Query 007418
Match_columns 604
No_of_seqs 219 out of 1194
Neff 4.2
Searched_HMMs 46136
Date Thu Mar 28 23:19:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007418.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007418hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03547 Mem_trans: Membrane t 100.0 5E-30 1.1E-34 265.8 20.1 190 9-201 1-194 (385)
2 COG0679 Predicted permeases [G 99.8 5.8E-19 1.2E-23 182.2 11.9 188 7-201 2-200 (311)
3 PRK09903 putative transporter 99.7 7.7E-18 1.7E-22 173.2 11.1 184 9-201 4-205 (314)
4 TIGR00946 2a69 he Auxin Efflux 99.7 2.9E-18 6.2E-23 176.2 7.9 143 9-154 5-156 (321)
5 KOG2722 Predicted membrane pro 98.1 8.2E-06 1.8E-10 87.4 8.3 136 13-149 16-168 (408)
6 TIGR00946 2a69 he Auxin Efflux 97.4 0.00011 2.3E-09 76.3 3.3 60 500-563 171-230 (321)
7 PRK09903 putative transporter 96.8 0.00036 7.8E-09 72.6 0.7 59 504-566 166-224 (314)
8 COG0679 Predicted permeases [G 96.2 0.0026 5.7E-08 66.5 2.2 60 501-564 158-217 (311)
9 TIGR00841 bass bile acid trans 95.0 0.48 1E-05 49.3 13.8 138 7-150 133-274 (286)
10 PF13593 DUF4137: SBF-like CPA 91.8 12 0.00026 39.7 17.7 113 13-128 163-283 (313)
11 PF05684 DUF819: Protein of un 87.2 3.7 8E-05 45.0 9.9 74 10-84 21-97 (378)
12 COG0798 ACR3 Arsenite efflux p 79.7 53 0.0012 36.0 14.6 125 3-131 173-308 (342)
13 TIGR00832 acr3 arsenical-resis 79.0 18 0.00038 38.8 10.8 64 81-149 258-322 (328)
14 COG0385 Predicted Na+-dependen 76.2 89 0.0019 34.0 15.0 127 11-144 164-297 (319)
15 COG5505 Predicted integral mem 65.8 86 0.0019 34.4 11.9 134 14-154 31-174 (384)
16 TIGR00783 ccs citrate carrier 47.4 83 0.0018 34.6 8.4 82 17-99 207-296 (347)
17 TIGR00383 corA magnesium Mg(2+ 40.5 2.9E+02 0.0063 28.7 11.0 24 44-67 262-285 (318)
18 COG0598 CorA Mg2+ and Co2+ tra 39.5 2E+02 0.0043 30.6 9.7 66 6-77 234-302 (322)
19 PRK04972 putative transporter; 37.1 5.6E+02 0.012 29.8 13.4 26 7-33 5-32 (558)
20 PRK05771 V-type ATP synthase s 34.3 4.9E+02 0.011 30.5 12.6 39 22-61 373-411 (646)
21 PF07074 TRAP-gamma: Transloco 29.8 2.7E+02 0.0058 28.0 8.1 25 41-66 22-46 (170)
22 PRK09546 zntB zinc transporter 29.3 1.4E+02 0.003 31.6 6.5 26 42-67 266-291 (324)
23 PLN03159 cation/H(+) antiporte 29.0 1.5E+02 0.0033 36.0 7.5 32 36-67 313-344 (832)
24 PF14003 YlbE: YlbE-like prote 27.7 25 0.00054 30.1 0.5 15 505-519 14-29 (65)
25 PF13593 DUF4137: SBF-like CPA 26.7 4.6E+02 0.01 28.0 9.9 109 45-153 31-147 (313)
26 COG2991 Uncharacterized protei 26.2 63 0.0014 28.4 2.7 36 7-45 4-39 (77)
27 PRK10835 hypothetical protein; 25.6 5.8E+02 0.013 27.8 10.6 21 16-37 198-218 (373)
28 PF03956 DUF340: Membrane prot 25.4 3.2E+02 0.0069 27.5 7.9 127 19-154 3-137 (191)
29 TIGR00807 malonate_madL malona 24.9 4.5E+02 0.0098 25.2 8.2 51 15-67 38-88 (125)
30 TIGR00840 b_cpa1 sodium/hydrog 24.8 3.2E+02 0.0069 31.8 8.8 31 43-73 65-97 (559)
31 PF03390 2HCT: 2-hydroxycarbox 23.7 3.5E+02 0.0076 30.6 8.6 85 15-99 271-363 (414)
32 PF11457 DUF3021: Protein of u 23.4 5.3E+02 0.012 23.5 8.5 28 33-60 63-90 (136)
33 PRK11085 magnesium/nickel/coba 23.1 2.3E+02 0.0049 30.6 6.8 33 44-76 260-295 (316)
34 PF05297 Herpes_LMP1: Herpesvi 23.1 28 0.0006 37.6 0.0 21 42-62 80-100 (381)
35 COG2456 Uncharacterized conser 22.8 2.8E+02 0.0061 26.3 6.4 48 1-49 1-48 (121)
36 PF02932 Neur_chan_memb: Neuro 22.5 3.1E+02 0.0066 24.7 6.7 42 14-59 2-43 (237)
37 COG4393 Predicted membrane pro 22.2 1.4E+02 0.0031 33.1 5.0 46 7-62 5-50 (405)
38 PF09323 DUF1980: Domain of un 21.2 4.1E+02 0.0089 26.0 7.7 38 44-81 3-41 (182)
39 PF01544 CorA: CorA-like Mg2+ 20.8 78 0.0017 31.7 2.7 28 39-67 234-261 (292)
40 PF04235 DUF418: Protein of un 20.8 7.1E+02 0.015 23.4 9.7 60 42-101 95-155 (163)
41 PF05982 DUF897: Domain of unk 20.4 8.2E+02 0.018 27.0 10.3 40 16-57 1-40 (327)
No 1
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.97 E-value=5e-30 Score=265.81 Aligned_cols=190 Identities=31% Similarity=0.482 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcCChhhhhHHHHHHHHHHHHHHHHHHhhcCCcC-cc-hHHHHHHHH-HHHHHHHHH
Q 007418 9 LVLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTNDPY-AM-NFRFIAADT-LQKIIMLFV 85 (604)
Q Consensus 9 ~VLsAVLPLFlLIaLGYls~R~~gIft~e~~s~LNrFVf~VALPaLLF~~Ia~~d~~-~l-n~~fI~a~a-L~~lIv~lI 85 (604)
+++++++|+|+++++||+++|+ |++++++.+.++++|+++++|||+|..+++.... .+ ++.++.... +..++.+++
T Consensus 1 ~v~~~i~~i~~ii~~G~~~~~~-~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (385)
T PF03547_consen 1 TVFSAILPIFLIILLGYLLGRF-GILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLSLWFIPVFAFIIFILGLLL 79 (385)
T ss_pred CcHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999997 9999999999999999999999999999987533 33 444443332 222222223
Q ss_pred HHHHHHHhhCCCcccceeeeeE-EeecchhhhHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhh
Q 007418 86 LGIWTNFTKNGSLEWMITIFSL-STLPNTLVMGIPLLIAMYGEYSGSLMVQVVVLQCIIWYTLLLFLFEYRGAKMLIMEQ 164 (604)
Q Consensus 86 L~l~~rf~k~~~ldw~~tLfsL-SsfpNTgfMGIPLL~ALyGeeal~lav~ivVlq~II~~TLgL~LlE~~~ak~Li~kq 164 (604)
.+++.++++.+ .++ ...+.+ ++++|++++|+|++.++||+++..+++++.+++++++|+++..+++.++++.-..++
T Consensus 80 ~~~~~~~~~~~-~~~-~~~~~~~~~~~N~~~lglpi~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~ 157 (385)
T PF03547_consen 80 GFLLSRLFRLP-KEW-RGVFVLAASFGNTGFLGLPILQALFGERGVAYAIIFDVVNNIILWSLGYFLLESRSEKEDKSEE 157 (385)
T ss_pred HHHHHHhcCCC-ccc-ceEEEecccCCcchhhHHHHHHHHhcchhhhhehHHHHhhHHHHHHHHHHhhcccccccccccc
Confidence 33333433322 333 334444 688999999999999999999999999999999999999999999988777665555
Q ss_pred hHHHhhhceeeeeccceeeccCCCcccccccccCCCc
Q 007418 165 FPETAASIVSFKVDSDVVSLDGRDFLETDAEIGDDGK 201 (604)
Q Consensus 165 fpktaasIv~f~Id~~VlsL~G~~P~~~~aev~~~Gk 201 (604)
..+...+....+.|.+..+.++.+|.+++.+.+++++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (385)
T PF03547_consen 158 EPSSAESIDSEQEDSDEMSLDGSSPSSTEEEIDEDGS 194 (385)
T ss_pred cccccccccccccCCccccCCcccccccccccccCCc
Confidence 5555666677777777777777666666666665544
No 2
>COG0679 Predicted permeases [General function prediction only]
Probab=99.78 E-value=5.8e-19 Score=182.21 Aligned_cols=188 Identities=22% Similarity=0.427 Sum_probs=143.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcCChhhhhHHHHHHHHHHHHHHHHHHhhcCCcCcc-hHHHHHHHHHHHHHHHHH
Q 007418 7 LYLVLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTNDPYAM-NFRFIAADTLQKIIMLFV 85 (604)
Q Consensus 7 M~~VLsAVLPLFlLIaLGYls~R~~gIft~e~~s~LNrFVf~VALPaLLF~~Ia~~d~~~l-n~~fI~a~aL~~lIv~lI 85 (604)
|+.++..++|+|++|++||+++|+ +.++++.++.++++|+|+++||++|..+.+++.+.. ++.++.+..++.++++++
T Consensus 2 ~~~~~~~vlpi~lii~lGy~~~r~-~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (311)
T COG0679 2 MMIVFEVVLPIFLIILLGYLLKRF-GILDEEAARGLSRLVVYVALPALLFNSIATADLSGLADLGLIVASLVATLLAFFL 80 (311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh-cccCHHHHHHHHHHHHHHHhHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHHH
Confidence 577899999999999999999998 999999999999999999999999999999998876 677777766666666555
Q ss_pred HHHHHHHhhCCCcccceeeeeE-EeecchhhhHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHhcccch--hhh
Q 007418 86 LGIWTNFTKNGSLEWMITIFSL-STLPNTLVMGIPLLIAMYGEYSGSLMVQVVVLQCIIWYTLLLFLFEYRGAKM--LIM 162 (604)
Q Consensus 86 L~l~~rf~k~~~ldw~~tLfsL-SsfpNTgfMGIPLL~ALyGeeal~lav~ivVlq~II~~TLgL~LlE~~~ak~--Li~ 162 (604)
...+.++.++.+.+|. ..+.+ +.++|++++|+|++..+||++++.+++++++.+.+..++++.+.++..+.+. ..+
T Consensus 81 ~~~~~~~~~~~~~~~~-~~~~~~~~~~N~g~lg~pi~~~~~G~~gl~~~~i~~~~~~~~~~~~g~~~l~~~~~~~~~~~~ 159 (311)
T COG0679 81 LALIGRFLFKLDKRET-VIFALASAFPNIGFLGLPVALSLFGEKGLAYAVIFLIIGLFLMFTLGVILLARSGGGTNKSLL 159 (311)
T ss_pred HHHHHHHHhccchhhH-HHHHHHHHhcccchhhHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHH
Confidence 4444444443434433 23333 5889999999999999999999999999999999999999999888665443 222
Q ss_pred hhhHHH------hhhceeeeeccceeeccCCC-cccccccccCCCc
Q 007418 163 EQFPET------AASIVSFKVDSDVVSLDGRD-FLETDAEIGDDGK 201 (604)
Q Consensus 163 kqfpkt------aasIv~f~Id~~VlsL~G~~-P~~~~aev~~~Gk 201 (604)
+.+++. .+.++++ ++++.|.+ |...+..++..|.
T Consensus 160 ~~~~~~~~nP~i~a~i~g~-----~~~~~~i~lP~~~~~~~~~l~~ 200 (311)
T COG0679 160 SVLKKLLTNPLIIALILGL-----LLNLLGISLPAPLDTAVDLLAS 200 (311)
T ss_pred HHHHHHHhCcHHHHHHHHH-----HHHHcCCCCcHHHHHHHHHHHH
Confidence 223332 3333444 77777877 6555555554443
No 3
>PRK09903 putative transporter YfdV; Provisional
Probab=99.74 E-value=7.7e-18 Score=173.23 Aligned_cols=184 Identities=20% Similarity=0.261 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcCChhhhhHHHHHHHHHHHHHHHHHHhhcCCcCcc--hHHHHHHHHHHHHHHHHHH
Q 007418 9 LVLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTNDPYAM--NFRFIAADTLQKIIMLFVL 86 (604)
Q Consensus 9 ~VLsAVLPLFlLIaLGYls~R~~gIft~e~~s~LNrFVf~VALPaLLF~~Ia~~d~~~l--n~~fI~a~aL~~lIv~lIL 86 (604)
.++++++|+|++|++||+++|+ |+++++..+.+|++++|+++||++|+++++.+.++. ++.+++...++.++++++.
T Consensus 4 ~~~~~ilpif~ii~lG~~~~r~-~~~~~~~~~~ls~lv~~v~lPalif~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (314)
T PRK09903 4 FFIGDLLPIIVIMLLGYFSGRR-ETFSEDQARAFNKLVLNYALPAALFVSITRANREMIFADTRLTLVSLVVIVGCFFFS 82 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 4778999999999999999998 999999999999999999999999999998876543 4555555555444444433
Q ss_pred HHHHH-HhhCCCcccceeeeeE-EeecchhhhHHHHHHHHhCCCc---hhHHHHHHHHHHHHHHHHHHHHHHhcc----c
Q 007418 87 GIWTN-FTKNGSLEWMITIFSL-STLPNTLVMGIPLLIAMYGEYS---GSLMVQVVVLQCIIWYTLLLFLFEYRG----A 157 (604)
Q Consensus 87 ~l~~r-f~k~~~ldw~~tLfsL-SsfpNTgfMGIPLL~ALyGeea---l~lav~ivVlq~II~~TLgL~LlE~~~----a 157 (604)
++..+ +++++..+ .....+ ++++|++|+|+|++.++||+++ +.+ +.+..+++++.|++++++++..+ +
T Consensus 83 ~~~~~~~~~~~~~~--~~~~~~~~~~~N~gf~G~Pl~~~~~G~~~~~~~~~-a~~~~~~~~~~~~~g~~~~~~~~~~~~~ 159 (314)
T PRK09903 83 WFGCYKFFKRTHAE--AAVCALIAGSPTIGFLGFAVLDPIYGDSVSTGLVV-AIISIIVNAITIPIGLYLLNPSSGADGK 159 (314)
T ss_pred HHHHHHHhcCCcch--hhHhhhhhcCCCcccccHHHHHHHcCchhhhhhHH-HHHHHHHHHHHHHHHHHHHccccccccc
Confidence 33322 33322222 223333 5789999999999999999994 433 33445678889999999887432 1
Q ss_pred chhhhhhhHHH------hhhceeeeeccceeeccCCC-cccccccccCCCc
Q 007418 158 KMLIMEQFPET------AASIVSFKVDSDVVSLDGRD-FLETDAEIGDDGK 201 (604)
Q Consensus 158 k~Li~kqfpkt------aasIv~f~Id~~VlsL~G~~-P~~~~aev~~~Gk 201 (604)
+...++.+++. .+.+.++ ++++.|.+ |.-.+..++-.|+
T Consensus 160 ~~~~~~~l~~~~~nP~iia~~~gl-----~~~l~~i~lP~~i~~~l~~lg~ 205 (314)
T PRK09903 160 KNSNLSALISAAKEPVVWAPVLAT-----ILVLVGVKIPAAWDPTFNLIAK 205 (314)
T ss_pred cchHHHHHHHHHhchHHHHHHHHH-----HHHHcCCCCCHHHHHHHHHHHH
Confidence 11122333332 3333333 56777766 6555544444443
No 4
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=99.74 E-value=2.9e-18 Score=176.24 Aligned_cols=143 Identities=30% Similarity=0.376 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHhcCcCChhhhhHHHHHHHHHHHHHHHHHHhhcCCcC--cc-hHHHHHHHHHHHHHHHH
Q 007418 9 LVLTAVVPLYVAMILAYGS-VRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTNDPY--AM-NFRFIAADTLQKIIMLF 84 (604)
Q Consensus 9 ~VLsAVLPLFlLIaLGYls-~R~~gIft~e~~s~LNrFVf~VALPaLLF~~Ia~~d~~--~l-n~~fI~a~aL~~lIv~l 84 (604)
.++++++|+|+++++||++ +|+ |++++++.+.+|++|+|+++||++|+++.+.+.+ +. .+.+++...+..++.++
T Consensus 5 ~~~~~ilpv~~ii~lG~~~~~r~-~~~~~~~~~~l~~~v~~i~lP~lif~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (321)
T TIGR00946 5 VILETVLPILVVILLGYILGKRF-GILDEEHASGINRFVINFALPLTIFHSISTTLADILQKSQSPVVLFLWGAFSGSYA 83 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778889999999999999 787 9999999999999999999999999999987664 22 34444444444344444
Q ss_pred HHHHHHH-HhhCCCcccceeeeeE-EeecchhhhHHHHHHHHhCCCc---hhHHHHHHHHHHHHHHHHHHHHHHh
Q 007418 85 VLGIWTN-FTKNGSLEWMITIFSL-STLPNTLVMGIPLLIAMYGEYS---GSLMVQVVVLQCIIWYTLLLFLFEY 154 (604)
Q Consensus 85 IL~l~~r-f~k~~~ldw~~tLfsL-SsfpNTgfMGIPLL~ALyGeea---l~lav~ivVlq~II~~TLgL~LlE~ 154 (604)
+.++..+ +.+++..+ ...+.+ ++++|++|+|+|++.++||+++ ..+++.+.+.+.++.|++++.+...
T Consensus 84 l~~~~~~~~~~~~~~~--~~~~~~~~~~~N~~~~GlPl~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (321)
T TIGR00946 84 LIWLITKPLFKADYGK--LSGFLLVSALPNTAFIGYPLLLSLFGEEGAKILIAALFIDTGAVLMTIALGLFLVSE 156 (321)
T ss_pred HHHHHHHHHHhcccch--hhHHHHHhhhccceeehHHHHHHHhcccchhhhHHHHHHHhccchhHHHHHHHHhcc
Confidence 4444444 33333233 445555 5789999999999999999999 5666667777778889998877643
No 5
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=98.10 E-value=8.2e-06 Score=87.36 Aligned_cols=136 Identities=15% Similarity=0.154 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHHHHhc-CcCChhhhhHHHHHHHHHHHHHHHHHHhhcC-CcCcc-hHHHHH-HHHHHHHHHHHHHHH
Q 007418 13 AVVPLYVAMILAYGSVRWW-KIFSPDQCSGINRFVAIFAVPLLSFHFISTN-DPYAM-NFRFIA-ADTLQKIIMLFVLGI 88 (604)
Q Consensus 13 AVLPLFlLIaLGYls~R~~-gIft~e~~s~LNrFVf~VALPaLLF~~Ia~~-d~~~l-n~~fI~-a~aL~~lIv~lIL~l 88 (604)
-++.++++-.+||+++... ++++.+..+.+|++||++..|||+|..+++. +.+.+ +|+|+= -+.+.+++-.++.++
T Consensus 16 pvlqvl~i~~~G~~lA~~~~~lLp~dark~ln~Lvf~lFtPcLiFs~La~svtl~~ii~~wfiPVnv~Lt~~ig~liG~l 95 (408)
T KOG2722|consen 16 PVLQVLLITLVGFLLASDYVNLLPRDARKLLNKLVFYLFTPCLIFSKLAQSVTLEKIIQWWFIPVNVGLTFIIGSLIGWL 95 (408)
T ss_pred cHHHHHHHHHHHHHHhccccCcCCHHHHHHhhheeeeeecHHHHHHHHhhhccHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 5778889999999998743 8999999999999999999999999999876 66665 888873 344454555444555
Q ss_pred HHHHhhCCCcccceeeeeEEeecchhhhHHHHHHHHh-------CC------CchhHHHHHHHHHHHHHHHHHH
Q 007418 89 WTNFTKNGSLEWMITIFSLSTLPNTLVMGIPLLIAMY-------GE------YSGSLMVQVVVLQCIIWYTLLL 149 (604)
Q Consensus 89 ~~rf~k~~~ldw~~tLfsLSsfpNTgfMGIPLL~ALy-------Ge------eal~lav~ivVlq~II~~TLgL 149 (604)
..+..+..+.. ..-+.+.|+++|++.+-+-|+.++. |+ .++.|+.+...+..++.|+.+.
T Consensus 96 v~~I~rppp~~-~~fiia~~a~GN~gnlpL~Lv~alc~~~~~Pfg~~~~c~s~Gi~Y~sf~~~lg~il~wty~Y 168 (408)
T KOG2722|consen 96 VVKILRPPPQL-RGFIIACCAFGNSGNLPLILVPALCDEDGIPFGNREKCASRGISYVSFSQQLGQILRWTYVY 168 (408)
T ss_pred HhheecCChhh-cCeEEEEeecCCcCCcHHHHhHHHhcccCCCCCChhhhhhcchhHHHHHHHhhhhEEEEEEe
Confidence 55544433221 2445555789999999999999995 42 2344555555555555555443
No 6
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=97.39 E-value=0.00011 Score=76.32 Aligned_cols=60 Identities=48% Similarity=0.739 Sum_probs=53.8
Q ss_pred HHHHHHHHHhhCCCcchhhhhHHHHHHhhhhccchhhhhhhheeeecccCchhHHhhhcccccc
Q 007418 500 ILIMVWRKLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGECPSI 563 (604)
Q Consensus 500 il~mvwrkLirNPNtYsSliGl~Wslisfrw~i~mP~iv~~Si~IlSdaGlGMAMFSlGlf~a~ 563 (604)
++..+|||+.|||..|+.++|++|++. ++++|..+.++++.|+++-..+|||++|+.++.
T Consensus 171 ~~~~~~~~~~~nP~iia~i~Gl~~~~~----~i~lP~~l~~~l~~lg~~~~plaLl~lG~~l~~ 230 (321)
T TIGR00946 171 MLIFVWKKLIKFPPLWAPLLSVILSLV----GFKMPGLILKSISILSGATTPMALFSLGLALSP 230 (321)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHH----hhcCcHHHHHHHHHHHHHHHHHHHHHHHHhhCh
Confidence 344679999999999999999999996 456999999999999999999999999977764
No 7
>PRK09903 putative transporter YfdV; Provisional
Probab=96.83 E-value=0.00036 Score=72.56 Aligned_cols=59 Identities=17% Similarity=0.372 Sum_probs=54.6
Q ss_pred HHHHHhhCCCcchhhhhHHHHHHhhhhccchhhhhhhheeeecccCchhHHhhhccccccCCC
Q 007418 504 VWRKLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGECPSIFPF 566 (604)
Q Consensus 504 vwrkLirNPNtYsSliGl~Wslisfrw~i~mP~iv~~Si~IlSdaGlGMAMFSlGlf~a~~p~ 566 (604)
+.||+.|||..++.++|++|++ .++++|..+++.++.|+++-..+|||.+|+.++..+.
T Consensus 166 ~l~~~~~nP~iia~~~gl~~~l----~~i~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~ 224 (314)
T PRK09903 166 ALISAAKEPVVWAPVLATILVL----VGVKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKF 224 (314)
T ss_pred HHHHHHhchHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4678899999999999999987 5789999999999999999999999999999998754
No 8
>COG0679 Predicted permeases [General function prediction only]
Probab=96.16 E-value=0.0026 Score=66.48 Aligned_cols=60 Identities=27% Similarity=0.541 Sum_probs=55.6
Q ss_pred HHHHHHHHhhCCCcchhhhhHHHHHHhhhhccchhhhhhhheeeecccCchhHHhhhccccccC
Q 007418 501 LIMVWRKLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGECPSIF 564 (604)
Q Consensus 501 l~mvwrkLirNPNtYsSliGl~Wslisfrw~i~mP~iv~~Si~IlSdaGlGMAMFSlGlf~a~~ 564 (604)
...+-||+.|||--|+.++|+++++ ++++.|..+++++..|+++-...+|+++|+-++..
T Consensus 158 ~~~~~~~~~~nP~i~a~i~g~~~~~----~~i~lP~~~~~~~~~l~~a~~pl~li~lG~~L~~~ 217 (311)
T COG0679 158 LLSVLKKLLTNPLIIALILGLLLNL----LGISLPAPLDTAVDLLASAASPLALIALGLSLAFL 217 (311)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHH----cCCCCcHHHHHHHHHHHHhhhhHHHHHHhhhcchh
Confidence 3456799999999999999999998 67999999999999999999999999999999983
No 9
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=95.03 E-value=0.48 Score=49.27 Aligned_cols=138 Identities=7% Similarity=0.013 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcCChhhhhHHHH--HHHHHHHHHHHHHHhhcC--CcCcchHHHHHHHHHHHHHH
Q 007418 7 LYLVLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINR--FVAIFAVPLLSFHFISTN--DPYAMNFRFIAADTLQKIIM 82 (604)
Q Consensus 7 M~~VLsAVLPLFlLIaLGYls~R~~gIft~e~~s~LNr--FVf~VALPaLLF~~Ia~~--d~~~ln~~fI~a~aL~~lIv 82 (604)
+..++..++-+++=+++|.+++|+++ +..+.+.+ .+-.+.+=++++..+..+ .+.+..+..+++..+-.++.
T Consensus 133 ~~~i~~~~~~v~vPl~lG~~~r~~~p----~~~~~~~~~~~~s~~~l~liv~~~~~~~~~~i~~~~~~~~~~~~ll~~~~ 208 (286)
T TIGR00841 133 YLGIGLSLVAVLIPVSIGMLVKHKLP----QIAKIILKVGLISVFLLSVIIAVVGGINVENLATIGPLLLLVGILLPLAG 208 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHhCchHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHH
Confidence 44443336666777788888888632 22222222 111112222233323222 11111233333333333344
Q ss_pred HHHHHHHHHHhhCCCcccceeeeeEEeecchhhhHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHH
Q 007418 83 LFVLGIWTNFTKNGSLEWMITIFSLSTLPNTLVMGIPLLIAMYGEYSGSLMVQVVVLQCIIWYTLLLF 150 (604)
Q Consensus 83 ~lIL~l~~rf~k~~~ldw~~tLfsLSsfpNTgfMGIPLL~ALyGeeal~lav~ivVlq~II~~TLgL~ 150 (604)
|++.+.+.+..+.+..+ ..++..-++..|++ +|+++....|+++.....+++.++++++...+..+
T Consensus 209 ~~~g~~~a~~~~l~~~~-~~t~~~~~g~qN~~-lal~la~~~f~~~~a~~~~~~~v~~~~~~~~~a~~ 274 (286)
T TIGR00841 209 FLLGYLLAKLAGLPWAR-CRTISIEVGMQNSQ-LCSTIAQLSFSPEVAVPSAIFPLIYALFQLAFALL 274 (286)
T ss_pred HHHHHHHHHHhCCCHhh-heeeeeeeecccHH-HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444333223 13332225678988 99999999998766666666666666654444433
No 10
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=91.76 E-value=12 Score=39.75 Aligned_cols=113 Identities=13% Similarity=0.195 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCcCChhhhhHHHHHHHHHHHHHHHHHHhhcC----CcCcchHHHHHHHHHHHHHHHHH---
Q 007418 13 AVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTN----DPYAMNFRFIAADTLQKIIMLFV--- 85 (604)
Q Consensus 13 AVLPLFlLIaLGYls~R~~gIft~e~~s~LNrFVf~VALPaLLF~~Ia~~----d~~~ln~~fI~a~aL~~lIv~lI--- 85 (604)
.++-+++=+++|-+++|+++-.-+ ..+..-+.+-..++-++++..+.+. -..+++...++......+..+++
T Consensus 163 L~~~vllP~~~Gq~~r~~~~~~~~-~~~~~~~~~~~~~ll~iv~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 241 (313)
T PF13593_consen 163 LVLTVLLPLVLGQLLRRWVPKWVA-RHKKPLSLLSQLALLLIVYSAFSSAFAQGAWHSVSAAALALIVAVSLLLLLVVLV 241 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 344444455667777765321111 2344455556666666666666544 12233333222222111222111
Q ss_pred -HHHHHHHhhCCCcccceeeeeEEeecchhhhHHHHHHHHhCCC
Q 007418 86 -LGIWTNFTKNGSLEWMITIFSLSTLPNTLVMGIPLLIAMYGEY 128 (604)
Q Consensus 86 -L~l~~rf~k~~~ldw~~tLfsLSsfpNTgfMGIPLL~ALyGee 128 (604)
.+...+..+..+.|. .++ .+|+--.+.-+|+|++..+|++.
T Consensus 242 ~~~~~~r~~~~~~~d~-iA~-~F~gs~Ksl~~gvpl~~~lf~~~ 283 (313)
T PF13593_consen 242 LGWLAARLLGFSRPDR-IAV-LFCGSQKSLALGVPLASILFPGH 283 (313)
T ss_pred HHHHHHhhcCCChhhE-EEE-EEEcCcCcchhHHHHHHHHcccc
Confidence 222333333232341 233 23555788899999999999874
No 11
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=87.21 E-value=3.7 Score=44.96 Aligned_cols=74 Identities=14% Similarity=0.125 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcCChhhhhHHHHHHHHHHHHHHHHHHhhcCCcCcc---hHHHHHHHHHHHHHHHH
Q 007418 10 VLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTNDPYAM---NFRFIAADTLQKIIMLF 84 (604)
Q Consensus 10 VLsAVLPLFlLIaLGYls~R~~gIft~e~~s~LNrFVf~VALPaLLF~~Ia~~d~~~l---n~~fI~a~aL~~lIv~l 84 (604)
.+..+-|+.+++++|-++.-. |+++....+.+-.+|..+.+|+.++..+.+.|+..+ ..+.++++.++.+.+.+
T Consensus 21 ~f~~l~~~vl~~~~~~~lsnl-gli~~p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~F~~~~~g~vi 97 (378)
T PF05684_consen 21 FFKYLPGAVLCYLLGMLLSNL-GLIDSPASSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLAFLIGAVGTVI 97 (378)
T ss_pred hHhhcCHHHHHHHHHHHHHHC-CCcCCCCcchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 345677888999999999997 999656667799999999999999999999998865 56777777766665443
No 12
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=79.72 E-value=53 Score=36.03 Aligned_cols=125 Identities=13% Similarity=0.110 Sum_probs=66.0
Q ss_pred ChHHHHH--HHHHHHHHHHHHHHHHHHHHhcCcCChhhhhHHHHHHHHHHHHHHHHHHhh--cCCcCcc-----hHHHH-
Q 007418 3 TWKDLYL--VLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFIS--TNDPYAM-----NFRFI- 72 (604)
Q Consensus 3 ~~~dM~~--VLsAVLPLFlLIaLGYls~R~~gIft~e~~s~LNrFVf~VALPaLLF~~Ia--~~d~~~l-----n~~fI- 72 (604)
++..+.. ++..++|+.+-++.=|++.|+ +--+ -..+.+-..+--++++.|++.-+. ..+-+.+ +...+
T Consensus 173 ~~~~i~~Sv~lyl~iPli~G~lTR~i~~k~-kg~~-~~~~~f~p~ispi~ligLl~TivliF~~qg~~Iv~~p~~i~liA 250 (342)
T COG0798 173 PFWTIAKSVLLYLGIPLIAGVLTRYILIKK-KGRE-WYESRFLPKISPIALIGLLLTIVLIFAFQGEQIVEQPLDILLIA 250 (342)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccch-HHHHHHHhhcChHHHHHHHHHHHHHHHHhHHHHHhChHHHHHHH
Confidence 3444433 455778888888888888887 3321 123334444444555655554221 1111111 22222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCcccceeeeeEEeecchhhhHHHHHHHHhC-CCchh
Q 007418 73 AADTLQKIIMLFVLGIWTNFTKNGSLEWMITIFSLSTLPNTLVMGIPLLIAMYG-EYSGS 131 (604)
Q Consensus 73 ~a~aL~~lIv~lIL~l~~rf~k~~~ldw~~tLfsLSsfpNTgfMGIPLL~ALyG-eeal~ 131 (604)
..+.+...+++.+.++..+..+.+-.+ ..-..+++-+|.-=+.+++..++|| +.+..
T Consensus 251 Ipl~iy~~~~~~i~~~i~k~lgl~y~~--~~~~~ft~aSNnfeLAiAvAi~lfG~~s~aA 308 (342)
T COG0798 251 IPLLIYFLLMFFISYFIAKALGLPYED--AAALVFTGASNNFELAIAVAIALFGLTSGAA 308 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCChhh--hhceeeeeccccHHHHHHHHHHhcCccccch
Confidence 223334444555555555544433233 3333445668988999999999999 44433
No 13
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=79.02 E-value=18 Score=38.82 Aligned_cols=64 Identities=19% Similarity=0.201 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhhCCCcccceeeeeEE-eecchhhhHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHH
Q 007418 81 IMLFVLGIWTNFTKNGSLEWMITIFSLS-TLPNTLVMGIPLLIAMYGEYSGSLMVQVVVLQCIIWYTLLL 149 (604)
Q Consensus 81 Iv~lIL~l~~rf~k~~~ldw~~tLfsLS-sfpNTgfMGIPLL~ALyGeeal~lav~ivVlq~II~~TLgL 149 (604)
+.+.+.+...+..+.+..| .....++ +.-| .-+|+++...+||+... ++...+...++-.+..+
T Consensus 258 ~~~~lg~~~~r~~~l~~~~--~~a~~~e~g~qN-~~lai~lA~~~f~~~~~--~a~~~~~~~l~e~~~~~ 322 (328)
T TIGR00832 258 IMFFLTFALAKKLGLPYSI--TAPAAFTGASNN-FELAIAVAISLFGLNSG--AALATVVGPLIEVPVML 322 (328)
T ss_pred HHHHHHHHHHHHhCcChhh--hhhheehhhhhh-HHHHHHHHHHhCCCCcc--cHHHHHhhhhhehhhhh
Confidence 3344444444544433333 2233333 4455 57999999999987532 33333444444444443
No 14
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=76.23 E-value=89 Score=34.02 Aligned_cols=127 Identities=13% Similarity=0.176 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcCChhhhhHHHHHH---HHHHHHHHHHHHhhcCCcCcchHHHHHHH--HHHHHHHHHH
Q 007418 11 LTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFV---AIFAVPLLSFHFISTNDPYAMNFRFIAAD--TLQKIIMLFV 85 (604)
Q Consensus 11 LsAVLPLFlLIaLGYls~R~~gIft~e~~s~LNrFV---f~VALPaLLF~~Ia~~d~~~ln~~fI~a~--aL~~lIv~lI 85 (604)
.+.+..+++=+.+|-+++++ +. +..+...+.+ -..++=+.++...+..-.+.....+.... .+-.++.|.+
T Consensus 164 ~~i~~~vllP~~LG~~~r~~---~~-~~~~~~~~~l~~vs~~~illIv~~~~s~~~~~~~~~~~~v~~~v~~~n~lg~~~ 239 (319)
T COG0385 164 LSILLQVLLPFVLGQLLRPL---LP-KWVERLKKALPPVSVLSILLIVYAAFSAAVENGIWSGLLIFVAVILHNLLGLLL 239 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HH-HHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555667666665 22 3334333333 33334344444444332221222222111 1111222323
Q ss_pred HHHHHHHhhCCCcccceeeeeEE-eecchhhhHHHHHHHHhC-CCchhHHHHHHHHHHHHH
Q 007418 86 LGIWTNFTKNGSLEWMITIFSLS-TLPNTLVMGIPLLIAMYG-EYSGSLMVQVVVLQCIIW 144 (604)
Q Consensus 86 L~l~~rf~k~~~ldw~~tLfsLS-sfpNTgfMGIPLL~ALyG-eeal~lav~ivVlq~II~ 144 (604)
.+...++.+.+..| .+++ +++ +.-| +-.|+|+....++ +....+.+++.++|++..
T Consensus 240 gy~~ar~~g~~~a~-~iti-~ie~g~qn-~~lg~alA~~f~~~~~~alP~aif~~~q~~~~ 297 (319)
T COG0385 240 GYFGARLLGFDKAD-EITI-AIEGGMQN-LGLGAALAAAFFGNPLMALPLAIFSVWQNMSG 297 (319)
T ss_pred HHHHHHHhCCChhh-eeeE-EEeecccc-HHHHHHHHHhcCCCchhHhHHHHHHHHHHHHH
Confidence 33334444433233 1344 334 4466 5789999999556 444455566666666543
No 15
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=65.78 E-value=86 Score=34.44 Aligned_cols=134 Identities=13% Similarity=0.030 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHHhcCcCChhhhhHHHHHHHHHHHHHHHHHHhhcCCcCcc---hHHHHHHHHHHHHHHHHHHHHHH
Q 007418 14 VVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTNDPYAM---NFRFIAADTLQKIIMLFVLGIWT 90 (604)
Q Consensus 14 VLPLFlLIaLGYls~R~~gIft~e~~s~LNrFVf~VALPaLLF~~Ia~~d~~~l---n~~fI~a~aL~~lIv~lIL~l~~ 90 (604)
.+|-.+++-+|--.--..|+|+ .|+....-|-+..+|+.++.-+-+-|..++ ..++++.+..+.+..++-.+++.
T Consensus 31 ~Vpa~v~iy~gamff~t~Glfs--~~S~~y~~v~n~llpamI~lmLlqcd~Rki~Klg~rll~ifli~sv~~vlGfIl~y 108 (384)
T COG5505 31 AVPAAVIIYAGAMFFTTVGLFS--VESPVYDTVWNYLLPAMIPLMLLQCDVRKIFKLGRRLLFIFLISSVGTVLGFILAY 108 (384)
T ss_pred hhhHHHHHHHHHHHHhhccccc--ccCcHHHHHHHHHHHHHHHHHHHHccHHHHHhhcchhhHHHHHHHHHHHHHHHHHH
Confidence 4676777777765555459994 788888889999999999998888887755 56777776666555443223332
Q ss_pred -HHhhCCCcccceeeeeEEee----cchhhhHHHHHHHHhCC--CchhHHHHHHHHHHHHHHHHHHHHHHh
Q 007418 91 -NFTKNGSLEWMITIFSLSTL----PNTLVMGIPLLIAMYGE--YSGSLMVQVVVLQCIIWYTLLLFLFEY 154 (604)
Q Consensus 91 -rf~k~~~ldw~~tLfsLSsf----pNTgfMGIPLL~ALyGe--eal~lav~ivVlq~II~~TLgL~LlE~ 154 (604)
.+......-|..+-...+++ .|..-| ++.+-- +...+....+.+..-+|+.+.+.+..+
T Consensus 109 p~~ksf~gd~Wka~gmi~gSytGGSaNmAAm-----qaaLeVP~~~fsatlaaDtv~ySll~~lli~iVpy 174 (384)
T COG5505 109 PLLKSFIGDLWKAGGMISGSYTGGSANMAAM-----QAALEVPGEYFSATLAADTVMYSLLFFLLISIVPY 174 (384)
T ss_pred HHHhhhcchHHhhhhheeeeeeCCcchHHHH-----HhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221112244222111344 444333 444433 333455566666656666666665443
No 16
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=47.41 E-value=83 Score=34.63 Aligned_cols=82 Identities=10% Similarity=0.064 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHhcCcCChhh---hhHHHHHHHHHHHHHHHH-HHhhcCCcCcc----hHHHHHHHHHHHHHHHHHHHH
Q 007418 17 LYVAMILAYGSVRWWKIFSPDQ---CSGINRFVAIFAVPLLSF-HFISTNDPYAM----NFRFIAADTLQKIIMLFVLGI 88 (604)
Q Consensus 17 LFlLIaLGYls~R~~gIft~e~---~s~LNrFVf~VALPaLLF-~~Ia~~d~~~l----n~~fI~a~aL~~lIv~lIL~l 88 (604)
...++++|-+++.. ++++++- ++...+|+.....+.+++ -.+...+++++ ++.+++..+.+.+.+.+..++
T Consensus 207 ~v~mII~~vi~k~~-gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~vviiv~~Vlg~ii~s~l 285 (347)
T TIGR00783 207 YAFMILIAAALKAF-GLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQFVVICLSVVVAMILGGAF 285 (347)
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchhHhhhHHHHHHHHHHHHHH
Confidence 55677788888887 9999864 445666777767776666 46777888755 355555555444444433444
Q ss_pred HHHHhhCCCcc
Q 007418 89 WTNFTKNGSLE 99 (604)
Q Consensus 89 ~~rf~k~~~ld 99 (604)
..++.+--+.|
T Consensus 286 vGKllG~YPiE 296 (347)
T TIGR00783 286 LGKLMGMYPVE 296 (347)
T ss_pred HHHHhCCChHH
Confidence 44444433345
No 17
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=40.51 E-value=2.9e+02 Score=28.72 Aligned_cols=24 Identities=21% Similarity=0.074 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCcCcc
Q 007418 44 RFVAIFAVPLLSFHFISTNDPYAM 67 (604)
Q Consensus 44 rFVf~VALPaLLF~~Ia~~d~~~l 67 (604)
..+.-+++|+-++.+++..++..|
T Consensus 262 Tvvt~IflP~t~IaGiyGMNf~~m 285 (318)
T TIGR00383 262 TVVSTIFIPLTFIAGIYGMNFKFM 285 (318)
T ss_pred HHHHHHHHHHHHHHHHHhCCcccC
Confidence 345567888888888998887644
No 18
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=39.52 E-value=2e+02 Score=30.58 Aligned_cols=66 Identities=11% Similarity=0.037 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcCChhhhhHHHHHHHHHHHHHHHHHHhhcCCcCcc---hHHHHHHHHH
Q 007418 6 DLYLVLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTNDPYAM---NFRFIAADTL 77 (604)
Q Consensus 6 dM~~VLsAVLPLFlLIaLGYls~R~~gIft~e~~s~LNrFVf~VALPaLLF~~Ia~~d~~~l---n~~fI~a~aL 77 (604)
++...+..++-...=..++.+.-+. ...=.+-..+.-+.+|.-+..+++..|+..| +|.+-..+++
T Consensus 234 ~~~~~~~~~l~~l~d~~~s~is~~~------N~imk~LTi~s~iflPpTlIagiyGMNf~~mPel~~~~Gy~~~l 302 (322)
T COG0598 234 EMLEALRERLSSLLDAYLSLINNNQ------NEIMKILTIVSTIFLPPTLITGFYGMNFKGMPELDWPYGYPIAL 302 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhhHHHHcccccCCCCCcCCCCcccHHHHH
Confidence 4445555555555555666666554 2233344556667888888888898888744 7766444433
No 19
>PRK04972 putative transporter; Provisional
Probab=37.09 E-value=5.6e+02 Score=29.78 Aligned_cols=26 Identities=15% Similarity=0.277 Sum_probs=20.2
Q ss_pred HHHHH--HHHHHHHHHHHHHHHHHHhcCc
Q 007418 7 LYLVL--TAVVPLYVAMILAYGSVRWWKI 33 (604)
Q Consensus 7 M~~VL--sAVLPLFlLIaLGYls~R~~gI 33 (604)
+.+.+ +.++.+|+.+++||+++|. ++
T Consensus 5 ~~~~l~~~~~~~lf~~i~lG~~lG~i-~~ 32 (558)
T PRK04972 5 VADLLNGNYILLLFVVLALGLCLGKL-RL 32 (558)
T ss_pred HHHHhccCChHHHHHHHHHHHhhhce-EE
Confidence 34445 3588999999999999997 65
No 20
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=34.32 E-value=4.9e+02 Score=30.46 Aligned_cols=39 Identities=0% Similarity=0.012 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCcCChhhhhHHHHHHHHHHHHHHHHHHhhc
Q 007418 22 ILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFIST 61 (604)
Q Consensus 22 aLGYls~R~~gIft~e~~s~LNrFVf~VALPaLLF~~Ia~ 61 (604)
++|+++.|+ ..-..+..+.+-+++++..+...+|..++.
T Consensus 373 l~~~~l~~~-~~k~~~~~~~~~~il~~~gi~sii~G~lyG 411 (646)
T PRK05771 373 LIGLLLSFK-LKKKSEGLKRLLKILIYLGISTIIWGLLTG 411 (646)
T ss_pred HHHHHHHHh-cccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666654 211234677889999999999999988765
No 21
>PF07074 TRAP-gamma: Translocon-associated protein, gamma subunit (TRAP-gamma); InterPro: IPR009779 This family consists of several eukaryotic translocon-associated protein, gamma subunit (TRAP-gamma) sequences. The translocation site (translocon), at which nascent polypeptides pass through the endoplasmic reticulum membrane, contains a component previously called 'signal sequence receptor' that is now renamed as 'translocon-associated protein' (TRAP). The TRAP complex is comprised of four membrane proteins alpha, beta, gamma and delta, which are present in a stoichiometric relation, and are genuine neighbours in intact microsomes. The gamma subunit is predicted to span the membrane four times [].; GO: 0006613 cotranslational protein targeting to membrane, 0005784 Sec61 translocon complex, 0030176 integral to endoplasmic reticulum membrane
Probab=29.83 E-value=2.7e+02 Score=28.00 Aligned_cols=25 Identities=32% Similarity=0.335 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCcCc
Q 007418 41 GINRFVAIFAVPLLSFHFISTNDPYA 66 (604)
Q Consensus 41 ~LNrFVf~VALPaLLF~~Ia~~d~~~ 66 (604)
.+|.++. -++|..+|+.|.+.++.+
T Consensus 22 Y~nA~iv-S~vPi~LF~~Ih~m~~~~ 46 (170)
T PF07074_consen 22 YGNALIV-SAVPIWLFWRIHQMDLYD 46 (170)
T ss_pred hhHHHHH-HHHHHHHHHHHHhcccch
Confidence 3677776 799999999999998763
No 22
>PRK09546 zntB zinc transporter; Reviewed
Probab=29.35 E-value=1.4e+02 Score=31.62 Aligned_cols=26 Identities=8% Similarity=-0.005 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCcCcc
Q 007418 42 INRFVAIFAVPLLSFHFISTNDPYAM 67 (604)
Q Consensus 42 LNrFVf~VALPaLLF~~Ia~~d~~~l 67 (604)
+-+++.-+++|.-++.+++..|+..|
T Consensus 266 ~Ltilt~IflPlT~IaGiyGMNf~~m 291 (324)
T PRK09546 266 TMSLMAMVFLPTTFLTGLFGVNLGGI 291 (324)
T ss_pred HHHHHHHHHHHHHHHHhhhccccCCC
Confidence 44456668889999999999887755
No 23
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=29.02 E-value=1.5e+02 Score=35.98 Aligned_cols=32 Identities=13% Similarity=0.062 Sum_probs=24.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhcCCcCcc
Q 007418 36 PDQCSGINRFVAIFAVPLLSFHFISTNDPYAM 67 (604)
Q Consensus 36 ~e~~s~LNrFVf~VALPaLLF~~Ia~~d~~~l 67 (604)
.+..+.+..++..+.+|++....=.+.|+..+
T Consensus 313 ~~l~ekle~~~~~lflPlFFv~vGl~idl~~l 344 (832)
T PLN03159 313 VTLIEKLEDFVSGLLLPLFFAISGLKTNVTKI 344 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhheeeHHHh
Confidence 44567888999999999998876667666544
No 24
>PF14003 YlbE: YlbE-like protein
Probab=27.74 E-value=25 Score=30.05 Aligned_cols=15 Identities=40% Similarity=0.811 Sum_probs=13.3
Q ss_pred H-HHHhhCCCcchhhh
Q 007418 505 W-RKLIRNPNTYSSLI 519 (604)
Q Consensus 505 w-rkLirNPNtYsSli 519 (604)
| |+|.|||.-|.++.
T Consensus 14 WYR~LsR~P~~l~~fe 29 (65)
T PF14003_consen 14 WYRILSRNPEELEAFE 29 (65)
T ss_pred HHHHHccCHHHHHHHH
Confidence 5 99999999998875
No 25
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=26.69 E-value=4.6e+02 Score=28.01 Aligned_cols=109 Identities=17% Similarity=0.144 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHhhcCCcCcc-----hHHHHHHHHHHHHHHHHH-HHHHHHHhh-CCCcccceeeeeEEeecchhhhH
Q 007418 45 FVAIFAVPLLSFHFISTNDPYAM-----NFRFIAADTLQKIIMLFV-LGIWTNFTK-NGSLEWMITIFSLSTLPNTLVMG 117 (604)
Q Consensus 45 FVf~VALPaLLF~~Ia~~d~~~l-----n~~fI~a~aL~~lIv~lI-L~l~~rf~k-~~~ldw~~tLfsLSsfpNTgfMG 117 (604)
.+..+++-.+.|..=.+.+.+++ ||++.+...+..++++-+ .+....... ..+.+...++..+++.|-|.--+
T Consensus 31 ~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~~l~~~~~~~~l~~Gl~~~~~lPtTv~S~ 110 (313)
T PF13593_consen 31 YVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLSRLFPAFLPPELALGLLILACLPTTVSSS 110 (313)
T ss_pred hhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhhCCchhhHH
Confidence 45566655555544445555544 677666554443433322 222222221 11122224555556779998888
Q ss_pred HHHHHHHhCCCchhHH-HHHHHHHHHHHHHHHHHHHH
Q 007418 118 IPLLIAMYGEYSGSLM-VQVVVLQCIIWYTLLLFLFE 153 (604)
Q Consensus 118 IPLL~ALyGeeal~la-v~ivVlq~II~~TLgL~LlE 153 (604)
+-+....-|+++..+. +.+.-+-.++..|+.+.++-
T Consensus 111 v~~T~~AgGN~a~Al~~~~~snllgv~ltP~ll~l~l 147 (313)
T PF13593_consen 111 VVLTRLAGGNVALALFNAVLSNLLGVFLTPLLLLLLL 147 (313)
T ss_pred HHHHHHcCCCHHHHHHHHHHHhhhhHhHHHHHHHHHh
Confidence 8888888898875532 23333444567777776655
No 26
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.22 E-value=63 Score=28.35 Aligned_cols=36 Identities=22% Similarity=0.377 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcCChhhhhHHHHH
Q 007418 7 LYLVLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRF 45 (604)
Q Consensus 7 M~~VLsAVLPLFlLIaLGYls~R~~gIft~e~~s~LNrF 45 (604)
++..|.+.+-+.+.|.+||+..|+ -+ +..|.+|..+
T Consensus 4 ~lltFg~Fllvi~gMsiG~I~krk-~I--~GSCGGi~al 39 (77)
T COG2991 4 FLLTFGIFLLVIAGMSIGYIFKRK-SI--KGSCGGIAAL 39 (77)
T ss_pred HHHHHHHHHHHHHHHhHhhheecc-cc--ccccccHHhh
Confidence 345667778888999999999997 33 3457666554
No 27
>PRK10835 hypothetical protein; Provisional
Probab=25.63 E-value=5.8e+02 Score=27.85 Aligned_cols=21 Identities=19% Similarity=0.112 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHhcCcCChh
Q 007418 16 PLYVAMILAYGSVRWWKIFSPD 37 (604)
Q Consensus 16 PLFlLIaLGYls~R~~gIft~e 37 (604)
.++.++++|..+.|+ |+++++
T Consensus 198 ~~l~lfLlG~~l~R~-g~~~~~ 218 (373)
T PRK10835 198 QLAGMMLLGAALMRS-GWLKGQ 218 (373)
T ss_pred HHHHHHHHHHHHHhc-ccccCC
Confidence 356689999999998 999853
No 28
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=25.40 E-value=3.2e+02 Score=27.48 Aligned_cols=127 Identities=19% Similarity=0.121 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHhcCcCChhhhhHHHHHHHHHHHHHHHHH-Hh--hcCC--cC---cchHHHHHHHHHHHHHHHHHHHHHH
Q 007418 19 VAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFH-FI--STND--PY---AMNFRFIAADTLQKIIMLFVLGIWT 90 (604)
Q Consensus 19 lLIaLGYls~R~~gIft~e~~s~LNrFVf~VALPaLLF~-~I--a~~d--~~---~ln~~fI~a~aL~~lIv~lIL~l~~ 90 (604)
+.+++|+++++. ...+ .+.. .-+..+++=+|+|. .+ .+++ .+ +++++.+..-....+..++..++..
T Consensus 3 ~~li~Gi~lG~~-~~~~---~~~~-~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSllgg~l~~ 77 (191)
T PF03956_consen 3 IALILGILLGYF-LRPP---FSLI-DKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSLLGGLLAS 77 (191)
T ss_pred eeHHHHHHHHHH-hccc---cccc-ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778887776 3333 2222 23334445556664 22 2221 11 2345544433333333332233333
Q ss_pred HHhhCCCcccceeeeeEEeecchhhhHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 007418 91 NFTKNGSLEWMITIFSLSTLPNTLVMGIPLLIAMYGEYSGSLMVQVVVLQCIIWYTLLLFLFEY 154 (604)
Q Consensus 91 rf~k~~~ldw~~tLfsLSsfpNTgfMGIPLL~ALyGeeal~lav~ivVlq~II~~TLgL~LlE~ 154 (604)
.+......+ .+-.-+.|+-+.+=| |++..++|++....+.+.+++--++...+..++..+
T Consensus 78 ~ll~~~~~~---~lav~sG~GwYSlsg-~~i~~~~~~~~G~iafl~n~~RE~~a~~~~P~~~r~ 137 (191)
T PF03956_consen 78 LLLGLSLKE---SLAVASGFGWYSLSG-VLITQLYGPELGTIAFLSNLFREILAIILIPLLARY 137 (191)
T ss_pred HHhcCCHHH---HHHHHccCcHHHhHH-HHHHhhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333222122 222224666665544 567778999888888888888777777777777763
No 29
>TIGR00807 malonate_madL malonate transporter, MadL subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM. The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=24.90 E-value=4.5e+02 Score=25.22 Aligned_cols=51 Identities=12% Similarity=0.096 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHhcCcCChhhhhHHHHHHHHHHHHHHHHHHhhcCCcCcc
Q 007418 15 VPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTNDPYAM 67 (604)
Q Consensus 15 LPLFlLIaLGYls~R~~gIft~e~~s~LNrFVf~VALPaLLF~~Ia~~d~~~l 67 (604)
+-++++|++...+.|+ |+++++..+++.-.-. .=+|..+--+-.++-...+
T Consensus 38 iAMlLLi~~~~~l~k~-G~l~~~te~Gi~FW~a-MYIPIVVAMAA~QNVv~Al 88 (125)
T TIGR00807 38 IAMILLIISKELLAKR-GHLPQVTQFGVGFWSA-MYIPIVVAMAAGQNVVAAL 88 (125)
T ss_pred HHHHHHHHHHHHHHHc-CCCChhHHhHHHHHHc-cHhHHHHHHhhhchhHHHh
Confidence 5678899999999997 9999998888775544 2357666555445544444
No 30
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=24.75 E-value=3.2e+02 Score=31.76 Aligned_cols=31 Identities=10% Similarity=0.130 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcCcc--hHHHHH
Q 007418 43 NRFVAIFAVPLLSFHFISTNDPYAM--NFRFIA 73 (604)
Q Consensus 43 NrFVf~VALPaLLF~~Ia~~d~~~l--n~~fI~ 73 (604)
..+.+.+++|.++|..=.+.+...+ |+.-++
T Consensus 65 ~~lf~~~~LPpIlFe~g~~l~~~~f~~n~~~Il 97 (559)
T TIGR00840 65 SSYFFLYLLPPIVLDAGYFMPQRNFFENLGSIL 97 (559)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3677779999999999888887766 554443
No 31
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=23.69 E-value=3.5e+02 Score=30.63 Aligned_cols=85 Identities=9% Similarity=0.018 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHhcCcCChh---hhhHHHHHHHHHHHHHHHHH-HhhcCCcCcc----hHHHHHHHHHHHHHHHHHH
Q 007418 15 VPLYVAMILAYGSVRWWKIFSPD---QCSGINRFVAIFAVPLLSFH-FISTNDPYAM----NFRFIAADTLQKIIMLFVL 86 (604)
Q Consensus 15 LPLFlLIaLGYls~R~~gIft~e---~~s~LNrFVf~VALPaLLF~-~Ia~~d~~~l----n~~fI~a~aL~~lIv~lIL 86 (604)
+|-|+.|++=-...|..++++++ .++...+|+.+-..+++++. .+.-.|++++ ++.+++......+.+.+..
T Consensus 271 ih~~a~mIi~~~i~K~~~lvP~~~e~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t~~~vv~~~~~Vl~~~~~a 350 (414)
T PF03390_consen 271 IHAYAWMIILVAIVKAFGLVPESLEEGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAFTPQYVVIVLATVLGAVIGA 350 (414)
T ss_pred CcHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 35555666655666656999875 56678999999999999886 5776888755 5555554444333333333
Q ss_pred HHHHHHhhCCCcc
Q 007418 87 GIWTNFTKNGSLE 99 (604)
Q Consensus 87 ~l~~rf~k~~~ld 99 (604)
++..++.+--+.|
T Consensus 351 ~~vG~l~g~YPvE 363 (414)
T PF03390_consen 351 FLVGKLVGFYPVE 363 (414)
T ss_pred HHHHHHhCCChHH
Confidence 3333433333344
No 32
>PF11457 DUF3021: Protein of unknown function (DUF3021); InterPro: IPR021560 This is a bacterial family of uncharacterised proteins.
Probab=23.36 E-value=5.3e+02 Score=23.54 Aligned_cols=28 Identities=18% Similarity=0.346 Sum_probs=20.1
Q ss_pred cCChhhhhHHHHHHHHHHHHHHHHHHhh
Q 007418 33 IFSPDQCSGINRFVAIFAVPLLSFHFIS 60 (604)
Q Consensus 33 Ift~e~~s~LNrFVf~VALPaLLF~~Ia 60 (604)
+++.|..+-+.+.+..+.+-++.+..++
T Consensus 63 if~~e~~s~~~~~iiHf~~~~~~~~~~~ 90 (136)
T PF11457_consen 63 IFEIERWSLLKQTIIHFIITYAIFLILA 90 (136)
T ss_pred HHcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 4555777778888888888777776544
No 33
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=23.11 E-value=2.3e+02 Score=30.64 Aligned_cols=33 Identities=12% Similarity=0.020 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCcCcc---hHHHHHHHH
Q 007418 44 RFVAIFAVPLLSFHFISTNDPYAM---NFRFIAADT 76 (604)
Q Consensus 44 rFVf~VALPaLLF~~Ia~~d~~~l---n~~fI~a~a 76 (604)
..+.-+.+|.-++.+++..++..| +|.+-..++
T Consensus 260 Tv~s~if~pptliagiyGMNf~~mP~~~~~~g~~~~ 295 (316)
T PRK11085 260 SVVSVVFLPPTLVASSYGMNFEFMPELKWSFGYPGA 295 (316)
T ss_pred HHHHHHHHHHHHHHhhcccccCCCCCCCCcHHHHHH
Confidence 445567888888889998887744 555443333
No 34
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=23.07 E-value=28 Score=37.64 Aligned_cols=21 Identities=14% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcC
Q 007418 42 INRFVAIFAVPLLSFHFISTN 62 (604)
Q Consensus 42 LNrFVf~VALPaLLF~~Ia~~ 62 (604)
+--+|+.+.+=+++...+++.
T Consensus 80 LGlLCiilimi~lLv~~L~tL 100 (381)
T PF05297_consen 80 LGLLCIILIMIVLLVSMLWTL 100 (381)
T ss_dssp ---------------------
T ss_pred chHHHHHHHHHHHHHHHHHHh
Confidence 444555555555555555544
No 35
>COG2456 Uncharacterized conserved protein [Function unknown]
Probab=22.80 E-value=2.8e+02 Score=26.26 Aligned_cols=48 Identities=10% Similarity=0.024 Sum_probs=31.4
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCChhhhhHHHHHHHHH
Q 007418 1 MITWKDLYLVLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIF 49 (604)
Q Consensus 1 Mi~~~dM~~VLsAVLPLFlLIaLGYls~R~~gIft~e~~s~LNrFVf~V 49 (604)
||.-...+...+.+.-++++.+++|...|. +-=+-+..+.+-+..+|+
T Consensus 1 ~~~~~~~m~~iQ~igii~~l~~m~~~~~r~-k~~k~s~~~ll~W~~~wv 48 (121)
T COG2456 1 KILEEKLMYTIQYIGIIFILFLMIYVFFRL-KRRKLSLSDLLFWEAFWV 48 (121)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCccchHHHHHHHH
Confidence 566667777888888889999999998876 333333334444444433
No 36
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=22.55 E-value=3.1e+02 Score=24.70 Aligned_cols=42 Identities=12% Similarity=0.255 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHhcCcCChhhhhHHHHHHHHHHHHHHHHHHh
Q 007418 14 VVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFI 59 (604)
Q Consensus 14 VLPLFlLIaLGYls~R~~gIft~e~~s~LNrFVf~VALPaLLF~~I 59 (604)
++|.+++.++-++.-.. +++....=-.+.+...|=+.+|..+
T Consensus 2 ~~P~~li~~~s~~~f~~----~~~~~~~rv~l~it~lL~~~~~~~~ 43 (237)
T PF02932_consen 2 IIPCILIVVLSWLSFWL----PPESGPERVTLGITTLLAMTVFLLM 43 (237)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHSTHHHHHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHhheEe----CccccccccccchhHHHHHHHHHhh
Confidence 57888887777776664 3443312223344444444444443
No 37
>COG4393 Predicted membrane protein [Function unknown]
Probab=22.23 E-value=1.4e+02 Score=33.06 Aligned_cols=46 Identities=22% Similarity=0.345 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcCChhhhhHHHHHHHHHHHHHHHHHHhhcC
Q 007418 7 LYLVLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTN 62 (604)
Q Consensus 7 M~~VLsAVLPLFlLIaLGYls~R~~gIft~e~~s~LNrFVf~VALPaLLF~~Ia~~ 62 (604)
+.+++.+++|+-+++++-|- ++ -++ -..++.++++=+-.|.++..+
T Consensus 5 Fvs~Lqs~LP~alLlg~~w~--~~-p~~-------~~~~vvwl~~L~~~~g~~~~~ 50 (405)
T COG4393 5 FVSFLQSVLPLALLLGITWN--KK-PIF-------KSFFVVWLGFLFGYFGFFIAA 50 (405)
T ss_pred HHHHHHHHHHHHHHHcCCcc--cc-cch-------hHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999888875443 22 222 345677788777777755433
No 38
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=21.17 E-value=4.1e+02 Score=26.02 Aligned_cols=38 Identities=21% Similarity=0.360 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCcCcc-hHHHHHHHHHHHHH
Q 007418 44 RFVAIFAVPLLSFHFISTNDPYAM-NFRFIAADTLQKII 81 (604)
Q Consensus 44 rFVf~VALPaLLF~~Ia~~d~~~l-n~~fI~a~aL~~lI 81 (604)
|++..+++=+++|+.+.+.++... +.++.....++.++
T Consensus 3 r~liL~~~~~l~~~l~~sG~i~~YI~P~~~~~~~~a~i~ 41 (182)
T PF09323_consen 3 RFLILLGFGILLFYLILSGKILLYIHPRYIPLLYFAAIL 41 (182)
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHhCccHHHHHHHHHHH
Confidence 567778888888888777766543 55555444333333
No 39
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=20.84 E-value=78 Score=31.73 Aligned_cols=28 Identities=18% Similarity=0.032 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcCCcCcc
Q 007418 39 CSGINRFVAIFAVPLLSFHFISTNDPYAM 67 (604)
Q Consensus 39 ~s~LNrFVf~VALPaLLF~~Ia~~d~~~l 67 (604)
.+.|+- +.-+++|+-++.+++..+...+
T Consensus 234 m~~LT~-~t~iflPlt~i~g~fGMN~~~~ 261 (292)
T PF01544_consen 234 MKVLTI-VTAIFLPLTFITGIFGMNFKGM 261 (292)
T ss_dssp HHHHHH-HHHHHHHHHHHTTSTTS-SS--
T ss_pred HHHHHH-HHHHHHHHHHHHHHhhCCccCC
Confidence 333433 4445599999999998887744
No 40
>PF04235 DUF418: Protein of unknown function (DUF418); InterPro: IPR007349 Tihs is a probable integral membrane protein. It is usually found associated with (IPR007299 from INTERPRO).
Probab=20.81 E-value=7.1e+02 Score=23.41 Aligned_cols=60 Identities=15% Similarity=0.161 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCcCcchHHHHHHHHHHHHH-HHHHHHHHHHHhhCCCcccc
Q 007418 42 INRFVAIFAVPLLSFHFISTNDPYAMNFRFIAADTLQKII-MLFVLGIWTNFTKNGSLEWM 101 (604)
Q Consensus 42 LNrFVf~VALPaLLF~~Ia~~d~~~ln~~fI~a~aL~~lI-v~lIL~l~~rf~k~~~ldw~ 101 (604)
++..+....+=.++|....-.-..++.......++++..+ ..++..+|.+.+++++.||.
T Consensus 95 LT~Yi~qsii~~~lf~~~~l~l~~~~~~~~~~~~~~~i~~~q~~~s~~W~~~f~~GPlE~l 155 (163)
T PF04235_consen 95 LTNYILQSIIGTLLFYGYGLGLFGHLSPAQSLLIALGIWVVQLLFSYLWLRRFRRGPLEWL 155 (163)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcHHHH
Confidence 4455555555555554332222223333333333332222 22335667787888888853
No 41
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=20.36 E-value=8.2e+02 Score=27.00 Aligned_cols=40 Identities=18% Similarity=0.295 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHhcCcCChhhhhHHHHHHHHHHHHHHHHH
Q 007418 16 PLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFH 57 (604)
Q Consensus 16 PLFlLIaLGYls~R~~gIft~e~~s~LNrFVf~VALPaLLF~ 57 (604)
|..+..++|.+++.. | -|=+.-+.+.+++-.+.+=+.=|+
T Consensus 1 P~vLFF~LG~~A~~~-k-SdL~iP~~i~k~lsiyLLlaIGlk 40 (327)
T PF05982_consen 1 PVVLFFILGIIAALL-K-SDLEIPEAIYKFLSIYLLLAIGLK 40 (327)
T ss_pred CchHHHHHHHHHHHH-c-CCCcCChhHHHHHHHHHHHHHhcc
Confidence 556677788888776 3 244566778888888877777776
Done!