Query 007418
Match_columns 604
No_of_seqs 219 out of 1194
Neff 4.2
Searched_HMMs 13730
Date Tue Mar 26 01:19:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007418.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007418hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2iuba2 f.17.3.1 (A:286-349) M 17.6 33 0.0024 25.2 2.4 24 44-67 10-33 (64)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 13.6 3.9E+02 0.029 23.3 11.9 21 10-30 292-312 (447)
3 d2e74h1 f.23.27.1 (H:3-29) Pet 11.1 42 0.0031 21.2 1.1 17 519-535 4-20 (27)
4 d1pv7a_ f.38.1.2 (A:) Lactose 10.8 4.3E+02 0.031 22.1 10.8 17 14-30 270-286 (417)
5 d1oedc_ f.36.1.1 (C:) Acetylch 8.6 5.4E+02 0.039 21.8 9.6 24 7-30 2-25 (260)
6 d2e74f1 f.23.25.1 (F:1-32) Pet 7.0 2.2E+02 0.016 18.4 3.4 22 9-30 4-25 (32)
7 d1iwga8 f.35.1.1 (A:513-566,A: 6.9 6.5E+02 0.048 21.4 8.2 21 42-62 27-47 (222)
8 d3dtub2 f.17.2.1 (B:30-129) Ba 6.4 3.7E+02 0.027 20.6 5.5 21 10-30 34-54 (100)
9 d1oede_ f.36.1.1 (E:) Acetylch 5.9 89 0.0065 27.5 1.4 23 8-30 3-25 (260)
10 d1dxxa1 a.40.1.1 (A:9-119) Dys 5.3 1.1E+02 0.008 24.0 1.4 11 517-527 98-108 (111)
No 1
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=17.59 E-value=33 Score=25.18 Aligned_cols=24 Identities=21% Similarity=0.073 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCcCcc
Q 007418 44 RFVAIFAVPLLSFHFISTNDPYAM 67 (604)
Q Consensus 44 rFVf~VALPaLLF~~Ia~~d~~~l 67 (604)
..+.-+.+|+-+..++...+...+
T Consensus 10 T~it~iflP~t~i~gifGMN~~~~ 33 (64)
T d2iuba2 10 TIIATIFMPLTFIAGIYGMNFEYM 33 (64)
T ss_dssp HHHHHHHHHHHHHTTSCC------
T ss_pred HHHHHHHHHHHHHHhhhccCCCCC
Confidence 445568889998888888776533
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=13.59 E-value=3.9e+02 Score=23.33 Aligned_cols=21 Identities=10% Similarity=0.021 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 007418 10 VLTAVVPLYVAMILAYGSVRW 30 (604)
Q Consensus 10 VLsAVLPLFlLIaLGYls~R~ 30 (604)
.+..+.-++..++.|++..|.
T Consensus 292 ~~~~~~~~~~~~~~g~~~~~~ 312 (447)
T d1pw4a_ 292 FLYEYAGIPGTLLCGWMSDKV 312 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred hcchhhhhhhhhhhhhhhhhc
Confidence 344455566667777777775
No 3
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=11.06 E-value=42 Score=21.20 Aligned_cols=17 Identities=35% Similarity=0.806 Sum_probs=12.4
Q ss_pred hhHHHHHHhhhhccchh
Q 007418 519 IGLVWSLIAFRWHVSMP 535 (604)
Q Consensus 519 iGl~Wslisfrw~i~mP 535 (604)
+|-+=-|+-|.|.|.|-
T Consensus 4 lgwv~llvvftwsiamv 20 (27)
T d2e74h1 4 LGWVALLVVFTWSIAMV 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhHhHHHHHhhheeeeE
Confidence 45555688899988873
No 4
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=10.79 E-value=4.3e+02 Score=22.15 Aligned_cols=17 Identities=6% Similarity=-0.035 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHh
Q 007418 14 VVPLYVAMILAYGSVRW 30 (604)
Q Consensus 14 VLPLFlLIaLGYls~R~ 30 (604)
+..+......|++..|.
T Consensus 270 ~~~~~~~~~~~~l~~r~ 286 (417)
T d1pv7a_ 270 LLNASIMFFAPLIINRI 286 (417)
T ss_dssp HHHHHHHTTHHHHHHHH
T ss_pred cccccchhhhhhhhccc
Confidence 33344444445555554
No 5
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=8.59 E-value=5.4e+02 Score=21.76 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 007418 7 LYLVLTAVVPLYVAMILAYGSVRW 30 (604)
Q Consensus 7 M~~VLsAVLPLFlLIaLGYls~R~ 30 (604)
+|.+++.++|.+++.++-++.-..
T Consensus 2 l~y~~n~~~P~~~~~~l~~~~f~l 25 (260)
T d1oedc_ 2 LFYVINFITPCVLISFLASLAFYL 25 (260)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEhHHHHHHHHHHHHHHHeee
Confidence 477899999999998888777654
No 6
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=7.02 E-value=2.2e+02 Score=18.39 Aligned_cols=22 Identities=14% Similarity=0.151 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 007418 9 LVLTAVVPLYVAMILAYGSVRW 30 (604)
Q Consensus 9 ~VLsAVLPLFlLIaLGYls~R~ 30 (604)
.++++-+--|.+|.+||.++-.
T Consensus 4 eil~aa~lsfglifvgwglgal 25 (32)
T d2e74f1 4 EMLYAALLSFGLIFVGWGLGVL 25 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHhHHHHH
Confidence 3566666678888888877653
No 7
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=6.92 E-value=6.5e+02 Score=21.43 Aligned_cols=21 Identities=5% Similarity=-0.151 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcC
Q 007418 42 INRFVAIFAVPLLSFHFISTN 62 (604)
Q Consensus 42 LNrFVf~VALPaLLF~~Ia~~ 62 (604)
...++.|..+|.-+-....+.
T Consensus 27 ~r~~~~y~~l~~g~~~~f~~l 47 (222)
T d1iwga8 27 GRYLVLYLIIVVGMAYLFVRL 47 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhhhheeeeccC
Confidence 445677888888765544443
No 8
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=6.44 E-value=3.7e+02 Score=20.57 Aligned_cols=21 Identities=24% Similarity=0.689 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 007418 10 VLTAVVPLYVAMILAYGSVRW 30 (604)
Q Consensus 10 VLsAVLPLFlLIaLGYls~R~ 30 (604)
.+..++-+++.-++-|...|+
T Consensus 34 ~i~~~I~~~V~~~l~~~~~~~ 54 (100)
T d3dtub2 34 VIIAAITIFVTLLILYAVWRF 54 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhh
Confidence 344444445555566666665
No 9
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=5.91 E-value=89 Score=27.52 Aligned_cols=23 Identities=9% Similarity=0.137 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 007418 8 YLVLTAVVPLYVAMILAYGSVRW 30 (604)
Q Consensus 8 ~~VLsAVLPLFlLIaLGYls~R~ 30 (604)
|.+++.++|.+++.++-++.-..
T Consensus 3 yY~~~lilP~~li~~ls~~~F~l 25 (260)
T d1oede_ 3 FYIINIIAPCVLISSLVVLVYFL 25 (260)
T ss_dssp SHHHHHHTHHHHHHHHHHHHHHH
T ss_pred EEEEhHHHHHHHHHHHHHHheEe
Confidence 55777888888888777776654
No 10
>d1dxxa1 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.26 E-value=1.1e+02 Score=24.02 Aligned_cols=11 Identities=36% Similarity=1.023 Sum_probs=8.6
Q ss_pred hhhhHHHHHHh
Q 007418 517 SLIGLVWSLIA 527 (604)
Q Consensus 517 SliGl~Wslis 527 (604)
..+||+|+|+.
T Consensus 98 ~iL~llw~l~~ 108 (111)
T d1dxxa1 98 LTLGLIWNIIL 108 (111)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 47899998874
Done!