Query 007418
Match_columns 604
No_of_seqs 219 out of 1194
Neff 4.2
Searched_HMMs 29240
Date Tue Mar 26 01:19:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007418.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007418hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zux_A Transporter, ASBTNM; tr 90.5 1.6 5.4E-05 45.0 11.2 36 108-144 266-303 (332)
2 4ev6_A Magnesium transport pro 26.7 3.5E+02 0.012 27.3 10.5 24 44-67 283-306 (339)
3 2iub_A CORA, divalent cation t 25.9 2E+02 0.0067 29.4 8.5 24 44-67 307-330 (363)
4 3s0x_A Peptidase A24B, FLAK do 18.3 7E+02 0.024 24.6 11.2 27 130-156 120-146 (237)
5 3rhw_A Avermectin-sensitive gl 15.6 3.9E+02 0.013 26.9 8.0 47 7-58 214-261 (347)
6 2gsm_B Cytochrome C oxidase su 14.8 1.9E+02 0.0066 28.9 5.4 22 9-30 37-58 (262)
7 3zux_A Transporter, ASBTNM; tr 13.7 9.7E+02 0.033 24.1 10.8 35 47-81 45-84 (332)
8 2lat_A Dolichyl-diphosphooligo 12.5 2.4E+02 0.008 20.8 3.8 25 1-25 1-25 (37)
9 3hb3_B Cytochrome C oxidase su 10.0 3.2E+02 0.011 28.0 5.3 25 6-30 65-89 (298)
10 1nrp_R Receptor based peptide 8.4 94 0.0032 20.9 0.4 7 508-514 7-13 (26)
No 1
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=90.52 E-value=1.6 Score=44.96 Aligned_cols=36 Identities=14% Similarity=0.035 Sum_probs=24.7
Q ss_pred EeecchhhhHHHHHHHHhCC--CchhHHHHHHHHHHHHH
Q 007418 108 STLPNTLVMGIPLLIAMYGE--YSGSLMVQVVVLQCIIW 144 (604)
Q Consensus 108 SsfpNTgfMGIPLL~ALyGe--eal~lav~ivVlq~II~ 144 (604)
++.-|+ -+|+++....||+ ......+++.++|.+..
T Consensus 266 ~G~qNs-~lai~lA~~~F~~~p~~alp~~iy~~~q~i~~ 303 (332)
T 3zux_A 266 VGMQNS-GLAAALAAAHFAAAPVVAVPGALFSVWHNISG 303 (332)
T ss_dssp HHCCCH-HHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHH
T ss_pred hhhccH-HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence 455787 5999999999963 33345556666666554
No 2
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=26.68 E-value=3.5e+02 Score=27.26 Aligned_cols=24 Identities=8% Similarity=-0.131 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCcCcc
Q 007418 44 RFVAIFAVPLLSFHFISTNDPYAM 67 (604)
Q Consensus 44 rFVf~VALPaLLF~~Ia~~d~~~l 67 (604)
..+.-+++|+-++.+++..++..+
T Consensus 283 Tiit~IflP~T~IaGiyGMNf~~m 306 (339)
T 4ev6_A 283 TMVTTIFAVPMWITGIYGMNFSYL 306 (339)
T ss_dssp HHHHHHSSHHHHHHHHTTCCCSCC
T ss_pred HHHHHHHHHHHHHHhhccCcCCCC
Confidence 344457789999999999988744
No 3
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=25.87 E-value=2e+02 Score=29.44 Aligned_cols=24 Identities=21% Similarity=0.073 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCcCcc
Q 007418 44 RFVAIFAVPLLSFHFISTNDPYAM 67 (604)
Q Consensus 44 rFVf~VALPaLLF~~Ia~~d~~~l 67 (604)
..+.-+++|+-++.+++..|+..|
T Consensus 307 Tiit~IflP~T~IaGiyGMNf~~m 330 (363)
T 2iub_A 307 TIIATIFMPLTFIAGIYGMNFEYM 330 (363)
T ss_dssp HHHHHHHHHHHHHTTSCC------
T ss_pred HHHHHHHHHHHHHHhhhcccCCCC
Confidence 344557788888888988887644
No 4
>3s0x_A Peptidase A24B, FLAK domain protein; preflagellin peptidase, GXGD protease, aspartyl protease, intramembrane proteolysis; 3.60A {Methanococcus maripaludis}
Probab=18.26 E-value=7e+02 Score=24.62 Aligned_cols=27 Identities=7% Similarity=0.189 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007418 130 GSLMVQVVVLQCIIWYTLLLFLFEYRG 156 (604)
Q Consensus 130 l~lav~ivVlq~II~~TLgL~LlE~~~ 156 (604)
..+.++.+.+-..+.+++.+++-...+
T Consensus 120 f~~tvl~Nsvl~~i~~pl~~~~~Nl~~ 146 (237)
T 3s0x_A 120 FPIMVFINGIFFMVFLPFVILFRNILN 146 (237)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555555555567777777765443
No 5
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=15.64 E-value=3.9e+02 Score=26.88 Aligned_cols=47 Identities=9% Similarity=0.173 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcCChhhh-hHHHHHHHHHHHHHHHHHH
Q 007418 7 LYLVLTAVVPLYVAMILAYGSVRWWKIFSPDQC-SGINRFVAIFAVPLLSFHF 58 (604)
Q Consensus 7 M~~VLsAVLPLFlLIaLGYls~R~~gIft~e~~-s~LNrFVf~VALPaLLF~~ 58 (604)
.+.+++.++|.++++++.++.-.. +++.. ..+ .+.+.+.|-..+|..
T Consensus 214 ~~y~~~l~iP~~li~~ls~~sF~l----p~~~~~~Rv-~lgit~lLt~tv~~~ 261 (347)
T 3rhw_A 214 SFYLLQLYIPSCMLVIVSWVSFWF----DRTAIPARV-TLGVTTLLTMTAQSA 261 (347)
T ss_dssp HHHHHHTHHHHHHHHHHHHTTTTS----CTTCHHHHH-HHHHHHHHHHHHHHH
T ss_pred eEEEEEeehhHHHHHHHhheEEec----cCCCCcceE-EEEeehHHHHHHHHH
Confidence 567889999999999999887664 44432 222 234444444444443
No 6
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=14.76 E-value=1.9e+02 Score=28.88 Aligned_cols=22 Identities=27% Similarity=0.718 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 007418 9 LVLTAVVPLYVAMILAYGSVRW 30 (604)
Q Consensus 9 ~VLsAVLPLFlLIaLGYls~R~ 30 (604)
-++..++-++++.++.|.+.|.
T Consensus 37 ~~i~~~I~v~V~~ll~~~~~r~ 58 (262)
T 2gsm_B 37 LVIIAAITIFVTLLILYAVWRF 58 (262)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555666666554
No 7
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=13.74 E-value=9.7e+02 Score=24.14 Aligned_cols=35 Identities=9% Similarity=0.165 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhhcCCcCcc-----hHHHHHHHHHHHHH
Q 007418 47 AIFAVPLLSFHFISTNDPYAM-----NFRFIAADTLQKII 81 (604)
Q Consensus 47 f~VALPaLLF~~Ia~~d~~~l-----n~~fI~a~aL~~lI 81 (604)
..+++.+++|..-.+.+.+++ +++.++...+...+
T Consensus 45 i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~v 84 (332)
T 3zux_A 45 IPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFA 84 (332)
T ss_dssp HHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHH
Confidence 346788888887777777765 55555444443333
No 8
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=12.49 E-value=2.4e+02 Score=20.80 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=15.8
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHH
Q 007418 1 MITWKDLYLVLTAVVPLYVAMILAY 25 (604)
Q Consensus 1 Mi~~~dM~~VLsAVLPLFlLIaLGY 25 (604)
|||-.+++.+-+.+.-...++++.|
T Consensus 1 MIsD~qL~~lan~lG~~~~~LIVlY 25 (37)
T 2lat_A 1 MITDVQLAIFANMLGVSLFLLVVLY 25 (37)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999998886665444444444444
No 9
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Probab=10.03 E-value=3.2e+02 Score=27.99 Aligned_cols=25 Identities=24% Similarity=0.507 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 007418 6 DLYLVLTAVVPLYVAMILAYGSVRW 30 (604)
Q Consensus 6 dM~~VLsAVLPLFlLIaLGYls~R~ 30 (604)
|..-++..++-+++..++-|.+.|.
T Consensus 65 ~~~~~i~~~I~v~V~~l~~~~~~r~ 89 (298)
T 3hb3_B 65 HFVLYIITAVTIFVCLLLLICIVRF 89 (298)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444555555566666544
No 10
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=8.44 E-value=94 Score=20.87 Aligned_cols=7 Identities=71% Similarity=1.270 Sum_probs=5.6
Q ss_pred HhhCCCc
Q 007418 508 LIRNPNT 514 (604)
Q Consensus 508 LirNPNt 514 (604)
|.||||-
T Consensus 7 llrnpnd 13 (26)
T 1nrp_R 7 LLRNPND 13 (26)
T ss_pred hhcCCCc
Confidence 7899984
Done!