Query 007420
Match_columns 604
No_of_seqs 323 out of 1617
Neff 4.7
Searched_HMMs 13730
Date Tue Mar 26 01:22:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007420.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007420hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 26.5 1.8E+02 0.013 26.0 10.5 18 13-30 295-312 (447)
2 d2e74f1 f.23.25.1 (F:1-32) Pet 14.8 74 0.0054 20.5 3.2 20 10-29 5-24 (32)
3 d1oedc_ f.36.1.1 (C:) Acetylch 9.0 86 0.0062 27.6 3.0 23 7-29 2-24 (260)
4 d1pv7a_ f.38.1.2 (A:) Lactose 7.3 6E+02 0.044 21.2 8.4 24 102-125 347-373 (417)
5 d1oede_ f.36.1.1 (E:) Acetylch 6.9 55 0.004 29.2 0.5 22 8-29 3-24 (260)
6 d1e5ka_ c.68.1.8 (A:) Molybden 6.1 83 0.006 25.8 1.2 14 263-276 8-21 (188)
7 d1u00a2 b.130.1.1 (A:389-503) 5.9 1.7E+02 0.012 23.5 3.1 45 168-212 59-103 (115)
8 d1oeda_ f.36.1.1 (A:) Acetylch 5.7 1.8E+02 0.013 25.1 3.4 22 8-29 3-24 (227)
9 d2iuba2 f.17.3.1 (A:286-349) M 4.7 2.4E+02 0.018 20.0 3.0 23 45-67 11-33 (64)
10 d2faza1 d.15.1.1 (A:1-76) Ubiq 3.8 1.9E+02 0.014 21.3 1.7 36 174-209 37-76 (76)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=26.46 E-value=1.8e+02 Score=26.03 Aligned_cols=18 Identities=11% Similarity=0.010 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 007420 13 AMVPLYVAMILAYGSVKW 30 (604)
Q Consensus 13 iilPIFlLI~LGyla~R~ 30 (604)
.+.-++..+..|++..|.
T Consensus 295 ~~~~~~~~~~~g~~~~~~ 312 (447)
T d1pw4a_ 295 EYAGIPGTLLCGWMSDKV 312 (447)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred hhhhhhhhhhhhhhhhhc
Confidence 344455566667777774
No 2
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=14.79 E-value=74 Score=20.51 Aligned_cols=20 Identities=10% Similarity=0.195 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 007420 10 VMTAMVPLYVAMILAYGSVK 29 (604)
Q Consensus 10 ILsiilPIFlLI~LGyla~R 29 (604)
++++.+--|.+|++||.++-
T Consensus 5 il~aa~lsfglifvgwglga 24 (32)
T d2e74f1 5 MLYAALLSFGLIFVGWGLGV 24 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhHHHH
Confidence 56666778999999998765
No 3
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=9.04 E-value=86 Score=27.57 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 007420 7 FYHVMTAMVPLYVAMILAYGSVK 29 (604)
Q Consensus 7 Ml~ILsiilPIFlLI~LGyla~R 29 (604)
++.+++.++|.+++.++-++.-+
T Consensus 2 l~y~~n~~~P~~~~~~l~~~~f~ 24 (260)
T d1oedc_ 2 LFYVINFITPCVLISFLASLAFY 24 (260)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEhHHHHHHHHHHHHHHHee
Confidence 35688999999999999988877
No 4
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=7.29 E-value=6e+02 Score=21.25 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=11.3
Q ss_pred eeeeee-ccCCc-cc-cchHHHHhhhh
Q 007420 102 ITLFSV-STLPN-TL-VMGIPLLKGMY 125 (604)
Q Consensus 102 aaV~gl-asfsN-tg-fIGiPIl~alf 125 (604)
+...++ .+..+ .+ .+|.++...++
T Consensus 347 ~~~~~~~~~~~~~~g~~i~~~~~G~l~ 373 (417)
T d1pv7a_ 347 ATIYLVCFCFFKQLAMIFMSVLAGNMY 373 (417)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455554 34444 33 45555544444
No 5
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=6.88 E-value=55 Score=29.16 Aligned_cols=22 Identities=9% Similarity=0.105 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 007420 8 YHVMTAMVPLYVAMILAYGSVK 29 (604)
Q Consensus 8 l~ILsiilPIFlLI~LGyla~R 29 (604)
+.+++.++|.+++..+-++.-+
T Consensus 3 yY~~~lilP~~li~~ls~~~F~ 24 (260)
T d1oede_ 3 FYIINIIAPCVLISSLVVLVYF 24 (260)
T ss_dssp SHHHHHHTHHHHHHHHHHHHHH
T ss_pred EEEEhHHHHHHHHHHHHHHheE
Confidence 3578899999999999998888
No 6
>d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Escherichia coli [TaxId: 562]}
Probab=6.14 E-value=83 Score=25.81 Aligned_cols=14 Identities=36% Similarity=0.888 Sum_probs=11.7
Q ss_pred hhcCCCCCCCCCcc
Q 007420 263 MMAGGRSSNFGATD 276 (604)
Q Consensus 263 ~~~~~~~~~~~~~~ 276 (604)
.+|||+|+-+|.+|
T Consensus 8 ILAgG~ssRmG~~~ 21 (188)
T d1e5ka_ 8 VLAGGKARRMGGVD 21 (188)
T ss_dssp EECCCCCSSSCSSC
T ss_pred EEcCCCCcCCCCCC
Confidence 57999999998654
No 7
>d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]}
Probab=5.87 E-value=1.7e+02 Score=23.48 Aligned_cols=45 Identities=16% Similarity=0.192 Sum_probs=32.8
Q ss_pred CcCccceeeccccccccCCCCCccchhhhccCCceEEEEeecCCC
Q 007420 168 TAGSIVSIHVDSDIMSLDGRQPLETDAEIKEDGKLHVTVRKSNAS 212 (604)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (604)
.+..++.+.++..--.--|..+.+..-++.++|.|||+.+.-.-.
T Consensus 59 ~N~~lg~~~l~~ip~~p~G~~~I~Vtf~id~nGiL~V~A~d~~tg 103 (115)
T d1u00a2 59 DCRSLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTG 103 (115)
T ss_dssp GSEEEEEEEECCCCCCSTTCSCEEEEEEECTTCCEEEEEEETTTC
T ss_pred cceEeeEEEEeCcccCccccccEEEEEEccCCceEEEEEEECCCC
Confidence 355666666665555556777788888999999999999765433
No 8
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=5.66 E-value=1.8e+02 Score=25.07 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 007420 8 YHVMTAMVPLYVAMILAYGSVK 29 (604)
Q Consensus 8 l~ILsiilPIFlLI~LGyla~R 29 (604)
+.+++.++|.++++.+-++.-+
T Consensus 3 yy~~~li~P~~li~~ls~~~F~ 24 (227)
T d1oeda_ 3 YFVVNVIIPCLLFSFLTGLVFY 24 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEehHHHHHHHHHHHHHHHhe
Confidence 4578899999999999998888
No 9
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=4.74 E-value=2.4e+02 Score=19.99 Aligned_cols=23 Identities=22% Similarity=0.092 Sum_probs=11.3
Q ss_pred HHHHHHhHHHHHHHhhcCCCCCc
Q 007420 45 FVALFAVPLLSFHFISSNDPYKM 67 (604)
Q Consensus 45 FVf~~ALPALLF~~IA~~dl~~l 67 (604)
.+--+.+|.-+..++-..+..++
T Consensus 11 ~it~iflP~t~i~gifGMN~~~~ 33 (64)
T d2iuba2 11 IIATIFMPLTFIAGIYGMNFEYM 33 (64)
T ss_dssp HHHHHHHHHHHHTTSCC------
T ss_pred HHHHHHHHHHHHHhhhccCCCCC
Confidence 34455677777777777766543
No 10
>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.81 E-value=1.9e+02 Score=21.29 Aligned_cols=36 Identities=19% Similarity=0.268 Sum_probs=24.5
Q ss_pred eeeccccccccCCCCC----ccchhhhccCCceEEEEeec
Q 007420 174 SIHVDSDIMSLDGRQP----LETDAEIKEDGKLHVTVRKS 209 (604)
Q Consensus 174 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 209 (604)
++..|...++..|++= .-.|..|+++..+|+.+|+|
T Consensus 37 gip~~~qrLi~~Gk~L~D~~tL~~y~I~~~sti~lv~r~s 76 (76)
T d2faza1 37 HVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQS 76 (76)
T ss_dssp CCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECCC
T ss_pred CcChHHeEEEEeeEeccCCCcHHHcCCCCCCEEEEEEEcC
Confidence 3455566666666541 22456788999999999986
Done!