Query 007420
Match_columns 604
No_of_seqs 323 out of 1617
Neff 4.7
Searched_HMMs 29240
Date Tue Mar 26 01:22:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007420.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007420hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zux_A Transporter, ASBTNM; tr 99.1 1.1E-09 3.7E-14 114.0 17.1 141 449-598 10-151 (332)
2 3zux_A Transporter, ASBTNM; tr 94.6 0.11 3.8E-06 53.8 9.5 78 70-154 229-309 (332)
3 3s0x_A Peptidase A24B, FLAK do 47.0 1.5E+02 0.005 29.5 11.3 45 42-91 35-79 (237)
4 2zy9_A Mg2+ transporter MGTE; 46.8 2.7E+02 0.0091 29.7 14.2 91 497-589 356-453 (473)
5 3rhw_A Avermectin-sensitive gl 22.0 2.5E+02 0.0086 28.4 8.5 27 8-38 215-241 (347)
6 2kdc_A Diacylglycerol kinase; 10.2 7E+02 0.024 22.1 7.1 64 535-598 39-115 (121)
7 2rpq_B Activating transcriptio 10.2 90 0.0031 23.9 1.0 34 324-358 6-39 (49)
8 2jwa_A Receptor tyrosine-prote 9.9 3.2E+02 0.011 20.5 3.9 28 68-95 10-37 (44)
9 4ev6_A Magnesium transport pro 6.4 6.1E+02 0.021 25.5 5.6 20 48-67 287-306 (339)
10 3o7q_A L-fucose-proton symport 6.3 1.5E+03 0.053 21.7 8.5 24 449-472 248-271 (438)
No 1
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=99.12 E-value=1.1e-09 Score=113.99 Aligned_cols=141 Identities=13% Similarity=0.059 Sum_probs=114.9
Q ss_pred HHHHHHHHhchHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhh-hhcchhHHHHHHH
Q 007420 449 IMVWRKLIRNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRI-IACGNSIAAFSMA 527 (604)
Q Consensus 449 ~~vlkklLkNPiIIAiILGLilsll~~~~gI~LP~~L~~~L~~LG~aaiPLALf~IG~sLa~~~~~-~~~~~k~vl~iv~ 527 (604)
+++. +.+.++..+.++++.++.++ .|+... .++..-..+.++.||..|+.+...+.. ..++++......+
T Consensus 10 ~~~~-~~l~~~~~l~i~~~~~lg~~-------~P~~~~-~~~~~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~ 80 (332)
T 3zux_A 10 SKIS-SFIGKTFSLWAALFAAAAFF-------APDTFK-WAGPYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVI 80 (332)
T ss_dssp HHHH-HHHHHTHHHHHHHHHHHHHH-------CGGGTG-GGGGGHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHH-------cchhhh-hhHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHH
Confidence 3433 45678889999999888887 454322 233444568899999999999987632 1246677778899
Q ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHHHHhccchhhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHH
Q 007420 528 VRFLTGPAVMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVY 598 (604)
Q Consensus 528 iKLIV~PLLa~ll~~lLgLd~~~~~VlVL~AAmPtAv~s~IlA~~YG~d~elAAs~VllSTLLSLpl~i~l 598 (604)
.+++++|++++.+++++++++.....+++++++|+++.+++++..+|+|.+++...+.+||++++.+++.+
T Consensus 81 ~~~vi~Pll~~~l~~~~~l~~~~~~Glil~~~~P~~~~s~v~t~~a~Gd~~la~~~~~~stll~~~~~Pl~ 151 (332)
T 3zux_A 81 AQFAIMPATAWCLSKLLNLPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAI 151 (332)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCTHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHHHHhcCCchhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999995444433
No 2
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=94.60 E-value=0.11 Score=53.81 Aligned_cols=78 Identities=12% Similarity=0.034 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCcccceeeeee-ccCCccccchHHHHhhhhc--cchhhHHHHHHHHHHHHHHH
Q 007420 70 RFIAADTLQKIIVLVVLAIWSKLSKRGCLEWTITLFSV-STLPNTLVMGIPLLKGMYG--EFSGSLMVQIVVLQCIIWYT 146 (604)
Q Consensus 70 ~fl~ay~Lg~livfll~~llar~~~r~~~~~~aaV~gl-asfsNtgfIGiPIl~alfG--~~a~~~valiv~v~~lIl~p 146 (604)
..+....+-.++.|+++++++|+++.++.| ..-.++ ++.-|+ -+|+|+....|| +..+.|.+++..+|++.
T Consensus 229 ~v~~~~~l~~~~~~~lg~~~~r~~~~~~~~--~~ti~~e~G~qNs-~lai~lA~~~F~~~p~~alp~~iy~~~q~i~--- 302 (332)
T 3zux_A 229 LIFAVVVLHNGIGYLLGFFAAKWTGLPYDA--QKALTIEVGMQNS-GLAAALAAAHFAAAPVVAVPGALFSVWHNIS--- 302 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCHHH--HHHHHHHHHCCCH-HHHHHHHHHHSTTCGGGGHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHhH--hhhhhhhhhhccH-HHHHHHHHHHcCCCchHHHHHHHHHHHHHHH---
Confidence 333344444455666667777766553334 233455 677888 599999999995 44555666666666544
Q ss_pred HHHHHHHH
Q 007420 147 LMLFMFEY 154 (604)
Q Consensus 147 l~lvLmE~ 154 (604)
+.++...
T Consensus 303 -~~~la~~ 309 (332)
T 3zux_A 303 -GSLLATY 309 (332)
T ss_dssp -HHHHHHH
T ss_pred -HHHHHHH
Confidence 4444443
No 3
>3s0x_A Peptidase A24B, FLAK domain protein; preflagellin peptidase, GXGD protease, aspartyl protease, intramembrane proteolysis; 3.60A {Methanococcus maripaludis}
Probab=47.02 E-value=1.5e+02 Score=29.53 Aligned_cols=45 Identities=16% Similarity=0.174 Sum_probs=23.9
Q ss_pred HHHHHHHHHhHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Q 007420 42 INRFVALFAVPLLSFHFISSNDPYKMNLRFIAADTLQKIIVLVVLAIWSK 91 (604)
Q Consensus 42 LnrFVf~~ALPALLF~~IA~~dl~~l~~~fl~ay~Lg~livfll~~llar 91 (604)
+.-...-.++|..++...... +|.++..++++.+++|++++++.+
T Consensus 35 l~~~ll~~gi~l~~~~~~~~~-----~~~~l~~~~~~~~i~f~l~~~lf~ 79 (237)
T 3s0x_A 35 IWIFLAVFGVLFAIYSSITLL-----DYSILINSISGFVICFILGYMMFL 79 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-----CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcccc-----cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444555555443211 355666667777777776655544
No 4
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=46.84 E-value=2.7e+02 Score=29.71 Aligned_cols=91 Identities=11% Similarity=-0.047 Sum_probs=51.8
Q ss_pred HHHHHHHHhhhcccchh--hhhcchhHHHHHHHHHHHHHHHHHHHHHHHhCCCh-----HHHHHHHHHhccchhhHHHHH
Q 007420 497 LGMAMFSLGLFMALQPR--IIACGNSIAAFSMAVRFLTGPAVMAAASIAVGLRG-----VLLHVAIVQAALPQGIVPFVF 569 (604)
Q Consensus 497 iPLALf~IG~sLa~~~~--~~~~~~k~vl~iv~iKLIV~PLLa~ll~~lLgLd~-----~~~~VlVL~AAmPtAv~s~Il 569 (604)
--.++++=|+.+...+. ..+.-+|.+....+.=+++..++....+++++ .. ....++.++.|.=.++..+++
T Consensus 356 q~~t~~ir~la~~~~~~~~~~~~~~ke~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~v~~a~~~~~~~a~~~g~~~p~~ 434 (473)
T 2zy9_A 356 QSATLIIRALATRDLDLRDWRRVFLKEMGVGLLLGLTLSFLLVGKVYWDGH-PLLLPVVGVSLVLIVFFANLVGAMLPFL 434 (473)
T ss_dssp HHHHHHHHHHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-TTSHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555656554331 11223445555555555555555444444445 21 123334445566678888999
Q ss_pred HHHcCCChhHHHHHHHHHHH
Q 007420 570 AKEYNVHPDILSTGVIFGML 589 (604)
Q Consensus 570 A~~YG~d~elAAs~VllSTL 589 (604)
..++|.||..+++ .++||+
T Consensus 435 ~~~~~~DPa~~s~-p~itt~ 453 (473)
T 2zy9_A 435 LRRLGVDPALVSN-PLVATL 453 (473)
T ss_dssp HHHHTCCGGGSCH-HHHHHH
T ss_pred HHHcCCCcccccc-chHHHH
Confidence 9999999998865 456665
No 5
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=21.99 E-value=2.5e+02 Score=28.36 Aligned_cols=27 Identities=15% Similarity=0.354 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccccChhH
Q 007420 8 YHVMTAMVPLYVAMILAYGSVKWWKIFTPDQ 38 (604)
Q Consensus 8 l~ILsiilPIFlLI~LGyla~R~rg~~s~~~ 38 (604)
..+++.++|.++++++-++.-+ ++++.
T Consensus 215 ~y~~~l~iP~~li~~ls~~sF~----lp~~~ 241 (347)
T 3rhw_A 215 FYLLQLYIPSCMLVIVSWVSFW----FDRTA 241 (347)
T ss_dssp HHHHHTHHHHHHHHHHHHTTTT----SCTTC
T ss_pred EEEEEeehhHHHHHHHhheEEe----ccCCC
Confidence 4578899999999999999888 56554
No 6
>2kdc_A Diacylglycerol kinase; membrane protein, solution kinase, DAGK, cell inner membrane, cell membrane, membrane, phospholipid biosynthesis; NMR {Escherichia coli}
Probab=10.22 E-value=7e+02 Score=22.11 Aligned_cols=64 Identities=14% Similarity=0.133 Sum_probs=35.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhccch---hhHHHHHHH------HcCCC----hhHHHHHHHHHHHHHHHHHHHH
Q 007420 535 AVMAAASIAVGLRGVLLHVAIVQAALPQ---GIVPFVFAK------EYNVH----PDILSTGVIFGMLIALPITLVY 598 (604)
Q Consensus 535 LLa~ll~~lLgLd~~~~~VlVL~AAmPt---Av~s~IlA~------~YG~d----~elAAs~VllSTLLSLpl~i~l 598 (604)
+++..+.++++++..+...+++...+-. ..|+.+=+. +|+-. .|.+|..|+++.+.++.+...+
T Consensus 39 ~~~i~~~~~l~~s~~e~~~li~~i~lVl~~EllNTAIE~vvD~v~~e~h~lak~AKD~aaaAVlv~~~~a~~v~~~i 115 (121)
T 2kdc_A 39 LLAVVIACWLDVDAITRVLLISSVMLVMIVEILNSAIEAVVDRIGSEYHELSGRAKDMGSAAVLIAIIVAVITWCIL 115 (121)
T ss_dssp HHHHHHHHHCCCCCSHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCSCTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455678888766555555443332 223332111 22221 4788999999998887665443
No 7
>2rpq_B Activating transcription factor 7-interacting protein 1; SUMO, SIM, nucleus, UBL conjugation, UBL conjugation pathway, activator; NMR {Homo sapiens}
Probab=10.18 E-value=90 Score=23.91 Aligned_cols=34 Identities=32% Similarity=0.461 Sum_probs=22.1
Q ss_pred cccccchhhhhhcccccccCCCCCCCCCCcccccc
Q 007420 324 TRVNASANKKAINGQAQQKGEDGAGAGAGARDLHM 358 (604)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (604)
..+.+|.|||+.....|-.---|.-.| |.-||.|
T Consensus 6 kT~dssvnKraaesttqs~katg~dsg-GVIDLTl 39 (49)
T 2rpq_B 6 KTIDASVSKKAADSTSQCGKATGSDSS-GVIDLTM 39 (49)
T ss_pred cccccccchhhccCcchhheeecCCCC-ceEEeee
Confidence 347789999998887765433333333 7777765
No 8
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=9.88 E-value=3.2e+02 Score=20.53 Aligned_cols=28 Identities=25% Similarity=0.354 Sum_probs=16.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 007420 68 NLRFIAADTLQKIIVLVVLAIWSKLSKR 95 (604)
Q Consensus 68 ~~~fl~ay~Lg~livfll~~llar~~~r 95 (604)
..+.+++..+|.++.++++..+..|++|
T Consensus 10 ~~~~Ia~~vVGvll~vi~~l~~~~~~RR 37 (44)
T 2jwa_A 10 PLTSIISAVVGILLVVVLGVVFGILIKR 37 (44)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHhheeh
Confidence 4566788888855555544444444444
No 9
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=6.35 E-value=6.1e+02 Score=25.49 Aligned_cols=20 Identities=5% Similarity=-0.232 Sum_probs=15.5
Q ss_pred HHHhHHHHHHHhhcCCCCCc
Q 007420 48 LFAVPLLSFHFISSNDPYKM 67 (604)
Q Consensus 48 ~~ALPALLF~~IA~~dl~~l 67 (604)
-+.+|.-+..++-..++..+
T Consensus 287 ~IflP~T~IaGiyGMNf~~m 306 (339)
T 4ev6_A 287 TIFAVPMWITGIYGMNFSYL 306 (339)
T ss_dssp HHSSHHHHHHHHTTCCCSCC
T ss_pred HHHHHHHHHHhhccCcCCCC
Confidence 35578888899999988754
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=6.35 E-value=1.5e+03 Score=21.73 Aligned_cols=24 Identities=8% Similarity=-0.016 Sum_probs=16.3
Q ss_pred HHHHHHHHhchHHHHHHHHHHHHH
Q 007420 449 IMVWRKLIRNPNTYSSLIGLVWSL 472 (604)
Q Consensus 449 ~~vlkklLkNPiIIAiILGLilsl 472 (604)
++.+++++++|.++..+++..+..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~ 271 (438)
T 3o7q_A 248 SASLSRLARIRHWRWAVLAQFCYV 271 (438)
T ss_dssp HHHHHHHTTCSHHHHHHHHHHHHH
T ss_pred hhhHHHHHhChHHHHHHHHHHHHH
Confidence 345677888998877776655443
Done!