112)
T ss_dssp EEEECSCSSSSCC
T ss_pred EEECccccccccC
Confidence 9888776666543
No 239
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.55 E-value=4.2e-15 Score=126.53 Aligned_cols=81 Identities=15% Similarity=0.315 Sum_probs=73.3
Q ss_pred ccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEe
Q 007417 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (604)
Q Consensus 326 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~ 405 (604)
...++|||+|||+.+++++|+++|++||.|..|.|++++.+++++|||||+|.+.++|.+||..+ +..|.|+.|.|.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 34689999999999999999999999999999999999999999999999999999999999976 59999999888876
Q ss_pred ee
Q 007417 406 AR 407 (604)
Q Consensus 406 ~~ 407 (604)
..
T Consensus 102 ~~ 103 (109)
T 2rs2_A 102 FP 103 (109)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 240
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.55 E-value=7.8e-15 Score=127.92 Aligned_cols=81 Identities=16% Similarity=0.324 Sum_probs=73.2
Q ss_pred cCCCCEEEEcCCCCCCCHHHHH----HHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCccc
Q 007417 147 IKKEHEIFIGGLDRDATQEDVR----KVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRC 222 (604)
Q Consensus 147 ~~~~~~vfV~nLp~~~te~dL~----~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i 222 (604)
..+.++|||+|||+.+++++|+ ++|++||.|.+|.+.. +++++|||||+|.+.++|.+|+..||+..|.|+.|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 4467899999999999999876 6999999999998853 58899999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 007417 223 GTAPSEDN 230 (604)
Q Consensus 223 ~v~~~~~~ 230 (604)
.|.++...
T Consensus 103 ~V~~a~~~ 110 (127)
T 2a3j_A 103 VITFSETP 110 (127)
T ss_dssp EEEECCCC
T ss_pred EEEEccCc
Confidence 99887653
No 241
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.55 E-value=4.3e-15 Score=122.71 Aligned_cols=75 Identities=13% Similarity=0.264 Sum_probs=68.3
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCe--eCCCccEEEE
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE--FSDGNSKVKL 404 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~--~~g~~~~v~~ 404 (604)
+.++|||+|||+.+|+++|+++|++||.|..|.+++ +||||||+|.+.++|.+|+..||+.. |.|+.|.|.+
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~ 93 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNY 93 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEe
Confidence 457999999999999999999999999999999975 37999999999999999999999886 7899999988
Q ss_pred eee
Q 007417 405 RAR 407 (604)
Q Consensus 405 ~~~ 407 (604)
+..
T Consensus 94 S~~ 96 (100)
T 3r27_A 94 STS 96 (100)
T ss_dssp CSC
T ss_pred ccc
Confidence 643
No 242
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.55 E-value=3.8e-15 Score=126.56 Aligned_cols=79 Identities=15% Similarity=0.183 Sum_probs=71.7
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccC-CeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccC
Q 007417 147 IKKEHEIFIGGLDRDATQEDVRKVFERIG-EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (604)
Q Consensus 147 ~~~~~~vfV~nLp~~~te~dL~~~F~~~G-~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (604)
....++|||+|||+++|+++|+++|++|| +|..|.|+. ..++|||||+|.+.++|++|++.||+..|.|+.|.|.
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~ 100 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVE 100 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 44678999999999999999999999999 899998853 3589999999999999999999999999999999987
Q ss_pred CCCC
Q 007417 226 PSED 229 (604)
Q Consensus 226 ~~~~ 229 (604)
.+..
T Consensus 101 ~a~~ 104 (111)
T 2jvr_A 101 RDDN 104 (111)
T ss_dssp ESCC
T ss_pred ECCC
Confidence 7653
No 243
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=8.7e-16 Score=132.02 Aligned_cols=80 Identities=8% Similarity=0.080 Sum_probs=74.2
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCE-EEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEe
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDV-IRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v-~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~ 405 (604)
..++|||+|||+.+|+++|+++|++||.| ..|.|++++ +++++|||||+|.+.++|.+||.. |+..|.|+.|.|.++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 14 AKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 35789999999999999999999999999 889999998 899999999999999999999986 999999999999887
Q ss_pred eec
Q 007417 406 ARL 408 (604)
Q Consensus 406 ~~~ 408 (604)
...
T Consensus 92 ~~~ 94 (114)
T 2cpy_A 92 TLE 94 (114)
T ss_dssp CHH
T ss_pred CHH
Confidence 544
No 244
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.55 E-value=2.4e-15 Score=120.71 Aligned_cols=72 Identities=18% Similarity=0.344 Sum_probs=67.1
Q ss_pred cccccCCCCccc------ChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCC-ccE
Q 007417 329 KTVFLDGVPPHW------KENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG-NSK 401 (604)
Q Consensus 329 ~~l~v~nLp~~~------t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~-~~~ 401 (604)
++|||+|||+.+ ++++|+++|++||.|..|.|+ +.+++++|||||+|.+.++|.+|+..|||..|.|+ .|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 589999999999 779999999999999999988 46899999999999999999999999999999999 776
Q ss_pred E
Q 007417 402 V 402 (604)
Q Consensus 402 v 402 (604)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 5
No 245
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=1.1e-14 Score=123.76 Aligned_cols=75 Identities=17% Similarity=0.322 Sum_probs=69.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeC-----ccc
Q 007417 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICG-----KRC 222 (604)
Q Consensus 148 ~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g-----~~i 222 (604)
...++|||+|||+++|+++|+++|++||.|..|+|+.+ |||||+|.+.++|++||+.||+..|.| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 45789999999999999999999999999999999865 899999999999999999999999999 888
Q ss_pred ccCCCCC
Q 007417 223 GTAPSED 229 (604)
Q Consensus 223 ~v~~~~~ 229 (604)
.|..+.+
T Consensus 86 ~V~~a~~ 92 (108)
T 1x4c_A 86 RVKVDGP 92 (108)
T ss_dssp EEEESSC
T ss_pred EEEeCCC
Confidence 8877655
No 246
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=9.2e-15 Score=124.26 Aligned_cols=73 Identities=22% Similarity=0.441 Sum_probs=67.4
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCC-----CccE
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-----GNSK 401 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g-----~~~~ 401 (604)
..++|||+|||+.+++++|+++|++||.|..|.|+.+ |||||+|.+.++|.+||+.||+..|.| +.|.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 86 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEE
Confidence 4579999999999999999999999999999999876 899999999999999999999999999 7777
Q ss_pred EEEee
Q 007417 402 VKLRA 406 (604)
Q Consensus 402 v~~~~ 406 (604)
|.++.
T Consensus 87 V~~a~ 91 (108)
T 1x4c_A 87 VKVDG 91 (108)
T ss_dssp EEESS
T ss_pred EEeCC
Confidence 77653
No 247
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.55 E-value=1.8e-14 Score=120.91 Aligned_cols=77 Identities=21% Similarity=0.383 Sum_probs=71.5
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCC
Q 007417 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (604)
Q Consensus 147 ~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (604)
....++|||+|||+++|+++|+++|++||.|.+|+++ +++|||||+|.+.++|.+|+..|++..|.|+.|.|.+
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGW 97 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCB
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEe
Confidence 3457899999999999999999999999999999997 4689999999999999999999999999999999988
Q ss_pred CCC
Q 007417 227 SED 229 (604)
Q Consensus 227 ~~~ 229 (604)
+.+
T Consensus 98 a~~ 100 (101)
T 2la4_A 98 GKE 100 (101)
T ss_dssp CCC
T ss_pred ccC
Confidence 764
No 248
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.7e-14 Score=120.52 Aligned_cols=75 Identities=16% Similarity=0.328 Sum_probs=68.2
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhc--CCeeCCCccEEEE
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN--NKEFSDGNSKVKL 404 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~ln--g~~~~g~~~~v~~ 404 (604)
..++|||+|||+.+++++|+++|++||.|..|.|+++ +|||||+|.+.++|.+|+..|+ +..|.|+.|.|.+
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 87 (101)
T 2cq1_A 14 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQY 87 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEE
Confidence 4579999999999999999999999999999998864 7999999999999999999874 6789999999998
Q ss_pred eee
Q 007417 405 RAR 407 (604)
Q Consensus 405 ~~~ 407 (604)
+..
T Consensus 88 a~~ 90 (101)
T 2cq1_A 88 SNH 90 (101)
T ss_dssp CSC
T ss_pred cCc
Confidence 754
No 249
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1.4e-14 Score=118.74 Aligned_cols=76 Identities=29% Similarity=0.553 Sum_probs=70.4
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCC
Q 007417 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (604)
Q Consensus 147 ~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (604)
....++|||+|||+++|+++|+++|++||.|..|+|+ ++||||+|.+.++|.+|+..|++..|.|+.|.|..
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 3467999999999999999999999999999999996 68999999999999999999999999999999988
Q ss_pred CCCC
Q 007417 227 SEDN 230 (604)
Q Consensus 227 ~~~~ 230 (604)
+...
T Consensus 77 a~~~ 80 (90)
T 2dnq_A 77 SKNK 80 (90)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 7653
No 250
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=6.9e-15 Score=123.62 Aligned_cols=77 Identities=22% Similarity=0.289 Sum_probs=68.9
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCC--CeeeCccccc
Q 007417 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKN--PVICGKRCGT 224 (604)
Q Consensus 147 ~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~--~~l~g~~i~v 224 (604)
..++++|||+|||+++|+++|+++|++||.|..|+|+++ +|||||+|.+.++|.+|++.|++ ..|.|+.|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 346799999999999999999999999999999999753 79999999999999999998864 4589999998
Q ss_pred CCCCC
Q 007417 225 APSED 229 (604)
Q Consensus 225 ~~~~~ 229 (604)
..+..
T Consensus 86 ~~a~~ 90 (104)
T 1wex_A 86 NYSTS 90 (104)
T ss_dssp EECSS
T ss_pred EEccC
Confidence 87764
No 251
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=5.8e-15 Score=125.17 Aligned_cols=76 Identities=18% Similarity=0.251 Sum_probs=70.5
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEe
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~ 405 (604)
...+|||+|||+.+|+++|+++|++| .|..|.|++++. |+++|||||+|.++++|.+|| .||+..|.|+.|.|..+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 34789999999999999999999999 899999999975 999999999999999999999 69999999999888655
No 252
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=6.6e-15 Score=120.97 Aligned_cols=78 Identities=22% Similarity=0.323 Sum_probs=72.9
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEee
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
..++|||+|||+.+++++|+++|++| .|..|.|+++ .+++++|||||+|.+.++|.+||. ||+..|.|+.|.|.++.
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 35789999999999999999999999 9999999999 789999999999999999999999 99999999998888764
Q ss_pred e
Q 007417 407 R 407 (604)
Q Consensus 407 ~ 407 (604)
.
T Consensus 86 ~ 86 (91)
T 2dgw_A 86 S 86 (91)
T ss_dssp S
T ss_pred c
Confidence 3
No 253
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.31 E-value=4.2e-16 Score=134.49 Aligned_cols=83 Identities=25% Similarity=0.349 Sum_probs=78.0
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEE--------EEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeee
Q 007417 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIE--------VRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVIC 218 (604)
Q Consensus 147 ~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~--------v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~ 218 (604)
..+.++|||+|||+++|+++|+++|++||.|.. |+|+.++.+++++|||||+|.+.++|.+|+..|++..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 346799999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred CcccccCCCCC
Q 007417 219 GKRCGTAPSED 229 (604)
Q Consensus 219 g~~i~v~~~~~ 229 (604)
|+.|.|..+..
T Consensus 84 g~~l~V~~a~~ 94 (116)
T 2lcw_A 84 GNPIKVSFATR 94 (116)
Confidence 99999888754
No 254
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.7e-14 Score=122.77 Aligned_cols=80 Identities=25% Similarity=0.512 Sum_probs=73.6
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccC
Q 007417 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (604)
Q Consensus 146 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (604)
.....++|||+|||+++|+++|+++|++||.|..|+|+++ +|||||+|.+.++|.+|+..|++..|.|+.|.|.
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3456899999999999999999999999999999999865 8999999999999999999999999999999998
Q ss_pred CCCCCC
Q 007417 226 PSEDND 231 (604)
Q Consensus 226 ~~~~~~ 231 (604)
++....
T Consensus 95 ~a~~~~ 100 (109)
T 1x4g_A 95 WGKESP 100 (109)
T ss_dssp CCCCCC
T ss_pred ecCCCC
Confidence 887643
No 255
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.1e-14 Score=123.31 Aligned_cols=78 Identities=19% Similarity=0.374 Sum_probs=72.4
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCee--------CCC
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF--------SDG 398 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~--------~g~ 398 (604)
..++|||+|||+.+++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|.+|+..|||..| .++
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 24 DPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 35789999999999999999999999999999999998 899999999999999999999999999999 466
Q ss_pred ccEEEEe
Q 007417 399 NSKVKLR 405 (604)
Q Consensus 399 ~~~v~~~ 405 (604)
.|.|.++
T Consensus 103 ~l~v~~a 109 (114)
T 1x5o_A 103 PLLCKFS 109 (114)
T ss_dssp CBEEEEC
T ss_pred ceeEEcc
Confidence 6777765
No 256
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.54 E-value=4e-15 Score=125.83 Aligned_cols=78 Identities=18% Similarity=0.314 Sum_probs=71.8
Q ss_pred ccccccCCCCccc------ChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCC-cc
Q 007417 328 VKTVFLDGVPPHW------KENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG-NS 400 (604)
Q Consensus 328 ~~~l~v~nLp~~~------t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~-~~ 400 (604)
.++|||+|||+.+ ++++|+++|++||.|..|.|+ +.+|+++|||||+|.+.++|.+|+..|||..|.|+ .|
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 5789999999999 789999999999999999988 46899999999999999999999999999999998 88
Q ss_pred EEEEeee
Q 007417 401 KVKLRAR 407 (604)
Q Consensus 401 ~v~~~~~ 407 (604)
.|.++..
T Consensus 93 ~V~~a~~ 99 (105)
T 2nlw_A 93 RVNLFTD 99 (105)
T ss_dssp EEECSCC
T ss_pred EEEEcch
Confidence 8887643
No 257
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=2.2e-14 Score=120.52 Aligned_cols=77 Identities=23% Similarity=0.444 Sum_probs=71.2
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEee
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
..++|||+|||+.+++++|+++|+.|+ .|.++.++.+++++|||||+|.+.++|.+||..||+..|.|+.|.|.++.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2fc8_A 14 PSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 90 (102)
T ss_dssp CCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 458999999999999999999999874 67888888899999999999999999999999999999999999998863
No 258
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.54 E-value=5.5e-15 Score=120.63 Aligned_cols=84 Identities=21% Similarity=0.282 Sum_probs=77.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCC
Q 007417 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (604)
Q Consensus 148 ~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (604)
...++|||+|||+++|+++|+++|++| .|..|+|. +++|||||+|.+.++|.+|+..|++..|.|+.|.|..+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 357899999999999999999999999 99999984 67999999999999999999999999999999999999
Q ss_pred CCCCcceeccc
Q 007417 228 EDNDTLFVGNI 238 (604)
Q Consensus 228 ~~~~~l~v~nl 238 (604)
.....|.+.|.
T Consensus 76 ~~~~~~~~~n~ 86 (88)
T 1wg1_A 76 PTDALLCSGPS 86 (88)
T ss_dssp CCCCCCSCCCT
T ss_pred CCCceEecCCC
Confidence 88887777664
No 259
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=1.5e-14 Score=120.45 Aligned_cols=78 Identities=15% Similarity=0.393 Sum_probs=71.1
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeee--Cccccc
Q 007417 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVIC--GKRCGT 224 (604)
Q Consensus 147 ~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~--g~~i~v 224 (604)
....++|||+|||+++|+++|+++|++||.|..|.++++ +|||||+|.+.++|++|++.|++..|. |+.|.|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 346789999999999999999999999999999999643 789999999999999999999999999 999998
Q ss_pred CCCCCC
Q 007417 225 APSEDN 230 (604)
Q Consensus 225 ~~~~~~ 230 (604)
..+.+.
T Consensus 88 ~~a~~~ 93 (97)
T 1why_A 88 DFAKSG 93 (97)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 877653
No 260
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=1.5e-14 Score=117.14 Aligned_cols=75 Identities=24% Similarity=0.452 Sum_probs=69.3
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhc-CCCeeeCcccccC
Q 007417 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM-KNPVICGKRCGTA 225 (604)
Q Consensus 147 ~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l-~~~~l~g~~i~v~ 225 (604)
....++|||+|||+++|+++|+++|++||.|..|+++++ +|||||+|.+.++|.+|+..| ++..|.|+.|.|.
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 346789999999999999999999999999999999863 799999999999999999998 9999999999887
Q ss_pred CC
Q 007417 226 PS 227 (604)
Q Consensus 226 ~~ 227 (604)
++
T Consensus 83 ~a 84 (85)
T 2ytc_A 83 WG 84 (85)
T ss_dssp EC
T ss_pred ec
Confidence 65
No 261
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.53 E-value=8.3e-15 Score=135.94 Aligned_cols=82 Identities=17% Similarity=0.330 Sum_probs=77.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCC
Q 007417 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (604)
Q Consensus 148 ~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (604)
...++|||+|||+++|+++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|.+|++.|++..|.|+.|.|..+
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 467899999999999999999999999999999999998 8999999999999999999999999999999999998877
Q ss_pred CCC
Q 007417 228 EDN 230 (604)
Q Consensus 228 ~~~ 230 (604)
...
T Consensus 165 ~~~ 167 (177)
T 2f3j_A 165 ASQ 167 (177)
T ss_dssp SSG
T ss_pred cCC
Confidence 653
No 262
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=6.9e-15 Score=123.44 Aligned_cols=80 Identities=28% Similarity=0.447 Sum_probs=72.2
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCC
Q 007417 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (604)
Q Consensus 147 ~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (604)
....++|||+|||+++|+++|+++|++||.| +++.+ .+++++|||||+|.+.++|++|+..|++..|.|+.|.|..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 3468999999999999999999999999977 56666 6789999999999999999999999999999999999887
Q ss_pred CCCC
Q 007417 227 SEDN 230 (604)
Q Consensus 227 ~~~~ 230 (604)
+...
T Consensus 88 a~~~ 91 (101)
T 2fc9_A 88 QGPR 91 (101)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 7653
No 263
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.53 E-value=1.4e-14 Score=124.52 Aligned_cols=68 Identities=21% Similarity=0.436 Sum_probs=62.8
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccE
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSK 401 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~ 401 (604)
..++|||+|||+.+++++|+++|++||.|..|.|+.+ |||||+|.+.++|.+||+.||+..|.|+.+.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~ 82 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGE 82 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEee
Confidence 4579999999999999999999999999999999765 8999999999999999999999999999844
No 264
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.53 E-value=1.2e-15 Score=128.08 Aligned_cols=80 Identities=15% Similarity=0.321 Sum_probs=73.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCC
Q 007417 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (604)
Q Consensus 148 ~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (604)
...++|||+|||+++|+++|+++|++||.|.. +++.++.+++++|||||+|.+.++|.+||+ |++..|.|+.|.|..+
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 35789999999999999999999999999988 777787889999999999999999999998 9999999999999877
Q ss_pred CC
Q 007417 228 ED 229 (604)
Q Consensus 228 ~~ 229 (604)
..
T Consensus 93 ~~ 94 (101)
T 1fj7_A 93 KG 94 (101)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 265
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=1e-14 Score=122.33 Aligned_cols=77 Identities=22% Similarity=0.388 Sum_probs=69.8
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEee
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
..++|||+|||+.+++++|+++|++||.| .|+.+ .+++++|||||+|.++++|.+||..||+..|.|+.|.|.++.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 89 (101)
T 2fc9_A 14 ESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG 89 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcC
Confidence 45899999999999999999999999977 56666 678999999999999999999999999999999999888763
Q ss_pred e
Q 007417 407 R 407 (604)
Q Consensus 407 ~ 407 (604)
.
T Consensus 90 ~ 90 (101)
T 2fc9_A 90 P 90 (101)
T ss_dssp S
T ss_pred C
Confidence 3
No 266
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=8.5e-15 Score=124.01 Aligned_cols=77 Identities=22% Similarity=0.376 Sum_probs=68.7
Q ss_pred cccccccCCCCcc-cChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcC--CeeCCCccEEE
Q 007417 327 HVKTVFLDGVPPH-WKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINN--KEFSDGNSKVK 403 (604)
Q Consensus 327 ~~~~l~v~nLp~~-~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng--~~~~g~~~~v~ 403 (604)
..++|||+|||+. +++++|+++|++||.|..|.|++ ++|||||+|.+.++|..|+..||+ ..|.|+.|.|.
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 97 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVD 97 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEE
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 3579999999998 99999999999999999999974 489999999999999999998864 56999999999
Q ss_pred EeeecC
Q 007417 404 LRARLS 409 (604)
Q Consensus 404 ~~~~~~ 409 (604)
++....
T Consensus 98 ~a~~~~ 103 (112)
T 1x4f_A 98 LSEKYK 103 (112)
T ss_dssp EECSCS
T ss_pred ECcccc
Confidence 975543
No 267
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=3.3e-15 Score=130.47 Aligned_cols=80 Identities=16% Similarity=0.189 Sum_probs=74.1
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEee
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
..++|||+|||+.+|+++|+++|++||.|..+.++.+..+++++|||||+|.+.++|.+||. ||+..|.|+.|.|.++.
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~ 102 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPIT 102 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 45799999999999999999999999999887777777899999999999999999999999 99999999999999875
Q ss_pred e
Q 007417 407 R 407 (604)
Q Consensus 407 ~ 407 (604)
.
T Consensus 103 ~ 103 (124)
T 1wel_A 103 K 103 (124)
T ss_dssp H
T ss_pred H
Confidence 4
No 268
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=1.9e-14 Score=117.92 Aligned_cols=73 Identities=23% Similarity=0.450 Sum_probs=67.8
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEee
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
..++|||+|||+.+++++|+++|++||.|..|.|+ +|||||+|.+.++|.+|+..||+..|.|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASK 78 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence 35799999999999999999999999999999997 6799999999999999999999999999999998763
Q ss_pred e
Q 007417 407 R 407 (604)
Q Consensus 407 ~ 407 (604)
.
T Consensus 79 ~ 79 (90)
T 2dnq_A 79 N 79 (90)
T ss_dssp C
T ss_pred C
Confidence 3
No 269
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.53 E-value=4e-15 Score=131.28 Aligned_cols=78 Identities=8% Similarity=0.127 Sum_probs=73.1
Q ss_pred cccccccCCCCcccChhhHHhhhcccCC---EEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEE
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGD---VIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 403 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~---v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~ 403 (604)
..++|||+|||+.+|+++|+++|++||. |..|.|++++. ++++|||||+|.+.++|.+||. ||+..|.|+.|.|.
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 3578999999999999999999999999 88999999987 9999999999999999999999 99999999999988
Q ss_pred Eee
Q 007417 404 LRA 406 (604)
Q Consensus 404 ~~~ 406 (604)
++.
T Consensus 121 ~a~ 123 (136)
T 2hgl_A 121 KSH 123 (136)
T ss_dssp ECC
T ss_pred ECC
Confidence 753
No 270
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.53 E-value=1.9e-14 Score=122.70 Aligned_cols=92 Identities=17% Similarity=0.328 Sum_probs=77.3
Q ss_pred CCcceeecccCCCCCCChhhhccccccccCCCCcc-cChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHH
Q 007417 305 PERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPH-WKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 383 (604)
Q Consensus 305 ~~r~l~v~~a~~~~~~~~~~~~~~~~l~v~nLp~~-~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A 383 (604)
.+..+.+..+.+.....+ ....++|||+|||+. +++++|+++|++||.|..|.| ++|||||+|.+.++|
T Consensus 6 ~g~~~~~~~s~~~~~~~~--~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A 75 (110)
T 1wf1_A 6 SGMSLKLQASNVTNKNDP--KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHA 75 (110)
T ss_dssp CSCCCCCCCCCSCCSCCC--TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHH
T ss_pred CCcccccccCCCCCCCCC--CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHH
Confidence 356666666655433332 223579999999999 999999999999999999988 478999999999999
Q ss_pred HHHHHHhcCCeeCCCccEEEEee
Q 007417 384 VACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 384 ~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
.+|+..||+..|.|+.|.|.++.
T Consensus 76 ~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 76 RAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp HHHHHHHTTCEETTEECCEEESC
T ss_pred HHHHHHcCCCEECCeEEEEEECC
Confidence 99999999999999999998863
No 271
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=4.1e-14 Score=116.94 Aligned_cols=77 Identities=18% Similarity=0.325 Sum_probs=69.3
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCC
Q 007417 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (604)
Q Consensus 147 ~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (604)
....++|||+|||+++|+++|+++|++||.|.+| +.++.+++ ||||+|.+.++|.+|+. |++..|.|+.|.|..
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEE
Confidence 3457899999999999999999999999999987 56666665 99999999999999999 999999999999987
Q ss_pred CCC
Q 007417 227 SED 229 (604)
Q Consensus 227 ~~~ 229 (604)
+..
T Consensus 79 a~~ 81 (94)
T 2e5g_A 79 REQ 81 (94)
T ss_dssp SCC
T ss_pred CCc
Confidence 654
No 272
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=1.1e-14 Score=122.42 Aligned_cols=82 Identities=26% Similarity=0.449 Sum_probs=74.5
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccC
Q 007417 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (604)
Q Consensus 146 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (604)
.....++|||+|||+++|+++|+++|++|+ .|+++.++.+++++|||||+|.+.++|.+||..|++..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 345789999999999999999999999873 67888888899999999999999999999999999999999999998
Q ss_pred CCCCC
Q 007417 226 PSEDN 230 (604)
Q Consensus 226 ~~~~~ 230 (604)
.+.+.
T Consensus 88 ~a~~~ 92 (102)
T 2fc8_A 88 WAKPK 92 (102)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 77653
No 273
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.52 E-value=5.7e-15 Score=127.64 Aligned_cols=79 Identities=10% Similarity=0.158 Sum_probs=73.5
Q ss_pred cccccccCCCCcccChhhHHhhhcccCC---EEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEE
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGD---VIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 403 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~---v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~ 403 (604)
..++|||+|||+.+|+++|+++|++||. |..|+|++++. ++++|||||+|.+.++|.+||. ||+..|.|+.|.|.
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 3578999999999999999999999998 89999999976 9999999999999999999999 99999999999998
Q ss_pred Eeee
Q 007417 404 LRAR 407 (604)
Q Consensus 404 ~~~~ 407 (604)
++..
T Consensus 94 ~a~~ 97 (118)
T 2db1_A 94 KSHR 97 (118)
T ss_dssp EECH
T ss_pred ECCH
Confidence 7643
No 274
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=9.6e-15 Score=125.43 Aligned_cols=75 Identities=23% Similarity=0.416 Sum_probs=65.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCC---CCCcceEEEEEeehHHHHHHHHhcCCCeeeCccccc
Q 007417 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFST---NRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (604)
Q Consensus 148 ~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~t---g~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v 224 (604)
...++|||+|||+++|+++|+++|++||.|. +.++.++.+ |+++|||||+|.+.++|++||+.|+ .+.|+.+.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4679999999999999999999999999999 888888877 7999999999999999999999883 255555444
Q ss_pred C
Q 007417 225 A 225 (604)
Q Consensus 225 ~ 225 (604)
.
T Consensus 83 ~ 83 (114)
T 2dnl_A 83 V 83 (114)
T ss_dssp E
T ss_pred c
Confidence 3
No 275
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.8e-15 Score=129.04 Aligned_cols=82 Identities=24% Similarity=0.331 Sum_probs=71.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCC
Q 007417 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (604)
Q Consensus 148 ~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (604)
...++|||+|||+++|+++|+++|++||.|..|.+..+..+++++|||||+|.+.++|.+|+..|++..|.|+.|.|..+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 36799999999999999999999999999844433333337899999999999999999999999999999999999877
Q ss_pred CC
Q 007417 228 ED 229 (604)
Q Consensus 228 ~~ 229 (604)
..
T Consensus 103 ~~ 104 (115)
T 2cpx_A 103 KN 104 (115)
T ss_dssp CC
T ss_pred cC
Confidence 65
No 276
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.6e-14 Score=123.66 Aligned_cols=75 Identities=16% Similarity=0.294 Sum_probs=68.7
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhc--CCeeCCCccEEEE
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN--NKEFSDGNSKVKL 404 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~ln--g~~~~g~~~~v~~ 404 (604)
..++|||+|||+.+|+++|+++|++||.|..|.|+++ +|||||+|.+.++|.+|+..|+ +..|.|+.|.|.+
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~ 103 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 103 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEE
Confidence 3578999999999999999999999999999999875 7999999999999999999987 4689999999998
Q ss_pred eee
Q 007417 405 RAR 407 (604)
Q Consensus 405 ~~~ 407 (604)
+..
T Consensus 104 a~~ 106 (119)
T 2ad9_A 104 SNH 106 (119)
T ss_dssp CSS
T ss_pred ccC
Confidence 643
No 277
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=8.5e-15 Score=124.66 Aligned_cols=80 Identities=14% Similarity=0.339 Sum_probs=73.6
Q ss_pred ccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEe
Q 007417 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (604)
Q Consensus 326 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~ 405 (604)
...++|||+|||..+++++|+++|++||.|..|.|+++. +.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 346899999999999999999999999999999999885 458999999999999999999999999999999999886
Q ss_pred ee
Q 007417 406 AR 407 (604)
Q Consensus 406 ~~ 407 (604)
..
T Consensus 105 ~~ 106 (109)
T 2err_A 105 TA 106 (109)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 278
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.27 E-value=9.5e-16 Score=132.23 Aligned_cols=80 Identities=26% Similarity=0.331 Sum_probs=75.5
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEE--------EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCC
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIR--------IVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG 398 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~--------v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~ 398 (604)
..++|||+|||+.+++++|+++|++||.|.. |.|+.++.+++++|||||+|.+.++|.+|+..||+..|.|+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 85 (116)
Confidence 4579999999999999999999999999998 89999988999999999999999999999999999999999
Q ss_pred ccEEEEee
Q 007417 399 NSKVKLRA 406 (604)
Q Consensus 399 ~~~v~~~~ 406 (604)
.|.|.++.
T Consensus 86 ~l~V~~a~ 93 (116)
T 2lcw_A 86 PIKVSFAT 93 (116)
Confidence 99988763
No 279
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=4.5e-15 Score=127.77 Aligned_cols=81 Identities=15% Similarity=0.244 Sum_probs=70.3
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEee
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
..++|||+|||+.+|+++|+++|++||.|..+.+..+..+++++|||||+|.+.++|.+||..||+..|.|+.|.|.++.
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 103 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGK 103 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEcc
Confidence 45799999999999999999999999998443333332378899999999999999999999999999999999999874
Q ss_pred e
Q 007417 407 R 407 (604)
Q Consensus 407 ~ 407 (604)
.
T Consensus 104 ~ 104 (115)
T 2cpx_A 104 N 104 (115)
T ss_dssp C
T ss_pred C
Confidence 4
No 280
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.52 E-value=3.3e-15 Score=117.98 Aligned_cols=75 Identities=25% Similarity=0.492 Sum_probs=70.9
Q ss_pred ccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEe
Q 007417 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (604)
Q Consensus 330 ~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~ 405 (604)
+|||+|||+.+++++|+++|++||.|..|.+++++.++.++|||||+|.+.++|.+|+. +++..|.|+.+.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 58999999999999999999999999999999999999999999999999999999998 5899999999988763
No 281
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.4e-14 Score=120.63 Aligned_cols=78 Identities=19% Similarity=0.384 Sum_probs=70.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCC
Q 007417 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (604)
Q Consensus 148 ~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (604)
...++|||+|||+++|+++|+++|++||.|. ++++. ++++|||||+|.+.++|.+|+..|++..|.|+.|.|..+
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 3578999999999999999999999999997 67764 478999999999999999999999999999999999877
Q ss_pred CCC
Q 007417 228 EDN 230 (604)
Q Consensus 228 ~~~ 230 (604)
...
T Consensus 92 ~~~ 94 (97)
T 2e5j_A 92 RQQ 94 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 282
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.52 E-value=1.3e-14 Score=126.55 Aligned_cols=78 Identities=18% Similarity=0.352 Sum_probs=70.7
Q ss_pred cccccccCCCCcccChhhHH----hhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEE
Q 007417 327 HVKTVFLDGVPPHWKENQIR----DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 402 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~----~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v 402 (604)
..++|||+|||+.+++++|+ ++|++||.|..|.+.. +++++|||||+|.+.++|..|+..|||..|.|+.|.|
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 35789999999999999876 6999999999988854 5789999999999999999999999999999999999
Q ss_pred EEeee
Q 007417 403 KLRAR 407 (604)
Q Consensus 403 ~~~~~ 407 (604)
.++..
T Consensus 105 ~~a~~ 109 (127)
T 2a3j_A 105 TFSET 109 (127)
T ss_dssp EECCC
T ss_pred EEccC
Confidence 98754
No 283
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.52 E-value=9e-15 Score=124.17 Aligned_cols=79 Identities=15% Similarity=0.197 Sum_probs=71.1
Q ss_pred CEEEEcCC----CCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEee----hHH----HHHHHH--hcCCCe
Q 007417 151 HEIFIGGL----DRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFAN----KEH----AKRALT--EMKNPV 216 (604)
Q Consensus 151 ~~vfV~nL----p~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~----~e~----A~~Al~--~l~~~~ 216 (604)
..|||+|| |+.+++.+|+++|++||+|.+|.++.|+.||+++|||||+|.+ +++ |.+|+. .+++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 333 788888 689999
Q ss_pred eeCcccccCCCCC
Q 007417 217 ICGKRCGTAPSED 229 (604)
Q Consensus 217 l~g~~i~v~~~~~ 229 (604)
|.|+.|+|.....
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999876654
No 284
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.52 E-value=3.6e-14 Score=117.98 Aligned_cols=79 Identities=22% Similarity=0.476 Sum_probs=70.4
Q ss_pred hhccCCCCEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCccc
Q 007417 144 DRKIKKEHEIFIGGLDR-DATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRC 222 (604)
Q Consensus 144 ~~~~~~~~~vfV~nLp~-~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i 222 (604)
.......++|||+|||+ ++|+++|+++|++||.|..|+|. +|||||+|.+.++|.+|+..|++..|.|+.|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 87 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKL 87 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEEC
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34455789999999998 99999999999999999999983 7899999999999999999999999999999
Q ss_pred ccCCCCCC
Q 007417 223 GTAPSEDN 230 (604)
Q Consensus 223 ~v~~~~~~ 230 (604)
.|..+...
T Consensus 88 ~V~~a~~~ 95 (97)
T 2xnq_A 88 ILEVSSSN 95 (97)
T ss_dssp EEEECCCC
T ss_pred EEEecCCC
Confidence 98877643
No 285
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.51 E-value=2.7e-14 Score=121.27 Aligned_cols=79 Identities=20% Similarity=0.388 Sum_probs=71.3
Q ss_pred hhccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccc
Q 007417 144 DRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCG 223 (604)
Q Consensus 144 ~~~~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~ 223 (604)
.......++|||+|||+++|+++|+++|++||.|..|+|+ +|||||+|.+.++|.+|+..|++..|.|+.|.
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 96 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLE 96 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 3345578999999999999999999999999999999997 78999999999999999999999999999999
Q ss_pred cCCCCCC
Q 007417 224 TAPSEDN 230 (604)
Q Consensus 224 v~~~~~~ 230 (604)
|..+...
T Consensus 97 V~~a~~~ 103 (108)
T 2jvo_A 97 VVYSKLP 103 (108)
T ss_dssp EESCSCC
T ss_pred EEEecCC
Confidence 9887653
No 286
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.51 E-value=1.2e-14 Score=120.94 Aligned_cols=82 Identities=21% Similarity=0.459 Sum_probs=74.3
Q ss_pred cCCCCEEEEcCCCCCCCHHHHH----HHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCccc
Q 007417 147 IKKEHEIFIGGLDRDATQEDVR----KVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRC 222 (604)
Q Consensus 147 ~~~~~~vfV~nLp~~~te~dL~----~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i 222 (604)
..+.++|||+|||+++|+++|+ ++|++||.|..|+++. ++.++|||||+|.+.++|.+|+..|++..|.|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 3468999999999999999999 9999999999999874 47889999999999999999999999999999999
Q ss_pred ccCCCCCCC
Q 007417 223 GTAPSEDND 231 (604)
Q Consensus 223 ~v~~~~~~~ 231 (604)
.|..+....
T Consensus 82 ~v~~a~~~~ 90 (97)
T 1nu4_A 82 RIQYAKTDS 90 (97)
T ss_dssp EEEECSSCC
T ss_pred EEEEccCCC
Confidence 998876543
No 287
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.51 E-value=1.5e-14 Score=145.12 Aligned_cols=76 Identities=21% Similarity=0.277 Sum_probs=70.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeee-CcccccCC
Q 007417 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVIC-GKRCGTAP 226 (604)
Q Consensus 148 ~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~-g~~i~v~~ 226 (604)
...++|||+|||+++|+++|+++|++||.|.+|+|+.++ +|||||+|.+.++|.+|+..|++..|. |+.|+|.+
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 279 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISF 279 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEE
Confidence 457899999999999999999999999999999998653 689999999999999999999999999 99998877
Q ss_pred CC
Q 007417 227 SE 228 (604)
Q Consensus 227 ~~ 228 (604)
++
T Consensus 280 ak 281 (282)
T 3pgw_A 280 AK 281 (282)
T ss_pred ec
Confidence 54
No 288
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.51 E-value=2.2e-14 Score=119.08 Aligned_cols=74 Identities=14% Similarity=0.311 Sum_probs=68.9
Q ss_pred cccccccCCCCc-ccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEe
Q 007417 327 HVKTVFLDGVPP-HWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (604)
Q Consensus 327 ~~~~l~v~nLp~-~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~ 405 (604)
..++|||+|||+ .+++++|+++|++||.|..|.|. +|||||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 9 ~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 80 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVS 80 (96)
T ss_dssp CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEc
Confidence 457999999998 99999999999999999999983 789999999999999999999999999999999987
Q ss_pred eec
Q 007417 406 ARL 408 (604)
Q Consensus 406 ~~~ 408 (604)
...
T Consensus 81 ~~~ 83 (96)
T 2kvi_A 81 SSN 83 (96)
T ss_dssp ECC
T ss_pred CcC
Confidence 554
No 289
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.51 E-value=8.8e-15 Score=123.00 Aligned_cols=76 Identities=29% Similarity=0.560 Sum_probs=70.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCC
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (604)
..++|||+|||+++|+++|+++|++||.|..|+|++++ +++++|||||+|.+.++|.+|+. ++..|.|+.|.|..+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 46899999999999999999999999999999999998 89999999999999999999998 888888988876554
No 290
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.51 E-value=1.9e-14 Score=119.51 Aligned_cols=76 Identities=21% Similarity=0.478 Sum_probs=68.2
Q ss_pred ccCCCCEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCccccc
Q 007417 146 KIKKEHEIFIGGLDR-DATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (604)
Q Consensus 146 ~~~~~~~vfV~nLp~-~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v 224 (604)
...+.++|||+|||+ ++|+++|+++|++||.|..|+|. +|||||+|.+.++|.+|+..|++..|.|+.|.|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 345789999999999 99999999999999999999994 789999999999999999999999999999988
Q ss_pred CCCCC
Q 007417 225 APSED 229 (604)
Q Consensus 225 ~~~~~ 229 (604)
..+..
T Consensus 78 ~~a~~ 82 (96)
T 2kvi_A 78 EVSSS 82 (96)
T ss_dssp EEEEC
T ss_pred EEcCc
Confidence 76643
No 291
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=2.5e-14 Score=117.24 Aligned_cols=77 Identities=31% Similarity=0.540 Sum_probs=70.3
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccC
Q 007417 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (604)
Q Consensus 146 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (604)
.....++|||+|||+++|+++|+++|++||.|..|+|++ +||||+|.+.++|++|+..|++..|.|+.|.|.
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 345789999999999999999999999999999999973 499999999999999999999999999999998
Q ss_pred CCCCC
Q 007417 226 PSEDN 230 (604)
Q Consensus 226 ~~~~~ 230 (604)
.+...
T Consensus 77 ~a~~~ 81 (90)
T 2dnp_A 77 LSTKG 81 (90)
T ss_dssp ESCCC
T ss_pred ECCCC
Confidence 77653
No 292
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2.4e-14 Score=121.94 Aligned_cols=76 Identities=24% Similarity=0.410 Sum_probs=70.3
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEee
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
..++|||+|||..+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+|+..||+..|.|+.|.|.++.
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 97 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 97 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecC
Confidence 3579999999999999999999999999999999876 7899999999999999999999999999999998764
Q ss_pred ec
Q 007417 407 RL 408 (604)
Q Consensus 407 ~~ 408 (604)
..
T Consensus 98 ~~ 99 (109)
T 1x4g_A 98 ES 99 (109)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 293
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.51 E-value=3.5e-15 Score=133.81 Aligned_cols=84 Identities=21% Similarity=0.340 Sum_probs=72.2
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEE--E---eecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCc
Q 007417 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVR--L---HKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGK 220 (604)
Q Consensus 146 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~--i---~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~ 220 (604)
.....++|||+|||+++|+++|+++|++||.|..|. + ++...+++++|||||+|.+.++|.+|+..||+..|.|+
T Consensus 41 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 345789999999999999999999999999987641 1 11124689999999999999999999999999999999
Q ss_pred ccccCCCCC
Q 007417 221 RCGTAPSED 229 (604)
Q Consensus 221 ~i~v~~~~~ 229 (604)
.|.|..+..
T Consensus 121 ~l~V~~a~~ 129 (143)
T 3egn_A 121 PMVVQFARS 129 (143)
T ss_dssp ECEEEECCC
T ss_pred EEEEEECCC
Confidence 999887754
No 294
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=1.3e-14 Score=123.88 Aligned_cols=75 Identities=16% Similarity=0.154 Sum_probs=69.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCCC
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~ 228 (604)
..++|||+|||+++|+++|+++|++||.|..|.|+. +++||||+|.+.++|.+|+..||+..|.|+.|.|.++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 568999999999999999999999999999999863 57899999999999999999999999999999988765
Q ss_pred C
Q 007417 229 D 229 (604)
Q Consensus 229 ~ 229 (604)
.
T Consensus 83 ~ 83 (111)
T 1whx_A 83 I 83 (111)
T ss_dssp T
T ss_pred C
Confidence 4
No 295
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=4.5e-14 Score=117.94 Aligned_cols=74 Identities=28% Similarity=0.467 Sum_probs=67.4
Q ss_pred hccccccccCCCCcccChhhHHhhhccc--CCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEE
Q 007417 325 MAHVKTVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 402 (604)
Q Consensus 325 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~--G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v 402 (604)
....++|||+|||+.+++++|+++|++| |.|..|.++ +|||||+|.+.++|.+|+..||+..|.|+.|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3456899999999999999999999999 999998874 679999999999999999999999999999888
Q ss_pred EEee
Q 007417 403 KLRA 406 (604)
Q Consensus 403 ~~~~ 406 (604)
.++.
T Consensus 84 ~~a~ 87 (99)
T 2cpd_A 84 TLAK 87 (99)
T ss_dssp ECCC
T ss_pred EECC
Confidence 8763
No 296
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.50 E-value=2.3e-14 Score=120.16 Aligned_cols=74 Identities=16% Similarity=0.362 Sum_probs=69.3
Q ss_pred cccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEeee
Q 007417 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407 (604)
Q Consensus 329 ~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~~ 407 (604)
++|||+|||+.+|+++|+++|++||.|..|.|+.+ ++|||||+|.+.++|.+|+..||+..|.|+.|.|.++..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 74 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTG 74 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccC
Confidence 47999999999999999999999999999999877 689999999999999999999999999999999988644
No 297
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=2.7e-14 Score=117.59 Aligned_cols=77 Identities=30% Similarity=0.464 Sum_probs=70.3
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccC
Q 007417 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (604)
Q Consensus 146 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (604)
.....++|||+|||+++|+++|+++|++||.|..|+|++ +||||+|.+.++|.+|+..|++..|.|+.|.|.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 345789999999999999999999999999999999963 399999999999999999999999999999998
Q ss_pred CCCCC
Q 007417 226 PSEDN 230 (604)
Q Consensus 226 ~~~~~ 230 (604)
.+...
T Consensus 78 ~a~~~ 82 (92)
T 2dgt_A 78 LSTSR 82 (92)
T ss_dssp ESSCC
T ss_pred EccCC
Confidence 77653
No 298
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.50 E-value=8.4e-15 Score=124.35 Aligned_cols=77 Identities=12% Similarity=0.137 Sum_probs=70.4
Q ss_pred cccccCCC----CcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCC----HHH----HHHHHH--HhcCCe
Q 007417 329 KTVFLDGV----PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFST----HEA----AVACIN--AINNKE 394 (604)
Q Consensus 329 ~~l~v~nL----p~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~----~~~----A~~A~~--~lng~~ 394 (604)
+.|+|+|| |+.+++..|+++|++||.|..|.++.|+.||+++|||||+|.+ +.+ |.+|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 58999999 9999999999999999999999999999999999999999996 433 788888 789999
Q ss_pred eCCCccEEEEe
Q 007417 395 FSDGNSKVKLR 405 (604)
Q Consensus 395 ~~g~~~~v~~~ 405 (604)
|.|+.|+|.+.
T Consensus 83 I~Gr~irV~ln 93 (136)
T 2j8a_A 83 IMGFKFEVILN 93 (136)
T ss_dssp ETTEEEEEEEC
T ss_pred ecCcEEEEEEC
Confidence 99999999875
No 299
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.50 E-value=8.1e-15 Score=124.50 Aligned_cols=75 Identities=15% Similarity=0.230 Sum_probs=68.8
Q ss_pred ccccccCCCCcccChhhHHhhhcccC-CEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEee
Q 007417 328 VKTVFLDGVPPHWKENQIRDQIKGYG-DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~F~~~G-~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
..+|||+|||+.+++++|+++|++|| .|..+.|+.. +++|||||+|.+.++|.+||+.|||..|.|+.|.|.++.
T Consensus 28 ~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 28 RYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp CEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 47999999999999999999999999 8999988543 479999999999999999999999999999999888763
No 300
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.50 E-value=7.1e-15 Score=124.72 Aligned_cols=79 Identities=11% Similarity=0.085 Sum_probs=73.4
Q ss_pred cccccccCCCCcccChhhHHhhhcccCC---EEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEE
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGD---VIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 403 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~---v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~ 403 (604)
..++|||+|||+.+|+++|+++|+.||. |..|.|++++. |+++|||||+|.+.++|.+||. ||+..|.|+.|.|.
T Consensus 10 ~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVY 87 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEE
Confidence 4578999999999999999999999998 89999999987 9999999999999999999999 99999999999998
Q ss_pred Eeee
Q 007417 404 LRAR 407 (604)
Q Consensus 404 ~~~~ 407 (604)
++..
T Consensus 88 ~a~~ 91 (107)
T 2lmi_A 88 EINN 91 (107)
T ss_dssp ECCH
T ss_pred ECCH
Confidence 7643
No 301
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=4e-14 Score=120.82 Aligned_cols=76 Identities=11% Similarity=0.164 Sum_probs=70.3
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEee
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
..++|||+|||+.+++++|+++|++||.|..|.|+. ++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 357999999999999999999999999999999874 47899999999999999999999999999999999975
Q ss_pred ec
Q 007417 407 RL 408 (604)
Q Consensus 407 ~~ 408 (604)
..
T Consensus 83 ~~ 84 (111)
T 1whx_A 83 IG 84 (111)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 302
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.49 E-value=1.7e-14 Score=121.23 Aligned_cols=80 Identities=24% Similarity=0.394 Sum_probs=74.7
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEee
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
..++|||+|||+.+++++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|.+|+. ++..|.|+.|.|.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 45799999999999999999999999999999999998 89999999999999999999998 9999999999988876
Q ss_pred ecC
Q 007417 407 RLS 409 (604)
Q Consensus 407 ~~~ 409 (604)
...
T Consensus 85 ~~~ 87 (102)
T 2xs2_A 85 RKQ 87 (102)
T ss_dssp ECC
T ss_pred cCc
Confidence 543
No 303
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=4.6e-14 Score=117.42 Aligned_cols=74 Identities=14% Similarity=0.339 Sum_probs=68.6
Q ss_pred ccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeC--CCccEEEEe
Q 007417 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS--DGNSKVKLR 405 (604)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~--g~~~~v~~~ 405 (604)
.++|||+|||+.+++++|+++|++||.|..|.++.+ +|||||+|.+.++|.+|+..||+..|. |+.|.|.++
T Consensus 17 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a 90 (97)
T 1why_A 17 TTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFA 90 (97)
T ss_dssp CSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEEC
Confidence 479999999999999999999999999999998754 789999999999999999999999999 999999886
Q ss_pred ee
Q 007417 406 AR 407 (604)
Q Consensus 406 ~~ 407 (604)
..
T Consensus 91 ~~ 92 (97)
T 1why_A 91 KS 92 (97)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 304
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.49 E-value=3.5e-14 Score=119.54 Aligned_cols=74 Identities=26% Similarity=0.442 Sum_probs=68.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCC
Q 007417 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (604)
Q Consensus 148 ~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (604)
...++|||+|||+++|+++|+++|++||.|..|+|+ ++||||+|.+.++|.+|+..|++..|.|+.|.|..+
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 467899999999999999999999999999999986 459999999999999999999999999999998877
Q ss_pred CC
Q 007417 228 ED 229 (604)
Q Consensus 228 ~~ 229 (604)
..
T Consensus 81 ~~ 82 (103)
T 2dgu_A 81 KP 82 (103)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 305
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=4e-14 Score=118.28 Aligned_cols=75 Identities=20% Similarity=0.461 Sum_probs=69.5
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEee
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
..++|||+|||+.+++++|+++|++||.|..|.|+++ +|||||+|.+.++|.+|+..||+..|.|+.|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpj_A 14 QRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFAC 87 (99)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcC
Confidence 4579999999999999999999999999999999754 7899999999999999999999999999999998864
Q ss_pred e
Q 007417 407 R 407 (604)
Q Consensus 407 ~ 407 (604)
.
T Consensus 88 ~ 88 (99)
T 2cpj_A 88 H 88 (99)
T ss_dssp C
T ss_pred C
Confidence 3
No 306
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=8.2e-14 Score=111.83 Aligned_cols=79 Identities=23% Similarity=0.379 Sum_probs=69.5
Q ss_pred CCCCE-EEEcCCCCCCCHHH----HHHHhhcc-CCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcc
Q 007417 148 KKEHE-IFIGGLDRDATQED----VRKVFERI-GEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKR 221 (604)
Q Consensus 148 ~~~~~-vfV~nLp~~~te~d----L~~~F~~~-G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~ 221 (604)
.++.| |||+|||+.+++++ |+++|++| |+|.+| |+ |+|||.|.+.++|.+|++.|++..|.||.
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 34666 99999999999988 55899999 599988 33 99999999999999999999999999999
Q ss_pred cccCCCCCCCcceec
Q 007417 222 CGTAPSEDNDTLFVG 236 (604)
Q Consensus 222 i~v~~~~~~~~l~v~ 236 (604)
|+|..++..+.++..
T Consensus 76 i~v~~A~~~sd~~~~ 90 (96)
T 2diu_A 76 IIVSFTPKNRELCET 90 (96)
T ss_dssp CEEESSCCSCCCCCC
T ss_pred EEEEecCCCcceeEe
Confidence 999999887766553
No 307
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.49 E-value=1.1e-14 Score=121.02 Aligned_cols=78 Identities=21% Similarity=0.392 Sum_probs=70.3
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCC
Q 007417 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (604)
Q Consensus 147 ~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (604)
....++|||+|||+.+|+++|+++|++||.|..+ ..+++++|||||+|.+.++|.+|+..|++..|.|+.|.|..
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3467899999999999999999999999988666 35689999999999999999999999999999999999887
Q ss_pred CCC
Q 007417 227 SED 229 (604)
Q Consensus 227 ~~~ 229 (604)
+.+
T Consensus 88 a~~ 90 (96)
T 1fjc_A 88 TGE 90 (96)
T ss_dssp CSS
T ss_pred cCC
Confidence 654
No 308
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=1.2e-14 Score=125.85 Aligned_cols=77 Identities=10% Similarity=0.106 Sum_probs=70.1
Q ss_pred ccccccCCCCcccChhhHHhhhcccCCE----EEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEE
Q 007417 328 VKTVFLDGVPPHWKENQIRDQIKGYGDV----IRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 403 (604)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v----~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~ 403 (604)
..+|||+|||+.+|+++|+++|++||.| ..|.|+++ .+|+++|||||+|.+.++|.+||.. |+..|.++.|.|.
T Consensus 23 ~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~ 100 (123)
T 2dha_A 23 QVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELF 100 (123)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEE
Confidence 4689999999999999999999999875 68999998 4899999999999999999999985 9999999988887
Q ss_pred Eee
Q 007417 404 LRA 406 (604)
Q Consensus 404 ~~~ 406 (604)
.+.
T Consensus 101 ~a~ 103 (123)
T 2dha_A 101 RST 103 (123)
T ss_dssp EEC
T ss_pred ECC
Confidence 653
No 309
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=7e-14 Score=116.78 Aligned_cols=75 Identities=25% Similarity=0.418 Sum_probs=69.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcc--CCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccC
Q 007417 148 KKEHEIFIGGLDRDATQEDVRKVFERI--GEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (604)
Q Consensus 148 ~~~~~vfV~nLp~~~te~dL~~~F~~~--G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (604)
...++|||+|||+++|+++|+++|++| |.|..|+++ +|||||+|.+.++|.+|+..|++..|.|+.|.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 367999999999999999999999999 999999874 6799999999999999999999999999999998
Q ss_pred CCCCC
Q 007417 226 PSEDN 230 (604)
Q Consensus 226 ~~~~~ 230 (604)
.+.+.
T Consensus 85 ~a~~~ 89 (99)
T 2cpd_A 85 LAKPV 89 (99)
T ss_dssp CCCCC
T ss_pred ECCCC
Confidence 87654
No 310
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=4.3e-14 Score=114.43 Aligned_cols=73 Identities=21% Similarity=0.399 Sum_probs=68.5
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh-cCCeeCCCccEEEEe
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI-NNKEFSDGNSKVKLR 405 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~l-ng~~~~g~~~~v~~~ 405 (604)
..++|||+|||..+++++|+++|++||.|..|.++++ +|||||+|.+.++|.+|+..| |+..|.|+.|.|.++
T Consensus 11 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 11 TITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp SCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 4579999999999999999999999999999999864 799999999999999999999 999999999999875
No 311
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=3e-14 Score=120.71 Aligned_cols=77 Identities=17% Similarity=0.260 Sum_probs=67.4
Q ss_pred cccccc--CCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCee-----CCCcc
Q 007417 328 VKTVFL--DGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF-----SDGNS 400 (604)
Q Consensus 328 ~~~l~v--~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~-----~g~~~ 400 (604)
+++||| +||++.+++++|+++|++||.|..|.|+. .+|||||+|.+.++|.+|++.|||+.| .++.|
T Consensus 25 t~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l 98 (114)
T 2cq2_A 25 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 98 (114)
T ss_dssp CSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEE
Confidence 468999 77999999999999999999999998864 279999999999999999999999998 67778
Q ss_pred EEEEeeecCC
Q 007417 401 KVKLRARLSN 410 (604)
Q Consensus 401 ~v~~~~~~~~ 410 (604)
.|.++.....
T Consensus 99 ~v~~a~~~p~ 108 (114)
T 2cq2_A 99 YLNFVEKVQW 108 (114)
T ss_dssp EEEEESCCCC
T ss_pred EEEecccCcc
Confidence 8877654433
No 312
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=5.4e-14 Score=115.74 Aligned_cols=72 Identities=25% Similarity=0.533 Sum_probs=66.9
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEee
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
..++|||+|||+.+++++|+++|++||.|..|.|++ +||||+|.+.++|.+|+..||+..|.|+.|.|.++.
T Consensus 9 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 80 (92)
T 2dgt_A 9 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLST 80 (92)
T ss_dssp SSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 357999999999999999999999999999999973 499999999999999999999999999998888763
No 313
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.48 E-value=5e-14 Score=149.21 Aligned_cols=81 Identities=19% Similarity=0.395 Sum_probs=77.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCCC
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~ 228 (604)
..++|||+|||+.+|+++|+++|++||.|+.|.|+.++.|++++|||||+|.+.++|.+||..||+..|.|+.|.|.++.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred C
Q 007417 229 D 229 (604)
Q Consensus 229 ~ 229 (604)
.
T Consensus 181 ~ 181 (437)
T 3pgw_S 181 G 181 (437)
T ss_pred C
Confidence 4
No 314
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.48 E-value=4.6e-14 Score=121.38 Aligned_cols=106 Identities=25% Similarity=0.355 Sum_probs=92.7
Q ss_pred CCCCCCcceecccCCCCcHHHHHHHHHhcCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCeecCCC
Q 007417 226 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 305 (604)
Q Consensus 226 ~~~~~~~l~v~nlp~~~te~~l~~~f~~~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~g~~ 305 (604)
++...++|||+|||+.+|+++|+++|+.||. |..|.++.+ +.++|||||+|.+.++|.+|+..|++..+ .
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~--v~~v~i~~~----~~~~g~afV~f~~~~~A~~A~~~l~g~~~----~ 73 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGP--IRQIRVGNT----PETRGTAYVVYEDIFDAKNAVDHLSGFNV----S 73 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSC--EEEEEEECS----TTTTTCEEEEESSHHHHHHHHHHHTTCBS----S
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC--eEEEEEeeC----CCCCcEEEEEECCHHHHHHHHHHcCCCEE----C
Confidence 3456789999999999999999999999999 999999865 45689999999999999999999999988 5
Q ss_pred CcceeecccCCCCCCChhhhccccccccCCCCcccChhhHHhhhcccCC
Q 007417 306 ERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGD 354 (604)
Q Consensus 306 ~r~l~v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~ 354 (604)
++.|.|.++.+... .++++...++++|.++|++||.
T Consensus 74 g~~l~v~~a~~~~~-------------~~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 74 NRYLVVLYYNANRA-------------FQKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp SCBCEEEECCHHHH-------------TTTSCHHHHHHHHHHHHHHHCC
T ss_pred CeEEEEEEecCChh-------------hhhhhHhHhHHHHHHHHHHhCC
Confidence 79999999875321 1678888999999999999983
No 315
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=5.4e-14 Score=116.24 Aligned_cols=72 Identities=15% Similarity=0.362 Sum_probs=65.2
Q ss_pred ccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEe
Q 007417 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (604)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~ 405 (604)
.++|||+|||+.+++++|+++|++||.|..| +.++.+++ ||||+|.+.++|.+||. ||+..|.|+.|.|.++
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 4689999999999999999999999999987 55655655 99999999999999999 9999999999888754
No 316
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.47 E-value=3.4e-14 Score=122.14 Aligned_cols=69 Identities=20% Similarity=0.377 Sum_probs=63.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCccccc
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v 224 (604)
..++|||+|||+++|+++|+++|++||+|..|.|+.+ |||||+|.+.++|++||+.||+..|.|+.|.+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~ 83 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGET 83 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeee
Confidence 5689999999999999999999999999999999755 89999999999999999999999999998543
No 317
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.47 E-value=5.4e-15 Score=124.06 Aligned_cols=78 Identities=12% Similarity=0.242 Sum_probs=71.6
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEee
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
..++|||+|||+.+++++|+++|++||.|.. .++.+..+++++|||||+|.+.++|.+||+ ||+..|.|+.|.|.++.
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 3579999999999999999999999999887 677777789999999999999999999998 99999999999998763
No 318
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.47 E-value=2.9e-14 Score=123.72 Aligned_cols=77 Identities=18% Similarity=0.267 Sum_probs=70.1
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEE--EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEE
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~--~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~ 404 (604)
..++|||+|||+.+|+++|+++|++| .|+ .|.|++++. |+++|||||+|.+.++|.+||. +++..|.|+.|.|..
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFK 117 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEE
Confidence 34789999999999999999999999 676 899999987 9999999999999999999998 577999999998877
Q ss_pred ee
Q 007417 405 RA 406 (604)
Q Consensus 405 ~~ 406 (604)
+.
T Consensus 118 a~ 119 (126)
T 2hgm_A 118 SS 119 (126)
T ss_dssp EC
T ss_pred CC
Confidence 53
No 319
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.47 E-value=4.2e-14 Score=131.14 Aligned_cols=83 Identities=7% Similarity=0.153 Sum_probs=77.7
Q ss_pred ccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEe
Q 007417 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (604)
Q Consensus 326 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~ 405 (604)
...++|||+|||+.+++++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 346899999999999999999999999999999999998 8999999999999999999999999999999999999997
Q ss_pred eecC
Q 007417 406 ARLS 409 (604)
Q Consensus 406 ~~~~ 409 (604)
....
T Consensus 165 ~~~~ 168 (177)
T 2f3j_A 165 ASQI 168 (177)
T ss_dssp SSGG
T ss_pred cCCC
Confidence 6543
No 320
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.46 E-value=9.7e-14 Score=115.36 Aligned_cols=72 Identities=14% Similarity=0.329 Sum_probs=67.5
Q ss_pred cccccccCCCCc-ccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEe
Q 007417 327 HVKTVFLDGVPP-HWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (604)
Q Consensus 327 ~~~~l~v~nLp~-~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~ 405 (604)
..++|||+|||+ .+++++|+++|++||.|..|.|. +|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 21 ~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 92 (97)
T 2xnq_A 21 MKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVS 92 (97)
T ss_dssp TTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 468999999998 99999999999999999999983 789999999999999999999999999999999886
Q ss_pred e
Q 007417 406 A 406 (604)
Q Consensus 406 ~ 406 (604)
.
T Consensus 93 ~ 93 (97)
T 2xnq_A 93 S 93 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 321
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.46 E-value=7.7e-14 Score=118.97 Aligned_cols=73 Identities=29% Similarity=0.583 Sum_probs=68.3
Q ss_pred CCCEEEEcCCCCC-CCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCC
Q 007417 149 KEHEIFIGGLDRD-ATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (604)
Q Consensus 149 ~~~~vfV~nLp~~-~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (604)
..++|||+|||++ +|+++|+++|++||.|..|+| ++|||||+|.+.++|.+|+..|++..|.|+.|.|..+
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 4689999999999 999999999999999999998 4799999999999999999999999999999999877
Q ss_pred CC
Q 007417 228 ED 229 (604)
Q Consensus 228 ~~ 229 (604)
..
T Consensus 98 ~~ 99 (110)
T 1wf1_A 98 GE 99 (110)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 322
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=6.9e-14 Score=116.31 Aligned_cols=76 Identities=13% Similarity=0.328 Sum_probs=68.6
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEee
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
..++|||+|||+.+++++|+++|++||.|. +.++.+ +++|||||+|.+.++|.+|+..||+..|.|+.|.|.++.
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 357999999999999999999999999997 666653 578999999999999999999999999999999998864
Q ss_pred e
Q 007417 407 R 407 (604)
Q Consensus 407 ~ 407 (604)
.
T Consensus 93 ~ 93 (97)
T 2e5j_A 93 Q 93 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 323
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=5e-14 Score=116.91 Aligned_cols=78 Identities=15% Similarity=0.183 Sum_probs=70.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEE-EEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCC
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEV-RLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v-~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (604)
..++|||+|||+++|+++|+++|++||.|..| .|+.++.++. |||+|.+.++|.+|+..|++..|.|+.|.|..+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 57899999999999999999999999999999 4887765543 999999999999999999999999999998877
Q ss_pred CCC
Q 007417 228 EDN 230 (604)
Q Consensus 228 ~~~ 230 (604)
.+.
T Consensus 90 ~~~ 92 (96)
T 2e44_A 90 PDE 92 (96)
T ss_dssp CCC
T ss_pred Ccc
Confidence 653
No 324
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=8.5e-14 Score=114.04 Aligned_cols=73 Identities=23% Similarity=0.423 Sum_probs=67.4
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEee
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
..++|||+|||+.+|+++|+++|++||.|..|.|++ +||||+|.+.++|.+|+..||+..|.|+.|.|.++.
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 79 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELST 79 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECC
Confidence 357999999999999999999999999999999973 499999999999999999999999999999998864
Q ss_pred e
Q 007417 407 R 407 (604)
Q Consensus 407 ~ 407 (604)
.
T Consensus 80 ~ 80 (90)
T 2dnp_A 80 K 80 (90)
T ss_dssp C
T ss_pred C
Confidence 3
No 325
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.45 E-value=4.2e-14 Score=117.64 Aligned_cols=78 Identities=14% Similarity=0.390 Sum_probs=71.8
Q ss_pred cccccccCCCCcccChhhHH----hhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEE
Q 007417 327 HVKTVFLDGVPPHWKENQIR----DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 402 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~----~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v 402 (604)
..++|||+|||+.+++++|+ ++|++||.|..|.++. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 45799999999999999999 9999999999999874 4778999999999999999999999999999999999
Q ss_pred EEeee
Q 007417 403 KLRAR 407 (604)
Q Consensus 403 ~~~~~ 407 (604)
.++..
T Consensus 84 ~~a~~ 88 (97)
T 1nu4_A 84 QYAKT 88 (97)
T ss_dssp EECSS
T ss_pred EEccC
Confidence 88644
No 326
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.45 E-value=9.5e-14 Score=112.89 Aligned_cols=71 Identities=18% Similarity=0.459 Sum_probs=65.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcc----C-------CeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCee
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFERI----G-------EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVI 217 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~~----G-------~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l 217 (604)
..++|||+|||+++|+++|+++|++| | .|.+|++.++ +|||||+|.+.++|.+|+ .|++..|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 56899999999999999999999999 8 9999999643 899999999999999999 8999999
Q ss_pred eCcccccCC
Q 007417 218 CGKRCGTAP 226 (604)
Q Consensus 218 ~g~~i~v~~ 226 (604)
.|+.|.|..
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999988753
No 327
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.45 E-value=5.4e-14 Score=116.73 Aligned_cols=75 Identities=11% Similarity=0.228 Sum_probs=68.1
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEee
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
..++|||+|||+.+++++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.++.
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 45799999999999999999999999987655 3468899999999999999999999999999999998888763
No 328
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=4.6e-14 Score=116.42 Aligned_cols=75 Identities=25% Similarity=0.408 Sum_probs=67.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCC-eEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCC-CeeeCcccccC
Q 007417 148 KKEHEIFIGGLDRDATQEDVRKVFERIGE-VIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKN-PVICGKRCGTA 225 (604)
Q Consensus 148 ~~~~~vfV~nLp~~~te~dL~~~F~~~G~-V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~-~~l~g~~i~v~ 225 (604)
...++|||+|||+++|+++|+++|++||. |..+.+. ++|||||+|.+.++|.+|+..|++ ..|.|+.|.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 46789999999999999999999999999 6666552 489999999999999999999999 99999999998
Q ss_pred CCCC
Q 007417 226 PSED 229 (604)
Q Consensus 226 ~~~~ 229 (604)
.+..
T Consensus 79 ~a~~ 82 (93)
T 2cqh_A 79 YSVS 82 (93)
T ss_dssp ECCC
T ss_pred EccC
Confidence 7765
No 329
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.44 E-value=8.3e-14 Score=118.21 Aligned_cols=73 Identities=16% Similarity=0.396 Sum_probs=68.0
Q ss_pred ccccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEe
Q 007417 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (604)
Q Consensus 326 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~ 405 (604)
...++|||+|||+.+++++|+++|++||.|..|.|+ +|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYS 100 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 346899999999999999999999999999999987 789999999999999999999999999999888875
Q ss_pred e
Q 007417 406 A 406 (604)
Q Consensus 406 ~ 406 (604)
.
T Consensus 101 ~ 101 (108)
T 2jvo_A 101 K 101 (108)
T ss_dssp S
T ss_pred c
Confidence 3
No 330
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=2.1e-13 Score=113.31 Aligned_cols=76 Identities=20% Similarity=0.378 Sum_probs=69.3
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCC
Q 007417 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (604)
Q Consensus 147 ~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~ 226 (604)
....++|||+|| ++|+++|+++|++||.|..|.|. +++|||||+|.+.++|.+|+..|++..|.|+.|.|..
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 346789999996 89999999999999999999994 6789999999999999999999999999999999988
Q ss_pred CCCC
Q 007417 227 SEDN 230 (604)
Q Consensus 227 ~~~~ 230 (604)
+...
T Consensus 84 a~~~ 87 (97)
T 1x5p_A 84 ARKQ 87 (97)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 7653
No 331
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=6e-14 Score=115.69 Aligned_cols=73 Identities=15% Similarity=0.338 Sum_probs=65.3
Q ss_pred cccccccCCCCcccChhhHHhhhcccCC-EEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcC-CeeCCCccEEEE
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGD-VIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINN-KEFSDGNSKVKL 404 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~-v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng-~~~~g~~~~v~~ 404 (604)
..++|||+|||+.+|+++|+++|++||. |..+.+. ++|||||+|.+.++|.+|+..||+ ..|.|+.|.|.+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 3579999999999999999999999999 5555552 489999999999999999999999 999999999988
Q ss_pred ee
Q 007417 405 RA 406 (604)
Q Consensus 405 ~~ 406 (604)
+.
T Consensus 80 a~ 81 (93)
T 2cqh_A 80 SV 81 (93)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 332
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.44 E-value=2.8e-13 Score=113.96 Aligned_cols=80 Identities=19% Similarity=0.240 Sum_probs=70.4
Q ss_pred cccccccCCCCc-----ccChhhHHhhhcccCCEEEEEEeecCCC-CCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCcc
Q 007417 327 HVKTVFLDGVPP-----HWKENQIRDQIKGYGDVIRIVLARNMST-AKRKDYGFIDFSTHEAAVACINAINNKEFSDGNS 400 (604)
Q Consensus 327 ~~~~l~v~nLp~-----~~t~~~l~~~F~~~G~v~~v~i~~d~~~-g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~ 400 (604)
.+++|+|+||.. ..++++|+++|++||.|..|.|++++.+ ++++|||||+|.++++|.+|+..|||+.|.||.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 357899999963 2368999999999999999999998654 6899999999999999999999999999999999
Q ss_pred EEEEee
Q 007417 401 KVKLRA 406 (604)
Q Consensus 401 ~v~~~~ 406 (604)
.|.++.
T Consensus 87 ~v~~a~ 92 (105)
T 2pe8_A 87 KACFYN 92 (105)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 998863
No 333
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.44 E-value=2.9e-13 Score=113.84 Aligned_cols=81 Identities=11% Similarity=0.187 Sum_probs=72.4
Q ss_pred CCCCEEEEcCCCC-----CCCHHHHHHHhhccCCeEEEEEeecCCC-CCCcceEEEEEeehHHHHHHHHhcCCCeeeCcc
Q 007417 148 KKEHEIFIGGLDR-----DATQEDVRKVFERIGEVIEVRLHKNFST-NRNKGYAFVKFANKEHAKRALTEMKNPVICGKR 221 (604)
Q Consensus 148 ~~~~~vfV~nLp~-----~~te~dL~~~F~~~G~V~~v~i~~d~~t-g~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~ 221 (604)
.++++|+|+||.. +.++++|+++|++||+|.+|+|++++.+ ++++|||||+|.+.++|.+|+..||+..+.||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4689999999973 3478999999999999999999998764 689999999999999999999999999999999
Q ss_pred cccCCCC
Q 007417 222 CGTAPSE 228 (604)
Q Consensus 222 i~v~~~~ 228 (604)
|.|..+.
T Consensus 86 i~v~~a~ 92 (105)
T 2pe8_A 86 VKACFYN 92 (105)
T ss_dssp CEEEECC
T ss_pred EEEEEcC
Confidence 9887764
No 334
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.44 E-value=5.4e-14 Score=117.94 Aligned_cols=72 Identities=25% Similarity=0.427 Sum_probs=67.3
Q ss_pred ccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEe
Q 007417 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (604)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~ 405 (604)
.++|||+|||..+++++|+++|++||.|..|.++ +++|||||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 27 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 4789999999999999999999999999999997 35899999999999999999999999999999888765
No 335
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=1e-13 Score=117.42 Aligned_cols=73 Identities=21% Similarity=0.346 Sum_probs=63.9
Q ss_pred cCCCCEEEE--cCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCee-----eC
Q 007417 147 IKKEHEIFI--GGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVI-----CG 219 (604)
Q Consensus 147 ~~~~~~vfV--~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l-----~g 219 (604)
..+.++||| +||++++|+++|+++|++||.|..|.|+. .+|||||+|.+.++|++|++.||+..| .+
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 346789999 77999999999999999999999998863 379999999999999999999999988 56
Q ss_pred cccccC
Q 007417 220 KRCGTA 225 (604)
Q Consensus 220 ~~i~v~ 225 (604)
+.|.|.
T Consensus 96 ~~l~v~ 101 (114)
T 2cq2_A 96 ITLYLN 101 (114)
T ss_dssp EECEEE
T ss_pred cEEEEE
Confidence 666543
No 336
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.43 E-value=1.5e-13 Score=112.10 Aligned_cols=73 Identities=18% Similarity=0.332 Sum_probs=67.7
Q ss_pred ccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEeee
Q 007417 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407 (604)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~~ 407 (604)
.++|||+|||+.+++++|+++|++| .|..|.|. +++|||||+|.+.++|.+|+..||+..|.|+.|.|.++..
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 4789999999999999999999999 99999884 5799999999999999999999999999999999988633
No 337
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.43 E-value=3e-13 Score=117.22 Aligned_cols=76 Identities=17% Similarity=0.248 Sum_probs=68.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcce-EEEEEeehHHHHHHHHhcCCCeeeC--cccccCC
Q 007417 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGY-AFVKFANKEHAKRALTEMKNPVICG--KRCGTAP 226 (604)
Q Consensus 150 ~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~-afV~F~~~e~A~~Al~~l~~~~l~g--~~i~v~~ 226 (604)
--.|||+||++.+|+++|+++|++||.|.+|+|+.. ++|| |||+|.+.++|.+|++.|++..|.| +.|+|..
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 102 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEe
Confidence 346779999999999999999999999999998754 3677 9999999999999999999999998 8888888
Q ss_pred CCCC
Q 007417 227 SEDN 230 (604)
Q Consensus 227 ~~~~ 230 (604)
++..
T Consensus 103 ak~~ 106 (130)
T 3zzy_A 103 SKLT 106 (130)
T ss_dssp CSCS
T ss_pred cCCC
Confidence 8754
No 338
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=1.6e-13 Score=113.87 Aligned_cols=77 Identities=17% Similarity=0.275 Sum_probs=69.5
Q ss_pred ccccccCCCCcccChhhHHhhhcccCCEEEE-EEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEee
Q 007417 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRI-VLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v-~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
.++|||+|||+.+++++|+++|++||.|..| .|+.++.++ .|||+|.+.++|.+|+..||+..|.|+.|.|.++.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 90 (96)
T 2e44_A 15 IRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIP 90 (96)
T ss_dssp CCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 4789999999999999999999999999999 588876543 49999999999999999999999999999998875
Q ss_pred ec
Q 007417 407 RL 408 (604)
Q Consensus 407 ~~ 408 (604)
..
T Consensus 91 ~~ 92 (96)
T 2e44_A 91 DE 92 (96)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 339
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.42 E-value=2.2e-13 Score=111.18 Aligned_cols=74 Identities=27% Similarity=0.454 Sum_probs=60.6
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCe--eeCccccc
Q 007417 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPV--ICGKRCGT 224 (604)
Q Consensus 147 ~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~--l~g~~i~v 224 (604)
.....+|||+|||+++|+++|+++|++||.|.+|+|+++ ++|||||+|.+.++|.+ +++.. +.|+.|.|
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v 78 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHI 78 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEE
Confidence 346899999999999999999999999999999999864 79999999999999984 34444 45888877
Q ss_pred CCCCC
Q 007417 225 APSED 229 (604)
Q Consensus 225 ~~~~~ 229 (604)
..+.+
T Consensus 79 ~~a~~ 83 (89)
T 3d2w_A 79 SNAEP 83 (89)
T ss_dssp EECC-
T ss_pred EEcCC
Confidence 76653
No 340
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.42 E-value=2.8e-13 Score=121.97 Aligned_cols=78 Identities=17% Similarity=0.196 Sum_probs=69.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeC--cccccCC
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICG--KRCGTAP 226 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g--~~i~v~~ 226 (604)
.-.+|||+||++.+|+++|+++|++||.|.+|+|+.. .++|||||+|.+.++|.+|++.|++..|.| +.|+|.+
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 3457899999999999999999999999999999653 368899999999999999999999999976 8999888
Q ss_pred CCCC
Q 007417 227 SEDN 230 (604)
Q Consensus 227 ~~~~ 230 (604)
++..
T Consensus 121 Ak~~ 124 (164)
T 1sjr_A 121 SKLT 124 (164)
T ss_dssp CSSS
T ss_pred ecCC
Confidence 7653
No 341
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.41 E-value=8.2e-13 Score=124.29 Aligned_cols=123 Identities=14% Similarity=0.251 Sum_probs=88.9
Q ss_pred CHHHHHHHHHHhCCCCeecCCCCcceeecccCCCCCCCh--hhhccccccccCCCCcccChhhHHhhhcccCCEEEEEEe
Q 007417 284 CHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDP--EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLA 361 (604)
Q Consensus 284 ~~e~A~~Al~~l~~~~~~~g~~~r~l~v~~a~~~~~~~~--~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~ 361 (604)
+.+....|+.......+.....+..++-....|...... ......++|||+|||+.+|+++|+++|++||.|..|.|+
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 142 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 142 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEE
Confidence 456677777655334443333333333221122211111 122345789999999999999999999999999999999
Q ss_pred ecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEeeec
Q 007417 362 RNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARL 408 (604)
Q Consensus 362 ~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~~~ 408 (604)
++. +++++|||||+|.+.++|.+|+..+ +..|.|+.|.|.++..+
T Consensus 143 ~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 143 RTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDY 187 (193)
T ss_dssp ECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC
T ss_pred ECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHH
Confidence 986 4889999999999999999999755 46999999999876443
No 342
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.41 E-value=5.8e-13 Score=119.90 Aligned_cols=76 Identities=7% Similarity=0.181 Sum_probs=68.3
Q ss_pred ccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCC--CccEEEEe
Q 007417 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD--GNSKVKLR 405 (604)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g--~~~~v~~~ 405 (604)
..+|||+||++.+|+++|+++|++||.|.+|.|+.+ .++|||||+|.+.++|..|++.|||..|.+ +.|+|.++
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 467999999999999999999999999999999754 258999999999999999999999999966 88888876
Q ss_pred ee
Q 007417 406 AR 407 (604)
Q Consensus 406 ~~ 407 (604)
..
T Consensus 122 k~ 123 (164)
T 1sjr_A 122 KL 123 (164)
T ss_dssp SS
T ss_pred cC
Confidence 44
No 343
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.40 E-value=4e-14 Score=126.86 Aligned_cols=81 Identities=16% Similarity=0.230 Sum_probs=69.6
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEE--E---eecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccE
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIV--L---ARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSK 401 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~--i---~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~ 401 (604)
..++|||+|||+.+|+++|+++|++||.|..+. + ++...+++++|||||+|.+.++|.+||..|||..|.|+.|.
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~ 123 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMV 123 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 357899999999999999999999999887641 1 11124688999999999999999999999999999999999
Q ss_pred EEEeee
Q 007417 402 VKLRAR 407 (604)
Q Consensus 402 v~~~~~ 407 (604)
|.++..
T Consensus 124 V~~a~~ 129 (143)
T 3egn_A 124 VQFARS 129 (143)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 998744
No 344
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.40 E-value=6.5e-13 Score=115.13 Aligned_cols=74 Identities=7% Similarity=0.244 Sum_probs=65.8
Q ss_pred ccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceE-EEEEeCCHHHHHHHHHHhcCCeeCC--CccEEEE
Q 007417 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDY-GFIDFSTHEAAVACINAINNKEFSD--GNSKVKL 404 (604)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~-afV~F~~~~~A~~A~~~lng~~~~g--~~~~v~~ 404 (604)
..+|||+||++.+|+++|+++|++||.|.+|.|+.. ++|| |||+|.+.++|.+|++.|||..|.| +.|+|.+
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 102 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEe
Confidence 457889999999999999999999999999998764 3688 9999999999999999999999998 5666666
Q ss_pred ee
Q 007417 405 RA 406 (604)
Q Consensus 405 ~~ 406 (604)
+.
T Consensus 103 ak 104 (130)
T 3zzy_A 103 SK 104 (130)
T ss_dssp CS
T ss_pred cC
Confidence 53
No 345
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.40 E-value=4e-13 Score=126.44 Aligned_cols=79 Identities=24% Similarity=0.383 Sum_probs=71.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCCC
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~~ 228 (604)
..++|||+|||+++|+++|+++|++||.|..|+|+++. +++++|||||+|.+.++|.+|+..++ ..|.|+.|.|.+..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKD 185 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhH
Confidence 35899999999999999999999999999999999985 58999999999999999999998654 58999999987665
Q ss_pred C
Q 007417 229 D 229 (604)
Q Consensus 229 ~ 229 (604)
+
T Consensus 186 ~ 186 (193)
T 2voo_A 186 D 186 (193)
T ss_dssp T
T ss_pred H
Confidence 3
No 346
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.39 E-value=1.2e-12 Score=113.03 Aligned_cols=73 Identities=16% Similarity=0.210 Sum_probs=63.8
Q ss_pred ccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceE-EEEEeCCHHHHHHHHHHhcCCeeCCC--ccEEEE
Q 007417 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDY-GFIDFSTHEAAVACINAINNKEFSDG--NSKVKL 404 (604)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~-afV~F~~~~~A~~A~~~lng~~~~g~--~~~v~~ 404 (604)
...|||+||++.+++++|+++|++||.|..|.|+.. .|| |||+|.+.++|..|++.|||..|.|+ .|+|.+
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 456789999999999999999999999999999652 386 99999999999999999999999884 566665
Q ss_pred ee
Q 007417 405 RA 406 (604)
Q Consensus 405 ~~ 406 (604)
+.
T Consensus 99 Ak 100 (124)
T 2e5i_A 99 AR 100 (124)
T ss_dssp CS
T ss_pred ec
Confidence 43
No 347
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=2.6e-13 Score=116.40 Aligned_cols=73 Identities=22% Similarity=0.393 Sum_probs=64.4
Q ss_pred ccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCC---CCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEE
Q 007417 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMST---AKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 403 (604)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~---g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~ 403 (604)
.++|||+|||+.+++++|+++|++||.|. +.++.+..+ |+++|||||+|.+.++|.+||+.|+ .+.|+.+.+.
T Consensus 8 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 8 SRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp CCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 57899999999999999999999999999 888888777 7999999999999999999999984 3666655443
No 348
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=6.7e-13 Score=110.28 Aligned_cols=72 Identities=15% Similarity=0.371 Sum_probs=65.5
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEee
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
..++|||+|| .+++++|+++|++||.|..|.|. +++|||||+|.+.++|.+||..||+..|.|+.|.|.++.
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 3579999996 89999999999999999999984 468999999999999999999999999999998887753
No 349
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=6.1e-13 Score=106.75 Aligned_cols=72 Identities=14% Similarity=0.266 Sum_probs=63.3
Q ss_pred cccccCCCCcccChhh----HHhhhccc-CCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEE
Q 007417 329 KTVFLDGVPPHWKENQ----IRDQIKGY-GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 403 (604)
Q Consensus 329 ~~l~v~nLp~~~t~~~----l~~~F~~~-G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~ 403 (604)
+.|||+|||+.+++++ |+++|++| |.|..| ++ |||||+|.+.++|.+|++.|||..|.||.|+|.
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~ 79 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVS 79 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEE
Confidence 3499999999999887 55899999 599888 33 999999999999999999999999999999999
Q ss_pred EeeecCC
Q 007417 404 LRARLSN 410 (604)
Q Consensus 404 ~~~~~~~ 410 (604)
++...+.
T Consensus 80 ~A~~~sd 86 (96)
T 2diu_A 80 FTPKNRE 86 (96)
T ss_dssp SSCCSCC
T ss_pred ecCCCcc
Confidence 8755443
No 350
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.38 E-value=1.1e-12 Score=113.11 Aligned_cols=74 Identities=18% Similarity=0.167 Sum_probs=65.8
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcce-EEEEEeehHHHHHHHHhcCCCeeeC--cccccCCCC
Q 007417 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGY-AFVKFANKEHAKRALTEMKNPVICG--KRCGTAPSE 228 (604)
Q Consensus 152 ~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~-afV~F~~~e~A~~Al~~l~~~~l~g--~~i~v~~~~ 228 (604)
.|||+||++.+|+++|+++|++||.|.+|+|+.. .|| |||+|.+.++|.+|+..|++..|.| +.|+|..+.
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 4679999999999999999999999999999652 286 9999999999999999999999988 578888877
Q ss_pred CCC
Q 007417 229 DND 231 (604)
Q Consensus 229 ~~~ 231 (604)
...
T Consensus 101 ~~~ 103 (124)
T 2e5i_A 101 PTR 103 (124)
T ss_dssp CSC
T ss_pred CCc
Confidence 543
No 351
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=1.8e-13 Score=111.56 Aligned_cols=75 Identities=27% Similarity=0.489 Sum_probs=63.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccCCC
Q 007417 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (604)
Q Consensus 148 ~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~~~ 227 (604)
...++|||+|||+++|+++|+++|++||.|..|+|+++ ++|||||+|.+.++|++|+.. ...+.++.|.|..+
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEec
Confidence 35799999999999999999999999999999999754 789999999999999865432 33457888888776
Q ss_pred CC
Q 007417 228 ED 229 (604)
Q Consensus 228 ~~ 229 (604)
.+
T Consensus 76 ~~ 77 (88)
T 1wf0_A 76 EP 77 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 352
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.37 E-value=4.7e-13 Score=108.73 Aligned_cols=70 Identities=16% Similarity=0.447 Sum_probs=65.1
Q ss_pred cccccccCCCCcccChhhHHhhhccc----C-------CEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCee
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGY----G-------DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 395 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~----G-------~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~ 395 (604)
..++|||+|||+.+++++|+++|++| | .|..+.+.++ +|||||+|.+.++|.+|+ .||+..|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 45799999999999999999999999 8 8999998754 799999999999999999 9999999
Q ss_pred CCCccEEE
Q 007417 396 SDGNSKVK 403 (604)
Q Consensus 396 ~g~~~~v~ 403 (604)
.|+.|.|.
T Consensus 78 ~g~~l~V~ 85 (87)
T 2hzc_A 78 QGQSLKIR 85 (87)
T ss_dssp TTEECEEE
T ss_pred CCeEEEEe
Confidence 99998875
No 353
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.37 E-value=6.5e-13 Score=108.37 Aligned_cols=70 Identities=13% Similarity=0.359 Sum_probs=58.8
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeC--CCccEEEE
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS--DGNSKVKL 404 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~--g~~~~v~~ 404 (604)
..++|||+|||+.+|+++|+++|++||.|..|.|+++ ++|||||+|.++++|.+ |++..+. |+.|.|.+
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~ 80 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISN 80 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEE
Confidence 4579999999999999999999999999999999874 79999999999999983 6777665 55544444
Q ss_pred e
Q 007417 405 R 405 (604)
Q Consensus 405 ~ 405 (604)
+
T Consensus 81 a 81 (89)
T 3d2w_A 81 A 81 (89)
T ss_dssp C
T ss_pred c
Confidence 3
No 354
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.35 E-value=9.7e-13 Score=113.90 Aligned_cols=77 Identities=19% Similarity=0.372 Sum_probs=69.6
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccccC
Q 007417 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (604)
Q Consensus 146 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v~ 225 (604)
.....++|||+|| ++|+++|+++|++||.|..|.|. +++|||||+|.+.++|.+|+..|++..|.|+.|.|.
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3457899999996 79999999999999999999995 578999999999999999999999999999999998
Q ss_pred CCCCC
Q 007417 226 PSEDN 230 (604)
Q Consensus 226 ~~~~~ 230 (604)
.+...
T Consensus 107 ~a~~~ 111 (121)
T 2bz2_A 107 IARKQ 111 (121)
T ss_dssp ECCSS
T ss_pred EeCCC
Confidence 77653
No 355
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.33 E-value=1.9e-12 Score=108.97 Aligned_cols=78 Identities=17% Similarity=0.279 Sum_probs=67.7
Q ss_pred ccccccCCC--Cccc--------ChhhHHhhhcccCCEEEEEEeecCCC--CCcceEEEEEeCCHHHHHHHHHHhcCCee
Q 007417 328 VKTVFLDGV--PPHW--------KENQIRDQIKGYGDVIRIVLARNMST--AKRKDYGFIDFSTHEAAVACINAINNKEF 395 (604)
Q Consensus 328 ~~~l~v~nL--p~~~--------t~~~l~~~F~~~G~v~~v~i~~d~~~--g~~~G~afV~F~~~~~A~~A~~~lng~~~ 395 (604)
+++|.|.|+ |..+ ..++|++.|++||.|..|.|+++..+ ++++||+||+|.++++|.+|+..|||+.|
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f 84 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKF 84 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEe
Confidence 467788887 3333 33799999999999999999988765 46899999999999999999999999999
Q ss_pred CCCccEEEEe
Q 007417 396 SDGNSKVKLR 405 (604)
Q Consensus 396 ~g~~~~v~~~ 405 (604)
.||.|.|.+.
T Consensus 85 ~GR~i~v~~~ 94 (105)
T 3v4m_A 85 ANRVVVTKYC 94 (105)
T ss_dssp TTEECEEEEE
T ss_pred CCCEEEEEEe
Confidence 9999999885
No 356
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.32 E-value=2.8e-12 Score=109.97 Aligned_cols=79 Identities=16% Similarity=0.270 Sum_probs=69.1
Q ss_pred cccccccCCCCc--cc---ChhhHHhhhcccCCEEEEEEeecCC----CCCcceEEEEEeCCHHHHHHHHHHhcCCeeCC
Q 007417 327 HVKTVFLDGVPP--HW---KENQIRDQIKGYGDVIRIVLARNMS----TAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397 (604)
Q Consensus 327 ~~~~l~v~nLp~--~~---t~~~l~~~F~~~G~v~~v~i~~d~~----~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g 397 (604)
++++|+|.|+-. .+ .+++|++.|++||.|..|.|+++.. +++++||+||+|.++++|.+|+..|||+.|.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 457889999832 22 3589999999999999999999865 46788999999999999999999999999999
Q ss_pred CccEEEEe
Q 007417 398 GNSKVKLR 405 (604)
Q Consensus 398 ~~~~v~~~ 405 (604)
|.|.|.+.
T Consensus 99 R~i~v~~~ 106 (118)
T 3ue2_A 99 RKVVAEVY 106 (118)
T ss_dssp EECEEEEE
T ss_pred cEEEEEEc
Confidence 99999985
No 357
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.32 E-value=1.9e-12 Score=124.61 Aligned_cols=81 Identities=25% Similarity=0.370 Sum_probs=69.5
Q ss_pred cccccccCCCCccc---------ChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCee--
Q 007417 327 HVKTVFLDGVPPHW---------KENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF-- 395 (604)
Q Consensus 327 ~~~~l~v~nLp~~~---------t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~-- 395 (604)
..++|||+||+..+ ++++|+++|++||.|..|+|+.+ +|||||+|.+.++|..|+++|||..|
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l~~ 206 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTLLL 206 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCCCC
T ss_pred CCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEEec
Confidence 45799999999998 79999999999999999999853 89999999999999999999999999
Q ss_pred ----------CCCccEEEEeeecCCCCC
Q 007417 396 ----------SDGNSKVKLRARLSNPMP 413 (604)
Q Consensus 396 ----------~g~~~~v~~~~~~~~~~~ 413 (604)
.|+.|.|.|+.....|..
T Consensus 207 ~~~~e~~~~~~gr~L~V~wA~~~pnp~~ 234 (240)
T 3u1l_A 207 PSDKEWDDRREGTGLLVKWANEDPDPAA 234 (240)
T ss_dssp TTSTTGGGGGGSCCCEEEECC-------
T ss_pred cccccccccCCCCEEEEEEccCCCCHHH
Confidence 899999999876655443
No 358
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.31 E-value=1.9e-12 Score=112.07 Aligned_cols=74 Identities=15% Similarity=0.366 Sum_probs=67.2
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEee
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
..++|||+|| .+++++|+++|++||.|..|.|. .++|||||+|.+.++|.+|+..||+..|.|+.|.|.++.
T Consensus 38 ~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 109 (121)
T ss_dssp CCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeC
Confidence 4579999996 69999999999999999999985 468999999999999999999999999999999999875
Q ss_pred ec
Q 007417 407 RL 408 (604)
Q Consensus 407 ~~ 408 (604)
..
T Consensus 110 ~~ 111 (121)
T 2bz2_A 110 KQ 111 (121)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 359
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.31 E-value=2e-12 Score=124.45 Aligned_cols=78 Identities=27% Similarity=0.471 Sum_probs=70.2
Q ss_pred cCCCCEEEEcCCCCCC---------CHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCee
Q 007417 147 IKKEHEIFIGGLDRDA---------TQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVI 217 (604)
Q Consensus 147 ~~~~~~vfV~nLp~~~---------te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l 217 (604)
....++|||+||+..+ |+++|+++|++||+|++|+|+. ++|||||+|.+.++|+.|+++|++..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 3468999999999998 7999999999999999999985 489999999999999999999999999
Q ss_pred ------------eCcccccCCCCCC
Q 007417 218 ------------CGKRCGTAPSEDN 230 (604)
Q Consensus 218 ------------~g~~i~v~~~~~~ 230 (604)
.|+.|.|.++...
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC--
T ss_pred eccccccccccCCCCEEEEEEccCC
Confidence 8999999887653
No 360
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.29 E-value=1.6e-12 Score=109.20 Aligned_cols=72 Identities=18% Similarity=0.350 Sum_probs=63.2
Q ss_pred cCCCCcccChhhHHhhh------------cccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCcc
Q 007417 333 LDGVPPHWKENQIRDQI------------KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNS 400 (604)
Q Consensus 333 v~nLp~~~t~~~l~~~F------------~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~ 400 (604)
+.+||+.+++++|++.| ++||.|..|.|+++.. ++++|||||+|.++++|.+|+..|||+.|.|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56677777777776665 9999999999998864 7899999999999999999999999999999999
Q ss_pred EEEEe
Q 007417 401 KVKLR 405 (604)
Q Consensus 401 ~v~~~ 405 (604)
.|.+.
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99874
No 361
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=6.1e-12 Score=107.41 Aligned_cols=84 Identities=17% Similarity=0.298 Sum_probs=71.0
Q ss_pred ccCCCCEEEEcCCCCCCC-----------HHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCC
Q 007417 146 KIKKEHEIFIGGLDRDAT-----------QEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKN 214 (604)
Q Consensus 146 ~~~~~~~vfV~nLp~~~t-----------e~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~ 214 (604)
....+++|+|+||....+ +++|+++|++||.|..|.| .++ .++|||||+|.+.++|.+|+..||+
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 445789999999944332 6899999999999999966 443 4799999999999999999999999
Q ss_pred CeeeCcccccCCCCCCCcc
Q 007417 215 PVICGKRCGTAPSEDNDTL 233 (604)
Q Consensus 215 ~~l~g~~i~v~~~~~~~~l 233 (604)
..|.|+.|.|..+.+....
T Consensus 87 ~~~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 87 RWFGGRQITAQAWDGTTDY 105 (112)
T ss_dssp CEETTEECEEEECCSCCCS
T ss_pred CEECCcEEEEEEeCCCCCc
Confidence 9999999999887664443
No 362
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.28 E-value=5e-12 Score=106.34 Aligned_cols=79 Identities=15% Similarity=0.214 Sum_probs=69.4
Q ss_pred CCCEEEEcCC--CCCCC--------HHHHHHHhhccCCeEEEEEeecCCC--CCCcceEEEEEeehHHHHHHHHhcCCCe
Q 007417 149 KEHEIFIGGL--DRDAT--------QEDVRKVFERIGEVIEVRLHKNFST--NRNKGYAFVKFANKEHAKRALTEMKNPV 216 (604)
Q Consensus 149 ~~~~vfV~nL--p~~~t--------e~dL~~~F~~~G~V~~v~i~~d~~t--g~~kG~afV~F~~~e~A~~Al~~l~~~~ 216 (604)
+++.|.|.|+ |.++. +++|++.|++||+|.+|+|++++.+ ++++|+|||+|.+.++|.+|+..||+..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 6789999998 44443 4799999999999999999988765 4789999999999999999999999999
Q ss_pred eeCcccccCCC
Q 007417 217 ICGKRCGTAPS 227 (604)
Q Consensus 217 l~g~~i~v~~~ 227 (604)
+.||.|.+...
T Consensus 84 f~GR~i~v~~~ 94 (105)
T 3v4m_A 84 FANRVVVTKYC 94 (105)
T ss_dssp ETTEECEEEEE
T ss_pred eCCCEEEEEEe
Confidence 99999987654
No 363
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=3.2e-12 Score=104.07 Aligned_cols=67 Identities=16% Similarity=0.440 Sum_probs=56.5
Q ss_pred ccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCee--CCCccEEE
Q 007417 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF--SDGNSKVK 403 (604)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~--~g~~~~v~ 403 (604)
.++|||+|||+.+++++|+++|++||.|..|.|+.+ ++|||||+|.+.++|++ +++..+ .++.|.|.
T Consensus 5 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~----~~~~~~~~~g~~l~v~ 73 (88)
T 1wf0_A 5 SSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQS----LCGEDLIIKGISVHIS 73 (88)
T ss_dssp CCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHH----TTTCEEEETTEEEEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHH----HhcCCceeCCEEEEEE
Confidence 479999999999999999999999999999999865 68999999999999975 455555 55554444
No 364
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.23 E-value=2.5e-12 Score=108.03 Aligned_cols=72 Identities=25% Similarity=0.450 Sum_probs=60.8
Q ss_pred EcCCCCCCCHHHHHHHh------------hccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCccc
Q 007417 155 IGGLDRDATQEDVRKVF------------ERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRC 222 (604)
Q Consensus 155 V~nLp~~~te~dL~~~F------------~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i 222 (604)
+.|||+.+|+++|+++| ++||+|.+|+|++++. ++++|||||+|.+.++|.+|+..||+..+.|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 34555666666666555 9999999999998854 7899999999999999999999999999999999
Q ss_pred ccCCC
Q 007417 223 GTAPS 227 (604)
Q Consensus 223 ~v~~~ 227 (604)
.|..+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 87654
No 365
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=1.6e-11 Score=104.75 Aligned_cols=77 Identities=14% Similarity=0.289 Sum_probs=65.5
Q ss_pred cccccccCCCCccc-----------ChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCee
Q 007417 327 HVKTVFLDGVPPHW-----------KENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 395 (604)
Q Consensus 327 ~~~~l~v~nLp~~~-----------t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~ 395 (604)
.+++|+|+||.... ++++|+++|++||.|..|.| .++ .++|||||+|.+.++|.+|+..|||+.|
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 35789999994332 25899999999999999966 443 3799999999999999999999999999
Q ss_pred CCCccEEEEeee
Q 007417 396 SDGNSKVKLRAR 407 (604)
Q Consensus 396 ~g~~~~v~~~~~ 407 (604)
.|+.|.|.++..
T Consensus 90 ~gr~l~v~~a~~ 101 (112)
T 2dit_A 90 GGRQITAQAWDG 101 (112)
T ss_dssp TTEECEEEECCS
T ss_pred CCcEEEEEEeCC
Confidence 999999988643
No 366
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.22 E-value=1.3e-11 Score=105.75 Aligned_cols=79 Identities=13% Similarity=0.197 Sum_probs=69.8
Q ss_pred CCCEEEEcCCCC-----CCCHHHHHHHhhccCCeEEEEEeecCC----CCCCcceEEEEEeehHHHHHHHHhcCCCeeeC
Q 007417 149 KEHEIFIGGLDR-----DATQEDVRKVFERIGEVIEVRLHKNFS----TNRNKGYAFVKFANKEHAKRALTEMKNPVICG 219 (604)
Q Consensus 149 ~~~~vfV~nLp~-----~~te~dL~~~F~~~G~V~~v~i~~d~~----tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g 219 (604)
++++|+|+||-. +-.+++|++.|++||+|.+|+|++++. +++++|++||+|.+.++|.+|+..||+..+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 789999999942 224789999999999999999999865 45788999999999999999999999999999
Q ss_pred cccccCCC
Q 007417 220 KRCGTAPS 227 (604)
Q Consensus 220 ~~i~v~~~ 227 (604)
|.|.+...
T Consensus 99 R~i~v~~~ 106 (118)
T 3ue2_A 99 RKVVAEVY 106 (118)
T ss_dssp EECEEEEE
T ss_pred cEEEEEEc
Confidence 99987654
No 367
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=3e-10 Score=94.19 Aligned_cols=74 Identities=16% Similarity=0.209 Sum_probs=62.2
Q ss_pred CCCEEEEcCCC-------CCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcc
Q 007417 149 KEHEIFIGGLD-------RDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKR 221 (604)
Q Consensus 149 ~~~~vfV~nLp-------~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~ 221 (604)
...+|.|.-.. ..+|+++|+++|++||.|..|+|+ ++++|||||+|.+.++|.+|+..+++ +.++.
T Consensus 9 ~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~ 81 (100)
T 2d9o_A 9 GTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNP 81 (100)
T ss_dssp SSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSB
T ss_pred ccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCe
Confidence 35677777665 458999999999999999999997 47899999999999999999998544 67888
Q ss_pred cccCCCCC
Q 007417 222 CGTAPSED 229 (604)
Q Consensus 222 i~v~~~~~ 229 (604)
|.|.++..
T Consensus 82 l~V~~a~~ 89 (100)
T 2d9o_A 82 LKISWLEG 89 (100)
T ss_dssp CEEECSSC
T ss_pred EEEEEccC
Confidence 88877654
No 368
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=1.9e-10 Score=95.39 Aligned_cols=62 Identities=19% Similarity=0.360 Sum_probs=54.7
Q ss_pred CcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEe
Q 007417 337 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (604)
Q Consensus 337 p~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~ 405 (604)
+..+++++|+++|++||.|..|.|+ ++++|||||+|.+.++|..||..++ .+.++.|+|.++
T Consensus 26 ~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l~V~~a 87 (100)
T 2d9o_A 26 KGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEV--GLVDNPLKISWL 87 (100)
T ss_dssp CCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBCEEECS
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeEEEEEc
Confidence 3578999999999999999999998 3679999999999999999998754 478999988875
No 369
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.04 E-value=2.5e-10 Score=115.80 Aligned_cols=66 Identities=20% Similarity=0.386 Sum_probs=59.6
Q ss_pred cCCCCEEEEcC--CCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeee
Q 007417 147 IKKEHEIFIGG--LDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVIC 218 (604)
Q Consensus 147 ~~~~~~vfV~n--Lp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~ 218 (604)
..++++|||+| |++.+|+++|+++|++||+|.+|++.. +||||||+|.+.++|++|++.||+..+.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVV 82 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccc
Confidence 34789999999 689999999999999999999988753 5799999999999999999999999874
No 370
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.00 E-value=3.4e-10 Score=96.23 Aligned_cols=60 Identities=18% Similarity=0.322 Sum_probs=55.4
Q ss_pred hhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEe
Q 007417 342 ENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (604)
Q Consensus 342 ~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~ 405 (604)
+++|++.|++||.|..|.|.++. ++||+||+|.+.++|.+|+..|||+.|.||.|.|.+.
T Consensus 31 ~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~ 90 (114)
T 3s6e_A 31 KDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYV 90 (114)
T ss_dssp HHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred HHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEE
Confidence 46899999999999999997653 5899999999999999999999999999999999985
No 371
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.97 E-value=4.9e-10 Score=113.67 Aligned_cols=72 Identities=17% Similarity=0.256 Sum_probs=61.5
Q ss_pred cccccccCC--CCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeC---CC--c
Q 007417 327 HVKTVFLDG--VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS---DG--N 399 (604)
Q Consensus 327 ~~~~l~v~n--Lp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~---g~--~ 399 (604)
.+++|||+| |++.+|+++|+++|++||.|..|.+.. +||||||+|.+.++|++|++.|||+.+. |+ .
T Consensus 17 ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ 90 (345)
T 3tht_A 17 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90 (345)
T ss_dssp CCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceE
Confidence 457999999 578999999999999999999987753 4799999999999999999999999883 45 3
Q ss_pred cEEEE
Q 007417 400 SKVKL 404 (604)
Q Consensus 400 ~~v~~ 404 (604)
+.|.+
T Consensus 91 ly~~~ 95 (345)
T 3tht_A 91 LYLNF 95 (345)
T ss_dssp CEEEE
T ss_pred EEEEE
Confidence 44444
No 372
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.93 E-value=1.4e-09 Score=92.43 Aligned_cols=75 Identities=20% Similarity=0.256 Sum_probs=64.0
Q ss_pred CCCEEEEcCCCCCC----------CHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeee
Q 007417 149 KEHEIFIGGLDRDA----------TQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVIC 218 (604)
Q Consensus 149 ~~~~vfV~nLp~~~----------te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~ 218 (604)
++++|.|.|+=... .+++|++.|++||.|.+|.|+++ .++|+|||+|.+.++|.+|+..||+..+.
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~----~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKN----SAQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTT----CTTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecC----CCcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 57889999984322 34588999999999999999765 25999999999999999999999999999
Q ss_pred CcccccCCC
Q 007417 219 GKRCGTAPS 227 (604)
Q Consensus 219 g~~i~v~~~ 227 (604)
||.|.+...
T Consensus 82 GR~i~v~~~ 90 (114)
T 3s6e_A 82 GKMITAAYV 90 (114)
T ss_dssp TEECEEEEE
T ss_pred CEEEEEEEE
Confidence 999987654
No 373
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.82 E-value=4.4e-09 Score=89.43 Aligned_cols=72 Identities=14% Similarity=0.121 Sum_probs=64.0
Q ss_pred cccccccCCCCcc-cChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCC-HHHHHHHHHHhc--CCeeCCCccEE
Q 007417 327 HVKTVFLDGVPPH-WKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFST-HEAAVACINAIN--NKEFSDGNSKV 402 (604)
Q Consensus 327 ~~~~l~v~nLp~~-~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~-~~~A~~A~~~ln--g~~~~g~~~~v 402 (604)
....|+|+||++. ++.++|+++|++||.|.+|.++++.. +|||+|.+ +.+|..|+.+|| +..|.+..+++
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ 90 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTW 90 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEE
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEE
Confidence 4578999999999 99999999999999999999988754 59999999 899999999995 77888877777
Q ss_pred EE
Q 007417 403 KL 404 (604)
Q Consensus 403 ~~ 404 (604)
++
T Consensus 91 ev 92 (121)
T 1owx_A 91 EV 92 (121)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.80 E-value=5.1e-09 Score=89.06 Aligned_cols=71 Identities=17% Similarity=0.180 Sum_probs=60.8
Q ss_pred cCCCCEEEEcCCCCC-CCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEee-hHHHHHHHHhcC--CCeeeCccc
Q 007417 147 IKKEHEIFIGGLDRD-ATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFAN-KEHAKRALTEMK--NPVICGKRC 222 (604)
Q Consensus 147 ~~~~~~vfV~nLp~~-~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~-~e~A~~Al~~l~--~~~l~g~~i 222 (604)
....+.|+|+||+++ ++.++|+++|++||+|.+|.++++.. +|||.|.+ ..+|..|+..|+ +..|.+..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 446899999999999 99999999999999999999988744 59999999 799999999984 455666544
Q ss_pred c
Q 007417 223 G 223 (604)
Q Consensus 223 ~ 223 (604)
.
T Consensus 89 ~ 89 (121)
T 1owx_A 89 T 89 (121)
T ss_dssp E
T ss_pred E
Confidence 3
No 375
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.68 E-value=2.2e-08 Score=79.61 Aligned_cols=72 Identities=15% Similarity=0.256 Sum_probs=60.9
Q ss_pred CCCEEEEcCCCC----CCCH----HHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCc
Q 007417 149 KEHEIFIGGLDR----DATQ----EDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGK 220 (604)
Q Consensus 149 ~~~~vfV~nLp~----~~te----~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~ 220 (604)
+..||+|.-++. ..-+ .+|.+.|++||+|..|+|+.++ +||+|.+.++|.+|++ |++..+.||
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCe
Confidence 457888888762 3333 6789999999999999998873 9999999999999998 999999999
Q ss_pred ccccCCCCC
Q 007417 221 RCGTAPSED 229 (604)
Q Consensus 221 ~i~v~~~~~ 229 (604)
.|+|..+.+
T Consensus 77 ~LkV~lkt~ 85 (91)
T 2dnr_A 77 TITIALKSP 85 (91)
T ss_dssp EEEEEECCC
T ss_pred EEEEEeCCC
Confidence 999876654
No 376
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.63 E-value=2.5e-08 Score=79.34 Aligned_cols=55 Identities=20% Similarity=0.448 Sum_probs=50.9
Q ss_pred hhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEee
Q 007417 343 NQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (604)
Q Consensus 343 ~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~~ 406 (604)
.+|.+.|++||.|..++|+.++ +||+|.+.++|.+||. |||..+.||.|+|.++.
T Consensus 30 ~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt 84 (91)
T 2dnr_A 30 DELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNRTITIALKS 84 (91)
T ss_dssp HHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTEEEEEEECC
T ss_pred HHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCC
Confidence 6789999999999999999873 8999999999999998 99999999999999874
No 377
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.62 E-value=6.7e-08 Score=92.87 Aligned_cols=66 Identities=18% Similarity=0.281 Sum_probs=59.6
Q ss_pred cChhhHHhhhcccCCEEEEEEeecCC----CCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEEEEe
Q 007417 340 WKENQIRDQIKGYGDVIRIVLARNMS----TAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (604)
Q Consensus 340 ~t~~~l~~~F~~~G~v~~v~i~~d~~----~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v~~~ 405 (604)
-.+++|++.|++||.|..+.|+++.. +++++|++||+|.+.++|.+|+..|||+.|.||.|.+.+.
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~ 210 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVY 210 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEc
Confidence 35689999999999999999986543 4589999999999999999999999999999999999874
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.47 E-value=1.1e-07 Score=75.82 Aligned_cols=71 Identities=13% Similarity=0.233 Sum_probs=60.6
Q ss_pred CCCCEEEEcCCCCC-----CCH----HHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeee
Q 007417 148 KKEHEIFIGGLDRD-----ATQ----EDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVIC 218 (604)
Q Consensus 148 ~~~~~vfV~nLp~~-----~te----~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~ 218 (604)
.+..||+|.-++.. .-+ .+|.+.|.+||+|..|+|+.++ +||+|.+.++|.+||+ |++..+.
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeC
Confidence 35679999988743 222 5688999999999999999874 9999999999999998 9999999
Q ss_pred CcccccCCC
Q 007417 219 GKRCGTAPS 227 (604)
Q Consensus 219 g~~i~v~~~ 227 (604)
||.|+|...
T Consensus 84 Gr~L~V~~k 92 (95)
T 1ufw_A 84 GRAVKISGP 92 (95)
T ss_dssp TEEEEEECC
T ss_pred CeEEEEecc
Confidence 999988654
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.43 E-value=7e-08 Score=77.06 Aligned_cols=68 Identities=12% Similarity=0.288 Sum_probs=56.9
Q ss_pred cccccCCCCcc-----cCh----hhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCc
Q 007417 329 KTVFLDGVPPH-----WKE----NQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGN 399 (604)
Q Consensus 329 ~~l~v~nLp~~-----~t~----~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~ 399 (604)
-+|+|.-++.. +.. .+|.+.|.+||.|..++|+.++ +||+|.+.++|.+||+ |||..+.||.
T Consensus 16 ~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~Gr~ 86 (95)
T 1ufw_A 16 ATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVKGRA 86 (95)
T ss_dssp CEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEETTEE
T ss_pred CeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeCCeE
Confidence 46677666532 222 5689999999999999999873 9999999999999998 9999999999
Q ss_pred cEEEEe
Q 007417 400 SKVKLR 405 (604)
Q Consensus 400 ~~v~~~ 405 (604)
|+|.+.
T Consensus 87 L~V~~k 92 (95)
T 1ufw_A 87 VKISGP 92 (95)
T ss_dssp EEEECC
T ss_pred EEEecc
Confidence 999865
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.42 E-value=2.6e-07 Score=88.73 Aligned_cols=81 Identities=12% Similarity=0.197 Sum_probs=66.9
Q ss_pred CCCCEEEEcCCCC-----CCCHHHHHHHhhccCCeEEEEEeecCC----CCCCcceEEEEEeehHHHHHHHHhcCCCeee
Q 007417 148 KKEHEIFIGGLDR-----DATQEDVRKVFERIGEVIEVRLHKNFS----TNRNKGYAFVKFANKEHAKRALTEMKNPVIC 218 (604)
Q Consensus 148 ~~~~~vfV~nLp~-----~~te~dL~~~F~~~G~V~~v~i~~d~~----tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~ 218 (604)
.....+.+.|+-. +-.+++|++.|++||.|.+|.|+++.. +++++|++||+|.+.++|.+|+..|++..+.
T Consensus 122 ~~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~ 201 (222)
T 3dxb_A 122 MESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 201 (222)
T ss_dssp CBCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred cccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceEC
Confidence 3455666666633 346789999999999999999986543 4589999999999999999999999999999
Q ss_pred CcccccCCCC
Q 007417 219 GKRCGTAPSE 228 (604)
Q Consensus 219 g~~i~v~~~~ 228 (604)
||.|.+....
T Consensus 202 gr~i~~~~~~ 211 (222)
T 3dxb_A 202 GRKVVAEVYD 211 (222)
T ss_dssp SSBCEEEECC
T ss_pred CeEEEEEEcC
Confidence 9999876543
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.15 E-value=2e-06 Score=69.96 Aligned_cols=70 Identities=14% Similarity=0.168 Sum_probs=64.7
Q ss_pred ccccccCCCCcccChhhHHhhhccc-----CCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEE
Q 007417 328 VKTVFLDGVPPHWKENQIRDQIKGY-----GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 402 (604)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~F~~~-----G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v 402 (604)
.++|-|-|||..+++..|+.+..++ |.|+.+.+..|. +-|+|+|.+...|.+|..+|+|.+|.|+.|+|
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~ 94 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRS 94 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEEe
Confidence 3688999999999999999999999 999999998884 46999999999999999999999999999888
Q ss_pred E
Q 007417 403 K 403 (604)
Q Consensus 403 ~ 403 (604)
.
T Consensus 95 g 95 (117)
T 2l9w_A 95 G 95 (117)
T ss_dssp E
T ss_pred c
Confidence 5
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.11 E-value=7.8e-06 Score=66.48 Aligned_cols=77 Identities=13% Similarity=0.145 Sum_probs=67.8
Q ss_pred hhhccCCCCEEEEcCCCCCCCHHHHHHHhhcc-----CCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCee
Q 007417 143 KDRKIKKEHEIFIGGLDRDATQEDVRKVFERI-----GEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVI 217 (604)
Q Consensus 143 ~~~~~~~~~~vfV~nLp~~~te~dL~~~F~~~-----G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l 217 (604)
........++|-|-|||-.+++..|+.+.+.+ |.|+.|.+..| -+=|+|+|.+...|-+|.-+|++..|
T Consensus 14 s~~~~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD------H~GAivef~d~~~AgKasLaL~G~ef 87 (117)
T 2l9w_A 14 SRNSKELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD------FNGAIIIFRDSKFAAKMLMILNGSQF 87 (117)
T ss_dssp CCCTTTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT------TTEEEEECSCHHHHHHHHHHHSSEEE
T ss_pred ccCCccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC------CCceEEEEccchhhHHHHhhcCCeee
Confidence 33344568999999999999999999999999 99999999877 34599999999999999999999999
Q ss_pred eCcccccC
Q 007417 218 CGKRCGTA 225 (604)
Q Consensus 218 ~g~~i~v~ 225 (604)
.|++|++.
T Consensus 88 ~gr~Lr~g 95 (117)
T 2l9w_A 88 QGKVIRSG 95 (117)
T ss_dssp TTEEEEEE
T ss_pred cCeEEEec
Confidence 99988743
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.89 E-value=8.3e-05 Score=60.07 Aligned_cols=86 Identities=16% Similarity=0.207 Sum_probs=71.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcc-----CCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCcccc
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFERI-----GEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCG 223 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~~-----G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~ 223 (604)
...+|.|.|||.++.++.|.-+|+.- |+|..|.... +.|+|+|.+.+.|++.|+. ....|.+..|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEE
Confidence 46899999999999999999999882 5899988853 5699999999999999985 35577788887
Q ss_pred cCC--CCCCCcceecccCCCCc
Q 007417 224 TAP--SEDNDTLFVGNICNTWT 243 (604)
Q Consensus 224 v~~--~~~~~~l~v~nlp~~~t 243 (604)
|.+ .....+|++.+|++.++
T Consensus 78 V~P~~~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 78 LRPAPPRAPARLLLQGLPPGTS 99 (104)
T ss_dssp EEECCCCCCCCCCCCSCCCCCC
T ss_pred EEcCCCCCcceEeeecCCCCCC
Confidence 755 45678999999998764
No 384
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.00 E-value=0.0031 Score=50.35 Aligned_cols=70 Identities=16% Similarity=0.159 Sum_probs=58.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCC--CcceEEEEEeehHHHHHHHHhcCCCeeeCc
Q 007417 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNR--NKGYAFVKFANKEHAKRALTEMKNPVICGK 220 (604)
Q Consensus 151 ~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~--~kG~afV~F~~~e~A~~Al~~l~~~~l~g~ 220 (604)
.+|.||+||+.+|++++.+.+.....+.....+..+.+.. .-.-|||.|.+.+++....+.+++..+...
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~ 73 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN 73 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence 5799999999999999999999998888777776654322 345699999999999999999999877644
No 385
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.76 E-value=0.0093 Score=48.16 Aligned_cols=90 Identities=14% Similarity=0.126 Sum_probs=65.6
Q ss_pred CCCcceecccCCCCcHHHHHHHHHh---cCCcceeEEEEeccccCCCCcccEEEEEecCHHHHHHHHHHhCCCCeecCCC
Q 007417 229 DNDTLFVGNICNTWTKEAIKQKLKD---YGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 305 (604)
Q Consensus 229 ~~~~l~v~nlp~~~te~~l~~~f~~---~G~~~v~~i~i~~~~~~~g~skG~afV~f~~~e~A~~Al~~l~~~~~~~g~~ 305 (604)
...+|.|.|||..+.++.|.-+|+. .|-..|..+.... +-|+|+|.+...|+.++++ ..+.+ .
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---------~~AvItF~d~~va~rVL~k--~~H~L---~ 72 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG---------CGGVLTFREPADAERVLAQ--ADHEL---H 72 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET---------TEEEEEESSHHHHHHHHTC--SCCBS---S
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC---------CcEEEEEcChHHHHHHhcC--Cccee---c
Confidence 3578999999999999999999987 3433488887753 3689999999999999864 12222 2
Q ss_pred CcceeecccCCCCCCChhhhccccccccCCCCcccC
Q 007417 306 ERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWK 341 (604)
Q Consensus 306 ~r~l~v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t 341 (604)
+..+.|....+. ...+|++.+|++.++
T Consensus 73 ~~~LsV~P~~~~---------~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 73 GAQLSLRPAPPR---------APARLLLQGLPPGTS 99 (104)
T ss_dssp SSBCEEEECCCC---------CCCCCCCCSCCCCCC
T ss_pred CeEEEEEcCCCC---------CcceEeeecCCCCCC
Confidence 355666443332 236899999999875
No 386
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.73 E-value=0.0022 Score=52.07 Aligned_cols=72 Identities=13% Similarity=0.122 Sum_probs=59.8
Q ss_pred CCEEEEcCCCCCC-C----HHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeCccccc
Q 007417 150 EHEIFIGGLDRDA-T----QEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (604)
Q Consensus 150 ~~~vfV~nLp~~~-t----e~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~~i~v 224 (604)
.++|+|.||+.++ + .+.++.+|.+|+++......+. -.-..|.|.+.++|.+|...|++..+.|+.|++
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 5789999998865 2 2578899999999888777643 345899999999999999999999999999876
Q ss_pred CCC
Q 007417 225 APS 227 (604)
Q Consensus 225 ~~~ 227 (604)
-.+
T Consensus 79 YFg 81 (104)
T 1wey_A 79 YFA 81 (104)
T ss_dssp ECC
T ss_pred Eec
Confidence 444
No 387
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.66 E-value=0.0013 Score=53.46 Aligned_cols=73 Identities=12% Similarity=0.104 Sum_probs=60.5
Q ss_pred ccccccCCCCccc-Ch----hhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCCccEE
Q 007417 328 VKTVFLDGVPPHW-KE----NQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 402 (604)
Q Consensus 328 ~~~l~v~nLp~~~-t~----~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~~~~v 402 (604)
.++|+|.||+..+ .. +.++++|.+|+.+.....++.- .-..|.|.++++|.+|...|++..|.|+.++|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 3689999998866 33 4668899999988777776553 14689999999999999999999999999999
Q ss_pred EEee
Q 007417 403 KLRA 406 (604)
Q Consensus 403 ~~~~ 406 (604)
.++.
T Consensus 79 YFgq 82 (104)
T 1wey_A 79 YFAQ 82 (104)
T ss_dssp ECCC
T ss_pred EecC
Confidence 8875
No 388
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.58 E-value=0.005 Score=49.10 Aligned_cols=71 Identities=14% Similarity=0.271 Sum_probs=59.4
Q ss_pred cccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCC--cceEEEEEeCCHHHHHHHHHHhcCCeeCCCc
Q 007417 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAK--RKDYGFIDFSTHEAAVACINAINNKEFSDGN 399 (604)
Q Consensus 329 ~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~--~~G~afV~F~~~~~A~~A~~~lng~~~~g~~ 399 (604)
++|.|++||+.+|++++.+.+.....+.+...+..+.+.+ .-..|+|.|.+.+++..-.+.++|+.|.+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~k 74 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNK 74 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCC
Confidence 4789999999999999999999998888877766554332 3456999999999999999999999887653
No 389
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.56 E-value=0.0035 Score=49.94 Aligned_cols=57 Identities=18% Similarity=0.399 Sum_probs=47.4
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhc
Q 007417 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212 (604)
Q Consensus 147 ~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l 212 (604)
....+.++| ++|..+.-.||.++|+.||.| .|+.+-|. .|||.|.+++.|..|+..+
T Consensus 13 p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 13 PKRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CCCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 334567777 999999999999999999965 46666552 5999999999999999976
No 390
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.96 E-value=0.014 Score=46.64 Aligned_cols=54 Identities=20% Similarity=0.414 Sum_probs=45.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcC
Q 007417 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMK 213 (604)
Q Consensus 151 ~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~ 213 (604)
..++| ++|..+.-.||.++|+.||.| .|+.+-|. .|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 45556 999999999999999999944 56666552 59999999999999999764
No 391
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.84 E-value=0.0084 Score=47.96 Aligned_cols=63 Identities=16% Similarity=0.383 Sum_probs=49.1
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhc-CCeeCCC
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN-NKEFSDG 398 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~ln-g~~~~g~ 398 (604)
....++| ++|..+...||.++|+.||. ..|..+.|. -|||.|.+++.|..|+..++ ...+..+
T Consensus 5 R~HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~i~~~~~y~i~ 68 (101)
T 3ctr_A 5 SDHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVKIAVNTSKYAESYRIQ 68 (101)
T ss_dssp EEEEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT-------EEEEEEEEECHHHHHHHHHTTCSSCCCC
T ss_pred CCeEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHhcccCCceEEE
Confidence 3467778 99999999999999999983 346666552 59999999999999998775 3334433
No 392
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.70 E-value=0.0094 Score=47.51 Aligned_cols=55 Identities=16% Similarity=0.428 Sum_probs=45.1
Q ss_pred ccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhc
Q 007417 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 391 (604)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~ln 391 (604)
.+.++| ++|..+...||.++|+.||.| .|..+.|. -|||.|.+++.|..|+..++
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 356777 999999999999999999844 35555552 59999999999999998764
No 393
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.65 E-value=0.014 Score=46.78 Aligned_cols=72 Identities=11% Similarity=0.098 Sum_probs=52.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCC--CCcceEEEEEeehHHHHHHHHhcCCCeeeCc
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTN--RNKGYAFVKFANKEHAKRALTEMKNPVICGK 220 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg--~~kG~afV~F~~~e~A~~Al~~l~~~~l~g~ 220 (604)
.+-+|.||.||+.+|++++.+.+...=++.....+..+.+- ..-.-|||.|.+.++.....+.+++..+...
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~ 81 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDS 81 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECT
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeC
Confidence 45689999999999999887777665454443333333221 1234599999999999999999998776554
No 394
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.44 E-value=0.041 Score=45.93 Aligned_cols=63 Identities=11% Similarity=0.308 Sum_probs=52.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcCCCeeeC
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICG 219 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~g 219 (604)
..+-|.|-+.|... -..|-.+|++||+|.+.... ....+-.|.|.+..+|++||.. |+..|.+
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~k-NG~ii~g 85 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALSK-DGRIFGE 85 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHTT-TTCEETT
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHHh-CCeEecC
Confidence 46889999999986 44688899999999988762 3467999999999999999984 8888865
No 395
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.25 E-value=0.041 Score=45.88 Aligned_cols=64 Identities=17% Similarity=0.299 Sum_probs=51.6
Q ss_pred cccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhcCCeeCCC
Q 007417 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG 398 (604)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~lng~~~~g~ 398 (604)
..+.|.|-++|... ...|-.+|++||.|.+..... ...+-.|.|.+..+|++||. .||..|.+.
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~ 86 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALS-KDGRIFGES 86 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHT-TTTCEETTT
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHH-hCCeEecCC
Confidence 35678889999886 556778899999999887621 24589999999999999997 699998754
No 396
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.23 E-value=0.017 Score=46.32 Aligned_cols=72 Identities=13% Similarity=0.189 Sum_probs=54.4
Q ss_pred ccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCC--cceEEEEEeCCHHHHHHHHHHhcCCeeCCCc
Q 007417 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAK--RKDYGFIDFSTHEAAVACINAINNKEFSDGN 399 (604)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~--~~G~afV~F~~~~~A~~A~~~lng~~~~g~~ 399 (604)
+-+|.|+.||+.+|++++.+.+...-.+.+...+....+.+ .-..|+|.|.+.+++..-.+.++|..|-+.+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~k 82 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSK 82 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTT
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCC
Confidence 35799999999999999999888876655544433322221 1235899999999999999999999886653
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.07 E-value=0.0055 Score=64.14 Aligned_cols=62 Identities=18% Similarity=0.300 Sum_probs=46.9
Q ss_pred hhccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHh
Q 007417 144 DRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211 (604)
Q Consensus 144 ~~~~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~ 211 (604)
.++....++|||. .|..+++.+|.++|++||+|.++.+..++ .-||.|+|.+.+++.+++..
T Consensus 47 ~r~~qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 47 ERREQAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHHHHHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSS
T ss_pred HHHHHhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhc
Confidence 3444467999998 79999999999999999999999887543 36999999999999988764
No 398
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=92.23 E-value=0.058 Score=45.65 Aligned_cols=76 Identities=20% Similarity=0.336 Sum_probs=51.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEE-EEEeec--------CCCC-----CCcceEEEEEeehHHHHHHHHhcCC
Q 007417 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIE-VRLHKN--------FSTN-----RNKGYAFVKFANKEHAKRALTEMKN 214 (604)
Q Consensus 149 ~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~-v~i~~d--------~~tg-----~~kG~afV~F~~~e~A~~Al~~l~~ 214 (604)
.+..|.|=+.|...+. .|-++|++||.|.+ +.+.+. +.+. .......|+|.++.+|.+||. .|+
T Consensus 6 ~e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp --CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred CceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 4567888888877666 57789999999865 211110 0000 135678999999999999998 489
Q ss_pred CeeeCcccccCC
Q 007417 215 PVICGKRCGTAP 226 (604)
Q Consensus 215 ~~l~g~~i~v~~ 226 (604)
..|.|..|-|.+
T Consensus 84 ~ii~G~mIGV~P 95 (132)
T 3p3d_A 84 AVFNGVLLGVIP 95 (132)
T ss_dssp CEETTEECEEEE
T ss_pred eEeCcEEEEEEE
Confidence 999887554443
No 399
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=91.75 E-value=0.086 Score=44.61 Aligned_cols=74 Identities=14% Similarity=0.203 Sum_probs=51.2
Q ss_pred cccccCCCCcccChhhHHhhhcccCCEEEEE-EeecC--------CCC-----CcceEEEEEeCCHHHHHHHHHHhcCCe
Q 007417 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIV-LARNM--------STA-----KRKDYGFIDFSTHEAAVACINAINNKE 394 (604)
Q Consensus 329 ~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~-i~~d~--------~~g-----~~~G~afV~F~~~~~A~~A~~~lng~~ 394 (604)
..|.|-+.|...++. +-+.|++||.|.+-. +.+.. ... ....+..|+|.++.+|.+||. .||+.
T Consensus 8 ~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMANQ-VIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGGHHH-HHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHHHHH-HHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 467777888777665 447899999886521 11100 000 124578999999999999997 69999
Q ss_pred eCCCccEEEE
Q 007417 395 FSDGNSKVKL 404 (604)
Q Consensus 395 ~~g~~~~v~~ 404 (604)
|.|..|-|..
T Consensus 86 i~G~mIGV~P 95 (132)
T 3p3d_A 86 FNGVLLGVIP 95 (132)
T ss_dssp ETTEECEEEE
T ss_pred eCcEEEEEEE
Confidence 9997666654
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=88.55 E-value=0.15 Score=53.26 Aligned_cols=55 Identities=18% Similarity=0.352 Sum_probs=40.9
Q ss_pred ccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 007417 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN 388 (604)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~ 388 (604)
.+.|+|. .|..+++.+|.++|++||.|..+.+-.+. .-|+.|+|.+.+++.+++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 4678887 78999999999999999999998876542 3699999999999987754
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=70.66 E-value=5.1 Score=42.52 Aligned_cols=55 Identities=18% Similarity=0.419 Sum_probs=45.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhcC
Q 007417 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMK 213 (604)
Q Consensus 150 ~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~ 213 (604)
...++|+ +|..+...+|.+.|+.||.| +|+.+-+ ..|||.|.+.+.|..++..++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 4567776 88999999999999999964 5665433 359999999999999999875
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=64.41 E-value=7.8 Score=41.12 Aligned_cols=55 Identities=16% Similarity=0.438 Sum_probs=44.2
Q ss_pred ccccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhc
Q 007417 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 391 (604)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~ln 391 (604)
...++|+ +|..+...+|.+.|+.||.| .|..+.+ ..|||.|.+.+.|..++..++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 3566676 88888999999999999954 4555443 259999999999999999885
No 403
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=46.01 E-value=8 Score=24.95 Aligned_cols=16 Identities=19% Similarity=0.438 Sum_probs=13.0
Q ss_pred chhhhhhHHhhhhhcc
Q 007417 578 MASYLSNFLLSLIYVS 593 (604)
Q Consensus 578 ~~~~~~~~~~~~~~~~ 593 (604)
|-|-|.|||+||+.=.
T Consensus 2 mTpSL~nFl~Sl~aG~ 17 (39)
T 3arc_X 2 ITPSLKGFFIGLLSGA 17 (39)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred cChhHHHHHHHHHHHH
Confidence 6788999999997643
No 404
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=42.61 E-value=5.2 Score=40.39 Aligned_cols=10 Identities=0% Similarity=-0.097 Sum_probs=4.7
Q ss_pred cChhhHHhhh
Q 007417 340 WKENQIRDQI 349 (604)
Q Consensus 340 ~t~~~l~~~F 349 (604)
+++++|++..
T Consensus 229 vt~~~l~~i~ 238 (358)
T 2pk2_A 229 VTLELLDELT 238 (358)
T ss_dssp CCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 3455554443
No 405
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=32.04 E-value=1.7e+02 Score=22.39 Aligned_cols=58 Identities=19% Similarity=0.306 Sum_probs=48.3
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCCCCCCcceEEEEEeehHHHHHHHHhc
Q 007417 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212 (604)
Q Consensus 147 ~~~~~~vfV~nLp~~~te~dL~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l 212 (604)
.+.++-|-|-|+|..+-..++.-.....|--..|..+ .|.|.|.|.+.++-..|+..|
T Consensus 9 ikqnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 9 IKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp -CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHH
T ss_pred hhhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHH
Confidence 4567899999999999999988888888876677664 457999999999999999875
No 406
>3bz1_X Photosystem II PSBX protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_X* 3bz2_X*
Probab=27.49 E-value=23 Score=24.07 Aligned_cols=18 Identities=17% Similarity=0.355 Sum_probs=13.7
Q ss_pred ccchhhhhhHHhhhhhcc
Q 007417 576 HVMASYLSNFLLSLIYVS 593 (604)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~ 593 (604)
-.|-|-|.|||+||+.-.
T Consensus 10 ~~mTpSL~NFl~SlvaG~ 27 (50)
T 3bz1_X 10 LTITPSLKGFFIGLLSGA 27 (50)
T ss_dssp -CCCHHHHHHHHHHHHHH
T ss_pred hhcCHHHHHHHHHHHHHH
Confidence 357789999999987643
No 407
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=21.99 E-value=1.8e+02 Score=22.31 Aligned_cols=55 Identities=9% Similarity=0.093 Sum_probs=42.1
Q ss_pred cccccCCCCcccChhhHHhhhcccCCEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhc
Q 007417 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 391 (604)
Q Consensus 329 ~~l~v~nLp~~~t~~~l~~~F~~~G~v~~v~i~~d~~~g~~~G~afV~F~~~~~A~~A~~~ln 391 (604)
+-|.|-|+|..+-..++.-.....|---.|..+ .|-|.|.|.+.++..-|+.+|-
T Consensus 13 clikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkll 67 (129)
T 4eyt_A 13 CLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLL 67 (129)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHE
T ss_pred cEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHH
Confidence 456678899888777776666667765666654 3569999999999999998873
Done!