Your job contains 1 sequence.
>007421
MLSVLRVHLPSDIPIVGCELTPYVLLRRPDNAVTTEDVPESAPIDGHFLRYKWYRIQSDR
KVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAASAVNENG
NEEEELFGRFNSTGSGVINASLSGSASNSSLTNGSTPLYPAAVTRSGGETWFEVGRSKTY
TPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRVIPAPSPSPRRLFPVNGSDMNMMG
HIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADI
VCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKK
YEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPGKRQLLCV
ANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKV
EPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFT
HCTRDFIGTLDYIFYTADSLSVESLLELLDEDSLRKDTALPSPEWSSDHIALLAEFRCKP
RARR
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 007421
(604 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2076426 - symbol:AT3G58560 "AT3G58560" species... 2356 1.6e-244 1
TAIR|locus:2076446 - symbol:AT3G58580 "AT3G58580" species... 2312 7.4e-240 1
UNIPROTKB|E1C5L3 - symbol:CNOT6L "Uncharacterized protein... 432 5.2e-43 2
ZFIN|ZDB-GENE-050522-302 - symbol:cnot6l "CCR4-NOT transc... 429 1.1e-42 2
UNIPROTKB|F1S5Q4 - symbol:CNOT6 "Uncharacterized protein"... 415 1.4e-42 2
UNIPROTKB|Q96LI5 - symbol:CNOT6L "CCR4-NOT transcription ... 427 1.8e-42 2
WB|WBGene00000376 - symbol:ccr-4 species:6239 "Caenorhabd... 435 1.5e-40 1
UNIPROTKB|E1BE73 - symbol:LOC100849029 "Uncharacterized p... 427 4.2e-40 1
MGI|MGI:2443154 - symbol:Cnot6l "CCR4-NOT transcription c... 426 5.3e-40 1
RGD|1309128 - symbol:Cnot6l "CCR4-NOT transcription compl... 426 5.3e-40 1
UNIPROTKB|Q9ULM6 - symbol:CNOT6 "CCR4-NOT transcription c... 422 1.4e-39 1
UNIPROTKB|Q5BJ41 - symbol:cnot6 "CCR4-NOT transcription c... 422 1.4e-39 1
MGI|MGI:2144529 - symbol:Cnot6 "CCR4-NOT transcription co... 422 1.4e-39 1
RGD|1310783 - symbol:Cnot6 "CCR4-NOT transcription comple... 422 1.4e-39 1
POMBASE|SPCC31H12.08c - symbol:ccr4 "CCR4-Not complex sub... 423 3.8e-39 1
UNIPROTKB|A6QR51 - symbol:CNOT6 "CNOT6 protein" species:9... 417 4.8e-39 1
UNIPROTKB|E2QS92 - symbol:CNOT6 "Uncharacterized protein"... 417 4.8e-39 1
UNIPROTKB|E1C678 - symbol:CNOT6 "Uncharacterized protein"... 416 6.1e-39 1
ZFIN|ZDB-GENE-071004-97 - symbol:zgc:171797 "zgc:171797" ... 411 2.1e-38 1
SGD|S000000019 - symbol:CCR4 "Component of the CCR4-NOT t... 390 4.6e-37 2
FB|FBgn0011725 - symbol:twin "twin" species:7227 "Drosoph... 402 2.0e-36 1
UNIPROTKB|F1NGS9 - symbol:PDE12 "Uncharacterized protein"... 353 3.1e-36 3
CGD|CAL0002486 - symbol:CCR4 species:5476 "Candida albica... 378 9.2e-36 2
UNIPROTKB|Q5A761 - symbol:CCR4 "Glucose-repressible alcoh... 378 9.2e-36 2
UNIPROTKB|F1RYS2 - symbol:CNOT6L "Uncharacterized protein... 383 1.4e-34 2
UNIPROTKB|Q6L8Q7 - symbol:PDE12 "2',5'-phosphodiesterase ... 327 1.0e-30 2
ZFIN|ZDB-GENE-060519-25 - symbol:pde12 "phosphodiesterase... 330 3.9e-30 2
UNIPROTKB|F1SGK9 - symbol:PDE12 "Uncharacterized protein"... 322 4.2e-30 2
UNIPROTKB|E2R412 - symbol:PDE12 "Uncharacterized protein"... 322 4.5e-30 2
RGD|1310975 - symbol:Pde12 "phosphodiesterase 12" species... 319 5.8e-30 2
MGI|MGI:2443226 - symbol:Pde12 "phosphodiesterase 12" spe... 316 2.2e-29 2
UNIPROTKB|Q08DF7 - symbol:PDE12 "2',5'-phosphodiesterase ... 308 2.0e-28 2
MGI|MGI:1196310 - symbol:Angel2 "angel homolog 2 (Drosoph... 212 7.8e-27 3
ZFIN|ZDB-GENE-030131-6498 - symbol:angel2 "angel homolog ... 225 9.7e-26 3
ASPGD|ASPL0000009331 - symbol:ccr4 species:162425 "Emeric... 316 2.3e-25 1
TAIR|locus:2028611 - symbol:AT1G31500 species:3702 "Arabi... 250 7.4e-24 3
MGI|MGI:1915987 - symbol:Angel1 "angel homolog 1 (Drosoph... 182 8.4e-22 3
UNIPROTKB|A2VE74 - symbol:CCRN4L "Uncharacterized protein... 176 8.9e-20 4
UNIPROTKB|F1PFN1 - symbol:CCRN4L "Uncharacterized protein... 172 3.3e-19 3
UNIPROTKB|I3LN01 - symbol:CCRN4L "Uncharacterized protein... 173 2.0e-18 3
MGI|MGI:109382 - symbol:Ccrn4l "CCR4 carbon catabolite re... 173 3.3e-18 3
UNIPROTKB|Q9UK39 - symbol:CCRN4L "Nocturnin" species:9606... 170 7.5e-18 3
TAIR|locus:2832132 - symbol:AT5G11350 "AT5G11350" species... 196 5.5e-17 2
ZFIN|ZDB-GENE-050208-306 - symbol:ccrn4la "CCR4 carbon ca... 182 1.4e-16 3
UNIPROTKB|F1NVT2 - symbol:CCRN4L "Uncharacterized protein... 170 1.5e-15 2
FB|FBgn0261808 - symbol:cu "curled" species:7227 "Drosoph... 154 1.2e-13 3
DICTYBASE|DDB_G0289461 - symbol:DDB_G0289461 "putative CC... 206 2.7e-13 1
TAIR|locus:504956231 - symbol:AT1G73875 "AT1G73875" speci... 136 2.7e-12 2
SGD|S000005402 - symbol:NGL1 "Putative endonuclease" spec... 168 2.1e-10 2
RGD|1587344 - symbol:Ccrn4l "CCR4 carbon catabolite repre... 164 9.4e-10 1
SGD|S000004898 - symbol:NGL2 "Protein involved in 5.8S rR... 160 1.1e-08 2
CGD|CAL0006120 - symbol:orf19.5527 species:5476 "Candida ... 154 5.5e-08 3
GENEDB_PFALCIPARUM|PFC0850c - symbol:PFC0850c "hypothetic... 150 7.1e-07 1
UNIPROTKB|O77366 - symbol:PFC0850c "Endonuclease/exonucle... 150 7.1e-07 1
SGD|S000004587 - symbol:NGL3 "3'-5' exonuclease specific ... 94 1.3e-06 4
FB|FBgn0016762 - symbol:angel "angel" species:7227 "Droso... 140 2.0e-06 1
TAIR|locus:2204863 - symbol:AT1G02270 "AT1G02270" species... 105 0.00017 2
TAIR|locus:2028696 - symbol:AT1G31530 "AT1G31530" species... 120 0.00020 1
>TAIR|locus:2076426 [details] [associations]
symbol:AT3G58560 "AT3G58560" species:3702 "Arabidopsis
thaliana" [GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=ISS] [GO:0005829 "cytosol"
evidence=IDA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] Pfam:PF03372 GO:GO:0005829
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 GO:GO:0003723 GO:GO:0090305
eggNOG:COG5239 InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0004535
EMBL:AL137082 EMBL:AF462845 EMBL:AY133538 IPI:IPI00546024
PIR:T45676 RefSeq:NP_191415.2 UniGene:At.23801 UniGene:At.67574
ProteinModelPortal:Q8W0Z9 SMR:Q8W0Z9 IntAct:Q8W0Z9 PaxDb:Q8W0Z9
PRIDE:Q8W0Z9 EnsemblPlants:AT3G58560.1 GeneID:825025
KEGG:ath:AT3G58560 TAIR:At3g58560 HOGENOM:HOG000239764
InParanoid:Q8W0Z9 KO:K12603 OMA:YATSDTY PhylomeDB:Q8W0Z9
ProtClustDB:PLN03144 Genevestigator:Q8W0Z9 Uniprot:Q8W0Z9
Length = 602
Score = 2356 (834.4 bits), Expect = 1.6e-244, P = 1.6e-244
Identities = 449/607 (73%), Positives = 504/607 (83%)
Query: 1 MLSVLRVHLPSDIPIVGCELTPYVLLRRPDNAVTTEDVPESAPIDGHFLRYKWYRIQSDR 60
MLSV+RVHLPS+IPIVGCELTPYVLLRRPD +T+DVPESAP++GHFL+Y+W+R+QSD+
Sbjct: 1 MLSVIRVHLPSEIPIVGCELTPYVLLRRPDKTPSTDDVPESAPLEGHFLKYRWFRVQSDK 60
Query: 61 KVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAASAVXXXX 120
KVA+CSVHPSE ATLQCLGC+K+K+PVAKSYHCS KCFSDAWQHHRVLH+RAASA
Sbjct: 61 KVAICSVHPSETATLQCLGCLKSKVPVAKSYHCSTKCFSDAWQHHRVLHERAASAATEGN 120
Query: 121 XXXXXLFGRFNSTGSGVINXXXXXXXXXXXXXXXXXPLYPAAVTR---SGGETWFEVGRS 177
R NS+GSG +YP+A+T+ +GGET EVGRS
Sbjct: 121 DEEE--LPRLNSSGSG-----SGVLSTSVSLTNGSSSVYPSAITQKTGAGGETLVEVGRS 173
Query: 178 KTYTPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRVIPAPSPSPRRLFPVNGSDMN 237
KTYTP ADDI HVLKFECVVV+AETK VG T+LTSRVIPAPSPSPRRL ++G+D+
Sbjct: 174 KTYTPMADDICHVLKFECVVVNAETKQNVGLSCTILTSRVIPAPSPSPRRLISISGTDVT 233
Query: 238 MMGHIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYR 297
GH+DS+GR S GTF+VLSYNILSD YA+S+ YSYCP+WAL+W YRRQNLLREI+ YR
Sbjct: 234 --GHLDSNGRPLSMGTFTVLSYNILSDTYASSDIYSYCPTWALAWTYRRQNLLREIVKYR 291
Query: 298 ADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSH 357
ADIVCLQEVQNDHFEEFF PELDKHGYQ L+KRKTNEV+ GN +TIDGCATFFRRDRFSH
Sbjct: 292 ADIVCLQEVQNDHFEEFFLPELDKHGYQGLFKRKTNEVFIGNTNTIDGCATFFRRDRFSH 351
Query: 358 VKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPGKRQL 417
VKKYEVEFNKAAQSLT+AI+P +QKKNALNRLVKDNVALIVVLEAKF +Q AD PGKRQL
Sbjct: 352 VKKYEVEFNKAAQSLTEAIIPVSQKKNALNRLVKDNVALIVVLEAKFGSQAADNPGKRQL 411
Query: 418 LCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAM 477
LCVANTHVNV ELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFN+VP SAPH LLA+
Sbjct: 412 LCVANTHVNVPHELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNTVPASAPHTLLAV 471
Query: 478 GKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEP 537
GKV+P+HPDL VDPL ILRPH+KLTHQLPLVSAYS FA++G + E QRRR+DP ++EP
Sbjct: 472 GKVDPLHPDLMVDPLGILRPHSKLTHQLPLVSAYSQFAKMGGNVITEQQRRRLDPASSEP 531
Query: 538 LFTHCTRDFIGTLDYIFYTAXXXXXXXXXXXXXXXXXRKDTALPSPEWSSDHIALLAEFR 597
LFT+CTRDFIGTLDYIFYTA RKDTALPSPEWSSDHIALLAEFR
Sbjct: 532 LFTNCTRDFIGTLDYIFYTADTLTVESLLELLDEESLRKDTALPSPEWSSDHIALLAEFR 591
Query: 598 CKPRARR 604
C PRARR
Sbjct: 592 CMPRARR 598
>TAIR|locus:2076446 [details] [associations]
symbol:AT3G58580 "AT3G58580" species:3702 "Arabidopsis
thaliana" [GO:0016787 "hydrolase activity" evidence=ISS]
[GO:0010228 "vegetative to reproductive phase transition of
meristem" evidence=RCA] Pfam:PF03372 GO:GO:0005634 GO:GO:0005737
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006355 GO:GO:0046872
GO:GO:0006351 GO:GO:0003723 GO:GO:0090305 eggNOG:COG5239
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0004535 EMBL:AL137082
HOGENOM:HOG000239764 KO:K12603 ProtClustDB:PLN03144 EMBL:AK226830
IPI:IPI00519312 PIR:T45678 RefSeq:NP_191417.2 UniGene:At.34714
ProteinModelPortal:Q9M2F8 SMR:Q9M2F8 PaxDb:Q9M2F8 PRIDE:Q9M2F8
EnsemblPlants:AT3G58580.1 GeneID:825027 KEGG:ath:AT3G58580
TAIR:At3g58580 InParanoid:Q9M2F8 OMA:ENNANED PhylomeDB:Q9M2F8
Genevestigator:Q9M2F8 Uniprot:Q9M2F8
Length = 603
Score = 2312 (818.9 bits), Expect = 7.4e-240, P = 7.4e-240
Identities = 438/607 (72%), Positives = 492/607 (81%)
Query: 1 MLSVLRVHLPSDIPIVGCELTPYVLLRRPDNAVTTEDVPESAPIDGHFLRYKWYRIQSDR 60
MLSV+RVHLPS+IPIVGCELTPYVL+RRPD TT+DVPESAP++G+FLRY+WYR+QSD+
Sbjct: 1 MLSVIRVHLPSEIPIVGCELTPYVLVRRPDKNSTTDDVPESAPLEGYFLRYRWYRVQSDK 60
Query: 61 KVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAASAVXXXX 120
KV +CSVHP+EQATLQC+ C K + V KSYHCSPKCF+DAWQHHR LH+RAA+
Sbjct: 61 KVTICSVHPTEQATLQCVFCSKRRSLVPKSYHCSPKCFTDAWQHHRTLHERAAAENNANE 120
Query: 121 XXXXXLFGRFNSTGSGVI-NXXXXXXXXXXXXXXXXXPLYPAAVT-RSGGETWFEVGRSK 178
R NS GSG + P YP+ +T ++GGET EVG K
Sbjct: 121 DDD---LNRNNSAGSGSLAGSLSGSMSNLSIANNGPAPFYPSNITQKNGGETLVEVGGCK 177
Query: 179 TYTPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRVIPAPSPSPRRLFPVNGSDMNM 238
TYTP+ADDI HVLKFECVV +AETK VGHP+T+LTSRVIPAPSPSPR+L PVNG+D
Sbjct: 178 TYTPTADDISHVLKFECVVANAETKQIVGHPSTILTSRVIPAPSPSPRKLIPVNGADG-- 235
Query: 239 MGHIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRA 298
MGH+D D RI S G+F+VLSYNILSD A+S+ YSYCP WALSW YRRQNLLREI+GYRA
Sbjct: 236 MGHLDQDARIQSAGSFTVLSYNILSDTSASSDLYSYCPPWALSWPYRRQNLLREIVGYRA 295
Query: 299 DIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHV 358
D+VCLQEVQ+DHF E FAPELDKHGYQALYKRKTNEV +G+ IDGCATFFRRDRFSHV
Sbjct: 296 DVVCLQEVQSDHFHEIFAPELDKHGYQALYKRKTNEVLSGSTSAIDGCATFFRRDRFSHV 355
Query: 359 KKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPGKRQLL 418
KKY+VEFNKAAQSLTDA++P AQK+ ALNRLVKDN+ALIVVLEAKF NQ D GKRQL+
Sbjct: 356 KKYDVEFNKAAQSLTDALIPQAQKRTALNRLVKDNIALIVVLEAKFGNQPTDPSGKRQLI 415
Query: 419 CVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMG 478
CVANTHVNV Q+LKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFN++PGSAPH LL MG
Sbjct: 416 CVANTHVNVQQDLKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNTLPGSAPHTLLVMG 475
Query: 479 KVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGV-GLGMEHQRRRMDPTTNEP 537
KV+P+HPDLAVDPL ILRPHTKLTHQLPLVSAYSSF R G+ GLG+E RRR+D TNEP
Sbjct: 476 KVDPMHPDLAVDPLNILRPHTKLTHQLPLVSAYSSFVRKGIMGLGLEQHRRRIDLNTNEP 535
Query: 538 LFTHCTRDFIGTLDYIFYTAXXXXXXXXXXXXXXXXXRKDTALPSPEWSSDHIALLAEFR 597
LFT+CTRDFIGT DYIFYTA RKDTALPSPEWSS+HIALLAEFR
Sbjct: 536 LFTNCTRDFIGTHDYIFYTADTLMVESLLELLDEDGLRKDTALPSPEWSSNHIALLAEFR 595
Query: 598 CKPRARR 604
C PR RR
Sbjct: 596 CTPRTRR 602
>UNIPROTKB|E1C5L3 [details] [associations]
symbol:CNOT6L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=IEA] [GO:0004535
"poly(A)-specific ribonuclease activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0061157 "mRNA destabilization"
evidence=IEA] InterPro:IPR001611 PROSITE:PS51450 Pfam:PF03372
GO:GO:0005737 GO:GO:0008284 GeneTree:ENSGT00550000074364
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0000288 GO:GO:0004535
OMA:YMLDNLA GO:GO:0061157 EMBL:AADN02016133 IPI:IPI00594662
Ensembl:ENSGALT00000016820 NextBio:20825132 Uniprot:E1C5L3
Length = 549
Score = 432 (157.1 bits), Expect = 5.2e-43, Sum P(2) = 5.2e-43
Identities = 123/376 (32%), Positives = 183/376 (48%)
Query: 247 RISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEV 306
+I + +F+V+ YN+L D YAT + Y YCPSWAL+W YR++ ++ EI+ ADI+ LQEV
Sbjct: 177 QILPSASFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEIVSCDADIISLQEV 236
Query: 307 QNDHFEEFFAPELDKHGYQALYKRKTNEVYNGNPHT--IDGCATFFRRDRFSHVKKYEVE 364
+ + + F P L + GY + K+ +DGCA FF+ ++FS V+K+ VE
Sbjct: 237 ETEQYFTLFLPALKERGYDGFFSPKSRAKIMSEQEKKHVDGCAIFFKTEKFSLVQKHTVE 296
Query: 365 FNKAAQSLTDAILPSAQKKNALNRLV-KDNVALIVVLEAKFSNQGADTPG---KRQLLCV 420
FN+ A + ++ + LNR++ KDN+ + VVLE GA +QLL V
Sbjct: 297 FNQVAMANSEG------SEAMLNRVMTKDNIGVAVVLEVHKELFGASIKSLHVDKQLLIV 350
Query: 421 ANTHVNVHQELKDVKLWQ----VHTLLKGLEKIAA-----SAD---IPMLVCGDFNSVPG 468
AN H++ E DVKL Q V L LEK ++ +AD IP+++C D NS+P
Sbjct: 351 ANAHMHWDPEYSDVKLIQTMMFVSELKNILEKASSRPGSPTADPNSIPLVLCADLNSLPD 410
Query: 469 SAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLG-MEHQR 527
S L+ G V H D +L + L++ +S + G G + H
Sbjct: 411 SGVVEYLSNGIVADNHKDFK-----------ELRYNECLMN-FSGSGKNGASEGRITHGF 458
Query: 528 RRMDPTTNEPL-FTHCTRDFIGTLDYIFY--TAXXXXXXXXXXXXXXXXXRKDTALPSPE 584
+ N + +T+ T DF G +DYIFY T T P P
Sbjct: 459 QLKSAYENNLMPYTNYTFDFKGVIDYIFYSNTHMNVLGVLGPLDPQWLVENNITGCPHPH 518
Query: 585 WSSDHIALLAEFRCKP 600
SDH +LL + P
Sbjct: 519 IPSDHFSLLTQLELHP 534
Score = 39 (18.8 bits), Expect = 5.2e-43, Sum P(2) = 5.2e-43
Identities = 14/60 (23%), Positives = 28/60 (46%)
Query: 223 PSPRRLFPVNGSDMNMMG---H---IDSDGRISSTGTFSVLSYNILSDVYATSESYSYCP 276
P PRR++ + ++ G H ++ GR+ S T S+ S L+ ++ + + P
Sbjct: 9 PDPRRIYTIMSAEEVANGKKSHWAELEISGRVRSLST-SLWSLTHLTALHLNDNNLTRIP 67
>ZFIN|ZDB-GENE-050522-302 [details] [associations]
symbol:cnot6l "CCR4-NOT transcription complex,
subunit 6-like" species:7955 "Danio rerio" [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
InterPro:IPR001611 PROSITE:PS51450 Pfam:PF03372
ZFIN:ZDB-GENE-050522-302 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
eggNOG:COG4886 GO:GO:0004527 GO:GO:0090305 InterPro:IPR025875
Pfam:PF12799 GeneTree:ENSGT00550000074364 InterPro:IPR005135
SUPFAM:SSF56219 KO:K12603 HOGENOM:HOG000294222 EMBL:BX640512
EMBL:BC095634 IPI:IPI00487742 RefSeq:NP_001018474.1
UniGene:Dr.76067 ProteinModelPortal:A2BHJ4 STRING:A2BHJ4
Ensembl:ENSDART00000076807 GeneID:553665 KEGG:dre:553665 CTD:246175
HOVERGEN:HBG052641 OMA:YMLDNLA OrthoDB:EOG43TZV7 NextBio:20880398
Bgee:A2BHJ4 Uniprot:A2BHJ4
Length = 559
Score = 429 (156.1 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
Identities = 121/374 (32%), Positives = 179/374 (47%)
Query: 251 TGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDH 310
T F+V+ YN+L D YAT + Y YCPSWAL+W YR++ ++ EI ADI+ LQEV+ +
Sbjct: 181 TAVFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEITNCDADIISLQEVETEQ 240
Query: 311 FEEFFAPELDKHGYQALY--KRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKA 368
+ FF L GY + K + V +DGC FF+ ++F+ V+K+ VEFN+
Sbjct: 241 YYTFFLETLKDRGYDGFFCPKSRAKLVSEQERKHVDGCGVFFKTEKFALVQKHTVEFNQV 300
Query: 369 AQSLTDAILPSAQKKNALNRLV-KDNVALIVVLEAK---FSNQGADTPGKRQLLCVANTH 424
A + ++ + LNR++ KDN+ + V+LE K F+ G P ++QLL VAN H
Sbjct: 301 AMANSEG------SEVMLNRVMTKDNIGVAVLLEVKKDLFAT-GLKPPPEKQLLLVANAH 353
Query: 425 VNVHQELKDVKLWQVHTLLKGLEKIAASAD--------------IPMLVCGDFNSVPGSA 470
++ E DVKL Q L L+ IA A IP+++C D NS+P S
Sbjct: 354 MHWDPEYSDVKLIQTMMFLSELKSIAERASGSINSSSPTSETSSIPIVLCADLNSLPDSG 413
Query: 471 PHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLG-MEHQRRR 529
L+ G V H D LR LT+ +S + G G + H +
Sbjct: 414 VVEYLSNGGVAENHKDFKE-----LRYSDCLTN-------FSCNGKNGKPDGSITHSFQL 461
Query: 530 MDPTTNEPL-FTHCTRDFIGTLDYIFYTAXXXXXXXXXXXXXXXXXRKD--TALPSPEWS 586
+ +T+ T DF G +DYIF++ + + T P P
Sbjct: 462 KSAYEGNLMPYTNYTYDFKGVIDYIFFSKTHMSVLGVLGPLETQWLKDNNITGCPHPHIP 521
Query: 587 SDHIALLAEFRCKP 600
SDH +LLA+ P
Sbjct: 522 SDHFSLLAQLEYHP 535
Score = 39 (18.8 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
Identities = 14/60 (23%), Positives = 29/60 (48%)
Query: 223 PSPRRLFPVNGSDMNMMG---H---IDSDGRISSTGTFSVLSYNILSDVYATSESYSYCP 276
P PRRL+ + ++ G H ++ GR+ S + S+ + L+ ++ + + S P
Sbjct: 9 PDPRRLYTIMSAEEVASGKKSHWTELEISGRVRSLSS-SLWTLTHLTALHINNNNLSRIP 67
>UNIPROTKB|F1S5Q4 [details] [associations]
symbol:CNOT6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000327 "positive regulation of ligand-dependent
nuclear receptor transcription coactivator activity" evidence=IEA]
InterPro:IPR001611 PROSITE:PS51450 Pfam:PF03372 InterPro:IPR003591
SMART:SM00369 InterPro:IPR025875 Pfam:PF12799
GeneTree:ENSGT00550000074364 InterPro:IPR005135 SUPFAM:SSF56219
OMA:ENNANED EMBL:CU929694 Ensembl:ENSSSCT00000015302 Uniprot:F1S5Q4
Length = 566
Score = 415 (151.1 bits), Expect = 1.4e-42, Sum P(2) = 1.4e-42
Identities = 118/374 (31%), Positives = 181/374 (48%)
Query: 247 RISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEV 306
R T FSV+ YN+L D YAT + Y YCPSWAL+W YR++ +++EI+ ADI+ LQEV
Sbjct: 191 RTRPTALFSVMCYNVLCDKYATRQLYGYCPSWALNWDYRKKAIIQEILSCNADIISLQEV 250
Query: 307 QNDHFEEFFAPELDKHGYQALY--KRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVE 364
+ + + FF EL GY + K + + +DGCA FF+ ++F+ V+K+ VE
Sbjct: 251 ETEQYYSFFLVELKDRGYSGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTVE 310
Query: 365 FNKAAQSLTDAILPSAQKKNALNRLV-KDNVALIVVLEAKFS----NQGADTPG-KRQLL 418
FN+ A + ++ + LNR++ KDN+ + V+LE + + G G ++QL+
Sbjct: 311 FNQLAMANSEG------SEAMLNRVMTKDNIGVAVLLELRKELIEISSGKPHLGTEKQLI 364
Query: 419 CVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASAD-------------IPMLVCGDFNS 465
VAN H++ E DVKL Q L ++ I A IP+++C D NS
Sbjct: 365 LVANAHMHWDPEYSDVKLVQTMMFLSEVKNIIDKASRSLQSSVLGEFGTIPLVLCADLNS 424
Query: 466 VPGSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEH 525
+P S L+ G VE H D LR + LT+ +S + G G
Sbjct: 425 LPDSGVVEYLSTGGVETNHKDFKE-----LRYNESLTN-------FSCNGKNGTTNGRIT 472
Query: 526 QRRRMDPTTNEPL--FTHCTRDFIGTLDYIFYTAXXXXXXXXXXXXXXXXXRKD--TALP 581
++ L +T+ T DF G +DYIFY+ ++ + P
Sbjct: 473 HGFKLKSAYESGLMPYTNYTFDFKGIIDYIFYSKPQLNTLGILGPLDHHWLVENNISGCP 532
Query: 582 SPEWSSDHIALLAE 595
P SDH +L A+
Sbjct: 533 HPLIPSDHFSLFAQ 546
Score = 52 (23.4 bits), Expect = 1.4e-42, Sum P(2) = 1.4e-42
Identities = 17/61 (27%), Positives = 30/61 (49%)
Query: 223 PSPRRLFPVNGSDMNMMG---H---IDSDGRISSTGTFSVLSYNILSDVYATSESYSYCP 276
P PRR++ + S+ G H ++ G++ S + S+ S L+ +Y + S S P
Sbjct: 16 PDPRRMYTIMSSEEAANGKKSHWAELEISGKVRSLSS-SLWSLTHLTALYLSDNSLSRIP 74
Query: 277 S 277
S
Sbjct: 75 S 75
>UNIPROTKB|Q96LI5 [details] [associations]
symbol:CNOT6L "CCR4-NOT transcription complex subunit
6-like" species:9606 "Homo sapiens" [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0061157 "mRNA destabilization"
evidence=IEA] [GO:0030014 "CCR4-NOT complex" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0004535 "poly(A)-specific ribonuclease activity" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR001611
PROSITE:PS51450 Pfam:PF03372 GO:GO:0005829 GO:GO:0046872
GO:GO:0008284 eggNOG:COG4886 InterPro:IPR005135 SUPFAM:SSF56219
GO:GO:0004535 GO:GO:0000289 KO:K12603 HOGENOM:HOG000294222
CTD:246175 HOVERGEN:HBG052641 EMBL:AK058188 EMBL:AC104701
EMBL:AL133112 IPI:IPI00164061 IPI:IPI00878418 PIR:T42705
RefSeq:NP_653172.2 UniGene:Hs.592519 PDB:3NGN PDB:3NGO PDB:3NGQ
PDBsum:3NGN PDBsum:3NGO PDBsum:3NGQ ProteinModelPortal:Q96LI5
SMR:Q96LI5 DIP:DIP-46837N IntAct:Q96LI5 STRING:Q96LI5
PhosphoSite:Q96LI5 DMDM:166216089 PRIDE:Q96LI5 DNASU:246175
Ensembl:ENST00000264903 Ensembl:ENST00000504123 GeneID:246175
KEGG:hsa:246175 UCSC:uc003hks.3 UCSC:uc003hkt.1
GeneCards:GC04M078634 HGNC:HGNC:18042 HPA:HPA042688
neXtProt:NX_Q96LI5 PharmGKB:PA38480 InParanoid:Q96LI5
EvolutionaryTrace:Q96LI5 GenomeRNAi:246175 NextBio:91870
ArrayExpress:Q96LI5 Bgee:Q96LI5 CleanEx:HS_CNOT6L
Genevestigator:Q96LI5 GO:GO:0061157 Uniprot:Q96LI5
Length = 555
Score = 427 (155.4 bits), Expect = 1.8e-42, Sum P(2) = 1.8e-42
Identities = 124/375 (33%), Positives = 186/375 (49%)
Query: 247 RISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEV 306
+I + +F+V+ YN+L D YAT + Y YCPSWAL+W YR++ ++ EI+ ADI+ LQEV
Sbjct: 182 QILPSASFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEIVNCDADIISLQEV 241
Query: 307 QNDHFEEFFAPELDKHGYQALYKRKTN-EVYNGNPHT-IDGCATFFRRDRFSHVKKYEVE 364
+ + + F P L + GY + K+ ++ + +DGCA FF+ ++F+ V+K+ VE
Sbjct: 242 ETEQYFTLFLPALKERGYDGFFSPKSRAKIMSEQERKHVDGCAIFFKTEKFTLVQKHTVE 301
Query: 365 FNKAAQSLTDAILPSAQKKNALNRLV-KDNVALIVVLEAKFSNQGADT-P---GKRQLLC 419
FN+ A + +D + LNR++ KDN+ + VVLE GA P +QLL
Sbjct: 302 FNQVAMANSDG------SEAMLNRVMTKDNIGVAVVLEVHKELFGAGMKPIHAADKQLLI 355
Query: 420 VANTHVNVHQELKDVKLWQ----VHTLLKGLEKIAA-----SAD---IPMLVCGDFNSVP 467
VAN H++ E DVKL Q V + LEK ++ +AD IP+++C D NS+P
Sbjct: 356 VANAHMHWDPEYSDVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCADLNSLP 415
Query: 468 GSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQR 527
S L+ G V H D LR + L + SS RI G ++
Sbjct: 416 DSGVVEYLSNGGVADNHKDFKE-----LRYNECLMNFSCNGKNGSSEGRITHGFQLKSAY 470
Query: 528 RRMDPTTNEPLFTHCTRDFIGTLDYIFYTAXXXXXXXXXXXXXXXXXRKD--TALPSPEW 585
N +T+ T DF G +DYIFY+ ++ T P P
Sbjct: 471 EN-----NLMPYTNYTFDFKGVIDYIFYSKTHMNVLGVLGPLDPQWLVENNITGCPHPHI 525
Query: 586 SSDHIALLAEFRCKP 600
SDH +LL + P
Sbjct: 526 PSDHFSLLTQLELHP 540
Score = 39 (18.8 bits), Expect = 1.8e-42, Sum P(2) = 1.8e-42
Identities = 15/60 (25%), Positives = 27/60 (45%)
Query: 223 PSPRRLFPVNGSDMNMMG---H---IDSDGRISSTGTFSVLSYNILSDVYATSESYSYCP 276
P PRR++ + ++ G H ++ GR+ S T S+ S L+ ++ S P
Sbjct: 14 PDPRRIYTIMSAEEVANGKKSHWAELEISGRVRSLST-SLWSLTHLTALHLNDNYLSRIP 72
>WB|WBGene00000376 [details] [associations]
symbol:ccr-4 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040002 "collagen and cuticulin-based cuticle
development" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0008340 "determination of adult lifespan" evidence=IMP]
Pfam:PF03372 GO:GO:0008340 GO:GO:0009792 GO:GO:0040011
GO:GO:0040018 GO:GO:0000003 eggNOG:COG5239
GeneTree:ENSGT00550000074364 InterPro:IPR005135 SUPFAM:SSF56219
GO:GO:0040002 KO:K12603 EMBL:Z68753 RefSeq:NP_001129877.1
UniGene:Cel.6023 ProteinModelPortal:B3GWC3 SMR:B3GWC3 STRING:B3GWC3
PaxDb:B3GWC3 EnsemblMetazoa:ZC518.3d GeneID:178184
KEGG:cel:CELE_ZC518.3 CTD:178184 WormBase:ZC518.3d
InParanoid:B3GWC3 NextBio:900070 ArrayExpress:B3GWC3 Uniprot:B3GWC3
Length = 677
Score = 435 (158.2 bits), Expect = 1.5e-40, P = 1.5e-40
Identities = 124/388 (31%), Positives = 188/388 (48%)
Query: 238 MMGHIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYR 297
M+ H D + I+ TF+VL YN+L D YAT YSYCPSWAL+W YR+ +++EI Y
Sbjct: 278 MIRHADPERPIA---TFTVLCYNVLCDKYATVNQYSYCPSWALNWEYRKGLIIKEIRTYE 334
Query: 298 ADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEVYNGNPHT--IDGCATFFRRDRF 355
AD++ LQEV+ + F F PEL + GY +++ K+ G +DGCA F++ D+F
Sbjct: 335 ADVITLQEVETEQFRTLFQPELKQLGYAGIFEAKSRAKTMGEEERKYVDGCAIFWKVDKF 394
Query: 356 SHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLV-KDNVALIVVLEAKFSNQGADTPGK 414
K+Y EF+ A ++ +N LNR++ +DN+ L VL+ K S G+
Sbjct: 395 DMDKQYLFEFSSVAMK------KASTSENMLNRVMPRDNIGLCAVLKIKESVYANKFLGR 448
Query: 415 RQL----------LCVANTHVNVHQELKDVKLWQ----VHTLLKGLEKIA-----ASADI 455
Q+ L VA H++ E DVKL Q H + + LE+++ +
Sbjct: 449 MQIPMNDNVVGNPLVVATAHIHWDPEFCDVKLVQSMMLTHEVSRVLEEVSKKYQITQQQV 508
Query: 456 PMLVCGDFNSVPGSAPHALLAMGKVEPVHPDL-AVDPLTILRPHTKLTHQLPLVSAYSSF 514
P+L+CGDFNS+P S L+ G++ H DL + + L T T + + S
Sbjct: 509 PVLICGDFNSLPDSGVFEYLSKGQITRRHMDLKSFRDDSCLEKFTNSTDK----NVISHP 564
Query: 515 ARIGVGLGMEHQRRRMDPTTNEPLFTHCTRDFIGTLDYIFYTAXXXXXXXXXXXXXXXXX 574
R+ + N FT+ T DF G +DYIF T
Sbjct: 565 LRLDSACDI-----------NSIPFTNYTLDFKGMIDYIFATPQSLARLGILGPFDPQWV 613
Query: 575 RKDTAL--PSPEWSSDHIALLAEFRCKP 600
+ + L P P +SDHI ++A++ P
Sbjct: 614 QSNKILGFPHPHVASDHIPIMAQYAIIP 641
>UNIPROTKB|E1BE73 [details] [associations]
symbol:LOC100849029 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0061157 "mRNA destabilization" evidence=IEA]
[GO:0008284 "positive regulation of cell proliferation"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0004535
"poly(A)-specific ribonuclease activity" evidence=IEA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IEA] Pfam:PF03372
GO:GO:0005737 GO:GO:0008284 GeneTree:ENSGT00550000074364
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0000288 GO:GO:0004535
OMA:YMLDNLA GO:GO:0061157 EMBL:DAAA02018160 IPI:IPI00694976
Ensembl:ENSBTAT00000005694 Uniprot:E1BE73
Length = 422
Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
Identities = 124/375 (33%), Positives = 186/375 (49%)
Query: 247 RISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEV 306
+I + +F+V+ YN+L D YAT + Y YCPSWAL+W YR++ ++ EI+ ADI+ LQEV
Sbjct: 49 QILPSASFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEIVNCDADIISLQEV 108
Query: 307 QNDHFEEFFAPELDKHGYQALYKRKTN-EVYNGNPHT-IDGCATFFRRDRFSHVKKYEVE 364
+ + + F P L + GY + K+ ++ + +DGCA FF+ ++F+ V+K+ VE
Sbjct: 109 ETEQYFTLFLPALKERGYDGFFSPKSRAKIMSEQERKHVDGCAIFFKTEKFTLVQKHTVE 168
Query: 365 FNKAAQSLTDAILPSAQKKNALNRLV-KDNVALIVVLEAKFSNQGADT-P---GKRQLLC 419
FN+ A + +D + LNR++ KDN+ + VVLE GA P +QLL
Sbjct: 169 FNQVAMANSDG------SEAMLNRVMTKDNIGVAVVLEVHKELFGAGMKPIHAADKQLLI 222
Query: 420 VANTHVNVHQELKDVKLWQ----VHTLLKGLEKIAA-----SAD---IPMLVCGDFNSVP 467
VAN H++ E DVKL Q V + LEK ++ +AD IP+++C D NS+P
Sbjct: 223 VANAHMHWDPEYSDVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCADLNSLP 282
Query: 468 GSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQR 527
S L+ G V H D LR + L + SS RI G ++
Sbjct: 283 DSGVVEYLSNGGVADNHKDFKE-----LRYNECLMNFSCNGKNGSSEGRITHGFQLKSAY 337
Query: 528 RRMDPTTNEPLFTHCTRDFIGTLDYIFYTAXXXXXXXXXXXXXXXXXRKD--TALPSPEW 585
N +T+ T DF G +DYIFY+ ++ T P P
Sbjct: 338 EN-----NLMPYTNYTFDFKGVIDYIFYSKTHMNVLGVLGPLDPQWLVENNITGCPHPHI 392
Query: 586 SSDHIALLAEFRCKP 600
SDH +LL + P
Sbjct: 393 PSDHFSLLTQLELHP 407
>MGI|MGI:2443154 [details] [associations]
symbol:Cnot6l "CCR4-NOT transcription complex, subunit
6-like" species:10090 "Mus musculus" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IMP] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0004535 "poly(A)-specific ribonuclease activity"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0030014 "CCR4-NOT complex" evidence=ISO]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0061157 "mRNA
destabilization" evidence=IMP] InterPro:IPR001611 PROSITE:PS51450
Pfam:PF03372 MGI:MGI:2443154 GO:GO:0005737 GO:GO:0046872
GO:GO:0008284 GO:GO:0006397 eggNOG:COG4886
GeneTree:ENSGT00550000074364 InterPro:IPR005135 SUPFAM:SSF56219
GO:GO:0000288 GO:GO:0004535 KO:K12603 HOGENOM:HOG000294222
CTD:246175 HOVERGEN:HBG052641 OMA:YMLDNLA GO:GO:0061157
EMBL:AK030112 EMBL:AK151728 EMBL:AC129600 EMBL:AC149285
EMBL:BC018506 IPI:IPI00124574 IPI:IPI00828817 IPI:IPI00881655
RefSeq:NP_659159.1 RefSeq:NP_849185.2 UniGene:Mm.28374
UniGene:Mm.384746 HSSP:P24014 ProteinModelPortal:Q8VEG6 SMR:Q8VEG6
DIP:DIP-46842N IntAct:Q8VEG6 STRING:Q8VEG6 PhosphoSite:Q8VEG6
PRIDE:Q8VEG6 Ensembl:ENSMUST00000113005 Ensembl:ENSMUST00000122003
Ensembl:ENSMUST00000155901 GeneID:231464 KEGG:mmu:231464
UCSC:uc008yfd.1 UCSC:uc008yfe.1 UCSC:uc008yfg.1 InParanoid:Q8VEG6
NextBio:380566 Bgee:Q8VEG6 CleanEx:MM_CNOT6L Genevestigator:Q8VEG6
Uniprot:Q8VEG6
Length = 555
Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
Identities = 123/375 (32%), Positives = 185/375 (49%)
Query: 247 RISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEV 306
+I + +F+V+ YN+L D YAT + Y YCPSWAL+W YR++ ++ EI+ + ADI+ LQEV
Sbjct: 182 QILPSASFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEIVNWDADIISLQEV 241
Query: 307 QNDHFEEFFAPELDKHGYQALYKRKTN-EVYNGNPHT-IDGCATFFRRDRFSHVKKYEVE 364
+ + + F P L GY + K+ ++ + +DGCA FF+ ++F+ V+K+ VE
Sbjct: 242 ETEQYFTLFLPALKDRGYDGFFSPKSRAKIMSEQERKHVDGCAIFFKTEKFTLVQKHTVE 301
Query: 365 FNKAAQSLTDAILPSAQKKNALNRLV-KDNVALIVVLEAKFSNQGADT-P---GKRQLLC 419
FN+ A + +D + LNR++ KDN+ + VVLE G P +QLL
Sbjct: 302 FNQVAMANSDG------SEAMLNRVMTKDNIGVAVVLEVHKELFGTGMKPIHAADKQLLI 355
Query: 420 VANTHVNVHQELKDVKLWQ----VHTLLKGLEKIAA-----SAD---IPMLVCGDFNSVP 467
VAN H++ E DVKL Q V + LEK ++ +AD IP+++C D NS+P
Sbjct: 356 VANAHMHWDPEYSDVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCADLNSLP 415
Query: 468 GSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQR 527
S L+ G V H D LR + L + SS RI G ++
Sbjct: 416 DSGVVEYLSNGGVADNHKDFKE-----LRYNECLMNFSCSGKNGSSEGRITHGFQLKSAY 470
Query: 528 RRMDPTTNEPLFTHCTRDFIGTLDYIFYTAXXXXXXXXXXXXXXXXXRKD--TALPSPEW 585
N +T+ T DF G +DYIFY+ ++ T P P
Sbjct: 471 EN-----NLMPYTNYTFDFKGVIDYIFYSKTHMNVLGVLGPLDPQWLVENNITGCPHPHI 525
Query: 586 SSDHIALLAEFRCKP 600
SDH +LL + P
Sbjct: 526 PSDHFSLLTQLELHP 540
>RGD|1309128 [details] [associations]
symbol:Cnot6l "CCR4-NOT transcription complex, subunit 6-like"
species:10116 "Rattus norvegicus" [GO:0000288 "nuclear-transcribed
mRNA catabolic process, deadenylation-dependent decay"
evidence=IEA;ISO] [GO:0004535 "poly(A)-specific ribonuclease
activity" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA;ISO] [GO:0030014 "CCR4-NOT complex"
evidence=ISO] [GO:0061157 "mRNA destabilization" evidence=IEA;ISO]
InterPro:IPR001611 PROSITE:PS51450 Pfam:PF03372 RGD:1309128
GO:GO:0005737 GO:GO:0008284 GeneTree:ENSGT00550000074364
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0000288 GO:GO:0004535
GO:GO:0061157 IPI:IPI00363898 Ensembl:ENSRNOT00000002843
Uniprot:F1M642
Length = 553
Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
Identities = 123/375 (32%), Positives = 185/375 (49%)
Query: 247 RISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEV 306
+I + +F+V+ YN+L D YAT + Y YCPSWAL+W YR++ ++ EI+ + ADI+ LQEV
Sbjct: 180 QILPSASFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEIVNWDADIISLQEV 239
Query: 307 QNDHFEEFFAPELDKHGYQALYKRKTN-EVYNGNPHT-IDGCATFFRRDRFSHVKKYEVE 364
+ + + F P L GY + K+ ++ + +DGCA FF+ ++F+ V+K+ VE
Sbjct: 240 ETEQYFTLFLPALKDRGYDGFFSPKSRAKIMSEQERKHVDGCAIFFKTEKFTLVQKHTVE 299
Query: 365 FNKAAQSLTDAILPSAQKKNALNRLV-KDNVALIVVLEAKFSNQGADT-P---GKRQLLC 419
FN+ A + +D + LNR++ KDN+ + VVLE G P +QLL
Sbjct: 300 FNQVAMANSDG------SEAMLNRVMTKDNIGVAVVLEVHKELFGTGMKPIHAADKQLLI 353
Query: 420 VANTHVNVHQELKDVKLWQ----VHTLLKGLEKIAA-----SAD---IPMLVCGDFNSVP 467
VAN H++ E DVKL Q V + LEK ++ +AD IP+++C D NS+P
Sbjct: 354 VANAHMHWDPEYSDVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCADLNSLP 413
Query: 468 GSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQR 527
S L+ G V H D LR + L + SS RI G ++
Sbjct: 414 DSGVVEYLSNGGVADNHKDFKE-----LRYNECLMNFSCSGKNGSSEGRITHGFQLKSAY 468
Query: 528 RRMDPTTNEPLFTHCTRDFIGTLDYIFYTAXXXXXXXXXXXXXXXXXRKD--TALPSPEW 585
N +T+ T DF G +DYIFY+ ++ T P P
Sbjct: 469 EN-----NLMPYTNYTFDFKGVIDYIFYSKTHMNVLGVLGPLDPQWLVENNITGCPHPHI 523
Query: 586 SSDHIALLAEFRCKP 600
SDH +LL + P
Sbjct: 524 PSDHFSLLTQLELHP 538
>UNIPROTKB|Q9ULM6 [details] [associations]
symbol:CNOT6 "CCR4-NOT transcription complex subunit 6"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:2000327 "positive regulation of ligand-dependent
nuclear receptor transcription coactivator activity" evidence=IDA]
[GO:0035195 "gene silencing by miRNA" evidence=TAS] [GO:0043928
"exonucleolytic nuclear-transcribed mRNA catabolic process involved
in deadenylation-dependent decay" evidence=IDA] [GO:0030014
"CCR4-NOT complex" evidence=IDA] [GO:0000288 "nuclear-transcribed
mRNA catabolic process, deadenylation-dependent decay"
evidence=TAS] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=TAS] [GO:0004535 "poly(A)-specific
ribonuclease activity" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR001611 PROSITE:PS51450
Pfam:PF03372 GO:GO:0005829 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 eggNOG:COG4886 InterPro:IPR003591 SMART:SM00369
GO:GO:0006351 GO:GO:0003723 InterPro:IPR005135 SUPFAM:SSF56219
EMBL:CH471165 GO:GO:0004535 GO:GO:0000289 KO:K12603 OMA:YATSDTY
HOGENOM:HOG000294222 CleanEx:HS_CCR4 HOVERGEN:HBG052641
OrthoDB:EOG43TZV7 EMBL:AB033020 EMBL:BC152469 IPI:IPI00008205
RefSeq:NP_056270.2 UniGene:Hs.608380 ProteinModelPortal:Q9ULM6
SMR:Q9ULM6 DIP:DIP-46838N IntAct:Q9ULM6 STRING:Q9ULM6
PhosphoSite:Q9ULM6 DMDM:46396033 PRIDE:Q9ULM6 DNASU:57472
Ensembl:ENST00000261951 Ensembl:ENST00000393356 GeneID:57472
KEGG:hsa:57472 UCSC:uc003mlx.3 CTD:57472 GeneCards:GC05P179921
HGNC:HGNC:14099 HPA:HPA044568 MIM:608951 neXtProt:NX_Q9ULM6
PharmGKB:PA26677 InParanoid:Q9ULM6 PhylomeDB:Q9ULM6
GenomeRNAi:57472 NextBio:63703 ArrayExpress:Q9ULM6 Bgee:Q9ULM6
CleanEx:HS_CNOT6 Genevestigator:Q9ULM6 GermOnline:ENSG00000113300
GO:GO:2000327 Uniprot:Q9ULM6
Length = 557
Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
Identities = 120/376 (31%), Positives = 183/376 (48%)
Query: 247 RISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEV 306
R T FSV+ YN+L D YAT + Y YCPSWAL+W YR++ +++EI+ ADIV LQEV
Sbjct: 182 RTRPTALFSVMCYNVLCDKYATRQLYGYCPSWALNWDYRKKAIIQEILSCNADIVSLQEV 241
Query: 307 QNDHFEEFFAPELDKHGYQALY--KRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVE 364
+ + + FF EL + GY + K + + +DGCA FF+ ++F+ V+K+ VE
Sbjct: 242 ETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTVE 301
Query: 365 FNKAAQSLTDAILPSAQKKNALNRLV-KDNVALIVVLEAKFSNQGADTP-GK------RQ 416
FN+ A + ++ + LNR++ KDN+ + V+LE + + + P GK +Q
Sbjct: 302 FNQLAMANSEG------SEAMLNRVMTKDNIGVAVLLELR--KESIEMPSGKPHLGTEKQ 353
Query: 417 LLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASAD-------------IPMLVCGDF 463
L+ VAN H++ E DVKL Q L ++ I A IP+++C D
Sbjct: 354 LILVANAHMHWDPEYSDVKLVQTMMFLSEVKNIIDKASRNLKSSVLGEFGTIPLVLCADL 413
Query: 464 NSVPGSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGM 523
NS+P S L+ G VE H D LR + LT+ +S + G G
Sbjct: 414 NSLPDSGVVEYLSTGGVETNHKDFKE-----LRYNESLTN-------FSCHGKNGTTNGR 461
Query: 524 EHQRRRMDPTTNEPL--FTHCTRDFIGTLDYIFYTAXXXXXXXXXXXXXXXXXRKD--TA 579
++ L +T+ T DF G +DYIFY+ ++ +
Sbjct: 462 ITHGFKLQSAYESGLMPYTNYTFDFKGIIDYIFYSKPQLNTLGILGPLDHHWLVENNISG 521
Query: 580 LPSPEWSSDHIALLAE 595
P P SDH +L A+
Sbjct: 522 CPHPLIPSDHFSLFAQ 537
>UNIPROTKB|Q5BJ41 [details] [associations]
symbol:cnot6 "CCR4-NOT transcription complex subunit 6"
species:8355 "Xenopus laevis" [GO:2000327 "positive regulation of
ligand-dependent nuclear receptor transcription coactivator
activity" evidence=ISS] InterPro:IPR001611 PROSITE:PS51450
Pfam:PF03372 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0046872 InterPro:IPR003591 SMART:SM00369 GO:GO:0006351
GO:GO:0003723 GO:GO:0004527 GO:GO:0090305 InterPro:IPR005135
SUPFAM:SSF56219 KO:K12603 HOVERGEN:HBG052641 CTD:57472
GO:GO:2000327 EMBL:BC091632 RefSeq:NP_001184194.1 UniGene:Xl.52932
ProteinModelPortal:Q5BJ41 GeneID:100505426 KEGG:xla:100505426
Uniprot:Q5BJ41
Length = 552
Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
Identities = 119/374 (31%), Positives = 185/374 (49%)
Query: 247 RISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEV 306
R T FSV+ YN+L D YAT + Y YCPSWAL+W YR++ +++EI+ ADI+ LQEV
Sbjct: 177 RTRPTALFSVMCYNVLCDKYATRQLYGYCPSWALNWDYRKKAIIQEILSCNADIISLQEV 236
Query: 307 QNDHFEEFFAPELDKHGYQALY--KRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVE 364
+ + + FF EL + GY + K + + +DGCA FF+ ++F+ V+K+ VE
Sbjct: 237 ETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTVE 296
Query: 365 FNKAAQSLTDAILPSAQKKNALNRLV-KDNVALIVVLEAKFS----NQGADTPG-KRQLL 418
FN+ A + ++ + LNR++ KDN+ + V+LE + + G G ++QL+
Sbjct: 297 FNQLAMANSEG------SEAMLNRVMTKDNIGVAVLLELRKELIEMSSGKPHLGTEKQLI 350
Query: 419 CVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASAD-------------IPMLVCGDFNS 465
VAN H++ E DVKL Q L ++ I A IP+++C D NS
Sbjct: 351 LVANAHMHWDPEYSDVKLVQTMMFLSEVKNIIDKASRSLKSSVLGECGTIPLVLCADLNS 410
Query: 466 VPGSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLG-ME 524
+P S L+ G VE H D LR + LT+ +S + G+ G +
Sbjct: 411 LPDSGVVEYLSTGGVETNHKDFKE-----LRYNESLTN-------FSCNGKNGMTNGRIT 458
Query: 525 HQRRRMDPTTNEPL-FTHCTRDFIGTLDYIFYTAXXXXXXXXXXXXXXXXXRKD--TALP 581
H + N + +T+ T DF G +DYIFY+ ++ + P
Sbjct: 459 HGFKLKSAYENGLMPYTNYTFDFKGIIDYIFYSKPQLNTLAILGPLDHHWLVENNISGCP 518
Query: 582 SPEWSSDHIALLAE 595
P SDH +L A+
Sbjct: 519 HPLIPSDHFSLFAQ 532
>MGI|MGI:2144529 [details] [associations]
symbol:Cnot6 "CCR4-NOT transcription complex, subunit 6"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0030014 "CCR4-NOT complex"
evidence=ISO] [GO:0043928 "exonucleolytic nuclear-transcribed mRNA
catabolic process involved in deadenylation-dependent decay"
evidence=ISO] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:2000327 "positive regulation of ligand-dependent nuclear
receptor transcription coactivator activity" evidence=ISO]
InterPro:IPR001611 PROSITE:PS51450 Pfam:PF03372 MGI:MGI:2144529
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0046872
eggNOG:COG4886 InterPro:IPR003591 SMART:SM00369 GO:GO:0006351
GO:GO:0003723 GO:GO:0004527 GO:GO:0090305
GeneTree:ENSGT00550000074364 InterPro:IPR005135 SUPFAM:SSF56219
KO:K12603 OMA:YATSDTY HOGENOM:HOG000294222 CleanEx:MM_CCR4
HOVERGEN:HBG052641 OrthoDB:EOG43TZV7 CTD:57472 GO:GO:2000327
EMBL:AY043269 EMBL:AK129307 EMBL:AL606479 EMBL:BC049984
EMBL:BC057190 EMBL:BC062950 IPI:IPI00322541 IPI:IPI00410965
IPI:IPI00410966 RefSeq:NP_997649.1 UniGene:Mm.247113
UniGene:Mm.431753 ProteinModelPortal:Q8K3P5 SMR:Q8K3P5
STRING:Q8K3P5 PhosphoSite:Q8K3P5 PRIDE:Q8K3P5 DNASU:104625
Ensembl:ENSMUST00000020624 Ensembl:ENSMUST00000145353 GeneID:104625
KEGG:mmu:104625 UCSC:uc007iqy.1 UCSC:uc007iqz.1 UCSC:uc007ira.1
InParanoid:Q8K3P5 NextBio:357192 Bgee:Q8K3P5 CleanEx:MM_CNOT6
Genevestigator:Q8K3P5 GermOnline:ENSMUSG00000020362 Uniprot:Q8K3P5
Length = 557
Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
Identities = 119/374 (31%), Positives = 185/374 (49%)
Query: 247 RISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEV 306
R T FSV+ YN+L D YAT + Y YCPSWAL+W YR++ +++EI+ ADI+ LQEV
Sbjct: 182 RTRPTALFSVMCYNVLCDKYATRQLYGYCPSWALNWDYRKKAIIQEILSCNADIISLQEV 241
Query: 307 QNDHFEEFFAPELDKHGYQALY--KRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVE 364
+ + + FF EL + GY + K + + +DGCA FF+ ++F+ V+K+ VE
Sbjct: 242 ETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTVE 301
Query: 365 FNKAAQSLTDAILPSAQKKNALNRLV-KDNVALIVVLEAKFS----NQGADTPG-KRQLL 418
FN+ A + ++ + LNR++ KDN+ + V+LE + + G G ++QL+
Sbjct: 302 FNQLAMANSEG------SEAMLNRVMTKDNIGVAVLLELRKELIEMSSGKPHLGTEKQLI 355
Query: 419 CVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASAD-------------IPMLVCGDFNS 465
VAN H++ E DVKL Q L ++ I A IP+++C D NS
Sbjct: 356 LVANAHMHWDPEYSDVKLVQTMMFLSEVKNIIDKASRSLKSSVLGECGTIPLVLCADLNS 415
Query: 466 VPGSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLG-ME 524
+P S L+ G VE H D LR + LT+ +S + G+ G +
Sbjct: 416 LPDSGVVEYLSTGGVETNHKDFKE-----LRYNESLTN-------FSCNGKNGMTNGRIT 463
Query: 525 HQRRRMDPTTNEPL-FTHCTRDFIGTLDYIFYTAXXXXXXXXXXXXXXXXXRKD--TALP 581
H + N + +T+ T DF G +DYIFY+ ++ + P
Sbjct: 464 HGFKLKSAYENGLMPYTNYTFDFKGIIDYIFYSKPQLNTLAILGPLDHHWLVENNISGCP 523
Query: 582 SPEWSSDHIALLAE 595
P SDH +L A+
Sbjct: 524 HPLIPSDHFSLFAQ 537
>RGD|1310783 [details] [associations]
symbol:Cnot6 "CCR4-NOT transcription complex, subunit 6"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0030014 "CCR4-NOT complex"
evidence=ISO] [GO:0043928 "exonucleolytic nuclear-transcribed mRNA
catabolic process involved in deadenylation-dependent decay"
evidence=ISO] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:2000327 "positive regulation of ligand-dependent nuclear
receptor transcription coactivator activity" evidence=ISO;ISS]
InterPro:IPR001611 PROSITE:PS51450 Pfam:PF03372 RGD:1310783
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0046872
eggNOG:COG4886 InterPro:IPR003591 SMART:SM00369 GO:GO:0006351
GO:GO:0003723 GO:GO:0004527 GO:GO:0090305 InterPro:IPR005135
SUPFAM:SSF56219 KO:K12603 HOGENOM:HOG000294222 HOVERGEN:HBG052641
OrthoDB:EOG43TZV7 CTD:57472 GO:GO:2000327 EMBL:BC079308
IPI:IPI00464576 RefSeq:NP_001013878.1 UniGene:Rn.93562
ProteinModelPortal:Q6AXU9 SMR:Q6AXU9 STRING:Q6AXU9
PhosphoSite:Q6AXU9 PRIDE:Q6AXU9 GeneID:287249 KEGG:rno:287249
UCSC:RGD:1310783 NextBio:625750 ArrayExpress:Q6AXU9
Genevestigator:Q6AXU9 GermOnline:ENSRNOG00000002803 Uniprot:Q6AXU9
Length = 557
Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
Identities = 119/374 (31%), Positives = 185/374 (49%)
Query: 247 RISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEV 306
R T FSV+ YN+L D YAT + Y YCPSWAL+W YR++ +++EI+ ADI+ LQEV
Sbjct: 182 RTRPTALFSVMCYNVLCDKYATRQLYGYCPSWALNWDYRKKAIIQEILSCNADIISLQEV 241
Query: 307 QNDHFEEFFAPELDKHGYQALY--KRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVE 364
+ + + FF EL + GY + K + + +DGCA FF+ ++F+ V+K+ VE
Sbjct: 242 ETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTVE 301
Query: 365 FNKAAQSLTDAILPSAQKKNALNRLV-KDNVALIVVLEAKFS----NQGADTPG-KRQLL 418
FN+ A + ++ + LNR++ KDN+ + V+LE + + G G ++QL+
Sbjct: 302 FNQLAMANSEG------SEAMLNRVMTKDNIGVAVLLELRKELIEMSSGKPHLGTEKQLI 355
Query: 419 CVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASAD-------------IPMLVCGDFNS 465
VAN H++ E DVKL Q L ++ I A IP+++C D NS
Sbjct: 356 LVANAHMHWDPEYSDVKLVQTMMFLSEVKNIIDKASRSLKSSVLGECGTIPLVLCADLNS 415
Query: 466 VPGSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLG-ME 524
+P S L+ G VE H D LR + LT+ +S + G+ G +
Sbjct: 416 LPDSGVVEYLSTGGVETNHKDFKE-----LRYNESLTN-------FSCNGKNGMTNGRIT 463
Query: 525 HQRRRMDPTTNEPL-FTHCTRDFIGTLDYIFYTAXXXXXXXXXXXXXXXXXRKD--TALP 581
H + N + +T+ T DF G +DYIFY+ ++ + P
Sbjct: 464 HGFKLKSAYENGLMPYTNYTFDFKGIIDYIFYSKPQLNTLAILGPLDHHWLVENNISGCP 523
Query: 582 SPEWSSDHIALLAE 595
P SDH +L A+
Sbjct: 524 HPLIPSDHFSLFAQ 537
>POMBASE|SPCC31H12.08c [details] [associations]
symbol:ccr4 "CCR4-Not complex subunit Ccr4
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004535
"poly(A)-specific ribonuclease activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006354 "DNA-dependent transcription, elongation" evidence=IC]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0030015 "CCR4-NOT core complex" evidence=ISO]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISO] InterPro:IPR001611
PROSITE:PS51450 PomBase:SPCC31H12.08c Pfam:PF03372 GO:GO:0005829
GO:GO:0005634 GO:GO:0006355 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0046872 eggNOG:COG4886 GO:GO:0003723 GO:GO:0090305
InterPro:IPR025875 Pfam:PF12799 InterPro:IPR005135 SUPFAM:SSF56219
GO:GO:0004535 GO:GO:0000289 GO:GO:0030015 KO:K12603
HOGENOM:HOG000294222 OMA:CLQEIDQ OrthoDB:EOG4Z39P3 PIR:T41296
RefSeq:NP_587901.1 ProteinModelPortal:O74874 STRING:O74874
EnsemblFungi:SPCC31H12.08c.1 GeneID:2538913 KEGG:spo:SPCC31H12.08c
NextBio:20800091 GO:GO:0006354 Uniprot:O74874
Length = 690
Score = 423 (154.0 bits), Expect = 3.8e-39, P = 3.8e-39
Identities = 117/372 (31%), Positives = 183/372 (49%)
Query: 254 FSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEE 313
F+++SYN+L + YATS Y Y PSWALSW+YR+ +++E+ GY ADI+CLQEV ++++
Sbjct: 336 FTIMSYNVLCERYATSTLYGYTPSWALSWSYRKDLIMQELGGYNADIICLQEVDVENYDT 395
Query: 314 FFAPELDKHGYQALY--KRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQS 371
FFAP++ GY+ ++ K + + +DGCATFF+ ++ +K +E+N+A
Sbjct: 396 FFAPQMSLKGYKGVHFPKSRVRTMNEVERRIVDGCATFFKTSKYVMHEKMVIEYNQAPSL 455
Query: 372 LTDAILPSAQKKNALNRLV-KDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQE 430
I ++ N NR++ KDN+++I +LE K N G R L VAN H++ +
Sbjct: 456 RRQDIKLTS---NMYNRVMTKDNISVITLLENK-EN------GSR--LIVANCHIHWDPQ 503
Query: 431 LKDVKLWQVHTLLKGLEKIAAS---------AD--------------IPMLVCGDFNSVP 467
+DVK+ QV L+ + ++A +D IP+L+CGDFNSV
Sbjct: 504 FRDVKVIQVAMLMDEIAQVATKFRNMPSKIPSDQLKDERPTYPEYLKIPILICGDFNSVQ 563
Query: 468 GSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQR 527
GS + L+ G + H D + + + +H L SAY +
Sbjct: 564 GSGVYDFLSSGSISQNHEDFMNNDYGEYTVNGR-SHAFNLKSAYGESEALS--------- 613
Query: 528 RRMDPTTNEPLFTHCTRDFIGTLDYIFYTAXXXXXXXXXXXXXXXXXRKDTALPSPEWSS 587
FT+ T F G +D+I+YT P+ + S
Sbjct: 614 -----------FTNYTPGFKGAIDHIWYTGNSLEVTGLLKGVDKDYLSGVVGFPNAHFPS 662
Query: 588 DHIALLAEFRCK 599
DHI LLAEF+ K
Sbjct: 663 DHICLLAEFKVK 674
>UNIPROTKB|A6QR51 [details] [associations]
symbol:CNOT6 "CNOT6 protein" species:9913 "Bos taurus"
[GO:2000327 "positive regulation of ligand-dependent nuclear
receptor transcription coactivator activity" evidence=IEA]
InterPro:IPR001611 PROSITE:PS51450 Pfam:PF03372 eggNOG:COG4886
InterPro:IPR003591 SMART:SM00369 GeneTree:ENSGT00550000074364
InterPro:IPR005135 SUPFAM:SSF56219 KO:K12603 OMA:YATSDTY
HOGENOM:HOG000294222 HOVERGEN:HBG052641 OrthoDB:EOG43TZV7 CTD:57472
EMBL:DAAA02018941 EMBL:DAAA02018942 EMBL:DAAA02018943 EMBL:BC150116
IPI:IPI00711873 RefSeq:NP_001094631.1 UniGene:Bt.37548
STRING:A6QR51 Ensembl:ENSBTAT00000023088 GeneID:534707
KEGG:bta:534707 InParanoid:A6QR51 NextBio:20876510 Uniprot:A6QR51
Length = 557
Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
Identities = 118/374 (31%), Positives = 182/374 (48%)
Query: 247 RISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEV 306
R T FSV+ YN+L D YAT + Y YCPSWAL+W YR++ +++EI+ ADI+ LQEV
Sbjct: 182 RTRPTALFSVMCYNVLCDKYATRQLYGYCPSWALNWDYRKKAIIQEILSCNADIISLQEV 241
Query: 307 QNDHFEEFFAPELDKHGYQALY--KRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVE 364
+ + + FF EL + GY + K + + +DGCA FF+ ++F+ V+K+ VE
Sbjct: 242 ETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTVE 301
Query: 365 FNKAAQSLTDAILPSAQKKNALNRLV-KDNVALIVVLEAKFS----NQGADTPG-KRQLL 418
FN+ A + ++ + LNR++ KDN+ + V+LE + + G G ++QL+
Sbjct: 302 FNQLAMANSEG------SEAMLNRVMTKDNIGVAVLLELRKELIEISSGKPHLGTEKQLI 355
Query: 419 CVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASAD-------------IPMLVCGDFNS 465
VAN H++ E DVKL Q L ++ I A IP+++C D NS
Sbjct: 356 LVANAHMHWDPEYSDVKLVQTMMFLSEVKNIIDKASRSLQSSVLGEFGTIPLVLCADLNS 415
Query: 466 VPGSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEH 525
+P S L+ G VE H D LR + LT+ +S + G G
Sbjct: 416 LPDSGVVEYLSTGGVETNHKDFKE-----LRYNESLTN-------FSCNGKNGTTNGRIT 463
Query: 526 QRRRMDPTTNEPL--FTHCTRDFIGTLDYIFYTAXXXXXXXXXXXXXXXXXRKD--TALP 581
++ L +T+ T DF G +DYIFY+ ++ + P
Sbjct: 464 HGFKLKSAYESGLMPYTNYTFDFKGIIDYIFYSKPQLNTLGILGPLDHHWLVENNISGCP 523
Query: 582 SPEWSSDHIALLAE 595
P SDH +L A+
Sbjct: 524 HPLIPSDHFSLFAQ 537
>UNIPROTKB|E2QS92 [details] [associations]
symbol:CNOT6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:2000327 "positive regulation of
ligand-dependent nuclear receptor transcription coactivator
activity" evidence=IEA] InterPro:IPR001611 PROSITE:PS51450
Pfam:PF03372 InterPro:IPR003591 SMART:SM00369
GeneTree:ENSGT00550000074364 InterPro:IPR005135 SUPFAM:SSF56219
EMBL:AAEX03007668 RefSeq:XP_538584.2 Ensembl:ENSCAFT00000000745
GeneID:481463 Uniprot:E2QS92
Length = 557
Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
Identities = 118/374 (31%), Positives = 182/374 (48%)
Query: 247 RISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEV 306
R T FSV+ YN+L D YAT + Y YCPSWAL+W YR++ +++EI+ ADI+ LQEV
Sbjct: 182 RTRPTALFSVMCYNVLCDKYATRQLYGYCPSWALNWDYRKKAIIQEILSCNADIISLQEV 241
Query: 307 QNDHFEEFFAPELDKHGYQALY--KRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVE 364
+ + + FF EL + GY + K + + +DGCA FF+ ++F+ V+K+ VE
Sbjct: 242 ETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTVE 301
Query: 365 FNKAAQSLTDAILPSAQKKNALNRLV-KDNVALIVVLEAKFS----NQGADTPG-KRQLL 418
FN+ A + ++ + LNR++ KDN+ + V+LE + + G G ++QL+
Sbjct: 302 FNQLAMANSEG------SEAMLNRVMTKDNIGVAVLLELRKELIEMSSGKPHLGTEKQLI 355
Query: 419 CVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASAD-------------IPMLVCGDFNS 465
VAN H++ E DVKL Q L ++ I A IP+++C D NS
Sbjct: 356 LVANAHMHWDPEYSDVKLVQTMMFLSEVKNIIDKASRNLQSSVLGEFGTIPLVLCADLNS 415
Query: 466 VPGSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEH 525
+P S L+ G VE H D LR + LT+ +S + G G
Sbjct: 416 LPDSGVVEYLSTGGVETNHKDFKE-----LRYNESLTN-------FSCNGKNGTTNGRIT 463
Query: 526 QRRRMDPTTNEPL--FTHCTRDFIGTLDYIFYTAXXXXXXXXXXXXXXXXXRKD--TALP 581
++ L +T+ T DF G +DYIFY+ ++ + P
Sbjct: 464 HGFKLKSAYESGLMPYTNYTFDFKGIIDYIFYSKPQLNTLGILGPLDHHWLVENNISGCP 523
Query: 582 SPEWSSDHIALLAE 595
P SDH +L A+
Sbjct: 524 HPLIPSDHFSLFAQ 537
>UNIPROTKB|E1C678 [details] [associations]
symbol:CNOT6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:2000327 "positive regulation of ligand-dependent
nuclear receptor transcription coactivator activity" evidence=IEA]
InterPro:IPR001611 PROSITE:PS51450 Pfam:PF03372 InterPro:IPR003591
SMART:SM00369 GeneTree:ENSGT00550000074364 InterPro:IPR005135
SUPFAM:SSF56219 KO:K12603 OMA:YATSDTY CTD:57472 EMBL:AADN02028573
EMBL:AADN02028574 EMBL:AADN02028575 IPI:IPI00583544
RefSeq:XP_414612.3 UniGene:Gga.56102 Ensembl:ENSGALT00000009699
GeneID:416293 KEGG:gga:416293 Uniprot:E1C678
Length = 557
Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
Identities = 118/374 (31%), Positives = 184/374 (49%)
Query: 247 RISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEV 306
R T FSV+ YN+L D YAT + Y YCPSWAL+W YR++ +++EI+ ADI+ LQEV
Sbjct: 182 RTRPTALFSVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKAIMQEILSCNADIISLQEV 241
Query: 307 QNDHFEEFFAPELDKHGYQALY--KRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVE 364
+ + + FF EL + GY + K + + +DGCA FF+ ++F+ V+K+ VE
Sbjct: 242 ETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTVE 301
Query: 365 FNKAAQSLTDAILPSAQKKNALNRLV-KDNVALIVVLEAKFS----NQGADTPG-KRQLL 418
FN+ A + ++ + LNR++ KDN+ + V+LE + + G G ++QL+
Sbjct: 302 FNQLAMANSEG------SEAMLNRVMTKDNIGVAVLLELRKELIEMSSGKPHLGMEKQLV 355
Query: 419 CVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASAD-------------IPMLVCGDFNS 465
VAN H++ + DVKL Q L ++ I A IP+++C D NS
Sbjct: 356 LVANAHMHWDPDYSDVKLVQTMMFLSEVKNIIDKASRSLKPGVAGELGTIPLVLCADLNS 415
Query: 466 VPGSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLG-ME 524
+P S L+ G VE H D LR + LT+ +S + G G +
Sbjct: 416 LPDSGVVEYLSTGGVETNHKDFKE-----LRYNESLTN-------FSCNGKNGTTNGRIT 463
Query: 525 HQRRRMDPTTNEPL-FTHCTRDFIGTLDYIFYTAXXXXXXXXXXXXXXXXXRKD--TALP 581
H + N + +T+ T DF G +DYIFY+ ++ + P
Sbjct: 464 HGFKLKSAYENGLMPYTNYTFDFKGIIDYIFYSKPQLNILGILGPLDHHWLIENNISGCP 523
Query: 582 SPEWSSDHIALLAE 595
P SDH +L A+
Sbjct: 524 HPLIPSDHFSLFAQ 537
>ZFIN|ZDB-GENE-071004-97 [details] [associations]
symbol:zgc:171797 "zgc:171797" species:7955 "Danio
rerio" [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001611
PROSITE:PS51450 Pfam:PF03372 ZFIN:ZDB-GENE-071004-97
InterPro:IPR025875 Pfam:PF12799 GeneTree:ENSGT00550000074364
InterPro:IPR005135 SUPFAM:SSF56219 OMA:ENVYANR EMBL:AL935334
IPI:IPI00495563 Ensembl:ENSDART00000030357 Bgee:F1QA17
Uniprot:F1QA17
Length = 558
Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
Identities = 117/374 (31%), Positives = 182/374 (48%)
Query: 247 RISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEV 306
R T +V+ YN+L D YAT + Y YCPSWAL+W+YR++++++EI+ ADI+ LQEV
Sbjct: 182 RSRPTALLTVMCYNVLCDKYATRQLYGYCPSWALNWSYRKKSIMQEILNCNADIISLQEV 241
Query: 307 QNDHFEEFFAPELDKHGYQALY--KRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVE 364
+ + + FF EL K GY + K + + + +DGCA F++ ++F+ V+K+ VE
Sbjct: 242 ETEQYFNFFLLELSKQGYDGFFSPKSRARTMSESDRKHVDGCAIFYKTEKFNVVQKHTVE 301
Query: 365 FNKAAQSLTDAILPSAQKKNALNRLV-KDNVALIVVLEAKFS----NQGADTPG-KRQLL 418
FN+ A + ++ + LNR++ KDN+ + V+LE K + G ++QLL
Sbjct: 302 FNQLAMANSEG------SEAMLNRVMTKDNIGVAVLLELKKELIEVSSGKSIHAMEKQLL 355
Query: 419 CVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASAD--------------IPMLVCGDFN 464
VAN H++ E DVKL Q L ++ I A IP+++C D N
Sbjct: 356 LVANAHMHWDPEYSDVKLVQTMMFLSEVKNIIDKASRSLKHSSVSGETSSIPLVLCADLN 415
Query: 465 SVPGSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGME 524
S+P S L+ G V+ H D LR LT+ +S RI
Sbjct: 416 SLPDSGVVEYLSTGGVDCTHKDFKE-----LRYSDSLTNFNCNGKNSTSNGRI------T 464
Query: 525 HQRRRMDPTTNEPL-FTHCTRDFIGTLDYIFYTAXXXXXXXXXXXXXXXXXRKD--TALP 581
H + N + +T+ T DF G +DYIFY+ ++ + P
Sbjct: 465 HAFKLKSAYENGLMPYTNYTFDFRGVIDYIFYSRPQLNVLGVLGPLDTNWLLENNISGCP 524
Query: 582 SPEWSSDHIALLAE 595
P SDH +L A+
Sbjct: 525 HPLIPSDHFSLFAQ 538
>SGD|S000000019 [details] [associations]
symbol:CCR4 "Component of the CCR4-NOT transcriptional
complex" species:4932 "Saccharomyces cerevisiae" [GO:0030015
"CCR4-NOT core complex" evidence=IPI] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IDA;IPI] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0000289 "nuclear-transcribed mRNA poly(A)
tail shortening" evidence=IMP;IDA] [GO:0000288 "nuclear-transcribed
mRNA catabolic process, deadenylation-dependent decay"
evidence=IGI;IMP;IDA] [GO:0007089 "traversing start control point
of mitotic cell cycle" evidence=IMP] [GO:0016593 "Cdc73/Paf1
complex" evidence=IPI] [GO:0006368 "transcription elongation from
RNA polymerase II promoter" evidence=IGI;IMP] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0004535 "poly(A)-specific ribonuclease activity"
evidence=IEA] [GO:0048478 "replication fork protection"
evidence=IGI] [GO:0006260 "DNA replication" evidence=IGI]
[GO:0000076 "DNA replication checkpoint" evidence=IGI] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IDA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=IGI;IMP;IDA] [GO:0090305
"nucleic acid phosphodiester bond hydrolysis" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IPI] InterPro:IPR001611 PROSITE:PS51450
SGD:S000000019 Pfam:PF03372 GO:GO:0005634 EMBL:L05146 EMBL:BK006935
GO:GO:0046872 eggNOG:COG4886 InterPro:IPR003591 SMART:SM00369
GO:GO:0003723 GO:GO:0006368 GO:GO:0000932 InterPro:IPR025875
Pfam:PF12799 GeneTree:ENSGT00550000074364 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0048478 GO:GO:0032968 GO:GO:0004535
GO:GO:0000289 GO:GO:0030015 GO:GO:0007089 KO:K12603
HOGENOM:HOG000294222 OrthoDB:EOG4Z39P3 EMBL:S50459 PIR:S36713
RefSeq:NP_009381.1 PDB:4B8C PDBsum:4B8C ProteinModelPortal:P31384
SMR:P31384 DIP:DIP-2522N IntAct:P31384 MINT:MINT-615079
STRING:P31384 PaxDb:P31384 PeptideAtlas:P31384 EnsemblFungi:YAL021C
GeneID:851212 KEGG:sce:YAL021C OMA:CMQEVET NextBio:968091
Genevestigator:P31384 GermOnline:YAL021C GO:GO:0000175
GO:GO:0000076 Uniprot:P31384
Length = 837
Score = 390 (142.3 bits), Expect = 4.6e-37, Sum P(2) = 4.6e-37
Identities = 106/316 (33%), Positives = 159/316 (50%)
Query: 221 PSPSPRRLFPVN--GSDMNMMGHIDSDGRISSTG----TFSVLSYNILSDVYATSESYSY 274
P P RR +N G + +T TF+VLSYN L YAT + Y Y
Sbjct: 466 PLPHERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQHYATPKMYRY 525
Query: 275 CPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALY--KRKT 332
PSWALSW YRR L +I+ Y +D++CLQEV++ FEE++ P LDKHGY ++ K +
Sbjct: 526 TPSWALSWDYRRNKLKEQILSYDSDLLCLQEVESKTFEEYWVPLLDKHGYTGIFHAKARA 585
Query: 333 NEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLV-K 391
+++ + +DGC FF+RD+F + K ++F+ A + ++ LNR + K
Sbjct: 586 KTMHSKDSKKVDGCCIFFKRDQFKLITKDAMDFSGAWMKHKKF----QRTEDYLNRAMNK 641
Query: 392 DNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAA 451
DNVAL + L+ S DT + TH++ + DVK +QV LL LE +
Sbjct: 642 DNVALFLKLQHIPSG---DT------IWAVTTHLHWDPKFNDVKTFQVGVLLDHLETLLK 692
Query: 452 SA-------DI---PMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKL 501
DI P+L+CGDFNS SA + L+ G+V+ +H + +
Sbjct: 693 EETSHNFRQDIKKFPVLICGDFNSYINSAVYELINTGRVQ-IHQEGNGRDFGYMS-EKNF 750
Query: 502 THQLPLVSAYSSFARI 517
+H L L S+Y+ +
Sbjct: 751 SHNLALKSSYNCIGEL 766
Score = 71 (30.1 bits), Expect = 4.6e-37, Sum P(2) = 4.6e-37
Identities = 17/58 (29%), Positives = 25/58 (43%)
Query: 539 FTHCTRDFIGTLDYIFYTAXXXXXXXXXXXXXXXXXRKDTALPSPEWSSDHIALLAEF 596
FT+ T F +DYI+++ K P+ ++ SDHI LLA F
Sbjct: 768 FTNFTPSFTDVIDYIWFSTHALRVRGLLGEVDPEYVSKFIGFPNDKFPSDHIPLLARF 825
>FB|FBgn0011725 [details] [associations]
symbol:twin "twin" species:7227 "Drosophila melanogaster"
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=ISS]
[GO:0030014 "CCR4-NOT complex" evidence=ISS;IDA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001611 PROSITE:PS51450 Pfam:PF03372 EMBL:AE014297
GO:GO:0005737 InterPro:IPR003591 SMART:SM00369 GO:GO:0048477
InterPro:IPR025875 Pfam:PF12799 GeneTree:ENSGT00550000074364
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0030014 GO:GO:0000289
KO:K12603 OMA:YMLDNLA UniGene:Dm.33521 GeneID:42880
KEGG:dme:Dmel_CG31137 CTD:42880 FlyBase:FBgn0011725 ChiTaRS:twin
GenomeRNAi:42880 NextBio:831058 EMBL:BT010039 RefSeq:NP_732964.1
SMR:Q8IMX1 STRING:Q8IMX1 EnsemblMetazoa:FBtr0084569 UCSC:CG31137-RC
InParanoid:Q8IMX1 Uniprot:Q8IMX1
Length = 567
Score = 402 (146.6 bits), Expect = 2.0e-36, P = 2.0e-36
Identities = 117/362 (32%), Positives = 169/362 (46%)
Query: 254 FSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEE 313
F+V+ YN+L D YAT + Y YCPSWAL W YR+++++ EI Y ADI+ LQE++ + F
Sbjct: 207 FTVMCYNVLCDKYATRQMYGYCPSWALCWEYRKKSIIDEIRHYAADIISLQEIETEQFYH 266
Query: 314 FFAPELDKHGYQALY--KRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQS 371
FF PEL GY+ ++ K + + +DGCA FFR +F+ +K+ +EFN+ A +
Sbjct: 267 FFLPELKNDGYEGIFSPKSRAKTMSELERKYVDGCAIFFRASKFTLIKESLIEFNQLAMA 326
Query: 372 LTDAILPSAQKKNALNRLV-KDNVALIVVLEAKFS--NQGADTPGKRQLLCVANTHVNVH 428
+ N LNR++ KDN+ L +L+ K + ++ Q L V H++
Sbjct: 327 NAEG------SDNMLNRVMPKDNIGLAALLKVKENAWEPMSEVTQISQPLLVCTAHIHWD 380
Query: 429 QELKDVKLWQVHTLLKGLEKIAASAD-------------IPMLVCGDFNSVPGSAPHALL 475
E DVKL Q L L+ I A + +L+CGDFNS+P S L
Sbjct: 381 PEFCDVKLIQTMMLSNELKTIIDEASHSFRPGHKNDSNAVQLLLCGDFNSLPDSGVVEFL 440
Query: 476 AMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTN 535
G+V H D D + +L L + + F L + M P TN
Sbjct: 441 GKGRVSMDHLDFK-D-----MGYKSCLQRL-LSNDTNEFTH-SFKLASAYNEDIM-PHTN 491
Query: 536 EPLFTHCTRDFIGTLDYIFYTAXXXXXXXXXXXXXXXXXRKDTAL--PSPEWSSDHIALL 593
T DF G +DYIFYT R++ + P P SDH LL
Sbjct: 492 Y------TFDFKGIIDYIFYTKTGMVPLGLLGPVSNDWLRENKVVGCPHPHIPSDHFPLL 545
Query: 594 AE 595
E
Sbjct: 546 VE 547
>UNIPROTKB|F1NGS9 [details] [associations]
symbol:PDE12 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005739 "mitochondrion" evidence=IEA] Pfam:PF03372
GO:GO:0005739 GeneTree:ENSGT00550000074364 InterPro:IPR005135
SUPFAM:SSF56219 OMA:FRWYKEA EMBL:AADN02014019 IPI:IPI00572753
Ensembl:ENSGALT00000009018 Uniprot:F1NGS9
Length = 569
Score = 353 (129.3 bits), Expect = 3.1e-36, Sum P(3) = 3.1e-36
Identities = 113/349 (32%), Positives = 174/349 (49%)
Query: 175 GRSKTYTPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRVIPAPSPSPRRLFPVNGS 234
G + +TPS +G LK C D + G P + +S + A P V
Sbjct: 185 GGERVFTPSNALVGLRLKLRCTPGDGARRF--GAPREVESSGPVEA-GPG------VCTF 235
Query: 235 DMNMMGHIDSDGRISSTGTFSVLSYNILSDVYATSES-----YSYCPSWALSWAYRRQNL 289
D H+ + ++ G+ +SYNIL+D YA +E Y YC +AL YR QNL
Sbjct: 236 DAR---HLYTR-KVCGRGSVRAVSYNILADAYAQTEFSRTVLYPYCAPYALEVDYR-QNL 290
Query: 290 LR-EIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEVYNGNPHTIDGCAT 348
L+ E+ GY AD++CLQEV F + AP LD G + L+K K + H +G AT
Sbjct: 291 LKKELAGYNADLICLQEVDKSVFADSLAPALDAFGLEGLFKIKEKQ------H--EGLAT 342
Query: 349 FFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRL--VKDNVAL-IVVLEAKFS 405
F+RRD+FS + ++++ F++A L++ + A+ ++ L R V+D V VL+
Sbjct: 343 FYRRDKFSLLSRHDITFSEAL--LSEPL--HAELRDRLGRYPAVRDKVLQRSSVLQVSVL 398
Query: 406 NQGADTPGKRQLLCVANTHVNVHQELK--DVKLWQVHTLLKGLEKIAASA--DIPMLVCG 461
D P K+ LCVANTH+ H + +++L Q+ L ++ +A +IP++ CG
Sbjct: 399 QSETD-PSKK--LCVANTHLYWHPKALGGNIRLIQIAVALSHIKYVACDLYPNIPLIFCG 455
Query: 462 DFNSVPGSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSA 510
DFNS P S + + G + H D A + R + L+H L SA
Sbjct: 456 DFNSTPSSGTYGFINTGGIAEDHEDWASNGEEE-RCNMPLSHPFKLQSA 503
Score = 81 (33.6 bits), Expect = 3.1e-36, Sum P(3) = 3.1e-36
Identities = 20/71 (28%), Positives = 28/71 (39%)
Query: 529 RMDPTTNEPLFTHCTRDFIGTLDYIFYTAXXXXXXXXXXXXXXXXXRKDTALPSPEWSSD 588
++ EP +T+ F G LDY+F ALPS SD
Sbjct: 499 KLQSACGEPAYTNYVGGFYGCLDYVFIDQNALEVEQVIPLPSHEEVTTHQALPSVSHPSD 558
Query: 589 HIALLAEFRCK 599
HIAL+ + + K
Sbjct: 559 HIALVCDLKWK 569
Score = 49 (22.3 bits), Expect = 3.1e-36, Sum P(3) = 3.1e-36
Identities = 22/87 (25%), Positives = 34/87 (39%)
Query: 22 PYVLLRRPDNAVTTEDVPESAPI-DGHFLRYKWYRIQSDRKVAVCSVHPSEQATLQCLG- 79
P V L D +E+VP +A DG L+ R + +R + ++ L
Sbjct: 96 PEVRLFSRDGRAVSEEVPNAAAWQDGAVLQVGAARYRVERNPPALTELRLPRSLLAGFPV 155
Query: 80 CVKAKIPVAKSYHCSPKCFSDAWQHHR 106
C K A HC + + AW+ R
Sbjct: 156 CPKVSAEFAAPQHCLFR-WCPAWEEER 181
>CGD|CAL0002486 [details] [associations]
symbol:CCR4 species:5476 "Candida albicans" [GO:0030015
"CCR4-NOT core complex" evidence=IEA;ISM] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IEA;ISM] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=IEA;ISM] [GO:0009272 "fungal-type cell wall biogenesis"
evidence=IMP] [GO:0055091 "phospholipid homeostasis" evidence=IMP]
[GO:0009405 "pathogenesis" evidence=IMP] [GO:0036180 "filamentous
growth of a population of unicellular organisms in response to
biotic stimulus" evidence=IMP] [GO:0036170 "filamentous growth of a
population of unicellular organisms in response to starvation"
evidence=IMP] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0016593 "Cdc73/Paf1 complex"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0071216 "cellular response to biotic stimulus" evidence=IMP]
[GO:0009267 "cellular response to starvation" evidence=IMP]
[GO:0007089 "traversing start control point of mitotic cell cycle"
evidence=IEA] [GO:0048478 "replication fork protection"
evidence=IEA] [GO:0000076 "DNA replication checkpoint"
evidence=IEA] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IEA] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IEA] Pfam:PF00560 InterPro:IPR001611
PROSITE:PS51450 CGD:CAL0002486 Pfam:PF03372 GO:GO:0005634
GO:GO:0005737 GO:GO:0071216 GO:GO:0036180 GO:GO:0009405
GO:GO:0006355 GO:GO:0046872 eggNOG:COG4886 InterPro:IPR003591
SMART:SM00369 GO:GO:0006351 GO:GO:0003723 GO:GO:0055091
GO:GO:0009267 GO:GO:0009272 GO:GO:0090305 EMBL:AL033501
EMBL:AACQ01000053 EMBL:AACQ01000052 GO:GO:0036170
InterPro:IPR025875 Pfam:PF12799 InterPro:IPR005135 SUPFAM:SSF56219
GO:GO:0004535 KO:K12603 PIR:T18239 RefSeq:XP_717564.1
RefSeq:XP_717638.1 ProteinModelPortal:Q5A761 STRING:Q5A761
GeneID:3640749 GeneID:3640796 KEGG:cal:CaO19.12567
KEGG:cal:CaO19.5101 Uniprot:Q5A761
Length = 787
Score = 378 (138.1 bits), Expect = 9.2e-36, Sum P(2) = 9.2e-36
Identities = 94/251 (37%), Positives = 138/251 (54%)
Query: 250 STGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQND 309
S+ F+VLSYN L YAT + Y + PSWAL W YR+ L +E++ Y DIVC+QEV+
Sbjct: 452 SSDNFTVLSYNTLCQHYATPKMYKFTPSWALQWDYRKNLLEKEVLNYNTDIVCMQEVETK 511
Query: 310 HFEEFFAPELDKHGYQALYKRKTNE--VYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNK 367
F+EF+ P + +GY+ + KT + + +DGCATFF+ D+FS + K E+N
Sbjct: 512 TFQEFWLPVMTANGYKGYFFSKTRSKTMSETDSKKVDGCATFFKNDKFSLIHKQNFEYNS 571
Query: 368 AAQSLTDAILPSAQKKNALNRLV-KDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVN 426
+D + K+ NR + KDN+ALI L+ K S G++ + V NTH++
Sbjct: 572 VCMG-SDKY---KKTKDLFNRFMNKDNIALISYLQHKES-------GEK--IAVVNTHLH 618
Query: 427 VHQELKDVKLWQVHTLLKGLEKIA-------ASADIP---MLVCGDFNSVPGSAPHALLA 476
DVK QV LL+ L+ I ++ DI ++VCGDFNSV SA + L +
Sbjct: 619 WDPAFNDVKALQVGILLEELQGIIKKYRHTNSNEDIKNSSIVVCGDFNSVKDSAVYQLFS 678
Query: 477 MGKVEPVHPDL 487
G + H D+
Sbjct: 679 TGASKG-HEDM 688
Score = 73 (30.8 bits), Expect = 9.2e-36, Sum P(2) = 9.2e-36
Identities = 16/61 (26%), Positives = 25/61 (40%)
Query: 539 FTHCTRDFIGTLDYIFYTAXXXXXXXXXXXXXXXXXRKDTALPSPEWSSDHIALLAEFRC 598
FT+ T F +DYI+Y+ P + SDH+ +LA+F+
Sbjct: 719 FTNLTPAFTDNIDYIWYSTPTLQVKGLLGRVDEEYTSHSIGFPDANFPSDHVPILAKFQL 778
Query: 599 K 599
K
Sbjct: 779 K 779
>UNIPROTKB|Q5A761 [details] [associations]
symbol:CCR4 "Glucose-repressible alcohol dehydrogenase
transcriptional effector" species:237561 "Candida albicans SC5314"
[GO:0009267 "cellular response to starvation" evidence=IMP]
[GO:0009272 "fungal-type cell wall biogenesis" evidence=IMP]
[GO:0009405 "pathogenesis" evidence=IMP] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0036170 "filamentous growth of a
population of unicellular organisms in response to starvation"
evidence=IMP] [GO:0036180 "filamentous growth of a population of
unicellular organisms in response to biotic stimulus" evidence=IMP]
[GO:0055091 "phospholipid homeostasis" evidence=IMP] [GO:0071216
"cellular response to biotic stimulus" evidence=IMP] Pfam:PF00560
InterPro:IPR001611 PROSITE:PS51450 CGD:CAL0002486 Pfam:PF03372
GO:GO:0005634 GO:GO:0005737 GO:GO:0071216 GO:GO:0036180
GO:GO:0009405 GO:GO:0006355 GO:GO:0046872 eggNOG:COG4886
InterPro:IPR003591 SMART:SM00369 GO:GO:0006351 GO:GO:0003723
GO:GO:0055091 GO:GO:0009267 GO:GO:0009272 GO:GO:0090305
EMBL:AL033501 EMBL:AACQ01000053 EMBL:AACQ01000052 GO:GO:0036170
InterPro:IPR025875 Pfam:PF12799 InterPro:IPR005135 SUPFAM:SSF56219
GO:GO:0004535 KO:K12603 PIR:T18239 RefSeq:XP_717564.1
RefSeq:XP_717638.1 ProteinModelPortal:Q5A761 STRING:Q5A761
GeneID:3640749 GeneID:3640796 KEGG:cal:CaO19.12567
KEGG:cal:CaO19.5101 Uniprot:Q5A761
Length = 787
Score = 378 (138.1 bits), Expect = 9.2e-36, Sum P(2) = 9.2e-36
Identities = 94/251 (37%), Positives = 138/251 (54%)
Query: 250 STGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQND 309
S+ F+VLSYN L YAT + Y + PSWAL W YR+ L +E++ Y DIVC+QEV+
Sbjct: 452 SSDNFTVLSYNTLCQHYATPKMYKFTPSWALQWDYRKNLLEKEVLNYNTDIVCMQEVETK 511
Query: 310 HFEEFFAPELDKHGYQALYKRKTNE--VYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNK 367
F+EF+ P + +GY+ + KT + + +DGCATFF+ D+FS + K E+N
Sbjct: 512 TFQEFWLPVMTANGYKGYFFSKTRSKTMSETDSKKVDGCATFFKNDKFSLIHKQNFEYNS 571
Query: 368 AAQSLTDAILPSAQKKNALNRLV-KDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVN 426
+D + K+ NR + KDN+ALI L+ K S G++ + V NTH++
Sbjct: 572 VCMG-SDKY---KKTKDLFNRFMNKDNIALISYLQHKES-------GEK--IAVVNTHLH 618
Query: 427 VHQELKDVKLWQVHTLLKGLEKIA-------ASADIP---MLVCGDFNSVPGSAPHALLA 476
DVK QV LL+ L+ I ++ DI ++VCGDFNSV SA + L +
Sbjct: 619 WDPAFNDVKALQVGILLEELQGIIKKYRHTNSNEDIKNSSIVVCGDFNSVKDSAVYQLFS 678
Query: 477 MGKVEPVHPDL 487
G + H D+
Sbjct: 679 TGASKG-HEDM 688
Score = 73 (30.8 bits), Expect = 9.2e-36, Sum P(2) = 9.2e-36
Identities = 16/61 (26%), Positives = 25/61 (40%)
Query: 539 FTHCTRDFIGTLDYIFYTAXXXXXXXXXXXXXXXXXRKDTALPSPEWSSDHIALLAEFRC 598
FT+ T F +DYI+Y+ P + SDH+ +LA+F+
Sbjct: 719 FTNLTPAFTDNIDYIWYSTPTLQVKGLLGRVDEEYTSHSIGFPDANFPSDHVPILAKFQL 778
Query: 599 K 599
K
Sbjct: 779 K 779
>UNIPROTKB|F1RYS2 [details] [associations]
symbol:CNOT6L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0061157 "mRNA destabilization" evidence=IEA]
[GO:0008284 "positive regulation of cell proliferation"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0004535
"poly(A)-specific ribonuclease activity" evidence=IEA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IEA] InterPro:IPR001611
PROSITE:PS51450 Pfam:PF03372 GO:GO:0005737 GO:GO:0008284
GeneTree:ENSGT00550000074364 InterPro:IPR005135 SUPFAM:SSF56219
GO:GO:0000288 GO:GO:0004535 OMA:YMLDNLA GO:GO:0061157 EMBL:CU914220
Ensembl:ENSSSCT00000009846 Uniprot:F1RYS2
Length = 557
Score = 383 (139.9 bits), Expect = 1.4e-34, Sum P(2) = 1.4e-34
Identities = 123/378 (32%), Positives = 180/378 (47%)
Query: 247 RISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEV 306
+I + +F+V+ YN+L D YAT + Y YCPSWAL+W YR++ ++ EI+ ADI+ LQ+
Sbjct: 182 QILPSASFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEIVNCDADIISLQQN 241
Query: 307 QNDHFEE-----FFAPELDKHGYQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKY 361
+ F FF + K G+ R H +DGCA FF+ ++F+ V+K+
Sbjct: 242 PKELFSLLSLFFFFLKDKLKDGFFLQSSRAKIMSEQERKH-VDGCAIFFKTEKFTLVQKH 300
Query: 362 EVEFNKAAQSLTDAILPSAQKKNALNRLV-KDNVALIVVLEAKFSNQGADT-P---GKRQ 416
VEFN+ A + +D + LNR++ KDN+ + VVLE GA P +Q
Sbjct: 301 TVEFNQVAMANSDG------SEAMLNRVMTKDNIGVAVVLEVHKELFGAGVKPIHAADKQ 354
Query: 417 LLCVANTHVNVHQELKDVKLWQ----VHTLLKGLEKIAA-----SAD---IPMLVCGDFN 464
LL VAN H++ E DVKL Q V + LEK ++ +AD IP+++C D N
Sbjct: 355 LLIVANAHMHWDPEYSDVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCADLN 414
Query: 465 SVPGSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGME 524
S+P S L+ G V H D LR + L + SS RI G ++
Sbjct: 415 SLPDSGVVEYLSNGGVADNHKDFKE-----LRYNECLMNFSCNGKNGSSEGRITHGFQLK 469
Query: 525 HQRRRMDPTTNEPLFTHCTRDFIGTLDYIFYTAXXXXXXXXXXXXXXXXXRKD--TALPS 582
N +T+ T DF G +DYIFY+ ++ T P
Sbjct: 470 SAYEN-----NLMPYTNYTFDFKGVIDYIFYSKTHMNVLGVLGPLDPQWLVENNITGCPH 524
Query: 583 PEWSSDHIALLAEFRCKP 600
P SDH +LL + P
Sbjct: 525 PHIPSDHFSLLTQLELHP 542
Score = 39 (18.8 bits), Expect = 1.4e-34, Sum P(2) = 1.4e-34
Identities = 15/60 (25%), Positives = 27/60 (45%)
Query: 223 PSPRRLFPVNGSDMNMMG---H---IDSDGRISSTGTFSVLSYNILSDVYATSESYSYCP 276
P PRR++ + ++ G H ++ GR+ S T S+ S L+ ++ S P
Sbjct: 14 PDPRRIYTIMSAEEVANGKKSHWAELEISGRVRSLST-SLWSLTHLTALHLNDNYLSRIP 72
>UNIPROTKB|Q6L8Q7 [details] [associations]
symbol:PDE12 "2',5'-phosphodiesterase 12" species:9606
"Homo sapiens" [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] Pfam:PF03372
GO:GO:0005739 EMBL:CH471055 GO:GO:0016787 eggNOG:COG5239
InterPro:IPR005135 SUPFAM:SSF56219 CTD:201626 HOGENOM:HOG000006935
HOVERGEN:HBG061027 OMA:FRWYKEA OrthoDB:EOG4JDH6H EMBL:AB115695
EMBL:AK074423 EMBL:AK300374 EMBL:AL831824 IPI:IPI00174390
IPI:IPI00886797 RefSeq:NP_808881.3 UniGene:Hs.572993
ProteinModelPortal:Q6L8Q7 SMR:Q6L8Q7 IntAct:Q6L8Q7 STRING:Q6L8Q7
PhosphoSite:Q6L8Q7 DMDM:172046137 PaxDb:Q6L8Q7 PRIDE:Q6L8Q7
DNASU:201626 Ensembl:ENST00000311180 GeneID:201626 KEGG:hsa:201626
UCSC:uc003diw.4 GeneCards:GC03P057541 H-InvDB:HIX0003393
HGNC:HGNC:25386 HPA:HPA043171 neXtProt:NX_Q6L8Q7
PharmGKB:PA162399016 InParanoid:Q6L8Q7 PhylomeDB:Q6L8Q7
GenomeRNAi:201626 NextBio:90179 ArrayExpress:Q6L8Q7 Bgee:Q6L8Q7
CleanEx:HS_PDE12 Genevestigator:Q6L8Q7 Uniprot:Q6L8Q7
Length = 609
Score = 327 (120.2 bits), Expect = 1.0e-30, Sum P(2) = 1.0e-30
Identities = 113/369 (30%), Positives = 175/369 (47%)
Query: 160 PAAVTRSG-GETWFEVG-RSKTYTPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRV 217
P++++ S +W E + YTPS DIG LK C D + GH L + V
Sbjct: 213 PSSLSPSSPSSSWTETDVEERVYTPSNADIGLRLKLHCTPGDGQR---FGHSRELESVCV 269
Query: 218 IPAPSPSPRRLFPVNGSDMNMMGHIDSDGRISSTGTFSVLSYNILSDVYATSES-----Y 272
+ A P G+ H+ + +++ +SYNIL+D YA +E Y
Sbjct: 270 VEA---GP-------GTCTFDHRHLYTK-KVTEDALIRTVSYNILADTYAQTEFSRTVLY 318
Query: 273 SYCPSWALSWAYRRQNLL-REIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRK 331
YC +AL YR QNL+ +E+ GY AD++CLQEV F + P L+ G + +++ K
Sbjct: 319 PYCAPYALELDYR-QNLIQKELTGYNADVICLQEVDRAVFSDSLVPALEAFGLEGVFRIK 377
Query: 332 TNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQS-------LTDAIL-PSAQKK 383
+E G ATF+R+ +FS + ++++ F +A +S L +L PSAQ+K
Sbjct: 378 QHE----------GLATFYRKSKFSLLSQHDISFYEALESDPLHKELLEKLVLYPSAQEK 427
Query: 384 NALNRLVKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLL 443
L R +V + VL Q KR +CVANTH+ H + ++L Q+ L
Sbjct: 428 -VLQR---SSVLQVSVL------QSTKDSSKR--ICVANTHLYWHPKGGYIRLIQMAVAL 475
Query: 444 KGLEKIAASA--DIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKL 501
+ ++ IP++ CGDFNS P + + + G + H D A + R + L
Sbjct: 476 AHIRHVSCDLYPGIPVIFCGDFNSTPSTGMYHFVINGSIPEDHEDWASNGEEE-RCNMSL 534
Query: 502 THQLPLVSA 510
TH L SA
Sbjct: 535 THFFKLKSA 543
Score = 79 (32.9 bits), Expect = 1.0e-30, Sum P(2) = 1.0e-30
Identities = 21/71 (29%), Positives = 28/71 (39%)
Query: 529 RMDPTTNEPLFTHCTRDFIGTLDYIFYTAXXXXXXXXXXXXXXXXXRKDTALPSPEWSSD 588
++ EP +T+ F G LDYIF ALPS SD
Sbjct: 539 KLKSACGEPAYTNYVGGFHGCLDYIFIDLNALEVEQVIPLPSHEEVTTHQALPSVSHPSD 598
Query: 589 HIALLAEFRCK 599
HIAL+ + + K
Sbjct: 599 HIALVCDLKWK 609
>ZFIN|ZDB-GENE-060519-25 [details] [associations]
symbol:pde12 "phosphodiesterase 12" species:7955
"Danio rerio" [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] [GO:0003674
"molecular_function" evidence=ND] Pfam:PF03372
ZFIN:ZDB-GENE-060519-25 GeneTree:ENSGT00550000074364
InterPro:IPR005135 SUPFAM:SSF56219 EMBL:FP067440 EMBL:CU638695
IPI:IPI00882873 Ensembl:ENSDART00000067608 ArrayExpress:F1RBC5
Bgee:F1RBC5 Uniprot:F1RBC5
Length = 591
Score = 330 (121.2 bits), Expect = 3.9e-30, Sum P(2) = 3.9e-30
Identities = 102/335 (30%), Positives = 161/335 (48%)
Query: 161 AAVTRSGGETWFEVGRSKTYTPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRVIPA 220
+A E W E G + +TPS DIG L +C + +G P L++S + A
Sbjct: 192 SAYITGDAECWREAGSERVFTPSNLDIGLRLMLKCTPGNGSK---IGEPKKLVSSSAVEA 248
Query: 221 PSPSPRRLFPVNGSDMNMMGHIDSDGRISSTGTFSVLSYNILSDVYATSES-----YSYC 275
P + D HI + +++ G+ V+SYNIL+DVYA ++ Y YC
Sbjct: 249 -GPG------ICTFDNR---HIYTQ-KLTDEGSLRVVSYNILADVYAQTDLSKTVLYPYC 297
Query: 276 PSWALSWAYRRQNLLR-EIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNE 334
+AL YR QNL++ E+ GY ADI+CLQEV F + P LD G +++ K +
Sbjct: 298 APYALQMDYR-QNLIKKELSGYNADIICLQEVDKCVFVDVLCPALDAFGLDGVFRIKEKQ 356
Query: 335 VYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNV 394
H +G AT+FRR + V++Y+V ++A TD I +K + + +K+ +
Sbjct: 357 ------H--EGLATYFRRSKLKLVEQYDVMLSEALT--TDPIHRELWEKVSCSPSLKEKI 406
Query: 395 AL-IVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASA 453
L+ D P + +LCV NTH+ E +V+L Q+ L+ ++++
Sbjct: 407 EKRSTTLQVTVLQSLCD-PSR--ILCVGNTHLYWRPEGGNVRLVQIAVALEHMKQVVTEK 463
Query: 454 D--IPMLVCGDFNSVPGSAPHALLAMGKVEPVHPD 486
++ GDFNS P S LL+ G + H D
Sbjct: 464 HPGARLIFSGDFNSTPSSGLFQLLSQGCIPEDHED 498
Score = 69 (29.3 bits), Expect = 3.9e-30, Sum P(2) = 3.9e-30
Identities = 20/61 (32%), Positives = 24/61 (39%)
Query: 537 PLFTHCTRDFIGTLDYIFYTAXXXXXXXXXXXXXXXXXRKDTALPSPEWSSDHIALLAEF 596
P FT+ F G LDYIF ALPS SDHIAL+ +
Sbjct: 525 PDFTNFVGGFQGCLDYIFVEPRTLQVEQVIPLPSLEEVSNCVALPSISHPSDHIALVCDL 584
Query: 597 R 597
+
Sbjct: 585 K 585
>UNIPROTKB|F1SGK9 [details] [associations]
symbol:PDE12 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005739 "mitochondrion" evidence=IEA] Pfam:PF03372
GO:GO:0005739 GeneTree:ENSGT00550000074364 InterPro:IPR005135
SUPFAM:SSF56219 OMA:FRWYKEA EMBL:CU467952 RefSeq:XP_001926497.2
UniGene:Ssc.33948 Ensembl:ENSSSCT00000012546 GeneID:100157651
KEGG:ssc:100157651 Uniprot:F1SGK9
Length = 609
Score = 322 (118.4 bits), Expect = 4.2e-30, Sum P(2) = 4.2e-30
Identities = 103/362 (28%), Positives = 168/362 (46%)
Query: 160 PAAVTRSGGET-WFEVG-RSKTYTPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRV 217
P++++ S W E G + YTPS DIG LK C + + P ++ +
Sbjct: 213 PSSLSPSSPSPGWTETGVNERVYTPSNADIGLRLKLHCTPGNGQRFGPSRELESVCSVEA 272
Query: 218 IPAPSPSPRRLFPVNGSDMNMMGHIDSDGRISSTGTFSVLSYNILSDVYATSES-----Y 272
P R H+ + +++ +SYN+L+D YA +E Y
Sbjct: 273 GPGTCTFDHR-------------HLYTK-KVTDDALIRTVSYNLLADTYAQTEFSRTVLY 318
Query: 273 SYCPSWALSWAYRRQNLL-REIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRK 331
YC +AL YR QNL+ +E+ GY AD++CLQEV D F + P L+ G + +++ K
Sbjct: 319 PYCAPYALELDYR-QNLIQKELTGYNADLICLQEVDRDVFTDSLVPALEAFGLEGVFRIK 377
Query: 332 TNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVK 391
+E G ATF+R+ +FS + ++++ F++A QS D + +K L +
Sbjct: 378 QHE----------GLATFYRKSKFSLLSQHDIAFHEALQS--DPLHKELLEKLVLYPAAQ 425
Query: 392 DNVAL-IVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIA 450
+ V VL+ D+ K +CVANTH+ H + ++L Q+ L + ++
Sbjct: 426 EKVLQRSSVLQVSVLQSTKDSSKK---ICVANTHLYWHPKGGYIRLIQMAVALAHIRHVS 482
Query: 451 ASA--DIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLV 508
IP++ CGDFNS P + + + G + H D A + R + LTH L
Sbjct: 483 CDLYPGIPVVFCGDFNSTPSTGMYHFVINGSIPEDHEDWASNGEEE-RCNMSLTHFFKLK 541
Query: 509 SA 510
SA
Sbjct: 542 SA 543
Score = 79 (32.9 bits), Expect = 4.2e-30, Sum P(2) = 4.2e-30
Identities = 21/71 (29%), Positives = 28/71 (39%)
Query: 529 RMDPTTNEPLFTHCTRDFIGTLDYIFYTAXXXXXXXXXXXXXXXXXRKDTALPSPEWSSD 588
++ EP +T+ F G LDYIF ALPS SD
Sbjct: 539 KLKSACGEPAYTNYVGGFHGCLDYIFIDLNTLEVEQVIPLPSHEEVTTHQALPSVSHPSD 598
Query: 589 HIALLAEFRCK 599
HIAL+ + + K
Sbjct: 599 HIALVCDLKWK 609
>UNIPROTKB|E2R412 [details] [associations]
symbol:PDE12 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005739 "mitochondrion" evidence=IEA]
Pfam:PF03372 GO:GO:0005739 GeneTree:ENSGT00550000074364
InterPro:IPR005135 SUPFAM:SSF56219 CTD:201626 OMA:FRWYKEA
EMBL:AAEX03012165 RefSeq:XP_541830.2 Ensembl:ENSCAFT00000012438
GeneID:484714 KEGG:cfa:484714 Uniprot:E2R412
Length = 616
Score = 322 (118.4 bits), Expect = 4.5e-30, Sum P(2) = 4.5e-30
Identities = 112/369 (30%), Positives = 179/369 (48%)
Query: 160 PAAVTRSG-GETWFEVG-RSKTYTPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRV 217
P++++ S +W E G + YTPS DIG LK C P G+ L SR
Sbjct: 220 PSSLSPSSPSPSWTETGVNERVYTPSNADIGLRLKLHCT--------P-GNGQRLGPSRE 270
Query: 218 IPAPSPSPRRLFPVNGSDMNMMGHIDSDGRISSTGTFSVLSYNILSDVYATSES-----Y 272
+ S P P G+ H+ + +++ +SYN+L+D YA +E Y
Sbjct: 271 LE--SVCPVEAGP--GTCTFDHRHLYTK-KVTDNSLIRTVSYNLLADTYAQTEFSRSVLY 325
Query: 273 SYCPSWALSWAYRRQNLL-REIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRK 331
YC +AL YR QNL+ +E+ GY AD++CLQEV + F + P L+ G + +++ K
Sbjct: 326 PYCAPYALELDYR-QNLIQKELTGYNADLICLQEVDRNVFTDSLVPALEAFGLEGVFRIK 384
Query: 332 TNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQS------LTDAIL--PSAQKK 383
+E G ATF+R+ +FS + ++++ F++A +S L + ++ PSAQ++
Sbjct: 385 QHE----------GLATFYRKTKFSLLSQHDISFHEALESDPLHKELLEKLVVYPSAQER 434
Query: 384 NALNRLVKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLL 443
L R +V + VL Q KR LCVANTH+ H + ++L Q+ L
Sbjct: 435 -VLQR---SSVLQVSVL------QSTKDSSKR--LCVANTHLYWHPKGGYIRLIQMAVAL 482
Query: 444 KGLEKIAASA--DIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKL 501
+ ++ IP++ CGDFNS P + + + G + H D A + R + L
Sbjct: 483 AHIRHVSCDLYPGIPVIFCGDFNSTPSTGMYHFVVNGSIPEDHEDWASNGEEE-RCNMSL 541
Query: 502 THQLPLVSA 510
+H L SA
Sbjct: 542 SHFFKLKSA 550
Score = 79 (32.9 bits), Expect = 4.5e-30, Sum P(2) = 4.5e-30
Identities = 21/71 (29%), Positives = 28/71 (39%)
Query: 529 RMDPTTNEPLFTHCTRDFIGTLDYIFYTAXXXXXXXXXXXXXXXXXRKDTALPSPEWSSD 588
++ EP +T+ F G LDYIF ALPS SD
Sbjct: 546 KLKSACGEPAYTNYVGGFHGCLDYIFIDLNALEVEQVIPLPSHEEVTTHQALPSVSHPSD 605
Query: 589 HIALLAEFRCK 599
HIAL+ + + K
Sbjct: 606 HIALVCDLKWK 616
>RGD|1310975 [details] [associations]
symbol:Pde12 "phosphodiesterase 12" species:10116 "Rattus
norvegicus" [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] Pfam:PF03372
RGD:1310975 GO:GO:0016787 eggNOG:COG5239
GeneTree:ENSGT00550000074364 InterPro:IPR005135 SUPFAM:SSF56219
HOGENOM:HOG000006935 HOVERGEN:HBG061027 EMBL:BC079396
IPI:IPI00464947 UniGene:Rn.225980 ProteinModelPortal:Q6AXQ5
PhosphoSite:Q6AXQ5 Ensembl:ENSRNOT00000017800 UCSC:RGD:1310975
OMA:LICLANT ArrayExpress:Q6AXQ5 Genevestigator:Q6AXQ5
Uniprot:Q6AXQ5
Length = 608
Score = 319 (117.4 bits), Expect = 5.8e-30, Sum P(2) = 5.8e-30
Identities = 107/350 (30%), Positives = 164/350 (46%)
Query: 171 WFEVG-RSKTYTPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRVIPAPSPSPRRLF 229
W E G + YTP DIG LK C + + G P+ L S V P + F
Sbjct: 224 WIETGVDERVYTPCNADIGLRLKLHCTPGNGQR---FG-PSRELES-VCPVEAGPGTCTF 278
Query: 230 PVNGSDMNMMGHIDSDGRISSTGTFSVLSYNILSDVYATSES-----YSYCPSWALSWAY 284
D H+ + +++ +SYNIL+D YA +E Y YC +AL Y
Sbjct: 279 -----DHR---HLYTK-KVTEDSFIRTVSYNILADTYAQTEFSRTVLYPYCAPYALELDY 329
Query: 285 RRQNLL-REIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEVYNGNPHTI 343
R QNL+ +E+ GY AD++CLQEV F + P L+ G + +++ K +E
Sbjct: 330 R-QNLIQKELTGYNADLICLQEVDRAVFSDSLVPALEAFGLEGVFRIKQHE--------- 379
Query: 344 DGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVAL-IVVLEA 402
G ATF+R+ +F + ++++ F +A +S D + +K ALN L ++ V VL+
Sbjct: 380 -GLATFYRKSKFRLLSQHDISFQEALKS--DPLHKELLEKLALNPLAQEKVLQRSSVLQI 436
Query: 403 KFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASA--DIPMLVC 460
D+ K +CVANTH+ H + ++L Q+ L + ++ IP++ C
Sbjct: 437 SVLQSTTDSSKK---ICVANTHLYWHPKGGYIRLIQMAAALVHIRHVSCDLYPGIPVIFC 493
Query: 461 GDFNSVPGSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSA 510
GDFNS P + + + G V H D A + R LTH L SA
Sbjct: 494 GDFNSTPSTGMYHFVINGSVPEDHEDWASNGEEE-RCGMSLTHCFKLKSA 542
Score = 81 (33.6 bits), Expect = 5.8e-30, Sum P(2) = 5.8e-30
Identities = 23/80 (28%), Positives = 32/80 (40%)
Query: 520 GLGMEHQRRRMDPTTNEPLFTHCTRDFIGTLDYIFYTAXXXXXXXXXXXXXXXXXRKDTA 579
G+ + H + + EP +T+ F G LDYIF A
Sbjct: 530 GMSLTHCFK-LKSACGEPAYTNYVGGFHGCLDYIFIDLNALEVEQVIPLPSHEEVTTHQA 588
Query: 580 LPSPEWSSDHIALLAEFRCK 599
LPS SDHIAL+ + + K
Sbjct: 589 LPSVSHPSDHIALVCDLKWK 608
>MGI|MGI:2443226 [details] [associations]
symbol:Pde12 "phosphodiesterase 12" species:10090 "Mus
musculus" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0008150 "biological_process"
evidence=ND] [GO:0016787 "hydrolase activity" evidence=IEA]
Pfam:PF03372 MGI:MGI:2443226 GO:GO:0005739 GO:GO:0016787
eggNOG:COG5239 GeneTree:ENSGT00550000074364 InterPro:IPR005135
SUPFAM:SSF56219 UniGene:Mm.297768 CTD:201626 HOGENOM:HOG000006935
HOVERGEN:HBG061027 OMA:FRWYKEA OrthoDB:EOG4JDH6H EMBL:AK051991
EMBL:AK082947 EMBL:AK088843 EMBL:AK155088 EMBL:AK161083
EMBL:AK167708 EMBL:BC064450 IPI:IPI00420284 RefSeq:NP_848783.3
UniGene:Mm.290758 ProteinModelPortal:Q3TIU4 SMR:Q3TIU4
STRING:Q3TIU4 PhosphoSite:Q3TIU4 PaxDb:Q3TIU4 PRIDE:Q3TIU4
Ensembl:ENSMUST00000052932 GeneID:211948 KEGG:mmu:211948
UCSC:uc007stb.1 InParanoid:Q3TIU4 ChiTaRS:PDE12 NextBio:373405
Bgee:Q3TIU4 Genevestigator:Q3TIU4 Uniprot:Q3TIU4
Length = 608
Score = 316 (116.3 bits), Expect = 2.2e-29, Sum P(2) = 2.2e-29
Identities = 97/340 (28%), Positives = 157/340 (46%)
Query: 160 PAAVTRSGGET-WFEVG-RSKTYTPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRV 217
PA+ + S + W E G + YTP DIG L+ C + + P +L
Sbjct: 212 PASSSHSSQPSAWIETGVDERVYTPCNADIGLRLRLHCTPGNGQRFGPSRELESLCPVEA 271
Query: 218 IPAPSPSPRRLFPVNGSDMNMMGHIDSDGRISSTGTFSVLSYNILSDVYATSES-----Y 272
P R H+ + +++ +SYNIL+D YA +E Y
Sbjct: 272 GPGTCTFDHR-------------HLYTK-KVTEDSFIRTVSYNILADTYAQTEFSRTVLY 317
Query: 273 SYCPSWALSWAYRRQNLL-REIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRK 331
YC +AL YR QNL+ +E+ GY AD++CLQEV F + P L+ G + +++ K
Sbjct: 318 PYCAPYALELDYR-QNLIQKELTGYNADLICLQEVDRAVFSDSLVPALEAFGLEGVFRIK 376
Query: 332 TNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVK 391
+E G ATF+R+ +F + ++++ F +A +S D + +K ALN L +
Sbjct: 377 QHE----------GLATFYRKSKFRLLSQHDISFQEALKS--DPLHKELLEKLALNPLAQ 424
Query: 392 DNVAL-IVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIA 450
+ V VL+ D+ K +CVANTH+ H + ++L Q+ L + ++
Sbjct: 425 EKVLQRSSVLQISVLQSTTDSSKK---ICVANTHLYWHPKGGYIRLIQMEVALVHIRHVS 481
Query: 451 ASA--DIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLA 488
IP++ CGDFNS P + + + G + H D A
Sbjct: 482 RDLYPGIPVIFCGDFNSTPSTGMYHFVISGSIAEDHEDWA 521
Score = 79 (32.9 bits), Expect = 2.2e-29, Sum P(2) = 2.2e-29
Identities = 21/71 (29%), Positives = 28/71 (39%)
Query: 529 RMDPTTNEPLFTHCTRDFIGTLDYIFYTAXXXXXXXXXXXXXXXXXRKDTALPSPEWSSD 588
++ EP +T+ F G LDYIF ALPS SD
Sbjct: 538 KLKSACGEPAYTNYVGGFHGCLDYIFIDLNTLEVEQVIPLPSHEEVTTHQALPSVSHPSD 597
Query: 589 HIALLAEFRCK 599
HIAL+ + + K
Sbjct: 598 HIALVCDLKWK 608
>UNIPROTKB|Q08DF7 [details] [associations]
symbol:PDE12 "2',5'-phosphodiesterase 12" species:9913 "Bos
taurus" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] Pfam:PF03372 GO:GO:0005739
GO:GO:0016787 eggNOG:COG5239 GeneTree:ENSGT00550000074364
InterPro:IPR005135 SUPFAM:SSF56219 EMBL:BC123772 IPI:IPI00717658
RefSeq:NP_001069601.1 UniGene:Bt.42120 ProteinModelPortal:Q08DF7
Ensembl:ENSBTAT00000020675 GeneID:538860 KEGG:bta:538860 CTD:201626
HOGENOM:HOG000006935 HOVERGEN:HBG061027 InParanoid:Q08DF7
OMA:FRWYKEA OrthoDB:EOG4JDH6H NextBio:20877627 Uniprot:Q08DF7
Length = 609
Score = 308 (113.5 bits), Expect = 2.0e-28, Sum P(2) = 2.0e-28
Identities = 102/333 (30%), Positives = 162/333 (48%)
Query: 171 WFEVG-RSKTYTPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRVIPAPSPSPRRLF 229
W E G + YTPS DIG LK C + + G P+ L S V P + F
Sbjct: 225 WTETGVDERVYTPSNADIGLRLKLHCTPGNGQR---FG-PSRELES-VCPVEAGPGTCTF 279
Query: 230 PVNGSDMNMMGHIDSDGRISSTGTFSVLSYNILSDVYATSES-----YSYCPSWALSWAY 284
D H+ + +++ +SYNIL+D YA +E Y YC +AL Y
Sbjct: 280 -----DHR---HLYTK-KVTDDALIRTVSYNILADTYAQTEFSRTVLYPYCAPYALELDY 330
Query: 285 RRQNLL-REIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEVYNGNPHTI 343
R QNL+ +E+ GY AD++CLQEV F + P L+ G + +++ K +E
Sbjct: 331 R-QNLIQKELTGYNADLICLQEVDRCVFTDSLMPALEAFGLEGVFRIKQHE--------- 380
Query: 344 DGCATFFRRDRFSHVKKYEVEFNKAAQS------LTD--AILPSAQKKNALNRLVKDNVA 395
G ATF+R+ +FS + ++++ F++A QS L + A+ PSAQ++ L R +V
Sbjct: 381 -GLATFYRKSKFSLLSQHDIAFHEALQSDPLHKELLEKLALYPSAQER-VLQR---SSVV 435
Query: 396 LIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASA-- 453
+ VL++ T + +CVANTH+ H + ++L Q+ L + ++
Sbjct: 436 QVSVLQS--------TKDSSKKICVANTHLYWHPKGGYIRLIQMAVALAHIRHVSCDLYP 487
Query: 454 DIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPD 486
IP++ CGDFNS P + + + G + H D
Sbjct: 488 GIPVIFCGDFNSTPSTGMYHFVINGSIAEDHED 520
Score = 79 (32.9 bits), Expect = 2.0e-28, Sum P(2) = 2.0e-28
Identities = 21/71 (29%), Positives = 28/71 (39%)
Query: 529 RMDPTTNEPLFTHCTRDFIGTLDYIFYTAXXXXXXXXXXXXXXXXXRKDTALPSPEWSSD 588
++ EP +T+ F G LDYIF ALPS SD
Sbjct: 539 KLKSACGEPAYTNYVGGFHGCLDYIFIDLHALEVEQVIPLPSHEEVTTHQALPSVSHPSD 598
Query: 589 HIALLAEFRCK 599
HIAL+ + + K
Sbjct: 599 HIALVCDLKWK 609
>MGI|MGI:1196310 [details] [associations]
symbol:Angel2 "angel homolog 2 (Drosophila)" species:10090
"Mus musculus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] Pfam:PF03372 MGI:MGI:1196310
eggNOG:COG5239 GeneTree:ENSGT00550000074364 HOGENOM:HOG000033940
HOVERGEN:HBG057379 InterPro:IPR005135 SUPFAM:SSF56219 CTD:90806
OrthoDB:EOG4255SF EMBL:AB041602 EMBL:AK088834 EMBL:AK135709
EMBL:AK158731 EMBL:AK166619 EMBL:AK169653 EMBL:BC024907
IPI:IPI00230182 IPI:IPI00757120 IPI:IPI00867916 IPI:IPI00867920
IPI:IPI00867925 RefSeq:NP_001185949.1 RefSeq:NP_067396.3
UniGene:Mm.289914 ProteinModelPortal:Q8K1C0 PhosphoSite:Q8K1C0
PaxDb:Q8K1C0 PRIDE:Q8K1C0 Ensembl:ENSMUST00000027947
Ensembl:ENSMUST00000066632 Ensembl:ENSMUST00000110899
Ensembl:ENSMUST00000123384 GeneID:52477 KEGG:mmu:52477
UCSC:uc007ebj.2 UCSC:uc007ebm.2 UCSC:uc007ebn.2 InParanoid:Q8K1C0
OMA:WEYICNH NextBio:309017 Bgee:Q8K1C0 CleanEx:MM_ANGEL2
Genevestigator:Q8K1C0 Uniprot:Q8K1C0
Length = 544
Score = 212 (79.7 bits), Expect = 7.8e-27, Sum P(3) = 7.8e-27
Identities = 52/123 (42%), Positives = 67/123 (54%)
Query: 254 FSVLSYNILS-DVYA-TSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHF 311
FSV+SYNILS D+ S Y +C L W++R N+L+EI + AD++CLQEVQ DH+
Sbjct: 167 FSVMSYNILSQDLLEDNSHLYRHCRRPVLHWSFRFPNILKEIKHFDADVLCLQEVQEDHY 226
Query: 312 EEFFAPELDKHGYQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQS 371
P L+ GY YK KT P DGCA F+ RFS + VEF +
Sbjct: 227 GTEIRPSLESLGYHCEYKMKTGR----KP---DGCAICFKHSRFSLLSVNPVEFCRRDIP 279
Query: 372 LTD 374
L D
Sbjct: 280 LLD 282
Score = 144 (55.7 bits), Expect = 7.8e-27, Sum P(3) = 7.8e-27
Identities = 33/95 (34%), Positives = 55/95 (57%)
Query: 389 LVKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEK 448
L +DN+ L+++L+ K A +P +C+ANTH+ + D+KL Q+ LL +
Sbjct: 281 LDRDNIGLVLLLQPKIPR--AASPS----ICIANTHLLYNPRRGDIKLTQLAMLLAEIAN 334
Query: 449 IAASAD---IPMLVCGDFNSVPGSAPHALLAMGKV 480
+ D P+++CGDFNSVPGS ++ + GK+
Sbjct: 335 VTHRKDGSSCPIVMCGDFNSVPGSPLYSFIKEGKL 369
Score = 64 (27.6 bits), Expect = 7.8e-27, Sum P(3) = 7.8e-27
Identities = 32/111 (28%), Positives = 43/111 (38%)
Query: 504 QLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHC-TRDFIGTLDYIFYTAXXXXX 562
++P VSA + + G + P T P T C +R I T+DYIFYTA
Sbjct: 433 EVP-VSADKVSSHLQHGFSLSSVYSHYVPDTGVPEVTTCHSRSAI-TVDYIFYTAKKENT 490
Query: 563 XXX------------XXXXXXXXXRKD----TALPSPEWSSDHIALLAEFR 597
+D LP+ SSDH+ LLA+FR
Sbjct: 491 AQGPGAEVALVGGLKLLARLSLLTEQDLWTVNGLPNEHNSSDHLPLLAKFR 541
>ZFIN|ZDB-GENE-030131-6498 [details] [associations]
symbol:angel2 "angel homolog 2 (Drosophila)"
species:7955 "Danio rerio" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] Pfam:PF03372
ZFIN:ZDB-GENE-030131-6498 eggNOG:COG5239
GeneTree:ENSGT00550000074364 HOGENOM:HOG000033940
HOVERGEN:HBG057379 InterPro:IPR005135 SUPFAM:SSF56219 EMBL:BX649591
EMBL:BC124747 IPI:IPI00506952 RefSeq:NP_001025131.1
UniGene:Dr.105422 ProteinModelPortal:Q5RGT6
Ensembl:ENSDART00000036371 GeneID:562704 KEGG:dre:562704 CTD:90806
InParanoid:A0AUR1 OMA:EQTERES OrthoDB:EOG4255SF NextBio:20884542
ArrayExpress:Q5RGT6 Bgee:Q5RGT6 Uniprot:Q5RGT6
Length = 569
Score = 225 (84.3 bits), Expect = 9.7e-26, Sum P(3) = 9.7e-26
Identities = 51/123 (41%), Positives = 69/123 (56%)
Query: 254 FSVLSYNILSDVYATSESYSY--CPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHF 311
FSV+SYNILS +Y Y C L W R N+++E+ Y ADI+CLQEVQ DH+
Sbjct: 199 FSVMSYNILSQDLLCDNTYLYRHCNPPVLDWRNRFPNIIKELEQYSADIMCLQEVQEDHY 258
Query: 312 EEFFAPELDKHGYQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQS 371
++ P L+ GY +KR+T P DGCA F+R+RFS V + VE+ +
Sbjct: 259 KQQIKPSLESLGYHCEFKRRTGL----KP---DGCAVIFKRERFSLVSCHPVEYFRRGVP 311
Query: 372 LTD 374
L D
Sbjct: 312 LMD 314
Score = 122 (48.0 bits), Expect = 9.7e-26, Sum P(3) = 9.7e-26
Identities = 32/82 (39%), Positives = 45/82 (54%)
Query: 391 KDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIA 450
+DNV LIV+L D +CVANTH+ + D+KL Q+ LL + +++
Sbjct: 315 RDNVGLIVLLRP------IDPHVSLSNICVANTHLLYNPRRGDIKLAQLAMLLAEISRVS 368
Query: 451 ASAD---IPMLVCGDFNSVPGS 469
D P+L+CGDFNSVP S
Sbjct: 369 QLPDSSVCPVLLCGDFNSVPWS 390
Score = 62 (26.9 bits), Expect = 9.7e-26, Sum P(3) = 9.7e-26
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 575 RKDTALPSPEWSSDHIALLAEFRCKPRA 602
+K LP+ SSDH+ LL FR P+A
Sbjct: 540 QKVNGLPNQHNSSDHLPLLTRFRLHPQA 567
>ASPGD|ASPL0000009331 [details] [associations]
symbol:ccr4 species:162425 "Emericella nidulans"
[GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IMP] [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR001611 PROSITE:PS51450 Pfam:PF03372 GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0046872 eggNOG:COG4886
GO:GO:0006351 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000061
GO:GO:0090305 InterPro:IPR025875 Pfam:PF12799 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0004535 KO:K12603 RefSeq:XP_661206.1
ProteinModelPortal:Q5B778 STRING:Q5B778
EnsemblFungi:CADANIAT00005142 GeneID:2873021 KEGG:ani:AN3602.2
HOGENOM:HOG000294222 OMA:CLQEIDQ OrthoDB:EOG4Z39P3 Uniprot:Q5B778
Length = 675
Score = 316 (116.3 bits), Expect = 2.3e-25, P = 2.3e-25
Identities = 113/375 (30%), Positives = 169/375 (45%)
Query: 249 SSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQN 308
+S SVLSYN L D AT Y Y PS LSW +RR+ +L E+ + DI+CLQE+
Sbjct: 304 TSPDKVSVLSYNTLCDSSATQSHYGYAPSRVLSWEFRRETILNELRAHDPDIICLQEIDQ 363
Query: 309 DHFEEFFAPELDKHGYQALY--KRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFN 366
+ EFF +L Y+ ++ + + + + +DGCATFF+ +F + K + F
Sbjct: 364 GSYNEFFREQLAYSDYKGVFWPRGRAMGMQEEDAKGVDGCATFFKGSKFILLDKQVINFG 423
Query: 367 KAAQSLTDAILPSAQKKNALNRL-VKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHV 425
+ A DA Q + NRL KD++A+IV LE + + G R + + N H+
Sbjct: 424 QTAVRRPDA---KGQD-DIYNRLWQKDHIAVIVFLENRQT-------GSRFI--IVNAHL 470
Query: 426 NVHQELKDVKLWQVHTLLKGLEKIAAS-ADIPMLVCGD---FN--------SVPGSAPHA 473
KDVKL Q L++ + K + A P C D F ++P AP A
Sbjct: 471 YWDPAFKDVKLIQTAILMEEITKHSEKYAKWPP--CTDKAAFRFREAQGEQTMPEPAPSA 528
Query: 474 LLAMGKVEPVHP--DLAVDPLTI---LRPHTKLTHQLPLVSA--YSSFARIGVGLGMEHQ 526
A G P+ D P + L + L + P + Y + +++G M H
Sbjct: 529 EYASGDQIPLFMCGDFNSSPGSAAYNLIANGGLIEEHPDLEKRMYGNLSKVG----MTHP 584
Query: 527 RRRMDP--TTNEPLFTHCTRDFIGTLDYIFYTAXXXXXXXXXXXXXXXXXRKDTALPSPE 584
+ E FT+ T DF LDYI+Y++ ++ P+
Sbjct: 585 FKLKSAYGAIGELSFTNYTPDFKDILDYIWYSSNTVHVSGLLGEVDKDYLQRVPGFPNYH 644
Query: 585 WSSDHIALLAEFRCK 599
+ SDHIALLAEF K
Sbjct: 645 FPSDHIALLAEFSVK 659
>TAIR|locus:2028611 [details] [associations]
symbol:AT1G31500 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0016787 "hydrolase activity" evidence=ISS]
Pfam:PF03372 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0046872 GO:GO:0006351
EMBL:AC074360 GO:GO:0003723 GO:GO:0090305 eggNOG:COG5239
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0004535 KO:K12603
EMBL:AC027135 EMBL:BT005746 EMBL:BT006109 EMBL:BX813786
EMBL:BX815872 EMBL:BX814736 EMBL:AK228566 IPI:IPI00516607
IPI:IPI00534982 IPI:IPI00548899 IPI:IPI00847028 IPI:IPI00915129
IPI:IPI00915138 RefSeq:NP_001077640.1 RefSeq:NP_174435.2
RefSeq:NP_973943.2 RefSeq:NP_973944.1 UniGene:At.40328
ProteinModelPortal:A8MS41 SMR:A8MS41 PaxDb:A8MS41 PRIDE:A8MS41
EnsemblPlants:AT1G31500.4 GeneID:840040 KEGG:ath:AT1G31500
TAIR:At1g31500 HOGENOM:HOG000265770 InParanoid:Q3ED43 OMA:CLKWKAR
PhylomeDB:A8MS41 ProtClustDB:CLSN2680732 Genevestigator:A8MS41
Uniprot:A8MS41
Length = 417
Score = 250 (93.1 bits), Expect = 7.4e-24, Sum P(3) = 7.4e-24
Identities = 85/276 (30%), Positives = 125/276 (45%)
Query: 254 FSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEE 313
F ++SYNIL+ VY S + P L W R +L + +AD CLQEV D ++
Sbjct: 92 FRLVSYNILAQVYVKSALLPHSPPACLKWKARSHAILSVLKNLQADFFCLQEV--DEYDS 149
Query: 314 FFAPELDKHGYQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSL- 372
F+ +D GY +Y ++T + DGCA F++ V K +E+N S+
Sbjct: 150 FYRNNMDSLGYSGIYIQRTGQ------RKRDGCAIFYKPSCAELVTKERIEYNDLVDSIK 203
Query: 373 TDAILPSAQKKNALNR---LVKD----NVALIVVLEAKFSNQGADTPGK--RQLLCVANT 423
D++ S QK N KD N L+ + A K + ++ VANT
Sbjct: 204 ADSVSCSEQKIETSNEGKDSRKDSRDLNDPLVRLKRDCVGIMAAFRINKPFQHIVIVANT 263
Query: 424 HVNVHQELKDVKLWQVHTLLKGLE--KIAASADI---P-MLVCGDFNSVPGSAPHALLAM 477
H+ EL DVKL Q LL L K S + P +L+ GDFNS+PG ++ L
Sbjct: 264 HLYWDPELADVKLAQAKYLLSRLAQFKTLISDEFECTPSLLLAGDFNSIPGDMVYSYLVS 323
Query: 478 GKVEP---VHPDLAVDPLT----ILRPHTKLTHQLP 506
G +P + + A PL+ + R K T+ P
Sbjct: 324 GNAKPTETIEEEEAPVPLSSVYEVTRGEPKFTNCTP 359
Score = 81 (33.6 bits), Expect = 7.4e-24, Sum P(3) = 7.4e-24
Identities = 22/68 (32%), Positives = 28/68 (41%)
Query: 533 TTNEPLFTHCTRDFIGTLDYIFYTAXXXXXXXXXXXXXXXXXRKDTA-LPSPEWSSDHIA 591
T EP FT+CT F TLDYIF + LP+ SDH+
Sbjct: 348 TRGEPKFTNCTPGFTNTLDYIFISPSDFIKPVSILQLPEPDSPDVVGFLPNHHHPSDHLP 407
Query: 592 LLAEFRCK 599
+ AEF +
Sbjct: 408 IGAEFEIR 415
Score = 43 (20.2 bits), Expect = 7.4e-24, Sum P(3) = 7.4e-24
Identities = 21/75 (28%), Positives = 31/75 (41%)
Query: 209 PNTLLTSRVI-------PAPSPSPRRLFPVNGSDMNMMGHIDSDGRISSTGTFSVLSYNI 261
PN LL +VI PA P R+ V G D+ D I + V YN
Sbjct: 13 PNLLLPRKVISRRMSTNPAIEPKVRKFESVEGVDIGSRNKSDGFFAIPLYLSKLVALYNC 72
Query: 262 --LSDVYATSESYSY 274
LS + ++E++ +
Sbjct: 73 ISLSRIGTSNENFVF 87
>MGI|MGI:1915987 [details] [associations]
symbol:Angel1 "angel homolog 1 (Drosophila)" species:10090
"Mus musculus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] Pfam:PF03372 MGI:MGI:1915987
EMBL:AC102689 EMBL:BC019148 EMBL:AK220354 IPI:IPI00122555
RefSeq:NP_653107.2 UniGene:Mm.63979 ProteinModelPortal:Q8VCU0
PhosphoSite:Q8VCU0 PaxDb:Q8VCU0 PRIDE:Q8VCU0 DNASU:68737
Ensembl:ENSMUST00000021682 GeneID:68737 KEGG:mmu:68737
UCSC:uc011ypj.1 CTD:23357 eggNOG:COG5239
GeneTree:ENSGT00550000074364 HOGENOM:HOG000033940
HOVERGEN:HBG057379 InParanoid:Q8VCU0 OMA:LYNFIRD OrthoDB:EOG4229KD
ChiTaRS:ANGEL1 NextBio:327814 Bgee:Q8VCU0 Genevestigator:Q8VCU0
InterPro:IPR005135 SUPFAM:SSF56219 Uniprot:Q8VCU0
Length = 667
Score = 182 (69.1 bits), Expect = 8.4e-22, Sum P(3) = 8.4e-22
Identities = 43/114 (37%), Positives = 62/114 (54%)
Query: 254 FSVLSYNILSD--VYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHF 311
F+++SYNIL+ + +SE Y +C L+W YR NL++E + DI+CLQEVQ DH+
Sbjct: 242 FTLMSYNILAQDLMQQSSELYLHCHPDILNWNYRFANLMQEFQHWDPDILCLQEVQEDHY 301
Query: 312 EEFFAPELDKHGYQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEF 365
E P L G+ YKR+T DGCA ++ RF + VE+
Sbjct: 302 WEQLEPSLRMMGFTCFYKRRTG-------CKTDGCAVCYKPTRFRLLCASPVEY 348
Score = 137 (53.3 bits), Expect = 8.4e-22, Sum P(3) = 8.4e-22
Identities = 36/99 (36%), Positives = 56/99 (56%)
Query: 386 LNRLVKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKG 445
L L +DNV L+++L+ +G L CVANTHV + DVKL Q+ LL
Sbjct: 353 LELLNRDNVGLVLLLQPLVP-EGLGQVSVAPL-CVANTHVLYNPRRGDVKLAQMAILLAE 410
Query: 446 LEKIAASAD---IPMLVCGDFNSVPGSAPHALLAMGKVE 481
++K+A +D P+++CGD NSVP S + + G+++
Sbjct: 411 VDKVARLSDGSHCPIILCGDLNSVPDSPLYNFIRDGELQ 449
Score = 60 (26.2 bits), Expect = 8.4e-22, Sum P(3) = 8.4e-22
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 580 LPSPEWSSDHIALLAEF 596
LP+P +SSDH+ LLA F
Sbjct: 644 LPNPFYSSDHLCLLASF 660
>UNIPROTKB|A2VE74 [details] [associations]
symbol:CCRN4L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IEA] Pfam:PF03372 eggNOG:COG5239
GeneTree:ENSGT00550000074364 InterPro:IPR005135 SUPFAM:SSF56219
CTD:25819 HOGENOM:HOG000237357 HOVERGEN:HBG006512 OMA:HPEYLVS
OrthoDB:EOG4NZTTH EMBL:DAAA02044446 EMBL:BC133608 IPI:IPI00693881
RefSeq:NP_001075923.1 UniGene:Bt.27843 STRING:A2VE74
Ensembl:ENSBTAT00000007876 GeneID:540641 KEGG:bta:540641
InParanoid:A2VE74 NextBio:20878745 Uniprot:A2VE74
Length = 427
Score = 176 (67.0 bits), Expect = 8.9e-20, Sum P(4) = 8.9e-20
Identities = 45/128 (35%), Positives = 67/128 (52%)
Query: 242 IDSDGRISSTGTFSVLSYNILSDVYATS-ESYSYCPSWALSWAYRRQNLLREIIGYRADI 300
+ +DG SS V+ +NIL+ +++ CP AL W R+ +L EI+ Y+ DI
Sbjct: 132 LPADGP-SSHPPIRVMQWNILAQALGEGKDNFVQCPMEALKWEERKCLILEEILAYQPDI 190
Query: 301 VCLQEVQNDHFEEFFAPELDKHGYQALYKRKT-----NEVYNGNPHTIDGCATFFRRDRF 355
+CLQEV DH+ + F P L + GYQ + K + +N P DGCA FF ++RF
Sbjct: 191 LCLQEV--DHYFDTFQPLLSRLGYQGTFFPKPWSPCLDVEHNNGP---DGCALFFLQNRF 245
Query: 356 SHVKKYEV 363
V +
Sbjct: 246 KLVNSANI 253
Score = 97 (39.2 bits), Expect = 8.9e-20, Sum P(4) = 8.9e-20
Identities = 30/92 (32%), Positives = 45/92 (48%)
Query: 376 ILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVK 435
++ SA + L + VA+ LE K S+ RQ C+A TH+ + +
Sbjct: 247 LVNSANIRLTAMTLKTNQVAIAQTLECKESS--------RQF-CIAVTHLKARTGWERFR 297
Query: 436 LWQVHTLLKGLEKIAASADIPMLVCGDFNSVP 467
Q LL+ L+ I A IP++VCGDFN+ P
Sbjct: 298 SAQGCDLLQNLQTITQGAKIPLIVCGDFNAEP 329
Score = 66 (28.3 bits), Expect = 8.9e-20, Sum P(4) = 8.9e-20
Identities = 23/94 (24%), Positives = 36/94 (38%)
Query: 506 PLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCTR---DFIGTLDYIFYTAXXXXX 562
P Y FA + L ++ D + P T R + TLDYI+Y+
Sbjct: 329 PTEEVYKHFASSSLNLNSAYKLLSADGQSEPPYTTWKIRTSGECRHTLDYIWYSRQALSV 388
Query: 563 XXXXXXXXXXXXRKDTALPSPEWSSDHIALLAEF 596
+ LPS + SDH++L+ +F
Sbjct: 389 RSALDLLTEEQIGPNR-LPSFNYPSDHLSLVCDF 421
Score = 46 (21.3 bits), Expect = 8.9e-20, Sum P(4) = 8.9e-20
Identities = 9/15 (60%), Positives = 9/15 (60%)
Query: 216 RVIPAPSPSPRRLFP 230
R P P P PRRL P
Sbjct: 21 RRAPGPPPPPRRLSP 35
>UNIPROTKB|F1PFN1 [details] [associations]
symbol:CCRN4L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IEA] [GO:0000290 "deadenylation-dependent decapping
of nuclear-transcribed mRNA" evidence=IEA] Pfam:PF03372
GeneTree:ENSGT00550000074364 InterPro:IPR005135 SUPFAM:SSF56219
OMA:HPEYLVS EMBL:AAEX03011735 Ensembl:ENSCAFT00000005996
Uniprot:F1PFN1
Length = 365
Score = 172 (65.6 bits), Expect = 3.3e-19, Sum P(3) = 3.3e-19
Identities = 43/121 (35%), Positives = 63/121 (52%)
Query: 249 SSTGTFSVLSYNILSDVYATS-ESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQ 307
SS V+ +NIL+ +++ CP AL W R+ +L EI+ Y+ DI+CLQEV
Sbjct: 72 SSHPPIRVMQWNILAQALGEGKDNFVQCPVEALKWEERKCLILEEILAYQPDILCLQEV- 130
Query: 308 NDHFEEFFAPELDKHGYQALYKRKT-----NEVYNGNPHTIDGCATFFRRDRFSHVKKYE 362
DH+ + F P L + GYQ + K + +N P DGCA FF ++RF V
Sbjct: 131 -DHYFDTFQPLLSRLGYQGTFFPKPWSPCLDVEHNNGP---DGCALFFLQNRFKLVNSAN 186
Query: 363 V 363
+
Sbjct: 187 I 187
Score = 102 (41.0 bits), Expect = 3.3e-19, Sum P(3) = 3.3e-19
Identities = 30/92 (32%), Positives = 46/92 (50%)
Query: 376 ILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVK 435
++ SA + L + VA++ LE K S+ RQ C+A TH+ + +
Sbjct: 181 LVNSANIRLTAMTLKTNQVAIVQTLECKESS--------RQF-CIAVTHLKARTGWERFR 231
Query: 436 LWQVHTLLKGLEKIAASADIPMLVCGDFNSVP 467
Q LL+ L+ I A IP++VCGDFN+ P
Sbjct: 232 SAQGCDLLQNLQNITQGAKIPLIVCGDFNAEP 263
Score = 66 (28.3 bits), Expect = 3.3e-19, Sum P(3) = 3.3e-19
Identities = 23/94 (24%), Positives = 36/94 (38%)
Query: 506 PLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCTR---DFIGTLDYIFYTAXXXXX 562
P Y FA + L ++ D + P T R + TLDYI+Y+
Sbjct: 263 PTEEVYKHFASSSLNLNSAYKLLSADGQSEPPYTTWKIRTSGECRHTLDYIWYSKHALSV 322
Query: 563 XXXXXXXXXXXXRKDTALPSPEWSSDHIALLAEF 596
+ LPS + SDH++L+ +F
Sbjct: 323 KSALDLLTEEQIGPNR-LPSFNYPSDHLSLVCDF 355
>UNIPROTKB|I3LN01 [details] [associations]
symbol:CCRN4L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IEA] Pfam:PF03372
GeneTree:ENSGT00550000074364 InterPro:IPR005135 SUPFAM:SSF56219
CTD:25819 OMA:HPEYLVS EMBL:FP102607 RefSeq:XP_003129235.1
UniGene:Ssc.9136 Ensembl:ENSSSCT00000031350 GeneID:100513746
KEGG:ssc:100513746 Uniprot:I3LN01
Length = 427
Score = 173 (66.0 bits), Expect = 2.0e-18, Sum P(3) = 2.0e-18
Identities = 45/126 (35%), Positives = 66/126 (52%)
Query: 244 SDGRISSTGTFSVLSYNILSDVYATS-ESYSYCPSWALSWAYRRQNLLREIIGYRADIVC 302
+DG SS V+ +NIL+ +++ CP AL W R+ +L EI+ Y+ DI+C
Sbjct: 134 ADGP-SSHPPIRVMQWNILAQALGEGKDNFVQCPLEALKWEERKCLILEEILAYQPDILC 192
Query: 303 LQEVQNDHFEEFFAPELDKHGYQALYKRKT-----NEVYNGNPHTIDGCATFFRRDRFSH 357
LQEV DH+ + F P L + GYQ + K + +N P DGCA FF ++RF
Sbjct: 193 LQEV--DHYFDTFHPLLSRLGYQGTFFPKPWSPCLDVEHNNGP---DGCALFFLQNRFKL 247
Query: 358 VKKYEV 363
V +
Sbjct: 248 VNSANI 253
Score = 98 (39.6 bits), Expect = 2.0e-18, Sum P(3) = 2.0e-18
Identities = 20/61 (32%), Positives = 32/61 (52%)
Query: 407 QGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSV 466
Q + R+ C+A TH+ + + Q LL+ L+ I A IP+++CGDFN+
Sbjct: 269 QTLECRASRRQFCIAVTHLKARTGWERFRSAQGCDLLQNLQNITQGAKIPLIICGDFNAE 328
Query: 467 P 467
P
Sbjct: 329 P 329
Score = 66 (28.3 bits), Expect = 2.0e-18, Sum P(3) = 2.0e-18
Identities = 23/94 (24%), Positives = 36/94 (38%)
Query: 506 PLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCTR---DFIGTLDYIFYTAXXXXX 562
P Y FA + L ++ D + P T R + TLDYI+Y+
Sbjct: 329 PTEEVYKHFASSSLNLSSAYKLLSADGQSEPPYTTWKIRTSGECRHTLDYIWYSRQALSV 388
Query: 563 XXXXXXXXXXXXRKDTALPSPEWSSDHIALLAEF 596
+ LPS + SDH++L+ +F
Sbjct: 389 RSALDLLTEEQIGPNR-LPSFNYPSDHLSLVCDF 421
>MGI|MGI:109382 [details] [associations]
symbol:Ccrn4l "CCR4 carbon catabolite repression 4-like (S.
cerevisiae)" species:10090 "Mus musculus" [GO:0000290
"deadenylation-dependent decapping of nuclear-transcribed mRNA"
evidence=IGI] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IGI] [GO:0048511 "rhythmic process" evidence=IEA]
Pfam:PF03372 MGI:MGI:109382 GO:GO:0048511 GO:GO:0000932
eggNOG:COG5239 GeneTree:ENSGT00550000074364 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0033962 CleanEx:MM_CCR4 GO:GO:0000290
CTD:25819 HOGENOM:HOG000237357 HOVERGEN:HBG006512 OMA:HPEYLVS
OrthoDB:EOG4NZTTH ChiTaRS:CCRN4L EMBL:U70139 EMBL:AF183960
EMBL:AF199491 EMBL:AK087790 IPI:IPI00133829 IPI:IPI00662222
RefSeq:NP_033964.1 UniGene:Mm.86541 ProteinModelPortal:O35710
SMR:O35710 STRING:O35710 PhosphoSite:O35710 PaxDb:O35710
PRIDE:O35710 Ensembl:ENSMUST00000023849 Ensembl:ENSMUST00000167780
GeneID:12457 KEGG:mmu:12457 UCSC:uc008pdn.2 InParanoid:O35710
BRENDA:3.1.13.4 NextBio:281308 Bgee:O35710 Genevestigator:O35710
GermOnline:ENSMUSG00000023087 Uniprot:O35710
Length = 429
Score = 173 (66.0 bits), Expect = 3.3e-18, Sum P(3) = 3.3e-18
Identities = 42/121 (34%), Positives = 63/121 (52%)
Query: 249 SSTGTFSVLSYNILSDVYATS-ESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQ 307
SS V+ +NIL+ +++ CP AL W R+ +L EI+ Y+ DI+CLQEV
Sbjct: 136 SSHSPIRVMQWNILAQALGEGKDNFVQCPVEALKWEERKCLILEEILAYQPDILCLQEV- 194
Query: 308 NDHFEEFFAPELDKHGYQALYKRKT-----NEVYNGNPHTIDGCATFFRRDRFSHVKKYE 362
DH+ + F P L + GYQ + K + +N P DGCA FF ++RF +
Sbjct: 195 -DHYFDTFQPLLSRLGYQGTFFPKPWSPCLDVEHNNGP---DGCALFFLQNRFKLISSTN 250
Query: 363 V 363
+
Sbjct: 251 I 251
Score = 96 (38.9 bits), Expect = 3.3e-18, Sum P(3) = 3.3e-18
Identities = 29/79 (36%), Positives = 40/79 (50%)
Query: 390 VKDN-VALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEK 448
+K N VA+ LE K S RQ C+A TH+ + + Q LL+ L+
Sbjct: 258 LKTNQVAIAQTLECKESG--------RQF-CIAVTHLKARTGWERFRSAQGCDLLQNLQN 308
Query: 449 IAASADIPMLVCGDFNSVP 467
I A IP++VCGDFN+ P
Sbjct: 309 ITQGAKIPLIVCGDFNAEP 327
Score = 66 (28.3 bits), Expect = 3.3e-18, Sum P(3) = 3.3e-18
Identities = 23/94 (24%), Positives = 36/94 (38%)
Query: 506 PLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCTR---DFIGTLDYIFYTAXXXXX 562
P Y FA + L ++ D + P T R + TLDYI+Y+
Sbjct: 327 PTEEVYKHFASSSLNLNSAYKLLSPDGQSEPPYTTWKIRTSGECRHTLDYIWYSRHALSV 386
Query: 563 XXXXXXXXXXXXRKDTALPSPEWSSDHIALLAEF 596
+ LPS + SDH++L+ +F
Sbjct: 387 TSALDLLTEEQIGPNR-LPSFHYPSDHLSLVCDF 419
>UNIPROTKB|Q9UK39 [details] [associations]
symbol:CCRN4L "Nocturnin" species:9606 "Homo sapiens"
[GO:0048511 "rhythmic process" evidence=IEA] [GO:0000290
"deadenylation-dependent decapping of nuclear-transcribed mRNA"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=TAS] [GO:0005634 "nucleus"
evidence=TAS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] Pfam:PF03372 GO:GO:0005654 GO:GO:0003700
GO:GO:0048511 GO:GO:0006366 EMBL:CH471056 eggNOG:COG5239
InterPro:IPR005135 SUPFAM:SSF56219 Reactome:REACT_24941
CleanEx:HS_CCR4 EMBL:AF183961 EMBL:BC113494 EMBL:BC113500
EMBL:AF199492 EMBL:AF199493 EMBL:AF199494 IPI:IPI00015890
RefSeq:NP_036250.2 UniGene:Hs.639842 UniGene:Hs.656047
ProteinModelPortal:Q9UK39 SMR:Q9UK39 IntAct:Q9UK39 STRING:Q9UK39
PhosphoSite:Q9UK39 DMDM:212276446 PaxDb:Q9UK39 PRIDE:Q9UK39
Ensembl:ENST00000280614 GeneID:25819 KEGG:hsa:25819 UCSC:uc003ihl.3
CTD:25819 GeneCards:GC04P139936 H-InvDB:HIX0004503 HGNC:HGNC:14254
MIM:608468 neXtProt:NX_Q9UK39 PharmGKB:PA26176 HOGENOM:HOG000237357
HOVERGEN:HBG006512 InParanoid:Q9UK39 OMA:HPEYLVS OrthoDB:EOG4NZTTH
PhylomeDB:Q9UK39 ChiTaRS:CCRN4L GenomeRNAi:25819 NextBio:47067
Bgee:Q9UK39 CleanEx:HS_CCRN4L Genevestigator:Q9UK39
GermOnline:ENSG00000151014 Uniprot:Q9UK39
Length = 431
Score = 170 (64.9 bits), Expect = 7.5e-18, Sum P(3) = 7.5e-18
Identities = 41/114 (35%), Positives = 61/114 (53%)
Query: 256 VLSYNILSDVYATS-ESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEF 314
V+ +NIL+ +++ CP AL W R+ +L EI+ Y+ DI+CLQEV DH+ +
Sbjct: 145 VMQWNILAQALGEGKDNFVQCPVEALKWEERKCLILEEILAYQPDILCLQEV--DHYFDT 202
Query: 315 FAPELDKHGYQALYKRKT-----NEVYNGNPHTIDGCATFFRRDRFSHVKKYEV 363
F P L + GYQ + K + +N P DGCA FF ++RF V +
Sbjct: 203 FQPLLSRLGYQGTFFPKPWSPCLDVEHNNGP---DGCALFFLQNRFKLVNSANI 253
Score = 97 (39.2 bits), Expect = 7.5e-18, Sum P(3) = 7.5e-18
Identities = 30/92 (32%), Positives = 44/92 (47%)
Query: 376 ILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVK 435
++ SA + L + VA+ LE K S RQ C+A TH+ + +
Sbjct: 247 LVNSANIRLTAMTLKTNQVAIAQTLECKESG--------RQF-CIAVTHLKARTGWERFR 297
Query: 436 LWQVHTLLKGLEKIAASADIPMLVCGDFNSVP 467
Q LL+ L+ I A IP++VCGDFN+ P
Sbjct: 298 SAQGCDLLQNLQNITQGAKIPLIVCGDFNAEP 329
Score = 65 (27.9 bits), Expect = 7.5e-18, Sum P(3) = 7.5e-18
Identities = 23/94 (24%), Positives = 36/94 (38%)
Query: 506 PLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCTR---DFIGTLDYIFYTAXXXXX 562
P Y FA + L ++ D + P T R + TLDYI+Y+
Sbjct: 329 PTEEVYKHFASSSLNLNSAYKLLSADGQSEPPYTTWKIRTSGECRHTLDYIWYSKHALNV 388
Query: 563 XXXXXXXXXXXXRKDTALPSPEWSSDHIALLAEF 596
+ LPS + SDH++L+ +F
Sbjct: 389 RSALDLLTEEQIGPNR-LPSFNYPSDHLSLVCDF 421
>TAIR|locus:2832132 [details] [associations]
symbol:AT5G11350 "AT5G11350" species:3702 "Arabidopsis
thaliana" [GO:0003824 "catalytic activity" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] Pfam:PF03372 GO:GO:0005634
GO:GO:0005737 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 GO:GO:0003723 GO:GO:0090305
eggNOG:COG5239 InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0004535
EMBL:AL360314 EMBL:AY069916 EMBL:AY143977 IPI:IPI00526280
RefSeq:NP_196696.2 UniGene:At.27820 ProteinModelPortal:Q8VYU4
SMR:Q8VYU4 PaxDb:Q8VYU4 PRIDE:Q8VYU4 EnsemblPlants:AT5G11350.1
GeneID:831006 KEGG:ath:AT5G11350 TAIR:At5g11350
HOGENOM:HOG000111455 InParanoid:Q8VYU4 OMA:LYFHIPR PhylomeDB:Q8VYU4
ProtClustDB:CLSN2690149 Genevestigator:Q8VYU4 Uniprot:Q8VYU4
Length = 754
Score = 196 (74.1 bits), Expect = 5.5e-17, Sum P(2) = 5.5e-17
Identities = 52/143 (36%), Positives = 76/143 (53%)
Query: 254 FSVLSYNILSDVYATSE---SYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDH 310
F VLSYNIL+D A Y + P LSW +R+ L+ E+ + ADI+CLQEV D
Sbjct: 183 FVVLSYNILADYLANDHWRSLYFHIPRNMLSWGWRKSKLVFELSLWSADIMCLQEV--DK 240
Query: 311 FEEFFAPELDKHGYQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQ 370
F++ E+ GY A++K +T GN +DGCA F+R +RF V + ++FN+
Sbjct: 241 FQDL-EEEMKHRGYSAIWKMRT-----GN--AVDGCAIFWRSNRFKLVHEESIQFNQLG- 291
Query: 371 SLTDAILPSAQKKNALNRLVKDN 393
L D + + L K+N
Sbjct: 292 -LRDNVAQICVLETLLTSHTKEN 313
Score = 132 (51.5 bits), Expect = 5.4e-10, Sum P(2) = 5.4e-10
Identities = 41/142 (28%), Positives = 68/142 (47%)
Query: 341 HTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVL 400
+ +DGCA F+R +RF V + ++FN+ L D + + L K+N
Sbjct: 263 NAVDGCAIFWRSNRFKLVHEESIQFNQLG--LRDNVAQICVLETLLTSHTKENET----- 315
Query: 401 EAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAAS-ADIPMLV 459
S+ G+ R ++C N HV + + D KL QV TLL ++ D P+++
Sbjct: 316 PPPESSAGSH----RVVIC--NIHVLFNPKRGDFKLGQVRTLLDKAHAVSKLWDDAPIVL 369
Query: 460 CGDFNSVPGSAPHALLAMGKVE 481
CGDFN P S + ++ K++
Sbjct: 370 CGDFNCTPKSPLYNFISDRKLD 391
Score = 95 (38.5 bits), Expect = 5.5e-17, Sum P(2) = 5.5e-17
Identities = 30/97 (30%), Positives = 42/97 (43%)
Query: 499 TKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCTRDFIGTLDYIFYTAX 558
T + H L L S YS +E Q D EP+ T R F+GT+DYI + +
Sbjct: 657 TTVEHALELKSTYSE---------VEGQANTRDEN-GEPVVTSYHRCFMGTVDYI-WRSE 705
Query: 559 XXXXXXXXXXXXXXXXRKDTALPSPEWSSDHIALLAE 595
+ P+P+W SDHIAL++E
Sbjct: 706 GLQTVRVLAPIPKQAMQWTPGFPTPKWGSDHIALVSE 742
Score = 40 (19.1 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 585 WSSDHIALLAEFRCKPRA 602
W I L +F C P++
Sbjct: 362 WDDAPIVLCGDFNCTPKS 379
>ZFIN|ZDB-GENE-050208-306 [details] [associations]
symbol:ccrn4la "CCR4 carbon catabolite repression
4-like a (S. cerevisiae)" species:7955 "Danio rerio" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
Pfam:PF03372 ZFIN:ZDB-GENE-050208-306 GeneTree:ENSGT00550000074364
InterPro:IPR005135 SUPFAM:SSF56219 EMBL:AL929007 IPI:IPI00900988
RefSeq:XP_700794.1 UniGene:Dr.91274 Ensembl:ENSDART00000113469
GeneID:572044 KEGG:dre:572044 CTD:572044 NextBio:20890814
Uniprot:E7F177
Length = 432
Score = 182 (69.1 bits), Expect = 1.4e-16, Sum P(3) = 1.4e-16
Identities = 42/105 (40%), Positives = 60/105 (57%)
Query: 256 VLSYNILSDVYATS-ESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEF 314
++ +NIL+ + + CP AL+W+ R+ +L EI+ YR D+VCLQEV DH+ +
Sbjct: 135 IMQWNILAQALGEGKDGFVRCPMEALNWSERKYLILEEILTYRPDVVCLQEV--DHYFDT 192
Query: 315 FAPELDKHGYQALYKRKTN----EVYNGNPHTIDGCATFFRRDRF 355
F P L GYQ+ + K +V+N N DGCA FF R RF
Sbjct: 193 FQPVLSSLGYQSSFCPKPCSPCLDVHNNNGP--DGCALFFNRRRF 235
Score = 70 (29.7 bits), Expect = 1.4e-16, Sum P(3) = 1.4e-16
Identities = 25/91 (27%), Positives = 43/91 (47%)
Query: 389 LVKDN-VALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLE 447
++K N VA++ L K + + + CVA TH+ + + Q LL+ L
Sbjct: 249 MLKTNQVAVVATLRCKLTGR---------VFCVAVTHLKARSGWEAFRSAQGANLLQQLH 299
Query: 448 KIAASAD-----------IPMLVCGDFNSVP 467
+I + ++ IP++VCGDFN+ P
Sbjct: 300 EITSQSNPEMHQDDQTEGIPLIVCGDFNAEP 330
Score = 66 (28.3 bits), Expect = 1.4e-16, Sum P(3) = 1.4e-16
Identities = 25/102 (24%), Positives = 38/102 (37%)
Query: 506 PLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCTR---DFIGTLDYIFYTAXXXXX 562
P Y F +GL ++ D TT P + R + TLDYI+Y+
Sbjct: 330 PNEEVYRHFRSSSLGLDSVYKCLSDDRTTEPPYTSWKIRPSGECCSTLDYIWYSEKAFEV 389
Query: 563 XXXXXXXXXXXXRKDTALPSPEWSSDHIALLAEFRCKPRARR 604
D LPS + SDH++L+ + + R
Sbjct: 390 DAVLRIPSEEQIGPDR-LPSFHYPSDHLSLVCDLSFSQQPHR 430
>UNIPROTKB|F1NVT2 [details] [associations]
symbol:CCRN4L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IEA] [GO:0000932 "cytoplasmic
mRNA processing body" evidence=IEA] [GO:0033962 "cytoplasmic mRNA
processing body assembly" evidence=IEA] Pfam:PF03372
GeneTree:ENSGT00550000074364 InterPro:IPR005135 SUPFAM:SSF56219
OMA:HPEYLVS EMBL:AADN02016273 IPI:IPI00577593
Ensembl:ENSGALT00000015887 ArrayExpress:F1NVT2 Uniprot:F1NVT2
Length = 371
Score = 170 (64.9 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 40/114 (35%), Positives = 60/114 (52%)
Query: 256 VLSYNILSDVYATS-ESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEF 314
V+ +NIL+ +++ CP AL W R+ +L EI+ Y+ DI+CLQEV DH+ +
Sbjct: 85 VMQWNILAQALGEGKDNFVQCPMEALKWEERKCLILEEILAYKPDILCLQEV--DHYFDT 142
Query: 315 FAPELDKHGYQALYKRKT-----NEVYNGNPHTIDGCATFFRRDRFSHVKKYEV 363
F P L + GYQ + K + N P DGCA FF ++RF + +
Sbjct: 143 FEPLLSRLGYQCTFFPKPWSPCLDVEQNNGP---DGCALFFLKERFELINSANI 193
Score = 98 (39.6 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 39/136 (28%), Positives = 62/136 (45%)
Query: 416 QLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPH--- 472
+L C+A TH+ + + Q LL+ L+ I A IP+++CGDFN+ P +
Sbjct: 218 KLFCIAVTHLKARTGWERFRSAQGCDLLQNLKSITQGAKIPLIICGDFNAEPTEEVYREF 277
Query: 473 ---ALLAMGKVEPVHPD-LAVDPLTI--LRPHTKLTHQLPLVSAYSSFA-RIGVGLGM-- 523
+L + + PD + P T +RP + H L + YS A + LG+
Sbjct: 278 SNSSLNLNSAYKLLSPDGQSEPPYTTWKIRPSGECRHTLDYIW-YSQHALNVNSALGLLT 336
Query: 524 EHQ--RRRMDPTTNEP 537
E Q R+ P+ N P
Sbjct: 337 EEQIGPNRL-PSFNYP 351
Score = 62 (26.9 bits), Expect = 7.9e-12, Sum P(2) = 7.9e-12
Identities = 22/94 (23%), Positives = 36/94 (38%)
Query: 506 PLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCTR---DFIGTLDYIFYTAXXXXX 562
P Y F+ + L ++ D + P T R + TLDYI+Y+
Sbjct: 269 PTEEVYREFSNSSLNLNSAYKLLSPDGQSEPPYTTWKIRPSGECRHTLDYIWYSQHALNV 328
Query: 563 XXXXXXXXXXXXRKDTALPSPEWSSDHIALLAEF 596
+ LPS + SDH++L+ +F
Sbjct: 329 NSALGLLTEEQIGPNR-LPSFNYPSDHLSLVCDF 361
>FB|FBgn0261808 [details] [associations]
symbol:cu "curled" species:7227 "Drosophila melanogaster"
[GO:0005811 "lipid particle" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0009416 "response to light stimulus"
evidence=IMP] [GO:0045475 "locomotor rhythm" evidence=IMP]
[GO:0030014 "CCR4-NOT complex" evidence=IDA] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=IMP]
Pfam:PF03372 EMBL:AE014297 GO:GO:0005811 GO:GO:0009416
GO:GO:0045475 eggNOG:COG5239 GeneTree:ENSGT00550000074364
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0030014 GO:GO:0000289
RefSeq:NP_001097746.1 UniGene:Dm.11906 ProteinModelPortal:A8JQX3
SMR:A8JQX3 STRING:A8JQX3 EnsemblMetazoa:FBtr0113219 GeneID:41339
KEGG:dme:Dmel_CG31299 UCSC:CG31299-RD CTD:41339 FlyBase:FBgn0261808
OrthoDB:EOG4CC2GK PhylomeDB:A8JQX3 GenomeRNAi:41339 NextBio:823348
Bgee:A8JQX3 Uniprot:A8JQX3
Length = 642
Score = 154 (59.3 bits), Expect = 1.2e-13, Sum P(3) = 1.2e-13
Identities = 34/102 (33%), Positives = 58/102 (56%)
Query: 256 VLSYNILSDVYAT-SESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEF 314
+L +NILS ++ + CP AL+W +R+ +++EI+ + D++CLQEV DHF+ F
Sbjct: 313 LLQWNILSQTLGQHNDGFVRCPEEALTWEHRKYLIVQEILQNQPDVICLQEV--DHFK-F 369
Query: 315 FAPELDKHGYQALYKRKTNE--VYNGNPHTIDGCATFFRRDR 354
L Y ++ K + +Y + DGCA F++RD+
Sbjct: 370 LQTVLGSQNYAGIFFPKPDSPCLYIEQNNGPDGCAIFYKRDK 411
Score = 85 (35.0 bits), Expect = 1.2e-13, Sum P(3) = 1.2e-13
Identities = 25/85 (29%), Positives = 43/85 (50%)
Query: 419 CVANTHVNVHQELKDVKLW--QVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLA 476
CVA TH+ KL Q L++ +++ A D P+L+CGDFN+ P +A +
Sbjct: 448 CVATTHLKARHGALLAKLRNEQGRDLIRFVKQFAG--DTPLLLCGDFNAEPVEPIYATIL 505
Query: 477 ---MGKVEPVHPDLAVDPLTILRPH 498
+ ++ + D+ +D IL P+
Sbjct: 506 GCDLLRLGSAYADVKLDREEILHPN 530
Score = 62 (26.9 bits), Expect = 1.2e-13, Sum P(3) = 1.2e-13
Identities = 15/52 (28%), Positives = 23/52 (44%)
Query: 549 TLDYIFYTAXXXXXXXXXXXXXXXXXRKDTALPSPEWSSDHIALLAEFRCKP 600
T+DY+FYT K+ PS ++ SDH +L+ +F P
Sbjct: 561 TIDYVFYTPDRLKIKNCLDFPAGEQIGKNRT-PSFQYPSDHFSLVCDFELLP 611
>DICTYBASE|DDB_G0289461 [details] [associations]
symbol:DDB_G0289461 "putative CCR4-NOT complex
subunit 6" species:44689 "Dictyostelium discoideum" [GO:0003674
"molecular_function" evidence=ND] [GO:0030015 "CCR4-NOT core
complex" evidence=ISS] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
dictyBase:DDB_G0289461 Pfam:PF03372 EMBL:AAFI02000141 GO:GO:0004527
GO:GO:0004519 eggNOG:COG5239 InterPro:IPR005135 SUPFAM:SSF56219
GO:GO:0030015 RefSeq:XP_636212.1 ProteinModelPortal:Q54HH3
EnsemblProtists:DDB0237634 GeneID:8627150 KEGG:ddi:DDB_G0289461
OMA:REGCFIF Uniprot:Q54HH3
Length = 573
Score = 206 (77.6 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 90/374 (24%), Positives = 160/374 (42%)
Query: 254 FSVLSYNILSDVYATSESYSYCPSWALSW-AYRRQNLLREIIGYRADIVCLQEVQNDHFE 312
+ ++ YNIL+D Y + Y++ S++L W +YR L+ +I+ Y+ADIV QEV +++
Sbjct: 220 YRIIQYNILADCYVSDSWYTHSASYSLRWNSYRSYLLIEQILQYKADIVGTQEVDRLYWQ 279
Query: 313 EFFAPELDKHG---YQALYKRKTNE----VYNG-NPHTIDGCATFFRRDRFSHVKKYEVE 364
F E++ G Y Y +NE G N +GC FF++DRF+ ++ E++
Sbjct: 280 LF--KEMNVRGGYDYYPSYANDSNESPQTTMGGFNNSYREGCFIFFKKDRFNLLQGLEID 337
Query: 365 FNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLE-AKFSNQGA--------DTPGKR 415
+ K + +L KK + L++D + + + S+ D K+
Sbjct: 338 YTKLNRP-DQKLL----KKELVEILIQDPIYKSCITHFLEHSSHHVHHALVLLQDKQTKQ 392
Query: 416 QLLCVANTHVNVHQELK-DVKLWQVHT---LLKGLEKI-AASADIPMLVCGDFNSVPGSA 470
+++ V+ Q ++ Q+H +L ++ +IP++VCGDFNS P +
Sbjct: 393 KMIVVSKHMYWGSQGYNYHIQCVQIHLFTMILSNFIQVNKLENNIPIVVCGDFNSSPDDS 452
Query: 471 PHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRM 530
+ + G + ++ D H L + P S F ++H +
Sbjct: 453 CYNFMTKGLM--MNDD----------HHLTLAGKYPPAFNSSQFDNHPEIKSIKHDFNFL 500
Query: 531 DPTT----NEPLFTHCTRDFIGTLDYIFYTAXXXXXXXXXXXXXXXXXRKDTALPSPEWS 586
+ EP FT +R F G +D IF + + LPS +
Sbjct: 501 SSYSLRPDGEPKFTIVSRAFTGNIDQIFVSKDRFKVNNVLEIGEKQDYKM---LPSLTLA 557
Query: 587 SDHIALLAEFRCKP 600
SDHI L+ + P
Sbjct: 558 SDHILLMTDLELLP 571
>TAIR|locus:504956231 [details] [associations]
symbol:AT1G73875 "AT1G73875" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] Pfam:PF03372 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0046872
GO:GO:0006351 GO:GO:0003723 GO:GO:0090305 eggNOG:COG5239
InterPro:IPR005135 SUPFAM:SSF56219 EMBL:AC016662 GO:GO:0004535
EMBL:BT010832 EMBL:BT011303 EMBL:AK230427 IPI:IPI00529493
IPI:IPI00915125 IPI:IPI00915130 RefSeq:NP_683491.2 UniGene:At.45165
ProteinModelPortal:Q0WKY2 SMR:Q0WKY2 EnsemblPlants:AT1G73875.1
GeneID:843724 KEGG:ath:AT1G73875 TAIR:At1g73875
HOGENOM:HOG000241777 OMA:ICKEISR PhylomeDB:Q0WKY2
ProtClustDB:CLSN2915147 Genevestigator:Q0WKY2 Uniprot:Q0WKY2
Length = 454
Score = 136 (52.9 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
Identities = 36/114 (31%), Positives = 60/114 (52%)
Query: 256 VLSYNILSDVYATS--ESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEE 313
++SYN+L A++ + Y P L W+ R+ + +EI Y A I+CLQEV D F++
Sbjct: 102 LVSYNLLGVDNASNHMDLYYNVPRKHLEWSRRKHLICKEISRYNASILCLQEV--DRFDD 159
Query: 314 FFAPELDKHGYQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNK 367
L G++ ++K +T E DGCA F++ + F + +EF+K
Sbjct: 160 LDVL-LKNRGFRGVHKSRTGEAS-------DGCAIFWKENLFELLDHQHIEFDK 205
Score = 107 (42.7 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
Identities = 50/204 (24%), Positives = 82/204 (40%)
Query: 344 DGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAK 403
DGCA F++ + F + +EF+K +++NVA + VLE
Sbjct: 182 DGCAIFWKENLFELLDHQHIEFDKFG--------------------MRNNVAQLCVLEMN 221
Query: 404 FSNQGADTPGKR----QLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAAS-ADIPML 458
R + L V N HV + + D+KL QV L+ K++ +IP+
Sbjct: 222 CEEDPKSKLRVRSSDPRRLVVGNIHVLFNPKRGDIKLGQVRLFLEKAYKLSQEWGNIPVA 281
Query: 459 VCGDFNSVPGSAPHALLAMGKVEP-VHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARI 517
+ GD NS P SA + +A ++ +H + T + P + A+S+ A I
Sbjct: 282 IAGDLNSTPQSAIYDFIASADLDTQLHDRRQISGQTEVEPKERSFRNH---YAFSASASI 338
Query: 518 GVGLGMEHQRRRMDPTTNEPLFTH 541
L E + + T TH
Sbjct: 339 SGSLLNEWSQEELQLATGGQETTH 362
Score = 102 (41.0 bits), Expect = 8.7e-12, Sum P(2) = 8.7e-12
Identities = 33/97 (34%), Positives = 42/97 (43%)
Query: 499 TKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCTRDFIGTLDYIFYTAX 558
T + HQL L SAYS G+ R D EPL T F+GT+DYI++T
Sbjct: 361 THVQHQLKLNSAYS---------GVPGTYRTRDQR-GEPLATTYHSRFLGTVDYIWHTKE 410
Query: 559 XXXXXXXXXXXXXXXXRKDTALPSPEWSSDHIALLAE 595
R+ LPS W SDH+A+ E
Sbjct: 411 LVPVRVLETLPADVL-RRTGGLPSENWGSDHLAIACE 446
>SGD|S000005402 [details] [associations]
symbol:NGL1 "Putative endonuclease" species:4932
"Saccharomyces cerevisiae" [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=ISS]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0090305 "nucleic acid phosphodiester bond hydrolysis"
evidence=IEA] SGD:S000005402 Pfam:PF03372 GO:GO:0005739
EMBL:BK006948 GO:GO:0004527 GO:GO:0004519 eggNOG:COG5239
InterPro:IPR005135 SUPFAM:SSF56219 EMBL:Z74784 EMBL:AY693067
PIR:S66727 RefSeq:NP_014600.1 ProteinModelPortal:Q08213 SMR:Q08213
DIP:DIP-4236N IntAct:Q08213 MINT:MINT-522599 STRING:Q08213
PaxDb:Q08213 EnsemblFungi:YOL042W GeneID:854115 KEGG:sce:YOL042W
CYGD:YOL042w HOGENOM:HOG000000773 OMA:CAIFFRS OrthoDB:EOG42C1JF
NextBio:975810 Genevestigator:Q08213 GermOnline:YOL042W
Uniprot:Q08213
Length = 363
Score = 168 (64.2 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 72/278 (25%), Positives = 120/278 (43%)
Query: 226 RRLFPVNGSDMNMMG-HIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAY 284
RR PV S +G ++ D R F++L+YN+LS Y + Y+Y +W+Y
Sbjct: 4 RRFIPVVQSTKQNIGKYVRKDAR------FTLLTYNMLSPSYMWPQVYTYVAEPYKNWSY 57
Query: 285 RRQNLLREIIG-YRADIVCLQEVQNDHFEEFFAPELDKH-GYQALYKRKTNEVYNGNP-H 341
R + L +E++ ++ADI+CLQE+ +E+++ + Y + + KT Y P
Sbjct: 58 RHRLLEKELLNTFKADIMCLQEMTARDYEDYWHDSIGVDVNYGSKFISKTPPKYWKKPVK 117
Query: 342 TIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNV----ALI 397
+DG + F+ +F + + N+ L K NV +L+
Sbjct: 118 DMDGVSIFYNLAKFDFISSSGIYLNQLLNVFNQRELKYLYNKKVTLTDGASNVIGEDSLL 177
Query: 398 VVLEAKFSNQGADTPGKRQ-----LLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAAS 452
VL+ K NQ R + V NTH+ + + +VKL Q +++ L KI
Sbjct: 178 DVLKGK--NQVCLFVSLRHKETGTIFVVLNTHL--YWKYDEVKLTQCMIIMRELSKI--- 230
Query: 453 ADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAVD 490
I L+ GD V G +L G + L V+
Sbjct: 231 --IKQLLPGD---VKGQERVKILFTGDLNSTRDSLVVN 263
Score = 50 (22.7 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 580 LPSPEWSSDHIALLAEFR 597
LP+ SDHI LL EF+
Sbjct: 344 LPNENHPSDHIPLLTEFK 361
>RGD|1587344 [details] [associations]
symbol:Ccrn4l "CCR4 carbon catabolite repression 4-like (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0000290
"deadenylation-dependent decapping of nuclear-transcribed mRNA"
evidence=IEA;ISO] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA;ISO] [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA;ISO] [GO:0048511 "rhythmic process"
evidence=IEA] Pfam:PF03372 RGD:1587344 GO:GO:0048511 eggNOG:COG5239
InterPro:IPR005135 SUPFAM:SSF56219 HOGENOM:HOG000237357
HOVERGEN:HBG006512 OrthoDB:EOG4NZTTH EMBL:AF199495 IPI:IPI00890357
UniGene:Rn.15040 ProteinModelPortal:Q9ET55 STRING:Q9ET55
PRIDE:Q9ET55 UCSC:RGD:1587344 InParanoid:Q9ET55
Genevestigator:Q9ET55 GermOnline:ENSRNOG00000010799 Uniprot:Q9ET55
Length = 253
Score = 164 (62.8 bits), Expect = 9.4e-10, P = 9.4e-10
Identities = 41/121 (33%), Positives = 61/121 (50%)
Query: 249 SSTGTFSVLSYNILSDVYATS-ESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQ 307
SS V+ +NIL+ +++ CP AL W R+ +L EI+ Y+ DI+CLQEV
Sbjct: 62 SSHPPIRVMQWNILAQALGEGKDNFVQCPVEALKWEERKCLILEEILAYQPDILCLQEV- 120
Query: 308 NDHFEEFFAPELDKHGYQALYKRKT-----NEVYNGNPHTIDGCATFFRRDRFSHVKKYE 362
DH+ + P L + GYQ + K + +N P DGCA FF + RF +
Sbjct: 121 -DHYFDTLQPLLSRLGYQGTFFPKPWSPCLDVEHNNGP---DGCALFFLQSRFKLINSTN 176
Query: 363 V 363
+
Sbjct: 177 I 177
>SGD|S000004898 [details] [associations]
symbol:NGL2 "Protein involved in 5.8S rRNA processing"
species:4932 "Saccharomyces cerevisiae" [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0090305 "nucleic
acid phosphodiester bond hydrolysis" evidence=IEA] [GO:0004521
"endoribonuclease activity" evidence=ISS;IMP] [GO:0005622
"intracellular" evidence=IDA] [GO:0006364 "rRNA processing"
evidence=IMP] SGD:S000004898 Pfam:PF03372 GO:GO:0005634
GO:GO:0005737 GO:GO:0003723 GO:GO:0005622 EMBL:BK006946
GO:GO:0004527 EMBL:Z49704 GO:GO:0004521 eggNOG:COG5239
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0006364 PIR:S54592
RefSeq:NP_014012.1 ProteinModelPortal:Q03264 DIP:DIP-894N
IntAct:Q03264 STRING:Q03264 PaxDb:Q03264 PeptideAtlas:Q03264
EnsemblFungi:YMR285C GeneID:855329 KEGG:sce:YMR285C CYGD:YMR285c
GeneTree:ENSGT00550000076051 HOGENOM:HOG000248147 KO:K14812
OMA:MRAISLY OrthoDB:EOG4K3Q4X NextBio:979049 Genevestigator:Q03264
GermOnline:YMR285C Uniprot:Q03264
Length = 515
Score = 160 (61.4 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 71/243 (29%), Positives = 108/243 (44%)
Query: 251 TG-TFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQN-LLREIIGYRADIVCLQEVQN 308
TG F +++YN L+ + + AL W YRR LL E Y +D++CLQE+ +
Sbjct: 108 TGFRFKLMTYNCLAQALIRRKLFPDSGD-ALKW-YRRSKVLLNEFKYYNSDVICLQEIDH 165
Query: 309 DHFEEFFAPELDKHGYQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKA 368
F+ F+ E K GY Y R N N H G A +RR+ F V K ++++K
Sbjct: 166 IQFQSFWKDEFSKLGYDGQYYR--NATKN---H---GVAIMWRRELFHQVDKMLIDYDKE 217
Query: 369 AQSLTDAILPSAQKKNA-LNRLVKDNVALIVVLEAKFSNQGADTPGKRQLLCVA-NTHVN 426
+ +++I N L +K + ++ L K S + G L T+
Sbjct: 218 S---SESISTRTTTNNVGLVLALKFSEKVLSNLGKKSSKKCGILIGTTHLFWHPFGTYER 274
Query: 427 VHQ---ELKDVKLWQVH--TLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVE 481
Q LK +K + +H +L+ S P CGDFNS P P+ L+M +
Sbjct: 275 TRQCYIVLKKMKEF-MHRVNVLQNENDGDLSHWFPFF-CGDFNSQPFDTPY--LSMTS-K 329
Query: 482 PVH 484
PVH
Sbjct: 330 PVH 332
Score = 48 (22.0 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 519 VGLGMEH-QRRRMDPTTNEPLFTHCTRDFIGTLDYIFY 555
VG H + +D EP ++ + G LDY+FY
Sbjct: 413 VGYKNVHPENAGLDNDRGEPEISNWANTWRGLLDYLFY 450
>CGD|CAL0006120 [details] [associations]
symbol:orf19.5527 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0004521
"endoribonuclease activity" evidence=IEA] CGD:CAL0006120
Pfam:PF03372 eggNOG:COG5239 InterPro:IPR005135 SUPFAM:SSF56219
EMBL:AACQ01000034 KO:K14812 RefSeq:XP_719092.1 GeneID:3639207
KEGG:cal:CaO19.5527 Uniprot:Q5AC23
Length = 519
Score = 154 (59.3 bits), Expect = 5.5e-08, Sum P(3) = 5.5e-08
Identities = 64/230 (27%), Positives = 95/230 (41%)
Query: 253 TFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFE 312
+ ++SYNIL+ E Y L W+ R Q LL E+ Y ADI+CLQEV +E
Sbjct: 114 SIKIMSYNILAQTLIRREIYP-TNGKILKWSVRSQILLDELKHYNADIMCLQEVDKVQYE 172
Query: 313 EFFAPELDKHGYQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSL 372
F+ +L+K GY + R N N H GC FR F+ K++ F + Q L
Sbjct: 173 GFWVSQLEKLGYSTRFYR--NNTKN---H---GCVIVFRDKLFTC--KHQ-SFIRLDQDL 221
Query: 373 TDAILPSAQKKNALNRLVKDNVALIVVLE--AKFSNQGADTPGKRQLLCVANTHVNVHQE 430
+++K R+ N+A + LE F + + + TH+ H
Sbjct: 222 NQE---ASEKSLPPARIATTNIAFMAYLEFTPTFIKEYPCLEETNGFI-IGTTHLFWHPF 277
Query: 431 LKDVKLWQVHTLLKGLEK--------IAASADIPMLVCGDFNSVPGSAPH 472
+ Q + LL + + S GDFNS P AP+
Sbjct: 278 GTYERARQTYMLLYKFREFQRVLRIIVGNSKRFYSFFTGDFNSEPFDAPY 327
Score = 50 (22.7 bits), Expect = 5.5e-08, Sum P(3) = 5.5e-08
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 535 NEPLFTHCTRDFIGTLDYIF 554
NEP F++ + G LDYIF
Sbjct: 432 NEPAFSNWVDKWNGMLDYIF 451
Score = 37 (18.1 bits), Expect = 5.5e-08, Sum P(3) = 5.5e-08
Identities = 5/12 (41%), Positives = 11/12 (91%)
Query: 584 EWSSDHIALLAE 595
++ SDH++++AE
Sbjct: 504 QYPSDHLSIMAE 515
>GENEDB_PFALCIPARUM|PFC0850c [details] [associations]
symbol:PFC0850c "hypothetical protein,
conserved" species:5833 "Plasmodium falciparum" [GO:0020011
"apicoplast" evidence=RCA] Pfam:PF03372 GO:GO:0004527 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 EMBL:AL844502 PIR:T18484
RefSeq:XP_001351262.1 ProteinModelPortal:O77366
EnsemblProtists:PFC0850c:mRNA GeneID:814506 KEGG:pfa:PFC0850c
EuPathDB:PlasmoDB:PF3D7_0319200 HOGENOM:HOG000283196
ProtClustDB:CLSZ2433494 Uniprot:O77366
Length = 906
Score = 150 (57.9 bits), Expect = 7.1e-07, P = 7.1e-07
Identities = 98/436 (22%), Positives = 165/436 (37%)
Query: 180 YTPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRVIPAPSPSPRRLFPVNG--SDMN 237
Y P+ +D+ K + V+ D E H +T + + + N SD N
Sbjct: 494 YVPNKEDVNK--KLQLVIYDKENPF---H--FYVTDDLYVNENKFNNEMMIKNNRYSDFN 546
Query: 238 MMGHIDSDGRISSTGTFSVLSYNILSDVY-----ATSESYSYCPSWALSWAYRRQNLLRE 292
+ D +LSYNIL+ +Y A + L YR L+ +
Sbjct: 547 ---NDDRKNNSCEKNVIRILSYNILAPIYTNTKYALEHMFKNIDPCYLKTNYRSHLLIHD 603
Query: 293 IIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEVYNGNPHTIDGCATFFRR 352
I DI+ LQEV F L+++ Y + YK K N GN DGC+ F +
Sbjct: 604 I-NNNYDIISLQEVSEYLHSHLFCTFLNEN-YFSNYKPKNNF---GN----DGCSLFVNK 654
Query: 353 DRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTP 412
+F+ ++ EFN+ + TD + + LN L K+ +I ++ F
Sbjct: 655 KKFTLIEYKNYEFNQVIK--TDEF--KSIYETFLN-LSKELDDIIKEIKTVFQIGIYMHK 709
Query: 413 GKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAAS-------ADIPMLVCGDFNS 465
+ ++NTH H + ++ Q +T+L L+ + ++ +++ GDFN+
Sbjct: 710 NTNSIFLISNTHFYFHSLAQHIRALQSYTILHILQTLKKKYQLTYPEKEVYIILNGDFNT 769
Query: 466 VPGSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGL-GME 524
S + + P D+ + + L L + + G
Sbjct: 770 NFDSEVFHFIQGKDISPTS-DIWFNAQLFKKEFDDLDKYPNLFELEKNKNNNEQSIIGPH 828
Query: 525 HQRRRMDP-----TTNEPLFTHCTRDFIGTLDYIFYTAXXXXXXXXXXXXXXXXXRKDTA 579
R++ P T + FT+ +FI LDYIF + + A
Sbjct: 829 LDRKKFMPLYSAYTKQDIQFTNWNNNFIDVLDYIFLSTNIKVRKVLKGIDKECFQKYKGA 888
Query: 580 LPSPEWSSDHIALLAE 595
L SP SDHI++ AE
Sbjct: 889 L-SPINPSDHISIAAE 903
>UNIPROTKB|O77366 [details] [associations]
symbol:PFC0850c "Endonuclease/exonuclease/phosphatase
family protein, putative" species:36329 "Plasmodium falciparum 3D7"
[GO:0020011 "apicoplast" evidence=RCA] Pfam:PF03372 GO:GO:0004527
GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219 EMBL:AL844502
PIR:T18484 RefSeq:XP_001351262.1 ProteinModelPortal:O77366
EnsemblProtists:PFC0850c:mRNA GeneID:814506 KEGG:pfa:PFC0850c
EuPathDB:PlasmoDB:PF3D7_0319200 HOGENOM:HOG000283196
ProtClustDB:CLSZ2433494 Uniprot:O77366
Length = 906
Score = 150 (57.9 bits), Expect = 7.1e-07, P = 7.1e-07
Identities = 98/436 (22%), Positives = 165/436 (37%)
Query: 180 YTPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRVIPAPSPSPRRLFPVNG--SDMN 237
Y P+ +D+ K + V+ D E H +T + + + N SD N
Sbjct: 494 YVPNKEDVNK--KLQLVIYDKENPF---H--FYVTDDLYVNENKFNNEMMIKNNRYSDFN 546
Query: 238 MMGHIDSDGRISSTGTFSVLSYNILSDVY-----ATSESYSYCPSWALSWAYRRQNLLRE 292
+ D +LSYNIL+ +Y A + L YR L+ +
Sbjct: 547 ---NDDRKNNSCEKNVIRILSYNILAPIYTNTKYALEHMFKNIDPCYLKTNYRSHLLIHD 603
Query: 293 IIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEVYNGNPHTIDGCATFFRR 352
I DI+ LQEV F L+++ Y + YK K N GN DGC+ F +
Sbjct: 604 I-NNNYDIISLQEVSEYLHSHLFCTFLNEN-YFSNYKPKNNF---GN----DGCSLFVNK 654
Query: 353 DRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTP 412
+F+ ++ EFN+ + TD + + LN L K+ +I ++ F
Sbjct: 655 KKFTLIEYKNYEFNQVIK--TDEF--KSIYETFLN-LSKELDDIIKEIKTVFQIGIYMHK 709
Query: 413 GKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAAS-------ADIPMLVCGDFNS 465
+ ++NTH H + ++ Q +T+L L+ + ++ +++ GDFN+
Sbjct: 710 NTNSIFLISNTHFYFHSLAQHIRALQSYTILHILQTLKKKYQLTYPEKEVYIILNGDFNT 769
Query: 466 VPGSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGL-GME 524
S + + P D+ + + L L + + G
Sbjct: 770 NFDSEVFHFIQGKDISPTS-DIWFNAQLFKKEFDDLDKYPNLFELEKNKNNNEQSIIGPH 828
Query: 525 HQRRRMDP-----TTNEPLFTHCTRDFIGTLDYIFYTAXXXXXXXXXXXXXXXXXRKDTA 579
R++ P T + FT+ +FI LDYIF + + A
Sbjct: 829 LDRKKFMPLYSAYTKQDIQFTNWNNNFIDVLDYIFLSTNIKVRKVLKGIDKECFQKYKGA 888
Query: 580 LPSPEWSSDHIALLAE 595
L SP SDHI++ AE
Sbjct: 889 L-SPINPSDHISIAAE 903
>SGD|S000004587 [details] [associations]
symbol:NGL3 "3'-5' exonuclease specific for poly-A RNAs"
species:4932 "Saccharomyces cerevisiae" [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0004535 "poly(A)-specific ribonuclease
activity" evidence=IDA] [GO:0090305 "nucleic acid phosphodiester
bond hydrolysis" evidence=IEA] [GO:0043633
"polyadenylation-dependent RNA catabolic process" evidence=IDA]
[GO:0004519 "endonuclease activity" evidence=ISS] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0004518 "nuclease activity" evidence=IEA]
SGD:S000004587 Pfam:PF03372 EMBL:BK006946 GO:GO:0004519
eggNOG:COG5239 InterPro:IPR005135 SUPFAM:SSF56219 EMBL:Z49210
GO:GO:0004535 EMBL:Z49218 GeneTree:ENSGT00550000076051
HOGENOM:HOG000248147 OrthoDB:EOG4K3Q4X PIR:S54066
RefSeq:NP_013588.1 ProteinModelPortal:Q03210 IntAct:Q03210
MINT:MINT-4084056 STRING:Q03210 PRIDE:Q03210 EnsemblFungi:YML118W
GeneID:854921 KEGG:sce:YML118W CYGD:YML118w OMA:FETANNI
NextBio:977935 Genevestigator:Q03210 GermOnline:YML118W
GO:GO:0043633 Uniprot:Q03210
Length = 505
Score = 94 (38.1 bits), Expect = 1.3e-06, Sum P(4) = 1.3e-06
Identities = 32/133 (24%), Positives = 58/133 (43%)
Query: 210 NTLLTSRVIPA-PSPS----PRRLFPVNGSDMNMMGHIDSDGRISSTGT-FSVLSYNILS 263
N+L++ P P+P R P+N N G + +++ +++YN L+
Sbjct: 61 NSLISQGKDPDFPTPDLQFIERPFLPINHD--NSKGLTPATIQVTQDSLDVKIMTYNTLA 118
Query: 264 DVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHG 323
+ + AL W R + L+ E+ YR D+V LQEV + F+ K G
Sbjct: 119 QTLIRRDFFPESGP-ALKWHKRSKVLVHELKKYRPDVVSLQEVDYNELN-FWQENFHKLG 176
Query: 324 YQALYKRKTNEVY 336
+ ++KR + +
Sbjct: 177 FDVIFKRHEGKTH 189
Score = 73 (30.8 bits), Expect = 1.3e-06, Sum P(4) = 1.3e-06
Identities = 29/90 (32%), Positives = 46/90 (51%)
Query: 393 NVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAAS 452
N+ALI+ L K G R ++ VANTH+ H +L Q + +L+ +++I A
Sbjct: 227 NIALIISLYFK----GITDSSSRGII-VANTHLFWHPFGVFERLRQSYLVLQKIQEIKAC 281
Query: 453 ADIP---MLVCGDFNSVPGSAPHALLAMGK 479
+ L+ GDFN+ P P+ LA+ K
Sbjct: 282 SKYNGWHSLLMGDFNTEPEEPPY--LAITK 309
Score = 58 (25.5 bits), Expect = 1.3e-06, Sum P(4) = 1.3e-06
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 518 GVGLGMEHQRRRMDPTTNEPLFTHCTRDFIGTLDYIFY 555
G+G G H + + EP ++ + G LDYIFY
Sbjct: 396 GIGYGKVHPENA-NGSHGEPGLSNWANTWCGLLDYIFY 432
Score = 44 (20.5 bits), Expect = 1.3e-06, Sum P(4) = 1.3e-06
Identities = 7/14 (50%), Positives = 12/14 (85%)
Query: 584 EWSSDHIALLAEFR 597
E++SDHI+L+ + R
Sbjct: 480 EYASDHISLMCQIR 493
>FB|FBgn0016762 [details] [associations]
symbol:angel "angel" species:7227 "Drosophila melanogaster"
[GO:0005575 "cellular_component" evidence=ND] [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] Pfam:PF03372 EMBL:AE013599 GO:GO:0007275
eggNOG:COG5239 GeneTree:ENSGT00550000074364 InterPro:IPR005135
SUPFAM:SSF56219 EMBL:X85743 EMBL:AY058301 PIR:S71925
RefSeq:NP_477204.1 UniGene:Dm.4319 ProteinModelPortal:Q24239
DIP:DIP-17505N IntAct:Q24239 MINT:MINT-777493 STRING:Q24239
EnsemblMetazoa:FBtr0072083 GeneID:37748 KEGG:dme:Dmel_CG12273
UCSC:CG12273-RA CTD:37748 FlyBase:FBgn0016762 InParanoid:Q24239
OMA:DVRCAQV OrthoDB:EOG4FQZ73 PhylomeDB:Q24239 GenomeRNAi:37748
NextBio:805224 Bgee:Q24239 GermOnline:CG12273 Uniprot:Q24239
Length = 354
Score = 140 (54.3 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 42/124 (33%), Positives = 59/124 (47%)
Query: 253 TFSVLSYNILSDVYATSESYSYC--PSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDH 310
+F V+SYNIL+ + Y P LSW R+QNLLRE++ DI+CLQE+Q DH
Sbjct: 67 SFKVVSYNILAQDLLLEHLFLYVGIPHEFLSWQRRQQNLLRELLKLDPDILCLQEMQFDH 126
Query: 311 FEEFFAPELDKHGYQA--LYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKA 368
+G + +YK+KT DGCA + +F + VE
Sbjct: 127 LPVLVQRLRMGNGKKLAYVYKKKTG-------CRTDGCAIVYDSSKFELLDHQAVELYDQ 179
Query: 369 AQSL 372
A +L
Sbjct: 180 AVAL 183
Score = 116 (45.9 bits), Expect = 0.00089, P = 0.00089
Identities = 48/159 (30%), Positives = 71/159 (44%)
Query: 344 DGCATFFRRDRFSHVKKYEVEFNKAAQSLTD--AILPSAQKKNALNR----LVKDNVALI 397
D +R R + KK + K TD AI+ + K L+ L VAL+
Sbjct: 125 DHLPVLVQRLRMGNGKKLAYVYKKKTGCRTDGCAIVYDSSKFELLDHQAVELYDQAVALL 184
Query: 398 ----VVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASA 453
V L A+F + K VA TH+ + + DV+ QV +L+ L+ S
Sbjct: 185 NRDNVALFARFRFKKQQEQQKE--FVVATTHLLFNTKRSDVRCAQVERILEELQSF--ST 240
Query: 454 DIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAVDPL 492
D P+++ GDFNS+P S+P L +GK V +PL
Sbjct: 241 DTPIVLTGDFNSLPDSSPIEFL-VGKNGDVDSTACPEPL 278
>TAIR|locus:2204863 [details] [associations]
symbol:AT1G02270 "AT1G02270" species:3702 "Arabidopsis
thaliana" [GO:0003824 "catalytic activity" evidence=ISS]
[GO:0005509 "calcium ion binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=IDA] [GO:0009409 "response to cold"
evidence=IEP] InterPro:IPR002048 InterPro:IPR011992 PROSITE:PS50222
Pfam:PF03372 Prosite:PS00018 GO:GO:0016021 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009409 GO:GO:0005509
Gene3D:1.10.238.10 InterPro:IPR005135 SUPFAM:SSF56219 EMBL:U89959
EMBL:AY052704 EMBL:AY063716 IPI:IPI00522847 RefSeq:NP_563646.1
UniGene:At.10716 ProteinModelPortal:O81916 SMR:O81916
EnsemblPlants:AT1G02270.1 GeneID:839381 KEGG:ath:AT1G02270
TAIR:At1g02270 eggNOG:NOG134127 HOGENOM:HOG000006305
InParanoid:O81916 OMA:VESNISC PhylomeDB:O81916
ProtClustDB:CLSN2916945 Genevestigator:O81916 Uniprot:O81916
Length = 484
Score = 105 (42.0 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 40/155 (25%), Positives = 67/155 (43%)
Query: 218 IPAPSPSPRRLFPVNGSDMNMMGHIDSDGRISST-GTFSVLSYNILSDVY--ATSESYSY 274
+P P L N +++M ++S+ S S ++NIL+ +Y +++S
Sbjct: 35 VPLPIYFSGLLSGRNNKPLSVM-RLNSNLASSMVESNISCTTFNILAPIYKRVDQKNHST 93
Query: 275 CPS-WALSWAYRRQNLLREIIGYRADIVCLQEVQ--NDHFEEFFAPELDKHGYQALYKRK 331
S + W R Q +L ++ R+ ++CLQEV N+ + +L GY +
Sbjct: 94 RESDFRTLWLARNQRILDLLLHQRSSVICLQEVWVGNEELVNMYHHQLSSSGYTIYQLAR 153
Query: 332 TNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFN 366
TN G DG T +D F V E+ FN
Sbjct: 154 TNS--RG-----DGLLTAIHKDHFKVVNYRELLFN 181
Score = 65 (27.9 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 18/55 (32%), Positives = 31/55 (56%)
Query: 415 RQLLCVANTHVNV-HQE-LKDVKLWQVHTLLKGLEKIAASADI---PMLVCGDFN 464
+Q + + NTH+ H L V+L QV+ +L+ LE + P+++CGD+N
Sbjct: 208 QQEVIIVNTHLLFPHDSSLSIVRLHQVYKILEYLEAYQKENKLNHMPIILCGDWN 262
>TAIR|locus:2028696 [details] [associations]
symbol:AT1G31530 "AT1G31530" species:3702 "Arabidopsis
thaliana" [GO:0005575 "cellular_component" evidence=ND] [GO:0016787
"hydrolase activity" evidence=ISS] Pfam:PF03372 EMBL:CP002684
EMBL:AC074360 InterPro:IPR005135 SUPFAM:SSF56219 KO:K12603
HOGENOM:HOG000265770 IPI:IPI00519106 RefSeq:NP_174438.1
UniGene:At.51858 ProteinModelPortal:Q9C6U7 PRIDE:Q9C6U7
EnsemblPlants:AT1G31530.1 GeneID:840043 KEGG:ath:AT1G31530
TAIR:At1g31530 InParanoid:Q9C6U7 OMA:FEADFIC PhylomeDB:Q9C6U7
ProtClustDB:CLSN2913551 ArrayExpress:Q9C6U7 Genevestigator:Q9C6U7
Uniprot:Q9C6U7
Length = 283
Score = 120 (47.3 bits), Expect = 0.00020, P = 0.00020
Identities = 57/209 (27%), Positives = 96/209 (45%)
Query: 269 SESYSYC-PSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQAL 327
S S Y P ++ W R + +L I + AD +CLQEV D + FF ++ GY +
Sbjct: 3 SSSLMYVSPPESILWEKRSKAILDNIKNFEADFICLQEV--DEYHSFFDRNMEAQGYSGI 60
Query: 328 YKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTD-AILPSAQKKNAL 386
+ E Y CA FF+ +F+ Y+ + + + PS+ ++
Sbjct: 61 -PIENKEGYE--------CAIFFK-PKFAEFITYQTTRIQGYTKYENLCVAPSSSTVSSE 110
Query: 387 NRLVKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELK--DVKLWQVHTLLK 444
+ V + L VV+ A F P ++ +A++H+ + + D+KL QV TL+
Sbjct: 111 SSDVVNAEELSVVMVA-FKIL---KPFNHVVI-IASSHLKSGKPDRWDDLKLAQVKTLMT 165
Query: 445 GL----EKIAASADI-P-MLVCGDFNSVP 467
L E I+A + P +++ GDFNS P
Sbjct: 166 ELASFKEIISALTNCSPSVILAGDFNSKP 194
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.135 0.419 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 604 561 0.00099 119 3 11 22 0.37 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 58
No. of states in DFA: 624 (66 KB)
Total size of DFA: 349 KB (2175 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 44.26u 0.10s 44.36t Elapsed: 00:00:03
Total cpu time: 44.27u 0.10s 44.37t Elapsed: 00:00:03
Start: Tue May 21 03:53:07 2013 End: Tue May 21 03:53:10 2013