Query 007420
Match_columns 604
No_of_seqs 323 out of 1617
Neff 4.7
Searched_HMMs 46136
Date Thu Mar 28 23:21:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007420.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007420hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03547 Mem_trans: Membrane t 100.0 1.3E-45 2.9E-50 385.9 34.1 376 10-599 2-385 (385)
2 TIGR00946 2a69 he Auxin Efflux 100.0 2.4E-43 5.2E-48 364.1 32.9 312 1-603 1-321 (321)
3 PRK09903 putative transporter 100.0 4.5E-43 9.7E-48 362.2 34.3 301 9-602 4-310 (314)
4 COG0679 Predicted permeases [G 100.0 2.6E-41 5.6E-46 350.0 34.7 303 7-601 2-307 (311)
5 KOG2722 Predicted membrane pro 99.7 6.6E-17 1.4E-21 170.1 17.2 150 448-598 238-400 (408)
6 TIGR00841 bass bile acid trans 99.0 3.4E-09 7.5E-14 109.6 13.1 105 495-599 12-117 (286)
7 TIGR00832 acr3 arsenical-resis 98.6 1.6E-06 3.4E-11 91.9 18.0 137 452-595 4-149 (328)
8 COG0385 Predicted Na+-dependen 98.6 1.3E-06 2.8E-11 92.3 15.4 129 460-597 16-145 (319)
9 PF01758 SBF: Sodium Bile acid 98.5 2.2E-06 4.8E-11 83.2 13.8 106 496-601 3-110 (187)
10 PF13593 DUF4137: SBF-like CPA 97.8 0.00029 6.2E-09 74.5 13.7 135 458-597 1-141 (313)
11 COG0798 ACR3 Arsenite efflux p 97.3 0.0053 1.2E-07 65.7 14.2 146 449-603 9-166 (342)
12 PF05684 DUF819: Protein of un 96.9 0.67 1.5E-05 50.7 26.8 136 11-154 22-167 (378)
13 PF04172 LrgB: LrgB-like famil 95.6 0.54 1.2E-05 47.9 15.8 140 450-598 13-154 (215)
14 PRK10711 hypothetical protein; 95.5 0.57 1.2E-05 48.3 15.8 139 453-599 27-166 (231)
15 PRK04288 antiholin-like protei 95.3 1.2 2.6E-05 46.0 17.2 140 453-599 32-171 (232)
16 TIGR00841 bass bile acid trans 95.1 0.35 7.5E-06 50.6 12.9 130 14-151 140-275 (286)
17 TIGR00659 conserved hypothetic 94.9 1.3 2.8E-05 45.5 16.1 135 453-594 26-160 (226)
18 COG1346 LrgB Putative effector 94.8 0.84 1.8E-05 47.0 14.5 131 451-591 27-160 (230)
19 PF03601 Cons_hypoth698: Conse 94.8 0.57 1.2E-05 49.9 13.9 142 456-603 25-170 (305)
20 COG3329 Predicted permease [Ge 92.6 11 0.00025 40.6 18.4 62 447-511 206-267 (372)
21 COG2855 Predicted membrane pro 92.2 1.2 2.6E-05 48.1 10.9 138 459-603 39-179 (334)
22 PRK03659 glutathione-regulated 91.9 5.8 0.00012 45.9 16.8 133 457-597 237-371 (601)
23 PRK03562 glutathione-regulated 91.4 7.2 0.00016 45.3 16.9 132 458-597 241-374 (621)
24 PF03812 KdgT: 2-keto-3-deoxyg 90.0 3.9 8.5E-05 44.0 12.1 88 493-582 47-142 (314)
25 TIGR00783 ccs citrate carrier 89.3 0.94 2E-05 49.2 7.0 87 17-106 207-301 (347)
26 TIGR00698 conserved hypothetic 88.9 4.5 9.7E-05 43.9 11.7 90 457-551 31-121 (335)
27 PRK10669 putative cation:proto 88.2 18 0.00039 41.2 16.6 134 458-599 249-384 (558)
28 PF13593 DUF4137: SBF-like CPA 88.1 24 0.00052 37.7 16.5 112 10-128 164-283 (313)
29 TIGR00932 2a37 transporter, mo 87.5 36 0.00078 34.8 17.1 93 448-549 7-102 (273)
30 COG5505 Predicted integral mem 86.2 56 0.0012 35.7 18.2 115 460-591 250-367 (384)
31 PRK12460 2-keto-3-deoxyglucona 85.0 2.5 5.4E-05 45.4 7.1 87 495-583 49-138 (312)
32 KOG2718 Na+-bile acid cotransp 82.2 1.5 3.2E-05 48.1 4.2 107 496-602 118-226 (371)
33 COG0475 KefB Kef-type K+ trans 81.9 29 0.00062 38.2 13.9 129 454-589 26-158 (397)
34 PRK12460 2-keto-3-deoxyglucona 81.7 11 0.00024 40.6 10.3 81 460-550 169-249 (312)
35 TIGR00844 c_cpa1 na(+)/h(+) an 81.2 42 0.0009 40.7 15.7 88 454-547 35-129 (810)
36 TIGR00793 kdgT 2-keto-3-deoxyg 81.0 3.7 8E-05 44.1 6.4 87 495-583 49-143 (314)
37 PRK03562 glutathione-regulated 78.2 56 0.0012 38.1 15.4 116 449-572 21-138 (621)
38 PRK03659 glutathione-regulated 78.0 68 0.0015 37.3 15.9 114 451-572 23-138 (601)
39 PRK05326 potassium/proton anti 77.3 42 0.00091 38.4 13.9 93 449-549 22-118 (562)
40 PRK10669 putative cation:proto 75.2 92 0.002 35.6 15.9 115 449-571 22-138 (558)
41 TIGR00832 acr3 arsenical-resis 72.8 43 0.00093 36.0 11.8 116 483-598 205-324 (328)
42 COG0385 Predicted Na+-dependen 72.1 90 0.002 34.0 13.9 126 6-143 162-296 (319)
43 COG0798 ACR3 Arsenite efflux p 72.1 45 0.00098 36.5 11.7 147 2-154 172-328 (342)
44 TIGR03082 Gneg_AbrB_dup membra 70.8 1E+02 0.0022 29.6 15.9 121 454-586 15-140 (156)
45 PLN03159 cation/H(+) antiporte 68.1 1.5E+02 0.0033 36.1 16.1 84 456-544 65-157 (832)
46 PF03390 2HCT: 2-hydroxycarbox 65.2 20 0.00043 40.1 7.5 97 15-114 271-376 (414)
47 PF05982 DUF897: Domain of unk 59.8 2.7E+02 0.0059 30.6 22.2 104 448-559 167-275 (327)
48 PRK15060 L-dehydroascorbate tr 59.7 3E+02 0.0065 31.1 16.6 123 447-585 263-397 (425)
49 TIGR00844 c_cpa1 na(+)/h(+) an 59.7 1E+02 0.0022 37.5 12.4 110 458-571 265-379 (810)
50 KOG4821 Predicted Na+-dependen 58.3 20 0.00043 37.2 5.5 93 500-595 63-160 (287)
51 PRK05326 potassium/proton anti 54.1 1.6E+02 0.0035 33.8 12.6 107 457-571 244-351 (562)
52 PF03547 Mem_trans: Membrane t 50.3 2.6E+02 0.0056 29.8 12.7 98 459-562 8-105 (385)
53 TIGR00783 ccs citrate carrier 47.4 1.8E+02 0.004 32.0 11.0 102 32-135 7-121 (347)
54 PF05684 DUF819: Protein of un 44.5 4.8E+02 0.01 28.9 15.8 131 457-593 25-159 (378)
55 PF05145 AmoA: Putative ammoni 43.6 4.5E+02 0.0096 28.3 16.7 121 455-587 173-298 (318)
56 PRK05274 2-keto-3-deoxyglucona 43.6 64 0.0014 35.0 6.9 118 462-591 178-300 (326)
57 TIGR00819 ydaH p-Aminobenzoyl- 37.2 7.3E+02 0.016 28.9 14.7 47 531-578 413-468 (513)
58 PLN03159 cation/H(+) antiporte 35.9 1.2E+02 0.0027 36.8 8.3 133 16-153 295-437 (832)
59 PRK03818 putative transporter; 35.6 7.7E+02 0.017 28.7 14.6 75 478-559 51-129 (552)
60 COG3493 CitS Na+/citrate sympo 35.5 1.2E+02 0.0025 34.2 7.3 88 16-106 292-387 (438)
61 TIGR00946 2a69 he Auxin Efflux 33.7 5.9E+02 0.013 26.8 15.3 120 450-577 5-128 (321)
62 TIGR00400 mgtE Mg2+ transporte 33.4 5.7E+02 0.012 28.7 12.5 34 555-589 397-430 (449)
63 TIGR00831 a_cpa1 Na+/H+ antipo 32.9 1.2E+02 0.0027 34.6 7.4 71 17-90 25-98 (525)
64 COG0475 KefB Kef-type K+ trans 32.9 7.1E+02 0.015 27.5 15.8 84 457-548 243-328 (397)
65 COG3180 AbrB Putative ammonia 31.6 7.6E+02 0.017 27.5 16.4 127 448-586 199-330 (352)
66 TIGR01299 synapt_SV2 synaptic 31.6 6.9E+02 0.015 30.2 13.4 10 308-317 57-66 (742)
67 TIGR02123 TRAP_fused TRAP tran 30.6 9.8E+02 0.021 28.4 16.1 40 542-581 464-509 (613)
68 KOG2532 Permease of the major 29.8 3.9E+02 0.0085 30.2 10.6 39 452-490 251-290 (466)
69 TIGR03109 exosortase_1 exosort 28.6 2.4E+02 0.0052 29.8 8.1 90 478-567 127-219 (267)
70 COG1968 BacA Undecaprenyl pyro 28.6 7.6E+02 0.016 26.5 12.4 107 483-591 106-229 (270)
71 TIGR00840 b_cpa1 sodium/hydrog 28.4 2E+02 0.0044 33.4 8.2 114 458-574 260-379 (559)
72 PF03616 Glt_symporter: Sodium 27.5 2.1E+02 0.0044 31.5 7.6 57 45-104 279-339 (368)
73 TIGR03802 Asp_Ala_antiprt aspa 27.2 6.5E+02 0.014 29.3 11.9 78 465-554 43-122 (562)
74 KOG3626 Organic anion transpor 27.0 2.1E+02 0.0045 34.6 8.1 28 446-473 379-406 (735)
75 TIGR00698 conserved hypothetic 26.0 4.4E+02 0.0096 28.8 9.8 61 459-525 252-313 (335)
76 TIGR00831 a_cpa1 Na+/H+ antipo 25.6 1.1E+03 0.023 27.2 15.9 73 456-537 20-93 (525)
77 PF07330 DUF1467: Protein of u 24.4 2.3E+02 0.0049 25.3 5.9 10 420-429 27-36 (85)
78 PF05145 AmoA: Putative ammoni 23.9 9.2E+02 0.02 25.9 14.5 55 525-583 60-115 (318)
79 PF03956 DUF340: Membrane prot 23.4 3.5E+02 0.0075 27.2 7.8 44 461-512 2-45 (191)
80 PF04235 DUF418: Protein of un 23.3 6.3E+02 0.014 23.8 9.5 65 36-100 89-154 (163)
81 PF12273 RCR: Chitin synthesis 22.9 80 0.0017 29.3 3.0 23 69-91 2-24 (130)
82 PF03806 ABG_transport: AbgT p 22.0 1.3E+03 0.028 26.9 12.8 41 539-579 413-462 (502)
83 PF11992 DUF3488: Domain of un 21.3 1E+03 0.022 25.5 13.1 21 582-602 157-177 (325)
84 PF03601 Cons_hypoth698: Conse 20.3 3.4E+02 0.0073 29.2 7.4 119 14-139 26-154 (305)
85 PRK12585 putative monovalent c 20.2 2.6E+02 0.0057 28.6 6.1 63 479-542 28-90 (197)
No 1
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=100.00 E-value=1.3e-45 Score=385.92 Aligned_cols=376 Identities=31% Similarity=0.473 Sum_probs=303.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccccChhHHHHHHHHHHHHHhHHHHHHHhhcCC-CCCc-cHHHHHHHH-HHHHHHHHHH
Q 007420 10 VMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISSND-PYKM-NLRFIAADT-LQKIIVLVVL 86 (604)
Q Consensus 10 ILsiilPIFlLI~LGyla~R~rg~~s~~~~~~LnrFVf~~ALPALLF~~IA~~d-l~~l-~~~fl~ay~-Lg~livfll~ 86 (604)
+++.++|+|+++++||+++|+ |++++++.+.+|++|+++++|||+|..+++.+ .+++ ++.++..+. +..++.++++
T Consensus 2 v~~~i~~i~~ii~~G~~~~~~-~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (385)
T PF03547_consen 2 VFSAILPIFLIILLGYLLGRF-GILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLSLWFIPVFAFIIFILGLLLG 80 (385)
T ss_pred cHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999995 99999999999999999999999999999975 4445 665555444 3444445555
Q ss_pred HHHHHHhhcCCcccceeeeee-ccCCccccchHHHHhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccC
Q 007420 87 AIWSKLSKRGCLEWTITLFSV-STLPNTLVMGIPLLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARLLISEQF 165 (604)
Q Consensus 87 ~llar~~~r~~~~~~aaV~gl-asfsNtgfIGiPIl~alfG~~a~~~valiv~v~~lIl~pl~lvLmE~~~~~~~~~~~~ 165 (604)
+++.|+++. ++++ .+++.+ ++|+|++++|+|++.++||+++..++.++..++++++++++..++|.++++....++.
T Consensus 81 ~~~~~~~~~-~~~~-~~~~~~~~~~~N~~~lglpi~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~ 158 (385)
T PF03547_consen 81 FLLSRLFRL-PKEW-RGVFVLAASFGNTGFLGLPILQALFGERGVAYAIIFDVVNNIILWSLGYFLLESRSEKEDKSEEE 158 (385)
T ss_pred HHHHHhcCC-Cccc-ceEEEecccCCcchhhHHHHHHHHhcchhhhhehHHHHhhHHHHHHHHHHhhccccccccccccc
Confidence 555554444 3333 466777 7999999999999999999999999999999999999999999999987776556666
Q ss_pred CCCcCccceeeccccccccCCCCCccchhhhccCCceEEEEeecCCCcchhhhcccCCCCCCCCCCCCCCccccccccCC
Q 007420 166 PDTAGSIVSIHVDSDIMSLDGRQPLETDAEIKEDGKLHVTVRKSNASRSDIFSRRSQGLSSTTPRPSNLTNAEIYSLQSS 245 (604)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (604)
+++.++......|++.+..+++++.++|.++++|+..|.+++..+.++.+..+ .+|++++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~------------ 218 (385)
T PF03547_consen 159 PSSAESIDSEQEDSDEMSLDGSSPSSTEEEIDEDGSPSSTPSQSSASAPSSVS--------TSPSPSN------------ 218 (385)
T ss_pred ccccccccccccCCccccCCcccccccccccccCCcccccccccccccchhhc--------cCCcccc------------
Confidence 66666777888888999999999999999999999888776655554433331 0000000
Q ss_pred CCCCCCCCCCCcchhhhhhcCCCCCCCCCccccccccCCCCCCCCCCCchhhhhhccccCCCCCCCCCCCCCCCCCCCcc
Q 007420 246 RNPTPRGSSFNHADFYSMMAGGRSSNFGATDVYGLSATSRGPTPRPSNYEDEANNANKSRFHHYPAPNPGMFSPTNNNTR 325 (604)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (604)
T Consensus 219 -------------------------------------------------------------------------------- 218 (385)
T PF03547_consen 219 -------------------------------------------------------------------------------- 218 (385)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccchhhhhhcccccccCCCCCCCCCCcccccceeccCCCCCCcccccCCCCCCCcchhhhhccCCCCCCCCCCCCCccc
Q 007420 326 VNASANKKAINGQAQQKGEDGAGAGAGARDLHMFVWSSSASPVSDVFGGHDYNNNDHKEVRLAVSPQGGKGEGGGGHEEY 405 (604)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (604)
.+ . +++
T Consensus 219 ------------------------------------------------~~-------~------------------~~~- 224 (385)
T PF03547_consen 219 ------------------------------------------------ST-------G------------------AEQ- 224 (385)
T ss_pred ------------------------------------------------cc-------h------------------hhh-
Confidence 00 0 000
Q ss_pred ccccccccCccccCcCCCCCCCcCCCCCCCCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhcCCCCCc---
Q 007420 406 MEREDFSFGNRRGLESNNNEGEKVGDEKPKAMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLVSFRWNVQMP--- 482 (604)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vlkklLkNPiIIAiILGLilsll~~~~gI~LP--- 482 (604)
+ .+.+.+...++.+++.++||+++++++|+++++. ++..|
T Consensus 225 ---------------------------~------~~~~~~~~~~~~~~~~~~nP~~~a~~lgli~~~~----~~~~~~~~ 267 (385)
T PF03547_consen 225 ---------------------------K------SSNSTRKKLKKSILKLFKNPPLIAIILGLIIGLI----PPLRPLFF 267 (385)
T ss_pred ---------------------------h------hhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH----HHhcccch
Confidence 0 0013445667888899999999999999999999 66555
Q ss_pred -HHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhccc
Q 007420 483 -AIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMAAASIAVGLRGVLLHVAIVQAALP 561 (604)
Q Consensus 483 -~~L~~~L~~LG~aaiPLALf~IG~sLa~~~~~~~~~~k~vl~iv~iKLIV~PLLa~ll~~lLgLd~~~~~VlVL~AAmP 561 (604)
+++.++++++|++++|++||++|+.|+..+......++.....+++|++++|++++++++++++++....++++++++|
T Consensus 268 ~~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i~~~~~~~~~l~~~~~~~~~~~~~~P 347 (385)
T PF03547_consen 268 PSFITDSLSYLGAAAVPLALFVLGASLARGPRKSALGWKPSIIAVLVRLIILPLIGIGIVFLLGLDGDMARVLILQAAMP 347 (385)
T ss_pred HhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHhccCC
Confidence 9999999999999999999999999998653323455666678999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHH
Q 007420 562 QGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYY 599 (604)
Q Consensus 562 tAv~s~IlA~~YG~d~elAAs~VllSTLLSLpl~i~l~ 599 (604)
+|++.+++|++||.+++.+++++++||+++++++.+|+
T Consensus 348 ~a~~~~~~a~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 385 (385)
T PF03547_consen 348 TAINSFVIASLYGLDEEEASSIVFWSTLLSIPTLPLWI 385 (385)
T ss_pred chHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999988777663
No 2
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=100.00 E-value=2.4e-43 Score=364.15 Aligned_cols=312 Identities=38% Similarity=0.560 Sum_probs=251.1
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHhh-hhhccccChhHHHHHHHHHHHHHhHHHHHHHhhcCCCC--Cc-cHHHHHHHH
Q 007420 1 MITLADFYHVMTAMVPLYVAMILAYGS-VKWWKIFTPDQCSGINRFVALFAVPLLSFHFISSNDPY--KM-NLRFIAADT 76 (604)
Q Consensus 1 mi~~~~Ml~ILsiilPIFlLI~LGyla-~R~rg~~s~~~~~~LnrFVf~~ALPALLF~~IA~~dl~--~l-~~~fl~ay~ 76 (604)
||.|+ +++.++|+|++|++||++ +| +|++++++.+.+||+|+|+++||++|.++++.+.+ +. .+.++....
T Consensus 1 ~~~~~----~~~~ilpv~~ii~lG~~~~~r-~~~~~~~~~~~l~~~v~~i~lP~lif~~~~~~~~~~~~~~~~~~~~~~~ 75 (321)
T TIGR00946 1 MITYV----ILETVLPILVVILLGYILGKR-FGILDEEHASGINRFVINFALPLTIFHSISTTLADILQKSQSPVVLFLW 75 (321)
T ss_pred CccHH----HHHHHHHHHHHHHHHHHHHHH-hCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56664 677888999999999999 79 59999999999999999999999999999998885 34 677777777
Q ss_pred HHHHHHHHHHHHHHH-HhhcCCcccceeeeee-ccCCccccchHHHHhhhhccchhh---HHHHHHHHHHHHHHHHHHHH
Q 007420 77 LQKIIVLVVLAIWSK-LSKRGCLEWTITLFSV-STLPNTLVMGIPLLKGMYGEFSGS---LMVQIVVLQCIIWYTLMLFM 151 (604)
Q Consensus 77 Lg~livfll~~llar-~~~r~~~~~~aaV~gl-asfsNtgfIGiPIl~alfG~~a~~---~valiv~v~~lIl~pl~lvL 151 (604)
++.++.|+++++.+| ++++++.+ .+.+.+ ++++|++|+|+|++..+||+++.. +.......+.++.+.++..+
T Consensus 76 ~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~N~~~~GlPl~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (321)
T TIGR00946 76 GAFSGSYALIWLITKPLFKADYGK--LSGFLLVSALPNTAFIGYPLLLSLFGEEGAKILIAALFIDTGAVLMTIALGLFL 153 (321)
T ss_pred HHHHHHHHHHHHHHHHHHhcccch--hhHHHHHhhhccceeehHHHHHHHhcccchhhhHHHHHHHhccchhHHHHHHHH
Confidence 777777887777777 44443334 577777 799999999999999999999953 22222222222222222221
Q ss_pred HHHhcccccccccCCCCcCccceeeccccccccCCCCCccchhhhccCCceEEEEeecCCCcchhhhcccCCCCCCCCCC
Q 007420 152 FEYRGARLLISEQFPDTAGSIVSIHVDSDIMSLDGRQPLETDAEIKEDGKLHVTVRKSNASRSDIFSRRSQGLSSTTPRP 231 (604)
Q Consensus 152 mE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (604)
...
T Consensus 154 ~~~----------------------------------------------------------------------------- 156 (321)
T TIGR00946 154 VSE----------------------------------------------------------------------------- 156 (321)
T ss_pred hcc-----------------------------------------------------------------------------
Confidence 100
Q ss_pred CCCCccccccccCCCCCCCCCCCCCcchhhhhhcCCCCCCCCCccccccccCCCCCCCCCCCchhhhhhccccCCCCCCC
Q 007420 232 SNLTNAEIYSLQSSRNPTPRGSSFNHADFYSMMAGGRSSNFGATDVYGLSATSRGPTPRPSNYEDEANNANKSRFHHYPA 311 (604)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (604)
T Consensus 157 -------------------------------------------------------------------------------- 156 (321)
T TIGR00946 157 -------------------------------------------------------------------------------- 156 (321)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCcccccchhhhhhcccccccCCCCCCCCCCcccccceeccCCCCCCcccccCCCCCCCcchhhhhccCC
Q 007420 312 PNPGMFSPTNNNTRVNASANKKAINGQAQQKGEDGAGAGAGARDLHMFVWSSSASPVSDVFGGHDYNNNDHKEVRLAVSP 391 (604)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (604)
+ ++
T Consensus 157 ------------------------------~-------------------------------~~---------------- 159 (321)
T TIGR00946 157 ------------------------------D-------------------------------GA---------------- 159 (321)
T ss_pred ------------------------------c-------------------------------cc----------------
Confidence 0 00
Q ss_pred CCCCCCCCCCCcccccccccccCccccCcCCCCCCCcCCCCCCCCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHHHHH
Q 007420 392 QGGKGEGGGGHEEYMEREDFSFGNRRGLESNNNEGEKVGDEKPKAMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLVWS 471 (604)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vlkklLkNPiIIAiILGLils 471 (604)
+ ++ ++. . -.++.+++.+|++++||+++|+++|++++
T Consensus 160 --~-~~----------------------------------~~~-~------~~~~~~~~~~~~~~~nP~iia~i~Gl~~~ 195 (321)
T TIGR00946 160 --G-GE----------------------------------GSG-E------STRLMLIFVWKKLIKFPPLWAPLLSVILS 195 (321)
T ss_pred --c-cc----------------------------------ccc-h------hHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 0 00 000 0 01124567899999999999999999999
Q ss_pred HHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHH
Q 007420 472 LVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMAAASIAVGLRGVLL 551 (604)
Q Consensus 472 ll~~~~gI~LP~~L~~~L~~LG~aaiPLALf~IG~sLa~~~~~~~~~~k~vl~iv~iKLIV~PLLa~ll~~lLgLd~~~~ 551 (604)
.+ |+++|+++.++++++|++++|++|+++|+++...+ .+.+++..+..+++|++++|++++.+..++++++.+.
T Consensus 196 ~~----~i~lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~--~~~~~~~~~~~~~~klil~P~i~~~~~~~~~l~~~~~ 269 (321)
T TIGR00946 196 LV----GFKMPGLILKSISILSGATTPMALFSLGLALSPRK--IKLGVRDAILALIVRFLVQPAVMAGISKLIGLRGLEL 269 (321)
T ss_pred HH----hhcCcHHHHHHHHHHHHHHHHHHHHHHHHhhChhh--hccChHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHH
Confidence 99 99999999999999999999999999999998765 3456788899999999999999999999999999999
Q ss_pred HHHHHHhccchhhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007420 552 HVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYYILLG 603 (604)
Q Consensus 552 ~VlVL~AAmPtAv~s~IlA~~YG~d~elAAs~VllSTLLSLpl~i~l~lLL~ 603 (604)
++++++++||+|++++++|++||.|+|++++++++||++|++++..|.+++|
T Consensus 270 ~~~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sT~ls~~tlp~~~~l~~ 321 (321)
T TIGR00946 270 SVAILQAALPGGAVAAVLATEYEVDVELASTAVTLSTVLSLISLPLFIILLG 321 (321)
T ss_pred HHHHHHHcCChhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999888888887775
No 3
>PRK09903 putative transporter YfdV; Provisional
Probab=100.00 E-value=4.5e-43 Score=362.18 Aligned_cols=301 Identities=18% Similarity=0.289 Sum_probs=248.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccccChhHHHHHHHHHHHHHhHHHHHHHhhcCCCCCc--cHHHHHHHHHHHHHHHHHH
Q 007420 9 HVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISSNDPYKM--NLRFIAADTLQKIIVLVVL 86 (604)
Q Consensus 9 ~ILsiilPIFlLI~LGyla~R~rg~~s~~~~~~LnrFVf~~ALPALLF~~IA~~dl~~l--~~~fl~ay~Lg~livfll~ 86 (604)
.+++.++|+|++|++||+++| +|++++++.+.+||+|+|+++||++|.++++.+.++. ++.++....++.++.+++.
T Consensus 4 ~~~~~ilpif~ii~lG~~~~r-~~~~~~~~~~~ls~lv~~v~lPalif~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (314)
T PRK09903 4 FFIGDLLPIIVIMLLGYFSGR-RETFSEDQARAFNKLVLNYALPAALFVSITRANREMIFADTRLTLVSLVVIVGCFFFS 82 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 377899999999999999999 5999999999999999999999999999999887765 7778888888888888776
Q ss_pred HHHHHHh-hcCCcccceeeeee-ccCCccccchHHHHhhhhccchh--hHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 007420 87 AIWSKLS-KRGCLEWTITLFSV-STLPNTLVMGIPLLKGMYGEFSG--SLMVQIVVLQCIIWYTLMLFMFEYRGARLLIS 162 (604)
Q Consensus 87 ~llar~~-~r~~~~~~aaV~gl-asfsNtgfIGiPIl~alfG~~a~--~~valiv~v~~lIl~pl~lvLmE~~~~~~~~~ 162 (604)
++..+++ ++++.+ .+...+ ++++|++|+|+|++.++||+++. ...+.+..++++++++++..+++..+..
T Consensus 83 ~~~~~~~~~~~~~~--~~~~~~~~~~~N~gf~G~Pl~~~~~G~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~---- 156 (314)
T PRK09903 83 WFGCYKFFKRTHAE--AAVCALIAGSPTIGFLGFAVLDPIYGDSVSTGLVVAIISIIVNAITIPIGLYLLNPSSGA---- 156 (314)
T ss_pred HHHHHHHhcCCcch--hhHhhhhhcCCCcccccHHHHHHHcCchhhhhhHHHHHHHHHHHHHHHHHHHHHcccccc----
Confidence 6655433 332233 355666 78999999999999999999943 2344555667888888887765320000
Q ss_pred ccCCCCcCccceeeccccccccCCCCCccchhhhccCCceEEEEeecCCCcchhhhcccCCCCCCCCCCCCCCccccccc
Q 007420 163 EQFPDTAGSIVSIHVDSDIMSLDGRQPLETDAEIKEDGKLHVTVRKSNASRSDIFSRRSQGLSSTTPRPSNLTNAEIYSL 242 (604)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (604)
T Consensus 157 -------------------------------------------------------------------------------- 156 (314)
T PRK09903 157 -------------------------------------------------------------------------------- 156 (314)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCCCCCCcchhhhhhcCCCCCCCCCccccccccCCCCCCCCCCCchhhhhhccccCCCCCCCCCCCCCCCCCC
Q 007420 243 QSSRNPTPRGSSFNHADFYSMMAGGRSSNFGATDVYGLSATSRGPTPRPSNYEDEANNANKSRFHHYPAPNPGMFSPTNN 322 (604)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (604)
T Consensus 157 -------------------------------------------------------------------------------- 156 (314)
T PRK09903 157 -------------------------------------------------------------------------------- 156 (314)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccchhhhhhcccccccCCCCCCCCCCcccccceeccCCCCCCcccccCCCCCCCcchhhhhccCCCCCCCCCCCCC
Q 007420 323 NTRVNASANKKAINGQAQQKGEDGAGAGAGARDLHMFVWSSSASPVSDVFGGHDYNNNDHKEVRLAVSPQGGKGEGGGGH 402 (604)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (604)
+ + +
T Consensus 157 -------------------~-------------------------------~----------------------~----- 159 (314)
T PRK09903 157 -------------------D-------------------------------G----------------------K----- 159 (314)
T ss_pred -------------------c-------------------------------c----------------------c-----
Confidence 0 0 0
Q ss_pred cccccccccccCccccCcCCCCCCCcCCCCCCCCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhcCCCCCc
Q 007420 403 EEYMEREDFSFGNRRGLESNNNEGEKVGDEKPKAMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLVSFRWNVQMP 482 (604)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vlkklLkNPiIIAiILGLilsll~~~~gI~LP 482 (604)
+ ...++.+|+++|||+++|+++|++++++ |+++|
T Consensus 160 ------------------------------~------------~~~~~~l~~~~~nP~iia~~~gl~~~l~----~i~lP 193 (314)
T PRK09903 160 ------------------------------K------------NSNLSALISAAKEPVVWAPVLATILVLV----GVKIP 193 (314)
T ss_pred ------------------------------c------------chHHHHHHHHHhchHHHHHHHHHHHHHc----CCCCC
Confidence 0 0013567789999999999999999999 99999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhccch
Q 007420 483 AIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMAAASIAVGLRGVLLHVAIVQAALPQ 562 (604)
Q Consensus 483 ~~L~~~L~~LG~aaiPLALf~IG~sLa~~~~~~~~~~k~vl~iv~iKLIV~PLLa~ll~~lLgLd~~~~~VlVL~AAmPt 562 (604)
++++++++++|++++|++|+++|++|+..+. +..+..+..+++|++++|+++++++.++++++.+.++++++++||+
T Consensus 194 ~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~---~~~~~~~~~~~~Kli~~P~i~~~~~~~~~l~~~~~~v~vl~aa~P~ 270 (314)
T PRK09903 194 AAWDPTFNLIAKANSGVAVFAAGLTLAAHKF---EFSAEIAYNTFLKLILMPLALLLVGMACHLNSEHLQMMVLAGALPP 270 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---cccHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHcccH
Confidence 9999999999999999999999999998652 2335677889999999999999988889999999999999999999
Q ss_pred hhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHh
Q 007420 563 GIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYYILL 602 (604)
Q Consensus 563 Av~s~IlA~~YG~d~elAAs~VllSTLLSLpl~i~l~lLL 602 (604)
|++++++|++||.|+++++++|++||++|+.++..|.+++
T Consensus 271 a~~~~i~A~~y~~~~~~aa~~v~~sTlls~iTlpl~~~l~ 310 (314)
T PRK09903 271 AFSGIIIASRFNVYTRTGTASLAVSVLGFVVTAPLWIYVS 310 (314)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999966655555554
No 4
>COG0679 Predicted permeases [General function prediction only]
Probab=100.00 E-value=2.6e-41 Score=350.00 Aligned_cols=303 Identities=22% Similarity=0.471 Sum_probs=266.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccccChhHHHHHHHHHHHHHhHHHHHHHhhcCCCCCc-cHHHHHHHHHHHHHHHHH
Q 007420 7 FYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISSNDPYKM-NLRFIAADTLQKIIVLVV 85 (604)
Q Consensus 7 Ml~ILsiilPIFlLI~LGyla~R~rg~~s~~~~~~LnrFVf~~ALPALLF~~IA~~dl~~l-~~~fl~ay~Lg~livfll 85 (604)
|..++..++|+|++|++||+++|+ +.++++..+++|++|+|+++|||+|..+++++.+.. ++.++..+++++++++++
T Consensus 2 ~~~~~~~vlpi~lii~lGy~~~r~-~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (311)
T COG0679 2 MMIVFEVVLPIFLIILLGYLLKRF-GILDEEAARGLSRLVVYVALPALLFNSIATADLSGLADLGLIVASLVATLLAFFL 80 (311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh-cccCHHHHHHHHHHHHHHHhHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999995 999999999999999999999999999999999999 999999999999999998
Q ss_pred HHHHHHHhhcCCcccceeeeee-ccCCccccchHHHHhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Q 007420 86 LAIWSKLSKRGCLEWTITLFSV-STLPNTLVMGIPLLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARLLISEQ 164 (604)
Q Consensus 86 ~~llar~~~r~~~~~~aaV~gl-asfsNtgfIGiPIl~alfG~~a~~~valiv~v~~lIl~pl~lvLmE~~~~~~~~~~~ 164 (604)
..++.++++++++++ .+++.+ +.|+|++++|+|++..+||++++.+.++...+++++++.++...++..+.+
T Consensus 81 ~~~~~~~~~~~~~~~-~~~~~~~~~~~N~g~lg~pi~~~~~G~~gl~~~~i~~~~~~~~~~~~g~~~l~~~~~~------ 153 (311)
T COG0679 81 LALIGRFLFKLDKRE-TVIFALASAFPNIGFLGLPVALSLFGEKGLAYAVIFLIIGLFLMFTLGVILLARSGGG------ 153 (311)
T ss_pred HHHHHHHHhccchhh-HHHHHHHHHhcccchhhHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------
Confidence 888877666655543 355566 699999999999999999999999999999999999999988887641100
Q ss_pred CCCCcCccceeeccccccccCCCCCccchhhhccCCceEEEEeecCCCcchhhhcccCCCCCCCCCCCCCCccccccccC
Q 007420 165 FPDTAGSIVSIHVDSDIMSLDGRQPLETDAEIKEDGKLHVTVRKSNASRSDIFSRRSQGLSSTTPRPSNLTNAEIYSLQS 244 (604)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (604)
T Consensus 154 -------------------------------------------------------------------------------- 153 (311)
T COG0679 154 -------------------------------------------------------------------------------- 153 (311)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCcchhhhhhcCCCCCCCCCccccccccCCCCCCCCCCCchhhhhhccccCCCCCCCCCCCCCCCCCCCc
Q 007420 245 SRNPTPRGSSFNHADFYSMMAGGRSSNFGATDVYGLSATSRGPTPRPSNYEDEANNANKSRFHHYPAPNPGMFSPTNNNT 324 (604)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (604)
T Consensus 154 -------------------------------------------------------------------------------- 153 (311)
T COG0679 154 -------------------------------------------------------------------------------- 153 (311)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccchhhhhhcccccccCCCCCCCCCCcccccceeccCCCCCCcccccCCCCCCCcchhhhhccCCCCCCCCCCCCCcc
Q 007420 325 RVNASANKKAINGQAQQKGEDGAGAGAGARDLHMFVWSSSASPVSDVFGGHDYNNNDHKEVRLAVSPQGGKGEGGGGHEE 404 (604)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (604)
.
T Consensus 154 -------------------------------------------------~------------------------------ 154 (311)
T COG0679 154 -------------------------------------------------T------------------------------ 154 (311)
T ss_pred -------------------------------------------------c------------------------------
Confidence 0
Q ss_pred cccccccccCccccCcCCCCCCCcCCCCCCCCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhcCCCCCcHH
Q 007420 405 YMEREDFSFGNRRGLESNNNEGEKVGDEKPKAMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLVSFRWNVQMPAI 484 (604)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vlkklLkNPiIIAiILGLilsll~~~~gI~LP~~ 484 (604)
+ ...++..|++++||+++|.++|++++.. |+++|++
T Consensus 155 ----------------------------~------------~~~~~~~~~~~~nP~i~a~i~g~~~~~~----~i~lP~~ 190 (311)
T COG0679 155 ----------------------------N------------KSLLSVLKKLLTNPLIIALILGLLLNLL----GISLPAP 190 (311)
T ss_pred ----------------------------h------------hHHHHHHHHHHhCcHHHHHHHHHHHHHc----CCCCcHH
Confidence 0 0235688899999999999999999999 9999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhccchhh
Q 007420 485 VAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMAAASIAVGLRGVLLHVAIVQAALPQGI 564 (604)
Q Consensus 485 L~~~L~~LG~aaiPLALf~IG~sLa~~~~~~~~~~k~vl~iv~iKLIV~PLLa~ll~~lLgLd~~~~~VlVL~AAmPtAv 564 (604)
+++++++++++++|++|+++|++|+..+ ..+...+..+....+|++++|++++++.+++++++++.++++++++||+|+
T Consensus 191 ~~~~~~~l~~a~~pl~li~lG~~L~~~~-~~~~~~~~~~~~~~~kll~~Pl~~~~~~~~~~l~~~~~~v~vl~~a~P~A~ 269 (311)
T COG0679 191 LDTAVDLLASAASPLALIALGLSLAFLK-LKGSKPPIILIALSLKLLLAPLVALLVAKLLGLSGLALQVLVLLSAMPTAV 269 (311)
T ss_pred HHHHHHHHHHhhhhHHHHHHhhhcchhh-hccccchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhCcHHh
Confidence 9999999999999999999999999843 223444555666666999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHHHHH-HHHHHH
Q 007420 565 VPFVFAKEYNVHPDILSTGVIFGMLIALPIT-LVYYIL 601 (604)
Q Consensus 565 ~s~IlA~~YG~d~elAAs~VllSTLLSLpl~-i~l~lL 601 (604)
+++++|++||.|++.+++++++||++|+.++ .+++++
T Consensus 270 ~~~v~a~~~~~~~~laa~~i~ist~ls~~t~p~~~~~l 307 (311)
T COG0679 270 NAYVLARQYGGDPRLAASTILLSTLLSLLTLPLLILLL 307 (311)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999996555 555544
No 5
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=99.73 E-value=6.6e-17 Score=170.10 Aligned_cols=150 Identities=19% Similarity=0.206 Sum_probs=120.1
Q ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHhh-c---CCCCCc-HHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHH
Q 007420 448 LIMVWRKLIRNPNTYSSLIGLVWSLVSF-R---WNVQMP-AIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIA 522 (604)
Q Consensus 448 l~~vlkklLkNPiIIAiILGLilsll~~-~---~gI~LP-~~L~~~L~~LG~aaiPLALf~IG~sLa~~~~~~~~~~k~v 522 (604)
.+..+|.+ .+|+++|.++|+++...+. | ++-.-| ..+.+.+.++|+.++|+.++++|..|....+...-+.+.+
T Consensus 238 ~~~~L~~i-~~Pptia~iiA~vigai~pLr~lifg~~apl~~itdsv~llG~~~IP~illvLGgnL~~g~~ss~~~~~~i 316 (408)
T KOG2722|consen 238 EKVILKEI-FAPPTIAAIIALVIGAIPPLRRLIFGEDAPLRVITDSVTLLGDGAIPCILLVLGGNLIQGLRSSALKTSVI 316 (408)
T ss_pred HHhhHHHh-cCchHHHHHHHHHHhcchHHHHHhhccCchHHHHHHHHHHhccccchhhhhhhccccccCchhcccCceEE
Confidence 34556665 5899999999999987632 2 222223 5899999999999999999999999987654334455667
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---h---C-CChHHHHHHHHHhccchhhHHHHHHHHcCCChhHHHHHHHHHHHHH-HHH
Q 007420 523 AFSMAVRFLTGPAVMAAASIA---V---G-LRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIA-LPI 594 (604)
Q Consensus 523 l~iv~iKLIV~PLLa~ll~~l---L---g-Ld~~~~~VlVL~AAmPtAv~s~IlA~~YG~d~elAAs~VllSTLLS-Lpl 594 (604)
+.+++.|+++.|++...+... + . -||..+.+++|+.++|+|++.--+++.+|..++++|.+++|+.++. +++
T Consensus 317 igiii~R~illP~~gl~iv~~A~kl~~ls~~DPlF~~VllLq~~~PpAi~lg~itqL~g~~e~Ecs~il~W~y~va~l~l 396 (408)
T KOG2722|consen 317 IGIIIGRYILLPLVGLGIVRLADKLGLLSTDDPLFQFVLLLQYASPPAINLGTITQLNGVAERECSVILFWTYAVASLSL 396 (408)
T ss_pred EEEEEeeeeccchhhHHHHHHHHHhCcCCCCCchhhhhhhhhhcCCchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHhhH
Confidence 778899999999988877643 2 3 4788999999999999999999999999999999999999999865 555
Q ss_pred HHHH
Q 007420 595 TLVY 598 (604)
Q Consensus 595 ~i~l 598 (604)
.+|.
T Consensus 397 tvw~ 400 (408)
T KOG2722|consen 397 TVWS 400 (408)
T ss_pred HHHH
Confidence 4443
No 6
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=99.00 E-value=3.4e-09 Score=109.57 Aligned_cols=105 Identities=14% Similarity=0.050 Sum_probs=90.4
Q ss_pred hHHHHHHHHHhhhcccchhhh-hcchhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhccchhhHHHHHHHHc
Q 007420 495 AGLGMAMFSLGLFMALQPRII-ACGNSIAAFSMAVRFLTGPAVMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEY 573 (604)
Q Consensus 495 aaiPLALf~IG~sLa~~~~~~-~~~~k~vl~iv~iKLIV~PLLa~ll~~lLgLd~~~~~VlVL~AAmPtAv~s~IlA~~Y 573 (604)
....++||.+|+++...+... .++.+......+.|++++|++++.+..++++++.....+++++++|++.++++++++|
T Consensus 12 ~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~~~l~~~~~~glvL~~~~P~~~~s~v~t~~~ 91 (286)
T TIGR00841 12 ILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKVFKLPPELAVGVLIVGCCPGGTASNVFTYLL 91 (286)
T ss_pred HHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHheeeCCCchHHHHHHHHh
Confidence 447889999999999876321 2334567788889999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHH
Q 007420 574 NVHPDILSTGVIFGMLIALPITLVYY 599 (604)
Q Consensus 574 G~d~elAAs~VllSTLLSLpl~i~l~ 599 (604)
|+|.++++..+.+||++|+.++..+.
T Consensus 92 ~gn~~la~~~~~~stlls~vt~Pl~l 117 (286)
T TIGR00841 92 KGDMALSISMTTCSTLLALGMMPLLL 117 (286)
T ss_pred CCCHhhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999955444443
No 7
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=98.62 E-value=1.6e-06 Score=91.90 Aligned_cols=137 Identities=9% Similarity=0.040 Sum_probs=105.5
Q ss_pred HHHHHhchHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHH-HHHHhHHH------HHHHHHhhhcccchh-hhhcchhHHH
Q 007420 452 WRKLIRNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSIS-ILSDAGLG------MAMFSLGLFMALQPR-IIACGNSIAA 523 (604)
Q Consensus 452 lkklLkNPiIIAiILGLilsll~~~~gI~LP~~L~~~L~-~LG~aaiP------LALf~IG~sLa~~~~-~~~~~~k~vl 523 (604)
+++.+....++++++|++..+. .|......-. .+.....| +.|+.+|..|..++. ...+++|...
T Consensus 4 ~~~~~~~~~~~~~i~~~~~g~~-------~P~~~~~~~~~~~~~~~~~~~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~ 76 (328)
T TIGR00832 4 LERYLTLWIFLAIAAGVGLGVL-------FPSVFQALAALEVATVSIPIAIGLILMMYPPLAKVDYSALGDVFKDPKGLI 76 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-------ccccHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHcCchHHH
Confidence 4455666778888888888876 4543222211 11223333 467888888877652 2345678889
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHhccchhhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHH
Q 007420 524 FSMAVRFLTGPAVMAAASIAV-GLRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPIT 595 (604)
Q Consensus 524 ~iv~iKLIV~PLLa~ll~~lL-gLd~~~~~VlVL~AAmPtAv~s~IlA~~YG~d~elAAs~VllSTLLSLpl~ 595 (604)
...+..++++|++++.+++++ +++++...-+++.+++|+++.+.+++...|+|..++.+...++|++++.++
T Consensus 77 ~~~~~qfvi~Plla~~l~~l~~~~~p~l~~GliLv~~~Pgg~~S~v~T~lAkGnvalsv~lt~~stLl~~~~~ 149 (328)
T TIGR00832 77 LSLFINWIIGPFLMFLLAWLFLRDLFEYIAGLILLGLARCIAMVFVWNQLAKGDPEYTLVLVAVNSLFQVFLY 149 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999864 999999999999999999999999999999999999999999999984444
No 8
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=98.57 E-value=1.3e-06 Score=92.30 Aligned_cols=129 Identities=13% Similarity=0.125 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchh-hhhcchhHHHHHHHHHHHHHHHHHH
Q 007420 460 NTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPR-IIACGNSIAAFSMAVRFLTGPAVMA 538 (604)
Q Consensus 460 iIIAiILGLilsll~~~~gI~LP~~L~~~L~~LG~aaiPLALf~IG~sLa~~~~-~~~~~~k~vl~iv~iKLIV~PLLa~ 538 (604)
+++.++++.+.-. .|+.....-..+ .....+.||..|.+|...+. ...++++..+...+..++++|++++
T Consensus 16 ~~~~v~~a~~~~~--------~~~~~~~~~~~~-~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~ 86 (319)
T COG0385 16 LLWVVLLAAIAPI--------FPETFGWLGSAI-PIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLAL 86 (319)
T ss_pred HHHHHHHHHHHHh--------ccccchhhhHHH-HHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence 3455555544333 355443333222 56677778888888887652 2246788999999999999999999
Q ss_pred HHHHHhCCChHHHHHHHHHhccchhhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHH
Q 007420 539 AASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLV 597 (604)
Q Consensus 539 ll~~lLgLd~~~~~VlVL~AAmPtAv~s~IlA~~YG~d~elAAs~VllSTLLSLpl~i~ 597 (604)
++.+++.+|++...-+++.+++|.++.+.+++.-+++|...+-....+||+++..++++
T Consensus 87 ~~~~~~~l~~~l~~Gl~ll~~~Pggv~S~~~t~lAkGnValsV~~tsvStll~~f~tPl 145 (319)
T COG0385 87 LLAKLFPLPPELAVGLLLLGCCPGGVASNAMTYLAKGNVALSVCSTSVSTLLGPFLTPL 145 (319)
T ss_pred HHHHHcCCCHHHHHhHHheeeCCCchhHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999444333
No 9
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=98.49 E-value=2.2e-06 Score=83.24 Aligned_cols=106 Identities=19% Similarity=0.192 Sum_probs=82.3
Q ss_pred HHHHHHHHHhhhcccchhh-hhcchhHHHHHHHHHHHHHHHHHHHHH-HHhCCChHHHHHHHHHhccchhhHHHHHHHHc
Q 007420 496 GLGMAMFSLGLFMALQPRI-IACGNSIAAFSMAVRFLTGPAVMAAAS-IAVGLRGVLLHVAIVQAALPQGIVPFVFAKEY 573 (604)
Q Consensus 496 aiPLALf~IG~sLa~~~~~-~~~~~k~vl~iv~iKLIV~PLLa~ll~-~lLgLd~~~~~VlVL~AAmPtAv~s~IlA~~Y 573 (604)
..-+.||.+|..+...+.. ..++.+.+....+.+++++|++++++. .++++++.....+++++++|.+..+.+++...
T Consensus 3 ~l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~~~~~~~Gl~l~~~~P~~~~s~~~t~l~ 82 (187)
T PF01758_consen 3 LLFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLLPLSPALALGLLLVAACPGGPASNVFTYLA 82 (187)
T ss_dssp HHHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT--HHHHHHHHHHHHS-B-THHHHHHHHT
T ss_pred hhhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 4567899999999987632 234456677788999999999999999 88899999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 007420 574 NVHPDILSTGVIFGMLIALPITLVYYIL 601 (604)
Q Consensus 574 G~d~elAAs~VllSTLLSLpl~i~l~lL 601 (604)
|+|.+++.+.+.++|+++..+++++..+
T Consensus 83 ~Gd~~ls~~lt~istll~~~~~P~~~~l 110 (187)
T PF01758_consen 83 GGDVALSVSLTLISTLLAPFLMPLLLYL 110 (187)
T ss_dssp T--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccccceeeHHHHHHHHHHHHHHHH
Confidence 9999999999999999995555544443
No 10
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=97.81 E-value=0.00029 Score=74.47 Aligned_cols=135 Identities=15% Similarity=0.155 Sum_probs=103.7
Q ss_pred chHHHHHHHHHHHHHHhhcCCCCCcHHHHHHH--HHHHHhHHHHHHHHHhhhcccchhh-hhcchhHHHHHHHHHHHHHH
Q 007420 458 NPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSI--SILSDAGLGMAMFSLGLFMALQPRI-IACGNSIAAFSMAVRFLTGP 534 (604)
Q Consensus 458 NPiIIAiILGLilsll~~~~gI~LP~~L~~~L--~~LG~aaiPLALf~IG~sLa~~~~~-~~~~~k~vl~iv~iKLIV~P 534 (604)
|+.++++++++++... +|-|......+ +...+..+.+..|.-|++|...+.. -.+++|........-+++.|
T Consensus 1 ~~fl~~l~~ai~la~~-----~P~~g~~~~~~~~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~P 75 (313)
T PF13593_consen 1 QWFLLGLLLAILLAYL-----FPAPGAAGGVIKPEYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFP 75 (313)
T ss_pred CchHHHHHHHHHHHHH-----cCcccccCCccchhhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 4567888888888776 33333322233 2455566889999999999986632 24577888889999999999
Q ss_pred HHHHHHHHHhC--CChHHHHHHHHHhccchhhHH-HHHHHHcCCChhHHHHHHHHHHHHHHHHHHH
Q 007420 535 AVMAAASIAVG--LRGVLLHVAIVQAALPQGIVP-FVFAKEYNVHPDILSTGVIFGMLIALPITLV 597 (604)
Q Consensus 535 LLa~ll~~lLg--Ld~~~~~VlVL~AAmPtAv~s-~IlA~~YG~d~elAAs~VllSTLLSLpl~i~ 597 (604)
++++.+..+++ .+++...-+++.++||+.+.+ .++++.-|+|...+-....+|+++++.+++.
T Consensus 76 ll~~~~~~l~~~~~~~~l~~Gl~~~~~lPtTv~S~v~~T~~AgGN~a~Al~~~~~snllgv~ltP~ 141 (313)
T PF13593_consen 76 LLGFGLSRLFPAFLPPELALGLLILACLPTTVSSSVVLTRLAGGNVALALFNAVLSNLLGVFLTPL 141 (313)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHhhCCchhhHHHHHHHHcCCCHHHHHHHHHHHhhhhHhHHHH
Confidence 99999988773 678888999999999998555 6799999999999999999999999444333
No 11
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=97.26 E-value=0.0053 Score=65.71 Aligned_cols=146 Identities=14% Similarity=0.105 Sum_probs=107.2
Q ss_pred HHHHHHHHhchHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHH--HHHHhHHHHHHHHHhh--------hcccchhhhhcc
Q 007420 449 IMVWRKLIRNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSIS--ILSDAGLGMAMFSLGL--------FMALQPRIIACG 518 (604)
Q Consensus 449 ~~vlkklLkNPiIIAiILGLilsll~~~~gI~LP~~L~~~L~--~LG~aaiPLALf~IG~--------sLa~~~~~~~~~ 518 (604)
.+.+.+.+.--+++++++|+.+... .|+ +.+.++ ..++..+|++.-.+=+ .....+ ...++
T Consensus 9 l~~~dk~l~~wv~l~i~~Gi~lG~~-------~p~-~~~~l~~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~-~v~k~ 79 (342)
T COG0798 9 LSFLDKYLTLWVFLAIAIGILLGVH-------FPG-LAQLLGKLEFGGVSIPIAIGLILMMYPPMLKIDFEELK-NVFKD 79 (342)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhc-------ccc-hhhhcccceeCceehhHHHHHHHHHhHHHhcCCHHHHH-HHHhc
Confidence 4567777777789999999987765 565 334444 4555666655433222 111111 12445
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHhccchhhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHH-H
Q 007420 519 NSIAAFSMAVRFLTGPAVMAAASIAV-GLRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPIT-L 596 (604)
Q Consensus 519 ~k~vl~iv~iKLIV~PLLa~ll~~lL-gLd~~~~~VlVL~AAmPtAv~s~IlA~~YG~d~elAAs~VllSTLLSLpl~-i 596 (604)
.|......+.-.++.|++++.+++++ +..++...-+++....||-.++.+.+..-++|.|+++..|.++.++.+.+. .
T Consensus 80 ~k~L~lsL~~Nwii~P~lm~~la~~fl~~~pey~~GlILlglApC~aMVivw~~La~Gd~~~tlv~Va~n~l~qiv~y~~ 159 (342)
T COG0798 80 PKPLILSLFVNWIIGPLLMFALAWFFLPDEPEYRAGLILLGLAPCIAMVIVWSGLAKGDRELTLVLVAFNSLLQIVLYAP 159 (342)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhhhHHHHHHHHhhccCcHhhhhHHHHHHHHHHHHHHHH
Confidence 67888899999999999999998764 666788999999999999999999999999999999999999999996554 4
Q ss_pred HHHHHhc
Q 007420 597 VYYILLG 603 (604)
Q Consensus 597 ~l~lLL~ 603 (604)
+.+++++
T Consensus 160 ~~~~~l~ 166 (342)
T COG0798 160 LGKFFLG 166 (342)
T ss_pred HHHHHHh
Confidence 4444443
No 12
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=96.93 E-value=0.67 Score=50.71 Aligned_cols=136 Identities=14% Similarity=0.165 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhccccChhHHHHHHHHHHHHHhHHHHHHHhhcCCCCCc---cHHHHHHHHHHHHHHHHHHH
Q 007420 11 MTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISSNDPYKM---NLRFIAADTLQKIIVLVVLA 87 (604)
Q Consensus 11 LsiilPIFlLI~LGyla~R~rg~~s~~~~~~LnrFVf~~ALPALLF~~IA~~dl~~l---~~~fl~ay~Lg~livfll~~ 87 (604)
+..+-|+.+.+++|.++.-. |+++......+-++|..+.+|+.++..+-+.|+.++ -++.+++|+++++.+.+...
T Consensus 22 f~~l~~~vl~~~~~~~lsnl-gli~~p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~F~~~~~g~viG~~ 100 (378)
T PF05684_consen 22 FKYLPGAVLCYLLGMLLSNL-GLIDSPASSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLAFLIGAVGTVIGAV 100 (378)
T ss_pred HhhcCHHHHHHHHHHHHHHC-CCcCCCCcchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 44556888999999999996 999656566789999999999999999999999987 78999999998887776443
Q ss_pred HHHHHhhc--CCcccc-eeeeeeccC----CccccchHHHHhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007420 88 IWSKLSKR--GCLEWT-ITLFSVSTL----PNTLVMGIPLLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEY 154 (604)
Q Consensus 88 llar~~~r--~~~~~~-aaV~glasf----sNtgfIGiPIl~alfG~~a~~~valiv~v~~lIl~pl~lvLmE~ 154 (604)
+-...++. ++..|. ++.+. ++| .|..-++- .++-+. ..+...++.++++...-..+++-.
T Consensus 101 va~~l~~~~l~~~~wk~ag~l~-gsyiGGs~N~~Av~~-----al~~~~-~~~~a~~aaDnv~~~~~~~~l~~l 167 (378)
T PF05684_consen 101 VAFLLFGGFLGPEGWKIAGMLA-GSYIGGSVNFVAVAE-----ALGVSD-SLFAAALAADNVVMALWFAFLLAL 167 (378)
T ss_pred HHHHHHhhcccchHHHHHHHHH-hcccCchhHHHHHHH-----HHCCCH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32222322 122332 22222 344 67666553 355443 567778889998887777777655
No 13
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=95.58 E-value=0.54 Score=47.89 Aligned_cols=140 Identities=13% Similarity=0.080 Sum_probs=98.4
Q ss_pred HHHHHHHhchHHHHHHHHH-HHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHHHHHHHH
Q 007420 450 MVWRKLIRNPNTYSSLIGL-VWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAV 528 (604)
Q Consensus 450 ~vlkklLkNPiIIAiILGL-ilsll~~~~gI~LP~~L~~~L~~LG~aaiPLALf~IG~sLa~~~~~~~~~~k~vl~iv~i 528 (604)
+-+++.+.||+++++++=+ ++.++ |++..+... .-+++...- .-+-.+++.-|.++....+++++.+...+..
T Consensus 13 ~r~~~~~l~P~l~a~~~ii~~L~~~----~i~y~~Y~~-gg~~l~~lL-gPatVALAvPLY~~~~~l~~~~~~il~~~~~ 86 (215)
T PF04172_consen 13 KRFKSPFLNPLLIAIVLIIAFLLLT----GIPYEDYMQ-GGDILSFLL-GPATVALAVPLYRQRRLLKKNWIPILVGVLV 86 (215)
T ss_pred HHcCCCcccHHHHHHHHHHHHHHHH----CCCHHHHHH-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566799999988644 44455 776665553 455554443 4457888999998766667888888888888
Q ss_pred HHHHHHHHHHHHHHHhCCChHHHHHHHHHh-ccchhhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHH
Q 007420 529 RFLTGPAVMAAASIAVGLRGVLLHVAIVQA-ALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVY 598 (604)
Q Consensus 529 KLIV~PLLa~ll~~lLgLd~~~~~VlVL~A-AmPtAv~s~IlA~~YG~d~elAAs~VllSTLLSLpl~i~l 598 (604)
=-++.-+..+.+++++|++++....+.-=+ ..|. +.-++++.|+++++++..+++|=++...+-.++
T Consensus 87 g~~~~~~~~~~l~~~lgl~~~~~~Sl~pkSVTtpi---Ai~is~~iGG~~sLta~~VvitGi~Ga~~g~~l 154 (215)
T PF04172_consen 87 GSLVSIFSAVLLARLLGLSPEIILSLAPKSVTTPI---AIEISEQIGGIPSLTAVFVVITGILGAVLGPPL 154 (215)
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHhhHHH---HHHHHHHhCChHHHHHHHHHHHhhHHHHhHHHH
Confidence 888888888888999999987654443322 2233 344689999999999999999888774433333
No 14
>PRK10711 hypothetical protein; Provisional
Probab=95.52 E-value=0.57 Score=48.27 Aligned_cols=139 Identities=13% Similarity=0.071 Sum_probs=97.7
Q ss_pred HHHHhchHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHHHHHHHHHHHH
Q 007420 453 RKLIRNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLT 532 (604)
Q Consensus 453 kklLkNPiIIAiILGLilsll~~~~gI~LP~~L~~~L~~LG~aaiPLALf~IG~sLa~~~~~~~~~~k~vl~iv~iKLIV 532 (604)
+..+.||+++++++-+.+-.. .|++..+. .+..+++...-.| |-.+++.-|.++....+++++.+...+++=-++
T Consensus 27 ~~~~l~Pll~s~~~ii~~L~~---~~i~Y~~Y-~~g~~~l~~lLgP-AtVALAvPLY~q~~~lk~~~~~I~~~~~vG~~v 101 (231)
T PRK10711 27 KFPLLNPLLVAMVVIIPFLLL---TGIPYEHY-FKGSEVLNDLLQP-AVVALAFPLYEQLHQIRARWKSIISICFIGSVV 101 (231)
T ss_pred CCCcccHHHHHHHHHHHHHHH---hCCCHHHH-HhccHHHHhhhhH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 556779999988765554433 16665555 3344555544444 556777888887666678888888888888888
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHhc-cchhhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHH
Q 007420 533 GPAVMAAASIAVGLRGVLLHVAIVQAA-LPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYY 599 (604)
Q Consensus 533 ~PLLa~ll~~lLgLd~~~~~VlVL~AA-mPtAv~s~IlA~~YG~d~elAAs~VllSTLLSLpl~i~l~ 599 (604)
.-+..+.+++++|+|++....+.--+. .|. +.-++++.|+++++++..+.++=++...+-..++
T Consensus 102 ~i~s~~~l~~~lg~~~~~~~Sl~pkSVTtPI---Am~is~~iGG~~sLta~~ViitGi~Ga~~g~~ll 166 (231)
T PRK10711 102 AMVTGTAVALWMGATPEIAASILPKSVTTPI---AMAVGGSIGGIPAISAVCVIFVGILGAVFGHTLL 166 (231)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHhhhhhhHHH---HHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999886555443332 233 3446899999999999999998887744433333
No 15
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=95.29 E-value=1.2 Score=46.00 Aligned_cols=140 Identities=11% Similarity=0.074 Sum_probs=95.7
Q ss_pred HHHHhchHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHHHHHHHHHHHH
Q 007420 453 RKLIRNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLT 532 (604)
Q Consensus 453 kklLkNPiIIAiILGLilsll~~~~gI~LP~~L~~~L~~LG~aaiPLALf~IG~sLa~~~~~~~~~~k~vl~iv~iKLIV 532 (604)
+..+.||+++++++-+.+-.. .+++..+. .+..+++...-.| |-.+++.=|.++....+++++.+...+++=-++
T Consensus 32 ~~~~lnPll~s~~~ii~~L~~---~~i~Y~~Y-~~g~~~l~~lLgP-AtVALAvPLY~q~~~lk~~~~~Il~~~~vG~~~ 106 (232)
T PRK04288 32 GFFLFTPLFVAMVLGIAFLKL---TGISYEEY-NIGGDIISFFLEP-ATIAFAIPLYKKRDVLKKYWWQILGGIVVGSVC 106 (232)
T ss_pred CCcchhHHHHHHHHHHHHHHH---hCCCHHHH-HhhhHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 444679999988866555443 16665554 3344444443333 556777788877666678888888888888888
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHhccchhhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHH
Q 007420 533 GPAVMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYY 599 (604)
Q Consensus 533 ~PLLa~ll~~lLgLd~~~~~VlVL~AAmPtAv~s~IlA~~YG~d~elAAs~VllSTLLSLpl~i~l~ 599 (604)
.-+..+.+++++|+|++....+.=-+. +...+.-++++.|+++.+++..++++=++...+-.+++
T Consensus 107 ~i~s~~~la~~lgl~~~~~~Sl~pKSV--TtPIAm~is~~iGG~psLtA~~ViitGi~Gai~g~~ll 171 (232)
T PRK04288 107 SVLIIYLVAKLIQLDNAVMASMLPQAA--TTAIALPVSAGIGGIKEITSFAVIFNAVIIYALGAKFL 171 (232)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHhhHhh--hHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888999999999875444332221 12233456999999999999999998887744444333
No 16
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=95.05 E-value=0.35 Score=50.56 Aligned_cols=130 Identities=10% Similarity=0.091 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHhhhhhccccChhHHHHHHHHHHHHHhH---HHHHHHhhcC--CCCCccHHHHHHHHHHHHHHHHHHHH
Q 007420 14 MVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVP---LLSFHFISSN--DPYKMNLRFIAADTLQKIIVLVVLAI 88 (604)
Q Consensus 14 ilPIFlLI~LGyla~R~rg~~s~~~~~~LnrFVf~~ALP---ALLF~~IA~~--dl~~l~~~fl~ay~Lg~livfll~~l 88 (604)
..-+++=+.+|.+.+|+ . ++..+.+.+ .-+++.- ++++..++.. .+.+..+..+.+..+-.++.|+++++
T Consensus 140 ~~~v~vPl~lG~~~r~~---~-p~~~~~~~~-~~~~s~~~l~liv~~~~~~~~~~i~~~~~~~~~~~~ll~~~~~~~g~~ 214 (286)
T TIGR00841 140 LVAVLIPVSIGMLVKHK---L-PQIAKIILK-VGLISVFLLSVIIAVVGGINVENLATIGPLLLLVGILLPLAGFLLGYL 214 (286)
T ss_pred HHHHHHHHHHHHHHHHH---h-HHHHHHHHh-CchHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 34444446678888775 2 333343433 2223222 2222222211 12222555666666666777888887
Q ss_pred HHHHhhcCCcccceeeeee-ccCCccccchHHHHhhhhccchhhHHHHHHHHHHHHHHHHHHHH
Q 007420 89 WSKLSKRGCLEWTITLFSV-STLPNTLVMGIPLLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFM 151 (604)
Q Consensus 89 lar~~~r~~~~~~aaV~gl-asfsNtgfIGiPIl~alfG~~a~~~valiv~v~~lIl~pl~lvL 151 (604)
++|.++.++.|+ -..++ ++.-|++ +|+++....|+++.+.+.+.+.+++++....++...
T Consensus 215 ~a~~~~l~~~~~--~t~~~~~g~qN~~-lal~la~~~f~~~~a~~~~~~~v~~~~~~~~~a~~~ 275 (286)
T TIGR00841 215 LAKLAGLPWARC--RTISIEVGMQNSQ-LCSTIAQLSFSPEVAVPSAIFPLIYALFQLAFALLF 275 (286)
T ss_pred HHHHhCCCHhhh--eeeeeeeecccHH-HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877654433332 22355 7889998 999999999998888888877778877766666554
No 17
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=94.89 E-value=1.3 Score=45.52 Aligned_cols=135 Identities=14% Similarity=0.100 Sum_probs=93.2
Q ss_pred HHHHhchHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHHHHHHHHHHHH
Q 007420 453 RKLIRNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLT 532 (604)
Q Consensus 453 kklLkNPiIIAiILGLilsll~~~~gI~LP~~L~~~L~~LG~aaiPLALf~IG~sLa~~~~~~~~~~k~vl~iv~iKLIV 532 (604)
+..+.||+++++++-+.+-.. .+++-.+. .+-.+++.. ...-+..+++.-|.++....+++++.+...+++=-++
T Consensus 26 ~~~~lnPvl~~~~~ii~~L~~---~~i~Y~~Y-~~g~~~l~~-lLgPAtVALAvPLY~~~~~lk~~~~~Il~~~~~G~~~ 100 (226)
T TIGR00659 26 KRPYLNPLLLTPLVLVGILLL---VGIPYESY-MLGGGVIND-LLGPAVVALAIPLYKQLPQIKKYWKEIILNVAVGSVI 100 (226)
T ss_pred CCccccHHHHHHHHHHHHHHH---hCCCHHHH-HHhhHHHHH-hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 566789999998866555443 16665555 344455543 3344567777888887666677888888888877788
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHhccchhhHHHHHHHHcCCChhHHHHHHHHHHHHHHHH
Q 007420 533 GPAVMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPI 594 (604)
Q Consensus 533 ~PLLa~ll~~lLgLd~~~~~VlVL~AAmPtAv~s~IlA~~YG~d~elAAs~VllSTLLSLpl 594 (604)
.-...+.+++++|++++....+.--+. |...+.-.+++.|+++++++..+.+|=++...+
T Consensus 101 ~~~s~~~la~~lg~~~~i~~Sl~pkSv--TtpiAm~vs~~iGG~~sLta~~vvitGi~Ga~~ 160 (226)
T TIGR00659 101 AIISGTLLALLLGLGPEIIASLLPKSV--TTPIAMHVSEMIGGIPAVTAVFVILTGLLGTVF 160 (226)
T ss_pred HHHHHHHHHHHHCcCHHHHHHhhhHHh--hHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence 888888889999999875543322221 122234468999999999999999988876433
No 18
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=94.84 E-value=0.84 Score=46.95 Aligned_cols=131 Identities=13% Similarity=0.091 Sum_probs=94.9
Q ss_pred HHHHHHhchHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHHHHHHHHHH
Q 007420 451 VWRKLIRNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRF 530 (604)
Q Consensus 451 vlkklLkNPiIIAiILGLilsll~~~~gI~LP~~L~~~L~~LG~aaiPLALf~IG~sLa~~~~~~~~~~k~vl~iv~iKL 530 (604)
=.|+.+.||.++++++-+.+-.. .+++-.+.. +-.+++-..-.| |-.++..=|..+....+++|+.+...+++=-
T Consensus 27 r~~~~~l~PlLv~~~~li~~L~~---~~i~Y~~Y~-~g~~~i~~lLgP-AtVAlAvPLYkq~~~ik~~w~~I~~g~~vGs 101 (230)
T COG1346 27 RTKSPFLNPLLVATVLLIAFLLL---FGISYEDYM-KGGQWINFLLGP-ATVALAVPLYKQRHLIKRHWKPILAGVLVGS 101 (230)
T ss_pred hcCCcccchHHHHHHHHHHHHHH---cCCCHHHHh-cccHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999877766554 266554433 334455555555 6777788888776667888998888888887
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHhccchhhHH---HHHHHHcCCChhHHHHHHHHHHHHH
Q 007420 531 LTGPAVMAAASIAVGLRGVLLHVAIVQAALPQGIVP---FVFAKEYNVHPDILSTGVIFGMLIA 591 (604)
Q Consensus 531 IV~PLLa~ll~~lLgLd~~~~~VlVL~AAmPtAv~s---~IlA~~YG~d~elAAs~VllSTLLS 591 (604)
++.=...+.++++||++++... +-+|-++.+ .-.+++.|+-++.++..|.++=++.
T Consensus 102 ~~ai~s~~llak~~g~~~~~~~-----Sl~PkSvTTpiAm~vs~~iGGip~ltav~Vi~tGi~G 160 (230)
T COG1346 102 VVAIISGVLLAKLFGLSPELIL-----SLLPKSVTTPIAMEVSESIGGIPALTAVFVILTGILG 160 (230)
T ss_pred HHHHHHHHHHHHHhCCCHHHHH-----HhcccccccHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 8877888888999999998544 345544333 3468899999999999998888776
No 19
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=94.80 E-value=0.57 Score=49.87 Aligned_cols=142 Identities=13% Similarity=0.059 Sum_probs=86.4
Q ss_pred HhchHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHHHHHHHHHHHHHHH
Q 007420 456 IRNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPA 535 (604)
Q Consensus 456 LkNPiIIAiILGLilsll~~~~gI~LP~~L~~~L~~LG~aaiPLALf~IG~sLa~~~~~~~~~~k~vl~iv~iKLIV~PL 535 (604)
--+++++|+++|+++.-. -+..|+.+..-++...+....++.+.+|..+...+.. .-.++.+. ...+=.++.=.
T Consensus 25 ~l~~~~~AillG~~i~n~----~~~~~~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~~~i~-~~G~~~~~-~~~~~v~~~~~ 98 (305)
T PF03601_consen 25 GLGALLIAILLGMLIGNL----FFGLPARFKPGIKFSSKKLLRLGIVLLGFRLSFSDIL-ALGWKGLL-IIIIVVILTFL 98 (305)
T ss_pred CccHHHHHHHHHHHHhhh----ccCCcHHHHhHHHHHHHHHHHHHHHHHCccccHHHHH-HhCccHHH-HHHHHHHHHHH
Confidence 346789999999999831 2568899999999999999999999999999987622 22333333 33333333334
Q ss_pred HHHHHH-HHhCCChHHHHHHHHHhccchhhHHHHHHHHcCCChhHHHHHHHHHHHHH---HHHHHHHHHHhc
Q 007420 536 VMAAAS-IAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIA---LPITLVYYILLG 603 (604)
Q Consensus 536 La~ll~-~lLgLd~~~~~VlVL~AAmPtAv~s~IlA~~YG~d~elAAs~VllSTLLS---Lpl~i~l~lLL~ 603 (604)
+.+.+. +++++|+.....+-.-.+.-=+......+..-+.++|..+..+..-+++. +.+.+++.-.++
T Consensus 99 ~~~~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a~~~~~a~ava~V~lfg~vam~~~P~l~~~l~ 170 (305)
T PF03601_consen 99 LTYWLGRRLFGLDRKLAILIAAGTSICGASAIAATAPVIKAKEEDVAYAVATVFLFGTVAMFLYPLLGHALG 170 (305)
T ss_pred HHHHHHHHHhCCCHHHHHHHHhhcccchHHHHHHHcccccCCCCceeeeehHHHHHHHHHHHHHHHHHHHhC
Confidence 455555 88999876544333333332233333344445555555554444444443 444555554444
No 20
>COG3329 Predicted permease [General function prediction only]
Probab=92.61 E-value=11 Score=40.65 Aligned_cols=62 Identities=16% Similarity=0.157 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccc
Q 007420 447 ILIMVWRKLIRNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQ 511 (604)
Q Consensus 447 il~~vlkklLkNPiIIAiILGLilsll~~~~gI~LP~~L~~~L~~LG~aaiPLALf~IG~sLa~~ 511 (604)
..+++++..+.||-+...+.|+++.++ .|-+--+.+..+.+-+=+-...+-|+.+|+.-.++
T Consensus 206 ~~~ell~Esflnpal~lllggl~iGli---tGe~g~~vl~~F~~~lFqGvL~lflL~MGm~A~rr 267 (372)
T COG3329 206 KIWELLQESFLNPALVLLLGGLAIGLI---TGEQGESVLKPFFDPLFQGVLCLFLLDMGMTAGRR 267 (372)
T ss_pred hhHHHHHHHHcCchHHHHHHHHHHhhe---eccCchhhhhhhhHHHHHHHHHHHHHHHhHHHHHH
Confidence 457899999999999999999999876 24444455666777777778888888999877653
No 21
>COG2855 Predicted membrane protein [Function unknown]
Probab=92.17 E-value=1.2 Score=48.12 Aligned_cols=138 Identities=17% Similarity=0.215 Sum_probs=87.2
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHHHHHHHHHHHHHHHHHH
Q 007420 459 PNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMA 538 (604)
Q Consensus 459 PiIIAiILGLilsll~~~~gI~LP~~L~~~L~~LG~aaiPLALf~IG~sLa~~~~~~~~~~k~vl~iv~iKLIV~PLLa~ 538 (604)
|+++|+++|+++... .+.|+-...-++.-.+.-..++....|..|+..... .-.. ..+.....-+...=++++
T Consensus 39 al~lAIllGi~l~~l-----~~~~~~~~~GI~fs~k~LLr~gIvLlG~~ltl~~i~-~~G~-~~v~~~~~~l~~t~~~~~ 111 (334)
T COG2855 39 ALTLAILLGILLGIL-----PQIPAQTSAGITFSSKKLLRLGIVLLGFRLTLSDIA-DVGG-SGVLIIAITLSSTFLFAY 111 (334)
T ss_pred HHHHHHHHHHHHhcc-----ccchhhhccchhhhHHHHHHHHHHHHcceeeHHHHH-HcCc-cHHHHHHHHHHHHHHHHH
Confidence 899999999999954 456777888888888999999999999999987522 1122 233333444444445666
Q ss_pred HHHHHhCCChHHHHHHHHHhccchhhHHHHHHHHcCCChhHHHHHHHHHHHHH---HHHHHHHHHHhc
Q 007420 539 AASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIA---LPITLVYYILLG 603 (604)
Q Consensus 539 ll~~lLgLd~~~~~VlVL~AAmPtAv~s~IlA~~YG~d~elAAs~VllSTLLS---Lpl~i~l~lLL~ 603 (604)
.+..++++|......+=.-++.--+......+-.-+.+++..+..|..-++++ +.+.++++-+++
T Consensus 112 ~lg~~lgld~~~a~Lia~GssICGasAiaA~~pvika~~~eva~aIa~V~lfgtia~llyP~l~~~l~ 179 (334)
T COG2855 112 FLGKLLGLDKKLALLIAAGSSICGASAIAATAPVIKAEEEEVAVAIAVVVLFGTLAMLLYPLLYPLLG 179 (334)
T ss_pred HHHHHhCCCHHHHHHHHccchhhHHHHHHHhCCcCCCCccccceehhhHHHHHHHHHHHHHHHHHHhC
Confidence 66778899865432222222222233333344456777777777777666665 444455555554
No 22
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=91.94 E-value=5.8 Score=45.86 Aligned_cols=133 Identities=14% Similarity=0.073 Sum_probs=87.5
Q ss_pred hchHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHHHHHHHHHHHHHHHH
Q 007420 457 RNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAV 536 (604)
Q Consensus 457 kNPiIIAiILGLilsll~~~~gI~LP~~L~~~L~~LG~aaiPLALf~IG~sLa~~~~~~~~~~k~vl~iv~iKLIV~PLL 536 (604)
-++.+-|.++|+++.-. +.-..+...++.+.+...|+-.+.+|+.+.... ....+..++..++..+++-++.
T Consensus 237 ls~~LGAFlaGl~l~~s------~~~~~l~~~i~pf~~lll~lFFi~vGm~id~~~--l~~~~~~il~~~~~~l~~K~~~ 308 (601)
T PRK03659 237 LSMALGTFIAGVLLAES------EYRHELEIAIEPFKGLLLGLFFISVGMALNLGV--LYTHLLWVLISVVVLVAVKGLV 308 (601)
T ss_pred ccHHHHHHHHHHHhcCC------chHHHHHHHHHHHHHHHHHHHHHHHhhhccHHH--HHHhHHHHHHHHHHHHHHHHHH
Confidence 46677777777776633 344556667777788999999999999998753 2334555555666677777888
Q ss_pred HHHHHHHhCCChHHH-HHH-HHHhccchhhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHH
Q 007420 537 MAAASIAVGLRGVLL-HVA-IVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLV 597 (604)
Q Consensus 537 a~ll~~lLgLd~~~~-~Vl-VL~AAmPtAv~s~IlA~~YG~d~elAAs~VllSTLLSLpl~i~ 597 (604)
+++.+..++++.... .+. .+...-..+...+-++.++|.=.+...+.+...+++|+.+.++
T Consensus 309 ~~~~~~~~g~~~~~al~~g~~L~~~Gef~~vl~~~a~~~g~i~~~~~~~lv~~v~ls~~~tP~ 371 (601)
T PRK03659 309 LYLLARLYGLRSSERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMALLLVVVTLSMMTTPL 371 (601)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 888888888875432 222 2222344555555667788876566666667777777443333
No 23
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=91.44 E-value=7.2 Score=45.34 Aligned_cols=132 Identities=11% Similarity=0.065 Sum_probs=82.1
Q ss_pred chHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHHHHHHHHHHHHHHHHH
Q 007420 458 NPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVM 537 (604)
Q Consensus 458 NPiIIAiILGLilsll~~~~gI~LP~~L~~~L~~LG~aaiPLALf~IG~sLa~~~~~~~~~~k~vl~iv~iKLIV~PLLa 537 (604)
++.+=|.++|+++.- -+.-..+.+-+..+.+...|+=.+.+|+.+.... ....+..++..++..+++-++.+
T Consensus 241 s~~lGAFlAGl~l~~------~~~~~~le~~i~pf~~lll~lFFi~vG~~id~~~--l~~~~~~il~~~~~~~~~K~~~~ 312 (621)
T PRK03562 241 SMALGAFLAGVLLAS------SEYRHALESDIEPFKGLLLGLFFIAVGMSIDFGT--LLENPLRILILLLGFLAIKIAML 312 (621)
T ss_pred cHHHHHHHHHHHhcC------CccHHHHHHHHHHHHHHHHHHHHHHhhhhccHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555542 2333456777777778889999999999998753 22334445555666777778888
Q ss_pred HHHHHHhCCChHH-HHHH-HHHhccchhhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHH
Q 007420 538 AAASIAVGLRGVL-LHVA-IVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLV 597 (604)
Q Consensus 538 ~ll~~lLgLd~~~-~~Vl-VL~AAmPtAv~s~IlA~~YG~d~elAAs~VllSTLLSLpl~i~ 597 (604)
++.+++++.+... ..+. .+...-..+...+-++.+.|.=.+...+.+.+.+++|+.+.++
T Consensus 313 ~~~~~~~g~~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~~~~~lv~~v~lS~~~tP~ 374 (621)
T PRK03562 313 WLLARPLGVPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPEWAKLLTLAVALSMAATPL 374 (621)
T ss_pred HHHHHHhCCCHhHHHHHHHHHhccccHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888888887543 2222 2222345566666667777765555555555677777444333
No 24
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=90.01 E-value=3.9 Score=43.98 Aligned_cols=88 Identities=17% Similarity=0.257 Sum_probs=63.1
Q ss_pred HHhHHHHHHHHHhhhcccchhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhCCChH------HHHHHHHHhccch--hh
Q 007420 493 SDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMAAASIAVGLRGV------LLHVAIVQAALPQ--GI 564 (604)
Q Consensus 493 G~aaiPLALf~IG~sLa~~~~~~~~~~k~vl~iv~iKLIV~PLLa~ll~~lLgLd~~------~~~VlVL~AAmPt--Av 564 (604)
...-..+-+||.|.++..+. .....|+-...++.|+++.-++.+++.+++|.++. =...+.+.++|-. +.
T Consensus 47 ~~~iig~~l~~~Ga~I~~k~--~~~~lkkg~~ll~~K~~~~~~lgl~~~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~Ngg 124 (314)
T PF03812_consen 47 ANPIIGVFLFCMGAQIDLKS--AGKVLKKGGVLLLVKFIIGALLGLLVGKFFGPEGIQSGFFLGLSALAIIAAMTNSNGG 124 (314)
T ss_pred hHHHHHHHHHHhccccchhh--hhHHHHhhhHHHHHHHHHHHHHHHHHHHHcCccccccccccchHHHHHHHHHhcCCHH
Confidence 34455677899999999865 34556778888999999999999999999988763 2344455555544 34
Q ss_pred HHHHHHHHcCCChhHHHH
Q 007420 565 VPFVFAKEYNVHPDILST 582 (604)
Q Consensus 565 ~s~IlA~~YG~d~elAAs 582 (604)
.-.-+..+||-+.|.++-
T Consensus 125 LY~aL~~~yGd~~D~gA~ 142 (314)
T PF03812_consen 125 LYLALMGQYGDEEDVGAF 142 (314)
T ss_pred HHHHHHHHhCCHHHhHHH
Confidence 444567889887776543
No 25
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=89.33 E-value=0.94 Score=49.23 Aligned_cols=87 Identities=11% Similarity=0.053 Sum_probs=68.1
Q ss_pred HHHHHHHHHhhhhhccccChhH---HHHHHHHHHHHHhHHHHH-HHhhcCCCCCc----cHHHHHHHHHHHHHHHHHHHH
Q 007420 17 LYVAMILAYGSVKWWKIFTPDQ---CSGINRFVALFAVPLLSF-HFISSNDPYKM----NLRFIAADTLQKIIVLVVLAI 88 (604)
Q Consensus 17 IFlLI~LGyla~R~rg~~s~~~---~~~LnrFVf~~ALPALLF-~~IA~~dl~~l----~~~fl~ay~Lg~livfll~~l 88 (604)
...+|.+|.++... |+++++- ++..++|+.+..++++++ ..++.+|++++ .|+++.....+.+...+..++
T Consensus 207 ~v~mII~~vi~k~~-gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~vviiv~~Vlg~ii~s~l 285 (347)
T TIGR00783 207 YAFMILIAAALKAF-GLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQFVVICLSVVVAMILGGAF 285 (347)
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchhHhhhHHHHHHHHHHHHHH
Confidence 55677889999996 9999755 556677777777777777 58899999876 588888888888888888888
Q ss_pred HHHHhhcCCcccceeeee
Q 007420 89 WSKLSKRGCLEWTITLFS 106 (604)
Q Consensus 89 lar~~~r~~~~~~aaV~g 106 (604)
+.|+++-.|.| +++-+
T Consensus 286 vGKllG~YPiE--~aIta 301 (347)
T TIGR00783 286 LGKLMGMYPVE--SAITA 301 (347)
T ss_pred HHHHhCCChHH--HHHHH
Confidence 88888777777 44443
No 26
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=88.87 E-value=4.5 Score=43.86 Aligned_cols=90 Identities=9% Similarity=-0.011 Sum_probs=56.0
Q ss_pred hchHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHHHHHHHHHHHHHHHH
Q 007420 457 RNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAV 536 (604)
Q Consensus 457 kNPiIIAiILGLilsll~~~~gI~LP~~L~~~L~~LG~aaiPLALf~IG~sLa~~~~~~~~~~k~vl~iv~iKLIV~PLL 536 (604)
-+++++|+++|++++-. ...+.|+....-++...+...-++.+.+|..+...+.. .-.++- +.....=++..=++
T Consensus 31 l~~~~~AillG~~l~n~---~~~~~~~~~~~Gi~f~~k~lLr~gIVLlG~~l~~~~i~-~~G~~~-l~~~~~~v~~~~~~ 105 (335)
T TIGR00698 31 LSALFLAILLGMVAGNT---IYPQRDEEKKRGVLFAKPFLLRIGITLYGFRLTFPYIA-DVGPNE-IVADTLILTSTFFL 105 (335)
T ss_pred CcHHHHHHHHHHHHhcc---ccccchhhccchHHHHHHHHHHHHHHHHCccccHHHHH-HhhHHH-HHHHHHHHHHHHHH
Confidence 56778999999988743 01246777778888888999999999999999986521 222222 22222222222222
Q ss_pred HHHHH-HHhCCChHHH
Q 007420 537 MAAAS-IAVGLRGVLL 551 (604)
Q Consensus 537 a~ll~-~lLgLd~~~~ 551 (604)
.+.+. +.+++|+...
T Consensus 106 ~~~~g~k~l~l~~~~~ 121 (335)
T TIGR00698 106 TVFLGSSRLKLDKQMS 121 (335)
T ss_pred HHHHHHHHhCCChhHH
Confidence 23333 6788886643
No 27
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=88.20 E-value=18 Score=41.17 Aligned_cols=134 Identities=13% Similarity=0.062 Sum_probs=83.0
Q ss_pred chHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHHHHHHHHHHHHHHHHH
Q 007420 458 NPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVM 537 (604)
Q Consensus 458 NPiIIAiILGLilsll~~~~gI~LP~~L~~~L~~LG~aaiPLALf~IG~sLa~~~~~~~~~~k~vl~iv~iKLIV~PLLa 537 (604)
++.+=|.++|++++-. +....+.+....+.....|+-.+.+|+.+..... ...+..++..+++.++.-++.+
T Consensus 249 s~~lGAflaGl~l~~~------~~~~~~~~~~~~~~~~f~plFFv~~G~~~d~~~l--~~~~~~~~~~~~~~~v~K~~~~ 320 (558)
T PRK10669 249 SFALGAFFAGMVLNES------ELSHRAAHDTLPLRDAFAVLFFVSVGMLFDPMIL--IQQPLAVLATLAIIVFGKSLAA 320 (558)
T ss_pred cHHHHHHHHHHHHhCC------hhHHHHHHHHhhHHHHHHHHHHHHhhhhcCHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 5777777888886632 2333444334445677899999999999987531 1223334445566666667777
Q ss_pred HHHHHHhCCChH-HHHHHHHHh-ccchhhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHH
Q 007420 538 AAASIAVGLRGV-LLHVAIVQA-ALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYY 599 (604)
Q Consensus 538 ~ll~~lLgLd~~-~~~VlVL~A-AmPtAv~s~IlA~~YG~d~elAAs~VllSTLLSLpl~i~l~ 599 (604)
+..+..++.+.. ...+.+.++ -...+...+.++.++|.=.+...+.+.+.+++|..+.++++
T Consensus 321 ~~~~~~~g~~~~~a~~~gl~l~~~Gef~lii~~~~~~~gii~~~~~~~~v~~~~~t~~~~P~l~ 384 (558)
T PRK10669 321 FFLVRLFGHSRRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLF 384 (558)
T ss_pred HHHHHHhCCChhhHHHHHHHHhcccchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777776643 222222222 24566667777777887666666777888888854444443
No 28
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=88.11 E-value=24 Score=37.67 Aligned_cols=112 Identities=15% Similarity=0.200 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccccChhHHHHHHHHHHHHHhHHHHHHHhhcC----CCCCccHHHHHHHHHHHHHHHH-
Q 007420 10 VMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISSN----DPYKMNLRFIAADTLQKIIVLV- 84 (604)
Q Consensus 10 ILsiilPIFlLI~LGyla~R~rg~~s~~~~~~LnrFVf~~ALPALLF~~IA~~----dl~~l~~~fl~ay~Lg~livfl- 84 (604)
++.+++|. .+|-+++|+.+..-+. .+..-+.+-..++-.+++.+.++. -++++++.-++......+..++
T Consensus 164 ~~~vllP~----~~Gq~~r~~~~~~~~~-~~~~~~~~~~~~ll~iv~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 238 (313)
T PF13593_consen 164 VLTVLLPL----VLGQLLRRWVPKWVAR-HKKPLSLLSQLALLLIVYSAFSSAFAQGAWHSVSAAALALIVAVSLLLLLV 238 (313)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhCCHHHHHHHHHHHHHHHHH
Confidence 44455565 4566666641211111 344555667777777877777654 2334444333332222222222
Q ss_pred ---HHHHHHHHhhcCCcccceeeeeeccCCccccchHHHHhhhhccc
Q 007420 85 ---VLAIWSKLSKRGCLEWTITLFSVSTLPNTLVMGIPLLKGMYGEF 128 (604)
Q Consensus 85 ---l~~llar~~~r~~~~~~aaV~glasfsNtgfIGiPIl~alfG~~ 128 (604)
++++..|.++.++.|+ .-..+|+--.+.-+|+|+...+|++.
T Consensus 239 ~l~~~~~~~r~~~~~~~d~--iA~~F~gs~Ksl~~gvpl~~~lf~~~ 283 (313)
T PF13593_consen 239 VLVLGWLAARLLGFSRPDR--IAVLFCGSQKSLALGVPLASILFPGH 283 (313)
T ss_pred HHHHHHHHHhhcCCChhhE--EEEEEEcCcCcchhHHHHHHHHcccc
Confidence 2234455554444453 22223555778889999999999875
No 29
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=87.55 E-value=36 Score=34.78 Aligned_cols=93 Identities=17% Similarity=0.206 Sum_probs=57.7
Q ss_pred HHHHHHHHHhchHHHHHH-HHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHHHHHH
Q 007420 448 LIMVWRKLIRNPNTYSSL-IGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSM 526 (604)
Q Consensus 448 l~~vlkklLkNPiIIAiI-LGLilsll~~~~gI~LP~~L~~~L~~LG~aaiPLALf~IG~sLa~~~~~~~~~~k~vl~iv 526 (604)
...+.|+ ++.|.+.+.+ +|+++.-..+ |+--+. +.++.++.....+-||..|..+..+. .++..+......
T Consensus 7 ~~~l~~~-l~lP~~v~~il~GillGp~~l--g~i~~~---~~~~~l~~igl~~llF~~Gl~~d~~~--l~~~~~~~~~~~ 78 (273)
T TIGR00932 7 AVPLSRR-LGIPSVLGYLLAGVLIGPSGL--GLISNV---EGVNHLAEFGVILLMFLIGLELDLER--LWKLRKAAFGVG 78 (273)
T ss_pred HHHHHHH-hCCCHHHHHHHHHHHhCcccc--cCCCCh---HHHHHHHHHHHHHHHHHHHhCCCHHH--HHHHHHHHHHHH
Confidence 3455666 5777766654 5777653310 321122 46888999999999999999998754 345566666666
Q ss_pred HHHHHHHH-HHH-HHHHHHhCCChH
Q 007420 527 AVRFLTGP-AVM-AAASIAVGLRGV 549 (604)
Q Consensus 527 ~iKLIV~P-LLa-~ll~~lLgLd~~ 549 (604)
..-.+ .| +++ +.+.++++.+..
T Consensus 79 ~~~~~-~~~~~~~~~~~~~~~~~~~ 102 (273)
T TIGR00932 79 VLQVL-VPGVLLGLLLGHLLGLALG 102 (273)
T ss_pred HHHHH-HHHHHHHHHHHHHHCCCHH
Confidence 66644 45 333 334566776543
No 30
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=86.16 E-value=56 Score=35.65 Aligned_cols=115 Identities=16% Similarity=0.132 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHhhcCCC-CCcHH--HHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHHHHHHHHHHHHHHHH
Q 007420 460 NTYSSLIGLVWSLVSFRWNV-QMPAI--VAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAV 536 (604)
Q Consensus 460 iIIAiILGLilsll~~~~gI-~LP~~--L~~~L~~LG~aaiPLALf~IG~sLa~~~~~~~~~~k~vl~iv~iKLIV~PLL 536 (604)
.++..+.|+++.++ .+ ++|.. +.+.+ .-.-++++..++.+... ......+...++-++.+-++
T Consensus 250 ~v~vsi~gLi~aLt----Pf~~lpgs~elgtv~-----lY~~v~vias~Ad~~~i-----~taP~~i~~gf~il~~h~~v 315 (384)
T COG5505 250 LVLVSITGLIIALT----PFERLPGSQELGTVL-----LYLFVVVIASPADLRLI-----VTAPLIILFGFIILISHLAV 315 (384)
T ss_pred ehHHHHHHHHHHhC----ccccCCchhhhhHHH-----HHHHHHHhccchhHHHH-----HhhhHHHHHHHHHHHHHHHH
Confidence 35667888998888 33 25532 22222 12345556666655432 22344556677778888888
Q ss_pred HHHHHHHhCCChHHHHHHHHHhccchhhHHHHHHHHcCCChhHHHHHHHHHHHHH
Q 007420 537 MAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIA 591 (604)
Q Consensus 537 a~ll~~lLgLd~~~~~VlVL~AAmPtAv~s~IlA~~YG~d~elAAs~VllSTLLS 591 (604)
.+...++|.+|-....++.+.- .--.+.+.++|..|| +++++-.++..|+-.
T Consensus 316 ~f~~~KlF~~dL~~i~~AslAn-iGG~~sAp~~A~A~n--r~lv~~gvlmg~lG~ 367 (384)
T COG5505 316 SFAAGKLFRVDLEEILLASLAN-IGGPTSAPAMAIAKN--RELVAPGVLMGTLGY 367 (384)
T ss_pred HHHHHHHHHhHHHHHHHHHHhc-cCCccchhHHHhhcC--chhcchHHHHHHHHH
Confidence 9999999988877666555432 333456778888888 789999999988855
No 31
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=84.95 E-value=2.5 Score=45.43 Aligned_cols=87 Identities=14% Similarity=0.148 Sum_probs=59.6
Q ss_pred hHHHHHHHHHhhhcccchhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhCCChHH-HHHHHHHhccch--hhHHHHHHH
Q 007420 495 AGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMAAASIAVGLRGVL-LHVAIVQAALPQ--GIVPFVFAK 571 (604)
Q Consensus 495 aaiPLALf~IG~sLa~~~~~~~~~~k~vl~iv~iKLIV~PLLa~ll~~lLgLd~~~-~~VlVL~AAmPt--Av~s~IlA~ 571 (604)
.-..+=+||.|.++..+. .....++-......|.++.-++.+.+..++|-++.. ...+.+.++|=. +..-.-+..
T Consensus 49 ~il~~~~~~~Ga~I~~k~--~~~~l~kg~~l~~~K~~~~~~~g~~~~~~~g~~g~~Gls~laiiaa~~~~Ng~ly~al~~ 126 (312)
T PRK12460 49 PLLGAFLLCMGAQISLKA--APQALLKGGVLTITKLGVAIVIGLLVGKFFGAEGIFGLSGLAIVAAMSNSNGGLYAALMG 126 (312)
T ss_pred HHHHHHHHHhcCeeeccc--cchhhhhhhhhhhHHHHHHHHHHHHHHHHcCcccccchHHHHHHHHHhcCcHHHHHHHHH
Confidence 445567899999999864 234566777888999999999999999999877653 333444444432 223333488
Q ss_pred HcCCChhHHHHH
Q 007420 572 EYNVHPDILSTG 583 (604)
Q Consensus 572 ~YG~d~elAAs~ 583 (604)
|||-++|..+..
T Consensus 127 ~yG~~~d~gA~~ 138 (312)
T PRK12460 127 EFGDERDVGAIS 138 (312)
T ss_pred HcCCHhhhhHHh
Confidence 999877765443
No 32
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=82.24 E-value=1.5 Score=48.13 Aligned_cols=107 Identities=19% Similarity=0.163 Sum_probs=73.1
Q ss_pred HHHHHHHHHhhhcccchhhh-hcchhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHH-HHHHHHhccchhhHHHHHHHHc
Q 007420 496 GLGMAMFSLGLFMALQPRII-ACGNSIAAFSMAVRFLTGPAVMAAASIAVGLRGVLL-HVAIVQAALPQGIVPFVFAKEY 573 (604)
Q Consensus 496 aiPLALf~IG~sLa~~~~~~-~~~~k~vl~iv~iKLIV~PLLa~ll~~lLgLd~~~~-~VlVL~AAmPtAv~s~IlA~~Y 573 (604)
..-.-++++|+.+....... ...........+.+++++|+..+.+...+.++..+. ..++..+..|.+..+++.+..-
T Consensus 118 gl~~~~ls~g~~~~~~~~~~~~~rP~~~~lG~v~q~~i~pl~~f~~~~~~~lP~~~~ag~~Lvtc~~p~g~~~~~~~~~~ 197 (371)
T KOG2718|consen 118 GLLSNMLSFGIKLDMDLFAGMIKRPTPLALGFVPQYLIMPLLGFLLSKVLLLPAALAAGLLLVTCVSPGGGGNYLTSKRL 197 (371)
T ss_pred HHHHHHHHHhcCccHHHHhhHhhCCcceeehHHHHHHHHHHHHHhhhhHhhCCccccceeEEEEeccCCcchhhheeecC
Confidence 34456778888887654211 112233445556699999999999888888887774 4444444556677777777766
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHh
Q 007420 574 NVHPDILSTGVIFGMLIALPITLVYYILL 602 (604)
Q Consensus 574 G~d~elAAs~VllSTLLSLpl~i~l~lLL 602 (604)
+.|..++.....++|+.++.+++.+-.++
T Consensus 198 ~g~v~lsilmT~~stv~avi~~pl~s~~l 226 (371)
T KOG2718|consen 198 PGDVTLSILMTTISTVLAVILTPLLSILL 226 (371)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88888888888888888866666655544
No 33
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=81.90 E-value=29 Score=38.24 Aligned_cols=129 Identities=17% Similarity=0.194 Sum_probs=73.7
Q ss_pred HHHhchHHHHHHH-HHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHHHHHHHHHHHH
Q 007420 454 KLIRNPNTYSSLI-GLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLT 532 (604)
Q Consensus 454 klLkNPiIIAiIL-GLilsll~~~~gI~LP~~L~~~L~~LG~aaiPLALf~IG~sLa~~~~~~~~~~k~vl~iv~iKLIV 532 (604)
+-++-|.+++.++ |+++.-. +.-.+..-.+.++.++....-+-||.+|...+..+. ++..+.+......-.+.
T Consensus 26 ~rl~lp~vlg~llaGiilGp~----~~~~~~~~~~~i~~laelGvi~LlF~~GLE~~~~~l--~~~~~~~~~~~~~~~~~ 99 (397)
T COG0475 26 KRLGLPPVLGYLLAGIILGPW----GLLLIIESSEIIELLAELGVVFLLFLIGLEFDLERL--KKVGRSVGLGVAQVGLT 99 (397)
T ss_pred HHcCCchHHHHHHHHHhcCcc----cccccCCchHHHHHHHHHhHHHHHHHHHHCcCHHHH--HHhchhhhhhHHHHHHH
Confidence 4468888888775 4444422 333444556778888899999999999999998652 33334424444455566
Q ss_pred HHHHHHHH-HH-HhCCChHHHHHHHHHhccch-hhHHHHHHHHcCCChhHHHHHHHHHHH
Q 007420 533 GPAVMAAA-SI-AVGLRGVLLHVAIVQAALPQ-GIVPFVFAKEYNVHPDILSTGVIFGML 589 (604)
Q Consensus 533 ~PLLa~ll-~~-lLgLd~~~~~VlVL~AAmPt-Av~s~IlA~~YG~d~elAAs~VllSTL 589 (604)
.|.+.... .. .++++....-.+-...++.+ +...-++. ++|...+...+.++...+
T Consensus 100 ~~~~l~~~~~~~~~g~~~~~al~lg~~l~~sS~~i~~~iL~-e~~~~~~~~g~~~l~~~i 158 (397)
T COG0475 100 APFLLGLLLLLGILGLSLIAALFLGAALALSSTAIVLKILM-ELGLLKTREGQLILGALV 158 (397)
T ss_pred HHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHH-HhccccchHHHHHHHHHH
Confidence 66444332 22 37777654333333333333 44455544 455544444444444443
No 34
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=81.65 E-value=11 Score=40.59 Aligned_cols=81 Identities=16% Similarity=0.178 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHHHHHHHHHHHHHHHHHHH
Q 007420 460 NTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMAA 539 (604)
Q Consensus 460 iIIAiILGLilsll~~~~gI~LP~~L~~~L~~LG~aaiPLALf~IG~sLa~~~~~~~~~~k~vl~iv~iKLIV~PLLa~l 539 (604)
.++++++|+++.-+ .-++|+.+...... .+|+.-|.+|..++.... ....+.-++..+++ .++.=.+.+.
T Consensus 169 lilpILiGmilGNl----d~~~~~~l~~Gi~f----~I~f~~f~LG~~lnl~~I-~~~G~~GIlL~v~v-v~~t~~~~~~ 238 (312)
T PRK12460 169 ALLPLVLGMILGNL----DPDMRKFLTKGGPL----LIPFFAFALGAGINLSML-LQAGLAGILLGVLV-TIVTGFFNIF 238 (312)
T ss_pred HHHHHHHHHHHhcc----chhhHHHHhccceE----eHHHHHHHhcCCeeHHHH-HHhChHHHHHHHHH-HHHHHHHHHH
Confidence 67788888887654 33467777666654 889999999999998752 23333333333322 2333344555
Q ss_pred HHHHhCCChHH
Q 007420 540 ASIAVGLRGVL 550 (604)
Q Consensus 540 l~~lLgLd~~~ 550 (604)
+.++++.|+..
T Consensus 239 i~rllg~~~~~ 249 (312)
T PRK12460 239 ADRLVGGTGIA 249 (312)
T ss_pred HHHHhCCChhH
Confidence 55777877664
No 35
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=81.23 E-value=42 Score=40.68 Aligned_cols=88 Identities=15% Similarity=0.079 Sum_probs=55.4
Q ss_pred HHHhchHHHHHHHHHHHHHHhhcCCCCCcHHH-----HHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHHHHHHHH
Q 007420 454 KLIRNPNTYSSLIGLVWSLVSFRWNVQMPAIV-----AKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAV 528 (604)
Q Consensus 454 klLkNPiIIAiILGLilsll~~~~gI~LP~~L-----~~~L~~LG~aaiPLALf~IG~sLa~~~~~~~~~~k~vl~iv~i 528 (604)
++--..+++.+++|+++... +..+..+. ....-.+...++++.||..|..|.... .++.|+.++.+++.
T Consensus 35 Rl~Ls~~~v~Ll~GiilGP~----~l~~idP~~~g~~d~i~leIteIvL~I~LFa~Gl~L~~~~--Lrr~wrsV~rLl~~ 108 (810)
T TIGR00844 35 KLYIGESMVASIFGLIVGPH----CLNWFNPLSWGNTDSITLEISRILLCLQVFAVSVELPRKY--MLKHWVSVTMLLVP 108 (810)
T ss_pred hcCCcHHHHHHHHHHHhhhh----hhccCChhhcccchHHHHHHHHHHHHHHHHHHHHhCCHHH--HHHhHHHHHHHHHH
Confidence 33345678889999998866 44333332 222233788899999999999998754 45667766666555
Q ss_pred HHHHHHHHHHHHHH-H-hCCC
Q 007420 529 RFLTGPAVMAAASI-A-VGLR 547 (604)
Q Consensus 529 KLIV~PLLa~ll~~-l-LgLd 547 (604)
=+.+.=+++.++++ + ++++
T Consensus 109 ~M~lT~livAL~a~~Li~GL~ 129 (810)
T TIGR00844 109 VMTSGWLVIALFVWILVPGLN 129 (810)
T ss_pred HHHHHHHHHHHHHHHHHcCCC
Confidence 55444444444443 3 3565
No 36
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=80.98 E-value=3.7 Score=44.08 Aligned_cols=87 Identities=16% Similarity=0.093 Sum_probs=58.5
Q ss_pred hHHHHHHHHHhhhcccchhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhCCCh-----H-HHHHHHHHhccch--hhHH
Q 007420 495 AGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMAAASIAVGLRG-----V-LLHVAIVQAALPQ--GIVP 566 (604)
Q Consensus 495 aaiPLALf~IG~sLa~~~~~~~~~~k~vl~iv~iKLIV~PLLa~ll~~lLgLd~-----~-~~~VlVL~AAmPt--Av~s 566 (604)
.-..+=++|.|.++..+. .....++-......|.++.-++.+++..++|-++ . =...+.+.++|=. +..-
T Consensus 49 ~il~~~l~~~Ga~I~~k~--~g~~l~kg~~l~~~K~~i~~~~g~~~~~~~g~~Gi~~g~~~GlS~LAiiaA~~nsNggLY 126 (314)
T TIGR00793 49 PILAVWFFCMGASIDLSA--TGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEDGVEVGFFAGLSTLALVAAMDMTNGGLY 126 (314)
T ss_pred HHHHHHHHHhCCeeeecc--cchhhhhcceeeeHHHHHHHHHHHHHHHHcCcCCccccceeccHHHHHHHHHhCCcHHHH
Confidence 344566899999999864 2344566667788999999999999999999776 2 1333444445432 2233
Q ss_pred HHHHHHcCCChhHHHHH
Q 007420 567 FVFAKEYNVHPDILSTG 583 (604)
Q Consensus 567 ~IlA~~YG~d~elAAs~ 583 (604)
.-++.|||-++|..+..
T Consensus 127 ~aL~~qyGd~~D~gA~~ 143 (314)
T TIGR00793 127 ASIMQQYGTKEEAGAFV 143 (314)
T ss_pred HHHHHHcCCHhhhhhhh
Confidence 33488999887765443
No 37
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=78.20 E-value=56 Score=38.13 Aligned_cols=116 Identities=14% Similarity=0.137 Sum_probs=69.0
Q ss_pred HHHHHHHHhchHHHHHHH-HHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHHHHHHH
Q 007420 449 IMVWRKLIRNPNTYSSLI-GLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMA 527 (604)
Q Consensus 449 ~~vlkklLkNPiIIAiIL-GLilsll~~~~gI~LP~~L~~~L~~LG~aaiPLALf~IG~sLa~~~~~~~~~~k~vl~iv~ 527 (604)
..+.|+ ++.|.+++.++ |+++.-.++ |+- ++ .+.+..++...+.+-||.+|..++... .++..+.++....
T Consensus 21 ~~l~~r-l~lp~vlgyilaGillGP~~l--g~i-~~--~~~i~~laelGvv~LlF~iGLEl~~~~--l~~~~~~~~~~g~ 92 (621)
T PRK03562 21 VPIAVR-LGLGSVLGYLIAGCIIGPWGL--RLV-TD--VESILHFAEFGVVLMLFVIGLELDPQR--LWKLRRSIFGGGA 92 (621)
T ss_pred HHHHHH-hCCChHHHHHHHHHHhCcccc--cCC-CC--HHHHHHHHHHHHHHHHHHHHhCcCHHH--HHHHHHHHHHHHH
Confidence 344554 68898888764 666553311 321 21 234778999999999999999998765 2334455555555
Q ss_pred HHHHHHHHHHHHHHHHhCCChHHHH-HHHHHhccchhhHHHHHHHH
Q 007420 528 VRFLTGPAVMAAASIAVGLRGVLLH-VAIVQAALPQGIVPFVFAKE 572 (604)
Q Consensus 528 iKLIV~PLLa~ll~~lLgLd~~~~~-VlVL~AAmPtAv~s~IlA~~ 572 (604)
.-+++.-++.+.+++++|.+..... +...++...+++..-++.++
T Consensus 93 ~qv~~~~~~~~~~~~~~g~~~~~al~ig~~la~SStaiv~~~L~e~ 138 (621)
T PRK03562 93 LQMVACGGLLGLFCMLLGLRWQVALLIGLGLALSSTAIAMQAMNER 138 (621)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6655554555555677777654322 22333334456655566654
No 38
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=77.97 E-value=68 Score=37.26 Aligned_cols=114 Identities=14% Similarity=0.059 Sum_probs=65.0
Q ss_pred HHHHHHhchHHHHHH-HHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHHHHHHHHH
Q 007420 451 VWRKLIRNPNTYSSL-IGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVR 529 (604)
Q Consensus 451 vlkklLkNPiIIAiI-LGLilsll~~~~gI~LP~~L~~~L~~LG~aaiPLALf~IG~sLa~~~~~~~~~~k~vl~iv~iK 529 (604)
+.++ ++-|.+++.+ +|+++.-.+ +|+ +++ .+.+..++.....+-||.+|+.++..+. ++..+.++.....-
T Consensus 23 l~~r-l~~p~ilg~ilaGillGP~~--lg~-i~~--~~~i~~laelGvv~LLF~iGLel~~~~l--~~~~~~~~~~g~~~ 94 (601)
T PRK03659 23 LAQR-LGIGAVLGYLLAGIAIGPWG--LGF-ISD--VDEILHFSELGVVFLMFIIGLELNPSKL--WQLRRSIFGVGAAQ 94 (601)
T ss_pred HHHH-hCCChHHHHHHHHHHhcccc--ccC-CCc--HHHHHHHHHHHHHHHHHHHHhcCCHHHH--HHHHHHHHHHHHHH
Confidence 4444 6888888876 466654320 032 121 1346688999999999999999998652 33344555555555
Q ss_pred HHHHHHHHHHHHHHhCCChHHHH-HHHHHhccchhhHHHHHHHH
Q 007420 530 FLTGPAVMAAASIAVGLRGVLLH-VAIVQAALPQGIVPFVFAKE 572 (604)
Q Consensus 530 LIV~PLLa~ll~~lLgLd~~~~~-VlVL~AAmPtAv~s~IlA~~ 572 (604)
+++.-+++..+.++++++..... +.+..+...+++..-++.++
T Consensus 95 v~~t~~~~~~~~~~~g~~~~~a~~~g~~la~SSTaiv~~iL~e~ 138 (601)
T PRK03659 95 VLLSAAVLAGLLMLTDFSWQAAVVGGIGLAMSSTAMALQLMREK 138 (601)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44433344444556677643222 22223344556655666554
No 39
>PRK05326 potassium/proton antiporter; Reviewed
Probab=77.28 E-value=42 Score=38.41 Aligned_cols=93 Identities=15% Similarity=0.078 Sum_probs=56.3
Q ss_pred HHHHHHHHhchHHHHHH-HHHHHHHHhhcCCCC-CcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHHHHHH
Q 007420 449 IMVWRKLIRNPNTYSSL-IGLVWSLVSFRWNVQ-MPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSM 526 (604)
Q Consensus 449 ~~vlkklLkNPiIIAiI-LGLilsll~~~~gI~-LP~~L~~~L~~LG~aaiPLALf~IG~sLa~~~~~~~~~~k~vl~iv 526 (604)
....++ ++-|.+++.+ +|+++.-. ++. ++..-.+..+.++..+.++.||..|..+.... .++.++.++...
T Consensus 22 ~~l~~r-~~~P~ll~~il~GillGp~----~lg~i~~~~~~~~~~i~~l~L~~iLF~~Gl~~~~~~--l~~~~~~~~~la 94 (562)
T PRK05326 22 SRLSSR-LGIPSLLLFLAIGMLAGED----GLGGIQFDNYPLAYLVGNLALAVILFDGGLRTRWSS--FRPALGPALSLA 94 (562)
T ss_pred HHHHHH-cCCcHHHHHHHHHHHhCcc----ccCCcccCcHHHHHHHHHHHHHHHHHcCccCCCHHH--HHHHHHHHHHHH
Confidence 344554 4777766654 67776654 222 11111256788999999999999999998764 345566666555
Q ss_pred HHHHHHHHHHH--HHHHHHhCCChH
Q 007420 527 AVRFLTGPAVM--AAASIAVGLRGV 549 (604)
Q Consensus 527 ~iKLIV~PLLa--~ll~~lLgLd~~ 549 (604)
..-.++ |.+. +...++++++..
T Consensus 95 ~~gv~~-t~~~~g~~~~~l~g~~~~ 118 (562)
T PRK05326 95 TLGVLI-TAGLTGLFAHWLLGLDWL 118 (562)
T ss_pred HHHHHH-HHHHHHHHHHHHhcCCHH
Confidence 555433 4433 333456777543
No 40
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=75.25 E-value=92 Score=35.58 Aligned_cols=115 Identities=16% Similarity=0.142 Sum_probs=62.2
Q ss_pred HHHHHHHHhchHHHHHH-HHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHHHHHHH
Q 007420 449 IMVWRKLIRNPNTYSSL-IGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMA 527 (604)
Q Consensus 449 ~~vlkklLkNPiIIAiI-LGLilsll~~~~gI~LP~~L~~~L~~LG~aaiPLALf~IG~sLa~~~~~~~~~~k~vl~iv~ 527 (604)
..+.|+ ++.|.+++.+ +|+++.-.+ +|+ +++ .+.++.++....-+-||.+|..+..... ++..+..+....
T Consensus 22 ~~l~~r-l~~P~ivg~IlaGillGp~~--lg~-~~~--~~~~~~la~lGli~llF~~Gle~d~~~l--~~~~~~~~~~~~ 93 (558)
T PRK10669 22 GMLANR-LRISPLVGYLLAGVLAGPFT--PGF-VAD--TKLAPELAELGVILLMFGVGLHFSLKDL--MAVKSIAIPGAI 93 (558)
T ss_pred HHHHHH-cCCCHHHHHHHHHHhhCccc--ccc-ccc--hHHHHHHHHHHHHHHHHHhHhcCCHHHH--HHHhhHHHHHHH
Confidence 344444 6888888865 555554320 122 111 2457789999999999999999997542 222233333444
Q ss_pred HHHHHHHHHHHHHHHHhCCChHHH-HHHHHHhccchhhHHHHHHH
Q 007420 528 VRFLTGPAVMAAASIAVGLRGVLL-HVAIVQAALPQGIVPFVFAK 571 (604)
Q Consensus 528 iKLIV~PLLa~ll~~lLgLd~~~~-~VlVL~AAmPtAv~s~IlA~ 571 (604)
..+++.-++.+++.+.++.+.... ...+.++...+++..-++.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~al~lg~~ls~tS~~vv~~~L~e 138 (558)
T PRK10669 94 AQIAVATLLGMALSAVLGWSLMTGIVFGLCLSTASTVVLLRALEE 138 (558)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 454444344455556677653322 22223333334444444443
No 41
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=72.80 E-value=43 Score=36.04 Aligned_cols=116 Identities=17% Similarity=0.078 Sum_probs=74.9
Q ss_pred HHHH-HHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHHH---HHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHh
Q 007420 483 AIVA-KSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAA---FSMAVRFLTGPAVMAAASIAVGLRGVLLHVAIVQA 558 (604)
Q Consensus 483 ~~L~-~~L~~LG~aaiPLALf~IG~sLa~~~~~~~~~~k~vl---~iv~iKLIV~PLLa~ll~~lLgLd~~~~~VlVL~A 558 (604)
+... +....++..+....++.+-................+. ..+++=.++.-.+.+.+.+.++++......+.++.
T Consensus 205 ~~~~~~~~~~~~~~~~l~l~~iv~~~~~~~~~~i~~~~~~i~~~~~~v~l~~~~~~~lg~~~~r~~~l~~~~~~a~~~e~ 284 (328)
T TIGR00832 205 EWYEKVFLPKISPWSLIALLFTIVLLFAFQGETIIELPLDIALIAIPLLIYFYIMFFLTFALAKKLGLPYSITAPAAFTG 284 (328)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChhhhhhheehh
Confidence 4444 4545555555544444444444333222222222222 23445666667777877888999999999999999
Q ss_pred ccchhhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHH
Q 007420 559 ALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVY 598 (604)
Q Consensus 559 AmPtAv~s~IlA~~YG~d~elAAs~VllSTLLSLpl~i~l 598 (604)
++=-+..+..+|..+=.+.+.++.......++=+|.+..+
T Consensus 285 g~qN~~lai~lA~~~f~~~~~~a~~~~~~~l~e~~~~~~~ 324 (328)
T TIGR00832 285 ASNNFELAIAVAISLFGLNSGAALATVVGPLIEVPVMLSL 324 (328)
T ss_pred hhhhHHHHHHHHHHhCCCCcccHHHHHhhhhhehhhhhee
Confidence 9988888888888875556778888888887777776543
No 42
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=72.12 E-value=90 Score=33.97 Aligned_cols=126 Identities=13% Similarity=0.160 Sum_probs=67.9
Q ss_pred HHHH-HHHHHHHHHHHHHHHHhhhhhccccChhHHHHHHHH---HHHHHhHHHHHHHhhcCCCCCc-cHHH--HHHHHHH
Q 007420 6 DFYH-VMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRF---VALFAVPLLSFHFISSNDPYKM-NLRF--IAADTLQ 78 (604)
Q Consensus 6 ~Ml~-ILsiilPIFlLI~LGyla~R~rg~~s~~~~~~LnrF---Vf~~ALPALLF~~IA~~dl~~l-~~~f--l~ay~Lg 78 (604)
.|.+ ++.+++|++ +|-+++++ ++ +..+.+-+. +-..++=+.++...+. ..++. ...+ +.+..+=
T Consensus 162 m~~~i~~~vllP~~----LG~~~r~~---~~-~~~~~~~~~l~~vs~~~illIv~~~~s~-~~~~~~~~~~~v~~~v~~~ 232 (319)
T COG0385 162 MFLSILLQVLLPFV----LGQLLRPL---LP-KWVERLKKALPPVSVLSILLIVYAAFSA-AVENGIWSGLLIFVAVILH 232 (319)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHH---HH-HHHHHHhhhcchhhHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHH
Confidence 3444 334555654 56666553 22 334443333 3344444444554444 33343 3333 2222223
Q ss_pred HHHHHHHHHHHHHHhhcCCcccceeeeee-ccCCccccchHHHHhhhhc-cchhhHHHHHHHHHHHH
Q 007420 79 KIIVLVVLAIWSKLSKRGCLEWTITLFSV-STLPNTLVMGIPLLKGMYG-EFSGSLMVQIVVLQCII 143 (604)
Q Consensus 79 ~livfll~~llar~~~r~~~~~~aaV~gl-asfsNtgfIGiPIl~alfG-~~a~~~valiv~v~~lI 143 (604)
-++.|.++++.+|+++.++.|+ -..++ ++.-|.+ .|.|+...-++ +..+.|.++...+|++.
T Consensus 233 n~lg~~~gy~~ar~~g~~~a~~--iti~ie~g~qn~~-lg~alA~~f~~~~~~alP~aif~~~q~~~ 296 (319)
T COG0385 233 NLLGLLLGYFGARLLGFDKADE--ITIAIEGGMQNLG-LGAALAAAFFGNPLMALPLAIFSVWQNMS 296 (319)
T ss_pred HHHHHHHHHHHHHHhCCChhhe--eeEEEeeccccHH-HHHHHHHhcCCCchhHhHHHHHHHHHHHH
Confidence 3455666777788776654442 33445 3556654 79999999556 56677777777777665
No 43
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=72.11 E-value=45 Score=36.51 Aligned_cols=147 Identities=12% Similarity=0.078 Sum_probs=77.0
Q ss_pred CChHHHHH--HHHHHHHHHHHHHHHHhhhhhccccChhHHHHHHHHHHHHHhHHHHHHHhhcCCCC--Cc--cHHHHHHH
Q 007420 2 ITLADFYH--VMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISSNDPY--KM--NLRFIAAD 75 (604)
Q Consensus 2 i~~~~Ml~--ILsiilPIFlLI~LGyla~R~rg~~s~~~~~~LnrFVf~~ALPALLF~~IA~~dl~--~l--~~~fl~ay 75 (604)
++|+.... ++-+.+|..+=+..=|...|+ +-- +-..+..-...--+++++|++.-+.=-.+. .+ ++.-++-.
T Consensus 172 v~~~~i~~Sv~lyl~iPli~G~lTR~i~~k~-kg~-~~~~~~f~p~ispi~ligLl~TivliF~~qg~~Iv~~p~~i~li 249 (342)
T COG0798 172 VPFWTIAKSVLLYLGIPLIAGVLTRYILIKK-KGR-EWYESRFLPKISPIALIGLLLTIVLIFAFQGEQIVEQPLDILLI 249 (342)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccc-hHHHHHHHhhcChHHHHHHHHHHHHHHHHhHHHHHhChHHHHHH
Confidence 34555544 445677887777777777774 322 223334444445577888777654322222 12 33322222
Q ss_pred HHHHH----HHHHHHHHHHHHhhcCCcccceeeeeeccCCccccchHHHHhhhhccchhhHHHHHHHHHHHHHHHHHHHH
Q 007420 76 TLQKI----IVLVVLAIWSKLSKRGCLEWTITLFSVSTLPNTLVMGIPLLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFM 151 (604)
Q Consensus 76 ~Lg~l----ivfll~~llar~~~r~~~~~~aaV~glasfsNtgfIGiPIl~alfG~~a~~~valiv~v~~lIl~pl~lvL 151 (604)
++..+ +.|.+.++++|..+-+-.+ ++-.++.+-||..-+.+++...+||-.+...++ ..+..++-.|+.+.+
T Consensus 250 AIpl~iy~~~~~~i~~~i~k~lgl~y~~--~~~~~ft~aSNnfeLAiAvAi~lfG~~s~aA~a--~vigpLvEVpvml~l 325 (342)
T COG0798 250 AIPLLIYFLLMFFISYFIAKALGLPYED--AAALVFTGASNNFELAIAVAIALFGLTSGAALA--TVVGPLVEVPVMLGL 325 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChhh--hhceeeeeccccHHHHHHHHHHhcCccccchhh--hhccchhhHHHHHHH
Confidence 22222 3334444455544332223 344455567999999999999999943322222 223334445555555
Q ss_pred HHH
Q 007420 152 FEY 154 (604)
Q Consensus 152 mE~ 154 (604)
.+.
T Consensus 326 V~v 328 (342)
T COG0798 326 VKV 328 (342)
T ss_pred HHH
Confidence 554
No 44
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=70.78 E-value=1e+02 Score=29.55 Aligned_cols=121 Identities=14% Similarity=0.106 Sum_probs=65.0
Q ss_pred HHHhch--HHHH-HHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhh-hcchhHHHHHHHHH
Q 007420 454 KLIRNP--NTYS-SLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRII-ACGNSIAAFSMAVR 529 (604)
Q Consensus 454 klLkNP--iIIA-iILGLilsll~~~~gI~LP~~L~~~L~~LG~aaiPLALf~IG~sLa~~~~~~-~~~~k~vl~iv~iK 529 (604)
+.++-| .+++ ++++.+++..+ ....++|.++.+..+.+-. ..+|..+....... ++.+...+..+..=
T Consensus 15 ~~l~~Pa~~llG~mi~~~~~~~~~-~~~~~~P~~~~~~~qviiG-------~~iG~~f~~~~l~~~~~~~~~~l~~~~~~ 86 (156)
T TIGR03082 15 SLLGLPAAWLLGPLLAGAVLSLAG-GLEITLPPWLLALAQVVIG-------ILIGSRFTREVLAELKRLWPAALLSTVLL 86 (156)
T ss_pred HHHCCCcHHHHHHHHHHHHHHhcC-CccCCCCHHHHHHHHHHHH-------HHHHccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 344555 3443 34455555551 0135688877766654433 34566666543111 11222223333333
Q ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHhccchhhHH-HHHHHHcCCChhHHHHHHHH
Q 007420 530 FLTGPAVMAAASIAVGLRGVLLHVAIVQAALPQGIVP-FVFAKEYNVHPDILSTGVIF 586 (604)
Q Consensus 530 LIV~PLLa~ll~~lLgLd~~~~~VlVL~AAmPtAv~s-~IlA~~YG~d~elAAs~Vll 586 (604)
+++.=...+.+.++.+.|... .+++++|-+... .++|+++|.|+..++..=.+
T Consensus 87 l~~~~~~~~~l~~~~~~~~~t----a~La~~PGGl~~m~~~A~~~gad~~~V~~~q~~ 140 (156)
T TIGR03082 87 LALSALLAWLLARLTGVDPLT----AFLATSPGGASEMAALAAELGADVAFVAAMQTL 140 (156)
T ss_pred HHHHHHHHHHHHHHHCCCHHH----HHHHhCCchHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 334334445555666776543 357789987665 45689999998877655443
No 45
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=68.07 E-value=1.5e+02 Score=36.07 Aligned_cols=84 Identities=18% Similarity=0.220 Sum_probs=51.6
Q ss_pred HhchHHHHHH-HHHHHHHHhhcCCCC-------CcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHHHHHHH
Q 007420 456 IRNPNTYSSL-IGLVWSLVSFRWNVQ-------MPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMA 527 (604)
Q Consensus 456 LkNPiIIAiI-LGLilsll~~~~gI~-------LP~~L~~~L~~LG~aaiPLALf~IG~sLa~~~~~~~~~~k~vl~iv~ 527 (604)
++.|.+++-+ +|+++.-.++ |.- +|.--...++.++....-+-||.+|+.+.... .++..+..+.+.+
T Consensus 65 l~~P~ivgeIlaGIlLGPs~l--g~i~~~~~~~fp~~~~~~l~~la~lGlillmFliGLE~Dl~~--lr~~~k~a~~ia~ 140 (832)
T PLN03159 65 FRQPRVISEILGGVILGPSVL--GQSEVFANTIFPLRSVMVLETMANLGLLYFLFLVGVEMDISV--IRRTGKKALAIAI 140 (832)
T ss_pred cCCChhHHHHHHHHhcCHhhh--CcChhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHH--HHhcchHHHHHHH
Confidence 5888888765 5666543211 321 23333357899999999999999999999754 3445555555555
Q ss_pred HHHHHHHHHH-HHHHHHh
Q 007420 528 VRFLTGPAVM-AAASIAV 544 (604)
Q Consensus 528 iKLIV~PLLa-~ll~~lL 544 (604)
.-+ +.|+++ +.+.+++
T Consensus 141 ~~~-ilpf~lg~~~~~~l 157 (832)
T PLN03159 141 AGM-ALPFCIGLAFSFIF 157 (832)
T ss_pred HHH-HHHHHHHHHHHHHH
Confidence 554 446543 3333433
No 46
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=65.18 E-value=20 Score=40.14 Aligned_cols=97 Identities=12% Similarity=0.064 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhhccccC---hhHHHHHHHHHHHHHhHHHHHH-HhhcCCCCCc----cHHHHHHHHHHHHHHHHHH
Q 007420 15 VPLYVAMILAYGSVKWWKIFT---PDQCSGINRFVALFAVPLLSFH-FISSNDPYKM----NLRFIAADTLQKIIVLVVL 86 (604)
Q Consensus 15 lPIFlLI~LGyla~R~rg~~s---~~~~~~LnrFVf~~ALPALLF~-~IA~~dl~~l----~~~fl~ay~Lg~livfll~ 86 (604)
+|-+..+.+=....|..++++ ++.++..++|+.+--.|++++- .++-+|++++ ++.++.......+.+.+..
T Consensus 271 ih~~a~mIi~~~i~K~~~lvP~~~e~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t~~~vv~~~~~Vl~~~~~a 350 (414)
T PF03390_consen 271 IHAYAWMIILVAIVKAFGLVPESLEEGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAFTPQYVVIVLATVLGAVIGA 350 (414)
T ss_pred CcHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHhCHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhcCCcccceeeeeec-cCCccc
Q 007420 87 AIWSKLSKRGCLEWTITLFSVS-TLPNTL 114 (604)
Q Consensus 87 ~llar~~~r~~~~~~aaV~gla-sfsNtg 114 (604)
+++.|+++-.+.| +++-+ + +.+|.+
T Consensus 351 ~~vG~l~g~YPvE--sAIta-GLC~an~G 376 (414)
T PF03390_consen 351 FLVGKLVGFYPVE--SAITA-GLCMANMG 376 (414)
T ss_pred HHHHHHhCCChHH--HHHHh-hhcccCCC
No 47
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=59.79 E-value=2.7e+02 Score=30.56 Aligned_cols=104 Identities=13% Similarity=0.060 Sum_probs=56.1
Q ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHhhcCCCCC-cHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHHHHHH
Q 007420 448 LIMVWRKLIRNPNTYSSLIGLVWSLVSFRWNVQM-PAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSM 526 (604)
Q Consensus 448 l~~vlkklLkNPiIIAiILGLilsll~~~~gI~L-P~~L~~~L~~LG~aaiPLALf~IG~sLa~~~~~~~~~~k~vl~iv 526 (604)
.++++++.++|+-++..+-|+++.+..-..+++- -.+..+..+ - -|++|.+-+-+.--++. +.+|+.-.-.
T Consensus 167 ~~~~l~E~l~~~sv~LLlGgliIG~~~g~~g~~~i~pf~~~lF~----G--~L~lFLLeMGl~A~~rL--~~l~~~g~~l 238 (327)
T PF05982_consen 167 WGELLHESLTNKSVVLLLGGLIIGFLAGPEGVESIKPFFVDLFK----G--VLCLFLLEMGLVAARRL--RDLRKVGWFL 238 (327)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHhheeCccchhhccchhhccHH----H--HHHHHHHHhhHHHHHhh--HHHHhhhHHH
Confidence 4689999999999999999999988721112211 122222222 2 34555555554433221 2344433333
Q ss_pred HHHHHHHHHHH----HHHHHHhCCChHHHHHHHHHhc
Q 007420 527 AVRFLTGPAVM----AAASIAVGLRGVLLHVAIVQAA 559 (604)
Q Consensus 527 ~iKLIV~PLLa----~ll~~lLgLd~~~~~VlVL~AA 559 (604)
+.==+++|++- +.+.+++|++.--...+.+++|
T Consensus 239 i~Fgi~~Pli~a~ig~~lg~~~gls~Gg~~llavLaA 275 (327)
T PF05982_consen 239 IAFGILMPLINALIGIGLGWLLGLSPGGAVLLAVLAA 275 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHh
Confidence 33336677654 3444667887544444444443
No 48
>PRK15060 L-dehydroascorbate transporter large permease subunit; Provisional
Probab=59.74 E-value=3e+02 Score=31.06 Aligned_cols=123 Identities=18% Similarity=0.219 Sum_probs=66.3
Q ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhH------HHHHHHHHhhhcccchhhhhcchh
Q 007420 447 ILIMVWRKLIRNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAG------LGMAMFSLGLFMALQPRIIACGNS 520 (604)
Q Consensus 447 il~~vlkklLkNPiIIAiILGLilsll~~~~gI~LP~~L~~~L~~LG~aa------iPLALf~IG~sLa~~~~~~~~~~k 520 (604)
.+++.+++-.+.-..+..+++....+.+.-..-.+|+.+.+.+..+...- .-+.++.+|+.|+.
T Consensus 263 ~l~~~l~~t~~~t~~i~~ii~~a~~f~~~lt~~gvp~~i~~~i~~~~~~~~~~Ll~i~~~~lvlGmfld~---------- 332 (425)
T PRK15060 263 TLYHVLINAAKTTSVVMFLVASAQVSAWLITIAELPMMVSDLLQPLVDSPRLLFIVIMVAIMVVGMVMDL---------- 332 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhH----------
Confidence 44555555444444444333333222210004467888888777666422 22233444444442
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHh-----cc-chhhHHHHHHHHcCCChhHHHHHHH
Q 007420 521 IAAFSMAVRFLTGPAVMAAASIAVGLRGVLLHVAIVQA-----AL-PQGIVPFVFAKEYNVHPDILSTGVI 585 (604)
Q Consensus 521 ~vl~iv~iKLIV~PLLa~ll~~lLgLd~~~~~VlVL~A-----Am-PtAv~s~IlA~~YG~d~elAAs~Vl 585 (604)
...=+++.|++. -+..-+|+|+.+..++++.. .. |.+.+.|+.+.--|.+.+.....+.
T Consensus 333 -----~a~ili~~Pil~-Pi~~~~Gidpv~fgii~~~~~~ig~iTPPvG~~lfv~~~ia~~~~~~i~~~~~ 397 (425)
T PRK15060 333 -----TPTVLILTPVLM-PLVKEAGIDPIYFGVMFIINCSIGLITPPVGNVLNVISGVAKLKFDDAVRGVF 397 (425)
T ss_pred -----HHHHHHHHHHHH-HHHHHcCCChHHHHHHHHHHHHHhCCCCCccHHHHHHHHhcCCCHHHHHHHHH
Confidence 222234555443 33445899999877766554 23 5588999988888877766644443
No 49
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=59.66 E-value=1e+02 Score=37.49 Aligned_cols=110 Identities=10% Similarity=-0.052 Sum_probs=66.6
Q ss_pred chHHHHHHHHHHHHHHhhcCCC-CCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhh----hhcchhHHHHHHHHHHHH
Q 007420 458 NPNTYSSLIGLVWSLVSFRWNV-QMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRI----IACGNSIAAFSMAVRFLT 532 (604)
Q Consensus 458 NPiIIAiILGLilsll~~~~gI-~LP~~L~~~L~~LG~aaiPLALf~IG~sLa~~~~~----~~~~~k~vl~iv~iKLIV 532 (604)
+-++-++++|+.+... +. .--.....+.+.+......+..+.+|+.+...... ....|+.+++.+++=++.
T Consensus 265 SGfLAVFVAGl~~gn~----~~~~~~~~~~~f~e~ie~LLn~~lFVlLGa~L~~~~l~~~~l~~~~w~~ilLaL~LifVr 340 (810)
T TIGR00844 265 DDLLVSFFAGTAFAWD----GWFAQKTHESNVSNVIDVLLNYAYFVYLGSILPWKDFNNGDIGLDVWRLIILSLVVIFLR 340 (810)
T ss_pred ccHHHHHHHHHHHhcc----cchhhhHHHhhHHHHHHHHHHHHHHHHHHHhhCHhhcccchhhHHHHHHHHHHHHHHHHH
Confidence 4445555666666543 22 00011223444555566778899999998653210 012355566666666677
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHhccchhhHHHHHHH
Q 007420 533 GPAVMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAK 571 (604)
Q Consensus 533 ~PLLa~ll~~lLgLd~~~~~VlVL~AAmPtAv~s~IlA~ 571 (604)
-|.+++++..+.+-...+...+++-..-|-++.+.+|+.
T Consensus 341 RPpaVlll~~li~~~~s~rErlFigWFGpRGIGSIyyl~ 379 (810)
T TIGR00844 341 RIPAVLILKPLIPDIKSWREAMFIGHFGPIGVGAVFAAI 379 (810)
T ss_pred HHHHHHHHhhhcccCCCHHHHHHheeeccccHHHHHHHH
Confidence 787777655555545567888888889999887776643
No 50
>KOG4821 consensus Predicted Na+-dependent cotransporter [General function prediction only]
Probab=58.27 E-value=20 Score=37.22 Aligned_cols=93 Identities=16% Similarity=0.192 Sum_probs=62.7
Q ss_pred HHHHHhhhcccchh-hhhcchhHHHHHHHHHHHHHHHHHHHHHHHh---CCChHHHHHHHHHhccchhhHHHH-HHHHcC
Q 007420 500 AMFSLGLFMALQPR-IIACGNSIAAFSMAVRFLTGPAVMAAASIAV---GLRGVLLHVAIVQAALPQGIVPFV-FAKEYN 574 (604)
Q Consensus 500 ALf~IG~sLa~~~~-~~~~~~k~vl~iv~iKLIV~PLLa~ll~~lL---gLd~~~~~VlVL~AAmPtAv~s~I-lA~~YG 574 (604)
..+.-|.+|..... .-..+|+.-+.+.+.-+++.|.+.|+++.+. +.|.....-+.+.++||+-+.+.+ +...-|
T Consensus 63 IF~~SGL~LkTE~l~aA~~~w~LhLFilI~~Ll~tPs~~~Lf~~~~~~~~i~~wLl~GL~~~~CMPttvSS~ViLT~~aG 142 (287)
T KOG4821|consen 63 IFLQSGLGLKTESLMAAMLNWRLHLFILILSLLITPSIVYLFCCAVKAAKIDDWLLIGLILTACMPTTVSSNVILTTNAG 142 (287)
T ss_pred EEeecCccccHHHHHHHHhCCchHHHHHHHHHHHhHHHHHHHHHHHhCcchhHHHHhhheeeeecCCccccceeeeeccC
Confidence 34455666654331 1135678778888889999999999998664 356677888899999999776655 455556
Q ss_pred CChhHHHHHHHHHHHHHHHHH
Q 007420 575 VHPDILSTGVIFGMLIALPIT 595 (604)
Q Consensus 575 ~d~elAAs~VllSTLLSLpl~ 595 (604)
+++ ++.++-|.++++-+.
T Consensus 143 GNa---~A~~v~S~f~g~L~~ 160 (287)
T KOG4821|consen 143 GNA---SALCVCSVFIGNLLG 160 (287)
T ss_pred ccH---HHHHHHHHHHHHHhh
Confidence 664 455566666654333
No 51
>PRK05326 potassium/proton antiporter; Reviewed
Probab=54.10 E-value=1.6e+02 Score=33.76 Aligned_cols=107 Identities=14% Similarity=0.072 Sum_probs=62.5
Q ss_pred hchHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhH-HHHHHHHHHHHHHH
Q 007420 457 RNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSI-AAFSMAVRFLTGPA 535 (604)
Q Consensus 457 kNPiIIAiILGLilsll~~~~gI~LP~~L~~~L~~LG~aaiPLALf~IG~sLa~~~~~~~~~~k~-vl~iv~iKLIV~PL 535 (604)
-++.+-+.++|+++.-. ..+--..+.+..+.++....|+-.+.+|+.+..... ...+.. +....++-++.-|+
T Consensus 244 ~Sg~la~~iaGl~l~n~----~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l--~~~~~~~l~i~~~l~~vaR~l 317 (562)
T PRK05326 244 GSGFLAVYLAGLVLGNR----PIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRL--LDIALPALLLALFLILVARPL 317 (562)
T ss_pred CcHHHHHHHHHHHHhCC----cccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 45666667777777533 222234577888888888999999999999876431 111111 22222233344466
Q ss_pred HHHHHHHHhCCChHHHHHHHHHhccchhhHHHHHHH
Q 007420 536 VMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAK 571 (604)
Q Consensus 536 La~ll~~lLgLd~~~~~VlVL~AAmPtAv~s~IlA~ 571 (604)
.++.....++.+ +....++-.+.|=+..+.++|.
T Consensus 318 ~v~l~~~~~~~~--~~e~~~i~~~g~RG~v~i~lA~ 351 (562)
T PRK05326 318 AVFLSLLPFRFN--LREKLFISWVGLRGAVPIVLAT 351 (562)
T ss_pred HHHHHHccCCCC--HhhhheeeeecchhHHHHHHHH
Confidence 666555555544 3444444445677777766664
No 52
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=50.34 E-value=2.6e+02 Score=29.84 Aligned_cols=98 Identities=13% Similarity=0.000 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHHHHHHHHHHHHHHHHHH
Q 007420 459 PNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMA 538 (604)
Q Consensus 459 PiIIAiILGLilsll~~~~gI~LP~~L~~~L~~LG~aaiPLALf~IG~sLa~~~~~~~~~~k~vl~iv~iKLIV~PLLa~ 538 (604)
|+++.+++|.++.-. ++--++.....-++.-+.+.|+.+|.-=..-...+ ....+..+....++=.++.-++.+
T Consensus 8 ~i~~ii~~G~~~~~~----~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 81 (385)
T PF03547_consen 8 PIFLIILLGYLLGRF----GILDPEASKGLSKLVFNVFLPALIFSSIANTDTLE--DLLSLWFIPVFAFIIFILGLLLGF 81 (385)
T ss_pred HHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchh--hhhhhHHHHHHHHHHHHHHHHHHH
Confidence 778888899888866 77667778888888889999999887544321111 112222233333333344444555
Q ss_pred HHHHHhCCChHHHHHHHHHhccch
Q 007420 539 AASIAVGLRGVLLHVAIVQAALPQ 562 (604)
Q Consensus 539 ll~~lLgLd~~~~~VlVL~AAmPt 562 (604)
.+.+++..+..+..+.++.++.+-
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~N 105 (385)
T PF03547_consen 82 LLSRLFRLPKEWRGVFVLAASFGN 105 (385)
T ss_pred HHHHhcCCCcccceEEEecccCCc
Confidence 555667888888888777776655
No 53
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=47.45 E-value=1.8e+02 Score=32.02 Aligned_cols=102 Identities=13% Similarity=0.190 Sum_probs=67.5
Q ss_pred cccChhHHHHHHHHH-----HHHHhHHHHHHHhhcCCCCCc---cHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccee
Q 007420 32 KIFTPDQCSGINRFV-----ALFAVPLLSFHFISSNDPYKM---NLRFIAADTLQKIIVLVVLAIWSKLSKRGCLEWTIT 103 (604)
Q Consensus 32 g~~s~~~~~~LnrFV-----f~~ALPALLF~~IA~~dl~~l---~~~fl~ay~Lg~livfll~~llar~~~r~~~~~~aa 103 (604)
|+++++..+..+.|. .++-.-||+--+|...|.+-+ -.+|+-..+.+.+.+++++.+...++..+..| +-
T Consensus 7 ~~~p~~~~~~~~~fm~~~~Fl~fyIa~LI~GSIL~m~Rk~Lik~~~r~~p~il~g~~~a~~~g~lvG~l~G~~~~~--~~ 84 (347)
T TIGR00783 7 NILPQNVIDATSNFMKGSNFLYLYIACLIVGSILGMNRKLLLKALMRFIPPALIGMVLAVIVGILVGTLFGLGFDH--SL 84 (347)
T ss_pred CCCCHHHHHHHHHHHccCChHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhH--hh
Confidence 899999999998875 467788999999999998866 46888888888888888877776666554444 11
Q ss_pred eee-e---ccCCccccchHHHHhh-hhccchhhHHHH
Q 007420 104 LFS-V---STLPNTLVMGIPLLKG-MYGEFSGSLMVQ 135 (604)
Q Consensus 104 V~g-l---asfsNtgfIGiPIl~a-lfG~~a~~~val 135 (604)
.+- + +.=-+-+.+.+..... +.|.++..+.+.
T Consensus 85 ~~i~lPIm~GG~GaGavPLS~~Y~~~~g~~~~~~~s~ 121 (347)
T TIGR00783 85 MYIVMPIMAGGVGAGIVPLSIIYSAITGRSSEEIFSQ 121 (347)
T ss_pred heeeehhcCCCcccchhhHHHHHHHHhCCCHHHHHHH
Confidence 111 1 2223345554444333 445555444443
No 54
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=44.52 E-value=4.8e+02 Score=28.91 Aligned_cols=131 Identities=13% Similarity=0.064 Sum_probs=74.4
Q ss_pred hchHHHHHHHHHHHHHHhhcCCCC-CcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHH--HHHHHHHHHHH
Q 007420 457 RNPNTYSSLIGLVWSLVSFRWNVQ-MPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIA--AFSMAVRFLTG 533 (604)
Q Consensus 457 kNPiIIAiILGLilsll~~~~gI~-LP~~L~~~L~~LG~aaiPLALf~IG~sLa~~~~~~~~~~k~v--l~iv~iKLIV~ 533 (604)
-.|++++++++++++-+ |+- .|. -.+.-+.+-.-..|++++.+=.+.+.++ ..+...|.. +.+..+=.++.
T Consensus 25 l~~~vl~~~~~~~lsnl----gli~~p~-~s~~y~~v~~~~vPlai~LlLl~~Dlr~-i~~~g~~~l~~F~~~~~g~viG 98 (378)
T PF05684_consen 25 LPGAVLCYLLGMLLSNL----GLIDSPA-SSPVYDFVWTYLVPLAIPLLLLSADLRR-ILRLGGRLLLAFLIGAVGTVIG 98 (378)
T ss_pred cCHHHHHHHHHHHHHHC----CCcCCCC-cchHHHHHHHHHHHHHHHHHHHHccHHH-HHHhhHHHHHHHHHHHHHHHHH
Confidence 37899999999999988 643 132 2344556666778887777666666544 222222221 12222222222
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhc-cchhhHHHHHHHHcCCChhHHHHHHHHHHHHHHH
Q 007420 534 PAVMAAASIAVGLRGVLLHVAIVQAA-LPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALP 593 (604)
Q Consensus 534 PLLa~ll~~lLgLd~~~~~VlVL~AA-mPtAv~s~IlA~~YG~d~elAAs~VllSTLLSLp 593 (604)
=++.+.+....--+..|+....+.++ .=-++|-.-+++.++.+.+.-+..+..-.+++-+
T Consensus 99 ~~va~~l~~~~l~~~~wk~ag~l~gsyiGGs~N~~Av~~al~~~~~~~~a~~aaDnv~~~~ 159 (378)
T PF05684_consen 99 AVVAFLLFGGFLGPEGWKIAGMLAGSYIGGSVNFVAVAEALGVSDSLFAAALAADNVVMAL 159 (378)
T ss_pred HHHHHHHHhhcccchHHHHHHHHHhcccCchhHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 22332222211013344444444443 2336677778899999988888888888877633
No 55
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=43.62 E-value=4.5e+02 Score=28.28 Aligned_cols=121 Identities=12% Similarity=0.091 Sum_probs=65.7
Q ss_pred HHhch--HHHHHH-HHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhh-hcchhHHHHHHHHHH
Q 007420 455 LIRNP--NTYSSL-IGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRII-ACGNSIAAFSMAVRF 530 (604)
Q Consensus 455 lLkNP--iIIAiI-LGLilsll~~~~gI~LP~~L~~~L~~LG~aaiPLALf~IG~sLa~~~~~~-~~~~k~vl~iv~iKL 530 (604)
.++-| .+++.+ ++.+++.++. ....+|+++....+.+-. ..+|..+.....+. ++........+..=+
T Consensus 173 ~l~iPa~~llGpml~~a~~~~~~~-~~~~~P~~l~~~aqv~iG-------~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l 244 (318)
T PF05145_consen 173 RLRIPAPWLLGPMLVSAILNLFGG-PSFSLPPWLVNAAQVLIG-------ASIGSRFTRETLRELRRLLPPALLSTLLLL 244 (318)
T ss_pred HhCCCcHHHHHHHHHHHHHHHHhC-CCCCCCHHHHHHHHHHHH-------HHHHccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444 444444 4444454411 145688876665554433 24566665543111 112222333344444
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHhccchhhHHHH-HHHHcCCChhHHHHHHHHH
Q 007420 531 LTGPAVMAAASIAVGLRGVLLHVAIVQAALPQGIVPFV-FAKEYNVHPDILSTGVIFG 587 (604)
Q Consensus 531 IV~PLLa~ll~~lLgLd~~~~~VlVL~AAmPtAv~s~I-lA~~YG~d~elAAs~VllS 587 (604)
.+.=++++.+.++.++|... .+++..|-+..... +|...|.|+..++..=++=
T Consensus 245 ~~~~~~a~~l~~~~~~~~~t----~~La~aPGGl~eM~l~A~~l~~d~~~V~~~q~~R 298 (318)
T PF05145_consen 245 ALCALFAWLLSRLTGIDFLT----ALLATAPGGLAEMALIALALGADVAFVAAHQVVR 298 (318)
T ss_pred HHHHHHHHHHHHHHCCCHHH----HHHHhCCccHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 44445555556667777544 56778898777654 5888999988876655443
No 56
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=43.57 E-value=64 Score=35.01 Aligned_cols=118 Identities=14% Similarity=0.138 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHHHHHHHHHHHHHHHHHHHHH
Q 007420 462 YSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMAAAS 541 (604)
Q Consensus 462 IAiILGLilsll~~~~gI~LP~~L~~~L~~LG~aaiPLALf~IG~sLa~~~~~~~~~~k~vl~iv~iKLIV~PLLa~ll~ 541 (604)
+.+++|..+.-+ .-.+++......+. -.|..-+.+|..+..++. ....+.-++. .+.=.++.+.+.+.+.
T Consensus 178 lplliG~~lgnl----~~~l~~~~~~Gi~~----lLp~~~~~lG~~l~lq~i-~~~G~~GilL-~~~~~~~t~~~~~~~~ 247 (326)
T PRK05274 178 LPLLVGFILGNL----DPELRQFLGKAVPV----LIPFFAFALGNGIDLGTI-ITAGLSGILL-GVAVVAVTGIPLYLAD 247 (326)
T ss_pred HHHHHHHHHHhH----HHhhHHHhcCCcEE----EHHHHHHHHhcceeHhHH-HhcCCcchhh-hhhHhhccchhhHhHh
Confidence 555555555543 22234443333333 778888889999998652 2333333332 2233344566566666
Q ss_pred HHhCCChHHHHHHHHHhc-----cchhhHHHHHHHHcCCChhHHHHHHHHHHHHH
Q 007420 542 IAVGLRGVLLHVAIVQAA-----LPQGIVPFVFAKEYNVHPDILSTGVIFGMLIA 591 (604)
Q Consensus 542 ~lLgLd~~~~~VlVL~AA-----mPtAv~s~IlA~~YG~d~elAAs~VllSTLLS 591 (604)
++++.++......++.+| .|.+ ..-..-.++...+.++..|....+++
T Consensus 248 Rl~~~~~g~~g~a~~ttaG~aic~pAA--vaa~~p~~~~~~~~at~~VA~~vivt 300 (326)
T PRK05274 248 RLIGGGNGVAGAAAGSTAGNAVATPAA--VAAADPSFAPFAPAATAQVAAAVIVT 300 (326)
T ss_pred heeecCCCcchHHHHHHHHHHHHHHHH--HHhhccccccchHhHHHHHHHHHHHH
Confidence 777655553334443332 2222 11122234445555555555555555
No 57
>TIGR00819 ydaH p-Aminobenzoyl-glutamate transporter family. The p-Aminobenzoyl-glutamate transporter family includes two transporters, the AbgT (YdaH) protein of E. coli and MtrF of Neisseria gonorrhoea. AbgT is apparently cryptic in wild type cells, but when expressed on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs. p-Aminobenzoate is a constituent of and a precursor for the biosynthesis of folic acid.
Probab=37.19 E-value=7.3e+02 Score=28.91 Aligned_cols=47 Identities=13% Similarity=0.186 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHH------hccchh---hHHHHHHHHcCCChh
Q 007420 531 LTGPAVMAAASIAVGLRGVLLHVAIVQ------AALPQG---IVPFVFAKEYNVHPD 578 (604)
Q Consensus 531 IV~PLLa~ll~~lLgLd~~~~~VlVL~------AAmPtA---v~s~IlA~~YG~d~e 578 (604)
+.+|+++ -+..++|++++..+.+.=. ...|+. .....+++||+.|..
T Consensus 413 l~aPI~v-Pm~~~lGisp~~t~~AyriGDs~tNiItP~~~y~~lil~~~~~y~k~~g 468 (513)
T TIGR00819 413 ILAPIFV-PMFMLAGFAPAFAQAAFRIADSSTLIIAPMMPFFGLFLAFLMKYKKDAG 468 (513)
T ss_pred HHHHHHH-HHHHHcCCCHHHHHHHHHHhchHHHhhccCcchHHHHHHHHHHhccCCc
Confidence 4556443 3345679998877666433 345666 788888999987744
No 58
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=35.94 E-value=1.2e+02 Score=36.81 Aligned_cols=133 Identities=10% Similarity=0.064 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhhhhhccccChhHHHHHHHHHHHHHhHHHHHHHhhcCCCCCc-c---HHHHHHHHH-HHHHHHHHHHHHH
Q 007420 16 PLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISSNDPYKM-N---LRFIAADTL-QKIIVLVVLAIWS 90 (604)
Q Consensus 16 PIFlLI~LGyla~R~rg~~s~~~~~~LnrFVf~~ALPALLF~~IA~~dl~~l-~---~~fl~ay~L-g~livfll~~lla 90 (604)
+++.-..+|.+... +-+..+..+.+..|+..+-+|......=.+.|+..+ + |.+++...+ +.+.=++.+++.+
T Consensus 295 ~ilGAFlaGl~lp~--~~~~~~l~ekle~~~~~lflPlFFv~vGl~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a 372 (832)
T PLN03159 295 SVFGAFVFGLVIPN--GPLGVTLIEKLEDFVSGLLLPLFFAISGLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIA 372 (832)
T ss_pred HHHHHHHHhhccCC--cchHHHHHHHHHHHHHHHHHHHHHHHhhheeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555443 234455677888899999999988887788888766 3 223222222 1112122233344
Q ss_pred HHhhcCCcccceeeeeeccCCccccchHHHHh-----hhhccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 007420 91 KLSKRGCLEWTITLFSVSTLPNTLVMGIPLLK-----GMYGEFSGSLMVQIVVLQCIIWYTLMLFMFE 153 (604)
Q Consensus 91 r~~~r~~~~~~aaV~glasfsNtgfIGiPIl~-----alfG~~a~~~valiv~v~~lIl~pl~lvLmE 153 (604)
++.+-..++ +...|+ ...--+.+.+-++. .+.+++....+.+++++.+.+..|+...+..
T Consensus 373 ~~~g~~~~e--al~lG~-lm~~kG~~~Lii~~ig~~~gvi~~~~f~~lVl~avl~T~i~~Plv~~ly~ 437 (832)
T PLN03159 373 FFYTMPFRE--GITLGF-LMNTKGLVEMIVLNVGRDQEVLDDESFAVMVLVAVAMTALITPVVTVVYR 437 (832)
T ss_pred HHhCCCHHH--HHHHHH-HHhcccHHHHHHHHHHHhcCccCchhhhHHHHHHHHHHHHHHHHHHHHhC
Confidence 544332334 333333 11222333333333 3445555555555555667777787665543
No 59
>PRK03818 putative transporter; Validated
Probab=35.59 E-value=7.7e+02 Score=28.69 Aligned_cols=75 Identities=15% Similarity=0.227 Sum_probs=37.1
Q ss_pred CCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchh----hhhcchhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHH
Q 007420 478 NVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPR----IIACGNSIAAFSMAVRFLTGPAVMAAASIAVGLRGVLLHV 553 (604)
Q Consensus 478 gI~LP~~L~~~L~~LG~aaiPLALf~IG~sLa~~~~----~~~~~~k~vl~iv~iKLIV~PLLa~ll~~lLgLd~~~~~V 553 (604)
++++|+...++++.+| ++||+-..-+.--+. .++..++..+.. ++=.++..++++.+.++++++... .+
T Consensus 51 ~~~~~~~~~~~~~~~g-----l~lFv~~vGl~~Gp~f~~~l~~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~ 123 (552)
T PRK03818 51 GLTLDSDMLHFIQEFG-----LILFVYTIGIQVGPGFFSSLRKSGLRLNLFA-VLIVILGGLVTAILHKLFGIPLPV-ML 123 (552)
T ss_pred CcccChHHHHHHHHHH-----HHHHHHHHhhcccHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHHhCCCHHH-HH
Confidence 7788887776666444 555554444433221 111223333322 222233334456666788998764 33
Q ss_pred HHHHhc
Q 007420 554 AIVQAA 559 (604)
Q Consensus 554 lVL~AA 559 (604)
-++..+
T Consensus 124 G~~aGa 129 (552)
T PRK03818 124 GIFSGA 129 (552)
T ss_pred HHhhcc
Confidence 344433
No 60
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=35.51 E-value=1.2e+02 Score=34.16 Aligned_cols=88 Identities=10% Similarity=-0.011 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhhhhhccccCh---hHHHHHHHHHHHHHhHHHHH-HHhhcCCCCCc----cHHHHHHHHHHHHHHHHHHH
Q 007420 16 PLYVAMILAYGSVKWWKIFTP---DQCSGINRFVALFAVPLLSF-HFISSNDPYKM----NLRFIAADTLQKIIVLVVLA 87 (604)
Q Consensus 16 PIFlLI~LGyla~R~rg~~s~---~~~~~LnrFVf~~ALPALLF-~~IA~~dl~~l----~~~fl~ay~Lg~livfll~~ 87 (604)
|+-.+|.+=.++.-. +..++ +.++.+++|..+=-.=+|++ ..++-+|++++ .|.++...+.-.+.+-...+
T Consensus 292 ~va~MIil~a~lk~~-nlvp~~i~~GA~~l~~F~sk~~t~~Lm~giGv~ytdl~ev~~alt~~~vii~~~vVl~~i~~~~ 370 (438)
T COG3493 292 PVAFMIILVAILKAA-NLVPKEIEEGAKQLSQFFSKNLTWPLMAGIGVAYTDLNEVAAALTWQNVIIALSVVLGAILGGA 370 (438)
T ss_pred hHHHHHHHHHHHHHh-CcCCHHHHHHHHHHHHHHHHhhHHHHHHhhhhccccHHHHHHHhchhHHHHHHHHHHHHHHHHH
Confidence 554555666666664 88885 56788888887655544444 47888999986 78888766665555556566
Q ss_pred HHHHHhhcCCcccceeeee
Q 007420 88 IWSKLSKRGCLEWTITLFS 106 (604)
Q Consensus 88 llar~~~r~~~~~~aaV~g 106 (604)
+..|+..--|.| +++.+
T Consensus 371 f~grl~~~YPVE--aAI~a 387 (438)
T COG3493 371 FVGRLMGFYPVE--AAITA 387 (438)
T ss_pred HHHHHhcCCchH--HHHHH
Confidence 677776666667 45544
No 61
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=33.66 E-value=5.9e+02 Score=26.78 Aligned_cols=120 Identities=10% Similarity=0.050 Sum_probs=69.3
Q ss_pred HHHHHHHhchHHHHHHHHHHH-HHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHHHHHHHH
Q 007420 450 MVWRKLIRNPNTYSSLIGLVW-SLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAV 528 (604)
Q Consensus 450 ~vlkklLkNPiIIAiILGLil-sll~~~~gI~LP~~L~~~L~~LG~aaiPLALf~IG~sLa~~~~~~~~~~k~vl~iv~i 528 (604)
.++.+++ |++.-+.+|.++ .-. ++--.+.....-+.+=+.+.|+.+|.-=..-.... ..............
T Consensus 5 ~~~~~il--pv~~ii~lG~~~~~r~----~~~~~~~~~~l~~~v~~i~lP~lif~~~~~~~~~~--~~~~~~~~~~~~~~ 76 (321)
T TIGR00946 5 VILETVL--PILVVILLGYILGKRF----GILDEEHASGINRFVINFALPLTIFHSISTTLADI--LQKSQSPVVLFLWG 76 (321)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHh----CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 3454443 888899999999 676 66555777777888888999999987555422110 00111122222333
Q ss_pred HHHHHHHHHHHHHH-HhCCChHHHHHHHHHhccch-hhHH-HHHHHHcCCCh
Q 007420 529 RFLTGPAVMAAASI-AVGLRGVLLHVAIVQAALPQ-GIVP-FVFAKEYNVHP 577 (604)
Q Consensus 529 KLIV~PLLa~ll~~-lLgLd~~~~~VlVL~AAmPt-Av~s-~IlA~~YG~d~ 577 (604)
-+++.-++.+.+.+ ++..|........+.++.+- +... ++...-||.+.
T Consensus 77 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~GlPl~~~~~G~~~ 128 (321)
T TIGR00946 77 AFSGSYALIWLITKPLFKADYGKLSGFLLVSALPNTAFIGYPLLLSLFGEEG 128 (321)
T ss_pred HHHHHHHHHHHHHHHHHhcccchhhHHHHHhhhccceeehHHHHHHHhcccc
Confidence 33444555666665 56777666666666666553 3333 33344555543
No 62
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=33.44 E-value=5.7e+02 Score=28.65 Aligned_cols=34 Identities=18% Similarity=0.199 Sum_probs=24.2
Q ss_pred HHHhccchhhHHHHHHHHcCCChhHHHHHHHHHHH
Q 007420 555 IVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGML 589 (604)
Q Consensus 555 VL~AAmPtAv~s~IlA~~YG~d~elAAs~VllSTL 589 (604)
.+..+.=.|...+++..++|.||..++. .++||+
T Consensus 397 ~~~~~~~~G~~lp~~~~k~~~DPa~~s~-p~itt~ 430 (449)
T TIGR00400 397 SLTVAKILGGLLPIVAKLLKLDPALMSG-PLITTI 430 (449)
T ss_pred HHHHHHHHHHHHHHHHHHcCCChhhhhh-hHHHHH
Confidence 3444455577788899999999998765 455554
No 63
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=32.89 E-value=1.2e+02 Score=34.61 Aligned_cols=71 Identities=15% Similarity=0.087 Sum_probs=43.2
Q ss_pred HHHHHHHHHhhhhhccccChhHHHHHHHHHHHHHhHHHHHHHhhcCCCCCc--cHHHHHHHHH-HHHHHHHHHHHHH
Q 007420 17 LYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISSNDPYKM--NLRFIAADTL-QKIIVLVVLAIWS 90 (604)
Q Consensus 17 IFlLI~LGyla~R~rg~~s~~~~~~LnrFVf~~ALPALLF~~IA~~dl~~l--~~~fl~ay~L-g~livfll~~lla 90 (604)
+.+.+++|.+++-. ...+.- .--...++.+.+|.++|..-.+.|+.++ ++.-+....+ ++++.++++.+..
T Consensus 25 ~v~lil~Gi~lg~~-~~~~~~--~~~~~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~~i~~la~~~vlit~~~v~~~~ 98 (525)
T TIGR00831 25 PIALILAGLLLGLA-GLLPEV--PLDREIVLFLFLPPLLFEAAMNTDLRELRENFRPIALIAFLLVVVTTVVVGFSL 98 (525)
T ss_pred HHHHHHHHHHHHhc-cccCCC--CCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777752 332210 0112356779999999999999999998 6655554443 4445555444433
No 64
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=32.87 E-value=7.1e+02 Score=27.51 Aligned_cols=84 Identities=15% Similarity=0.087 Sum_probs=52.1
Q ss_pred hchHHHHHHHHHHHHHHhhcCCCCCc-HHHHHHHHHHHH-hHHHHHHHHHhhhcccchhhhhcchhHHHHHHHHHHHHHH
Q 007420 457 RNPNTYSSLIGLVWSLVSFRWNVQMP-AIVAKSISILSD-AGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGP 534 (604)
Q Consensus 457 kNPiIIAiILGLilsll~~~~gI~LP-~~L~~~L~~LG~-aaiPLALf~IG~sLa~~~~~~~~~~k~vl~iv~iKLIV~P 534 (604)
-++.+=|.++|++++-+ +.- +-+.+-++.+++ ...|+=.+.+|+.++... ....+..++..+..=.+.-=
T Consensus 243 ls~ilGAFlaGl~ls~~------~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~--l~~~~~~~l~~~~~~i~~K~ 314 (397)
T COG0475 243 LSMILGAFLAGLLLSES------EYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGV--LLENLLLILLLVALAILGKI 314 (397)
T ss_pred hhHHHHHHHHHHHhccc------ccchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHH--HhccHHHHHHHHHHHHHHHH
Confidence 45666777778887754 222 578888999999 999999999999999754 22333332222222222222
Q ss_pred HHHHHHHHHhCCCh
Q 007420 535 AVMAAASIAVGLRG 548 (604)
Q Consensus 535 LLa~ll~~lLgLd~ 548 (604)
+..+..++.+|.+.
T Consensus 315 ~~~~~~~~~~g~~~ 328 (397)
T COG0475 315 LGAYLAARLLGFSK 328 (397)
T ss_pred HHHHHHHHHHcCcH
Confidence 33455556677553
No 65
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=31.57 E-value=7.6e+02 Score=27.46 Aligned_cols=127 Identities=16% Similarity=0.102 Sum_probs=78.0
Q ss_pred HHHHHHHHHhchH---HHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhh-hcchhHHH
Q 007420 448 LIMVWRKLIRNPN---TYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRII-ACGNSIAA 523 (604)
Q Consensus 448 l~~vlkklLkNPi---IIAiILGLilsll~~~~gI~LP~~L~~~L~~LG~aaiPLALf~IG~sLa~~~~~~-~~~~k~vl 523 (604)
+...+-+.+|.|. +-.++++.+++..+ -.++++|+++....+.+-. ..||..++...... ++.....+
T Consensus 199 ~~g~l~~~lr~Pa~~ll~~l~l~a~v~~~~-~~~~~lP~wl~~va~~~iG-------~~IG~~f~~~~l~~~~r~~~~~~ 270 (352)
T COG3180 199 LGGLLGKLLRFPAPTLLGPLLLGAIVHFGG-GITIQLPAWLLAVAQALIG-------ALIGSRFDRSILREAKRLLPAIL 270 (352)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHhhccc-ceeeeCCHHHHHHHHHHHH-------HHHcccccHHHHHHhHhhcchHH
Confidence 3344556678773 45566777777652 1256799998866655443 35677777654221 22233445
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhccchhhHHH-HHHHHcCCChhHHHHHHHH
Q 007420 524 FSMAVRFLTGPAVMAAASIAVGLRGVLLHVAIVQAALPQGIVPF-VFAKEYNVHPDILSTGVIF 586 (604)
Q Consensus 524 ~iv~iKLIV~PLLa~ll~~lLgLd~~~~~VlVL~AAmPtAv~s~-IlA~~YG~d~elAAs~Vll 586 (604)
..++.=+++.-.+++++.++.++|... .+++..|-+.... .+|...+.|+.++.+.=.+
T Consensus 271 v~ii~l~~~~~~~a~ll~~~~~i~~~t----a~La~sPGGl~~ma~~A~~l~ad~a~V~a~q~l 330 (352)
T COG3180 271 VSIIALMAIAAGMAGLLSWLTGIDLNT----AYLATSPGGLDTMAAIAAALGADPAFVMALQVL 330 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHH----HHHHcCCCcHHHHHHHHHHcCCChHHHHHHHHH
Confidence 555555666666677777777877654 5667889877654 4577777787776554433
No 66
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=31.55 E-value=6.9e+02 Score=30.20 Aligned_cols=10 Identities=40% Similarity=0.856 Sum_probs=6.5
Q ss_pred CCCCCCCCCC
Q 007420 308 HYPAPNPGMF 317 (604)
Q Consensus 308 ~~~~~~~~~~ 317 (604)
.||.|++|-+
T Consensus 57 ~~~~~~~~~~ 66 (742)
T TIGR01299 57 DFPAPADGYS 66 (742)
T ss_pred CCCCCCCCCC
Confidence 5777766654
No 67
>TIGR02123 TRAP_fused TRAP transporter, 4TM/12TM fusion protein. In some species, the 12-transmembrane spanning and 4-transmembrane spanning components of tripartite ATP-independent periplasmic (TRAP)-type transporters are fused. This model describes such transporters, found in the Archaea and in Bacteria.
Probab=30.56 E-value=9.8e+02 Score=28.39 Aligned_cols=40 Identities=20% Similarity=0.268 Sum_probs=27.4
Q ss_pred HHhCCChHHHHHHHHHhc-----c-chhhHHHHHHHHcCCChhHHH
Q 007420 542 IAVGLRGVLLHVAIVQAA-----L-PQGIVPFVFAKEYNVHPDILS 581 (604)
Q Consensus 542 ~lLgLd~~~~~VlVL~AA-----m-PtAv~s~IlA~~YG~d~elAA 581 (604)
.-+|+|+.+....++..+ + |.+.+.|+-+.--|.+.....
T Consensus 464 ~~lGidpi~~~~~v~~~~~ig~iTPPvgl~lfvaa~Ia~~~~~~~~ 509 (613)
T TIGR02123 464 IALGVPPIAAHMFVFYFGILADITPPVALAAFAAAGIAGADPMKTG 509 (613)
T ss_pred HHcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCHHHHH
Confidence 346899987665554432 4 558888888888787766554
No 68
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=29.78 E-value=3.9e+02 Score=30.23 Aligned_cols=39 Identities=10% Similarity=0.271 Sum_probs=27.2
Q ss_pred HHHHHhchHHHHHHHHHHHHHHhhc-CCCCCcHHHHHHHH
Q 007420 452 WRKLIRNPNTYSSLIGLVWSLVSFR-WNVQMPAIVAKSIS 490 (604)
Q Consensus 452 lkklLkNPiIIAiILGLilsll~~~-~gI~LP~~L~~~L~ 490 (604)
+|+++++|++||+.++-.....++. +-..+|..+.+.++
T Consensus 251 ~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~ 290 (466)
T KOG2532|consen 251 YKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLG 290 (466)
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhC
Confidence 7789999999999998877655221 12236777765554
No 69
>TIGR03109 exosortase_1 exosortase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. We designate this, the most common type so far, exosortase 1. We propose the gene symbol xrtA, analogous to srtA for the most common type of sortase in Gram-positive bacteria.
Probab=28.61 E-value=2.4e+02 Score=29.77 Aligned_cols=90 Identities=10% Similarity=0.080 Sum_probs=61.4
Q ss_pred CCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhh---hcchhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHH
Q 007420 478 NVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRII---ACGNSIAAFSMAVRFLTGPAVMAAASIAVGLRGVLLHVA 554 (604)
Q Consensus 478 gI~LP~~L~~~L~~LG~aaiPLALf~IG~sLa~~~~~~---~~~~k~vl~iv~iKLIV~PLLa~ll~~lLgLd~~~~~Vl 554 (604)
-+|+|+.+...++.+..-.+-..|-..|.-........ .....-.-.|+.+|.++.=+..-.++..+-..+...+++
T Consensus 127 ~vP~p~~l~~pLq~~ta~~~~~~L~~~Gipv~~eG~~I~l~~g~~~Va~aCSGlr~l~~~~~l~~l~~~l~~~~~~~r~~ 206 (267)
T TIGR03109 127 AVPVGDFLIPPLQDITAFFTVALLSATGIPVYREGVFIHIPSGTFEVAEACSGLRYLIASLAIGALYAYLNFRSIKRRLL 206 (267)
T ss_pred HcCCHHHHhhHHHHHHHHHHHHHHHHcCCCEEEeeeEEEECCEEEEEeCCCCCHHHHHHHHHHHHHHHHHhccchhHHHH
Confidence 78999999999999999999999999998877654211 111122235888997775433333333333555667888
Q ss_pred HHHhccchhhHHH
Q 007420 555 IVQAALPQGIVPF 567 (604)
Q Consensus 555 VL~AAmPtAv~s~ 567 (604)
++.++.|.++..-
T Consensus 207 l~~~ai~iai~aN 219 (267)
T TIGR03109 207 FFLVSIIVPILAN 219 (267)
T ss_pred HHHHHHHHHHHHH
Confidence 8889999887653
No 70
>COG1968 BacA Undecaprenyl pyrophosphate phosphatase [Lipid transport and metabolism]
Probab=28.59 E-value=7.6e+02 Score=26.48 Aligned_cols=107 Identities=11% Similarity=0.073 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhhcccchhhh---------hcchhHHHHHHHHHHHHH-HHH-----HHHHHHHhCCC
Q 007420 483 AIVAKSISILSDAGLGMAMFSLGLFMALQPRII---------ACGNSIAAFSMAVRFLTG-PAV-----MAAASIAVGLR 547 (604)
Q Consensus 483 ~~L~~~L~~LG~aaiPLALf~IG~sLa~~~~~~---------~~~~k~vl~iv~iKLIV~-PLL-----a~ll~~lLgLd 547 (604)
+.++..+.. -..+..+|++.|..+-...+.. .-.+++.+.+-+...+-. |-+ ......++|++
T Consensus 106 d~i~~~l~~--~~~va~~lIv~gi~li~~e~~~~~~~~~~~~~l~~~da~~IGlaQ~lAl~PG~SRSGaTI~~~lllG~~ 183 (270)
T COG1968 106 DFIKSHLFN--PRVVAIALIVGGILLILAEKLNKKPRLRDLDDLTLRDALIIGLAQCLALIPGTSRSGATISGGLLLGLS 183 (270)
T ss_pred HHHHHHccC--hHHHHHHHHHHHHHHHHHHHhccccCcCChhhCCHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHcCCC
Confidence 344443333 4566677777777664432111 123455555444444433 632 33445678999
Q ss_pred hHHHHHHHHHhccchhhHHHHHHHHcCCChhHHHHH--HHHHHHHH
Q 007420 548 GVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTG--VIFGMLIA 591 (604)
Q Consensus 548 ~~~~~VlVL~AAmPtAv~s~IlA~~YG~d~elAAs~--VllSTLLS 591 (604)
.....=.--..++|+..-+..+.-.-..+.-.+... +.+.++.+
T Consensus 184 r~~AaefSFlLaIP~m~GA~~l~l~k~~~~~~~~~~~~l~vg~i~A 229 (270)
T COG1968 184 REAAAEFSFLLAIPAMFGASALDLFKSGDALSAADLPILLVGFIVA 229 (270)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHHH
Confidence 887666666678999888888776544433233222 44444544
No 71
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=28.37 E-value=2e+02 Score=33.36 Aligned_cols=114 Identities=11% Similarity=0.042 Sum_probs=59.7
Q ss_pred chHHHHHHHHHHHHHHhhcCCCCC--cHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHHHHHHHHHHHHHHH
Q 007420 458 NPNTYSSLIGLVWSLVSFRWNVQM--PAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPA 535 (604)
Q Consensus 458 NPiIIAiILGLilsll~~~~gI~L--P~~L~~~L~~LG~aaiPLALf~IG~sLa~~~~~~~~~~k~vl~iv~iKLIV~PL 535 (604)
+.++-.+++|+++.-.. +.+.+- -..+..+.+.++..+-.+..+.+|.++..... ...+..++.+.++=++.=|+
T Consensus 260 SGiLAvv~aGl~~~~y~-~~n~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~~~~--~~~~~~i~~~l~~~ll~R~l 336 (559)
T TIGR00840 260 SGILALIFCGITMKKYV-EANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTENH--EWNWAFVVATLSFCVIYRVL 336 (559)
T ss_pred chHHHHHHHHHHHHhhh-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh--hHHHHHHHHHHHHHHHHHHH
Confidence 34444555666664320 001111 12355677888888888888999997744321 11222222222222223333
Q ss_pred HHHHHHHHh----CCChHHHHHHHHHhccchhhHHHHHHHHcC
Q 007420 536 VMAAASIAV----GLRGVLLHVAIVQAALPQGIVPFVFAKEYN 574 (604)
Q Consensus 536 La~ll~~lL----gLd~~~~~VlVL~AAmPtAv~s~IlA~~YG 574 (604)
.++...++. +..-.+....++..+-|=|+.++.+|..-.
T Consensus 337 ~V~~~~~~~~~~~~~~~~~~e~~il~w~GlRGaVa~aLAl~l~ 379 (559)
T TIGR00840 337 GVRTLSWITNEFRPVEIPYKDQLVIFYAGLRGAVAFALALLLD 379 (559)
T ss_pred HHHHHHHHHHHhccCCCChhhhhheeeeccccHHHHHHHHhCC
Confidence 333332221 223345667778888888888888886543
No 72
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=27.46 E-value=2.1e+02 Score=31.52 Aligned_cols=57 Identities=9% Similarity=0.171 Sum_probs=35.9
Q ss_pred HHHHHHhHHHHHHHhhcCCCCCc-c--HHHHHHHHHHHHHHHHHHHHH-HHHhhcCCcccceee
Q 007420 45 FVALFAVPLLSFHFISSNDPYKM-N--LRFIAADTLQKIIVLVVLAIW-SKLSKRGCLEWTITL 104 (604)
Q Consensus 45 FVf~~ALPALLF~~IA~~dl~~l-~--~~fl~ay~Lg~livfll~~ll-ar~~~r~~~~~~aaV 104 (604)
.+-.+++=.++..++++.++.++ + .+++....++.+++.+.+.++ .|+.+| ||++++
T Consensus 279 ~I~~~sL~~fl~~almsl~l~~l~~~a~Plliil~~q~i~~~~f~~fv~fr~~gk---dydaav 339 (368)
T PF03616_consen 279 RISGISLDLFLAMALMSLKLWVLADYALPLLIILAVQTILMVLFAYFVTFRVMGK---DYDAAV 339 (368)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCC---ChhHHH
Confidence 35566777788999999999988 4 355555566666555544443 444544 555444
No 73
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=27.22 E-value=6.5e+02 Score=29.33 Aligned_cols=78 Identities=14% Similarity=0.120 Sum_probs=40.3
Q ss_pred HHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccch--hhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 007420 465 LIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQP--RIIACGNSIAAFSMAVRFLTGPAVMAAASI 542 (604)
Q Consensus 465 ILGLilsll~~~~gI~LP~~L~~~L~~LG~aaiPLALf~IG~sLa~~~--~~~~~~~k~vl~iv~iKLIV~PLLa~ll~~ 542 (604)
++|+++..+ ++++|+.+.+ ...-+=++++|++-...- ..++..++..+.. ++=+++.-++++.+.+
T Consensus 43 fvgl~~G~~----g~~i~~~v~~-------~gl~lFvy~vG~~~Gp~Ff~~l~~~g~~~~~~a-~~~~~~~~~~~~~~~~ 110 (562)
T TIGR03802 43 IVAVLIGQL----GIQIDPGVKA-------VFFALFIFAIGYEVGPQFFASLKKDGLREIILA-LVFAVSGLITVYALAK 110 (562)
T ss_pred HHHHHHHhc----CCCCChHHHH-------HHHHHHHHHhhhccCHHHHHHHHhccHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 344444444 7788876443 223333445555544321 1122234444443 3334455567777778
Q ss_pred HhCCChHHHHHH
Q 007420 543 AVGLRGVLLHVA 554 (604)
Q Consensus 543 lLgLd~~~~~Vl 554 (604)
++++|.....-+
T Consensus 111 ~~g~~~~~~~Gl 122 (562)
T TIGR03802 111 IFGLDKGTAAGL 122 (562)
T ss_pred HhCCCHHHHHHH
Confidence 899986654433
No 74
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=26.98 E-value=2.1e+02 Score=34.61 Aligned_cols=28 Identities=14% Similarity=0.108 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHH
Q 007420 446 LILIMVWRKLIRNPNTYSSLIGLVWSLV 473 (604)
Q Consensus 446 ~il~~vlkklLkNPiIIAiILGLilsll 473 (604)
+.+.+.+|++++||+.+..+++-++-..
T Consensus 379 kdfp~s~~~ll~N~if~~~~l~~~~~~~ 406 (735)
T KOG3626|consen 379 KDFPKSIKRLLSNPIFMLVVLASVIESL 406 (735)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 3567788999999999999998887665
No 75
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=25.97 E-value=4.4e+02 Score=28.82 Aligned_cols=61 Identities=20% Similarity=0.136 Sum_probs=43.1
Q ss_pred hHH-HHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHHHHH
Q 007420 459 PNT-YSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFS 525 (604)
Q Consensus 459 PiI-IAiILGLilsll~~~~gI~LP~~L~~~L~~LG~aaiPLALf~IG~sLa~~~~~~~~~~k~vl~i 525 (604)
|-+ ++.++..+++-+ + .+|+.+.+.++.+++...-++|.++|.....++. ++..+|..+..
T Consensus 252 P~FvlgFl~~~~l~S~----~-~lp~~~~~~l~~~~~~ll~~AmaaiGl~t~~~~l-~~~G~kp~~~g 313 (335)
T TIGR00698 252 PWFAVLFIGVAIFNSF----D-LLPGEVVQALVPLDTFLLATAMAALGLTTNVSAV-KKAGVKPLFAS 313 (335)
T ss_pred ChHHHHHHHHHHHHHh----h-hCcHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHH-HHcCchHHHHH
Confidence 543 444444444544 3 4789999999999999999999999999998763 34455554443
No 76
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=25.63 E-value=1.1e+03 Score=27.19 Aligned_cols=73 Identities=19% Similarity=0.114 Sum_probs=39.8
Q ss_pred HhchHH-HHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHHHHHHHHHHHHHH
Q 007420 456 IRNPNT-YSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGP 534 (604)
Q Consensus 456 LkNPiI-IAiILGLilsll~~~~gI~LP~~L~~~L~~LG~aaiPLALf~IG~sLa~~~~~~~~~~k~vl~iv~iKLIV~P 534 (604)
++-|.. .-+++|+++...+....+++++. .+-....|.-||..|..+.... .++.++.+....+.= ++.+
T Consensus 20 ~~lP~~v~lil~Gi~lg~~~~~~~~~~~~~------~~~~~~Lp~lLF~~g~~~~~~~--l~~~~~~i~~la~~~-vlit 90 (525)
T TIGR00831 20 IRLPYPIALILAGLLLGLAGLLPEVPLDRE------IVLFLFLPPLLFEAAMNTDLRE--LRENFRPIALIAFLL-VVVT 90 (525)
T ss_pred cCCCHHHHHHHHHHHHHhccccCCCCCCHH------HHHHHHHHHHHHHHHhcCCHHH--HHHHHHHHHHHHHHH-HHHH
Confidence 466654 44455777775411112333332 2233688999999999998764 344555555444443 3334
Q ss_pred HHH
Q 007420 535 AVM 537 (604)
Q Consensus 535 LLa 537 (604)
.++
T Consensus 91 ~~~ 93 (525)
T TIGR00831 91 TVV 93 (525)
T ss_pred HHH
Confidence 333
No 77
>PF07330 DUF1467: Protein of unknown function (DUF1467); InterPro: IPR009935 This family consists of several bacterial proteins of around 90 residues in length. The function of this family is unknown.
Probab=24.35 E-value=2.3e+02 Score=25.25 Aligned_cols=10 Identities=30% Similarity=0.587 Sum_probs=5.4
Q ss_pred cCCCCCCCcC
Q 007420 420 ESNNNEGEKV 429 (604)
Q Consensus 420 ~~~~~~~~~~ 429 (604)
++..|++|++
T Consensus 27 rtq~E~g~vv 36 (85)
T PF07330_consen 27 RTQDEAGEVV 36 (85)
T ss_pred cccCcCCCcC
Confidence 4444556666
No 78
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=23.88 E-value=9.2e+02 Score=25.89 Aligned_cols=55 Identities=18% Similarity=0.195 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhccchhhH-HHHHHHHcCCChhHHHHH
Q 007420 525 SMAVRFLTGPAVMAAASIAVGLRGVLLHVAIVQAALPQGIV-PFVFAKEYNVHPDILSTG 583 (604)
Q Consensus 525 iv~iKLIV~PLLa~ll~~lLgLd~~~~~VlVL~AAmPtAv~-s~IlA~~YG~d~elAAs~ 583 (604)
.++.=+++.-+..|.+.+.-++|.. .-+++++|-+.+ ..++|+++|.|...++..
T Consensus 60 ~~~~~~~~~~~~~~~l~r~~~~d~~----TA~~~~~PGg~s~m~~la~~~gad~~~Va~~ 115 (318)
T PF05145_consen 60 LLVVTLLLSLVGAWLLRRISGLDRA----TAFFASMPGGLSEMVALAEEYGADTRRVALV 115 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChh----HHHHHcCCccHHHHHHHHHHcCCChhhhHHH
Confidence 3333333333444444444455543 356778998554 456799999998876543
No 79
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=23.38 E-value=3.5e+02 Score=27.20 Aligned_cols=44 Identities=16% Similarity=0.246 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccch
Q 007420 461 TYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQP 512 (604)
Q Consensus 461 IIAiILGLilsll~~~~gI~LP~~L~~~L~~LG~aaiPLALf~IG~sLa~~~ 512 (604)
+.+.++|+++..+ .. .| .+..+.+.....-+-||.+|+.+...+
T Consensus 2 l~~li~Gi~lG~~----~~-~~---~~~~~~~~~~~L~lLLF~VGi~lG~~~ 45 (191)
T PF03956_consen 2 LIALILGILLGYF----LR-PP---FSLIDKISTYALYLLLFLVGIDLGSNR 45 (191)
T ss_pred eeeHHHHHHHHHH----hc-cc---ccccccHHHHHHHHHHHHHHHHhcCCH
Confidence 3456778877776 22 22 222367777889999999999998764
No 80
>PF04235 DUF418: Protein of unknown function (DUF418); InterPro: IPR007349 Tihs is a probable integral membrane protein. It is usually found associated with (IPR007299 from INTERPRO).
Probab=23.35 E-value=6.3e+02 Score=23.78 Aligned_cols=65 Identities=15% Similarity=0.133 Sum_probs=33.9
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHhhcCCCCCccHHHHHHHHHHHHH-HHHHHHHHHHHhhcCCccc
Q 007420 36 PDQCSGINRFVALFAVPLLSFHFISSNDPYKMNLRFIAADTLQKII-VLVVLAIWSKLSKRGCLEW 100 (604)
Q Consensus 36 ~~~~~~LnrFVf~~ALPALLF~~IA~~dl~~l~~~fl~ay~Lg~li-vfll~~llar~~~r~~~~~ 100 (604)
+-.--.|+.++....+=.++|....-.-.+++.......+.++..+ ..+++.+|.|+++++|.|+
T Consensus 89 ~~GrmaLT~Yi~qsii~~~lf~~~~l~l~~~~~~~~~~~~~~~i~~~q~~~s~~W~~~f~~GPlE~ 154 (163)
T PF04235_consen 89 AVGRMALTNYILQSIIGTLLFYGYGLGLFGHLSPAQSLLIALGIWVVQLLFSYLWLRRFRRGPLEW 154 (163)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcHHH
Confidence 3444555666666555556664443222334433333333333333 2334466788888888874
No 81
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=22.90 E-value=80 Score=29.33 Aligned_cols=23 Identities=9% Similarity=0.148 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 007420 69 LRFIAADTLQKIIVLVVLAIWSK 91 (604)
Q Consensus 69 ~~fl~ay~Lg~livfll~~llar 91 (604)
|.+++.+++..++++++++...+
T Consensus 2 W~l~~iii~~i~l~~~~~~~~~r 24 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFLFYCHNR 24 (130)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHH
Confidence 55666666555555554444433
No 82
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=22.00 E-value=1.3e+03 Score=26.91 Aligned_cols=41 Identities=20% Similarity=0.301 Sum_probs=28.2
Q ss_pred HHHHHhCCChHHHHHHH---------HHhccchhhHHHHHHHHcCCChhH
Q 007420 539 AASIAVGLRGVLLHVAI---------VQAALPQGIVPFVFAKEYNVHPDI 579 (604)
Q Consensus 539 ll~~lLgLd~~~~~VlV---------L~AAmPtAv~s~IlA~~YG~d~el 579 (604)
-....+|.+|+..|++. +.--+|--.....++|||+.+...
T Consensus 413 PM~m~lg~sP~~tQ~aYRigDS~TN~ItPl~~yf~lil~~~qkY~k~~gi 462 (502)
T PF03806_consen 413 PMFMLLGYSPALTQAAYRIGDSSTNIITPLMPYFPLILGFAQKYDKKAGI 462 (502)
T ss_pred HHHHHcCCCHHHHHHHHHhccccccccCccHHHHHHHHHHHHHhCcCccH
Confidence 34456789998887775 333455566777889999877543
No 83
>PF11992 DUF3488: Domain of unknown function (DUF3488); InterPro: IPR021878 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 323 to 339 amino acids in length. This domain is found associated with PF01841 from PFAM. This domain has a conserved PLW sequence motif. This domain contains 6 transmembrane helices.
Probab=21.32 E-value=1e+03 Score=25.46 Aligned_cols=21 Identities=33% Similarity=0.597 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 007420 582 TGVIFGMLIALPITLVYYILL 602 (604)
Q Consensus 582 s~VllSTLLSLpl~i~l~lLL 602 (604)
.....-.+.++|+++++++++
T Consensus 157 ~~~~~l~l~alpl~~vlFl~f 177 (325)
T PF11992_consen 157 RRALKLLLQALPLALVLFLLF 177 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 333444456688888777764
No 84
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=20.32 E-value=3.4e+02 Score=29.21 Aligned_cols=119 Identities=10% Similarity=0.038 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHhhhh-hccccChhHHHHH---HHHHHHHHhHHHHHHHhhcCCCCCc---cHHHHHHHHHHHHHHHHHH
Q 007420 14 MVPLYVAMILAYGSVK-WWKIFTPDQCSGI---NRFVALFAVPLLSFHFISSNDPYKM---NLRFIAADTLQKIIVLVVL 86 (604)
Q Consensus 14 ilPIFlLI~LGyla~R-~rg~~s~~~~~~L---nrFVf~~ALPALLF~~IA~~dl~~l---~~~fl~ay~Lg~livfll~ 86 (604)
+-+..+-|.+|.+.+. + --.++...+++ .|..+++++=.|= .+.++.++ -+.-+....+....++.+.
T Consensus 26 l~~~~~AillG~~i~n~~-~~~~~~~~~Gi~~~~k~~Lr~gIVLlG----~~l~~~~i~~~G~~~~~~~~~~v~~~~~~~ 100 (305)
T PF03601_consen 26 LGALLIAILLGMLIGNLF-FGLPARFKPGIKFSSKKLLRLGIVLLG----FRLSFSDILALGWKGLLIIIIVVILTFLLT 100 (305)
T ss_pred ccHHHHHHHHHHHHhhhc-cCCcHHHHhHHHHHHHHHHHHHHHHHC----ccccHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 3466777888888885 3 33444443443 3566666654443 34455555 3434555666667777777
Q ss_pred HHHH-HHhhcCCcccceeeeee--ccCCccccchHHHHhhhhccchhhHHHHHHHH
Q 007420 87 AIWS-KLSKRGCLEWTITLFSV--STLPNTLVMGIPLLKGMYGEFSGSLMVQIVVL 139 (604)
Q Consensus 87 ~lla-r~~~r~~~~~~aaV~gl--asfsNtgfIGiPIl~alfG~~a~~~valiv~v 139 (604)
+++. |+++-+++. +.+.+- +-+++++.+...=+...=.++-...++.+.++
T Consensus 101 ~~lg~r~~~l~~~~--~~Lia~GtsICG~SAi~A~a~~i~a~~~~~a~ava~V~lf 154 (305)
T PF03601_consen 101 YWLGRRLFGLDRKL--AILIAAGTSICGASAIAATAPVIKAKEEDVAYAVATVFLF 154 (305)
T ss_pred HHHHHHHhCCCHHH--HHHHHhhcccchHHHHHHHcccccCCCCceeeeehHHHHH
Confidence 7776 655543222 455554 35577777776655555555543344443333
No 85
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=20.19 E-value=2.6e+02 Score=28.57 Aligned_cols=63 Identities=11% Similarity=0.137 Sum_probs=33.5
Q ss_pred CCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 007420 479 VQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMAAASI 542 (604)
Q Consensus 479 I~LP~~L~~~L~~LG~aaiPLALf~IG~sLa~~~~~~~~~~k~vl~iv~iKLIV~PLLa~ll~~ 542 (604)
+++|++..+.=..--..+..+.++.+|..+...... .......++++++=++..|+...+++.
T Consensus 28 lRfPD~YtRLHAATKa~TLGv~LILlgv~l~~~~~~-~~~slklLLiIvFllLTaPVaSHaIAR 90 (197)
T PRK12585 28 IRLPDVYTRTHAAGISNTFGVSLLLFATVGYFFHSG-EGFNARVLLAVLFIFLTTPVASHLINR 90 (197)
T ss_pred HhcCcHHHHhhccccchhhhHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478988776544444455566777777555332100 011123334444456777777666653
Done!